Title: Collection of Household Survey Packages Conducted by IBGE
Description: Provides access to packages developed for downloading, reading and analyzing microdata
from household surveys conducted by Brazilian Institute of Geography and Statistics - IBGE.
More information can be obtained from the official website <https://www.ibge.gov.br/>.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between SIPDIBGE versions 0.1.7 dated 2022-07-16 and 0.1.8 dated 2023-01-18
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++-------- NEWS.md | 14 ++++++++++++++ R/sipd_conflicts.R | 16 ++++++++++++---- R/sipd_deps.R | 13 ++++++++++--- R/sipd_logo.R | 22 ++++++++++++++++------ R/sipd_packages.R | 13 ++++++++++--- R/sipd_sitrep.R | 37 ++++++++++++++++++++++++++----------- R/sipd_update.R | 16 ++++++++++++---- inst/extdata/pnds_logo.png |only 10 files changed, 114 insertions(+), 44 deletions(-)
Title: An Implementation of 'Interactive Brokers' API
Description: Allows interaction with 'Interactive Brokers' 'Trader Workstation'
<https://interactivebrokers.github.io/tws-api/>.
Handles the connection over the network and the exchange of messages.
Data is encoded and decoded between user and wire formats.
Data structures and functionality closely mirror the official implementations.
Author: Luca Billi [aut, cre]
Maintainer: Luca Billi <noreply.section+dev@gmail.com>
Diff between rib versions 0.18.2 dated 2022-11-24 and 0.19.0 dated 2023-01-18
DESCRIPTION | 6 +- MD5 | 20 ++++---- NEWS.md | 6 ++ R/Decoder.R | 102 +++++++++++++++++++---------------------- R/IBClient.R | 71 ++++++++++++---------------- R/codes.R | 16 ++++++ R/constants.R | 16 +----- R/enums.R | 1 R/structs.R | 1 README.md | 14 ++++- inst/data-raw/codes_struct.txt | 2 11 files changed, 130 insertions(+), 125 deletions(-)
Title: Rearranging Data
Description: Arrange data by a set of methods. Use rearrangers to reorder
data points and mutators to change their values. From basic utilities,
to centering the greatest value, to swirling in 3-dimensional space,
'rearrr' enables creativity when plotting and experimenting with data.
Author: Ludvig Renbo Olsen [aut, cre]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>
Diff between rearrr versions 0.3.2 dated 2022-11-24 and 0.3.3 dated 2023-01-18
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/circularize.R | 2 ++ R/helpers.R | 8 ++++---- build/rearrr.pdf |binary man/circularize.Rd | 2 ++ 7 files changed, 22 insertions(+), 14 deletions(-)
Title: Forest Inventory Estimation and Analysis
Description: A research estimation tool for analysts that work with sample-based
inventory data from the U.S. Department of Agriculture, Forest Service,
Forest Inventory and Analysis (FIA) Program.
Author: Tracey Frescino [aut],
Gretchen Moisen [aut],
Paul Patterson [aut],
Chris Toney [aut],
Grayson White [aut, cre]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between FIESTA versions 3.5.0 dated 2022-12-08 and 3.5.1 dated 2023-01-18
DESCRIPTION | 10 MD5 | 64 ++-- R/DBgetEvalid.R | 2 R/DBgetPlots.R | 33 +- R/DBgetXY.R | 32 +- R/ISAinternal.R | 23 - R/check.estdata.R | 2 R/check.popdataP2VEG.R | 9 R/check.popdataPLT.R | 3 R/datSumTree.R | 7 R/datSumTreeDom.R | 5 R/est.outtabs.R | 15 - R/modGBarea.R | 5 R/modGBdwm.R | 69 +++-- R/modGBp2veg.R | 490 +++++++++++++++++++++----------------- R/modGBpop.R | 53 ++-- R/modGBratio.R | 137 +++++----- R/modGBtree.R | 73 +++-- R/modMApop.R | 33 +- R/modSApop.R | 26 +- R/spGetPlots.R | 55 ++-- R/spGetSAdoms.R | 37 +- inst/doc/FIESTA_tutorial_GB.R | 2 inst/doc/FIESTA_tutorial_GB.Rmd | 3 inst/doc/FIESTA_tutorial_MA.html | 16 - inst/doc/FIESTA_tutorial_SA.html | 18 - inst/doc/FIESTA_tutorial_dat.html | 18 - man/DBgetPlots.Rd | 6 man/datSumTree.Rd | 2 man/datSumTreeDom.Rd | 2 man/modGBdwm.Rd | 4 man/modGBp2veg.Rd | 10 vignettes/FIESTA_tutorial_GB.Rmd | 3 33 files changed, 711 insertions(+), 556 deletions(-)
Title: Sampling Design for Spatially Explicit Capture-Recapture
Description: Tools for designing spatially explicit capture-recapture studies of animal populations. This is primarily a simulation manager for package 'secr'. Extensions in version 2.5.0 include costing and evaluation of detector spacing.
Author: Murray Efford [aut, cre] ,
Ian Durbach [ctb]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secrdesign versions 2.7.0 dated 2022-12-03 and 2.8.0 dated 2023-01-18
DESCRIPTION | 10 - MD5 | 21 ++-- NAMESPACE | 5 NEWS | 14 ++ R/GAoptim.R | 1 R/methods.R | 1 R/rbind.estimatetables.R |only R/run.scenarios.R | 225 +++++++++++++++++++++++++++++--------------- R/utility.R | 8 - man/figures |only man/rbind.estimatetables.Rd |only man/run.scenarios.Rd | 104 ++++++++++++++------ man/secrdesign-package.Rd | 11 +- 13 files changed, 274 insertions(+), 126 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Duncan Murdoch [aut, cre],
Daniel Adler [aut],
Oleg Nenadic [ctb],
Simon Urbanek [ctb],
Ming Chen [ctb],
Albrecht Gebhardt [ctb],
Ben Bolker [ctb],
Gabor Csardi [ctb],
Adam Strzelecki [ctb],
Alexander Senger [ctb],
The R Core Team [ctb, cph],
Dirk Ed [...truncated...]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rgl versions 0.111.6 dated 2023-01-07 and 1.0.1 dated 2023-01-18
rgl-0.111.6/rgl/demo/regression.r |only rgl-0.111.6/rgl/demo/rglExamples.R |only rgl-0.111.6/rgl/man/3dobjects.Rd |only rgl-0.111.6/rgl/man/ageSetter.Rd |only rgl-0.111.6/rgl/man/primitive.Rd |only rgl-0.111.6/rgl/man/propertySetter.Rd |only rgl-0.111.6/rgl/man/rgl.open.Rd |only rgl-0.111.6/rgl/man/rgl.setAxisCallback.Rd |only rgl-0.111.6/rgl/man/rgl.texts.Rd |only rgl-0.111.6/rgl/man/surface.Rd |only rgl-0.111.6/rgl/man/webGLcontrols.Rd |only rgl-0.111.6/rgl/man/writeWebGL.Rd |only rgl-1.0.1/rgl/DESCRIPTION | 6 rgl-1.0.1/rgl/MD5 | 121 ++-- rgl-1.0.1/rgl/NAMESPACE | 20 rgl-1.0.1/rgl/NEWS.md | 31 + rgl-1.0.1/rgl/R/axes.R | 4 rgl-1.0.1/rgl/R/callbacks.R | 3 rgl-1.0.1/rgl/R/device.R | 22 rgl-1.0.1/rgl/R/material.R | 7 rgl-1.0.1/rgl/R/r3d.rgl.R | 701 +++++++++++++++++++++++---- rgl-1.0.1/rgl/R/scene.R | 79 ++- rgl-1.0.1/rgl/R/setUserCallbacks.R | 4 rgl-1.0.1/rgl/R/shiny.R | 1 rgl-1.0.1/rgl/R/webGL.R | 2 rgl-1.0.1/rgl/R/webGLcontrols.R | 565 --------------------- rgl-1.0.1/rgl/demo/00Index | 2 rgl-1.0.1/rgl/demo/hist3d.r | 20 rgl-1.0.1/rgl/demo/lsystem.r | 8 rgl-1.0.1/rgl/demo/rgl.r | 14 rgl-1.0.1/rgl/inst/doc/WebGL.html | 38 - rgl-1.0.1/rgl/inst/doc/deprecation.Rmd | 13 rgl-1.0.1/rgl/inst/doc/deprecation.html | 16 rgl-1.0.1/rgl/inst/doc/rgl.R | 2 rgl-1.0.1/rgl/inst/doc/rgl.Rmd | 85 +-- rgl-1.0.1/rgl/inst/doc/rgl.html | 592 +++++++++------------- rgl-1.0.1/rgl/man/bbox.Rd | 13 rgl-1.0.1/rgl/man/bg.Rd | 44 + rgl-1.0.1/rgl/man/callbacks.Rd | 2 rgl-1.0.1/rgl/man/check3d.Rd | 2 rgl-1.0.1/rgl/man/elementId2Prefix.Rd | 2 rgl-1.0.1/rgl/man/light.Rd | 17 rgl-1.0.1/rgl/man/material.Rd | 155 ++--- rgl-1.0.1/rgl/man/open3d.Rd | 15 rgl-1.0.1/rgl/man/postscript.Rd | 6 rgl-1.0.1/rgl/man/primitives.Rd |only rgl-1.0.1/rgl/man/r3d.Rd | 9 rgl-1.0.1/rgl/man/rgl-defunct.Rd |only rgl-1.0.1/rgl/man/rgl-deprecated.Rd |only rgl-1.0.1/rgl/man/rgl-duplicated.Rd |only rgl-1.0.1/rgl/man/rgl-package.Rd | 4 rgl-1.0.1/rgl/man/rgl.bringtotop.Rd | 4 rgl-1.0.1/rgl/man/rgl.fns.Rd | 7 rgl-1.0.1/rgl/man/rgl.getAxisCallback.Rd |only rgl-1.0.1/rgl/man/rgl.select.Rd | 2 rgl-1.0.1/rgl/man/rglFonts.Rd |only rgl-1.0.1/rgl/man/scene.Rd | 2 rgl-1.0.1/rgl/man/scene3d.Rd | 2 rgl-1.0.1/rgl/man/select3d.Rd | 11 rgl-1.0.1/rgl/man/setAxisCallbacks.Rd | 2 rgl-1.0.1/rgl/man/shade3d.Rd | 2 rgl-1.0.1/rgl/man/snapshot.Rd | 2 rgl-1.0.1/rgl/man/surface3d.Rd | 37 + rgl-1.0.1/rgl/man/texts.Rd | 45 + rgl-1.0.1/rgl/man/viewpoint.Rd | 9 rgl-1.0.1/rgl/src/useNULL/Makevars | 4 rgl-1.0.1/rgl/tests/testthat/test-r3d.R | 18 rgl-1.0.1/rgl/tests/testthat/test-surfaces.R |only rgl-1.0.1/rgl/vignettes/deprecation.Rmd | 13 rgl-1.0.1/rgl/vignettes/rgl.Rmd | 85 +-- rgl-1.0.1/rgl/vignettes/setup.R | 7 71 files changed, 1449 insertions(+), 1428 deletions(-)
Title: Access and Analyze eBird Status and Trends Data
Description: Tools to download, load, plot, and analyze eBird Status and
Trends Data Products
(<https://science.ebird.org/en/status-and-trends>). eBird
(<https://ebird.org/home>) is a global database of bird observations
collected by member of the public. eBird Status and Trends uses these
data to model global bird abundances, range boundaries, and habitat
associations at a high spatial and temporal resolution.
