Title: Data for "Forecasting: Principles and Practice" (3rd Edition)
Description: All data sets required for the examples and exercises in the book
"Forecasting: principles and practice" by Rob J Hyndman and George Athanasopoulos
<https://OTexts.com/fpp3/>. All packages required to run the examples are also
loaded.
Author: Rob Hyndman [aut, cre, cph] ,
George Athanasopoulos [ctb],
Mitchell O'Hara-Wild [ctb],
RStudio [cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between fpp3 versions 0.4.0 dated 2021-02-06 and 0.5 dated 2023-01-31
DESCRIPTION | 17 ++++++-------- MD5 | 18 +++++++-------- NAMESPACE | 10 ++++++++ NEWS.md | 7 +++++ R/attach.R | 3 +- R/data.R | 7 +++-- R/fpp3.R | 11 +++++++++ README.md | 62 ++++++++++++++++++++++++++-------------------------- man/bank_calls.Rd | 9 +++++-- man/fpp3-package.Rd | 9 ++----- 10 files changed, 90 insertions(+), 63 deletions(-)
Title: Graphical Tools for Exploring Data with 'iNZight'
Description: Simple plotting function(s) for exploratory data analysis with flexible options allowing for easy plot customisation. The goal is to make it easy for beginners to start exploring a dataset through simple R function calls, as well as provide a similar interface to summary statistics and inference information. Includes functionality to generate interactive HTML-driven graphs. Used by 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions.
Author: Tom Elliott [aut, cre] ,
Yu Han Soh [aut],
Daniel Barnett [aut],
Simon Anastasiadis [ctb]
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightPlots versions 2.14.0 dated 2022-01-24 and 2.15.1 dated 2023-01-31
DESCRIPTION | 21 + MD5 | 88 ++++---- NAMESPACE | 1 R/addSmoother.R | 1 R/exploreAllSummaries.R | 2 R/general.R | 86 +++++--- R/getSummary.R | 3 R/iNZGG.R | 260 ++++++++++++++++-------- R/iNZightPlot.R | 116 ++++++++-- R/inference.R | 325 +++++++++++++++++++----------- R/inzDataframe.R | 236 +++++++++++++++++----- R/inzdotplot.R | 4 R/inzhistplot.R | 10 R/inzpar.R | 256 +++++++++++++---------- R/inzplot.R | 8 R/makeTitles.R | 2 R/multiplot.R |only R/summary.R | 230 +++++++++++++-------- R/sysdata.rda |binary man/can.interact.Rd | 8 man/exploreAllSummaries.Rd | 6 man/exportHTML.Rd | 8 man/exportSVG.Rd | 6 man/figures/README-colours-1.png |binary man/figures/README-demo-1.png |binary man/figures/README-demo-inf.png |binary man/figures/README-demo-usage-1.png |binary man/figures/README-demo-usage-2.png |binary man/figures/README-demo-usage-3.png |binary man/figures/README-demo-usage-4.png |binary man/figures/README-trends-2.png |binary man/getPlotSummary.Rd | 3 man/iNZightPlot.Rd | 7 man/inzinference.Rd | 4 man/inzpalette.Rd | 6 man/inzpar.Rd | 18 + man/inzplot.Rd | 3 man/inzsummary.Rd | 4 tests/testthat/cas500_coded.csv |only tests/testthat/casdict.csv |only tests/testthat/test_datetimes.R | 24 +- tests/testthat/test_dictionary.R |only tests/testthat/test_ftplots.R | 385 +++++++++++++++++++++++++++++++++++- tests/testthat/test_inference.R | 144 ++++++++----- tests/testthat/test_inzdf.R |only tests/testthat/test_multivars.R |only tests/testthat/test_palettes.R | 34 ++- tests/testthat/test_survey.R | 15 + 48 files changed, 1670 insertions(+), 654 deletions(-)
Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] ,
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brueggemann [ctb] ,
Christophe Dervieux [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.36 dated 2022-12-21 and 0.37 dated 2023-01-31
xfun-0.36/xfun/src/Makevars |only xfun-0.37/xfun/DESCRIPTION | 10 +++++----- xfun-0.37/xfun/MD5 | 27 +++++++++++++-------------- xfun-0.37/xfun/NAMESPACE | 1 + xfun-0.37/xfun/NEWS.md | 6 ++++++ xfun-0.37/xfun/R/cran.R | 27 +++++++++++++++++++++++++-- xfun-0.37/xfun/R/os.R | 6 ++++++ xfun-0.37/xfun/R/packages.R | 4 ++-- xfun-0.37/xfun/R/paths.R | 2 +- xfun-0.37/xfun/R/revcheck.R | 28 ++++++++++++++++++++++++++++ xfun-0.37/xfun/R/session.R | 2 +- xfun-0.37/xfun/R/utils.R | 22 ++++++++++++++++++---- xfun-0.37/xfun/inst/doc/xfun.html | 6 +++--- xfun-0.37/xfun/man/isFALSE.Rd | 16 +++++++++++++--- xfun-0.37/xfun/man/os.Rd | 5 +++++ 15 files changed, 127 insertions(+), 35 deletions(-)
Title: Quadratic Programming Solver using the 'OSQP' Library
Description: Provides bindings to the 'OSQP' solver. The 'OSQP' solver is a numerical optimization package or solving convex quadratic programs written in 'C' and based on the alternating direction method of multipliers. See <arXiv:1711.08013> for details.
Author: Bartolomeo Stellato [aut, ctb, cph],
Goran Banjac [aut, ctb, cph],
Paul Goulart [aut, ctb, cph],
Stephen Boyd [aut, ctb, cph],
Eric Anderson [ctb],
Vineet Bansal [aut, ctb],
Balasubramanian Narasimhan [cre, ctb]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between osqp versions 0.6.0.7 dated 2022-11-09 and 0.6.0.8 dated 2023-01-31
osqp-0.6.0.7/osqp/src/include |only osqp-0.6.0.7/osqp/src/osqp_sources/lin_sys/direct/qdldl/qdldl_sources/include/qdldl_types.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/basic_qp/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/basic_qp/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/basic_qp2/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/basic_qp2/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/lin_alg/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/lin_alg/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/non_cvx/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/non_cvx/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/osqp_tester.c.orig |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/osqp_tester.cpp |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/primal_dual_infeasibility/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/primal_dual_infeasibility/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/primal_infeasibility/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/primal_infeasibility/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/solve_linsys/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/solve_linsys/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/unconstrained/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/unconstrained/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/update_matrices/__pycache__ |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/update_matrices/data.h |only osqp-0.6.0.7/osqp/src/osqp_sources/tests/utils/__pycache__ |only osqp-0.6.0.8/osqp/DESCRIPTION | 9 - osqp-0.6.0.8/osqp/MD5 | 70 +--------- osqp-0.6.0.8/osqp/NEWS.md | 9 + osqp-0.6.0.8/osqp/configure | 21 ++- osqp-0.6.0.8/osqp/inst/26ce409b_fixes |only osqp-0.6.0.8/osqp/src/Makevars | 6 osqp-0.6.0.8/osqp/src/Makevars.win |only osqp-0.6.0.8/osqp/src/osqp/Makefile | 2 osqp-0.6.0.8/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_interface.c | 2 osqp-0.6.0.8/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_loader.c | 6 osqp-0.6.0.8/osqp/src/osqp_sources/lin_sys/direct/pardiso/pardiso_loader.h | 2 osqp-0.6.0.8/osqp/src/osqp_sources/tests/CMakeLists.txt | 4 osqp-0.6.0.8/osqp/src/osqp_sources/tests/osqp_tester.c |only 36 files changed, 56 insertions(+), 75 deletions(-)
Title: Hypothesis Testing for Markov Switching Models
Description: Implementation of hypothesis testing procedures described in Hansen (1992) <doi:10.1002/jae.3950070506>, Carrasco, Hu, & Ploberger (2014) <doi:10.3982/ECTA8609>, Dufour & Luger (2017) <doi:10.1080/07474938.2017.1307548>, and Rodriguez Rondon & Dufour (2022) <https://grodriguezrondon.com/research/> that can be used to identify the number of regimes in Markov switching models.
Author: Gabriel Rodriguez Rondon [cre, aut],
Jean-Marie Dufour [aut]
Maintainer: Gabriel Rodriguez Rondon <gabriel.rodriguezrondon@mail.mcgill.ca>
Diff between MSTest versions 0.1.0 dated 2022-10-19 and 0.1.1 dated 2023-01-31
DESCRIPTION | 9 ++- MD5 | 87 ++++++++++++++++++------------------ NEWS.md |only R/RcppExports.R | 24 ++++----- R/methods.R | 4 - R/methods_LRTest.R | 50 +++++++------------- R/models.R | 42 ++++++++++------- inst/examples/ARmdl_examples.R | 3 - inst/examples/BootLRTest_examples.R |only inst/examples/CHPTest_examples.R | 4 - inst/examples/DLMCTest_examples.R | 3 - inst/examples/DLMMCTest_examples.R | 3 - inst/examples/HLRTest_examples.R | 4 - inst/examples/HMmdl_examples.R | 34 +++++++++++--- inst/examples/LMCLRTest_examples.R | 6 -- inst/examples/MMCLRTest_examples.R |only inst/examples/MSVARmdl_examples.R | 6 -- inst/examples/Nmdl_examples.R | 20 +++++++- inst/examples/VARmdl_examples.R | 3 - inst/examples/simuAR_examples.R | 3 - inst/examples/simuHMM_examples.R | 19 +++++++ inst/examples/simuMSAR_examples.R | 5 -- inst/examples/simuMSVAR_examples.R | 3 - inst/examples/simuNorm_examples.R | 3 - inst/examples/simuVAR_examples.R | 4 - man/ARmdl.Rd | 1 man/DLMCTest.Rd | 3 - man/DLMMCTest.Rd | 3 - man/HMmdl.Rd | 2 man/MMCLRpval_fun.Rd | 11 ++-- man/MMCLRpval_fun_min.Rd | 7 ++ man/MMC_bounds.Rd | 6 -- man/MSVARmdl.Rd | 8 +-- man/Nmdl.Rd | 20 +++++++- man/VARmdl.Rd | 3 - man/compu_tstat.Rd | 8 --- man/simuAR.Rd | 3 - man/simuHMM.Rd | 19 +++++++ man/simuMSAR.Rd | 3 - man/simuMSVAR.Rd | 3 - man/simuNorm.Rd | 3 - man/simuVAR.Rd | 4 - src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 36 +++++++------- src/methods_LRTest.cpp | 73 ++++++++---------------------- 46 files changed, 276 insertions(+), 283 deletions(-)
Title: Holonomic Gradient Method and Gradient Descent
Description: The holonomic gradient method (HGM, hgm) gives a way to evaluate normalization
constants of unnormalized probability distributions by utilizing holonomic
systems of differential or difference equations. The holonomic gradient descent (HGD, hgd) gives a method
to find maximal likelihood estimates by utilizing the HGM.
