Wed, 01 Mar 2023

Package renv updated to version 0.17.0 with previous version 0.16.0 dated 2022-09-29

Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create and manage project-local R libraries, save the state of these libraries to a 'lockfile', and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre], Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>

Diff between renv versions 0.16.0 dated 2022-09-29 and 0.17.0 dated 2023-03-01

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Package ggrcs updated to version 0.2.8 with previous version 0.2.7 dated 2022-12-14

Title: Draw Histograms and Restricted Cubic Splines (RCS)
Description: You can use this function to easily draw a combined histogram and restricted cubic spline. The function draws the graph through 'ggplot2'. RCS fitting requires the use of the rcs() function of the 'rms' package. Can fit cox regression, logistic regression. This method was described by Per Kragh (2003) <doi:10.1002/sim.1497>.
Author: Qiang LIU [aut, cre]
Maintainer: Qiang LIU <dege857@163.com>

Diff between ggrcs versions 0.2.7 dated 2022-12-14 and 0.2.8 dated 2023-03-01

 DESCRIPTION |    8 ++++----
 MD5         |    4 ++--
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More information about ggrcs at CRAN
Permanent link

Package funkyheatmap updated to version 0.3.0 with previous version 0.2.0 dated 2023-01-13

Title: Generating Funky Heatmaps for Data Frames
Description: Allows generating heatmap-like visualisations for benchmark data frames. Funky heatmaps can be fine-tuned by providing annotations of the columns and rows, which allows assigning multiple palettes or geometries or grouping rows and columns together in categories. Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.
Author: Robrecht Cannoodt [aut, cre] , Wouter Saelens [aut]
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>

Diff between funkyheatmap versions 0.2.0 dated 2023-01-13 and 0.3.0 dated 2023-03-01

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Package dynfeature updated to version 1.0.1 with previous version 1.0.0 dated 2021-06-14

Title: Feature Importance for Dynamic Processes
Description: Calculating feature importance scores from trajectories using the random forests algorithm and more. Saelens and Cannoodt et al. (2019) <doi:10.1038/s41587-019-0071-9>.
Author: Robrecht Cannoodt [aut, cre] , Wouter Saelens [aut]
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>

Diff between dynfeature versions 1.0.0 dated 2021-06-14 and 1.0.1 dated 2023-03-01

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Package s20x updated to version 3.1-36 with previous version 3.1-35 dated 2023-02-21

Title: Functions for University of Auckland Course STATS 201/208 Data Analysis
Description: A set of functions used in teaching STATS 201/208 Data Analysis at the University of Auckland. The functions are designed to make parts of R more accessible to a large undergraduate population who are mostly not statistics majors.
Author: Brant Deppa [aut] , James Curran [aut, cre] , Rachel Fewster [ctb], Russell Millar [ctb], Ben Stevenson [ctb], Andrew Balemi [ctb], Chris Wild [ctb], Sophie Jones [ctb], Dineika Chandra [ctr], Brendan McArdle [ctr]
Maintainer: James Curran <j.curran@auckland.ac.nz>

Diff between s20x versions 3.1-35 dated 2023-02-21 and 3.1-36 dated 2023-03-01

 DESCRIPTION                                                        |   60 
 LICENSE                                                            |  678 ++--
 MD5                                                                |  310 -
 NAMESPACE                                                          |  116 
 R/autocor.plot.R                                                   |   64 
 R/boxqq.r                                                          |  158 
 R/ciReg.R                                                          |   86 
 R/cooks20x.R                                                       |  110 
 R/crossFactors.R                                                   |  122 
 R/crosstabs.R                                                      |  148 
 R/displayPairs.R                                                   |  156 
 R/eovcheck.R                                                       |  450 +-
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 R/predictCount.R                                                   |  114 
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 R/skewness.r                                                       |   50 
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 R/summaryStats.R                                                   |  388 +-
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 demo/00Index                                                       |   88 
 demo/cs1.r                                                         |   16 
 demo/cs10.r                                                        |   14 
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 demo/cs13.r                                                        |   40 
 demo/cs14.r                                                        |   24 
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 demo/cs16.r                                                        |   44 
 demo/cs17.r                                                        |   32 
 demo/cs18.r                                                        |   24 
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 demo/cs2.r                                                         |   14 
 demo/cs20.r                                                        |   36 
 demo/cs21.r                                                        |   42 
 demo/cs22.r                                                        |   22 
 demo/cs23.r                                                        |   66 
 demo/cs24.r                                                        |   36 
 demo/cs25.r                                                        |   90 
 demo/cs26.r                                                        |   38 
 demo/cs27.r                                                        |   36 
 demo/cs28.r                                                        |   18 
 demo/cs29.r                                                        |   22 
 demo/cs3.r                                                         |   10 
 demo/cs30.r                                                        |   20 
 demo/cs31.r                                                        |   18 
 demo/cs32.r                                                        |   22 
 demo/cs33.r                                                        |   20 
 demo/cs34.r                                                        |   28 
 demo/cs35.r                                                        |   16 
 demo/cs36.r                                                        |   26 
 demo/cs37.r                                                        |   24 
 demo/cs38.r                                                        |   30 
 demo/cs39.r                                                        |   30 
 demo/cs4.r                                                         |   10 
 demo/cs40.r                                                        |   20 
 demo/cs41.r                                                        |   24 
 demo/cs42.r                                                        |   22 
 demo/cs43.r                                                        |   20 
 demo/cs5.r                                                         |   12 
 demo/cs6.r                                                         |   18 
 demo/cs7.r                                                         |   24 
 demo/cs8.r                                                         |   34 
 demo/cs9.r                                                         |   14 
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 man/airpass.df.Rd                                                  |   28 
 man/apples.df.Rd                                                   |   66 
 man/arousal.df.Rd                                                  |   40 
 man/autocorPlot.Rd                                                 |   72 
 man/beer.df.Rd                                                     |   28 
 man/body.df.Rd                                                     |   40 
 man/books.df.Rd                                                    |   46 
 man/boxqq.Rd                                                       |   88 
 man/bursary.df.Rd                                                  |   36 
 man/butterfat.df.Rd                                                |   62 
 man/camplake.df.Rd                                                 |   34 
 man/chalk.df.Rd                                                    |   36 
 man/ciReg.Rd                                                       |   68 
 man/computer.df.Rd                                                 |   38 
 man/cooks20x.Rd                                                    |  104 
 man/course.df.Rd                                                   |   58 
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 man/crossFactors.Rd                                                |  122 
 man/crosstabs.Rd                                                   |   74 
 man/diamonds.df.Rd                                                 |   32 
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 man/fruitfly.df.Rd                                                 |   64 
 man/getVersion.Rd                                                  |   38 
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 man/incomes.df.Rd                                                  |   22 
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 man/lakemary.df.Rd                                                 |   30 
 man/larain.df.Rd                                                   |   26 
 man/layout20x.Rd                                                   |   66 
 man/levene.test.Rd                                                 |   80 
 man/mazda.df.Rd                                                    |   32 
 man/mening.df.Rd                                                   |   30 
 man/mergers.df.Rd                                                  |   24 
 man/modelcheck.Rd                                                  |   92 
 man/mozart.df.Rd                                                   |   34 
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 man/oysters.df.Rd                                                  |   40 
 man/pairs20x.Rd                                                    |   68 
 man/peru.df.Rd                                                     |   40 
 man/predict20x.Rd                                                  |  126 
 man/predictCount.Rd                                                |   76 
 man/predictGLM.Rd                                                  |   76 
 man/propslsd.new.Rd                                                |   52 
 man/rain.df.Rd                                                     |   40 
 man/residPlot.Rd                                                   |   80 
 man/rowdistr.Rd                                                    |  142 
 man/rr.Rd                                                          |   24 
 man/s0x.Rd                                                         |   24 
 man/seeds.df.Rd                                                    |   40 
 man/sheep.df.Rd                                                    |   30 
 man/skewness.Rd                                                    |   60 
 man/skulls.df.Rd                                                   |   62 
 man/snapper.df.Rd                                                  |   46 
 man/soyabean.df.Rd                                                 |   40 
 man/stripqq.Rd                                                     |   80 
 man/summary1way.Rd                                                 |  126 
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 man/teach.df.Rd                                                    |   38 
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New package scperturbR with initial version 0.1.0
Package: scperturbR
Title: E-Statistics for Seurat Objects
Version: 0.1.0
Author: Stefan Peidli
Maintainer: Stefan Peidli <stefanpeidli@gmail.com>
Description: R version of 'scperturb' tool for single-cell perturbation analysis. Contains wrappers for performing E-statistics for Seurat objects. More details on the method can be found in Peidli et al. (2023) <doi:10.1101/2022.08.20.504663> and in Székely and Rizzo (2004).
License: MIT + file LICENSE
URL: https://github.com/sanderlab/scPerturb/tree/master/package_r
BugReports: https://github.com/sanderlab/scPerturb/issues
Depends: R (>= 3.5.0)
Imports: Seurat, dplyr, rdist, energy, stats
Encoding: UTF-8
Language: en-US
Suggests: testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2023-03-01 12:11:57 UTC; stefanpeidli
Repository: CRAN
Date/Publication: 2023-03-01 20:10:02 UTC

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New package rivnet with initial version 0.1.0
Package: rivnet
Title: Extract and Analyze Rivers from Elevation Data
Version: 0.1.0
Description: Seamless extraction of river networks from digital elevation models data. The package allows analysis of digital elevation models that can be either externally provided or downloaded from open source repositories (thus interfacing with the 'elevatr' package). Extraction is performed via the 'D8' flow direction algorithm of TauDEM (Terrain Analysis Using Digital Elevation Models), thus interfacing with the 'traudem' package. Resulting river networks are compatible with functions from the 'OCNet' package.
Imports: spam, raster, sf, terra, traudem, elevatr, OCNet, methods
License: MIT + file LICENSE
Encoding: UTF-8
Suggests: knitr, rmarkdown, bookdown
VignetteBuilder: knitr
URL: https://lucarraro.github.io/rivnet/
NeedsCompilation: no
Packaged: 2023-03-01 08:30:59 UTC; carrarlu
Author: Luca Carraro [cre, aut], University of Zurich [cph, fnd]
Maintainer: Luca Carraro <luca.carraro@hotmail.it>
Repository: CRAN
Date/Publication: 2023-03-01 20:00:02 UTC

