Title: The Reinert Method for Textual Data Clustering
Description: An R implementation of the Reinert text clustering method. For more
details about the algorithm see the included vignettes or Reinert (1990)
<doi:10.1177/075910639002600103>.
Author: Julien Barnier [aut, cre],
Florian Prive [ctb]
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>
Diff between rainette versions 0.3.0 dated 2022-02-18 and 0.3.1 dated 2023-03-17
DESCRIPTION | 14 MD5 | 84 ++-- NEWS.md | 5 R/cutree.R | 5 R/plot.R | 10 R/split_segments.R | 42 -- R/utils.R | 37 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/algorithmes.Rmd | 2 inst/doc/algorithmes.html | 36 + inst/doc/algorithms_en.Rmd | 2 inst/doc/algorithms_en.html | 36 + inst/doc/introduction_en.html | 134 ++++-- inst/doc/introduction_usage.Rmd | 11 inst/doc/introduction_usage.html | 162 +++++--- src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 5 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/plots/base-rainette-plot-measure-docprop.svg | 150 +++---- tests/testthat/_snaps/plots/base-rainette-plot-measure-frequency.svg | 150 +++---- tests/testthat/_snaps/plots/base-rainette-plot-measure-lr.svg | 134 +++--- tests/testthat/_snaps/plots/base-rainette-plot-with-free-scales.svg | 150 +++---- tests/testthat/_snaps/plots/base-rainette-plot-with-k-and-without-negative.svg | 90 ++-- tests/testthat/_snaps/plots/base-rainette-plot-with-k-n-terms-and-font-size.svg | 160 ++++---- tests/testthat/_snaps/plots/base-rainette-plot.svg | 180 ++++----- tests/testthat/_snaps/plots/base-rainette2-plot-measure-docprop.svg | 130 +++--- tests/testthat/_snaps/plots/base-rainette2-plot-measure-frequency.svg | 130 +++--- tests/testthat/_snaps/plots/base-rainette2-plot-measure-lr.svg | 130 +++--- tests/testthat/_snaps/plots/base-rainette2-plot-with-complete-groups.svg | 128 +++--- tests/testthat/_snaps/plots/base-rainette2-plot-with-free-scales.svg | 130 +++--- tests/testthat/_snaps/plots/base-rainette2-plot-with-k-5.svg | 194 +++++----- tests/testthat/_snaps/plots/base-rainette2-plot-with-k-and-without-negative.svg | 98 ++--- tests/testthat/_snaps/plots/base-rainette2-plot-with-k-n-terms-and-font-size.svg | 170 ++++---- tests/testthat/_snaps/plots/base-rainette2-plot.svg | 162 ++++---- tests/testthat/test_cutree.R | 7 tests/testthat/test_plots.R | 5 tests/testthat/test_rainette1.R | 52 +- tests/testthat/test_split_segments.R | 74 ++- vignettes/algorithmes.Rmd | 2 vignettes/algorithms_en.Rmd | 2 vignettes/introduction_usage.Rmd | 11 43 files changed, 1611 insertions(+), 1417 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox developed orginally for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Validation and cross validation of scales developed using basic machine learning algorithms are provided, as are functions for simulating and testing particular item and test structures. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, including mediation models, factor analysis and structural equation models are created using basic graphics. Some of the fun [...truncated...]
Author: William Revelle [aut, cre]
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 2.2.9 dated 2022-09-29 and 2.3.3 dated 2023-03-17
psych-2.2.9/psych/R/new.ICLUST.diagram.R |only psych-2.3.3/psych/DESCRIPTION | 10 - psych-2.3.3/psych/MD5 | 141 +++++++++++------------ psych-2.3.3/psych/NAMESPACE | 2 psych-2.3.3/psych/R/ICLUST.R | 2 psych-2.3.3/psych/R/ICLUST.diagram.R |only psych-2.3.3/psych/R/VSS.R | 28 ++++ psych-2.3.3/psych/R/VSS.scree.R | 9 - psych-2.3.3/psych/R/bestScale.R | 30 +++- psych-2.3.3/psych/R/bigCor.R | 17 +- psych-2.3.3/psych/R/biplot.psych.R | 2 psych-2.3.3/psych/R/cohen.d.R | 11 + psych-2.3.3/psych/R/cor.ci.R | 15 +- psych-2.3.3/psych/R/cor.plot.R | 18 +- psych-2.3.3/psych/R/crossValidation.r | 9 - psych-2.3.3/psych/R/diagram.R | 14 +- psych-2.3.3/psych/R/dummy.code.R | 2 psych-2.3.3/psych/R/error.dots.r | 33 ++++- psych-2.3.3/psych/R/extension.diagram.r | 12 + psych-2.3.3/psych/R/fa.diagram.R | 11 + psych-2.3.3/psych/R/fa.parallel.R | 9 - psych-2.3.3/psych/R/kappa.R | 8 - psych-2.3.3/psych/R/lowerUpper.R | 3 psych-2.3.3/psych/R/misc.R | 16 ++ psych-2.3.3/psych/R/polychoric.R | 2 psych-2.3.3/psych/R/principal.R | 2 psych-2.3.3/psych/R/print.psych.R | 9 - psych-2.3.3/psych/R/print.psych.fa.R | 13 +- psych-2.3.3/psych/R/print.psych.iclust.R | 4 psych-2.3.3/psych/R/reliability.R | 10 + psych-2.3.3/psych/R/scoreBy.r | 2 psych-2.3.3/psych/R/set.cor.R | 2 psych-2.3.3/psych/R/sim.congeneric.R | 19 ++- psych-2.3.3/psych/R/sim.structural.R | 10 + psych-2.3.3/psych/R/simCor.r | 3 psych-2.3.3/psych/R/summary.psych.R | 4 psych-2.3.3/psych/R/tetrachor.R | 3 psych-2.3.3/psych/build/partial.rdb |binary psych-2.3.3/psych/build/vignette.rds |binary psych-2.3.3/psych/inst/CITATION | 26 +--- psych-2.3.3/psych/inst/News.Rd | 78 ++++++++---- psych-2.3.3/psych/inst/doc/intro.Rnw | 4 psych-2.3.3/psych/inst/doc/intro.pdf |binary psych-2.3.3/psych/inst/doc/scoring.Rnw | 2 psych-2.3.3/psych/inst/doc/scoring.pdf |binary psych-2.3.3/psych/inst/old.psych.23.CITATION.txt |only psych-2.3.3/psych/man/00.psych-package.Rd | 40 ++++-- psych-2.3.3/psych/man/ICLUST.Rd | 31 +++-- psych-2.3.3/psych/man/VSS.Rd | 5 psych-2.3.3/psych/man/VSS.scree.Rd | 7 - psych-2.3.3/psych/man/alpha.Rd | 5 psych-2.3.3/psych/man/bigCor.Rd | 22 +++ psych-2.3.3/psych/man/biplot.psych.Rd | 25 +++- psych-2.3.3/psych/man/cohen.d.Rd | 11 + psych-2.3.3/psych/man/cor.plot.Rd | 39 ++++-- psych-2.3.3/psych/man/corr.test.Rd | 4 psych-2.3.3/psych/man/diagram.Rd | 2 psych-2.3.3/psych/man/eigen.loadings.Rd | 2 psych-2.3.3/psych/man/error.bars.by.Rd | 4 psych-2.3.3/psych/man/error.dots.Rd | 16 ++ psych-2.3.3/psych/man/fa.Rd | 4 psych-2.3.3/psych/man/fa.diagram.Rd | 2 psych-2.3.3/psych/man/fa.parallel.Rd | 4 psych-2.3.3/psych/man/factor.scores.Rd | 2 psych-2.3.3/psych/man/iclust.diagram.Rd | 19 ++- psych-2.3.3/psych/man/misc.Rd | 3 psych-2.3.3/psych/man/principal.Rd | 5 psych-2.3.3/psych/man/set.cor.Rd | 78 +++++++----- psych-2.3.3/psych/man/sim.Rd | 2 psych-2.3.3/psych/man/sim.congeneric.Rd | 15 +- psych-2.3.3/psych/man/tetrachor.Rd | 2 psych-2.3.3/psych/vignettes/intro.Rnw | 4 psych-2.3.3/psych/vignettes/scoring.Rnw | 2 73 files changed, 632 insertions(+), 318 deletions(-)
Title: Estimates and Plots Single-Level and Multilevel Latent Class
Models
Description: Efficiently estimates single- and multilevel latent class models with covariates, allowing for output visualization in all specifications.
Author: Roberto Di Mari [aut, cre],
Johan Lyrvall [aut],
Zsuzsa Bakk [ctb],
Jennifer Oser [ctb],
Jouni Kuha [ctb]
Maintainer: Roberto Di Mari <roberto.dimari@unict.it>
Diff between multilevLCA versions 1.0 dated 2023-03-14 and 1.1 dated 2023-03-17
DESCRIPTION | 6 +-- MD5 | 10 ++--- build/partial.rdb |binary man/dataTOY.Rd | 2 - man/multiLCA.Rd | 2 - man/multilevLCA-package.Rd | 78 ++++++++++++++++++++++----------------------- 6 files changed, 49 insertions(+), 49 deletions(-)
Title: Log-Likelihood Functions for 'rxode2'
Description: Provides the log-likelihoods with gradients from 'stan'
(Carpenter et al (2015), <arXiv:1509.07164>) needed
for generalized log-likelihood estimation in 'nlmixr2'
(Fidler et al (2019) <doi:10.1002/psp4.12445>). This is
split of to reduce computational burden of recompiling 'rxode2'
(Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) which runs
the 'nlmixr2' models during estimation.
Author: Matthew L. Fidler [aut, cre]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2ll versions 2.0.10 dated 2023-03-16 and 2.0.11 dated 2023-03-17
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 6 +++++- src/Makevars.in | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Description: Read and write 'las' and 'laz' binary file formats. The LAS file format is a public file format for the interchange of 3-dimensional point cloud data between data users. The LAS specifications are approved by the American Society for Photogrammetry and Remote Sensing <https://www.asprs.org/divisions-committees/lidar-division/laser-las-file-format-exchange-activities>. The LAZ file format is an open and lossless compression scheme for binary LAS format versions 1.0 to 1.4 <https://laszip.org/>.
Author: Jean-Romain Roussel [aut, cre, cph],
Florian De Boissieu [aut, ctb] ,
Martin Isenburg [cph] ,
David Auty [ctb] ,
Pierrick Marie [ctb] ,
Tiago de Conto [ctb]
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between rlas versions 1.6.2 dated 2023-01-06 and 1.6.3 dated 2023-03-17
DESCRIPTION | 6 ++--- MD5 | 40 ++++++++++++++++++------------------- NEWS.md | 5 ++++ src/LASlib/lasdefinitions.hpp | 5 +++- src/LASlib/lasreader.cpp | 12 +++++++---- src/LASlib/lasreader_asc.cpp | 20 +++++++++--------- src/LASlib/lasreader_bil.cpp | 36 ++++++++++++++++----------------- src/LASlib/lasreader_dtm.cpp | 28 ++++++++++++------------- src/LASlib/lasreader_ply.cpp | 13 ++++++------ src/LASlib/lasreader_txt.cpp | 38 ++++++++++++++++++----------------- src/LASlib/lasreadermerged.cpp | 8 +++---- src/LASlib/lastransform.cpp | 4 +-- src/LASlib/lasutility.cpp | 34 ++++++++++++++++--------------- src/LASlib/laswriter_bin.cpp | 4 +-- src/LASlib/laswriter_las.cpp | 16 +++++++------- src/LASlib/laswriter_txt.cpp | 36 ++++++++++++++++++--------------- src/LASlib/laswriter_wrl.cpp | 32 ++++++++++++++--------------- src/LASlib/laswritercompatible.cpp | 12 +++++------ src/LASzip/mydefs.hpp | 7 ++++-- src/Makevars | 2 - src/Makevars.win | 2 - 21 files changed, 190 insertions(+), 170 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 0.17.1 dated 2023-03-16 and 0.17.2 dated 2023-03-17
renv-0.17.1/renv/inst/repos/src/contrib/renv_0.17.1.tar.gz |only renv-0.17.2/renv/DESCRIPTION | 6 +- renv-0.17.2/renv/MD5 | 34 ++++++------- renv-0.17.2/renv/NEWS.md | 6 ++ renv-0.17.2/renv/R/activate.R | 2 renv-0.17.2/renv/R/cellar.R | 4 - renv-0.17.2/renv/R/properties.R | 2 renv-0.17.2/renv/R/snapshot.R | 2 renv-0.17.2/renv/inst/doc/docker.html | 2 renv-0.17.2/renv/inst/doc/renv.html | 6 +- renv-0.17.2/renv/inst/repos/src/contrib/PACKAGES | 4 - renv-0.17.2/renv/inst/repos/src/contrib/PACKAGES.gz |binary renv-0.17.2/renv/inst/repos/src/contrib/PACKAGES.rds |binary renv-0.17.2/renv/inst/repos/src/contrib/renv_0.17.2.tar.gz |only renv-0.17.2/renv/tests/testthat/resources/DESCRIPTION | 3 + renv-0.17.2/renv/tests/testthat/test-description.R | 26 +++++++++ renv-0.17.2/renv/tests/testthat/test-hash.R | 8 +++ renv-0.17.2/renv/tests/testthat/test-preflight.R | 10 ++- renv-0.17.2/renv/tests/testthat/test-r.R | 4 - 19 files changed, 83 insertions(+), 36 deletions(-)
Title: Tools to Accompany the 'psych' Package for Psychological
Research
Description: Support functions, data sets, and vignettes for the 'psych' package. Contains several of the biggest data sets for the 'psych' package as well as one vignette. A few helper functions for file manipulation are included as well. For more information, see the <https://personality-project.org/r/> web page.
Author: William Revelle [aut, cre]
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psychTools versions 2.2.9 dated 2022-09-25 and 2.3.3 dated 2023-03-17
psychTools-2.2.9/psychTools/vignettes/itemDisplays.tex |only psychTools-2.3.3/psychTools/DESCRIPTION | 8 ++-- psychTools-2.3.3/psychTools/MD5 | 31 +++++++++-------- psychTools-2.3.3/psychTools/NAMESPACE | 2 - psychTools-2.3.3/psychTools/R/df2latex.R | 5 +- psychTools-2.3.3/psychTools/build/partial.rdb |binary psychTools-2.3.3/psychTools/build/vignette.rds |binary psychTools-2.3.3/psychTools/data/colom.ed0.rda |only psychTools-2.3.3/psychTools/data/colom.ed1.rda |only psychTools-2.3.3/psychTools/data/colom.ed2.rda |only psychTools-2.3.3/psychTools/data/colom.ed3.rda |only psychTools-2.3.3/psychTools/data/colom.rda |only psychTools-2.3.3/psychTools/inst/CITATION | 31 ++++++++--------- psychTools-2.3.3/psychTools/inst/NEWS.Rd | 15 ++++++-- psychTools-2.3.3/psychTools/inst/doc/factor.pdf |binary psychTools-2.3.3/psychTools/inst/doc/mediation.pdf |binary psychTools-2.3.3/psychTools/inst/doc/omega.pdf |binary psychTools-2.3.3/psychTools/inst/doc/overview.pdf |binary psychTools-2.3.3/psychTools/man/colom.Rd |only psychTools-2.3.3/psychTools/man/holzinger.swineford.Rd | 2 - 20 files changed, 55 insertions(+), 39 deletions(-)
Title: A Framework for Clustering Longitudinal Data
Description: A framework for clustering longitudinal datasets in a standardized way.
The package provides an interface to existing R packages for clustering longitudinal univariate trajectories, facilitating reproducible and transparent analyses.
Additionally, standard tools are provided to support cluster analyses, including repeated estimation, model validation, and model assessment.
The interface enables users to compare results between methods, and to implement and evaluate new methods with ease.
The 'akmedoids' package is available from <https://github.com/MAnalytics/akmedoids>. The 'clusterCrit' package is available from the CRAN archive.
