Title: Core Functionality for Environmental Time Series
Description: Utility functions for working with environmental time series data from known
locations. The compact data model is structured as a list with two dataframes. A
'meta' dataframe contains spatial and measuring device metadata associated with
deployments at known locations. A 'data' dataframe contains a 'datetime' column
followed by columns of measurements associated with each "device-deployment".
Ephemerides calculations are based on code originally found in NOAA's
"Solar Calculator" <https://gml.noaa.gov/grad/solcalc/>.
Author: Jonathan Callahan [aut, cre],
Hans Martin [ctb],
Eli Grosman [ctb],
Roger Bivand [ctb],
Sebastian Luque [ctb]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaTimeSeries versions 0.2.8 dated 2022-10-13 and 0.2.10 dated 2023-01-30
DESCRIPTION | 8 +- MD5 | 28 +++++----- NAMESPACE | 1 NEWS.md | 13 ++++ R/mts_collapse.R | 6 +- R/mts_combine.R | 106 +++++++++++++++++++++++++++++--------- R/mts_trim.R |only build/vignette.rds |binary data/Camp_Fire.rda |binary data/Carmel_Valley.rda |binary data/example_mts.rda |binary data/example_raws.rda |binary data/example_sts.rda |binary man/mts_combine.Rd | 16 +++++ man/mts_trim.Rd |only tests/testthat/test-mts_combine.R | 32 +++++++++++ 16 files changed, 166 insertions(+), 44 deletions(-)
More information about MazamaTimeSeries at CRAN
Permanent link
Title: Bootstrap Methods for Nested Linear Mixed-Effects Models
Description: Bootstrap routines for nested linear mixed effects models fit using
either 'lme4' or 'nlme'. The provided 'bootstrap()' function implements the
parametric, residual, cases, random effect block (REB), and wild bootstrap
procedures. An overview of these procedures can be found
in Van der Leeden et al. (2008) <doi: 10.1007/978-0-387-73186-5_11>,
Carpenter, Goldstein & Rasbash (2003) <doi: 10.1111/1467-9876.00415>,
and Chambers & Chandra (2013) <doi: 10.1080/10618600.2012.681216>.
Author: Adam Loy [aut, cre] ,
Spenser Steele [aut],
Jenna Korobova [aut]
Maintainer: Adam Loy <loyad01@gmail.com>
Diff between lmeresampler versions 0.2.2 dated 2022-04-29 and 0.2.3 dated 2023-01-30
DESCRIPTION | 8 MD5 | 37 NAMESPACE | 1 NEWS | 27 R/bootstrap_lme4.R | 29 R/bootstrap_nlme.R | 13 R/complete.R | 31 R/generics.R | 16 R/print.R | 5 R/pvals.R | 4 R/resamplers.R | 8 R/setup.R | 18 build/vignette.rds |binary inst/doc/lmeresampler-vignette.html | 910 +++++++--- man/bootstrap.Rd | 22 man/bootstrap_pvals.Rd | 7 man/print.coef_tbl.Rd | 4 man/resid_bootstrap.Rd | 17 tests/testthat/reference_data_for_rbootnoise_test_A071022.RData |only tests/testthat/reference_data_for_rbootnoise_test_B071022.RData |only tests/testthat/test-rbootnoise.R |only 21 files changed, 847 insertions(+), 310 deletions(-)
Title: Easy Model-Builder Functions for 'OpenMx'
Description: Utilities for building certain kinds of common matrices and models in
the extended structural equation modeling package, 'OpenMx'.
Author: Michael D. Hunter [aut, cre] ,
Joshua N. Pritikin [ctb]
Maintainer: Michael D. Hunter <mhunter.ou@gmail.com>
Diff between EasyMx versions 0.2-12 dated 2020-01-30 and 0.3-2 dated 2023-01-30
DESCRIPTION | 16 ++++++++-------- MD5 | 12 ++++++++---- R/emxModelBuilders.R | 2 +- R/emxTimeSeries.R |only man/EasyMx-package.Rd | 2 ++ man/emxMeans.Rd | 2 +- man/emxStateSpaceMixtureClassify.Rd |only man/emxStateSpaceMixtureModel.Rd |only man/emxVARModel.Rd |only 9 files changed, 20 insertions(+), 14 deletions(-)
Title: Generate Citation File Format ('cff') Metadata for R Packages
Description: The Citation File Format version 1.2.0
<doi:10.5281/zenodo.5171937> is a human and machine readable file
format which provides citation metadata for software. This package
provides core utilities to generate and validate this metadata.
Author: Diego Hernangomez [aut, cre, cph]
,
Joao Martins [rev] ,
Scott Chamberlain [rev]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between cffr versions 0.4.0 dated 2022-11-17 and 0.4.1 dated 2023-01-30
DESCRIPTION | 10 MD5 | 52 NEWS.md | 5 R/cff_description.R | 1 R/cff_gha_update.R | 148 - R/cff_git_hook.R | 186 +- R/cff_validate.R | 303 +-- R/cff_write.R | 282 +-- R/utils.R | 314 +-- README.md | 91 - inst/WORDLIST | 2 inst/doc/bibtex_cff.R | 17 inst/doc/bibtex_cff.Rmd | 17 inst/doc/bibtex_cff.html | 124 - inst/doc/cffr.R | 11 inst/doc/cffr.Rmd | 553 +++--- inst/doc/cffr.html | 695 ++++---- inst/doc/crosswalk.R | 18 inst/doc/crosswalk.Rmd | 18 inst/doc/crosswalk.html | 2343 +++++++++++++--------------- inst/examples/CITATION_rmarkdown | 3 tests/testthat.R | 8 tests/testthat/_snaps/parse_dependencies.md | 6 tests/testthat/test-mock-package.R | 128 - vignettes/bibtex_cff.Rmd | 17 vignettes/cffr.Rmd | 553 +++--- vignettes/crosswalk.Rmd | 18 27 files changed, 2852 insertions(+), 3071 deletions(-)
Title: Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
Description: Tools for the analysis of finite semiparametric mixtures.
These are useful when data is heterogeneous, e.g. in
pharmacokinetics or meta-analysis. The NPMLE and VEM algorithms
(flexible support size) and EM algorithms (fixed support size)
are provided for univariate (Bohning et al., 1992;
<doi:10.2307/2532756>) and bivariate data (Schlattmann et
al., 2015; <doi:10.1016/j.jclinepi.2014.08.013>).
Author: Peter Schlattmann <peter.schlattmann@mti.uni-jena.de>, Johannes
Hoehne, Maryna Verba
Maintainer: Philipp Doebler <philipp.doebler@googlemail.com>
Diff between CAMAN versions 0.75 dated 2022-04-16 and 0.76 dated 2023-01-30
DESCRIPTION | 12 - MD5 | 34 ++-- data/CT.RData |binary data/GDRmap.RData |binary data/NoP.RData |binary data/PCT.RData |binary data/aspirin.RData |binary data/betaplasma.RData |binary data/golubMerge.RData |binary data/heage.RData |binary data/hepab.RData |binary data/leukDat.RData |binary data/rs12363681.RData |binary data/thai_cohort.RData |binary data/vitA.RData |binary data/vitA2.RData |binary data/vitamin.RData |binary src/vemema_vem.cpp | 406 ++++++++++++++++++++++++------------------------- 18 files changed, 226 insertions(+), 226 deletions(-)
Title: Multi-Scale Geomorphometric Terrain Attributes
Description: Calculates multi-scale geomorphometric terrain attributes from regularly gridded digital terrain models using a variable focal windows size (Misiuk et al. (2021) <doi:10.1080/01490419.2021.1925789>; Wilson et al. (2007) <doi:10.1080/01490410701295962>; Wood (1996) <https://hdl.handle.net/2381/34503>).
Author: Alexander Ilich [aut, cre] ,
Vincent Lecours [aut],
Benjamin Misiuk [aut],
Steven Murawski [aut]
Maintainer: Alexander Ilich <ailich@usf.edu>
Diff between MultiscaleDTM versions 0.5.3 dated 2022-10-04 and 0.5.5 dated 2023-01-30
DESCRIPTION | 12 +- MD5 | 16 +-- R/VRM.R | 8 - README.md | 156 +++++++++++++++--------------- man/VRM.Rd | 4 man/figures/README-unnamed-chunk-16-1.png |binary man/figures/kwindow.png |binary src/Makevars | 2 src/Makevars.win | 2 9 files changed, 103 insertions(+), 97 deletions(-)
Title: R Interface to 'IGN' Web Services
Description: Interface to easily access the National Institute of
Geographic and Forestry Information open-source data from Geoservice
website for any area of interest in France via WFS (shapefile) and WMS
(raster) web services
<https://geoservices.ign.fr/services-web-experts>.