Author: Matthew Strimas-Mackey [aut, cre]
,
Shawn Ligocki [aut],
Tom Auer [aut] ,
Daniel Fink [aut] ,
Cornell Lab of Ornithology [cph]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between ebirdst versions 1.2021.3 dated 2023-01-11 and 2.2021.0 dated 2023-01-18
ebirdst-1.2021.3/ebirdst/man/label_raster_stack.Rd |only ebirdst-2.2021.0/ebirdst/DESCRIPTION | 21 ebirdst-2.2021.0/ebirdst/MD5 | 53 - ebirdst-2.2021.0/ebirdst/NAMESPACE | 3 ebirdst-2.2021.0/ebirdst/NEWS.md | 6 ebirdst-2.2021.0/ebirdst/R/ebirdst-extent.R | 2 ebirdst-2.2021.0/ebirdst/R/ebirdst-ppms.R | 7 ebirdst-2.2021.0/ebirdst/R/ebirdst-subset.R | 29 ebirdst-2.2021.0/ebirdst/R/load.R | 48 - ebirdst-2.2021.0/ebirdst/R/plot.R | 8 ebirdst-2.2021.0/ebirdst/R/utils.R | 90 -- ebirdst-2.2021.0/ebirdst/inst/CITATION | 8 ebirdst-2.2021.0/ebirdst/inst/doc/ebirdst.R | 80 +- ebirdst-2.2021.0/ebirdst/inst/doc/ebirdst.Rmd | 10 ebirdst-2.2021.0/ebirdst/inst/doc/ebirdst.html | 126 ++- ebirdst-2.2021.0/ebirdst/inst/doc/rasters.R | 379 +++++----- ebirdst-2.2021.0/ebirdst/inst/doc/rasters.Rmd | 53 - ebirdst-2.2021.0/ebirdst/inst/doc/rasters.html | 177 +++- ebirdst-2.2021.0/ebirdst/man/ebirdst_extent.Rd | 2 ebirdst-2.2021.0/ebirdst/man/ebirdst_subset.Rd | 12 ebirdst-2.2021.0/ebirdst/man/figures/README-quick_start-1.png |binary ebirdst-2.2021.0/ebirdst/man/load_fac_map_parameters.Rd | 4 ebirdst-2.2021.0/ebirdst/man/load_raster.Rd | 17 ebirdst-2.2021.0/ebirdst/man/parse_raster_dates.Rd | 18 ebirdst-2.2021.0/ebirdst/tests/testthat/test_loading.R | 6 ebirdst-2.2021.0/ebirdst/tests/testthat/test_rasters.R | 45 - ebirdst-2.2021.0/ebirdst/vignettes/ebirdst.Rmd | 10 ebirdst-2.2021.0/ebirdst/vignettes/rasters.Rmd | 53 - 28 files changed, 670 insertions(+), 597 deletions(-)
Title: Negative Binomial Mixed Models Using Large-Sample Approximation
for Differential Expression Analysis of ScRNA-Seq Data
Description: A fast negative binomial mixed model for conducting association analysis of multi-subject single-cell data. It can be used for identifying marker genes, differential expression and co-expression analyses. The model includes subject-level random effects to account for the hierarchical structure in multi-subject single-cell data. See He et al. (2021) <doi:10.1038/s42003-021-02146-6>.
Author: Liang He
Maintainer: Liang He <lianghe@health.sdu.dk>
Diff between nebula versions 1.2.0 dated 2022-01-21 and 1.2.2 dated 2023-01-18
nebula-1.2.0/nebula/README.md |only nebula-1.2.2/nebula/DESCRIPTION | 12 nebula-1.2.2/nebula/MD5 | 29 - nebula-1.2.2/nebula/NAMESPACE | 2 nebula-1.2.2/nebula/R/nbresidual.R | 29 + nebula-1.2.2/nebula/R/nebula.R | 76 ++- nebula-1.2.2/nebula/build/partial.rdb |binary nebula-1.2.2/nebula/build/vignette.rds |binary nebula-1.2.2/nebula/inst/doc/nebula_example.R | 6 nebula-1.2.2/nebula/inst/doc/nebula_example.Rmd | 37 + nebula-1.2.2/nebula/inst/doc/nebula_example.html | 575 +++++++++++++++++++---- nebula-1.2.2/nebula/man/nbresidual.Rd | 4 nebula-1.2.2/nebula/man/nebula-package.Rd | 2 nebula-1.2.2/nebula/man/nebula.Rd | 9 nebula-1.2.2/nebula/src/optimization.cpp | 3 nebula-1.2.2/nebula/vignettes/nebula_example.Rmd | 37 + 16 files changed, 660 insertions(+), 161 deletions(-)
Title: Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Description: Utility package containing:
1) Facilities for working with grouped data: 'do' something to data
stratified 'by' some variables.
2) LSmeans (least-squares means), general linear estimates.
3) Restrict functions to a smaller domain.
4) Miscellaneous other utilities.
Author: Soeren Hoejsgaard <sorenh@math.aau.dk> and Ulrich Halekoh
<uhalekoh@health.sdu.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between doBy versions 4.6.15 dated 2022-12-08 and 4.6.16 dated 2023-01-18
doBy-4.6.15/doBy/data/crimeRate.txt |only doBy-4.6.15/doBy/data/haldCement.txt |only doBy-4.6.15/doBy/data/potatoes.txt |only doBy-4.6.15/doBy/inst/doc/doby.Rnw |only doBy-4.6.15/doBy/inst/doc/linest_lsmeans.Rnw |only doBy-4.6.15/doBy/inst/doc/section_fun.Rnw |only doBy-4.6.15/doBy/vignettes/doby.Rnw |only doBy-4.6.15/doBy/vignettes/linest_lsmeans.Rnw |only doBy-4.6.15/doBy/vignettes/section_fun.Rnw |only doBy-4.6.16/doBy/DESCRIPTION | 8 doBy-4.6.16/doBy/MD5 | 42 ++-- doBy-4.6.16/doBy/NAMESPACE | 2 doBy-4.6.16/doBy/NEWS.md | 9 doBy-4.6.16/doBy/R/bquote_list.R |only doBy-4.6.16/doBy/R/expr_to_fun.R | 5 doBy-4.6.16/doBy/R/section_fun.R | 246 ++++++++++++++------------ doBy-4.6.16/doBy/R/split_byrow_bycol.R | 36 ++- doBy-4.6.16/doBy/build/vignette.rds |binary doBy-4.6.16/doBy/data/crimeRate.txt.gz |only doBy-4.6.16/doBy/data/haldCement.txt.gz |only doBy-4.6.16/doBy/data/potatoes.txt.gz |only doBy-4.6.16/doBy/inst/doc/doby.pdf |binary doBy-4.6.16/doBy/inst/doc/doby.rnw |only doBy-4.6.16/doBy/inst/doc/linest_lsmeans.pdf |binary doBy-4.6.16/doBy/inst/doc/linest_lsmeans.rnw |only doBy-4.6.16/doBy/inst/doc/section_fun.pdf |binary doBy-4.6.16/doBy/inst/doc/section_fun.rnw |only doBy-4.6.16/doBy/man/bquote_fun_list.Rd |only doBy-4.6.16/doBy/man/section_fun.Rd | 42 +++- doBy-4.6.16/doBy/vignettes/doby.rnw |only doBy-4.6.16/doBy/vignettes/linest_lsmeans.rnw |only doBy-4.6.16/doBy/vignettes/section_fun.rnw |only 32 files changed, 231 insertions(+), 159 deletions(-)
Title: Bifurcation Analysis of Ordinary Differential Equation Systems
Description: Shiny application that performs bifurcation and phaseplane analysis of systems of ordinary
differential equations. The package allows for computation of equilibrium curves as a function of
a single free parameter, detection of transcritical, saddle-node and hopf bifurcation points along
these curves, and computation of curves representing these transcritical, saddle-node and hopf
bifurcation points as a function of two free parameters. The shiny-based GUI allows visualization
of the results in both 2D- and 3D-plots. The implemented methods for solution localisation and curve
continuation are based on the book "Elements of applied bifurcation theory" (Kuznetsov, Y. A., 1995;
ISBN: 0-387-94418-4).
