Title: Actuarial Functions for Non-Life Insurance Modelling
Description: Assists actuaries and other insurance modellers in pricing,
reserving and capital modelling for non-life insurance and
reinsurance modelling. Provides functions that help model
excess levels, capping and pure Incurred but not reported
claims (pure IBNR).
Includes capped mean, exposure curves and increased limit
factor curves (ILFs) for LogNormal, Gamma, Pareto, Sliced
LogNormal-Pareto and Sliced Gamma-Pareto distributions.
Includes mean, probability density function (pdf), cumulative
probability function (cdf) and inverse cumulative probability
function for Sliced LogNormal-Pareto and Sliced Gamma-Pareto
distributions.
Includes calculating pure IBNR exposure with LogNormal and
Gamma distribution for reporting delay.
Includes a shiny tool to simulate insurance claims.
Author: Yiannis Parizas [aut, cre]
Maintainer: Yiannis Parizas <yiannis.parizas@gmail.com>
Diff between NetSimR versions 0.1.1 dated 2021-04-21 and 0.1.2 dated 2023-01-17
DESCRIPTION | 13 MD5 | 46 ++- NAMESPACE | 46 ++- R/Gamma.R | 5 R/LogNormal.R | 5 R/Pareto.R | 4 R/ShinySimulatorGlobal.R |only R/ShinySimulatorServer.R |only R/ShinySimulatorUI.R |only R/SlicecdGammaPareto.R | 7 R/SlicecdLogNormalPareto.R | 7 README.md | 20 - build/vignette.rds |binary inst/doc/CappedMean.Rmd | 4 inst/doc/CappedMean.html | 328 +++++++++++++--------- inst/doc/PureIBNR.html | 459 +++++++++++++++++--------------- inst/doc/SlicedDistributions.html | 303 ++++++++++++--------- inst/rmd |only man/apply_deductible_limit.Rd |only man/apply_severity_cap.Rd |only man/distributionClass-class.Rd |only man/freq_dist_options.Rd |only man/freq_dist_parameter_placeholders.Rd |only man/max_number_of_pareto_slices.Rd |only man/reinsurance_structures_options.Rd |only man/rpareto.Rd |only man/run_shiny_simulator.Rd |only man/sev_dist_options.Rd |only man/sev_dist_parameter_placeholders.Rd |only man/shiny_simulator_server.Rd |only man/shiny_simulator_ui.Rd |only man/simulate_function.Rd |only vignettes/CappedMean.Rmd | 4 33 files changed, 754 insertions(+), 497 deletions(-)
Title: A Parametric Method for Generating Synthetic Data
Description: Generates synthetic data distributions to enable testing various modelling techniques in ways that real data does not allow. Noise can be added in a controlled manner such that the data seems real. This methodology is generic and therefore benefits both the academic and industrial research.
Author: Sidharth Macherla [aut, cre]
Maintainer: Sidharth Macherla <msidharthrasik@gmail.com>
Diff between conjurer versions 1.6.0 dated 2023-01-11 and 1.7.0 dated 2023-01-17
DESCRIPTION | 8 MD5 | 30 - NAMESPACE | 1 NEWS.md | 5 R/buildId.R |only R/buildNum.R | 2 R/genIndepDepJson.R | 36 + build/vignette.rds |binary inst/doc/industry_example.R |only inst/doc/industry_example.Rmd |only inst/doc/industry_example.html |only inst/doc/introduction_to_conjurer.R | 148 +------ inst/doc/introduction_to_conjurer.Rmd | 296 +++----------- inst/doc/introduction_to_conjurer.html | 693 +++++++++------------------------ man/buildId.Rd |only man/buildNum.Rd | 2 man/genIndepDepJson.Rd | 4 vignettes/industry_example.Rmd |only vignettes/introduction_to_conjurer.Rmd | 296 +++----------- 19 files changed, 440 insertions(+), 1081 deletions(-)
Title: Stability-enHanced Approaches using Resampling Procedures
Description: In stability selection (N Meinshausen, P Bühlmann (2010) <doi:10.1111/j.1467-9868.2010.00740.x>) and consensus clustering (S Monti et al (2003) <doi:10.1023/A:1023949509487>), resampling techniques are used to enhance the reliability of the results. In this package, hyper-parameters are calibrated by maximising model stability, which is measured by the negative log-likelihood under the null hypothesis that all selection (or co-membership) probabilities are identical (B Bodinier et al (2021) <arXiv:2106.02521>). Functions are readily implemented for the use of LASSO regression, sparse PCA, sparse (group) PLS or graphical LASSO in stability selection, and hierarchical clustering, partitioning around medoids, K means or Gaussian mixture models in consensus clustering.
Author: Barbara Bodinier [aut, cre]
Maintainer: Barbara Bodinier <b.bodinier@imperial.ac.uk>
Diff between sharp versions 1.2.1 dated 2022-12-09 and 1.3.0 dated 2023-01-17
sharp-1.2.1/sharp/R/s3_classes.R |only sharp-1.2.1/sharp/man/Adjacency.Rd |only sharp-1.2.1/sharp/man/Argmax.Rd |only sharp-1.2.1/sharp/man/PlotIncremental.Rd |only sharp-1.2.1/sharp/man/SelectedVariables.Rd |only sharp-1.3.0/sharp/DESCRIPTION | 24 sharp-1.3.0/sharp/MD5 | 120 +- sharp-1.3.0/sharp/NAMESPACE | 17 sharp-1.3.0/sharp/NEWS.md | 9 sharp-1.3.0/sharp/R/algorithms.R | 110 + sharp-1.3.0/sharp/R/bi_selection.R | 86 - sharp-1.3.0/sharp/R/calibration.R | 490 +------- sharp-1.3.0/sharp/R/check.R | 167 ++ sharp-1.3.0/sharp/R/clustering.R |only sharp-1.3.0/sharp/R/clustering_models.R |only sharp-1.3.0/sharp/R/ensemble.R | 42 sharp-1.3.0/sharp/R/explanatory_performance.R | 891 +++------------- sharp-1.3.0/sharp/R/graphical_model.R | 5 sharp-1.3.0/sharp/R/parallelisation.R | 88 + sharp-1.3.0/sharp/R/s3_coef.R |only sharp-1.3.0/sharp/R/s3_plot.R |only sharp-1.3.0/sharp/R/s3_predict.R |only sharp-1.3.0/sharp/R/s3_print.R |only sharp-1.3.0/sharp/R/s3_summary.R |only sharp-1.3.0/sharp/R/selection_performance.R | 196 +-- sharp-1.3.0/sharp/R/sharp-package.R | 36 sharp-1.3.0/sharp/R/stability_output.R |only sharp-1.3.0/sharp/R/stability_score.R | 135 ++ sharp-1.3.0/sharp/R/utils.R | 38 sharp-1.3.0/sharp/R/variable_selection.R | 4 sharp-1.3.0/sharp/README.md | 58 - sharp-1.3.0/sharp/build/partial.rdb |binary sharp-1.3.0/sharp/inst/WORDLIST | 16 sharp-1.3.0/sharp/man/ArgmaxId.Rd | 39 sharp-1.3.0/sharp/man/BiSelection.Rd | 88 - sharp-1.3.0/sharp/man/CalibrationCurve.Rd | 3 sharp-1.3.0/sharp/man/CalibrationPlot.Rd | 72 - sharp-1.3.0/sharp/man/CheckInputClustering.Rd |only sharp-1.3.0/sharp/man/Clustering.Rd |only sharp-1.3.0/sharp/man/ClusteringAlgo.Rd |only sharp-1.3.0/sharp/man/ClusteringPerformance.Rd |only sharp-1.3.0/sharp/man/CoMembership.Rd |only sharp-1.3.0/sharp/man/Combine.Rd | 38 sharp-1.3.0/sharp/man/ConsensusScore.Rd |only sharp-1.3.0/sharp/man/DBSCANClustering.Rd |only sharp-1.3.0/sharp/man/EnsemblePredictions.Rd | 37 sharp-1.3.0/sharp/man/ExplanatoryPerformance.Rd | 172 --- sharp-1.3.0/sharp/man/FDP.Rd | 1 sharp-1.3.0/sharp/man/GMMClustering.Rd |only sharp-1.3.0/sharp/man/GraphicalModel.Rd | 5 sharp-1.3.0/sharp/man/HierarchicalClustering.Rd |only sharp-1.3.0/sharp/man/Incremental.Rd | 175 --- sharp-1.3.0/sharp/man/KMeansClustering.Rd |only sharp-1.3.0/sharp/man/PAMClustering.Rd |only sharp-1.3.0/sharp/man/PFER.Rd | 1 sharp-1.3.0/sharp/man/PenalisedGraphical.Rd | 1 sharp-1.3.0/sharp/man/PenalisedRegression.Rd | 1 sharp-1.3.0/sharp/man/Refit.Rd | 67 - sharp-1.3.0/sharp/man/SelectionPerformance.Rd | 59 - sharp-1.3.0/sharp/man/SelectionPerformanceGraph.Rd | 51 sharp-1.3.0/sharp/man/SelectionProportions.Rd | 88 - sharp-1.3.0/sharp/man/SelectionProportionsGraphical.Rd | 6 sharp-1.3.0/sharp/man/SelectionProportionsRegression.Rd | 6 sharp-1.3.0/sharp/man/SerialClustering.Rd |only sharp-1.3.0/sharp/man/StabilityMetrics.Rd | 1 sharp-1.3.0/sharp/man/StabilityScore.Rd | 18 sharp-1.3.0/sharp/man/Stable.Rd |only sharp-1.3.0/sharp/man/VariableSelection.Rd | 5 sharp-1.3.0/sharp/man/WeightBoxplot.Rd |only sharp-1.3.0/sharp/man/plot.clustering.Rd |only sharp-1.3.0/sharp/man/plot.incremental.Rd |only sharp-1.3.0/sharp/man/plot.roc_band.Rd | 47 sharp-1.3.0/sharp/man/plot.variable_selection.Rd |only sharp-1.3.0/sharp/man/predict.variable_selection.Rd |only sharp-1.3.0/sharp/man/sharp-package.Rd | 36 sharp-1.3.0/sharp/tests |only 76 files changed, 1382 insertions(+), 2167 deletions(-)
Title: Kriging Models using the 'libKriging' Library
Description: Interface to 'libKriging' 'C++' library <https://github.com/libKriging> that should
provide most standard Kriging / Gaussian process regression features
(like in 'DiceKriging', 'kergp' or 'RobustGaSP' packages).
'libKriging' relies on Armadillo linear algebra library (Apache 2 license) by Conrad Sanderson,
and 'lbfgsb_cpp' is a 'C++' wrapper by Colin Fang around 'lbfgsb' library (BSD-3 license) by
Ciyou Zhu, Richard Byrd, Jorge Nocedal and Jose Luis Morales used for hyperparameters optimization.
Author: Pascal Have [aut],
Yann Richet [aut, cre] ,
Yves Deville [aut],
Conrad Sanderson [ctb],
Colin Fang [ctb],
Ciyou Zhu [ctb],
Richard Byrd [ctb],
Jorge Nocedal [ctb],
Jose Luis Morales [ctb]
Maintainer: Yann Richet <yann.richet@irsn.fr>
Diff between rlibkriging versions 0.7-4 dated 2023-01-14 and 0.7-4.1 dated 2023-01-17
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Title: Format R Code Automatically
Description: Provides a function tidy_source() to format R source code. Spaces
and indent will be added to the code automatically, and comments will be
preserved under certain conditions, so that R code will be more
human-readable and tidy. There is also a Shiny app as a user interface in
this package (see tidy_app()).
Author: Yihui Xie [aut, cre] ,
Ed Lee [ctb],
Eugene Ha [ctb],
Kohske Takahashi [ctb],
Pavel Krivitsky [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between formatR versions 1.13 dated 2022-12-22 and 1.14 dated 2023-01-17
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/utils.R | 2 ++ inst/doc/formatR.html | 22 ++++++++++------------ 4 files changed, 18 insertions(+), 18 deletions(-)
Title: Fitting Deep Distributional Regression
Description: Allows for the specification of semi-structured deep distributional regression models which are fitted in a neural network as
proposed by Ruegamer et al. (2023) <doi:10.18637/jss.v105.i02>.
Predictors can be modeled using structured (penalized) linear effects, structured non-linear effects or using an unstructured deep network model.
Author: David Ruegamer [aut, cre],
Florian Pfisterer [ctb],
Philipp Baumann [ctb],
Chris Kolb [ctb],
Lucas Kook [ctb]
Maintainer: David Ruegamer <david.ruegamer@gmail.com>
Diff between deepregression versions 0.3.1 dated 2022-11-24 and 1.0.0 dated 2023-01-17
DESCRIPTION | 8 - MD5 | 38 ++--- R/controls.R | 11 + R/deep-ensembles.R | 22 +-- R/deepregression.R | 4 R/orthogonalization.R | 15 +- R/rstudio |only build |only inst/CITATION |only inst/python/layers/__init__.py | 1 inst/python/layers/__pycache__/__init__.cpython-310.pyc |binary inst/python/layers/__pycache__/convlasso.cpython-310.pyc |binary inst/python/layers/__pycache__/orthogonalization.cpython-310.pyc |only inst/python/layers/convlasso.py | 5 inst/python/layers/orthogonalization.py |only man/deepregression.Rd | 4 man/ensemble.deepregression.Rd | 3 man/orthog_control.Rd | 6 man/reinit_weights.Rd | 4 man/reinit_weights.deepregression.Rd | 4 tests/testthat/test_controls.R | 2 tests/testthat/test_ensemble.R | 9 - tests/testthat/test_orthogonalization.R | 73 ++++++++++ 23 files changed, 163 insertions(+), 46 deletions(-)
More information about deepregression at CRAN
Permanent link
Title: A Wrapper of the JavaScript Library 'DataTables'
Description: Data objects in R can be rendered as HTML tables using the
JavaScript library 'DataTables' (typically via R Markdown or Shiny). The
'DataTables' library has been included in this R package. The package name
'DT' is an abbreviation of 'DataTables'.