Author: Niek Den Teuling [aut, cre] ,
Steffen Pauws [ctb],
Edwin van den Heuvel [ctb],
Koninklijke Philips N.V. [cph]
Maintainer: Niek Den Teuling <niek.den.teuling@philips.com>
Diff between latrend versions 1.5.0 dated 2022-11-10 and 1.5.1 dated 2023-03-17
latrend-1.5.0/latrend/data/OSA.adherence.rda |only latrend-1.5.0/latrend/man/OSA.adherence.Rd |only latrend-1.5.1/latrend/DESCRIPTION | 25 latrend-1.5.1/latrend/MD5 | 210 latrend-1.5.1/latrend/NAMESPACE | 3 latrend-1.5.1/latrend/NEWS.md | 8 latrend-1.5.1/latrend/R/data.R | 85 latrend-1.5.1/latrend/R/generics.R | 37 latrend-1.5.1/latrend/R/latrend.R | 1829 +++---- latrend-1.5.1/latrend/R/meta-fit-converged.R | 183 latrend-1.5.1/latrend/R/meta-fit-rep.R | 203 latrend-1.5.1/latrend/R/meta-fit.R | 30 latrend-1.5.1/latrend/R/meta-method.R | 206 latrend-1.5.1/latrend/R/method.R | 98 latrend-1.5.1/latrend/R/methodLcmmGMM.R | 558 +- latrend-1.5.1/latrend/R/methods.R | 70 latrend-1.5.1/latrend/R/metrics.R |only latrend-1.5.1/latrend/R/metricsExternal.R | 30 latrend-1.5.1/latrend/R/metricsInternal.R | 38 latrend-1.5.1/latrend/R/model.R | 3587 +++++++------- latrend-1.5.1/latrend/R/models.R | 57 latrend-1.5.1/latrend/R/zzz.R | 448 - latrend-1.5.1/latrend/build/partial.rdb |binary latrend-1.5.1/latrend/data/PAP.adh.rda |binary latrend-1.5.1/latrend/data/PAP.adh1y.rda |binary latrend-1.5.1/latrend/inst/REFERENCES.bib | 102 latrend-1.5.1/latrend/inst/doc/demo.html | 165 latrend-1.5.1/latrend/inst/doc/implement.html | 111 latrend-1.5.1/latrend/inst/doc/simulation.html | 117 latrend-1.5.1/latrend/man/PAP.adh.Rd | 40 latrend-1.5.1/latrend/man/PAP.adh1y.Rd |only latrend-1.5.1/latrend/man/as.data.frame.lcModels.Rd | 14 latrend-1.5.1/latrend/man/as.lcModels.Rd | 22 latrend-1.5.1/latrend/man/clusterNames.Rd | 38 latrend-1.5.1/latrend/man/clusterProportions.Rd | 37 latrend-1.5.1/latrend/man/clusterSizes.Rd | 37 latrend-1.5.1/latrend/man/clusterTrajectories.Rd | 24 latrend-1.5.1/latrend/man/coef.lcModel.Rd | 60 latrend-1.5.1/latrend/man/compose.Rd | 10 latrend-1.5.1/latrend/man/converged.Rd | 24 latrend-1.5.1/latrend/man/deviance.lcModel.Rd | 24 latrend-1.5.1/latrend/man/df.residual.lcModel.Rd | 24 latrend-1.5.1/latrend/man/estimationTime.Rd | 38 latrend-1.5.1/latrend/man/evaluate.lcMethod.Rd | 5 latrend-1.5.1/latrend/man/externalMetric.Rd | 42 latrend-1.5.1/latrend/man/fit.Rd | 10 latrend-1.5.1/latrend/man/fitted.lcModel.Rd | 24 latrend-1.5.1/latrend/man/fittedTrajectories.Rd | 24 latrend-1.5.1/latrend/man/generateLongData.Rd | 3 latrend-1.5.1/latrend/man/getCall.lcModel.Rd | 37 latrend-1.5.1/latrend/man/getLcMethod.Rd | 37 latrend-1.5.1/latrend/man/ids.Rd | 38 latrend-1.5.1/latrend/man/interface-metaMethods.Rd | 6 latrend-1.5.1/latrend/man/latrend-approaches.Rd |only latrend-1.5.1/latrend/man/latrend-data.Rd |only latrend-1.5.1/latrend/man/latrend-estimation.Rd |only latrend-1.5.1/latrend/man/latrend-generics.Rd | 2 latrend-1.5.1/latrend/man/latrend-methods.Rd |only latrend-1.5.1/latrend/man/latrend-metrics.Rd |only latrend-1.5.1/latrend/man/latrend-package.Rd | 27 latrend-1.5.1/latrend/man/latrend-parallel.Rd | 2 latrend-1.5.1/latrend/man/latrend.Rd | 27 latrend-1.5.1/latrend/man/latrendBatch.Rd | 3 latrend-1.5.1/latrend/man/latrendBoot.Rd | 5 latrend-1.5.1/latrend/man/latrendCV.Rd | 5 latrend-1.5.1/latrend/man/latrendData.Rd | 13 latrend-1.5.1/latrend/man/latrendRep.Rd | 8 latrend-1.5.1/latrend/man/lcFitMethods.Rd | 7 latrend-1.5.1/latrend/man/lcMethod-class.Rd | 20 latrend-1.5.1/latrend/man/lcMethod-estimation.Rd |only latrend-1.5.1/latrend/man/lcMethodLcmmGBTM.Rd | 12 latrend-1.5.1/latrend/man/lcMethodLcmmGMM.Rd | 23 latrend-1.5.1/latrend/man/lcModel-class.Rd | 26 latrend-1.5.1/latrend/man/lcModel.Rd |only latrend-1.5.1/latrend/man/lcModels-class.Rd |only latrend-1.5.1/latrend/man/lcModels.Rd | 32 latrend-1.5.1/latrend/man/logLik.lcModel.Rd | 20 latrend-1.5.1/latrend/man/max.lcModels.Rd | 24 latrend-1.5.1/latrend/man/metric.Rd | 46 latrend-1.5.1/latrend/man/min.lcModels.Rd | 24 latrend-1.5.1/latrend/man/model.frame.lcModel.Rd | 24 latrend-1.5.1/latrend/man/nClusters.Rd | 42 latrend-1.5.1/latrend/man/nIds.Rd | 37 latrend-1.5.1/latrend/man/nobs.lcModel.Rd | 24 latrend-1.5.1/latrend/man/plot-lcModel-method.Rd | 37 latrend-1.5.1/latrend/man/plotClusterTrajectories.Rd | 37 latrend-1.5.1/latrend/man/plotFittedTrajectories.Rd | 37 latrend-1.5.1/latrend/man/plotMetric.Rd | 25 latrend-1.5.1/latrend/man/postFit.Rd | 10 latrend-1.5.1/latrend/man/postprob.Rd | 24 latrend-1.5.1/latrend/man/preFit.Rd | 10 latrend-1.5.1/latrend/man/predict.lcModel.Rd | 24 latrend-1.5.1/latrend/man/predictAssignments.Rd | 24 latrend-1.5.1/latrend/man/predictForCluster.Rd | 24 latrend-1.5.1/latrend/man/predictPostprob.Rd | 24 latrend-1.5.1/latrend/man/prepareData.Rd | 10 latrend-1.5.1/latrend/man/print.lcModels.Rd | 22 latrend-1.5.1/latrend/man/qqPlot.Rd | 37 latrend-1.5.1/latrend/man/residuals.lcModel.Rd | 24 latrend-1.5.1/latrend/man/sigma.lcModel.Rd | 24 latrend-1.5.1/latrend/man/strip.Rd | 38 latrend-1.5.1/latrend/man/subset.lcModels.Rd | 22 latrend-1.5.1/latrend/man/time.lcModel.Rd | 24 latrend-1.5.1/latrend/man/trajectoryAssignments.Rd | 37 latrend-1.5.1/latrend/man/update.lcModel.Rd | 8 latrend-1.5.1/latrend/man/validate.Rd | 10 latrend-1.5.1/latrend/tests/testthat/test-data.R | 53 latrend-1.5.1/latrend/tests/testthat/test-fit-converged.R | 190 latrend-1.5.1/latrend/tests/testthat/test-lcmm.R | 176 latrend-1.5.1/latrend/tests/testthat/test-meta-method.R | 248 latrend-1.5.1/latrend/tests/testthat/test-metrics.R | 58 latrend-1.5.1/latrend/tests/testthat/test-quick.R | 2 112 files changed, 6192 insertions(+), 4338 deletions(-)
Title: Classification and Visualization
Description: Miscellaneous functions for classification and visualization,
e.g. regularized discriminant analysis, sknn() kernel-density naive Bayes,
an interface to 'svmlight' and stepclass() wrapper variable selection
for supervised classification, partimat() visualization of classification rules
and shardsplot() of cluster results as well as kmodes() clustering for categorical data,
corclust() variable clustering, variable extraction from different variable clustering models
and weight of evidence preprocessing.
Author: Christian Roever, Nils Raabe, Karsten Luebke, Uwe Ligges, Gero Szepannek, Marc Zentgraf, David Meyer
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>
Diff between klaR versions 1.7-1 dated 2022-06-27 and 1.7-2 dated 2023-03-17
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS | 4 ++-- R/svmlight.R | 10 +++++----- inst/CITATION | 2 +- man/svmlight.Rd | 1 - 6 files changed, 18 insertions(+), 19 deletions(-)
Title: Event Table Functions for 'rxode2'
Description: Provides the event table and support functions needed for
'rxode2' (Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) and 'nlmixr2'
(Fidler et al (2019) <doi:10.1002/psp4.12445>).
This split will reduce computational burden of recompiling 'rxode2'.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [ctb],
Fuji Goro [ctb],
Morwenn [ctb],
Igor Kushnir [ctb]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2et versions 2.0.9 dated 2022-10-13 and 2.0.10 dated 2023-03-17
rxode2et-2.0.10/rxode2et/DESCRIPTION | 8 - rxode2et-2.0.10/rxode2et/MD5 | 19 +-- rxode2et-2.0.10/rxode2et/NEWS.md | 10 + rxode2et-2.0.10/rxode2et/R/et.R | 10 + rxode2et-2.0.10/rxode2et/R/rxode2et_md5.R | 2 rxode2et-2.0.10/rxode2et/README.md | 13 +- rxode2et-2.0.10/rxode2et/src/Makevars.in | 3 rxode2et-2.0.10/rxode2et/src/et.cpp | 115 +++++++++++----------- rxode2et-2.0.10/rxode2et/src/rxode2random.cpp |only rxode2et-2.0.10/rxode2et/tests/testthat/test-et.R | 67 +++++++++++- rxode2et-2.0.9/rxode2et/inst/include |only rxode2et-2.0.9/rxode2et/src/rxode2random.c |only 12 files changed, 163 insertions(+), 84 deletions(-)
Title: Creates Statistical Reports
Description: Contains functions to create regulatory-style statistical reports.
Originally designed to create tables, listings, and figures for the
pharmaceutical, biotechnology, and medical device industries, these
reports are generalized enough that they could be used in any industry.
Generates text, rich-text, PDF, HTML, and Microsoft Word file formats.
The package specializes
in printing wide and long tables with automatic page wrapping and splitting.
Reports can be produced with a minimum of function calls, and without
relying on other table packages. The package supports titles, footnotes,
page header, page footers, spanning headers, page by variables,
and automatic page numbering.
Author: David Bosak [aut, cre],
Kevin Kramer [ctb],
Duong Tran [ctb],
Raphael Huang [ctb],
Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between reporter versions 1.3.8 dated 2022-11-28 and 1.3.9 dated 2023-03-17
DESCRIPTION | 8 +-- MD5 | 71 +++++++++++++++++++++------------ NEWS.md | 7 +++ R/create_table_docx.R | 2 R/create_table_html.R | 7 ++- R/create_table_pdf.R | 3 - R/create_table_rtf.R | 7 ++- R/page_template_docx.R | 3 - R/page_template_html.R | 9 +++- R/page_template_pdf.R | 5 +- R/page_template_rtf.R | 7 ++- R/report_spec.r | 6 ++ R/table_spec.r | 5 +- R/utilities.R | 2 R/write_docx.R | 11 +++-- R/write_pdf.R | 84 ++++++++++++++++++++++++++++++++------- README.md | 2 man/footnotes.Rd | 7 ++- man/spanning_header.Rd | 4 + tests/testthat/docx/test41.docx |only tests/testthat/docx/test42.docx |only tests/testthat/html/test35.html |only tests/testthat/html/test36.html |only tests/testthat/pdf2/test22.pdf |only tests/testthat/pdf2/test70.pdf |only tests/testthat/pdf2/test71.pdf |only tests/testthat/pdf2/user1.pdf |only tests/testthat/pdf2/user2.pdf |only tests/testthat/pdf2/user3.pdf |only tests/testthat/pdf2/user4.pdf |only tests/testthat/pdf2/user5.pdf |only tests/testthat/rtf2/test86.rtf |only tests/testthat/rtf2/test87.rtf |only tests/testthat/rtf2/user1.rtf |only tests/testthat/rtf2/user2.rtf |only tests/testthat/rtf2/user3.rtf |only tests/testthat/rtf2/user4.rtf |only tests/testthat/rtf2/user5.rtf |only tests/testthat/rtf2/user6.rtf |only tests/testthat/rtf2/user7.rtf |only tests/testthat/test-docx.R | 69 ++++++++++++++++++++++++++++++++ tests/testthat/test-html.R | 71 +++++++++++++++++++++++++++++++++ tests/testthat/test-pdf2.R | 86 ++++++++++++++++++++++++++++++++++++---- tests/testthat/test-rtf2.R | 73 +++++++++++++++++++++++++++++++++ tests/testthat/test-user.R | 2 tests/testthat/test-write_pdf.R | 65 +++++++++++++++--------------- tests/testthat/user |only 47 files changed, 514 insertions(+), 102 deletions(-)
Title: Citizen Voting Age Population
Description: Works with the Citizen Voting Age Population special tabulation from the US Census Bureau <https://www.census.gov/programs-surveys/decennial-census/about/voting-rights/cvap.html>. Provides tools to download and process raw data. Also provides a downloading interface to processed data. Implements a very basic approach to estimate block level citizen voting age population from block group data.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between cvap versions 0.1.1 dated 2022-04-16 and 0.1.3 dated 2023-03-17
DESCRIPTION | 16 ++++++++-------- MD5 | 26 +++++++++++++------------- NEWS.md | 7 +++++++ R/distribute.R | 33 ++++++++++++++++++++++++--------- R/get.R | 4 ++-- R/process.R | 6 +++--- R/url.R | 4 ++-- R/utils.R | 4 ++-- README.md | 4 ++-- man/cvap_census_url.Rd | 4 ++-- man/cvap_distribute.Rd | 11 ++++++++--- man/cvap_distribute_censable.Rd | 14 ++++++++++++-- man/cvap_get.Rd | 4 ++-- tests/testthat/test-get.R | 5 +++++ 14 files changed, 92 insertions(+), 50 deletions(-)
Title: Detecting UN Sustainable Development Goals in Text
Description: The United Nations’ Sustainable Development Goals (SDGs) have become an important guideline for organisations to monitor and plan their contributions to social, economic, and environmental transformations. The 'text2sdg' package is an open-source analysis package that identifies SDGs in text using scientifically developed query systems, opening up the opportunity to monitor any type of text-based data, such as scientific output or corporate publications. For more information regarding the methodology see Meier, Mata & Wulff (2022) <arXiv:2110.05856>.
Author: Dirk U. Wulff [aut] ,
Dominik S. Meier [aut, cre] ,
Rui Mata [ctb]
Maintainer: Dominik S. Meier <dominikmeier@outlook.com>
Diff between text2sdg versions 1.0.0 dated 2023-01-24 and 1.1.1 dated 2023-03-17
text2sdg-1.0.0/text2sdg/data/ensembles.rda |only text2sdg-1.0.0/text2sdg/man/ensembles.Rd |only text2sdg-1.1.1/text2sdg/DESCRIPTION | 13 text2sdg-1.1.1/text2sdg/MD5 | 59 - text2sdg-1.1.1/text2sdg/NEWS.md | 18 text2sdg-1.1.1/text2sdg/R/auckland.R | 35 - text2sdg-1.1.1/text2sdg/R/aurora.R | 163 ++-- text2sdg-1.1.1/text2sdg/R/crosstab.R | 112 +-- text2sdg-1.1.1/text2sdg/R/datasets.R | 8 text2sdg-1.1.1/text2sdg/R/detect_any.R | 99 +- text2sdg-1.1.1/text2sdg/R/elsevier.R | 37 - text2sdg-1.1.1/text2sdg/R/ensemble.R | 183 +++-- text2sdg-1.1.1/text2sdg/R/globals.R | 8 text2sdg-1.1.1/text2sdg/R/helper.R | 24 text2sdg-1.1.1/text2sdg/R/osdg.R | 37 - text2sdg-1.1.1/text2sdg/R/plot.R | 121 +-- text2sdg-1.1.1/text2sdg/R/sdsn.R | 39 - text2sdg-1.1.1/text2sdg/R/siris.R | 42 - text2sdg-1.1.1/text2sdg/R/systems.R | 121 ++- text2sdg-1.1.1/text2sdg/R/text2sdg.R | 3 text2sdg-1.1.1/text2sdg/README.md | 33 text2sdg-1.1.1/text2sdg/inst/doc/text2sdg.R | 44 - text2sdg-1.1.1/text2sdg/inst/doc/text2sdg.Rmd | 44 - text2sdg-1.1.1/text2sdg/inst/doc/text2sdg.html | 849 ++++++++++++++++++------- text2sdg-1.1.1/text2sdg/man/crosstab_sdg.Rd | 1 text2sdg-1.1.1/text2sdg/man/detect_any.Rd | 14 text2sdg-1.1.1/text2sdg/man/detect_sdg.Rd | 13 text2sdg-1.1.1/text2sdg/man/text2sdg.Rd | 3 text2sdg-1.1.1/text2sdg/tests |only text2sdg-1.1.1/text2sdg/vignettes/text2sdg.Rmd | 44 - 30 files changed, 1379 insertions(+), 788 deletions(-)
Title: Extract 'REDCap' Databases into Tidy 'Tibble's
Description: Convert 'REDCap' exports into tidy tables for easy handling of 'REDCap' repeat instruments and event arms.
Author: Richard Hanna [aut, cre],
Stephan Kadauke [aut],
Ezra Porter [aut]
Maintainer: Richard Hanna <richardshanna91@gmail.com>
Diff between REDCapTidieR versions 0.2.0 dated 2022-12-07 and 0.3.0 dated 2023-03-17
REDCapTidieR-0.2.0/REDCapTidieR/inst/httptest/start-vignette.R |only REDCapTidieR-0.2.0/REDCapTidieR/man/check_req_labelled_fields.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/DESCRIPTION | 17 REDCapTidieR-0.3.0/REDCapTidieR/MD5 | 145 +-- REDCapTidieR-0.3.0/REDCapTidieR/NAMESPACE | 24 REDCapTidieR-0.3.0/REDCapTidieR/NEWS.md | 32 REDCapTidieR-0.3.0/REDCapTidieR/R/bind_tibbles.R | 16 REDCapTidieR-0.3.0/REDCapTidieR/R/checks.R | 455 +++++++--- REDCapTidieR-0.3.0/REDCapTidieR/R/clean_redcap.R | 48 - REDCapTidieR-0.3.0/REDCapTidieR/R/clean_redcap_long.R | 89 + REDCapTidieR-0.3.0/REDCapTidieR/R/data.R |only REDCapTidieR-0.3.0/REDCapTidieR/R/dev_utils.R |only REDCapTidieR-0.3.0/REDCapTidieR/R/extract_tibble.R | 32 REDCapTidieR-0.3.0/REDCapTidieR/R/labelled.R | 29 REDCapTidieR-0.3.0/REDCapTidieR/R/read_redcap.R | 101 +- REDCapTidieR-0.3.0/REDCapTidieR/R/utils.R | 380 +++++++- REDCapTidieR-0.3.0/REDCapTidieR/README.md | 5 REDCapTidieR-0.3.0/REDCapTidieR/data |only REDCapTidieR-0.3.0/REDCapTidieR/inst/WORDLIST |only REDCapTidieR-0.3.0/REDCapTidieR/inst/doc/REDCapTidieR.R | 16 REDCapTidieR-0.3.0/REDCapTidieR/inst/doc/REDCapTidieR.Rmd | 28 REDCapTidieR-0.3.0/REDCapTidieR/inst/doc/REDCapTidieR.html | 41 REDCapTidieR-0.3.0/REDCapTidieR/inst/doc/diving_deeper.R | 37 REDCapTidieR-0.3.0/REDCapTidieR/inst/doc/diving_deeper.Rmd | 118 +- REDCapTidieR-0.3.0/REDCapTidieR/inst/doc/diving_deeper.html | 310 ++++-- REDCapTidieR-0.3.0/REDCapTidieR/inst/doc/glossary.Rmd | 118 +- REDCapTidieR-0.3.0/REDCapTidieR/inst/doc/glossary.html | 152 ++- REDCapTidieR-0.3.0/REDCapTidieR/inst/httptest/redact.R | 18 REDCapTidieR-0.3.0/REDCapTidieR/inst/misc/fake_credentials.csv | 2 REDCapTidieR-0.3.0/REDCapTidieR/inst/testdata/db_data_classic.RDS |binary REDCapTidieR-0.3.0/REDCapTidieR/inst/testdata/db_metadata_classic.RDS |binary REDCapTidieR-0.3.0/REDCapTidieR/inst/testdata/redcaptidier_longitudinal_db.RDS |binary REDCapTidieR-0.3.0/REDCapTidieR/man/add_metadata.Rd | 11 REDCapTidieR-0.3.0/REDCapTidieR/man/add_partial_keys.Rd | 6 REDCapTidieR-0.3.0/REDCapTidieR/man/as_supertbl.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/man/bind_tibbles.Rd | 12 REDCapTidieR-0.3.0/REDCapTidieR/man/check_forms_exist.Rd | 4 REDCapTidieR-0.3.0/REDCapTidieR/man/check_parsed_labels.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/man/check_redcap_populated.Rd | 4 REDCapTidieR-0.3.0/REDCapTidieR/man/check_repeat_and_nonrepeat.Rd | 4 REDCapTidieR-0.3.0/REDCapTidieR/man/check_req_labelled_metadata_fields.Rd | 4 REDCapTidieR-0.3.0/REDCapTidieR/man/check_user_rights.Rd | 4 REDCapTidieR-0.3.0/REDCapTidieR/man/checkmate.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/man/create_repeat_instance_vars.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/man/db_has_repeat_forms.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/man/extract_tibble.Rd | 9 REDCapTidieR-0.3.0/REDCapTidieR/man/extract_tibbles.Rd | 11 REDCapTidieR-0.3.0/REDCapTidieR/man/format-helpers.Rd | 7 REDCapTidieR-0.3.0/REDCapTidieR/man/format_error_val.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/man/get_credentials.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/man/link_arms.Rd | 5 REDCapTidieR-0.3.0/REDCapTidieR/man/make_labelled.Rd | 10 REDCapTidieR-0.3.0/REDCapTidieR/man/parse_labels.Rd | 5 REDCapTidieR-0.3.0/REDCapTidieR/man/remove_empty_rows.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/man/resolve_formatter.Rd | 4 REDCapTidieR-0.3.0/REDCapTidieR/man/superheroes_supertbl.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/man/try_redcapr.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/create-httptest-mock.R | 55 - REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-352902-POST.json |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-36bd61-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-535b2e-POST.csv | 24 REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-551ace-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-5620fa-POST.json | 20 REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-62c34a-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-82f254-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-892595-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-95ddd0-POST.R |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-cc5db2-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-d09168-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-ed7aa8-POST.json |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/helper.R | 28 REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/test-bind_tibbles.R | 9 REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/test-checks.R | 117 +- REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/test-clean_redcap.R | 4 REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/test-clean_redcap_long.R | 8 REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/test-deprecated.R | 8 REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/test-extract_tibble.R | 9 REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/test-labelled.R | 46 - REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/test-lint-free.R |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/test-read_redcap.R | 225 +++- REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/test-utils.R | 198 +++- REDCapTidieR-0.3.0/REDCapTidieR/vignettes/REDCapTidieR.Rmd | 28 REDCapTidieR-0.3.0/REDCapTidieR/vignettes/diving_deeper.Rmd | 118 +- REDCapTidieR-0.3.0/REDCapTidieR/vignettes/diving_deeper/0/my.institution.edu/redcap/api-535b2e-POST.csv | 24 REDCapTidieR-0.3.0/REDCapTidieR/vignettes/diving_deeper/0/my.institution.edu/redcap/api-5620fa-POST.json | 20 REDCapTidieR-0.3.0/REDCapTidieR/vignettes/diving_deeper/0/my.institution.edu/redcap/api-90501e-POST.csv | 2 REDCapTidieR-0.3.0/REDCapTidieR/vignettes/glossary.Rmd | 118 +- 87 files changed, 2338 insertions(+), 1036 deletions(-)
Title: Analyze and Create Elegant Directed Acyclic Graphs
Description: Tidy, analyze, and plot directed acyclic graphs (DAGs).
