Title: Tidy Interface to 'data.table'
Description: A tidy interface to 'data.table',
giving users the speed of 'data.table' while using tidyverse-like syntax.
Author: Mark Fairbanks [aut, cre],
Abdessabour Moutik [ctb],
Matt Carlson [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb],
Robert On [ctb],
Alexander Sevostianov [ctb],
Koen ter Berg [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.9.2 dated 2023-01-13 and 0.10.0 dated 2023-03-09
tidytable-0.10.0/tidytable/DESCRIPTION | 10 tidytable-0.10.0/tidytable/MD5 | 280 +++++----- tidytable-0.10.0/tidytable/NAMESPACE | 113 ---- tidytable-0.10.0/tidytable/NEWS.md | 26 tidytable-0.10.0/tidytable/R/add_count.R | 43 - tidytable-0.10.0/tidytable/R/arrange.R | 18 tidytable-0.10.0/tidytable/R/as_tidytable.R | 5 tidytable-0.10.0/tidytable/R/between.R | 5 tidytable-0.10.0/tidytable/R/bind.R | 10 tidytable-0.10.0/tidytable/R/case.R | 5 tidytable-0.10.0/tidytable/R/case_match.R | 5 tidytable-0.10.0/tidytable/R/case_when.R | 7 tidytable-0.10.0/tidytable/R/coalesce.R | 5 tidytable-0.10.0/tidytable/R/complete.R | 31 - tidytable-0.10.0/tidytable/R/consecutive_id.R | 5 tidytable-0.10.0/tidytable/R/count.R | 47 - tidytable-0.10.0/tidytable/R/crossing.R | 6 tidytable-0.10.0/tidytable/R/distinct.R | 20 tidytable-0.10.0/tidytable/R/drop_na.R | 18 tidytable-0.10.0/tidytable/R/dt.R | 146 ++--- tidytable-0.10.0/tidytable/R/enframe.R | 5 tidytable-0.10.0/tidytable/R/expand.R | 31 - tidytable-0.10.0/tidytable/R/expand_grid.R | 52 - tidytable-0.10.0/tidytable/R/extract.R | 28 - tidytable-0.10.0/tidytable/R/fill.R | 22 tidytable-0.10.0/tidytable/R/filter.R | 30 - tidytable-0.10.0/tidytable/R/first-last-nth.R | 19 tidytable-0.10.0/tidytable/R/fread-fwrite.R | 6 tidytable-0.10.0/tidytable/R/get_dummies.R | 38 - tidytable-0.10.0/tidytable/R/group_by.R | 69 +- tidytable-0.10.0/tidytable/R/group_split.R | 29 - tidytable-0.10.0/tidytable/R/if_else.R | 6 tidytable-0.10.0/tidytable/R/join.R | 36 - tidytable-0.10.0/tidytable/R/lag-lead.R | 10 tidytable-0.10.0/tidytable/R/mutate.R | 103 +-- tidytable-0.10.0/tidytable/R/mutate_rowwise.R | 81 +- tidytable-0.10.0/tidytable/R/n_distinct.R | 5 tidytable-0.10.0/tidytable/R/na_if.R | 5 tidytable-0.10.0/tidytable/R/nest.R | 94 +-- tidytable-0.10.0/tidytable/R/nest_by.R | 34 - tidytable-0.10.0/tidytable/R/pivot_longer.R | 88 --- tidytable-0.10.0/tidytable/R/pivot_wider.R | 64 -- tidytable-0.10.0/tidytable/R/print.R | 8 tidytable-0.10.0/tidytable/R/pull.R | 26 tidytable-0.10.0/tidytable/R/purrr-map.R | 45 + tidytable-0.10.0/tidytable/R/purrr-map2.R | 40 + tidytable-0.10.0/tidytable/R/purrr-pmap.R | 40 + tidytable-0.10.0/tidytable/R/relocate.R | 18 tidytable-0.10.0/tidytable/R/rename.R | 44 - tidytable-0.10.0/tidytable/R/rename_with.R | 26 tidytable-0.10.0/tidytable/R/replace_na.R | 73 -- tidytable-0.10.0/tidytable/R/rowwise.R | 28 - tidytable-0.10.0/tidytable/R/select.R | 27 tidytable-0.10.0/tidytable/R/separate.R | 49 - tidytable-0.10.0/tidytable/R/separate_rows.R | 21 tidytable-0.10.0/tidytable/R/separate_wider_regex.R | 13 tidytable-0.10.0/tidytable/R/slice-head-tail.R | 72 +- tidytable-0.10.0/tidytable/R/slice-min-max.R | 99 +-- tidytable-0.10.0/tidytable/R/slice.R | 34 - tidytable-0.10.0/tidytable/R/slice_sample.R | 52 - tidytable-0.10.0/tidytable/R/standalone-zeallot.R |only tidytable-0.10.0/tidytable/R/summarize.R | 86 +-- tidytable-0.10.0/tidytable/R/tidytable.R | 11 tidytable-0.10.0/tidytable/R/top_n.R | 20 tidytable-0.10.0/tidytable/R/transmute.R | 10 tidytable-0.10.0/tidytable/R/tribble.R |only tidytable-0.10.0/tidytable/R/uncount.R | 26 tidytable-0.10.0/tidytable/R/unite.R | 18 tidytable-0.10.0/tidytable/R/unnest.R | 57 -- tidytable-0.10.0/tidytable/R/unnest_longer.R | 41 - tidytable-0.10.0/tidytable/R/unnest_wider.R | 30 - tidytable-0.10.0/tidytable/R/utils-across.R | 2 tidytable-0.10.0/tidytable/R/utils-fast_copy.R | 45 - tidytable-0.10.0/tidytable/R/utils-general.R | 74 ++ tidytable-0.10.0/tidytable/R/utils-prep_exprs.R | 4 tidytable-0.10.0/tidytable/R/zzz.R | 5 tidytable-0.10.0/tidytable/README.md | 25 tidytable-0.10.0/tidytable/man/dt.Rd | 2 tidytable-0.10.0/tidytable/man/nest..Rd | 21 tidytable-0.10.0/tidytable/man/nest.Rd | 21 tidytable-0.10.0/tidytable/man/slice.Rd | 24 tidytable-0.10.0/tidytable/man/slice_head..Rd | 6 tidytable-0.10.0/tidytable/man/slice_max..Rd | 4 tidytable-0.10.0/tidytable/man/slice_min..Rd | 4 tidytable-0.10.0/tidytable/man/slice_sample..Rd | 12 tidytable-0.10.0/tidytable/man/slice_tail..Rd | 6 tidytable-0.10.0/tidytable/man/tribble.Rd |only tidytable-0.10.0/tidytable/tests/testthat/test-add_count.R | 7 tidytable-0.10.0/tidytable/tests/testthat/test-arrange.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-between.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-bind.R | 6 tidytable-0.10.0/tidytable/tests/testthat/test-case.R | 11 tidytable-0.10.0/tidytable/tests/testthat/test-case_when.R | 31 - tidytable-0.10.0/tidytable/tests/testthat/test-coalesce.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-complete.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-consecutive_id.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-count.R | 6 tidytable-0.10.0/tidytable/tests/testthat/test-distinct.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-drop_na.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-dt.R | 23 tidytable-0.10.0/tidytable/tests/testthat/test-enframe.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-expand.R | 80 -- tidytable-0.10.0/tidytable/tests/testthat/test-expand_grid.R |only tidytable-0.10.0/tidytable/tests/testthat/test-extract.R | 4 tidytable-0.10.0/tidytable/tests/testthat/test-fill.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-filter.R | 12 tidytable-0.10.0/tidytable/tests/testthat/test-first-last-nth.R | 6 tidytable-0.10.0/tidytable/tests/testthat/test-get_dummies.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-group_by.R | 8 tidytable-0.10.0/tidytable/tests/testthat/test-group_split.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-if_else.R | 24 tidytable-0.10.0/tidytable/tests/testthat/test-join.R | 8 tidytable-0.10.0/tidytable/tests/testthat/test-lag-lead.R | 4 tidytable-0.10.0/tidytable/tests/testthat/test-mutate.R | 29 - tidytable-0.10.0/tidytable/tests/testthat/test-mutate_rowwise.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-n_distinct.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-na_if.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-nest.R | 80 +- tidytable-0.10.0/tidytable/tests/testthat/test-nest_by.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-pivot_longer.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-pivot_wider.R | 7 tidytable-0.10.0/tidytable/tests/testthat/test-pull.R | 49 - tidytable-0.10.0/tidytable/tests/testthat/test-purrr.R | 48 - tidytable-0.10.0/tidytable/tests/testthat/test-relocate.R | 4 tidytable-0.10.0/tidytable/tests/testthat/test-rename.R | 8 tidytable-0.10.0/tidytable/tests/testthat/test-replace_na.R | 23 tidytable-0.10.0/tidytable/tests/testthat/test-rowwise.R | 5 tidytable-0.10.0/tidytable/tests/testthat/test-select.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-separate.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-separate_rows.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-slice-head-tail.R | 22 tidytable-0.10.0/tidytable/tests/testthat/test-slice-min-max.R | 25 tidytable-0.10.0/tidytable/tests/testthat/test-slice.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-slice_sample.R | 8 tidytable-0.10.0/tidytable/tests/testthat/test-summarize.R | 133 +--- tidytable-0.10.0/tidytable/tests/testthat/test-tidytable.R | 13 tidytable-0.10.0/tidytable/tests/testthat/test-transmute.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-tribble.R |only tidytable-0.10.0/tidytable/tests/testthat/test-uncount.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-unite.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-unnest.R | 3 tidytable-0.10.0/tidytable/tests/testthat/test-unnest_longer.R | 2 tidytable-0.10.0/tidytable/tests/testthat/test-unnest_wider.R | 2 tidytable-0.9.2/tidytable/R/compat-zeallot.R |only 144 files changed, 1630 insertions(+), 2048 deletions(-)
Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially
distributed animal population sampled with an array of passive detectors,
such as traps, or by searching polygons or transects. Models incorporating
distance-dependent detection are fitted by maximizing the likelihood.
Tools are included for data manipulation and model selection.
Author: Murray Efford [aut, cre]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secr versions 4.5.8 dated 2022-11-29 and 4.5.10 dated 2023-03-09
secr-4.5.10/secr/DESCRIPTION | 8 secr-4.5.10/secr/MD5 | 55 - secr-4.5.10/secr/NAMESPACE | 4 secr-4.5.10/secr/NEWS | 24 secr-4.5.10/secr/R/distancetotrap.R |only secr-4.5.10/secr/R/make.capthist.R | 2 secr-4.5.10/secr/R/methods.R | 11 secr-4.5.10/secr/R/regionN.R | 7 secr-4.5.10/secr/R/secr.design.MS.R | 16 secr-4.5.10/secr/R/secr.fit.R | 6 secr-4.5.10/secr/R/setNumThreads.R |only secr-4.5.10/secr/R/sim.capthist.R | 5 secr-4.5.10/secr/R/sim.popn.R | 9 secr-4.5.10/secr/R/trap.builder.R | 1 secr-4.5.10/secr/R/utility.R | 605 +++++++++--------- secr-4.5.10/secr/inst/CITATION | 13 secr-4.5.10/secr/inst/doc/secr-datainput.pdf |binary secr-4.5.10/secr/inst/doc/secr-overview.pdf |binary secr-4.5.10/secr/man/homerange.Rd | 7 secr-4.5.10/secr/man/rbind.capthist.Rd | 15 secr-4.5.10/secr/man/secr-defunct.Rd | 14 secr-4.5.10/secr/man/secr-deprecated.Rd | 12 secr-4.5.10/secr/man/secr-package.Rd | 4 secr-4.5.10/secr/man/sim.popn.Rd | 18 secr-4.5.10/secr/src/Makevars | 1 secr-4.5.10/secr/src/Makevars.win | 1 secr-4.5.10/secr/src/autils.cpp | 1 secr-4.5.10/secr/src/prwisimple.cpp | 6 secr-4.5.10/secr/tests/testthat/test-countdetectors.R | 10 secr-4.5.8/secr/man/ip.secr-deprecated.Rd |only 30 files changed, 486 insertions(+), 369 deletions(-)
Title: R Interface to 'Bloomberg Data License'
Description: R interface to access prices and market data with the
'Bloomberg Data License' service from
<https://www.bloomberg.com/professional/product/data-license/>.
As a prerequisite, a valid Data License from 'Bloomberg' is needed
together with the corresponding SFTP credentials and whitelisting
of the IP from which accessing the service.
This software and its author are in no way affiliated,
endorsed, or approved by 'Bloomberg' or any of its affiliates.
'Bloomberg' is a registered trademark.