Author: Nobuki Takayama, Tamio Koyama, Tomonari Sei, Hiromasa Nakayama, Kenta Nishiyama
Maintainer: Nobuki Takayama <takayama@math.kobe-u.ac.jp>
Diff between hgm versions 1.22 dated 2022-10-26 and 1.23 dated 2023-01-31
DESCRIPTION | 8 +- MD5 | 16 ++--- build/partial.rdb |binary src/hgm_ko_orthant.c | 6 +- src/jack-n.c | 137 +++++++++++++++++++++++++-------------------------- src/mh.c | 52 +++++++++---------- src/mh.h | 1 src/rk.c | 20 ++++--- src/wmain.c | 77 ++++++++++++++-------------- 9 files changed, 160 insertions(+), 157 deletions(-)
Title: A 'Shiny' App to Analyze Accelerometer-Measured Daily Physical
Behavior Data
Description: A tool to analyse 'ActiGraph' accelerometer data and to implement
the use of the PROactive Physical Activity in COPD (chronic obstructive pulmonary disease) instruments. Once analysis
is completed, the app allows to export results to .csv files and to generate
a report of the measurement. All the configured inputs relevant for interpreting
the results are recorded in the report. In addition to the existing 'R' packages
that are fully integrated with the app, the app uses some functions from the
'actigraph.sleepr' package developed by Petkova (2021) <https://github.com/dipetkov/actigraph.sleepr/>.
Author: Pierre-Yves de Muellenheim [cre, aut]
Maintainer: Pierre-Yves de Muellenheim <pydemull@uco.fr>
Diff between activAnalyzer versions 1.1.0 dated 2022-12-02 and 2.0.0 dated 2023-01-31
activAnalyzer-1.1.0/activAnalyzer/LICENCE.note |only activAnalyzer-1.1.0/activAnalyzer/inst/report/report_en.Rmd |only activAnalyzer-1.1.0/activAnalyzer/inst/report/report_en_cppac.Rmd |only activAnalyzer-1.1.0/activAnalyzer/inst/report/report_en_dppac.Rmd |only activAnalyzer-1.1.0/activAnalyzer/inst/report/report_fr.Rmd |only activAnalyzer-1.1.0/activAnalyzer/inst/report/report_fr_cppac.Rmd |only activAnalyzer-1.1.0/activAnalyzer/inst/report/report_fr_dppac.Rmd |only activAnalyzer-1.1.0/activAnalyzer/man/tbl_agd.Rd |only activAnalyzer-2.0.0/activAnalyzer/DESCRIPTION | 19 activAnalyzer-2.0.0/activAnalyzer/LICENSE.note |only activAnalyzer-2.0.0/activAnalyzer/MD5 | 122 activAnalyzer-2.0.0/activAnalyzer/NAMESPACE | 5 activAnalyzer-2.0.0/activAnalyzer/NEWS.md | 20 activAnalyzer-2.0.0/activAnalyzer/R/app_server.R | 1642 ++++++++-- activAnalyzer-2.0.0/activAnalyzer/R/app_ui.R | 450 ++ activAnalyzer-2.0.0/activAnalyzer/R/average_results.R | 46 activAnalyzer-2.0.0/activAnalyzer/R/compute_accumulation_metrics.R |only activAnalyzer-2.0.0/activAnalyzer/R/compute_intensity_distri_metrics.R |only activAnalyzer-2.0.0/activAnalyzer/R/coord_radar.R |only activAnalyzer-2.0.0/activAnalyzer/R/create_fig_mx_by_day.R |only activAnalyzer-2.0.0/activAnalyzer/R/create_fig_mx_summary.R |only activAnalyzer-2.0.0/activAnalyzer/R/create_fig_res_by_day.R | 694 +++- activAnalyzer-2.0.0/activAnalyzer/R/create_flextable_summary.R | 633 +++ activAnalyzer-2.0.0/activAnalyzer/R/get_ig_results.R |only activAnalyzer-2.0.0/activAnalyzer/R/get_ratio_mvpa_sed_comment.R | 2 activAnalyzer-2.0.0/activAnalyzer/R/globals.R | 34 activAnalyzer-2.0.0/activAnalyzer/R/mark_intensity.R | 39 activAnalyzer-2.0.0/activAnalyzer/R/mark_wear_time.R | 4 activAnalyzer-2.0.0/activAnalyzer/R/plot_data.R | 23 activAnalyzer-2.0.0/activAnalyzer/R/plot_data_with_intensity.R | 24 activAnalyzer-2.0.0/activAnalyzer/R/read_agd.R | 2 activAnalyzer-2.0.0/activAnalyzer/R/recap_by_day.R | 237 - activAnalyzer-2.0.0/activAnalyzer/R/tbl_agd.R | 3 activAnalyzer-2.0.0/activAnalyzer/README.md | 26 activAnalyzer-2.0.0/activAnalyzer/inst/doc/activAnalyzer.R | 298 + activAnalyzer-2.0.0/activAnalyzer/inst/doc/activAnalyzer.Rmd | 374 +- activAnalyzer-2.0.0/activAnalyzer/inst/doc/activAnalyzer.html | 527 ++- activAnalyzer-2.0.0/activAnalyzer/inst/guide/references.bib | 663 ++-- activAnalyzer-2.0.0/activAnalyzer/inst/guide/user_guide_en.Rmd | 54 activAnalyzer-2.0.0/activAnalyzer/inst/guide/user_guide_en.aux | 16 activAnalyzer-2.0.0/activAnalyzer/inst/guide/user_guide_en.log |only activAnalyzer-2.0.0/activAnalyzer/inst/guide/user_guide_en.pdf |binary activAnalyzer-2.0.0/activAnalyzer/inst/guide/user_guide_en.toc | 16 activAnalyzer-2.0.0/activAnalyzer/inst/guide/user_guide_fr.Rmd | 52 activAnalyzer-2.0.0/activAnalyzer/inst/guide/user_guide_fr.log | 161 activAnalyzer-2.0.0/activAnalyzer/inst/guide/user_guide_fr.pdf |binary activAnalyzer-2.0.0/activAnalyzer/inst/report/report_en_cppac_html.Rmd |only activAnalyzer-2.0.0/activAnalyzer/inst/report/report_en_cppac_pdf.Rmd |only activAnalyzer-2.0.0/activAnalyzer/inst/report/report_en_dppac_html.Rmd |only activAnalyzer-2.0.0/activAnalyzer/inst/report/report_en_dppac_pdf.Rmd |only activAnalyzer-2.0.0/activAnalyzer/inst/report/report_en_long.Rmd |only activAnalyzer-2.0.0/activAnalyzer/inst/report/report_en_short.Rmd |only activAnalyzer-2.0.0/activAnalyzer/inst/report/report_fr_cppac_html.Rmd |only activAnalyzer-2.0.0/activAnalyzer/inst/report/report_fr_cppac_pdf.Rmd |only activAnalyzer-2.0.0/activAnalyzer/inst/report/report_fr_dppac_html.Rmd |only activAnalyzer-2.0.0/activAnalyzer/inst/report/report_fr_dppac_pdf.Rmd |only activAnalyzer-2.0.0/activAnalyzer/inst/report/report_fr_long.Rmd |only activAnalyzer-2.0.0/activAnalyzer/inst/report/report_fr_short.Rmd |only activAnalyzer-2.0.0/activAnalyzer/man/average_results.Rd | 4 activAnalyzer-2.0.0/activAnalyzer/man/compute_accumulation_metrics.Rd |only activAnalyzer-2.0.0/activAnalyzer/man/compute_intensity_distri_metrics.Rd |only activAnalyzer-2.0.0/activAnalyzer/man/create_fig_mx_by_day.Rd |only activAnalyzer-2.0.0/activAnalyzer/man/create_fig_mx_summary.Rd |only activAnalyzer-2.0.0/activAnalyzer/man/create_fig_res_by_day.Rd | 25 activAnalyzer-2.0.0/activAnalyzer/man/create_flextable_summary.Rd | 15 activAnalyzer-2.0.0/activAnalyzer/man/get_ig_results.Rd |only activAnalyzer-2.0.0/activAnalyzer/man/get_ratio_mvpa_sed_comment.Rd | 4 activAnalyzer-2.0.0/activAnalyzer/man/mark_intensity.Rd | 33 activAnalyzer-2.0.0/activAnalyzer/man/read_agd.Rd | 80 activAnalyzer-2.0.0/activAnalyzer/man/recap_by_day.Rd | 60 activAnalyzer-2.0.0/activAnalyzer/tests/testthat/test-compute_accumulation_metrics.R |only activAnalyzer-2.0.0/activAnalyzer/tests/testthat/test-compute_intensity_distri_metrics.R |only activAnalyzer-2.0.0/activAnalyzer/tests/testthat/test-create_fig_mx_by_day.R |only activAnalyzer-2.0.0/activAnalyzer/tests/testthat/test-create_fig_mx_summary.R |only activAnalyzer-2.0.0/activAnalyzer/tests/testthat/test-create_fig_res_by_day.R | 67 activAnalyzer-2.0.0/activAnalyzer/tests/testthat/test-create_flextable_summary.R | 26 activAnalyzer-2.0.0/activAnalyzer/tests/testthat/test-golem-recommended.R | 48 activAnalyzer-2.0.0/activAnalyzer/tests/testthat/test-plot_data.R | 28 activAnalyzer-2.0.0/activAnalyzer/tests/testthat/test-plot_data_with_intensity.R | 39 activAnalyzer-2.0.0/activAnalyzer/tests/testthat/test-recap_by_day.R |only activAnalyzer-2.0.0/activAnalyzer/vignettes/activAnalyzer.Rmd | 374 +- 81 files changed, 5381 insertions(+), 1608 deletions(-)
Title: MultiDimensional Feature Selection
Description: Functions for MultiDimensional Feature Selection (MDFS):
calculating multidimensional information gains, scoring variables,
finding important variables, plotting selection results.
This package includes an optional CUDA implementation that speeds up
information gain calculation using NVIDIA GPGPUs.
