Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.9.4 dated 2022-12-01 and 0.9.5 dated 2023-01-07
DESCRIPTION | 10 +- MD5 | 26 ++--- R/Boost.R | 6 - R/Multivariate_Regression.R | 2 R/NNS_VAR.R | 10 +- R/Normalization.R | 145 +++++++++++++++++------------- R/Nowcast.R | 52 ++++++++-- README.md | 4 inst/doc/NNSvignette_Partial_Moments.R | 7 + inst/doc/NNSvignette_Partial_Moments.Rmd | 13 ++ inst/doc/NNSvignette_Partial_Moments.html | 83 +++++++++-------- man/NNS.norm.Rd | 5 - man/NNS.nowcast.Rd | 17 ++- vignettes/NNSvignette_Partial_Moments.Rmd | 13 ++ 14 files changed, 252 insertions(+), 141 deletions(-)
Title: Multivariate Generalized Linear Mixed Models for Ranking Sports
Teams
Description: Maximum likelihood estimates are obtained via an EM algorithm with either a first-order or a fully exponential Laplace approximation as documented by Broatch and Karl (2018) <doi:10.48550/arXiv.1710.05284>,
Karl, Yang, and Lohr (2014) <doi:10.1016/j.csda.2013.11.019>, and by
Karl (2012) <doi:10.1515/1559-0410.1471>. Karl and Zimmerman <doi:10.1016/j.jspi.2020.06.004> use this package to illustrate how the home field effect estimator from a mixed model can be biased under nonrandom scheduling.
Author: Andrew T. Karl [cre, aut] ,
Jennifer Broatch [aut]
Maintainer: Andrew T. Karl <akarl@asu.edu>
Diff between mvglmmRank versions 1.2-3 dated 2023-01-06 and 1.2-4 dated 2023-01-07
DESCRIPTION | 27 ++++++++++++++++++++------- MD5 | 6 +++--- NEWS | 4 ++++ man/mvglmmRank-package.Rd | 6 +++--- 4 files changed, 30 insertions(+), 13 deletions(-)
Title: Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools
Description: Using tidy data principles can make many text mining tasks
easier, more effective, and consistent with tools already in wide use.
Much of the infrastructure needed for text mining with tidy data
frames already exists in packages like 'dplyr', 'broom', 'tidyr', and
'ggplot2'. In this package, we provide functions and supporting data
sets to allow conversion of text to and from tidy formats, and to
switch seamlessly between tidy tools and existing text mining
packages.
Author: Gabriela De Queiroz [ctb],
Colin Fay [ctb] ,
Emil Hvitfeldt [ctb],
Os Keyes [ctb] ,
Kanishka Misra [ctb],
Tim Mastny [ctb],
Jeff Erickson [ctb],
David Robinson [aut],
Julia Silge [aut, cre]
Maintainer: Julia Silge <julia.silge@gmail.com>
Diff between tidytext versions 0.4.0 dated 2022-12-20 and 0.4.1 dated 2023-01-07
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/stm_tidiers.R | 2 +- inst/doc/tf_idf.html | 4 ++-- inst/doc/tidying_casting.html | 4 ++-- inst/doc/tidytext.html | 8 ++++---- 7 files changed, 22 insertions(+), 18 deletions(-)
Title: Maximum Likelihood Estimation of Multiple Membership Mixed
Models Used in Value-Added Modeling
Description: An EM algorithm, Karl et al. (2013) <doi:10.1016/j.csda.2012.10.004>, is used to estimate the generalized, variable, and complete persistence models, Mariano et al. (2010) <doi:10.3102/1076998609346967>. These are multiple-membership linear mixed models with teachers modeled as "G-side" effects and students modeled with either "G-side" or "R-side" effects.
Author: Andrew Karl [cre, aut] ,
Yan Yang [aut],
Sharon Lohr [aut]
Maintainer: Andrew Karl <akarl@asu.edu>
Diff between GPvam versions 3.0-8 dated 2022-09-03 and 3.0-9 dated 2023-01-07
DESCRIPTION | 28 ++++++++++++++++++++++------ MD5 | 8 ++++---- NEWS | 3 +++ R/GPvam.R | 3 +-- man/GPvam-package.Rd | 4 ++-- 5 files changed, 32 insertions(+), 14 deletions(-)
Title: Waveband Definitions for UV, VIS, and IR Radiation
Description: Constructors of waveband objects for commonly used biological
spectral weighting functions (BSWFs) and for different wavebands describing
named ranges of wavelengths in the ultraviolet (UV), visible (VIS)
and infrared (IR) regions of the electromagnetic spectrum. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyWavebands versions 0.5.0 dated 2022-08-15 and 0.5.1 dated 2023-01-07
photobiologyWavebands-0.5.0/photobiologyWavebands/man/CIE.Rd |only photobiologyWavebands-0.5.0/photobiologyWavebands/man/ICNIRP.Rd |only photobiologyWavebands-0.5.1/photobiologyWavebands/DESCRIPTION | 14 photobiologyWavebands-0.5.1/photobiologyWavebands/MD5 | 140 +++---- photobiologyWavebands-0.5.1/photobiologyWavebands/NAMESPACE | 3 photobiologyWavebands-0.5.1/photobiologyWavebands/NEWS.md | 12 photobiologyWavebands-0.5.1/photobiologyWavebands/R/blue.r | 57 ++- photobiologyWavebands-0.5.1/photobiologyWavebands/R/cie.r | 71 +++ photobiologyWavebands-0.5.1/photobiologyWavebands/R/far.red.r | 72 +++ photobiologyWavebands-0.5.1/photobiologyWavebands/R/flav.r | 10 photobiologyWavebands-0.5.1/photobiologyWavebands/R/gen.g.r | 2 photobiologyWavebands-0.5.1/photobiologyWavebands/R/gen.m.r | 2 photobiologyWavebands-0.5.1/photobiologyWavebands/R/gen.t.r | 2 photobiologyWavebands-0.5.1/photobiologyWavebands/R/green.r | 51 ++ photobiologyWavebands-0.5.1/photobiologyWavebands/R/icnirp.e.fun.r | 4 photobiologyWavebands-0.5.1/photobiologyWavebands/R/icnirp.r | 67 +++ photobiologyWavebands-0.5.1/photobiologyWavebands/R/ir.r | 40 +- photobiologyWavebands-0.5.1/photobiologyWavebands/R/meth.r | 10 photobiologyWavebands-0.5.1/photobiologyWavebands/R/orange.r | 17 photobiologyWavebands-0.5.1/photobiologyWavebands/R/par.r | 181 +++++++++- photobiologyWavebands-0.5.1/photobiologyWavebands/R/pg.r | 30 + photobiologyWavebands-0.5.1/photobiologyWavebands/R/photobiologyWavebands.R | 28 - photobiologyWavebands-0.5.1/photobiologyWavebands/R/plant.bands.r | 21 - photobiologyWavebands-0.5.1/photobiologyWavebands/R/purple.r | 17 photobiologyWavebands-0.5.1/photobiologyWavebands/R/red.r | 55 ++- photobiologyWavebands-0.5.1/photobiologyWavebands/R/spectral.data.r | 6 photobiologyWavebands-0.5.1/photobiologyWavebands/R/uv.r | 18 photobiologyWavebands-0.5.1/photobiologyWavebands/R/uva.r | 40 +- photobiologyWavebands-0.5.1/photobiologyWavebands/R/uvb.r | 27 + photobiologyWavebands-0.5.1/photobiologyWavebands/R/uvc.r | 20 - photobiologyWavebands-0.5.1/photobiologyWavebands/R/uvi.r | 52 ++ photobiologyWavebands-0.5.1/photobiologyWavebands/R/uvi.wb.r | 7 photobiologyWavebands-0.5.1/photobiologyWavebands/R/yellow.r | 9 photobiologyWavebands-0.5.1/photobiologyWavebands/README.md | 117 ++++-- photobiologyWavebands-0.5.1/photobiologyWavebands/build/partial.rdb |binary photobiologyWavebands-0.5.1/photobiologyWavebands/build/vignette.rds |binary photobiologyWavebands-0.5.1/photobiologyWavebands/inst/doc/r4p-introduction.html | 18 