Author: Emanuele Guidotti [aut, cre]
Maintainer: Emanuele Guidotti <emanuele.guidotti@unine.ch>
Diff between RblDataLicense versions 0.2.4 dated 2021-07-29 and 0.2.5 dated 2023-03-09
DESCRIPTION | 12 MD5 | 40 - NAMESPACE | 27 - NEWS.md | 52 +- R/RblQuery.R | 290 ++++++------ R/core.R | 979 +++++++++++++++++++++---------------------- README.md | 167 +++---- build/vignette.rds |binary inst/CITATION | 20 inst/doc/RblDataLicense.Rmd | 180 +++---- inst/doc/RblDataLicense.html | 901 ++++++++++++++++++++------------------- man/RblConnect.Rd | 88 +-- man/RblDownload.Rd | 98 ++-- man/RblFiles.Rd | 42 - man/RblParse.Rd | 106 ++-- man/RblQuery.Rd | 182 +++---- man/RblRequestBuilder.Rd | 84 +-- man/RblUpload.Rd | 104 ++-- man/RblUrl.Rd | 42 - man/RblUser.Rd | 42 - vignettes/RblDataLicense.Rmd | 180 +++---- 21 files changed, 1840 insertions(+), 1796 deletions(-)
More information about RblDataLicense at CRAN
Permanent link
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers.
Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic
signatures can either be created and verified manually or via x509 certificates.
AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric
(public key) encryption or EC for Diffie Hellman. High-level envelope functions
combine RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random
number generator, and 'bignum' math methods for manually performing crypto
calculations on large multibyte integers.
Author: Jeroen Ooms [aut, cre] ,
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between openssl versions 2.0.5 dated 2022-12-05 and 2.0.6 dated 2023-03-09
DESCRIPTION | 8 +++--- LICENSE | 2 - MD5 | 40 +++++++++++++++++-------------- NAMESPACE | 5 +++ NEWS | 4 +++ R/pkcs7.R |only R/rsa.R | 2 - R/write.R | 6 +++- configure | 2 - inst/doc/bignum.html | 32 ++++++++++++------------- inst/doc/crypto_hashing.html | 4 +-- inst/doc/keys.html | 48 +++++++++++++++++++------------------- inst/doc/secure_rng.html | 18 +++++++------- man/pkcs7.Rd |only man/rsa_encrypt.Rd | 2 - src/Makevars.win | 1 src/hash.c | 8 ++---- src/pkcs7.c | 54 ++++++++++++++++++++++++++++++++++++++++++- src/write.c | 15 +++++++++++ tests/keys/encrypted.rsa.p7b |only tests/keys/id_rsa.crt |only tests/testthat/test_google.R | 2 - tests/testthat/test_pkcs.R | 12 ++++++++- 23 files changed, 177 insertions(+), 88 deletions(-)
Title: Export 'grid' Graphics as SVG
Description: Functions to export graphics drawn with package grid to SVG
format. Additional functions provide access to SVG features that
are not available in standard R graphics, such as hyperlinks,
animation, filters, masks, clipping paths, and gradient and pattern fills.
Author: Paul Murrell [cre, aut],
Simon Potter [aut]
Maintainer: Paul Murrell <paul@stat.auckland.ac.nz>
Diff between gridSVG versions 1.7-4 dated 2022-03-01 and 1.7-5 dated 2023-03-09
DESCRIPTION | 6 ++-- MD5 | 67 ++++++++++++++++++++++++--------------------- NAMESPACE | 2 + R/animate.R | 24 ++++++++-------- R/clipmask.R | 20 ++++++------- R/sanitisers.R | 9 ++++++ R/svg.R | 6 +++- build |only inst/NEWS.Rd | 8 +++++ inst/doc/animation.R |only inst/doc/animation.Rnw |only inst/doc/animation.pdf |binary inst/doc/extensibility.R |only inst/doc/extensibility.Rnw |only inst/doc/extensibility.pdf |binary inst/doc/gridSVG.R |only inst/doc/gridSVG.Rnw |only inst/doc/gridSVG.pdf |binary man/feBlend.Rd | 2 - man/feColorMatrix.Rd | 2 - man/feComponentTransfer.Rd | 4 +- man/feComposite.Rd | 2 - man/feConvolveMatrix.Rd | 2 - man/feDiffuseLighting.Rd | 2 - man/feDisplacementMap.Rd | 2 - man/feDistantLight.Rd | 2 - man/feFlood.Rd | 2 - man/feGaussianBlur.Rd | 2 - man/feImage.Rd | 4 +- man/feMerge.Rd | 2 - man/feMorphology.Rd | 2 - man/feOffset.Rd | 2 - man/feSpecularLighting.Rd | 2 - man/feSpotLight.Rd | 2 - man/feTile.Rd | 2 - man/feTurbulence.Rd | 2 - man/filterEffect.Rd | 2 - man/filterInputs.Rd | 2 - 38 files changed, 108 insertions(+), 78 deletions(-)
Title: Plotting Field Plans for Agricultural Experiments
Description: A function for plotting maps of agricultural field experiments that are laid out in grids. See Ryder (1981) <doi:10.1017/S0014479700011601>.
Author: Kevin Wright [aut, cre]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between desplot versions 1.9 dated 2021-10-29 and 1.10 dated 2023-03-09
DESCRIPTION | 14 - MD5 | 22 +- NAMESPACE | 1 NEWS.md | 10 - R/desplot.R | 124 +++++++++---- R/ggdesplot.R | 60 +++--- build/vignette.rds |binary inst/doc/desplot_examples.html | 366 ++++++++++++++++++++++++++++++++--------- man/desplot.Rd | 4 man/geom_tileborder.Rd | 20 +- man/panel.outlinelevelplot.Rd | 2 tests/testthat/test_desplot.R | 30 ++- 12 files changed, 475 insertions(+), 178 deletions(-)
Title: Advanced Graphics and Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment. The latest
version of the package includes a native graphics device for creating
in-memory graphics or drawing onto images using pixel coordinates.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between magick versions 2.7.3 dated 2021-08-18 and 2.7.4 dated 2023-03-09
DESCRIPTION | 8 MD5 | 32 NAMESPACE | 1 NEWS | 4 R/RcppExports.R | 4 R/base.R | 8 R/coder.R | 12 build/vignette.rds |binary cleanup | 1 configure | 2 inst/doc/intro.html | 1778 +++++++++++++++++++++++++++++++++++++++++++++------- man/config.Rd | 8 src/Makevars.in | 1 src/Makevars.win | 4 src/RcppExports.cpp | 16 src/options.cpp | 5 tools/winlibs.R | 2 17 files changed, 1644 insertions(+), 242 deletions(-)
Title: High Dimensional Numerical and Symbolic Calculus
Description: Efficient C++ optimized functions for numerical and symbolic calculus as described in Guidotti (2022) <doi:10.18637/jss.v104.i05>. It includes basic arithmetic, tensor calculus, Einstein summing convention, fast computation of the Levi-Civita symbol and generalized Kronecker delta, Taylor series expansion, multivariate Hermite polynomials, high-order derivatives, ordinary differential equations, differential operators (Gradient, Jacobian, Hessian, Divergence, Curl, Laplacian) and numerical integration in arbitrary orthogonal coordinate systems: cartesian, polar, spherical, cylindrical, parabolic or user defined by custom scale factors.
Author: Emanuele Guidotti [aut, cre]
Maintainer: Emanuele Guidotti <emanuele.guidotti@unine.ch>
Diff between calculus versions 1.0.0 dated 2022-09-26 and 1.0.1 dated 2023-03-09
DESCRIPTION | 8 +- MD5 | 50 ++++++------- NEWS.md | 4 + README.md | 4 - inst/doc/derivatives.Rmd | 2 inst/doc/derivatives.html | 113 ++++++++++++++---------------- inst/doc/differential-operators.Rmd | 18 ++-- inst/doc/differential-operators.html | 131 +++++++++++++++++------------------ inst/doc/einstein.Rmd | 4 - inst/doc/einstein.html | 115 +++++++++++++++--------------- inst/doc/hermite.Rmd | 2 inst/doc/hermite.html | 113 ++++++++++++++---------------- inst/doc/integrals.Rmd | 2 inst/doc/integrals.html | 115 +++++++++++++++--------------- inst/doc/ode.Rmd | 4 - inst/doc/ode.html | 115 +++++++++++++++--------------- inst/doc/taylor.Rmd | 6 - inst/doc/taylor.html | 117 +++++++++++++++---------------- man/calculus-package.Rd | 2 vignettes/derivatives.Rmd | 2 vignettes/differential-operators.Rmd | 18 ++-- vignettes/einstein.Rmd | 4 - vignettes/hermite.Rmd | 2 vignettes/integrals.Rmd | 2 vignettes/ode.Rmd | 4 - vignettes/taylor.Rmd | 6 - 26 files changed, 480 insertions(+), 483 deletions(-)
Title: Tools for Developing R Packages Interfacing with 'Stan'
Description: Provides various tools for developers of R packages interfacing
with 'Stan' <https://mc-stan.org>, including functions to set up the required
package structure, S3 generics and default methods to unify function naming
across 'Stan'-based R packages, and vignettes with recommendations for
developers.
Author: Jonah Gabry [aut, cre],
Ben Goodrich [aut],
Martin Lysy [aut],
Andrew Johnson [aut],
Hamada S. Badr [ctb],
Marco Colombo [ctb],
Stefan Siegert [ctb],
Trustees of Columbia University [cph]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between rstantools versions 2.2.0 dated 2022-04-08 and 2.3.0 dated 2023-03-09
DESCRIPTION | 20 - MD5 | 27 - NAMESPACE | 1 NEWS.md | 6 R/rstan_config.R | 89 ++--- R/rstan_create_package.R | 1 R/rstantools-package.R | 3 build/vignette.rds |binary inst/doc/developer-guidelines.html | 415 +++++++++++++++++++++-- inst/doc/minimal-rstan-package.html | 627 ++++++++++++++++++++++++++---------- inst/include/sys/Makevars | 4 inst/include/sys/Makevars.win | 4 man/figures/logo.svg |only man/rstan_create_package.Rd | 5 man/rstantools-package.Rd | 5 15 files changed, 922 insertions(+), 285 deletions(-)
Title: Tools to Manipulate and Query Semantic Data
Description: The Resource Description Framework, or 'RDF' is a widely used
data representation model that forms the cornerstone of the
Semantic Web. 'RDF' represents data as a graph rather than
the familiar data table or rectangle of relational databases.
The 'rdflib' package provides a friendly and concise user interface
for performing common tasks on 'RDF' data, such as reading, writing
and converting between the various serializations of 'RDF' data,
including 'rdfxml', 'turtle', 'nquads', 'ntriples', and 'json-ld';
creating new 'RDF' graphs, and performing graph queries using 'SPARQL'.
This package wraps the low level 'redland' R package which
provides direct bindings to the 'redland' C library. Additionally,
the package supports the newer and more developer friendly
'JSON-LD' format through the 'jsonld' package. The package
interface takes inspiration from the Python 'rdflib' library.
Author: Carl Boettiger [aut, cre, cph]
,
Bryce Mecum [rev] ,
Anna Krystalli [rev] ,
Viktor Senderov [ctb]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between rdflib versions 0.2.5 dated 2022-02-09 and 0.2.6 dated 2023-03-09
DESCRIPTION | 8 MD5 | 16 NEWS.md | 4 R/rdf_query.R | 5 README.md | 25 build/vignette.rds |binary inst/CITATION | 4 inst/WORDLIST | 87 - inst/doc/rdf_intro.html | 3430 +++++++++++++++++++++++++++++++++++++++++++++--- 9 files changed, 3359 insertions(+), 220 deletions(-)
Title: Sampling and Estimation Methods
Description: Functions to take samples of data, sample size estimation and getting useful estimators such as total, mean, proportion about its population using simple random sampling.
Author: Javier Estevez [aut, cre, cph]
Maintainer: Javier Estevez <javier.estase@gmail.com>
Diff between samplingR versions 0.1.0 dated 2023-02-24 and 0.1.1 dated 2023-03-09
DESCRIPTION | 8 +- MD5 | 12 ++-- NAMESPACE | 2 R/samplesize.R |only R/srsdomainestimator.R |only R/srsestimator.R | 123 +++++++++++++++++++++++++++++++++++----------- man/samplesize.Rd |only man/srsdomainestimator.Rd |only man/srsestimator.Rd | 25 ++++++--- 9 files changed, 127 insertions(+), 43 deletions(-)
Title: Boosting Methods for 'GAMLSS'
Description: Boosting models for fitting generalized additive models for
location, shape and scale ('GAMLSS') to potentially high dimensional
data.
Author: Benjamin Hofner [aut, cre] ,
Andreas Mayr [aut],
Nora Fenske [aut],
Janek Thomas [aut],
Matthias Schmid [aut]
Maintainer: Benjamin Hofner <benjamin.hofner@pei.de>
Diff between gamboostLSS versions 2.0-6 dated 2022-05-11 and 2.0-7 dated 2023-03-09
ChangeLog | 9 ++++++- DESCRIPTION | 8 +++--- MD5 | 20 ++++++++-------- R/helpers.R | 4 +-- build/partial.rdb |binary build/vignette.rds |binary data/india.RData |binary data/india.bnd.RData |binary inst/CITATION | 46 +++++++++++++++++++------------------- inst/NEWS.Rd | 11 ++++++++- inst/doc/gamboostLSS_Tutorial.pdf |binary 11 files changed, 57 insertions(+), 41 deletions(-)
Title: Robust Data Analysis Through Monitoring and Dynamic
Visualization
Description: Provides interface to the 'MATLAB' toolbox 'Flexible Statistical Data Analysis
(FSDA)' which is comprehensive and computationally efficient
software package for robust statistics in regression, multivariate
and categorical data analysis. The current R version implements tools
for regression: (forward search, S- and MM-estimation, least trimmed
squares (LTS) and least median of squares (LMS)), for multivariate analysis
(forward search, S- and MM-estimation), for cluster analysis and cluster-wise regression.