Author: Yihui Xie [aut, cre],
Joe Cheng [aut],
Xianying Tan [aut],
JJ Allaire [ctb],
Maximilian Girlich [ctb],
Greg Freedman Ellis [ctb],
Johannes Rauh [ctb],
SpryMedia Limited [ctb, cph] ,
Brian Reavis [ctb, cph] ,
Leon Gersen [ctb, cph] ,
Bartek Szopka [ct [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between DT versions 0.26 dated 2022-10-18 and 0.27 dated 2023-01-17
DESCRIPTION | 10 +-- MD5 | 18 +++--- R/shiny.R | 14 +++- R/utils.R | 3 - build/vignette.rds |binary inst/doc/DT.html | 74 ++++++++++++++------------ inst/htmlwidgets/css/datatables-crosstalk.css | 9 +++ inst/htmlwidgets/datatables.js | 2 man/dataTableOutput.Rd | 7 +- tests/testit/test-search.R | 10 +++ 10 files changed, 89 insertions(+), 58 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] ,
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Atsushi Yasumoto [ctb] ,
Aust Frederik [ctb] ,
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Christophe Dervieux [ctb],
Clift [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.31 dated 2022-12-13 and 0.32 dated 2023-01-17
bookdown-0.31/bookdown/man/kindlegen.Rd |only bookdown-0.32/bookdown/DESCRIPTION | 8 +-- bookdown-0.32/bookdown/MD5 | 9 +--- bookdown-0.32/bookdown/NAMESPACE | 1 bookdown-0.32/bookdown/R/ebook.R | 21 ---------- bookdown-0.32/bookdown/inst/rmarkdown/lua/custom-environment.lua | 4 - 6 files changed, 10 insertions(+), 33 deletions(-)
Title: Parsing and Evaluation Tools that Provide More Details than the
Default
Description: Parsing and evaluation tools that make it easy to recreate the
command line behaviour of R.
Author: Hadley Wickham [aut],
Yihui Xie [aut, cre] ,
Michael Lawrence [ctb],
Thomas Kluyver [ctb],
Jeroen Ooms [ctb],
Barret Schloerke [ctb],
Adam Ryczkowski [ctb],
Hiroaki Yutani [ctb],
Michel Lang [ctb],
Karolis Koncevičius [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between evaluate versions 0.19 dated 2022-12-13 and 0.20 dated 2023-01-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/eval.r | 8 +++++--- man/evaluate.Rd | 4 +++- 5 files changed, 21 insertions(+), 12 deletions(-)
Title: EMF Graphics Output Device
Description: Output graphics to EMF+/EMF.
Author: Philip Johnson
Maintainer: Philip Johnson <plfj@umd.edu>
Diff between devEMF versions 4.1-2 dated 2022-12-20 and 4.2 dated 2023-01-17
DESCRIPTION | 12 MD5 | 14 NEWS | 18 configure | 2072 +++++++++++++++++++++++++----------------------------- configure.ac | 8 src/devEMF.cpp | 32 src/emf.h | 19 src/fontmetrics.h | 259 ++---- 8 files changed, 1142 insertions(+), 1292 deletions(-)
Title: Regression with Functional Data
Description: Methods for regression for functional
data, including function-on-scalar, scalar-on-function, and
function-on-function regression. Some of the functions are applicable to
image data.
Author: Jeff Goldsmith [aut],
Fabian Scheipl [aut],
Lei Huang [aut],
Julia Wrobel [aut, cre],
Chongzhi Di [aut],
Jonathan Gellar [aut],
Jaroslaw Harezlak [aut],
Mathew W. McLean [aut],
Bruce Swihart [aut],
Luo Xiao [aut],
Ciprian Crainiceanu [aut],
Philip T. [...truncated...]
Maintainer: Julia Wrobel <julia.wrobel@cuanschutz.edu>
Diff between refund versions 0.1-28 dated 2022-10-06 and 0.1-29 dated 2023-01-17
DESCRIPTION | 10 ++--- MD5 | 24 +++++++------- R/fosr2s.R | 27 +-------------- R/pffr-ff.R | 2 - R/pffr.R | 2 - R/pwcv.R | 35 -------------------- man/af_old.Rd | 4 +- man/ff.Rd | 6 +-- man/fosr2s.Rd | 25 -------------- man/pffr.Rd | 2 - man/pwcv.Rd | 36 --------------------- tests/testthat/test-fosr.R | 77 ++++++++++++++++++++++----------------------- tests/testthat/test-pffr.R | 18 +++++----- 13 files changed, 77 insertions(+), 191 deletions(-)
Title: Proteomics Data Analysis and Modeling Tools
Description: A comprehensive, user-friendly package for label-free proteomics data analysis and machine learning-based modeling. Data generated from 'MaxQuant' can be easily used to conduct differential expression analysis, build predictive models with top protein candidates, and assess model performance. promor includes a suite of tools for quality control, visualization, missing data imputation (Lazar et. al. (2016) <doi:10.1021/acs.jproteome.5b00981>), differential expression analysis (Ritchie et. al. (2015) <doi:10.1093/nar/gkv007>), and machine learning-based modeling (Kuhn (2008) <doi:10.18637/jss.v028.i05>).
Author: Chathurani Ranathunge [aut, cre, cph]
Maintainer: Chathurani Ranathunge <caranathunge86@gmail.com>
Diff between promor versions 0.1.1 dated 2022-11-01 and 0.2.0 dated 2023-01-17
DESCRIPTION | 12 MD5 | 50 - NAMESPACE | 105 +- NEWS.md | 59 + R/createDF.R | 583 ++++++++------- R/findDE.R | 1199 +++++++++++++++---------------- R/handleNA.R | 1240 ++++++++++++++++---------------- R/modelProteins.R | 1263 ++++++++++++++++----------------- R/normalize.R | 508 ++++++------- README.md | 396 +++++----- build/vignette.rds |binary inst/CITATION | 22 inst/doc/intro_to_promor.R | 114 +- inst/doc/intro_to_promor.Rmd | 359 ++++----- inst/doc/intro_to_promor.html | 1011 +++++++++++++------------- man/create_df.Rd | 236 +++--- man/find_dep.Rd | 4 man/heatmap_de.Rd | 8 man/heatmap_na.Rd | 250 +++--- man/impute_na.Rd | 29 man/impute_plot.Rd | 16 man/norm_plot.Rd | 6 man/normalize_data.Rd | 15 man/train_models.Rd | 214 ++--- tests/testthat/test-protein_analysis.R | 924 ++++++++++++------------ vignettes/intro_to_promor.Rmd | 359 ++++----- 26 files changed, 4582 insertions(+), 4400 deletions(-)
Title: Visualize 'Confounder' Control in Meta-Analyses
Description: Visualize 'confounder' control in meta-analysis.
'metaconfoundr' is an approach to evaluating bias in studies used in
meta-analyses based on the causal inference framework. Study groups
create a causal diagram displaying their assumptions about the
scientific question. From this, they develop a list of important
'confounders'. Then, they evaluate whether studies controlled for
these variables well. 'metaconfoundr' is a toolkit to facilitate this
process and visualize the results as heat maps, traffic light plots,
and more.
Author: Malcolm Barrett [aut, cre] ,
Julie M. Petersen [aut] ,
Ludovic Trinquart [aut]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between metaconfoundr versions 0.1.1 dated 2022-08-06 and 0.1.2 dated 2023-01-17
DESCRIPTION | 8 MD5 | 36 NEWS.md | 5 R/metaconfoundr.R | 1 R/plots.R | 23 README.md | 1 build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/intro-to-metaconfoundr.html | 59 man/figures/README-unnamed-chunk-4-1.png |binary tests/testthat/_snaps/non-confounders/non-confounder-count-bar.svg | 22 tests/testthat/_snaps/plots/basic-heatmap.svg | 642 +++---- tests/testthat/_snaps/plots/cochrane-heatmap.svg | 834 +++++----- tests/testthat/_snaps/plots/cochrane-traffic-light-plot.svg | 384 ++-- tests/testthat/_snaps/plots/heatmap-with-robins-labels-cochrane-colors.svg | 642 +++---- tests/testthat/_snaps/plots/heatmap-with-robins-labels.svg | 642 +++---- tests/testthat/_snaps/plots/sorted-heatmap-by-domain.svg | 642 +++---- tests/testthat/_snaps/plots/sorted-heatmap.svg | 642 +++---- tests/testthat/_snaps/plots/themed-heatmap.svg | 642 +++---- 19 files changed, 2624 insertions(+), 2603 deletions(-)
Title: Analysis of Music and Speech
Description: Analyze music and speech, extract features like MFCCs, handle wave files and their representation in various ways, read mp3, read midi, perform steps of a transcription, ...
Also contains functions ported from the 'rastamat' 'Matlab' package.
Author: Uwe Ligges [aut, cre, cph] ,
Sebastian Krey [aut, cph],
Olaf Mersmann [aut, cph],
Sarah Schnackenberg [aut, cph],
Guillaume Guenard [aut, cph] ,
Daniel P. W. Ellis [aut, cph] ,
Underbit Technologies [aut, cph] ,
Andrea Preusser [ctb],
Anita Thieler [ [...truncated...]
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>
Diff between tuneR versions 1.4.1 dated 2022-10-20 and 1.4.2 dated 2023-01-17
DESCRIPTION | 8 - MD5 | 10 +- R/readWave.R | 1 inst/CITATION | 4 src/timer.c | 284 +++++++++++++++++++++++++++++----------------------------- src/timer.h | 4 6 files changed, 157 insertions(+), 154 deletions(-)
Title: Life History Metrics from Matrix Population Models
Description: Functions for calculating life history metrics using matrix
population models ('MPMs'). Described in Jones et al. (2021)
<doi:10.1101/2021.04.26.441330>.
Author: Patrick Barks [aut] ,
Danny Buss [ctb],
Pol Capdevila [aut] ,
Hal Caswell [aut] ,
Judy P. Che-Castaldo [aut] ,
John Jackson [aut] ,
Tamora James [aut] ,
Owen Jones [aut, cre] ,
Sam Levin [aut] ,
William K. Petry [aut] ,
Roberto Salguero-Gomez [aut] , [...truncated...]
Maintainer: Owen Jones <jones@biology.sdu.dk>
Diff between Rage versions 1.2.0 dated 2021-10-15 and 1.3.0 dated 2023-01-17
DESCRIPTION | 105 - MD5 | 198 +-- NEWS.md | 6 R/data.R | 4 R/entropy_d.R | 38 R/entropy_k.R | 40 R/gen_time.R | 114 + R/life_expect.R | 114 - R/lifetable_convert.R | 30 R/longevity.R | 44 R/mature_.R | 64 - R/mpm_collapse.R | 92 - R/mpm_to_.R | 84 - R/mpm_to_table.R | 18 R/name_stages.R | 26 R/net_repro_rate.R | 51 R/perturb_matrix.R | 67 - R/perturb_stochastic.R | 75 - R/perturb_trans.R | 126 +- R/perturb_vr.R | 166 +- R/plot_life_cycle.R | 90 - R/pop_vectors.R | 34 R/qsd_converge.R | 93 - R/repro_stages.R | 40 R/shape_surv.R | 48 R/standard_stages.R | 86 - R/utils.R | 103 - R/vital_rates.R | 169 +- R/vr.R | 167 +- R/vr_mat.R | 68 - R/vr_vec.R | 202 +-- build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/a01_GettingStarted.html | 1884 +++++++++++++++++++++++++++--- inst/doc/a02_VitalRates.html | 476 ++++++- inst/doc/a03_LifeHistoryTraits.Rmd | 9 inst/doc/a03_LifeHistoryTraits.html | 532 ++++++-- inst/doc/a04_AgeFromStage.Rmd | 2 inst/doc/a04_AgeFromStage.html | 425 +++++- inst/doc/a05_SuggestedQualityControl.html | 416 +++++- man/age_from_stage.Rd | 6 man/entropy_k.Rd | 8 man/gen_time.Rd | 52 man/life_expect.Rd | 4 man/longevity.Rd | 4 man/mpm_collapse.Rd | 28 man/mpm_to_table.Rd | 6 man/name_stages.Rd | 9 man/net_repro_rate.Rd | 6 man/perturb_matrix.Rd | 26 man/perturb_stochastic.Rd | 6 man/perturb_trans.Rd | 36 man/perturb_vr.Rd | 32 man/plot_life_cycle.Rd | 14 man/qsd_converge.Rd | 4 man/repro_stages.Rd | 20 man/shape_surv.Rd | 24 man/standard_stages.Rd | 40 man/vital_rates.Rd | 44 man/vr.Rd | 40 man/vr_mat.Rd | 20 man/vr_vec.Rd | 48 tests/spelling.R | 9 tests/testthat/helper-matrices.R | 190 +-- tests/testthat/test-checkValidMat.R | 28 tests/testthat/test-checkValidStartLife.R | 11 tests/testthat/test-entropy_d.R | 10 tests/testthat/test-entropy_k.R | 8 tests/testthat/test-gen_time.R | 26 tests/testthat/test-life_expect.R | 6 tests/testthat/test-lifetable_convert.R | 7 tests/testthat/test-longevity.R | 2 tests/testthat/test-mature_.R | 43 tests/testthat/test-mature_distrib.R | 20 tests/testthat/test-meanMat.R | 17 tests/testthat/test-mpm_collapse.R | 17 tests/testthat/test-mpm_rearrange.R | 41 tests/testthat/test-mpm_split.R | 7 tests/testthat/test-mpm_standardize.R | 20 tests/testthat/test-mpm_to_.R | 33 tests/testthat/test-mpm_to_table.R | 14 tests/testthat/test-name_stages.R | 24 tests/testthat/test-net_repro_rate.R | 2 tests/testthat/test-perturb_matrix.R | 14 tests/testthat/test-perturb_stochastic.R | 28 tests/testthat/test-perturb_trans.R | 13 tests/testthat/test-perturb_vr.R | 13 tests/testthat/test-plot_life_cycle.R | 15 tests/testthat/test-pop_vectors.R | 24 tests/testthat/test-qsd_converge.R | 34 tests/testthat/test-repro_stages.R | 12 tests/testthat/test-shape_rep.R | 29 tests/testthat/test-shape_surv.R | 39 tests/testthat/test-standard_stages.R | 46 tests/testthat/test-vital_rates.R | 86 - tests/testthat/test-vr.R | 65 - tests/testthat/test-vr_mat.R | 43 tests/testthat/test-vr_vec.R | 73 - vignettes/a03_LifeHistoryTraits.Rmd | 9 vignettes/a04_AgeFromStage.Rmd | 2 100 files changed, 5491 insertions(+), 2375 deletions(-)
Title: Format Output of Various Routines in a Suitable Way for Reports
and Publication
Description: A bunch of convenience functions that transform the results of some basic statistical analyses
into table format nearly ready for publication. This includes descriptive tables, tables of
logistic regression and Cox regression results as well as forest plots.