'ggdag' is built on top of 'dagitty', an R package that uses the
'DAGitty' web tool (<http://dagitty.net>) for creating and analyzing
DAGs. 'ggdag' makes it easy to tidy and plot 'dagitty' objects using
'ggplot2' and 'ggraph', as well as common analytic and graphical
functions, such as determining adjustment sets and node relationships.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between ggdag versions 0.2.7 dated 2022-10-29 and 0.2.8 dated 2023-03-17
DESCRIPTION | 11 MD5 | 57 ++--- NAMESPACE | 1 NEWS.md | 4 R/StatsandGeoms.R | 1 R/colliders.R | 6 R/dag_labels.R | 2 R/dplyr_methods.R | 8 R/equivalence.R | 4 R/layouts.R |only R/paths.R | 2 R/tidy_dag.R | 14 - R/utils.R | 14 + build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/bias-structures.html | 26 +- inst/doc/intro-to-dags.html | 20 - inst/doc/intro-to-ggdag.html | 4 man/as.data.frame.tidy_dagitty.Rd | 2 man/dplyr.Rd | 2 man/ggdag-package.Rd | 1 man/time_ordered_coords.Rd |only tests/testthat/_snaps/equivalence/ggdag-equivalent-class-plots-labels.svg | 72 +++--- tests/testthat/_snaps/geom_dag/geom-dag-edges-arc-is-arcy.svg | 110 ++++----- tests/testthat/_snaps/geom_dag/geom-dag-edges-diagonal-is-arcy.svg | 112 +++++----- tests/testthat/_snaps/geom_dag/geom-dag-edges-fan-is-fany.svg | 112 +++++----- tests/testthat/_snaps/geom_dag/geom-dag-edges-link-is-straight.svg | 112 +++++----- tests/testthat/_snaps/geom_dag/geom-dag-label-repel-repels-labels.svg | 12 - tests/testthat/_snaps/geom_dag/geom-dag-text-repel-repels-names.svg | 6 tests/testthat/_snaps/layouts |only tests/testthat/test-layouts.R |only 31 files changed, 377 insertions(+), 340 deletions(-)
Title: High Performance CommonMark and Github Markdown Rendering in R
Description: The CommonMark specification defines a rationalized version of markdown
syntax. This package uses the 'cmark' reference implementation for converting
markdown text into various formats including html, latex and groff man. In
addition it exposes the markdown parse tree in xml format. Also includes opt-in
support for GFM extensions including tables, autolinks, and strikethrough text.
Author: Jeroen Ooms [aut, cre] ,
John MacFarlane [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between commonmark versions 1.8.1 dated 2022-10-14 and 1.9.0 dated 2023-03-17
commonmark-1.8.1/commonmark/src/extensions/cmark-gfm-extensions_export.h |only commonmark-1.9.0/commonmark/DESCRIPTION | 12 commonmark-1.9.0/commonmark/MD5 | 49 commonmark-1.9.0/commonmark/NEWS | 4 commonmark-1.9.0/commonmark/R/markdown.R | 25 commonmark-1.9.0/commonmark/man/commonmark.Rd | 8 commonmark-1.9.0/commonmark/src/cmark/arena.c | 15 commonmark-1.9.0/commonmark/src/cmark/blocks.c | 14 commonmark-1.9.0/commonmark/src/cmark/cmark-gfm-extension_api.h | 1 commonmark-1.9.0/commonmark/src/cmark/cmark-gfm.h | 5 commonmark-1.9.0/commonmark/src/cmark/html.c | 18 commonmark-1.9.0/commonmark/src/cmark/inlines.c | 188 commonmark-1.9.0/commonmark/src/cmark/map.c | 15 commonmark-1.9.0/commonmark/src/cmark/map.h | 7 commonmark-1.9.0/commonmark/src/cmark/node.c | 30 commonmark-1.9.0/commonmark/src/cmark/node.h | 28 commonmark-1.9.0/commonmark/src/cmark/parser.h | 1 commonmark-1.9.0/commonmark/src/cmark/references.c | 1 commonmark-1.9.0/commonmark/src/cmark/scanners.c |24290 +++++----- commonmark-1.9.0/commonmark/src/cmark/scanners.h | 8 commonmark-1.9.0/commonmark/src/extensions/autolink.c | 362 commonmark-1.9.0/commonmark/src/extensions/cmark-gfm-core-extensions.h | 22 commonmark-1.9.0/commonmark/src/extensions/strikethrough.c | 2 commonmark-1.9.0/commonmark/src/extensions/table.c | 94 commonmark-1.9.0/commonmark/src/init.c | 4 commonmark-1.9.0/commonmark/src/wrapper.c | 6 26 files changed, 14516 insertions(+), 10693 deletions(-)
Title: Fitting and Simulating Mixtures of Watson Distributions
Description: Tools for fitting and simulating mixtures of Watson distributions.
The random sampling scheme of the package offers two sampling
algorithms that are based of the results of Sablica, Hornik and Leydold (2022)
<https://research.wu.ac.at/en/publications/random-sampling-from-the-watson-distribution>.
What is more, the package offers a smart tool to combine these two methods,
and based on the selected parameters, it approximates the relative sampling
speed for both methods and picks the faster one. In addition, the package
offers a fitting function for the mixtures of Watson distribution, that
uses the expectation-maximization (EM) algorithm. Special features are
the possibility to use multiple variants of the E-step and M-step,
sparse matrices for the data representation and state of the art methods
for numerical evaluation of needed special functions using the results of
Sablica and Hornik (2022) <https://www.ams.org/journals/mcom/2022-91-334/S0025-5718-2021-03690-X/>.
Author: Lukas Sablica [aut, cre] ,
Kurt Hornik [aut] ,
Josef Leydold [aut] ,
Gerard Jungman [ctb, cph] ,
Brian Gough [ctb, cph]
Maintainer: Lukas Sablica <lsablica@wu.ac.at>
Diff between watson versions 0.2 dated 2023-03-09 and 0.3 dated 2023-03-17
DESCRIPTION | 13 +++++++------ MD5 | 6 +++--- NEWS.md | 6 ++++++ src/wat6.cpp | 4 ++-- 4 files changed, 18 insertions(+), 11 deletions(-)
Title: Interpretable Subgroups Identification Through Ensemble Learning
of Causal Rules
Description: Provides an interpretable identification of subgroups with
heterogeneous causal effect. The heterogeneous subgroups are
discovered through ensemble learning of causal rules. Causal rules are
highly interpretable if-then statement that recursively partition the
features space into heterogeneous subgroups. A small number of
significant causal rules are selected through Stability Selection to
control for family-wise error rate in the finite sample setting. It
proposes various estimation methods for the conditional causal effects
for each discovered causal rule. It is highly flexible and multiple
causal estimands and imputation methods are implemented. Lee, K.,
Bargagli-Stoffi, F. J., & Dominici, F. (2020). Causal rule ensemble:
Interpretable inference of heterogeneous treatment effects. arXiv
preprint <arXiv:2009.09036>.
Author: Naeem Khoshnevis [aut, cre] ,
Daniela Maria Garcia [aut] ,
Riccardo Cadei [aut] ,
Kwonsang Lee [aut] ,
Falco Joannes Bargagli Stoffi [aut]
Maintainer: Naeem Khoshnevis <nkhoshnevis@g.harvard.edu>
Diff between CRE versions 0.2.0 dated 2023-01-19 and 0.2.1 dated 2023-03-17
DESCRIPTION | 8 MD5 | 106 NEWS.md | 17 R/CRE_package.R | 35 R/check_hyper_params.R | 6 R/check_input_data.R | 10 R/check_method_params.R | 20 R/cre.R | 74 R/discover_rules.R | 3 R/estimate_cate.R | 85 R/estimate_ite.R | 4 R/estimate_ite_tlearner.R | 14 R/estimate_ite_tpoisson.R | 14 R/estimate_ite_xlearner.R | 14 R/extract_rules.R | 36 R/filter_correlated_rules.R | 4 R/filter_extreme_rules.R | 5 R/filter_irrelevant_rules.R | 15 R/generate_cre_dataset.R | 8 R/generate_rules.R | 9 R/generate_rules_matrix.R | 8 R/honest_splitting.R | 3 R/plot.R | 32 R/print.R | 5 R/select_rules.R | 16 R/utils.R | 2 README.md | 54 build/vignette.rds |binary inst/doc/CRE.Rmd | 6 inst/doc/CRE.html | 6 inst/doc/Testing-the-Package.Rmd | 2 man/CRE-package.Rd | 36 man/cre.Rd | 35 man/estimate_cate.Rd | 6 man/estimate_ite_tpoisson.Rd | 4 man/filter_correlated_rules.Rd | 4 man/filter_extreme_rules.Rd | 5 man/filter_irrelevant_rules.Rd | 9 man/generate_rules.Rd | 6 man/generate_rules_matrix.Rd | 7 tests/testthat/CRE.log | 2707 +++++++++++++++++++++++++ tests/testthat/test-estimate_cate.R | 12 tests/testthat/test-estimate_ite.R | 24 tests/testthat/test-estimate_ite_xlearner.R | 10 tests/testthat/test-extract_effect_modifiers.R | 2 tests/testthat/test-extract_rules.R | 1 tests/testthat/test-filter_correlated_rules.R | 5 tests/testthat/test-filter_extreme_rules.R | 6 tests/testthat/test-generate_cre_dataset.R | 2 tests/testthat/test-generate_rules.R | 8 tests/testthat/test-generate_rules_matrix.R | 6 tests/testthat/test-interpret_rules.R | 3 vignettes/CRE.Rmd | 6 vignettes/Testing-the-Package.Rmd | 2 54 files changed, 3172 insertions(+), 355 deletions(-)
Title: Interactively Filter SNP Datasets
Description: Is designed to interactively and reproducibly visualize and filter SNP
(single-nucleotide polymorphism) datasets. This R-based implementation of SNP
and genotype filters facilitates
an interactive and iterative SNP filtering pipeline, which can be documented
reproducibly via Rmarkdown. 'SNPfiltR' contains functions for visualizing
various quality and missing data metrics for a SNP dataset, and then filtering
the dataset based on user specified cutoffs.
All functions take 'vcfR' objects as input, which can easily be
generated by reading standard vcf (variant call format) files into R using
the R package 'vcfR' (Knaus and Grünwald) (<doi:10.1111/1755-0998.12549>).
Each 'SNPfiltR' function can return a newly filtered vcfR object, which can then be
written to a local directory in standard vcf format using the 'vcfR' package,
for downstream population genetic and phylogenetic analyses.
Author: Devon DeRaad [aut, cre]
Maintainer: Devon DeRaad <devonderaad@gmail.com>
Diff between SNPfiltR versions 1.0.0 dated 2022-04-15 and 1.0.1 dated 2023-03-17
DESCRIPTION | 8 MD5 | 30 +- R/assess_missing_data_pca.R | 23 + R/assess_missing_data_tsne.R | 29 +- R/distance_thin.R | 2 R/filter_allele_balance.R | 36 ++ R/filter_biallelic.R | 16 - R/hard_filter.R | 2 R/max_depth.R | 2 R/min_mac.R | 17 + R/missing_by_sample.R | 22 - R/missing_by_snp.R | 7 R/zzz.R | 2 README.md | 30 +- build/vignette.rds |binary inst/doc/reproducible-vignette.html | 507 ++++++++++++++++++++++++++++-------- 16 files changed, 544 insertions(+), 189 deletions(-)
Title: Random Number Generation Functions for 'rxode2'
Description: Provides the random number generation (in parallel) needed for
'rxode2' (Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) and 'nlmixr2'
(Fidler et al (2019) <doi:10.1002/psp4.12445>).
This split will reduce computational burden of recompiling 'rxode2'.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [ctb],
Bill Denney [ctb]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2random versions 2.0.9 dated 2022-10-11 and 2.0.10 dated 2023-03-17
rxode2random-2.0.10/rxode2random/DESCRIPTION | 23 - rxode2random-2.0.10/rxode2random/MD5 | 32 - rxode2random-2.0.10/rxode2random/NAMESPACE | 5 rxode2random-2.0.10/rxode2random/NEWS.md | 4 rxode2random-2.0.10/rxode2random/R/RcppExports.R | 4 rxode2random-2.0.10/rxode2random/R/reexports.R |only rxode2random-2.0.10/rxode2random/R/rxode2random_md5.R | 2 rxode2random-2.0.10/rxode2random/R/rxrandom.R | 43 ++ rxode2random-2.0.10/rxode2random/README.md | 22 - rxode2random-2.0.10/rxode2random/build/partial.rdb |binary rxode2random-2.0.10/rxode2random/man/dot-expandPars.Rd |only rxode2random-2.0.10/rxode2random/man/reexports.Rd |only rxode2random-2.0.10/rxode2random/src/Makevars.in | 5 rxode2random-2.0.10/rxode2random/src/RcppExports.cpp | 11 rxode2random-2.0.10/rxode2random/src/checkmate.cpp | 27 + rxode2random-2.0.10/rxode2random/src/cvPost.cpp | 365 +++++++++-------- rxode2random-2.0.10/rxode2random/src/init.c | 40 + rxode2random-2.0.10/rxode2random/src/seed.cpp | 2 rxode2random-2.0.9/rxode2random/src/fast_factor.cpp |only 19 files changed, 365 insertions(+), 220 deletions(-)
Title: Functions to Work with 'incidence2' Objects
Description: Provides functions to work with 'incidence2' objects, including a
simplified interface for trend fitting and peak estimation. This package is
part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for
outbreak analysis (<https://www.reconverse.org/).
Author: Tim Taylor [aut, cre] ,
Thibaut Jombart [aut]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between i2extras versions 0.1.2 dated 2021-07-08 and 0.2.1 dated 2023-03-17
i2extras-0.1.2/i2extras/R/fit_model.R |only i2extras-0.1.2/i2extras/R/plot_rolling_average.R |only i2extras-0.1.2/i2extras/R/unnest.R |only i2extras-0.1.2/i2extras/man/NA_counts_.Rd |only i2extras-0.1.2/i2extras/man/brms_model.Rd |only i2extras-0.1.2/i2extras/man/fit_model.Rd |only i2extras-0.1.2/i2extras/man/glm_model.Rd |only i2extras-0.1.2/i2extras/man/glm_nb_model.Rd |only i2extras-0.1.2/i2extras/man/incidence.Rd |only i2extras-0.1.2/i2extras/man/lm_model.Rd |only i2extras-0.1.2/i2extras/man/plot.incidence2_rolling.Rd |only i2extras-0.2.1/i2extras/DESCRIPTION | 13 i2extras-0.2.1/i2extras/MD5 | 91 - i2extras-0.2.1/i2extras/NAMESPACE | 41 i2extras-0.2.1/i2extras/NEWS.md | 29 i2extras-0.2.1/i2extras/R/add_rolling_average.R | 185 +-- i2extras-0.2.1/i2extras/R/bootstrap.R | 150 +- i2extras-0.2.1/i2extras/R/compat_trending.R |only i2extras-0.2.1/i2extras/R/defunct.R |only i2extras-0.2.1/i2extras/R/dplyr.R | 2 i2extras-0.2.1/i2extras/R/estimate_peak.R | 258 ++-- i2extras-0.2.1/i2extras/R/find_peak.R | 71 - i2extras-0.2.1/i2extras/R/fit_curve.R | 218 +--- i2extras-0.2.1/i2extras/R/flag_low_counts.R | 132 +- i2extras-0.2.1/i2extras/R/growth_rate.R | 72 - i2extras-0.2.1/i2extras/R/imports.R |only i2extras-0.2.1/i2extras/R/is_okerr.R | 134 +- i2extras-0.2.1/i2extras/R/plot_fit.R | 175 +-- i2extras-0.2.1/i2extras/R/reexports.R | 31 i2extras-0.2.1/i2extras/R/utils.R | 72 - i2extras-0.2.1/i2extras/README.md | 40 i2extras-0.2.1/i2extras/build/vignette.rds |binary i2extras-0.2.1/i2extras/inst/doc/fitting_epicurves.R | 25 i2extras-0.2.1/i2extras/inst/doc/fitting_epicurves.Rmd | 25 i2extras-0.2.1/i2extras/inst/doc/fitting_epicurves.html | 537 ++++------ i2extras-0.2.1/i2extras/inst/doc/peak_estimation.R | 6 i2extras-0.2.1/i2extras/inst/doc/peak_estimation.Rmd | 6 i2extras-0.2.1/i2extras/inst/doc/peak_estimation.html | 304 ++--- i2extras-0.2.1/i2extras/man/add_rolling_average.Rd | 80 - i2extras-0.2.1/i2extras/man/bootstrap.Rd | 40 i2extras-0.2.1/i2extras/man/estimate_peak.Rd | 57 - i2extras-0.2.1/i2extras/man/find_peak.Rd | 30 i2extras-0.2.1/i2extras/man/fit_curve.Rd | 26 i2extras-0.2.1/i2extras/man/flag_low_counts.Rd | 2 i2extras-0.2.1/i2extras/man/growth_rate.Rd | 2 i2extras-0.2.1/i2extras/man/i2extras-defunct.Rd |only i2extras-0.2.1/i2extras/man/is_okerr.Rd | 8 i2extras-0.2.1/i2extras/man/plot.incidence2_fit.Rd | 22 i2extras-0.2.1/i2extras/man/unnest.Rd | 6 i2extras-0.2.1/i2extras/tests/testthat/test-bootstrap.R | 148 +- i2extras-0.2.1/i2extras/tests/testthat/test-flag_low_counts.R | 87 - i2extras-0.2.1/i2extras/tests/testthat/test-rolling_average.R | 12 i2extras-0.2.1/i2extras/vignettes/fitting_epicurves.Rmd | 25 i2extras-0.2.1/i2extras/vignettes/peak_estimation.Rmd | 6 54 files changed, 1517 insertions(+), 1651 deletions(-)
Title: HTML Widgets for R
Description: A framework for creating HTML widgets that render in various
contexts including the R console, 'R Markdown' documents, and 'Shiny'
web applications.