The distinctive feature of our package is the possibility of
monitoring the statistics of interest as a function of breakdown point,
efficiency or subset size, depending on the estimator. This is
accompanied by a rich set of graphical features, such as dynamic
brushing, linking, particularly useful for exploratory data analysis.
Author: Valentin Todorov [aut, cre] ,
Emmanuele Sordini [aut],
Aldo Corbellini [ctb],
Francesca Torti [ctb],
Marco Riani [ctb],
Domenico Perrotta [ctb],
Andrea Cerioli [ctb]
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between fsdaR versions 0.8-0 dated 2022-08-11 and 0.8-1 dated 2023-03-09
fsdaR-0.8-0/fsdaR/inst/work/Ld.R |only fsdaR-0.8-0/fsdaR/inst/work/examples.R |only fsdaR-0.8-0/fsdaR/inst/work/issues.txt |only fsdaR-0.8-1/fsdaR/ChangeLog | 20 +++- fsdaR-0.8-1/fsdaR/DESCRIPTION | 12 +- fsdaR-0.8-1/fsdaR/MD5 | 86 +++++++++-------- fsdaR-0.8-1/fsdaR/NAMESPACE | 2 fsdaR-0.8-1/fsdaR/R/carbikeplot.R | 4 fsdaR-0.8-1/fsdaR/R/corfwdplot.R | 2 fsdaR-0.8-1/fsdaR/R/covplot.R | 2 fsdaR-0.8-1/fsdaR/R/datadoc.R | 2 fsdaR-0.8-1/fsdaR/R/fanplot.R | 2 fsdaR-0.8-1/fsdaR/R/fsmfan.R | 2 fsdaR-0.8-1/fsdaR/R/fsmmmdrs.R | 2 fsdaR-0.8-1/fsdaR/R/fsmtra.R | 2 fsdaR-0.8-1/fsdaR/R/fsmult.R | 2 fsdaR-0.8-1/fsdaR/R/fsrfan.R | 4 fsdaR-0.8-1/fsdaR/R/internal.R | 150 +++++++++++++++++------------- fsdaR-0.8-1/fsdaR/R/ltsts.R | 2 fsdaR-0.8-1/fsdaR/R/malfwdplot.R | 2 fsdaR-0.8-1/fsdaR/R/malindexplot.R | 2 fsdaR-0.8-1/fsdaR/R/mmdplot.R | 2 fsdaR-0.8-1/fsdaR/R/mmdrsplot.R | 2 fsdaR-0.8-1/fsdaR/R/mmmult.R | 2 fsdaR-0.8-1/fsdaR/R/myrng.R |only fsdaR-0.8-1/fsdaR/R/psifun.R |only fsdaR-0.8-1/fsdaR/R/regspmplot.R | 2 fsdaR-0.8-1/fsdaR/R/s3objectsdoc.R | 3 fsdaR-0.8-1/fsdaR/R/score.R | 2 fsdaR-0.8-1/fsdaR/R/simulate_ts.R | 2 fsdaR-0.8-1/fsdaR/R/smult.R | 2 fsdaR-0.8-1/fsdaR/R/spmplot.R | 2 fsdaR-0.8-1/fsdaR/R/tclust.R | 62 +++++++++--- fsdaR-0.8-1/fsdaR/R/tclustIC.R | 2 fsdaR-0.8-1/fsdaR/R/tclustICplot.R | 2 fsdaR-0.8-1/fsdaR/R/tclustICsol.R | 2 fsdaR-0.8-1/fsdaR/R/tclustreg.R | 2 fsdaR-0.8-1/fsdaR/R/tclustregIC.R | 2 fsdaR-0.8-1/fsdaR/R/zzz.R | 2 fsdaR-0.8-1/fsdaR/inst/NEWS.Rd | 19 +++ fsdaR-0.8-1/fsdaR/inst/doc/fsdaR.pdf |binary fsdaR-0.8-1/fsdaR/inst/java/fsda4java.jar |binary fsdaR-0.8-1/fsdaR/inst/java/r_fsda.jar |binary fsdaR-0.8-1/fsdaR/inst/work/LD.R |only fsdaR-0.8-1/fsdaR/inst/work/err-13.R |only fsdaR-0.8-1/fsdaR/inst/work/examples.r |only fsdaR-0.8-1/fsdaR/inst/work/test-psifun.R |only fsdaR-0.8-1/fsdaR/man/fsrbase.Rd |only fsdaR-0.8-1/fsdaR/man/myrng.Rd |only fsdaR-0.8-1/fsdaR/man/psifun.Rd |only 50 files changed, 255 insertions(+), 157 deletions(-)
Title: A Simulation Framework for Spatiotemporal Population Genetics
Description: A framework for simulating spatially explicit genomic data which
leverages real cartographic information for programmatic and visual encoding
of spatiotemporal population dynamics on real geographic landscapes. Population
genetic models are then automatically executed by the 'SLiM' software by Haller
et al. (2019) <doi:10.1093/molbev/msy228> behind the scenes, using a custom
built-in simulation 'SLiM' script. Additionally, fully abstract spatial models
not tied to a specific geographic location are supported, and users can also
simulate data from standard, non-spatial, random-mating models. These can be
simulated either with the 'SLiM' built-in back-end script, or using an efficient
coalescent population genetics simulator 'msprime' by Baumdicker et al. (2022)
<doi:10.1093/genetics/iyab229> with a custom-built 'Python' script bundled with the
R package. Simulated genomic data is saved in a tree-sequence format and can be
loaded, manipulated, and summarised using tree-sequen [...truncated...]
Author: Martin Petr [aut, cre]
Maintainer: Martin Petr <contact@bodkan.net>
Diff between slendr versions 0.5.0 dated 2023-02-02 and 0.5.1 dated 2023-03-09
DESCRIPTION | 6 - MD5 | 60 +++++----- NAMESPACE | 1 NEWS.md | 6 + R/tree-sequences.R | 179 ++++++++++++++++++++++++++++-- README.md | 6 - inst/doc/vignette-00-installation.Rmd | 12 +- inst/doc/vignette-00-installation.html | 20 ++- inst/doc/vignette-01-tutorial.Rmd | 2 inst/doc/vignette-01-tutorial.html | 12 +- inst/doc/vignette-02-grid-model.html | 6 - inst/doc/vignette-05-tree-sequences.html | 6 - inst/doc/vignette-06-locations.Rmd | 2 inst/doc/vignette-06-locations.html | 3 inst/doc/vignette-07-backends.R | 4 inst/doc/vignette-07-backends.Rmd | 4 inst/doc/vignette-07-backends.html | 4 inst/doc/vignette-08-nonslendr-tskit.html | 4 inst/doc/vignette-09-paper.html | 8 - inst/pylib/pylib.py | 34 +++++ man/as.phylo.slendr_phylo.Rd | 4 man/ts_afs.Rd | 13 +- man/ts_ibd.Rd |only tests/testthat/test-ibd.R |only tests/testthat/test-msprime.R | 40 +++--- tests/testthat/test-ts-pure-nonspatial.R | 51 ++++++++ tests/testthat/test-ts-pure-spatial.R | 28 ++++ tests/testthat/test-ts.R | 79 +++++++++++++ vignettes/vignette-00-installation.Rmd | 12 +- vignettes/vignette-01-tutorial.Rmd | 2 vignettes/vignette-06-locations.Rmd | 2 vignettes/vignette-07-backends.Rmd | 4 32 files changed, 510 insertions(+), 104 deletions(-)
Title: Collection of Helper Functions
Description: Provides a collection of lightweight helper functions (imps) both
for interactive use and for inclusion within other packages. These include
minimal assertion functions with a focus on informative error messaging for
both missing and incorrect function arguments as well as other functions for
visualising colour palettes, quoting user input and searching rows of a data
frame.
Author: Tim Taylor [aut, cre, cph]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between ympes versions 0.3.0 dated 2023-01-05 and 0.4.0 dated 2023-03-09
ympes-0.3.0/ympes/R/ageutils.R |only ympes-0.3.0/ympes/R/data.R |only ympes-0.3.0/ympes/R/deprecated-ages_to_interval.R |only ympes-0.3.0/ympes/R/deprecated-imp_assert.R |only ympes-0.3.0/ympes/R/deprecated.R |only ympes-0.3.0/ympes/R/wip.R |only ympes-0.3.0/ympes/build |only ympes-0.3.0/ympes/data |only ympes-0.3.0/ympes/inst/doc |only ympes-0.3.0/ympes/inst/include |only ympes-0.3.0/ympes/inst/tinytest/test_aggregate_age_counts.R |only ympes-0.3.0/ympes/inst/tinytest/test_breaks_to_interval.R |only ympes-0.3.0/ympes/inst/tinytest/test_cut_ages.R |only ympes-0.3.0/ympes/inst/tinytest/test_reaggregate_age_counts.R |only ympes-0.3.0/ympes/inst/tinytest/test_split_interval_counts.R |only ympes-0.3.0/ympes/man/ages_to_interval-deprecated.Rd |only ympes-0.3.0/ympes/man/ageutils.Rd |only ympes-0.3.0/ympes/man/imp_assert-deprecated.Rd |only ympes-0.3.0/ympes/man/pop_dat.Rd |only ympes-0.3.0/ympes/man/ympes-deprecated.Rd |only ympes-0.3.0/ympes/src |only ympes-0.3.0/ympes/vignettes |only ympes-0.4.0/ympes/DESCRIPTION | 20 +-- ympes-0.4.0/ympes/MD5 | 56 +++------- ympes-0.4.0/ympes/NAMESPACE | 2 ympes-0.4.0/ympes/NEWS.md | 28 +++-- ympes-0.4.0/ympes/R/assert.R | 5 ympes-0.4.0/ympes/R/cc.R | 6 - ympes-0.4.0/ympes/R/defunct.R |only ympes-0.4.0/ympes/R/greprows.R | 11 - ympes-0.4.0/ympes/R/new_package.R |only ympes-0.4.0/ympes/R/palette.R | 6 - ympes-0.4.0/ympes/R/ympes-package.R | 3 ympes-0.4.0/ympes/README.md | 2 ympes-0.4.0/ympes/inst/skeletons |only ympes-0.4.0/ympes/man/greprows.Rd | 1 ympes-0.4.0/ympes/man/new_package.Rd |only ympes-0.4.0/ympes/man/ympes-defunct.Rd |only ympes-0.4.0/ympes/man/ympes-package.Rd | 4 39 files changed, 72 insertions(+), 72 deletions(-)
Title: Reconstructing Reproducible R Computational Environments
Description: Resolve the dependency graph of R packages at a specific time point based on the information from various 'R-hub' web services <https://blog.r-hub.io/>. The dependency graph can then be used to reconstruct the R computational environment with 'Rocker' <https://rocker-project.org>.