Author: Paul Carteron [aut, cre]
Maintainer: Paul Carteron <carteronpaul@gmail.com>
Diff between happign versions 0.1.7 dated 2022-11-18 and 0.1.8 dated 2023-01-30
happign-0.1.7/happign/R/init.R |only happign-0.1.7/happign/tests/testthat/get_apicarto_commune_1 |only happign-0.1.7/happign/tests/testthat/get_apicarto_commune_2 |only happign-0.1.7/happign/tests/testthat/get_apicarto_commune_4 |only happign-0.1.7/happign/tests/testthat/get_apicarto_gpu geom |only happign-0.1.7/happign/tests/testthat/get_layers_metada_wfs/wxs.ign.fr/altimetrie/geoportail/wfs-ae6f0d.xml |only happign-0.1.7/happign/tests/testthat/get_layers_metada_wms/wxs.ign.fr/ortho/geoportail/r/wms-d98bfb.R |only happign-0.1.7/happign/tests/testthat/get_wfs simple request |only happign-0.1.7/happign/tests/testthat/hit_api_wfs perform request |only happign-0.1.7/happign/tests/testthat/test-init.R |only happign-0.1.7/happign/vignettes/Getting_started-unnamed-chunk-5-1.png |only happign-0.1.8/happign/DESCRIPTION | 14 happign-0.1.8/happign/MD5 | 122 happign-0.1.8/happign/NAMESPACE | 14 happign-0.1.8/happign/NEWS.md | 17 happign-0.1.8/happign/R/get_apicarto_cadastre.R | 18 happign-0.1.8/happign/R/get_apicarto_commune.R | 56 happign-0.1.8/happign/R/get_apicarto_gpu.R | 89 happign-0.1.8/happign/R/get_last_news.R | 11 happign-0.1.8/happign/R/get_layers_metadata.R | 59 happign-0.1.8/happign/R/get_raw_lidar.R | 20 happign-0.1.8/happign/R/get_wfs.R | 280 + happign-0.1.8/happign/R/get_wfs_attributes.R |only happign-0.1.8/happign/R/get_wms_info.R | 69 happign-0.1.8/happign/R/get_wms_raster.R | 71 happign-0.1.8/happign/R/sysdata.rda |only happign-0.1.8/happign/R/utils.R |only happign-0.1.8/happign/R/zzz.R |only happign-0.1.8/happign/inst/doc/Getting_started.Rmd | 75 happign-0.1.8/happign/inst/doc/Getting_started.html | 149 happign-0.1.8/happign/inst/doc/SCAN_25_SCAN_100_SCAN_OACI.html | 2 happign-0.1.8/happign/inst/extdata |only happign-0.1.8/happign/man/get_apicarto_gpu.Rd | 63 happign-0.1.8/happign/man/get_wfs.Rd | 65 happign-0.1.8/happign/man/get_wfs_attributes.Rd |only happign-0.1.8/happign/man/get_wms_info.Rd | 14 happign-0.1.8/happign/man/get_wms_raster.Rd | 19 happign-0.1.8/happign/tests/testthat/are_queryable works/wxs.ign.fr/administratif/geoportail/r/wms-21553a.R | 9 happign-0.1.8/happign/tests/testthat/get_api_cadastre char/apicarto.ign.fr/api/cadastre/parcelle-8c2e01.R | 4 happign-0.1.8/happign/tests/testthat/get_api_cadastre char/apicarto.ign.fr/api/cadastre/parcelle-915579.R | 4 happign-0.1.8/happign/tests/testthat/get_api_com |only happign-0.1.8/happign/tests/testthat/get_api_com_error |only happign-0.1.8/happign/tests/testthat/get_api_com_sfc |only happign-0.1.8/happign/tests/testthat/get_apicarto_cadastre sf/apicarto.ign.fr/api/cadastre/parcelle-0c0796.R | 4 happign-0.1.8/happign/tests/testthat/get_apicarto_cadastre sf/apicarto.ign.fr/api/cadastre/parcelle-c741cd.R | 4 happign-0.1.8/happign/tests/testthat/get_apicarto_cadastre sfc/apicarto.ign.fr/api/cadastre/parcelle-0c0796.R | 4 happign-0.1.8/happign/tests/testthat/get_apicarto_cadastre sfc/apicarto.ign.fr/api/cadastre/parcelle-c741cd.R | 4 happign-0.1.8/happign/tests/testthat/get_apicarto_gpu partition/apicarto.ign.fr/api/gpu/zone-urba-8f23f7.R | 2 happign-0.1.8/happign/tests/testthat/get_last_news/geoservices.ign.fr/actualites/rss.xml.R | 1574 +++++----- happign-0.1.8/happign/tests/testthat/get_last_news_error |only happign-0.1.8/happign/tests/testthat/get_layers_metada_wfs/wxs.ign.fr/altimetrie/geoportail/wfs-866ab9.xml |only happign-0.1.8/happign/tests/testthat/get_layers_metada_wms/wxs.ign.fr/ortho/geoportail/r/wms-3fee96.R |only happign-0.1.8/happign/tests/testthat/get_wms_info return error/wxs.ign.fr/ortho/geoportail/r/wms-21553a.R | 9 happign-0.1.8/happign/tests/testthat/get_wms_info works/wxs.ign.fr/ortho/geoportail/r/wms-21553a.R | 9 happign-0.1.8/happign/tests/testthat/get_wms_info works/wxs.ign.fr/ortho/geoportail/r/wms-a11dce.R | 9 happign-0.1.8/happign/tests/testthat/setup.R | 1 happign-0.1.8/happign/tests/testthat/test-get_apicarto_commune.R | 46 happign-0.1.8/happign/tests/testthat/test-get_last_news.R | 7 happign-0.1.8/happign/tests/testthat/test-get_wfs.R | 206 - happign-0.1.8/happign/tests/testthat/test-get_wms_raster.R | 77 happign-0.1.8/happign/tests/testthat/test-utils.R |only happign-0.1.8/happign/tests/testthat/test-zzz.R |only happign-0.1.8/happign/tests/testthat/wfs_ecql_filter |only happign-0.1.8/happign/tests/testthat/wfs_empty |only happign-0.1.8/happign/tests/testthat/wfs_intersect |only happign-0.1.8/happign/vignettes/Getting_started-unnamed-chunk-6-1.png |binary happign-0.1.8/happign/vignettes/Getting_started-unnamed-chunk-7-1.png |binary happign-0.1.8/happign/vignettes/Getting_started-unnamed-chunk-8-1.png |only happign-0.1.8/happign/vignettes/Getting_started.Rmd | 75 happign-0.1.8/happign/vignettes/Getting_started.Rmd.orig | 58 happign-0.1.8/happign/vignettes/web_only/completion_of_ign_data_road_example.Rmd |only happign-0.1.8/happign/vignettes/web_only/happign_for_foresters.Rmd | 165 - 72 files changed, 1809 insertions(+), 1689 deletions(-)
Title: GLCM Textures of Raster Layers
Description: Calculates grey level co-occurrence matrix (GLCM) based texture measures (Hall-Beyer (2017) <https://prism.ucalgary.ca/bitstream/handle/1880/51900/texture%20tutorial%20v%203_0%20180206.pdf>; Haralick et al. (1973) <doi:10.1109/TSMC.1973.4309314>) of raster layers using a sliding rectangular window. It also includes functions to quantize a raster into grey levels as well as tabulate a glcm and calculate glcm texture metrics for a matrix.
Author: Alexander Ilich [aut, cre]
Maintainer: Alexander Ilich <ailich@usf.edu>
Diff between GLCMTextures versions 0.3.6 dated 2022-10-05 and 0.3.7 dated 2023-01-30
DESCRIPTION | 12 ++++++++---- MD5 | 10 +++++----- README.md | 40 ++++++++++++++++++++-------------------- src/Makevars | 2 +- src/Makevars.win | 2 +- src/glcm_cpp_functions.cpp | 4 ++-- 6 files changed, 37 insertions(+), 33 deletions(-)
Title: Database Preferences and Skyline Computation
Description: Routines to select and visualize the maxima for a given strict
partial order. This especially includes the computation of the Pareto
frontier, also known as (Top-k) Skyline operator (see Börzsönyi, et al.
(2001) <doi:10.1109/ICDE.2001.914855>), and some generalizations
known as database preferences (see Kießling (2002)
<doi:10.1016/B978-155860869-6/50035-4>).
Author: Patrick Roocks <mail@p-roocks.de>
Maintainer: Patrick Roocks <mail@p-roocks.de>
Diff between rPref versions 1.3 dated 2019-02-16 and 1.4.0 dated 2023-01-30
rPref-1.3/rPref/src/topk_setting.cpp |only rPref-1.3/rPref/src/topk_setting.h |only rPref-1.4.0/rPref/DESCRIPTION | 15 rPref-1.4.0/rPref/MD5 | 93 +-- rPref-1.4.0/rPref/NEWS | 9 rPref-1.4.0/rPref/R/base-pref-macros.r | 4 rPref-1.4.0/rPref/R/base-pref.r | 10 rPref-1.4.0/rPref/R/complex-pref.r | 14 rPref-1.4.0/rPref/R/general-pref.r | 6 rPref-1.4.0/rPref/R/pred-succ.r | 14 rPref-1.4.0/rPref/R/pref-eval.r | 22 rPref-1.4.0/rPref/R/rPref.r | 2 rPref-1.4.0/rPref/R/show-pref.r | 2 rPref-1.4.0/rPref/R/visualize.r | 30 - rPref-1.4.0/rPref/README.md |only rPref-1.4.0/rPref/build/vignette.rds |binary rPref-1.4.0/rPref/inst/doc/introduction.R | 28 - rPref-1.4.0/rPref/inst/doc/introduction.Rmd | 25 rPref-1.4.0/rPref/inst/doc/introduction.html | 665 ++++++++++++++++++++------ rPref-1.4.0/rPref/inst/doc/visualization.R | 26 - rPref-1.4.0/rPref/inst/doc/visualization.html | 521 ++++++++++++++++---- rPref-1.4.0/rPref/inst/test/test-algorithms.r | 2 rPref-1.4.0/rPref/inst/test/test-hasse.r | 6 rPref-1.4.0/rPref/inst/test/test-psel.r | 2 rPref-1.4.0/rPref/man/base_pref.Rd | 10 rPref-1.4.0/rPref/man/base_pref_macros.Rd | 4 rPref-1.4.0/rPref/man/complex_pref.Rd | 12 rPref-1.4.0/rPref/man/general_pref.Rd | 6 rPref-1.4.0/rPref/man/get_hasse_diag.Rd | 2 rPref-1.4.0/rPref/man/plot_btg.Rd | 59 +- rPref-1.4.0/rPref/man/pred_succ.Rd | 12 rPref-1.4.0/rPref/man/psel.Rd | 16 rPref-1.4.0/rPref/man/rPref.Rd | 3 rPref-1.4.0/rPref/man/show.query.Rd | 2 rPref-1.4.0/rPref/src/Makevars | 1 rPref-1.4.0/rPref/src/Makevars.win | 4 rPref-1.4.0/rPref/src/RcppExports.cpp | 37 - rPref-1.4.0/rPref/src/bnl.cpp | 226 +++----- rPref-1.4.0/rPref/src/bnl.h | 49 - rPref-1.4.0/rPref/src/hasse.cpp | 66 +- rPref-1.4.0/rPref/src/hasse.h | 11 rPref-1.4.0/rPref/src/pref-classes.cpp | 148 ++--- rPref-1.4.0/rPref/src/pref-classes.h | 110 +--- rPref-1.4.0/rPref/src/psel-par-top.cpp | 265 ++++------ rPref-1.4.0/rPref/src/psel-par.cpp | 109 +--- rPref-1.4.0/rPref/src/scalagon.cpp | 541 ++++++++++----------- rPref-1.4.0/rPref/src/scalagon.h | 58 -- rPref-1.4.0/rPref/src/topk-setting.cpp |only rPref-1.4.0/rPref/src/topk-setting.h |only rPref-1.4.0/rPref/vignettes/introduction.Rmd | 25 50 files changed, 1901 insertions(+), 1371 deletions(-)
Title: Convert Files to Parquet Format
Description: Collection of functions to get files in parquet format.
Parquet is a columnar storage file format <https://parquet.apache.org/>.
The files to convert can be of several formats
("csv", "RData", "rds", "RSQLite",
"json", "ndjson", "SAS", "SPSS"...).