R. Piliszek et al. (2019) <doi:10.32614/RJ-2019-019>.
Author: Radoslaw Piliszek [aut, cre],
Krzysztof Mnich [aut],
Pawel Tabaszewski [aut],
Szymon Migacz [aut],
Andrzej Sulecki [aut],
Witold Remigiusz Rudnicki [aut]
Maintainer: Radoslaw Piliszek <r.piliszek@uwb.edu.pl>
Diff between MDFS versions 1.3.0 dated 2022-04-19 and 1.4.0 dated 2023-01-31
MDFS-1.3.0/MDFS/src/cpu/mdfs_cpu_kernel_incremental.h |only MDFS-1.4.0/MDFS/DESCRIPTION | 14 MDFS-1.4.0/MDFS/MD5 | 54 - MDFS-1.4.0/MDFS/NAMESPACE | 2 MDFS-1.4.0/MDFS/NEWS | 45 + MDFS-1.4.0/MDFS/R/information_gain.R | 403 +---------- MDFS-1.4.0/MDFS/R/internal.R | 4 MDFS-1.4.0/MDFS/R/main.R | 32 MDFS-1.4.0/MDFS/R/p_value.R | 40 - MDFS-1.4.0/MDFS/R/tuples.R |only MDFS-1.4.0/MDFS/R/utils.R | 41 + MDFS-1.4.0/MDFS/man/AddContrastVariables.Rd | 5 MDFS-1.4.0/MDFS/man/ComputeInterestingTuples.Rd | 21 MDFS-1.4.0/MDFS/man/ComputeInterestingTuplesDiscrete.Rd | 14 MDFS-1.4.0/MDFS/man/ComputeMaxInfoGains.Rd | 18 MDFS-1.4.0/MDFS/man/ComputeMaxInfoGainsDiscrete.Rd | 14 MDFS-1.4.0/MDFS/man/GenContrastVariables.Rd |only MDFS-1.4.0/MDFS/man/GetRange.Rd |only MDFS-1.4.0/MDFS/man/MDFS.Rd | 6 MDFS-1.4.0/MDFS/src/Makevars.cuda.in | 4 MDFS-1.4.0/MDFS/src/Makevars.in | 2 MDFS-1.4.0/MDFS/src/Makevars.win | 2 MDFS-1.4.0/MDFS/src/cpu/common.cpp | 111 --- MDFS-1.4.0/MDFS/src/cpu/common.h | 76 +- MDFS-1.4.0/MDFS/src/cpu/mdfs.h | 539 ++++++++++------ MDFS-1.4.0/MDFS/src/cpu/mdfs_count_counters.h | 18 MDFS-1.4.0/MDFS/src/cpu/mdfs_cpu_kernel.h | 133 +++ MDFS-1.4.0/MDFS/src/r_init.cpp | 4 MDFS-1.4.0/MDFS/src/r_interface.cpp | 168 +++- MDFS-1.4.0/MDFS/src/r_interface.h | 11 30 files changed, 965 insertions(+), 816 deletions(-)
Title: Delete or Merge Regressors Algorithms for Linear and Logistic
Model Selection and High-Dimensional Data
Description: Model selection algorithms for regression and classification, where the predictors can be continuous or categorical and the number of regressors may exceed the number of observations. The selected model consists of a subset of numerical regressors and partitions of levels of factors. Aleksandra Maj-Kańska, Piotr Pokarowski and Agnieszka Prochenka, 2015. Delete or merge regressors for linear model selection. Electronic Journal of Statistics 9(2): 1749-1778. <doi:10.1214/15-EJS1050>. Piotr Pokarowski and Jan Mielniczuk, 2015. Combined l1 and greedy l0 penalized least squares for linear model selection. Journal of Machine Learning Research 16(29): 961-992. <https://www.jmlr.org/papers/volume16/pokarowski15a/pokarowski15a.pdf>. Piotr Pokarowski, Wojciech Rejchel, Agnieszka Sołtys, Michał Frej and Jan Mielniczuk, 2022. Improving Lasso for model selection and prediction. Scandinavian Journal of Statistics, 49(2): 831–863. <doi:10.1111/sjos.12546>.
Author: Agnieszka Prochenka-Soltys [aut] ,
Piotr Pokarowski [aut],
Szymon Nowakowski [aut, cre]
Maintainer: Szymon Nowakowski <s.nowakowski@mimuw.edu.pl>
Diff between DMRnet versions 0.3.3 dated 2022-11-15 and 0.3.4 dated 2023-01-31
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 6 +++++- R/DMRnet.R | 32 +++++++++++--------------------- R/constants.R | 4 +++- R/cv.DMRnet.R | 2 +- R/cv_compute_model.R | 2 +- README.md | 6 ------ inst/CITATION | 12 ++++++------ inst/doc/getting-started.Rmd | 18 ++++++++++-------- inst/doc/getting-started.html | 38 +++++++++++++++++++++++++++----------- man/DMRnet.Rd | 19 +++---------------- man/cv.DMRnet.Rd | 2 +- vignettes/getting-started.Rmd | 18 ++++++++++-------- 14 files changed, 95 insertions(+), 98 deletions(-)
Title: Simplified Statistics for PA 606
Description: Simplifies functions assess normality for bivariate and multivariate statistical techniques. Includes functions designed to replicate plots and tables that would result from similar calls in 'SPSS', including hst(), box(), qq(), tab(), cormat(), and residplot(). Also includes simplified formulae, such as mode(), scatter(), p.corr(), ow.anova(), and rm.anova().
Author: Burrel Vann Jr [aut, cre]
Maintainer: Burrel Vann Jr <bvannjr@sdsu.edu>
Diff between vannstats versions 1.2.7.14 dated 2022-07-18 and 1.3.1.30 dated 2023-01-31
DESCRIPTION | 12 ++++++------ MD5 | 27 +++++++++++++++++---------- NAMESPACE | 10 ++++++++++ R/UCR2015.R | 2 +- R/WBBN2019.R |only R/bar.chart.R |only R/chi.sq.R |only R/crosstabs.R | 51 +++++++++++++++++++++++++++++++++++++++++++++++---- R/p.corr.R | 11 ++++++++++- R/scatter.R | 17 +++++++++++++++-- R/z.calc.R | 40 +++++++++++++++++++++++++++++++++++----- data/WBBN2019.RData |only man/UCR2015.Rd | 2 +- man/WBBN2019.Rd |only man/bar.chart.Rd |only man/chi.sq.Rd |only man/scatter.Rd | 4 +++- man/z.calc.Rd | 4 +++- 18 files changed, 148 insertions(+), 32 deletions(-)
Title: Penalized Quantile Regression
Description: Performs penalized quantile regression with LASSO, elastic net, SCAD and MCP penalty functions including group penalties. Provides a function that automatically generates lambdas and evaluates different models with cross validation or BIC, including a large p version of BIC. Below URL provides a link to a work in progress vignette.
Author: Ben Sherwood [aut, cre], Adam Maidman [ctb], Shaobo Li [ctb]
Maintainer: Ben Sherwood <ben.sherwood@ku.edu>
Diff between rqPen versions 3.0 dated 2022-08-09 and 3.0.1 dated 2023-01-31
DESCRIPTION | 12 +++++++----- MD5 | 12 ++++++------ NEWS | 7 +++++++ R/mainFunctions.R | 8 +++++++- R/workHorse.R | 7 ++++++- build/partial.rdb |binary inst/doc/rqPen.pdf |binary 7 files changed, 33 insertions(+), 13 deletions(-)
Title: Read and Process 'Pamguard' Binary Data
Description: Functions for easily reading and processing binary data files created by
'Pamguard' (<https://www.pamguard.org/>). All functions for directly reading the
binary data files are based on 'MATLAB' code written by Michael Oswald.
Author: Taiki Sakai [aut, cre],
Michael Oswald [aut],
Douglas Gillespie [ctb]
Maintainer: Taiki Sakai <taiki.sakai@noaa.gov>
Diff between PamBinaries versions 1.7.0 dated 2022-04-29 and 1.8.0 dated 2023-01-31
DESCRIPTION | 8 ++-- MD5 | 25 ++++++++------- R/loadPamguardBinaryFile.R | 11 ++++++ R/readPamData.R | 3 - R/readTritechTrack.R |only inst/extdata/GTD.pgdf |only inst/extdata/README.txt | 3 + man/readBeamFormerAnnotation.Rd | 58 ++++++++++++++++++------------------ man/readBearingAnnotation.Rd | 58 ++++++++++++++++++------------------ man/readDLAnnotation.Rd | 58 ++++++++++++++++++------------------ man/readDLDetData.Rd | 58 ++++++++++++++++++------------------ man/readTDBLAnnotation.Rd | 58 ++++++++++++++++++------------------ man/readTMAnnotation.Rd | 58 ++++++++++++++++++------------------ man/readTritechTrack.Rd |only tests/testthat/test-binaryReading.R | 10 ++++++ 15 files changed, 215 insertions(+), 193 deletions(-)
Title: Identify Sudden Gains in Longitudinal Data
Description: Identify sudden gains based on the three criteria outlined by Tang and DeRubeis (1999) <doi:10.1037/0022-006X.67.6.894> to a selection of repeated measures. Sudden losses, defined as the opposite of sudden gains can also be identified. Two different datasets can be created, one including all sudden gains/losses and one including one selected sudden gain/loss for each case. It can extract scores around sudden gains/losses. It can plot the average change around sudden gains/losses and trajectories of individual cases.