Author: Chung-hong Chan [aut, cre] ,
David Schoch [aut]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between rang versions 0.1.0 dated 2023-02-16 and 0.2.0 dated 2023-03-09
rang-0.1.0/rang/R/json.R |only rang-0.2.0/rang/DESCRIPTION | 15 rang-0.2.0/rang/MD5 | 95 +++-- rang-0.2.0/rang/NAMESPACE | 9 rang-0.2.0/rang/R/as_pkgrefs.R |only rang-0.2.0/rang/R/edgelist.R |only rang-0.2.0/rang/R/installation.R | 343 ++++++++++++------ rang-0.2.0/rang/R/memo_misc.R | 54 ++ rang-0.2.0/rang/R/pkgref.R | 63 ++- rang-0.2.0/rang/R/resolve.R | 399 +++++++++++---------- rang-0.2.0/rang/R/sysdata.rda |binary rang-0.2.0/rang/R/sysreqs.R |only rang-0.2.0/rang/README.md | 38 +- rang-0.2.0/rang/inst/CITATION |only rang-0.2.0/rang/inst/compile_r.sh | 5 rang-0.2.0/rang/inst/doc/faq.R | 8 rang-0.2.0/rang/inst/doc/faq.Rmd | 77 +--- rang-0.2.0/rang/inst/doc/faq.html | 65 +-- rang-0.2.0/rang/inst/footer.R | 28 - rang-0.2.0/rang/inst/header.R | 178 +++++---- rang-0.2.0/rang/inst/header_cmd.R |only rang-0.2.0/rang/man/as_pkgrefs.Rd |only rang-0.2.0/rang/man/convert_edgelist.Rd |only rang-0.2.0/rang/man/dockerize.Rd | 20 - rang-0.2.0/rang/man/export_rang.Rd | 7 rang-0.2.0/rang/man/export_renv.Rd |only rang-0.2.0/rang/man/query_sysreqs.Rd | 2 rang-0.2.0/rang/man/resolve.Rd | 10 rang-0.2.0/rang/tests/testdata/askpass |only rang-0.2.0/rang/tests/testdata/askpass_1.1.tar.gz |only rang-0.2.0/rang/tests/testdata/bioc_renv.RDS |only rang-0.2.0/rang/tests/testdata/fakeRhtslib |only rang-0.2.0/rang/tests/testdata/fakeRhtslib.tar.gz |only rang-0.2.0/rang/tests/testdata/fake_renv.lock |only rang-0.2.0/rang/tests/testdata/fakexml2 |only rang-0.2.0/rang/tests/testdata/fakezlibbioc |only rang-0.2.0/rang/tests/testdata/gsl_query_res.RDS |only rang-0.2.0/rang/tests/testdata/large_renv_lock |only rang-0.2.0/rang/tests/testdata/local_renv_lock |only rang-0.2.0/rang/tests/testdata/rang_bioc.RDS |only rang-0.2.0/rang/tests/testdata/rang_local_gh.RDS |only rang-0.2.0/rang/tests/testdata/sessionInfo1.RDS |only rang-0.2.0/rang/tests/testdata/sessionInfo2.RDS |only rang-0.2.0/rang/tests/testdata/sessionInfo3.RDS |only rang-0.2.0/rang/tests/testdata/small_renv_lock |only rang-0.2.0/rang/tests/testdata/sna_0.3.tar.gz |only rang-0.2.0/rang/tests/testdata/superancientsna.RDS |only rang-0.2.0/rang/tests/testdata/sysreqs_gmp.RDS |only rang-0.2.0/rang/tests/testdata/test_dir |only rang-0.2.0/rang/tests/testthat/test_dockerize.R | 76 +++- rang-0.2.0/rang/tests/testthat/test_edgelist.R |only rang-0.2.0/rang/tests/testthat/test_expost_rang.R | 94 ++++ rang-0.2.0/rang/tests/testthat/test_pkgref.R | 120 ++++++ rang-0.2.0/rang/tests/testthat/test_resolve.R | 230 +++++++++++- rang-0.2.0/rang/tests/testthat/test_sysreqs.R |only rang-0.2.0/rang/vignettes/faq.Rmd | 77 +--- 56 files changed, 1365 insertions(+), 648 deletions(-)
Title: Graphical Independence Networks
Description: Probability propagation in graphical independence networks, also
known as Bayesian networks or probabilistic expert systems. Documentation
of the package is provided in vignettes included in the package and in
the paper by Højsgaard (2012, <doi:10.18637/jss.v046.i10>).
See 'citation("gRain")' for details.
Author: Soeren Hoejsgaard <sorenh@math.aau.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between gRain versions 1.3.12 dated 2022-11-17 and 1.3.13 dated 2023-03-09
DESCRIPTION | 8 +++---- MD5 | 28 ++++++++++++------------- NEWS | 5 ++++ R/cpt.R | 2 - inst/CITATION | 4 +-- inst/doc/grain-intro.R | 3 -- inst/doc/grain-intro.Rnw | 5 ---- inst/doc/grain-intro.pdf |binary vignettes/figures/grain-chest-LS-1.pdf |binary vignettes/figures/grain-unnamed-chunk-34-1.pdf |binary vignettes/figures/grain-unnamed-chunk-35-1.pdf |binary vignettes/figures/grain-unnamed-chunk-39-1.pdf |binary vignettes/figures/grain-unnamed-chunk-40-1.pdf |binary vignettes/figures/grain-unnamed-chunk-41-1.pdf |binary vignettes/grain-intro.Rnw | 5 ---- 15 files changed, 28 insertions(+), 32 deletions(-)
Title: Helpful Functions from Oliver Wyman Actuarial Consulting
Description: Makes difficult operations easy. Includes these types of functions:
shorthand, type conversion, data wrangling, and work flow.
Also includes some helpful data objects: NA strings, U.S. state list, color blind charting colors.
Built and shared by Oliver Wyman Actuarial Consulting. Accepting proposed contributions through GitHub.
Author: Oliver Wyman Actuarial Consulting [aut, cph],
Bryce Chamberlain [aut, cre],
Rajesh Sahasrabuddhe [ctb]
Maintainer: Bryce Chamberlain <bryce.chamberlain@oliverwyman.com>
Diff between easyr versions 0.5-10 dated 2022-10-27 and 0.5-11 dated 2023-03-09
DESCRIPTION | 11 +++++------ MD5 | 16 ++++++++-------- R/hashfiles.R | 2 +- R/jrepl.R | 4 ++-- R/read.any.R | 11 ++++++++--- data/cblind.rda |binary data/nastrings.rda |binary tests/testthat/test_ecopy.R | 2 +- tests/testthat/test_read.any.R | 33 ++++++++++++++++++--------------- 9 files changed, 43 insertions(+), 36 deletions(-)
Title: Causal Modeling with Coincidence Analysis
Description: Provides comprehensive functionalities for causal modeling with Coincidence Analysis (CNA), which is a configurational comparative method of causal data analysis that was first introduced in Baumgartner (2009) <doi:10.1177/0049124109339369>, and generalized in Baumgartner & Ambuehl (2018) <doi:10.1017/psrm.2018.45>. CNA is designed to recover INUS-causation from data, which is particularly relevant for analyzing processes featuring conjunctural causation (component causation) and equifinality (alternative causation). CNA is currently the only method for INUS-discovery that allows for multiple effects (outcomes/endogenous factors), meaning it can analyze common-cause and causal chain structures.
Author: Mathias Ambuehl [aut, cre, cph],
Michael Baumgartner [aut, cph],
Ruedi Epple [ctb],
Veli-Pekka Parkkinen [ctb],
Alrik Thiem [ctb]
Maintainer: Mathias Ambuehl <mathias.ambuehl@consultag.ch>
Diff between cna versions 3.5.0 dated 2023-02-17 and 3.5.1 dated 2023-03-09
DESCRIPTION | 8 MD5 | 28 - NAMESPACE | 3 R/cna.r | 2 R/ctiList.R | 9 R/details.R | 5 R/is.inus.R | 3 R/redundant.R | 4 inst/NEWS | 3 inst/doc/cna.pdf |binary man/cna-internals.Rd | 4 man/cna-package.Rd | 4 man/cna.Rd | 1052 +++++++++++++++++++++++++-------------------------- man/condition.Rd | 440 ++++++++++----------- man/configTable.Rd | 316 +++++++-------- 15 files changed, 946 insertions(+), 935 deletions(-)
Title: Multivariate Synthetic Control Method Using Time Series
Description: Three generalizations of the synthetic control method (which has
already an implementation in package 'Synth') are implemented: first,
'MSCMT' allows for using multiple outcome variables, second, time series
can be supplied as economic predictors, and third, a well-defined
cross-validation approach can be used.
Much effort has been taken to make the implementation as stable as possible
(including edge cases) without losing computational efficiency.
A detailed description of the main algorithms is given in
Becker and Klößner (2018) <doi:10.1016/j.ecosta.2017.08.002>.
Author: Martin Becker [aut, cre] ,
Stefan Kloeßner [aut],
Karline Soetaert [com],
Jack Dongarra [cph],
R.J. Hanson [cph],
K.H. Haskell [cph],
Cleve Moler [cph],
LAPACK authors [cph]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>
Diff between MSCMT versions 1.3.5 dated 2023-02-01 and 1.3.6 dated 2023-03-09
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 9 +++++++++ R/ggplot.r | 21 ++++++++++++++++----- build/partial.rdb |binary inst/doc/WorkingWithMSCMT.html | 20 ++++++++++---------- man/ggplot.mscmt.Rd | 20 +++++++++++++++++--- 7 files changed, 62 insertions(+), 28 deletions(-)
Title: Vegetation Patterns
Description: Find, visualize and explore patterns of differential taxa in
vegetation data (namely in a phytosociological table), using the
Differential Value (DiffVal). Patterns are searched through
mathematical optimization algorithms. Ultimately, Total Differential
Value (TDV) optimization aims at obtaining classifications of
vegetation data based on differential taxa, as in the traditional
geobotanical approach. The Gurobi optimizer, as well as the R package
'gurobi', can be installed from
<https://www.gurobi.com/products/gurobi-optimizer/>. The useful
vignette Gurobi Installation Guide, from package 'prioritizr', can be
found here:
<https://prioritizr.net/articles/gurobi_installation_guide.html>.
Author: Tiago Monteiro-Henriques [aut, cre]
,
Jorge Orestes Cerdeira [aut] ,
Fundacao para a Ciencia e a Tecnologia, Portugal [fnd]
Maintainer: Tiago Monteiro-Henriques <tmh.dev@icloud.com>
Diff between diffval versions 1.0.0 dated 2022-11-14 and 1.1.0 dated 2023-03-09
DESCRIPTION | 32 +++++---- MD5 | 30 ++++----- NAMESPACE | 1 NEWS.md | 14 ++++ R/bigdata_tdv.R |only R/optim_tdv_gurobi_k_2.R | 5 - R/optim_tdv_hill_climb.R | 36 ++++++---- R/optim_tdv_simul_anne.R | 14 ++-- R/tabulation.R | 9 +- R/taxus_bin.R | 8 +- R/utils.R | 145 +++++++++++++++++++++++++++++++++++++++----- README.md | 4 - man/bigdata_tdv.Rd |only man/optim_tdv_gurobi_k_2.Rd | 5 - man/optim_tdv_hill_climb.Rd | 30 ++++----- man/optim_tdv_simul_anne.Rd | 14 ++-- man/taxus_bin.Rd | 8 +- 17 files changed, 250 insertions(+), 105 deletions(-)
Title: Fitting and Simulating Mixtures of Watson Distributions
Description: Tools for fitting and simulating mixtures of Watson distributions.
The random sampling scheme of the package offers two sampling
algorithms that are based of the results of Sablica, Hornik and Leydold (2022)
<https://research.wu.ac.at/en/publications/random-sampling-from-the-watson-distribution>.
What is more, the package offers a smart tool to combine these two methods,
and based on the selected parameters, it approximates the relative sampling
speed for both methods and picks the faster one. In addition, the package
offers a fitting function for the mixtures of Watson distribution, that
uses the expectation-maximization (EM) algorithm. Special features are
the possibility to use multiple variants of the E-step and M-step,
sparse matrices for the data representation and state of the art methods
for numerical evaluation of needed special functions using the results of
Sablica and Hornik (2022) <https://www.ams.org/journals/mcom/2022-91-334/S0025-5718-2021-03690-X/>.
Author: Lukas Sablica [aut, cre] ,
Kurt Hornik [aut] ,
Josef Leydold [aut],
Gerard Jungman [ctb, cph] ,
Brian Gough [ctb, cph]
Maintainer: Lukas Sablica <lsablica@wu.ac.at>
Diff between watson versions 0.1 dated 2022-10-12 and 0.2 dated 2023-03-09
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 7 +++++++ R/RcppExports.R | 5 ++--- man/rmwat.Rd | 4 +--- src/Makevars | 2 +- src/Makevars.win | 2 +- src/RcppExports.cpp | 9 ++++----- src/rwat.cpp | 5 ++--- 9 files changed, 29 insertions(+), 27 deletions(-)
Title: Vector Generalized Linear and Additive Models
Description: An implementation of about 6 major classes of
statistical regression models. The central algorithm is
Fisher scoring and iterative reweighted least squares.
At the heart of this package are the vector generalized linear
and additive model (VGLM/VGAM) classes. VGLMs can be loosely
thought of as multivariate GLMs. VGAMs are data-driven
VGLMs that use smoothing. The book "Vector Generalized
Linear and Additive Models: With an Implementation in R"
(Yee, 2015) <DOI:10.1007/978-1-4939-2818-7> gives details of
the statistical framework and the package. Currently only
fixed-effects models are implemented. Many (100+) models and
distributions are estimated by maximum likelihood estimation
(MLE) or penalized MLE. The other classes are RR-VGLMs
(reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs,
RCIMs (row-column interaction models)---these classes perform
constrained and unconstrained quadratic ordination (CQO/UQO)
models in ecology, as well as constrained additive ordination
(CA [...truncated...]