Author: Damien Dotta [aut, cre]
Maintainer: Damien Dotta <damien.dotta@live.fr>
Diff between parquetize versions 0.5.0 dated 2023-01-13 and 0.5.1 dated 2023-01-30
parquetize-0.5.0/parquetize/R/duckdb_to_parquet.R |only parquetize-0.5.0/parquetize/man/duckdb_to_parquet.Rd |only parquetize-0.5.0/parquetize/tests/testthat/_snaps/duckdb_to_parquet.md |only parquetize-0.5.0/parquetize/tests/testthat/test-duckdb_to_parquet.R |only parquetize-0.5.1/parquetize/DESCRIPTION | 11 +-- parquetize-0.5.1/parquetize/MD5 | 18 ++--- parquetize-0.5.1/parquetize/NAMESPACE | 3 parquetize-0.5.1/parquetize/NEWS.md | 5 + parquetize-0.5.1/parquetize/README.md | 34 ++++------ parquetize-0.5.1/parquetize/inst/doc/aa-conversions.Rmd | 2 parquetize-0.5.1/parquetize/inst/doc/aa-conversions.html | 6 - parquetize-0.5.1/parquetize/vignettes/aa-conversions.Rmd | 2 12 files changed, 38 insertions(+), 43 deletions(-)
Title: Utilities for Working with Google APIs
Description: Provides utilities for working with Google APIs
<https://developers.google.com/apis-explorer>. This includes
functions and classes for handling common credential types and for
preparing, executing, and processing HTTP requests.
Author: Jennifer Bryan [aut, cre] ,
Craig Citro [aut],
Hadley Wickham [aut] ,
Google Inc [cph],
Posit, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between gargle versions 1.2.1 dated 2022-09-07 and 1.3.0 dated 2023-01-30
gargle-1.2.1/gargle/R/gargle-oauth-app.R |only gargle-1.2.1/gargle/R/oauth-app.R |only gargle-1.2.1/gargle/man/gargle_app.Rd |only gargle-1.2.1/gargle/tests/testthat/test-gce-token.R |only gargle-1.2.1/gargle/tests/testthat/test-oauth-app.R |only gargle-1.2.1/gargle/tests/testthat/test-registry.R |only gargle-1.3.0/gargle/DESCRIPTION | 22 gargle-1.3.0/gargle/LICENSE | 4 gargle-1.3.0/gargle/MD5 | 174 ++-- gargle-1.3.0/gargle/NAMESPACE | 10 gargle-1.3.0/gargle/NEWS.md | 90 ++ gargle-1.3.0/gargle/R/AuthState-class.R | 25 gargle-1.3.0/gargle/R/Gargle-class.R | 121 ++- gargle-1.3.0/gargle/R/compat-obj-type.R |only gargle-1.3.0/gargle/R/compat-purrr.R | 224 +++++- gargle-1.3.0/gargle/R/compat-types-check.R |only gargle-1.3.0/gargle/R/credential-function-registry.R | 241 +++++- gargle-1.3.0/gargle/R/credentials_byo_oauth2.R | 3 gargle-1.3.0/gargle/R/credentials_gce.R | 164 +++- gargle-1.3.0/gargle/R/credentials_user_oauth2.R | 22 gargle-1.3.0/gargle/R/gargle-oauth-client.R |only gargle-1.3.0/gargle/R/gargle-package.R | 21 gargle-1.3.0/gargle/R/oauth-cache.R | 8 gargle-1.3.0/gargle/R/oauth-init.R |only gargle-1.3.0/gargle/R/oauth-refresh.R | 18 gargle-1.3.0/gargle/R/request_retry.R | 2 gargle-1.3.0/gargle/R/roxygen-templates.R | 18 gargle-1.3.0/gargle/R/sysdata.rda |binary gargle-1.3.0/gargle/R/token-fetch.R | 12 gargle-1.3.0/gargle/README.md | 47 - 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Title: Extract and Tidy Canadian 'Hydrometric' Data
Description: Provides functions to access historical and real-time national 'hydrometric'
data from Water Survey of Canada data sources (<https://dd.weather.gc.ca/hydrometric/csv/> and
<https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>) and then applies tidy data principles.
Author: Sam Albers [aut, cre] ,
David Hutchinson [ctb],
Dewey Dunnington [ctb],
Ryan Whaley [ctb],
Province of British Columbia [cph],
Government of Canada [dtc],
Luke Winslow [rev] ,
Laura DeCicco [rev]
Maintainer: Sam Albers <sam.albers@gmail.com>
Diff between tidyhydat versions 0.5.8 dated 2022-11-29 and 0.5.9 dated 2023-01-30
DESCRIPTION | 8 MD5 | 202 +++++++-------- NEWS.md | 4 R/cli_style.R | 17 - R/data.R | 14 - R/download.R | 120 ++++----- R/hy-classes.R | 73 ++--- R/hy.R | 237 ++++++++--------- R/hy_annual_instant_peaks.R | 76 +++-- R/hy_annual_stats.R | 44 +-- R/hy_daily.R | 72 ++--- R/hy_daily_flows.R | 123 ++++----- R/hy_daily_levels.R | 102 ++++--- R/hy_db.R | 52 +-- R/hy_monthly_flows.R | 39 +- R/hy_monthly_levels.R | 78 +++-- R/hy_plot.R | 290 +++++++++++----------- R/hy_sed_daily_loads.R | 31 +- R/hy_sed_daily_suscon.R | 91 +++--- R/hy_sed_monthly_loads.R | 84 +++--- R/hy_sed_monthly_suscon.R | 87 +++--- R/hy_sed_samples.R | 52 +-- R/hy_sed_samples_psd.R | 48 +-- R/hy_stations.R | 51 +-- R/hy_stn_regulation.R | 31 +- R/realtime-classes.R | 12 R/realtime.R | 176 ++++++------- R/realtime_plot.R | 216 ++++++++-------- R/tidyhydat-package.R | 17 - R/utils-realtime.R | 77 ++--- R/utils-search.R | 37 +- R/utils.R | 182 ++++++------- R/zzz.R | 68 +++++ README.md | 32 +- data/allstations.rda |binary inst/doc/tidyhydat_an_introduction.Rmd | 57 ++-- inst/doc/tidyhydat_an_introduction.html | 59 ++-- inst/doc/tidyhydat_example_analysis.Rmd | 2 inst/doc/tidyhydat_example_analysis.html | 12 inst/doc/tidyhydat_hydat_db.Rmd | 2 inst/doc/tidyhydat_hydat_db.html | 4 man/figures/README-unnamed-chunk-7-1.png |binary man/hy_annual_instant_peaks.Rd | 4 man/hy_annual_stats.Rd | 8 man/hy_daily.Rd | 3 man/hy_daily_flows.Rd | 10 man/hy_daily_levels.Rd | 8 man/hy_monthly_flows.Rd | 8 man/hy_monthly_levels.Rd | 8 man/hy_reg_office_list.Rd | 1 man/hy_sed_daily_loads.Rd | 2 man/hy_sed_daily_suscon.Rd | 2 man/hy_sed_monthly_loads.Rd | 4 man/hy_sed_monthly_suscon.Rd | 2 man/hy_sed_samples.Rd | 2 man/hy_sed_samples_psd.Rd | 2 man/hy_src.Rd | 2 man/hy_stations.Rd | 5 man/hy_stn_data_coll.Rd | 2 man/hy_stn_data_range.Rd | 2 man/hy_stn_datum_conv.Rd | 2 man/hy_stn_regulation.Rd | 4 man/hy_stn_remarks.Rd | 2 man/hy_version.Rd | 1 man/pull_station_number.Rd | 4 man/realtime_add_local_datetime.Rd | 4 man/realtime_dd.Rd | 2 man/realtime_plot.Rd | 2 man/realtime_stations.Rd | 3 tests/testthat/helper-tidyhydat.R | 3 tests/testthat/test-hy-plot.R | 8 tests/testthat/test-hy_db.R | 31 +- tests/testthat/test_daily_mean.R | 6 tests/testthat/test_date_check.R | 6 tests/testthat/test_download_realtime.R | 28 +- tests/testthat/test_hy_annual_instant_peaks.R | 98 +++---- tests/testthat/test_hy_daily.R | 17 - tests/testthat/test_hy_daily_flows.R | 58 ++-- tests/testthat/test_hy_daily_levels.R | 93 +++---- tests/testthat/test_hy_monthly_flows.R | 93 +++---- tests/testthat/test_hy_monthly_levels.R | 93 +++---- tests/testthat/test_hy_sed_daily_loads.R | 93 +++---- tests/testthat/test_hy_sed_daily_suscon.R | 70 ++--- tests/testthat/test_hy_sed_monthly_loads.R | 93 +++---- tests/testthat/test_hy_sed_monthly_suscon.R | 93 +++---- tests/testthat/test_hy_sed_samples.R | 93 +++---- tests/testthat/test_hy_sed_samples_psd.R | 91 +++--- tests/testthat/test_hy_stations.R | 31 +- tests/testthat/test_hy_stn__.R | 65 ++-- tests/testthat/test_hy_stn_regulation.R | 81 ++---- tests/testthat/test_realtime_add_local_datetime.R | 12 tests/testthat/test_realtime_network.R | 11 tests/testthat/test_realtime_plot.R | 10 tests/testthat/test_station_choice.R | 12 tests/testthat/test_utils.R | 34 +- vignettes/tidyhydat_an_introduction.Rmd | 57 ++-- vignettes/tidyhydat_example_analysis.Rmd | 2 vignettes/tidyhydat_hydat_db.Rmd | 2 vignettes/vignette-fig-old_rec-1.png |binary vignettes/vignette-fig-old_rec_yr-1.png |binary vignettes/vignette-fig-pcrtile_plt-1.png |binary vignettes/vignette-fig-tile_plt-1.png |binary 102 files changed, 2265 insertions(+), 2197 deletions(-)
Title: Utilities for Scoring and Assessing Predictions
Description: Provides a collection of metrics and proper scoring rules
(Tilmann Gneiting & Adrian E Raftery (2007)
<doi:10.1198/016214506000001437>, Jordan, A., Krüger, F., & Lerch, S. (2019)
<doi:10.18637/jss.v090.i12>) within a consistent framework for
evaluation, comparison and visualisation of forecasts.
In addition to proper scoring rules, functions are provided to assess
bias, sharpness and calibration
(Sebastian Funk, Anton Camacho, Adam J. Kucharski, Rachel Lowe, Rosalind
M. Eggo, W. John Edmunds (2019) <doi:10.1371/journal.pcbi.1006785>) of
forecasts.
Several types of predictions (e.g. binary, discrete, continuous) which may
come in different formats (e.g. forecasts represented by predictive samples
or by quantiles of the predictive distribution) can be evaluated.
Scoring metrics can be used either through a convenient data.frame format,
or can be applied as individual functions in a vector / matrix format.
All functionality has been implemented with a focus on pe [...truncated...]
