Title: Bivariate Zero-Inflated Count Models Using Copulas
Description: Maximum likelihood estimation of copula-based zero-inflated
(and non-inflated) Poisson and negative binomial count models. Supports Frank
and Gaussian copulas. Allows for mixed margins (e.g., one margin Poisson, the
other zero-inflated negative binomial), and several marginal link functions.
Built-in methods for publication-quality tables using 'texreg', post-estimation
diagnostics using 'DHARMa', and testing for marginal zero-modification
via <doi:10.1177/0962280217749991>. For information on copula regression for count data,
see Genest and Nešlehová (2007) <doi:10.1017/S0515036100014963> as well as
Nikoloulopoulos (2013) <doi:10.1007/978-3-642-35407-6_11>. For information on zero-inflated
count regression generally, see Lambert (1992) <https:www.jstor.org/stable/1269547?origin=crossref>. The author
acknowledges support by NSF DMS-1925119 and DMS-212324.
Author: John Niehaus [aut, cre]
Maintainer: John Niehaus <jniehaus2257@gmail.com>
Diff between bizicount versions 1.3.0 dated 2022-12-02 and 1.3.1 dated 2023-03-16
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 11 +++++++++++ R/bizicount-methods.R | 3 ++- R/zicreg-methods.R | 3 ++- man/extract.bizicount.Rd | 4 +++- man/extract.zicreg.Rd | 4 +++- 7 files changed, 30 insertions(+), 13 deletions(-)
Title: Group Iterative Multiple Model Estimation
Description: Data-driven approach for arriving at person-specific time series models. The method first identifies which relations replicate across the majority of individuals to detect signal from noise. These group-level relations are then used as a foundation for starting the search for person-specific (or individual-level) relations. See Gates & Molenaar (2012) <doi:10.1016/j.neuroimage.2012.06.026>.
Author: Stephanie Lane [aut, trl],
Kathleen Gates [aut, cre, ccp],
Zachary Fisher [aut],
Cara Arizmendi [aut],
Peter Molenaar [aut, ccp],
Edgar Merkle [ctb],
Michael Hallquist [ctb],
Hallie Pike [ctb],
Teague Henry [ctb],
Kelly Duffy [ctb],
Lan Luo [ctb],
Ad [...truncated...]
Maintainer: Kathleen M Gates <gateskm@email.unc.edu>
Diff between gimme versions 0.7-11 dated 2023-02-28 and 0.7-12 dated 2023-03-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/final.org.R | 4 +++- R/search.paths.ms.R | 2 +- inst/doc/gimme_vignette.html | 4 ++-- 5 files changed, 14 insertions(+), 12 deletions(-)
Title: Standardized Comparison of Workflows in Mass Spectrometry-Based
Bottom-Up Proteomics
Description: Useful functions to analyze proteomic workflows including
number of identifications, data completeness, missed cleavages,
quantitative and retention time precision etc. Various software
outputs are supported such as 'ProteomeDiscoverer', 'Spectronaut', 'DIA-NN'
and 'MaxQuant'.
Author: Oliver Kardell [aut, cre]
Maintainer: Oliver Kardell <Okdll@gmx.net>
Diff between mpwR versions 0.1.2 dated 2023-02-12 and 0.1.3 dated 2023-03-16
DESCRIPTION | 6 MD5 | 110 + NAMESPACE | 1 NEWS.md | 9 R/create_example.R | 22 R/get_CV_LFQ_pep.R | 14 R/get_CV_LFQ_pg.R | 10 R/get_CV_RT.R | 9 R/get_DC_Report.R | 18 R/get_ID_Report.R | 9 R/get_MC_Report.R | 18 R/get_Upset_list.R | 335 ++--- R/get_summary_Report.R | 4 R/prepare_mpwR.R | 15 R/utils_helpers.R | 2 R/utils_import.R | 18 R/utils_reports.R | 725 ++++++------ R/write_generic_template.R |only inst/doc/Workflow.html | 59 man/figures/README-plot-DC-stacked-barplot-1.png |binary man/figures/README-plot-DC-stacked-barplot-percentage-1.png |binary man/figures/README-plot-ID-boxplot-1.png |binary man/write_generic_template.Rd |only tests/testthat/test_CV.R | 54 tests/testthat/test_DC.R | 21 tests/testthat/test_ID.R | 17 tests/testthat/test_MC.R | 18 tests/testthat/test_Upset.R | 29 tests/testthat/test_summary.R | 20 tests/testthat/test_utils_import.R | 23 tests/testthat/test_utils_reports.R | 61 - vignettes/images |only 32 files changed, 1012 insertions(+), 615 deletions(-)
Title: Flexible Mixture Modeling
Description: A general framework for finite mixtures of regression
models using the EM algorithm is implemented. The E-step and all
data handling are provided, while the M-step can be supplied by the
user to easily define new models. Existing drivers implement
mixtures of standard linear models, generalized linear models and
model-based clustering.
Author: Bettina Gruen [aut, cre] ,
Friedrich Leisch [aut] ,
Deepayan Sarkar [ctb] ,
Frederic Mortier [ctb],
Nicolas Picard [ctb]
Maintainer: Bettina Gruen <Bettina.Gruen@R-project.org>
Diff between flexmix versions 2.3-18 dated 2022-06-07 and 2.3-19 dated 2023-03-16
DESCRIPTION | 6 ++--- MD5 | 20 +++++++++---------- R/lmmc.R | 18 ++++++++--------- build/vignette.rds |binary data/Mehta.RData |binary inst/CITATION | 40 +++++++++++++++------------------------ inst/NEWS.Rd | 7 ++++++ inst/doc/bootstrapping.pdf |binary inst/doc/flexmix-intro.pdf |binary inst/doc/mixture-regressions.pdf |binary inst/doc/regression-examples.pdf |binary 11 files changed, 45 insertions(+), 46 deletions(-)
Title: Create Codebooks from Data Frames
Description: Quickly and easily create codebooks (i.e. data dictionaries) directly from a data frame.
Author: Brad Cannell [aut, cre, cph]
Maintainer: Brad Cannell <brad.cannell@gmail.com>
Diff between codebookr versions 0.1.5 dated 2022-08-09 and 0.1.6 dated 2023-03-16
DESCRIPTION | 8 - MD5 | 18 +- NEWS.md | 6 R/cb_add_col_attributes.R | 149 +++++++++++++++++++- R/cb_summary_stats_to_ft.R | 8 - R/codebook.R | 12 + README.md | 311 ++++++++++++++++++++---------------------- man/cb_add_col_attributes.Rd | 150 +++++++++++++++++++- man/cb_summary_stats_to_ft.Rd | 8 - man/codebook.Rd | 12 + 10 files changed, 495 insertions(+), 187 deletions(-)
More information about textBoxPlacement at CRAN
Permanent link
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
fair-cut forest (Cortes (2021) <arXiv:2110:13402>),
robust random-cut forest (Guha, Mishra, Roy, Schrijvers (2016) <http://proceedings.mlr.press/v48/guha16.html>),
and customizable variations of them, for isolation-based outlier detection, clustered outlier detection,
distance or similarity approximation (Cortes (2019) <arXiv:1910.12362>),
isolation kernel calculation (Ting, Zhu, Zhou (2018) <doi:10.1145/3219819.3219990>),
and imputation of missing values (Cortes (2019) <arXiv:1911.06646>),
based on random or guided decision tree splitting, and providing different metrics for
scoring anomalies based on isolation depth or density (Cortes (2021) <arXiv:2111.11639>).
Provides simp [...truncated...]
Author: David Cortes [aut, cre, cph],
Thibaut Goetghebuer-Planchon [cph] ,
David Blackman [cph] ,
Sebastiano Vigna [cph] ,
NumPy Developers [cph] ,
SciPy Developers [cph] ,
Enthought Inc [cph] ,
Stephen Moshier [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.5.17 dated 2022-09-07 and 0.5.19-1 dated 2023-03-16
isotree-0.5.17/isotree/src/robinmap/LICENSE |only isotree-0.5.19-1/isotree/DESCRIPTION | 24 ++- isotree-0.5.19-1/isotree/LICENSE | 2 isotree-0.5.19-1/isotree/MD5 | 24 +-- isotree-0.5.19-1/isotree/build/vignette.rds |binary isotree-0.5.19-1/isotree/configure | 26 +-- isotree-0.5.19-1/isotree/configure.ac | 2 isotree-0.5.19-1/isotree/inst/COPYRIGHTS | 70 ++++++++++ isotree-0.5.19-1/isotree/inst/doc/An_Introduction_to_Isolation_Forests.html | 32 ++-- isotree-0.5.19-1/isotree/src/Makevars.win | 1 isotree-0.5.19-1/isotree/src/crit.h | 12 + isotree-0.5.19-1/isotree/src/digamma.h |only isotree-0.5.19-1/isotree/src/robinmap/include/tsl/robin_hash.h | 18 +- isotree-0.5.19-1/isotree/src/utils.h | 29 ---- 14 files changed, 153 insertions(+), 87 deletions(-)
Title: Correction Factors for Tree Plot Areas Intersected by Stand
Boundaries
Description: The German national forest inventory uses angle count sampling,
a sampling method first published as `Bitterlich, W.: Die Winkelzählmessung.