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New package RegCombin with initial version 0.2.1
Package: RegCombin
Title: Partially Linear Regression under Data Combination
Version: 0.2.1
Description: We implement linear regression when the outcome of interest and some of the covariates are observed in two different datasets that cannot be linked, based on D'Haultfoeuille, Gaillac, Maurel (2022) <doi:10.3386/w29953>. The package allows for common regressors observed in both datasets, and for various shape constraints on the effect of covariates on the outcome of interest. It also provides the tools to perform a test of point identification. See the associated vignette <https://github.com/cgaillac/RegCombin/blob/master/RegCombin_vignette.pdf> for theory and code examples.
License: GPL-3
Encoding: UTF-8
Suggests: knitr, rmarkdown
Imports: dplyr,kableExtra,snowfall,RationalExp,Hmisc,geometry,pracma
NeedsCompilation: no
Packaged: 2023-03-01 11:01:07 UTC; chris
Author: Xavier D'Haultfoeuille [aut], Christophe Gaillac [aut, cre], Arnaud Maurel [aut]
Maintainer: Christophe Gaillac <christophe.gaillac@economics.ox.ac.uk>
Repository: CRAN
Date/Publication: 2023-03-01 20:00:05 UTC

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Package redcapAPI updated to version 2.4.0 with previous version 2.3.3 dated 2023-01-26

Title: Interface to 'REDCap'
Description: Access data stored in 'REDCap' databases using the Application Programming Interface (API). 'REDCap' (Research Electronic Data CAPture; <https://projectredcap.org>) is a web application for building and managing online surveys and databases developed at Vanderbilt University. The API allows users to access data and project meta data (such as the data dictionary) from the web programmatically. The 'redcapAPI' package facilitates the process of accessing data with options to prepare an analysis-ready data set consistent with the definitions in a database's data dictionary.
Author: Shawn Garbett [cre, ctb] , Benjamin Nutter [ctb, aut], Stephen Lane [ctb], Will Beasley [ctb], Jeffrey Horner [aut], Will Gray [ctb], Jeremy Stephens [ctb], Marcus Lehr [ctb]
Maintainer: Shawn Garbett <shawn.garbett@vumc.org>

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New package reactCheckbox with initial version 1.0.0
Package: reactCheckbox
Title: Checkbox Group Input for 'Shiny'
Version: 1.0.0
Description: Provides a checkbox group input for usage in a 'Shiny' application. The checkbox group has a head checkbox allowing to check or uncheck all the checkboxes in the group. The checkboxes are customizable.
License: GPL (>= 3)
Imports: htmltools, reactR, utils
Suggests: shiny
Encoding: UTF-8
URL: https://github.com/stla/reactCheckbox
BugReports: https://github.com/stla/reactCheckbox/issues
NeedsCompilation: no
Packaged: 2023-03-01 17:31:41 UTC; stla
Author: Stephane Laurent [aut, cre], Paul Popov [cph]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Repository: CRAN
Date/Publication: 2023-03-01 20:20:05 UTC

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New package ptable with initial version 1.0.0
Package: ptable
Title: Generation of Perturbation Tables for the Cell-Key Method
Version: 1.0.0
Maintainer: Tobias Enderle <tobias.enderle@destatis.de>
Description: Tabular data from statistical institutes and agencies are mostly confidential and must be protected prior to publications. The cell-key method is a post-tabular Statistical Disclosure Control perturbation technique that adds random noise to tabular data. The statistical properties of the perturbations are defined by some noise probability distributions - also referred to as perturbation tables. This tool can be used to create the perturbation tables based on a maximum entropy approach as described for example in Giessing (2016) <doi:10.1007/978-3-319-45381-1_18>. The perturbation tables created can finally be used to apply a cell-key method to frequency count or magnitude tables.
License: EUPL
URL: https://github.com/sdcTools/ptable
BugReports: https://github.com/sdcTools/ptable/issues
Depends: R(>= 3.6)
Imports: data.table, flexdashboard, ggplot2, methods, nloptr, RColorBrewer, rlang, rmarkdown
Suggests: knitr, testthat (>= 3.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
NeedsCompilation: no
Packaged: 2023-03-01 15:46:41 UTC; enderle
Author: Tobias Enderle [aut, cre]
Repository: CRAN
Date/Publication: 2023-03-01 20:10:09 UTC

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Package googleVis updated to version 0.7.1 with previous version 0.7.0 dated 2022-05-10

Title: R Interface to Google Charts
Description: R interface to Google's chart tools, allowing users to create interactive charts based on data frames. Charts are displayed locally via the R HTTP help server. A modern browser with an Internet connection is required. The data remains local and is not uploaded to Google.
Author: Markus Gesmann [aut, cre], Diego de Castillo [aut], Joe Cheng [ctb], Ashley Baldry [ctb], Durey Ingenieria [ctb]
Maintainer: Markus Gesmann <markus.gesmann@googlemail.com>

Diff between googleVis versions 0.7.0 dated 2022-05-10 and 0.7.1 dated 2023-03-01

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Package d4storagehub4R updated to version 0.4-3 with previous version 0.4-2 dated 2022-11-29

Title: Interface to 'D4Science' 'StorageHub' API
Description: Provides an interface to 'D4Science' 'StorageHub' API (<https://dev.d4science.org/>). Allows to get user profile, and perform actions over the 'StorageHub' (workspace) including creation of folders, files management (upload/update/deletion/sharing), and listing of stored resources.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>

Diff between d4storagehub4R versions 0.4-2 dated 2022-11-29 and 0.4-3 dated 2023-03-01

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Package SVDNF updated to version 0.1.4 with previous version 0.1.3 dated 2023-01-14

Title: Discrete Nonlinear Filtering for Stochastic Volatility Models
Description: Generates simulated paths from various financial stochastic volatility models with jumps and applies the discrete nonlinear filter (DNF) of Kitagawa (1987) <doi:10.1080/01621459.1987.10478534> to compute likelihood evaluations, filtering distribution estimates, and maximum likelihood parameter estimates. The algorithm is implemented following the work of Bégin and Boudreault (2021) <doi:10.1080/10618600.2020.1840995>.
Author: Louis Arsenault-Mahjoubi [aut, cre], Jean-Francois Begin [aut], Mathieu Boudreault [aut]
Maintainer: Louis Arsenault-Mahjoubi <larsenau@sfu.ca>

Diff between SVDNF versions 0.1.3 dated 2023-01-14 and 0.1.4 dated 2023-03-01

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Package IsoplotRgui updated to version 5.2 with previous version 5.1 dated 2022-10-18

Title: Web Interface to 'IsoplotR'
Description: Provides a graphical user interface to the 'IsoplotR' package for radiometric geochronology. The GUI runs in an internet browser and can either be used offline, or hosted on a server to provide online access to the 'IsoplotR' toolbox.
Author: Pieter Vermeesch [aut, cre], Tim Band [ctb]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>

Diff between IsoplotRgui versions 5.1 dated 2022-10-18 and 5.2 dated 2023-03-01

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Package dynwrap updated to version 1.2.3 with previous version 1.2.2 dated 2021-03-23

Title: Representing and Inferring Single-Cell Trajectories
Description: Provides functionality to infer trajectories from single-cell data, represent them into a common format, and adapt them. Other biological information can also be added, such as cellular grouping, RNA velocity and annotation. Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.
Author: Robrecht Cannoodt [aut, cre] , Wouter Saelens [aut]
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>

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Package dataquieR updated to version 2.0.0 with previous version 1.0.13 dated 2022-11-16

Title: Data Quality in Epidemiological Research
Description: Data quality assessments guided by a 'data quality framework introduced by Schmidt and colleagues, 2021' <doi:10.1186/s12874-021-01252-7> target the data quality dimensions integrity, completeness, consistency, and accuracy. The scope of applicable functions rests on the availability of extensive metadata which can be provided in spreadsheet tables. Either standardized (e.g. as 'html5' reports) or individually tailored reports can be generated. For an introduction into the specification of corresponding metadata, please refer to the 'package website' <https://dataquality.ship-med.uni-greifswald.de/Annotation_of_Metadata.html>.
Author: University Medicine Greifswald [cph], Elisa Kasbohm [aut] , Joany Marino [aut] , Adrian Richter [aut] , Carsten Oliver Schmidt [aut] , Stephan Struckmann [aut, cre] , German Research Foundation [fnd], National Research Data Infrastructure for Person [...truncated...]
Maintainer: Stephan Struckmann <stephan.struckmann@uni-greifswald.de>

Diff between dataquieR versions 1.0.13 dated 2022-11-16 and 2.0.0 dated 2023-03-01