Author: Ramnath Vaidyanathan [aut, cph],
Yihui Xie [aut],
JJ Allaire [aut],
Joe Cheng [aut],
Carson Sievert [aut, cre] ,
Kenton Russell [aut, cph],
Ellis Hughes [ctb],
RStudio [cph]
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between htmlwidgets versions 1.6.1 dated 2023-01-06 and 1.6.2 dated 2023-03-17
DESCRIPTION | 8 - MD5 | 14 +- NEWS.md | 5 R/htmlwidgets.R | 2 inst/doc/develop_advanced.R | 2 inst/doc/develop_advanced.html | 142 +++++++++++------------ inst/doc/develop_intro.html | 246 ++++++++++++++++++++--------------------- inst/doc/develop_sizing.html | 136 +++++++++++----------- 8 files changed, 280 insertions(+), 275 deletions(-)
Title: Interface Between 'GRASS' Geographical Information System and
'R'
Description: An interface between the 'GRASS' geographical information system ('GIS') and 'R', based on starting 'R' from within the 'GRASS' 'GIS' environment, or running a free-standing 'R' session in a temporary 'GRASS' location; the package provides facilities for using all 'GRASS' commands from the 'R' command line. The original interface package for 'GRASS 5' (2000-2010) is described in Bivand (2000) <doi:10.1016/S0098-3004(00)00057-1> and Bivand (2001) <https://www.r-project.org/conferences/DSC-2001/Proceedings/Bivand.pdf>. This was succeeded by 'spgrass6' for 'GRASS 6' (2006-2016) and 'rgrass7' for 'GRASS 7' (2015-present). The 'rgrass' package modernizes the interface for 'GRASS 8' while still permitting the use of 'GRASS 7'.
Author: Roger Bivand [cre, aut] ,
Rainer Krug [ctb] ,
Robin Lovelace [ctb] ,
Markus Neteler [ctb] ,
Sebastian Jeworutzki [ctb] ,
Floris Vanderhaeghe [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgrass versions 0.3-6 dated 2022-10-11 and 0.3-8 dated 2023-03-17
DESCRIPTION | 8 - MD5 | 32 +++--- NEWS.md | 12 ++ R/initGRASS.R | 75 ++++++++++++-- R/rast_link.R | 30 +++++ build/vignette.rds |binary inst/doc/coerce.R | 71 +++++++++++-- inst/doc/coerce.Rmd | 121 ++++++++++++++++++----- inst/doc/coerce.html | 263 ++++++++++++++++++++++++++++++++++++++++++--------- inst/doc/use.Rmd | 24 +++- inst/doc/use.html | 17 +-- man/execGRASS.Rd | 1 man/readRAST.Rd | 1 man/rgrass.Rd | 1 vignettes/coerce.Rmd | 121 ++++++++++++++++++----- vignettes/refs.bib | 8 + vignettes/use.Rmd | 24 +++- 17 files changed, 644 insertions(+), 165 deletions(-)
Title: Split, Combine and Compress PDF Files
Description: Content-preserving transformations transformations of PDF files such
as split, combine, and compress. This package interfaces directly to the 'qpdf'
C++ API and does not require any command line utilities. Note that 'qpdf' does
not read actual content from PDF files: to extract text and data you need the
'pdftools' package.
Author: Jeroen Ooms [aut, cre] ,
Ben Raymond [ctb],
Jay Berkenbilt [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between qpdf versions 1.3.1 dated 2023-03-15 and 1.3.2 dated 2023-03-17
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ configure | 2 +- 4 files changed, 10 insertions(+), 7 deletions(-)
Title: Calculating Bilateral and Multilateral Price Indexes
Description: Preparing a scanner data set for price dynamics calculations (data selecting, data classification, data matching, data filtering). Computing bilateral and multilateral indexes. For details on these methods see: Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>, Białek (2019) <doi:10.2478/jos-2019-0014> or Białek (2020) <doi:10.2478/jos-2020-0037>.
Author: Jacek Bialek [aut, cre]
Maintainer: Jacek Bialek <jacek.bialek@uni.lodz.pl>
Diff between PriceIndices versions 0.1.5 dated 2023-03-03 and 0.1.6 dated 2023-03-17
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 8 ++++++++ R/f_data_processing.R | 28 ++++++++++++++++++++-------- R/f_general.R | 2 +- R/f_internal.R | 4 ++-- man/data_imputing.Rd | 2 +- man/elasticity_fig.Rd | 4 ++-- man/price_indices.Rd | 2 +- 9 files changed, 46 insertions(+), 26 deletions(-)
Title: Parse and Manipulate Research Patient Data Registry ('RPDR')
Text Queries
Description: Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R.
The package also provides helper functions to manipulate data and execute common procedures
such as finding the closest radiological exams considering a given timepoint, or creating a DICOM header database
from the downloaded images. All functionalities are parallelized for fast and efficient analyses.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <mkolossvary@mgh.harvard.edu>
Diff between parseRPDR versions 0.2.4 dated 2023-01-29 and 1.0.0 dated 2023-03-17
parseRPDR-0.2.4/parseRPDR/R/progress_bar.R |only parseRPDR-0.2.4/parseRPDR/man/progress_bar.Rd |only parseRPDR-1.0.0/parseRPDR/DESCRIPTION | 19 parseRPDR-1.0.0/parseRPDR/MD5 | 187 ++++-- parseRPDR-1.0.0/parseRPDR/NAMESPACE | 9 parseRPDR-1.0.0/parseRPDR/NEWS.md | 27 parseRPDR-1.0.0/parseRPDR/R/all_ids_mi2b2.R | 8 parseRPDR-1.0.0/parseRPDR/R/convert_dia.R | 19 parseRPDR-1.0.0/parseRPDR/R/convert_enc.R | 15 parseRPDR-1.0.0/parseRPDR/R/convert_med.R | 19 parseRPDR-1.0.0/parseRPDR/R/convert_notes.R | 9 parseRPDR-1.0.0/parseRPDR/R/convert_phy.R | 21 parseRPDR-1.0.0/parseRPDR/R/convert_prc.R | 23 parseRPDR-1.0.0/parseRPDR/R/convert_rfv.R | 21 parseRPDR-1.0.0/parseRPDR/R/create_img_db.R | 2 parseRPDR-1.0.0/parseRPDR/R/dcm_db.R | 6 parseRPDR-1.0.0/parseRPDR/R/find_exam.R | 4 parseRPDR-1.0.0/parseRPDR/R/find_exam_bm.R | 16 parseRPDR-1.0.0/parseRPDR/R/find_exam_ram.R | 7 parseRPDR-1.0.0/parseRPDR/R/load_all.R | 291 +--------- parseRPDR-1.0.0/parseRPDR/R/load_all_data.R |only parseRPDR-1.0.0/parseRPDR/R/load_bib.R |only parseRPDR-1.0.0/parseRPDR/R/load_con.R | 50 - parseRPDR-1.0.0/parseRPDR/R/load_dem.R | 56 - parseRPDR-1.0.0/parseRPDR/R/load_dem_old.R | 32 - parseRPDR-1.0.0/parseRPDR/R/load_dia.R | 26 parseRPDR-1.0.0/parseRPDR/R/load_enc.R | 100 +-- parseRPDR-1.0.0/parseRPDR/R/load_lab.R | 42 - parseRPDR-1.0.0/parseRPDR/R/load_lno.R | 16 parseRPDR-1.0.0/parseRPDR/R/load_mcm.R |only parseRPDR-1.0.0/parseRPDR/R/load_med.R | 32 - parseRPDR-1.0.0/parseRPDR/R/load_mic.R |only parseRPDR-1.0.0/parseRPDR/R/load_mrn.R | 4 parseRPDR-1.0.0/parseRPDR/R/load_notes.R | 10 parseRPDR-1.0.0/parseRPDR/R/load_phy.R | 28 parseRPDR-1.0.0/parseRPDR/R/load_prc.R | 32 - parseRPDR-1.0.0/parseRPDR/R/load_prv.R |only parseRPDR-1.0.0/parseRPDR/R/load_ptd.R |only parseRPDR-1.0.0/parseRPDR/R/load_rdt.R | 22 parseRPDR-1.0.0/parseRPDR/R/load_rfv.R | 16 parseRPDR-1.0.0/parseRPDR/R/load_trn.R |only parseRPDR-1.0.0/parseRPDR/R/parse_ids.R | 7 parseRPDR-1.0.0/parseRPDR/R/pretty_mrn.R | 7 parseRPDR-1.0.0/parseRPDR/R/pretty_numbers.R | 2 parseRPDR-1.0.0/parseRPDR/R/pretty_text.R | 12 parseRPDR-1.0.0/parseRPDR/README.md | 252 +++----- parseRPDR-1.0.0/parseRPDR/inst/CITATION | 6 parseRPDR-1.0.0/parseRPDR/man/all_ids_mi2b2.Rd | 8 parseRPDR-1.0.0/parseRPDR/man/convert_dia.Rd | 11 parseRPDR-1.0.0/parseRPDR/man/convert_enc.Rd | 7 parseRPDR-1.0.0/parseRPDR/man/convert_med.Rd | 11 parseRPDR-1.0.0/parseRPDR/man/convert_notes.Rd | 3 parseRPDR-1.0.0/parseRPDR/man/convert_phy.Rd | 13 parseRPDR-1.0.0/parseRPDR/man/convert_prc.Rd | 15 parseRPDR-1.0.0/parseRPDR/man/convert_rfv.Rd | 13 parseRPDR-1.0.0/parseRPDR/man/create_img_db.Rd | 2 parseRPDR-1.0.0/parseRPDR/man/find_exam.Rd | 6 parseRPDR-1.0.0/parseRPDR/man/find_exam_bm.Rd | 3 parseRPDR-1.0.0/parseRPDR/man/find_exam_ram.Rd | 3 parseRPDR-1.0.0/parseRPDR/man/load_all.Rd | 74 +- parseRPDR-1.0.0/parseRPDR/man/load_all_data.Rd |only parseRPDR-1.0.0/parseRPDR/man/load_bib.Rd |only parseRPDR-1.0.0/parseRPDR/man/load_con.Rd | 15 parseRPDR-1.0.0/parseRPDR/man/load_dem.Rd | 26 parseRPDR-1.0.0/parseRPDR/man/load_dem_old.Rd | 14 parseRPDR-1.0.0/parseRPDR/man/load_dia.Rd | 8 parseRPDR-1.0.0/parseRPDR/man/load_enc.Rd | 48 - parseRPDR-1.0.0/parseRPDR/man/load_lab.Rd | 8 parseRPDR-1.0.0/parseRPDR/man/load_lno.Rd | 2 parseRPDR-1.0.0/parseRPDR/man/load_mcm.Rd |only parseRPDR-1.0.0/parseRPDR/man/load_med.Rd | 10 parseRPDR-1.0.0/parseRPDR/man/load_mic.Rd |only parseRPDR-1.0.0/parseRPDR/man/load_phy.Rd | 8 parseRPDR-1.0.0/parseRPDR/man/load_prc.Rd | 10 parseRPDR-1.0.0/parseRPDR/man/load_prv.Rd |only parseRPDR-1.0.0/parseRPDR/man/load_ptd.Rd |only parseRPDR-1.0.0/parseRPDR/man/load_rdt.Rd | 4 parseRPDR-1.0.0/parseRPDR/man/load_rfv.Rd | 2 parseRPDR-1.0.0/parseRPDR/man/load_trn.Rd |only parseRPDR-1.0.0/parseRPDR/man/parse_ids.Rd | 3 parseRPDR-1.0.0/parseRPDR/man/pretty_mrn.Rd | 3 parseRPDR-1.0.0/parseRPDR/man/pretty_numbers.Rd | 1 parseRPDR-1.0.0/parseRPDR/man/pretty_text.Rd | 15 parseRPDR-1.0.0/parseRPDR/tests/covr.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat.R | 2 parseRPDR-1.0.0/parseRPDR/tests/testthat/test-all_ids_mi2b2.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-convert_dia.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-convert_enc.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-convert_lab.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-convert_med.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-convert_notes.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-convert_phy.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-convert_prc.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-convert_rfv.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-create_img_db.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-find_exam.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_all.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_all_data.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_bib.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_con.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_dem.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_dem_old.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_dia.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_enc.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_lab.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_lno.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_mcm.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_med.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_mic.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_mrn.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_notes.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_phy.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_prc.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_prv.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_ptd.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_rdt.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_rfv.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-load_trn.R |only parseRPDR-1.0.0/parseRPDR/tests/testthat/test-pretty_mrn.R | 15 parseRPDR-1.0.0/parseRPDR/tests/testthat/test-pretty_text.R |only 120 files changed, 800 insertions(+), 1018 deletions(-)
Title: Procedures for Automated Interpolation
Description: Geostatistical interpolation has traditionally been done by manually fitting a variogram and then interpolating. Here, we introduce classes and methods that can do this interpolation automatically. Pebesma et al (2010) gives an overview of the methods behind and possible usage <doi:10.1016/j.cageo.2010.03.019>.
Author: Edzer Pebesma [aut],
Jon Olav Skoien [aut, cre],
Olivier Baume [ctb],
A Chorti [ctb],
Dionisis Hristopulos [ctb],
Hannes Kazianka [ctb],
Stepahnie Melles [ctb],
Giannis Spiliopoulos [ctb]
Maintainer: Jon Olav Skoien <jon.skoien@gmail.com>
Diff between intamap versions 1.4-16 dated 2022-04-07 and 1.5-6 dated 2023-03-17
DESCRIPTION | 38 +++++++++----- MD5 | 20 +++---- NAMESPACE | 2 R/aggregation.R | 4 - R/default.R | 14 +++-- R/init.R | 129 ++++++++++++++++++++++++++++++++---------------- R/interpolate.R | 93 +++++++++++++++++++++------------- R/spCopEstim.R | 14 ++--- inst/CITATION | 12 ++-- man/interpolate.Rd | 5 + man/methodParameters.Rd | 1 11 files changed, 209 insertions(+), 123 deletions(-)
Title: Arrange 'Grobs' in Tables
Description: Tools to make it easier to work with "tables" of
'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a
grid along with a list of grobs and their placement in the grid. Further the
package makes it easy to manipulate and combine 'gtable' objects so that
complex compositions can be built up sequentially.
Author: Hadley Wickham [aut],
Thomas Lin Pedersen [aut, cre],
Posit Software, PBC [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between gtable versions 0.3.1 dated 2022-08-31 and 0.3.2 dated 2023-03-17
gtable-0.3.1/gtable/R/add-grob.r |only gtable-0.3.1/gtable/R/add-rows-cols.r |only gtable-0.3.1/gtable/R/add-space.r |only gtable-0.3.1/gtable/R/align.r |only gtable-0.3.1/gtable/R/filter.r |only gtable-0.3.1/gtable/R/grid.r |only gtable-0.3.1/gtable/R/gtable-layouts.r |only gtable-0.3.1/gtable/R/gtable.r |only gtable-0.3.1/gtable/R/new-data-frame.r |only gtable-0.3.1/gtable/R/padding.r |only gtable-0.3.1/gtable/R/rbind-cbind.r |only gtable-0.3.1/gtable/R/trim.r |only gtable-0.3.1/gtable/R/utils.r |only gtable-0.3.1/gtable/R/z.r |only gtable-0.3.1/gtable/tests/testthat/helper-grobs.r |only gtable-0.3.1/gtable/tests/testthat/helper-units.r |only gtable-0.3.1/gtable/tests/testthat/test-bind.r |only gtable-0.3.1/gtable/tests/testthat/test-layout.r |only gtable-0.3.1/gtable/tests/testthat/test-subsetting.r |only gtable-0.3.1/gtable/tests/testthat/test-z-order.r |only gtable-0.3.2/gtable/DESCRIPTION | 40 +-- gtable-0.3.2/gtable/LICENSE | 2 gtable-0.3.2/gtable/MD5 | 118 +++++---- gtable-0.3.2/gtable/NAMESPACE | 3 gtable-0.3.2/gtable/NEWS.md | 4 gtable-0.3.2/gtable/R/add-grob.R |only gtable-0.3.2/gtable/R/add-rows-cols.R |only gtable-0.3.2/gtable/R/add-space.R |only gtable-0.3.2/gtable/R/align.R |only gtable-0.3.2/gtable/R/filter.R |only gtable-0.3.2/gtable/R/grid.R |only gtable-0.3.2/gtable/R/gtable-layouts.R |only gtable-0.3.2/gtable/R/gtable-package.R | 12 gtable-0.3.2/gtable/R/gtable.R |only gtable-0.3.2/gtable/R/import-standalone-obj-type.R |only gtable-0.3.2/gtable/R/import-standalone-types-check.R |only gtable-0.3.2/gtable/R/new-data-frame.R |only gtable-0.3.2/gtable/R/padding.R |only gtable-0.3.2/gtable/R/rbind-cbind.R |only gtable-0.3.2/gtable/R/trim.R |only gtable-0.3.2/gtable/R/utils.R |only gtable-0.3.2/gtable/R/z.R |only gtable-0.3.2/gtable/R/zzz.R |only gtable-0.3.2/gtable/README.md | 14 - gtable-0.3.2/gtable/build/vignette.rds |binary gtable-0.3.2/gtable/inst/doc/profiling.html | 128 ++++------ gtable-0.3.2/gtable/man/bind.Rd | 2 gtable-0.3.2/gtable/man/figures/lifecycle-archived.svg |only gtable-0.3.2/gtable/man/figures/lifecycle-defunct.svg |only gtable-0.3.2/gtable/man/figures/lifecycle-deprecated.svg |only gtable-0.3.2/gtable/man/figures/lifecycle-experimental.svg |only gtable-0.3.2/gtable/man/figures/lifecycle-maturing.svg |only gtable-0.3.2/gtable/man/figures/lifecycle-questioning.svg |only gtable-0.3.2/gtable/man/figures/lifecycle-soft-deprecated.svg |only gtable-0.3.2/gtable/man/figures/lifecycle-stable.svg |only gtable-0.3.2/gtable/man/figures/lifecycle-superseded.svg |only gtable-0.3.2/gtable/man/figures/logo.png |binary gtable-0.3.2/gtable/man/gtable-package.Rd | 14 - gtable-0.3.2/gtable/man/gtable.Rd | 2 gtable-0.3.2/gtable/man/gtable_add_cols.Rd | 2 gtable-0.3.2/gtable/man/gtable_add_grob.Rd | 2 gtable-0.3.2/gtable/man/gtable_add_padding.Rd | 2 gtable-0.3.2/gtable/man/gtable_add_rows.Rd | 2 gtable-0.3.2/gtable/man/gtable_add_space.Rd | 2 gtable-0.3.2/gtable/man/gtable_col.Rd | 2 gtable-0.3.2/gtable/man/gtable_filter.Rd | 2 gtable-0.3.2/gtable/man/gtable_height.Rd | 2 gtable-0.3.2/gtable/man/gtable_matrix.Rd | 2 gtable-0.3.2/gtable/man/gtable_row.Rd | 2 gtable-0.3.2/gtable/man/gtable_show_layout.Rd | 2 gtable-0.3.2/gtable/man/gtable_spacer.Rd | 2 gtable-0.3.2/gtable/man/gtable_trim.Rd | 2 gtable-0.3.2/gtable/man/gtable_width.Rd | 2 gtable-0.3.2/gtable/man/is.gtable.Rd | 2 gtable-0.3.2/gtable/man/print.gtable.Rd | 2 gtable-0.3.2/gtable/tests/testthat.R | 8 gtable-0.3.2/gtable/tests/testthat/Rplots.pdf |binary gtable-0.3.2/gtable/tests/testthat/helper-grobs.R |only gtable-0.3.2/gtable/tests/testthat/helper-units.R |only gtable-0.3.2/gtable/tests/testthat/test-bind.R |only gtable-0.3.2/gtable/tests/testthat/test-filter.R | 2 gtable-0.3.2/gtable/tests/testthat/test-layout.R |only gtable-0.3.2/gtable/tests/testthat/test-new-data-frame.R | 4 gtable-0.3.2/gtable/tests/testthat/test-subsetting.R |only gtable-0.3.2/gtable/tests/testthat/test-trim.R | 2 gtable-0.3.2/gtable/tests/testthat/test-z-order.R |only 86 files changed, 205 insertions(+), 182 deletions(-)
Title: Sensitivities of Prices of Financial Options and Implied
Volatilites
Description: Methods to calculate sensitivities of financial option prices for
European, Asian, American and Digital Options options in the Black Scholes
model, and in more general jump diffusion models. A shiny app to interactively
view plot the results is included. Furthermore, methods to
compute implied volatilities are provided for a wide range of option types and
custom payoff functions. Classical formulas are implemented for European
options in the Black Scholes Model, as is presented in Hull, J. C. (2017).