Allgemeine Forst- und Holzwirtschaftliche Zeitung, 58. Jahrg., Folge 11/12
vom Juni 1947` and extended by Grosenbaugh
(<https://academic.oup.com/jof/article-abstract/50/1/32/4684174>)
as probability proportional to size sampling.
When plots are located near stand boundaries, their sizes and hence
their probabilities need to be corrected.
Author: Andreas Dominik Cullmann [aut, cre],
Bernhard Boesch [ctb],
Christoph Fischer [ctb],
Gerald Kaendler [ctb]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between treePlotArea versions 1.3.1 dated 2022-11-19 and 1.4.0 dated 2023-03-16
DESCRIPTION | 10 +++--- MD5 | 30 +++++++++---------- NEWS.md | 10 ++++++ R/get_boundary_polygons.R | 9 ----- R/get_boundary_radius.R | 15 ++++----- R/get_correction_factors.R | 42 +++++++++++++++++++++++---- R/get_r_max.R | 4 +- R/tree2polygon.R | 5 +-- R/validate_data.R | 7 ++-- README.md | 4 +- inst/NEWS.rd | 12 +++++++ inst/doc/An_Introduction_to_treePlotArea.pdf |binary man/get_boundary_polygons.Rd | 7 ++-- man/get_boundary_radius.Rd | 8 ++--- man/get_correction_factors.Rd | 33 ++++++++++++++++++++- man/get_r_max.Rd | 4 +- 16 files changed, 140 insertions(+), 60 deletions(-)
Title: San Francisco International Airport Monthly Air Passengers
Description: Provides monthly statistics on the number of monthly air passengers at SFO airport such as operating airline, terminal, geo, etc.
Data source: San Francisco data portal (DataSF) <https://data.sfgov.org/Transportation/Air-Traffic-Passenger-Statistics/rkru-6vcg>.
Author: Rami Krispin [aut, cre]
Maintainer: Rami Krispin <rami.krispin@gmail.com>
Diff between sfo versions 0.1.1 dated 2021-03-06 and 0.1.2 dated 2023-03-16
DESCRIPTION | 8 MD5 | 39 NEWS.md | 5 R/data.R | 22 R/dataviz.R | 19 R/global_variables.R |only README.md | 166 +- build/vignette.rds |binary data/sfo_passengers.rda |binary data/sfo_stats.rda |binary inst/doc/v1_intro.Rmd | 28 inst/doc/v1_intro.html | 428 +----- inst/doc/v3_analyzing_landing.html | 2301 +------------------------------------ man/figures/landing_sankey.svg | 2 man/figures/manufacturer.svg | 2 man/figures/sankey.svg | 2 man/figures/total.svg | 2 man/sankey_ly.Rd | 20 man/sfo_passengers.Rd | 10 man/sfo_stats.Rd | 12 vignettes/v1_intro.Rmd | 28 21 files changed, 398 insertions(+), 2696 deletions(-)
Title: Log-Likelihood Functions for 'rxode2'
Description: Provides the log-likelihoods with gradients from 'stan'
(Carpenter et al (2015), <arXiv:1509.07164>) needed
for generalized log-likelihood estimation in 'nlmixr2'
(Fidler et al (2019) <doi:10.1002/psp4.12445>). This is
split of to reduce computational burden of recompiling 'rxode2'
(Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) which runs
the 'nlmixr2' models during estimation.
Author: Matthew L. Fidler [aut, cre]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2ll versions 2.0.9 dated 2022-09-29 and 2.0.10 dated 2023-03-16
rxode2ll-2.0.10/rxode2ll/DESCRIPTION | 14 +++++++------- rxode2ll-2.0.10/rxode2ll/MD5 | 18 +++++++++++------- rxode2ll-2.0.10/rxode2ll/NAMESPACE | 1 + rxode2ll-2.0.10/rxode2ll/NEWS.md | 4 ++++ rxode2ll-2.0.10/rxode2ll/R/llik.R | 1 + rxode2ll-2.0.10/rxode2ll/README.md | 14 +++++++++++--- rxode2ll-2.0.10/rxode2ll/cleanup |only rxode2ll-2.0.10/rxode2ll/cleanup.win |only rxode2ll-2.0.10/rxode2ll/configure |only rxode2ll-2.0.10/rxode2ll/configure.win |only rxode2ll-2.0.10/rxode2ll/inst/tools |only rxode2ll-2.0.10/rxode2ll/src/Makevars.in |only rxode2ll-2.0.9/rxode2ll/src/Makevars |only rxode2ll-2.0.9/rxode2ll/src/Makevars.win |only 14 files changed, 35 insertions(+), 17 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 0.17.0 dated 2023-03-01 and 0.17.1 dated 2023-03-16
renv-0.17.0/renv/R/read.R |only renv-0.17.0/renv/inst/repos/src/contrib/renv_0.17.0.tar.gz |only renv-0.17.1/renv/DESCRIPTION | 6 renv-0.17.1/renv/MD5 | 268 ++++++------- renv-0.17.1/renv/NAMESPACE | 5 renv-0.17.1/renv/NEWS.md | 37 + renv-0.17.1/renv/R/abi.R | 6 renv-0.17.1/renv/R/actions.R | 2 renv-0.17.1/renv/R/activate.R | 6 renv-0.17.1/renv/R/available-packages.R | 122 ++++- renv-0.17.1/renv/R/backports.R | 12 renv-0.17.1/renv/R/bind.R | 43 +- renv-0.17.1/renv/R/binding.R | 29 + renv-0.17.1/renv/R/bioconductor.R | 24 - renv-0.17.1/renv/R/cache.R | 12 renv-0.17.1/renv/R/cellar.R | 5 renv-0.17.1/renv/R/checkout.R | 2 renv-0.17.1/renv/R/ci.R | 4 renv-0.17.1/renv/R/clean.R | 4 renv-0.17.1/renv/R/config-defaults.R | 9 renv-0.17.1/renv/R/consent.R | 2 renv-0.17.1/renv/R/data_frame.R |only renv-0.17.1/renv/R/dcf.R | 10 renv-0.17.1/renv/R/deactivate.R | 2 renv-0.17.1/renv/R/dependencies.R | 29 - renv-0.17.1/renv/R/description.R | 7 renv-0.17.1/renv/R/diagnostics.R | 11 renv-0.17.1/renv/R/difftime.R | 17 renv-0.17.1/renv/R/dotty.R |only renv-0.17.1/renv/R/dynamic.R |only renv-0.17.1/renv/R/ensure.R | 2 renv-0.17.1/renv/R/envir.R | 5 renv-0.17.1/renv/R/envvars.R | 8 renv-0.17.1/renv/R/files.R | 15 renv-0.17.1/renv/R/graph.R | 2 renv-0.17.1/renv/R/hash.R | 6 renv-0.17.1/renv/R/history.R | 6 renv-0.17.1/renv/R/hydrate.R | 32 - renv-0.17.1/renv/R/imbue.R | 2 renv-0.17.1/renv/R/imports.R | 4 renv-0.17.1/renv/R/index.R | 62 ++- renv-0.17.1/renv/R/infrastructure.R | 3 renv-0.17.1/renv/R/init.R | 2 renv-0.17.1/renv/R/install.R | 28 - renv-0.17.1/renv/R/installed-packages.R | 15 renv-0.17.1/renv/R/isolate.R | 2 renv-0.17.1/renv/R/knitr.R | 6 renv-0.17.1/renv/R/libpaths.R | 21 - renv-0.17.1/renv/R/load.R | 83 +++- renv-0.17.1/renv/R/lock.R | 164 ++++--- renv-0.17.1/renv/R/lockfile-api.R | 16 renv-0.17.1/renv/R/lockfile.R | 8 renv-0.17.1/renv/R/log.R | 49 +- renv-0.17.1/renv/R/memoize.R | 9 renv-0.17.1/renv/R/migrate.R | 2 renv-0.17.1/renv/R/modify.R | 2 renv-0.17.1/renv/R/mran.R | 23 - renv-0.17.1/renv/R/new.R |only renv-0.17.1/renv/R/once.R | 22 - renv-0.17.1/renv/R/package.R | 13 renv-0.17.1/renv/R/packages.R | 11 renv-0.17.1/renv/R/parse.R | 1 renv-0.17.1/renv/R/patch.R | 2 renv-0.17.1/renv/R/path.R | 3 renv-0.17.1/renv/R/paths.R | 38 - renv-0.17.1/renv/R/platform.R | 1 renv-0.17.1/renv/R/pretty.R | 3 renv-0.17.1/renv/R/project.R | 69 +++ renv-0.17.1/renv/R/properties.R |only renv-0.17.1/renv/R/python.R | 9 renv-0.17.1/renv/R/r.R | 2 renv-0.17.1/renv/R/rebuild.R | 29 - renv-0.17.1/renv/R/record.R | 2 renv-0.17.1/renv/R/records.R | 16 renv-0.17.1/renv/R/remove.R | 6 renv-0.17.1/renv/R/repair.R | 2 renv-0.17.1/renv/R/repos.R | 40 - renv-0.17.1/renv/R/restore.R | 5 renv-0.17.1/renv/R/retrieve.R | 36 + renv-0.17.1/renv/R/sandbox.R | 70 ++- renv-0.17.1/renv/R/scaffold.R | 2 renv-0.17.1/renv/R/scope.R | 153 +++---- renv-0.17.1/renv/R/settings.R | 191 +++++++-- renv-0.17.1/renv/R/snapshot-auto.R | 51 -- renv-0.17.1/renv/R/snapshot.R | 65 +-- renv-0.17.1/renv/R/stack.R | 4 renv-0.17.1/renv/R/status.R | 61 ++ renv-0.17.1/renv/R/system.R | 5 renv-0.17.1/renv/R/task.R |only renv-0.17.1/renv/R/tests.R | 20 renv-0.17.1/renv/R/unload.R | 2 renv-0.17.1/renv/R/update.R | 13 renv-0.17.1/renv/R/updates.R | 14 renv-0.17.1/renv/R/upgrade.R | 4 renv-0.17.1/renv/R/use.R | 5 renv-0.17.1/renv/R/utils-format.R | 19 renv-0.17.1/renv/R/utils-map.R | 3 renv-0.17.1/renv/R/utils.R | 133 ++++-- renv-0.17.1/renv/R/virtualization.R |only renv-0.17.1/renv/R/warnings.R | 3 renv-0.17.1/renv/R/zzz.R | 35 - renv-0.17.1/renv/build/vignette.rds |binary renv-0.17.1/renv/inst/config.yml | 10 renv-0.17.1/renv/inst/doc/docker.Rmd | 2 renv-0.17.1/renv/inst/doc/docker.html | 4 renv-0.17.1/renv/inst/doc/faq.Rmd | 21 + renv-0.17.1/renv/inst/doc/faq.html | 23 + renv-0.17.1/renv/inst/doc/lockfile.html | 2 renv-0.17.1/renv/inst/doc/renv.Rmd | 2 renv-0.17.1/renv/inst/doc/renv.html | 8 renv-0.17.1/renv/inst/repos/src/contrib/PACKAGES | 4 renv-0.17.1/renv/inst/repos/src/contrib/PACKAGES.gz |binary renv-0.17.1/renv/inst/repos/src/contrib/PACKAGES.rds |binary renv-0.17.1/renv/inst/repos/src/contrib/renv_0.17.1.tar.gz |only renv-0.17.1/renv/man/config.Rd | 4 renv-0.17.1/renv/man/load.Rd | 4 renv-0.17.1/renv/man/settings.Rd | 23 + renv-0.17.1/renv/tests/testthat.R | 3 renv-0.17.1/renv/tests/testthat/helper-aaa.R | 10 renv-0.17.1/renv/tests/testthat/resources/box.R | 2 renv-0.17.1/renv/tests/testthat/resources/properties.txt | 3 renv-0.17.1/renv/tests/testthat/test-available-packages.R | 23 + renv-0.17.1/renv/tests/testthat/test-bootstrap.R | 8 renv-0.17.1/renv/tests/testthat/test-clean.R | 4 renv-0.17.1/renv/tests/testthat/test-dcf.R | 2 renv-0.17.1/renv/tests/testthat/test-dependencies.R | 4 renv-0.17.1/renv/tests/testthat/test-dotty.R |only renv-0.17.1/renv/tests/testthat/test-download.R | 10 renv-0.17.1/renv/tests/testthat/test-dynamic.R |only renv-0.17.1/renv/tests/testthat/test-global.R | 10 renv-0.17.1/renv/tests/testthat/test-index.R | 121 +++++ renv-0.17.1/renv/tests/testthat/test-init.R | 8 renv-0.17.1/renv/tests/testthat/test-lock.R | 121 +++-- renv-0.17.1/renv/tests/testthat/test-profile.R | 2 renv-0.17.1/renv/tests/testthat/test-properties.R | 6 renv-0.17.1/renv/tests/testthat/test-settings.R | 33 + renv-0.17.1/renv/tests/testthat/test-snapshot.R | 22 + renv-0.17.1/renv/tests/testthat/test-utils.R | 41 + renv-0.17.1/renv/vignettes/docker.Rmd | 2 renv-0.17.1/renv/vignettes/faq.Rmd | 21 + renv-0.17.1/renv/vignettes/renv.Rmd | 2 141 files changed, 1977 insertions(+), 1002 deletions(-)
Title: Ecological Restoration Planning
Description: Flexible framework for ecological restoration planning. It aims to identify priority areas for restoration efforts using optimization algorithms (based on Justeau-Allaire et al. 2021 <doi:10.1111/1365-2664.13803>). Priority areas can be identified by maximizing landscape indices, such as the effective mesh size (Jaeger 2000 <doi:10.1023/A:1008129329289>), or the integral index of connectivity (Pascual-Hortal & Saura 2006 <doi:10.1007/s10980-006-0013-z>). Additionally, constraints can be used to ensure that priority areas exhibit particular characteristics (e.g., ensure that particular places are not selected for restoration, ensure that priority areas form a single contiguous network). Furthermore, multiple near-optimal solutions can be generated to explore multiple options in restoration planning. The package leverages the 'Choco-solver' software to perform optimization using constraint programming (CP) techniques (<https://choco-solver.org/>).
Author: Dimitri Justeau-Allaire [aut, cre]
,
Jeffrey O Hanson [aut] ,
Ghislain Vieilledent [aut] ,
Philippe Vismara [aut],
Xavier Lorca [aut],
Philippe Birnbaum [aut]
Maintainer: Dimitri Justeau-Allaire <dimitri.justeau@gmail.com>
Diff between restoptr versions 1.0.4 dated 2023-01-30 and 1.0.5 dated 2023-03-16
DESCRIPTION | 6 +- MD5 | 22 ++++---- NEWS.md | 5 + R/restopt_solution.R | 2 README.md | 13 ++--- inst/CITATION | 16 +++--- inst/doc/case_study.html | 2 inst/doc/restoptr.html | 78 +++++++++++++++---------------- man/figures/README-habitat_data-1.png |binary man/figures/README-locked_out_data-1.png |binary man/figures/README-solution-1.png |binary tests/testthat/test_data.R | 2 12 files changed, 76 insertions(+), 70 deletions(-)
Title: Quantile-Based Predictors for Survival Outcome
Description: Select optimal quantile-based predictors for survival outcome,
to include the means to handle dichotomizing the quantiles,
mean-signal-intensity or other continuous markers, and to obtain
estimates for dichotomized predictors by Bootstrap-based bias
correction.
Author: Misung Yi [aut, cph] ,
Tingting Zhan [aut, cre, cph] ,
Inna Chervoneva [aut, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between Qindex versions 0.1.1 dated 2023-02-13 and 0.1.2 dated 2023-03-16
DESCRIPTION | 38 +++++++++++++++--------------- MD5 | 26 ++++++++++---------- NEWS.md | 2 + R/0info.R | 16 ++++++------ R/FRindex.R | 60 ++++++++++++++++++++++++++++++++++++----------- R/optQp.R | 5 ++- R/pkg_data_doc.R | 33 ++++++++++++++++---------- R/sampleQp.R | 63 +++++++++++++++++++++++++++++++++----------------- data/pkg_data.rda |binary man/FRindex.Rd | 31 +++++++++++++++++++----- man/Qindex-package.Rd | 15 ++++++----- man/celldata.Rd | 33 +++++++++++++++----------- man/eval_dichotom.Rd | 5 ++- man/sampleQp.Rd | 32 ++++++++++++------------- 14 files changed, 226 insertions(+), 133 deletions(-)
Title: Miscellaneous Utilities for Extreme Value Analysis
Description: Provides utility functions and objects for Extreme Value
Analysis. These include probability functions with their exact
derivatives w.r.t. the parameters that can be used for estimation
and inference, even with censored observations. The
transformations exchanging the two parameterizations of Peaks Over
Threshold (POT) models: Poisson-GP and Point-Process are also
provided with their derivatives.