Author: Nikos Bosse [aut, cre] ,
Sam Abbott [aut] ,
Hugo Gruson [aut] ,
Johannes Bracher [ctb] ,
Sebastian Funk [ctb]
Maintainer: Nikos Bosse <nikosbosse@gmail.com>
Diff between scoringutils versions 1.0.1 dated 2022-08-16 and 1.1.0 dated 2023-01-30
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Title: Load Census TIGER/Line Shapefiles
Description: Download TIGER/Line shapefiles from the United States Census Bureau
(<https://www.census.gov/geographies/mapping-files/time-series/geo/tiger-line-file.html>)
and load into R as 'sf' objects.
Author: Kyle Walker [aut, cre],
Bob Rudis [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tigris versions 2.0 dated 2022-12-07 and 2.0.1 dated 2023-01-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/enumeration_units.R | 2 +- R/metro_areas.R | 26 ++++++++++++++++++++++---- man/urban_areas.Rd | 4 +++- 5 files changed, 34 insertions(+), 14 deletions(-)
Title: Optimal Test Design Approach to Fixed and Adaptive Test
Construction
Description: Uses the optimal test design approach by Birnbaum (1968, ISBN:9781593119348) and
van der Linden (2018) <doi:10.1201/9781315117430> to construct fixed, adaptive, and parallel tests.
Supports the following mixed-integer programming (MIP) solver packages: 'Rsymphony',
'gurobi', 'lpSolve', and 'Rglpk'. The 'gurobi' package is not available from CRAN; see <https://www.gurobi.com/downloads/>.
Author: Seung W. Choi [aut, cre] ,
Sangdon Lim [aut]
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between TestDesign versions 1.4.0 dated 2022-12-17 and 1.5.1 dated 2023-01-30
DESCRIPTION | 10 MD5 | 63 +- NAMESPACE | 45 + NEWS.md | 7 R/RcppExports.R | 270 +++++++++++ R/cpp_core_documents.r | 98 +++- R/other_functions.R | 6 R/shadow_functions.R | 26 - R/shadowtest_functions.R | 214 +++++++-- R/solver_functions.R | 50 +- R/xdata_functions.R | 54 -- inst/doc/constraints.R | 42 - inst/doc/constraints.Rmd | 42 - man/a_to_alpha.Rd |only man/e_item.Rd | 29 + man/h_item.Rd | 29 + man/info_item.Rd | 98 ++++ man/j_item.Rd | 29 + man/p_item.Rd | 41 + src/RcppExports.cpp | 655 +++++++++++++++++++++++++++++ src/expected_score.cpp | 49 ++ src/expected_score.h | 21 src/hessian.cpp | 82 +++ src/hessian.h | 25 + src/item_information.cpp | 490 +++++++++++++++++++++ src/item_information.h | 137 ++++++ src/item_probability.cpp | 161 +++++++ src/item_probability.h | 42 + src/jacobian.cpp | 65 ++ src/jacobian.h | 25 + tests/testthat/test_mixed_adaptive.r |only tests/testthat/test_multidimensional.R |only tests/testthat/test_partitioning_methods.r | 13 vignettes/constraints.Rmd | 42 - 34 files changed, 2684 insertions(+), 276 deletions(-)
Title: Multiscale Change-Point Inference
Description: Allows fitting of step-functions to univariate serial data where neither the number of jumps nor their positions is known by implementing the multiscale regression estimators SMUCE (K. Frick, A. Munk and H. Sieling, 2014) <doi:10.1111/rssb.12047> and HSMUCE (F. Pein, H. Sieling and A. Munk, 2017) <doi:10.1111/rssb.12202>. In addition, confidence intervals for the change-point locations and bands for the unknown signal can be obtained.
Author: Pein Florian [aut, cre],
Thomas Hotz [aut],
Hannes Sieling [aut],
Timo Aspelmeier [ctb]
Maintainer: Pein Florian <f.pein@lancaster.ac.uk>
Diff between stepR versions 2.1-3 dated 2022-05-05 and 2.1-4 dated 2023-01-30
ChangeLog | 4 ++++ DESCRIPTION | 6 +++--- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/StepR.pdf |binary src/Step.cpp | 3 ++- 6 files changed, 14 insertions(+), 9 deletions(-)
Title: 'REDCap' Data Management
Description: Access and manage 'REDCap' data. 'REDCap' (Research Electronic Data CAPture; <https://projectredcap.org>) is a web application for building and managing online surveys and databases developed at Vanderbilt University. The API allows users to programmatic access data and project meta data (such as the data dictionary) from the web. This package allows us to read 'REDCap' data, exported or using an API connection, identify missing or extreme values, identify missing 'REDCap' events in each observation, do a follow-up of the queries initially identified and it also facilitates the process of data management.
Author: Joao Carmezim [aut, cre],
Judith Penafiel [aut],
Pau Satorra [aut],
Esther Garcia [aut],
Natalia Pallares [aut],
Cristian Tebe [aut]
Maintainer: Joao Carmezim <ubidi@idibell.cat>
Diff between REDCapDM versions 0.1.0 dated 2022-12-22 and 0.1.1 dated 2023-01-30
REDCapDM-0.1.0/REDCapDM/man/dades_events.Rd |only REDCapDM-0.1.0/REDCapDM/man/dades_forms.Rd |only REDCapDM-0.1.1/REDCapDM/DESCRIPTION | 7 REDCapDM-0.1.1/REDCapDM/MD5 | 50 REDCapDM-0.1.1/REDCapDM/NEWS.md | 7 REDCapDM-0.1.1/REDCapDM/R/REDCapDM.R | 10 REDCapDM-0.1.1/REDCapDM/R/check_queries.R | 12 REDCapDM-0.1.1/REDCapDM/R/covican.R | 16 REDCapDM-0.1.1/REDCapDM/R/rd_event.R | 2 REDCapDM-0.1.1/REDCapDM/R/rd_query.R | 12 REDCapDM-0.1.1/REDCapDM/R/rd_transform.R | 10 REDCapDM-0.1.1/REDCapDM/R/redcap_data.R | 4 REDCapDM-0.1.1/REDCapDM/R/utils-transform.R | 4 REDCapDM-0.1.1/REDCapDM/build/vignette.rds |binary REDCapDM-0.1.1/REDCapDM/data/covican.rda |binary REDCapDM-0.1.1/REDCapDM/inst/doc/REDCapDM.R | 405 -- REDCapDM-0.1.1/REDCapDM/inst/doc/REDCapDM.Rmd | 654 +-- REDCapDM-0.1.1/REDCapDM/inst/doc/REDCapDM.html | 1948 ++++++---- REDCapDM-0.1.1/REDCapDM/man/REDCapDM.Rd | 10 REDCapDM-0.1.1/REDCapDM/man/check_queries.Rd | 12 REDCapDM-0.1.1/REDCapDM/man/covican.Rd | 16 REDCapDM-0.1.1/REDCapDM/man/rd_event.Rd | 2 REDCapDM-0.1.1/REDCapDM/man/rd_query.Rd | 12 REDCapDM-0.1.1/REDCapDM/man/redcap_data.Rd | 6 REDCapDM-0.1.1/REDCapDM/man/split_event.Rd |only REDCapDM-0.1.1/REDCapDM/man/split_form.Rd |only REDCapDM-0.1.1/REDCapDM/vignettes/REDCapDM.Rmd | 654 +-- REDCapDM-0.1.1/REDCapDM/vignettes/files/COVICAN_instruments.csv | 12 28 files changed, 2236 insertions(+), 1629 deletions(-)
Title: Tools for Analysing and Visualising Viva Insights Data
Description: Opinionated functions that enable easier and faster
analysis of Viva Insights data. There are three main types of functions in 'wpa':
(i) Standard functions create a 'ggplot' visual or a summary table based on a specific
Viva Insights metric; (2) Report Generation functions generate HTML reports on
a specific analysis area, e.g. Collaboration; (3) Other miscellaneous functions cover
more specific applications (e.g. Subject Line text mining) of Viva Insights data.
This package adheres to 'tidyverse' principles and works well with the pipe syntax.
'wpa' is built with the beginner-to-intermediate R users in mind, and is optimised for
simplicity.
Author: Martin Chan [aut, cre],
Carlos Morales [aut],
Mark Powers [ctb],
Ainize Cidoncha [ctb],
Rosamary Ochoa Vargas [ctb],
Tannaz Sattari [ctb],
Lucas Hogner [ctb],
Jasminder Thind [ctb],
Simone Liebal [ctb],
Aleksey Ashikhmin [ctb],
Ellen Trinklein [ctb], [...truncated...]
Maintainer: Martin Chan <martin.chan@microsoft.com>
Diff between wpa versions 1.8.0 dated 2022-07-05 and 1.8.1 dated 2023-01-30
DESCRIPTION | 6 MD5 | 12 - NEWS.md | 288 +++++++++++++++++++++---------------------- R/workpatterns_classify_bw.R | 6 README.md | 3 man/pad2.Rd | 34 ++--- man/plot_hourly_pat.Rd | 112 ++++++++-------- 7 files changed, 233 insertions(+), 228 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau
APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's
geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping
and spatial analysis.
Author: Kyle Walker [aut, cre],
Matt Herman [aut],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tidycensus versions 1.3.1 dated 2023-01-09 and 1.3.2 dated 2023-01-30
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/acs.R | 12 +++++------- R/fips_codes.R | 4 ++-- R/load_data.R | 2 +- R/pums.R | 2 +- data/pums_variables.rda |binary man/get_pums.Rd | 2 +- man/pums_variables.Rd | 6 +++--- 9 files changed, 25 insertions(+), 27 deletions(-)
Title: Fast R and C++ Access to NIfTI Images
Description: Provides very fast read and write access to images stored in the
NIfTI-1, NIfTI-2 and ANALYZE-7.5 formats, with seamless synchronisation
of in-memory image objects between compiled C and interpreted R code. Also
provides a simple image viewer, and a C/C++ API that can be used by other
packages. Not to be confused with 'RNiftyReg', which performs image
registration and applies spatial transformations.
Author: Jon Clayden [cre, aut] ,
Bob Cox [aut],
Mark Jenkinson [aut],
Matt Hall [ctb],
Rick Reynolds [ctb],
Kate Fissell [ctb],
Jean-loup Gailly [cph],
Mark Adler [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNifti versions 1.4.4 dated 2023-01-16 and 1.4.5 dated 2023-01-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 6 ++++++ inst/include/RNifti/NiftiImage.h | 9 ++++++++- 4 files changed, 21 insertions(+), 8 deletions(-)
Title: Subset Partitioning via Anticlustering
Description: The method of anticlustering partitions a pool of elements
into groups (i.e., anticlusters) with the goal of maximizing
between-group similarity or within-group heterogeneity. The
anticlustering approach thereby reverses the logic of cluster analysis
that strives for high within-group homogeneity and low similarity of
the different groups. Computationally, anticlustering is accomplished
by maximizing instead of minimizing a clustering objective function,
such as the intra-cluster variance (used in k-means clustering) or the
sum of pairwise distances within clusters. The function
anticlustering() implements exact and heuristic anticlustering
algorithms as described in Papenberg and Klau (2021;
<doi:10.1037/met0000301>). The exact algorithms require that the GNU
linear programming kit (<https://www.gnu.org/software/glpk/glpk.html>)
is available and the R package 'Rglpk'
(<https://cran.R-project.org/package=Rglpk>) is installed. A
bicriterion anticlustering method prop [...truncated...]