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 dataquieR-2.0.0/dataquieR/DESCRIPTION                                                                                |   32 
 dataquieR-2.0.0/dataquieR/LICENSE                                                                                    |    2 
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 dataquieR-2.0.0/dataquieR/NAMESPACE                                                                                  |   77 
 dataquieR-2.0.0/dataquieR/NEWS.md                                                                                    |   27 
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 dataquieR-2.0.0/dataquieR/R/acc_distributions.R                                                                      | 1053 
 dataquieR-2.0.0/dataquieR/R/acc_end_digits.R                                                                         |   31 
 dataquieR-2.0.0/dataquieR/R/acc_loess.R                                                                              |  101 
 dataquieR-2.0.0/dataquieR/R/acc_margins.R                                                                            |  105 
 dataquieR-2.0.0/dataquieR/R/acc_multivariate_outlier.R                                                               |  136 
 dataquieR-2.0.0/dataquieR/R/acc_shape_or_scale.R                                                                     |   19 
 dataquieR-2.0.0/dataquieR/R/acc_univariate_outlier.R                                                                 |  109 
 dataquieR-2.0.0/dataquieR/R/acc_varcomp.R                                                                            |   46 
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 dataquieR-2.0.0/dataquieR/R/com_unit_missingness.R                                                                   |    4 
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 dataquieR-2.0.0/dataquieR/R/dataquieR_resultset_verify.R                                                             |   25 
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 dataquieR-2.0.0/dataquieR/R/dq_report_by.R                                                                           |   63 
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 dataquieR-2.0.0/dataquieR/R/prep_create_meta.R                                                                       |    5 
 dataquieR-2.0.0/dataquieR/R/prep_datatype_from_data.R                                                                |   18 
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 dataquieR-2.0.0/dataquieR/R/prep_dq_data_type_of.R                                                                   |only
 dataquieR-2.0.0/dataquieR/R/prep_expand_codes.R                                                                      |only
 dataquieR-2.0.0/dataquieR/R/prep_extract_cause_label_df.R                                                            |only
 dataquieR-2.0.0/dataquieR/R/prep_get_data_frame.R                                                                    |only
 dataquieR-2.0.0/dataquieR/R/prep_get_user_name.R                                                                     |only
 dataquieR-2.0.0/dataquieR/R/prep_link_escape.R                                                                       |only
 dataquieR-2.0.0/dataquieR/R/prep_list_dataframes.R                                                                   |only
 dataquieR-2.0.0/dataquieR/R/prep_load_workbook_like_file.R                                                           |only
 dataquieR-2.0.0/dataquieR/R/prep_map_labels.R                                                                        |   26 
 dataquieR-2.0.0/dataquieR/R/prep_merge_study_data.R                                                                  |only
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 dataquieR-2.0.0/dataquieR/R/prep_min_obs_level.R                                                                     |    3 
 dataquieR-2.0.0/dataquieR/R/prep_pmap.R                                                                              |    4 
 dataquieR-2.0.0/dataquieR/R/prep_prepare_dataframes.R                                                                |  257 
 dataquieR-2.0.0/dataquieR/R/prep_purge_data_frame_cache.R                                                            |only
 dataquieR-2.0.0/dataquieR/R/prep_study2meta.R                                                                        |   24 
 dataquieR-2.0.0/dataquieR/R/prep_title_escape.R                                                                      |only
 dataquieR-2.0.0/dataquieR/R/prep_valuelabels_from_data.R                                                             |    4 
 dataquieR-2.0.0/dataquieR/R/print.ReportSummaryTable.R                                                               |  226 
 dataquieR-2.0.0/dataquieR/R/print.dataquieR_result.R                                                                 |   31 
 dataquieR-2.0.0/dataquieR/R/print.dataquieR_resultset.R                                                              |  152 
 dataquieR-2.0.0/dataquieR/R/print.dataquieR_resultset2.R                                                             |only
 dataquieR-2.0.0/dataquieR/R/print.interval.R                                                                         |only
 dataquieR-2.0.0/dataquieR/R/pro_applicability_matrix.R                                                               |  154 
 dataquieR-2.0.0/dataquieR/R/reflection.R                                                                             |only
 dataquieR-2.0.0/dataquieR/R/resnames.R                                                                               |only
 dataquieR-2.0.0/dataquieR/R/resnames.dataquieR_resultset2.R                                                          |only
 dataquieR-2.0.0/dataquieR/R/summary.dataquieR_resultset.R                                                            |  247 
 dataquieR-2.0.0/dataquieR/R/summary.dataquieR_resultset2.R                                                           |only
 dataquieR-2.0.0/dataquieR/R/util_abbreviate.R                                                                        |only
 dataquieR-2.0.0/dataquieR/R/util_adjust_geom_text_for_plotly.R                                                       |only
 dataquieR-2.0.0/dataquieR/R/util_alias2caption.R                                                                     |only
 dataquieR-2.0.0/dataquieR/R/util_all_intro_vars_for_rv.R                                                             |only
 dataquieR-2.0.0/dataquieR/R/util_all_is_integer.R                                                                    |only
 dataquieR-2.0.0/dataquieR/R/util_app_cd.R                                                                            |    2 
 dataquieR-2.0.0/dataquieR/R/util_app_con_contradictions_redcap.R                                                     |only
 dataquieR-2.0.0/dataquieR/R/util_app_dc.R                                                                            |    1 
 dataquieR-2.0.0/dataquieR/R/util_app_dl.R                                                                            |    9 
 dataquieR-2.0.0/dataquieR/R/util_app_ed.R                                                                            |    1 
 dataquieR-2.0.0/dataquieR/R/util_app_hl.R                                                                            |only
 dataquieR-2.0.0/dataquieR/R/util_app_iac.R                                                                           |   15 
 dataquieR-2.0.0/dataquieR/R/util_app_iav.R                                                                           |   15 
 dataquieR-2.0.0/dataquieR/R/util_app_im.R                                                                            |   18 
 dataquieR-2.0.0/dataquieR/R/util_app_loess.R                                                                         |   24 
 dataquieR-2.0.0/dataquieR/R/util_app_mar.R                                                                           |   20 
 dataquieR-2.0.0/dataquieR/R/util_app_mol.R                                                                           |    1 
 dataquieR-2.0.0/dataquieR/R/util_app_ol.R                                                                            |    1 
 dataquieR-2.0.0/dataquieR/R/util_app_sl.R                                                                            |only
 dataquieR-2.0.0/dataquieR/R/util_app_sm.R                                                                            |    5 
 dataquieR-2.0.0/dataquieR/R/util_app_sos.R                                                                           |    1 
 dataquieR-2.0.0/dataquieR/R/util_app_vc.R                                                                            |   22 
 dataquieR-2.0.0/dataquieR/R/util_as_color.R                                                                          |only
 dataquieR-2.0.0/dataquieR/R/util_assign_levlabs.R                                                                    |   34 
 dataquieR-2.0.0/dataquieR/R/util_attach_attr.R                                                                       |only
 dataquieR-2.0.0/dataquieR/R/util_bQuote.R                                                                            |only
 dataquieR-2.0.0/dataquieR/R/util_check_data_type.R                                                                   |    8 
 dataquieR-2.0.0/dataquieR/R/util_check_group_levels.R                                                                |only
 dataquieR-2.0.0/dataquieR/R/util_combine_missing_lists.R                                                             |only
 dataquieR-2.0.0/dataquieR/R/util_condition_constructor_factory.R                                                     |only
 dataquieR-2.0.0/dataquieR/R/util_coord_flip.R                                                                        |only
 dataquieR-2.0.0/dataquieR/R/util_copy_all_deps.R                                                                     |only
 dataquieR-2.0.0/dataquieR/R/util_correct_variable_use.R                                                              |  270 
 dataquieR-2.0.0/dataquieR/R/util_count_expected_observations.R                                                       |only
 dataquieR-2.0.0/dataquieR/R/util_create_page_file.R                                                                  |only
 dataquieR-2.0.0/dataquieR/R/util_deparse1.R                                                                          |only
 dataquieR-2.0.0/dataquieR/R/util_deprecate_soft.R                                                                    |only
 dataquieR-2.0.0/dataquieR/R/util_dichotomize.R                                                                       |    2 
 dataquieR-2.0.0/dataquieR/R/util_ds1_eval_env.R                                                                      |only
 dataquieR-2.0.0/dataquieR/R/util_ensure_character.R                                                                  |only
 dataquieR-2.0.0/dataquieR/R/util_ensure_data_type.R                                                                  |only
 dataquieR-2.0.0/dataquieR/R/util_ensure_in.R                                                                         |only
 dataquieR-2.0.0/dataquieR/R/util_ensure_suggested.R                                                                  |   53 
 dataquieR-2.0.0/dataquieR/R/util_error.R                                                                             |   50 
 dataquieR-2.0.0/dataquieR/R/util_eval_rule.R                                                                         |only
 dataquieR-2.0.0/dataquieR/R/util_eval_to_dataquieR_result.R                                                          |only
 dataquieR-2.0.0/dataquieR/R/util_evaluate_calls.R                                                                    |only
 dataquieR-2.0.0/dataquieR/R/util_expect_data_frame.R                                                                 |only
 dataquieR-2.0.0/dataquieR/R/util_expect_scalar.R                                                                     |only
 dataquieR-2.0.0/dataquieR/R/util_extract_matches.R                                                                   |only
 dataquieR-2.0.0/dataquieR/R/util_filter_missing_list_table_for_rv.R                                                  |only
 dataquieR-2.0.0/dataquieR/R/util_filter_names_by_regexps.R                                                           |only
 dataquieR-2.0.0/dataquieR/R/util_find_external_functions_in_stacktrace.R                                             |   12 
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 dataquieR-2.0.0/dataquieR/R/util_find_var_by_meta.R                                                                  |only
 dataquieR-2.0.0/dataquieR/R/util_float_index_menu.R                                                                  |only
 dataquieR-2.0.0/dataquieR/R/util_generate_anchor_tag.R                                                               |only
 dataquieR-2.0.0/dataquieR/R/util_generate_calls.R                                                                    |only
 dataquieR-2.0.0/dataquieR/R/util_generate_calls_for_function.R                                                       |only
 dataquieR-2.0.0/dataquieR/R/util_generate_pages_from_report.R                                                        |only
 dataquieR-2.0.0/dataquieR/R/util_get_code_list.R                                                                     |   51 
 dataquieR-2.0.0/dataquieR/R/util_get_color_for_result.R                                                              |only
 dataquieR-2.0.0/dataquieR/R/util_get_combined_code_lists.R                                                           |only
 dataquieR-2.0.0/dataquieR/R/util_get_concept_info.R                                                                  |only
 dataquieR-2.0.0/dataquieR/R/util_get_dataquieR_result.R                                                              |   37 
 dataquieR-2.0.0/dataquieR/R/util_get_html_cell_for_result.R                                                          |only
 dataquieR-2.0.0/dataquieR/R/util_get_message_for_result.R                                                            |only
 dataquieR-2.0.0/dataquieR/R/util_get_redcap_rule_env.R                                                               |only
 dataquieR-2.0.0/dataquieR/R/util_get_var_att_names_of_level.R                                                        |    9 
 dataquieR-2.0.0/dataquieR/R/util_get_vars_in_segment.R                                                               |only
 dataquieR-2.0.0/dataquieR/R/util_gg_var_label.R                                                                      |only
 dataquieR-2.0.0/dataquieR/R/util_heatmap_1th.R                                                                       |   30 
 dataquieR-2.0.0/dataquieR/R/util_html_attr_quote_escape.R                                                            |only
 dataquieR-2.0.0/dataquieR/R/util_html_table.R                                                                        |only
 dataquieR-2.0.0/dataquieR/R/util_int_duplicate_content_dataframe.R                                                   |only
 dataquieR-2.0.0/dataquieR/R/util_int_duplicate_content_segment.R                                                     |only
 dataquieR-2.0.0/dataquieR/R/util_int_duplicate_ids_dataframe.R                                                       |only
 dataquieR-2.0.0/dataquieR/R/util_int_duplicate_ids_segment.R                                                         |only
 dataquieR-2.0.0/dataquieR/R/util_int_unexp_records_set_dataframe.R                                                   |only
 dataquieR-2.0.0/dataquieR/R/util_int_unexp_records_set_segment.R                                                     |only
 dataquieR-2.0.0/dataquieR/R/util_interpret_limits.R                                                                  |   17 
 dataquieR-2.0.0/dataquieR/R/util_interpret_range.R                                                                   |only
 dataquieR-2.0.0/dataquieR/R/util_is_integer.R                                                                        |    2 
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 dataquieR-2.0.0/dataquieR/R/util_is_numeric_in.R                                                                     |only
 dataquieR-2.0.0/dataquieR/R/util_looks_like_missing.R                                                                |    4 
 dataquieR-2.0.0/dataquieR/R/util_make_data_slot_from_table_slot.R                                                    |only
 dataquieR-2.0.0/dataquieR/R/util_make_function.R                                                                     |    8 