Author: Yves Deville [cre, aut]
Maintainer: Yves Deville <deville.yves@alpestat.com>
Diff between nieve versions 0.1.1 dated 2022-12-06 and 0.1.2 dated 2023-03-16
ChangeLog |only DESCRIPTION | 6 - MD5 | 32 ++++----- NAMESPACE | 1 NEWS.md |only R/GEV.R | 141 ++++++++++++++++++++++----------------- R/GPD2.R | 184 +++++++++++++++++++++++++++++++++++++++++----------- R/exp1.R | 161 +++++++++++++++++++++++++++++++++++---------- R/nieve-package.R | 2 R/poisGP2PP.R | 2 build/partial.rdb |binary inst/doc/nieve.R | 2 inst/doc/nieve.Rnw | 26 +++---- inst/doc/nieve.pdf |binary man/Exp1.Rd | 39 +++++++---- man/GEV.Rd | 36 ++++++---- man/GPD2.Rd | 45 +++++++++--- vignettes/nieve.Rnw | 26 +++---- 18 files changed, 486 insertions(+), 217 deletions(-)
Title: Network Meta-Analysis using Frequentist Methods
Description: A comprehensive set of functions providing frequentist methods for network meta-analysis (Balduzzi et al., 2023) <doi:10.18637/jss.v106.i02> and supporting Schwarzer et al. (2015) <doi:10.1007/978-3-319-21416-0>, Chapter 8 "Network Meta-Analysis":
- frequentist network meta-analysis following Rücker (2012) <doi:10.1002/jrsm.1058>;
- additive network meta-analysis for combinations of treatments (Rücker et al., 2020) <doi:10.1002/bimj.201800167>;
- network meta-analysis of binary data using the Mantel-Haenszel or non-central hypergeometric distribution method (Efthimiou et al., 2019) <doi:10.1002/sim.8158>;
- rankograms and ranking of treatments by the Surface under the cumulative ranking curve (SUCRA) (Salanti et al., 2013) <doi:10.1016/j.jclinepi.2010.03.016>;
- ranking of treatments using P-scores (frequentist analogue of SUCRAs without resampling) according to Rücker & Schwarzer (2015) <doi:10.1186/s12874-015-0060-8>;
- split direct and i [...truncated...]
Author: Gerta Ruecker [aut] ,
Ulrike Krahn [aut],
Jochem Koenig [aut] ,
Orestis Efthimiou [aut] ,
Annabel Davies [aut] ,
Theodoros Papakonstantinou [aut]
,
Guido Schwarzer [aut, cre]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between netmeta versions 2.8-0 dated 2023-02-27 and 2.8-1 dated 2023-03-16
DESCRIPTION | 34 ++++++------ MD5 | 45 ++++++++-------- NEWS.md | 8 ++ R/forest.netsplit.R | 7 +- R/hatmatrix.R | 9 +-- R/netcontrib.R | 11 ++-- R/netimpact.R | 10 +++ R/netmeta-package.R | 132 +++++++++++++++++++++++++++++++++---------------- R/netmetabin.R | 2 R/netrank.R | 3 - R/netsplit.R | 2 R/nettable.R | 2 R/rankogram.R | 3 - inst |only man/forest.netsplit.Rd | 7 +- man/hatmatrix.Rd | 9 +-- man/netcontrib.Rd | 9 +-- man/netimpact.Rd | 10 +++ man/netmeta-package.Rd | 132 +++++++++++++++++++++++++++++++++---------------- man/netmetabin.Rd | 2 man/netrank.Rd | 3 - man/netsplit.Rd | 2 man/nettable.Rd | 2 man/rankogram.Rd | 3 - 24 files changed, 287 insertions(+), 160 deletions(-)
Title: Clean and Visualize Over Expression Results from
'ConsensusPathDB'
Description: Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms,
protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB'
from gene set over-expression analysis. Performs clustering of pathway based on similarity
of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA)
when up and down regulated genes are known. The methods are described in a paper currently
submitted by Orecchioni et al, 2020 in Nanoscale.
Author: Raghvendra Mall [aut, cre]
Maintainer: Raghvendra Mall <raghvendra5688@gmail.com>
Diff between func2vis versions 1.0-2 dated 2022-08-29 and 1.0-3 dated 2023-03-16
DESCRIPTION | 11 ++++++----- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/clean_pathways.R | 2 +- R/plot_go_terms.R | 3 ++- R/plot_pathways.R | 8 ++++++-- R/plot_pathways_stacked_barplot.R | 7 ++++--- man/plot_go_terms.Rd | 8 ++++++-- 8 files changed, 33 insertions(+), 22 deletions(-)
Title: A Tool to Downsize Large Analysis Projects for Testing
Description: Toggles the test and production versions of a large
data analysis project.
Author: William Michael Landau [aut, cph, cre]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between downsize versions 0.2.2 dated 2017-04-03 and 0.2.3 dated 2023-03-16
DESCRIPTION | 16 MD5 | 54 +-- build/vignette.rds |binary inst/doc/downsize.R | 18 - inst/doc/downsize.Rmd | 2 inst/doc/downsize.html | 525 ++++++++++++++++++++++++-------- man/arg_small.Rd | 1 man/check_args.Rd | 1 man/downsize.Rd | 14 man/downsize_error.Rd | 1 man/ds.Rd | 14 man/help_downsize.Rd | 1 man/make_small.Rd | 1 man/my_mode.Rd | 1 man/production_mode.Rd | 1 man/scale_down.Rd | 1 man/scale_up.Rd | 1 man/scaling.Rd | 1 man/should_downsize.Rd | 1 man/subset_dim.Rd | 1 man/subset_length.Rd | 1 man/subset_ncol.Rd | 1 man/subset_nrow.Rd | 1 man/subset_single_dim.Rd | 1 man/test_mode.Rd | 1 man/use_arg_small.Rd | 1 tests/testthat/test-subset_single_dim.R | 1 vignettes/downsize.Rmd | 2 28 files changed, 476 insertions(+), 188 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Mueller [aut, cre] ,
Antoine Fabri [ctb],
Darko Bergant [aut],
Katharina Brunner [ctb],
James Wondrasek [ctb],
Indrajeet Patil [ctb] ,
Maelle Salmon [ctb] ,
energie360° AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between dm versions 1.0.4 dated 2023-02-11 and 1.0.5 dated 2023-03-16
DESCRIPTION | 13 - MD5 | 189 +++++++++++++++---------- NEWS.md | 27 +++ R/bind.R | 4 R/dm_wrap.R | 24 ++- R/dplyr.R | 2 R/keys.R | 4 R/unique-keys.R | 2 inst/cheatsheet-template.html |only inst/cheatsheet.css |only inst/doc/dm.R | 2 inst/doc/dm.Rmd | 2 inst/doc/dm.html | 107 ++++++-------- inst/doc/howto-dm-copy.R | 1 inst/doc/howto-dm-copy.Rmd | 1 inst/doc/howto-dm-copy.html | 23 +-- inst/doc/howto-dm-db.R | 35 ++++ inst/doc/howto-dm-db.Rmd | 52 ++++++ inst/doc/howto-dm-db.html | 187 ++++++++++++++---------- inst/doc/howto-dm-df.html | 4 inst/doc/howto-dm-rows.R | 1 inst/doc/howto-dm-rows.Rmd | 1 inst/doc/howto-dm-rows.html | 31 +--- inst/doc/howto-dm-theory.R | 1 inst/doc/howto-dm-theory.Rmd | 1 inst/doc/howto-dm-theory.html | 27 +-- inst/doc/tech-dm-cdm.html | 4 inst/doc/tech-dm-class.html | 4 inst/doc/tech-dm-draw.html | 4 inst/doc/tech-dm-filter.R | 5 inst/doc/tech-dm-filter.Rmd | 5 inst/doc/tech-dm-filter.html | 13 - inst/doc/tech-dm-join.R | 2 inst/doc/tech-dm-join.Rmd | 2 inst/doc/tech-dm-join.html | 7 inst/doc/tech-dm-keyed.R | 2 inst/doc/tech-dm-keyed.Rmd | 2 inst/doc/tech-dm-keyed.html | 2 inst/doc/tech-dm-low-level.R | 3 inst/doc/tech-dm-low-level.Rmd | 3 inst/doc/tech-dm-low-level.html | 9 - inst/doc/tech-dm-zoom.R | 2 inst/doc/tech-dm-zoom.Rmd | 2 inst/doc/tech-dm-zoom.html | 2 inst/make-cheatsheet.R |only man/dm_unwrap_tbl.Rd | 6 man/dm_wrap_tbl.Rd | 6 tests/testthat/_snaps/deconstruct.md | 48 +++--- tests/testthat/_snaps/df/flatten.md | 170 ++++++++++++++++++++++ tests/testthat/_snaps/duckdb/flatten.md | 154 +++++++++++++++----- tests/testthat/_snaps/duckdb/table-surgery.md | 11 - tests/testthat/_snaps/maria/flatten.md | 24 +-- tests/testthat/_snaps/mssql/flatten.md | 24 +-- tests/testthat/_snaps/postgres/flatten.md | 24 +-- tests/testthat/_snaps/sqlite/flatten.md | 24 +-- tests/testthat/helper-jsonlite.R |only tests/testthat/helper-src.R | 7 tests/testthat/test-bind.R | 2 tests/testthat/test-db-interface.R | 6 tests/testthat/test-deconstruct.R | 42 ++--- tests/testthat/test-dm.R | 1 tests/testthat/test-dplyr.R | 18 +- tests/testthat/test-flatten.R | 58 +------ vignettes/articles |only vignettes/dm.Rmd | 2 vignettes/flights_dm_w_many_keys_and_color.svg | 20 +- vignettes/howto-dm-copy.Rmd | 1 vignettes/howto-dm-db.Rmd | 52 ++++++ vignettes/howto-dm-rows.Rmd | 1 vignettes/howto-dm-theory.Rmd | 1 vignettes/setup/setup.R | 3 vignettes/tech-dm-filter.Rmd | 5 vignettes/tech-dm-join.Rmd | 2 vignettes/tech-dm-keyed.Rmd | 2 vignettes/tech-dm-low-level.Rmd | 3 vignettes/tech-dm-zoom.Rmd | 2 76 files changed, 999 insertions(+), 534 deletions(-)
Title: Bridge to System Package Manager
Description: Enables binary package installations on Linux distributions.