photobiologyWavebands-0.5.1/photobiologyWavebands/inst/doc/user-guide.R | 6 photobiologyWavebands-0.5.1/photobiologyWavebands/inst/doc/user-guide.Rmd | 13 photobiologyWavebands-0.5.1/photobiologyWavebands/inst/doc/user-guide.html | 167 ++++----- photobiologyWavebands-0.5.1/photobiologyWavebands/man/Blue.Rd | 127 ++++--- photobiologyWavebands-0.5.1/photobiologyWavebands/man/CH4.Rd | 17 photobiologyWavebands-0.5.1/photobiologyWavebands/man/DNA_GM.Rd | 7 photobiologyWavebands-0.5.1/photobiologyWavebands/man/DNA_N.Rd | 7 photobiologyWavebands-0.5.1/photobiologyWavebands/man/DNA_P.Rd | 7 photobiologyWavebands-0.5.1/photobiologyWavebands/man/FLAV.Rd | 17 photobiologyWavebands-0.5.1/photobiologyWavebands/man/Far_red.Rd | 72 +++ photobiologyWavebands-0.5.1/photobiologyWavebands/man/GEN_G.Rd | 9 photobiologyWavebands-0.5.1/photobiologyWavebands/man/GEN_M.Rd | 9 photobiologyWavebands-0.5.1/photobiologyWavebands/man/GEN_T.Rd | 9 photobiologyWavebands-0.5.1/photobiologyWavebands/man/Green.Rd | 49 ++ photobiologyWavebands-0.5.1/photobiologyWavebands/man/ICNIRP_e_fun.Rd | 4 photobiologyWavebands-0.5.1/photobiologyWavebands/man/IR.Rd | 36 + photobiologyWavebands-0.5.1/photobiologyWavebands/man/Orange.Rd | 17 photobiologyWavebands-0.5.1/photobiologyWavebands/man/PAR.Rd | 176 ++++++++- photobiologyWavebands-0.5.1/photobiologyWavebands/man/PG.Rd | 34 + photobiologyWavebands-0.5.1/photobiologyWavebands/man/Plant_bands.Rd | 2 photobiologyWavebands-0.5.1/photobiologyWavebands/man/Purple.Rd | 18 photobiologyWavebands-0.5.1/photobiologyWavebands/man/Red.Rd | 50 ++ photobiologyWavebands-0.5.1/photobiologyWavebands/man/SetlowTUV.spct.Rd | 2 photobiologyWavebands-0.5.1/photobiologyWavebands/man/UV.Rd | 19 - photobiologyWavebands-0.5.1/photobiologyWavebands/man/UVA.Rd | 38 +- photobiologyWavebands-0.5.1/photobiologyWavebands/man/UVB.Rd | 27 + photobiologyWavebands-0.5.1/photobiologyWavebands/man/UVC.Rd | 21 - photobiologyWavebands-0.5.1/photobiologyWavebands/man/UVI.Rd | 36 + photobiologyWavebands-0.5.1/photobiologyWavebands/man/UVI_wb.Rd | 7 photobiologyWavebands-0.5.1/photobiologyWavebands/man/UV_health_hazard.Rd |only photobiologyWavebands-0.5.1/photobiologyWavebands/man/Yellow.Rd | 10 photobiologyWavebands-0.5.1/photobiologyWavebands/man/erythema.Rd |only photobiologyWavebands-0.5.1/photobiologyWavebands/man/photobiologyWavebands-package.Rd | 28 - photobiologyWavebands-0.5.1/photobiologyWavebands/man/photopic_sensitivity.Rd | 2 photobiologyWavebands-0.5.1/photobiologyWavebands/man/scotopic_sensitivity.Rd | 2 photobiologyWavebands-0.5.1/photobiologyWavebands/vignettes/user-guide.Rmd | 13 73 files changed, 1647 insertions(+), 631 deletions(-)
More information about photobiologyWavebands at CRAN
Permanent link
Title: Rmetrics - Bivariate Dependence Structures with Copulae
Description: Provides a collection of functions to
manage, to investigate and to analyze bivariate financial returns by
Copulae. Included are the families of Archemedean, Elliptical,
Extreme Value, and Empirical Copulae.
Author: Diethelm Wuertz [aut],
Tobias Setz [aut],
Yohan Chalabi [ctb],
Paul Smith [cre]
Maintainer: Paul Smith <paul@waternumbers.co.uk>
Diff between fCopulae versions 4021.84 dated 2022-07-20 and 4022.85 dated 2023-01-07
ChangeLog | 15 +++++++++++++++ DESCRIPTION | 13 +++++-------- MD5 | 14 +++++++------- R/ArchimedeanCopulae.R | 3 ++- R/ArchimedeanGenerator.R | 27 +++++++++++++++++++++++---- R/ArchimedeanModelling.R | 2 +- inst/unitTests/runTests.R | 7 ++++++- inst/unitTests/runit.ArchimedeanCopulae.R | 1 - 8 files changed, 59 insertions(+), 23 deletions(-)
Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling
into 'Python', R data types are automatically converted to their equivalent 'Python'
types. When values are returned from 'Python' to R they are converted back to R
types. Compatible with all versions of 'Python' >= 2.7.
Author: Tomasz Kalinowski [ctb, cre],
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph, fnd],
Yuan Tang [aut, cph] ,
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Sigrid Keydana [ctb],
Ryan Hafen [ctb, cph],
Marcus Geelnard [ctb, cph]
Maintainer: Tomasz Kalinowski <tomasz@rstudio.com>
Diff between reticulate versions 1.26 dated 2022-08-31 and 1.27 dated 2023-01-07
DESCRIPTION | 8 MD5 | 70 - NEWS.md | 15 R/conda.R | 53 + R/config.R | 2 R/install-python.R | 3 R/miniconda.R | 19 R/python.R | 3 R/testthat-helpers.R | 10 R/use_python.R | 8 inst/config/config.py | 2 inst/doc/arrays.Rmd | 2 inst/doc/arrays.html | 975 +++++++++------------- inst/doc/calling_python.html | 559 ++++-------- inst/doc/package.html | 370 +++----- inst/doc/python_dependencies.html | 188 +--- inst/doc/python_packages.html | 203 +--- inst/doc/python_primer.html | 1365 +++++++++++-------------------- inst/doc/r_markdown.Rmd | 2 inst/doc/r_markdown.html | 68 - inst/doc/versions.html | 155 --- inst/python/rpytools/loader.py | 209 +++- man/conda-tools.Rd | 3 man/install_python.Rd | 3 man/use_python.Rd | 8 src/libpython.cpp | 2 src/libpython.h | 2 src/python.cpp | 57 - tests/testthat/resources/import-test.R |only tests/testthat/test-py_func.R | 6 tests/testthat/test-python-formals.R | 6 tests/testthat/test-python-function.R | 2 tests/testthat/test-python-import-hook.R |only tests/testthat/test-python-numpy.R | 7 tests/testthat/test-python-run.R | 31 vignettes/arrays.Rmd | 2 vignettes/r_markdown.Rmd | 2 37 files changed, 1815 insertions(+), 2605 deletions(-)
Title: Computing Envelope Estimators
Description: Provides a general routine, envMU, which allows estimation of the M envelope of span(U) given root n consistent estimators of M and U. The routine envMU does not presume a model. This package implements response envelopes, partial response envelopes, envelopes in the predictor space, heteroscedastic envelopes, simultaneous envelopes, scaled response envelopes, scaled envelopes in the predictor space, groupwise envelopes, weighted envelopes, envelopes in logistic regression, envelopes in Poisson regression envelopes in function-on-function linear regression, envelope-based Partial Partial Least Squares, envelopes with non-constant error covariance, envelopes with t-distributed errors, reduced rank envelopes and reduced rank envelopes with non-constant error covariance. For each of these model-based routines the package provides inference tools including bootstrap, cross validation, estimation and prediction, hypothesis testing on coefficients are included except for weighted [...truncated...]