Author: Milan Wiedemann [aut, cre] ,
Graham M Thew [aut] ,
Richard Stott [ctb] ,
Anke Ehlers [ctb, ths] ,
Mental Health Research UK [fnd],
Wellcome Trust [fnd]
Maintainer: Milan Wiedemann <milan.wiedemann@gmail.com>
Diff between suddengains versions 0.4.4 dated 2020-05-22 and 0.6.0 dated 2023-01-31
suddengains-0.4.4/suddengains/tests |only suddengains-0.6.0/suddengains/DESCRIPTION | 18 suddengains-0.6.0/suddengains/LICENSE |only suddengains-0.6.0/suddengains/MD5 | 65 suddengains-0.6.0/suddengains/R/check_interval.R | 4 suddengains-0.6.0/suddengains/R/create_byperson.R | 14 suddengains-0.6.0/suddengains/R/create_bysg.R | 28 suddengains-0.6.0/suddengains/R/define_crit1_cutoff.R | 6 suddengains-0.6.0/suddengains/R/extract_values.R | 20 suddengains-0.6.0/suddengains/R/identify_sg.R | 10 suddengains-0.6.0/suddengains/R/identify_sl.R | 12 suddengains-0.6.0/suddengains/R/plot_sg_intervals.R | 2 suddengains-0.6.0/suddengains/R/sgdata.R | 6 suddengains-0.6.0/suddengains/R/write_byperson.R | 8 suddengains-0.6.0/suddengains/R/write_bysg.R | 6 suddengains-0.6.0/suddengains/R/zzz.R |only suddengains-0.6.0/suddengains/README.md | 128 suddengains-0.6.0/suddengains/build/vignette.rds |binary suddengains-0.6.0/suddengains/inst/CITATION | 2 suddengains-0.6.0/suddengains/inst/doc/shinygains.html | 45 suddengains-0.6.0/suddengains/inst/doc/suddengains-tutorial.html | 2678 +++++----- suddengains-0.6.0/suddengains/man/check_interval.Rd | 4 suddengains-0.6.0/suddengains/man/create_byperson.Rd | 4 suddengains-0.6.0/suddengains/man/create_bysg.Rd | 2 suddengains-0.6.0/suddengains/man/define_crit1_cutoff.Rd | 6 suddengains-0.6.0/suddengains/man/figures/README-unnamed-chunk-4-1.png |binary suddengains-0.6.0/suddengains/man/figures/README-unnamed-chunk-5-1.png |binary suddengains-0.6.0/suddengains/man/identify_sg.Rd | 8 suddengains-0.6.0/suddengains/man/identify_sl.Rd | 10 suddengains-0.6.0/suddengains/man/plot_sg_intervals.Rd | 2 suddengains-0.6.0/suddengains/man/sgdata.Rd | 2 suddengains-0.6.0/suddengains/man/sgdata_bad.Rd | 4 suddengains-0.6.0/suddengains/man/write_byperson.Rd | 8 suddengains-0.6.0/suddengains/man/write_bysg.Rd | 6 suddengains-0.6.0/suddengains/vignettes/shinygains.md |only suddengains-0.6.0/suddengains/vignettes/suddengains-tutorial.md |only 36 files changed, 1754 insertions(+), 1354 deletions(-)
Title: Estimation and Hypothesis Testing for Threshold Regression
Description: Threshold regression models are also called two-phase regression, broken-stick regression, split-point regression, structural change models, and regression kink models, with and without interaction terms. Methods for both continuous and discontinuous threshold models are included, but the support for the former is much greater. This package is described in Fong, Huang, Gilbert and Permar (2017) <DOI:10.1186/s12859-017-1863-x> and the package vignette.
Author: Youyi Fong [cre],
Qianqian Chen [aut],
Shuangcheng Hua [aut],
Hyunju Son [aut],
Adam Elder [aut],
Tao Yang [aut],
Zonglin He [aut],
Simone Giannerini [aut]
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between chngpt versions 2022.4-6 dated 2022-04-07 and 2023.1-30 dated 2023-01-31
ChangeLog | 8 ++++++++ DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- inst/CITATION | 18 +++++++----------- inst/doc/chngpt-vignette.pdf |binary src/Makevars | 1 - src/Makevars.win | 1 - src/datablock.h | 2 ++ src/defs.h | 26 ++++++++++++++++++++++++++ src/la.h | 2 +- src/matrix.h | 2 +- src/matrix_bidirectional_iterator.h | 24 +++++++++++++++--------- src/matrix_forward_iterator.h | 26 ++++++++++++++++---------- src/matrix_random_access_iterator.h | 26 ++++++++++++++++---------- src/performance.cc | 6 ++++-- 15 files changed, 113 insertions(+), 63 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-20 1.0.2
Title: Unicode Text Processing
Description: Process and print 'UTF-8' encoded international
text (Unicode). Input, validate, normalize, encode, format, and
display.
Author: Patrick O. Perry [aut, cph],
Kirill Mueller [cre],
Unicode, Inc. [cph, dtc]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between utf8 versions 1.2.2 dated 2021-07-24 and 1.2.3 dated 2023-01-31
utf8-1.2.2/utf8/tests/testthat/_snaps/utf8_format.md |only utf8-1.2.3/utf8/DESCRIPTION | 11 utf8-1.2.3/utf8/MD5 | 27 utf8-1.2.3/utf8/build/vignette.rds |binary utf8-1.2.3/utf8/inst/doc/utf8.html | 507 ++ utf8-1.2.3/utf8/src/bytes.c | 2 utf8-1.2.3/utf8/src/utf8lite/src/private/casefold.h | 79 utf8-1.2.3/utf8/src/utf8lite/src/private/charwidth.h | 1590 ++++----- utf8-1.2.3/utf8/src/utf8lite/src/private/combining.h | 103 utf8-1.2.3/utf8/src/utf8lite/src/private/decompose.h | 3051 ++++++++---------- utf8-1.2.3/utf8/src/utf8lite/src/private/emojiprop.h | 22 utf8-1.2.3/utf8/src/utf8lite/src/private/graphbreak.h | 186 - utf8-1.2.3/utf8/src/utf8lite/src/private/wordbreak.h | 442 +- utf8-1.2.3/utf8/tests/testthat/_snaps/ansi |only utf8-1.2.3/utf8/tests/testthat/_snaps/unicode |only utf8-1.2.3/utf8/tests/testthat/test-utf8_format.R | 35 16 files changed, 3208 insertions(+), 2847 deletions(-)
Title: Functions to Work with NCBI Accessions and Taxonomy
Description: Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.
Author: Scott Sherrill-Mix [aut, cre]
Maintainer: Scott Sherrill-Mix <shescott@upenn.edu>
Diff between taxonomizr versions 0.9.3 dated 2022-06-26 and 0.10.2 dated 2023-01-31
DESCRIPTION | 12 +- MD5 | 35 +++--- NAMESPACE | 2 R/taxa.R | 241 +++++++++++++++++++++++++++++++++++++++++---- README.md | 167 +++++++++++++++++++++++++++++++ build/vignette.rds |binary inst/doc/usage.R | 19 +++ inst/doc/usage.Rmd | 149 +++++++++++++++++++++++++++ inst/doc/usage.html | 169 ++++++++++++++++++++++++------- man/getAccession2taxid.Rd | 7 - man/getCommon.Rd |only man/getDescendants.Rd |only man/getId.Rd | 2 man/getNamesAndNodes.Rd | 7 - man/getTaxonomy.Rd | 2 man/prepareDatabase.Rd | 1 man/resumableDownload.Rd |only man/streamingRead.Rd | 2 tests/testthat/test_taxa.R | 106 ++++++++++++++++++- vignettes/usage.Rmd | 149 +++++++++++++++++++++++++++ 20 files changed, 975 insertions(+), 95 deletions(-)
Title: Harvest Metadata Using OAI-PMH Version 2.0
Description: Harvest metadata using the Open Archives Initiative Protocol for Metadata
Harvesting (OAI-PMH) version 2.0 (for more information, see
<https://www.openarchives.org/OAI/openarchivesprotocol.html>).
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between OAIHarvester versions 0.3-3 dated 2021-10-21 and 0.3-4 dated 2023-01-31
DESCRIPTION | 6 +- MD5 | 22 ++++---- R/pmh.R | 2 build/vignette.rds |binary inst/doc/oaih.R | 82 ++++++++++++++++--------------- inst/doc/oaih.Rnw | 136 ++++++++++++++++++----------------------------------- inst/doc/oaih.pdf |binary man/serialize.Rd | 2 man/transform.Rd | 4 - man/verb.Rd | 16 +++--- vignettes/oaih.Rnw | 136 ++++++++++++++++++----------------------------------- vignettes/oaih.bib | 14 ++--- 12 files changed, 171 insertions(+), 249 deletions(-)
Title: Render Markdown with 'commonmark'
Description: Render Markdown to full HTML documents with the 'commonmark'
package. Markdown is a plain-text formatting
syntax that can be converted to 'XHTML' or other formats. See
<https://en.wikipedia.org/wiki/Markdown> for more information about Markdown.
Author: JJ Allaire [aut],
Jeffrey Horner [aut],
Yihui Xie [aut, cre] ,
Henrik Bengtsson [ctb],
Jim Hester [ctb],
Yixuan Qiu [ctb],
Kohske Takahashi [ctb],
Adam November [ctb],
Nacho Caballero [ctb],
Jeroen Ooms [ctb],
Thomas Leeper [ctb],
Joe Cheng [ctb],
An [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between markdown versions 1.4 dated 2022-11-16 and 1.5 dated 2023-01-31
markdown-1.4/markdown/inst/resources/markdown.css |only markdown-1.5/markdown/DESCRIPTION | 10 - markdown-1.5/markdown/MD5 | 24 +-- markdown-1.5/markdown/NEWS.md | 22 ++ markdown-1.5/markdown/R/old.R | 22 ++ markdown-1.5/markdown/R/render.R | 135 ++++++++++-------- markdown-1.5/markdown/R/utils.R | 66 +++----- markdown-1.5/markdown/inst/doc/markdown-examples.html | 28 +++ markdown-1.5/markdown/inst/doc/markdown-output.html | 28 +++ markdown-1.5/markdown/inst/resources/default.css |only markdown-1.5/markdown/inst/resources/markdown.html | 23 ++- markdown-1.5/markdown/inst/resources/slides.css |only markdown-1.5/markdown/inst/resources/slides.js |only markdown-1.5/markdown/man/mark.Rd | 24 +-- markdown-1.5/markdown/man/renderMarkdown.Rd | 21 ++ 15 files changed, 264 insertions(+), 139 deletions(-)
Title: Tools for HLA Data
Description: A streamlined tool for eplet analysis of donor and recipient HLA (human leukocyte antigen) mismatch. Messy, low-resolution HLA typing data is cleaned, and imputed to high-resolution using the NMDP (National Marrow Donor Program) haplotype reference database <https://haplostats.org/haplostats>. High resolution data is analyzed for overall or single antigen eplet mismatch using a reference table (currently supporting 'HLAMatchMaker' <http://www.epitopes.net> versions 2 and 3). Data can enter or exit the workflow at different points depending on the user's aims and initial data quality.
Author: Joan Zhang [aut, cre],
Aileen Johnson [aut],
Christian P Larsen [cph, aut]
Maintainer: Joan Zhang <joan.zhang@emory.edu>
Diff between hlaR versions 0.1.6 dated 2022-12-20 and 1.0.0 dated 2023-01-31
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 1 + R/eplet-MHC-I.R | 3 ++- R/eplet-MHC-II.R | 6 ++++-- R/utils.R | 8 ++++++++ man/utils.Rd | 8 +++++++- 7 files changed, 32 insertions(+), 14 deletions(-)
Title: Spatial Ecology Miscellaneous Methods
Description: Collection of R functions and data sets for the support of spatial ecology analyses with a focus on pre, core and post modelling analyses of species distribution, niche quantification and community assembly. Written by current and former members and collaborators of the ecospat group of Antoine Guisan, Department of Ecology and Evolution (DEE) and Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Switzerland. Read Di Cola et al. (2016) <doi:10.1111/ecog.02671> for details.