Author: Andre M. de Roos [aut, cre]
Maintainer: Andre M. de Roos <A.M.deRoos@uva.nl>
Diff between deBif versions 0.1.5 dated 2022-04-08 and 0.1.7 dated 2023-01-18
DESCRIPTION | 8 +++--- MD5 | 34 ++++++++++++------------- NEWS.md | 20 +++++++++++++++ R/bifCheckInput.R | 20 ++++++++++++--- R/bifComputeCurves.R | 2 - R/bifServerFuncs.R | 4 ++- R/bifUI.R | 57 ++++++++++++++++++++++++------------------- R/bifurcation.R | 11 ++++---- R/phaseCheckInput.R | 2 - R/phasePlot2D.R | 4 +-- R/phaseServerFuncs.R | 4 +-- R/phaseUI.R | 29 +++++++++++++-------- R/phaseplane.R | 4 +-- build/vignette.rds |binary inst/doc/deBif-manual.pdf |binary inst/manual/deBif-manual.zip |binary src/curve.c | 25 ++++++++++++++---- src/globals.h | 3 -- 18 files changed, 145 insertions(+), 82 deletions(-)
Title: Modeling Species Distributions in Three Dimensions
Description: Facilitates modeling species' ecological niches and
geographic distributions based on occurrences and environments that
have a vertical as well as horizontal component, and projecting models
into three-dimensional geographic space. Working in three dimensions is
useful in an aquatic context when the organisms one wishes to model can
be found across a wide range of depths in the water column. The package
also contains functions to automatically generate marine training
model training regions using machine learning, and interpolate and smooth
patchily sampled environmental rasters using thin plate splines.
Davis Rabosky AR, Cox CL, Rabosky DL, Title PO, Holmes IA, Feldman A, McGuire JA (2016) <doi:10.1038/ncomms11484>.
Nychka D, Furrer R, Paige J, Sain S (2021) <doi:10.5065/D6W957CT>.
Pateiro-Lopez B, Rodriguez-Casal A (2022) <https://CRAN.R-project.org/package=alphahull>.
Author: Hannah L. Owens [aut, cre] ,
Carsten Rahbek [aut]
Maintainer: Hannah L. Owens <hannah.owens@gmail.com>
Diff between voluModel versions 0.1.8 dated 2022-11-28 and 0.1.9 dated 2023-01-18
DESCRIPTION | 8 MD5 | 26 +-- NEWS.md | 4 R/marineBackground.R | 60 +++---- R/visualizations.R | 35 ++-- inst/CITATION | 2 inst/doc/a_Introduction.R | 35 +++- inst/doc/a_Introduction.Rmd | 47 ++++- inst/doc/a_Introduction.html | 310 +++++++++++++++++++------------------ inst/doc/b_RasterProcessing.html | 12 - inst/doc/c_DataSampling.html | 14 - inst/doc/d_Visualization.html | 202 +++++++++++------------- inst/doc/e_GLMWorkflow.html | 326 +++++++++++++++++++-------------------- vignettes/a_Introduction.Rmd | 47 ++++- 14 files changed, 603 insertions(+), 525 deletions(-)
Title: L1-Norm PCA Methods
Description: Implementations of several methods for principal component analysis
using the L1 norm. The package depends on COIN-OR Clp version >=
1.17.4. The methods implemented are
PCA-L1 (Kwak 2008) <DOI:10.1109/TPAMI.2008.114>,
L1-PCA (Ke and Kanade 2003, 2005) <DOI:10.1109/CVPR.2005.309>,
L1-PCA* (Brooks, Dula, and Boone 2013) <DOI:10.1016/j.csda.2012.11.007>,
L1-PCAhp (Visentin, Prestwich and Armagan 2016)
<DOI:10.1007/978-3-319-46227-1_37>,
wPCA (Park and Klabjan 2016) <DOI: 10.1109/ICDM.2016.0054>,
awPCA (Park and Klabjan 2016) <DOI: 10.1109/ICDM.2016.0054>,
PCA-Lp (Kwak 2014) <DOI:10.1109/TCYB.2013.2262936>, and
SharpEl1-PCA (Brooks and Dula, submitted).
Author: Sapan Jot <sapan.madaan@gmail.com>, Paul Brooks
<jpbrooks@vcu.edu>,
Andrea Visentin <andrea.visentin@insight-centre.org>,
Young Woong Park <ywpark@mail.smu.edu>,
and Yi-Hui Zhou <yihui_zhou@ncsu.edu>
Maintainer: Paul Brooks <jpbrooks@vcu.edu>
Diff between pcaL1 versions 1.5.6 dated 2022-01-03 and 1.5.7 dated 2023-01-18
pcaL1-1.5.6/pcaL1/src/diff.txt |only pcaL1-1.5.7/pcaL1/ChangeLog | 8 +++ pcaL1-1.5.7/pcaL1/DESCRIPTION | 11 ++-- pcaL1-1.5.7/pcaL1/MD5 | 45 +++++++++++------- pcaL1-1.5.7/pcaL1/NAMESPACE | 3 + pcaL1-1.5.7/pcaL1/NEWS | 4 + pcaL1-1.5.7/pcaL1/R/l1projection.R | 2 pcaL1-1.5.7/pcaL1/R/plot.sharpel1rs.R |only pcaL1-1.5.7/pcaL1/R/plot.sparsel1pca.R |only pcaL1-1.5.7/pcaL1/R/sharpel1pca.R | 4 - pcaL1-1.5.7/pcaL1/R/sharpel1rs.R |only pcaL1-1.5.7/pcaL1/R/sparsel1pca.R |only pcaL1-1.5.7/pcaL1/configure | 18 +++---- pcaL1-1.5.7/pcaL1/configure.ac | 2 pcaL1-1.5.7/pcaL1/man/l1pcastar.Rd | 2 pcaL1-1.5.7/pcaL1/man/pcaL1-package.Rd | 10 ++-- pcaL1-1.5.7/pcaL1/man/plot.sharpel1rs.Rd |only pcaL1-1.5.7/pcaL1/man/plot.sparsel1pca.Rd |only pcaL1-1.5.7/pcaL1/man/sharpel1rs.Rd |only pcaL1-1.5.7/pcaL1/man/sparsel1pca.Rd |only pcaL1-1.5.7/pcaL1/src/init.c | 5 ++ pcaL1-1.5.7/pcaL1/src/l1pcastar.c | 8 +-- pcaL1-1.5.7/pcaL1/src/l1projection.c | 73 ++++++++++++++++++------------ pcaL1-1.5.7/pcaL1/src/sharpel1pca.c | 2 pcaL1-1.5.7/pcaL1/src/sharpel1pca_R.c | 4 - pcaL1-1.5.7/pcaL1/src/sharpel1rs.c |only pcaL1-1.5.7/pcaL1/src/sharpel1rs_R.c |only pcaL1-1.5.7/pcaL1/src/sparsel1pca.c |only pcaL1-1.5.7/pcaL1/src/sparsel1pca_R.c |only pcaL1-1.5.7/pcaL1/src/type.h | 32 ++++++++++++- 30 files changed, 153 insertions(+), 80 deletions(-)
Title: A Logging Utility Focus on Clinical Trial Programming Workflows
Description: A utility to facilitate the logging and review of R programs in clinical trial programming workflows.