Author: Minji Lee, Zhihua Su
Maintainer: Minji Lee <minjilee101@gmail.com>
Diff between Renvlp versions 3.2 dated 2022-08-07 and 3.3 dated 2023-01-07
Renvlp-3.2/Renvlp/R/d.stenv.R |only Renvlp-3.2/Renvlp/man/d.stenv.Rd |only Renvlp-3.3/Renvlp/DESCRIPTION | 12 +- Renvlp-3.3/Renvlp/MD5 | 95 ++++++++++++++++++---- Renvlp-3.3/Renvlp/NAMESPACE | 31 ++++++- Renvlp-3.3/Renvlp/R/boot.env.apweights.R |only Renvlp-3.3/Renvlp/R/boot.env.tcond.R |only Renvlp-3.3/Renvlp/R/boot.eppls.R |only Renvlp-3.3/Renvlp/R/boot.rrenv.R |only Renvlp-3.3/Renvlp/R/boot.rrenv.apweights.R |only Renvlp-3.3/Renvlp/R/cv.env.apweights.R |only Renvlp-3.3/Renvlp/R/cv.env.tcond.R |only Renvlp-3.3/Renvlp/R/cv.eppls.R |only Renvlp-3.3/Renvlp/R/cv.rrenv.R |only Renvlp-3.3/Renvlp/R/cv.rrenv.apweights.R |only Renvlp-3.3/Renvlp/R/d.select.R |only Renvlp-3.3/Renvlp/R/env.apweights.R |only Renvlp-3.3/Renvlp/R/env.tcond.R |only Renvlp-3.3/Renvlp/R/eppls.R |only Renvlp-3.3/Renvlp/R/pred.env.apweights.R |only Renvlp-3.3/Renvlp/R/pred.env.tcond.R |only Renvlp-3.3/Renvlp/R/pred.eppls.R |only Renvlp-3.3/Renvlp/R/pred.genv.R | 4 Renvlp-3.3/Renvlp/R/pred.henv.R | 4 Renvlp-3.3/Renvlp/R/pred.logit.env.R | 4 Renvlp-3.3/Renvlp/R/pred.penv.R | 2 Renvlp-3.3/Renvlp/R/pred.pois.env.R | 4 Renvlp-3.3/Renvlp/R/pred.rrenv.R |only Renvlp-3.3/Renvlp/R/pred.rrenv.apweights.R |only Renvlp-3.3/Renvlp/R/pred.senv.R | 4 Renvlp-3.3/Renvlp/R/pred.stenv.R | 4 Renvlp-3.3/Renvlp/R/pred.sxenv.R | 4 Renvlp-3.3/Renvlp/R/pred.xenv.R | 2 Renvlp-3.3/Renvlp/R/rrenv.R |only Renvlp-3.3/Renvlp/R/rrenv.apweights.R |only Renvlp-3.3/Renvlp/R/rrenvMU.R |only Renvlp-3.3/Renvlp/R/testcoef.env.apweights.R |only Renvlp-3.3/Renvlp/R/testcoef.env.tcond.R |only Renvlp-3.3/Renvlp/R/testcoef.rrenv.R |only Renvlp-3.3/Renvlp/R/testcoef.rrenv.apweights.R |only Renvlp-3.3/Renvlp/R/u.env.apweights.R |only Renvlp-3.3/Renvlp/R/u.env.tcond.R |only Renvlp-3.3/Renvlp/R/u.eppls.R |only Renvlp-3.3/Renvlp/R/u.rrenv.R |only Renvlp-3.3/Renvlp/R/u.rrenv.apweights.R |only Renvlp-3.3/Renvlp/R/u.stenv.R | 2 Renvlp-3.3/Renvlp/data/amitriptyline.rda |only Renvlp-3.3/Renvlp/data/concrete.rda |only Renvlp-3.3/Renvlp/data/vehicles.rda |only Renvlp-3.3/Renvlp/man/Renvlp.Rd | 16 ++- Renvlp-3.3/Renvlp/man/amitriptyline.Rd |only Renvlp-3.3/Renvlp/man/boot.env.apweights.Rd |only Renvlp-3.3/Renvlp/man/boot.env.tcond.Rd |only Renvlp-3.3/Renvlp/man/boot.eppls.Rd |only Renvlp-3.3/Renvlp/man/boot.rrenv.Rd |only Renvlp-3.3/Renvlp/man/boot.rrenv.apweights.Rd |only Renvlp-3.3/Renvlp/man/concrete.Rd |only Renvlp-3.3/Renvlp/man/cv.env.apweights.Rd |only Renvlp-3.3/Renvlp/man/cv.env.tcond.Rd |only Renvlp-3.3/Renvlp/man/cv.eppls.Rd |only Renvlp-3.3/Renvlp/man/cv.rrenv.Rd |only Renvlp-3.3/Renvlp/man/cv.rrenv.apweights.Rd |only Renvlp-3.3/Renvlp/man/d.select.Rd |only Renvlp-3.3/Renvlp/man/env.apweights.Rd |only Renvlp-3.3/Renvlp/man/env.tcond.Rd |only Renvlp-3.3/Renvlp/man/eppls.Rd |only Renvlp-3.3/Renvlp/man/pred.env.apweights.Rd |only Renvlp-3.3/Renvlp/man/pred.env.tcond.Rd |only Renvlp-3.3/Renvlp/man/pred.eppls.Rd |only Renvlp-3.3/Renvlp/man/pred.rrenv.Rd |only Renvlp-3.3/Renvlp/man/pred.rrenv.apweights.Rd |only Renvlp-3.3/Renvlp/man/rrenv.Rd |only Renvlp-3.3/Renvlp/man/rrenv.apweights.Rd |only Renvlp-3.3/Renvlp/man/testcoef.env.apweights.Rd |only Renvlp-3.3/Renvlp/man/testcoef.env.tcond.Rd |only Renvlp-3.3/Renvlp/man/testcoef.rrenv.Rd |only Renvlp-3.3/Renvlp/man/testcoef.rrenv.apweights.Rd |only Renvlp-3.3/Renvlp/man/u.env.apweights.Rd |only Renvlp-3.3/Renvlp/man/u.env.tcond.Rd |only Renvlp-3.3/Renvlp/man/u.eppls.Rd |only Renvlp-3.3/Renvlp/man/u.rrenv.Rd |only Renvlp-3.3/Renvlp/man/u.rrenv.apweights.Rd |only Renvlp-3.3/Renvlp/man/vehicles.Rd |only 83 files changed, 144 insertions(+), 44 deletions(-)
Title: Fertility Models
Description: Four fertility models are fitted using non-linear least squares. These are the Hadwiger, the Gamma, the Model1 and Model2, following the terminology of the following paper: Peristera P. and Kostaki A. (2007). "Modeling fertility in modern populations". Demographic Research, 16(6): 141--194. <doi:10.4054/DemRes.2007.16.6>. Model based averaging is also supported.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between fertilmodel versions 1.0 dated 2022-12-06 and 1.1 dated 2023-01-07
DESCRIPTION | 12 ++++++------ MD5 | 12 +++++++----- NAMESPACE | 1 + R/comb.R |only man/Hadwiger.Rd | 4 ++-- man/comb.Rd |only man/fertil.plot.Rd | 4 ++-- man/fertilmodel-package.Rd | 4 ++-- 8 files changed, 20 insertions(+), 17 deletions(-)
Title: R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also
see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.11 dated 2022-12-13 and 0.0.12 dated 2023-01-07
ChangeLog | 38 ++++ DESCRIPTION | 11 - MD5 | 35 ++-- NAMESPACE | 2 R/RcppExports.R | 45 +++++ R/stopwatch.R |only build/partial.rdb |binary inst/NEWS.Rd | 8 + inst/doc/introduction.html | 267 ++++++++++++++++++++++++++++------ inst/doc/introduction.md | 49 ++++++ inst/include/RcppSpdlog | 3 inst/include/RcppSpdlog_RcppExports.h | 64 ++++++++ inst/include/RcppSpdlog_types.h |only inst/include/rcpp_sink.h | 2 inst/include/spdl.h | 4 man/get_stopwatch.Rd |only man/log_setup.Rd | 4 src/RcppExports.cpp | 111 ++++++++++++++ src/interface.cpp | 59 +++++++ vignettes/introduction.md | 49 ++++++ 20 files changed, 680 insertions(+), 71 deletions(-)
Title: Tools for Analyzing QTL Experiments
Description: Analysis of experimental crosses to identify genes
(called quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Broman et al. (2003) <doi:10.1093/bioinformatics/btg112>.
Author: Karl W Broman <broman@wisc.edu> and Hao Wu, with
ideas from Gary Churchill and Saunak Sen and contributions from
Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr
Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron
Wol [...truncated...]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtl versions 1.54 dated 2022-12-01 and 1.58 dated 2023-01-07
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 8 ++++++++ inst/INSTALL_ME.txt | 12 ++++++------ inst/doc/bcsft.pdf |binary inst/doc/rqtltour.pdf |binary inst/doc/rqtltour2.pdf |binary src/hmm_bci.c | 10 +++++----- src/hmm_bcsft.c | 11 +++++------ src/hmm_f2i.c | 10 +++++----- src/hmm_main.c | 10 +++++----- 11 files changed, 48 insertions(+), 41 deletions(-)
Title: Symbols for 'Markdown' and 'Shiny' Application
Description: Direct insertion of over 1000 symbols (e.g. currencies, letters, arrows, mathematical symbols and so on) into 'Rmarkdown' documents and 'Shiny' applications by incorporating 'HTML' hex codes.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between r2symbols versions 1.2 dated 2022-10-23 and 1.3 dated 2023-01-07
DESCRIPTION | 12 +++++++----- MD5 | 25 +++++++++++++------------ NEWS.md | 20 +++++++++++++++----- R/symbol.R | 6 +++--- README.md | 11 +++++------ build/vignette.rds |binary inst/data_pack.ob |binary inst/doc/introduction_r_symbols.Rmd | 2 +- inst/doc/introduction_r_symbols.html | 8 ++++---- inst/doc/newversion_r_symbols.Rmd | 6 +++--- inst/doc/newversion_r_symbols.html | 19 +++++++++---------- inst/text.txt |only vignettes/introduction_r_symbols.Rmd | 2 +- vignettes/newversion_r_symbols.Rmd | 6 +++--- 14 files changed, 64 insertions(+), 53 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use
in photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse ratios and
other derived quantities from spectral data. Local maxima and minima: peaks,
valleys and spikes. Conversion between energy-and photon-based units.