 dataquieR-2.0.0/dataquieR/R/util_map_all.R                                                                           |   55 
 dataquieR-2.0.0/dataquieR/R/util_map_by_largest_prefix.R                                                             |only
 dataquieR-2.0.0/dataquieR/R/util_map_labels.R                                                                        |   33 
 dataquieR-2.0.0/dataquieR/R/util_match_arg.R                                                                         |only
 dataquieR-2.0.0/dataquieR/R/util_merge_data_frame_list.R                                                             |only
 dataquieR-2.0.0/dataquieR/R/util_message.R                                                                           |only
 dataquieR-2.0.0/dataquieR/R/util_no_value_labels.R                                                                   |    2 
 dataquieR-2.0.0/dataquieR/R/util_observation_expected.R                                                              |only
 dataquieR-2.0.0/dataquieR/R/util_optimize_histogram_bins.R                                                           |only
 dataquieR-2.0.0/dataquieR/R/util_parse_assignments.R                                                                 |   39 
 dataquieR-2.0.0/dataquieR/R/util_parse_interval.R                                                                    |only
 dataquieR-2.0.0/dataquieR/R/util_parse_redcap_rule.R                                                                 |only
 dataquieR-2.0.0/dataquieR/R/util_plotly_font_size.R                                                                  |only
 dataquieR-2.0.0/dataquieR/R/util_prep_location_check.R                                                               |only
 dataquieR-2.0.0/dataquieR/R/util_prep_proportion_check.R                                                             |only
 dataquieR-2.0.0/dataquieR/R/util_pretty_vector_string.R                                                              |only
 dataquieR-2.0.0/dataquieR/R/util_rbind.R                                                                             |only
 dataquieR-2.0.0/dataquieR/R/util_recode.R                                                                            |only
 dataquieR-2.0.0/dataquieR/R/util_remove_dataquieR_result_class.R                                                     |only
 dataquieR-2.0.0/dataquieR/R/util_remove_empty_rows.R                                                                 |only
 dataquieR-2.0.0/dataquieR/R/util_remove_na_records.R                                                                 |only
 dataquieR-2.0.0/dataquieR/R/util_replace_codes_by_na.R                                                               |   65 
 dataquieR-2.0.0/dataquieR/R/util_replace_hard_limit_violations.R                                                     |only
 dataquieR-2.0.0/dataquieR/R/util_seg_table.R                                                                         |only
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 dataquieR-2.0.0/dataquieR/R/util_sort_by_order.R                                                                     |only
 dataquieR-2.0.0/dataquieR/R/util_stop_if_not.R                                                                       |only
 dataquieR-2.0.0/dataquieR/R/util_study_var2factor.R                                                                  |only
 dataquieR-2.0.0/dataquieR/R/util_table_of_vct.R                                                                      |only
 dataquieR-2.0.0/dataquieR/R/util_validate_known_meta.R                                                               |   15 
 dataquieR-2.0.0/dataquieR/R/util_validate_missing_lists.R                                                            |only
 dataquieR-2.0.0/dataquieR/R/util_variable_references.R                                                               |only
 dataquieR-2.0.0/dataquieR/R/util_view_file.R                                                                         |only
 dataquieR-2.0.0/dataquieR/R/util_warn_unordered.R                                                                    |    4 
 dataquieR-2.0.0/dataquieR/R/util_warning.R                                                                           |   53 
 dataquieR-2.0.0/dataquieR/README.md                                                                                  |   60 
 dataquieR-2.0.0/dataquieR/inst/CITATION                                                                              |   12 
 dataquieR-2.0.0/dataquieR/inst/WORDLIST                                                                              |   13 
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 dataquieR-2.0.0/dataquieR/inst/clipboard                                                                             |only
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 dataquieR-2.0.0/dataquieR/inst/default_subreport_meta_miss.Rmd                                                       |   42 
 dataquieR-2.0.0/dataquieR/inst/default_subreport_mv.Rmd                                                              |   31 
 dataquieR-2.0.0/dataquieR/inst/default_subreport_plotlist_not_mv.Rmd                                                 |    2 
 dataquieR-2.0.0/dataquieR/inst/default_subreport_table.Rmd                                                           |   11 
 dataquieR-2.0.0/dataquieR/inst/doc/DQ-report-example.R                                                               |   18 
 dataquieR-2.0.0/dataquieR/inst/doc/DQ-report-example.Rmd                                                             |   19 
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 dataquieR-2.0.0/dataquieR/inst/dqi.rds                                                                               |only
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 dataquieR-2.0.0/dataquieR/inst/menu                                                                                  |only
 dataquieR-2.0.0/dataquieR/inst/report-dt-style                                                                       |only
 dataquieR-2.0.0/dataquieR/inst/templates                                                                             |only
 dataquieR-2.0.0/dataquieR/inst/tippy                                                                                 |only
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 dataquieR-2.0.0/dataquieR/man/DATA_TYPES_OF_R_TYPE.Rd                                                                |    5 
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 dataquieR-2.0.0/dataquieR/man/DF_ID_REF_TABLE.Rd                                                                     |only
 dataquieR-2.0.0/dataquieR/man/DF_ID_VARS.Rd                                                                          |only
 dataquieR-2.0.0/dataquieR/man/DF_NAME.Rd                                                                             |only
 dataquieR-2.0.0/dataquieR/man/DF_RECORD_CHECK.Rd                                                                     |only
 dataquieR-2.0.0/dataquieR/man/DF_RECORD_COUNT.Rd                                                                     |only
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 dataquieR-2.0.0/dataquieR/man/DF_UNIQUE_ROWS.Rd                                                                      |only
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 dataquieR-2.0.0/dataquieR/man/SEGMENT_PART_VARS.Rd                                                                   |only
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 dataquieR-2.0.0/dataquieR/man/SEGMENT_RECORD_COUNT.Rd                                                                |only
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 dataquieR-2.0.0/dataquieR/man/WELL_KNOWN_META_VARIABLE_NAMES.Rd                                                      |   28 
 dataquieR-2.0.0/dataquieR/man/acc_distributions.Rd                                                                   |   74 
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 dataquieR-2.0.0/dataquieR/man/acc_distributions_prop_ecdf.Rd                                                         |only
 dataquieR-2.0.0/dataquieR/man/acc_margins.Rd                                                                         |    4 
 dataquieR-2.0.0/dataquieR/man/acc_multivariate_outlier.Rd                                                            |   23 
 dataquieR-2.0.0/dataquieR/man/acc_robust_univariate_outlier.Rd                                                       |   12 
 dataquieR-2.0.0/dataquieR/man/acc_shape_or_scale.Rd                                                                  |   14 
 dataquieR-2.0.0/dataquieR/man/acc_univariate_outlier.Rd                                                              |   12 
 dataquieR-2.0.0/dataquieR/man/acc_varcomp.Rd                                                                         |    6 
 dataquieR-2.0.0/dataquieR/man/cash-.dataquieR_result.Rd                                                              |only
 dataquieR-2.0.0/dataquieR/man/cause_label_df.Rd                                                                      |only
 dataquieR-2.0.0/dataquieR/man/check_table.Rd                                                                         |only
 dataquieR-2.0.0/dataquieR/man/com_item_missingness.Rd                                                                |   54 
 dataquieR-2.0.0/dataquieR/man/com_qualified_item_missingness.Rd                                                      |only
 dataquieR-2.0.0/dataquieR/man/com_qualified_segment_missingness.Rd                                                   |only
 dataquieR-2.0.0/dataquieR/man/com_segment_missingness.Rd                                                             |   30 
 dataquieR-2.0.0/dataquieR/man/con_contradictions.Rd                                                                  |   12 
 dataquieR-2.0.0/dataquieR/man/con_contradictions_redcap.Rd                                                           |only
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 dataquieR-2.0.0/dataquieR/man/con_hard_limits.Rd                                                                     |only
 dataquieR-2.0.0/dataquieR/man/con_inadmissible_categorical.Rd                                                        |   16 
 dataquieR-2.0.0/dataquieR/man/con_limit_deviations.Rd                                                                |   48 
 dataquieR-2.0.0/dataquieR/man/con_soft_limits.Rd                                                                     |only
 dataquieR-2.0.0/dataquieR/man/dataquieR_resultset2.Rd                                                                |only
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 dataquieR-2.0.0/dataquieR/man/dimnames.dataquieR_resultset2.Rd                                                       |only
 dataquieR-2.0.0/dataquieR/man/dot-.manual.Rd                                                                         |only
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 dataquieR-2.0.0/dataquieR/man/dot-variable_arg_roles.Rd                                                              |    2 
 dataquieR-2.0.0/dataquieR/man/dq_report.Rd                                                                           |   34 
 dataquieR-2.0.0/dataquieR/man/dq_report2.Rd                                                                          |only
 dataquieR-2.0.0/dataquieR/man/dq_report_by.Rd                                                                        |   17 
 dataquieR-2.0.0/dataquieR/man/html_dependency_report_dt.Rd                                                           |only
 dataquieR-2.0.0/dataquieR/man/int_all_datastructure_dataframe.Rd                                                     |only
 dataquieR-2.0.0/dataquieR/man/int_all_datastructure_segment.Rd                                                       |only
 dataquieR-2.0.0/dataquieR/man/int_datatype_matrix.Rd                                                                 |    7 
 dataquieR-2.0.0/dataquieR/man/int_duplicate_content.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/int_duplicate_ids.Rd                                                                   |only
 dataquieR-2.0.0/dataquieR/man/int_part_vars_structure.Rd                                                             |only
 dataquieR-2.0.0/dataquieR/man/int_sts_element_dataframe.Rd                                                           |only
 dataquieR-2.0.0/dataquieR/man/int_sts_element_segment.Rd                                                             |only
 dataquieR-2.0.0/dataquieR/man/int_unexp_elements.Rd                                                                  |only
 dataquieR-2.0.0/dataquieR/man/int_unexp_records_dataframe.Rd                                                         |only
 dataquieR-2.0.0/dataquieR/man/int_unexp_records_segment.Rd                                                           |only
 dataquieR-2.0.0/dataquieR/man/int_unexp_records_set.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/menu_env-menu.Rd                                                                       |only
 dataquieR-2.0.0/dataquieR/man/menu_env.Rd                                                                            |only
 dataquieR-2.0.0/dataquieR/man/menu_env_drop_down.Rd                                                                  |only
 dataquieR-2.0.0/dataquieR/man/menu_env_menu_entry.Rd                                                                 |only
 dataquieR-2.0.0/dataquieR/man/meta_data.Rd                                                                           |only
 dataquieR-2.0.0/dataquieR/man/meta_data_dataframe.Rd                                                                 |only
 dataquieR-2.0.0/dataquieR/man/meta_data_env.Rd                                                                       |only
 dataquieR-2.0.0/dataquieR/man/meta_data_env_co_vars.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/meta_data_env_group_vars.Rd                                                            |only
 dataquieR-2.0.0/dataquieR/man/meta_data_env_id_vars.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/meta_data_env_time_vars.Rd                                                             |only
 dataquieR-2.0.0/dataquieR/man/meta_data_segment.Rd                                                                   |only
 dataquieR-2.0.0/dataquieR/man/nres.Rd                                                                                |only
 dataquieR-2.0.0/dataquieR/man/pipeline_recursive_result.Rd                                                           |    4 
 dataquieR-2.0.0/dataquieR/man/pipeline_vectorized.Rd                                                                 |   20 
 dataquieR-2.0.0/dataquieR/man/prep_add_cause_label_df.Rd                                                             |only
 dataquieR-2.0.0/dataquieR/man/prep_add_data_frames.Rd                                                                |only
 dataquieR-2.0.0/dataquieR/man/prep_add_missing_codes.Rd                                                              |only
 dataquieR-2.0.0/dataquieR/man/prep_add_to_meta.Rd                                                                    |    9 
 dataquieR-2.0.0/dataquieR/man/prep_apply_coding.Rd                                                                   |only
 dataquieR-2.0.0/dataquieR/man/prep_check_meta_data_dataframe.Rd                                                      |only
 dataquieR-2.0.0/dataquieR/man/prep_check_meta_data_segment.Rd                                                        |only
 dataquieR-2.0.0/dataquieR/man/prep_check_meta_names.Rd                                                               |   36 
 dataquieR-2.0.0/dataquieR/man/prep_clean_labels.Rd                                                                   |    4 
 dataquieR-2.0.0/dataquieR/man/prep_datatype_from_data.Rd                                                             |    6 
 dataquieR-2.0.0/dataquieR/man/prep_deparse_assignments.Rd                                                            |only
 dataquieR-2.0.0/dataquieR/man/prep_dq_data_type_of.Rd                                                                |only
 dataquieR-2.0.0/dataquieR/man/prep_expand_codes.Rd                                                                   |only
 dataquieR-2.0.0/dataquieR/man/prep_extract_cause_label_df.Rd                                                         |only
 dataquieR-2.0.0/dataquieR/man/prep_get_data_frame.Rd                                                                 |only
 dataquieR-2.0.0/dataquieR/man/prep_get_user_name.Rd                                                                  |only