Author: Nathan Kosiba [aut, cre],
Thomas Bermudez [aut],
Ben Straub [aut],
Michael Rimler [aut],
Nicholas Masel [aut],
GSK/Atorus JPT [cph, fnd]
Maintainer: Nathan Kosiba <nhkosiba@gmail.com>
Diff between logrx versions 0.1.1 dated 2022-09-12 and 0.2.0 dated 2023-01-18
logrx-0.1.1/logrx/man/approved_functions_init.Rd |only logrx-0.1.1/logrx/man/get_file_path.Rd |only logrx-0.1.1/logrx/man/get_library.Rd |only logrx-0.1.1/logrx/man/get_log_element.Rd |only logrx-0.1.1/logrx/man/get_logrx_metadata.Rd |only logrx-0.1.1/logrx/man/get_masked_functions.Rd |only logrx-0.1.1/logrx/man/get_session_info.Rd |only logrx-0.1.1/logrx/man/get_unapproved_use.Rd |only logrx-0.1.1/logrx/man/get_used_functions.Rd |only logrx-0.1.1/logrx/man/log_cleanup.Rd |only logrx-0.1.1/logrx/man/logrxAddin.Rd |only logrx-0.1.1/logrx/man/loudly.Rd |only logrx-0.1.1/logrx/man/run_safely_loudly.Rd |only logrx-0.1.1/logrx/man/set_log_element.Rd |only logrx-0.1.1/logrx/man/set_log_name_path.Rd |only logrx-0.1.1/logrx/man/write_errors.Rd |only logrx-0.1.1/logrx/man/write_file_name_path.Rd |only logrx-0.1.1/logrx/man/write_log_element.Rd |only logrx-0.1.1/logrx/man/write_masked_functions.Rd |only logrx-0.1.1/logrx/man/write_messages.Rd |only logrx-0.1.1/logrx/man/write_metadata.Rd |only logrx-0.1.1/logrx/man/write_output.Rd |only logrx-0.1.1/logrx/man/write_result.Rd |only logrx-0.1.1/logrx/man/write_session_info.Rd |only logrx-0.1.1/logrx/man/write_warnings.Rd |only logrx-0.1.1/logrx/tests/testthat/ref/ex1.log |only logrx-0.1.1/logrx/tests/testthat/ref/safely_loudly_test_file.log |only logrx-0.2.0/logrx/DESCRIPTION | 23 logrx-0.2.0/logrx/MD5 | 116 - logrx-0.2.0/logrx/NAMESPACE | 27 logrx-0.2.0/logrx/NEWS.md | 40 logrx-0.2.0/logrx/R/axecute.R | 37 logrx-0.2.0/logrx/R/datasets.R | 2 logrx-0.2.0/logrx/R/get.R | 62 logrx-0.2.0/logrx/R/interact.R | 20 logrx-0.2.0/logrx/R/log.R | 117 - logrx-0.2.0/logrx/R/logrxAddin.R | 18 logrx-0.2.0/logrx/R/utils-approved.R | 20 logrx-0.2.0/logrx/R/utils-execution.R | 3 logrx-0.2.0/logrx/R/writer.R | 90 logrx-0.2.0/logrx/R/zzz.R | 22 logrx-0.2.0/logrx/README.md | 52 logrx-0.2.0/logrx/build/vignette.rds |binary logrx-0.2.0/logrx/inst/doc/approved.R | 145 - logrx-0.2.0/logrx/inst/doc/approved.Rmd | 90 logrx-0.2.0/logrx/inst/doc/approved.html | 964 +++++----- logrx-0.2.0/logrx/inst/doc/execution.R |only logrx-0.2.0/logrx/inst/doc/execution.Rmd |only logrx-0.2.0/logrx/inst/doc/execution.html |only logrx-0.2.0/logrx/inst/doc/logrx.R | 36 logrx-0.2.0/logrx/inst/doc/logrx.Rmd | 112 - logrx-0.2.0/logrx/inst/doc/logrx.html | 906 ++++----- logrx-0.2.0/logrx/inst/doc/options.R |only logrx-0.2.0/logrx/inst/doc/options.Rmd |only logrx-0.2.0/logrx/inst/doc/options.html |only logrx-0.2.0/logrx/man/approved.Rd | 2 logrx-0.2.0/logrx/man/axecute.Rd | 40 logrx-0.2.0/logrx/man/build_approved.Rd | 22 logrx-0.2.0/logrx/man/log_config.Rd | 29 logrx-0.2.0/logrx/man/log_init.Rd | 11 logrx-0.2.0/logrx/man/log_remove.Rd | 12 logrx-0.2.0/logrx/man/log_write.Rd | 31 logrx-0.2.0/logrx/man/write_log_header.Rd | 14 logrx-0.2.0/logrx/man/write_unapproved_functions.Rd | 7 logrx-0.2.0/logrx/man/write_used_functions.Rd | 7 logrx-0.2.0/logrx/tests/testthat/ref/ex6.R |only logrx-0.2.0/logrx/tests/testthat/ref/run_file_test.R |only logrx-0.2.0/logrx/tests/testthat/ref/run_file_test_current_env.R |only logrx-0.2.0/logrx/tests/testthat/ref/run_file_test_parent_env.R |only logrx-0.2.0/logrx/tests/testthat/test-axecute.R | 5 logrx-0.2.0/logrx/tests/testthat/test-get.R | 30 logrx-0.2.0/logrx/tests/testthat/test-interact.R | 35 logrx-0.2.0/logrx/tests/testthat/test-log.R | 5 logrx-0.2.0/logrx/tests/testthat/test-sha1.R |only logrx-0.2.0/logrx/tests/testthat/test-writer.R | 31 logrx-0.2.0/logrx/vignettes/approved.Rmd | 90 logrx-0.2.0/logrx/vignettes/execution.Rmd |only logrx-0.2.0/logrx/vignettes/logrx.Rmd | 112 - logrx-0.2.0/logrx/vignettes/options.Rmd |only 79 files changed, 1925 insertions(+), 1460 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes ADAM (Svetunkov, 2021, <https://openforecast.org/adam/>),
Exponential Smoothing (Hyndman et al., 2008, <doi: 10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi: 10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi: 10.1080/00207543.2017.1380326>)
and several simulation functions. It also allows dealing with intermittent demand based on the
iETS framework (Svetunkov & Boylan, 2019, <doi: 10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre]
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 3.1.6 dated 2022-03-30 and 3.2.0 dated 2023-01-18
smooth-3.1.6/smooth/man/auto.msarima.Rd |only smooth-3.2.0/smooth/DESCRIPTION | 14 smooth-3.2.0/smooth/MD5 | 153 +- smooth-3.2.0/smooth/NAMESPACE | 10 smooth-3.2.0/smooth/NEWS | 51 smooth-3.2.0/smooth/R/RcppExports.R | 24 smooth-3.2.0/smooth/R/adam-es.R |only smooth-3.2.0/smooth/R/adam-msarima.R |only smooth-3.2.0/smooth/R/adam-sma.R |only smooth-3.2.0/smooth/R/adam.R | 919 ++++++++++++++--- smooth-3.2.0/smooth/R/adamGeneral.R | 81 + smooth-3.2.0/smooth/R/autoadam.R | 14 smooth-3.2.0/smooth/R/autoces.R | 14 smooth-3.2.0/smooth/R/autogum.R | 18 smooth-3.2.0/smooth/R/automsarima.R | 188 +-- smooth-3.2.0/smooth/R/autossarima.R | 26 smooth-3.2.0/smooth/R/ces.R | 38 smooth-3.2.0/smooth/R/cma.R | 10 smooth-3.2.0/smooth/R/depricator.R | 7 smooth-3.2.0/smooth/R/es.R | 270 ----- smooth-3.2.0/smooth/R/gum.R | 35 smooth-3.2.0/smooth/R/methods.R | 237 ++-- smooth-3.2.0/smooth/R/msarima.R | 219 ---- smooth-3.2.0/smooth/R/msdecompose.R | 5 smooth-3.2.0/smooth/R/oes.R | 44 smooth-3.2.0/smooth/R/oesg.R | 59 - smooth-3.2.0/smooth/R/simssarima.R | 3 smooth-3.2.0/smooth/R/sma.R | 102 - smooth-3.2.0/smooth/R/smoothCombine.R | 20 smooth-3.2.0/smooth/R/ssarima.R | 31 smooth-3.2.0/smooth/R/ssfunctions.R | 44 smooth-3.2.0/smooth/build/partial.rdb |binary smooth-3.2.0/smooth/build/vignette.rds |binary smooth-3.2.0/smooth/inst/doc/adam.R | 6 smooth-3.2.0/smooth/inst/doc/adam.Rmd | 9 smooth-3.2.0/smooth/inst/doc/adam.html | 1170 ++++++++++++++-------- smooth-3.2.0/smooth/inst/doc/ces.R | 2 smooth-3.2.0/smooth/inst/doc/ces.Rmd | 2 smooth-3.2.0/smooth/inst/doc/ces.html | 360 +++++- smooth-3.2.0/smooth/inst/doc/es.R | 54 - smooth-3.2.0/smooth/inst/doc/es.Rmd | 91 - smooth-3.2.0/smooth/inst/doc/es.html | 756 ++++++++------ smooth-3.2.0/smooth/inst/doc/gum.html | 354 +++++- smooth-3.2.0/smooth/inst/doc/oes.html | 748 ++++++++++---- smooth-3.2.0/smooth/inst/doc/simulate.html | 586 ++++++++--- smooth-3.2.0/smooth/inst/doc/sma.html | 368 +++++- smooth-3.2.0/smooth/inst/doc/smooth.html | 375 ++++++- smooth-3.2.0/smooth/inst/doc/ssarima.html | 467 ++++++-- smooth-3.2.0/smooth/man/adam.Rd | 52 smooth-3.2.0/smooth/man/auto.ces.Rd | 4 smooth-3.2.0/smooth/man/auto.gum.Rd | 4 smooth-3.2.0/smooth/man/auto.ssarima.Rd | 4 smooth-3.2.0/smooth/man/ces.Rd | 11 smooth-3.2.0/smooth/man/es.Rd | 109 +- smooth-3.2.0/smooth/man/forecast.smooth.Rd | 26 smooth-3.2.0/smooth/man/gum.Rd | 11 smooth-3.2.0/smooth/man/isFunctions.Rd | 2 smooth-3.2.0/smooth/man/msarima.Rd | 193 ++- smooth-3.2.0/smooth/man/multicov.Rd | 17 smooth-3.2.0/smooth/man/oes.Rd | 61 - smooth-3.2.0/smooth/man/oesg.Rd | 68 - smooth-3.2.0/smooth/man/plot.smooth.Rd | 4 smooth-3.2.0/smooth/man/pls.Rd | 2 smooth-3.2.0/smooth/man/reexports.Rd |only smooth-3.2.0/smooth/man/sma.Rd | 55 - smooth-3.2.0/smooth/man/smoothCombine.Rd | 6 smooth-3.2.0/smooth/man/ssarima.Rd | 9 smooth-3.2.0/smooth/src/RcppExports.cpp | 216 ++-- smooth-3.2.0/smooth/src/adamGeneral.cpp | 87 - smooth-3.2.0/smooth/src/adamGeneral.h | 29 smooth-3.2.0/smooth/src/adamRefitter.cpp | 114 -- smooth-3.2.0/smooth/src/adamSimulator.cpp | 88 - smooth-3.2.0/smooth/src/ssGeneral.cpp | 2 smooth-3.2.0/smooth/tests/testthat/test_ces.R | 2 smooth-3.2.0/smooth/tests/testthat/test_es.R | 16 smooth-3.2.0/smooth/tests/testthat/test_gum.R | 2 smooth-3.2.0/smooth/tests/testthat/test_ssarima.R | 5 smooth-3.2.0/smooth/vignettes/adam.Rmd | 9 smooth-3.2.0/smooth/vignettes/ces.Rmd | 2 smooth-3.2.0/smooth/vignettes/es.Rmd | 91 - 80 files changed, 5900 insertions(+), 3385 deletions(-)
Title: Robust Methods for High-Dimensional Data
Description: Robust methods for high-dimensional data, in particular linear
model selection techniques based on least angle regression and sparse
regression.