Author: Thomas Yee [aut, cre] ,
Cleve Moler [ctb]
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>
Diff between VGAM versions 1.1-7 dated 2022-07-06 and 1.1-8 dated 2023-03-09
DESCRIPTION | 10 MD5 | 406 +++++++++---------- NAMESPACE | 23 - NEWS | 29 + R/Links.R | 2 R/Linksold.R | 2 R/aamethods.q | 2 R/anova.vglm.q | 2 R/attrassign.R | 2 R/bAIC.q | 2 R/build.terms.vlm.q | 2 R/calibrate.R | 2 R/cao.R | 2 R/cao.fit.q | 2 R/coef.vlm.q | 9 R/confint.vlm.R | 2 R/cqo.R | 2 R/cqo.fit.q | 2 R/deviance.vlm.q | 21 R/effects.vglm.q | 2 R/family.actuary.R | 2 R/family.aunivariate.R | 9 R/family.basics.R | 2 R/family.binomial.R | 6 R/family.bivariate.R | 2 R/family.categorical.R | 904 +++++++++++++++++++++++++++++++------------ R/family.censored.R | 2 R/family.circular.R | 2 R/family.exp.R | 2 R/family.extremes.R | 88 ++-- R/family.functions.R | 2 R/family.gait0.R | 2 R/family.gaitd.R | 12 R/family.genetic.R | 2 R/family.glmgam.R | 5 R/family.loglin.R | 2 R/family.maths.R | 336 ++++++++++----- R/family.mixture.R | 2 R/family.nbd.R | 5 R/family.nonlinear.R | 2 R/family.normal.R | 2 R/family.oneinf.R | 2 R/family.others.R | 2 R/family.positive.R | 63 +- R/family.qreg.R | 2 R/family.rcim.R | 216 +++++----- R/family.rcqo.R | 2 R/family.robust.R | 2 R/family.rrr.R | 332 ++++++++------- R/family.sur.R | 2 R/family.survival.R | 2 R/family.ts.R | 2 R/family.univariate.R | 124 +++-- R/family.vglm.R | 2 R/family.zeroinf.R | 2 R/fittedvlm.R | 2 R/formula.vlm.q | 2 R/generic.q | 2 R/getxvlmaug.R | 2 R/hdeff.R | 346 +++++++++++++--- R/links.q | 14 R/logLik.vlm.q | 2 R/lrp.R | 2 R/lrwaldtest.R | 2 R/model.matrix.vglm.q | 2 R/mux.q | 2 R/nobs.R | 2 R/plot.vgam.R | 154 ++++--- R/plot.vglm.R | 2 R/predict.vgam.q | 2 R/predict.vglm.q | 2 R/predict.vlm.q | 2 R/print.vglm.q | 2 R/print.vlm.q | 2 R/psv2magic.R | 2 R/qrrvglm.control.q | 2 R/qtplot.q | 2 R/residuals.vlm.q | 2 R/rootogram4.vglm.R | 2 R/rrvglm.R | 2 R/rrvglm.control.q | 12 R/rrvglm.fit.q | 76 ++- R/s.q | 2 R/s.vam.q | 2 R/simulate.vglm.R | 2 R/sm.os.R | 2 R/sm.ps.R | 2 R/smart.R | 2 R/step4.vglm.R | 2 R/summary.vgam.q | 2 R/summary.vglm.q | 34 + R/summary.vlm.q | 2 R/vcov.pvgam.R | 2 R/vgam.R | 2 R/vgam.control.q | 2 R/vgam.fit.q | 2 R/vgam.match.q | 2 R/vglm.R | 2 R/vglm.control.q | 2 R/vglm.fit.q | 2 R/vlm.R | 2 R/vlm.wfit.q | 2 R/vsmooth.spline.q | 2 R/wald0.R | 2 build/partial.rdb |binary data/Huggins89.t1.rda |binary data/Huggins89table1.rda |binary data/alclevels.rda |binary data/alcoff.rda |binary data/auuc.rda |binary data/backPain.rda |binary data/backPain2.rda |binary data/beggs.rda |binary data/budworm.rda |only data/car.all.rda |binary data/cfibrosis.rda |binary data/corbet.rda |binary data/crashbc.rda |binary data/crashf.rda |binary data/crashi.rda |binary data/crashmc.rda |binary data/crashp.rda |binary data/crashtr.rda |binary data/deermice.rda |binary data/ducklings.rda |binary data/finney44.rda |binary data/flourbeetle.rda |binary data/hspider.rda |binary data/lakeO.rda |binary data/leukemia.rda |binary data/lpossums.rda |binary data/marital.nz.rda |binary data/melbmaxtemp.rda |binary data/pneumo.rda |binary data/prinia.rda |binary data/ruge.rda |binary data/toxop.rda |binary data/venice.rda |binary data/venice90.rda |binary data/wine.rda |binary inst/CITATION | 48 +- man/CommonVGAMffArguments.Rd | 22 - man/VGAM-package.Rd | 18 man/acat.Rd | 76 ++- man/alaplace3.Rd | 61 +- man/amlnormal.Rd | 68 +-- man/auxposbernoulli.t.Rd | 6 man/betageometric.Rd | 1 man/betaprime.Rd | 3 man/binom2.or.Rd | 1 man/bisa.Rd | 2 man/budworm.Rd |only man/cdf.lmscreg.Rd | 3 man/cens.gumbel.Rd | 3 man/cens.normal.Rd | 37 - man/coefvlm.Rd | 5 man/corbet.Rd | 14 man/cratio.Rd | 52 +- man/cumulative.Rd | 225 +++++++--- man/dirmul.old.Rd | 2 man/dirmultinomial.Rd | 1 man/expexpff.Rd | 2 man/expint3.Rd | 7 man/gamma2.Rd | 3 man/garma.Rd | 13 man/genbetaII.Rd | 53 +- man/gengamma.Rd | 6 man/genpoisson0.Rd | 2 man/genpoisson1.Rd | 2 man/genpoisson2.Rd | 8 man/gpd.Rd | 5 man/hdeff.Rd | 118 +++-- man/hdeffsev.Rd | 123 ++++- man/is.zero.Rd | 3 man/lms.bcg.Rd | 1 man/lms.yjn.Rd | 2 man/logff.Rd | 4 man/loglaplace.Rd | 1 man/loglinb3.Rd | 1 man/margeff.Rd | 9 man/nakagami.Rd | 5 man/negbinomial.Rd | 3 man/negbinomial.size.Rd | 1 man/notdocumentedyet.Rd | 11 man/ordpoisson.Rd | 1 man/paralogistic.Rd | 3 man/poissonff.Rd | 3 man/posnegbinomial.Rd | 3 man/pospoisson.Rd | 5 man/sc.studentt2.Rd | 5 man/seglines.Rd | 41 + man/seq2binomial.Rd | 38 - man/sratio.Rd | 69 ++- man/undocumented-methods.Rd | 4 man/vcovvlm.Rd | 10 man/vglm.Rd | 4 man/vglm.control.Rd | 62 +- man/weibull.mean.Rd | 5 man/yeo.johnson.Rd | 2 man/zabinomial.Rd | 8 man/zageometric.Rd | 8 man/zanegbinomial.Rd | 16 man/zapoisson.Rd | 18 man/zipebcom.Rd | 1 man/zoabetaR.Rd | 1 205 files changed, 3077 insertions(+), 1655 deletions(-)
Title: Search and Retrieve Data from Eurostat Database
Description: Eurostat is the statistical office of the European Union and provides high quality statistics for Europe.
Large set of the data is disseminated through the Eurostat database (<https://ec.europa.eu/eurostat/web/main/data/database>).
The tools are using the REST API with the Statistical Data and Metadata eXchange (SDMX) Web Services
(<https://wikis.ec.europa.eu/pages/viewpage.action?pageId=44165555>) to search and download data from
the Eurostat database using the SDMX standard.
Author: Matyas Meszaros [aut, cre]
Maintainer: Matyas Meszaros <matyas.meszaros@ec.europa.eu>
Diff between restatapi versions 0.20.3 dated 2023-02-24 and 0.20.6 dated 2023-03-09
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 15 ++++++++++++++- R/extract_data.R | 2 +- R/get_eurostat_data.R | 7 ++++--- R/get_eurostat_dsd.R | 30 +++++++++++++++++++++--------- R/load_cfg.R | 2 +- README.md | 19 ++++++++++--------- 8 files changed, 62 insertions(+), 35 deletions(-)
Title: 'C++' Header Files for Color Conversion and Color Mappings
Description: Provides 'C++' header files to deal with color conversion
from some color spaces to hexadecimal with 'Rcpp', and exports some
color mapping functions for usage in R. Also exports functions to
convert colors from the 'HSLuv' color space for usage in R. 'HSLuv' is
a human-friendly alternative to HSL.
Author: Stephane Laurent [cre, aut],
Scott Spencer [aut]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between RcppColors versions 0.2.0 dated 2023-02-11 and 0.3.0 dated 2023-03-09
DESCRIPTION | 6 +- MD5 | 22 +++---- NAMESPACE | 1 NEWS.md | 7 ++ R/RcppExports.R | 12 ++-- R/colorMaps.R | 65 ++++++++++++++++++++-- README.md | 7 ++ man/colorMaps.Rd | 23 +++++++- src/Makevars | 3 - src/Makevars.win | 3 - src/RcppColors.cpp | 148 +++++++++++++++++++++++++++++++++++++++++++++------- src/RcppExports.cpp | 35 +++++++++--- 12 files changed, 277 insertions(+), 55 deletions(-)
Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] ,
Florian De Boissieu [ctb] ,
Andrew Sanchez Meador [ctb] for
segment_snags),
Bourdon Jean-Francois [ctb] for
track_sensor),
Gatziolis Demetrios [ctb] for
track_sensor),
Leon Steinmeier [c [...truncated...]
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between lidR versions 4.0.2 dated 2022-12-15 and 4.0.3 dated 2023-03-09
DESCRIPTION | 6 ++-- MD5 | 49 +++++++++++++++++------------------ NAMESPACE | 1 NEWS.md | 7 +++++ R/add_attribute.R | 22 +++++++++++++++ R/algorithm-itd.R | 4 +- R/io_readLAS.R | 2 - R/methods-LAS.R | 3 +- R/metrics_plot.R | 5 +++ R/plot.R | 6 ++-- R/plot.s3.R | 2 - R/st_as_sf.R | 4 +- R/utils_raster.R | 10 +------ inst/CITATION | 6 ++-- inst/doc/lidR-LAS-class.R | 2 - inst/doc/lidR-LAS-class.Rmd | 2 - inst/doc/lidR-LAScatalog-engine.R | 2 - inst/doc/lidR-LAScatalog-engine.Rmd | 2 - man/add_attribute.Rd | 6 +++- src/Makevars | 1 src/Makevars.win | 1 tests/testthat/Rplots.pdf |only tests/testthat/test-metrics_plots.R | 10 +++++++ tests/testthat/test-plot.R | 32 +++++++++++----------- vignettes/lidR-LAS-class.Rmd | 2 - vignettes/lidR-LAScatalog-engine.Rmd | 2 - 26 files changed, 115 insertions(+), 74 deletions(-)
Title: Improved Predictors
Description: Improved predictive models by indirect classification and
bagging for classification, regression and survival problems
as well as resampling based estimators of prediction error.
Author: Andrea Peters [aut],
Torsten Hothorn [aut, cre],
Brian D. Ripley [ctb],
Terry Therneau [ctb],
Beth Atkinson [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between ipred versions 0.9-13 dated 2022-06-02 and 0.9-14 dated 2023-03-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 3 ++- build/vignette.rds |binary inst/NEWS | 4 ++++ inst/doc/ipred-examples.pdf |binary 6 files changed, 15 insertions(+), 10 deletions(-)
Title: Importing Vector Graphics
Description: Functions for converting, importing, and drawing PostScript
pictures in R plots.
Author: Paul Murrell [aut, cre],
Richard Walton [aut],
Simon Potter [ctb],
Tomas Kalibera [ctb],
Harold Gutch [ctb]
Maintainer: Paul Murrell <p.murrell@auckland.ac.nz>
Diff between grImport versions 0.9-5 dated 2021-11-01 and 0.9-7 dated 2023-03-09
DESCRIPTION | 14 +++++++++----- MD5 | 14 +++++++------- R/PostScript2RGML.R | 10 ++-------- build/vignette.rds |binary inst/CITATION | 4 ++-- inst/doc/changes.txt | 16 ++++++++++++++++ inst/doc/import.pdf |binary inst/doc/importText.pdf |binary 8 files changed, 36 insertions(+), 22 deletions(-)
Title: Fuzzy Linear Regression
Description: Estimators for fuzzy linear regression. The functions estimate parameters of
fuzzy linear regression models with crisp or fuzzy independent variables (triangular
fuzzy numbers are supported). Implements multiple methods for parameter estimation and
algebraic operations with triangular fuzzy numbers. Includes functions for
summarising, printing and plotting the model fit. Calculates predictions from the
model and total error of fit. Individual methods are described in
Diamond (1988) <doi:10.1016/0020-0255(88)90047-3>,
Hung & Yang (2006) <doi:10.1016/j.fss.2006.08.004>,
Lee & Tanaka (1999) <doi:10.15807/jorsj.42.98>,
Nasrabadi, Nasrabadi & Nasrabady (2005) <doi:10.1016/j.amc.2004.02.008>,
Skrabanek, Marek & Pozdilkova (2021) <doi:10.3390/math9060685>,
Tanaka, Hayashi & Watada (1989) <doi:10.1016/0377-2217(89)90431-1>,
Zeng, Feng & Li (2017) <doi:10.1016/j.asoc.2016.09.029>.
