Title: Fit Zeta Distributions to Forensic Data
Description: Fits zeta distributions (discrete power laws) to data that arises
from forensic surveys of clothing on the presence of glass and paint in
various populations. The general method is described to some extent in
Coulson, S.A., Buckleton, J.S., Gummer, A.B., and Triggs, C.M. (2001)
<doi:10.1016/S1355-0306(01)71847-3>, although the implementation differs.
Author: James Curran [aut, cre]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between fitPS versions 0.2-2 dated 2023-01-20 and 0.2-3 dated 2023-01-26
DESCRIPTION | 8 - MD5 | 14 +- NAMESPACE | 4 R/fitDist.R | 240 ++++++++++++++++++++++++++------------------------ R/makePSData.R |only R/operators.psData.R |only R/print.psFit.R | 26 ++--- R/readData.R | 7 + man/equals-.psData.Rd |only man/makePSData.Rd |only 10 files changed, 163 insertions(+), 136 deletions(-)
Title: Dental Surface Complexity Measurement Tools
Description: Surface topography calculations of Dirichlet's normal energy,
relief index, surface slope, and orientation patch count for teeth using scans of
enamel caps.
Importantly, for the relief index and orientation patch count calculations to
work, the scanned tooth files must be oriented with the occlusal plane parallel
to the x and y axes, and perpendicular to the z axis. The files should also be
simplified, and smoothed in some other software prior to uploading into R.
Author: James D. Pampush [aut, cre, cph],
Paul E. Morse [aut, cph],
Alexander Q. Vining [aut, cph],
Edward Fuselier [aut, cph]
Maintainer: James D. Pampush <jdpampush@gmail.com>
Diff between molaR versions 5.2 dated 2022-12-19 and 5.3 dated 2023-01-26
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/ARC3d.R | 2 +- R/DNE3d.R | 2 +- R/DNE3dDiscard.R | 2 +- R/OPC3d.R | 2 +- R/RFI3d.R | 2 +- R/Slope3d.R | 2 +- R/plyPlaneCut.R | 6 +++--- inst/doc/molaR_vignette.html | 8 ++++---- 10 files changed, 25 insertions(+), 25 deletions(-)
Title: Likelihood-Based Inference for Time Series Extremes
Description: Performs likelihood-based inference for stationary time series
extremes. The general approach follows Fawcett and Walshaw (2012)
<doi:10.1002/env.2133>. Marginal extreme value inferences are adjusted for
cluster dependence in the data using the methodology in Chandler and Bate
(2007) <doi:10.1093/biomet/asm015>, producing an adjusted log-likelihood
for the model parameters. A log-likelihood for the extremal index is
produced using the K-gaps model of Suveges and Davison (2010)
<doi:10.1214/09-AOAS292>. These log-likelihoods are combined to make
inferences about extreme values. Both maximum likelihood and Bayesian
approaches are available.
Author: Paul J. Northrop [aut, cre, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between lite versions 1.0.0 dated 2022-04-08 and 1.1.0 dated 2023-01-26
lite-1.0.0/lite/R/lite.R |only lite-1.0.0/lite/R/returnLevel.R |only lite-1.0.0/lite/R/returnLevelMethods.R |only lite-1.0.0/lite/inst/doc/introduction-to-lite.R |only lite-1.0.0/lite/inst/doc/introduction-to-lite.Rmd |only lite-1.0.0/lite/inst/doc/introduction-to-lite.html |only lite-1.0.0/lite/man/lite.Rd |only lite-1.0.0/lite/vignettes/introduction-to-lite.Rmd |only lite-1.1.0/lite/DESCRIPTION | 15 lite-1.1.0/lite/MD5 | 72 + lite-1.1.0/lite/NAMESPACE | 12 lite-1.1.0/lite/NEWS.md |only lite-1.1.0/lite/R/blite.R |only lite-1.1.0/lite/R/bliteMethods.R |only lite-1.1.0/lite/R/blitePredictive.R |only lite-1.1.0/lite/R/estfun.R | 2 lite-1.1.0/lite/R/flite.R | 537 +++++++------ lite-1.1.0/lite/R/fliteMethods.R | 672 ++++++++++------- lite-1.1.0/lite/R/fliteReturnLevel.R |only lite-1.1.0/lite/R/fliteReturnLevelMethods.R |only lite-1.1.0/lite/R/generalisedPareto.R | 2 lite-1.1.0/lite/R/lite-internal.R | 643 ++++++++-------- lite-1.1.0/lite/R/lite-package.R |only lite-1.1.0/lite/R/logLikVector.R | 3 lite-1.1.0/lite/README.md | 84 +- lite-1.1.0/lite/build/partial.rdb |binary lite-1.1.0/lite/build/vignette.rds |binary lite-1.1.0/lite/inst/doc/lite-1-frequentist.R |only lite-1.1.0/lite/inst/doc/lite-1-frequentist.Rmd |only lite-1.1.0/lite/inst/doc/lite-1-frequentist.html |only lite-1.1.0/lite/inst/doc/lite-2-bayesian.R |only lite-1.1.0/lite/inst/doc/lite-2-bayesian.Rmd |only lite-1.1.0/lite/inst/doc/lite-2-bayesian.html |only lite-1.1.0/lite/man/blite.Rd |only lite-1.1.0/lite/man/bliteMethods.Rd |only lite-1.1.0/lite/man/estfun.Rd | 2 lite-1.1.0/lite/man/flite.Rd | 60 + lite-1.1.0/lite/man/fliteMethods.Rd | 101 +- lite-1.1.0/lite/man/lite-internal.Rd | 3 lite-1.1.0/lite/man/lite-package.Rd |only lite-1.1.0/lite/man/logLikVector.Rd | 3 lite-1.1.0/lite/man/predict.blite.Rd |only lite-1.1.0/lite/man/returnLevel.Rd | 8 lite-1.1.0/lite/man/returnLevelMethods.Rd | 2 lite-1.1.0/lite/tests/testthat/test-confint-blite.R |only lite-1.1.0/lite/tests/testthat/test-confint-flite.R |only lite-1.1.0/lite/tests/testthat/test-keq0-flite.R |only lite-1.1.0/lite/tests/testthat/test-methods-blite.R |only lite-1.1.0/lite/tests/testthat/test-predictive-blite.R |only lite-1.1.0/lite/tests/testthat/test-returnLevel.R | 2 lite-1.1.0/lite/vignettes/lite-1-frequentist.Rmd |only lite-1.1.0/lite/vignettes/lite-2-bayesian.Rmd |only lite-1.1.0/lite/vignettes/lite.bib | 126 +-- 53 files changed, 1374 insertions(+), 975 deletions(-)
Title: Serializable Representations
Description: String and binary representations of objects for several formats /
mime types.
Author: Philipp Angerer [aut, cre] ,
Thomas Kluyver [aut],
Jan Schulz [aut],
abielr [ctb],
Denilson Figueiredo de Sa [ctb],
Jim Hester [ctb],
karldw [ctb],
Dave Foster [ctb],
Carson Sievert [ctb]
Maintainer: Philipp Angerer <phil.angerer@gmail.com>
Diff between repr versions 1.1.5 dated 2023-01-12 and 1.1.6 dated 2023-01-26
DESCRIPTION | 8 MD5 | 15 R/options.r | 2 R/repr_matrix_df.r | 39 +- R/repr_vector.r | 3 R/zzz_onload.r |only tests/testthat/test_array_manipulation.r | 602 ++++++++++++++++--------------- tests/testthat/test_repr_vector.r | 2 tests/testthat/test_utils.r | 2 9 files changed, 352 insertions(+), 321 deletions(-)
Title: Tools for 'iNZight'
Description: Provides a collection of wrapper functions for common variable and dataset manipulation workflows primarily used by 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions. Additionally, many of the functions return the 'tidyverse' code used to obtain the result in an effort to bridge the gap between GUI and coding.
Author: Tom Elliott [aut, cre] ,
Daniel Barnett [aut],
Owen Jin [aut],
Yiwen He [aut],
Christoph Knopf [ctb],
Akshay Gupta [ctb],
Lushi Cai [ctb]
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightTools versions 1.12.3 dated 2022-08-22 and 1.13.0 dated 2023-01-26
iNZightTools-1.12.3/iNZightTools/R/import_survey.R |only iNZightTools-1.12.3/iNZightTools/man/as_survey.inzsvyspec.Rd |only iNZightTools-1.12.3/iNZightTools/man/as_survey_spec.Rd |only iNZightTools-1.12.3/iNZightTools/man/import_survey.Rd |only iNZightTools-1.12.3/iNZightTools/man/make_survey.Rd |only iNZightTools-1.12.3/iNZightTools/man/print.inzsvyspec.Rd |only iNZightTools-1.13.0/iNZightTools/DESCRIPTION | 22 iNZightTools-1.13.0/iNZightTools/MD5 | 61 +- iNZightTools-1.13.0/iNZightTools/NAMESPACE | 50 +- iNZightTools-1.13.0/iNZightTools/R/data_dict.R |only iNZightTools-1.13.0/iNZightTools/R/extfromdt.R | 17 iNZightTools-1.13.0/iNZightTools/R/helpers.R | 23 + iNZightTools-1.13.0/iNZightTools/R/import_data.R | 222 ++++++---- iNZightTools-1.13.0/iNZightTools/R/import_linked.R |only iNZightTools-1.13.0/iNZightTools/R/inzdf.R |only iNZightTools-1.13.0/iNZightTools/R/join_data.R | 6 iNZightTools-1.13.0/iNZightTools/R/modelfitting.R | 72 ++- iNZightTools-1.13.0/iNZightTools/R/tidycode.R | 16 iNZightTools-1.13.0/iNZightTools/R/validate_dataset.R | 10 iNZightTools-1.13.0/iNZightTools/R/zzz.R |only iNZightTools-1.13.0/iNZightTools/man/as_tibble.Rd |only iNZightTools-1.13.0/iNZightTools/man/dictionary.Rd |only iNZightTools-1.13.0/iNZightTools/man/filter.Rd |only iNZightTools-1.13.0/iNZightTools/man/fitModel.Rd | 3 iNZightTools-1.13.0/iNZightTools/man/inzdf.Rd |only iNZightTools-1.13.0/iNZightTools/man/load_linked.Rd |only iNZightTools-1.13.0/iNZightTools/man/select.Rd |only iNZightTools-1.13.0/iNZightTools/man/sheets.Rd | 2 iNZightTools-1.13.0/iNZightTools/man/vartypes.Rd |only iNZightTools-1.13.0/iNZightTools/tests/testthat/cas500_coded.csv |only iNZightTools-1.13.0/iNZightTools/tests/testthat/casdict.csv |only iNZightTools-1.13.0/iNZightTools/tests/testthat/invalid_names.csv |only iNZightTools-1.13.0/iNZightTools/tests/testthat/test_Extfromdt.R | 5 iNZightTools-1.13.0/iNZightTools/tests/testthat/test_dict.R |only iNZightTools-1.13.0/iNZightTools/tests/testthat/test_helpers.R | 55 ++ iNZightTools-1.13.0/iNZightTools/tests/testthat/test_inzdf.R |only iNZightTools-1.13.0/iNZightTools/tests/testthat/test_linked.R |only iNZightTools-1.13.0/iNZightTools/tests/testthat/test_model_fitting.R | 19 iNZightTools-1.13.0/iNZightTools/tests/testthat/test_smart_read.R | 61 ++ iNZightTools-1.13.0/iNZightTools/tests/testthat/test_standardize_vars.R | 4 iNZightTools-1.13.0/iNZightTools/tests/testthat/test_survey_design.R | 39 + iNZightTools-1.13.0/iNZightTools/tests/testthat/test_tidy_code.R | 11 iNZightTools-1.13.0/iNZightTools/tests/testthat/test_validation.R | 6 43 files changed, 505 insertions(+), 199 deletions(-)
Title: Tools for Exploring Regression Models with 'iNZight'
Description: Provides a suite of functions to use with regression models, including summaries, residual plots, and factor comparisons. Used as part of the Model Fitting module of 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions.