Author: Andreas Alfons [aut, cre] ,
Dirk Eddelbuettel [ctb]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between robustHD versions 0.7.3 dated 2022-08-12 and 0.7.4 dated 2023-01-18
DESCRIPTION | 22 +++++++++++++--------- MD5 | 16 ++++++++-------- NEWS | 8 +++++++- build/partial.rdb |binary src/fastGrplars.cpp | 4 ++-- src/fastLars.cpp | 6 +++--- src/fastLasso.cpp | 14 +++++++------- src/fastRlars.cpp | 6 +++--- src/fastSparseLTS.cpp | 6 +++--- 9 files changed, 46 insertions(+), 36 deletions(-)
Title: One-Way Tests in Independent Groups Designs
Description: Performs one-way tests in independent groups designs including homoscedastic and heteroscedastic tests. These are one-way analysis of variance (ANOVA), Welch's heteroscedastic F test, Welch's heteroscedastic F test with trimmed means and Winsorized variances, Brown-Forsythe test, Alexander-Govern test, James second order test, Kruskal-Wallis test, Scott-Smith test, Box F test and Johansen F test, Generalized tests equivalent to Parametric Bootstrap and Fiducial tests. The package performs pairwise comparisons and graphical approaches. Also, the package includes Student's t test, Welch's t test and Mann-Whitney U test for two samples. Moreover, it assesses variance homogeneity and normality of data in each group via tests and plots (Dag et al., 2018, <https://journal.r-project.org/archive/2018/RJ-2018-022/RJ-2018-022.pdf>).
Author: Osman Dag [aut, cre], Anil Dolgun [aut], N. Meric Konar [aut], Sam Weerahandi [ctb], Malwane Ananda [ctb]
Maintainer: Osman Dag <osman.dag@outlook.com>
Diff between onewaytests versions 2.6 dated 2021-04-22 and 2.7 dated 2023-01-18
DESCRIPTION | 8 +-- MD5 | 8 +-- R/box.test.R | 144 +++++++++++++++++++++++++++------------------------------ R/james.test.R | 6 -- man/ag.test.Rd | 5 - 5 files changed, 80 insertions(+), 91 deletions(-)
Title: A Bayesian Tool for Fast and Flexible Estimation of the
Reproduction Number
Description: Estimation of the instantaneous reproduction number with
Laplacian-P-splines following the methodology of Gressani et al. (2022)
<doi:10.1371/journal.pcbi.1010618>. The negative Binomial
distribution is used to model the time series of case counts. Two methods are
available for inference : (1) a sampling-free approach based on a maximum a
posteriori calibration of the hyperparameter vector and (2) a fully stochastic
approach with a Metropolis-within-Gibbs algorithm and Langevin diffusions for
efficient sampling of the posterior distribution.
Author: Oswaldo Gressani [aut, cre]
Maintainer: Oswaldo Gressani <oswaldo_gressani@hotmail.fr>
Diff between EpiLPS versions 1.0.6 dated 2022-08-08 and 1.0.7 dated 2023-01-18
DESCRIPTION | 12 +- MD5 | 18 ++- NAMESPACE | 1 NEWS.md | 6 + R/S3_epilps_plot.R | 12 ++ R/epicurve.R |only README.md | 210 +++++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/EpiLPS-vignette.html | 124 +++++++++++++----------- man/epicurve.Rd |only man/plot.epilps.Rd | 6 + 11 files changed, 219 insertions(+), 170 deletions(-)
Title: Weighted Correlation Network Analysis
Description: Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
Author: Peter Langfelder <Peter.Langfelder@gmail.com> and Steve Horvath <SHorvath@mednet.ucla.edu> with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang
Maintainer: Peter Langfelder <Peter.Langfelder@gmail.com>
Diff between WGCNA versions 1.71 dated 2022-04-22 and 1.72-1 dated 2023-01-18
Changelog | 52 +++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 8 +++--- MD5 | 35 +++++++++++++++--------------- NAMESPACE | 2 - R/Functions.R | 20 +++++++++++++++-- R/consensusTOM.R | 8 +++--- R/empiricalBayesLM.R | 10 ++++++-- R/heatmapWithLegend.R | 41 +++++++++++++++++++++++++---------- R/matchLabels.R | 24 ++++++++++++-------- R/modulePreservation.R | 6 ++--- man/moduleMergeUsingKME.Rd | 4 +-- man/overlapTable.Rd | 6 +++-- man/prependZeros.Rd | 17 ++++++++++++-- man/rgcolors.func.Rd | 4 --- src/array.h | 2 - src/corFunctions.c | 2 - src/corFunctions.h | 1 src/networkFunctions.c | 21 +----------------- src/networkFunctions.h |only 19 files changed, 179 insertions(+), 84 deletions(-)
Title: Generate Publication Ready Visualizations of Single Cell
Transcriptomics Data
Description: A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.
Author: Enrique Blanco-Carmona [cre, aut]
Maintainer: Enrique Blanco-Carmona <scpubr@gmail.com>
Diff between SCpubr versions 1.1.1 dated 2023-01-12 and 1.1.2 dated 2023-01-18
DESCRIPTION | 6 - MD5 | 12 +-- NEWS.md | 4 - R/utils.R | 5 + README.md | 2 tests/testthat/setup.R | 32 ++++---- tests/testthat/test-utils.R | 174 +++++++++++++++++++++++--------------------- 7 files changed, 123 insertions(+), 112 deletions(-)
Title: Thematic Cartography
Description: Create and integrate maps in your R workflow. This package helps
to design cartographic representations such as proportional symbols,
choropleth, typology, flows or discontinuities maps. It also offers several
features that improve the graphic presentation of maps, for instance, map
palettes, layout elements (scale, north arrow, title...), labels or legends.
See Giraud and Lambert (2017) <doi:10.1007/978-3-319-57336-6_13>.
Author: Timothee Giraud [cre, aut] ,
Nicolas Lambert [aut],
Diego Hernangomez [ctb] ,
Ian Fellows [cph]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between cartography versions 3.0.1 dated 2021-10-07 and 3.1.3 dated 2023-01-18
cartography-3.0.1/cartography/vignettes/data-raw |only cartography-3.1.3/cartography/DESCRIPTION | 16 cartography-3.1.3/cartography/MD5 | 45 cartography-3.1.3/cartography/NAMESPACE | 1 cartography-3.1.3/cartography/NEWS.md | 19 cartography-3.1.3/cartography/R/getBorders.R | 14 cartography-3.1.3/cartography/R/getOuterBorders.R | 17 cartography-3.1.3/cartography/R/getTiles.R | 571 ---------- cartography-3.1.3/cartography/R/smoothLayer.R | 29 cartography-3.1.3/cartography/R/tilesLayer.R | 21 cartography-3.1.3/cartography/R/utils.R | 2 cartography-3.1.3/cartography/README.md | 46 cartography-3.1.3/cartography/build/vignette.rds |binary cartography-3.1.3/cartography/inst/doc/cartography.R | 37 cartography-3.1.3/cartography/inst/doc/cartography.Rmd | 42 cartography-3.1.3/cartography/inst/doc/cartography.html | 271 ++-- cartography-3.1.3/cartography/inst/doc/cheatsheet.html | 5 cartography-3.1.3/cartography/inst/tinytest/test_getTiles.R | 20 cartography-3.1.3/cartography/inst/tinytest/test_smoothLayer.R | 4 cartography-3.1.3/cartography/man/getBorders.Rd | 31 cartography-3.1.3/cartography/man/getTiles.Rd | 37 cartography-3.1.3/cartography/man/smoothLayer.Rd | 18 cartography-3.1.3/cartography/man/tilesLayer.Rd | 21 cartography-3.1.3/cartography/vignettes/cartography.Rmd | 42 24 files changed, 279 insertions(+), 1030 deletions(-)
Title: Regression Analysis Linear and Nonlinear for Agriculture
Description: Linear and nonlinear regression analysis common in agricultural science articles (Archontoulis & Miguez (2015). <doi:10.2134/agronj2012.0506>). The package includes polynomial, exponential, gaussian, logistic, logarithmic, segmented, non-parametric models, among others. The functions return the model coefficients and their respective p values, coefficient of determination, root mean square error, AIC, BIC, as well as graphs with the equations automatically.
Author: Gabriel Danilo Shimizu [aut, cre]
,
Leandro Simoes Azeredo Goncalves [aut, ctb]
Maintainer: Gabriel Danilo Shimizu <shimizu@uel.br>
Diff between AgroReg versions 1.2.8 dated 2023-01-10 and 1.2.9 dated 2023-01-18
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++---------- NEWS.md | 10 ++++++++++ R/comparative_function.R | 2 +- R/extractmodel_analysis.R | 10 +++++----- R/plot_arrange.R | 6 ++++++ R/regression.R | 4 ++-- build/partial.rdb |binary man/AgroReg-package.Rd | 1 + man/comparative_model.Rd | 16 ---------------- man/plot_arrange.Rd | 6 ++++++ 11 files changed, 47 insertions(+), 39 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-03 1.0.0
Title: Spectral Modularity Clustering
Description: Implements the network clustering algorithm described in
Newman (2006) <doi:10.1103/PhysRevE.74.036104>. The complete
iterative algorithm comprises of two steps. In the first step, the
network is expressed in terms of its leading eigenvalue and
eigenvector and recursively partition into two communities.
Partitioning occurs if the maximum positive
eigenvalue is greater than the tolerance (10e-5) for the current
partition, and if it results in a positive contribution to the
Modularity.
Given an initial separation using the leading eigen step, 'rSpectral'
then continues to maximise for the change in Modularity using a
fine-tuning step - or variate thereof. The first stage here is to
find the node which, when moved from one community to another,
gives the maximum change in Modularity. This node’s community is
then fixed and we repeat the process until all nodes have been moved.
The whole process is repeated from this new state until the change
in the Modularity, between the new and o [...truncated...]
Author: Colin Mclean [aut] ,
Anatoly Sorokin [aut, cre]
Maintainer: Anatoly Sorokin <lptolik@gmail.com>
Diff between rSpectral versions 1.0.0.9 dated 2022-08-19 and 1.0.0.10 dated 2023-01-18
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS.md |only build/partial.rdb |binary src/readfile.cpp | 10 ++++++---- 5 files changed, 13 insertions(+), 10 deletions(-)
Title: Syntax Highlighter
Description: Syntax highlighter for R code based on the results of the R
parser. Rendering in HTML and latex markup. Custom Sweave driver
performing syntax highlighting of R code chunks.