Provides functions to manage packages via the distribution's package
manager. Also provides transparent integration with R's install.packages()
and a fallback mechanism. When installed as a system package, interacts
with the system's package manager without requiring administrative
privileges via an integrated D-Bus service; otherwise, uses sudo.
Currently, the following backends are supported: DNF, APT, ALPM.
Author: Inaki Ucar [aut, cph, cre]
Maintainer: Inaki Ucar <iucar@fedoraproject.org>
Diff between bspm versions 0.5.0 dated 2023-02-19 and 0.5.1 dated 2023-03-16
DESCRIPTION | 6 +- MD5 | 23 +++++---- NEWS.md | 5 ++ R/integration.R | 91 ++++++++++++++++++------------------- R/scripts.R | 11 +++- R/utils.R | 5 +- README.md | 1 inst/tinytest/db.rds |binary inst/tinytest/setup.R |only inst/tinytest/teardown.R |only inst/tinytest/test_integration.R | 95 ++++++++++++++++++++++++++++++++++++--- inst/tinytest/test_manager.R | 21 ++------ inst/tinytest/test_scripts.R |only inst/tinytest/test_utils.R |only tests/r2u.sh |only 15 files changed, 177 insertions(+), 81 deletions(-)
Title: Flexible Time-to-Event Figures
Description: Ease the creation of time-to-event (i.e. survival) endpoint
figures. The modular functions create figures ready for publication.
Each of the functions that add to or modify the figure are written as
proper 'ggplot2' geoms or stat methods, allowing the functions from
this package to be combined with any function or customization from
'ggplot2' and other 'ggplot2' extension packages.
Author: Daniel D. Sjoberg [aut, cre, cph]
,
Mark Baillie [aut],
Steven Haesendonckx [aut] ,
Tim Treis [aut]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between ggsurvfit versions 0.2.1 dated 2022-12-06 and 0.3.0 dated 2023-03-16
DESCRIPTION | 8 MD5 | 108 - NEWS.md | 8 R/add_pvalue.R | 7 R/add_risktable.R | 61 R/data.R | 2 R/ggcuminc.R | 2 R/ggsurvfit.R | 2 R/survfit2.R | 267 +-- R/theme_risktable.R | 128 - R/tidy_survfit.R | 665 ++++---- R/utils-add_risktable.R | 706 ++++---- R/utils.R | 16 inst/WORDLIST | 3 inst/doc/themes.html | 6 man/add_risktable.Rd | 42 man/adtte.Rd | 2 man/figures/README-unnamed-chunk-2-1.png |binary man/ggcuminc.Rd | 2 man/ggsurvfit.Rd | 2 man/survfit2.Rd | 3 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/add_pvalue/cuminc2-pvalue.svg | 396 ++-- tests/testthat/_snaps/add_risktable/add-risktable-overall1.svg | 218 +- tests/testthat/_snaps/add_risktable/add-risktable-overall2.svg | 304 +-- tests/testthat/_snaps/add_risktable/add-risktable-weights.svg | 226 +- tests/testthat/_snaps/add_risktable/cuminc1-risktable-all-outcomes.svg | 258 +-- tests/testthat/_snaps/add_risktable/cuminc1-risktable.svg | 240 +- tests/testthat/_snaps/add_risktable/cuminc2-risktable-all-outcomes.svg | 388 ++-- tests/testthat/_snaps/add_risktable/cuminc2-risktable.svg | 370 ++-- tests/testthat/_snaps/add_risktable/cuminc3-risktable-all-outcomes.svg | 542 +++--- tests/testthat/_snaps/add_risktable/cuminc3-risktable.svg | 516 +++--- tests/testthat/_snaps/add_risktable/sf1-risktable-custom-stats-and-label.svg |only tests/testthat/_snaps/add_risktable/sf1-risktable-custom-stats-and-label2.svg |only tests/testthat/_snaps/add_risktable/sf1-risktable-height.svg | 108 - tests/testthat/_snaps/add_risktable/sf1-risktable.svg | 226 +- tests/testthat/_snaps/add_risktable/sf2-risktable-custom-stats-and-label.svg |only tests/testthat/_snaps/add_risktable/sf2-risktable-custom-stats-and-label2.svg |only tests/testthat/_snaps/add_risktable/sf2-risktable.svg | 348 ++-- tests/testthat/_snaps/add_risktable/sf3-risktable-custom-stats-and-label.svg |only tests/testthat/_snaps/add_risktable/sf3-risktable-custom-stats-and-label2.svg |only tests/testthat/_snaps/add_risktable/sf3-risktable.svg | 504 +++--- tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-circle.svg | 364 ++-- tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-default.svg | 364 ++-- tests/testthat/_snaps/add_risktable_strata_symbol/add-risktable-strata-symbol-uni.svg | 218 +- tests/testthat/_snaps/ggsurvfit/sf2-ggsurvfit-new-data-geom1.svg | 818 +++++----- tests/testthat/_snaps/ggsurvfit/sf2-ggsurvfit-new-data-geom2.svg | 818 +++++----- tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-boxed-symbol.svg | 308 +-- tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-boxed.svg | 228 +- tests/testthat/_snaps/theme_risktable/sf1-ggsurvfit-theme-risktable-default.svg | 226 +- tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-boxed-symbol.svg | 352 ++-- tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-boxed.svg | 352 ++-- tests/testthat/_snaps/theme_risktable/sf2-ggsurvfit-theme-risktable-default.svg | 348 ++-- tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-boxed-symbol.svg | 508 +++--- tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-boxed.svg | 508 +++--- tests/testthat/_snaps/theme_risktable/sf3-ggsurvfit-theme-risktable-default.svg | 504 +++--- tests/testthat/test-add_risktable.R | 86 + tests/testthat/test-tidy_survfit.R | 353 ++-- 58 files changed, 6621 insertions(+), 6418 deletions(-)
Title: Oblique Decision Random Forest for Classification and Regression
Description: The oblique decision tree (ODT) uses linear combinations of
predictors as partitioning variables in a decision tree. Oblique
Decision Random Forest (ODRF) is an ensemble of multiple ODTs
generated by feature bagging. Both can be used for classification and
regression as supplements to the classical CART of Breiman (1984)
<https://imsarchives.nus.edu.sg/oldwww/Programs/014swclass/files/mark.pdf>
and Random Forest of Breiman (2001) <DOI:10.1023/A:1010933404324>
respectively.
Author: Yu Liu [aut, cre, cph],
Yingcun Xia [aut]
Maintainer: Yu Liu <liuyuchina123@gmail.com>
Diff between ODRF versions 0.0.2 dated 2023-02-28 and 0.0.3 dated 2023-03-16
DESCRIPTION | 6 +- MD5 | 46 ++++++++-------- NEWS.md | 7 ++ R/Accuracy.R | 4 - R/ODRF.R | 5 + R/ODT.R | 18 +++++- R/RotMat.R | 12 ++-- R/VarImp.R | 74 ++++++++++++++++----------- R/as_party_ODT.R | 6 +- R/plot_Accuracy.R | 15 ++++- R/plot_ODT.R | 29 ++++++---- R/plot_ODT_depth.R | 10 +++ R/plot_VarImp.R | 25 +++++---- R/plot_prune_ODT.R | 24 ++++++-- R/predict_ODRF.R | 21 ++++--- R/predict_ODT.R | 19 +++++- inst/WORDLIST | 1 inst/doc/Oblique-Decision-Random-Forest.html | 10 +-- man/ODRF.Rd | 2 man/ODT.Rd | 8 ++ man/RotMatMake.Rd | 12 ++-- man/VarImp.Rd | 13 ++-- man/plot.VarImp.Rd | 12 +--- tests/testthat/test-ODT.R | 4 - 24 files changed, 241 insertions(+), 142 deletions(-)
Title: Distance Measure Based Judgment and Learning
Description: Implements various decision support tools related to the Econometrics & Technometrics.