Wavelength interpolation. Astronomical calculations related solar angles and
day length. Colours and vision. This package is part of the 'r4photobiology'
suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb],
Agnese Fazio [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.10.14 dated 2022-10-15 and 0.10.15 dated 2023-01-07
DESCRIPTION | 22 MD5 | 79 +- NAMESPACE | 8 NEWS.md | 22 R/e2quantum.multipliers.r | 6 R/mspct.row.funs.r | 160 ++-- R/rbindspct.r | 8 R/spct-wide2long.r |only R/spct.classes.r | 6 R/spct.normalize.r | 41 - R/spct.operators.r | 166 +++- R/spct.utils.r | 33 R/sun.calc.r | 138 +++- R/waveband.new.r | 99 ++ R/wl-conversions.R |only R/zmspct.classes.R | 299 +++++--- README.md | 15 build/partial.rdb |binary build/vignette.rds |binary data/beesxyz.spct.rda |binary data/ciev10.spct.rda |binary data/ciev2.spct.rda |binary data/ciexyzCC10.spct.rda |binary data/ciexyzCC2.spct.rda |binary data/ciexyzCMF10.spct.rda |binary data/ciexyzCMF2.spct.rda |binary data/cone_fundamentals10.spct.rda |binary inst/doc/userguide-0-r4p-introduction.html | 2 inst/doc/userguide-1-radiation.Rmd | 964 ++++++++++++++++------------- inst/doc/userguide-1-radiation.html | 597 +++++++++-------- inst/doc/userguide-2-astronomy.html | 46 - man/day_night.Rd | 425 +++++++----- man/e2q.Rd | 24 man/is.waveband.Rd | 3 man/make_wl_consistent.Rd |only man/q2e.Rd | 24 man/rowwise.Rd | 96 ++ man/spct_wide2long.Rd |only man/subset2mspct.Rd | 17 man/sun_angles.Rd | 2 man/waveband.Rd | 14 man/wl2wavenumber.Rd |only vignettes/userguide-1-radiation.Rmd | 964 ++++++++++++++++------------- 43 files changed, 2539 insertions(+), 1741 deletions(-)
Title: Infrastructure for Ordering Objects Using Seriation
Description: Infrastructure for ordering objects with an implementation of several
seriation/sequencing/ordination techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also provides (optimally) reordered heatmaps,
color images and clustering visualizations like dissimilarity plots, and
visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.
Author: Michael Hahsler [aut, cre, cph]
,
Christian Buchta [aut, cph],
Kurt Hornik [aut, cph],
David Barnett [ctb],
Michael Brusco [ctb, cph],
Michael Friendly [ctb],
Hans-Friedrich Koehn [ctb, cph],
Fionn Murtagh [ctb, cph],
Stephanie Stahl [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between seriation versions 1.4.0 dated 2022-10-21 and 1.4.1 dated 2023-01-07
DESCRIPTION | 28 +- MD5 | 62 +++--- NEWS.md | 14 + R/get_order.R | 9 R/permute.R | 2 R/ser_permutation_vector.R | 31 ++- R/seriate.dist.R | 3 R/seriate_ARSA_Branch-Bound.R | 3 R/seriate_R2E.R | 1 R/seriate_SPIN.R | 2 R/seriate_TSP.R | 1 R/seriate_VAT.R | 1 R/seriate_spectral.R | 2 README.md | 18 + build/partial.rdb |binary build/vignette.rds |binary data/Chameleon.rda |binary data/Irish.rda |binary data/Munsingen.rda |binary data/Psych24.rda |binary data/SupremeCourt.rda |binary data/Townships.rda |binary data/Wood.rda |binary data/Zoo.rda |binary inst/doc/seriation.pdf |binary man/get_order.Rd | 6 man/ser_permutation_vector.Rd | 29 ++ src/bea.f | 37 ++- src/criterion.c | 4 src/optimal.c | 2 tests/testthat/test-permuation_vector.R | 8 tests/testthat/test-seriate.R | 314 +++++++++++++++++++++++++------- 32 files changed, 399 insertions(+), 178 deletions(-)
Title: R Graphics Devices for 'Office' Vector Graphics Output
Description: Vector Graphics devices for 'Microsoft PowerPoint' and
'Microsoft Excel'. Functions extending package 'officer' are provided to
embed 'DrawingML' graphics into 'Microsoft PowerPoint' presentations and
'Microsoft Excel' workbooks.
Author: David Gohel [aut, cre],
Bob Rudis [ctb] ,
Francois Brunetti [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.3.1 dated 2022-12-21 and 0.3.2 dated 2023-01-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 12 ++++++++++++ src/raster.cpp | 1 + 4 files changed, 20 insertions(+), 7 deletions(-)
Title: 'eXtra' / 'eXperimental' Functionality for Robust Statistics
Description: Robustness -- 'eXperimental', 'eXtraneous', or 'eXtraordinary'
Functionality for Robust Statistics. Hence methods which are not well established,
often related to methods in package 'robustbase'. Amazingly, 'BACON()', originally by
Billor, Hadi, and Velleman (2000) <doi:10.1016/S0167-9473(99)00101-2>
has become established in places. The "barrow wheel" `rbwheel()` is from
Stahel and Mächler (2009) <doi:10.1111/j.1467-9868.2009.00706.x>.
Author: Martin Maechler [aut, cre] ,
Werner A. Stahel [aut],
Rolf Turner [ctb] ),
Ueli Oetliker [ctb] and mvBACON for S+),
Tobias Schoch [ctb]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustX versions 1.2-5 dated 2021-06-02 and 1.2-6 dated 2023-01-07
ChangeLog | 5 +++++ DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- build/partial.rdb |binary man/L1median.Rd | 2 +- tests/cov-ex.R | 18 ++++++++++-------- 6 files changed, 26 insertions(+), 19 deletions(-)
Title: Interactive Data Tables for R
Description: Interactive data tables for R, based on the 'React Table'
JavaScript library. Provides an HTML widget that can be used in 'R Markdown'
or 'Quarto' documents, 'Shiny' applications, or viewed from an R console.
Author: Greg Lin [aut, cre],
Tanner Linsley [ctb, cph] ,
Emotion team and other contributors [ctb, cph] ,
Kent Russell [ctb, cph] ,
Ramnath Vaidyanathan [ctb, cph] ,
Joe Cheng [ctb, cph] ,
JJ Allaire [ctb, cph] ,
Yihui Xie [ctb, cph] ,
Kenton Russell [ctb, c [...truncated...]
Maintainer: Greg Lin <glin@glin.io>
Diff between reactable versions 0.4.2 dated 2023-01-05 and 0.4.3 dated 2023-01-07
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ inst/htmlwidgets/reactable.yaml | 2 +- tests/testthat/test-reactable.R | 16 ++++++++++++++++ 5 files changed, 30 insertions(+), 8 deletions(-)
Title: Interface to 'pomdp-solve' for Partially Observable Markov
Decision Processes
Description: Installs an updated version of 'pomdp-solve', a program to solve Partially Observable Markov Decision Processes (POMDPs) using a variety of exact and approximate value iteration algorithms. A convenient R infrastructure is provided in the separate package pomdp. Kaelbling, Littman and Cassandra (1998) <doi:10.1016/S0004-3702(98)00023-X>.
Author: Michael Hahsler [aut, cph, cre]
,
Anthony R. Cassandra [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between pomdpSolve versions 1.0.1 dated 2022-10-19 and 1.0.2 dated 2023-01-07
DESCRIPTION | 12 ++++++------ MD5 | 20 +++++++++++--------- NEWS.md | 5 +++++ R/AAA_pomdpSolve-package.R |only R/pomdp_solve.R | 15 ++++++++------- build/partial.rdb |binary man/find_pomdp_solve.Rd | 15 ++++++++------- man/pomdpSolve-package.Rd |only src/pomdp-solve/pomdp-fg-options.c | 6 +++--- src/pomdp-solve/pomdp-fg-options.h | 2 +- src/pomdp-solve/pomdp-solve-options.c | 6 +++--- src/pomdp-solve/pomdp-solve-options.h | 2 +- 12 files changed, 46 insertions(+), 37 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] ,
MongoDB, Inc [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between mongolite versions 2.7.0 dated 2022-11-06 and 2.7.1 dated 2023-01-07
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 3 +++ src/bson/bson-memory.c | 2 +- src/mongoc/mongoc-config.h | 8 ++++++++ 5 files changed, 19 insertions(+), 8 deletions(-)
Title: Rmetrics - Chronological and Calendar Objects
Description: The 'timeDate' class fulfils the conventions of the ISO 8601
standard as well as of the ANSI C and POSIX standards. Beyond
these standards it provides the "Financial Center" concept
which allows to handle data records collected in different time
zones and mix them up to have always the proper time stamps with
respect to your personal financial center, or alternatively to the GMT
reference time. It can thus also handle time stamps from historical
data records from the same time zone, even if the financial
centers changed day light saving times at different calendar
dates.