Author: Pavel Skrabanek [aut, cph],
Natalia Martinkova [aut, cre, cph]
Maintainer: Natalia Martinkova <martinkova@ivb.cz>
Diff between fuzzyreg versions 0.6 dated 2022-03-02 and 0.6.1 dated 2023-03-09
fuzzyreg-0.6.1/fuzzyreg/DESCRIPTION | 15 fuzzyreg-0.6.1/fuzzyreg/MD5 | 75 +-- fuzzyreg-0.6.1/fuzzyreg/NEWS.md |only fuzzyreg-0.6.1/fuzzyreg/R/TEF.r | 2 fuzzyreg-0.6.1/fuzzyreg/R/bfrl.r | 4 fuzzyreg-0.6.1/fuzzyreg/R/coef.fuzzylm.R | 5 fuzzyreg-0.6.1/fuzzyreg/R/fuzzify.R | 45 +- fuzzyreg-0.6.1/fuzzyreg/R/predict.fuzzylm.R | 15 fuzzyreg-0.6.1/fuzzyreg/R/print.summary.fuzzylm.R | 15 fuzzyreg-0.6.1/fuzzyreg/R/summary.fuzzylm.R | 16 fuzzyreg-0.6.1/fuzzyreg/build/vignette.rds |binary fuzzyreg-0.6.1/fuzzyreg/inst/doc/GettingStarted.R | 201 ++-------- fuzzyreg-0.6.1/fuzzyreg/inst/doc/GettingStarted.Rmd |only fuzzyreg-0.6.1/fuzzyreg/inst/doc/GettingStarted.html |only fuzzyreg-0.6.1/fuzzyreg/man/GOF.Rd | 12 fuzzyreg-0.6.1/fuzzyreg/man/TEF.Rd | 18 fuzzyreg-0.6.1/fuzzyreg/man/bats.Rd | 28 - fuzzyreg-0.6.1/fuzzyreg/man/bfrl.Rd | 22 - fuzzyreg-0.6.1/fuzzyreg/man/coef.fuzzylm.Rd | 10 fuzzyreg-0.6.1/fuzzyreg/man/dom.Rd | 4 fuzzyreg-0.6.1/fuzzyreg/man/flar.Rd | 18 fuzzyreg-0.6.1/fuzzyreg/man/fls.Rd | 10 fuzzyreg-0.6.1/fuzzyreg/man/fuzzify.Rd | 42 +- fuzzyreg-0.6.1/fuzzyreg/man/fuzzydat.Rd | 24 - fuzzyreg-0.6.1/fuzzyreg/man/fuzzylm.Rd | 58 +- fuzzyreg-0.6.1/fuzzyreg/man/moflr.Rd | 30 - fuzzyreg-0.6.1/fuzzyreg/man/oplr.Rd | 30 - fuzzyreg-0.6.1/fuzzyreg/man/plot.fuzzylm.Rd | 16 fuzzyreg-0.6.1/fuzzyreg/man/plr.Rd | 22 - fuzzyreg-0.6.1/fuzzyreg/man/plrls.Rd | 16 fuzzyreg-0.6.1/fuzzyreg/man/predict.fuzzylm.Rd | 8 fuzzyreg-0.6.1/fuzzyreg/man/prodFuzzy.Rd | 4 fuzzyreg-0.6.1/fuzzyreg/man/prodSfuzzy.Rd | 4 fuzzyreg-0.6.1/fuzzyreg/man/sumFuzzy.Rd | 6 fuzzyreg-0.6.1/fuzzyreg/man/summary.fuzzylm.Rd | 2 fuzzyreg-0.6.1/fuzzyreg/tests/testthat/test_correctSolution.R | 3 fuzzyreg-0.6.1/fuzzyreg/tests/testthat/test_performance.R | 15 fuzzyreg-0.6.1/fuzzyreg/vignettes/GettingStarted.Rmd |only fuzzyreg-0.6/fuzzyreg/NEWS |only fuzzyreg-0.6/fuzzyreg/inst/doc/GettingStarted.Rnw |only fuzzyreg-0.6/fuzzyreg/inst/doc/GettingStarted.pdf |only fuzzyreg-0.6/fuzzyreg/vignettes/GettingStarted.Rnw |only fuzzyreg-0.6/fuzzyreg/vignettes/references.bib |only 43 files changed, 362 insertions(+), 433 deletions(-)
Title: Tidy and Geospatial Kernel Smoothing
Description: Extensions of the kernel smoothing functions from the 'ks' package for compatibility with the tidyverse and geospatial ecosystems <doi:10.48550/arXiv.2203.01686>.
Author: Tarn Duong [aut, cre]
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between eks versions 1.0.2 dated 2022-11-29 and 1.0.3 dated 2023-03-09
CHANGELOG | 6 DESCRIPTION | 8 - MD5 | 14 - R/sf-ks-prelim.R | 2 R/tidy-ks-prelim.R | 6 build/vignette.rds |binary inst/doc/tidysf_kde.html | 351 +++++++++++++++++++++++++++++++++++++++++------ man/contour.Rd | 7 8 files changed, 336 insertions(+), 58 deletions(-)
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt'. Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Barbanti and Hothorn, 2022, <arxiv:1910.09219>).
Multivariate conditional transformation models (Klein et al, 2022, <DOI:10.1111/sjos.12501>)
can be fitted as well.
Author: Torsten Hothorn [aut, cre] ,
Luisa Barbanti [aut] ,
Sandra Siegfried [aut] ,
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 0.8-0 dated 2022-11-02 and 0.8-1 dated 2023-03-09
DESCRIPTION | 8 +- MD5 | 35 +++++++------ NAMESPACE | 7 +- R/ltmatrices.R | 135 +++++++++++--------------------------------------- R/methods.R | 6 +- R/mmlt.R | 139 +++++++++++++++++++++++++++++++++++++++++++++++++++- R/mtram.R | 8 -- R/tram.R | 20 +++---- inst/CITATION | 26 ++------- inst/NEWS.Rd | 11 ++++ inst/doc/mtram.pdf |binary inst/doc/tram.pdf |binary man/mmlt.Rd | 5 + man/mtram.Rd | 4 - man/tram-methods.Rd | 2 src/Makevars |only src/init.c | 9 ++- src/ltmatrices.c |only tests/bugfixes.R | 45 ++++++++++++++++ tests/mmlt-Ex.R |only 20 files changed, 291 insertions(+), 169 deletions(-)
Title: Create Custom Plots for Viewing Genetic Association Results
Description: A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.
Author: Thorhildur Juliusdottir [cph, aut, cre],
Andri Stefansson [aut]
Maintainer: Thorhildur Juliusdottir <totajuliusd@gmail.com>
Diff between topr versions 1.1.3 dated 2023-02-12 and 1.1.4 dated 2023-03-09
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- NEWS.md | 4 ++++ R/effectplot.R | 8 ++++---- R/get_genes_and_annotation.R | 2 +- R/locuszoomplot.R | 2 +- R/manhattan.R | 4 ++-- R/regionplot.R | 2 +- R/setters_and_getters.R | 8 ++++---- R/topr.R | 2 -- man/effectplot.Rd | 6 +++--- man/get_lead_snps.Rd | 6 +++--- man/get_snpset.Rd | 4 ++-- man/locuszoom.Rd | 4 ++-- man/manhattan.Rd | 4 ++-- man/regionplot.Rd | 4 ++-- man/topr.Rd | 2 -- 17 files changed, 51 insertions(+), 51 deletions(-)
Title: DBI Connector to Presto
Description: Implements a 'DBI' compliant interface to Presto. Presto is
an open source distributed SQL query engine for running interactive
analytic queries against data sources of all sizes ranging from
gigabytes to petabytes: <https://prestodb.io/>.
Author: Onur Ismail Filiz [aut],
Sergey Goder [aut],
Jarod G.R. Meng [aut, cre],
Thomas J. Leeper [ctb],
John Myles White [ctb]
Maintainer: Jarod G.R. Meng <jarodm@fb.com>
Diff between RPresto versions 1.4.3 dated 2023-03-03 and 1.4.4 dated 2023-03-09
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 7 +++++++ R/dbplyr-db.R | 2 +- R/dbplyr-src.R | 13 +++++++++---- inst/doc/common-table-expressions.html | 2 +- inst/doc/complex-types.html | 2 +- inst/doc/primitive-types.html | 2 +- man/dplyr_function_implementations.Rd | 2 +- man/dplyr_source_function_implementations.Rd | 6 ++---- tests/testthat/test-dplyr.integration.R | 11 +++++++++++ 11 files changed, 48 insertions(+), 27 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <https://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] ,
Heidi Seibold [ctb] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-17 dated 2023-02-28 and 1.2-18 dated 2023-03-09
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 + inst/NEWS.Rd | 8 ++++++++ inst/doc/constparty.pdf |binary inst/doc/ctree.pdf |binary inst/doc/mob.pdf |binary inst/doc/partykit.pdf |binary 8 files changed, 20 insertions(+), 11 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre] ,
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-22 dated 2023-02-10 and 1.4-23 dated 2023-03-09
DESCRIPTION | 8 ++-- MD5 | 14 ++++---- NAMESPACE | 68 ++++++++++++++++++++++++----------------- R/helpers.R | 23 +++++++------ inst/NEWS | 7 ++-- inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary 8 files changed, 68 insertions(+), 52 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2023, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the included version of Eigen [ctb, cph],
Timot [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 0.8.2 dated 2023-02-17 and 1.0.0 dated 2023-03-09
DESCRIPTION | 8 MD5 | 83 R/GPModel.R | 257 - README.md | 10 configure.ac | 2 demo/generalized_linear_Gaussian_process_mixed_effects_models.R | 49 man/GPModel.Rd | 6 man/GPModel_shared_params.Rd | 13 man/fit.GPModel.Rd | 7 man/fit.Rd | 7 man/fitGPModel.Rd | 13 man/predict.GPModel.Rd | 2 man/predict.gpb.Booster.Rd | 2 man/predict_training_data_random_effects.GPModel.Rd | 6 man/predict_training_data_random_effects.Rd | 5 man/set_prediction_data.GPModel.Rd | 2 man/set_prediction_data.Rd | 2 src/DF_utils.cpp | 43 src/Vecchia_utils.cpp | 20 src/boosting/gbdt.h | 2 src/boosting/gbdt_model_text.cpp | 18 src/boosting/gbdt_prediction.cpp | 7 src/boosting/score_updater.hpp | 27 src/c_api.cpp | 40 src/gpboost_R.cpp | 52 src/gpboost_R.h | 47 src/include/GPBoost/DF_utils.h | 21 src/include/GPBoost/cov_fcts.h | 6 src/include/GPBoost/likelihoods.h | 733 ++- src/include/GPBoost/re_comp.h | 20 src/include/GPBoost/re_model.h | 63 src/include/GPBoost/re_model_template.h | 2138 ++++++---- src/include/GPBoost/sparse_matrix_utils.h | 35 src/include/LightGBM/c_api.h | 45 src/include/LightGBM/nesterov_boosting.h |only src/objective/objective_function.cpp | 4 src/re_model.cpp | 122 tests/testthat/test_GPModel_combined_GP_random_effects.R | 23 tests/testthat/test_GPModel_gaussian_process.R | 132 tests/testthat/test_GPModel_grouped_random_effects.R | 95 tests/testthat/test_GPModel_non_Gaussian_data.R | 670 ++- tests/testthat/test_z_GPBoost_algorithm.R | 23 tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data.R | 40 43 files changed, 3356 insertions(+), 1544 deletions(-)
Title: Augments 'ASReml-R' in Fitting Mixed Models and Packages
Generally in Exploring Prediction Differences
Description: Assists in automating the selection of terms to include in mixed models when
'asreml' is used to fit the models. Also used to display, in tables and graphs, predictions
obtained using any model fitting function and to explore differences between predictions.
The content falls into the following natural groupings: (i) Data, (ii) Object
manipulation functions, (iii) Model modification functions, (iv) Model testing functions,
(v) Model diagnostics functions, (vi) Prediction production and presentation functions,
(vii) Response transformation functions, and (viii) Miscellaneous functions (for further
details see 'asremlPlus-package' in help). A history of
the fitting of a sequence of models is kept in a data frame. Procedures are available for
choosing models that conform to the hierarchy or marginality principle and for displaying
predictions for significant terms in tables and graphs. The 'asreml' package provides a
computationally efficient algorithm for fitting mixed models using Resi [...truncated...]