Subroutines include correlation reliability test, Mahalanobis distance measure for outlier detection, combinatorial search (all possible subset regression), non-parametric efficiency analysis measures: DDF (directional distance function), DEA (data envelopment analysis), HDF (hyperbolic distance function), SBM (slack-based measure), and SF (shortage function), benchmarking, Malmquist productivity analysis, risk analysis, technology adoption model, new product target setting, network DEA, dynamic DEA, intertemporal budgeting, etc.
Author: Dong-Joon Lim, Ph.D. <technometrics.org>
Maintainer: Dong-Joon Lim <tgno3.com@gmail.com>
Diff between DJL versions 3.8 dated 2022-03-16 and 3.9 dated 2023-03-16
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 8 ++++++++ R/dm.network.dea.R | 2 +- 4 files changed, 16 insertions(+), 8 deletions(-)
Title: Quick Table Generation & Exploratory Analyses on ADaM-Ish
Datasets
Description: Provides users a quick exploratory dive into common
visualizations without writing a single line of code given the users
data follows the Analysis Data Model (ADaM) standards put forth by the
Clinical Data Interchange Standards Consortium (CDISC)
<https://www.cdisc.org>. Prominent modules/ features of the
application are the Table Generator, Population Explorer, and the
Individual Explorer. The Table Generator allows users to drag and drop
variables and desired statistics (frequencies, means, ANOVA, t-test,
and other summary statistics) into bins that automagically create
stunning tables with validated information. The Population Explorer
offers various plots to visualize general trends in the population
from various vantage points. Plot modules currently include scatter
plot, spaghetti plot, box plot, histogram, means plot, and bar plot.
Each plot type allows the user to plot uploaded variables against one
another, and dissect the population by filtering out certain subjects.
La [...truncated...]
Author: Aaron Clark [aut, cre] ,
Jeff Thompson [aut],
Teresa Wilson [aut],
Nate Mockler [ccp, led],
Maya Gans [aut],
Robert Krajcik [ctb],
Marly Gotti [ctb],
Biogen Inc [cph]
Maintainer: Aaron Clark <clark.aaronchris@gmail.com>
Diff between tidyCDISC versions 0.2.0 dated 2023-02-03 and 0.2.1 dated 2023-03-16
DESCRIPTION | 11 MD5 | 82 +++-- NEWS.md | 27 + R/global.R | 6 R/mod_dataComply_fct_helpers.R | 3 R/mod_indvExpPat.R | 2 R/mod_indvExpPatEvents.R | 42 +-- R/mod_indvExpPatVisits.R | 9 R/mod_indvExpPatVisits_fct_plot.R | 12 R/mod_indvExp_fct_buildEvents.R | 15 - R/mod_indvExp_fct_organizeEvent.R | 19 + R/mod_indvExp_ui.R | 4 R/mod_popExp.R | 24 + R/mod_popExp_fct_boxplot.R | 8 R/mod_popExp_fct_km.R | 2 R/mod_popExp_fct_line.R | 58 ++-- R/mod_popExp_fct_scatterplot.R | 308 ++++++++++++++-------- R/mod_popExp_fct_spaghettiplot.R | 12 R/mod_popExp_heatCorr.R | 9 R/mod_popExp_scatter.R | 48 ++- R/mod_popExp_ui.R | 17 - R/mod_tableGen.R | 66 +--- R/mod_tableGen_fct_blocks.R | 2 R/mod_tableGen_fct_freq.R | 2 R/mod_tableGen_fct_max_freq.R | 2 R/mod_tableGen_fct_nested_freq.R | 4 R/mod_tableGen_fct_non_missing.R | 2 R/mod_tableGen_fct_y.R | 2 R/mod_tableGen_utils.R | 35 ++ R/utils_helpers.R | 38 ++ R/utils_strObjs.R | 10 README.md | 43 ++- inst/WORDLIST | 11 inst/app/www/recipe.js | 8 inst/app/www/script.js | 2 inst/app/www/styles.css | 2 inst/app/www/timevis.css |only man/figures/blog-word-cloud.jpg |only man/figures/news.png |only man/figures/youtube.png |only man/tg_gt.Rd | 4 tests/spelling.R | 4 tests/testthat/test-mod_indvExp_fct_buildEvents.R | 8 tests/testthat/test-popExp_fct_scatterplot.R | 2 44 files changed, 628 insertions(+), 337 deletions(-)
Title: Hierarchical Graph Clustering for a Collection of Networks
Description: Graph clustering using an agglomerative algorithm to maximize the
integrated classification likelihood criterion and a mixture of stochastic
block models. The method is described in the article "Model-based graph
clustering of a collection of networks using an agglomerative algorithm" by
T. Rebafka (2022) <arXiv:2211.02314>.
Author: Tabea Rebafka [aut, cre]
Maintainer: Tabea Rebafka <tabea.rebafka@sorbonne-universite.fr>
Diff between graphclust versions 1.0.1 dated 2023-01-12 and 1.0.2 dated 2023-03-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/graphonSpectralClustering.R | 8 +++++--- man/graphonSpectralClustering.Rd | 9 ++++++++- 4 files changed, 19 insertions(+), 10 deletions(-)
Title: Modern Classes for Tracking and Movement Data
Description: Modern classes for tracking and movement data, building
on 'sf' spatial infrastructure, and early theoretical work from
Turchin (1998, ISBN: 9780878938476), and Calenge et al. (2009)
<doi:10.1016/j.ecoinf.2008.10.002>. Tracking data are series of
locations with at least 2-dimensional spatial coordinates (x,y), a
time index (t), and individual identification (id) of the object
being monitored; movement data are made of trajectories, i.e. the
line representation of the path, composed by steps (the
straight-line segments connecting successive locations). 'sftrack'
is designed to handle movement of both living organisms and
inanimate objects.
Author: Matthew Boone [aut] ,
Rocio Joo [aut] ,
Emiel Van Loon [ctb] ,
Mathieu Basille [aut, cre]
Maintainer: Mathieu Basille <mathieu@basille.org>
Diff between sftrack versions 0.5.3 dated 2021-07-01 and 0.5.4 dated 2023-03-16
DESCRIPTION | 10 MD5 | 63 ++--- NEWS.md | 5 R/misc_util.R | 2 R/sftrack.R | 4 R/sftraj.R | 4 R/step_calculation.R | 2 README.md | 134 ++++++------ TODO |only build/vignette.rds |binary inst/CITATION | 39 ++- inst/doc/sftrack1_overview.R | 2 inst/doc/sftrack1_overview.Rmd | 2 inst/doc/sftrack1_overview.html | 215 +++++++++++++++++++ inst/doc/sftrack2_reading.R | 50 ++-- inst/doc/sftrack2_reading.Rmd | 69 +++--- inst/doc/sftrack2_reading.html | 387 +++++++++++++++++++++++++++-------- inst/doc/sftrack3_workingwith.R | 38 +-- inst/doc/sftrack3_workingwith.Rmd | 44 ++-- inst/doc/sftrack3_workingwith.html | 398 ++++++++++++++++++++++++++++--------- inst/doc/sftrack4_groups.R | 55 ++--- inst/doc/sftrack4_groups.Rmd | 55 ++--- inst/doc/sftrack4_groups.html | 345 ++++++++++++++++++++++++++------ inst/doc/sftrack5_spatial.R | 54 ++--- inst/doc/sftrack5_spatial.Rmd | 61 ++--- inst/doc/sftrack5_spatial.html | 387 +++++++++++++++++++++++++++-------- man/as_sftrack.Rd | 2 man/as_sftraj.Rd | 2 vignettes/sftrack1_overview.Rmd | 2 vignettes/sftrack2_reading.Rmd | 69 +++--- vignettes/sftrack3_workingwith.Rmd | 44 ++-- vignettes/sftrack4_groups.Rmd | 55 ++--- vignettes/sftrack5_spatial.Rmd | 61 ++--- 33 files changed, 1874 insertions(+), 786 deletions(-)
Title: Lightweight Utilities for 'DIZ' R Package Development
Description: Lightweight utility functions used for the R package
development infrastructure inside the data integration centers ('DIZ')
to standardize and facilitate repetitive tasks such as setting up a
database connection or issuing notification messages and to avoid
redundancy.