Author: Martin Papenberg [aut, cre] ,
Meik Michalke [ctb] ,
Gunnar W. Klau [ths],
Juliane V. Nagel [ctb] ,
Martin Breuer [ctb] ,
Marie L. Schaper [ctb]
Maintainer: Martin Papenberg <martin.papenberg@hhu.de>
Diff between anticlust versions 0.6.1 dated 2021-12-07 and 0.6.3 dated 2023-01-30
anticlust-0.6.1/anticlust/R/objective-mean-sd.R |only anticlust-0.6.1/anticlust/man/kplus_objective.Rd |only anticlust-0.6.1/anticlust/man/mean_sd_obj.Rd |only anticlust-0.6.3/anticlust/DESCRIPTION | 53 +-- anticlust-0.6.3/anticlust/LICENSE | 2 anticlust-0.6.3/anticlust/MD5 | 45 +- anticlust-0.6.3/anticlust/NAMESPACE | 4 anticlust-0.6.3/anticlust/R/generate-partitions.R | 2 anticlust-0.6.3/anticlust/R/objective-diversity.R | 2 anticlust-0.6.3/anticlust/R/objective-kplus.R | 16 anticlust-0.6.3/anticlust/R/objective-variance.R | 2 anticlust-0.6.3/anticlust/R/wrapper-anticlustering.R | 161 +++++----- anticlust-0.6.3/anticlust/R/wrapper-clustering.R | 2 anticlust-0.6.3/anticlust/R/wrapper-k-plus-anticlustering.R |only anticlust-0.6.3/anticlust/build/vignette.rds |binary anticlust-0.6.3/anticlust/inst/doc/stimulus-selection.html | 56 +-- anticlust-0.6.3/anticlust/man/anticlustering.Rd | 143 ++++---- anticlust-0.6.3/anticlust/man/balanced_clustering.Rd | 2 anticlust-0.6.3/anticlust/man/diversity_objective.Rd | 2 anticlust-0.6.3/anticlust/man/figures/clustering-1.png |binary anticlust-0.6.3/anticlust/man/figures/matching-1.png |binary anticlust-0.6.3/anticlust/man/generate_partitions.Rd | 2 anticlust-0.6.3/anticlust/man/kplus_anticlustering.Rd |only anticlust-0.6.3/anticlust/man/variance_objective.Rd | 2 anticlust-0.6.3/anticlust/src/bicriterion_iterated_local_search_call.c | 2 anticlust-0.6.3/anticlust/src/header.h | 2 26 files changed, 267 insertions(+), 233 deletions(-)
Title: Search Download and Handle Data from Copernicus Marine Service
Information
Description: Subset and download data from EU Copernicus Marine
Service Information: <https://data.marine.copernicus.eu>.
Import data on the oceans physical and biogeochemical state
from Copernicus into R without the need of external software.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between CopernicusMarine versions 0.0.3 dated 2023-01-18 and 0.0.6 dated 2023-01-30
DESCRIPTION | 8 ++-- MD5 | 47 +++++++++++++------------ NEWS.md | 12 +++++- R/copernicus_cite_product.r | 3 + R/copernicus_download_motu.r | 68 ++++++++++++++++++++++--------------- R/copernicus_product_details.r | 11 ++++- R/copernicus_product_metadata.r | 12 ++++-- R/copernicus_products_list.r | 12 ++++-- R/ftp.r | 35 +++++++++++-------- R/generics.r |only R/wms.r | 29 ++++++++++----- README.md | 13 ++++--- man/addCopernicusWMSTiles.Rd | 20 ++++++---- man/copernicus_cite_product.Rd | 2 - man/copernicus_download_motu.Rd | 3 + man/copernicus_ftp.Rd | 4 +- man/copernicus_product_metadata.Rd | 3 + man/copernicus_products_list.Rd | 3 + man/copernicus_wms2geotiff.Rd | 3 + man/copernicus_wms_details.Rd | 3 + man/figures/README-leaflet-1.png |binary tests/testthat/helper.r | 25 ++++++++----- tests/testthat/test_ftp.r | 3 + tests/testthat/test_motu.r | 43 +++++++++++++---------- tests/testthat/test_wms.r | 21 +++-------- 25 files changed, 232 insertions(+), 151 deletions(-)
More information about CopernicusMarine at CRAN
Permanent link
Title: Scott-Knott for Forensic Glass Analysis
Description: In forensics, it is common and effective practice to analyse glass fragments from the scene and suspects
to gain evidence of placing a suspect at the crime scene.
This kind of analysis involves comparing the physical and chemical attributes of glass fragments that exist on both the
person and at the crime scene, and assessing the significance in a likeness that they share.
The package implements the Scott-Knott Modification 2 algorithm (SKM2) (Christopher M. Triggs and
James M. Curran and John S. Buckleton and Kevan A.J. Walsh (1997) <doi:10.1016/S0379-0738(96)02037-3>
"The grouping problem in forensic glass analysis: a divisive approach", Forensic Science International, 85(1), 1--14)
for small sample glass fragment analysis using the refractive index (ri) of a set of glass samples.
It also includes an experimental multivariate analog to the Scott-Knott algorithm for similar analysis on glass samples
with multiple chemical concentration variables and multiple samples of the same [...truncated...]
Author: Toby Hayward [aut, cre] ,
James Curran [aut, ctb] ,
Lewis Kendall-Jones [ctb]
Maintainer: Toby Hayward <tobyhayward13@gmail.com>
Diff between SK4FGA versions 0.1.0 dated 2023-01-25 and 0.1.1 dated 2023-01-30
DESCRIPTION | 8 +++++--- MD5 | 2 +- 2 files changed, 6 insertions(+), 4 deletions(-)
Title: Basic Functions to Investigate Metabolomics Data Matrices
Description: A set of functions to investigate raw data from (metabol)omics experiments intended to be used on a raw data matrix, i.e. following peak picking and signal deconvolution. Functions can be used to normalize data, detect biomarkers and perform sample classification. A detailed description of best practice usage may be found in the publication <https://link.springer.com/protocol/10.1007/978-1-4939-7819-9_20>.
Author: Jan Lisec [aut, cre]
Maintainer: Jan Lisec <jan.lisec@bam.de>
Diff between MetabolomicsBasics versions 1.3 dated 2022-10-01 and 1.4 dated 2023-01-30
MetabolomicsBasics-1.3/MetabolomicsBasics/R/met-data.R |only MetabolomicsBasics-1.3/MetabolomicsBasics/R/raw-data.R |only MetabolomicsBasics-1.3/MetabolomicsBasics/R/sam-data.R |only MetabolomicsBasics-1.4/MetabolomicsBasics/DESCRIPTION | 20 +-- MetabolomicsBasics-1.4/MetabolomicsBasics/MD5 | 62 +++++----- MetabolomicsBasics-1.4/MetabolomicsBasics/NAMESPACE | 8 + MetabolomicsBasics-1.4/MetabolomicsBasics/R/AdjustSymbols.R | 8 - MetabolomicsBasics-1.4/MetabolomicsBasics/R/CheckForOutliers.R | 4 MetabolomicsBasics-1.4/MetabolomicsBasics/R/ClassificationCV.R | 9 - MetabolomicsBasics-1.4/MetabolomicsBasics/R/ClassificationWrapper.R | 29 ++++ MetabolomicsBasics-1.4/MetabolomicsBasics/R/MBoxplot.R | 2 MetabolomicsBasics-1.4/MetabolomicsBasics/R/MetaboliteANOVA.R | 4 MetabolomicsBasics-1.4/MetabolomicsBasics/R/MetabolomicsBasics-data.R |only MetabolomicsBasics-1.4/MetabolomicsBasics/R/PlotMetabolitePCA.R | 8 - MetabolomicsBasics-1.4/MetabolomicsBasics/R/PlotPValueHist.R | 6 MetabolomicsBasics-1.4/MetabolomicsBasics/R/ReplaceMissingValues.R | 4 MetabolomicsBasics-1.4/MetabolomicsBasics/R/RestrictedPCA.R | 4 MetabolomicsBasics-1.4/MetabolomicsBasics/R/sumformula_from_CAS.R |only MetabolomicsBasics-1.4/MetabolomicsBasics/R/unique_labels.R | 3 MetabolomicsBasics-1.4/MetabolomicsBasics/R/unique_subformula_masses.R |only MetabolomicsBasics-1.4/MetabolomicsBasics/man/AdjustSymbols.Rd | 8 - MetabolomicsBasics-1.4/MetabolomicsBasics/man/CheckForOutliers.Rd | 4 MetabolomicsBasics-1.4/MetabolomicsBasics/man/ClassificationCV.Rd | 2 MetabolomicsBasics-1.4/MetabolomicsBasics/man/ClassificationWrapper.Rd | 8 - MetabolomicsBasics-1.4/MetabolomicsBasics/man/MBoxplot.Rd | 2 MetabolomicsBasics-1.4/MetabolomicsBasics/man/MetaboliteANOVA.Rd | 4 MetabolomicsBasics-1.4/MetabolomicsBasics/man/PlotMetabolitePCA.Rd | 8 - MetabolomicsBasics-1.4/MetabolomicsBasics/man/PlotPValueHist.Rd | 6 MetabolomicsBasics-1.4/MetabolomicsBasics/man/ReplaceMissingValues.Rd | 4 MetabolomicsBasics-1.4/MetabolomicsBasics/man/RestrictedPCA.Rd | 4 MetabolomicsBasics-1.4/MetabolomicsBasics/man/met.Rd | 14 -- MetabolomicsBasics-1.4/MetabolomicsBasics/man/raw.Rd | 48 +++---- MetabolomicsBasics-1.4/MetabolomicsBasics/man/sam.Rd | 48 +++---- MetabolomicsBasics-1.4/MetabolomicsBasics/man/sumformula_from_CAS.Rd |only MetabolomicsBasics-1.4/MetabolomicsBasics/man/unique_labels.Rd | 3 MetabolomicsBasics-1.4/MetabolomicsBasics/man/unique_subformula_masses.Rd |only 36 files changed, 179 insertions(+), 155 deletions(-)