Author: Tom Elliott [aut, cre] ,
Simon Potter [aut],
David Banks [aut],
Danny Chang [ctb]
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightRegression versions 1.3.2 dated 2022-02-07 and 1.3.3 dated 2023-01-26
DESCRIPTION | 19 +++---- MD5 | 21 ++++---- R/inzplot_lm.R | 102 ++++++++++++++++++++++++++------------- inst |only man/compare_models.Rd | 6 +- man/factorComp.Rd | 6 +- man/figures/README-example-1.png |binary man/figures/README-example-2.png |binary man/figures/README-example-3.png |binary man/inzplot.lm.Rd | 5 + man/partialResPlot.Rd | 4 - tests/testthat/test_plots.R | 4 + 12 files changed, 104 insertions(+), 63 deletions(-)
More information about iNZightRegression at CRAN
Permanent link
Title: Two-Directional Simultaneous Inference for High-Dimensional
Models
Description: A general framework of two directional simultaneous inference
is provided for high-dimensional as well as the fixed dimensional models with manifest
variable or latent variable structure, such as high-dimensional mean models, high-
dimensional sparse regression models, and high-dimensional latent factors models.
It is making the simultaneous inference on a set of parameters from two directions,
one is testing whether the estimated zero parameters indeed are zero and the other is
testing whether there exists zero in the parameter set of non-zero. More details can be
referred to Wei Liu, et al. (2022) <doi:10.48550/arXiv.2012.11100>.
Author: Wei Liu [aut, cre],
Huazhen Lin [aut]
Maintainer: Wei Liu <weiliu@smail.swufe.edu.cn>
Diff between TOSI versions 0.2.0 dated 2023-01-24 and 0.3.0 dated 2023-01-26
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/bic.spfac.Rd | 4 ---- 3 files changed, 6 insertions(+), 10 deletions(-)
Title: Exploratory Data Analysis for the 'spatstat' Family
Description: Functionality for exploratory data analysis and nonparametric analysis of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Warick Brown [cph],
Achmad Choiruddin [ctb],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb, cph],
Julian Gi [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.explore versions 3.0-5 dated 2022-11-10 and 3.0-6 dated 2023-01-26
DESCRIPTION | 14 +++++++------- MD5 | 22 +++++++++++----------- NEWS | 6 ++++++ R/auc.R | 6 ++---- R/cdftest.R | 38 +++++++++++++------------------------- R/envelope.R | 32 ++++++++++++++++++++++++++------ inst/CITATION | 6 +++--- inst/doc/packagesizes.txt | 2 +- man/envelopeArray.Rd | 13 +++++++++++-- man/macros/defns.Rd | 2 ++ man/plot.fv.Rd | 13 +++++++++---- tests/testsEtoF.R | 5 ++++- 12 files changed, 95 insertions(+), 64 deletions(-)
More information about spatstat.explore at CRAN
Permanent link
Title: Exploratory Analysis of Genetic and Genomic Data
Description: Toolset for the exploration of genetic and genomic
data. Adegenet provides formal (S4) classes for storing and handling
various genetic data, including genetic markers with varying ploidy
and hierarchical population structure ('genind' class), alleles counts
by populations ('genpop'), and genome-wide SNP data ('genlight'). It
also implements original multivariate methods (DAPC, sPCA), graphics,
statistical tests, simulation tools, distance and similarity measures,
and several spatial methods. A range of both empirical and simulated
datasets is also provided to illustrate various methods.
Author: Thibaut Jombart [aut] ,
Zhian N. Kamvar [aut, cre] ,
Caitlin Collins [ctb],
Roman Lustrik [ctb],
Marie-Pauline Beugin [ctb],
Brian J. Knaus [ctb],
Peter Solymos [ctb],
Vladimir Mikryukov [ctb],
Klaus Schliep [ctb],
Tiago Maie [ctb],
Libor Morkovsky [ [...truncated...]
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between adegenet versions 2.1.9 dated 2023-01-12 and 2.1.10 dated 2023-01-26
ChangeLog | 6 ++++++ DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/snpbin.h | 2 -- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Version, Share, Deploy, and Monitor Models
Description: The goal of 'vetiver' is to provide fluent tooling to
version, share, deploy, and monitor a trained model. Functions handle
both recording and checking the model's input data prototype, and
predicting from a remote API endpoint. The 'vetiver' package is
extensible, with generics that can support many kinds of models.
Author: Julia Silge [cre, aut] ,
RStudio [cph, fnd]
Maintainer: Julia Silge <julia.silge@rstudio.com>
Diff between vetiver versions 0.1.8 dated 2022-09-29 and 0.2.0 dated 2023-01-26
vetiver-0.1.8/vetiver/R/ptype.R |only vetiver-0.1.8/vetiver/inst/doc/model-card.R |only vetiver-0.1.8/vetiver/inst/doc/model-card.Rmd |only vetiver-0.1.8/vetiver/inst/doc/model-card.html |only vetiver-0.1.8/vetiver/tests/testthat/helper-plumber.R |only vetiver-0.1.8/vetiver/tests/testthat/skeleton.html |only vetiver-0.1.8/vetiver/vignettes/model-card.Rmd |only vetiver-0.1.8/vetiver/vignettes/vetiver-templates.png |only vetiver-0.2.0/vetiver/DESCRIPTION | 31 vetiver-0.2.0/vetiver/MD5 | 161 - vetiver-0.2.0/vetiver/NAMESPACE | 8 vetiver-0.2.0/vetiver/NEWS.md | 24 vetiver-0.2.0/vetiver/R/api.R | 54 vetiver-0.2.0/vetiver/R/attach-pkgs.R | 6 vetiver-0.2.0/vetiver/R/caret.R | 2 vetiver-0.2.0/vetiver/R/dashboard.R | 2 vetiver-0.2.0/vetiver/R/endpoint.R | 2 vetiver-0.2.0/vetiver/R/handlers.R | 8 vetiver-0.2.0/vetiver/R/kproto.R |only vetiver-0.2.0/vetiver/R/lm.R | 8 vetiver-0.2.0/vetiver/R/mlr3.R | 2 vetiver-0.2.0/vetiver/R/open-api-spec.R | 38 vetiver-0.2.0/vetiver/R/pin-read-write.R | 4 vetiver-0.2.0/vetiver/R/prototype.R |only vetiver-0.2.0/vetiver/R/ranger.R | 4 vetiver-0.2.0/vetiver/R/renv.R |only vetiver-0.2.0/vetiver/R/rsconnect.R | 2 vetiver-0.2.0/vetiver/R/stacks.R | 2 vetiver-0.2.0/vetiver/R/tidymodels.R | 2 vetiver-0.2.0/vetiver/R/vetiver-model.R | 30 vetiver-0.2.0/vetiver/R/vetiver-package.R | 15 vetiver-0.2.0/vetiver/R/write-docker.R | 94 - vetiver-0.2.0/vetiver/R/write-plumber.R | 5 vetiver-0.2.0/vetiver/R/xgboost.R | 2 vetiver-0.2.0/vetiver/R/zzz.R |only vetiver-0.2.0/vetiver/README.md | 50 vetiver-0.2.0/vetiver/build/vignette.rds |binary vetiver-0.2.0/vetiver/inst/doc/vetiver.Rmd | 4 vetiver-0.2.0/vetiver/inst/doc/vetiver.html | 129 - vetiver-0.2.0/vetiver/inst/mtcars_ranger.R | 2 vetiver-0.2.0/vetiver/inst/rmarkdown/templates/vetiver_dashboard/skeleton/skeleton.Rmd | 3 vetiver-0.2.0/vetiver/inst/rmarkdown/templates/vetiver_model_card/skeleton/skeleton.Rmd | 11 vetiver-0.2.0/vetiver/inst/rmarkdown/templates/vetiver_model_card/skeleton/skeleton.html |only vetiver-0.2.0/vetiver/inst/vendor |only vetiver-0.2.0/vetiver/man/api_spec.Rd | 17 vetiver-0.2.0/vetiver/man/attach_pkgs.Rd | 6 vetiver-0.2.0/vetiver/man/handler_startup.Rd | 6 vetiver-0.2.0/vetiver/man/map_request_body.Rd | 4 vetiver-0.2.0/vetiver/man/reexports.Rd | 3 vetiver-0.2.0/vetiver/man/vetiver_api.Rd | 16 vetiver-0.2.0/vetiver/man/vetiver_create_description.Rd | 10 vetiver-0.2.0/vetiver/man/vetiver_create_meta.Rd | 7 vetiver-0.2.0/vetiver/man/vetiver_create_ptype.Rd | 25 vetiver-0.2.0/vetiver/man/vetiver_create_rsconnect_bundle.Rd | 4 vetiver-0.2.0/vetiver/man/vetiver_dashboard.Rd | 4 vetiver-0.2.0/vetiver/man/vetiver_deploy_rsconnect.Rd | 2 vetiver-0.2.0/vetiver/man/vetiver_model.Rd | 22 vetiver-0.2.0/vetiver/man/vetiver_pin_metrics.Rd | 2 vetiver-0.2.0/vetiver/man/vetiver_pin_write.Rd | 2 vetiver-0.2.0/vetiver/man/vetiver_prepare_docker.Rd |only vetiver-0.2.0/vetiver/man/vetiver_type_convert.Rd | 8 vetiver-0.2.0/vetiver/man/vetiver_write_docker.Rd | 16 vetiver-0.2.0/vetiver/man/vetiver_write_plumber.Rd | 7 vetiver-0.2.0/vetiver/tests/testthat/_snaps/api.md | 13 vetiver-0.2.0/vetiver/tests/testthat/_snaps/create-ptype.md | 2 vetiver-0.2.0/vetiver/tests/testthat/_snaps/gam.md | 2 vetiver-0.2.0/vetiver/tests/testthat/_snaps/glm.md | 2 vetiver-0.2.0/vetiver/tests/testthat/_snaps/kproto.md |only vetiver-0.2.0/vetiver/tests/testthat/_snaps/pin-read-write.md | 5 vetiver-0.2.0/vetiver/tests/testthat/_snaps/ranger.md | 6 vetiver-0.2.0/vetiver/tests/testthat/_snaps/write-docker.md | 70 vetiver-0.2.0/vetiver/tests/testthat/helper-redact.R | 11 vetiver-0.2.0/vetiver/tests/testthat/test-api.R | 238 +- vetiver-0.2.0/vetiver/tests/testthat/test-caret.R | 4 vetiver-0.2.0/vetiver/tests/testthat/test-create-ptype.R | 10 vetiver-0.2.0/vetiver/tests/testthat/test-gam.R | 6 vetiver-0.2.0/vetiver/tests/testthat/test-glm.R | 16 vetiver-0.2.0/vetiver/tests/testthat/test-kproto.R |only vetiver-0.2.0/vetiver/tests/testthat/test-mlr3.R | 8 vetiver-0.2.0/vetiver/tests/testthat/test-monitor.R | 2 vetiver-0.2.0/vetiver/tests/testthat/test-pin-read-write.R | 21 vetiver-0.2.0/vetiver/tests/testthat/test-predict.R | 19 vetiver-0.2.0/vetiver/tests/testthat/test-ranger.R | 8 vetiver-0.2.0/vetiver/tests/testthat/test-stacks.R | 6 vetiver-0.2.0/vetiver/tests/testthat/test-tidymodels.R | 4 vetiver-0.2.0/vetiver/tests/testthat/test-write-docker.R | 38 vetiver-0.2.0/vetiver/tests/testthat/test-write-plumber.R | 2 vetiver-0.2.0/vetiver/tests/testthat/test-xgboost.R | 4 vetiver-0.2.0/vetiver/tests/testthat/vetiver_renv.lock | 918 ++++++---- vetiver-0.2.0/vetiver/vignettes/vetiver.Rmd | 4 90 files changed, 1491 insertions(+), 794 deletions(-)
Title: Quantify Rhythmicity and Differential Rhythmicity in Genomic
Data
Description: Fit linear models based on periodic splines, moderate model
coefficients using multivariate adaptive shrinkage, then compute properties of
the moderated curves.