Author: Olivier Broennimann [cre, aut, ctb],
Valeria Di Cola [aut, ctb],
Blaise Petitpierre [ctb],
Frank Breiner [ctb],
Daniel Scherrer [ctb],
Manuela D`Amen [ctb],
Christophe Randin [ctb],
Robin Engler [ctb],
Wim Hordijk [ctb],
Heidi Mod [ctb],
Julien Potti [...truncated...]
Maintainer: Olivier Broennimann <olivier.broennimann@unil.ch>
Diff between ecospat versions 3.4 dated 2022-11-07 and 3.5 dated 2023-01-31
DESCRIPTION | 11 ++-- MD5 | 30 ++++++------ NAMESPACE | 6 +- NEWS | 11 ++++ R/ecospat.CCV.R | 46 ++++++++++--------- R/ecospat.ESM.R | 79 ++++++++++++++++++++-------------- R/ecospat.ESM.threshold.R | 2 R/ecospat.eval.R | 26 ++++++----- inst/doc/vignette_ecospat_package.pdf |binary man/ecospat.CCV.modeling.Rd | 4 - man/ecospat.ESM.EnsembleModeling.Rd | 2 man/ecospat.ESM.Modeling.Rd | 4 - man/ecospat.meva.table.Rd | 1 man/ecospat.rcls.grd.Rd | 8 ++- man/ecospat.recstrat_prop.Rd | 9 +++ man/ecospat.recstrat_regl.Rd | 9 +++ 16 files changed, 147 insertions(+), 101 deletions(-)
Title: Prediction Intervals
Description: An implementation of prediction intervals for overdispersed count data,
for overdispersed binomial data and for linear random effects models.
Author: Max Menssen [aut, cre]
Maintainer: Max Menssen <menssen@cell.uni-hannover.de>
Diff between predint versions 1.1.1 dated 2022-06-24 and 2.0.0 dated 2023-01-31
predint-1.1.1/predint/tests/testthat/test-quantile_calibration.R |only predint-2.0.0/predint/DESCRIPTION | 10 predint-2.0.0/predint/MD5 | 125 +- predint-2.0.0/predint/NAMESPACE | 12 predint-2.0.0/predint/NEWS.md | 15 predint-2.0.0/predint/R/as.data.frame.predint.R |only predint-2.0.0/predint/R/bb_pi.R |only predint-2.0.0/predint/R/beta_bin_pi.R | 589 +++------ predint-2.0.0/predint/R/bisection.R |only predint-2.0.0/predint/R/boot_predint.R |only predint-2.0.0/predint/R/coverage_prob.R |only predint-2.0.0/predint/R/data_documentation.R | 45 predint-2.0.0/predint/R/lmer_bs.R | 2 predint-2.0.0/predint/R/lmer_pi.R | 28 predint-2.0.0/predint/R/lmer_pi_futmat.R | 558 ++------- predint-2.0.0/predint/R/lmer_pi_futvec.R | 538 ++------ predint-2.0.0/predint/R/lmer_pi_unstruc.R | 533 ++------ predint-2.0.0/predint/R/normal_pi.R |only predint-2.0.0/predint/R/pi_rho_est.R | 2 predint-2.0.0/predint/R/plot.predint.R |only predint-2.0.0/predint/R/print.predint.R |only predint-2.0.0/predint/R/qb_pi.R |only predint-2.0.0/predint/R/qp_pi.R |only predint-2.0.0/predint/R/quasi_bin_pi.R | 569 +++------ predint-2.0.0/predint/R/quasi_pois_pi.R | 605 ++++------ predint-2.0.0/predint/R/rbbinom.R | 8 predint-2.0.0/predint/R/rqbinom.R | 2 predint-2.0.0/predint/R/rqpois.R | 102 + predint-2.0.0/predint/R/summary.predint.R |only predint-2.0.0/predint/README.md | 229 ++- predint-2.0.0/predint/build/partial.rdb |binary predint-2.0.0/predint/data/qp_dat1.RData |binary predint-2.0.0/predint/data/qp_dat2.RData |binary predint-2.0.0/predint/man/as.data.frame.predint.Rd |only predint-2.0.0/predint/man/bb_dat1.Rd | 3 predint-2.0.0/predint/man/bb_dat2.Rd | 3 predint-2.0.0/predint/man/bb_pi.Rd |only predint-2.0.0/predint/man/beta_bin_pi.Rd | 87 - predint-2.0.0/predint/man/bisection.Rd |only predint-2.0.0/predint/man/boot_predint.Rd |only predint-2.0.0/predint/man/c2_dat1.Rd | 3 predint-2.0.0/predint/man/c2_dat2.Rd | 3 predint-2.0.0/predint/man/c2_dat3.Rd | 3 predint-2.0.0/predint/man/c2_dat4.Rd | 4 predint-2.0.0/predint/man/figures/README-unnamed-chunk-2-1.png |only predint-2.0.0/predint/man/figures/README-unnamed-chunk-4-1.png |only predint-2.0.0/predint/man/lmer_bs.Rd | 2 predint-2.0.0/predint/man/lmer_pi.Rd | 25 predint-2.0.0/predint/man/lmer_pi_futmat.Rd | 89 - predint-2.0.0/predint/man/lmer_pi_futvec.Rd | 83 - predint-2.0.0/predint/man/lmer_pi_unstruc.Rd | 75 - predint-2.0.0/predint/man/normal_pi.Rd |only predint-2.0.0/predint/man/pi_rho_est.Rd | 2 predint-2.0.0/predint/man/plot.predint.Rd |only predint-2.0.0/predint/man/print.predint.Rd |only predint-2.0.0/predint/man/qb_dat1.Rd | 5 predint-2.0.0/predint/man/qb_dat2.Rd | 3 predint-2.0.0/predint/man/qb_pi.Rd |only predint-2.0.0/predint/man/qp_dat1.Rd | 9 predint-2.0.0/predint/man/qp_dat2.Rd | 9 predint-2.0.0/predint/man/qp_pi.Rd |only predint-2.0.0/predint/man/quasi_bin_pi.Rd | 83 - predint-2.0.0/predint/man/quasi_pois_pi.Rd | 93 - predint-2.0.0/predint/man/rbbinom.Rd | 8 predint-2.0.0/predint/man/rqbinom.Rd | 2 predint-2.0.0/predint/man/rqpois.Rd | 32 predint-2.0.0/predint/man/summary.predint.Rd |only predint-2.0.0/predint/tests/testthat/test-as.data.frame.R |only predint-2.0.0/predint/tests/testthat/test-beta_bin_pi.R | 108 - predint-2.0.0/predint/tests/testthat/test-lmer_pi_futmat.R | 113 + predint-2.0.0/predint/tests/testthat/test-lmer_pi_futvec.R | 112 - predint-2.0.0/predint/tests/testthat/test-lmer_pi_unstruc.R | 102 - predint-2.0.0/predint/tests/testthat/test-plot.R |only predint-2.0.0/predint/tests/testthat/test-quasi_bin_pi.R | 112 - predint-2.0.0/predint/tests/testthat/test-quasi_pois_pi.R | 98 - predint-2.0.0/predint/tests/testthat/test-quasi_pois_sampling.R | 10 predint-2.0.0/predint/tests/testthat/test-summary.R |only 77 files changed, 2214 insertions(+), 3039 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: Jose Pinheiro [aut] ,
Douglas Bates [aut] ,
Saikat DebRoy [ctb] ,
Deepayan Sarkar [ctb] ,
EISPACK authors [ctb] ,
Siem Heisterkamp [ctb] ,
Bert Van Willigen [ctb] ,
Johannes Ranke [ctb] ),
R Core Team [aut, cre]
Maintainer: R Core Team <R-core@R-project.org>
Diff between nlme versions 3.1-161 dated 2022-12-15 and 3.1-162 dated 2023-01-31
ChangeLog | 26 +++++++++++++++++++-- DESCRIPTION | 8 +++--- MD5 | 53 ++++++++++++++++++++++---------------------- NAMESPACE | 19 +++++++++------ R/corStruct.R | 6 ++++ R/groupedData.R | 32 +++++++++++--------------- R/zzMethods.R | 1 man/Coef.Rd | 13 +++++----- man/Initialize.corStruct.Rd | 1 man/coef.corStruct.Rd | 2 - man/corClasses.Rd | 10 ++++---- man/corMatrix.corStruct.Rd | 1 man/gnls.Rd | 7 ++--- man/groupedData.Rd | 3 -- man/lmList.Rd | 4 +++ man/lmList.groupedData.Rd | 2 - man/lme.Rd | 6 ++++ man/lme.groupedData.Rd | 6 ++-- man/lme.lmList.Rd | 6 ++-- man/logDet.corStruct.Rd | 1 man/nlme-deprecated.Rd |only man/nlme.Rd | 11 +++++---- man/nlme.nlsList.Rd | 6 ++-- man/nlsList.Rd | 4 +++ man/recalc.corStruct.Rd | 1 man/summary.corStruct.Rd | 11 ++++----- src/matrix.h | 4 +-- tests/data.frame.R | 3 ++ 28 files changed, 141 insertions(+), 106 deletions(-)
Title: Longitudinal Drift-Diffusion Mixed Models (LDDMM)
Description: Implementation of the drift-diffusion mixed model for category learning as described in Paulon et al. (2021) <doi:10.1080/01621459.2020.1801448>.
Author: Giorgio Paulon [aut, cre],
Abhra Sarkar [aut, ctb]
Maintainer: Giorgio Paulon <giorgio.paulon@utexas.edu>
Diff between lddmm versions 0.2.0 dated 2023-01-28 and 0.2.1 dated 2023-01-31
DESCRIPTION | 13 ++++++------- LICENSE | 2 +- MD5 | 24 ++++++++++++------------ R/data.R | 2 +- R/fcts.R | 19 ++++++++++++------- README.md | 7 ++++--- man/LDDMM.Rd | 9 +++++++-- man/data.Rd | 2 +- man/extract_post_draws.Rd | 2 +- man/extract_post_mean.Rd | 2 +- man/plot_RT.Rd | 2 +- man/plot_accuracy.Rd | 2 +- man/plot_post_pars.Rd | 2 +- 13 files changed, 49 insertions(+), 39 deletions(-)
Title: Factor-Adjusted Network Estimation and Forecasting for
High-Dimensional Time Series
Description: Implements methods for network estimation and forecasting of high-dimensional time series
exhibiting strong serial and cross-sectional correlations under a factor-adjusted vector autoregressive model.