Author: Thomas A. Gerds [aut, cre],
Christian Torp-Pedersen [ctb],
Klaus K Holst [ctb],
Brice Ozenne [aut]
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>
Diff between Publish versions 2020.12.23 dated 2021-01-05 and 2023.01.17 dated 2023-01-17
DESCRIPTION | 8 ++++---- MD5 | 40 ++++++++++++++++++++-------------------- NAMESPACE | 3 +++ R/getFrequency.R | 9 +++++---- R/glmSeries.R | 2 +- R/plotConfidence.R | 4 ++-- R/publish-package.R | 2 -- R/publish.matrix.R | 11 +++++++---- R/regressionTable.R | 4 ++-- R/subgroupAnalysis.R | 22 ++++++++++------------ R/summary.univariateTable.R | 20 ++++++++++++++++---- R/table2x2.R | 20 ++++++++++++-------- R/univariateTable.R | 12 ++++++------ man/Diabetes.Rd | 3 --- man/publish.glm.Rd | 4 ++-- man/publish.matrix.Rd | 3 ++- man/subgroupAnalysis.Rd | 13 +++++++++++-- man/summary.univariateTable.Rd | 1 + man/table2x2.Rd | 3 +++ man/univariateTable.Rd | 10 +++++----- tests/test-univariateTable.R | 8 ++++++-- 21 files changed, 118 insertions(+), 84 deletions(-)
Title: Tools for Computing on the Language
Description: Useful tools to pry back the covers of R and understand the
language at a deeper level.
Author: Hadley Wickham [aut, cre],
R Core team [ctb]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between pryr versions 0.1.5 dated 2021-07-26 and 0.1.6 dated 2023-01-17
DESCRIPTION | 23 ++++++++++++----------- MD5 | 6 +++--- README.md | 3 +++ src/bytes.cpp | 4 ++-- 4 files changed, 20 insertions(+), 16 deletions(-)
More information about processpredictR at CRAN
Permanent link
Title: Analyze and Visualize Data from 'Microsoft Viva Insights'
Description: Provides a versatile range of functions, including exploratory data analysis, time-series analysis, and data validation, whilst at the same time implements a set of best practices in analyzing and visualizing data specific to 'Microsoft Viva Insights'.
Author: Martin Chan [aut, cre],
Carlos Morales [aut]
Maintainer: Martin Chan <martin.chan@microsoft.com>
Diff between vivainsights versions 0.1.0 dated 2022-10-04 and 0.2.0 dated 2023-01-17
DESCRIPTION | 11 - MD5 | 96 +++++++--- NAMESPACE | 26 ++ NEWS.md | 12 - R/check_query.R |only R/flag_ch_ratio.R |only R/flag_em_ratio.R |only R/flag_extreme.R |only R/flag_outlooktime.R |only R/generate_report.R |only R/generate_report2.R |only R/globals.R | 40 ++++ R/heat_colours.R | 4 R/identify_churn.R |only R/identify_datefreq.R |only R/identify_holidayweeks.R |only R/identify_inactiveweeks.R |only R/identify_nkw.R |only R/identify_outlier.R |only R/identify_privacythreshold.R |only R/identify_shifts.R |only R/identify_tenure.R |only R/standardise.R |only R/supporting_functions.R | 2 R/track_hr_change.R |only R/validation_report.R |only man/anonymise.Rd | 86 ++++----- man/camel_clean.Rd | 1 man/check_inputs.Rd | 3 man/check_query.Rd |only man/create_rank_combine.Rd | 100 +++++----- man/cut_hour.Rd | 1 man/extract_date_range.Rd | 1 man/extract_hr.Rd | 18 + man/flag_ch_ratio.Rd |only man/flag_em_ratio.Rd |only man/flag_extreme.Rd |only man/flag_outlooktime.Rd |only man/generate_report.Rd |only man/generate_report2.Rd |only man/heat_colours.Rd | 1 man/hr_trend.Rd | 17 + man/hrvar_count.Rd | 17 + man/hrvar_count_all.Rd | 17 + man/hrvar_trend.Rd | 17 + man/identify_churn.Rd |only man/identify_datefreq.Rd |only man/identify_holidayweeks.Rd |only man/identify_inactiveweeks.Rd |only man/identify_nkw.Rd |only man/identify_outlier.Rd |only man/identify_privacythreshold.Rd |only man/identify_shifts.Rd |only man/identify_tenure.Rd |only man/is_date_format.Rd | 1 man/jitter_metrics.Rd | 80 ++++---- man/maxmin.Rd | 1 man/pq_data.Rd | 360 +++++++++++++++++++-------------------- man/read_preamble.Rd |only man/rgb2hex.Rd | 1 man/totals_bind.Rd | 1 man/totals_col.Rd | 1 man/track_HR_change.Rd |only man/tstamp.Rd | 1 man/us_to_space.Rd | 1 man/validation_report.Rd |only man/wrap.Rd | 1 man/wrap_text.Rd | 60 +++--- 68 files changed, 588 insertions(+), 390 deletions(-)
Title: Spatial Resampling Infrastructure
Description: Functions and classes for spatial resampling to use with the
'rsample' package, such as spatial cross-validation (Brenning, 2012)
<doi:10.1109/IGARSS.2012.6352393>. The scope of 'rsample' and
'spatialsample' is to provide the basic building blocks for creating
and analyzing resamples of a spatial data set, but neither package
includes functions for modeling or computing statistics. The resampled
spatial data sets created by 'spatialsample' do not contain much
overhead in memory.
Author: Julia Silge [aut] ,
Michael Mahoney [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between spatialsample versions 0.2.1 dated 2022-08-05 and 0.3.0 dated 2023-01-17
spatialsample-0.2.1/spatialsample/tests/testthat/_snaps/autoplot.md |only spatialsample-0.3.0/spatialsample/DESCRIPTION | 12 spatialsample-0.3.0/spatialsample/MD5 | 74 spatialsample-0.3.0/spatialsample/NEWS.md | 30 spatialsample-0.3.0/spatialsample/R/autoplot.R | 31 spatialsample-0.3.0/spatialsample/R/buffer.R | 10 spatialsample-0.3.0/spatialsample/R/data.R | 4 spatialsample-0.3.0/spatialsample/R/spatial_block_cv.R | 78 spatialsample-0.3.0/spatialsample/R/spatial_clustering_cv.R | 167 spatialsample-0.3.0/spatialsample/R/spatial_vfold_cv.R | 32 spatialsample-0.3.0/spatialsample/README.md | 52 spatialsample-0.3.0/spatialsample/build/partial.rdb |binary spatialsample-0.3.0/spatialsample/build/vignette.rds |binary spatialsample-0.3.0/spatialsample/inst/doc/spatialsample.html | 162 spatialsample-0.3.0/spatialsample/man/boston_canopy.Rd | 4 spatialsample-0.3.0/spatialsample/man/figures/README-2022-06-12_boston-anim-.gif |binary spatialsample-0.3.0/spatialsample/man/figures/README-2022-06-12_boston_static-1.png |binary spatialsample-0.3.0/spatialsample/man/spatial_block_cv.Rd | 5 spatialsample-0.3.0/spatialsample/man/spatial_clustering_cv.Rd | 41 spatialsample-0.3.0/spatialsample/man/spatial_vfold.Rd | 3 spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/autoplot/block-plots-with-grid.svg | 128 spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/autoplot/buffered-llo-set-plot.svg | 6132 +++++----- spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/autoplot/buffered-rsample-plot.svg | 1490 +- spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/autoplot/buffered-rset-plot.svg | 1646 +- spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/autoplot/buffered-vfold-plot.svg | 1504 +- spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/autoplot/buffered-vfold-split.svg | 1490 +- spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/autoplot/repeated-block-cv.svg |only spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/autoplot/repeated-llo.svg |only spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/autoplot/repeated-vfold.svg |only spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/autoplot/snake-flips-rows-the-right-way.svg | 1984 +-- spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/buffer.md | 26 spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/spatial_block_cv.md | 15 spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/spatial_clustering_cv.md | 22 spatialsample-0.3.0/spatialsample/tests/testthat/_snaps/spatial_vfold_cv.md | 64 spatialsample-0.3.0/spatialsample/tests/testthat/test-autoplot.R | 41 spatialsample-0.3.0/spatialsample/tests/testthat/test-buffer.R | 1 spatialsample-0.3.0/spatialsample/tests/testthat/test-misc.R | 39 spatialsample-0.3.0/spatialsample/tests/testthat/test-spatial_block_cv.R | 32 spatialsample-0.3.0/spatialsample/tests/testthat/test-spatial_clustering_cv.R | 97 spatialsample-0.3.0/spatialsample/tests/testthat/test-spatial_vfold_cv.R | 80 40 files changed, 7886 insertions(+), 7610 deletions(-)
More information about SLPresElection at CRAN
Permanent link
Title: Genealogical Data Analysis
Description: Genealogical data analysis including descriptive statistics (e.g., kinship and inbreeding coefficients) and gene-dropping simulations. See: "GENLIB: an R package for the analysis of genealogical data" Gauvin et al. (2015) <doi:10.1186/s12859-015-0581-5>.
Author: Louis Houde [aut],
Jean-Francois Lefebvre [aut],
Valery Roy-Lagace [aut],
Sebastien Lemieux [aut],
Michael J. Fromberger [ctb],
Jarno van der Kolk [ctb],
Mohan Rakesh [ctb],
Marie-Helene Roy-Gagnon [cre]
Maintainer: Marie-Helene Roy-Gagnon <mroygagn@uottawa.ca>
Diff between GENLIB versions 1.1.8 dated 2022-12-13 and 1.1.9 dated 2023-01-17
DESCRIPTION | 8 - MD5 | 13 - NAMESPACE | 2 R/fonctionsSimul.R | 5 man/gen.simuHaplo_convert.Rd |only src/fondateur.cpp | 324 +++++++++++++++++++++---------------------- src/fondateur.h | 8 - src/interface.cpp | 6 8 files changed, 189 insertions(+), 177 deletions(-)
Title: Standardize Dates in Different Formats or with Missing Data
Description: There are many different formats dates are commonly
represented with: the order of day, month, or year can differ,
different separators ("-", "/", or whitespace) can be used, months can
be numerical, names, or abbreviations and year given as two digits or
four. 'datefixR' takes dates in all these different formats and
converts them to R's built-in date class. If 'datefixR' cannot
standardize a date, such as because it is too malformed, then the user
is told which date cannot be standardized and the corresponding ID for
the row. 'datefixR' also allows the imputation of missing days and
months with user-controlled behavior.
Author: Nathan Constantine-Cooke [aut, cre]
,
Jonathan Kitt [ctb, trl],
Antonio J. Perez-Luque [ctb, trl]
,
Daniel Possenriede [ctb, trl] ,
Kaique dos S. Alves [rev] ,
Al-Ahmadgaid B. Asaad [rev]
Maintainer: Nathan Constantine-Cooke <nathan.constantine-cooke@ed.ac.uk>
Diff between datefixR versions 1.3.1 dated 2022-10-24 and 1.4.0 dated 2023-01-17
datefixR-1.3.1/datefixR/tests/testthat/_snaps/fix_date.md |only datefixR-1.3.1/datefixR/tests/testthat/_snaps/fix_dates.md |only datefixR-1.3.1/datefixR/tests/testthat/apps |only datefixR-1.4.0/datefixR/DESCRIPTION | 13 - datefixR-1.4.0/datefixR/MD5 | 87 +++++----- datefixR-1.4.0/datefixR/NEWS.md | 20 ++ datefixR-1.4.0/datefixR/R/fix_date_char.R | 4 datefixR-1.4.0/datefixR/R/fix_date_df.R | 11 + datefixR-1.4.0/datefixR/R/internal.R | 25 ++ datefixR-1.4.0/datefixR/README.md | 11 - datefixR-1.4.0/datefixR/build/vignette.rds |binary datefixR-1.4.0/datefixR/inst/doc/datefixR.R | 8 datefixR-1.4.0/datefixR/inst/doc/datefixR.Rmd | 24 ++ datefixR-1.4.0/datefixR/inst/doc/datefixR.html | 57 ++++-- datefixR-1.4.0/datefixR/inst/po/de/LC_MESSAGES/R-datefixR.mo |binary datefixR-1.4.0/datefixR/inst/po/de/LC_MESSAGES/datefixR.mo |only datefixR-1.4.0/datefixR/inst/po/en@quot/LC_MESSAGES/R-datefixR.mo |binary datefixR-1.4.0/datefixR/inst/po/en@quot/LC_MESSAGES/datefixR.mo |only datefixR-1.4.0/datefixR/inst/po/es/LC_MESSAGES/R-datefixR.mo |binary datefixR-1.4.0/datefixR/inst/po/es/LC_MESSAGES/datefixR.mo |only datefixR-1.4.0/datefixR/inst/po/fr/LC_MESSAGES/R-datefixR.mo |binary datefixR-1.4.0/datefixR/inst/po/fr/LC_MESSAGES/datefixR.mo |only datefixR-1.4.0/datefixR/man/fix_date_char.Rd | 14 + datefixR-1.4.0/datefixR/man/fix_date_df.Rd | 9 - datefixR-1.4.0/datefixR/po/R-datefixR.pot | 23 +- datefixR-1.4.0/datefixR/po/R-de.po | 23 +- datefixR-1.4.0/datefixR/po/R-es.po | 23 +- datefixR-1.4.0/datefixR/po/R-fr.po | 23 +- datefixR-1.4.0/datefixR/po/R-pt.po | 21 +- datefixR-1.4.0/datefixR/po/datefixR.pot |only datefixR-1.4.0/datefixR/po/de.po |only datefixR-1.4.0/datefixR/po/es.po |only datefixR-1.4.0/datefixR/po/fr.po |only datefixR-1.4.0/datefixR/src/code.cpp | 9 - datefixR-1.4.0/datefixR/src/translate.h |only datefixR-1.4.0/datefixR/tests/testthat/_snaps/mac-4.2 |only datefixR-1.4.0/datefixR/tests/testthat/_snaps/shiny |only datefixR-1.4.0/datefixR/tests/testthat/test_app_1.R | 53 +++++- datefixR-1.4.0/datefixR/tests/testthat/test_fix_date_char.R | 8 datefixR-1.4.0/datefixR/tests/testthat/test_fix_date_df.R | 24 ++ datefixR-1.4.0/datefixR/tests/testthat/test_languages.R | 12 + datefixR-1.4.0/datefixR/vignettes/datefixR.Rmd | 24 ++ 42 files changed, 379 insertions(+), 147 deletions(-)
Title: Conditional Graphical LASSO for Gaussian Graphical Models with
Censored and Missing Values
Description: Conditional graphical lasso estimator is an extension of the graphical lasso proposed to estimate the conditional dependence structure of a set of p response variables given q predictors. This package provides suitable extensions developed to study datasets with censored and/or missing values. Standard conditional graphical lasso is available as a special case. Furthermore, the package provides an integrated set of core routines for visualization, analysis, and simulation of datasets with censored and/or missing values drawn from a Gaussian graphical model. Details about the implemented models can be found in Augugliaro et al. (2023) <doi: 10.18637/jss.v105.i01>, Augugliaro et al. (2020b) <doi: 10.1007/s11222-020-09945-7>, Augugliaro et al. (2020a) <doi: 10.1093/biostatistics/kxy043>, Yin et al. (2001) <doi: 10.1214/11-AOAS494> and Stadler et al. (2012) <doi: 10.1007/s11222-010-9219-7>.