 dataquieR-2.0.0/dataquieR/man/prep_link_escape.Rd                                                                    |only
 dataquieR-2.0.0/dataquieR/man/prep_list_dataframes.Rd                                                                |only
 dataquieR-2.0.0/dataquieR/man/prep_load_workbook_like_file.Rd                                                        |only
 dataquieR-2.0.0/dataquieR/man/prep_map_labels.Rd                                                                     |   20 
 dataquieR-2.0.0/dataquieR/man/prep_merge_study_data.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/prep_meta_data_v1_to_item_level_meta_data.Rd                                           |only
 dataquieR-2.0.0/dataquieR/man/prep_prepare_dataframes.Rd                                                             |   22 
 dataquieR-2.0.0/dataquieR/man/prep_purge_data_frame_cache.Rd                                                         |only
 dataquieR-2.0.0/dataquieR/man/prep_study2meta.Rd                                                                     |    7 
 dataquieR-2.0.0/dataquieR/man/prep_title_escape.Rd                                                                   |only
 dataquieR-2.0.0/dataquieR/man/prep_valuelabels_from_data.Rd                                                          |    2 
 dataquieR-2.0.0/dataquieR/man/print.ReportSummaryTable.Rd                                                            |   78 
 dataquieR-2.0.0/dataquieR/man/print.dataquieR_result.Rd                                                              |   10 
 dataquieR-2.0.0/dataquieR/man/print.dataquieR_resultset.Rd                                                           |   13 
 dataquieR-2.0.0/dataquieR/man/print.dataquieR_resultset2.Rd                                                          |only
 dataquieR-2.0.0/dataquieR/man/print.interval.Rd                                                                      |only
 dataquieR-2.0.0/dataquieR/man/pro_applicability_matrix.Rd                                                            |   23 
 dataquieR-2.0.0/dataquieR/man/resnames.Rd                                                                            |only
 dataquieR-2.0.0/dataquieR/man/resnames.dataquieR_resultset2.Rd                                                       |only
 dataquieR-2.0.0/dataquieR/man/study_data.Rd                                                                          |only
 dataquieR-2.0.0/dataquieR/man/sub-.dataquieR_result.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/sub-.dataquieR_resultset2.Rd                                                           |only
 dataquieR-2.0.0/dataquieR/man/sub-sub-.dataquieR_result.Rd                                                           |only
 dataquieR-2.0.0/dataquieR/man/summary.dataquieR_resultset.Rd                                                         |   12 
 dataquieR-2.0.0/dataquieR/man/summary.dataquieR_resultset2.Rd                                                        |only
 dataquieR-2.0.0/dataquieR/man/util_abbreviate.Rd                                                                     |only
 dataquieR-2.0.0/dataquieR/man/util_adjust_geom_text_for_plotly.Rd                                                    |only
 dataquieR-2.0.0/dataquieR/man/util_alias2caption.Rd                                                                  |only
 dataquieR-2.0.0/dataquieR/man/util_all_intro_vars_for_rv.Rd                                                          |only
 dataquieR-2.0.0/dataquieR/man/util_all_is_integer.Rd                                                                 |only
 dataquieR-2.0.0/dataquieR/man/util_app_con_contradictions_redcap.Rd                                                  |only
 dataquieR-2.0.0/dataquieR/man/util_app_dc.Rd                                                                         |    1 
 dataquieR-2.0.0/dataquieR/man/util_app_dl.Rd                                                                         |    1 
 dataquieR-2.0.0/dataquieR/man/util_app_ed.Rd                                                                         |    1 
 dataquieR-2.0.0/dataquieR/man/util_app_hl.Rd                                                                         |only
 dataquieR-2.0.0/dataquieR/man/util_app_iac.Rd                                                                        |    1 
 dataquieR-2.0.0/dataquieR/man/util_app_iav.Rd                                                                        |    1 
 dataquieR-2.0.0/dataquieR/man/util_app_loess.Rd                                                                      |    1 
 dataquieR-2.0.0/dataquieR/man/util_app_mar.Rd                                                                        |    1 
 dataquieR-2.0.0/dataquieR/man/util_app_mol.Rd                                                                        |    1 
 dataquieR-2.0.0/dataquieR/man/util_app_ol.Rd                                                                         |    1 
 dataquieR-2.0.0/dataquieR/man/util_app_sl.Rd                                                                         |only
 dataquieR-2.0.0/dataquieR/man/util_app_sos.Rd                                                                        |    1 
 dataquieR-2.0.0/dataquieR/man/util_app_vc.Rd                                                                         |    1 
 dataquieR-2.0.0/dataquieR/man/util_as_color.Rd                                                                       |only
 dataquieR-2.0.0/dataquieR/man/util_assign_levlabs.Rd                                                                 |    6 
 dataquieR-2.0.0/dataquieR/man/util_attach_attr.Rd                                                                    |only
 dataquieR-2.0.0/dataquieR/man/util_bQuote.Rd                                                                         |only
 dataquieR-2.0.0/dataquieR/man/util_check_data_type.Rd                                                                |    5 
 dataquieR-2.0.0/dataquieR/man/util_check_group_levels.Rd                                                             |only
 dataquieR-2.0.0/dataquieR/man/util_combine_missing_lists.Rd                                                          |only
 dataquieR-2.0.0/dataquieR/man/util_condition_constructor_factory.Rd                                                  |only
 dataquieR-2.0.0/dataquieR/man/util_coord_flip.Rd                                                                     |only
 dataquieR-2.0.0/dataquieR/man/util_copy_all_deps.Rd                                                                  |only
 dataquieR-2.0.0/dataquieR/man/util_correct_variable_use.Rd                                                           |   27 
 dataquieR-2.0.0/dataquieR/man/util_count_expected_observations.Rd                                                    |only
 dataquieR-2.0.0/dataquieR/man/util_create_page_file.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/util_deparse1.Rd                                                                       |only
 dataquieR-2.0.0/dataquieR/man/util_deprecate_soft.Rd                                                                 |only
 dataquieR-2.0.0/dataquieR/man/util_ds1_eval_env.Rd                                                                   |only
 dataquieR-2.0.0/dataquieR/man/util_ensure_character.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/util_ensure_data_type.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/util_ensure_in.Rd                                                                      |only
 dataquieR-2.0.0/dataquieR/man/util_ensure_suggested.Rd                                                               |   29 
 dataquieR-2.0.0/dataquieR/man/util_error.Rd                                                                          |   16 
 dataquieR-2.0.0/dataquieR/man/util_eval_rule.Rd                                                                      |only
 dataquieR-2.0.0/dataquieR/man/util_eval_to_dataquieR_result.Rd                                                       |only
 dataquieR-2.0.0/dataquieR/man/util_evaluate_calls.Rd                                                                 |only
 dataquieR-2.0.0/dataquieR/man/util_expect_data_frame.Rd                                                              |only
 dataquieR-2.0.0/dataquieR/man/util_expect_scalar.Rd                                                                  |only
 dataquieR-2.0.0/dataquieR/man/util_extract_matches.Rd                                                                |only
 dataquieR-2.0.0/dataquieR/man/util_filter_missing_list_table_for_rv.Rd                                               |only
 dataquieR-2.0.0/dataquieR/man/util_filter_names_by_regexps.Rd                                                        |only
 dataquieR-2.0.0/dataquieR/man/util_find_var_by_meta.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/util_float_index_menu.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/util_generate_anchor_link.Rd                                                           |only
 dataquieR-2.0.0/dataquieR/man/util_generate_anchor_tag.Rd                                                            |only
 dataquieR-2.0.0/dataquieR/man/util_generate_calls.Rd                                                                 |only
 dataquieR-2.0.0/dataquieR/man/util_generate_calls_for_function.Rd                                                    |only
 dataquieR-2.0.0/dataquieR/man/util_generate_pages_from_report.Rd                                                     |only
 dataquieR-2.0.0/dataquieR/man/util_get_color_for_result.Rd                                                           |only
 dataquieR-2.0.0/dataquieR/man/util_get_concept_info.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/util_get_html_cell_for_result.Rd                                                       |only
 dataquieR-2.0.0/dataquieR/man/util_get_message_for_result.Rd                                                         |only
 dataquieR-2.0.0/dataquieR/man/util_get_redcap_rule_env.Rd                                                            |only
 dataquieR-2.0.0/dataquieR/man/util_get_var_att_names_of_level.Rd                                                     |    4 
 dataquieR-2.0.0/dataquieR/man/util_get_vars_in_segment.Rd                                                            |only
 dataquieR-2.0.0/dataquieR/man/util_gg_var_label.Rd                                                                   |only
 dataquieR-2.0.0/dataquieR/man/util_heatmap_1th.Rd                                                                    |    3 
 dataquieR-2.0.0/dataquieR/man/util_html_attr_quote_escape.Rd                                                         |only
 dataquieR-2.0.0/dataquieR/man/util_html_table.Rd                                                                     |only
 dataquieR-2.0.0/dataquieR/man/util_int_duplicate_content_dataframe.Rd                                                |only
 dataquieR-2.0.0/dataquieR/man/util_int_duplicate_content_segment.Rd                                                  |only
 dataquieR-2.0.0/dataquieR/man/util_int_duplicate_ids_dataframe.Rd                                                    |only
 dataquieR-2.0.0/dataquieR/man/util_int_duplicate_ids_segment.Rd                                                      |only
 dataquieR-2.0.0/dataquieR/man/util_int_unexp_records_set_dataframe.Rd                                                |only
 dataquieR-2.0.0/dataquieR/man/util_int_unexp_records_set_segment.Rd                                                  |only
 dataquieR-2.0.0/dataquieR/man/util_interpret_range.Rd                                                                |only
 dataquieR-2.0.0/dataquieR/man/util_is_na_0_empty_or_false.Rd                                                         |only
 dataquieR-2.0.0/dataquieR/man/util_is_numeric_in.Rd                                                                  |only
 dataquieR-2.0.0/dataquieR/man/util_load_manual.Rd                                                                    |only
 dataquieR-2.0.0/dataquieR/man/util_make_data_slot_from_table_slot.Rd                                                 |only
 dataquieR-2.0.0/dataquieR/man/util_make_function.Rd                                                                  |    5 
 dataquieR-2.0.0/dataquieR/man/util_map_by_largest_prefix.Rd                                                          |only
 dataquieR-2.0.0/dataquieR/man/util_map_labels.Rd                                                                     |   20 
 dataquieR-2.0.0/dataquieR/man/util_match_arg.Rd                                                                      |only
 dataquieR-2.0.0/dataquieR/man/util_merge_data_frame_list.Rd                                                          |only
 dataquieR-2.0.0/dataquieR/man/util_message.Rd                                                                        |only
 dataquieR-2.0.0/dataquieR/man/util_observation_expected.Rd                                                           |only
 dataquieR-2.0.0/dataquieR/man/util_optimize_histogram_bins.Rd                                                        |only
 dataquieR-2.0.0/dataquieR/man/util_order_by_order.Rd                                                                 |only
 dataquieR-2.0.0/dataquieR/man/util_parse_assignments.Rd                                                              |    8 
 dataquieR-2.0.0/dataquieR/man/util_parse_interval.Rd                                                                 |only
 dataquieR-2.0.0/dataquieR/man/util_parse_redcap_rule.Rd                                                              |only
 dataquieR-2.0.0/dataquieR/man/util_prep_location_check.Rd                                                            |only
 dataquieR-2.0.0/dataquieR/man/util_prep_proportion_check.Rd                                                          |only
 dataquieR-2.0.0/dataquieR/man/util_prepare_dataframes.Rd                                                             |   22 
 dataquieR-2.0.0/dataquieR/man/util_pretty_vector_string.Rd                                                           |only
 dataquieR-2.0.0/dataquieR/man/util_rbind.Rd                                                                          |only
 dataquieR-2.0.0/dataquieR/man/util_recode.Rd                                                                         |only
 dataquieR-2.0.0/dataquieR/man/util_remove_empty_rows.Rd                                                              |only
 dataquieR-2.0.0/dataquieR/man/util_remove_na_records.Rd                                                              |only
 dataquieR-2.0.0/dataquieR/man/util_replace_codes_by_NA.Rd                                                            |   15 
 dataquieR-2.0.0/dataquieR/man/util_replace_hard_limit_violations.Rd                                                  |only
 dataquieR-2.0.0/dataquieR/man/util_setup_rstudio_job.Rd                                                              |only
 dataquieR-2.0.0/dataquieR/man/util_sort_by_order.Rd                                                                  |only
 dataquieR-2.0.0/dataquieR/man/util_stop_if_not.Rd                                                                    |only
 dataquieR-2.0.0/dataquieR/man/util_study_var2factor.Rd                                                               |only
 dataquieR-2.0.0/dataquieR/man/util_sub_string_left_from_..Rd                                                         |only
 dataquieR-2.0.0/dataquieR/man/util_sub_string_right_from_..Rd                                                        |only
 dataquieR-2.0.0/dataquieR/man/util_table_of_vct.Rd                                                                   |only
 dataquieR-2.0.0/dataquieR/man/util_validate_missing_lists.Rd                                                         |only
 dataquieR-2.0.0/dataquieR/man/util_variable_references.Rd                                                            |only
 dataquieR-2.0.0/dataquieR/man/util_view_file.Rd                                                                      |only
 dataquieR-2.0.0/dataquieR/man/util_warning.Rd                                                                        |   18 
 dataquieR-2.0.0/dataquieR/tests/testthat.R                                                                           |    1 
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 dataquieR-2.0.0/dataquieR/tests/testthat/test-000_globs.R                                                            |   12 
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Package IsoplotR updated to version 5.2 with previous version 5.1 dated 2022-10-18