Author: Jonathan M. Mang [aut, cre] ,
Lorenz A. Kapsner [aut] ,
MIRACUM - Medical Informatics in Research and Care in University
Medicine [fnd],
Universitaetsklinikum Erlangen, Germany [cph]
Maintainer: Jonathan M. Mang <jonathan.mang@uk-erlangen.de>
Diff between DIZtools versions 0.0.7 dated 2023-01-23 and 0.0.8 dated 2023-03-16
DESCRIPTION | 12 +++--- MD5 | 67 ++++++++++++++++++---------------- NAMESPACE | 3 + R/assign_to_R_env.R | 2 - R/check_if_unique_rows.R | 2 - R/clean_path_name.R | 2 - R/clear.R | 2 - R/close_all_connections.R | 2 - R/dot_helper.R | 2 - R/equals2.R | 2 - R/feedback.R | 2 - R/file_lines_to_list.R |only R/firstup.R | 2 - R/format_POSIXct.R | 2 - R/get_config.R | 2 - R/get_current_timestamp.R | 13 +----- R/is.empty.R | 2 - R/is_date_format.R | 2 - R/notin.R | 2 - R/number_to_position.R | 2 - R/paste2.R | 2 - R/pretty_timestamp.R |only R/rep2.R | 2 - R/robust_round.R | 2 - R/setdiff_all.R | 2 - R/setenv2.R | 2 - R/setenv_file.R | 2 - R/string_replacements.R | 2 - R/time_diff_print.R |only R/trim.space.R | 2 - R/vgsub.R | 2 - R/zzz.R | 2 - man/file_lines_to_list.Rd |only man/pretty_timestamp.Rd |only man/time_diff_print.Rd |only tests/testthat/test-feedback.R | 2 - tests/testthat/test-lints.R | 2 - tests/testthat/test-time_diff_print.R |only 38 files changed, 76 insertions(+), 73 deletions(-)
Title: R Bindings for the 'prql-compiler' Rust Library
Description: Provides a function to convert 'PRQL' strings to 'SQL' strings.
Combined with other R functions that take 'SQL' as an argument,
'PRQL' can be used on R.
Author: Tatsuya Shima [aut, cre]
Maintainer: Tatsuya Shima <ts1s1andn@gmail.com>
Diff between prqlr versions 0.2.1 dated 2023-02-28 and 0.3.0 dated 2023-03-16
DESCRIPTION | 8 LICENSE.note | 124 +++------- MD5 | 47 ++-- NAMESPACE | 1 NEWS.md | 19 + R/compile.R | 20 - R/knitr-engine.R | 8 README.md | 23 + inst/doc/knitr.R | 90 +++++++ inst/doc/knitr.Rmd | 111 +++++++++ inst/doc/knitr.html | 92 +++++++ inst/doc/prqlr.html | 2 man/prql_compile.Rd | 17 - src/rust/Cargo.lock | 364 ++++++++++--------------------- src/rust/Cargo.toml | 6 src/rust/src/lib.rs | 40 ++- tests/testthat/_snaps/compile.md | 121 ++++++++-- tests/testthat/_snaps/knitr-engine.md | 89 +++++++ tests/testthat/files/change-lang.Rmd |only tests/testthat/files/glue.Rmd |only tests/testthat/files/r-style-opts.Rmd | 5 tests/testthat/files/set-db.R |only tests/testthat/files/yaml-style-opts.Rmd | 5 tests/testthat/test-compile.R | 15 + tests/testthat/test-knitr-engine.R | 2 vignettes/knitr.Rmd | 111 +++++++++ 26 files changed, 874 insertions(+), 446 deletions(-)
More information about PlotBivInvGaus at CRAN
Permanent link
Title: Penalized Meta-Analysis
Description: Conduct penalized meta-analysis, see Van Lissa, Van Erp, & Clapper
(2023) <doi:10.31234/osf.io/6phs5>. In meta-analysis, there are
often between-study differences. These can be coded as moderator variables,
and controlled for using meta-regression. However, if the number of
moderators is large relative to the number of studies, such an analysis may
be overfit. Penalized meta-regression is useful in these cases, because
it shrinks the regression slopes of irrelevant moderators towards zero.
Author: Caspar J van Lissa [aut, cre] ,
Sara J van Erp [aut]
Maintainer: Caspar J van Lissa <c.j.vanlissa@tilburguniversity.edu>
Diff between pema versions 0.1.2 dated 2022-07-17 and 0.1.3 dated 2023-03-16
DESCRIPTION | 12 MD5 | 55 NAMESPACE | 4 R/brma.R | 911 +++++------ R/pema-package.R | 45 R/plot_prior.R | 2 R/plot_sensitivity.R |only R/pma_wrappers.R |only README.md | 39 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 23 inst/doc/using-brma.html | 124 - man/brma.Rd | 16 man/pema-package.Rd | 5 man/plot_sensitivity.Rd |only man/sample_prior.Rd | 2 src/Makevars | 4 src/Makevars.win | 4 src/stanExports_horseshoe_MA.h | 2162 +++++++++++++++----------- src/stanExports_horseshoe_MA_ml.h | 2599 ++++++++++++++++++-------------- src/stanExports_horseshoe_MA_ml_noint.h | 2565 +++++++++++++++++-------------- src/stanExports_horseshoe_MA_noint.h | 2071 ++++++++++++++----------- src/stanExports_hs_prior.h | 986 ++++++------ src/stanExports_lasso_MA.h | 1701 +++++++++++--------- src/stanExports_lasso_MA_ml.h | 2260 +++++++++++++++------------ src/stanExports_lasso_MA_ml_noint.h | 2169 +++++++++++++++----------- src/stanExports_lasso_MA_noint.h | 1610 +++++++++++-------- src/stanExports_lasso_prior.h | 639 ++++--- src/stanExports_prior_meff.h | 988 +++++++----- 30 files changed, 11899 insertions(+), 9097 deletions(-)
More information about DNAmixturesLite at CRAN
Permanent link
Title: Comparing Single Cases to Small Samples
Description: When comparing single cases to control populations and no parameters are known researchers and clinicians must estimate these with a control sample. This is often done when testing a case's abnormality on some variable or testing abnormality of the discrepancy between two variables. Appropriate frequentist and Bayesian methods for doing this are here implemented, including tests allowing for the inclusion of covariates. These have been developed first and foremost by John Crawford and Paul Garthwaite, e.g. in Crawford and Howell (1998) <doi:10.1076/clin.12.4.482.7241>, Crawford and Garthwaite (2005) <doi:10.1037/0894-4105.19.3.318>, Crawford and Garthwaite (2007) <doi:10.1080/02643290701290146> and Crawford, Garthwaite and Ryan (2011) <doi:10.1016/j.cortex.2011.02.017>. The package is also equipped with power calculators for each method.
Author: Jonathan Rittmo [aut, cre] ,
Robert McIntosh [aut]
Maintainer: Jonathan Rittmo <j.rittmo@gmail.com>
Diff between singcar versions 0.1.3 dated 2021-03-01 and 0.1.5 dated 2023-03-16
DESCRIPTION | 11 MD5 | 37 NAMESPACE | 1 NEWS.md | 9 R/BSDT.R | 6 R/BSDT_cov.R | 7 R/BTD.R | 3 R/BTD_cov.R | 7 R/MTD.R |only R/RSDT.R | 5 R/TD.R | 3 R/UDT.R | 6 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/doc/singcar_vignette.R | 230 ++- inst/doc/singcar_vignette.Rmd | 2326 +++++++++++++++++++++------------- inst/doc/singcar_vignette.html | 2789 ++++++++++++++++++++++++++--------------- man/MTD.Rd |only vignettes/ref.bib | 1113 +++++++++++----- vignettes/singcar_vignette.Rmd | 2326 +++++++++++++++++++++------------- 21 files changed, 5734 insertions(+), 3145 deletions(-)
Title: Reddit Data Extraction Toolkit
Description: A collection of tools for extracting structured data from <https://www.reddit.com/>.
Author: Ivan Rivera <ivan.s.rivera@gmail.com>
Maintainer: Ivan Rivera <ivan.s.rivera@gmail.com>
Diff between RedditExtractoR versions 3.0.7 dated 2023-02-05 and 3.0.8 dated 2023-03-16
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 3 +++ R/get_user_content.R | 13 ++++++++----- 4 files changed, 19 insertions(+), 13 deletions(-)
More information about RedditExtractoR at CRAN
Permanent link
Title: Fuzzy Inference System Design and Optimization
Description: Fuzzy inference systems are based on fuzzy rules, which have a good capability for managing progressive phenomenons.
This package is a basic implementation of the main functions to use a Fuzzy Inference System (FIS) provided by the open source software 'FisPro' <https://www.fispro.org>.
'FisPro' allows to create fuzzy inference systems and to use them for reasoning purposes, especially for simulating a physical or biological system.
Author: Serge Guillaume [aut],
Brigitte Charnomordic [aut],
Jean-Luc Lablee [aut, cre],
Hazael Jones [ctb],
Lydie Desperben [ctb],
INRAE [cph]
Maintainer: Jean-Luc Lablee <jean-luc.lablee@inrae.fr>
Diff between FisPro versions 1.1.3 dated 2023-01-09 and 1.1.4 dated 2023-03-16
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/fis.R | 4 ++-- R/fisin.R | 4 ++-- R/fisout.R | 8 ++++---- R/mf.R | 16 ++++++++-------- build/partial.rdb |binary inst/doc/user-guide.html | 2 +- 9 files changed, 33 insertions(+), 29 deletions(-)
Title: Tool Suite to Investigate Other Packages
Description: Helps investigating other packages during code review by looking
at their dependencies.