Author: Luigi Augugliaro [aut, cre] ,
Gianluca Sottile [aut] ,
Ernst C. Wit [aut] ,
Veronica Vinciotti [aut]
Maintainer: Luigi Augugliaro <luigi.augugliaro@unipa.it>
Diff between cglasso versions 2.0.5 dated 2022-05-27 and 2.0.6 dated 2023-01-17
ChangeLog | 8 ++++++++ DESCRIPTION | 10 +++++----- MD5 | 33 +++++++++++++++++---------------- R/to_graph_S3methods.R | 2 ++ build/partial.rdb |binary inst |only man/MKMEP.Rd | 4 ++++ man/MM.Rd | 4 ++++ man/cglasso-package.Rd | 46 +++++++++++++++++++++++++--------------------- man/cglasso.Rd | 4 ++++ man/datacggm.Rd | 4 ++++ man/event.Rd | 4 ++++ man/getMatrix.Rd | 4 ++++ man/is.datacggm.Rd | 4 ++++ man/plot.cglasso.Rd | 4 ++++ man/qqcnorm.Rd | 4 ++++ man/rcggm.Rd | 4 ++++ man/summary.datacggm.Rd | 4 ++++ 18 files changed, 101 insertions(+), 42 deletions(-)
Title: Classification with Mixture Modelling
Description: Interface of 'MIXMOD' software for supervised, unsupervised and
semi-supervised classification with mixture modelling <doi: 10.18637/jss.v067.i06>.
Author: Florent Langrognet [aut],
Remi Lebret [aut],
Christian Poli [aut],
Serge Iovleff [aut],
Benjamin Auder [aut],
Parmeet Bhatia [ctb],
Anwuli Echenim [ctb],
Serge Iovleff [aut],
Christophe Biernacki [ctb],
Gilles Celeux [ctb],
Gerard Govaert [ctb],
Quen [...truncated...]
Maintainer: Quentin Grimonprez <quentingrim@yahoo.fr>
Diff between Rmixmod versions 2.1.7 dated 2022-10-18 and 2.1.8 dated 2023-01-17
DESCRIPTION | 10 MD5 | 6 configure | 2475 ++++++++++++++++++++++++----------------------------------- configure.ac | 23 4 files changed, 1068 insertions(+), 1446 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Lightweight parallel code execution, local or distributed across
the network. Designed for simplicity, a 'mirai' evaluates an arbitrary
expression asynchronously, resolving automatically upon completion.
Built on 'nanonext' and 'NNG' (Nanomsg Next Gen), uses scalability protocols
not subject to R connection limits and transports faster than TCP/IP where
applicable.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai versions 0.7.1 dated 2022-11-15 and 0.7.2 dated 2023-01-17
DESCRIPTION | 16 ++++++++-------- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/mirai-package.R | 13 ++++++------- R/mirai.R | 10 +++++----- R/pipe.R | 4 ++-- README.md | 10 +++++----- inst/CITATION | 2 +- man/mirai-package.Rd | 6 +++--- 9 files changed, 42 insertions(+), 39 deletions(-)
Title: GSL Nonlinear Least-Squares Fitting
Description: An R interface to nonlinear least-squares optimization with the GNU Scientific Library (GSL), see M. Galassi et al. (2009, ISBN:0954612078). The available trust region methods include the Levenberg-Marquardt algorithm with and without geodesic acceleration, the Steihaug-Toint conjugate gradient algorithm for large systems and several variants of Powell's dogleg algorithm. Bindings are provided to tune a number of parameters affecting the low-level aspects of the trust region algorithms. The interface mimics R's nls() function and returns model objects inheriting from the same class.
Author: Joris Chau [aut, cre]
Maintainer: Joris Chau <joris.chau@openanalytics.eu>
Diff between gslnls versions 1.1.1 dated 2021-12-13 and 1.1.2 dated 2023-01-17
DESCRIPTION | 12 MD5 | 20 NEWS.md | 5 R/nls.R | 28 R/nls_large.R | 16 configure | 1781 ++++++++++++++++++++++++++++++++----------------- configure.ac | 10 man/gsl_nls.Rd | 10 man/gsl_nls_control.Rd | 10 man/gsl_nls_large.Rd | 8 src/nls.c | 4 11 files changed, 1243 insertions(+), 661 deletions(-)
Title: Log-Concave Density Estimation in Arbitrary Dimensions
Description: Software for computing a log-concave (maximum likelihood) estimator for i.i.d. data in any number of dimensions. For a detailed description of the method see Cule, Samworth and Stewart (2010, Journal of Royal Statistical Society Series B, <doi:10.1111/j.1467-9868.2010.00753.x>).
Author: Madeleine Cule, Robert Gramacy, Richard Samworth, Yining Chen
Maintainer: Yining Chen <Y.Chen101@lse.ac.uk>
Diff between LogConcDEAD versions 1.6-6 dated 2022-11-03 and 1.6-7 dated 2023-01-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 1 + inst/doc/LogConcDEAD.pdf |binary src/convhull.c | 2 +- src/convhullnmlc.c | 2 +- src/delaunayn.c | 2 +- src/global.c | 6 +++--- 8 files changed, 18 insertions(+), 17 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph],
Paul Buerkner [ctb],
Iago Gine-Vazquez [ctb],
Maxime Herve [ctb],
Maarten Jung [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Hannes Riebl [ctb],
Henrik Singmann [ctb]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.8.3 dated 2022-12-06 and 1.8.4-1 dated 2023-01-17
DESCRIPTION | 10 - MD5 | 112 +++++++++-------- NAMESPACE | 6 NEWS.md | 61 +++++++++ R/MCMC-support.R | 4 R/betareg.support.R | 3 R/cld-emm.R | 2 R/contrast.R | 6 R/countreg-support.R | 231 +++++++++++++++++-------------------- R/datasets.R | 2 R/emm-list.R | 40 ++---- R/emmGrid-methods.R | 4 R/emmeans.R | 41 ++++-- R/factors.R | 52 +++++++- R/glht-support.R | 2 R/interfacing.R | 37 +++++ R/ordinal-support.R | 3 R/ref-grid.R | 22 ++- R/test.R | 17 -- R/transformations.R | 14 +- R/zzz.R | 141 +++++++++++----------- build/vignette.rds |binary inst/doc/AQuickStart.R |only inst/doc/AQuickStart.Rmd |only inst/doc/AQuickStart.html |only inst/doc/FAQs.Rmd | 21 +++ inst/doc/FAQs.html | 27 +++- inst/doc/basics.Rmd | 10 - inst/doc/basics.html | 26 ++-- inst/doc/comparisons.html | 15 +- inst/doc/confidence-intervals.html | 16 +- inst/doc/interactions.html | 14 +- inst/doc/messy-data.html | 4 inst/doc/models.html | 4 inst/doc/predictions.html | 4 inst/doc/re-engineering-clds.html | 4 inst/doc/sophisticated.html | 17 +- inst/doc/transformations.Rmd | 2 inst/doc/transformations.html | 6 inst/doc/utilities.html | 4 inst/doc/vignette-topics.Rmd | 16 ++ inst/doc/vignette-topics.html | 31 ++++ inst/doc/xplanations.html | 4 inst/doc/xtending.html | 8 - man/CLD.emmGrid.Rd | 2 man/contrast.Rd | 2 man/emm_list-object.Rd | 22 +-- man/emmeans.Rd | 15 +- man/extending-emmeans.Rd | 51 ++++++++ man/joint_tests.Rd | 3 man/make.tran.Rd | 13 +- man/manip-factors.Rd | 34 ++++- man/mcmc-support.Rd | 4 man/pigs.Rd | 2 vignettes/AQuickStart.Rmd |only vignettes/FAQs.Rmd | 21 +++ vignettes/basics.Rmd | 10 - vignettes/transformations.Rmd | 2 vignettes/vignette-topics.Rmd | 16 ++ 59 files changed, 773 insertions(+), 467 deletions(-)
Title: R Interface to the 'UNU.RAN' Random Variate Generators
Description: Interface to the 'UNU.RAN' library for Universal Non-Uniform RANdom variate generators.
Thus it allows to build non-uniform random number generators from quite arbitrary
distributions. In particular, it provides an algorithm for fast numerical inversion
for distribution with given density function.
In addition, the package contains densities, distribution functions and quantiles
from a couple of distributions.