Title: Statistical Toolbox for Radiometric Geochronology
Description: Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using 'York', 'Titterington' and 'Ludwig' approaches. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb, Th-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isochrons as well as 230Th-U evolution plots.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>

Diff between IsoplotR versions 5.1 dated 2022-10-18 and 5.2 dated 2023-03-01

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Package duckdb updated to version 0.7.1-1 with previous version 0.7.0 dated 2023-02-14

Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management system with support for the Structured Query Language (SQL). This package includes all of DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Muehleisen [aut, cre] , Mark Raasveldt [aut] , Stichting DuckDB Foundation [cph], Apache Software Foundation [cph], PostgreSQL Global Development Group [cph], The Regents of the University of California [cph], Cameron Desrochers [cph], Victor Z [...truncated...]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>

Diff between duckdb versions 0.7.0 dated 2023-02-14 and 0.7.1-1 dated 2023-03-01

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Package coda.base updated to version 0.5.4.3 with previous version 0.5.2 dated 2022-07-18

Title: A Basic Set of Functions for Compositional Data Analysis
Description: A minimum set of functions to perform compositional data analysis using the log-ratio approach introduced by John Aitchison (1982). Main functions have been implemented in c++ for better performance.
Author: Marc Comas-Cufi [aut, cre]
Maintainer: Marc Comas-Cufi <mcomas@imae.udg.edu>

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Package cholera updated to version 0.8.0 with previous version 0.7.9 dated 2021-10-11

Title: Amend, Augment and Aid Analysis of John Snow's Cholera Map
Description: Amends errors, augments data and aids analysis of John Snow's map of the 1854 London cholera outbreak.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>

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Package blavaan updated to version 0.4-7 with previous version 0.4-6 dated 2023-02-11

Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory factor analysis, structural equation models, and latent growth curve models. References: Merkle & Rosseel (2018) <doi:10.18637/jss.v085.i04>; Merkle et al. (2021) <doi:10.18637/jss.v100.i06>.
Author: Edgar Merkle [aut, cre] , Yves Rosseel [aut], Ben Goodrich [aut], Mauricio Garnier-Villarreal [ctb] , Terrence D. Jorgensen [ctb] , Huub Hoofs [ctb] , Rens van de Schoot [ctb] , Andrew Johnson [ctb] , Matthew Emery [ctb]
Maintainer: Edgar Merkle <merklee@missouri.edu>

Diff between blavaan versions 0.4-6 dated 2023-02-11 and 0.4-7 dated 2023-03-01

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Package RaceID updated to version 0.2.9 with previous version 0.2.8 dated 2022-11-16

Title: Identification of Cell Types and Inference of Lineage Trees from Single-Cell RNA-Seq Data
Description: Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.
Author: Dominic Gruen <dominic.gruen@gmail.com>
Maintainer: Dominic Gruen <dominic.gruen@gmail.com>

Diff between RaceID versions 0.2.8 dated 2022-11-16 and 0.2.9 dated 2023-03-01

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New package treediff with initial version 0.1
Package: treediff
Title: Testing Differences Between Families of Trees
Version: 0.1
Date: 2023-02-24
Description: Perform test to detect differences in structure between families of trees. The method is based on cophenetic distances and aggregated Student's tests.
Depends: R (>= 4.0.0)
Imports: dplyr, limma, stats, reshape2, testthat, rlang
License: GPL (>= 3)
Encoding: UTF-8
Suggests: knitr, rmarkdown, adjclust
URL: https://forgemia.inra.fr/scales/treediff
BugReports: https://forgemia.inra.fr/scales/treediff/-/issues
NeedsCompilation: no
Packaged: 2023-03-01 08:34:49 UTC; nathalie
Author: Nathalie Vialaneix [aut, cre] , Gwendaelle Cardenac [aut], Marie Chavent [aut], Sylvain Foissac [aut], Pierre Neuvial [aut], Nathanael Randriamihamison [aut]
Maintainer: Nathalie Vialaneix <nathalie.vialaneix@inrae.fr>
Repository: CRAN
Date/Publication: 2023-03-01 10:50:02 UTC