Author: Diethelm Wuertz [aut] ,
Tobias Setz [aut],
Yohan Chalabi [aut],
Martin Maechler [ctb] ,
Joe W. Byers [ctb],
Georgi N. Boshnakov [cre, aut]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between timeDate versions 4021.107 dated 2022-12-08 and 4022.108 dated 2023-01-07
DESCRIPTION | 10 MD5 | 28 NAMESPACE | 1421 +- NEWS.md | 35 R/holiday-LONDON.R | 19 R/holiday-Listing.R | 2 R/methods-plot.R | 14 R/sysdata.rda |binary R/timeDate-DaylightSavingTime.R |23941 ++++++++-------------------------------- R/timeDate-generateDST.R | 129 R/timeDate-listFinCenter.R | 421 R/timeDate-rulesFinCenter.R | 7 inst/pkgdown.yml | 2 man/timeDate-listFinCenter.Rd | 10 man/timeDate-rulesFinCenter.Rd | 4 15 files changed, 5928 insertions(+), 20115 deletions(-)
Title: Selecting Variable Subsets
Description: A collection of functions which (i) assess the quality of variable subsets as surrogates for a full data set, in either an exploratory data analysis or in the context of a multivariate linear model, and (ii) search for subsets which are optimal under various criteria. Theoretical support for the heuristic search methods and exploratory data analysis criteria is in Cadima, Cerdeira, Minhoto (2003, <doi:10.1016/j.csda.2003.11.001>). Theoretical support for the leap and bounds algorithm and the criteria for the general multivariate linear model is in Duarte Silva (2001, <doi:10.1006/jmva.2000.1920>). There is a package vignette "subselect", which includes additional references.
Author: Jorge Orestes Cerdeira [aut],
Pedro Duarte Silva [aut],
Jorge Cadima [aut, cre],
Manuel Minhoto [aut]
Maintainer: Jorge Cadima <jcadima@isa.ulisboa.pt>
Diff between subselect versions 0.15.3 dated 2022-08-30 and 0.15.4 dated 2023-01-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/subselect.R | 1 - inst/doc/subselect.pdf |binary src/SR_datatrnsf.cpp | 2 +- 6 files changed, 10 insertions(+), 11 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Duncan Murdoch [aut, cre],
Daniel Adler [aut],
Oleg Nenadic [ctb],
Simon Urbanek [ctb],
Ming Chen [ctb],
Albrecht Gebhardt [ctb],
Ben Bolker [ctb],
Gabor Csardi [ctb],
Adam Strzelecki [ctb],
Alexander Senger [ctb],
The R Core Team [ctb, cph],
Dirk Ed [...truncated...]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rgl versions 0.110.2 dated 2022-09-26 and 0.111.6 dated 2023-01-07
DESCRIPTION | 18 +- MD5 | 95 +++++----- NAMESPACE | 85 ++++----- NEWS.md | 36 +++- R/buffer.R | 18 +- R/getscene.R | 2 R/material.R | 2 R/par3d.R | 8 R/r3d.rgl.R | 59 +++--- R/scene.R | 19 +- R/shiny.R | 4 build/vignette.rds |binary inst/doc/WebGL.html | 231 +++++++++++++------------- inst/doc/deprecation.R |only inst/doc/deprecation.Rmd |only inst/doc/deprecation.html |only inst/doc/pkgdown.html | 111 ++++++------ inst/doc/rgl.Rmd | 2 inst/doc/rgl.html | 140 +++++++-------- inst/doc/transparency.html | 111 ++++++------ inst/htmlwidgets/lib/rglClass/rglClass.min.js |only man/3dobjects.Rd | 40 +++- man/Buffer.Rd | 26 +- man/abclines.Rd | 2 man/as.rglscene.Rd | 2 man/bbox.Rd | 22 +- man/checkDeldir.Rd | 2 man/light.Rd | 2 man/material.Rd | 86 +++++++-- man/mesh3d.Rd | 2 man/par3d.Rd | 20 +- man/planes.Rd | 2 man/play3d.Rd | 2 man/primitive.Rd | 36 ---- man/setUserCallbacks.Rd | 64 +++++++ man/spin3d.Rd | 4 man/surface.Rd | 8 man/surface3d.Rd | 48 ++--- man/texts.Rd | 2 src/BBoxDeco.cpp | 6 src/Texture.cpp | 4 src/devicemanager.cpp | 4 src/fps.cpp | 2 src/gl2ps.c | 16 - src/gl2ps.h | 2 src/pixmap.cpp | 4 src/pngpixmap.h | 10 - src/subscene.cpp | 8 src/useNULL/Makevars | 4 vignettes/deprecation.Rmd |only vignettes/rgl.Rmd | 2 51 files changed, 767 insertions(+), 606 deletions(-)
Title: Generalized Linear Latent Variable Models
Description: Analysis of multivariate data using generalized linear latent variable models (gllvm).
Estimation is performed using either Laplace approximation method or variational approximation method implemented via TMB (Kristensen et al., (2016), <doi:10.18637/jss.v070.i05>).
For details see Niku et al. (2019a) <doi:10.1371/journal.pone.0216129> and
Niku et al. (2019b) <doi:10.1111/2041-210X.13303>.
Author: Jenni Niku [aut, cre],
Wesley Brooks [aut],
Riki Herliansyah [aut],
Francis K.C. Hui [aut],
Pekka Korhonen [aut],
Sara Taskinen [aut],
Bert van der Veen [aut],
David I. Warton [aut]
Maintainer: Jenni Niku <jenni.m.e.niku@jyu.fi>
Diff between gllvm versions 1.4.0 dated 2022-12-17 and 1.4.1 dated 2023-01-07
DESCRIPTION | 8 - MD5 | 58 ++++++------- NEWS.md | 8 + R/getResidualCov.gllvm.R | 4 R/gllvm.R | 8 - R/ordiplot.gllvm.R | 2 R/vcov.gllvm.R | 2 inst/CITATION | 22 ++--- inst/doc/vignette1.R | 8 - inst/doc/vignette1.Rmd | 22 ++--- inst/doc/vignette1.html | 46 +++++------ inst/doc/vignette2.html | 12 +- inst/doc/vignette2.rmd | 2 inst/doc/vignette3.html | 8 - inst/doc/vignette3.rmd | 4 inst/doc/vignette4.html | 12 +- inst/doc/vignette4.rmd | 6 - inst/doc/vignette5.html | 4 inst/doc/vignette6.html | 4 man/Skabbholmen.Rd | 2 man/eSpider.Rd | 2 man/getResidualCov.gllvm.Rd | 4 man/gllvm.Rd | 8 - man/ordiplot.gllvm.Rd | 2 man/vcov.gllvm.Rd | 2 src/gllvm.cpp | 184 +++++++++++++++++++++++--------------------- vignettes/vignette1.Rmd | 22 ++--- vignettes/vignette2.rmd | 2 vignettes/vignette3.rmd | 4 vignettes/vignette4.rmd | 6 - 30 files changed, 248 insertions(+), 230 deletions(-)
Title: Get Images Out of DICOM Format Quickly
Description: Provides tools to sort DICOM-format medical image files, and
convert them to NIfTI-1 format.
Author: Jon Clayden [aut, cre] ,
Chris Rorden [aut],
Martin J Fiedler [cph],
Cong Xu [cph],
Pascal Gloor [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between divest versions 0.10.2 dated 2022-01-11 and 0.10.3 dated 2023-01-07
DESCRIPTION | 12 +++---- LICENCE | 2 - MD5 | 12 +++---- NEWS | 6 +++ README.md | 2 - src/dcm2niix/nii_dicom.cpp | 10 +++--- src/dcm2niix/nii_dicom_batch.cpp | 60 +++++++++++++++++++-------------------- 7 files changed, 55 insertions(+), 49 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design for Combination Studies
Description: Phase I/II adaptive dose-finding design for combination
studies where toxicity rates are supposed to increase with both agents.
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Jacques-Henri Jourdan <jacques-henri.jourdan@normalesup.org>
Diff between dfcomb versions 3.0-0 dated 2019-03-19 and 3.1-1 dated 2023-01-07
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/dfcomb.R | 14 +++++++++++--- build/partial.rdb |binary man/CombIncrease_sim.Rd | 16 +++++++++------- src/arms.h | 2 +- src/dfcomb.h | 1 + src/logistic.cpp | 33 ++++++++++++++++++--------------- 8 files changed, 51 insertions(+), 37 deletions(-)
Title: Client for Delphi's 'COVIDcast Epidata' API
Description: Tools for Delphi's 'COVIDcast Epidata' API: data access, maps and
time series plotting, and basic signal processing. The API includes a
collection of numerous indicators relevant to the COVID-19 pandemic in the
United States, including official reports, de-identified aggregated medical
claims data, large-scale surveys of symptoms and public behavior, and
mobility data, typically updated daily and at the county level. All data
sources are documented at
<https://cmu-delphi.github.io/delphi-epidata/api/covidcast.html>.