More information about MetabolomicsBasics at CRAN
Permanent link
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut] ,
Vincent Arel-Bundock [aut, ctb]
,
Alex Hayes [rev] ,
Grant McDermott [ [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between insight versions 0.18.8 dated 2022-11-24 and 0.19.0 dated 2023-01-30
insight-0.18.8/insight/tests/testthat/helper-requiet.R |only insight-0.19.0/insight/DESCRIPTION | 24 insight-0.19.0/insight/MD5 | 393 +- insight-0.19.0/insight/NAMESPACE | 42 insight-0.19.0/insight/NEWS.md | 46 insight-0.19.0/insight/R/all_equal_models.R | 11 insight-0.19.0/insight/R/clean_names.R | 8 insight-0.19.0/insight/R/colour_tools.R | 8 insight-0.19.0/insight/R/compute_variances.R | 11 insight-0.19.0/insight/R/export_table.R | 18 insight-0.19.0/insight/R/find_algorithm.R | 6 insight-0.19.0/insight/R/find_formula.R | 75 insight-0.19.0/insight/R/find_parameters.R | 8 insight-0.19.0/insight/R/find_parameters_other.R | 2 insight-0.19.0/insight/R/find_predictors.R | 4 insight-0.19.0/insight/R/find_response.R | 68 insight-0.19.0/insight/R/find_statistic.R | 9 insight-0.19.0/insight/R/find_terms.R | 10 insight-0.19.0/insight/R/format_message.R | 4 insight-0.19.0/insight/R/get_data.R | 1148 +++++- insight-0.19.0/insight/R/get_datagrid.R | 90 insight-0.19.0/insight/R/get_deviance.R | 2 insight-0.19.0/insight/R/get_df.R | 18 insight-0.19.0/insight/R/get_loglikelihood.R | 24 insight-0.19.0/insight/R/get_modelmatrix.R | 34 insight-0.19.0/insight/R/get_parameters.R | 12 insight-0.19.0/insight/R/get_parameters_bayesian.R | 22 insight-0.19.0/insight/R/get_parameters_gam.R | 20 insight-0.19.0/insight/R/get_predicted.R | 10 insight-0.19.0/insight/R/get_predicted_args.R | 25 insight-0.19.0/insight/R/get_predicted_ci_zeroinflated.R | 2 insight-0.19.0/insight/R/get_predicted_gam.R | 17 insight-0.19.0/insight/R/get_predicted_mixed.R | 1 insight-0.19.0/insight/R/get_predicted_ordinal.R | 22 insight-0.19.0/insight/R/get_predicted_se.R | 25 insight-0.19.0/insight/R/get_predicted_zeroinfl.R | 2 insight-0.19.0/insight/R/get_predictors.R | 4 insight-0.19.0/insight/R/get_random.R | 4 insight-0.19.0/insight/R/get_response.R | 59 insight-0.19.0/insight/R/get_statistic.R | 69 insight-0.19.0/insight/R/get_transformation.R | 4 insight-0.19.0/insight/R/get_varcov.R | 12 insight-0.19.0/insight/R/get_weights.R | 4 insight-0.19.0/insight/R/is_model.R | 5 insight-0.19.0/insight/R/is_model_supported.R | 4 insight-0.19.0/insight/R/link_function.R | 15 insight-0.19.0/insight/R/link_inverse.R | 15 insight-0.19.0/insight/R/model_info.R | 24 insight-0.19.0/insight/R/n_grouplevels.R |only insight-0.19.0/insight/R/n_obs.R | 22 insight-0.19.0/insight/R/text_remove_backticks.R | 8 insight-0.19.0/insight/R/utilities.R | 8 insight-0.19.0/insight/R/utils_compact.R | 2 insight-0.19.0/insight/R/utils_get_data.R | 111 insight-0.19.0/insight/R/utils_model_info.R | 40 insight-0.19.0/insight/README.md | 189 - insight-0.19.0/insight/inst/WORDLIST |only insight-0.19.0/insight/inst/doc/display.R | 6 insight-0.19.0/insight/inst/doc/display.Rmd | 6 insight-0.19.0/insight/inst/doc/display.html | 304 - insight-0.19.0/insight/man/find_terms.Rd | 4 insight-0.19.0/insight/man/get_data.Rd | 36 insight-0.19.0/insight/man/get_datagrid.Rd | 6 insight-0.19.0/insight/man/get_response.Rd | 9 insight-0.19.0/insight/man/model_info.Rd | 1 insight-0.19.0/insight/man/n_grouplevels.Rd |only insight-0.19.0/insight/tests/testthat/helper.R |only insight-0.19.0/insight/tests/testthat/test-BayesFactorBF.R | 778 ++-- insight-0.19.0/insight/tests/testthat/test-FE-formula.R | 174 - insight-0.19.0/insight/tests/testthat/test-GLMMadaptive.R | 44 insight-0.19.0/insight/tests/testthat/test-Gam2.R | 6 insight-0.19.0/insight/tests/testthat/test-LORgee.R | 6 insight-0.19.0/insight/tests/testthat/test-MCMCglmm.R | 27 insight-0.19.0/insight/tests/testthat/test-afex_aov.R | 2 insight-0.19.0/insight/tests/testthat/test-all_models_equal.R | 2 insight-0.19.0/insight/tests/testthat/test-aovlist.R | 270 - 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insight-0.19.0/insight/tests/testthat/test-get_datagrid.R | 159 insight-0.19.0/insight/tests/testthat/test-get_deviance.R | 2 insight-0.19.0/insight/tests/testthat/test-get_loglikelihood.R | 21 insight-0.19.0/insight/tests/testthat/test-get_modelmatrix.R | 18 insight-0.19.0/insight/tests/testthat/test-get_predicted.R | 22 insight-0.19.0/insight/tests/testthat/test-get_priors.R | 2 insight-0.19.0/insight/tests/testthat/test-get_residuals.R | 8 insight-0.19.0/insight/tests/testthat/test-get_variance.R | 30 insight-0.19.0/insight/tests/testthat/test-get_weights.R | 4 insight-0.19.0/insight/tests/testthat/test-glm.R | 37 insight-0.19.0/insight/tests/testthat/test-glm.nb.R | 2 insight-0.19.0/insight/tests/testthat/test-glmmTMB.R | 92 insight-0.19.0/insight/tests/testthat/test-glmrob_base.R | 16 insight-0.19.0/insight/tests/testthat/test-gls.R | 8 insight-0.19.0/insight/tests/testthat/test-gmnl.R | 27 insight-0.19.0/insight/tests/testthat/test-has_intercept.R | 2 insight-0.19.0/insight/tests/testthat/test-htest.R | 214 - 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insight-0.19.0/insight/tests/testthat/test-speedglm.R | 42 insight-0.19.0/insight/tests/testthat/test-speedlm.R | 8 insight-0.19.0/insight/tests/testthat/test-standardize_names.R | 9 insight-0.19.0/insight/tests/testthat/test-survey.R | 10 insight-0.19.0/insight/tests/testthat/test-survfit.R | 8 insight-0.19.0/insight/tests/testthat/test-survreg.R | 8 insight-0.19.0/insight/tests/testthat/test-tidymodels.R | 9 insight-0.19.0/insight/tests/testthat/test-tobit.R | 4 insight-0.19.0/insight/tests/testthat/test-truncreg.R | 7 insight-0.19.0/insight/tests/testthat/test-utilities.R | 53 insight-0.19.0/insight/tests/testthat/test-vgam.R | 6 insight-0.19.0/insight/tests/testthat/test-vglm.R | 12 insight-0.19.0/insight/tests/testthat/test-zeroinfl.R | 6 insight-0.19.0/insight/vignettes/display.Rmd | 6 201 files changed, 6362 insertions(+), 5225 deletions(-)
Title: Neat Data for Presentation
Description: Utilities for unambiguous, neat and legible
representation of data (date, time stamp, numbers, percentages and strings)
for presentation of analysis , aiming for elegance and consistency.
The purpose of this package is to format data, that is better
for presentation and any automation jobs that reports numbers.