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between asremlPlus versions 4.3.49 dated 2023-03-03 and 4.3.50 dated 2023-03-09
DESCRIPTION | 8 +-- MD5 | 38 ++++++++--------- R/LSDutilities.R | 2 R/alldiffs.v2.r | 76 +++++++++++++++++++++++++++-------- R/asremlPlusUtilities.r | 2 R/plotLSDs.r | 8 +-- R/plotPvalues.r | 4 - R/reml4.v8.r | 63 +++++++++++++++++------------ R/variogram.faces.v5.r | 40 +++++++++--------- build/partial.rdb |binary inst/NEWS.Rd | 12 +++++ inst/doc/Ladybird.asreml.pdf |binary inst/doc/Ladybird.lm.pdf |binary inst/doc/Wheat.analysis.pdf |binary inst/doc/Wheat.infoCriteria.pdf |binary inst/doc/asremlPlus-manual.pdf |binary man/as.predictions.frame.Rd | 14 +++++- man/is.predictions.frame.Rd | 2 man/validPredictionsFrame.Rd | 4 + tests/testthat/testthat-problems.rds |binary 20 files changed, 174 insertions(+), 99 deletions(-)
Title: Interval and Enum-Type Representation of Vectors
Description: Enum-type representation of vectors and representation
of intervals, including a method of coercing variables in data frames.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between inum versions 1.0-4 dated 2021-04-12 and 1.0-5 dated 2023-03-09
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 3 +++ inst/NEWS.Rd | 7 +++++++ 4 files changed, 17 insertions(+), 7 deletions(-)
Title: The Beta-Binomial Test for Count Data
Description: The beta-binomial test is used for significance analysis of independent samples by Pham et al. (2010) <doi:10.1093/bioinformatics/btp677>. The inverted beta-binomial test is used for paired sample testing, e.g. pre-treatment and post-treatment data, by Pham and Jimenez (2012) <doi:10.1093/bioinformatics/bts394>.
Author: Thang Pham [aut, cre, cph, ctb]
Maintainer: Thang Pham <t.pham@amsterdamumc.nl>
Diff between countdata versions 1.2 dated 2021-09-14 and 1.3 dated 2023-03-09
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 12 ++++++------ build/vignette.rds |binary inst/doc/countdata.html | 14 +++++++++++--- src/bb.c | 6 +++--- src/ibb.c | 6 +++--- 7 files changed, 28 insertions(+), 20 deletions(-)
Title: Species Distribution Model Selection
Description: User-friendly framework that enables the training and the
evaluation of species distribution models (SDMs). The package implements
functions for data driven variable selection and model tuning and includes
numerous utilities to display the results. All the functions used to select
variables or to tune model hyperparameters have an interactive real-time
chart displayed in the 'RStudio' viewer pane during their execution.
Author: Sergio Vignali [aut, cre] ,
Arnaud Barras [aut] ,
Veronika Braunisch [aut] ,
Conservation Biology - University of Bern [fnd]
Maintainer: Sergio Vignali <sergio.vignali@unibe.ch>
Diff between SDMtune versions 1.2.0 dated 2022-12-14 and 1.2.1 dated 2023-03-09
DESCRIPTION | 17 +-- MD5 | 142 +++++++++++++-------------- NEWS.md | 5 R/SDMtune-class.R | 2 R/aicc.R | 3 R/chart-utils.R | 2 R/convertFolds.R | 9 + R/doJk.R | 3 R/gridSearch.R | 3 R/modelReport.R | 13 -- R/optimizeModel.R | 3 R/plotCor.R | 14 +- R/plotPA.R | 13 -- R/plotPred.R | 3 R/plotResponse.R | 4 R/predict-SDMmodel.R | 25 ---- R/predict-SDMmodelCV.R | 19 --- R/prepareSWD.R | 3 R/randomFolds.R | 2 R/reduceVar.R | 3 R/thinData.R | 3 R/train.R | 28 ++--- R/utils.R | 8 - R/varSel.R | 3 README.md | 4 build/vignette.rds |binary inst/CITATION | 46 ++------ inst/doc/basic-use.R | 27 ++--- inst/doc/basic-use.Rmd | 27 ++--- inst/doc/basic-use.html | 39 +++---- inst/templates/modelReport.Rmd | 3 man/SDMtune-class.Rd | 2 man/modelReport.Rd | 6 - man/plotCor.Rd | 10 + man/plotPA.Rd | 3 man/predict-SDMmodel-method.Rd | 6 - man/predict-SDMmodelCV-method.Rd | 3 man/randomFolds.Rd | 2 man/train.Rd | 28 ++--- tests/testthat/_snaps/aicc.md | 4 tests/testthat/_snaps/doJk.md | 4 tests/testthat/_snaps/gridSearch.md | 4 tests/testthat/_snaps/modelReport.md | 5 tests/testthat/_snaps/optimizeModel.md | 4 tests/testthat/_snaps/plotPA.md | 10 - tests/testthat/_snaps/plotPred.md | 4 tests/testthat/_snaps/predict-SDMmodel.md | 9 - tests/testthat/_snaps/predict-SDMmodelCV.md | 9 - tests/testthat/_snaps/prepareSWD.md | 4 tests/testthat/_snaps/reduceVar.md | 4 tests/testthat/_snaps/thinData.md | 4 tests/testthat/_snaps/utils.md | 4 tests/testthat/_snaps/varSel.md | 4 tests/testthat/test-aicc.R | 8 - tests/testthat/test-convertFolds.R | 19 +++ tests/testthat/test-doJk.R | 21 +-- tests/testthat/test-gridSearch.R | 21 ++- tests/testthat/test-modelReport.R | 10 - tests/testthat/test-optimizeModel.R | 26 ++-- tests/testthat/test-plotCor.R | 6 - tests/testthat/test-plotPA.R | 14 -- tests/testthat/test-plotPred.R | 7 - tests/testthat/test-predict-Maxent.R | 23 ++-- tests/testthat/test-predict-SDMmodel.R | 34 +++--- tests/testthat/test-predict-SDMmodelCV.R | 32 +++--- tests/testthat/test-prepareSWD.R | 11 +- tests/testthat/test-reduceVar.R | 18 +-- tests/testthat/test-thinData.R | 11 +- tests/testthat/test-utils.R | 4 tests/testthat/test-varSel.R | 16 +-- vignettes/articles/evaluation-strategies.Rmd | 32 ++---- vignettes/basic-use.Rmd | 27 ++--- 72 files changed, 429 insertions(+), 520 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020)
<DOI:10.18637/jss.v092.i01>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.4-3 dated 2022-10-31 and 1.4-5 dated 2023-03-09
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/methods.R | 33 ++++++++++++++++++--------------- R/sample.R | 4 ++-- build/partial.rdb |binary inst/CITATION | 26 +++++++------------------- inst/NEWS.Rd | 18 ++++++++++++++++++ man/mlt-methods.Rd | 4 ++-- src/init.c | 6 ++++-- tests/dpq-Ex.Rout.save | 16 ++++++++-------- 10 files changed, 72 insertions(+), 61 deletions(-)
Title: Automatic Transformation of an 'R' Function into a 'shiny' App
Description: Static code compilation of a 'shiny' app given an R function (into 'ui.R' and 'server.R' files or into a 'shiny' app object). See examples at <https://github.com/alekrutkowski/autoshiny>.
Author: Aleksander Rutkowski [aut, cre]
Maintainer: Aleksander Rutkowski <alek.rutkowski@gmail.com>
Diff between autoshiny versions 0.0.2 dated 2018-06-25 and 0.0.3 dated 2023-03-09
DESCRIPTION | 9 ++--- MD5 | 18 +++++------ NAMESPACE | 93 ++++++++++++++++++++++++++++----------------------------- R/common.R | 2 - R/core.R | 26 +-------------- R/default.R | 2 - R/makeInput.R | 4 +- R/makeOutput.R | 46 ++++++++++++++-------------- R/render.R | 16 ++++----- man/make.Rd | 2 + 10 files changed, 99 insertions(+), 119 deletions(-)
Title: Time Series Forecasting Using Nearest Neighbors
Description: Allows to forecast time series using nearest neighbors regression
Francisco Martinez, Maria P. Frias, Maria D. Perez-Godoy and Antonio J.
Rivera (2019) <doi:10.1007/s10462-017-9593-z>. When the forecasting horizon
is higher than 1, two multi-step ahead forecasting strategies can be used.
The model built is autoregressive, that is, it is only based on the
observations of the time series. The nearest neighbors used in a prediction
can be consulted and plotted.
Author: Francisco Martinez [aut, cre]
Maintainer: Francisco Martinez <fmartin@ujaen.es>
Diff between tsfknn versions 0.5.0 dated 2021-04-05 and 0.5.1 dated 2023-03-09
DESCRIPTION | 10 MD5 | 28 - NEWS.md | 4 R/plotting.R | 37 +- README.md | 3 build/vignette.rds |binary inst/CITATION | 8 inst/doc/tsfknn.html | 696 +++++++++++++++++++++++++++++++++----------- man/autoplot.knnForecast.Rd | 24 - man/knn_examples.Rd | 2 man/knn_forecasting.Rd | 19 - man/nearest_neighbors.Rd | 2 man/rolling_origin.Rd | 16 - man/tsfknn.Rd | 22 - src/RcppExports.cpp | 5 15 files changed, 639 insertions(+), 237 deletions(-)
Title: Methods for Temporal Disaggregation and Interpolation of Time
Series
Description: Temporal disaggregation methods are used to disaggregate and
interpolate a low frequency time series to a higher frequency series, where
either the sum, the mean, the first or the last value of the resulting
high frequency series is consistent with the low frequency series. Temporal
disaggregation can be performed with or without one or more high frequency
indicator series. Contains the methods of Chow-Lin, Santos-Silva-Cardoso,
Fernandez, Litterman, Denton and Denton-Cholette, summarized in Sax and
Steiner (2013) <doi:10.32614/RJ-2013-028>. Supports most R time series
classes.
Author: Christoph Sax [aut, cre] ,
Peter Steiner [aut],
Tommaso Di Fonzo [ctb]
Maintainer: Christoph Sax <christoph.sax@gmail.com>
Diff between tempdisagg versions 1.0 dated 2020-02-07 and 1.1 dated 2023-03-09
DESCRIPTION | 12 - MD5 | 37 ++-- NEWS.md | 15 + R/td.R | 17 -- R/tempdisagg-package.R | 2 README.md | 57 ++++-- build/partial.rdb |only build/vignette.rds |binary inst/doc/hf-disagg.Rmd | 2 inst/doc/hf-disagg.html | 360 +++++++++++++++++++++++++----------------- inst/doc/intro.Rmd | 2 inst/doc/intro.html | 387 ++++++++++++++++++++++++++++------------------ man/exports.m.Rd | 6 man/gdp.q.Rd | 4 man/spi.d.Rd | 4 man/td.Rd | 11 - man/tempdisagg-package.Rd | 2 tests/test-all.R | 17 +- vignettes/hf-disagg.Rmd | 2 vignettes/intro.Rmd | 2 20 files changed, 563 insertions(+), 376 deletions(-)
Title: Smooth and Tidy Spatial Features
Description: Tools for smoothing and tidying spatial features
(i.e. lines and polygons) to make them more aesthetically pleasing.
Smooth curves, fill holes, and remove small fragments from lines and
polygons.
Author: Matthew Strimas-Mackey [aut, cre]
Maintainer: Matthew Strimas-Mackey <mstrimas@gmail.com>
Diff between smoothr versions 1.0.0 dated 2023-01-09 and 1.0.1 dated 2023-03-09
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ inst/doc/smoothr.R | 6 +++--- inst/doc/smoothr.Rmd | 6 +++--- inst/doc/smoothr.html | 10 +++++----- vignettes/smoothr.Rmd | 6 +++--- 7 files changed, 28 insertions(+), 24 deletions(-)
Title: Value Added in Exports and Other Input-Output Table Analysis
Tools
Description: Analysis of trade in value added with international
input-output tables. Includes commands for easy data extraction,
matrix manipulation, decomposition of value added in gross exports and
calculation of value added indicators, with full geographical and
sector customization. Decomposition methods include Borin and Mancini
(2023) <doi:10.1080/09535314.2022.2153221>, Miroudot and Ye (2021)
<doi:10.1080/09535314.2020.1730308>, Wang et al. (2013)
<https://econpapers.repec.org/paper/nbrnberwo/19677.htm> and Koopman
et al. (2014) <doi:10.1257/aer.104.2.459>.
Author: Enrique Feas [aut, cre]
Maintainer: Enrique Feas <efeas@runbox.com>
Diff between exvatools versions 0.2.0 dated 2023-01-20 and 0.3.0 dated 2023-03-09
DESCRIPTION | 26 - MD5 | 38 +- NEWS.md | 12 R/get_exvadec_bkdown.R | 135 ++++++---- R/make_exvadec.R | 81 +++--- R/make_exvadec_bm_snk.R | 638 ++++++++++++++++++++---------------------------- R/make_exvadec_bm_src.R | 635 ++++++++++++++++++++++++----------------------- R/make_exvadec_my.R | 476 ++++++++++++++++++++--------------- R/make_exvadec_oecd.R | 326 ++++++++++-------------- R/make_exvadec_wwz.R | 406 +++++++++++------------------- R/make_exvadir.R | 46 +-- R/matrix_extract.R | 3 R/matrix_rep.R | 68 +++-- R/sysdata.rda |binary R/utils-text.R | 6 R/utils-validators.R | 35 +- inst/doc/exvatools.Rmd | 2 inst/doc/exvatools.html | 68 ++--- man/make_exvadec.Rd | 72 +++-- vignettes/exvatools.Rmd | 2 20 files changed, 1513 insertions(+), 1562 deletions(-)
Title: Connect to an OMOP Common Data Model
Description: Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.