Author: Jake Hughey [aut, cre],
Dora Obodo [aut],
Elliot Outland [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>
Diff between limorhyde2 versions 0.0.7 dated 2022-03-08 and 0.1.0 dated 2023-01-26
DESCRIPTION | 8 MD5 | 92 ++-- NEWS.md | 22 + R/examples.R | 1 R/get_expected.R | 9 R/get_model.R | 38 +- R/get_model_utils.R | 18 R/get_stats.R | 12 R/get_stats_utils.R | 14 build/vignette.rds |binary inst/doc/differential-rhythmicity.R | 4 inst/doc/differential-rhythmicity.Rmd | 4 inst/doc/differential-rhythmicity.html | 456 +++++++++++++----------- inst/doc/rhythmicity.R | 2 inst/doc/rhythmicity.Rmd | 2 inst/doc/rhythmicity.html | 353 ++++++++++-------- inst/doc/rnaseq.R | 4 inst/doc/rnaseq.Rmd | 4 inst/doc/rnaseq.html | 148 ++++--- inst/doc/uncertainty.R | 6 inst/doc/uncertainty.Rmd | 6 inst/doc/uncertainty.html | 408 ++++++++++++--------- man/getModelFit.Rd | 17 tests/testthat/data/diff_rhy_stats_post_2.qs |binary tests/testthat/data/diff_rhy_stats_samps12_2.qs |binary tests/testthat/data/diff_rhy_stats_samps32_2.qs |binary tests/testthat/data/expected_meas_2.qs |binary tests/testthat/data/expected_meas_3.qs |binary tests/testthat/data/meas_ints_2.qs |binary tests/testthat/data/model_fit_1.qs |binary tests/testthat/data/model_fit_2.qs |binary tests/testthat/data/model_fit_3.qs |binary tests/testthat/data/model_fit_4.qs |binary tests/testthat/data/posterior_fit_2.qs |binary tests/testthat/data/posterior_samples_2.qs |binary tests/testthat/data/rhy_stats_post_2.qs |binary tests/testthat/data/rhy_stats_raw_1.qs |binary tests/testthat/data/rhy_stats_samps_2.qs |binary tests/testthat/data/stats_ints_diff_2.qs |binary tests/testthat/data/stats_ints_rhy_2.qs |binary tests/testthat/test_exported.R | 20 - tests/testthat/test_model_utils.R | 18 tests/testthat/test_stats_utils.R | 10 vignettes/differential-rhythmicity.Rmd | 4 vignettes/rhythmicity.Rmd | 2 vignettes/rnaseq.Rmd | 4 vignettes/uncertainty.Rmd | 6 47 files changed, 947 insertions(+), 745 deletions(-)
Title: Simple Peak Alignment for Gas-Chromatography Data
Description: Aligns peak based on peak retention times and matches homologous peaks
across samples. The underlying alignment procedure comprises three sequential steps.
(1) Full alignment of samples by linear transformation of retention times to
maximise similarity among homologous peaks (2) Partial alignment of peaks within
a user-defined retention time window to cluster homologous peaks (3) Merging rows
that are likely representing homologous substances (i.e. no sample shows peaks in
both rows and the rows have similar retention time means). The algorithm is described in detail
in Ottensmann et al., 2018 <doi:10.1371/journal.pone.0198311>.
Author: Meinolf Ottensmann [aut, cre] ,
Martin Stoffel [aut],
Hazel J. Nichols [aut],
Joseph I. Hoffman [aut]
Maintainer: Meinolf Ottensmann <meinolf.ottensmann@web.de>
Diff between GCalignR versions 1.0.3 dated 2020-08-26 and 1.0.5 dated 2023-01-26
DESCRIPTION | 12 MD5 | 40 NEWS.md | 16 R/GC_Heatmap.R | 147 - R/align_chromatograms.R | 24 R/align_peaks_fast.R |only R/blank_substraction.R |only R/check_input.R | 16 R/choose_optimal_reference.R | 9 R/draw_chromatogram.R | 23 R/merge_redundant_rows.R | 2 R/norm_peaks.R | 2 R/remove_blanks.R | 2 R/remove_singletons.R | 2 README.md | 88 build/vignette.rds |binary inst/doc/GCalignR_How_does_the_Algorithm_work.html | 525 +++-- inst/doc/GCalignR_step_by_step.html | 2140 ++++++++++++++++++--- man/align_peaks_fast.Rd |only man/blank_substraction.Rd |only man/choose_optimal_reference.Rd | 2 man/draw_chromatogram.Rd | 9 tests/testthat/test-choose_optimal_reference.R | 4 23 files changed, 2544 insertions(+), 519 deletions(-)
Title: Feature Selection for 'mlr3'
Description: Feature selection package of the 'mlr3' ecosystem. It selects
the optimal feature set for any 'mlr3' learner. The package works with
several optimization algorithms e.g. Random Search, Recursive Feature
Elimination, and Genetic Search. Moreover, it can automatically
optimize learners and estimate the performance of optimized feature
sets with nested resampling.
Author: Marc Becker [aut, cre] ,
Patrick Schratz [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 0.9.0 dated 2022-12-21 and 0.9.1 dated 2023-01-26
DESCRIPTION | 11 ++---- MD5 | 34 ++++++++++---------- NAMESPACE | 2 - NEWS.md | 5 ++ R/FSelectorRFE.R | 13 +------ R/FSelectorShadowVariableSearch.R | 2 - R/ObjectiveFSelect.R | 10 ++--- R/zzz.R | 3 - README.md | 13 ------- inst/testthat/helper_misc.R | 12 +++---- tests/testthat/helper.R | 1 tests/testthat/test_ArchiveFSelect.R | 14 ++++---- tests/testthat/test_AutoFSelector.R | 10 ++++- tests/testthat/test_FSelectInstanceSingleCrit.R | 12 +++---- tests/testthat/test_FSelectorExhaustiveSearch.R | 4 +- tests/testthat/test_FSelectorSequential.R | 4 +- tests/testthat/test_FSelectorShadowVariableSearch.R | 13 ++----- tests/testthat/test_ObjectiveFSelect.R | 13 +++---- 18 files changed, 78 insertions(+), 98 deletions(-)
Title: Knowledge Space Theory Input/Output
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstIO' package
provides basic functionalities to read and write KST data from/to
files to be used together with the 'kst', 'kstMatrix', 'pks' or
'DAKS' packages.
Author: Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstIO versions 0.3-0 dated 2019-04-11 and 0.4-0 dated 2023-01-26
Changelog | 5 +++ DESCRIPTION | 8 ++--- MD5 | 54 +++++++++++++++++++++------------------- NAMESPACE | 3 ++ R/read_surmisefunction.R |only R/write_kbase.R | 58 ++++++++++++++++++++++--------------------- R/write_kdata.R | 44 +++++++++++++++++--------------- R/write_kspace.R | 52 ++++++++++++++++++++------------------ R/write_kstructure.R | 52 ++++++++++++++++++++------------------ R/write_surmisefunction.R |only R/write_surmiserelation.R | 8 ++++- build/vignette.rds |binary inst/doc/kstIO.R | 3 -- inst/doc/kstIO.Rnw | 17 ++++++++---- inst/doc/kstIO.pdf |binary man/kstIO-package.Rd | 37 ++++++++++++++++++++------- man/read_kbase.Rd | 7 +++-- man/read_kdata.Rd | 11 +++++--- man/read_kfamset.Rd | 7 +++-- man/read_kspace.Rd | 7 +++-- man/read_kstructure.Rd | 7 +++-- man/read_surmisefunction.Rd |only man/read_surmiserelation.Rd | 7 +++-- man/write_kbase.Rd | 9 ++++-- man/write_kdata.Rd | 11 +++++--- man/write_kspace.Rd | 9 ++++-- man/write_kstructure.Rd | 7 +++-- man/write_surmisefunction.Rd |only man/write_surmiserelation.Rd | 7 +++-- vignettes/kstIO.Rnw | 17 ++++++++---- 30 files changed, 272 insertions(+), 175 deletions(-)
Title: Tools for 2D and 3D Plots of Single and Multi-Objective
Linear/Integer Programming Models
Description: Make 2D and 3D plots of linear programming (LP),
integer linear programming (ILP), or mixed integer linear programming (MILP) models
with up to three objectives. Plots of both the solution and criterion space are possible.
For instance the non-dominated (Pareto) set for bi-objective LP/ILP/MILP programming models
(see vignettes for an overview). The package also contains an function for checking if a point
is inside the convex hull.
Author: Lars Relund Nielsen [aut, cre]
Maintainer: Lars Relund Nielsen <lars@relund.dk>
Diff between gMOIP versions 1.4.7 dated 2021-08-23 and 1.4.8 dated 2023-01-26
DESCRIPTION | 9 MD5 | 105 NEWS.md | 9 R/functions.R | 2 R/hull.R | 38 R/ndset.R | 28 R/package_doc.R | 2 R/plot.R | 195 build/vignette.rds |binary inst/WORDLIST |only inst/doc/bi-objective_2x.html | 392 + inst/doc/bi-objective_3x_ex1.html | 9092 +++++++++++++++++++++++++++++++++++++- inst/doc/intro.html | 410 + inst/doc/polytope_2d.html | 367 + inst/doc/polytope_3d_ex1.html | 336 + inst/doc/tri-objective.Rmd | 2 inst/doc/tri-objective.html | 9062 +++++++++++++++++++++++++++++++++++++ inst/examples/ex_polytope.R | 2 man/addNDSet.Rd | 8 man/addNDSet2D.Rd | 5 man/addRays.Rd | 4 man/convexHull.Rd | 3 man/criterionPoints.Rd | 9 man/dot-getRanges.Rd | 1 man/dot-sizeM.Rd | 1 man/figures/README-3d.gif |binary man/figures/README-ilp-1.png |binary man/figures/README-lp-1.png |binary man/figures/README-milp-1.png |binary man/finalize3D.Rd | 2 man/gMOIP-package.Rd | 9 man/gMOIPTheme.Rd | 18 man/getTexture.Rd | 8 man/hullSegment.Rd | 14 man/inHull.Rd | 4 man/ini3D.Rd | 2 man/loadView.Rd | 6 man/plotCones2D.Rd | 4 man/plotCones3D.Rd | 4 man/plotCriterion2D.Rd | 8 man/plotHull2D.Rd | 8 man/plotHull3D.Rd | 6 man/plotMTeX3D.Rd | 2 man/plotNDSet2D.Rd | 8 man/plotPlane3D.Rd | 6 man/plotPoints3D.Rd | 2 man/plotPolygon3D.Rd | 18 man/plotPolytope.Rd | 33 man/plotPolytope2D.Rd | 19 man/plotPolytope3D.Rd | 29 man/plotRectangle3D.Rd | 4 man/plotTeX3D.Rd | 2 man/texToPng.Rd | 2 vignettes/tri-objective.Rmd | 2 54 files changed, 19490 insertions(+), 812 deletions(-)
Title: Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Description: Operations on triangular meshes based on 'VCGLIB'. This package
integrates nicely with the R-package 'rgl' to render the meshes processed by
'Rvcg'. The Visualization and Computer Graphics Library (VCG for short) is
an open source portable C++ templated library for manipulation, processing
and displaying with OpenGL of triangle and tetrahedral meshes. The library,
composed by more than 100k lines of code, is released under the GPL license,
and it is the base of most of the software tools of the Visual Computing Lab of
the Italian National Research Council Institute ISTI <http://vcg.isti.cnr.it>,
like 'metro' and 'MeshLab'. The 'VCGLIB' source is pulled from trunk
<https://github.com/cnr-isti-vclab/vcglib> and patched to work with options
determined by the configure script as well as to work with the header files
included by 'RcppEigen'.
Author: Stefan Schlager [aut, cre, cph],
Girinon Francois [ctb],
Tim Schaefer [ctb]
Maintainer: Stefan Schlager <zarquon42@gmail.com>
Diff between Rvcg versions 0.22 dated 2022-10-31 and 0.22.1 dated 2023-01-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/Rvcg-package.R | 4 ++-- man/Rvcg-package.Rd | 4 ++-- src/vcglib/wrap/io_trimesh/import_obj.h | 2 +- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Manage Cached Files
Description: Suite of tools for managing cached files, targeting
use in other R packages. Uses 'rappdirs' for cross-platform paths.
Provides utilities to manage cache directories, including targeting
files by path or by key; cached directories can be compressed and
uncompressed easily to save disk space.