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New package smdocker with initial version 0.1.1
Package: smdocker
Title: Build 'Docker Images' in 'Amazon SageMaker Studio' using 'Amazon Web Service CodeBuild'
Version: 0.1.1
Description: Allows users to easily build custom 'docker images' <https://docs.docker.com/> from 'Amazon Web Service Sagemaker' <https://aws.amazon.com/sagemaker/> using 'Amazon Web Service CodeBuild' <https://aws.amazon.com/codebuild/>.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: jsonlite, paws.compute, paws.developer.tools, paws.machine.learning, paws.management, paws.storage, paws.security.identity, zip, stats, utils
Suggests: covr, crayon, mockery, testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2023-03-01 09:28:56 UTC; dyfanjones
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Repository: CRAN
Date/Publication: 2023-03-01 10:50:05 UTC

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New package rvMF with initial version 0.0.3
Package: rvMF
Title: Fast Generation of von Mises-Fisher Distributed Pseudo-Random Vectors
Version: 0.0.3
Description: Generates pseudo-random vectors that follow an arbitrary von Mises-Fisher distribution on a sphere. This method is fast and efficient when generating a large number of pseudo-random vectors. Functions to generate random variates and compute density for the distribution of an inner product between von Mises-Fisher random vector and its mean direction are also provided.
URL: https://github.com/seungwoo-stat/rvMF
BugReports: https://github.com/seungwoo-stat/rvMF/issues
License: GPL (>= 3)
Encoding: UTF-8
LinkingTo: Rcpp
Imports: Bessel (>= 0.6-0), Rcpp (>= 1.0.10), Rfast (>= 2.0.6), scModels (>= 1.0.4)
NeedsCompilation: yes
Packaged: 2023-03-01 09:13:03 UTC; SeungwooKang
Author: Seungwoo Kang [aut, cre], Hee-Seok Oh [aut]
Maintainer: Seungwoo Kang <kangsw0401@snu.ac.kr>
Repository: CRAN
Date/Publication: 2023-03-01 10:50:08 UTC

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New package otsfeatures with initial version 1.0.0
Package: otsfeatures
Title: Ordinal Time Series Analysis
Version: 1.0.0
Description: An implementation of several functions for feature extraction in ordinal time series datasets. Specifically, some of the features proposed by Weiss (2019) <doi:10.1080/01621459.2019.1604370> can be computed. These features can be used to perform inferential tasks or to feed machine learning algorithms for ordinal time series, among others. The package also includes some interesting datasets containing financial time series. Practitioners from a broad variety of fields could benefit from the general framework provided by 'otsfeatures'.
License: GPL-2
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Depends: R (>= 4.0.0)
Imports: ggplot2, astsa, latex2exp, Rdpack, Bolstad2
NeedsCompilation: no
Packaged: 2023-02-28 19:04:18 UTC; angel
Author: Angel Lopez-Oriona [aut, cre], Jose A. Vilar [aut]
Maintainer: Angel Lopez-Oriona <oriona38@hotmail.com>
Repository: CRAN
Date/Publication: 2023-03-01 10:40:02 UTC

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New package ISO11784Tools with initial version 1.1.4
Package: ISO11784Tools
Title: ISO11784 PIT Tag ID Format Converters
Version: 1.1.4
Description: Some tools to assist with converting International Organization for Standardization (ISO) standard 11784 (ISO11784) animal ID codes between 4 recognised formats commonly displayed on Passive Integrated Transponder (PIT) tag readers. The most common formats are 15 digit decimal, e.g., 999123456789012, and 13 character hexadecimal 'dot' format, e.g., 3E7.1CBE991A14. These are referred to in this package as isodecimal and isodothex. The other two formats are the raw hexadecimal representation of the ISO11784 binary structure (see <https://en.wikipedia.org/wiki/ISO_11784_and_ISO_11785>). There are two 'flavours' of this format, a left and a right variation. Which flavour a reader happens to output depends on if the developers decided to reverse the binary number or not before converting to hexadecimal, a decision based on the fact that the PIT tags will transmit their binary code Least Significant Bit (LSB) first, or backwards basically.
License: GPL-3
Encoding: UTF-8
Language: en-GB
Imports: stringr, stringi, dplyr, tibble
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-02-28 18:46:01 UTC; graem
Author: Graeme Diack [aut, cre]
Maintainer: Graeme Diack <graemediack@hotmail.com>
Repository: CRAN
Date/Publication: 2023-03-01 10:40:05 UTC

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New package AalenJohansen with initial version 1.0
Package: AalenJohansen
Title: Conditional Aalen-Johansen Estimation
Version: 1.0
Maintainer: Martin Bladt <martinbladt@math.ku.dk>
Description: Provides the conditional Nelson-Aalen and Aalen-Johansen estimators. The methods are based on Bladt & Furrer (2023), in preparation.
License: GPL (>= 2)
Encoding: UTF-8
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-02-28 18:01:12 UTC; martinbladt
Author: Martin Bladt [aut, cre], Christian Furrer [aut]
Repository: CRAN
Date/Publication: 2023-03-01 10:42:09 UTC

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Package spData updated to version 2.2.2 with previous version 2.2.1 dated 2022-11-15

Title: Datasets for Spatial Analysis
Description: Diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis. It includes R data of class sf (defined by the package 'sf'), Spatial ('sp'), and nb ('spdep'). Unlike other spatial data packages such as 'rnaturalearth' and 'maps', it also contains data stored in a range of file formats including GeoJSON, ESRI Shapefile and GeoPackage. Some of the datasets are designed to illustrate specific analysis techniques. cycle_hire() and cycle_hire_osm(), for example, is designed to illustrate point pattern analysis techniques.
Author: Roger Bivand [aut] , Jakub Nowosad [aut, cre] , Robin Lovelace [aut] , Angelos Mimis [ctb], Mark Monmonier [ctb] , Greg Snow [ctb]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>

Diff between spData versions 2.2.1 dated 2022-11-15 and 2.2.2 dated 2023-03-01

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Package shinyGizmo updated to version 0.4.2 with previous version 0.4.1 dated 2023-02-24

Title: Custom Components for Shiny Applications
Description: Provides useful UI components and input widgets for 'Shiny' applications. The offered components allow to apply non-standard operations and view to your 'Shiny' application, but also help to overcome common performance issues.
Author: Krystian Igras [cre, aut], Adam Forys [ctb], Stephane Laurent [ctb], Craig Dennis [cph] , Daniel Eden [cph]
Maintainer: Krystian Igras <krystian8207@gmail.com>

Diff between shinyGizmo versions 0.4.1 dated 2023-02-24 and 0.4.2 dated 2023-03-01

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Package castor updated to version 1.7.8 with previous version 1.7.6 dated 2022-12-14

Title: Efficient Phylogenetics on Large Trees
Description: Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca@zoology.ubc.ca>

Diff between castor versions 1.7.6 dated 2022-12-14 and 1.7.8 dated 2023-03-01

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Package switchr (with last version 0.14.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-01-31 0.14.5
2020-04-20 0.14.3
2020-01-25 0.14.2

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Package GRANCore (with last version 0.2.7) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-02-04 0.2.7

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Package GRANBase (with last version 2.6.20) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-02-05 2.6.20

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Package switchrGist (with last version 0.2.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-02-02 0.2.5

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Package spatialreg updated to version 1.2-8 with previous version 1.2-6 dated 2022-10-07

Title: Spatial Regression Analysis
Description: A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep'. These model fitting functions include maximum likelihood methods for cross-sectional models proposed by 'Cliff' and 'Ord' (1973, ISBN:0850860369) and (1981, ISBN:0850860814), fitting methods initially described by 'Ord' (1975) <doi:10.1080/01621459.1975.10480272>. The models are further described by 'Anselin' (1988) <doi:10.1007/978-94-015-7799-1>. Spatial two stage least squares and spatial general method of moment models initially proposed by 'Kelejian' and 'Prucha' (1998) <doi:10.1023/A:1007707430416> and (1999) <doi:10.1111/1468-2354.00027> are provided. Impact methods and MCMC fitting methods proposed by 'LeSage' and 'Pace' (2009) <doi:10.1201/9781420064254> are implemented for the family of cross-sectional spatial regression models. Methods for fitting the log determinant term in maximu [...truncated...]
Author: Roger Bivand [cre, aut] , Gianfranco Piras [aut], Luc Anselin [ctb], Andrew Bernat [ctb], Eric Blankmeyer [ctb], Yongwan Chun [ctb], Virgilio Gomez-Rubio [ctb], Daniel Griffith [ctb], Martin Gubri [ctb], Rein Halbersma [ctb], James LeSage [ctb], Ange [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

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Package rflexscan updated to version 1.1.0 with previous version 1.0.0 dated 2021-10-21

Title: The Flexible Spatial Scan Statistic
Description: Functions for the detection of spatial clusters using the flexible spatial scan statistic developed by Tango and Takahashi (2005) <doi:10.1186/1476-072X-4-11>. This package implements a wrapper for the C routine used in the FleXScan 3.1.2 <https://sites.google.com/site/flexscansoftware/home> developed by Takahashi, Yokoyama, and Tango. For details, see Otani et al. (2021) <doi:10.18637/jss.v099.i13>.
Author: Takahiro Otani, Kunihiko Takahashi
Maintainer: Takahiro Otani <otani@med.nagoya-cu.ac.jp>

Diff between rflexscan versions 1.0.0 dated 2021-10-21 and 1.1.0 dated 2023-03-01

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Package nCov2019 updated to version 0.4.6 with previous version 0.4.5 dated 2021-06-10

Title: Exploring 'COVID'-19 Statistics
Description: Provides easy-to-use programming API to access real time and historical data of 'COVID'-19 cases, vaccine and therapeutics data, and a Shiny app to help users exploring the data. Fetching data using API provided by <https://disease.sh> .
Author: Guangchuang Yu [cre, aut, cph] , Tianzhi Wu [aut], Erqiang Hu [ctb], Patrick Tung [ctb], Xijin Ge [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>

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Package ldt updated to version 0.2.0.0 with previous version 0.1.4.0 dated 2023-01-26