Author: Adam Black [aut, cre] ,
Artem Gorbachev [aut],
Edward Burn [aut],
Marti Catala Sabate [aut]
Maintainer: Adam Black <black@ohdsi.org>
Diff between CDMConnector versions 0.4.1 dated 2023-01-24 and 0.5.0 dated 2023-03-09
CDMConnector-0.4.1/CDMConnector/R/date-functions.R |only CDMConnector-0.4.1/CDMConnector/R/dbConnectDetails.R |only CDMConnector-0.4.1/CDMConnector/R/generate.R |only CDMConnector-0.4.1/CDMConnector/R/optional_data.R |only CDMConnector-0.4.1/CDMConnector/R/readCohortSet.R |only CDMConnector-0.4.1/CDMConnector/inst/doc/DBI_connection_examples.R |only CDMConnector-0.4.1/CDMConnector/inst/doc/DBI_connection_examples.Rmd |only CDMConnector-0.4.1/CDMConnector/inst/doc/DBI_connection_examples.html |only CDMConnector-0.4.1/CDMConnector/inst/doc/SQL.R |only CDMConnector-0.4.1/CDMConnector/inst/doc/SQL.Rmd |only CDMConnector-0.4.1/CDMConnector/inst/doc/SQL.html |only CDMConnector-0.4.1/CDMConnector/inst/doc/cdm_reference_backends.R |only CDMConnector-0.4.1/CDMConnector/inst/doc/cdm_reference_backends.Rmd |only CDMConnector-0.4.1/CDMConnector/inst/doc/cdm_reference_backends.html |only CDMConnector-0.4.1/CDMConnector/inst/doc/dbplyr.R |only CDMConnector-0.4.1/CDMConnector/inst/doc/dbplyr.Rmd |only CDMConnector-0.4.1/CDMConnector/inst/doc/dbplyr.html |only CDMConnector-0.4.1/CDMConnector/inst/doc/getting-started.R |only CDMConnector-0.4.1/CDMConnector/inst/doc/getting-started.Rmd |only CDMConnector-0.4.1/CDMConnector/inst/doc/getting-started.html |only CDMConnector-0.4.1/CDMConnector/man/addCohortTable.Rd |only CDMConnector-0.4.1/CDMConnector/man/cdmFromCon.Rd |only CDMConnector-0.4.1/CDMConnector/man/cdmFromFiles.Rd |only CDMConnector-0.4.1/CDMConnector/man/dbConnect-dbConnectDetails-method.Rd |only CDMConnector-0.4.1/CDMConnector/man/dbConnectDetails-class.Rd |only CDMConnector-0.4.1/CDMConnector/man/dbConnectDetails.Rd |only CDMConnector-0.4.1/CDMConnector/man/download_optional_data.Rd |only CDMConnector-0.4.1/CDMConnector/man/extractLoadData.Rd |only CDMConnector-0.4.1/CDMConnector/tests/testthat/test-DBI.R |only CDMConnector-0.4.1/CDMConnector/tests/testthat/test-date-functions.R |only CDMConnector-0.4.1/CDMConnector/tests/testthat/test-dbConnectDetails.R |only CDMConnector-0.4.1/CDMConnector/tests/testthat/test-dplyr.R |only CDMConnector-0.4.1/CDMConnector/vignettes/DBI_connection_examples.Rmd |only CDMConnector-0.4.1/CDMConnector/vignettes/SQL.Rmd |only CDMConnector-0.4.1/CDMConnector/vignettes/cdm_reference_backends.Rmd |only CDMConnector-0.4.1/CDMConnector/vignettes/dbplyr.Rmd |only CDMConnector-0.4.1/CDMConnector/vignettes/getting-started.Rmd |only CDMConnector-0.5.0/CDMConnector/DESCRIPTION | 30 CDMConnector-0.5.0/CDMConnector/MD5 | 154 ++-- CDMConnector-0.5.0/CDMConnector/NAMESPACE | 29 CDMConnector-0.5.0/CDMConnector/NEWS.md | 23 CDMConnector-0.5.0/CDMConnector/R/CDMConnector-package.R | 3 CDMConnector-0.5.0/CDMConnector/R/Eunomia.R |only CDMConnector-0.5.0/CDMConnector/R/cdm.R | 350 +++++----- CDMConnector-0.5.0/CDMConnector/R/cdmSubset.R |only CDMConnector-0.5.0/CDMConnector/R/compute.R | 199 ++++- CDMConnector-0.5.0/CDMConnector/R/dateadd.R |only CDMConnector-0.5.0/CDMConnector/R/generateCohortSet.R |only CDMConnector-0.5.0/CDMConnector/R/listTables.R | 19 CDMConnector-0.5.0/CDMConnector/R/summarise_quantile.R |only CDMConnector-0.5.0/CDMConnector/R/sysdata.rda |binary CDMConnector-0.5.0/CDMConnector/R/utils.R | 20 CDMConnector-0.5.0/CDMConnector/R/validate.R | 2 CDMConnector-0.5.0/CDMConnector/README.md | 26 CDMConnector-0.5.0/CDMConnector/build/vignette.rds |binary CDMConnector-0.5.0/CDMConnector/inst/cohorts2/GIBleed_male.json |only CDMConnector-0.5.0/CDMConnector/inst/csv/OMOP_CDMv5.3_Table_Level.csv | 2 CDMConnector-0.5.0/CDMConnector/inst/csv/OMOP_CDMv5.4_Table_Level.csv | 2 CDMConnector-0.5.0/CDMConnector/inst/doc/a01_getting-started.R |only CDMConnector-0.5.0/CDMConnector/inst/doc/a01_getting-started.Rmd |only CDMConnector-0.5.0/CDMConnector/inst/doc/a01_getting-started.html |only CDMConnector-0.5.0/CDMConnector/inst/doc/a02_Working_with_cohorts.R |only CDMConnector-0.5.0/CDMConnector/inst/doc/a02_Working_with_cohorts.Rmd |only 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|only CDMConnector-0.5.0/CDMConnector/man/cdmName.Rd |only CDMConnector-0.5.0/CDMConnector/man/cdmSample.Rd |only CDMConnector-0.5.0/CDMConnector/man/cdmSubset.Rd |only CDMConnector-0.5.0/CDMConnector/man/cdmSubsetCohort.Rd |only CDMConnector-0.5.0/CDMConnector/man/cdm_from_con.Rd | 44 + CDMConnector-0.5.0/CDMConnector/man/cdm_from_files.Rd | 20 CDMConnector-0.5.0/CDMConnector/man/cohortAttrition.Rd |only CDMConnector-0.5.0/CDMConnector/man/cohortCount.Rd |only CDMConnector-0.5.0/CDMConnector/man/cohortSet.Rd |only CDMConnector-0.5.0/CDMConnector/man/computePermanent.Rd | 22 CDMConnector-0.5.0/CDMConnector/man/computeQuery.Rd | 20 CDMConnector-0.5.0/CDMConnector/man/dateadd.Rd | 2 CDMConnector-0.5.0/CDMConnector/man/datediff.Rd | 2 CDMConnector-0.5.0/CDMConnector/man/downloadEunomiaData.Rd | 2 CDMConnector-0.5.0/CDMConnector/man/dropTable.Rd |only CDMConnector-0.5.0/CDMConnector/man/eunomiaDir.Rd | 2 CDMConnector-0.5.0/CDMConnector/man/eunomia_dir.Rd | 2 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Title: Bayesian Additive Regression Trees for Confounder Selection
Description: Fit Bayesian Regression Additive Trees (BART) models to
select true confounders from a large set of potential confounders and
to estimate average treatment effect. For more information, see Kim et
al. (2023) <doi:10.1111/biom.13833>.
Author: Yeonghoon Yoo [aut, cre]
Maintainer: Yeonghoon Yoo <yooyh.stat@gmail.com>
Diff between bartcs versions 0.1.2 dated 2022-08-06 and 1.0.0 dated 2023-03-09
bartcs-0.1.2/bartcs/R/mbart.R |only bartcs-0.1.2/bartcs/R/sbart.R |only bartcs-0.1.2/bartcs/src/BartNode.h |only bartcs-0.1.2/bartcs/src/BartTree.cpp |only bartcs-0.1.2/bartcs/src/BartTree.h |only bartcs-0.1.2/bartcs/src/BartTree_change.cpp |only bartcs-0.1.2/bartcs/src/BartTree_drawLeafValue.cpp |only bartcs-0.1.2/bartcs/src/BartTree_grow.cpp |only bartcs-0.1.2/bartcs/src/BartTree_predict.cpp |only bartcs-0.1.2/bartcs/src/BartTree_prune.cpp |only bartcs-0.1.2/bartcs/src/BartTree_step.cpp |only bartcs-0.1.2/bartcs/src/BartTree_update.cpp |only bartcs-0.1.2/bartcs/src/fit_mbart.cpp |only bartcs-0.1.2/bartcs/src/fit_sbart.cpp |only bartcs-1.0.0/bartcs/DESCRIPTION | 20 bartcs-1.0.0/bartcs/MD5 | 90 - bartcs-1.0.0/bartcs/NAMESPACE | 28 bartcs-1.0.0/bartcs/NEWS.md | 40 bartcs-1.0.0/bartcs/R/RcppExports.R | 56 - bartcs-1.0.0/bartcs/R/bart.R | 334 +++--- bartcs-1.0.0/bartcs/R/bartcs-package.R | 74 - bartcs-1.0.0/bartcs/R/gelman_rubin.R | 136 +- bartcs-1.0.0/bartcs/R/ihdp.R | 86 - bartcs-1.0.0/bartcs/R/pip_plot.R | 6 bartcs-1.0.0/bartcs/R/plot.R | 161 +-- bartcs-1.0.0/bartcs/R/print.R | 3 bartcs-1.0.0/bartcs/R/separate_bart.R |only bartcs-1.0.0/bartcs/R/single_bart.R |only bartcs-1.0.0/bartcs/R/summary.R | 312 +++--- bartcs-1.0.0/bartcs/R/trace_plot.R | 10 bartcs-1.0.0/bartcs/R/utils.R | 19 bartcs-1.0.0/bartcs/README.md | 57 - bartcs-1.0.0/bartcs/build/partial.rdb |binary bartcs-1.0.0/bartcs/build/vignette.rds |binary bartcs-1.0.0/bartcs/inst/doc/bartcs.R | 147 +- bartcs-1.0.0/bartcs/inst/doc/bartcs.Rmd | 265 ++--- bartcs-1.0.0/bartcs/inst/doc/bartcs.html | 1088 ++++++++++----------- bartcs-1.0.0/bartcs/man/bart.Rd | 375 +++---- bartcs-1.0.0/bartcs/man/bartcs-package.Rd | 66 - bartcs-1.0.0/bartcs/man/count_omp_thread.Rd | 40 bartcs-1.0.0/bartcs/man/gelman_rubin.Rd | 72 - bartcs-1.0.0/bartcs/man/ihdp.Rd | 104 +- bartcs-1.0.0/bartcs/man/plot.bartcs.Rd | 147 +- bartcs-1.0.0/bartcs/man/summary.bartcs.Rd | 21 bartcs-1.0.0/bartcs/src/BART.cpp |only bartcs-1.0.0/bartcs/src/BART.h |only bartcs-1.0.0/bartcs/src/Models.cpp |only bartcs-1.0.0/bartcs/src/Models.h |only bartcs-1.0.0/bartcs/src/Node.cpp |only bartcs-1.0.0/bartcs/src/Node.h |only bartcs-1.0.0/bartcs/src/ProgressBar.h | 2 bartcs-1.0.0/bartcs/src/RcppExports.cpp | 95 - bartcs-1.0.0/bartcs/src/change.cpp |only bartcs-1.0.0/bartcs/src/grow.cpp |only bartcs-1.0.0/bartcs/src/prune.cpp |only bartcs-1.0.0/bartcs/src/separate_bart.cpp |only bartcs-1.0.0/bartcs/src/single_bart.cpp |only bartcs-1.0.0/bartcs/src/util.cpp |only bartcs-1.0.0/bartcs/src/util.h |only bartcs-1.0.0/bartcs/vignettes/article.pdf |only bartcs-1.0.0/bartcs/vignettes/bartcs.Rmd | 265 ++--- 61 files changed, 2116 insertions(+), 2003 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-09 0.1.2
Title: Rule- And Instance-Based Regression Modeling
Description: Regression modeling using rules with added instance-based
corrections.
Author: Max Kuhn [aut, cre],
Steve Weston [ctb],
Chris Keefer [ctb],
Nathan Coulter [ctb],
Ross Quinlan [aut] ,
Rulequest Research Pty Ltd. [cph]
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between Cubist versions 0.4.2 dated 2023-02-08 and 0.4.2.1 dated 2023-03-09
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/rules.c | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)