Author: Scott Chamberlain [aut] ,
Tamas Stirling [ctb, cre]
Maintainer: Tamas Stirling <stirling.tamas@gmail.com>
Diff between hoardr versions 0.5.2 dated 2018-12-01 and 0.5.3 dated 2023-01-26
DESCRIPTION | 26 +-- LICENSE | 2 MD5 | 16 +- NEWS.md | 27 ++- README.md | 79 ++++------ build/vignette.rds |binary inst/doc/hoardr_vignette.R | 22 +- inst/doc/hoardr_vignette.html | 330 ++++++++++++++++++++++++------------------ man/hoard.Rd | 2 9 files changed, 290 insertions(+), 214 deletions(-)
Title: Multivariate Adaptive Regression Splines
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression
Splines" <doi:10.1214/aos/1176347963>.
(The term "MARS" is trademarked and thus not used in
the name of the package.)
Author: Stephen Milborrow. Derived from mda:mars by Trevor Hastie and
Rob Tibshirani. Uses Alan Miller's Fortran utilities
with Thomas Lumley's leaps wrapper.
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between earth versions 5.3.1 dated 2021-07-20 and 5.3.2 dated 2023-01-26
earth-5.3.1/earth/NEWS |only earth-5.3.2/earth/DESCRIPTION | 6 earth-5.3.2/earth/MD5 | 120 +++++----- earth-5.3.2/earth/NEWS.md |only earth-5.3.2/earth/R/as.char.R | 8 earth-5.3.2/earth/R/earth.fit.R | 6 earth-5.3.2/earth/R/earth.regress.R | 3 earth-5.3.2/earth/build/partial.rdb |binary earth-5.3.2/earth/inst/slowtests/earth.times.bat | 2 earth-5.3.2/earth/inst/slowtests/make.bat | 62 ++--- earth-5.3.2/earth/inst/slowtests/makeclean.bat | 6 earth-5.3.2/earth/inst/slowtests/test.allowedfunc.bat | 2 earth-5.3.2/earth/inst/slowtests/test.big.Rout.save | 4 earth-5.3.2/earth/inst/slowtests/test.big.bat | 2 earth-5.3.2/earth/inst/slowtests/test.bpairs.bat | 2 earth-5.3.2/earth/inst/slowtests/test.cv.R | 2 earth-5.3.2/earth/inst/slowtests/test.cv.Rout.save | 2 earth-5.3.2/earth/inst/slowtests/test.cv.bat | 2 earth-5.3.2/earth/inst/slowtests/test.earthc.clang.bat | 48 ++-- earth-5.3.2/earth/inst/slowtests/test.earthc.gcc.bat | 36 +-- earth-5.3.2/earth/inst/slowtests/test.earthc.msc.bat | 26 +- earth-5.3.2/earth/inst/slowtests/test.earthc.msc.mak | 6 earth-5.3.2/earth/inst/slowtests/test.earthc.out.save | 4 earth-5.3.2/earth/inst/slowtests/test.earthmain.clang.bat | 48 ++-- earth-5.3.2/earth/inst/slowtests/test.earthmain.gcc.bat | 36 +-- earth-5.3.2/earth/inst/slowtests/test.earthmain.gcc64.bat | 34 +- earth-5.3.2/earth/inst/slowtests/test.earthmain.msc.bat | 42 +-- earth-5.3.2/earth/inst/slowtests/test.emma.Rout.save | 2 earth-5.3.2/earth/inst/slowtests/test.emma.bat | 2 earth-5.3.2/earth/inst/slowtests/test.expand.bpairs.bat | 2 earth-5.3.2/earth/inst/slowtests/test.full.R | 20 + earth-5.3.2/earth/inst/slowtests/test.full.Rout.save | 84 ++++--- earth-5.3.2/earth/inst/slowtests/test.full.bat | 2 earth-5.3.2/earth/inst/slowtests/test.glm.bat | 2 earth-5.3.2/earth/inst/slowtests/test.incorrect.bat | 2 earth-5.3.2/earth/inst/slowtests/test.mem.bat | 2 earth-5.3.2/earth/inst/slowtests/test.mods.Rout.save | 2 earth-5.3.2/earth/inst/slowtests/test.mods.bat | 2 earth-5.3.2/earth/inst/slowtests/test.multresp.bat | 2 earth-5.3.2/earth/inst/slowtests/test.numstab-mfpmath-387.Rout.save | 2 earth-5.3.2/earth/inst/slowtests/test.numstab.Rout.save | 4 earth-5.3.2/earth/inst/slowtests/test.numstab.bat | 2 earth-5.3.2/earth/inst/slowtests/test.offset.bat | 2 earth-5.3.2/earth/inst/slowtests/test.ordinal.bat | 2 earth-5.3.2/earth/inst/slowtests/test.plotd.Rout.save | 2 earth-5.3.2/earth/inst/slowtests/test.plotd.bat | 2 earth-5.3.2/earth/inst/slowtests/test.pmethod.cv.bat | 2 earth-5.3.2/earth/inst/slowtests/test.varmod.Rout.save | 2 earth-5.3.2/earth/inst/slowtests/test.varmod.bat | 2 earth-5.3.2/earth/inst/slowtests/test.varmod.mgcv.Rout.save | 2 earth-5.3.2/earth/inst/slowtests/test.varmod.mgcv.bat | 2 earth-5.3.2/earth/inst/slowtests/test.weights.R | 4 earth-5.3.2/earth/inst/slowtests/test.weights.Rout.save | 6 earth-5.3.2/earth/inst/slowtests/test.weights.bat | 2 earth-5.3.2/earth/man/earth.Rd | 6 earth-5.3.2/earth/man/format.earth.Rd | 36 +-- earth-5.3.2/earth/man/ozone1.Rd | 4 earth-5.3.2/earth/man/plotd.Rd | 2 earth-5.3.2/earth/src/allowed.c | 8 earth-5.3.2/earth/src/earth.c | 79 +++--- earth-5.3.2/earth/src/earth.h | 3 earth-5.3.2/earth/src/rentries.c | 3 62 files changed, 434 insertions(+), 378 deletions(-)
Title: Zhang + Yue-Pilon Trends Package
Description: An efficient implementation of the slope method described by Sen (1968) <doi:10.1080/01621459.1968.10480934> plus implementation of prewhitening approaches to determining trends in climate data described by Zhang, Vincent, Hogg, and Niitsoo (2000) <doi:10.1080/07055900.2000.9649654> and Yue, Pilon, Phinney, and Cavadias (2002) <doi:10.1002/hyp.1095>.
Author: David Bronaugh [aut],
Arelia Schoeneberg [aut],
Lee Zeman [cre]
Maintainer: Lee Zeman <lzeman@uvic.ca>
Diff between zyp versions 0.10-1.1 dated 2019-01-25 and 0.11 dated 2023-01-26
DESCRIPTION | 17 +++++---- MD5 | 12 +++--- NAMESPACE | 24 ++++++------ R/zyp.R | 89 ++++++++++++++++++++++++++---------------------- man/zyp.Rd | 34 ++++++++++++++---- man/zyp.trend.csv.Rd | 24 +++++++----- man/zyp.trend.vector.Rd | 18 +++++---- 7 files changed, 127 insertions(+), 91 deletions(-)
Title: Derivatives of the First-Passage Time Density and Cumulative
Distribution Function, and Random Sampling from the (Truncated)
First-Passage Time Distribution
Description: First, we provide functions to calculate the partial derivative of the first-passage time diffusion probability density function (PDF) and cumulative
distribution function (CDF) with respect to the first-passage time t (only for PDF), the upper barrier a, the drift rate v, the relative starting point w, the
non-decision time t0, the inter-trial variability of the drift rate sv, the inter-trial variability of the rel. starting point sw, and the inter-trial variability
of the non-decision time st0. In addition the PDF and CDF themselves are also provided. Most calculations are done on the logarithmic scale to make it more stable.
Since the PDF, CDF, and their derivatives are represented as infinite series, we give the user the option to control the approximation errors with the argument
'precision'. For the numerical integration we used the C library cubature by Johnson, S. G. (2005-2013) <https://github.com/stevengj/cubature>. Numerical integration is
required whenever sv, sw, and [...truncated...]
Author: Raphael Hartmann [aut, cre],
Karl C. Klauer [cph, aut, ctb, ths],
Steven G. Johnson [ctb],
Jean M. Linhart [ctb],
Brian Gough [ctb],
Gerard Jungman [ctb],
Rudolf Schuerer [ctb],
Przemyslaw Sliwa [ctb],
Jason H. Stover [ctb]
Maintainer: Raphael Hartmann <raphael.hartmann@protonmail.com>
Diff between WienR versions 0.3-7 dated 2022-10-28 and 0.3-8 dated 2023-01-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/sampWiener.R | 2 +- build/partial.rdb |binary 4 files changed, 7 insertions(+), 7 deletions(-)
Title: Nonlinear Time Series Models with Regime Switching
Description: Implements nonlinear autoregressive (AR) time series models. For univariate series, a non-parametric approach is available through additive nonlinear AR. Parametric modeling and testing for regime switching dynamics is available when the transition is either direct (TAR: threshold AR) or smooth (STAR: smooth transition AR, LSTAR). For multivariate series, one can estimate a range of TVAR or threshold cointegration TVECM models with two or three regimes. Tests can be conducted for TVAR as well as for TVECM (Hansen and Seo 2002 and Seo 2006).
Author: Antonio Fabio Di Narzo [aut] ,
Jose Luis Aznarte [ctb] ,
Matthieu Stigler [aut, cre]
Maintainer: Matthieu Stigler <Matthieu.Stigler@gmail.com>
Diff between tsDyn versions 11.0.2 dated 2022-03-09 and 11.0.4 dated 2023-01-26
tsDyn-11.0.2/tsDyn/tests/irf_nlar_TEST.Rout.save |only tsDyn-11.0.4/tsDyn/DESCRIPTION | 12 ++-- tsDyn-11.0.4/tsDyn/MD5 | 43 ++++++++--------- tsDyn-11.0.4/tsDyn/NEWS.md | 9 +++ tsDyn-11.0.4/tsDyn/R/GIRF.R | 8 +-- tsDyn-11.0.4/tsDyn/R/autotriples.rgl.R | 6 +- tsDyn-11.0.4/tsDyn/R/lineVar.R | 2 tsDyn-11.0.4/tsDyn/R/predict_rolling.R | 12 ++-- tsDyn-11.0.4/tsDyn/R/setar.R | 45 +++++++++--------- tsDyn-11.0.4/tsDyn/build/vignette.rds |binary tsDyn-11.0.4/tsDyn/inst/CITATION | 21 +++++--- tsDyn-11.0.4/tsDyn/inst/doc/ThCointOverview.pdf |binary tsDyn-11.0.4/tsDyn/inst/doc/tsDyn.pdf |binary tsDyn-11.0.4/tsDyn/man/GIRF.Rd | 8 +-- tsDyn-11.0.4/tsDyn/man/predict_rolling.Rd | 12 ++-- tsDyn-11.0.4/tsDyn/man/setar.Rd | 2 tsDyn-11.0.4/tsDyn/tests/compare_tsDyn_vars.R | 4 - tsDyn-11.0.4/tsDyn/tests/compare_tsDyn_vars.Rout.save | 10 ++-- tsDyn-11.0.4/tsDyn/tests/irf_nlVAR_TEST.R | 8 +-- tsDyn-11.0.4/tsDyn/tests/irf_nlVAR_TEST.Rout.save | 8 +-- tsDyn-11.0.4/tsDyn/tests/irf_nlar_TEST.R | 4 + tsDyn-11.0.4/tsDyn/tests/nlar-methods_TEST.R | 7 ++ tsDyn-11.0.4/tsDyn/tests/nlar-methods_TEST.Rout.save | 34 ++++++++++--- 23 files changed, 146 insertions(+), 109 deletions(-)
Title: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL
Format and BGEN Format) into R
Description: Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.
Author: Xiaowei Zhan [aut, cre],
Dajiang Liu [aut],
Attractive Chaos [cph] . We removed standard IO related functions, e.g. printf,
fprintf ; also changed its un-safe pointer arithmetics.),
Broad Institute / Massachusetts Institute of Technology [cph],
Genom [...truncated...]