Title: Let Data Talk
Description: Methods and tools for creating a model set and estimating and evaluating the explanation or prediction power of its members. 'SUR' modelling (for parameter estimation), 'logit'/'probit' modelling (for binary classification), and 'VARMA' modelling (for time-series forecasting) are implemented. Evaluations are both in-sample and out-of-sample. It can be used for stepwise regression analysis <https://en.wikipedia.org/wiki/Stepwise_regression>, automatic model selection and model averaging (Claeskens and Hjort (2008, ISBN:1139471805, 9781139471800)), calculating benchmarks, and doing sensitivity analysis (Leamer (1983) <https://www.jstor.org/stable/1803924> proposal).
Author: Ramin Mojab [aut, cre], Michael Hutt [cph] , Stephen Becker [cph] by Ciyou Zhu . L-BFGS-B Version 3.0 is an algorithmic update from 2011, with coding changes by J. L. Morales), Math.NET [cph]
Maintainer: Ramin Mojab <rmojab63@gmail.com>

Diff between ldt versions 0.1.4.0 dated 2023-01-26 and 0.2.0.0 dated 2023-03-01

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Package genekitr updated to version 1.1.3 with previous version 1.1.0 dated 2023-01-19

Title: Gene Analysis Toolkit
Description: An analysis toolkit focused on genes. It mainly includes five features (search, convert, analysis, plot, and export). The user just needs to input feature id ('entrez', 'symbol', 'ensembl' or 'uniprot') to retrieve feature information and 'PubMed'<https://pubmed.ncbi.nlm.nih.gov/> records, to convert id types, to easily handle gene enrichment analysis and publication-level figures, to plot group interaction and export results as sheets in one 'excel' file to easily share and communicate with others.
Author: Yunze Liu [aut, cre]
Maintainer: Yunze Liu <jieandze1314@gmail.com>

Diff between genekitr versions 1.1.0 dated 2023-01-19 and 1.1.3 dated 2023-03-01

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Package forceR updated to version 1.0.20 with previous version 1.0.18 dated 2023-02-27

Title: Force Measurement Analyses
Description: For cleaning and analysis of graphs, such as animal closing force measurements. 'forceR' was initially written and optimized to deal with insect bite force measurements, but can be used for any time series. Includes a full workflow to load, plot and crop data, correct amplifier and baseline drifts, identify individual peak shapes (bites), rescale (normalize) peak curves, and find best polynomial fits to describe and analyze force curve shapes.
Author: Peter T. Ruehr [aut, cre] , Alexander Blanke [ctb]
Maintainer: Peter T. Ruehr <peter.ruehr@gmail.com>

Diff between forceR versions 1.0.18 dated 2023-02-27 and 1.0.20 dated 2023-03-01

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Package fitzRoy updated to version 1.3.0 with previous version 1.2.0 dated 2022-09-28

Title: Easily Scrape and Process AFL Data
Description: An easy package for scraping and processing Australia Rules Football (AFL) data. 'fitzRoy' provides a range of functions for accessing publicly available data from 'AFL Tables' <https://afltables.com/afl/afl_index.html>, 'Footy Wire' <https://www.footywire.com> and 'The Squiggle' <https://squiggle.com.au>. Further functions allow for easy processing, cleaning and transformation of this data into formats that can be used for analysis.
Author: James Day [cre, aut], Robert Nguyen [aut], Matthew Erbs [ctb], Oscar Lane [aut], Jason Zivkovic [ctb], Jacob Holden [ctb]
Maintainer: James Day <jamesthomasday@gmail.com>

Diff between fitzRoy versions 1.2.0 dated 2022-09-28 and 1.3.0 dated 2023-03-01

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New package fdaPDE with initial version 1.1-16
Package: fdaPDE
Version: 1.1-16
Date: 2023-02-28
Title: Physics-Informed Spatial and Functional Data Analysis
Maintainer: Eleonora Arnone <eleonora.arnone@polimi.it>
Depends: R (>= 3.5.0), stats, grDevices, graphics, rgl, Matrix, plot3D, methods
LinkingTo: RcppEigen, Rcpp
Suggests: MASS, testthat
Description: An implementation of regression models with partial differential regularizations, making use of the Finite Element Method. The models efficiently handle data distributed over irregularly shaped domains and can comply with various conditions at the boundaries of the domain. A priori information about the spatial structure of the phenomenon under study can be incorporated in the model via the differential regularization. See Sangalli, L. M. (2021) <doi:10.1111/insr.12444> "Spatial Regression With Partial Differential Equation Regularisation" for an overview. The release 1.1-9 requires R (>= 4.2.0) to be installed on windows machines.
License: GPL-3
NeedsCompilation: yes
SystemRequirements: GNU make
Encoding: UTF-8
Packaged: 2023-02-28 17:47:25 UTC; aldo
Author: Eleonora Arnone [aut, cre], Aldo Clemente [aut], Laura M. Sangalli [aut], Eardi Lila [aut], Jim Ramsay [aut], Luca Formaggia [aut], Giovanni Ardenghi [ctb], Blerta Begu [ctb], Michele Cavazzutti [ctb], Alessandra Colli [ctb], Alberto Colombo [ctb], L [...truncated...]
Repository: CRAN
Date/Publication: 2023-03-01 08:22:39 UTC

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New package evdbayes with initial version 1.1-3
Package: evdbayes
Version: 1.1-3
Date: 2023-02-27
Title: Bayesian Analysis in Extreme Value Theory
Author: Alec Stephenson [aut, cre], Mathieu Ribatet [aut]
Maintainer: Alec Stephenson <alec_stephenson@hotmail.com>
Depends: R (>= 1.8.0)
Description: Provides functions for the Bayesian analysis of extreme value models, using Markov chain Monte Carlo methods. Allows the construction of both uninformative and informed prior distributions for common statistical models applied to extreme event data, including the generalized extreme value distribution.
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2023-03-01 08:05:51 UTC; ste6an
Repository: CRAN
Date/Publication: 2023-03-01 09:00:05 UTC

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Package DependencyReviewer updated to version 1.2.1 with previous version 1.2.0 dated 2023-02-21

Title: Tool Suite to Investigate Other Packages
Description: Helps investigating other packages during code review by looking at their dependencies.
Author: Maarten van Kessel [aut, cre]
Maintainer: Maarten van Kessel <m.l.vankessel@erasmusmc.nl>

Diff between DependencyReviewer versions 1.2.0 dated 2023-02-21 and 1.2.1 dated 2023-03-01

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New package condSURV with initial version 2.0.4
Package: condSURV
Title: Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data
Version: 2.0.4
Date: 2023-02-28
Author: Luis Meira-Machado and Marta Sestelo
Maintainer: Marta Sestelo <sestelo@uvigo.es>
Description: Method to implement some newly developed methods for the estimation of the conditional survival function. See Meira-Machado, Sestelo and Goncalves (2016) <doi:10.1002/bimj.201500038>.
Depends: R (>= 3.0.0)
License: GPL (>= 2)
LazyData: TRUE
Imports: KernSmooth, np, survival, doParallel, parallel, doRNG, foreach
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2023-02-28 17:16:32 UTC; sestelo
Repository: CRAN
Date/Publication: 2023-03-01 08:22:44 UTC

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Package starschemar (with last version 1.2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-09-25 1.2.0
2020-09-13 1.1.0
2020-08-07 1.0.0

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Package treeplyr (with last version 0.1.10) was removed from CRAN

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2020-09-17 0.1.10

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Package wcep (with last version 1.0.0) was removed from CRAN

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2020-11-13 1.0.0

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Package multicolor (with last version 0.1.6) was removed from CRAN

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2023-01-05 0.1.6
2021-11-04 0.1.5
2020-02-03 0.1.4
2019-04-13 0.1.3
2019-03-18 0.1.2
2018-09-25 0.1.1
2018-08-27 0.1.0

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Package PHEindicatormethods (with last version 1.4.2) was removed from CRAN

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2022-11-30 1.4.2
2022-08-08 1.4.1
2020-06-25 1.3.2
2020-04-14 1.3.1
2020-03-12 1.3.0
2020-01-13 1.2.0
2019-09-11 1.1.5
2019-05-15 1.1.3

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Package SwimmeR (with last version 0.13.0) was removed from CRAN

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2021-11-05 0.13.0
2021-08-14 0.12.0
2021-07-16 0.11.0
2021-06-02 0.10.0
2021-04-19 0.9.0
2021-03-20 0.8.0
2021-01-13 0.7.2
2020-11-22 0.6.0
2020-10-19 0.5.0
2020-09-17 0.4.2
2020-08-28 0.4.1
2020-07-11 0.3.1
2020-07-10 0.3.0
2020-04-10 0.2.0
2019-10-10 0.1.0.0

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Package helda (with last version 1.1.5) was removed from CRAN

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2021-01-06 1.1.5
2020-06-13 1.1.3
2020-06-07 1.1.2
2020-05-14 1.1.1
2020-05-01 1.1.0
2020-03-14 1.0.1
2020-02-29 1.0.0
2020-01-31 0.9.1

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Package metacore (with last version 0.1.1) was removed from CRAN

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2022-12-07 0.1.1
2022-10-04 0.1.0
2022-03-31 0.0.4
2022-02-14 0.0.3

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Package MBNMAtime (with last version 0.2.1) was removed from CRAN

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2021-09-13 0.2.1
2021-04-26 0.2.0
2020-03-04 0.1.3
2019-10-28 0.1.2

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Package LARGB (with last version 0.1.0) was removed from CRAN

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2021-09-28 0.1.0

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Package confoundr (with last version 1.2) was removed from CRAN

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2019-09-20 1.2
2019-09-13 1.1

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Package extdplyr (with last version 0.1.5) was removed from CRAN

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2020-04-20 0.1.5
2017-02-27 0.1.4
2017-02-23 0.1.3

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Package JumpeR (with last version 0.3.0) was removed from CRAN

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2021-11-16 0.3.0
2021-03-07 0.1.4

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Package NobBS (with last version 0.1.0) was removed from CRAN

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2020-03-03 0.1.0

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Package metatools (with last version 0.1.4) was removed from CRAN

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2023-02-13 0.1.4
2022-10-06 0.1.3
2022-04-20 0.1.1

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Package tfevents (with last version 0.0.1) was removed from CRAN

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2023-02-14 0.0.1

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Package DAISIE (with last version 4.3.1) was removed from CRAN

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2023-02-13 4.3.1
2022-06-02 4.2.0
2020-08-26 3.0.1
2020-08-14 3.0.0
2017-04-13 1.4
2016-11-14 1.2
2015-09-29 1.0.2
2015-06-03 1.0.1
2015-05-21 1.0

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Package MortalityLaws (with last version 1.9.9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-02-22 1.9.9

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