Author: Taylor Arnold [aut],
Jacob Bien [aut],
Logan Brooks [aut],
Sarah Colquhoun [aut],
David Farrow [aut],
Jed Grabman [ctb],
Pedrito Maynard-Zhang [ctb],
Alex Reinhart [aut, cre] ,
Ryan Tibshirani [aut]
Maintainer: Alex Reinhart <areinhar@stat.cmu.edu>
Diff between covidcast versions 0.4.3 dated 2022-10-06 and 0.4.5 dated 2023-01-07
DESCRIPTION | 10 MD5 | 54 NEWS.md | 10 R/plot.R | 33 inst/doc/correlation-utils.html | 13 inst/doc/covidcast.html | 75 inst/doc/external-data.html | 27 inst/doc/multi-signals.html | 13 inst/doc/plotting-signals.R | 10 inst/doc/plotting-signals.Rmd | 12 inst/doc/plotting-signals.html | 175 tests/testthat/_snaps/plot/bubble-plot-with-0-and-missing.svg | 114 tests/testthat/_snaps/plot/default-county-choropleth-with-alaska.svg | 6 tests/testthat/_snaps/plot/default-county-choropleth-with-include.svg | 162 tests/testthat/_snaps/plot/default-county-choropleth.svg | 1252 - tests/testthat/_snaps/plot/default-hrr-choropleth-with-include.svg | 106 tests/testthat/_snaps/plot/default-hrr-choropleth.svg | 768 - tests/testthat/_snaps/plot/default-msa-choropleth-with-include.svg | 108 tests/testthat/_snaps/plot/default-msa-choropleth.svg | 906 - tests/testthat/_snaps/plot/default-state-choropleth-with-include.svg | 16 tests/testthat/_snaps/plot/default-state-choropleth-with-range.svg | 228 tests/testthat/_snaps/plot/default-state-choropleth.svg | 228 tests/testthat/_snaps/plot/simple-county-bubble-plot.svg | 6414 +++++----- tests/testthat/_snaps/plot/simple-line-graph.svg | 8 tests/testthat/_snaps/plot/state-choropleth-with-no-metadata.svg | 228 tests/testthat/_snaps/plot/state-line-graph-with-stderrs.svg | 24 tests/testthat/testthat-problems.rds |binary vignettes/plotting-signals.Rmd | 12 28 files changed, 5514 insertions(+), 5498 deletions(-)
Title: Visualize Downloads from 'CRAN' Packages
Description: Visualize the trends and historical downloads from packages in the 'CRAN' repository. Data is obtained by using the 'API' to query the database from the 'RStudio' 'CRAN' mirror.
Author: Marcelo Ponce [aut, cre]
Maintainer: Marcelo Ponce <m.ponce@utoronto.ca>
Diff between Visualize.CRAN.Downloads versions 1.0.1 dated 2021-04-28 and 1.0.2 dated 2023-01-07
DESCRIPTION | 10 ++--- MD5 | 14 +++---- NEWS | 3 + R/plotting-utils.R | 2 - README.md | 18 ++++++--- inst/doc/Visualize.CRAN.Downloads.html | 61 +++++++++++++++++---------------- man/interactivePlots.Rd | 2 - vignettes/man/interactivePlots.Rd | 2 - 8 files changed, 62 insertions(+), 50 deletions(-)
More information about Visualize.CRAN.Downloads at CRAN
Permanent link
Title: Geographic Data Analysis and Modeling
Description: Reading, writing, manipulating, analyzing and modeling of spatial data. This package has been superseded by the "terra" package <https://CRAN.R-project.org/package=terra>.
Author: Robert J. Hijmans [cre, aut] ,
Jacob van Etten [ctb],
Michael Sumner [ctb],
Joe Cheng [ctb],
Dan Baston [ctb],
Andrew Bevan [ctb],
Roger Bivand [ctb],
Lorenzo Busetto [ctb],
Mort Canty [ctb],
Ben Fasoli [ctb],
David Forrest [ctb],
Aniruddha Ghosh [ct [...truncated...]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between raster versions 3.6-11 dated 2022-11-28 and 3.6-13 dated 2023-01-07
DESCRIPTION | 10 MD5 | 65 +- R/AAAClasses.R | 589 ++++++++++---------- R/AAgeneric_functions.R | 356 ++++++------ R/brick.R | 608 ++++++++++----------- R/coerce.R | 1292 ++++++++++++++++++++++----------------------- R/extractPolygons.R | 804 ++++++++++++++-------------- R/factor.R | 422 +++++++------- R/netCDFtoRasterCD.R | 8 R/project.R | 150 ++--- R/projectRaster.R | 726 ++++++++++++------------- R/projection.R | 490 ++++++++--------- R/raster.R | 962 ++++++++++++++++----------------- R/rasterFromFile.R | 254 ++++---- R/rasterFromGDAL.R | 772 +++++++++++++-------------- R/rasterFromRasterFile.R | 700 ++++++++++++------------ R/rasterToPoints.R | 200 +++---- R/rasterToPolygons.R | 222 +++---- R/rasterizeLines.R | 738 ++++++++++++------------- R/rasterizePolygons.R | 1340 +++++++++++++++++++++++------------------------ R/readCells.R | 402 +++++++------- R/readCellsGDAL.R | 242 ++++---- R/readRasterBrick.R | 420 +++++++------- R/readRasterLayer.R | 362 ++++++------ R/sparse.R | 480 ++++++++-------- R/srs.R |only R/stack.R | 504 ++++++++--------- R/update.R | 1138 +++++++++++++++++++-------------------- R/writeAllAscii.R | 92 +-- R/writeRaster.R | 466 ++++++++-------- R/writeStartStop.R | 218 +++---- R/writeStartStopGDAL.R | 264 ++++----- build/partial.rdb |binary man/getData.Rd | 152 ++--- 34 files changed, 7736 insertions(+), 7712 deletions(-)
Title: High Dimensional Time Series Analysis Tools
Description: Procedures for high-dimensional time series analysis including factor analysis proposed by Lam and Yao (2012) <doi:10.1214/12-AOS970> and Chang, Guo and Yao (2015) <doi:10.1016/j.jeconom.2015.03.024>, martingale difference test proposed by Chang, Jiang and Shao (2021) preprint, principal component analysis proposed by Chang, Guo and Yao (2018) <doi:10.1214/17-AOS1613>, identifying conintegration proposed by Zhang, Robinson and Yao (2019) <doi:10.1080/01621459.2018.1458620>, unit root test proposed by Chang, Cheng and Yao (2021) <doi:10.1093/biomet/asab034> and white noise test proposed by Chang, Yao and Zhou (2017) <doi:10.1093/biomet/asw066>.
Author: Chen Lin [aut, cre],
Jinyuan Chang [aut],
Qiwei Yao [aut]
Maintainer: Chen Lin <linchen@smail.swufe.edu.cn>
Diff between HDTSA versions 1.0.1 dated 2021-11-08 and 1.0.2 dated 2023-01-07
DESCRIPTION | 16 +++----- MD5 | 18 +++++---- NAMESPACE | 4 ++ R/PCA4_TS.R | 3 + R/Tools_martingale.R | 92 +++++++++++++++++++++++++++++++++++++-------------- R/coint.R |only R/permutationMax.R | 34 +++++++++++------- man/MartG_test.Rd | 14 ++++++- man/PCA4_TS.Rd | 3 + man/coint.Rd |only src/RcppExports.cpp | 5 ++ 11 files changed, 130 insertions(+), 59 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) simulation and inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Covariance functions for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. See the URL for the papers associ [...truncated...]
Author: Moreno Bevilacqua [aut, cre] ,
Victor Morales-Onate [aut] ,
Christian Caamano-Carrillo [aut]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 1.0.5 dated 2022-12-05 and 1.0.6 dated 2023-01-07
DESCRIPTION | 8 +- MD5 | 20 +++--- R/GeoCompositeLik2.R | 5 - R/GeoFit.r | 10 ++- R/GeoLik.r | 2 R/Utility.r | 24 ++++--- man/GeoFit.Rd | 76 ++++++++++++++++++++---- src/CorrelationFunction.c | 145 ++++++++++++++++++++++++++++++++++++++++------ src/GeoModels_init.c | 4 + src/Utility.c | 13 ++-- src/header.h | 2 11 files changed, 245 insertions(+), 64 deletions(-)
Title: A Graphical EDA Tool
Description: An automated graphical exploratory data analysis (EDA) tool that introduces:
a.) wideplot graphics for exploring the structure of a dataset through a grid of variables
and graphic types.
b.) longplot graphics, which present the entire catalog of available graphics for representing
a particular variable using a grid of graphic types and variations on these types.
c.) plotup function, which presents a particular graphic for a specific variable of a dataset.
The plotup() function also makes it possible to obtain the code used to generate the graphic,
meaning that the user can adjust its properties as needed.
d.) matrixplot graphics that is a grid of a particular graphic showing bivariate relationships
between all pairs of variables of a certain(s) type(s) in a multivariate data set.