Maintainer: Xiaowei Zhan <zhanxw@gmail.com>
Diff between seqminer versions 8.5 dated 2022-11-15 and 8.6 dated 2023-01-26
ChangeLog | 8 ++++++++ DESCRIPTION | 10 +++++----- MD5 | 46 +++++++++++++++++++++++----------------------- README.md | 2 +- src/BCFReader.cpp | 4 ++-- src/BGenFile.cpp | 2 +- src/Exception.h | 4 ++-- src/FileIO.cpp | 2 +- src/FileIO.h | 48 ++++++++++++++++++++++++++++++++++++++---------- src/GeneAnnotation.h | 2 +- src/MmapFile.cpp | 4 ++-- src/MmapFile.h | 4 ++-- src/OrderedMap.h | 2 +- src/SimpleMatrix.h | 2 +- src/StringTemplate.h | 2 +- src/StringUtil.h | 6 +++--- src/TabixData.h | 2 +- src/TimeUtil.h | 2 +- src/TypeConversion.h | 2 +- src/Utils.h | 2 +- src/VCFInputFile.cpp | 8 ++++++-- src/bgen2genoLoader.cpp | 4 ++-- src/knetfile.c | 20 ++++++++++---------- src/rvMetaLoader.cpp | 2 +- 24 files changed, 115 insertions(+), 75 deletions(-)
Title: Helper Tools for Managing Data, Dates, Missing Values, and Text
Description: An assortment of helper functions for managing data (e.g.,
rotating values in matrices by a user-defined angle, switching from
row- to column-indexing), dates (e.g., intuiting year from messy date
strings), handling missing values (e.g., removing elements/rows across
multiple vectors or matrices if any have an NA), and text (e.g.,
flushing reports to the console in real-time).
Author: Adam B. Smith [cre, aut]
Maintainer: Adam B. Smith <adam.smith@mobot.org>
Diff between omnibus versions 1.1.2 dated 2022-02-15 and 1.1.3 dated 2023-01-26
DESCRIPTION | 10 +- MD5 | 92 ++++++++++--------- NAMESPACE | 88 +++++++++--------- NEWS.md | 79 +++------------- R/insert.r |only R/insertCol.r | 61 ++++++------- R/omnibus.r | 2 R/pairDist.r | 16 ++- R/renumSeq.r |only R/rowColIndexing.r | 2 README.md | 23 ++++ man/bracket.Rd | 96 ++++++++++---------- man/capIt.Rd | 48 +++++----- man/combineDf.Rd | 112 ++++++++++++------------ man/corner.Rd | 64 ++++++------- man/countDecDigits.Rd | 40 ++++---- man/cull.Rd | 52 +++++------ man/dirCreate.Rd | 40 ++++---- man/domLeap.Rd | 40 ++++---- man/domNonLeap.Rd | 40 ++++---- man/doyLeap.Rd | 40 ++++---- man/doyNonLeap.Rd | 40 ++++---- man/insert.Rd |only man/insertCol.Rd | 104 +++++++++++----------- man/isLeapYear.Rd | 42 ++++----- man/isTRUENA.Rd | 82 ++++++++--------- man/listFiles.Rd | 54 +++++------ man/longRun.Rd | 64 ++++++------- man/maxRuns.Rd | 100 ++++++++++----------- man/memUse.Rd | 76 ++++++++-------- man/mergeLists.Rd | 54 +++++------ man/mirror.Rd | 74 +++++++-------- man/mmode.Rd | 50 +++++----- man/naCompare.Rd | 160 +++++++++++++++++----------------- man/naOmitMulti.Rd | 52 +++++------ man/naRows.Rd | 50 +++++----- man/omnibus.Rd | 162 +++++++++++++++++----------------- man/pairDist.Rd | 61 ++++++------- man/prefix.Rd | 52 +++++------ man/quadArea.Rd | 56 ++++++------ man/renumSeq.Rd |only man/rotateMatrix.Rd | 62 ++++++------- man/roundTo.Rd | 60 ++++++------ man/roundedSigDigits.Rd | 194 ++++++++++++++++++++--------------------- man/rowColIndexing.Rd | 76 ++++++++-------- man/say.Rd | 98 ++++++++++----------- man/stretchMinMax.Rd | 98 ++++++++++----------- man/which.pmax.Rd | 90 +++++++++---------- man/yearFromDate.Rd | 224 ++++++++++++++++++++++++------------------------ 49 files changed, 1585 insertions(+), 1595 deletions(-)
Title: Cross-Validation for Model Selection
Description: Cross-validate one or multiple regression and classification models
and get relevant evaluation metrics in a tidy format. Validate the
best model on a test set and compare it to a baseline evaluation.
Alternatively, evaluate predictions from an external model. Currently
supports regression and classification (binary and multiclass).
Described in chp. 5 of Jeyaraman, B. P., Olsen, L. R.,
& Wambugu M. (2019, ISBN: 9781838550134).
Author: Ludvig Renbo Olsen [aut, cre],
Hugh Benjamin Zachariae [aut],
Indrajeet Patil [ctb] ,
Daniel Luedecke [ctb]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>
Diff between cvms versions 1.3.8 dated 2023-01-05 and 1.3.9 dated 2023-01-26
DESCRIPTION | 6 - MD5 | 22 ++-- NEWS.md | 4 R/helpers.R | 16 +++ build/cvms.pdf |binary inst/doc/Creating_a_confusion_matrix.html | 4 inst/doc/available_metrics.html | 4 inst/doc/cross_validating_custom_functions.html | 8 - inst/doc/evaluate_by_id.html | 4 inst/doc/picking_the_number_of_folds_for_cross-validation.html | 4 tests/testthat/test_cross_validate_fn.R | 12 +- tests/testthat/test_validate_fn.R | 51 ++++------ 12 files changed, 77 insertions(+), 58 deletions(-)
Title: Software Citation Tools
Description: A collection of functions to extract citation information from 'R' packages and to deal with files in 'citation file format' (<https://citation-file-format.github.io/>), extending the functionality already provided by the citation() function in the 'utils' package.
Author: Jan Philipp Dietrich [aut, cre],
Waldir Leoncio [aut]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between citation versions 0.6.3 dated 2022-08-18 and 0.6.4 dated 2023-01-26
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 - R/cff2bibentry.R | 12 ++++++------ README.md | 10 +++++----- build/partial.rdb |binary 6 files changed, 21 insertions(+), 22 deletions(-)
Title: Advanced Tools for Building the Next Generation of 'Shiny'
Applications and Dashboards
Description: Responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts and style sheets are based on 'jQuery' <https://jquery.com/> and 'Bootstrap' <https://getbootstrap.com/>.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between nextGenShinyApps versions 1.5 dated 2022-07-21 and 1.6 dated 2023-01-26
DESCRIPTION | 16 - MD5 | 44 ++-- NAMESPACE | 2 NEWS.md | 21 +- R/button.R | 8 R/cards.R | 59 ++++++ R/form.R | 4 R/tabs.R | 2 README.md | 70 ++++++- inst/core/nextgenshinyapps.css | 2 inst/core/nextgenshinyapps.js | 97 ---------- inst/doc/introduction_to_nextgenshinyapps.R | 16 + inst/doc/introduction_to_nextgenshinyapps.Rmd | 16 + inst/doc/introduction_to_nextgenshinyapps.html | 233 +++++++++++++------------ inst/exp/example.Button.R | 4 man/actionButton.Rd | 3 man/altPanel.Rd |only man/checkboxInput.Rd | 2 man/load.example.Rd | 4 man/mainPanel.Rd |only man/masterButton.Rd | 6 man/submitButton.Rd | 6 man/tabsetPanel.Rd | 2 vignettes/introduction_to_nextgenshinyapps.Rmd | 16 + 24 files changed, 359 insertions(+), 274 deletions(-)
More information about nextGenShinyApps at CRAN
Permanent link
Title: Italian Fiscal Code ('Codice Fiscale') Utilities
Description: Provides utility functions to deal with Italian fiscal
code ('codice fiscale').
Author: Luca Braglia [aut, cre]
Maintainer: Luca Braglia <lbraglia@gmail.com>
Diff between ifctools versions 0.3.4 dated 2021-06-25 and 0.3.5 dated 2023-01-26
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/reg_guess_fc_worker.c | 6 ++++-- 3 files changed, 10 insertions(+), 8 deletions(-)
More information about scanstatistics at CRAN
Permanent link
Title: R Interface to the Levenberg-Marquardt Nonlinear Least-Squares
Algorithm Found in MINPACK, Plus Support for Bounds
Description: The nls.lm function provides an R interface to lmder and lmdif from the MINPACK library, for solving nonlinear least-squares problems by a modification of the Levenberg-Marquardt algorithm, with support for lower and upper parameter bounds. The implementation can be used via nls-like calls using the nlsLM function.
Author: Timur V. Elzhov, Katharine M. Mullen, Andrej-Nikolai Spiess, Ben Bolker
Maintainer: Katharine M. Mullen <mullenkate@gmail.com>
Diff between minpack.lm versions 1.2-2 dated 2022-04-13 and 1.2-3 dated 2023-01-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 3 +++ man/nls.lm.Rd | 2 +- src/fcn_message.c | 20 ++++++++++---------- 5 files changed, 21 insertions(+), 18 deletions(-)
More information about matrixprofiler at CRAN
Permanent link
Title: Let Data Talk
Description: Methods and tools for creating a model set and estimating and evaluating the explanation or prediction power of its members.
'SUR' modelling (for parameter estimation), 'logit'/'probit' modelling (for binary classification), and 'VARMA' modelling (for time-series forecasting) are implemented.
Evaluations are both in-sample and out-of-sample.
It can be used for stepwise regression analysis <https://en.wikipedia.org/wiki/Stepwise_regression>,
automatic model selection and model averaging (Claeskens and Hjort (2008, ISBN:1139471805, 9781139471800)),
calculating benchmarks, and doing sensitivity analysis (Leamer (1983) <https://www.jstor.org/stable/1803924> proposal).
Author: Ramin Mojab [aut, cre],
Microsoft Corporation [cph] ,
Michael Hutt [cph] ,
Stephen Becker [cph] by Ciyou Zhu . L-BFGS-B Version 3.0 is an
algorithmic update from 2011, with coding changes by J. L. Morales),
Math.NET [cph] ,
Christian Ammer [cph]
Maintainer: Ramin Mojab <rmojab63@gmail.com>
Diff between ldt versions 0.1.1.0 dated 2023-01-16 and 0.1.4.0 dated 2023-01-26
DESCRIPTION | 19 - MD5 | 156 ++++---- R/plots.R | 683 ++++++++++++++++++------------------- inst/doc/dc_default.html | 2 man/PlotCoefs.Rd | 3 src/auc.cpp | 6 src/clustering.h | 2 src/correlation.cpp | 2 src/cost_matrix.cpp | 2 src/data_split.cpp | 2 src/data_split.h | 2 src/dataset.cpp | 2 src/decompositions.cpp | 2 src/derivative.cpp | 2 src/descriptive.cpp | 2 src/discrete_choice.cpp | 2 src/discrete_choice.h | 37 -- src/discrete_choice_extended.cpp | 2 src/discrete_choice_modelset.cpp | 8 src/discrete_choice_sim.cpp | 2 src/distance.cpp | 5 src/distribution_gld.cpp | 2 src/distributions_uni.cpp | 2 src/f_base.cpp | 2 src/f_cross_section.cpp | 2 src/f_day_based.cpp | 2 src/f_list.cpp | 4 src/f_week_based.cpp | 2 src/f_year_based.cpp | 2 src/frequency.h | 4 src/group_data.cpp | 2 src/hcluster.cpp | 2 src/helpers.cpp | 2 src/histogram.cpp | 2 src/lmbfgsb.cpp | 2 src/matrix.cpp | 6 src/matrix.h | 4 src/matrix_la.cpp | 2 src/matrix_sym.cpp | 2 src/matrix_utils.h | 16 src/mixture.cpp | 2 src/mnormal.cpp | 2 src/modelset.cpp | 2 src/mpolynomial.cpp | 2 src/nelder_mead.cpp | 2 src/newton.cpp | 2 src/optimization.h | 2 src/pca.cpp | 2 src/polynomial.cpp | 2 src/r_options.cpp | 6 src/scoring.cpp | 2 src/scoring.h | 6 src/searcher.cpp | 2 src/searchers.h | 38 +- src/statistics.cpp | 2 src/statistics.h | 8 src/summary.cpp | 2 src/sur.cpp | 10 src/sur.h | 6 src/sur_extended.cpp | 2 src/sur_modelset.cpp | 2 src/sur_projection.cpp | 2 src/sur_simulation.cpp | 2 src/variable.cpp | 2 src/variable.h | 2 src/varma.cpp | 23 - src/varma.h | 40 +- src/varma_arma.cpp | 2 src/varma_extended.cpp | 2 src/varma_forecast.cpp | 2 src/varma_modelset.cpp | 2 src/varma_restriction.cpp | 2 src/varma_simulation.cpp | 2 src/varma_sizes.cpp | 2 src/weighted4.cpp | 2 src/weighted_mean.cpp | 2 src/weighted_variance.cpp | 2 tests/testthat/test-r_statistics.R | 4 tests/testthat/test-r_varma.R | 3 79 files changed, 614 insertions(+), 593 deletions(-)
Title: Provides Access to Git Repositories
Description: Interface to the 'libgit2' library, which is a pure C
implementation of the 'Git' core methods. Provides access to 'Git'
repositories to extract data and running some basic 'Git'
commands.