Author: Maarten van Kessel [aut, cre]
Maintainer: Maarten van Kessel <m.l.vankessel@erasmusmc.nl>
Diff between DependencyReviewer versions 1.2.1 dated 2023-03-01 and 1.2.2 dated 2023-03-16
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- inst/doc/Documentation.pdf |binary 3 files changed, 8 insertions(+), 8 deletions(-)
More information about DependencyReviewer at CRAN
Permanent link
Title: Semi-Supervised Model for Geographical Document Classification
Description: Semissupervised model for geographical document classification (Watanabe 2018) <doi:10.1080/21670811.2017.1293487>.
This package currently contains seed dictionaries in English, German, French, Spanish, Italian, Russian, Hebrew, Arabic Japanese and Chinese (Simplified and Traditional).
Author: Kohei Watanabe [aut, cre, cph],
Stefan Mueller [aut],
Dani Madrid-Morales [aut],
Katerina Tertytchnaya [aut],
Ke Cheng [aut],
Chung-hong Chan [aut],
Claude Grasland [aut],
Giuseppe Carteny [aut],
Elad Segev [aut],
Dai Yamao [aut],
Barbara Ellynes Zucc [...truncated...]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between newsmap versions 0.8.1 dated 2022-05-09 and 0.8.2 dated 2023-03-16
newsmap-0.8.1/newsmap/man/print.textmodel_newsmap_summary.Rd |only newsmap-0.8.2/newsmap/DESCRIPTION | 8 newsmap-0.8.2/newsmap/LICENSE | 6 newsmap-0.8.2/newsmap/MD5 | 79 - newsmap-0.8.2/newsmap/NAMESPACE | 82 - newsmap-0.8.2/newsmap/NEWS.md | 171 +-- newsmap-0.8.2/newsmap/R/data.R | 192 +-- newsmap-0.8.2/newsmap/R/predict.R | 197 +-- newsmap-0.8.2/newsmap/R/textmodel-methods.R | 322 ++--- newsmap-0.8.2/newsmap/R/textmodel.R | 558 ++++------ newsmap-0.8.2/newsmap/R/utils.R | 34 newsmap-0.8.2/newsmap/inst/CITATION | 28 newsmap-0.8.2/newsmap/inst/WORDLIST | 80 - newsmap-0.8.2/newsmap/man/accuracy.Rd | 46 newsmap-0.8.2/newsmap/man/afe.Rd | 36 newsmap-0.8.2/newsmap/man/as.coefficients_textmodel.Rd | 34 newsmap-0.8.2/newsmap/man/as.statistics_textmodel.Rd | 32 newsmap-0.8.2/newsmap/man/as.summary.textmodel.Rd | 30 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_ar.Rd | 26 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_de.Rd | 26 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_en.Rd | 26 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_es.Rd | 26 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_fr.Rd | 26 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_he.Rd | 26 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_it.Rd | 26 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_ja.Rd | 26 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_pt.Rd | 26 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_ru.Rd | 30 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_zh_cn.Rd | 26 newsmap-0.8.2/newsmap/man/data_dictionary_newsmap_zh_tw.Rd | 26 newsmap-0.8.2/newsmap/man/predict.textmodel_newsmap.Rd | 83 - newsmap-0.8.2/newsmap/man/print.coefficients_textmodel.Rd | 46 newsmap-0.8.2/newsmap/man/print.statistics_textmodel.Rd | 42 newsmap-0.8.2/newsmap/man/print.summary.textmodel.Rd | 42 newsmap-0.8.2/newsmap/man/summary.textmodel_newsmap_accuracy.Rd | 36 newsmap-0.8.2/newsmap/man/textmodel_newsmap.Rd | 136 +- newsmap-0.8.2/newsmap/tests/testthat.R | 4 newsmap-0.8.2/newsmap/tests/testthat/test-data.R | 152 +- newsmap-0.8.2/newsmap/tests/testthat/test-dictionary.R | 344 +++--- newsmap-0.8.2/newsmap/tests/testthat/test-predict.R | 152 ++ newsmap-0.8.2/newsmap/tests/testthat/test-textmodel.R | 381 +++--- 41 files changed, 1877 insertions(+), 1792 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-16 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-01 1.1.0
2022-08-29 1.0.15
2022-03-14 1.0.14
2021-09-17 1.0.13
2021-02-03 1.0.12
2020-05-04 1.0.11
2020-04-19 1.0.10
2020-02-18 1.0.9
2019-02-18 1.0.8
2018-09-13 1.0.7
2018-08-30 1.0.6
2018-07-20 1.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-02 0.9.1
2019-03-18 0.9.0
2018-04-10 0.8.1
2018-03-08 0.8.0
2017-07-13 0.7.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-16 1.2.0
2022-07-07 1.1.0
2022-05-19 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-24 0.2.5
2019-05-01 0.2.4
2018-09-14 0.2.3
2018-04-11 0.2.2
2018-02-21 0.2.1
2017-09-26 0.2.0
2017-07-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-07 0.6.0
2021-05-27 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-11 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-22 1.3.5
2022-04-12 1.3.2
2022-04-12 1.3.3
2022-03-25 1.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-23 1.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-17 0.8.1
2017-06-01 0.6.1
2017-03-20 0.4.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-16 0.6.1
2021-05-10 0.5
2021-02-06 0.4
2021-02-02 0.3.2
2021-01-24 0.3
2020-12-16 0.2
2020-11-11 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2019-08-07 0.4.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-27 1.0.2
2022-03-14 1.0.0
2022-03-14 1.0.1
2022-01-05 0.3.0
2021-09-02 0.2.0
2021-02-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-12 0.4.0
2018-03-29 0.3.1
2017-07-08 0.3.0
2016-01-04 0.2.0
2014-12-24 0.1.1
2014-11-25 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-23 0.3-2
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2019-12-05 0.1.3
2019-10-09 0.1.2
2018-09-16 0.1.0
Title: Import and Analyse Ego-Centered Network Data
Description: Tools for importing, analyzing and visualizing ego-centered
network data. Supports several data formats, including the export formats of
'EgoNet', 'EgoWeb 2.0' and 'openeddi'. An interactive (shiny) app for the
intuitive visualization of ego-centered networks is provided. Also included
are procedures for creating and visualizing Clustered Graphs
(Lerner 2008 <DOI:10.1109/PACIFICVIS.2008.4475458>).
Author: Till Krenz [aut, cre],
Pavel N. Krivitsky [aut],
Raffaele Vacca [aut],
Michal Bojanowski [aut] ,
Markus Gamper [ctb],
Andreas Herz [aut],
Christopher McCarty [ctb]
Maintainer: Till Krenz <egor@tillt.net>
Diff between egor versions 1.22.12 dated 2022-12-20 and 1.23.3 dated 2023-03-16
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/subset.egor.R | 4 ++-- R/wizz.R | 8 ++++---- inst/doc/egor_allbus.html | 6 +++--- inst/doc/using_egor.html | 4 ++-- man/egor_vis_app.Rd | 8 ++++---- man/subset.egor.Rd | 4 ++-- tests/testthat/test-clustered_graphs.R | 2 +- 10 files changed, 35 insertions(+), 31 deletions(-)
Title: Port of 'Dparser' Package
Description: A Scannerless GLR parser/parser generator. Note that GLR standing for "generalized LR", where L stands for "left-to-right" and
R stands for "rightmost (derivation)". For more information see <https://en.wikipedia.org/wiki/GLR_parser>. This parser is based on the Tomita
(1987) algorithm. (Paper can be found at <https://aclanthology.org/P84-1073.pdf>).
The original 'dparser' package documentation can be found at <https://dparser.sourceforge.net/>. This allows you to add mini-languages to R (like
RxODE's ODE mini-language Wang, Hallow, and James 2015 <DOI:10.1002/psp4.12052>) or to parse other languages like 'NONMEM' to automatically translate
them to R code. To use this in your code, add a LinkingTo dparser in your DESCRIPTION file and instead of using #include <dparse.h> use
#include <dparser.h>. This also provides a R-based port of the make_dparser <https://dparser.sourceforge.net/d/make_dparser.cat> command called
mkdparser(). Additiona [...truncated...]
Author: Matthew Fidler [aut, cre],
John Plevyak [aut, cph]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between dparser versions 1.3.1-9 dated 2022-11-10 and 1.3.1-10 dated 2023-03-16
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- NEWS.md | 4 ++++ src/dparser2.h |only 4 files changed, 11 insertions(+), 6 deletions(-)