Author: Pere Millan-Martinez [aut, cre],
Ramon Oller Pique [ctb]
Maintainer: Pere Millan-Martinez <info@sciencegraph.org>
Diff between brinton versions 0.2.6 dated 2022-07-16 and 0.2.7 dated 2023-01-07
brinton-0.2.6/brinton/inst/doc/specimen.R |only brinton-0.2.6/brinton/inst/doc/specimen.Rmd |only brinton-0.2.6/brinton/inst/doc/specimen.html |only brinton-0.2.6/brinton/man/figures/README-plotspane-1.png |only brinton-0.2.6/brinton/man/figures/README-plotspane1-1.png |only brinton-0.2.6/brinton/man/figures/README-plotspane2-1.png |only brinton-0.2.6/brinton/man/figures/README-plotup1-1.png |only brinton-0.2.6/brinton/man/figures/README-plotup2-1.png |only brinton-0.2.6/brinton/vignettes/figures/readme_01s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_02s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_03s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_04s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_05s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_06s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_07s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_08s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_09s.png |only brinton-0.2.6/brinton/vignettes/specimen.Rmd |only brinton-0.2.7/brinton/DESCRIPTION | 8 brinton-0.2.7/brinton/MD5 | 87 +- brinton-0.2.7/brinton/NAMESPACE | 2 brinton-0.2.7/brinton/R/05_aux_functions.R | 44 - brinton-0.2.7/brinton/R/10_themes.R | 12 brinton-0.2.7/brinton/R/20_basic_plots.R | 19 brinton-0.2.7/brinton/R/40_outputs.R | 1 brinton-0.2.7/brinton/R/50_longplot.R | 369 +++++----- brinton-0.2.7/brinton/R/60_wideplot.R | 71 + brinton-0.2.7/brinton/R/70_plotup.R | 238 ++++-- brinton-0.2.7/brinton/R/80_matrixplot.R | 138 ++- brinton-0.2.7/brinton/README.md | 33 brinton-0.2.7/brinton/build/vignette.rds |binary brinton-0.2.7/brinton/inst/doc/brinton.R | 19 brinton-0.2.7/brinton/inst/doc/brinton.Rmd | 61 + brinton-0.2.7/brinton/inst/doc/brinton.html | 145 ++- brinton-0.2.7/brinton/man/figures/plotup1-1.png |only brinton-0.2.7/brinton/man/figures/plotup2-1.png |only brinton-0.2.7/brinton/man/figures/readme_01ss.png |only brinton-0.2.7/brinton/man/figures/readme_02ss.png |only brinton-0.2.7/brinton/man/figures/readme_03ss.png |only brinton-0.2.7/brinton/man/figures/readme_04ss.png |only brinton-0.2.7/brinton/man/figures/readme_05ss.png |only brinton-0.2.7/brinton/man/figures/readme_06ss.png |only brinton-0.2.7/brinton/man/figures/readme_07ss.png |only brinton-0.2.7/brinton/man/figures/readme_08ss.png |only brinton-0.2.7/brinton/man/figures/readme_09ss.png |only brinton-0.2.7/brinton/man/longplot.Rd | 4 brinton-0.2.7/brinton/man/matrixplot.Rd | 8 brinton-0.2.7/brinton/man/plotup.Rd | 12 brinton-0.2.7/brinton/man/wideplot.Rd | 7 brinton-0.2.7/brinton/vignettes/brinton.Rmd | 61 + brinton-0.2.7/brinton/vignettes/figures/fac-num_10-1.png |binary brinton-0.2.7/brinton/vignettes/figures/fac-num_11-1.png |binary brinton-0.2.7/brinton/vignettes/figures/fac-num_12-1.png |binary brinton-0.2.7/brinton/vignettes/figures/fac-num_13-1.png |binary brinton-0.2.7/brinton/vignettes/figures/matrixplot2_esoph.png |only brinton-0.2.7/brinton/vignettes/figures/matrixplot_esoph.png |only brinton-0.2.7/brinton/vignettes/figures/num-ord_10-1.png |binary brinton-0.2.7/brinton/vignettes/figures/num-ord_11-1.png |binary brinton-0.2.7/brinton/vignettes/figures/num-ord_12-1.png |binary brinton-0.2.7/brinton/vignettes/figures/num-ord_13-1.png |binary 60 files changed, 847 insertions(+), 492 deletions(-)
Title: Individual Based Model Population Simulation
Description: Simulation of the random evolution of structured population dynamics, called stochastic Individual Based Models (IBMs) (see e.g. Ferrière and Tran (2009) <doi:10.1051/proc/2009033>, Bansaye and Méléard (2015) <doi:10.1007/978-3-319-21711-6>, Boumezoued (2016)).
The package allows users to simulate the random evolution of a population in which individuals are characterised by their date of birth, a set of attributes, and their potential date of death.
Author: Daphne Giorgi [aut, cre],
Sarah Kaakai [aut],
Vincent Lemaire [aut]
Maintainer: Daphne Giorgi <daphne.giorgi@sorbonne-universite.fr>
Diff between IBMPopSim versions 0.3.1 dated 2020-11-10 and 0.4.3 dated 2023-01-07
IBMPopSim-0.3.1/IBMPopSim/R/tables.R |only IBMPopSim-0.3.1/IBMPopSim/data/datalist |only IBMPopSim-0.4.3/IBMPopSim/DESCRIPTION | 17 IBMPopSim-0.4.3/IBMPopSim/MD5 | 196 +++++----- IBMPopSim-0.4.3/IBMPopSim/NAMESPACE | 13 IBMPopSim-0.4.3/IBMPopSim/NEWS.md | 13 IBMPopSim-0.4.3/IBMPopSim/R/RcppExports.R |only IBMPopSim-0.4.3/IBMPopSim/R/events.R | 51 ++ IBMPopSim-0.4.3/IBMPopSim/R/functions.R | 5 IBMPopSim-0.4.3/IBMPopSim/R/mkcpp_from_template.R | 54 ++ IBMPopSim-0.4.3/IBMPopSim/R/model.R | 14 IBMPopSim-0.4.3/IBMPopSim/R/popsim.R | 17 IBMPopSim-0.4.3/IBMPopSim/R/pyramid.R | 52 +- IBMPopSim-0.4.3/IBMPopSim/R/roxygen_description.R | 14 IBMPopSim-0.4.3/IBMPopSim/R/utils.R | 58 ++ IBMPopSim-0.4.3/IBMPopSim/README.md | 2 IBMPopSim-0.4.3/IBMPopSim/build/vignette.rds |binary IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim.Rmd | 87 ++-- IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim.pdf |binary IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim_cpp.Rmd | 8 IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim_cpp.pdf |binary IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim_human_pop.Rmd | 49 -- IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim_human_pop.pdf |binary IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim_human_pop_IMD.Rmd | 132 +----- IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim_human_pop_IMD.pdf |binary IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim_insurance_portfolio.Rmd | 56 -- IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim_insurance_portfolio.pdf |binary IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim_interaction.Rmd | 52 +- IBMPopSim-0.4.3/IBMPopSim/inst/doc/IBMPopSim_interaction.pdf |binary IBMPopSim-0.4.3/IBMPopSim/inst/include/event_full_interaction_template.cpp | 30 - IBMPopSim-0.4.3/IBMPopSim/inst/include/event_individual_template.cpp | 18 IBMPopSim-0.4.3/IBMPopSim/inst/include/event_inhomogeneous_poisson_template.cpp | 10 IBMPopSim-0.4.3/IBMPopSim/inst/include/event_poisson_template.cpp | 10 IBMPopSim-0.4.3/IBMPopSim/inst/include/event_random_interaction_template.cpp | 24 - IBMPopSim-0.4.3/IBMPopSim/inst/include/popsim_template.cpp | 18 IBMPopSim-0.4.3/IBMPopSim/inst/include/population.hpp | 1 IBMPopSim-0.4.3/IBMPopSim/man/assertCharacteristics.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/assertParameters.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/assertPopulation.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/assertPyramid.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/capitalize.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/check_intensity_code.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/check_interaction_code.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/check_kernel_code.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/death_table.Rd | 13 IBMPopSim-0.4.3/IBMPopSim/man/details_cpp.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/details_intensity_code.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/details_interaction_code.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/details_kernel_code.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/details_type_event.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/exposure_table.Rd | 11 IBMPopSim-0.4.3/IBMPopSim/man/get_Ctype.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/get_Rtype.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/has_event_type.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/id_complete.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/merge_pop_withid.Rd | 6 IBMPopSim-0.4.3/IBMPopSim/man/mk_event_individual.Rd | 2 IBMPopSim-0.4.3/IBMPopSim/man/mk_event_interaction.Rd | 2 IBMPopSim-0.4.3/IBMPopSim/man/mk_individual_type.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/mkcpp_declaration_individual.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/mkcpp_definition_events.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/mkcpp_event.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/mkcpp_initialisation_population.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/mkcpp_output_population.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/mkcpp_parameters.