Author: See AUTHORS file.
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between git2r versions 0.30.1 dated 2022-03-16 and 0.31.0 dated 2023-01-26
git2r-0.30.1/git2r/src/libgit2/src/buffer.c |only git2r-0.30.1/git2r/src/libgit2/src/buffer.h |only git2r-0.30.1/git2r/src/libgit2/src/message.h |only git2r-0.31.0/git2r/DESCRIPTION | 10 git2r-0.31.0/git2r/MD5 | 509 - git2r-0.31.0/git2r/NEWS.md | 7 git2r-0.31.0/git2r/configure | 4384 +++++----- git2r-0.31.0/git2r/configure.ac | 5 git2r-0.31.0/git2r/src/Makevars_libgit2.in | 47 git2r-0.31.0/git2r/src/libgit2/include/git2/apply.h | 18 git2r-0.31.0/git2r/src/libgit2/include/git2/attr.h | 13 git2r-0.31.0/git2r/src/libgit2/include/git2/blame.h | 5 git2r-0.31.0/git2r/src/libgit2/include/git2/blob.h | 15 git2r-0.31.0/git2r/src/libgit2/include/git2/branch.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/buffer.h | 96 git2r-0.31.0/git2r/src/libgit2/include/git2/cert.h | 4 git2r-0.31.0/git2r/src/libgit2/include/git2/checkout.h | 7 git2r-0.31.0/git2r/src/libgit2/include/git2/clone.h | 6 git2r-0.31.0/git2r/src/libgit2/include/git2/commit.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/common.h | 5 git2r-0.31.0/git2r/src/libgit2/include/git2/config.h | 22 git2r-0.31.0/git2r/src/libgit2/include/git2/credential.h | 3 git2r-0.31.0/git2r/src/libgit2/include/git2/credential_helpers.h | 1 git2r-0.31.0/git2r/src/libgit2/include/git2/deprecated.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/describe.h | 9 git2r-0.31.0/git2r/src/libgit2/include/git2/diff.h | 26 git2r-0.31.0/git2r/src/libgit2/include/git2/email.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/errors.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/filter.h | 9 git2r-0.31.0/git2r/src/libgit2/include/git2/graph.h | 1 git2r-0.31.0/git2r/src/libgit2/include/git2/ignore.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/index.h | 16 git2r-0.31.0/git2r/src/libgit2/include/git2/indexer.h | 19 git2r-0.31.0/git2r/src/libgit2/include/git2/merge.h | 26 git2r-0.31.0/git2r/src/libgit2/include/git2/message.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/object.h | 23 git2r-0.31.0/git2r/src/libgit2/include/git2/odb.h | 44 git2r-0.31.0/git2r/src/libgit2/include/git2/odb_backend.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/pack.h | 32 git2r-0.31.0/git2r/src/libgit2/include/git2/patch.h | 8 git2r-0.31.0/git2r/src/libgit2/include/git2/pathspec.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/proxy.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/rebase.h | 10 git2r-0.31.0/git2r/src/libgit2/include/git2/refdb.h | 3 git2r-0.31.0/git2r/src/libgit2/include/git2/reflog.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/refs.h | 4 git2r-0.31.0/git2r/src/libgit2/include/git2/remote.h | 221 git2r-0.31.0/git2r/src/libgit2/include/git2/repository.h | 23 git2r-0.31.0/git2r/src/libgit2/include/git2/reset.h | 4 git2r-0.31.0/git2r/src/libgit2/include/git2/revparse.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/revwalk.h | 5 git2r-0.31.0/git2r/src/libgit2/include/git2/signature.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/stash.h | 6 git2r-0.31.0/git2r/src/libgit2/include/git2/status.h | 12 git2r-0.31.0/git2r/src/libgit2/include/git2/submodule.h | 9 git2r-0.31.0/git2r/src/libgit2/include/git2/sys/commit_graph.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/sys/odb_backend.h | 7 git2r-0.31.0/git2r/src/libgit2/include/git2/sys/remote.h |only git2r-0.31.0/git2r/src/libgit2/include/git2/sys/stream.h | 2 git2r-0.31.0/git2r/src/libgit2/include/git2/sys/transport.h | 59 git2r-0.31.0/git2r/src/libgit2/include/git2/tag.h | 1 git2r-0.31.0/git2r/src/libgit2/include/git2/tree.h | 7 git2r-0.31.0/git2r/src/libgit2/include/git2/types.h | 14 git2r-0.31.0/git2r/src/libgit2/include/git2/version.h | 8 git2r-0.31.0/git2r/src/libgit2/include/git2/worktree.h | 14 git2r-0.31.0/git2r/src/libgit2/src/annotated_commit.h | 2 git2r-0.31.0/git2r/src/libgit2/src/apply.c | 36 git2r-0.31.0/git2r/src/libgit2/src/apply.h | 4 git2r-0.31.0/git2r/src/libgit2/src/attr.c | 36 git2r-0.31.0/git2r/src/libgit2/src/attr_file.c | 34 git2r-0.31.0/git2r/src/libgit2/src/attr_file.h | 8 git2r-0.31.0/git2r/src/libgit2/src/attrcache.c | 29 git2r-0.31.0/git2r/src/libgit2/src/blame_git.c | 2 git2r-0.31.0/git2r/src/libgit2/src/blob.c | 59 git2r-0.31.0/git2r/src/libgit2/src/blob.h | 2 git2r-0.31.0/git2r/src/libgit2/src/branch.c | 259 git2r-0.31.0/git2r/src/libgit2/src/branch.h | 18 git2r-0.31.0/git2r/src/libgit2/src/buf.c |only git2r-0.31.0/git2r/src/libgit2/src/buf.h |only git2r-0.31.0/git2r/src/libgit2/src/cc-compat.h | 2 git2r-0.31.0/git2r/src/libgit2/src/checkout.c | 142 git2r-0.31.0/git2r/src/libgit2/src/cherrypick.c | 20 git2r-0.31.0/git2r/src/libgit2/src/clone.c | 132 git2r-0.31.0/git2r/src/libgit2/src/commit.c | 186 git2r-0.31.0/git2r/src/libgit2/src/commit.h | 25 git2r-0.31.0/git2r/src/libgit2/src/commit_graph.c | 121 git2r-0.31.0/git2r/src/libgit2/src/commit_graph.h | 13 git2r-0.31.0/git2r/src/libgit2/src/commit_list.c | 5 git2r-0.31.0/git2r/src/libgit2/src/common.h | 13 git2r-0.31.0/git2r/src/libgit2/src/config.c | 165 git2r-0.31.0/git2r/src/libgit2/src/config.h | 17 git2r-0.31.0/git2r/src/libgit2/src/config_file.c | 194 git2r-0.31.0/git2r/src/libgit2/src/config_mem.c | 18 git2r-0.31.0/git2r/src/libgit2/src/config_parse.c | 50 git2r-0.31.0/git2r/src/libgit2/src/crlf.c | 45 git2r-0.31.0/git2r/src/libgit2/src/date.c | 27 git2r-0.31.0/git2r/src/libgit2/src/date.h |only git2r-0.31.0/git2r/src/libgit2/src/describe.c | 46 git2r-0.31.0/git2r/src/libgit2/src/diff.c | 33 git2r-0.31.0/git2r/src/libgit2/src/diff.h | 6 git2r-0.31.0/git2r/src/libgit2/src/diff_driver.c | 70 git2r-0.31.0/git2r/src/libgit2/src/diff_driver.h | 6 git2r-0.31.0/git2r/src/libgit2/src/diff_file.c | 49 git2r-0.31.0/git2r/src/libgit2/src/diff_generate.c | 36 git2r-0.31.0/git2r/src/libgit2/src/diff_generate.h | 8 git2r-0.31.0/git2r/src/libgit2/src/diff_print.c | 197 git2r-0.31.0/git2r/src/libgit2/src/diff_stats.c | 69 git2r-0.31.0/git2r/src/libgit2/src/diff_stats.h |only git2r-0.31.0/git2r/src/libgit2/src/diff_tform.c | 17 git2r-0.31.0/git2r/src/libgit2/src/diff_xdiff.c | 11 git2r-0.31.0/git2r/src/libgit2/src/email.c | 92 git2r-0.31.0/git2r/src/libgit2/src/email.h | 2 git2r-0.31.0/git2r/src/libgit2/src/errors.c | 36 git2r-0.31.0/git2r/src/libgit2/src/fetch.c | 93 git2r-0.31.0/git2r/src/libgit2/src/fetch.h | 2 git2r-0.31.0/git2r/src/libgit2/src/fetchhead.c | 38 git2r-0.31.0/git2r/src/libgit2/src/filebuf.c | 56 git2r-0.31.0/git2r/src/libgit2/src/filebuf.h | 2 git2r-0.31.0/git2r/src/libgit2/src/filter.c | 148 git2r-0.31.0/git2r/src/libgit2/src/filter.h | 31 git2r-0.31.0/git2r/src/libgit2/src/fs_path.c |only git2r-0.31.0/git2r/src/libgit2/src/fs_path.h |only git2r-0.31.0/git2r/src/libgit2/src/futils.c | 176 git2r-0.31.0/git2r/src/libgit2/src/futils.h | 40 git2r-0.31.0/git2r/src/libgit2/src/hash.c | 102 git2r-0.31.0/git2r/src/libgit2/src/hash.h | 24 git2r-0.31.0/git2r/src/libgit2/src/hash/sha1.h | 4 git2r-0.31.0/git2r/src/libgit2/src/hash/sha1/collisiondetect.c | 4 git2r-0.31.0/git2r/src/libgit2/src/hash/sha1/openssl.c | 4 git2r-0.31.0/git2r/src/libgit2/src/hash/sha1/sha1dc/sha1.c | 2 git2r-0.31.0/git2r/src/libgit2/src/ident.c | 36 git2r-0.31.0/git2r/src/libgit2/src/ignore.c | 67 git2r-0.31.0/git2r/src/libgit2/src/ignore.h | 4 git2r-0.31.0/git2r/src/libgit2/src/index.c | 159 git2r-0.31.0/git2r/src/libgit2/src/index.h | 9 git2r-0.31.0/git2r/src/libgit2/src/indexer.c | 132 git2r-0.31.0/git2r/src/libgit2/src/iterator.c | 120 git2r-0.31.0/git2r/src/libgit2/src/iterator.h | 10 git2r-0.31.0/git2r/src/libgit2/src/khash.h | 2 git2r-0.31.0/git2r/src/libgit2/src/libgit2.c | 33 git2r-0.31.0/git2r/src/libgit2/src/mailmap.c | 74 git2r-0.31.0/git2r/src/libgit2/src/merge.c | 54 