Author: Josef Leydold [aut, cre],
Wolfgang H"ormann [aut]
Maintainer: Josef Leydold <josef.leydold@wu.ac.at>
Diff between Runuran versions 0.37 dated 2022-10-18 and 0.38 dated 2023-01-17
DESCRIPTION | 8 MD5 | 682 +++++++-------- NEWS | 10 build/vignette.rds |binary configure | 27 configure.ac | 2 inst/doc/Runuran.pdf |binary inst/include/unuran.h | 3 man/Runuran-package.Rd | 4 src/Makevars.in | 2 src/config.h.in | 4 src/unuran-src/distr/cemp.c | 2 src/unuran-src/distr/cemp.h | 2 src/unuran-src/distr/condi.c | 2 src/unuran-src/distr/condi.h | 2 src/unuran-src/distr/cont.c | 2 src/unuran-src/distr/cont.h | 2 src/unuran-src/distr/corder.c | 2 src/unuran-src/distr/corder.h | 2 src/unuran-src/distr/cvec.c | 2 src/unuran-src/distr/cvec.h | 2 src/unuran-src/distr/cvemp.c | 2 src/unuran-src/distr/cvemp.h | 2 src/unuran-src/distr/cxtrans.c | 2 src/unuran-src/distr/cxtrans.h | 2 src/unuran-src/distr/deprecated_distr.h | 2 src/unuran-src/distr/discr.c | 2 src/unuran-src/distr/discr.h | 2 src/unuran-src/distr/distr.c | 2 src/unuran-src/distr/distr.h | 2 src/unuran-src/distr/distr_info.c | 2 src/unuran-src/distr/distr_source.h | 2 src/unuran-src/distr/distr_struct.h | 2 src/unuran-src/distr/matr.c | 2 src/unuran-src/distr/matr.h | 2 src/unuran-src/distributions/c_F.c | 2 src/unuran-src/distributions/c_beta.c | 2 src/unuran-src/distributions/c_beta_gen.c | 2 src/unuran-src/distributions/c_burr.c | 2 src/unuran-src/distributions/c_cauchy.c | 2 src/unuran-src/distributions/c_chi.c | 2 src/unuran-src/distributions/c_chi_gen.c | 2 src/unuran-src/distributions/c_chisquare.c | 2 src/unuran-src/distributions/c_exponential.c | 2 src/unuran-src/distributions/c_exponential_gen.c | 2 src/unuran-src/distributions/c_extremeI.c | 2 src/unuran-src/distributions/c_extremeII.c | 2 src/unuran-src/distributions/c_gamma.c | 2 src/unuran-src/distributions/c_gamma_gen.c | 2 src/unuran-src/distributions/c_ghyp.c | 2 src/unuran-src/distributions/c_gig.c | 2 src/unuran-src/distributions/c_gig2.c | 2 src/unuran-src/distributions/c_gig_gen.c | 2 src/unuran-src/distributions/c_hyperbolic.c | 2 src/unuran-src/distributions/c_ig.c | 2 src/unuran-src/distributions/c_laplace.c | 2 src/unuran-src/distributions/c_logistic.c | 2 src/unuran-src/distributions/c_lognormal.c | 2 src/unuran-src/distributions/c_lomax.c | 2 src/unuran-src/distributions/c_meixner.c | 2 src/unuran-src/distributions/c_normal.c | 2 src/unuran-src/distributions/c_normal_gen.c | 2 src/unuran-src/distributions/c_pareto.c | 2 src/unuran-src/distributions/c_powerexponential.c | 2 src/unuran-src/distributions/c_powerexponential_gen.c | 2 src/unuran-src/distributions/c_rayleigh.c | 2 src/unuran-src/distributions/c_slash.c | 2 src/unuran-src/distributions/c_slash_gen.c | 2 src/unuran-src/distributions/c_student.c | 2 src/unuran-src/distributions/c_student_gen.c | 2 src/unuran-src/distributions/c_triangular.c | 2 src/unuran-src/distributions/c_uniform.c | 2 src/unuran-src/distributions/c_vg.c | 2 src/unuran-src/distributions/c_weibull.c | 2 src/unuran-src/distributions/d_binomial.c | 2 src/unuran-src/distributions/d_binomial_gen.c | 2 src/unuran-src/distributions/d_geometric.c | 2 src/unuran-src/distributions/d_hypergeometric.c | 2 src/unuran-src/distributions/d_hypergeometric_gen.c | 2 src/unuran-src/distributions/d_logarithmic.c | 2 src/unuran-src/distributions/d_logarithmic_gen.c | 2 src/unuran-src/distributions/d_negativebinomial.c | 2 src/unuran-src/distributions/d_poisson.c | 2 src/unuran-src/distributions/d_poisson_gen.c | 2 src/unuran-src/distributions/d_zipf.c | 2 src/unuran-src/distributions/d_zipf_gen.c | 2 src/unuran-src/distributions/m_correlation.c | 2 src/unuran-src/distributions/unur_distributions.h | 2 src/unuran-src/distributions/unur_distributions_source.h | 2 src/unuran-src/distributions/unur_stddistr.h | 2 src/unuran-src/distributions/vc_copula.c | 2 src/unuran-src/distributions/vc_multicauchy.c | 2 src/unuran-src/distributions/vc_multiexponential.c | 2 src/unuran-src/distributions/vc_multinormal.c | 2 src/unuran-src/distributions/vc_multinormal_gen.c | 2 src/unuran-src/distributions/vc_multistudent.c | 2 src/unuran-src/methods/arou.c | 2 src/unuran-src/methods/arou.h | 2 src/unuran-src/methods/arou_struct.h | 2 src/unuran-src/methods/ars.c | 2 src/unuran-src/methods/ars.h | 2 src/unuran-src/methods/ars_struct.h | 2 src/unuran-src/methods/auto.c | 2 src/unuran-src/methods/auto.h | 2 src/unuran-src/methods/auto_struct.h | 2 src/unuran-src/methods/cext.c | 2 src/unuran-src/methods/cext.h | 2 src/unuran-src/methods/cext_struct.h | 2 src/unuran-src/methods/cstd.c | 2 src/unuran-src/methods/cstd.h | 2 src/unuran-src/methods/cstd_struct.h | 2 src/unuran-src/methods/dari.c | 2 src/unuran-src/methods/dari.h | 2 src/unuran-src/methods/dari_struct.h | 2 src/unuran-src/methods/dau.c | 2 src/unuran-src/methods/dau.h | 2 src/unuran-src/methods/dau_struct.h | 2 src/unuran-src/methods/deprecated_methods.h | 2 src/unuran-src/methods/deprecated_tdrgw.h | 2 src/unuran-src/methods/deprecated_vmt.h | 2 src/unuran-src/methods/deprecated_vmt_struct.h | 2 src/unuran-src/methods/dext.c | 2 src/unuran-src/methods/dext.h | 2 src/unuran-src/methods/dext_struct.h | 2 src/unuran-src/methods/dgt.c | 2 src/unuran-src/methods/dgt.h | 2 src/unuran-src/methods/dgt_struct.h | 2 src/unuran-src/methods/dsrou.c | 2 src/unuran-src/methods/dsrou.h | 2 src/unuran-src/methods/dsrou_struct.h | 2 src/unuran-src/methods/dss.c | 2 src/unuran-src/methods/dss.h | 2 src/unuran-src/methods/dss_struct.h | 2 src/unuran-src/methods/dstd.c | 2 src/unuran-src/methods/dstd.h | 2 src/unuran-src/methods/dstd_struct.h | 2 src/unuran-src/methods/empk.c | 2 src/unuran-src/methods/empk.h | 2 src/unuran-src/methods/empk_struct.h | 2 src/unuran-src/methods/empl.c | 2 src/unuran-src/methods/empl.h | 2 src/unuran-src/methods/empl_struct.h | 2 src/unuran-src/methods/gibbs.c | 2 src/unuran-src/methods/gibbs.h | 2 src/unuran-src/methods/gibbs_struct.h | 2 src/unuran-src/methods/hinv.c | 2 src/unuran-src/methods/hinv.h | 2 src/unuran-src/methods/hinv_struct.h | 2 src/unuran-src/methods/hist.c | 2 src/unuran-src/methods/hist.h | 2 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src/unuran-src/methods/mvtdr_debug.ch | 2 src/unuran-src/methods/mvtdr_info.ch | 2 src/unuran-src/methods/mvtdr_init.ch | 2 src/unuran-src/methods/mvtdr_newset.ch | 2 src/unuran-src/methods/mvtdr_sample.ch | 2 src/unuran-src/methods/mvtdr_struct.h | 2 src/unuran-src/methods/ninv.c | 2 src/unuran-src/methods/ninv.h | 2 src/unuran-src/methods/ninv_debug.ch | 2 src/unuran-src/methods/ninv_info.ch | 2 src/unuran-src/methods/ninv_init.ch | 2 src/unuran-src/methods/ninv_newset.ch | 2 src/unuran-src/methods/ninv_newton.ch | 2 src/unuran-src/methods/ninv_regula.ch | 2 src/unuran-src/methods/ninv_sample.ch | 2 src/unuran-src/methods/ninv_struct.h | 2 src/unuran-src/methods/norta.c | 2 src/unuran-src/methods/norta.h | 2 src/unuran-src/methods/norta_struct.h | 2 src/unuran-src/methods/nrou.c | 2 src/unuran-src/methods/nrou.h | 2 src/unuran-src/methods/nrou_struct.h | 2 src/unuran-src/methods/pinv.c | 4 src/unuran-src/methods/pinv.h | 3 src/unuran-src/methods/pinv_debug.ch | 4 src/unuran-src/methods/pinv_info.ch | 2 src/unuran-src/methods/pinv_init.ch | 3 src/unuran-src/methods/pinv_newset.ch | 16 src/unuran-src/methods/pinv_newton.ch | 53 + src/unuran-src/methods/pinv_prep.ch | 4 src/unuran-src/methods/pinv_sample.ch | 2 src/unuran-src/methods/pinv_struct.h | 4 src/unuran-src/methods/srou.c | 2 src/unuran-src/methods/srou.h | 2 src/unuran-src/methods/srou_struct.h | 2 src/unuran-src/methods/ssr.c | 2 src/unuran-src/methods/ssr.h | 2 src/unuran-src/methods/ssr_struct.h | 2 src/unuran-src/methods/tabl.c | 2 src/unuran-src/methods/tabl.h | 2 src/unuran-src/methods/tabl_debug.ch | 2 src/unuran-src/methods/tabl_info.ch | 2 src/unuran-src/methods/tabl_init.ch | 2 src/unuran-src/methods/tabl_newset.ch | 2 src/unuran-src/methods/tabl_sample.ch | 2 src/unuran-src/methods/tabl_struct.h | 2 src/unuran-src/methods/tdr.c | 4 src/unuran-src/methods/tdr.h | 2 src/unuran-src/methods/tdr_debug.ch | 2 src/unuran-src/methods/tdr_gw_debug.ch | 2 src/unuran-src/methods/tdr_gw_init.ch | 2 src/unuran-src/methods/tdr_gw_sample.ch | 2 src/unuran-src/methods/tdr_ia_sample.ch | 2 src/unuran-src/methods/tdr_info.ch | 2 src/unuran-src/methods/tdr_init.ch | 2 src/unuran-src/methods/tdr_newset.ch | 2 src/unuran-src/methods/tdr_ps_debug.ch | 2 src/unuran-src/methods/tdr_ps_init.ch | 2 src/unuran-src/methods/tdr_ps_sample.ch | 2 src/unuran-src/methods/tdr_sample.ch | 2 src/unuran-src/methods/tdr_struct.h | 2 src/unuran-src/methods/unif.c | 2 src/unuran-src/methods/unif.h | 2 src/unuran-src/methods/unif_struct.h | 2 src/unuran-src/methods/unur_methods.h | 2 src/unuran-src/methods/unur_methods_source.h | 2 src/unuran-src/methods/utdr.c | 2 src/unuran-src/methods/utdr.h | 2 src/unuran-src/methods/utdr_struct.h | 2 src/unuran-src/methods/vempk.c | 2 src/unuran-src/methods/vempk.h | 2 src/unuran-src/methods/vempk_struct.h | 2 src/unuran-src/methods/vnrou.c | 2 src/unuran-src/methods/vnrou.h | 2 src/unuran-src/methods/vnrou_struct.h | 2 src/unuran-src/methods/x_gen.c | 2 src/unuran-src/methods/x_gen.h | 2 src/unuran-src/methods/x_gen_source.h | 2 src/unuran-src/methods/x_gen_struct.h | 2 src/unuran-src/parser/functparser.c | 2 src/unuran-src/parser/functparser_debug.ch | 2 src/unuran-src/parser/functparser_deriv.ch | 2 src/unuran-src/parser/functparser_eval.ch | 2 src/unuran-src/parser/functparser_init.ch | 2 src/unuran-src/parser/functparser_parser.ch | 2 src/unuran-src/parser/functparser_scanner.ch | 2 src/unuran-src/parser/functparser_source.h | 2 src/unuran-src/parser/functparser_stringgen.ch | 2 src/unuran-src/parser/functparser_struct.h | 2 src/unuran-src/parser/functparser_symbols.h | 2 src/unuran-src/parser/parser.c | 2 src/unuran-src/parser/parser.h | 2 src/unuran-src/parser/parser_source.h | 2 src/unuran-src/parser/stringparser.c | 2 src/unuran-src/parser/stringparser_lists.ch | 8 src/unuran-src/specfunct/bessel_asympt.c | 2 src/unuran-src/specfunct/cgamma.c | 2 src/unuran-src/specfunct/hypot.c | 2 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src/unuran-src/utils/debug.c | 4 src/unuran-src/utils/debug.h | 2 src/unuran-src/utils/debug_source.h | 2 src/unuran-src/utils/eigensystem.c | 2 src/unuran-src/utils/error.c | 2 src/unuran-src/utils/error.h | 2 src/unuran-src/utils/error_source.h | 2 src/unuran-src/utils/fmax.c | 2 src/unuran-src/utils/fmax_source.h | 2 src/unuran-src/utils/hooke.c | 2 src/unuran-src/utils/hooke_source.h | 2 src/unuran-src/utils/lobatto.c | 2 src/unuran-src/utils/lobatto_source.h | 2 src/unuran-src/utils/lobatto_struct.h | 2 src/unuran-src/utils/matrix.c | 2 src/unuran-src/utils/matrix_source.h | 2 src/unuran-src/utils/mrou_rectangle.c | 2 src/unuran-src/utils/mrou_rectangle_source.h | 2 src/unuran-src/utils/mrou_rectangle_struct.h | 2 src/unuran-src/utils/slist.c | 2 src/unuran-src/utils/slist.h | 2 src/unuran-src/utils/slist_struct.h | 2 src/unuran-src/utils/stream.c | 2 src/unuran-src/utils/stream.h | 2 src/unuran-src/utils/stream_source.h | 2 src/unuran-src/utils/string.c | 8 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Title: Spatio-Temporal Generalised Linear Mixed Models for Areal Unit
Data
Description: Implements a class of univariate and multivariate spatio-temporal generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian, or Poisson, but for some models only the binomial and Poisson data likelihoods are available. The spatio-temporal autocorrelation is modelled by random effects, which are assigned conditional autoregressive (CAR) style prior distributions. A number of different random effects structures are available, including models similar to Rushworth et al. (2014) <doi:10.1016/j.sste.2014.05.001>. Full details are given in the vignette accompanying this package. The creation and development of this package was supported by the Engineering and Physical Sciences Research Council (EPSRC) grants EP/J017442/1 and EP/T004878/1 and the Medical Research Council (MRC) grant MR/L022184/1.
Author: Duncan Lee, Alastair Rushworth, Gary Napier and William Pettersson
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayesST versions 3.3 dated 2022-05-12 and 3.3.1 dated 2023-01-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/vignette.rds |binary inst/doc/CARBayesST.Rnw | 6 +++--- inst/doc/CARBayesST.pdf |binary man/CARBayesST-package.Rd | 4 ++-- src/CARBayesST.cpp | 43 ++++++++++++++++++++----------------------- vignettes/CARBayesST.Rnw | 6 +++--- 8 files changed, 39 insertions(+), 42 deletions(-)
Title: R Interface to Stan
Description: User-facing R functions are provided to parse, compile, test,
estimate, and analyze Stan models by accessing the header-only Stan library
provided by the 'StanHeaders' package. The Stan project develops a probabilistic
programming language that implements full Bayesian statistical inference
via Markov Chain Monte Carlo, rough Bayesian inference via 'variational'
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to quickly
and accurately evaluate gradients without burdening the user with the need to
derive the partial derivatives.
Author: Jiqiang Guo [aut],
Jonah Gabry [aut],
Ben Goodrich [cre, aut],
Sebastian Weber [aut],
Daniel Lee [ctb],
Krzysztof Sakrejda [ctb],
Modrak Martin [ctb],
Trustees of Columbia University [cph],
Oleg Sklyar [cph] ,
The R Core Team [cph] ,
Jens Oehlschlaeg [...truncated...]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstan versions 2.21.7 dated 2022-09-08 and 2.21.8 dated 2023-01-17
DESCRIPTION | 8 - MD5 | 17 +-- build/vignette.rds |binary inst/doc/SBC.html | 19 ++- inst/doc/external.html | 106 ++++++++++++++++++-- inst/doc/rstan.html | 214 ++++++++++++++++++++++-------------------- inst/doc/stanfit-objects.html | 175 +++++++++++++++++----------------- src/Makevars | 2 src/Makevars.win | 2 src/grammar_inst.cpp |only 10 files changed, 326 insertions(+), 217 deletions(-)
Title: Access to Spanish Meteorological Stations Services
Description: Access to different Spanish meteorological stations data services and APIs (AEMET, SMC, MG,
Meteoclimatic...).