Options, Futures, and Other Derivatives, Global Edition (9th Edition). Pearson.
In the case of Asian options, Malliavin Monte Carlo Greeks are implemented, see
Hudde, A. & Rüschendorf, L. (2016). European and Asian Greeks for exponential
Lévy processes. <arXiv:1603.00920>. For American options, the Binomial Tree
Method is implemented, as is presented in Hull, J. C. (2017).
Author: Anselm Hudde [aut, cre]
Maintainer: Anselm Hudde <anselmhudde@gmx.de>
Diff between greeks versions 1.0.0 dated 2023-02-16 and 1.1.0 dated 2023-03-17
DESCRIPTION | 6 - MD5 | 44 ++++--- NAMESPACE | 1 NEWS.md | 16 +- R/BS_Geometric_Asian_Greeks.R |only R/Greeks.R | 11 + R/Greeks_UI.R | 94 +++++++++++++--- R/Malliavin_Asian_Greeks.R | 15 ++ README.md | 5 build/vignette.rds |binary inst/doc/using_greeks.R | 48 -------- inst/doc/using_greeks.Rmd | 97 +++++++---------- inst/doc/using_greeks.html | 192 ++++++++-------------------------- man/BS_European_Greeks.Rd | 136 ++++++++++++------------ man/BS_Geometric_Asian_Greeks.Rd |only man/BS_Implied_Volatility.Rd | 134 +++++++++++------------ man/Binomial_American_Greeks.Rd | 154 +++++++++++++-------------- man/Greeks.Rd | 150 +++++++++++++------------- man/Greeks_UI.Rd | 22 +-- man/Implied_Volatility.Rd | 148 +++++++++++++------------- man/Malliavin_Asian_Greeks.Rd | 218 +++++++++++++++++++-------------------- man/Malliavin_European_Greeks.Rd | 174 +++++++++++++++---------------- man/pipe.Rd | 40 +++---- vignettes/using_greeks.Rmd | 97 +++++++---------- 24 files changed, 855 insertions(+), 947 deletions(-)
Title: Linear and Non-Linear AUC for Discounting Data
Description: Area under the curve (AUC; Myerson et al., 2001) <doi:10.1901/jeab.2001.76-235>
is a popular measure used in discounting research. Although the calculation of
AUC is standardized, there are differences in AUC based on some assumptions.
For example, Myerson et al. (2001) <doi:10.1901/jeab.2001.76-235>
assumed that (with delay discounting data) a researcher would impute an
indifference point at zero delay equal to the value of the larger, later outcome.
However, this practice is not clearly followed. This imputed zero-delay indifference
point plays an important role in log and ordinal versions of AUC.
Ordinal and log versions of AUC are described by Borges et al. (2016)<doi:10.1002/jeab.219>.
The package can calculate all three versions of AUC [and includes a new version: IHS(AUC)],
impute indifference points when x = 0, calculate ordinal AUC in the case of Halton
sampling of x-values, and account for probability discounting AUC.
Author: Jonathan E. Friedel [aut, cre]
Maintainer: Jonathan E. Friedel <jfriedel@georgiasouthern.edu>
Diff between discAUC versions 0.4.0 dated 2021-06-02 and 1.0.0 dated 2023-03-17
discAUC-0.4.0/discAUC/inst/doc/my-vignette.R |only discAUC-0.4.0/discAUC/inst/doc/my-vignette.Rmd |only discAUC-0.4.0/discAUC/inst/doc/my-vignette.html |only discAUC-0.4.0/discAUC/vignettes/my-vignette.Rmd |only discAUC-1.0.0/discAUC/DESCRIPTION | 10 discAUC-1.0.0/discAUC/MD5 | 30 - discAUC-1.0.0/discAUC/R/AUC.R | 387 +++++++------ discAUC-1.0.0/discAUC/R/AUC_add_zeros.R | 282 +++++---- discAUC-1.0.0/discAUC/R/AUC_ordinals.R | 503 +++++++++-------- discAUC-1.0.0/discAUC/R/AUC_prep.R | 256 ++++---- discAUC-1.0.0/discAUC/R/log_AUC.R | 333 +++++------ discAUC-1.0.0/discAUC/README.md | 95 +-- discAUC-1.0.0/discAUC/build/partial.rdb |binary discAUC-1.0.0/discAUC/build/vignette.rds |binary discAUC-1.0.0/discAUC/inst/doc/discAUC_vignette.R |only discAUC-1.0.0/discAUC/inst/doc/discAUC_vignette.Rmd |only discAUC-1.0.0/discAUC/inst/doc/discAUC_vignette.html |only discAUC-1.0.0/discAUC/man/AUC.Rd | 10 discAUC-1.0.0/discAUC/tests/testthat/test-AUC.R | 557 +++++++++++-------- discAUC-1.0.0/discAUC/vignettes/discAUC_vignette.Rmd |only 20 files changed, 1341 insertions(+), 1122 deletions(-)
Title: Define and Work with Parameter Spaces for Complex Algorithms
Description: Define parameter spaces, constraints and
dependencies for arbitrary algorithms, to program on such spaces. Also
includes statistical designs and random samplers. Objects are
implemented as 'R6' classes.
Author: Michel Lang [cre, aut] ,
Bernd Bischl [aut] ,
Jakob Richter [aut] ,
Xudong Sun [aut] ,
Martin Binder [aut],
Marc Becker [ctb]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between paradox versions 0.11.0 dated 2022-11-21 and 0.11.1 dated 2023-03-17
DESCRIPTION | 8 ++++---- MD5 | 35 ++++++++++++++++++----------------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/Condition.R | 3 ++- R/Design.R | 3 ++- R/Param.R | 3 ++- R/ParamSet.R | 16 ++++++++-------- R/Sampler.R | 3 ++- R/ps.R | 13 +++++++++++++ R/to_tune.R | 2 +- README.md | 3 +-- man/Condition.Rd | 9 ++++++++- man/Design.Rd | 9 ++++++++- man/Param.Rd | 9 ++++++++- man/ParamSet.Rd | 9 ++++++++- man/Sampler.Rd | 9 ++++++++- man/psc.Rd |only tests/testthat/test_ParamSet.R | 17 +++++++++++++++++ 19 files changed, 115 insertions(+), 41 deletions(-)
Title: Machine Learning in R - Next Generation
Description: Efficient, object-oriented programming on the
building blocks of machine learning. Provides 'R6' objects for tasks,
learners, resamplings, and measures. The package is geared towards
scalability and larger datasets by supporting parallelization and
out-of-memory data-backends like databases. While 'mlr3' focuses on
the core computational operations, add-on packages provide additional
functionality.
Author: Michel Lang [cre, aut] ,
Bernd Bischl [aut] ,
Jakob Richter [aut] ,
Patrick Schratz [aut] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [aut],
Florian Pfisterer [aut] ,
Raphael Sonabend [aut] ,
Lennart Schneider [c [...truncated...]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3 versions 0.14.1 dated 2022-11-02 and 0.15.0 dated 2023-03-17
mlr3-0.14.1/mlr3/man/mlr_measures_debug.Rd |only mlr3-0.15.0/mlr3/DESCRIPTION | 8 mlr3-0.15.0/mlr3/MD5 | 110 +++---- mlr3-0.15.0/mlr3/NAMESPACE | 6 mlr3-0.15.0/mlr3/NEWS.md | 8 mlr3-0.15.0/mlr3/R/BenchmarkResult.R | 18 + mlr3-0.15.0/mlr3/R/DataBackend.R | 3 mlr3-0.15.0/mlr3/R/HotstartStack.R | 3 mlr3-0.15.0/mlr3/R/Learner.R | 7 mlr3-0.15.0/mlr3/R/LearnerClassifDebug.R | 2 mlr3-0.15.0/mlr3/R/Measure.R | 5 mlr3-0.15.0/mlr3/R/MeasureAIC.R | 4 mlr3-0.15.0/mlr3/R/MeasureBIC.R | 2 mlr3-0.15.0/mlr3/R/MeasureDebug.R | 18 - mlr3-0.15.0/mlr3/R/MeasureOOBError.R | 2 mlr3-0.15.0/mlr3/R/MeasureSelectedFeatures.R | 2 mlr3-0.15.0/mlr3/R/MeasureSimilarity.R | 2 mlr3-0.15.0/mlr3/R/MeasureSimple.R | 2 mlr3-0.15.0/mlr3/R/Prediction.R | 3 mlr3-0.15.0/mlr3/R/ResampleResult.R | 29 +- mlr3-0.15.0/mlr3/R/Resampling.R | 7 mlr3-0.15.0/mlr3/R/Task.R | 16 - mlr3-0.15.0/mlr3/R/TaskGenerator.R | 3 mlr3-0.15.0/mlr3/R/TaskGeneratorMoons.R | 2 mlr3-0.15.0/mlr3/R/as_result_data.R | 7 mlr3-0.15.0/mlr3/R/as_task_classif.R | 10 mlr3-0.15.0/mlr3/R/as_task_regr.R | 10 mlr3-0.15.0/mlr3/R/as_task_unsupervised.R | 4 mlr3-0.15.0/mlr3/R/benchmark_grid.R | 12 mlr3-0.15.0/mlr3/R/helper.R | 13 mlr3-0.15.0/mlr3/README.md | 241 ++++++++--------- mlr3-0.15.0/mlr3/build/partial.rdb |binary mlr3-0.15.0/mlr3/man/BenchmarkResult.Rd | 9 mlr3-0.15.0/mlr3/man/DataBackend.Rd | 9 mlr3-0.15.0/mlr3/man/HotstartStack.Rd | 9 mlr3-0.15.0/mlr3/man/Learner.Rd | 9 mlr3-0.15.0/mlr3/man/Measure.Rd | 11 mlr3-0.15.0/mlr3/man/MeasureClassif.Rd | 2 mlr3-0.15.0/mlr3/man/MeasureRegr.Rd | 2 mlr3-0.15.0/mlr3/man/MeasureSimilarity.Rd | 4 mlr3-0.15.0/mlr3/man/Prediction.Rd | 9 mlr3-0.15.0/mlr3/man/ResampleResult.Rd | 9 mlr3-0.15.0/mlr3/man/Resampling.Rd | 9 mlr3-0.15.0/mlr3/man/Task.Rd | 12 mlr3-0.15.0/mlr3/man/TaskGenerator.Rd | 9 mlr3-0.15.0/mlr3/man/as_result_data.Rd | 4 mlr3-0.15.0/mlr3/man/mlr_measures.Rd | 2 mlr3-0.15.0/mlr3/man/mlr_measures_aic.Rd | 4 mlr3-0.15.0/mlr3/man/mlr_measures_bic.Rd | 4 mlr3-0.15.0/mlr3/man/mlr_measures_classif.costs.Rd | 2 mlr3-0.15.0/mlr3/man/mlr_measures_debug_classif.Rd |only mlr3-0.15.0/mlr3/man/mlr_measures_elapsed_time.Rd | 2 mlr3-0.15.0/mlr3/man/mlr_measures_oob_error.Rd | 4 mlr3-0.15.0/mlr3/man/mlr_measures_selected_features.Rd | 4 mlr3-0.15.0/mlr3/tests/testthat/test_Learner.R | 6 mlr3-0.15.0/mlr3/tests/testthat/test_Task.R | 6 mlr3-0.15.0/mlr3/tests/testthat/test_lgr.R | 2 57 files changed, 437 insertions(+), 265 deletions(-)
Title: Compute, Handle and Plot Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise
incidence from dated events for a defined time interval. Dates can be
provided in various standard formats. The class 'incidence2' is used to store
computed incidence and can be easily manipulated, subsetted, and plotted.
This package is part of the RECON (<https://www.repidemicsconsortium.org/>)
toolkit for outbreak analysis (<https://www.reconverse.org>).
Author: Tim Taylor [aut, cre] ,
Thibaut Jombart [ctb]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between incidence2 versions 1.2.3 dated 2021-11-07 and 2.0.0 dated 2023-03-17
incidence2-1.2.3/incidence2/R/build_incidence.R |only incidence2-1.2.3/incidence2/R/complete_counts.R |only incidence2-1.2.3/incidence2/R/conversion.R |only incidence2-1.2.3/incidence2/R/dplyr.R |only incidence2-1.2.3/incidence2/R/make_grate.R |only incidence2-1.2.3/incidence2/R/new_incidence.R |only incidence2-1.2.3/incidence2/R/print.R |only incidence2-1.2.3/incidence2/inst/doc/Introduction.R |only incidence2-1.2.3/incidence2/inst/doc/Introduction.Rmd |only incidence2-1.2.3/incidence2/inst/doc/Introduction.html |only incidence2-1.2.3/incidence2/inst/doc/alternative_date_groupings.R |only incidence2-1.2.3/incidence2/inst/doc/alternative_date_groupings.Rmd |only incidence2-1.2.3/incidence2/inst/doc/alternative_date_groupings.html |only incidence2-1.2.3/incidence2/inst/doc/customizing_incidence_plots.R |only incidence2-1.2.3/incidence2/inst/doc/customizing_incidence_plots.Rmd |only incidence2-1.2.3/incidence2/inst/doc/customizing_incidence_plots.html |only incidence2-1.2.3/incidence2/inst/doc/handling_incidence_objects.R |only incidence2-1.2.3/incidence2/inst/doc/handling_incidence_objects.Rmd |only incidence2-1.2.3/incidence2/inst/doc/handling_incidence_objects.html |only incidence2-1.2.3/incidence2/man/as.data.frame.incidence_df.Rd |only incidence2-1.2.3/incidence2/man/as_tibble.Rd |only incidence2-1.2.3/incidence2/man/build_incidence.Rd |only incidence2-1.2.3/incidence2/man/complete_counts.Rd |only incidence2-1.2.3/incidence2/man/deprecated-accessors.Rd |only incidence2-1.2.3/incidence2/man/new_incidence.Rd |only incidence2-1.2.3/incidence2/man/print_incidence.Rd |only incidence2-1.2.3/incidence2/man/summary.incidence_df.Rd |only incidence2-1.2.3/incidence2/tests/testthat/_snaps |only incidence2-1.2.3/incidence2/tests/testthat/test-accessors.R |only incidence2-1.2.3/incidence2/tests/testthat/test-complete_counts.R |only incidence2-1.2.3/incidence2/tests/testthat/test-conversions.R |only incidence2-1.2.3/incidence2/tests/testthat/test-dplyr.R |only incidence2-1.2.3/incidence2/tests/testthat/test-palettes.R |only incidence2-1.2.3/incidence2/tests/testthat/test-plots.R |only incidence2-1.2.3/incidence2/vignettes/Introduction.Rmd |only incidence2-1.2.3/incidence2/vignettes/alternative_date_groupings.Rmd |only incidence2-1.2.3/incidence2/vignettes/customizing_incidence_plots.Rmd |only incidence2-1.2.3/incidence2/vignettes/handling_incidence_objects.Rmd |only incidence2-2.0.0/incidence2/DESCRIPTION | 32 incidence2-2.0.0/incidence2/MD5 | 128 - incidence2-2.0.0/incidence2/NAMESPACE | 109 - incidence2-2.0.0/incidence2/NEWS.md | 39 incidence2-2.0.0/incidence2/R/accessors.R | 309 -- incidence2-2.0.0/incidence2/R/coercion.R |only incidence2-2.0.0/incidence2/R/complete_dates.R |only incidence2-2.0.0/incidence2/R/cumulate.R | 78 incidence2-2.0.0/incidence2/R/data.R | 8 incidence2-2.0.0/incidence2/R/defunct.R |only incidence2-2.0.0/incidence2/R/incidence.R | 578 +++-- incidence2-2.0.0/incidence2/R/incidence2-package.R | 16 incidence2-2.0.0/incidence2/R/keep.R | 257 +- incidence2-2.0.0/incidence2/R/palettes.R | 136 - incidence2-2.0.0/incidence2/R/plot.R | 598 +---- incidence2-2.0.0/incidence2/R/printing.R |only incidence2-2.0.0/incidence2/R/regroup.R | 109 - incidence2-2.0.0/incidence2/R/s3_register.R |only incidence2-2.0.0/incidence2/R/subset.R |only incidence2-2.0.0/incidence2/R/summary.R | 89 incidence2-2.0.0/incidence2/R/utils.R | 51 incidence2-2.0.0/incidence2/R/zzz.R | 8 incidence2-2.0.0/incidence2/README.md |only incidence2-2.0.0/incidence2/build/vignette.rds |binary incidence2-2.0.0/incidence2/data/covidregionaldataUK.rda |binary incidence2-2.0.0/incidence2/inst/doc/incidence2.R |only incidence2-2.0.0/incidence2/inst/doc/incidence2.Rmd |only incidence2-2.0.0/incidence2/inst/doc/incidence2.html |only incidence2-2.0.0/incidence2/man/accessors.Rd | 145 - incidence2-2.0.0/incidence2/man/as.data.frame.incidence2.Rd |only incidence2-2.0.0/incidence2/man/as_incidence.Rd |only incidence2-2.0.0/incidence2/man/complete_dates.Rd |only incidence2-2.0.0/incidence2/man/covidregionaldataUK.Rd | 6 incidence2-2.0.0/incidence2/man/cumulate.Rd | 31 incidence2-2.0.0/incidence2/man/incidence.Rd | 252 +- incidence2-2.0.0/incidence2/man/incidence2-defunct.Rd |only incidence2-2.0.0/incidence2/man/incidence2-package.Rd | 8 incidence2-2.0.0/incidence2/man/keep.Rd | 80 incidence2-2.0.0/incidence2/man/palettes.Rd | 7 incidence2-2.0.0/incidence2/man/plot.incidence2.Rd | 166 - incidence2-2.0.0/incidence2/man/print.incidence2.Rd |only incidence2-2.0.0/incidence2/man/regroup.Rd | 32 incidence2-2.0.0/incidence2/man/s3_register.Rd |only incidence2-2.0.0/incidence2/man/summary.incidence2.Rd |only incidence2-2.0.0/incidence2/tests/testthat.R | 8 incidence2-2.0.0/incidence2/tests/testthat/test-coercion.R |only incidence2-2.0.0/incidence2/tests/testthat/test-complete_dates.R |only incidence2-2.0.0/incidence2/tests/testthat/test-cumulate.R | 70 incidence2-2.0.0/incidence2/tests/testthat/test-incidence.R | 1062 ++++------ incidence2-2.0.0/incidence2/tests/testthat/test-keep.R | 49 incidence2-2.0.0/incidence2/tests/testthat/test-regroup.R | 44 incidence2-2.0.0/incidence2/tests/testthat/test-subsetting_and_dplyr.R |only incidence2-2.0.0/incidence2/vignettes/incidence2.Rmd |only 91 files changed, 1966 insertions(+), 2539 deletions(-)
Title: A General Framework for Combining Ecosystem Models
Description: Fit and sample from the ensemble model described in Spence et al (2018): "A general framework for combining ecosystem models"<https://onlinelibrary.wiley.com/doi/abs/10.1111/faf.12310>.