See Barigozzi, Cho and Owens (2022) <arXiv:2201.06110> for further descriptions of FNETS methodology and
Owens, Cho and Barigozzi (2023) <arXiv:2301.11675> accompanying the R package.
Author: Matteo Barigozzi [aut],
Haeran Cho [cre, aut],
Dom Owens [aut]
Maintainer: Haeran Cho <haeran.cho@bristol.ac.uk>
Diff between fnets versions 0.1.1 dated 2023-01-26 and 0.1.2 dated 2023-01-31
DESCRIPTION | 8 ++++---- MD5 | 42 +++++++++++++++++++++--------------------- R/common.R | 4 ++-- R/factor.R | 8 ++++---- R/factor_number.R | 4 ++-- R/fnets.R | 4 ++-- R/idio.R | 7 ++++--- R/omega.R | 4 ++-- R/sim.R | 2 +- man/abc.factor.number.Rd | 2 +- man/common.irf.estimation.Rd | 2 +- man/common.predict.Rd | 2 +- man/factor.number.Rd | 2 +- man/fnets.Rd | 2 +- man/fnets.factor.model.Rd | 4 ++-- man/fnets.var.Rd | 2 +- man/idio.predict.Rd | 2 +- man/par.lrpc.Rd | 4 ++-- man/plot.fnets.Rd | 2 +- man/predict.fm.Rd | 2 +- man/sim.unrestricted.Rd | 2 +- man/threshold.Rd | 2 +- 22 files changed, 57 insertions(+), 56 deletions(-)
Title: Tools for Nonparametric Martingale Posterior Sampling
Description: Performs Bayesian nonparametric density estimation using Martingale
posterior distributions including the Copula Resampling (CopRe) algorithm.
Also included are a Gibbs sampler for the marginal Gibbs-type mixture model and
an extension to include full uncertainty quantification via a predictive
sequence resampling (SeqRe) algorithm. The CopRe and SeqRe samplers generate
random nonparametric distributions as output, leading to complete nonparametric
inference on posterior summaries. Routines for calculating arbitrary
functionals from the sampled distributions are included as well as an important
algorithm for finding the number and location of modes, which can then be used
to estimate the clusters in the data using, for example, k-means.
Implements work developed in Moya B., Walker S. G. (2022).
<doi:10.48550/arxiv.2206.08418>, Fong, E., Holmes, C., Walker, S. G. (2021)
<doi:10.48550/arxiv.2103.15671>, and Escobar M. D., West, M. (1995)
<doi:10.1080/01621459.1995.10476550 [...truncated...]
Author: Blake Moya [cre, aut],
The University of Texas at Austin [cph, fnd]
Maintainer: Blake Moya <blakemoya@utexas.edu>
Diff between copre versions 0.1.0 dated 2022-08-16 and 0.2.0 dated 2023-01-31
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Title: Computer Algebra
Description: Computer algebra via the 'SymPy' library (<https://www.sympy.org/>).
This makes it possible to solve equations symbolically,
find symbolic integrals, symbolic sums and other important quantities.
Author: Mikkel Meyer Andersen [aut, cre, cph],
Soeren Hoejsgaard [aut, cph]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between caracas versions 1.1.2 dated 2022-02-11 and 2.0.0 dated 2023-01-31
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Title: WordNet Interface
Description: An interface to WordNet using the Jawbone Java API to WordNet.
WordNet (<https://wordnet.princeton.edu/>) is a large lexical database of
English. Nouns, verbs, adjectives and adverbs are grouped into sets of
cognitive synonyms (synsets), each expressing a distinct concept. Synsets
are interlinked by means of conceptual-semantic and lexical relations.
Please note that WordNet(R) is a registered tradename. Princeton
University makes WordNet available to research and commercial users
free of charge provided the terms of their license
(<https://wordnet.princeton.edu/license-and-commercial-use>) are followed,
and proper reference is made to the project using an appropriate
citation (<https://wordnet.princeton.edu/citing-wordnet>).
Author: Ingo Feinerer [aut],
Kurt Hornik [aut, cre] ,
Mike Wallace [ctb, cph]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between wordnet versions 0.1-15 dated 2020-12-04 and 0.1-16 dated 2023-01-31
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- build/vignette.rds |binary inst/CITATION | 19 +++---------------- inst/doc/wordnet.pdf |binary man/getDict.Rd | 2 +- man/initDict.Rd | 2 +- man/setDict.Rd | 2 +- 8 files changed, 16 insertions(+), 29 deletions(-)
Title: Explore 'Wikidata' Through Tidy Data Frames
Description: Query 'Wikidata' API <https://www.wikidata.org/wiki/Wikidata:Main_Page> with ease, get tidy data frames in response, and cache data in a local database.
Author: Giorgio Comai [aut, cre, cph] ,
EDJNet [fnd]
Maintainer: Giorgio Comai <giorgio.comai@cci.tn.it>
Diff between tidywikidatar versions 0.5.5 dated 2022-10-31 and 0.5.6 dated 2023-01-31
DESCRIPTION | 10 - MD5 | 41 ++-- NEWS.md | 5 R/tw_cache_indexing.R | 2 R/tw_caching.R | 1 R/tw_connect_to_cache.R | 2 R/tw_get.R | 24 ++ R/tw_get_others.R | 3 R/tw_search.R | 15 + README.md | 364 ++++++++++++++++++++++-------------------- build/vignette.rds |binary inst/doc/caching.R | 45 ++--- inst/doc/caching.Rmd | 45 ++--- inst/doc/caching.html | 167 ++++++++++--------- inst/doc/wikipedia_start.html | 111 ++++++------ man/tw_connect_to_cache.Rd | 2 man/tw_get_single.Rd | 2 man/tw_get_wikipedia.Rd | 4 man/tw_set_cache_db.Rd | 1 tests/testthat/test-get.R | 2 tests/testthat/test-manual.R |only vignettes/caching.Rmd | 45 ++--- 22 files changed, 485 insertions(+), 406 deletions(-)
Title: N-Gram Based Text Categorization
Description: Text categorization based on n-grams.
Author: Kurt Hornik [aut, cre] ,
Johannes Rauch [aut],
Christian Buchta [aut],
Ingo Feinerer [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between textcat versions 1.0-7 dated 2020-12-04 and 1.0-8 dated 2023-01-31
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ build/partial.rdb |binary data/ECIMCI_profiles.rda |binary data/TC_byte_profiles.rda |binary data/TC_char_profiles.rda |binary inst/CITATION | 10 +++++++--- 7 files changed, 19 insertions(+), 14 deletions(-)
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre] ,
Ingo Feinerer [aut] ,
Martin Kober [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between skmeans versions 0.2-14 dated 2021-11-16 and 0.2-15 dated 2023-01-31
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- build/partial.rdb |binary inst/CITATION | 10 +++++++--- man/skmeans.Rd | 2 +- 5 files changed, 18 insertions(+), 13 deletions(-)
Title: R/Weka Interface
Description: An R interface to Weka (Version 3.9.3).
Weka is a collection of machine learning algorithms for data mining
tasks written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package 'RWeka' contains the interface code, the
Weka jar is in a separate package 'RWekajars'. For more information
on Weka see <https://www.cs.waikato.ac.nz/ml/weka/>.
Author: Kurt Hornik [aut, cre] ,
Christian Buchta [ctb],
Torsten Hothorn [ctb],
Alexandros Karatzoglou [ctb],
David Meyer [ctb],
Achim Zeileis [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between RWeka versions 0.4-44 dated 2021-11-16 and 0.4-45 dated 2023-01-31
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 8 ++++++-- inst/doc/RWeka.pdf |binary man/Weka_classifier_rules.Rd | 6 +++--- 8 files changed, 24 insertions(+), 16 deletions(-)
Title: Radiocarbon Calibration Curves
Description: The IntCal20 radiocarbon calibration curves (Reimer et al. 2020 <doi:10.1017/RDC.2020.68>) are provided as a data package, together with previous IntCal curves (IntCal13, IntCal09, IntCal04, IntCal98) and postbomb curves. Also provided are functions to copy the curves into memory, to plot the curves and their underlying data, to calibrate radiocarbon dates and to transform between different radiocarbon 'domains'.
Author: Maarten Blaauw [aut, cre]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rintcal versions 0.5.2 dated 2022-12-01 and 0.5.3 dated 2023-01-31
DESCRIPTION | 10 ++-- MD5 | 33 ++++++------- NAMESPACE | 2 NEWS.md | 6 ++ R/data.R | 4 - R/plots.R | 111 ++++++++++++++++++++++++++++++++++++++++----- R/rintcal.R | 24 ++++++--- data/intcal.rda |binary inst/doc/calculations.R | 11 +++- inst/doc/calculations.Rmd | 23 ++++++--- inst/doc/calculations.html | 25 ++++++---- inst/doc/intro.Rmd | 14 ++--- inst/doc/intro.html | 16 +++--- man/ccurve.Rd | 14 ++--- man/draw.D14C.Rd |only man/draw.dates.Rd | 5 +- vignettes/calculations.Rmd | 23 ++++++--- vignettes/intro.Rmd | 14 ++--- 18 files changed, 236 insertions(+), 99 deletions(-)
Title: Kernel-Based Machine Learning Lab
Description: Kernel-based machine learning methods for classification,
regression, clustering, novelty detection, quantile regression
and dimensionality reduction. Among other methods 'kernlab'
includes Support Vector Machines, Spectral Clustering, Kernel
PCA, Gaussian Processes and a QP solver.
Author: Alexandros Karatzoglou [aut, cre],
Alex Smola [aut],
Kurt Hornik [aut] ,
National ICT Australia [cph],
Michael A. Maniscalco [ctb, cph],
Choon Hui Teo [ctb]
Maintainer: Alexandros Karatzoglou <alexandros.karatzoglou@gmail.com>
Diff between kernlab versions 0.9-31 dated 2022-06-08 and 0.9-32 dated 2023-01-31
DESCRIPTION | 13 +++++++------ MD5 | 37 +++++++++++++++++++------------------ build/partial.rdb |only build/vignette.rds |binary data/income.rda |binary data/musk.rda |binary data/promotergene.rda |binary data/reuters.rda |binary data/spam.rda |binary data/spirals.rda |binary data/ticdata.rda |binary inst/CITATION | 11 ++++++----- inst/doc/kernlab.pdf |binary man/couple.Rd | 2 +- man/kmmd.Rd | 2 +- man/kpca.Rd | 2 +- man/ksvm.Rd | 11 +++++------ man/predict.ksvm.Rd | 9 +++++---- man/ranking.Rd | 2 +- man/specc.Rd | 2 +- 20 files changed, 47 insertions(+), 44 deletions(-)
Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre] ,
Walter Boehm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between clue versions 0.3-63 dated 2022-11-19 and 0.3-64 dated 2023-01-31
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/CITATION | 6 ++---- inst/doc/clue.pdf |binary 4 files changed, 8 insertions(+), 10 deletions(-)
Title: Removal of Unwanted Technical Variation from UK Biobank NMR
Metabolomics Biomarker Data
Description: A suite of utilities for working with the UK Biobank
<https://www.ukbiobank.ac.uk/> Nuclear Magnetic Resonance spectroscopy (NMR)
metabolomics data <https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id=220>.