Author: Victor Granda [aut, cre] ,
Miquel de Caceres [ctb] ,
Aitor Ameztegui [ctb] ,
Luis Franco [ctb]
Maintainer: Victor Granda <victorgrandagarcia@gmail.com>
Diff between meteospain versions 0.0.4 dated 2022-05-25 and 0.1.0 dated 2023-01-17
DESCRIPTION | 16 ++-- MD5 | 50 ++++++------ NEWS.md | 5 + R/aemet_helpers.R | 44 +++++------ R/get_data.R | 58 ++++++++------ R/meteocat_helpers.R | 22 ++--- R/meteoclimatic_helpers.R | 2 R/meteogalicia_helpers.R | 124 +++++++++++++++++-------------- R/ria_helpers.R | 30 +++---- R/services_options.R | 88 +++++++++++----------- R/utils.R | 4 - README.md | 89 +++++++++++----------- build/vignette.rds |binary inst/doc/aemet.html | 130 +++++++++++++++++---------------- inst/doc/api_limits.html | 124 ++++++++++++++++--------------- inst/doc/compatibility.html | 124 ++++++++++++++++--------------- inst/doc/meteocat.html | 126 ++++++++++++++++--------------- inst/doc/meteoclimatic.html | 124 ++++++++++++++++--------------- inst/doc/meteogalicia.html | 124 ++++++++++++++++--------------- inst/doc/ria.html | 124 ++++++++++++++++--------------- man/figures/README-plot_stations-1.png |binary man/figures/README-plot_stations-2.png |binary man/get_meteo_from.Rd | 24 +++--- man/get_quota_from.Rd | 14 ++- man/get_stations_info_from.Rd | 14 ++- man/services_options.Rd | 88 +++++++++++----------- 26 files changed, 821 insertions(+), 727 deletions(-)
Title: Extending the Range of Functions for Probability Distributions
Description: A consistent, unified and extensible
framework for estimation of parameters for probability distributions, including
parameter estimation procedures that allow for weighted samples; the current set of distributions included are: the standard beta, The four-parameter beta, Burr, gamma, Gumbel, Johnson SB and SU, Laplace, logistic, normal, symmetric truncated normal, truncated normal, symmetric-reflected truncated beta, standard symmetric-reflected truncated beta, triangular, uniform, and Weibull distributions; decision criteria and selections based on these decision criteria.
Author: Haizhen Wu <h.wu2@massey.ac.nz>,
A. Jonathan R. Godfrey <A.J.Godfrey@massey.ac.nz>,
Kondaswamy Govindaraju <k.govindaraju@massey.ac.nz>,
Sarah Pirikahu <s.pirikahu@massey.ac.nz>
Maintainer: Oleksii Nikolaienko <oleksii.nikolaienko@gmail.com>
Diff between ExtDist versions 0.6-4 dated 2020-12-07 and 0.7-1 dated 2023-01-17
DESCRIPTION | 8 MD5 | 127 ++--- NAMESPACE | 13 R/Beta.R | 10 R/Beta_ab.R | 474 ++++++++++----------- R/Burr.R | 2 R/DistSelCriteria.R | 98 ++-- R/Gamma.R | 427 +++++++++---------- R/Gumbel.R | 2 R/JohnsonSB.R | 510 +++++++++++----------- R/JohnsonSU.R | 438 +++++++++---------- R/Laplace.R | 6 R/Logistic.R | 374 ++++++++-------- R/Normal.R | 546 ++++++++++++------------ R/Normal_sym_trunc_ab.R | 276 ++++++------ R/Normal_trunc_ab.R | 354 +++++++-------- R/SRTB_ab.R | 340 +++++++-------- R/SSRTB.R | 346 +++++++-------- R/Triangular.R | 310 ++++++------- R/Uniform.R | 14 R/Weibull.R | 459 ++++++++++---------- R/bestDist.R | 118 ++--- R/compareDist.R | 140 +++--- R/eDist.R | 340 +++++++-------- R/eval.estimation.R | 2 R/wmle.R | 606 +++++++++++++-------------- README.md |only build/vignette.rds |binary inst/doc/Distributions-Beta.Rmd | 185 ++++---- inst/doc/Distributions-Beta.html | 557 +++++++----------------- inst/doc/Distributions-Normal.Rmd | 187 ++++---- inst/doc/Distributions-Normal.html | 557 +++++++----------------- inst/doc/Distributions.Rmd | 65 +- inst/doc/Distributions.html | 557 +++++++----------------- inst/doc/ParaEst-and-DistSel-by-ExtDist.Rmd | 249 +++++------ inst/doc/ParaEst-and-DistSel-by-ExtDist.pdf |binary man/Beta.Rd | 32 - man/Beta_ab.Rd | 308 +++++++------ man/Burr.Rd | 31 - man/DistSelCriteria.Rd | 87 ++- man/Exponential.Rd | 245 +++++----- man/ExtDist-package.Rd | 4 man/Gamma.Rd | 259 +++++------ man/Gumbel.Rd | 68 ++- man/JohnsonSB.Rd | 314 +++++++------ man/JohnsonSU.Rd | 313 +++++++------ man/Laplace.Rd | 264 +++++------ man/Logistic.Rd | 274 ++++++------ man/Normal.Rd | 272 ++++++------ man/Normal_sym_trunc_ab.Rd | 181 ++++---- man/Normal_trunc_ab.Rd | 266 ++++++----- man/SRTB_ab.Rd | 207 +++++---- man/SSRTB.Rd | 176 ++++--- man/Triangular.Rd | 183 ++++---- man/Uniform.Rd | 19 man/Weibull.Rd | 256 +++++------ man/bestDist.Rd | 93 ++-- man/compareDist.Rd | 55 +- man/eDist.Rd | 157 +++--- man/eval.estimation.Rd | 81 +-- man/wmle.Rd | 79 +-- vignettes/Distributions-Beta.Rmd | 185 ++++---- vignettes/Distributions-Normal.Rmd | 187 ++++---- vignettes/Distributions.Rmd | 65 +- vignettes/ParaEst-and-DistSel-by-ExtDist.Rmd | 249 +++++------ 65 files changed, 6655 insertions(+), 6952 deletions(-)
Title: Text Mining for Bahasa Malaysia
Description: It is designed to work with text written in Bahasa Malaysia. We provide
functions and data sets that will make working with Bahasa Malaysia text much easier.
For word stemming in particular, we will look up the Malay words in a dictionary and
then proceed to remove "extra suffix" as explained in Khan, Rehman Ullah,
Fitri Suraya Mohamad, Muh Inam UlHaq, Shahren Ahmad Zadi Adruce,
Philip Nuli Anding, Sajjad Nawaz Khan, and Abdulrazak Yahya Saleh Al-Hababi
(2017) <https://ijrest.net/vol-4-issue-12.html> . This package includes
a dictionary of Malay words that may be used to perform word stemming,
a dataset of Malay stop words, a dataset of sentiment words
and a dataset of normalized words.
Author: Zahier Nasrudin [aut, cre]
Maintainer: Zahier Nasrudin <zahiernasrudin@gmail.com>
Diff between malaytextr versions 0.1.2 dated 2021-10-23 and 0.1.3 dated 2023-01-17
DESCRIPTION | 12 MD5 | 32 +- NEWS.md | 42 ++ R/malayrootwords.R | 4 R/malaystopwords.R | 2 R/normalized.R |only R/sentiment_general.R |only README.md | 65 +++- build/vignette.rds |binary data/malayrootwords.rda |binary data/normalized.rda |only data/sentiment_general.rda |only inst/doc/malaytextr.R | 89 +++-- inst/doc/malaytextr.Rmd | 10 inst/doc/malaytextr.html | 683 +++++++++++++++++++++++++++++---------------- man/malayrootwords.Rd | 2 man/normalized.Rd |only man/sentiment_general.Rd |only tests/testthat.R | 8 vignettes/malaytextr.Rmd | 10 20 files changed, 655 insertions(+), 304 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include standard operations such as intersect and buffer. Raster methods include global, local, zonal, and focal computations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. 'terra' is a replacement for the 'raster' package ('terra' can do more, and it is faster and easier to use).
Author: Robert J. Hijmans [cre, aut] ,
Roger Bivand [ctb] ,
Edzer Pebesma [ctb] ,
Michael D. Sumner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.6-47 dated 2022-12-02 and 1.6-53 dated 2023-01-17
DESCRIPTION | 8 MD5 | 227 +++--- NAMESPACE | 2 NEWS.md | 1422 +++++++++++++++++++++---------------------- R/Arith_generics.R | 45 + R/RcppExports.R | 8 R/SpatRasterDataset.R | 6 R/cells.R | 2 R/extent.R | 6 R/extract.R | 7 R/focal.R | 5 R/generics.R | 30 R/geom.R | 1231 ++++++++++++++++++------------------- R/lapp.R | 8 R/levels.R | 18 R/lines.R | 8 R/ncdf.R | 4 R/plot.R | 38 - R/plot_let.R | 24 R/plot_scale.R | 54 + R/plot_vector.R | 22 R/predict.R | 13 R/rast.R | 8 R/rasterizeWin.R | 4 R/replace_layer.R | 35 - R/replace_values.R | 6 R/roll.R | 4 R/tapp.R | 101 ++- R/tiles.R | 7 R/time.R | 119 ++- R/update.R | 4 R/vect.R | 13 R/xyRowColCell.R | 8 R/zzz.R | 6 inst/colors |only inst/tinytest/test_extract.R | 3 inst/tinytest/test_merge.R |only man/arith-generic.Rd | 7 man/buffer.Rd | 2 man/compare-generics.Rd | 10 man/crop.Rd | 4 man/extract.Rd | 274 ++++---- man/factors.Rd | 5 man/headtail.Rd | 4 man/interpolate.Rd | 2 man/isvalid.Rd | 7 man/makeTiles.Rd | 4 man/mappal.Rd |only man/readwrite.Rd | 2 man/sbar.Rd | 7 man/shade.Rd | 10 man/tapp.Rd | 6 man/terra-package.Rd | 12 man/vect.Rd | 5 src/Makevars.ucrt | 2 src/NA.h | 2 src/RcppExports.cpp | 28 src/RcppFunctions.cpp | 24 src/RcppModule.cpp | 29 src/arith.cpp | 350 ++++++++-- src/crs.cpp | 2 src/crs.h | 2 src/date.h | 2 src/distRaster.cpp | 106 +++ src/distance.cpp | 2 src/distance.h | 2 src/extract.cpp | 2 src/file_utils.cpp | 2 src/file_utils.h | 2 src/focal.cpp | 2 src/gdal_algs.cpp | 2 src/gdalio.cpp | 2 src/gdalio.h | 2 src/geos_methods.cpp | 138 +++- src/geos_spat.h | 2 src/geosphere.cpp | 2 src/math_utils.cpp | 2 src/math_utils.h | 2 src/mediancut.cpp | 2 src/memory.cpp | 3 src/movingWindow.cpp | 2 src/ram.cpp | 2 src/ram.h | 2 src/raster_methods.cpp | 18 src/raster_stats.cpp | 2 src/read.cpp | 2 src/read_gdal.cpp | 8 src/read_ogr.cpp | 2 src/recycle.h | 2 src/sample.cpp | 2 src/spatBase.cpp | 36 - src/spatBase.h | 3 src/spatDataframe.cpp | 32 src/spatDataframe.h | 14 src/spatFactor.h | 2 src/spatGraph.h | 2 src/spatRaster.cpp | 22 src/spatRaster.h | 10 src/spatRasterMultiple.cpp | 2 src/spatRasterMultiple.h | 2 src/spatSources.cpp | 2 src/spatTime.cpp | 2 src/spatTime.h | 2 src/spatVector.cpp | 25 src/spatVector.h | 8 src/spatVector2.cpp |only src/spatVector2.h | 64 + src/string_utils.cpp | 2 src/string_utils.h | 2 src/vecmath.cpp | 2 src/vecmath.h | 121 +-- src/vecmathse.cpp |only src/vecmathse.h |only src/vector_methods.cpp | 2 src/write.cpp | 36 - src/write_gdal.cpp | 2 src/write_ogr.cpp | 4 117 files changed, 2936 insertions(+), 2088 deletions(-)
Title: Random Coefficient Minification Time Series Models
Description: Data sets, and functions for simulating and fitting nonlinear time series with minification and nonparametric models.
Author: L. Han [aut, cre]
Maintainer: L. Han <lengyi.han@ubc.ca>
Diff between RCMinification versions 1.1 dated 2022-03-22 and 1.2 dated 2023-01-17
DESCRIPTION | 9 +++++---- MD5 | 24 ++++++++++++++++-------- NAMESPACE | 7 ++++--- R/ARlocpoly.R |only R/ChengTS.R |only R/nonlinearAR1.sim.R |only R/sharpARlocpoly.R |only data/BCfireArea.rda |binary data/BeerVolume.rda |binary data/FWI.rda |binary data/Globaltemps.rda |binary data/longitudinalAcceleration.rda |binary data/nickel.rda |binary man/ARlocpoly.Rd |only man/ChengTS.Rd |only man/nonlinearAR1.sim.Rd |only man/sharpARlocpoly.Rd |only 17 files changed, 25 insertions(+), 15 deletions(-)
More information about RCMinification at CRAN
Permanent link
Title: Partially Ordered Sets in R
Description: Provides a set of basic tools for generating, analyzing, summarizing and visualizing finite partially ordered sets. In particular, it implements flexible and very efficient algorithms for the extraction of linear extensions and for the computation of mutual ranking probabilities and other user-defined functionals, over them. The package is meant as a computationally efficient "engine", for the implementation of data analysis procedures, on systems of multidimensional ordinal indicators and partially ordered data, in the spirit of Fattore, M. (2016) "Partially ordered sets and the measurement of multidimensional ordinal deprivation", Social Indicators Research <DOI:10.1007/s11205-015-1059-6>, and Fattore M. and Arcagni, A. (2018) "A reduced posetic approach to the measurement of multidimensional ordinal deprivation", Social Indicators Research <DOI:10.1007/s11205-016-1501-4>.