Author: Michael A. Spence [aut, cre] ,
James A. Martindale [aut] ,
Michael J. Thomson [aut]
Maintainer: Michael A. Spence <michael.spence@cefas.gov.uk>
Diff between EcoEnsemble versions 1.0.1 dated 2022-11-04 and 1.0.2 dated 2023-03-17
EcoEnsemble-1.0.1/EcoEnsemble/src/EcoEnsemble_types.h |only EcoEnsemble-1.0.1/EcoEnsemble/src/Makevars |only EcoEnsemble-1.0.1/EcoEnsemble/src/Makevars.win |only EcoEnsemble-1.0.1/EcoEnsemble/src/stanExports_ensemble_model.cc |only EcoEnsemble-1.0.1/EcoEnsemble/src/stanExports_ensemble_model.h |only EcoEnsemble-1.0.1/EcoEnsemble/src/stanExports_ensemble_model_hierarchical.cc |only EcoEnsemble-1.0.1/EcoEnsemble/src/stanExports_ensemble_model_hierarchical.h |only EcoEnsemble-1.0.1/EcoEnsemble/src/stanExports_ensemble_prior.cc |only EcoEnsemble-1.0.1/EcoEnsemble/src/stanExports_ensemble_prior.h |only EcoEnsemble-1.0.1/EcoEnsemble/src/stanExports_ensemble_prior_hierarchical.cc |only EcoEnsemble-1.0.1/EcoEnsemble/src/stanExports_ensemble_prior_hierarchical.h |only EcoEnsemble-1.0.2/EcoEnsemble/DESCRIPTION | 6 +-- EcoEnsemble-1.0.2/EcoEnsemble/MD5 | 17 +--------- EcoEnsemble-1.0.2/EcoEnsemble/inst/doc/EcoEnsemble.html | 4 +- EcoEnsemble-1.0.2/EcoEnsemble/inst/doc/ExploringPriors.html | 12 +++---- 15 files changed, 14 insertions(+), 25 deletions(-)
Title: R Client Library for CloudOS
Description: The 'CloudOS' client library for R makes it easy to interact with
CloudOS in the R environment for analysis.
Author: Sangram Keshari Sahu [aut, cre],
Ilya Levantis [aut],
Henry Stewart [aut],
Lifebit Biotech Ltd. [cph]
Maintainer: Sangram Keshari Sahu <sangram@lifebit.ai>
Diff between cloudos versions 0.3.0 dated 2022-02-09 and 0.4.0 dated 2023-03-17
cloudos-0.3.0/cloudos/man/dot-get_search_json.Rd |only cloudos-0.3.0/cloudos/man/dot-v1_query_to_v2.Rd |only cloudos-0.4.0/cloudos/DESCRIPTION | 8 ++++---- cloudos-0.4.0/cloudos/MD5 | 14 ++++++-------- cloudos-0.4.0/cloudos/NEWS.md | 5 +++++ cloudos-0.4.0/cloudos/R/cb_class.R | 10 +++++----- cloudos-0.4.0/cloudos/R/cb_cohort_extract.R | 2 +- cloudos-0.4.0/cloudos/R/cb_json.R | 4 ++-- cloudos-0.4.0/cloudos/R/cloudos_env.R | 2 +- 9 files changed, 24 insertions(+), 21 deletions(-)
Title: Interface to 'Kusto'/'Azure Data Explorer'
Description: An interface to 'Azure Data Explorer', also known as 'Kusto', a fast, highly scalable data exploration service from Microsoft: <https://azure.microsoft.com/en-us/products/data-explorer/>. Includes 'DBI' and 'dplyr' interfaces, with the latter modelled after the 'dbplyr' package, whereby queries are translated from R into the native 'KQL' query language and executed lazily. On the admin side, the package extends the object framework provided by 'AzureRMR' to support creation and deletion of databases, and management of database principals. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut],
Alex Kyllo [aut, cre],
dbplyr development team [cph] ,
Microsoft [cph]
Maintainer: Alex Kyllo <jekyllo@microsoft.com>
Diff between AzureKusto versions 1.1.1 dated 2023-01-25 and 1.1.2 dated 2023-03-17
DESCRIPTION | 16 - MD5 | 28 +- NAMESPACE | 6 NEWS.md | 5 R/AzureKusto.R | 2 R/tbl.R | 352 +++++++++++++++++------------------ man/collect.tbl_kusto.Rd | 4 man/compute.tbl_kusto.Rd | 8 man/join.Rd | 44 ++-- man/nest.tbl_kusto_abstract.Rd | 2 man/reexports.Rd | 2 man/show_query.tbl_kusto_abstract.Rd | 6 man/summarise.Rd | 8 man/tbl_kusto_abstract.Rd | 4 man/unnest.tbl_kusto_abstract.Rd | 39 +++ 15 files changed, 296 insertions(+), 230 deletions(-)
Title: 'anndata' for R
Description: A 'reticulate' wrapper for the Python package 'anndata'.
Provides a scalable way of keeping track of data and learned
annotations. Used to read from and write to the h5ad file format.
Author: Philipp Angerer [ccp] ,
Alex Wolf [ccp] ,
Isaac Virshup [ccp] ,
Sergei Rybakov [ccp] ,
Robrecht Cannoodt [aut, cre, cph]
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between anndata versions 0.7.5.5 dated 2022-09-23 and 0.7.5.6 dated 2023-03-17
DESCRIPTION | 8 +-- MD5 | 24 ++++----- NEWS.md | 4 + R/class_anndata.R | 26 ++++----- R/class_layers.R | 6 +- R/class_raw.R | 6 +- R/equals_helpers.R | 4 - build/vignette.rds |binary inst/doc/getting_started.R | 112 +++++++++++++++++++++--------------------- inst/doc/getting_started.html | 102 +++++--------------------------------- inst/doc/scanpy_demo.R | 32 ++++++------ inst/doc/scanpy_demo.html | 17 +----- man/all.equal.Rd | 9 ++- 13 files changed, 136 insertions(+), 214 deletions(-)
Title: 'tidyverse' Methods and 'ggplot2' Helpers for 'terra' Objects
Description: Extension of the 'tidyverse' for 'SpatRaster' and
'SpatVector' objects of the 'terra' package. It includes also new
'geom_' functions that provide a convenient way of visualizing 'terra'
objects with 'ggplot2'.
Author: Diego Hernangomez [aut, cre, cph]
,
Dewey Dunnington [ctb] ,
ggplot2 authors [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between tidyterra versions 0.3.2 dated 2023-02-24 and 0.4.0 dated 2023-03-17
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Title: Seeded-LDA for Topic Modeling
Description: Implements the seeded-LDA model (Lu, Ott, Cardie & Tsou 2010) <doi:10.1109/ICDMW.2011.125> using the quanteda package and the GibbsLDA++ library for semisupervised topic modeling.
Seeded-LDA allows users to pre-define topics with keywords to perform theory-driven analysis of textual data in social sciences and humanities (Watanabe & Zhou 2020) <doi:10.1177/0894439320907027>.
Author: Kohei Watanabe [aut, cre, cph],
Phan Xuan-Hieu [aut, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between seededlda versions 0.8.2 dated 2022-10-09 and 0.8.3 dated 2023-03-17
DESCRIPTION | 9 MD5 | 49 +-- NAMESPACE | 44 +- NEWS.md | 72 ++-- R/RcppExports.R | 14 R/data.R |only R/lda.R | 198 ++++++------ R/predict.R | 64 ++-- R/seededlda.R | 433 ++++++++++++++-------------- R/utils.R | 134 ++++---- data |only man/data_corpus_moviereviews.Rd |only man/divergence.Rd | 74 ++-- man/predict.textmodel_lda.Rd | 183 +++++------- man/print.textmodel_lda.Rd | 34 +- man/sizes.Rd | 28 - man/terms.Rd | 38 +- man/textmodel_seededlda.Rd | 265 ++++++++--------- man/topics.Rd | 48 +-- src/Makevars | 1 src/Makevars.win | 1 tests/data/topics.yml | 10 tests/testthat.R | 6 tests/testthat/test-internal.R | 156 +++++----- tests/testthat/test-textmodel_lda.R | 457 ++++++++++++++---------------- tests/testthat/test-textmodel_seededlda.R | 363 +++++++++++------------ tests/testthat/test-utils.R | 159 +++++----- 27 files changed, 1420 insertions(+), 1420 deletions(-)
Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating
grouped date classes. This package is part of the RECON
(<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Author: Tim Taylor [aut, cre]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between grates versions 0.3.1 dated 2022-11-10 and 1.0.0 dated 2023-03-17
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Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre],
Panagiotis Skintzos [aut],
Mike Bostock [cph] ,
Speros Kokenes [cph] ,
Eric Shull [cph] ,
Lee Thomason [cph] ,
Vladimir Agafonkin [cph] ,
Eric Book [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.8.6 dated 2023-01-22 and 0.8.7 dated 2023-03-17
DESCRIPTION | 8 +++---- MD5 | 22 ++++++++++---------- NAMESPACE | 1 NEWS.md | 11 ++++++++++ R/geom_dotplot_interactive.R | 3 +- R/ggiraph.R | 47 +++++++++++++++++++------------------------ R/girafe.R | 7 +++++- man/ggiraph.Rd | 28 +++---------------------- man/ggiraphOutput.Rd | 4 +++ man/girafe.Rd | 2 - man/renderggiraph.Rd | 4 +++ src/Makevars | 2 - 12 files changed, 69 insertions(+), 70 deletions(-)
Title: Species Distribution and Abundance Modelling at High
Spatio-Temporal Resolution
Description: A collection of novel tools for generating species distribution and abundance models (SDM) that are dynamic through both space and time. These highly flexible functions incorporate spatial and temporal aspects across key SDM stages; including when cleaning and filtering species occurrence data, generating pseudo-absence records, assessing and correcting sampling biases and autocorrelation, extracting explanatory variables and projecting distribution patterns. Throughout, functions utilise Google Earth Engine and Google Drive to minimise the computing power and storage demands associated with species distribution modelling at high spatio-temporal resolution.
Author: Rachel Dobson [aut, cre, ctb] ,
Andy J. Challinor [aut, ctb] ,
Robert A. Cheke [aut, ctb] ,
Stewart Jennings [aut, ctb] ,
Stephen G. Willis [aut, ctb] ,
Martin Dallimer [aut, ctb]
Maintainer: Rachel Dobson <eerdo@leeds.ac.uk>
Diff between dynamicSDM versions 1.1 dated 2023-02-27 and 1.2 dated 2023-03-17
dynamicSDM-1.1/dynamicSDM/man/figures/dynamicSDM_1.0.pdf |only dynamicSDM-1.2/dynamicSDM/DESCRIPTION | 6 dynamicSDM-1.2/dynamicSDM/MD5 | 48 dynamicSDM-1.2/dynamicSDM/R/dynamic_proj_GIF.R | 22 dynamicSDM-1.2/dynamicSDM/R/spatiotemp_check.R | 2 dynamicSDM-1.2/dynamicSDM/README.md | 2 dynamicSDM-1.2/dynamicSDM/build/partial.rdb |binary dynamicSDM-1.2/dynamicSDM/inst/doc/vignette1_response_data.R | 32 dynamicSDM-1.2/dynamicSDM/inst/doc/vignette1_response_data.Rmd | 736 +++++----- dynamicSDM-1.2/dynamicSDM/inst/doc/vignette1_response_data.html | 503 +++--- dynamicSDM-1.2/dynamicSDM/inst/doc/vignette2_explanatory_data.R | 48 dynamicSDM-1.2/dynamicSDM/inst/doc/vignette2_explanatory_data.Rmd | 444 +++--- dynamicSDM-1.2/dynamicSDM/inst/doc/vignette2_explanatory_data.html | 78 - dynamicSDM-1.2/dynamicSDM/inst/doc/vignette3_modelling.R | 2 dynamicSDM-1.2/dynamicSDM/inst/doc/vignette3_modelling.Rmd | 14 dynamicSDM-1.2/dynamicSDM/inst/doc/vignette3_modelling.html | 214 +- dynamicSDM-1.2/dynamicSDM/inst/doc/vignette4_projecting.R | 104 - dynamicSDM-1.2/dynamicSDM/inst/doc/vignette4_projecting.Rmd | 515 +++--- dynamicSDM-1.2/dynamicSDM/inst/doc/vignette4_projecting.html | 93 - dynamicSDM-1.2/dynamicSDM/man/dynamic_proj_GIF.Rd | 22 dynamicSDM-1.2/dynamicSDM/man/figures/dynamicSDM_1.2.pdf |only dynamicSDM-1.2/dynamicSDM/man/spatiotemp_check.Rd | 2 dynamicSDM-1.2/dynamicSDM/vignettes/vignette1_response_data.Rmd | 736 +++++----- dynamicSDM-1.2/dynamicSDM/vignettes/vignette2_explanatory_data.Rmd | 444 +++--- dynamicSDM-1.2/dynamicSDM/vignettes/vignette3_modelling.Rmd | 14 dynamicSDM-1.2/dynamicSDM/vignettes/vignette4_projecting.Rmd | 515 +++--- 26 files changed, 2347 insertions(+), 2249 deletions(-)
Title: Lightweight Well-Known Geometry Parsing
Description: Provides a minimal R and C++ API for parsing
well-known binary and well-known text representation of
geometries to and from R-native formats.
Well-known binary is compact
and fast to parse; well-known text is human-readable
and is useful for writing tests. These formats are
useful in R only if the information they contain can be
accessed in R, for which high-performance functions
are provided here.
Author: Dewey Dunnington [aut, cre] ,
Edzer Pebesma [aut]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between wk versions 0.7.1 dated 2022-12-09 and 0.7.2 dated 2023-03-17
DESCRIPTION | 9 ++++----- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ src/Makevars | 1 - src/internal/buffered-reader.hpp | 2 +- src/make-collection-filter.c | 2 +- src/make-linestring-filter.c | 2 +- src/make-polygon-filter.c | 2 +- src/wkt-writer.cpp | 14 +++++++------- tests/testthat/Rplots.pdf |binary 10 files changed, 28 insertions(+), 26 deletions(-)
Title: Contains the Trained 'text2sdg' Ensemble Model Data
Description: This is a companion package for the 'text2sdg' package. It contains the trained ensemble models needed by the 'detect_sdg' function from the 'text2sdg' package. See Wulff, Meier and Mata (2023) <arXiv:2301.11353> and Meier, Wulff and Mata (2021) <arXiv:2110.05856> for reference.
Author: Dominik S. Meier [aut, cre]
Maintainer: Dominik S. Meier <dominikmeier@outlook.com>
Diff between text2sdgData versions 0.1.0 dated 2023-03-16 and 0.1.1 dated 2023-03-17
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 3 +++ data/ensembles.rda |binary 4 files changed, 10 insertions(+), 7 deletions(-)
Title: Efficient Plotting of Large-Sized Data
Description: A tool to plot data with a large sample size using 'shiny' and 'plotly'.
Relatively small samples are obtained from the original data using a specific algorithm.
The samples are updated according to a user-defined x range.
Jonas Van Der Donckt, Jeroen Van Der Donckt, Emiel Deprost (2022) <https://github.com/predict-idlab/plotly-resampler>.
Author: Junta Tagusari [aut, cre, cph],
Jonas Van Der Donckt [cph],
Jeroen Van Der Donckt [cph],
Emiel Deprost [cph]
Maintainer: Junta Tagusari <j.tagusari@eng.hokudai.ac.jp>
Diff between shinyHugePlot versions 0.2.2 dated 2022-11-30 and 0.2.3 dated 2023-03-17
DESCRIPTION | 6 +-- MD5 | 14 +++---- NEWS.md | 6 +++ R/downsampler.R | 30 ++++++++++++++- R/plotly_build_light.R | 96 +++++++++++++++++++++++++++---------------------- R/shiny_hugeplot.R | 6 ++- README.md | 30 ++++++++++++++- man/downsampler.Rd | 31 +++++++++++++++ 8 files changed, 161 insertions(+), 58 deletions(-)
Title: Load Data From 'Yandex Direct'
Description: Load data from 'Yandex Direct' API V5
<https://yandex.ru/dev/direct/doc/dg/concepts/about-docpage> into R.
Provide function for load lists of campaings, ads, keywords and other
objects from 'Yandex Direct' account. Also you can load statistic from
API 'Reports Service' <https://yandex.ru/dev/direct/doc/reports/reports-docpage>.
And allows keyword bids management.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between ryandexdirect versions 3.6.0 dated 2020-06-09 and 3.6.2 dated 2023-03-17
DESCRIPTION | 13 MD5 | 61 - NEWS.md | 18 R/date_ranges.R | 22 R/tech_block.R | 2 R/yadirGetAdGroups.R | 21 R/yadirGetAds.R | 123 ++- R/yadirGetCampaign.R | 2 R/yadirGetDictionary.R | 18 README.md | 199 ----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/yandex-direct-auth.html | 393 +++++++--- inst/doc/yandex-direct-cost-data.Rmd | 10 inst/doc/yandex-direct-cost-data.html | 234 +++--- inst/doc/yandex-direct-get-statistic.Rmd | 8 inst/doc/yandex-direct-get-statistic.html | 822 ++++++++++++++++------ inst/doc/yandex-direct-get-wordstat-forecast.html | 459 +++++++----- inst/doc/yandex-direct-keyword-bids.Rmd | 12 inst/doc/yandex-direct-keyword-bids.html | 641 ++++++++++------- inst/ryandexdirect.png |only man/yadirGetAdGroups.Rd | 9 man/yadirGetAds.Rd | 4 man/yadirGetCampaign.Rd | 4 man/yadirGetDictionary.Rd | 2 man/yadirGetKeyWordsBids.Rd | 4 man/yadirGetReport.Rd | 4 man/yadirSetAutoKeyWordsBids.Rd | 4 man/yadirSetKeyWordsBids.Rd | 4 vignettes/yandex-direct-cost-data.Rmd | 10 vignettes/yandex-direct-get-statistic.Rmd | 8 vignettes/yandex-direct-keyword-bids.Rmd | 12 32 files changed, 2001 insertions(+), 1122 deletions(-)
Title: Concordances for 'R Markdown'
Description: Supports concordances in 'R Markdown'
documents. This currently allows the original source
location in the '.Rmd' file of errors detected by 'HTML tidy'
to be found more easily, and potentially allows forward
and reverse search in 'HTML' and 'LaTeX' documents
produced from 'R Markdown'. The 'LaTeX' support
has been included in the most recent development
version of the 'patchDVI' package.