git2r-0.31.0/git2r/src/libgit2/src/merge.h | 15 git2r-0.31.0/git2r/src/libgit2/src/merge_driver.c | 4 git2r-0.31.0/git2r/src/libgit2/src/merge_file.c | 16 git2r-0.31.0/git2r/src/libgit2/src/message.c | 31 git2r-0.31.0/git2r/src/libgit2/src/midx.c | 149 git2r-0.31.0/git2r/src/libgit2/src/midx.h | 6 git2r-0.31.0/git2r/src/libgit2/src/mwindow.c | 2 git2r-0.31.0/git2r/src/libgit2/src/net.c | 346 git2r-0.31.0/git2r/src/libgit2/src/net.h | 13 git2r-0.31.0/git2r/src/libgit2/src/netops.c | 2 git2r-0.31.0/git2r/src/libgit2/src/netops.h | 2 git2r-0.31.0/git2r/src/libgit2/src/notes.c | 49 git2r-0.31.0/git2r/src/libgit2/src/object.c | 58 git2r-0.31.0/git2r/src/libgit2/src/object.h | 2 git2r-0.31.0/git2r/src/libgit2/src/odb.c | 67 git2r-0.31.0/git2r/src/libgit2/src/odb.h | 2 git2r-0.31.0/git2r/src/libgit2/src/odb_loose.c | 136 git2r-0.31.0/git2r/src/libgit2/src/odb_mempack.c | 23 git2r-0.31.0/git2r/src/libgit2/src/odb_pack.c | 86 git2r-0.31.0/git2r/src/libgit2/src/oid.c | 15 git2r-0.31.0/git2r/src/libgit2/src/oid.h | 15 git2r-0.31.0/git2r/src/libgit2/src/pack-objects.c | 67 git2r-0.31.0/git2r/src/libgit2/src/pack-objects.h | 17 git2r-0.31.0/git2r/src/libgit2/src/pack.c | 20 git2r-0.31.0/git2r/src/libgit2/src/patch.c | 6 git2r-0.31.0/git2r/src/libgit2/src/patch.h | 1 git2r-0.31.0/git2r/src/libgit2/src/patch_generate.c | 38 git2r-0.31.0/git2r/src/libgit2/src/patch_generate.h | 10 git2r-0.31.0/git2r/src/libgit2/src/patch_parse.c | 48 git2r-0.31.0/git2r/src/libgit2/src/path.c | 1881 ---- git2r-0.31.0/git2r/src/libgit2/src/path.h | 737 - git2r-0.31.0/git2r/src/libgit2/src/pathspec.c | 12 git2r-0.31.0/git2r/src/libgit2/src/pathspec.h | 4 git2r-0.31.0/git2r/src/libgit2/src/posix.c | 6 git2r-0.31.0/git2r/src/libgit2/src/posix.h | 1 git2r-0.31.0/git2r/src/libgit2/src/pqueue.h | 2 git2r-0.31.0/git2r/src/libgit2/src/proxy.c | 5 git2r-0.31.0/git2r/src/libgit2/src/proxy.h | 2 git2r-0.31.0/git2r/src/libgit2/src/push.c | 65 git2r-0.31.0/git2r/src/libgit2/src/push.h | 20 git2r-0.31.0/git2r/src/libgit2/src/rand.c |only git2r-0.31.0/git2r/src/libgit2/src/rand.h |only git2r-0.31.0/git2r/src/libgit2/src/reader.c | 16 git2r-0.31.0/git2r/src/libgit2/src/reader.h | 4 git2r-0.31.0/git2r/src/libgit2/src/rebase.c | 177 git2r-0.31.0/git2r/src/libgit2/src/refdb_fs.c | 620 + git2r-0.31.0/git2r/src/libgit2/src/refs.c | 64 git2r-0.31.0/git2r/src/libgit2/src/refs.h | 4 git2r-0.31.0/git2r/src/libgit2/src/refspec.c | 69 git2r-0.31.0/git2r/src/libgit2/src/refspec.h | 7 git2r-0.31.0/git2r/src/libgit2/src/regexp.c | 2 git2r-0.31.0/git2r/src/libgit2/src/remote.c | 1138 +- git2r-0.31.0/git2r/src/libgit2/src/remote.h | 25 git2r-0.31.0/git2r/src/libgit2/src/repository.c | 661 - git2r-0.31.0/git2r/src/libgit2/src/repository.h | 20 git2r-0.31.0/git2r/src/libgit2/src/reset.c | 13 git2r-0.31.0/git2r/src/libgit2/src/revert.c | 20 git2r-0.31.0/git2r/src/libgit2/src/revparse.c | 83 git2r-0.31.0/git2r/src/libgit2/src/revwalk.c | 14 git2r-0.31.0/git2r/src/libgit2/src/signature.c | 18 git2r-0.31.0/git2r/src/libgit2/src/signature.h | 2 git2r-0.31.0/git2r/src/libgit2/src/sortedcache.c | 2 git2r-0.31.0/git2r/src/libgit2/src/sortedcache.h | 2 git2r-0.31.0/git2r/src/libgit2/src/stash.c | 73 git2r-0.31.0/git2r/src/libgit2/src/status.c | 5 git2r-0.31.0/git2r/src/libgit2/src/str.c |only git2r-0.31.0/git2r/src/libgit2/src/str.h |only git2r-0.31.0/git2r/src/libgit2/src/streams/mbedtls.c | 14 git2r-0.31.0/git2r/src/libgit2/src/streams/openssl_dynamic.h | 6 git2r-0.31.0/git2r/src/libgit2/src/submodule.c | 330 git2r-0.31.0/git2r/src/libgit2/src/submodule.h | 2 git2r-0.31.0/git2r/src/libgit2/src/sysdir.c | 120 git2r-0.31.0/git2r/src/libgit2/src/sysdir.h | 25 git2r-0.31.0/git2r/src/libgit2/src/tag.c | 56 git2r-0.31.0/git2r/src/libgit2/src/thread.h | 6 git2r-0.31.0/git2r/src/libgit2/src/threadstate.c | 6 git2r-0.31.0/git2r/src/libgit2/src/threadstate.h | 2 git2r-0.31.0/git2r/src/libgit2/src/trace.c | 15 git2r-0.31.0/git2r/src/libgit2/src/trace.h | 27 git2r-0.31.0/git2r/src/libgit2/src/trailer.c | 2 git2r-0.31.0/git2r/src/libgit2/src/transaction.c | 2 git2r-0.31.0/git2r/src/libgit2/src/transport.c | 20 git2r-0.31.0/git2r/src/libgit2/src/transports/auth.c | 16 git2r-0.31.0/git2r/src/libgit2/src/transports/auth.h | 5 git2r-0.31.0/git2r/src/libgit2/src/transports/auth_ntlm.c | 20 git2r-0.31.0/git2r/src/libgit2/src/transports/auth_ntlm.h | 1 git2r-0.31.0/git2r/src/libgit2/src/transports/git.c | 20 git2r-0.31.0/git2r/src/libgit2/src/transports/http.c | 54 git2r-0.31.0/git2r/src/libgit2/src/transports/http.h | 5 git2r-0.31.0/git2r/src/libgit2/src/transports/httpclient.c | 130 git2r-0.31.0/git2r/src/libgit2/src/transports/local.c | 238 git2r-0.31.0/git2r/src/libgit2/src/transports/smart.c | 190 git2r-0.31.0/git2r/src/libgit2/src/transports/smart.h | 56 git2r-0.31.0/git2r/src/libgit2/src/transports/smart_pkt.c | 66 git2r-0.31.0/git2r/src/libgit2/src/transports/smart_protocol.c | 96 git2r-0.31.0/git2r/src/libgit2/src/transports/ssh.c | 159 git2r-0.31.0/git2r/src/libgit2/src/transports/winhttp.c | 106 git2r-0.31.0/git2r/src/libgit2/src/tree-cache.c | 10 git2r-0.31.0/git2r/src/libgit2/src/tree-cache.h | 4 git2r-0.31.0/git2r/src/libgit2/src/tree.c | 107 git2r-0.31.0/git2r/src/libgit2/src/tree.h | 2 git2r-0.31.0/git2r/src/libgit2/src/unix/map.c | 2 git2r-0.31.0/git2r/src/libgit2/src/unix/posix.h | 5 git2r-0.31.0/git2r/src/libgit2/src/unix/realpath.c | 2 git2r-0.31.0/git2r/src/libgit2/src/util.c | 28 git2r-0.31.0/git2r/src/libgit2/src/util.h | 30 git2r-0.31.0/git2r/src/libgit2/src/vector.h | 2 git2r-0.31.0/git2r/src/libgit2/src/worktree.c | 210 git2r-0.31.0/git2r/src/libgit2/src/worktree.h | 2 git2r-0.31.0/git2r/src/libgit2/src/xdiff/git-xdiff.h |only git2r-0.31.0/git2r/src/libgit2/src/xdiff/xdiff.h | 30 git2r-0.31.0/git2r/src/libgit2/src/xdiff/xdiffi.c | 242 git2r-0.31.0/git2r/src/libgit2/src/xdiff/xemit.c | 30 git2r-0.31.0/git2r/src/libgit2/src/xdiff/xhistogram.c | 165 git2r-0.31.0/git2r/src/libgit2/src/xdiff/xinclude.h | 13 git2r-0.31.0/git2r/src/libgit2/src/xdiff/xmerge.c | 221 git2r-0.31.0/git2r/src/libgit2/src/xdiff/xpatience.c | 23 git2r-0.31.0/git2r/src/libgit2/src/xdiff/xprepare.c | 35 git2r-0.31.0/git2r/src/libgit2/src/xdiff/xutils.c | 25 git2r-0.31.0/git2r/src/libgit2/src/zstream.c | 10 git2r-0.31.0/git2r/src/libgit2/src/zstream.h | 8 263 files changed, 9767 insertions(+), 9829 deletions(-)
Title: Convert Dataframe to 'YAML'
Description: The 'df2yaml' aims to simplify the process of converting 'dataframe' to 'YAML' <https://yaml.org/>.
The 'dataframe' with multiple key columns and one value column will be converted to the multi-level hierarchy.
Author: Yabing Song [aut, cre]
Maintainer: Yabing Song <songyb0519@gmail.com>
Diff between df2yaml versions 0.3.0 dated 2023-01-17 and 0.3.1 dated 2023-01-26
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ README.md | 9 +++++---- build/vignette.rds |binary inst/doc/df2yaml.Rmd | 6 +++++- inst/doc/df2yaml.html | 7 ++++--- vignettes/df2yaml.Rmd | 6 +++++- 7 files changed, 28 insertions(+), 18 deletions(-)
Title: Biochemically Intuitive Generalized Loewe Model
Description: Response surface methods for drug synergy analysis. Available
methods include generalized and classical Loewe formulations as well as Highest
Single Agent methodology. Response surfaces can be plotted in an interactive
3-D plot and formal statistical tests for presence of synergistic effects are
available. Implemented methods and tests are described in the article
"BIGL: Biochemically Intuitive Generalized Loewe null model for prediction
of the expected combined effect compatible with partial agonism and antagonism"
by Koen Van der Borght, Annelies Tourny, Rytis Bagdziunas, Olivier Thas,
Maxim Nazarov, Heather Turner, Bie Verbist & Hugo Ceulemans (2017)
<doi:10.1038/s41598-017-18068-5>.