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/mkcpp_popsim.Rd |only IBMPopSim-0.4.3/IBMPopSim/man/popsim.Rd | 8 IBMPopSim-0.4.3/IBMPopSim/man/population_alive.Rd | 2 IBMPopSim-0.4.3/IBMPopSim/src |only IBMPopSim-0.4.3/IBMPopSim/vignettes/IBMPopSim.Rmd | 87 ++-- IBMPopSim-0.4.3/IBMPopSim/vignettes/IBMPopSim.Rmd.orig | 10 IBMPopSim-0.4.3/IBMPopSim/vignettes/IBMPopSim_cpp.Rmd | 8 IBMPopSim-0.4.3/IBMPopSim/vignettes/IBMPopSim_human_pop.Rmd | 49 -- IBMPopSim-0.4.3/IBMPopSim/vignettes/IBMPopSim_human_pop.Rmd.orig | 8 IBMPopSim-0.4.3/IBMPopSim/vignettes/IBMPopSim_human_pop_IMD.Rmd | 132 +----- IBMPopSim-0.4.3/IBMPopSim/vignettes/IBMPopSim_human_pop_IMD.Rmd.orig | 27 - IBMPopSim-0.4.3/IBMPopSim/vignettes/IBMPopSim_insurance_portfolio.Rmd | 56 -- IBMPopSim-0.4.3/IBMPopSim/vignettes/IBMPopSim_insurance_portfolio.Rmd.orig | 9 IBMPopSim-0.4.3/IBMPopSim/vignettes/IBMPopSim_interaction.Rmd | 52 +- IBMPopSim-0.4.3/IBMPopSim/vignettes/IBMPopSim_interaction.Rmd.orig | 2 IBMPopSim-0.4.3/IBMPopSim/vignettes/hpIMD_birth_intensities-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hpIMD_compo_fem-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hpIMD_compo_fem2-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hpIMD_compo_fem2-2.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hpIMD_death_rate-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hpIMD_df-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hpIMD_pyramids-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hpIMD_pyramids-2.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hp_birth_distrib-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hp_death_rate_1-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hp_intensities-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hp_log_death-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hp_pop_init-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hp_pop_init_1e6-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hp_pyramid_50-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hp_pyramids-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/hp_pyramids2-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/insur_LeeCarter_risk1-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/insur_cohort-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/insur_evol_mortality-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/insur_forecast-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/insur_mortality_rates-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/insur_pyr_group-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/insur_pyramid-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/inter_output-1.png |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/inter_output2-1.png |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/inter_output3-1.png |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/inter_pyramid-1.png |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/main_plot_30-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/main_prob_subgroup1-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/plot_piecewise-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/plot_stepfun-1.pdf |binary IBMPopSim-0.4.3/IBMPopSim/vignettes/precompile.R | 19 113 files changed, 750 insertions(+), 754 deletions(-)
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, ANOVA, FREQ, and UNIVARIATE. Some R packages provide type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.9.3 dated 2022-11-06 and 0.9.4 dated 2023-01-07
sasLM-0.9.3/sasLM/inst/doc/Report-Different-Simplest2211061531.pdf |only sasLM-0.9.3/sasLM/inst/doc/Report-NOT-OKs2211061532.pdf |only sasLM-0.9.3/sasLM/inst/doc/Validation-Report-GLM-2211061533.pdf |only sasLM-0.9.4/sasLM/DESCRIPTION | 6 +-- sasLM-0.9.4/sasLM/MD5 | 20 +++++----- sasLM-0.9.4/sasLM/R/BasicUtil.R | 4 +- sasLM-0.9.4/sasLM/R/OR.R | 1 sasLM-0.9.4/sasLM/R/ORmn.R | 1 sasLM-0.9.4/sasLM/R/ORmn1.R | 2 - sasLM-0.9.4/sasLM/inst/NEWS.Rd | 6 +++ sasLM-0.9.4/sasLM/inst/doc/Report-Different-Simplest2301071812.pdf |only sasLM-0.9.4/sasLM/inst/doc/Report-NOT-OKs2301071813.pdf |only sasLM-0.9.4/sasLM/inst/doc/Validation-Report-GLM-2301071814.pdf |only sasLM-0.9.4/sasLM/inst/doc/sasLM-manual.pdf |binary 14 files changed, 24 insertions(+), 16 deletions(-)
Title: Meta-Analysis using Structural Equation Modeling
Description: A collection of functions for conducting meta-analysis using a
structural equation modeling (SEM) approach via the 'OpenMx' and
'lavaan' packages. It also implements various procedures to
perform meta-analytic structural equation modeling on the
correlation and covariance matrices, see Cheung (2015)
<doi:10.3389/fpsyg.2014.01521>.
Author: Mike Cheung [aut, cre]
Maintainer: Mike Cheung <mikewlcheung@nus.edu.sg>
Diff between metaSEM versions 1.2.5.1 dated 2021-05-17 and 1.3.0 dated 2023-01-07
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Title: An Introduction to Statistics for Geoscientists
Description: A collection of datasets and simplified functions for an introductory (geo)statistics module at University College London. Provides functionality for compositional, directional and spatial data, including ternary diagrams, Wulff and Schmidt stereonets, and ordinary kriging interpolation. Implements logistic and (additive and centred) logratio transformations. Computes vector averages and concentration parameters for the von-Mises distribution. Includes a collection of natural and synthetic fractals, and a simulator for deterministic chaos using a magnetic pendulum example. The main purpose of these functions is pedagogical. Researchers can find more complete alternatives for these tools in other packages such as 'compositions', 'robCompositions', 'sp', 'gstat' and 'RFOC'. All the functions are written in plain R, with no compiled code and a minimal number of dependencies. Theoretical background and worked examples are available at <https://tinyurl.com/UCLgeostats/>.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between geostats versions 1.5 dated 2022-08-13 and 1.6 dated 2023-01-07
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Title: Evidential Distance-Based Classification
Description: Different evidential classifiers, which provide
outputs in the form of Dempster-Shafer mass functions. The methods are:
the evidential K-nearest neighbor rule, the evidential neural
network, radial basis function neural networks, logistic regression,
feed-forward neural networks.
Author: Thierry Denoeux
Maintainer: Thierry Denoeux <tdenoeux@utc.fr>
Diff between evclass versions 1.1.1 dated 2017-03-20 and 2.0.0 dated 2023-01-07
DESCRIPTION | 23 - MD5 | 71 ++- NAMESPACE | 9 NEWS |only R/EkNNfit.R | 2 R/EkNNinit.R | 2 R/EkNNval.R | 2 R/RBFfit.R |only R/RBFinit.R |only R/RBFval.R |only R/calcAB.R |only R/calcm.R |only R/decision.R | 2 R/evclass.R | 29 + R/foncgradr2n.R | 4 R/gradRBF.R |only R/ionosphere-data.R | 2 R/likRBF.R |only R/proDSfit.R | 8 R/proDSinit.R | 10 R/proDSval.R | 4 build/vignette.rds |binary inst/doc/Introduction.R | 99 +++- inst/doc/Introduction.Rmd | 135 ++++++ inst/doc/Introduction.html | 941 ++++++++++++++++++++++++++++++++++++--------- man/EkNNfit.Rd | 15 man/EkNNinit.Rd | 2 man/EkNNval.Rd | 2 man/RBFfit.Rd |only man/RBFinit.Rd |only man/RBFval.Rd |only man/calcAB.Rd |only man/calcm.Rd |only man/decision.Rd | 10 man/evclass.Rd | 30 + man/glass.Rd | 6 man/ionosphere.Rd | 8 man/proDSfit.Rd | 20 man/proDSinit.Rd | 10 man/proDSval.Rd | 2 man/vehicles.Rd | 6 vignettes/Introduction.Rmd | 135 ++++++ vignettes/tdenoeux.bib | 20 43 files changed, 1286 insertions(+), 323 deletions(-)
Title: Hidden Hybrid Markov/Semi-Markov Model Fitting
Description: Develops algorithms for fitting, prediction, simulation
and initialization of the hidden hybrid Markov/semi-Markov model,
introduced by Guedon (2005) <doi:10.1016/j.csda.2004.05.033>,
which also includes several tools for handling missing data,
nonparametric mixture of B-splines emissions (Langrock et al., 2015
<doi:10.1111/biom.12282>), fitting regime switching regression
(Kim et al., 2008 <doi:10.1016/j.jeconom.2007.10.002>) and auto-regressive
hidden hybrid Markov/semi-Markov model, spline-based nonparametric
estimation of additive state-switching models
(Langrock et al., 2018 <doi:10.1111/stan.12133>)
and many other useful tools
(read for more description: Amini et al., 2022 <doi:10.1007/s00180-022-01248-x> and its
arxiv version: <arXiv:2109.12489>).
Author: Morteza Amini [aut, cre, cph],
Afarin Bayat [aut],
Reza Salehian [aut]
Maintainer: Morteza Amini <morteza.amini@ut.ac.ir>
Diff between hhsmm versions 0.3.3 dated 2022-08-05 and 0.3.4 dated 2023-01-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/rmixar.R | 8 ++++---- R/rmixlm.R | 8 ++++---- 4 files changed, 15 insertions(+), 15 deletions(-)