Author: Alberto Arcagni [aut, cre],
Alessandro Avellone [aut],
Marco Fattore [aut]
Maintainer: Alberto Arcagni <alberto.arcagni@uniroma1.it>
Diff between POSetR versions 1.1.0 dated 2022-05-24 and 1.1.1 dated 2023-01-17
DESCRIPTION | 10 +- MD5 | 76 ++++++++-------- build/partial.rdb |binary man/coverMatrix.Rd | 54 +++++------ man/incidenceMatrix.Rd | 54 +++++------ man/plot.poset.Rd | 150 ++++++++++++++++----------------- man/poset_from_dataframe.Rd | 84 +++++++++--------- man/poset_from_igraph.Rd | 70 +++++++-------- man/poset_from_incidence.Rd | 74 ++++++++-------- man/print.poset.Rd | 60 ++++++------- man/summary.poset.Rd | 62 ++++++------- src/RMod.cpp | 1 src/displayMessage.cpp | 1 src/displayMessage.h | 1 src/displayMessageR.cpp | 1 src/evalResult.cpp | 1 src/evalResult.h | 1 src/fleAverageHeight.cpp | 1 src/fleMutualRankingProbability.cpp | 1 src/fleMutualRankingProbability2.cpp | 1 src/fleSeparation.cpp | 1 src/functionLinearExtension.cpp | 1 src/functionLinearExtensionR.cpp | 1 src/functionLinearExtensionR.h | 1 src/linearEstensionAllLE.cpp | 1 src/linearExtension.h | 3 src/linearExtentionLatticeOfIdeals.cpp | 1 src/linearExtentionLatticeOfIdeals.h | 1 src/linearExtentionTreeOfIdeals.cpp | 1 src/linearExtentionTreeOfIdeals.h | 1 src/matrice.h | 1 src/myException.h | 1 src/poset.cpp | 3 src/poset.h | 1 src/random.cpp | 1 src/tranformExtension.h | 1 src/tranformExtensionIdentity.cpp | 1 src/utilita.cpp | 1 src/utilita.h | 1 39 files changed, 377 insertions(+), 349 deletions(-)
Title: Connect to ODBC Compatible Databases (using the DBI Interface)
Description: A DBI-compatible interface to ODBC databases.
Author: Jim Hester [aut],
Hadley Wickham [aut, cre],
Oliver Gjoneski [ctb] ,
lexicalunit [cph] ,
Google Inc. [cph] ,
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between odbc versions 1.3.3 dated 2021-11-30 and 1.3.4 dated 2023-01-17
DESCRIPTION | 43 +++---- MD5 | 58 +++++---- NAMESPACE | 1 NEWS.md | 12 + R/Connection.R | 43 ++++++- R/Driver.R | 8 - R/RcppExports.R | 4 R/Viewer.R | 34 +++++ R/db.R | 19 +++ README.md | 49 +++----- build/odbc.pdf |binary man/ConnectionAttributes.Rd |only man/dbConnect-OdbcDriver-method.Rd | 4 man/odbcConnectionColumns.Rd | 12 + man/odbcPreviewQuery.Rd |only src/Makevars.in | 2 src/Makevars.win | 2 src/RcppExports.cpp | 14 +- src/connection.cpp | 6 src/nanodbc/nanodbc.cpp | 223 +++++++++++++++++++++++++++++-------- src/nanodbc/nanodbc.h | 59 +++++++++ src/odbc_connection.cpp | 10 + src/odbc_connection.h | 3 src/odbc_result.h | 5 src/utils.cpp |only src/utils.h |only tests/testthat/helper.R | 6 tests/testthat/test-MySQL.R | 12 + tests/testthat/test-PostgreSQL.R | 13 ++ tests/testthat/test-SQLServer.R | 37 ++++++ tests/testthat/test-SQLite.R | 12 + tests/testthat/test-drivers.R | 14 -- 32 files changed, 555 insertions(+), 150 deletions(-)
Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals,
prime number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme <rb-gmp@reflex-studio.de>,
Sylvain Jasson <Sylvain.Jasson@inrae.fr>,
Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between gmp versions 0.6-9 dated 2022-12-14 and 0.6-10 dated 2023-01-17
DESCRIPTION | 8 ++--- MD5 | 16 +++++------ src/biginteger.cc | 75 ++++++++++++++++++++++++++++++++++++++++++++++++++++- src/biginteger.h | 75 +++++++++++++++-------------------------------------- src/bigintegerR.cc | 3 +- src/bigintegerR.h | 2 - src/bigvec.cc | 59 ++++++++++++++++++++--------------------- src/bigvec.h | 2 - src/matrix.cc | 45 +++++++++++++++++-------------- 9 files changed, 166 insertions(+), 119 deletions(-)
Title: Calculation of the OPTICS Cordillera
Description: Functions for calculating the OPTICS Cordillera. The OPTICS Cordillera measures the amount of 'clusteredness' in a numeric data matrix within a distance-density based framework for a given minimum number of points comprising a cluster, as described in Rusch, Hornik, Mair (2018) <doi:10.1080/10618600.2017.1349664>. There is an R native version with methods for printing, summarizing, and plotting the result.
Author: Thomas Rusch [aut, cre] ,
Patrick Mair [ctb],
Kurt Hornik [ctb]
Maintainer: Thomas Rusch <thomas.rusch@wu.ac.at>
Diff between cordillera versions 0.8-0 dated 2018-01-13 and 1.0-0 dated 2023-01-17
cordillera-0.8-0/cordillera/R/optics.R |only cordillera-0.8-0/cordillera/man/e_cordillera.Rd |only cordillera-0.8-0/cordillera/man/e_optics.Rd |only cordillera-0.8-0/cordillera/man/plot.opticse.Rd |only cordillera-0.8-0/cordillera/man/print.opticse.Rd |only cordillera-0.8-0/cordillera/man/print.summary.opticse.Rd |only cordillera-0.8-0/cordillera/man/summary.opticse.Rd |only cordillera-1.0-0/cordillera/DESCRIPTION | 30 + cordillera-1.0-0/cordillera/MD5 | 37 +- cordillera-1.0-0/cordillera/NAMESPACE | 11 cordillera-1.0-0/cordillera/NEWS | 25 + cordillera-1.0-0/cordillera/R/CAClimateIndicatorsCountyMedian-data.R | 75 +++- cordillera-1.0-0/cordillera/R/cordillera-package.R | 13 cordillera-1.0-0/cordillera/R/cordillera.R | 168 +++++----- cordillera-1.0-0/cordillera/build |only cordillera-1.0-0/cordillera/inst/CITATION | 2 cordillera-1.0-0/cordillera/inst/doc |only cordillera-1.0-0/cordillera/man/CAClimateIndicatorsCountyMedian.Rd | 79 +++- cordillera-1.0-0/cordillera/man/cordillera-package.Rd | 15 cordillera-1.0-0/cordillera/man/cordillera.Rd | 20 - cordillera-1.0-0/cordillera/man/oldcordilleraplot.Rd | 11 cordillera-1.0-0/cordillera/man/plot.cordillera.Rd | 11 cordillera-1.0-0/cordillera/vignettes |only 23 files changed, 297 insertions(+), 200 deletions(-)
Title: Spatial Point Patterns Analysis
Description: Perform first- and second-order multi-scale analyses derived from Ripley K-function (Ripley B. D. (1977) <doi:10.1111/j.2517-6161.1977.tb01615.x>), for univariate,
multivariate and marked mapped data in rectangular, circular or irregular shaped sampling windows, with tests of
statistical significance based on Monte Carlo simulations.
Author: Raphael Pelissier [aut], Francois Goreaud [aut], Philippe Verley [ctb, cre]
Maintainer: Raphael Pelissier <raphael.pelissier@ird.fr>
Diff between ads versions 1.5-8 dated 2022-11-07 and 1.5-9 dated 2023-01-17
ads-1.5-8/ads/INDEX |only ads-1.5-9/ads/DESCRIPTION | 10 ++++---- ads-1.5-9/ads/MD5 | 9 +++---- ads-1.5-9/ads/src/Zlibs.c | 8 +++--- ads-1.5-9/ads/src/triangulate.c | 49 ++-------------------------------------- ads-1.5-9/ads/src/triangulate.h | 1 6 files changed, 17 insertions(+), 60 deletions(-)
Title: Flexible Regression Models for Survival Data
Description: Programs for Martinussen and Scheike (2006), `Dynamic Regression
Models for Survival Data', Springer Verlag. Plus more recent developments.
Additive survival model, semiparametric proportional odds model, fast
cumulative residuals, excess risk models and more. Flexible competing risks
regression including GOF-tests. Two-stage frailty modelling. PLS for the
additive risk model. Lasso in the 'ahaz' package.
Author: Thomas Scheike with contributions from Torben Martinussen, Jeremy
Silver and Klaus Holst
Maintainer: Thomas Scheike <ts@biostat.ku.dk>
Diff between timereg versions 2.0.4 dated 2022-11-09 and 2.0.5 dated 2023-01-17
timereg-2.0.4/timereg/R/sim-pc-hazard.r |only timereg-2.0.4/timereg/man/invsubdist.Rd |only timereg-2.0.4/timereg/man/rchaz.Rd |only timereg-2.0.4/timereg/man/rcrisk.Rd |only timereg-2.0.4/timereg/man/sim.cause.cox.Rd |only timereg-2.0.4/timereg/man/sim.cif.Rd |only timereg-2.0.4/timereg/man/sim.cox.Rd |only timereg-2.0.4/timereg/man/simsubdist.Rd |only timereg-2.0.5/timereg/DESCRIPTION | 10 ++++----- timereg-2.0.5/timereg/MD5 | 12 +---------- timereg-2.0.5/timereg/NAMESPACE | 30 ++++++++++++++--------------- 11 files changed, 22 insertions(+), 30 deletions(-)
Title: Structurally Guided Sampling
Description: Structurally guided sampling (SGS) approaches for airborne laser scanning (ALS; LIDAR). Primary functions provide means
to generate data-driven stratifications & methods for allocating samples. Intermediate functions for calculating and extracting important information
about input covariates and samples are also included. Processing outcomes are intended to help forest and environmental management
practitioners better optimize field sample placement as well as assess and augment existing sample networks in the context of data
distributions and conditions. ALS data is the primary intended use case, however any rasterized remote sensing data can be used,
enabling data-driven stratifications and sampling approaches.
Author: Tristan RH Goodbody [aut, cre, cph]
,
Nicholas C Coops [aut] ,
Martin Queinnec [aut]
Maintainer: Tristan RH Goodbody <goodbody.t@gmail.com>
Diff between sgsR versions 1.3.2 dated 2022-11-19 and 1.3.3 dated 2023-01-17
DESCRIPTION | 8 MD5 | 106 +-- NEWS.md | 18 R/calculate_allocation.R | 22 R/calculate_coobs.R | 2 R/calculate_distance.R | 2 R/calculate_pcomp.R | 17 R/sample_ahels.R | 8 R/sample_existing.R | 137 +++- R/sample_nc.R | 4 R/sample_srs.R | 6 R/sample_systematic.R | 66 - R/strat_kmeans.R | 13 R/strat_quantiles.R | 12 R/utils-plot.R | 2 R/zzz.R | 2 README.md | 55 - build/vignette.rds |binary inst/doc/calculating.R | 25 inst/doc/calculating.Rmd | 123 ++- inst/doc/calculating.html | 344 +++++----- inst/doc/sampling.R | 171 ++--- inst/doc/sampling.Rmd | 268 ++++--- inst/doc/sampling.html | 1057 +++++++++++++++---------------- inst/doc/sgsR.R | 32 inst/doc/sgsR.Rmd | 87 +- inst/doc/sgsR.html | 223 ++++-- inst/doc/stratification.R | 23 inst/doc/stratification.Rmd | 104 ++- inst/doc/stratification.html | 266 ++++--- man/calculate_allocation.Rd | 22 man/calculate_coobs.Rd | 2 man/calculate_distance.Rd | 2 man/calculate_pcomp.Rd | 4 man/plot.Rd | 2 man/sample_ahels.Rd | 2 man/sample_existing.Rd | 12 man/sample_nc.Rd | 4 man/sample_systematic.Rd | 24 man/strat_kmeans.Rd | 6 tests/testthat/setup-testthat.R | 4 tests/testthat/test-calculate_distance.R | 1 tests/testthat/test-calculate_pop.R | 3 tests/testthat/test-sample_ahels.R | 1 tests/testthat/test-sample_balanced.R | 1 tests/testthat/test-sample_clhs.R | 2 tests/testthat/test-sample_existing.R | 18 tests/testthat/test-sample_nc.R | 6 tests/testthat/test-sample_srs.R | 8 tests/testthat/test-sample_systematic.R | 5 vignettes/calculating.Rmd | 123 ++- vignettes/sampling.Rmd | 268 ++++--- vignettes/sgsR.Rmd | 87 +- vignettes/stratification.Rmd | 104 ++- 54 files changed, 2242 insertions(+), 1672 deletions(-)
Title: Analysis of Multivariate Event Times
Description: Implementation of various statistical models for multivariate
event history data <doi:10.1007/s10985-013-9244-x>. Including multivariate
cumulative incidence models <doi:10.1002/sim.6016>, and bivariate random
effects probit models (Liability models) <doi:10.1016/j.csda.2015.01.014>.
Also contains two-stage binomial modelling that can do pairwise odds-ratio
dependence modelling based marginal logistic regression models. This is an
alternative to the alternating logistic regression approach (ALR).