Author: Heather Turner, Annelies Tourny, Olivier Thas, Maxim Nazarov, Rytis Bagdziunas, Stijn Hawinkel
Maintainer: Maxim Nazarov <maxim.nazarov@openanalytics.eu>
Diff between BIGL versions 1.6.6 dated 2022-05-05 and 1.6.7 dated 2023-01-26
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- R/plotReponseSurface.R | 2 +- inst/NEWS | 2 ++ inst/doc/analysis.R | 8 ++++---- inst/doc/analysis.Rmd | 8 ++++---- inst/doc/analysis.html | 34 +++++++++++++++++++++------------- inst/doc/methodology.html | 5 +++-- inst/ui/server.R | 2 +- man/bootConfInt.Rd | 4 +--- man/maxR.Rd | 4 +--- man/plot.maxR.Rd | 4 +++- tests/testthat.R | 3 --- tests/testthat/test_wrapper.R | 6 +++--- vignettes/analysis.Rmd | 8 ++++---- 15 files changed, 67 insertions(+), 61 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-04 0.1-16
2018-01-11 0.1-15
2015-05-28 0.1-14
2014-10-16 0.1-10
2014-06-27 0.1-9
2014-06-17 0.1-8
2014-06-16 0.1-7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-13 0.4.0-3
2022-10-25 0.4.0-2
2022-08-15 0.4.0-1
2022-02-25 0.4.0
2021-09-26 0.3.1-3
2021-09-02 0.3.1-2
2021-08-21 0.3.1-1
2021-07-13 0.3.1
2021-05-08 0.3.0-1
2021-04-06 0.3.0
2021-01-08 0.2.7
2020-11-13 0.2.6
2020-09-12 0.2.5
2020-08-26 0.2.4
2020-08-10 0.2.3
2020-05-26 0.2.0
2019-09-04 0.1.3
2019-08-29 0.1.2
2019-08-01 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-12 0.1.0-5
2022-08-06 0.1.0-4
2021-12-03 0.1.0-3
2021-10-08 0.1.0-2.1
2021-09-13 0.1.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-12-20 1.4.2
2021-10-20 1.4.1
2020-05-17 1.3.1
2020-05-11 1.3.0
2020-04-22 1.2.0
2017-08-02 1.0.1
2017-02-11 1.0.0
2016-10-13 0.8.0
2016-04-22 0.7.0
2015-10-12 0.5.0
2015-07-25 0.4.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-25 1.2.2
2021-07-29 1.2.1
2021-07-28 1.2
2019-01-08 1.1
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include 'Microsoft SQL Server', 'Oracle',
'PostgreSql', 'Amazon RedShift', 'Apache Impala', 'IBM Netezza', 'Google BigQuery', 'Microsoft PDW', 'Snowflake',
'Azure Synapse Analytics Dedicated', 'Apache Spark', and 'SQLite'.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.11.1 dated 2023-01-11 and 1.12.0 dated 2023-01-26
DESCRIPTION | 8 +++--- MD5 | 21 +++++++++--------- NEWS.md | 14 ++++++++++++ R/HelperFunctions.R | 31 +++++++++++--------------- inst/csv/jarChecksum.txt | 2 - inst/csv/replacementPatterns.csv | 36 ++++++++++++++++++++----------- inst/doc/UsingSqlRender.pdf |binary inst/java/SqlRender.jar |binary inst/sql/test2.sql |only tests/testthat/test-helperFunctions.R | 6 +++++ tests/testthat/test-translate-bigquery.R | 12 +++++++++- tests/testthat/test-translate-sqlite.R | 6 +++++ 12 files changed, 90 insertions(+), 46 deletions(-)
Title: Parametric Statistical Modelling and Inference for the
'spatstat' Family
Description: Functionality for parametric statistical modelling and inference for spatial data,
mainly spatial point patterns, in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Supports parametric modelling, formal statistical inference, and model validation.
Parametric models include Poisson point processes, Cox point processes, Neyman-Scott cluster processes, Gibbs point processes and determinantal point processes. Models can be fitted to data using maximum likelihood, maximum pseudolikelihood, maximum composite likelihood and the method of minimum contrast. Fitted models can be simulated and predicted. Formal inference includes hypothesis tests (quadrat counting tests, Cressie-Read tests, Clark-Evans test, Berman test, Diggle-Cressie-Loosmore-Ford test, scan test, studentised permutation test, segregation test, ANOVA tests of fitted models, adjusted composite likelihood ratio test, envelope t [...truncated...]
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Achmad Choiruddin [ctb, cph],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Julian Gilbey [ctb],
Yongtao [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.model versions 3.0-2 dated 2022-11-07 and 3.1-2 dated 2023-01-26
DESCRIPTION | 33 + MD5 | 57 +-- NAMESPACE | 23 + NEWS | 112 ++++++ R/auc.R | 2 R/cdftest.R | 2 R/envelope.R | 2 R/kppm.R | 710 ++++++++++++++++++++++++++++++++++++---- R/makepspace.R |only R/mincontrast.R | 125 ++++++- R/objsurf.R | 67 +++ R/palmdiagnose.R |only R/panysib.R |only R/poissonfitsbetter.R |only R/simulatekppm.R | 14 R/summary.kppm.R | 128 ++++++- R/traj.R |only R/varcount.R | 11 R/zclustermodel.R | 2 inst/CITATION | 8 inst/doc/packagesizes.txt | 3 man/is.poissonclusterprocess.Rd |only man/kppm.Rd | 50 ++ man/macros/defns.Rd | 2 man/methods.traj.Rd |only man/objsurf.Rd | 30 + man/palmdiagnose.Rd |only man/panysib.Rd |only man/plot.palmdiag.Rd |only man/psib.Rd | 11 man/spatstat.model-internal.Rd | 15 man/summary.kppm.Rd | 6 man/traj.Rd |only man/varcount.Rd | 19 - tests/testsEtoF.R | 2 35 files changed, 1275 insertions(+), 159 deletions(-)
More information about spatstat.model at CRAN
Permanent link
Title: Interface to 'REDCap'
Description: Access data stored in 'REDCap' databases using the Application
Programming Interface (API). 'REDCap' (Research Electronic Data CAPture;
<https://projectredcap.org>) is
a web application for building and managing online surveys and databases
developed at Vanderbilt University. The API allows users to access data
and project meta data (such as the data dictionary) from the web
programmatically. The 'redcapAPI' package facilitates the process of
accessing data with options to prepare an analysis-ready data set
consistent with the definitions in a database's data dictionary.
Author: Shawn Garbett [cre, ctb],
Benjamin Nutter [ctb, aut],
Stephen Lane [ctb],
Will Beasley [ctb],
Jeffrey Horner [aut],
Will Gray [ctb],
Jeremy Stephens [ctb],
Marcus Lehr [ctb]
Maintainer: Shawn Garbett <shawn.garbett@vumc.org>
Diff between redcapAPI versions 2.3 dated 2020-02-17 and 2.3.3 dated 2023-01-26
DESCRIPTION | 32 ++++++++++++++------------- MD5 | 50 +++++++++++++++++++++---------------------- NAMESPACE | 3 ++ NEWS | 9 ++++++- R/checkbox_suffixes.R | 4 +-- R/deleteFiles.R | 2 - R/deleteRecords.R | 16 +++++++++---- R/exportMetaData.R | 9 ------- R/exportRecords.R | 23 +++++-------------- R/exportRecords_offline.R | 8 +++++- R/exportReports.R | 6 ++++- R/exportSurveyParticipants.R | 4 +-- R/importFiles.R | 3 +- R/importRecords.R | 23 ++++++------------- R/recodeCheck.R | 6 ++++- R/redcapAPI-pkg.R | 8 +++--- R/redcapConnection.R | 17 -------------- R/validateImport.R | 7 ++---- R/validateImport_methods.R | 11 +++++---- README.md | 25 +++++++++++++-------- man/exportMetaData.Rd | 9 ------- man/exportRecords.Rd | 15 ------------ man/importRecords.Rd | 8 ------ man/redcapAPI.Rd | 8 +++--- man/redcapConnection.Rd | 17 -------------- man/validateImport.Rd | 3 -- 26 files changed, 135 insertions(+), 191 deletions(-)
Title: Prioritize Variables with Joint Variable Importance Plot in
Observational Study Design
Description: In the observational study design stage, matching/weighting methods are
conducted. However, when many background variables are present, the decision as to
which variables to prioritize for matching/weighting is not trivial. Thus, the
joint treatment-outcome variable importance plots are created to guide variable
selection. The joint variable importance plots enhance variable comparisons via bias
curves, derived using the classical omitted variable bias framework. The joint
variable importance plots translate variable importance into recommended values for
tuning parameters in existing methods. Post-matching and/or weighting plots can also
be used to visualize and assess the quality of the observational study design. The
package and its usage is showcased in "Using Joint Variable Importance Plots to
Prioritize Variables in Assessing the Impact of Glyburide on Adverse Birth Outcomes" by
Liao et al. (2023) <arXiv:2301.09754>.
Author: Lauren D. Liao [aut, cre] ,
Samuel D. Pimentel [aut]
Maintainer: Lauren D. Liao <ldliao@berkeley.edu>
Diff between jointVIP versions 0.1.0 dated 2022-12-21 and 0.1.1 dated 2023-01-26
DESCRIPTION | 11 - MD5 | 21 +- NEWS.md | 8 README.md | 11 - inst/doc/additional_options.Rmd | 2 inst/doc/additional_options.html | 122 ++++++------ inst/doc/jointVIP.R | 3 inst/doc/jointVIP.Rmd | 4 inst/doc/jointVIP.html | 370 +++++++++++++++++++-------------------- man/figures/jointVIP_logo.png |only vignettes/additional_options.Rmd | 2 vignettes/jointVIP.Rmd | 4 12 files changed, 291 insertions(+), 267 deletions(-)
Title: Bibtex Parser
Description: Utility to parse a bibtex file.
Author: Romain Francois [aut, cph] ,
James Joseph Balamuta [ctb, cre]
,
Diego Hernangomez [aut] ,
Scott Chamberlain [ctb] ,
Kurt Hornik [ctb] ,
Brian Ripley [ctb] ,
Michael Koohafkan [ctb],
Mathew W. McLean [ctb]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between bibtex versions 0.5.0 dated 2022-09-25 and 0.5.1 dated 2023-01-26
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Title: Tools for Message Passing Between Processes
Description: Provides tools for passing messages between R processes.
Shiny examples are provided showing how to perform useful tasks such as:
updating reactive values from within a future, progress bars for long running
async tasks, and interrupting async tasks based on user input.
Author: Ian E. Fellows
Maintainer: Ian E. Fellows <ian@fellstat.com>
Diff between ipc versions 0.1.3 dated 2019-06-23 and 0.1.4 dated 2023-01-26
ipc-0.1.3/ipc/tests |only ipc-0.1.4/ipc/DESCRIPTION | 11 ipc-0.1.4/ipc/MD5 | 58 +- ipc-0.1.4/ipc/R/async-interrupt.R | 9 ipc-0.1.4/ipc/R/async-progress.R | 82 +- ipc-0.1.4/ipc/R/consumer.R | 79 +- ipc-0.1.4/ipc/R/package.R | 3 ipc-0.1.4/ipc/R/producer.R | 83 +- ipc-0.1.4/ipc/R/queue.R | 74 ++ ipc-0.1.4/ipc/R/redis-source.R | 11 ipc-0.1.4/ipc/R/text-file-source.R | 8 ipc-0.1.4/ipc/build/vignette.rds |binary ipc-0.1.4/ipc/inst/apps/changeReactive/app.R | 2 ipc-0.1.4/ipc/inst/apps/progress/app.R | 2 ipc-0.1.4/ipc/inst/doc/shinymp.R | 32 - ipc-0.1.4/ipc/inst/doc/shinymp.Rmd | 14 ipc-0.1.4/ipc/inst/doc/shinymp.html | 749 +++++++++++++++------------ ipc-0.1.4/ipc/man/AsyncInterruptor.Rd | 106 +++ ipc-0.1.4/ipc/man/AsyncProgress.Rd | 224 ++++++-- ipc-0.1.4/ipc/man/Consumer.Rd | 252 +++++++-- ipc-0.1.4/ipc/man/Producer.Rd | 187 +++++- ipc-0.1.4/ipc/man/Queue.Rd | 142 ++++- ipc-0.1.4/ipc/man/RedisSource.Rd | 124 ++++ ipc-0.1.4/ipc/man/ShinyConsumer.Rd | 61 ++ ipc-0.1.4/ipc/man/ShinyProducer.Rd | 119 +++- ipc-0.1.4/ipc/man/TextFileSource.Rd | 105 +++ ipc-0.1.4/ipc/man/ipc-package.Rd | 3 ipc-0.1.4/ipc/man/shinyQueue.Rd | 6 ipc-0.1.4/ipc/man/stopMulticoreFuture.Rd | 2 ipc-0.1.4/ipc/vignettes/shinymp.Rmd | 14 30 files changed, 1842 insertions(+), 720 deletions(-)
Title: An R Autograding Extension for Otter-Grader
Description: An R autograding extension for Otter-Grader (<https://otter-grader.readthedocs.io>). It supports
grading R scripts, R Markdown documents, and R Jupyter Notebooks.
Author: Christopher Pyles [aut, cre] ,
UC Berkeley Data Science Education Program [cph]
Maintainer: Christopher Pyles <cpyles@berkeley.edu>
Diff between ottr versions 1.3.0 dated 2022-12-17 and 1.3.1 dated 2023-01-26
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 2 ++ R/GradingResults.R | 2 ++ R/TestCase.R | 2 ++ R/export.R | 4 ++-- tests/testthat/test_export.R | 2 +- 7 files changed, 19 insertions(+), 13 deletions(-)