Author: Duncan Murdoch [aut, cre],
Heather Turner [ctb]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between RmdConcord versions 0.1.4 dated 2023-03-13 and 0.1.6 dated 2023-03-17
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 7 +++++++ R/rdevel.R | 36 ++++++++++++++++++++++++++++++++++-- man/processConcordance.Rd | 6 ++++++ 5 files changed, 54 insertions(+), 9 deletions(-)
Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager
from Facebook Marketing API into R. For more details see official documents by Facebook
Marketing API <https://developers.facebook.com/docs/marketing-apis/>.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rfacebookstat versions 2.8.0 dated 2022-09-29 and 2.8.1 dated 2023-03-17
DESCRIPTION | 6 - MD5 | 22 ++--- NEWS.md | 4 R/fbGetAdAccountUsers.R | 14 --- R/fbGetBusinessUserAdAccounts.R | 6 - R/fbGetCatalogs.R | 9 -- build/partial.rdb |binary build/vignette.rds |binary inst/doc/rfacebookstat-authorization.html | 124 +++++++++++++++-------------- inst/doc/rfacebookstat-cost-data.html | 124 +++++++++++++++-------------- inst/doc/rfacebookstat-get-statistics.html | 124 +++++++++++++++-------------- man/fbGetToken.Rd | 56 ++++++------- 12 files changed, 241 insertions(+), 248 deletions(-)
Title: Reddit Data Extraction Toolkit
Description: A collection of tools for extracting structured data from <https://www.reddit.com/>.
Author: Ivan Rivera <ivan.s.rivera@gmail.com>
Maintainer: Ivan Rivera <ivan.s.rivera@gmail.com>
Diff between RedditExtractoR versions 3.0.8 dated 2023-03-16 and 3.0.9 dated 2023-03-17
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ R/get_user_content.R | 18 ++++++++++++++---- 4 files changed, 25 insertions(+), 10 deletions(-)
More information about RedditExtractoR at CRAN
Permanent link
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <d [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.3-12 dated 2023-02-28 and 1.3-13 dated 2023-03-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/AAA.R | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS | 6 +++++- inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary 8 files changed, 17 insertions(+), 13 deletions(-)
Title: Match One Sample using Two Criteria
Description: Multivariate matching in observational studies typically has two goals: 1. to construct
treated and control groups that have similar distribution of observed covariates and 2. to produce
matched pairs or sets that are homogeneous in a few priority variables. This packages implements a
network-flow-based method built around a tripartite graph that can simultaneously achieve both goals.
The package also implements a template matching algorithm using a variant of the tripartite graph
design. A brief description of the workflow and some examples are given in the vignette. A more elaborated
tutorial can be found at <https://www.researchgate.net/publication/359513837_Tutorial_for_R_Package_match2C>.
Author: Bo Zhang [aut, cre]
Maintainer: Bo Zhang <bzhang3@fredhutch.org>
Diff between match2C versions 1.2.3 dated 2022-03-28 and 1.2.4 dated 2023-03-17
DESCRIPTION | 12 MD5 | 12 R/stitch_two_nets_template.R | 4 R/template_match.R | 2 R/treated_control_net.R | 2 inst/doc/tutorial.html | 822 ++++++++++++++++++++++++++----------------- man/template_match.Rd | 2 7 files changed, 533 insertions(+), 323 deletions(-)
Title: Models Spatially Continuous and Discrete Population Genetic
Structure
Description: A method for modeling genetic data as a combination of discrete
layers, within each of which relatedness may decay continuously with geographic
distance. This package contains code for running analyses (which are implemented
in the modeling language 'rstan') and visualizing and interpreting output. See the
paper for more details on the model and its utility.
Author: Gideon Bradburd [aut, cre]
Maintainer: Gideon Bradburd <bradburd@umich.edu>
Diff between conStruct versions 1.0.4 dated 2019-12-12 and 1.0.5 dated 2023-03-17
conStruct-1.0.4/conStruct/inst/include/meta_header.hpp |only conStruct-1.0.4/conStruct/src/init.cpp |only conStruct-1.0.4/conStruct/src/stan_files |only conStruct-1.0.4/conStruct/tools |only conStruct-1.0.5/conStruct/CHANGELOG |only conStruct-1.0.5/conStruct/DESCRIPTION | 17 conStruct-1.0.5/conStruct/MD5 | 55 conStruct-1.0.5/conStruct/NEWS.md | 6 conStruct-1.0.5/conStruct/R/format.data.R | 2 conStruct-1.0.5/conStruct/R/model.comparison.R | 13 conStruct-1.0.5/conStruct/R/run.conStruct.R | 8 conStruct-1.0.5/conStruct/R/stanmodels.R | 59 conStruct-1.0.5/conStruct/build/vignette.rds |binary conStruct-1.0.5/conStruct/configure |only conStruct-1.0.5/conStruct/configure.win |only conStruct-1.0.5/conStruct/inst/doc/format-data.html | 499 ++++-- conStruct-1.0.5/conStruct/inst/doc/model-comparison.html | 912 +++++++----- conStruct-1.0.5/conStruct/inst/doc/run-conStruct.html | 429 +++-- conStruct-1.0.5/conStruct/inst/doc/visualize-results.html | 476 +++--- conStruct-1.0.5/conStruct/inst/include/stan_meta_header.hpp |only conStruct-1.0.5/conStruct/inst/stan |only conStruct-1.0.5/conStruct/man/conStruct.data.Rd | 6 conStruct-1.0.5/conStruct/man/data.block.Rd | 6 conStruct-1.0.5/conStruct/src/Makevars | 24 conStruct-1.0.5/conStruct/src/Makevars.win | 24 conStruct-1.0.5/conStruct/src/RcppExports.cpp |only conStruct-1.0.5/conStruct/src/stanExports_multiK.cc |only conStruct-1.0.5/conStruct/src/stanExports_multiK.h |only conStruct-1.0.5/conStruct/src/stanExports_oneK.cc |only conStruct-1.0.5/conStruct/src/stanExports_oneK.h |only conStruct-1.0.5/conStruct/src/stanExports_space_multiK.cc |only conStruct-1.0.5/conStruct/src/stanExports_space_multiK.h |only conStruct-1.0.5/conStruct/src/stanExports_space_oneK.cc |only conStruct-1.0.5/conStruct/src/stanExports_space_oneK.h |only 34 files changed, 1596 insertions(+), 940 deletions(-)
Title: R Interface to Yandex Metrica API
Description: Allows work with 'Management API' for load counters, segments, filters,
user permissions and goals list from Yandex Metrica, 'Reporting API' allows you to get
information about the statistics of site visits and other data without
using the web interface, 'Logs API' allows to receive non-aggregated data and
'Compatible with Google Analytics Core Reporting API v3' allows
receive information about site traffic and other data using field names
from Google Analytics Core API. For more information see official
documents <https://yandex.ru/dev/metrika/doc/api2/concept/about-docpage>.
Author: Alexey Seleznev [aut, cre] ,
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rym versions 1.0.5 dated 2021-09-03 and 1.0.6 dated 2023-03-17
DESCRIPTION | 7 MD5 | 28 - NEWS.md | 2 R/rym_get_ga.R | 13 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/intro-to-rym.html | 407 ++++++++++++++++++++++----- inst/doc/rym-calls.html | 398 ++++++++++++++++++++------ inst/doc/rym-ga-api.html | 381 ++++++++++++++++++++----- inst/doc/rym-load-expense.html | 362 +++++++++++++++++++----- inst/doc/rym-load-offline-conversion.html | 409 +++++++++++++++++++++------ inst/doc/rym-logs-api.html | 360 +++++++++++++++++++---- inst/doc/rym-management-api.html | 451 +++++++++++++++++++++++------- inst/doc/rym-reporting-api.html | 394 ++++++++++++++++++++------ 15 files changed, 2530 insertions(+), 684 deletions(-)
Title: Parsing and Code Generation Functions for 'rxode2'
Description: Provides the parsing needed for 'rxode2' (Wang, Hallow and
James (2016) <doi:10.1002/psp4.12052>). It also provides the 'stan'
based advan linear compartment model solutions with gradients
(Carpenter et al (2015), <arXiv:1509.07164>) needed in 'nlmixr2'
(Fidler et al (2019) <doi:10.1002/psp4.12445>).
This split will reduce computational burden of recompiling 'rxode2'.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [aut],
Richard Upton [ctb],
Gabriel Staples [ctb],
Goro Fuji [ctb],
Morwenn [ctb],
Igor Kushnir [ctb],
Kevin Ushey [ctb],
David Cooley [ctb]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2parse versions 2.0.13 dated 2022-11-10 and 2.0.14 dated 2023-03-17
DESCRIPTION | 34 ++-- MD5 | 129 +++++++++------- NAMESPACE | 14 + NEWS.md | 59 +++++++ R/RcppExports.R | 81 ++++++++++ R/dfIni.R | 53 +----- R/etTran.R |only R/intern.R | 4 R/parseFuns.R | 110 +++++++++----- R/rxode2parse_md5.R | 2 R/tran.R | 82 ++++++++-- R/utils.R |only README.md | 3 build/refresh.R | 3 inst/include/rxode2_model_shared.c | 5 inst/include/rxode2_model_shared.h | 8 + inst/include/rxode2parseConvertMethod.h |only inst/include/rxode2parseHandleEvid.h | 85 ++++++++++ inst/include/rxode2parseStruct.h | 5 inst/include/rxode2parseVer.h | 4 inst/include/sbuf.c | 17 +- inst/tools/workaround.R | 18 +- man/dot-convertId.Rd |only man/dot-getLastIdLvl.Rd |only man/dot-getWh.Rd |only man/dot-rxTransInfo.Rd |only man/dot-rxode2parseFunPtrs.Rd |only man/dot-toClassicEvid.Rd |only man/etTransParse.Rd |only man/forderForceBase.Rd |only man/rxDerived.Rd |only man/rxSetIni0.Rd |only man/rxode2parse.Rd | 22 ++ src/Makevars.in | 3 src/RcppExports.cpp | 86 +++++++++++ src/codegen.c | 53 +++++- src/codegen.h | 2 src/codegen2.h | 5 src/etTran.cpp |only src/fast_factor.cpp |only src/init.c | 74 +++++++++ src/lincmt.c | 11 + src/lincmtB.cpp | 2 src/parseCmtProperties.h | 16 +- src/parseDdt.h | 55 +++++-- src/parseFuns.h | 59 +++++++ src/parseFunsLinCmt.h | 250 +++++++++++++++++++++----------- src/parseIdentifier.h | 18 +- src/parseLinCmt.c | 4 src/parseLinCmt.h | 1 src/parseLinCmtAdjustPars.h | 94 +++++++----- src/parseLinCmtCl.h | 27 ++- src/parseLinCmtTransAlpha.h | 8 + src/parseLinCmtTransCl.h | 20 +- src/parseLinCmtTransK.h | 73 +++++---- src/parseLinCmtV.h | 1 src/parseLogical.h | 16 +- src/parseStatements.h | 68 ++++++-- src/parseSyntaxErrors.h | 105 +++++++------ src/parseVars.h | 13 + src/print_node.c | 12 + src/print_node.h | 14 + src/qs.cpp | 85 ++++++++++ src/sbuf.c | 17 +- src/strncmpi.c |only src/strncmpi.h |only src/timsort.h |only src/tran.c | 49 ++++++ src/tran.h | 2 src/utilc.c | 57 +++++++ tests/testthat/etTrans-drop.qs |only tests/testthat/etTrans1.qs |only tests/testthat/test-derived.R |only tests/testthat/test-etTrans-1.qs |only tests/testthat/test-etTrans.R |only tests/testthat/test-lincmt-parse.R |only tests/testthat/test-parsing.R | 92 +++++++++++ tests/testthat/test-strcmp.R |only 78 files changed, 1680 insertions(+), 450 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Lightweight parallel code execution, local or distributed across
the network. Designed for simplicity, a 'mirai' evaluates an arbitrary
expression asynchronously, resolving automatically upon completion.
Built on 'nanonext' and 'NNG' (Nanomsg Next Gen), uses scalability protocols
not subject to R connection limits and transports faster than TCP/IP where
applicable.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai versions 0.8.0 dated 2023-03-15 and 0.8.1 dated 2023-03-17
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/mirai-package.R | 23 ++++++++++++----------- R/mirai.R | 2 +- man/dot-.Rd | 2 +- tests/tests.R | 53 +++++++++++++++++++++++++++-------------------------- 7 files changed, 54 insertions(+), 48 deletions(-)
Title: Interval Vectors
Description: Provides a library for generic interval manipulations using a
new interval vector class. Capabilities include: locating various
kinds of relationships between two interval vectors, merging overlaps
within a single interval vector, splitting an interval vector on its
overlapping endpoints, and applying set theoretical operations on
interval vectors. Many of the operations in this package were inspired
by James Allen's interval algebra, Allen (1983)
<doi:10.1145/182.358434>.
Author: Davis Vaughan [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between ivs versions 0.1.0 dated 2022-04-05 and 0.2.0 dated 2023-03-17
ivs-0.1.0/ivs/R/between.R |only ivs-0.1.0/ivs/R/compat-purrr.R |only ivs-0.1.0/ivs/man/iv_between.Rd |only ivs-0.1.0/ivs/man/iv_count_between.Rd |only ivs-0.1.0/ivs/man/iv_locate_between.Rd |only ivs-0.1.0/ivs/man/iv_pairwise_between.Rd |only ivs-0.1.0/ivs/tests/testthat/_snaps/between.md |only ivs-0.1.0/ivs/tests/testthat/test-between.R |only ivs-0.2.0/ivs/DESCRIPTION | 23 - ivs-0.2.0/ivs/LICENSE | 2 ivs-0.2.0/ivs/MD5 | 135 ++++-- ivs-0.2.0/ivs/NAMESPACE | 49 +- ivs-0.2.0/ivs/NEWS.md |only ivs-0.2.0/ivs/R/containers.R |only ivs-0.2.0/ivs/R/count.R | 56 +- ivs-0.2.0/ivs/R/diff.R |only ivs-0.2.0/ivs/R/format.R | 5 ivs-0.2.0/ivs/R/groups.R | 17 ivs-0.2.0/ivs/R/helper.R | 14 ivs-0.2.0/ivs/R/import-standalone-obj-type.R |only ivs-0.2.0/ivs/R/import-standalone-purrr.R |only ivs-0.2.0/ivs/R/import-standalone-types-check.R |only ivs-0.2.0/ivs/R/iv.R | 100 +++-- ivs-0.2.0/ivs/R/ivs-deprecated.R |only ivs-0.2.0/ivs/R/ivs-package.R | 3 ivs-0.2.0/ivs/R/relation.R | 192 ++++++--- ivs-0.2.0/ivs/R/set-pairwise.R | 93 ++-- ivs-0.2.0/ivs/R/set.R | 158 ++++--- ivs-0.2.0/ivs/R/span.R |only ivs-0.2.0/ivs/R/splits.R | 55 +- ivs-0.2.0/ivs/R/utils.R | 70 +++ ivs-0.2.0/ivs/R/vector.R |only ivs-0.2.0/ivs/R/zzz.R | 10 ivs-0.2.0/ivs/README.md | 67 +-- ivs-0.2.0/ivs/build/partial.rdb |only ivs-0.2.0/ivs/build/vignette.rds |binary ivs-0.2.0/ivs/inst/doc/examples.R |only ivs-0.2.0/ivs/inst/doc/examples.Rmd |only ivs-0.2.0/ivs/inst/doc/examples.html |only ivs-0.2.0/ivs/inst/doc/ivs.R | 34 - ivs-0.2.0/ivs/inst/doc/ivs.Rmd | 78 +-- ivs-0.2.0/ivs/inst/doc/ivs.html | 320 ++++++++-------- ivs-0.2.0/ivs/man/allen-relation-count.Rd | 12 ivs-0.2.0/ivs/man/allen-relation-detect-pairwise.Rd | 8 ivs-0.2.0/ivs/man/allen-relation-detect.Rd | 12 ivs-0.2.0/ivs/man/allen-relation-locate.Rd | 63 ++- ivs-0.2.0/ivs/man/figures/lifecycle-archived.svg |only ivs-0.2.0/ivs/man/figures/lifecycle-defunct.svg |only ivs-0.2.0/ivs/man/figures/lifecycle-deprecated.svg |only ivs-0.2.0/ivs/man/figures/lifecycle-experimental.svg |only ivs-0.2.0/ivs/man/figures/lifecycle-maturing.svg |only ivs-0.2.0/ivs/man/figures/lifecycle-questioning.svg |only ivs-0.2.0/ivs/man/figures/lifecycle-soft-deprecated.svg |only ivs-0.2.0/ivs/man/figures/lifecycle-stable.svg |only ivs-0.2.0/ivs/man/figures/lifecycle-superseded.svg |only ivs-0.2.0/ivs/man/iv-containers.Rd |only ivs-0.2.0/ivs/man/iv-genericity.Rd | 12 ivs-0.2.0/ivs/man/iv-set-pairwise-deprecated.Rd |only ivs-0.2.0/ivs/man/iv-set-pairwise.Rd | 64 +-- ivs-0.2.0/ivs/man/iv-sets-deprecated.Rd |only ivs-0.2.0/ivs/man/iv-sets.Rd | 62 +-- ivs-0.2.0/ivs/man/iv-splits.Rd | 5 ivs-0.2.0/ivs/man/iv_diff.Rd |only ivs-0.2.0/ivs/man/iv_pairwise_span.Rd |only ivs-0.2.0/ivs/man/iv_span.Rd |only ivs-0.2.0/ivs/man/ivs-package.Rd | 6 ivs-0.2.0/ivs/man/relation-count.Rd | 12 ivs-0.2.0/ivs/man/relation-detect.Rd | 12 ivs-0.2.0/ivs/man/relation-locate.Rd | 57 ++ ivs-0.2.0/ivs/man/vector-count.Rd |only ivs-0.2.0/ivs/man/vector-detect-pairwise.Rd |only ivs-0.2.0/ivs/man/vector-detect.Rd |only ivs-0.2.0/ivs/man/vector-locate.Rd |only ivs-0.2.0/ivs/tests/testthat/_snaps/containers.md |only ivs-0.2.0/ivs/tests/testthat/_snaps/diff.md |only ivs-0.2.0/ivs/tests/testthat/_snaps/iv.md | 38 + ivs-0.2.0/ivs/tests/testthat/_snaps/ivs-deprecated.md |only ivs-0.2.0/ivs/tests/testthat/_snaps/relation.md | 116 ++++- ivs-0.2.0/ivs/tests/testthat/_snaps/set-pairwise.md | 96 ++-- ivs-0.2.0/ivs/tests/testthat/_snaps/span.md |only ivs-0.2.0/ivs/tests/testthat/_snaps/splits.md | 2 ivs-0.2.0/ivs/tests/testthat/_snaps/vector.md |only ivs-0.2.0/ivs/tests/testthat/test-containers.R |only ivs-0.2.0/ivs/tests/testthat/test-diff.R |only ivs-0.2.0/ivs/tests/testthat/test-iv.R | 142 ++++++- ivs-0.2.0/ivs/tests/testthat/test-ivs-deprecated.R |only ivs-0.2.0/ivs/tests/testthat/test-relation.R | 51 ++ ivs-0.2.0/ivs/tests/testthat/test-set-pairwise.R | 164 ++------ ivs-0.2.0/ivs/tests/testthat/test-set.R | 140 +++---- ivs-0.2.0/ivs/tests/testthat/test-span.R |only ivs-0.2.0/ivs/tests/testthat/test-splits.R | 5 ivs-0.2.0/ivs/tests/testthat/test-vector.R |only ivs-0.2.0/ivs/vignettes/examples.Rmd |only ivs-0.2.0/ivs/vignettes/ivs.Rmd | 78 +-- 94 files changed, 1565 insertions(+), 1073 deletions(-)
Title: Flexible Cutoffs for Model Fit Evaluation in Covariance-Based
Structural Models
Description: A toolbox to derive flexible cutoffs for fit indices in 'Covariance-based Structural Equation Modeling' based on the paper by 'Niemand & Mai (2018)' <doi:10.1007/s11747-018-0602-9>. Flexible cutoffs are an alternative to fixed cutoffs - rules-of-thumb - regarding an appropriate cutoff for fit indices such as 'CFI' or 'SRMR'. It has been demonstrated that these flexible cutoffs perform better than fixed cutoffs in grey areas where misspecification is not easy to detect. The package provides an alternative to the tool at <https://flexiblecutoffs.org> as it allows to tailor flexible cutoffs to a given dataset and model, which is so far not available in the tool. The package simulates fit indices based on a given dataset and model and then estimates the flexible cutoffs. Some useful functions, e.g., to determine the 'GoF-' or 'BoF-nature' of a fit index, are provided. So far, additional options for a relative use (is a model better than another?) are provided in an explorat [...truncated...]