Author: Hadley Wickham [cre],
Romain Francois [aut],
Andre Simon [ctb]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between highlight versions 0.5.0 dated 2019-12-15 and 0.5.1 dated 2023-01-18
DESCRIPTION | 31 ++++++++++++------------------- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ README.md | 4 ++-- man/highlight.Rd | 4 ++-- man/translator_latex.Rd | 4 ++-- src/astyle.h | 8 ++++++-- src/codegenerator.cpp | 2 +- src/configurationreader.cpp | 5 ++--- src/rtfgenerator.cpp | 2 +- 10 files changed, 41 insertions(+), 41 deletions(-)
Title: Interface to the 'MODIS Land Products Subsets' Web Services
Description: Programmatic interface to the Oak Ridge National Laboratories
'MODIS Land Products Subsets' web services
(<https://modis.ornl.gov/data/modis_webservice.html>). Allows for easy
downloads of 'MODIS' time series directly to your R workspace or
your computer.
Author: Koen Hufkens [aut, cre] ,
BlueGreen Labs [cph, fnd]
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>
Diff between MODISTools versions 1.1.3 dated 2023-01-08 and 1.1.4 dated 2023-01-18
DESCRIPTION | 6 MD5 | 10 R/mt_to_terra.R | 2 inst/CITATION | 4 inst/doc/modistools-vignette.html | 308 ++++++--------------------- tests/testthat/test_coordinate_conversions.R | 11 6 files changed, 98 insertions(+), 243 deletions(-)
Title: Utilities for Well-Known Geometry Vectors
Description: Provides extra utilities for well-known formats in the
'wk' package that are outside the scope of that package. Utilities
to parse coordinates from data frames, plot well-known geometry
vectors, extract meta information from well-known geometry vectors,
and calculate bounding boxes are provided.
Author: Dewey Dunnington [aut, cre]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between wkutils versions 0.1.2 dated 2022-10-09 and 0.1.3 dated 2023-01-18
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ src/wk/io-string.hpp | 1 + 4 files changed, 11 insertions(+), 6 deletions(-)
Title: Run Predictions Inside the Database
Description: It parses a fitted 'R' model object, and returns a formula in
'Tidy Eval' code that calculates the predictions. It works with
several databases back-ends because it leverages 'dplyr' and 'dbplyr'
for the final 'SQL' translation of the algorithm. It currently
supports lm(), glm(), randomForest(), ranger(), earth(),
xgb.Booster.complete(), cubist(), and ctree() models.
Author: Edgar Ruiz [aut, cre],
Max Kuhn [aut]
Maintainer: Edgar Ruiz <edgar@posit.co>
Diff between tidypredict versions 0.4.9 dated 2022-05-25 and 0.5 dated 2023-01-18
DESCRIPTION | 21 +-- MD5 | 50 +++---- NEWS.md | 16 ++ R/model-earth.R | 35 +++-- R/model-xgboost.R | 72 +++++++---- R/test-predictions.R | 9 - build/vignette.rds |binary inst/doc/cubist.html | 126 ++++++++++--------- inst/doc/glm.html | 130 ++++++++++---------- inst/doc/lm.html | 130 ++++++++++---------- inst/doc/mars.html | 158 +++++++++++++------------ inst/doc/non-r.html | 126 ++++++++++--------- inst/doc/ranger.html | 124 ++++++++++--------- inst/doc/regression.html | 14 +- inst/doc/rf.html | 124 ++++++++++--------- inst/doc/save.html | 132 ++++++++++---------- inst/doc/sql.html | 164 ++++++++++++++------------ inst/doc/tree.html | 14 +- inst/doc/xgboost.R | 8 - inst/doc/xgboost.Rmd | 8 - inst/doc/xgboost.html | 174 +++++++++++++-------------- man/tidypredict-package.Rd | 7 - tests/testthat/_snaps/earth.md | 9 + tests/testthat/_snaps/xgboost.md | 198 ++++++++++++++++++++++++++++++- tests/testthat/test_xgboost.R | 246 +++++++++++++++------------------------ vignettes/xgboost.Rmd | 8 - 26 files changed, 1186 insertions(+), 917 deletions(-)
Title: Tidy Tools for Paleoenvironmental Archives
Description: Provides a set of functions with a common framework for age-depth model management,
stratigraphic visualization, and common statistical transformations. The focus of the
package is stratigraphic visualization, for which 'ggplot2' components are provided
to reproduce the scales, geometries, facets, and theme elements commonly used in
publication-quality stratigraphic diagrams. Helpers are also provided to reproduce
the exploratory statistical summaries that are frequently included on
stratigraphic diagrams. See Dunnington et al. (2021) <doi:10.18637/jss.v101.i07>.
Author: Dewey Dunnington [aut, cre, cph]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between tidypaleo versions 0.1.2 dated 2022-02-24 and 0.1.3 dated 2023-01-18
DESCRIPTION | 8 MD5 | 50 +- NEWS.md | 5 R/data.R | 4 R/ggstrat-plot_addons.R | 4 R/nested_chclust.R | 4 R/nested_data_matrix.R | 8 build/partial.rdb |binary build/vignette.rds |binary inst/doc/age_depth.html | 356 ++++++++++++--- inst/doc/nested_analysis.html | 517 ++++++++++++++++------- inst/doc/strat_diagrams.Rmd | 2 inst/doc/strat_diagrams.html | 670 +++++++++++++++++++++++------- man/figures/README-keji-strat-1.png |binary man/halifax_lakes_plottable.Rd | 2 man/keji_lakes_plottable.Rd | 2 man/tidypaleo-package.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test-age_depth_model.R | 1 tests/testthat/test-data_eval.R | 1 tests/testthat/test-ggstrat-plot_addons.R | 1 tests/testthat/test-ggstrat.R | 1 tests/testthat/test-nested_chclust.R | 2 tests/testthat/test-nested_data_matrix.R | 1 tests/testthat/test-nested_prcomp.R | 1 vignettes/strat_diagrams.Rmd | 2 26 files changed, 1233 insertions(+), 411 deletions(-)
Title: Robust Small Area Estimation
Description: Methods to fit robust alternatives to commonly used models used in
Small Area Estimation. The methods here used are based on best linear
unbiased predictions and linear mixed models. At this time available models
include area level models incorporating spatial and temporal correlation in
the random effects.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between saeRobust versions 0.3.0 dated 2022-06-13 and 0.4.0 dated 2023-01-18
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 5 +++++ build/vignette.rds |binary inst/doc/fixedPoint.html | 19 +++++++++++++------ tests/testthat.R | 6 ++++-- tests/testthat/test-rfh.R | 4 ++++ 7 files changed, 35 insertions(+), 17 deletions(-)
Title: Loading Data from 'Google Ads API'
Description: Interface for loading data from 'Google Ads API',
see <https://developers.google.com/google-ads/api/docs/start>.
Package provide function for authorization and loading reports.
Author: Alexey Seleznev [aut, cre] ,
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rgoogleads versions 0.8.0 dated 2022-08-12 and 0.8.1 dated 2023-01-18
DESCRIPTION | 6 MD5 | 102 +-- NAMESPACE | 102 +-- NEWS.md | 3 R/gads_auth.R | 816 +++++++++++++-------------- R/gads_check_errors.R | 200 +++--- R/gads_get_account_hierarchy.R | 162 ++--- R/gads_get_fields.R | 110 +-- R/gads_get_keywords.R | 128 ++-- R/gads_get_report_helper.R | 272 ++++----- R/gads_utils.R | 282 ++++----- R/rgoogleads_package.R | 132 ++-- R/zzz.R | 222 +++---- README.md | 384 ++++++------ build/vignette.rds |binary inst/doc/migrate_from_radrowds_us.R | 26 inst/doc/migrate_from_radrowds_us.Rmd | 30 inst/doc/migrate_from_radrowds_us.html | 149 ++-- inst/doc/migrate_from_radwords_ru.R | 26 inst/doc/migrate_from_radwords_ru.Rmd | 30 inst/doc/migrate_from_radwords_ru.html | 148 ++-- man/gads_auth.Rd | 224 +++---- man/gads_auth_configure.Rd | 208 +++--- man/gads_check_errors.Rd | 46 - man/gads_customer.Rd | 44 - man/gads_customer_id_from_env.Rd | 28 man/gads_customer_id_to_env.Rd | 34 - man/gads_deauth.Rd | 56 - man/gads_fix_names.Rd | 34 - man/gads_get_accessible_customers.Rd | 44 - man/gads_get_account_hierarchy.Rd | 70 +- man/gads_get_ad_group_criterions.Rd | 268 ++++---- man/gads_get_ad_groups.Rd | 140 ++-- man/gads_get_ads.Rd | 304 +++++----- man/gads_get_campaigns.Rd | 170 ++--- man/gads_get_fields.Rd | 50 - man/gads_get_geo_targets.Rd | 60 - man/gads_get_keywords.Rd | 116 +-- man/gads_get_metadata.Rd | 90 +- man/gads_get_report.Rd | 278 ++++----- man/gads_has_token.Rd | 40 - man/gads_keyword_plan_forecast_metrics.Rd | 104 +-- man/gads_keyword_plan_forecast_timeseries.Rd | 104 +-- man/gads_keyword_plan_historical_metrics.Rd | 106 +-- man/gads_last_request_ids.Rd | 38 - man/gads_set_customer_id.Rd | 34 - man/gads_set_login_customer_id.Rd | 34 - man/gads_token.Rd | 52 - man/gads_user.Rd | 38 - man/rgoogleads-package.Rd | 140 ++-- vignettes/migrate_from_radrowds_us.Rmd | 30 vignettes/migrate_from_radwords_ru.Rmd | 30 52 files changed, 3177 insertions(+), 3167 deletions(-)
Title: Utilities for using the 'COM(P)ADRE' Matrix Model Database
Description: Utility functions for interacting with the 'COMPADRE' and
'COMADRE' databases of matrix population models. Described in Jones et
al. (2021) <doi:10.1101/2021.04.26.441330>.