Author: Klaus K. Holst [aut, cre],
Thomas Scheike [aut]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between mets versions 1.3.1 dated 2022-10-02 and 1.3.2 dated 2023-01-17
mets-1.3.1/mets/R/sim.coxph.R |only mets-1.3.2/mets/DESCRIPTION | 16 mets-1.3.2/mets/MD5 | 236 +-- mets-1.3.2/mets/NAMESPACE | 48 mets-1.3.2/mets/NEWS.md | 48 mets-1.3.2/mets/R/aalenfrailty.R | 4 mets-1.3.2/mets/R/bicomprisk.R | 10 mets-1.3.2/mets/R/binomial.regression.R | 236 +-- mets-1.3.2/mets/R/binomial.twostage.R | 25 mets-1.3.2/mets/R/biprobit.R | 6 mets-1.3.2/mets/R/biprobit.time.R | 4 mets-1.3.2/mets/R/casewise.R | 42 mets-1.3.2/mets/R/cifreg.R | 32 mets-1.3.2/mets/R/claytonakes.R | 16 mets-1.3.2/mets/R/clusterindex-reshape.R | 5 mets-1.3.2/mets/R/cor.R | 76 - mets-1.3.2/mets/R/divide.conquer.R | 45 mets-1.3.2/mets/R/dprint.R | 3 mets-1.3.2/mets/R/event.r |only mets-1.3.2/mets/R/fastapprox.R | 30 mets-1.3.2/mets/R/fastreshape.R | 11 mets-1.3.2/mets/R/gof-phreg.R | 8 mets-1.3.2/mets/R/ipw.R | 34 mets-1.3.2/mets/R/mets-package.R | 31 mets-1.3.2/mets/R/mutinomialreg.R | 15 mets-1.3.2/mets/R/onload.R | 4 mets-1.3.2/mets/R/phreg.R | 269 +++ mets-1.3.2/mets/R/phreg.par.R | 2 mets-1.3.2/mets/R/recreg.R | 662 +++++++- mets-1.3.2/mets/R/recurrent.marginal.R | 524 +++---- mets-1.3.2/mets/R/restricted.mean.R | 57 mets-1.3.2/mets/R/sim-nordic-twin.R | 18 mets-1.3.2/mets/R/sim-pc-hazard.R |only mets-1.3.2/mets/R/sim.clayton.oakes.R | 2 mets-1.3.2/mets/R/timereg-copy-package.R |only mets-1.3.2/mets/R/twin.clustertrunc.r | 13 mets-1.3.2/mets/R/twostage.R | 103 - mets-1.3.2/mets/R/wild-phreg.R | 8 mets-1.3.2/mets/README.md | 15 mets-1.3.2/mets/build/vignette.rds |binary mets-1.3.2/mets/data/TRACE.txt |only mets-1.3.2/mets/data/bmt.txt |only mets-1.3.2/mets/data/diabetes.txt |only mets-1.3.2/mets/data/melanoma.txt |only mets-1.3.2/mets/data/sTRACE.txt |only mets-1.3.2/mets/data/tTRACE.txt |only mets-1.3.2/mets/inst/doc/basic-dutils.html | 41 mets-1.3.2/mets/inst/doc/binomial-family.R | 6 mets-1.3.2/mets/inst/doc/binomial-family.Rmd | 8 mets-1.3.2/mets/inst/doc/binomial-family.html | 147 + mets-1.3.2/mets/inst/doc/binomial-twin.html | 117 - mets-1.3.2/mets/inst/doc/binreg-ate.R | 14 mets-1.3.2/mets/inst/doc/binreg-ate.Rmd | 14 mets-1.3.2/mets/inst/doc/binreg-ate.html | 194 +- mets-1.3.2/mets/inst/doc/binreg.html | 44 mets-1.3.2/mets/inst/doc/cifreg.R | 2 mets-1.3.2/mets/inst/doc/cifreg.Rmd | 2 mets-1.3.2/mets/inst/doc/cifreg.html | 47 mets-1.3.2/mets/inst/doc/haplo-discrete-ttp.html | 43 mets-1.3.2/mets/inst/doc/interval-discrete-survival.html | 45 mets-1.3.2/mets/inst/doc/marginal-cox.R | 4 mets-1.3.2/mets/inst/doc/marginal-cox.Rmd | 4 mets-1.3.2/mets/inst/doc/marginal-cox.html | 65 mets-1.3.2/mets/inst/doc/mediation-survival.html | 63 mets-1.3.2/mets/inst/doc/quantitative-twin.R | 6 mets-1.3.2/mets/inst/doc/quantitative-twin.Rmd | 6 mets-1.3.2/mets/inst/doc/quantitative-twin.html | 26 mets-1.3.2/mets/inst/doc/recurrent-events.R | 79 - mets-1.3.2/mets/inst/doc/recurrent-events.Rmd | 127 + mets-1.3.2/mets/inst/doc/recurrent-events.html | 740 +++++----- mets-1.3.2/mets/inst/doc/rmst-ate.R |only mets-1.3.2/mets/inst/doc/rmst-ate.Rmd |only mets-1.3.2/mets/inst/doc/rmst-ate.html |only mets-1.3.2/mets/inst/doc/survival-ate.R |only mets-1.3.2/mets/inst/doc/survival-ate.Rmd |only mets-1.3.2/mets/inst/doc/survival-ate.html |only mets-1.3.2/mets/inst/doc/time-to-event-family-studies-arev.R | 14 mets-1.3.2/mets/inst/doc/time-to-event-family-studies-arev.Rmd | 14 mets-1.3.2/mets/inst/doc/time-to-event-family-studies-arev.html | 92 - mets-1.3.2/mets/inst/doc/twostage-survival.html | 56 mets-1.3.2/mets/man/ClaytonOakes.Rd | 11 mets-1.3.2/mets/man/Grandom.cif.Rd | 4 mets-1.3.2/mets/man/TRACE.Rd |only mets-1.3.2/mets/man/aalenMets.Rd | 5 mets-1.3.2/mets/man/aalenfrailty.Rd | 2 mets-1.3.2/mets/man/bicomprisk.Rd | 6 mets-1.3.2/mets/man/binomial.twostage.Rd | 4 mets-1.3.2/mets/man/binreg.Rd | 4 mets-1.3.2/mets/man/binregATE.Rd | 15 mets-1.3.2/mets/man/biprobit.Rd | 6 mets-1.3.2/mets/man/bmt.Rd |only mets-1.3.2/mets/man/casewise.test.Rd | 8 mets-1.3.2/mets/man/cifreg.Rd | 4 mets-1.3.2/mets/man/cor.cif.Rd | 14 mets-1.3.2/mets/man/count.history.Rd | 5 mets-1.3.2/mets/man/diabetes.Rd |only mets-1.3.2/mets/man/divide.conquer.Rd | 9 mets-1.3.2/mets/man/divide.conquer.timereg.Rd | 30 mets-1.3.2/mets/man/dprint.Rd | 3 mets-1.3.2/mets/man/easy.binomial.twostage.Rd | 19 mets-1.3.2/mets/man/fast.approx.Rd | 2 mets-1.3.2/mets/man/fast.reshape.Rd | 11 mets-1.3.2/mets/man/ipw2.Rd | 4 mets-1.3.2/mets/man/melanoma.Rd |only mets-1.3.2/mets/man/mlogit.Rd | 2 mets-1.3.2/mets/man/phreg.Rd | 8 mets-1.3.2/mets/man/random.cif.Rd | 8 mets-1.3.2/mets/man/rchaz.Rd |only mets-1.3.2/mets/man/rcrisk.Rd |only mets-1.3.2/mets/man/recreg.Rd | 6 mets-1.3.2/mets/man/reexports.Rd |only mets-1.3.2/mets/man/resmean.phreg.Rd | 5 mets-1.3.2/mets/man/resmeanATE.Rd |only mets-1.3.2/mets/man/resmeanIPCW.Rd | 1 mets-1.3.2/mets/man/sim.cause.cox.Rd |only mets-1.3.2/mets/man/sim.cif.Rd |only mets-1.3.2/mets/man/sim.cox.Rd |only mets-1.3.2/mets/man/simRecurrent.Rd | 1 mets-1.3.2/mets/man/simRecurrentII.Rd | 2 mets-1.3.2/mets/man/summary.cor.Rd | 24 mets-1.3.2/mets/man/survival.twostage.Rd | 2 mets-1.3.2/mets/man/survivalG.Rd |only mets-1.3.2/mets/src/fastcox.cpp | 97 - mets-1.3.2/mets/src/init.c | 4 mets-1.3.2/mets/vignettes/binomial-family.Rmd | 8 mets-1.3.2/mets/vignettes/binreg-ate.Rmd | 14 mets-1.3.2/mets/vignettes/cifreg.Rmd | 2 mets-1.3.2/mets/vignettes/marginal-cox.Rmd | 4 mets-1.3.2/mets/vignettes/quantitative-twin.Rmd | 6 mets-1.3.2/mets/vignettes/quantitative-twin.org | 2 mets-1.3.2/mets/vignettes/recurrent-events.Rmd | 127 + mets-1.3.2/mets/vignettes/rmst-ate.Rmd |only mets-1.3.2/mets/vignettes/survival-ate.Rmd |only mets-1.3.2/mets/vignettes/time-to-event-family-studies-arev.Rmd | 14 134 files changed, 3203 insertions(+), 1978 deletions(-)
Title: Model Wrappers for Rule-Based Models
Description: Bindings for additional models for use with the 'parsnip'
package. Models include prediction rule ensembles (Friedman and
Popescu, 2008) <doi:10.1214/07-AOAS148>, C5.0 rules (Quinlan, 1992
ISBN: 1558602380), and Cubist (Kuhn and Johnson, 2013)
<doi:10.1007/978-1-4614-6849-3>.
Author: Emil Hvitfeldt [aut, cre] ,
Max Kuhn [aut] ,
Posit Software PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between rules versions 1.0.0 dated 2022-06-23 and 1.0.1 dated 2023-01-17
rules-1.0.0/rules/R/0_imports.R |only rules-1.0.1/rules/DESCRIPTION | 24 rules-1.0.1/rules/MD5 | 43 - rules-1.0.1/rules/NAMESPACE | 20 rules-1.0.1/rules/NEWS.md | 8 rules-1.0.1/rules/R/C5_rules.R | 6 rules-1.0.1/rules/R/cubist_rules.R | 4 rules-1.0.1/rules/R/rule_fit.R | 18 rules-1.0.1/rules/R/rules-package.R |only rules-1.0.1/rules/R/tidy_C5.0.R | 204 ++++- rules-1.0.1/rules/R/tidy_cubist.R | 34 rules-1.0.1/rules/R/tidy_xrf.R | 23 rules-1.0.1/rules/README.md | 43 - rules-1.0.1/rules/build/partial.rdb |binary rules-1.0.1/rules/inst/WORDLIST | 1 rules-1.0.1/rules/man/reexports.Rd | 2 rules-1.0.1/rules/man/rmd/tidy-example.Rmd | 124 ++- rules-1.0.1/rules/man/rules-package.Rd | 2 rules-1.0.1/rules/man/tidy.cubist.Rd | 446 +++++------ rules-1.0.1/rules/tests/testthat/_snaps/rule-fit-binomial.md |only rules-1.0.1/rules/tests/testthat/test-c5.R | 33 rules-1.0.1/rules/tests/testthat/test-rule-fit-binomial.R | 6 rules-1.0.1/rules/tests/testthat/test-rule-fit-multinomial.R | 4 rules-1.0.1/rules/tests/testthat/test-rule-fit-regression.R | 4 24 files changed, 651 insertions(+), 398 deletions(-)
Title: Continuous Optimization using Memetic Algorithms with Local
Search Chains (MA-LS-Chains) in R
Description: An implementation of an algorithm family for continuous
optimization called memetic algorithms with local search chains
(MA-LS-Chains). Memetic algorithms are hybridizations of genetic
algorithms with local search methods. They are especially suited
for continuous optimization.
Author: Christoph Bergmeir [aut, cre, cph],
Jose M. Benitez [ths],
Daniel Molina [aut, cph],
Robert Davies [ctb, cph] ,
Dirk Eddelbuettel [ctb, cph] ,
Nikolaus Hansen [ctb, cph]
Maintainer: Christoph Bergmeir <c.bergmeir@decsai.ugr.es>
Diff between Rmalschains versions 0.2-8 dated 2022-10-09 and 0.2-9 dated 2023-01-17
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ src/debug.cc | 2 +- src/domain.cc | 2 +- src/get_util.cc | 36 ++++++++++-------------------------- src/origcmaes.cc | 36 ++++++++++++++++++------------------ 7 files changed, 44 insertions(+), 56 deletions(-)
Title: Key Derivation Functions for R Based on Scrypt
Description: Functions for working with the scrypt key derivation functions
originally described by Colin Percival
<https://www.tarsnap.com/scrypt/scrypt.pdf> and in Percival and Josefsson
(2016) <doi:10.17487/RFC7914>. Scrypt is a password-based key derivation
function created by Colin Percival. The algorithm was specifically designed
to make it costly to perform large-scale custom hardware attacks by
requiring large amounts of memory.
Author: Bob Jansen [ctb, cre],
Andy Kipp [aut],
Colin Percival [aut, cph],
RStudio [cph]
Maintainer: Bob Jansen <bobjansen@gmail.com>
Diff between scrypt versions 0.1.4 dated 2022-04-19 and 0.1.5 dated 2023-01-17
DESCRIPTION | 8 MD5 | 16 NEWS | 9 README.md | 4 src/scrypt-1.1.6/Makefile.in | 95 - src/scrypt-1.1.6/aclocal.m4 | 224 +- src/scrypt-1.1.6/config.h.in | 10 src/scrypt-1.1.6/configure | 3156 +++++++++++++++++++----------------------- src/scrypt-1.1.6/configure.ac | 2 9 files changed, 1694 insertions(+), 1830 deletions(-)
Title: Censored Spatial Models
Description: It fits linear regression models for censored spatial data. It provides different estimation methods as the SAEM (Stochastic Approximation of Expectation Maximization) algorithm and seminaive that uses Kriging prediction to estimate the response at censored locations and predict new values at unknown locations. It also offers graphical tools for assessing the fitted model. More details can be found in Ordonez et al. (2018) <doi:10.1016/j.spasta.2017.12.001>.
Author: Alejandro Ordonez, Christian E. Galarza, Victor H. Lachos
Maintainer: Alejandro Ordonez <ordonezjosealejandro@gmail.com>
Diff between CensSpatial versions 3.0 dated 2022-08-15 and 3.5 dated 2023-01-17
DESCRIPTION | 8 +-- MD5 | 8 +-- R/Seminaiveprin.R | 9 +-- R/localinfmeasprin.R | 119 ++++++++++++++++++++++++++++++++++++++++++--------- man/localinfmeas.Rd | 12 ++--- 5 files changed, 117 insertions(+), 39 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-01 1.2.6
2020-02-08 1.2.5
2018-05-17 1.2.4
2018-02-06 1.2.3
2017-09-14 1.2.2
2017-07-24 1.2.1
2017-05-19 1.2.0
2017-02-02 1.1.0
2012-10-26 1.0-3
2012-06-05 1.0-2
2012-03-30 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-29 0.2.2
2020-03-25 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-06 1.0.0