Author: Shivaprakash Suresh [aut, cre, cph]
Maintainer: Shivaprakash Suresh <dswithai@gmail.com>
Diff between neatR versions 0.1.0 dated 2023-01-26 and 0.1.1 dated 2023-01-30
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/src.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', 'Snowflake', 'Spark', and 'SQLite'). Also includes support for
fetching data as 'Andromeda' objects. Uses either 'Java Database Connectivity' ('JDBC') or other DB I drivers to connect to databases.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] ,
PostgreSQL Global Development Group [cph] ,
Oracle Inc. [cph] ,
Amazon Inc. [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 5.1.0 dated 2022-09-23 and 6.0.0 dated 2023-01-30
DatabaseConnector-5.1.0/DatabaseConnector/man/DatabaseConnectorResult-class.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/DESCRIPTION | 22 DatabaseConnector-6.0.0/DatabaseConnector/MD5 | 144 - DatabaseConnector-6.0.0/DatabaseConnector/NAMESPACE | 18 DatabaseConnector-6.0.0/DatabaseConnector/NEWS.md | 38 DatabaseConnector-6.0.0/DatabaseConnector/R/Andromeda.R | 163 - DatabaseConnector-6.0.0/DatabaseConnector/R/BulkLoad.R | 6 DatabaseConnector-6.0.0/DatabaseConnector/R/Compression.R | 4 DatabaseConnector-6.0.0/DatabaseConnector/R/Connect.R | 984 +++++----- DatabaseConnector-6.0.0/DatabaseConnector/R/CtasHack.R | 11 DatabaseConnector-6.0.0/DatabaseConnector/R/DBI.R | 441 +++- DatabaseConnector-6.0.0/DatabaseConnector/R/DataHash.R |only DatabaseConnector-6.0.0/DatabaseConnector/R/DatabaseConnector.R | 79 DatabaseConnector-6.0.0/DatabaseConnector/R/DbiDateFunctions.R |only DatabaseConnector-6.0.0/DatabaseConnector/R/Drivers.R | 39 DatabaseConnector-6.0.0/DatabaseConnector/R/HelperFunctions.R |only DatabaseConnector-6.0.0/DatabaseConnector/R/InsertTable.R | 78 DatabaseConnector-6.0.0/DatabaseConnector/R/ListTables.R | 157 + DatabaseConnector-6.0.0/DatabaseConnector/R/RStudio.R | 32 DatabaseConnector-6.0.0/DatabaseConnector/R/Sql.R | 211 +- DatabaseConnector-6.0.0/DatabaseConnector/README.md | 9 DatabaseConnector-6.0.0/DatabaseConnector/build/vignette.rds |binary DatabaseConnector-6.0.0/DatabaseConnector/inst/csv/jarChecksum.txt |only DatabaseConnector-6.0.0/DatabaseConnector/inst/doc/Connecting.pdf |binary DatabaseConnector-6.0.0/DatabaseConnector/inst/doc/DbiAndDbplyr.R |only DatabaseConnector-6.0.0/DatabaseConnector/inst/doc/DbiAndDbplyr.Rmd |only DatabaseConnector-6.0.0/DatabaseConnector/inst/doc/DbiAndDbplyr.pdf |only DatabaseConnector-6.0.0/DatabaseConnector/inst/doc/Querying.R | 39 DatabaseConnector-6.0.0/DatabaseConnector/inst/doc/Querying.Rmd | 46 DatabaseConnector-6.0.0/DatabaseConnector/inst/doc/Querying.pdf |binary DatabaseConnector-6.0.0/DatabaseConnector/inst/java/DatabaseConnector.jar |binary DatabaseConnector-6.0.0/DatabaseConnector/java/org/ohdsi/databaseConnector/BatchedInsert.java | 10 DatabaseConnector-6.0.0/DatabaseConnector/java/org/ohdsi/databaseConnector/BatchedQuery.java | 10 DatabaseConnector-6.0.0/DatabaseConnector/java/org/ohdsi/databaseConnector/DebugRtoSqlTranslation.java |only DatabaseConnector-6.0.0/DatabaseConnector/java/org/ohdsi/databaseConnector/JarChecksum.java |only DatabaseConnector-6.0.0/DatabaseConnector/java/org/ohdsi/databaseConnector/RFunctionToTranslate.java |only DatabaseConnector-6.0.0/DatabaseConnector/java/org/ohdsi/databaseConnector/RtoSqlTranslator.java |only DatabaseConnector-6.0.0/DatabaseConnector/man/DatabaseConnector-package.Rd | 2 DatabaseConnector-6.0.0/DatabaseConnector/man/DatabaseConnectorConnection-class.Rd | 130 + DatabaseConnector-6.0.0/DatabaseConnector/man/DatabaseConnectorDbiConnection-class.Rd | 2 DatabaseConnector-6.0.0/DatabaseConnector/man/DatabaseConnectorDbiResult-class.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/DatabaseConnectorJdbcConnection-class.Rd | 2 DatabaseConnector-6.0.0/DatabaseConnector/man/DatabaseConnectorJdbcResult-class.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/Microsoft-SQL-Server-class.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/assertTempEmulationSchemaSet.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/computeDataHash.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/connect.Rd | 219 +- DatabaseConnector-6.0.0/DatabaseConnector/man/createConnectionDetails.Rd | 230 +- DatabaseConnector-6.0.0/DatabaseConnector/man/createDbiConnectionDetails.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/dateAdd.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/dateDiff.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/dateFromParts.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/day.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/dbConnect-DatabaseConnectorDriver-method.Rd | 6 DatabaseConnector-6.0.0/DatabaseConnector/man/dbGetInfo-DatabaseConnectorDriver-method.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/dbms.Rd | 59 DatabaseConnector-6.0.0/DatabaseConnector/man/disconnect.Rd | 3 DatabaseConnector-6.0.0/DatabaseConnector/man/downloadJdbcDrivers.Rd | 26 DatabaseConnector-6.0.0/DatabaseConnector/man/dropEmulatedTempTables.Rd | 3 DatabaseConnector-6.0.0/DatabaseConnector/man/eoMonth.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/executeSql.Rd | 9 DatabaseConnector-6.0.0/DatabaseConnector/man/existsTable.Rd | 5 DatabaseConnector-6.0.0/DatabaseConnector/man/extractQueryTimes.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/getTableNames.Rd | 11 DatabaseConnector-6.0.0/DatabaseConnector/man/inDatabaseSchema.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/insertTable.Rd | 14 DatabaseConnector-6.0.0/DatabaseConnector/man/jdbcDrivers.Rd | 18 DatabaseConnector-6.0.0/DatabaseConnector/man/lowLevelExecuteSql.Rd | 3 DatabaseConnector-6.0.0/DatabaseConnector/man/lowLevelQuerySql.Rd | 5 DatabaseConnector-6.0.0/DatabaseConnector/man/lowLevelQuerySqlToAndromeda.Rd | 33 DatabaseConnector-6.0.0/DatabaseConnector/man/month.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/querySql.Rd | 7 DatabaseConnector-6.0.0/DatabaseConnector/man/querySqlToAndromeda.Rd | 27 DatabaseConnector-6.0.0/DatabaseConnector/man/renderTranslateExecuteSql.Rd | 11 DatabaseConnector-6.0.0/DatabaseConnector/man/renderTranslateQueryApplyBatched.Rd | 14 DatabaseConnector-6.0.0/DatabaseConnector/man/renderTranslateQuerySql.Rd | 11 DatabaseConnector-6.0.0/DatabaseConnector/man/renderTranslateQuerySqlToAndromeda.Rd | 29 DatabaseConnector-6.0.0/DatabaseConnector/man/requiresTempEmulation.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/man/year.Rd |only DatabaseConnector-6.0.0/DatabaseConnector/tests/testthat/dbplyrTestFunction.R |only DatabaseConnector-6.0.0/DatabaseConnector/tests/testthat/test-DBItest.R | 1 DatabaseConnector-6.0.0/DatabaseConnector/tests/testthat/test-connectionDetails.R |only DatabaseConnector-6.0.0/DatabaseConnector/tests/testthat/test-dataHash.R |only DatabaseConnector-6.0.0/DatabaseConnector/tests/testthat/test-dbplyr.R |only DatabaseConnector-6.0.0/DatabaseConnector/tests/testthat/test-fetchResults.R | 76 DatabaseConnector-6.0.0/DatabaseConnector/tests/testthat/test-getTableNames.R | 79 DatabaseConnector-6.0.0/DatabaseConnector/tests/testthat/test-insertTable.R | 113 - DatabaseConnector-6.0.0/DatabaseConnector/tests/testthat/test-sendUpdates.R | 15 DatabaseConnector-6.0.0/DatabaseConnector/vignettes/DbiAndDbplyr.Rmd |only DatabaseConnector-6.0.0/DatabaseConnector/vignettes/Querying.Rmd | 46 90 files changed, 2358 insertions(+), 1392 deletions(-)
More information about DatabaseConnector at CRAN
Permanent link
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations
on them. Data types include point patterns, windows (domains),
pixel images, line segment patterns, tessellations and hyperframes.
Capabilities include creation and manipulation of data
(using command line or graphical interaction),
plotting, geometrical operations (rotation, shift, rescale,
affine transformation), convex hull, discretisation and
pixellation, Dirichlet tessellation, Delaunay triangulation,
pairwise distances, nearest-neighbour distances,
distance transform, morphological operations
(erosion, dilation, closing, opening), quadrat counting,
geometrical measurement, geometrical covariance,
colour maps, calculus on spatial domains,
Gaussian blur, level sets of images, transects of images,
intersections between objects, minimum distance matching.
(Excludes spatial data on a network, which are supported by
the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Tilman Davies [ctb],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Greg McSwiggan [ctb, cph],
Sebastian Meyer [ctb, cph],
Jens Oehlschlaegel [ctb, cph],
Suman Rakshit [ctb], [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 3.0-5 dated 2023-01-22 and 3.0-6 dated 2023-01-30
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 15 ++++++++++++++- R/factors.R | 18 ++++++++++++++---- inst/CITATION | 8 ++++---- inst/doc/packagesizes.txt | 1 + tests/testsEtoF.R | 13 ++++++++++--- 7 files changed, 53 insertions(+), 22 deletions(-)
Title: Ecological Restoration Planning
Description: Flexible framework for ecological restoration planning. It aims to identify priority areas for restoration efforts using optimization algorithms (based on Justeau-Allaire et al. 2021 <doi:10.1111/1365-2664.13803>). Priority areas can be identified by maximizing landscape indices, such as the effective mesh size (Jaeger 2000 <doi:10.1023/A:1008129329289>), or the integral index of connectivity (Pascual-Hortal & Saura 2006 <doi:10.1007/s10980-006-0013-z>). Additionally, constraints can be used to ensure that priority areas exhibit particular characteristics (e.g., ensure that particular places are not selected for restoration, ensure that priority areas form a single contiguous network). Furthermore, multiple near-optimal solutions can be generated to explore multiple options in restoration planning. The package leverages the 'Choco-solver' software to perform optimization using constraint programming (CP) techniques (<https://choco-solver.org/>).
Author: Dimitri Justeau-Allaire [aut, cre]
,
Jeffrey O Hanson [aut] ,
Ghislain Vieilledent [aut] ,
Philippe Vismara [aut],
Xavier Lorca [aut],
Philippe Birnbaum [aut]
Maintainer: Dimitri Justeau-Allaire <dimitri.justeau@gmail.com>
Diff between restoptr versions 1.0.3 dated 2022-11-12 and 1.0.4 dated 2023-01-30
restoptr-1.0.3/restoptr/man/figures/logo.tif |only restoptr-1.0.4/restoptr/DESCRIPTION | 15 - restoptr-1.0.4/restoptr/MD5 | 37 +-- restoptr-1.0.4/restoptr/NAMESPACE | 4 restoptr-1.0.4/restoptr/NEWS.md | 5 restoptr-1.0.4/restoptr/R/terra_utils.R | 8 restoptr-1.0.4/restoptr/README.md | 16 - restoptr-1.0.4/restoptr/build/vignette.rds |binary restoptr-1.0.4/restoptr/inst/doc/case_study.html | 10 restoptr-1.0.4/restoptr/inst/doc/restoptr.Rmd | 1 restoptr-1.0.4/restoptr/inst/doc/restoptr.html | 116 ++++------ restoptr-1.0.4/restoptr/man/area_to_nb_cells.Rd |only restoptr-1.0.4/restoptr/man/cell_area.Rd |only restoptr-1.0.4/restoptr/man/cell_width.Rd |only restoptr-1.0.4/restoptr/man/figures/README-habitat_data-1.png |binary restoptr-1.0.4/restoptr/man/figures/README-locked_out_data-1.png |binary restoptr-1.0.4/restoptr/man/figures/README-solution-1.png |binary restoptr-1.0.4/restoptr/man/nb_cell_to_area.Rd |only restoptr-1.0.4/restoptr/tests/testthat/test_set_max_iic_objective.R | 4 restoptr-1.0.4/restoptr/tests/testthat/test_set_max_mesh_objective.R | 4 restoptr-1.0.4/restoptr/tests/testthat/test_solve.R | 6 restoptr-1.0.4/restoptr/vignettes/restoptr.Rmd | 1 22 files changed, 117 insertions(+), 110 deletions(-)
Title: Jack, Zonal, and Schur Polynomials
Description: Symbolic calculation and evaluation of the Jack polynomials,
zonal polynomials, and Schur polynomials. Mainly based on Demmel &
Koev's paper (2006) <doi:10.1090/S0025-5718-05-01780-1>. Zonal
polynomials and Schur polynomials are particular cases of Jack
polynomials. Zonal polynomials appear in random matrix theory. Schur
polynomials appear in the field of combinatorics.