Author: Patrick Barks [aut] ,
Danny Buss [aut],
Roberto Salguero-Gomez [aut] ,
Iain Stott [aut] ,
William K. Petry [aut] ,
Tamora James [aut] ,
Owen Jones [aut, cre] ,
Julia Jones [aut] ,
Gesa Roemer [aut] ,
Sam Levin [aut]
Maintainer: Owen Jones <jones@biology.sdu.dk>
Diff between Rcompadre versions 1.1.0 dated 2021-10-15 and 1.2.0 dated 2023-01-18
DESCRIPTION | 83 +--- MD5 | 146 +++---- NEWS.md | 8 R/ClassUnionMethods.R | 475 +++++++++++++--------- R/CompadreDB-Methods.R | 123 +++-- R/CompadreDB-Subsetting.R | 125 +++--- R/CompadreDB-Tidyverse.R | 96 ++-- R/CompadreDB.R | 341 +++++++++------- R/CompadreMat.R | 146 +++---- R/cdb_build_cdb.R | 2 R/cdb_check_species.R | 21 - R/cdb_collapse.R | 91 ++-- R/cdb_compare.R | 118 ++--- R/cdb_fetch.R | 96 +++- R/cdb_flatten.R | 17 R/cdb_id.R | 26 - R/cdb_id_stages.R | 28 - R/cdb_id_studies.R | 22 - R/cdb_mean_matF.R | 44 +- R/cdb_metadata.R | 22 - R/cdb_rbind.R | 40 + R/cdb_unflatten.R | 45 +- R/cdb_unnest.R | 63 +-- R/data.R | 46 +- R/mpm_mean.R | 54 +- R/mpm_methods.R | 171 ++++---- R/string_representation.R | 40 - R/zzz.R | 4 README.md | 6 build/vignette.rds |binary inst/CITATION | 14 inst/WORDLIST | 1 inst/doc/a01_GettingStarted.html | 580 ++++++++++++++++++++-------- inst/doc/a02_RcompadreTidy.Rmd | 2 inst/doc/a02_RcompadreTidy.html | 472 ++++++++++++++++++---- inst/doc/a03_VectorisingRcompadre.html | 425 ++++++++++++++++---- inst/doc/a04_ObtainingReferences.html | 345 +++++++++++++--- inst/doc/a05_UsingYourOwnData.html | 478 ++++++++++++++++++----- man/CompadreDB-Subsetting.Rd | 4 man/CompadreDB.Rd | 1 man/CompadreLegacy.Rd | 6 man/CompadreMatrixMethods.Rd | 6 man/as_cdb.Rd | 1 man/cdb_collapse.Rd | 6 man/cdb_fetch.Rd | 36 + man/cdb_metadata.Rd | 2 man/cdb_unflatten.Rd | 2 man/cdb_unnest.Rd | 4 tests/spelling.R | 9 tests/testthat/test-ClassUnion.R | 21 - tests/testthat/test-CompadreDB-Methods.R | 37 - tests/testthat/test-CompadreDB-Subsetting.R | 46 +- tests/testthat/test-CompadreDB-Tidyverse.R | 40 - tests/testthat/test-CompadreDB.R | 26 - tests/testthat/test-CompadreMat.R | 10 tests/testthat/test-as_cdb.R | 6 tests/testthat/test-cdb_check_species.R | 10 tests/testthat/test-cdb_collapse.R | 8 tests/testthat/test-cdb_compare.R | 8 tests/testthat/test-cdb_fetch.R | 18 tests/testthat/test-cdb_flag.R | 20 tests/testthat/test-cdb_flatten.R | 5 tests/testthat/test-cdb_id.R | 5 tests/testthat/test-cdb_id_stages.R | 5 tests/testthat/test-cdb_id_studies.R | 5 tests/testthat/test-cdb_mean_matF.R | 4 tests/testthat/test-cdb_metadata.R | 8 tests/testthat/test-cdb_rbind.R | 18 tests/testthat/test-cdb_unflatten.R | 5 tests/testthat/test-cdb_unnest.R | 7 tests/testthat/test-mpm_mean.R | 41 - tests/testthat/test-mpm_methods.R | 8 tests/testthat/test-string_representation.R | 27 - vignettes/a02_RcompadreTidy.Rmd | 2 74 files changed, 3430 insertions(+), 1853 deletions(-)
Title: Visualizations of Distributions and Uncertainty
Description: Provides primitives for visualizing distributions using 'ggplot2' that are particularly tuned for
visualizing uncertainty in either a frequentist or Bayesian mode. Both analytical distributions (such as
frequentist confidence distributions or Bayesian priors) and distributions represented as samples (such as
bootstrap distributions or Bayesian posterior samples) are easily visualized. Visualization primitives include
but are not limited to: points with multiple uncertainty intervals,
eye plots (Spiegelhalter D., 1999) <https://ideas.repec.org/a/bla/jorssa/v162y1999i1p45-58.html>,
density plots, gradient plots, dot plots (Wilkinson L., 1999) <doi:10.1080/00031305.1999.10474474>,
quantile dot plots (Kay M., Kola T., Hullman J., Munson S., 2016) <doi:10.1145/2858036.2858558>,
complementary cumulative distribution function
barplots (Fernandes M., Walls L., Munson S., Hullman J., Kay M., 2018) <doi:10.1145/3173574.3173718>,
and fit curves with multiple uncertainty ri [...truncated...]
Author: Matthew Kay [aut, cre],
Brenton M. Wiernik [ctb]
Maintainer: Matthew Kay <mjskay@northwestern.edu>
Diff between ggdist versions 3.2.0 dated 2022-07-19 and 3.2.1 dated 2023-01-18
ggdist-3.2.0/ggdist/tests/testthat/_snaps/test.geom_dotsinterval/swarm-both.svg |only ggdist-3.2.0/ggdist/tests/testthat/_snaps/test.geom_dotsinterval/swarm-bottom.svg |only ggdist-3.2.0/ggdist/tests/testthat/_snaps/test.geom_dotsinterval/swarm-top.svg |only ggdist-3.2.0/ggdist/tests/testthat/_snaps/test.geom_dotsinterval/weave-both.svg |only ggdist-3.2.0/ggdist/tests/testthat/_snaps/test.geom_dotsinterval/weave-bottom.svg |only ggdist-3.2.0/ggdist/tests/testthat/_snaps/test.geom_dotsinterval/weave-top.svg |only ggdist-3.2.0/ggdist/tests/testthat/fontconfig-helper.R |only ggdist-3.2.1/ggdist/DESCRIPTION | 44 ggdist-3.2.1/ggdist/MD5 | 423 ++-- ggdist-3.2.1/ggdist/NAMESPACE | 36 ggdist-3.2.1/ggdist/NEWS.md | 54 ggdist-3.2.1/ggdist/R/abstract_geom.R | 79 ggdist-3.2.1/ggdist/R/abstract_stat.R | 38 ggdist-3.2.1/ggdist/R/abstract_stat_slabinterval.R | 33 ggdist-3.2.1/ggdist/R/auto_partial.R |only ggdist-3.2.1/ggdist/R/binning_methods.R | 279 ++ ggdist-3.2.1/ggdist/R/curve_interval.R | 2 ggdist-3.2.1/ggdist/R/cut_cdf_qi.R | 12 ggdist-3.2.1/ggdist/R/density.R |only ggdist-3.2.1/ggdist/R/distributions.R | 258 ++ ggdist-3.2.1/ggdist/R/draw_key_slabinterval.R | 6 ggdist-3.2.1/ggdist/R/geom_dotsinterval.R | 300 ++- ggdist-3.2.1/ggdist/R/geom_interval.R | 7 ggdist-3.2.1/ggdist/R/geom_lineribbon.R | 78 ggdist-3.2.1/ggdist/R/geom_pointinterval.R | 6 ggdist-3.2.1/ggdist/R/geom_slab.R | 13 ggdist-3.2.1/ggdist/R/geom_slabinterval.R | 229 ++ ggdist-3.2.1/ggdist/R/geom_swarm.R |only ggdist-3.2.1/ggdist/R/guide_rampbar.R | 6 ggdist-3.2.1/ggdist/R/point_interval.R | 13 ggdist-3.2.1/ggdist/R/pr.R |only ggdist-3.2.1/ggdist/R/rd.R | 79 ggdist-3.2.1/ggdist/R/rd_dotsinterval.R |only ggdist-3.2.1/ggdist/R/rd_lineribbon.R | 51 ggdist-3.2.1/ggdist/R/rd_slabinterval.R | 288 --- ggdist-3.2.1/ggdist/R/scale_.R | 34 ggdist-3.2.1/ggdist/R/scale_colour_ramp.R | 6 ggdist-3.2.1/ggdist/R/scale_side_mirrored.R |only ggdist-3.2.1/ggdist/R/smooth.R |only ggdist-3.2.1/ggdist/R/stat_dotsinterval.R | 39 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ggdist-3.2.1/ggdist/inst/doc/lineribbon.html | 227 +- ggdist-3.2.1/ggdist/inst/doc/slabinterval.R | 82 ggdist-3.2.1/ggdist/inst/doc/slabinterval.Rmd | 86 ggdist-3.2.1/ggdist/inst/doc/slabinterval.html | 346 +-- ggdist-3.2.1/ggdist/man/Pr_.Rd |only ggdist-3.2.1/ggdist/man/RankCorr.Rd | 74 ggdist-3.2.1/ggdist/man/automatic-partial-functions.Rd |only ggdist-3.2.1/ggdist/man/bin_dots.Rd | 32 ggdist-3.2.1/ggdist/man/curve_interval.Rd | 2 ggdist-3.2.1/ggdist/man/cut_cdf_qi.Rd | 12 ggdist-3.2.1/ggdist/man/density_auto.Rd |only ggdist-3.2.1/ggdist/man/density_bounded.Rd |only ggdist-3.2.1/ggdist/man/density_unbounded.Rd |only ggdist-3.2.1/ggdist/man/geom_dots.Rd |only ggdist-3.2.1/ggdist/man/geom_dotsinterval.Rd | 261 +- ggdist-3.2.1/ggdist/man/geom_interval.Rd | 44 ggdist-3.2.1/ggdist/man/geom_lineribbon.Rd | 26 ggdist-3.2.1/ggdist/man/geom_pointinterval.Rd | 44 ggdist-3.2.1/ggdist/man/geom_slab.Rd | 45 ggdist-3.2.1/ggdist/man/geom_slabinterval.Rd | 49 ggdist-3.2.1/ggdist/man/geom_swarm.Rd 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ggdist-3.2.1/ggdist/man/stat_lineribbon.Rd | 20 ggdist-3.2.1/ggdist/man/stat_pointinterval.Rd | 44 ggdist-3.2.1/ggdist/man/stat_ribbon.Rd | 18 ggdist-3.2.1/ggdist/man/stat_slab.Rd | 58 ggdist-3.2.1/ggdist/man/stat_slabinterval.Rd | 63 ggdist-3.2.1/ggdist/man/tidy-format-translators.Rd | 6 ggdist-3.2.1/ggdist/man/weighted_quantile.Rd |only ggdist-3.2.1/ggdist/tests/testthat/Rplots.pdf |binary ggdist-3.2.1/ggdist/tests/testthat/_snaps/test.curve_interval/conditional-curve-interval-with-mhd.svg | 8 ggdist-3.2.1/ggdist/tests/testthat/_snaps/test.curve_interval/curve-interval-with-bd-mbd.svg | 4 ggdist-3.2.1/ggdist/tests/testthat/_snaps/test.curve_interval/curve-interval-with-mhd.svg | 4 ggdist-3.2.1/ggdist/tests/testthat/_snaps/test.geom_dotsinterval/bin-dot-order-kept.svg | 96 - ggdist-3.2.1/ggdist/tests/testthat/_snaps/test.geom_dotsinterval/bin-dot-order.svg | 96 - ggdist-3.2.1/ggdist/tests/testthat/_snaps/test.geom_dotsinterval/coord-flip-with-dotsinterval.svg | 26 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ggdist-3.2.1/ggdist/tests/testthat/test.scale_.R | 9 ggdist-3.2.1/ggdist/tests/testthat/test.scale_colour_ramp.R | 20 ggdist-3.2.1/ggdist/tests/testthat/test.scale_side_mirrored.R |only ggdist-3.2.1/ggdist/tests/testthat/test.smooth.R |only ggdist-3.2.1/ggdist/tests/testthat/test.stat_dist_slabinterval.R | 277 ++ ggdist-3.2.1/ggdist/tests/testthat/test.stat_sample_slabinterval.R | 40 ggdist-3.2.1/ggdist/tests/testthat/test.weighted_ecdf.R |only ggdist-3.2.1/ggdist/tests/testthat/test.weighted_hist.R |only ggdist-3.2.1/ggdist/tests/testthat/test.weighted_quantile.R |only ggdist-3.2.1/ggdist/vignettes/dotsinterval.Rmd | 398 +++- ggdist-3.2.1/ggdist/vignettes/freq-uncertainty-vis.Rmd | 4 ggdist-3.2.1/ggdist/vignettes/lineribbon.Rmd | 49 ggdist-3.2.1/ggdist/vignettes/slabinterval.Rmd | 86 238 files changed, 5993 insertions(+), 3234 deletions(-)
Title: Tools for Using Fonts
Description: Tools to using fonts other than the standard PostScript fonts.
This package makes it easy to use system TrueType fonts and with PDF or
PostScript output files, and with bitmap output files in Windows. extrafont
can also be used with fonts packaged specifically to be used with, such as
the fontcm package, which has Computer Modern PostScript fonts with math
symbols.
Author: Winston Chang <winston@stdout.org>
Maintainer: Winston Chang <winston@stdout.org>
Diff between extrafont versions 0.18 dated 2022-04-12 and 0.19 dated 2023-01-18
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 8 ++++++++ R/truetype.r | 1 + R/type1.r | 2 +- 5 files changed, 17 insertions(+), 8 deletions(-)
Title: Ranked Voting Election Audits with Dirichlet-Trees
Description: Perform ballot-polling Bayesian audits for ranked voting elections
using Dirichlet-tree prior distributions. Everest et al. (2022)
<arXiv:2206.14605>, <arXiv:2209.03881>.
Author: Floyd Everest [aut, cre, cph] ,
Damjan Vukcevic [aut]
Maintainer: Floyd Everest <me@floydeverest.com>
Diff between elections.dtree versions 1.1.0 dated 2022-11-28 and 1.1.1 dated 2023-01-18
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 7 ++++++- build/partial.rdb |binary inst/WORDLIST | 1 + src/R_tree.cpp | 10 ++++++---- 6 files changed, 21 insertions(+), 13 deletions(-)
More information about elections.dtree at CRAN
Permanent link
Title: Easy Dockerfile Creation from R
Description: Build a Dockerfile straight from your R session.
'dockerfiler' allows you to create step by step a Dockerfile, and
provide convenient tools to wrap R code inside this Dockerfile.
Author: Colin Fay [cre, aut] ,
Vincent Guyader [aut] ,
Josiah Parry [aut] ,
Sebastien Rochette [aut]
Maintainer: Colin Fay <contact@colinfay.me>
Diff between dockerfiler versions 0.2.0 dated 2022-07-06 and 0.2.1 dated 2023-01-18
dockerfiler-0.2.0/dockerfiler/tests/testthat/DESCRIPTION |only dockerfiler-0.2.1/dockerfiler/DESCRIPTION | 11 dockerfiler-0.2.1/dockerfiler/MD5 | 33 dockerfiler-0.2.1/dockerfiler/NEWS.md | 6 dockerfiler-0.2.1/dockerfiler/R/dockerfile.R | 300 +++- dockerfiler-0.2.1/dockerfiler/R/dockerignore.R | 9 dockerfiler-0.2.1/dockerfiler/R/get_sysreqs.R | 39 dockerfiler-0.2.1/dockerfiler/build/vignette.rds |binary dockerfiler-0.2.1/dockerfiler/inst/doc/dockerfile-from-renv-lock.html | 124 +- dockerfiler-0.2.1/dockerfiler/inst/doc/dockerfiler.html | 128 +- dockerfiler-0.2.1/dockerfiler/inst/renv_Dockefile | 7 dockerfiler-0.2.1/dockerfiler/man/Dockerfile.Rd | 460 +++++-- dockerfiler-0.2.1/dockerfiler/tests/testthat/DESCRIPTION__ |only dockerfiler-0.2.1/dockerfiler/tests/testthat/Dockerfile |only dockerfiler-0.2.1/dockerfiler/tests/testthat/renv.lock | 612 ---------- dockerfiler-0.2.1/dockerfiler/tests/testthat/test-dock_from_desc.R | 107 - dockerfiler-0.2.1/dockerfiler/tests/testthat/test-dock_from_renv.R | 56 dockerfiler-0.2.1/dockerfiler/tests/testthat/test-dockerbuild.R | 48 dockerfiler-0.2.1/dockerfiler/tests/testthat/test-get_sysreqs.R |only dockerfiler-0.2.1/dockerfiler/tests/testthat/test-utils.R |only 20 files changed, 877 insertions(+), 1063 deletions(-)
More information about CopernicusMarine at CRAN
Permanent link
Title: A Parametric Method for Generating Synthetic Data
Description: Generates synthetic data distributions to enable testing various modelling techniques in ways that real data does not allow. Noise can be added in a controlled manner such that the data seems real. This methodology is generic and therefore benefits both the academic and industrial research.
Author: Sidharth Macherla [aut, cre]
Maintainer: Sidharth Macherla <msidharthrasik@gmail.com>
Diff between conjurer versions 1.7.0 dated 2023-01-17 and 1.7.1 dated 2023-01-18
DESCRIPTION | 6 - MD5 | 16 +-- NEWS.md | 3 build/vignette.rds |binary inst/doc/industry_example.Rmd | 2 inst/doc/industry_example.html | 170 ++++++++++++++++----------------- inst/doc/introduction_to_conjurer.Rmd | 2 vignettes/industry_example.Rmd | 2 vignettes/introduction_to_conjurer.Rmd | 2 9 files changed, 103 insertions(+), 100 deletions(-)
Title: Tools for Cleaning Rectangular Data
Description: A dependency-free collection of simple functions for cleaning
rectangular data. This package allows to detect, count and replace values
or discard rows/columns using a predicate function. In addition, it
provides tools to check conditions and return informative error messages.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [ctb]
Maintainer: Nicolas Frerebeau
<nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between arkhe versions 1.0.0 dated 2022-10-28 and 1.1.0 dated 2023-01-18
DESCRIPTION | 10 +-- MD5 | 51 +++++++++-------- NAMESPACE | 15 ----- NEWS.md | 8 ++ R/AllGenerics.R | 27 +++------ R/arkhe-package.R | 7 -- R/assert.R | 49 ++++++++++++++++- R/deprecate.R | 111 --------------------------------------- R/reshape.R | 15 ++++- README.md | 49 ++++++++--------- build/partial.rdb |binary inst/CITATION | 8 +- inst/examples/ex-reshape.R | 2 man/arkhe-package.Rd | 2 man/check-attribute.Rd | 1 man/check-data.Rd | 5 - man/check-matrix.Rd | 1 man/check-numeric-comparison.Rd | 1 man/check-numeric-trend.Rd | 1 man/check-numeric.Rd | 1 man/check-type.Rd | 1 man/deprecate.Rd | 43 --------------- man/needs.Rd |only man/reshape.Rd | 9 ++- man/validate.Rd | 3 - tests/testthat/_snaps/reshape.md |only tests/testthat/test-assert.R | 4 + tests/testthat/test-reshape.R |only 28 files changed, 167 insertions(+), 257 deletions(-)