Includes functions for extracting biomarkers from decoded UK Biobank field
data, removing unwanted technical variation from biomarker concentrations,
computing an extended set of lipid, fatty acid, and cholesterol fractions,
and for re-deriving composite biomarkers and ratios after adjusting data
for unwanted biological variation. For further details on methods see
Ritchie SC et al. Sci Data (2023) <doi:10.1038/s41597-023-01949-y>.
Author: Scott C Ritchie [aut, cre]
Maintainer: Scott C Ritchie <sritchie73@gmail.com>
Diff between ukbnmr versions 1.4 dated 2023-01-09 and 1.5 dated 2023-01-31
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ R/biomarker_qc.R | 12 ++++++------ R/ukbnmr.R | 10 +++++----- inst/CITATION | 5 ++++- inst/doc/ukbnmr.Rmd | 6 +++--- inst/doc/ukbnmr.html | 14 +++++++------- man/remove_technical_variation.Rd | 12 ++++++------ man/ukbnmr.Rd | 10 +++++----- vignettes/ukbnmr.Rmd | 6 +++--- 11 files changed, 58 insertions(+), 50 deletions(-)
Title: R MPFR - Multiple Precision Floating-Point Reliable
Description: Arithmetic (via S4 classes and methods) for
arbitrary precision floating point numbers, including transcendental
("special") functions. To this end, the package interfaces to
the 'LGPL' licensed 'MPFR' (Multiple Precision Floating-Point Reliable) Library
which itself is based on the 'GMP' (GNU Multiple Precision) Library.
Author: Martin Maechler [aut, cre] ,
Richard M. Heiberger [ctb] , *Bin, *Dec),
John C. Nash [ctb] , origin of unirootR),
Hans W. Borchers [ctb] ; origin of
hjkMpfr)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between Rmpfr versions 0.9-0 dated 2023-01-16 and 0.9-1 dated 2023-01-31
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- R/as.R | 2 +- build/partial.rdb |binary inst/NEWS.Rd | 9 ++++++++- inst/doc/Maechler_useR_2011-abstr.pdf |binary inst/doc/Rmpfr-pkg.pdf |binary inst/doc/log1mexp-note.pdf |binary man/fr_ld_expMpfr.Rd | 2 +- man/hjkMpfr.Rd | 5 +++-- man/qnormI.Rd | 34 +++++++++++++++++++--------------- 11 files changed, 48 insertions(+), 36 deletions(-)
Title: Functions to Make Surveys Processing Easier
Description: Set of functions to make the processing and analysis of
surveys easier : interactive shiny apps and addins for data recoding,
contingency tables, dataset metadata handling, and several convenience
functions.
Author: Julien Barnier [aut, cre],
Francois Briatte [aut],
Joseph Larmarange [aut]
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>
Diff between questionr versions 0.7.7 dated 2022-01-31 and 0.7.8 dated 2023-01-31
DESCRIPTION | 10 +- MD5 | 34 ++++---- NAMESPACE | 1 NEWS.md | 4 R/ggsurvey.R | 21 ++-- R/icut.R | 31 +++---- R/iorder.R | 31 +++---- R/irec.R | 34 +++----- R/tools.R | 178 +++++++++++++++++++++--------------------- R/utils.R | 2 build/vignette.rds |binary inst/doc/recoding_addins.html | 52 +++++++++--- man/clipcopy.Rd | 16 ++- man/duplicated2.Rd | 8 - man/ggsurvey.Rd | 8 - man/na.rm.Rd | 8 - man/rm.unused.levels.Rd | 8 - tests/testthat/test_tables.R | 95 +++++++++++----------- 18 files changed, 295 insertions(+), 246 deletions(-)
Title: Translation Layer from MATLAB to R
Description: Allows users familiar with MATLAB to use MATLAB-named functions in
R. Several basic MATLAB functions are written in this package to mimic the
behavior of their original counterparts, with more to come as this package
grows.
Author: Waldir Leoncio [aut, cre]
Maintainer: Waldir Leoncio <w.l.netto@medisin.uio.no>
Diff between matlab2r versions 1.4.0 dated 2022-12-23 and 1.5.0 dated 2023-01-31
DESCRIPTION | 6 ++-- MD5 | 16 +++++++++--- NAMESPACE | 4 +++ NEWS.md | 4 +++ R/ismember.R |only R/log2.R |only R/rem.R |only man/ismember.Rd |only man/ismembertol.Rd |only man/log2.Rd |only man/rem.Rd |only tests/testthat/test-convertedBaseFunctions.R | 34 +++++++++++++++++++++++++++ tests/testthat/test-ismember.R |only 13 files changed, 57 insertions(+), 7 deletions(-)
Title: Time Series for Data Science
Description: Accompanies the texts Time Series for Data Science with R by Woodward, Sadler and Robertson & Applied Time Series Analysis with R, 2nd edition by Woodward, Gray, and Elliott. It is helpful for data analysis and for time series instruction.
Author: Wayne Woodward
Maintainer: Bivin Sadler <bsadler@smu.edu>
Diff between tswge versions 2.0.0 dated 2022-08-09 and 2.1.0 dated 2023-01-31
DESCRIPTION | 10 - MD5 | 10 - R/fore.arima.wge.R | 371 +++++++++++++++++++++++++------------------------- R/kalman.miss.wge.R | 26 ++- R/kalman.wge.R | 22 +- R/plotts.sample.wge.R | 318 +++++++++++++++++++++--------------------- 6 files changed, 387 insertions(+), 370 deletions(-)
Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut],
Kurt Hornik [aut, cre] ,
Blake LeBaron [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tseries versions 0.10-52 dated 2022-10-10 and 0.10-53 dated 2023-01-31
tseries-0.10-52/tseries/inst |only tseries-0.10-53/tseries/ChangeLog | 6 ++++++ tseries-0.10-53/tseries/DESCRIPTION | 11 ++++++----- tseries-0.10-53/tseries/MD5 | 23 +++++++++++------------ tseries-0.10-53/tseries/build/partial.rdb |binary tseries-0.10-53/tseries/data/NelPlo.rda |binary tseries-0.10-53/tseries/data/USeconomic.rda |binary tseries-0.10-53/tseries/data/bev.rda |binary tseries-0.10-53/tseries/data/camp.rda |binary tseries-0.10-53/tseries/data/ice.river.rda |binary tseries-0.10-53/tseries/data/nino.rda |binary tseries-0.10-53/tseries/data/tcm.rda |binary tseries-0.10-53/tseries/data/tcmd.rda |binary 13 files changed, 23 insertions(+), 17 deletions(-)
Title: Reshape Disorganised Messy Data
Description: Helps the user to build and register schema descriptions of
disorganised (messy) tables. Disorganised tables are tables that are
not in a topologically coherent form, where packages such as 'tidyr' could
be used for reshaping. The schema description documents the arrangement of
input tables and is used to reshape them into a standardised (tidy) output
format.
Author: Steffen Ehrmann [aut, cre] ,
Tsvetelina Tomova [ctb],
Carsten Meyer [aut] ,
Abdualmaged Alhemiary [ctb],
Amelie Haas [ctb],
Annika Ertel [ctb],
Arne Ruemmler [ctb] ,
Caroline Busse [ctb]
Maintainer: Steffen Ehrmann <steffen.ehrmann@posteo.de>
Diff between tabshiftr versions 0.4.0 dated 2022-09-28 and 0.4.1 dated 2023-01-31
tabshiftr-0.4.0/tabshiftr/tests/testthat/test-validateSchema.R |only tabshiftr-0.4.1/tabshiftr/DESCRIPTION | 8 tabshiftr-0.4.1/tabshiftr/MD5 | 93 tabshiftr-0.4.1/tabshiftr/NAMESPACE | 204 tabshiftr-0.4.1/tabshiftr/NEWS.md | 210 tabshiftr-0.4.1/tabshiftr/R/find.R | 165 tabshiftr-0.4.1/tabshiftr/R/getClusterVar.R | 166 tabshiftr-0.4.1/tabshiftr/R/getData.R | 208 tabshiftr-0.4.1/tabshiftr/R/getGroupVar.R | 104 tabshiftr-0.4.1/tabshiftr/R/getIDVars.R | 298 tabshiftr-0.4.1/tabshiftr/R/getObsVars.R | 348 tabshiftr-0.4.1/tabshiftr/R/helpers.R | 1589 - tabshiftr-0.4.1/tabshiftr/R/reorganise.R | 214 tabshiftr-0.4.1/tabshiftr/R/schema.R | 1390 - tabshiftr-0.4.1/tabshiftr/R/setClusters.R | 192 tabshiftr-0.4.1/tabshiftr/R/setFilter.R | 152 tabshiftr-0.4.1/tabshiftr/R/setFormat.R | 124 tabshiftr-0.4.1/tabshiftr/R/setGroups.R | 106 tabshiftr-0.4.1/tabshiftr/R/setIDVar.R | 315 tabshiftr-0.4.1/tabshiftr/R/setObsVar.R | 181 tabshiftr-0.4.1/tabshiftr/R/sum.R | 104 tabshiftr-0.4.1/tabshiftr/R/validateSchema.R | 538 tabshiftr-0.4.1/tabshiftr/R/zzz.R | 8 tabshiftr-0.4.1/tabshiftr/README.md | 620 tabshiftr-0.4.1/tabshiftr/build/vignette.rds |binary tabshiftr-0.4.1/tabshiftr/data/tabs2shift.rda |binary tabshiftr-0.4.1/tabshiftr/inst/doc/tabshiftr.R | 458 tabshiftr-0.4.1/tabshiftr/inst/doc/tabshiftr.Rmd | 1130 - tabshiftr-0.4.1/tabshiftr/inst/doc/tabshiftr.html | 8379 ++++------ tabshiftr-0.4.1/tabshiftr/man/dot-eval_find.Rd | 4 tabshiftr-0.4.1/tabshiftr/man/dot-find.Rd | 169 tabshiftr-0.4.1/tabshiftr/man/setCluster.Rd | 148 tabshiftr-0.4.1/tabshiftr/man/setFilter.Rd | 106 tabshiftr-0.4.1/tabshiftr/man/setFormat.Rd | 116 tabshiftr-0.4.1/tabshiftr/man/setIDVar.Rd | 149 tabshiftr-0.4.1/tabshiftr/man/setObsVar.Rd | 163 tabshiftr-0.4.1/tabshiftr/man/validateSchema.Rd | 2 tabshiftr-0.4.1/tabshiftr/tests/testthat/test-02_column_mismatch.R | 106 tabshiftr-0.4.1/tabshiftr/tests/testthat/test-03_wide_id.R | 236 tabshiftr-0.4.1/tabshiftr/tests/testthat/test-04_listed_measured.R | 250 tabshiftr-0.4.1/tabshiftr/tests/testthat/test-05-implicit_variables.R | 144 tabshiftr-0.4.1/tabshiftr/tests/testthat/test-07_clusters.R | 369 tabshiftr-0.4.1/tabshiftr/tests/testthat/test-08_groups.R | 90 tabshiftr-0.4.1/tabshiftr/tests/testthat/test-filter.R | 328 tabshiftr-0.4.1/tabshiftr/tests/testthat/test-find.R | 261 tabshiftr-0.4.1/tabshiftr/tests/testthat/test-format.R | 58 tabshiftr-0.4.1/tabshiftr/tests/testthat/test-sum.R | 44 tabshiftr-0.4.1/tabshiftr/vignettes/tabshiftr.Rmd | 1130 - 48 files changed, 10648 insertions(+), 10529 deletions(-)
Title: Utilities for SNP-Based Kinship Analysis
Description: Utilities for single nucleotide polymorphism (SNP) based kinship analysis
testing and evaluation. The 'skater' package contains functions for importing, parsing,
and analyzing pedigree data, performing relationship degree inference, benchmarking
relationship degree classification, and summarizing identity by descent (IBD) segment data.