Author: Stephane Laurent
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between jack versions 5.0.0 dated 2023-01-28 and 5.0.1 dated 2023-01-30
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 5 +++++ src/Makevars.in | 2 +- src/Makevars.win | 2 +- src/jack.cpp | 8 +++++--- 6 files changed, 22 insertions(+), 15 deletions(-)
Title: Imbalanced Resampling using SMOTE with Boosting (SMOTEWB)
Description: Provides the SMOTE with Boosting (SMOTEWB) algorithm. See
F. Sağlam, M. A. Cengiz (2022) <doi:10.1016/j.eswa.2022.117023>.
Author: Fatih Saglam [aut, cre]
Maintainer: Fatih Saglam <saglamf89@gmail.com>
Diff between SMOTEWB versions 0.1.3 dated 2023-01-21 and 0.1.5 dated 2023-01-30
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ R/RUS.R | 1 - R/SMOTE.R | 1 + R/SMOTEWB.R | 11 +++-------- R/boosted_weights.R | 12 ++---------- README.md | 3 +++ inst |only 8 files changed, 19 insertions(+), 28 deletions(-)
Title: R Library for Spatial Data Analysis
Description: Provides spatial data analysis functionalities including Exploratory Spatial Data Analysis,
Spatial Cluster Detection and Clustering Analysis, Regionalization, etc. based on the C++ source code
of 'GeoDa', which is an open-source software tool that serves as an introduction to spatial data analysis.
The 'GeoDa' software and its documentation are available at <https://geodacenter.github.io>.
Author: Xun Li [aut, cre],
Luc Anselin [aut]
Maintainer: Xun Li <lixun910@gmail.com>
Diff between rgeoda versions 0.0.9 dated 2022-04-11 and 0.0.10-2 dated 2023-01-30
DESCRIPTION | 10 - MD5 | 40 +++--- R/sf_geoda.R | 4 src/Makevars | 2 src/Makevars.win | 2 src/libgeoda/DataUtils.h | 81 ++++++------- src/libgeoda/GenUtils.cpp | 83 ++++++------- src/libgeoda/GenUtils.h | 158 ++++++++++++-------------- src/libgeoda/SpatialIndAlgs.cpp | 116 +++++++++---------- src/libgeoda/clustering/azp.cpp | 1 src/libgeoda/clustering/redcap.cpp | 151 ++++++++++++------------ src/libgeoda/clustering/redcap.h | 93 +++++++-------- src/libgeoda/rng.h | 4 src/libgeoda/sa/BatchLISA.h | 1 src/libgeoda/sa/LISA.h | 1 src/libgeoda/shape/ttmath/ttmathparser.h | 102 ++++++++-------- src/libgeoda/shape/ttmath/ttmaththreads.h | 14 +- src/libgeoda/shape/ttmath/ttmathtypes.h | 2 src/libgeoda/weights/GalWeight.cpp | 26 +--- src/libgeoda/weights/GwtWeight.cpp | 20 +-- src/libgeoda/weights/PolysToContigWeights.cpp | 7 - 21 files changed, 452 insertions(+), 466 deletions(-)
Title: Functions from "Reinsurance: Actuarial and Statistical Aspects"
Description: Functions from the book "Reinsurance: Actuarial and Statistical Aspects" (2017) by Hansjoerg Albrecher, Jan Beirlant and Jef Teugels <https://www.wiley.com/en-us/Reinsurance%3A+Actuarial+and+Statistical+Aspects-p-9780470772683>.
Author: Tom Reynkens [aut, cre] ,
Roel Verbelen [aut] ,
Anastasios Bardoutsos [ctb] ,
Dries Cornilly [ctb] ,
Yuri Goegebeur [ctb] ,
Klaus Herrmann [ctb]
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>
Diff between ReIns versions 1.0.10 dated 2020-05-16 and 1.0.11 dated 2023-01-30
DESCRIPTION | 19 - MD5 | 18 NAMESPACE | 1 R/RiskMeasures.R | 4 R/Splicing.R | 12 build/vignette.rds |binary inst/NEWS.Rd | 16 inst/doc/ReIns.html | 982 ++++++++++++++++++++++++++++++++-------------------- src/Makevars | 4 src/RcppExports.cpp | 5 10 files changed, 667 insertions(+), 394 deletions(-)
Title: In-Text Expandable and Resizable Containers, Images, Tables and
Data Tables in 'Shiny', 'Rmarkdown' and 'Quarto' Documents
Description: Automatic resizing toolbar for containers, images and tables. Most suitable to include resize functionality in 'Markdown', 'Rmarkdown' and 'Quarto' documents.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between r2resize versions 1.4 dated 2023-01-15 and 1.5 dated 2023-01-30
DESCRIPTION | 16 ++++---- MD5 | 28 +++++++-------- NEWS.md | 12 ++++++ build/vignette.rds |binary inst/doc/introduction_r2resize.R | 4 ++ inst/doc/introduction_r2resize.Rmd | 11 ++++- inst/doc/introduction_r2resize.html | 26 ++++++++++--- inst/doc/resizable_containers_split_screen_r2resize.R | 3 + inst/doc/resizable_containers_split_screen_r2resize.Rmd | 9 ++-- inst/doc/resizable_containers_split_screen_r2resize.html | 17 ++++----- inst/themes/default_bottom.js | 2 - inst/themes/default_top.js | 2 - man/r2resize-package.Rd | 6 ++- vignettes/introduction_r2resize.Rmd | 11 ++++- vignettes/resizable_containers_split_screen_r2resize.Rmd | 9 ++-- 15 files changed, 104 insertions(+), 52 deletions(-)
Title: Multivariate Polynomials with Rational Coefficients
Description: Symbolic calculation and evaluation of multivariate
polynomials with rational coefficients. This package is strongly
inspired by the 'spray' package.
Author: Stephane Laurent [aut, cre],
Robin Hankin [ctb, cph]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between qspray versions 0.1.1 dated 2022-12-20 and 1.0.0 dated 2023-01-30
qspray-0.1.1/qspray/man/detQ.Rd |only qspray-1.0.0/qspray/DESCRIPTION | 11 ++-- qspray-1.0.0/qspray/MD5 | 19 +++--- qspray-1.0.0/qspray/NAMESPACE | 2 qspray-1.0.0/qspray/NEWS.md | 7 ++ qspray-1.0.0/qspray/R/RcppExports.R | 4 - qspray-1.0.0/qspray/R/qspray.R | 25 --------- qspray-1.0.0/qspray/src/Makevars.in | 2 qspray-1.0.0/qspray/src/Makevars.win | 1 qspray-1.0.0/qspray/src/RcppExports.cpp | 13 ---- qspray-1.0.0/qspray/src/qspray.cpp | 88 +++++++++++++++++++++----------- 11 files changed, 84 insertions(+), 88 deletions(-)
Title: Univariate Feature Selection and Compound Covariate for
Predicting Survival
Description: Univariate feature selection and compound covariate methods under the Cox model with high-dimensional features (e.g., gene expressions).
Available are survival data for non-small-cell lung cancer patients with gene expressions (Chen et al 2007 New Engl J Med) <DOI:10.1056/NEJMoa060096>,
statistical methods in Emura et al (2012 PLoS ONE) <DOI:10.1371/journal.pone.0047627>,
Emura & Chen (2016 Stat Methods Med Res) <DOI:10.1177/0962280214533378>, and Emura et al. (2019)<DOI:10.1016/j.cmpb.2018.10.020>.
Algorithms for generating correlated gene expressions are also available.
Author: Takeshi Emura, Hsuan-Yu Chen, Shigeyuki Matsui, Yi-Hau Chen
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between compound.Cox versions 3.25 dated 2023-01-21 and 3.26 dated 2023-01-30
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NAMESPACE | 5 +++-- R/CG.test.R |only man/CG.test.Rd |only man/compound.Cox-package.Rd | 4 ++-- 6 files changed, 14 insertions(+), 11 deletions(-)
Title: Sparse Multi-Type Regularized Feature Modeling
Description: Implementation of the SMuRF algorithm of Devriendt et al. (2021) <doi:10.1016/j.insmatheco.2020.11.010> to fit generalized linear models (GLMs) with multiple types of predictors via regularized maximum likelihood.
Author: Tom Reynkens [aut, cre] ,
Sander Devriendt [aut],
Katrien Antonio [aut]
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>
Diff between smurf versions 1.1.3 dated 2022-05-06 and 1.1.4 dated 2023-01-30
DESCRIPTION | 10 +-- MD5 | 15 +++-- build/partial.rdb |only build/vignette.rds |binary inst/NEWS.Rd | 8 +++ inst/doc/smurf.html | 135 +++++++++++++++++++++++---------------------------- man/smurf-package.Rd | 2 src/Makevars | 2 src/Makevars.win | 2 9 files changed, 85 insertions(+), 89 deletions(-)
Title: Convenient Plotting for the Modified Rankin Scale and Other
Ordinal Outcome Data
Description: Provides convenient tools for visualising ordinal outcome data following the "Grotta Bar" approach pioneered by The National Institute of Neurological Disorders and Stroke rt-PA Stroke Study Group (1995) <doi:10.1056/NEJM199512143332401>.
Author: Hannah Johns [aut, cre]
Maintainer: Hannah Johns <htjohns@gmail.com>
Diff between rankinPlot versions 1.0.1 dated 2022-08-09 and 1.1.0 dated 2023-01-30
DESCRIPTION | 9 +- MD5 | 8 +- NEWS.md | 16 +++++ R/grottaBar.R | 170 ++++++++++++++++++++++++++++++++++++++++++------------- man/grottaBar.Rd | 74 +++++++++++++++++++---- 5 files changed, 214 insertions(+), 63 deletions(-)
Title: Group Variable Selection for Quantile and Robust Mean Regression
Description: A program that conducts group variable selection for quantile and robust mean
regression (Sherwood and Li, 2022). The group lasso penalty (Yuan and Lin, 2006) is used for
group-wise variable selection. Both of the quantile and mean regression models are based on the Huber loss.
Specifically, with the tuning parameter in the Huber loss approaching to 0, the quantile check
function can be approximated by the Huber loss for the median and the tilted version of
Huber loss at other quantiles. Such approximation provides computational efficiency and stability, and
has also been shown to be statistical consistent.
Author: Shaobo Li [aut, cre],
Ben Sherwood [aut]
Maintainer: Shaobo Li <shaobo.li@ku.edu>
Diff between hrqglas versions 1.0.1 dated 2021-08-16 and 1.1.0 dated 2023-01-30
DESCRIPTION | 12 +++++------ MD5 | 10 ++++----- NAMESPACE | 36 +++++++++++++++++----------------- R/hrq_glasso.R | 56 +++++++++++++++++++++++++++++++++++++++--------------- README.md | 2 - build/partial.rdb |binary 6 files changed, 71 insertions(+), 45 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-18 2.0.3
2018-01-08 1.0-5