Package functions and methods are described in Turner et al. (2021) "skater: An R package
for SNP-based Kinship Analysis, Testing, and Evaluation" <doi:10.1101/2021.07.21.453083>.
Author: Stephen Turner [aut, cre] ,
Matthew Scholz [aut] ,
VP Nagraj [aut] ,
Signature Science, LLC. [cph]
Maintainer: Stephen Turner <vustephen@gmail.com>
Diff between skater versions 0.1.1 dated 2022-02-01 and 0.1.2 dated 2023-01-31
DESCRIPTION | 8 MD5 | 17 - NEWS.md | 4 R/ped.R | 4 R/read.R | 10 build/partial.rdb |only build/vignette.rds |binary inst/doc/basic_usage.html | 621 ++++++++++++++++++++++++++++++++++------------ man/read_map.Rd | 30 +- man/skater-package.Rd | 2 10 files changed, 513 insertions(+), 183 deletions(-)
Title: Plot the Australian Coastline and States
Description: Functions for plotting Australia's coastline and state
boundaries.
Author: Bill Venables [aut] ,
Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between oz versions 1.0-21 dated 2016-12-08 and 1.0-22 dated 2023-01-31
oz-1.0-21/oz/inst |only oz-1.0-22/oz/ChangeLog | 6 ++++++ oz-1.0-22/oz/DESCRIPTION | 11 ++++++----- oz-1.0-22/oz/MD5 | 7 +++---- oz-1.0-22/oz/R/oz.R | 2 +- 5 files changed, 16 insertions(+), 10 deletions(-)
Title: Code-Logics to Handle Ontologies
Description: Provides tools to build and work with an ontology of linked (open)
data in a tidy workflow. It is inspired by the Food and Agrilculture
Organizations (FAO) caliper platform
<https://www.fao.org/statistics/caliper/web/> and
makes use of the Simple Knowledge Organisation System (SKOS).
Author: Steffen Ehrmann [aut, cre] ,
Arne Ruemmler [aut, ctb] ,
Carsten Meyer [ctb]
Maintainer: Steffen Ehrmann <steffen.ehrmann@posteo.de>
Diff between ontologics versions 0.6.4 dated 2023-01-24 and 0.6.5 dated 2023-01-31
DESCRIPTION | 17 +++++++++++------ MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/edit_matches.R | 6 +++--- R/export_as_rdf.R | 34 +++++++++++++++++----------------- R/new_mapping.R | 5 ++++- inst/doc/create_an_ontology.html | 2 +- 7 files changed, 46 insertions(+), 34 deletions(-)
Title: Tools for Exploring Multiple Response Data
Description: Interaction and analysis of multiple response data,
along with other tools for analysing these types of data including
missing value analysis and calculation of standard errors for
a range of covariance matrix results (proportions, multinomial,
independent samples, and multiple response).
Author: Tom Elliott [aut, cre] ,
Junjie Zeng [aut] ,
Simon Potter [aut]
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightMR versions 2.2.6 dated 2022-01-18 and 2.2.7 dated 2023-01-31
DESCRIPTION | 8 +- MD5 | 25 +++---- R/barplot.R | 177 ++++++++++++++++++++++++++++++++--------------------- R/bymro.R | 24 ++++--- R/chisq.R | 2 R/ses.moecalc.R | 36 +++++----- R/toolbox.R | 44 +++++++++++-- inst |only man/barplotMR.Rd | 14 ++-- man/byMRO.Rd | 5 - man/calcmissing.Rd | 6 - man/seCovs.Rd | 2 man/seMRprops.Rd | 6 - man/substrsplit.Rd | 8 ++ 14 files changed, 223 insertions(+), 134 deletions(-)
Title: Functions for Handling Dates
Description: Functions for handling dates.
Author: Terry Therneau [aut] ,
Thomas Lumley [trl] ,
Kjetil Halvorsen [trl] ,
Kurt Hornik [trl, aut, cre] ,
R Core Team [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between date versions 1.2-41 dated 2022-12-20 and 1.2-42 dated 2023-01-31
date-1.2-41/date/inst |only date-1.2-42/date/ChangeLog | 6 ++++++ date-1.2-42/date/DESCRIPTION | 21 ++++++++++++--------- date-1.2-42/date/MD5 | 5 ++--- 4 files changed, 20 insertions(+), 12 deletions(-)
Title: Chronological Objects which Can Handle Dates and Times
Description: Provides chronological objects which can handle dates and times.
Author: David James [aut] ,
Kurt Hornik [aut, trl, cre] ,
Gabor Grothendieck [ctb],
R Core Team [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between chron versions 2.3-58 dated 2022-10-04 and 2.3-59 dated 2023-01-31
chron-2.3-58/chron/inst |only chron-2.3-59/chron/ChangeLog | 6 ++++++ chron-2.3-59/chron/DESCRIPTION | 13 +++++++------ chron-2.3-59/chron/MD5 | 5 ++--- 4 files changed, 15 insertions(+), 9 deletions(-)
Title: Serialize R Objects to JSON, JavaScript Object Notation
Description: This is a package that allows conversion to and from
data in Javascript object notation (JSON) format.
This allows R objects to be inserted into Javascript/ECMAScript/ActionScript code
and allows R programmers to read and convert JSON content to R objects.
This is an alternative to rjson package. Originally, that was too slow for converting large R objects to JSON
and was not extensible. rjson's performance is now similar to this package, and perhaps slightly faster in some cases.
This package uses methods and is readily extensible by defining methods for different classes,
vectorized operations, and C code and callbacks to R functions for deserializing JSON objects to R.
The two packages intentionally share the same basic interface. This package (RJSONIO) has many additional
options to allow customizing the generation and processing of JSON content.
This package uses libjson rather than implementing yet another JSON parser. The aim is to support
other general projects by building on [...truncated...]
Author: CRAN Team [ctb, cre] ,
Duncan Temple Lang [aut] ,
Jonathan Wallace [aut]
Maintainer: CRAN Team <CRAN@r-project.org>
Diff between RJSONIO versions 1.3-1.7 dated 2023-01-14 and 1.3-1.8 dated 2023-01-31
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/overview.html | 12 ++++++------ src/libjson/Dependencies/libbase64++/libbase64++.h | 4 ++-- 4 files changed, 14 insertions(+), 14 deletions(-)
Title: Forecasting Using Multivariate Models
Description: Functions implementing multivariate state space models for purposes of time series analysis and forecasting.
The focus of the package is on multivariate models, such as Vector Exponential Smoothing,
Vector ETS (Error-Trend-Seasonal model) etc. It currently includes Vector Exponential
Smoothing (VES, de Silva et al., 2010, <doi:10.1177/1471082X0901000401>), Vector ETS and
simulation function for VES.
Author: Ivan Svetunkov [aut, cre] ,
Kandrika Fadhlan Pritularga [aut]
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between legion versions 0.1.1 dated 2022-02-15 and 0.1.2 dated 2023-01-31
DESCRIPTION | 10 - MD5 | 34 +-- NAMESPACE | 1 NEWS | 16 + R/autovets.R | 38 ++-- R/ves.R | 57 ++++-- R/vets.R | 35 ++- R/vmethods.R | 167 ++++++++---------- R/vssFunctions.R | 9 + README.md | 10 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/legion.html | 283 ++++++++++++++++++++++++++++--- inst/doc/ves.html | 457 +++++++++++++++++++++++++++++++++++++++------------ inst/doc/vets.html | 411 +++++++++++++++++++++++++++++++++++---------- src/Makevars | 2 src/Makevars.win | 2 src/vssGeneral.cpp | 4 18 files changed, 1154 insertions(+), 382 deletions(-)
Title: Analysis of Graph-Structured Data with a Focus on
Protein-Protein Interaction Networks
Description: Provides a general toolkit for drug target identification. We include functionality to reduce large graphs to subgraphs and prioritize nodes. In addition to being optimized for use with generic graphs, we also provides support to analyze protein-protein interactions networks from online repositories. For more details on core method, refer to Weaver et al. (2021) <https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008755>.
Author: Davis Weaver [aut, cre]
Maintainer: Davis Weaver <davis.weaver@case.edu>
Diff between crosstalkr versions 1.0.0 dated 2023-01-27 and 1.0.1 dated 2023-01-31
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/filter.R | 6 ++---- R/ppi_ingest.R | 21 ++++++++------------- inst/doc/crosstalkr_vignette.html | 24 ++++++++++++------------ man/compute_crosstalk.Rd | 5 +---- man/load_ppi.Rd | 5 +---- man/prep_stringdb.Rd | 5 +---- 8 files changed, 35 insertions(+), 51 deletions(-)