Author: Thomas Niemand [aut, cre] ,
Robert Mai [ctb]
Maintainer: Thomas Niemand <thomas.niemand@gmail.com>
Diff between FCO versions 0.7.2 dated 2022-02-11 and 0.8.0 dated 2023-03-17
DESCRIPTION | 12 MD5 | 30 - NEWS.md | 10 R/gen_fit.R | 49 + R/generator.R | 20 R/get_free.R | 38 - R/merge_factors.R | 2 README.md | 36 - build/vignette.rds |binary inst/doc/FCO.R | 8 inst/doc/FCO.Rmd | 22 inst/doc/FCO.html | 1109 ++++++++++++++++++++++++++++++++---------- man/gen_fit.Rd | 9 man/index_guess.Rd | 12 tests/testthat/test-gen_fit.R | 33 + vignettes/FCO.Rmd | 22 16 files changed, 1033 insertions(+), 379 deletions(-)
Title: Exploratory Factor Analysis Functions for Assessing
Dimensionality
Description: Functions for eleven procedures for determining the number of
factors, including functions for parallel analysis and the minimum average partial
test. There are also functions for conducting principal components analysis, principal
axis factor analysis, maximum likelihood factor analysis, image factor analysis,
and extension factor analysis, all of which can take raw data or correlation matrices
as input and with options for conducting the analyses using Pearson correlations,
Kendall correlations, Spearman correlations, gamma correlations, or polychoric
correlations. Varimax rotation, promax rotation, and Procrustes rotations can be
performed. Additional functions focus on the factorability of a correlation matrix,
the congruences between factors from different datasets, the assessment of local
independence, the assessment of factor solution complexity, and internal consistency.
Auerswald & Moshagen (2019, ISSN:1939-1463);
Fabrigar & Wegener (2012, ISBN:978-0-19-973417-7);
Fiel [...truncated...]
Author: Brian P. O'Connor [aut, cre]
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between EFA.dimensions versions 0.1.7.6 dated 2023-01-11 and 0.1.7.7 dated 2023-03-17
DESCRIPTION | 14 ++-- MD5 | 60 +++++++++++---------- NAMESPACE | 6 +- R/DIMTESTS.R | 2 R/EMPKC.R | 2 R/EXTENSION_FA.R | 2 R/FACTORABILITY.R | 2 R/IMAGE_FA.R | 2 R/INTERNAL.CONSISTENCY.R | 58 +++++++++++++------- R/LOCALDEP.R | 132 +++++++++++++++++++++++++++++++++-------------- R/MAP.R | 4 + R/MAXLIKE_FA.R | 2 R/NEVALSGT1.R | 2 R/PA_FA.R | 2 R/PCA.R | 5 + R/POLYCHORIC_R.R | 51 ++++++++++++++---- R/RAWPAR.R | 2 R/RECODE.R |only R/ROOTFIT.R | 2 R/SALIENT.R | 2 R/SCREE_PLOT.R | 2 R/SESCREE.R | 2 R/SMT.R | 2 R/boc.R | 26 +++++++++ data/data_Field.rda |binary data/data_Harman.rda |binary data/data_NEOPIR.rda |binary data/data_RSE.rda |binary data/data_TabFid.rda |binary man/CONGRUENCE.Rd | 9 +++ man/LOCALDEP.Rd | 73 ++++++++++++++++--------- man/RECODE.Rd |only 32 files changed, 333 insertions(+), 133 deletions(-)
More information about EFA.dimensions at CRAN
Permanent link
Title: Dose-Response Data Analysis
Description: Fit logistic functions to observed dose-response continuous
data and evaluate goodness-of-fit measures. See Malyutina A., Tang J.,
and Pessia A. (2023) <doi:10.18637/jss.v106.i04>.
Author: Alberto Pessia [aut, cre] ,
Alina Malyutina [ctb]
Maintainer: Alberto Pessia <dev@albertopessia.com>
Diff between drda versions 2.0.2 dated 2022-11-25 and 2.0.3 dated 2023-03-17
DESCRIPTION | 22 +++++----- MD5 | 42 +++++++++---------- NEWS.md | 17 +++++++ R/drda-package.R | 6 +- R/gompertz.R | 1 R/loggompertz.R | 1 R/logistic2.R | 12 +++++ R/logistic4.R | 1 R/logistic5.R | 1 R/logistic6.R | 1 R/loglogistic2.R | 12 +++++ R/loglogistic4.R | 1 R/loglogistic5.R | 1 R/loglogistic6.R | 1 R/plot.R | 89 ++++++++++++++++++++++++++-------------- inst/CITATION | 43 +++++++++++-------- inst/WORDLIST | 1 inst/doc/drda.R | 9 ++-- inst/doc/drda.Rtex | 113 ++++++++++++++++++++++++++++------------------------ inst/doc/drda.pdf |binary man/drda-package.Rd | 6 +- vignettes/drda.Rtex | 113 ++++++++++++++++++++++++++++------------------------ 22 files changed, 291 insertions(+), 202 deletions(-)
Title: Consistent Perturbation of Statistical Frequency- And Magnitude
Tables
Description: Data from statistical agencies and other institutions often
need to be protected before they can be published. This package
can be used to perturb statistical tables in a consistent way. The
main idea is to add - at the micro data level - a record key for each
unit. Based on these keys, for any cell in a statistical table a
cell key is computed as a function on the record keys contributing to
a specific cell. Values that are added to the cell in order to perturb
it are derived from a lookup-table that maps values of cell keys to
specific perturbation values. The theoretical basis for the methods
implemented can be found in Thompson, Broadfoot and Elazar
(2013) <https://unece.org/fileadmin/DAM/stats/documents/ece/ces/ge.46/2013/Topic_1_ABS.pdf>
which was extended and enhanced by Giessing and Tent
(2019) <https://unece.org/fileadmin/DAM/stats/documents/ece/ces/ge.46/2019/mtg1/SDC2019_S2_Germany_Giessing_Tent_AD.pdf>.
Author: Bernhard Meindl [aut, cre]
Maintainer: Bernhard Meindl <bernhard.meindl@statistik.gv.at>
Diff between cellKey versions 1.0.0 dated 2023-03-10 and 1.0.1 dated 2023-03-17
DESCRIPTION | 8 MD5 | 16 - NEWS.md | 3 build/vignette.rds |binary inst/doc/introduction.html | 314 +++++++++++++++----------------- tests/testthat/test_ck_generate_rkeys.R | 12 + tests/testthat/test_countvars.R | 150 +++++++++++++-- tests/testthat/test_numvars.R | 54 ++++- tests/testthat/test_params_nums.R | 81 ++++++-- 9 files changed, 415 insertions(+), 223 deletions(-)
Title: A Simple S3 Class for Representing Vectors of Binary Data
('BLOBS')
Description: R's raw vector is useful for storing a single binary object.
What if you want to put a vector of them in a data frame? The 'blob'
package provides the blob object, a list of raw vectors, suitable for
use as a column in data frame.
Author: Hadley Wickham [aut],
Kirill Mueller [cre],
RStudio [cph, fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between blob versions 1.2.3 dated 2022-04-10 and 1.2.4 dated 2023-03-17
DESCRIPTION | 12 +++++------ MD5 | 12 +++++------ NEWS.md | 9 +++++++- R/compat-lifecycle.R | 8 +++---- R/format.R | 4 +-- README.md | 50 ++++++++++++++++++++++++------------------------- man/vec_ptype2.blob.Rd | 12 ++--------- 7 files changed, 54 insertions(+), 53 deletions(-)
Title: Feature Selection and Ranking via Simultaneous Perturbation
Stochastic Approximation
Description: An implementation of feature selection, weighting and ranking via simultaneous perturbation
stochastic approximation (SPSA). The SPSA-FSR algorithm searches for a locally optimal set of
features that yield the best predictive performance using some error measures such as mean
squared error (for regression problems) and accuracy rate (for classification problems).
Author: David Akman [aut, cre],
Babak Abbasi [aut, ctb],
Yong Kai Wong [aut, ctb],
Guo Feng Anders Yeo [aut, ctb],
Zeren D. Yenice [ctb]
Maintainer: David Akman <david.v.akman@gmail.com>
Diff between spFSR versions 2.0.3 dated 2022-11-13 and 2.0.4 dated 2023-03-17
spFSR-2.0.3/spFSR/R/spFSR.R |only spFSR-2.0.4/spFSR/DESCRIPTION | 7 +++---- spFSR-2.0.4/spFSR/MD5 | 11 +++++------ spFSR-2.0.4/spFSR/NAMESPACE | 2 +- spFSR-2.0.4/spFSR/R/spFeatureSelection.R | 3 --- spFSR-2.0.4/spFSR/man/spFSR.default.Rd | 2 +- spFSR-2.0.4/spFSR/man/spFeatureSelection.Rd | 3 --- 7 files changed, 10 insertions(+), 18 deletions(-)
Title: Analyze Cricket Performances Based on Data from Cricsheet
Description: Analyzing performances of cricketers and cricket teams
based on 'yaml' match data from Cricsheet <https://cricsheet.org/>.
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
Diff between yorkr versions 0.0.37 dated 2023-01-24 and 0.0.39 dated 2023-03-17
DESCRIPTION | 8 MD5 | 186 +++++++++++---------- NAMESPACE | 5 R/batsmanWinProbDL.R |only R/batsmanWinProbLR.R |only R/bowlerWinProbDL.R |only R/bowlerWinProbLR.R |only R/globals.R | 2 R/matchWormChart.R | 2 R/matchWormWicket.R | 2 R/winProbDL.R | 44 ++++ R/winProbGAN.R |only R/winProbLR.R | 50 +++++ man/batsmanCumulativeAverageRuns.Rd | 96 +++++----- man/batsmanCumulativeStrikeRate.Rd | 96 +++++----- man/batsmanDismissals.Rd | 90 +++++----- man/batsmanFoursSixes.Rd | 100 +++++------ man/batsmanMovingAverage.Rd | 100 +++++------ man/batsmanRunsAgainstOpposition.Rd | 100 +++++------ man/batsmanRunsPredict.Rd | 96 +++++----- man/batsmanRunsVenue.Rd | 102 +++++------ man/batsmanRunsVsDeliveries.Rd | 96 +++++----- man/batsmanRunsVsStrikeRate.Rd | 100 +++++------ man/batsmanWinProbDL.Rd |only man/batsmanWinProbLR.Rd |only man/bowlerCumulativeAvgEconRate.Rd | 96 +++++----- man/bowlerCumulativeAvgWickets.Rd | 96 +++++----- man/bowlerDeliveryWickets.Rd | 98 +++++------ man/bowlerMeanEconomyRate.Rd | 96 +++++----- man/bowlerMeanRunsConceded.Rd | 96 +++++----- man/bowlerMovingAverage.Rd | 96 +++++----- man/bowlerWicketsAgainstOpposition.Rd | 96 +++++----- man/bowlerWicketsVenue.Rd | 96 +++++----- man/bowlerWinProbDL.Rd |only man/bowlerWinProbLR.Rd |only man/bowlerWktsPredict.Rd | 92 +++++----- man/convertAllYaml2RDataframes.Rd | 90 +++++----- man/convertAllYaml2RDataframesT20.Rd | 90 +++++----- man/convertYaml2RDataframe.Rd | 92 +++++----- man/convertYaml2RDataframeT20.Rd | 92 +++++----- man/getAllMatchesAllOpposition.Rd | 108 ++++++------ man/getAllMatchesBetweenTeams.Rd | 112 ++++++------ man/getBatsmanDetails.Rd | 90 +++++----- man/getBowlerWicketDetails.Rd | 104 +++++------ man/getDeliveryWickets.Rd | 104 +++++------ man/getMatchDetails.Rd | 108 ++++++------ man/getTeamBattingDetails.Rd | 100 +++++------ man/getTeamBowlingDetails.Rd | 100 +++++------ man/matchWormGraph.Rd | 98 +++++------ man/parseYamlOver.Rd | 100 +++++------ man/plotWinLossBetweenTeams.Rd | 100 +++++------ man/rankODIBatsmen.Rd | 86 ++++----- man/rankODIBowlers.Rd | 86 ++++----- man/rankT20Batsmen.Rd | 88 ++++----- man/rankT20Bowlers.Rd | 90 +++++----- man/saveAllMatchesAllOpposition.Rd | 86 ++++----- man/saveAllMatchesAllOppositionBBLT20.Rd | 86 ++++----- man/saveAllMatchesAllOppositionIPLT20.Rd | 86 ++++----- man/saveAllMatchesAllOppositionNTBT20.Rd | 86 ++++----- man/saveAllMatchesAllOppositionPSLT20.Rd | 86 ++++----- man/saveAllMatchesAllOppositionWBBT20.Rd | 86 ++++----- man/saveAllMatchesBetween2BBLTeams.Rd | 86 ++++----- man/saveAllMatchesBetween2IPLTeams.Rd | 86 ++++----- man/saveAllMatchesBetween2NTBTeams.Rd | 86 ++++----- man/saveAllMatchesBetween2PSLTeams.Rd | 86 ++++----- man/saveAllMatchesBetween2WBBTeams.Rd | 86 ++++----- man/saveAllMatchesBetweenTeams.Rd | 86 ++++----- man/specialProc.Rd | 104 +++++------ man/teamBatsmenPartnershiOppnAllMatches.Rd | 106 +++++------ man/teamBatsmenPartnershipAllOppnAllMatches.Rd | 108 ++++++------ man/teamBatsmenPartnershipAllOppnAllMatchesPlot.Rd | 106 +++++------ man/teamBatsmenPartnershipMatch.Rd | 104 +++++------ man/teamBatsmenPartnershipOppnAllMatchesChart.Rd | 106 +++++------ man/teamBatsmenVsBowlersAllOppnAllMatchesPlot.Rd | 102 +++++------ man/teamBatsmenVsBowlersAllOppnAllMatchesRept.Rd | 114 ++++++------ man/teamBatsmenVsBowlersMatch.Rd | 100 +++++------ man/teamBatsmenVsBowlersOppnAllMatches.Rd | 116 ++++++------- man/teamBattingPerfDetails.Rd | 90 +++++----- man/teamBattingScorecardAllOppnAllMatches.Rd | 108 ++++++------ man/teamBattingScorecardMatch.Rd | 88 ++++----- man/teamBattingScorecardOppnAllMatches.Rd | 108 ++++++------ man/teamBowlersVsBatsmenAllOppnAllMatchesMain.Rd | 114 ++++++------ man/teamBowlersVsBatsmenAllOppnAllMatchesPlot.Rd | 112 ++++++------ man/teamBowlersVsBatsmenAllOppnAllMatchesRept.Rd | 126 +++++++------- man/teamBowlersVsBatsmenMatch.Rd | 108 ++++++------ man/teamBowlersVsBatsmenOppnAllMatches.Rd | 124 +++++++------- man/teamBowlersWicketKindOppnAllMatches.Rd | 114 ++++++------ man/teamBowlersWicketRunsOppnAllMatches.Rd | 108 ++++++------ man/teamBowlersWicketsOppnAllMatches.Rd | 122 ++++++------- man/teamBowlingPerfDetails.Rd | 96 +++++----- man/teamBowlingPerfOppnAllMatches.Rd | 104 +++++------ man/teamBowlingScorecardAllOppnAllMatches.Rd | 108 ++++++------ man/teamBowlingScorecardMatch.Rd | 90 +++++----- man/teamBowlingWicketKindAllOppnAllMatches.Rd | 114 ++++++------ man/teamBowlingWicketKindMatch.Rd | 100 +++++------ man/teamBowlingWicketMatch.Rd | 100 +++++------ man/teamBowlingWicketRunsAllOppnAllMatches.Rd | 108 ++++++------ man/teamBowlingWicketRunsMatch.Rd | 102 +++++------ man/winProbabilityGAN.Rd |only 99 files changed, 4213 insertions(+), 4104 deletions(-)
Title: Non-Negative Tensor Decomposition
Description: Some functions for performing non-negative matrix factorization, non-negative CANDECOMP/PARAFAC (CP) decomposition, non-negative Tucker decomposition, and generating toy model data. See Andrzej Cichock et al (2009) and the reference section of GitHub README.md <https://github.com/rikenbit/nnTensor>, for details of the methods.
Author: Koki Tsuyuzaki [aut, cre],
Itoshi Nikaido [aut]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between nnTensor versions 1.1.12 dated 2023-02-15 and 1.1.13 dated 2023-03-17
DESCRIPTION | 6 ++--- MD5 | 30 +++++++++++++-------------- build/partial.rdb |binary inst/NEWS | 5 ++++ inst/doc/nnTensor-1.R | 8 +++---- inst/doc/nnTensor-1.Rmd | 10 ++++----- inst/doc/nnTensor-1.html | 18 ++++++++-------- inst/doc/nnTensor-2.R | 4 +-- inst/doc/nnTensor-2.Rmd | 4 +-- inst/doc/nnTensor-2.html | 12 +++++----- inst/doc/nnTensor-3.R | 36 ++++++++++++++++---------------- inst/doc/nnTensor-3.Rmd | 36 ++++++++++++++++---------------- inst/doc/nnTensor-3.html | 52 +++++++++++++++++++++++------------------------ vignettes/nnTensor-1.Rmd | 10 ++++----- vignettes/nnTensor-2.Rmd | 4 +-- vignettes/nnTensor-3.Rmd | 36 ++++++++++++++++---------------- 16 files changed, 138 insertions(+), 133 deletions(-)
Title: Discrete Matrix/Tensor Decomposition
Description: Semi-Binary and Semi-Ternary Matrix Decomposition are performed based on Non-negative Matrix Factorization (NMF) and Singular Value Decomposition (SVD). For the details of the methods, see the reference section of GitHub README.md <https://github.com/rikenbit/dcTensor>.
Author: Koki Tsuyuzaki [aut, cre]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between dcTensor versions 1.0.0 dated 2023-03-06 and 1.0.1 dated 2023-03-17
dcTensor-1.0.0/dcTensor/inst/doc/dNMF.R |only dcTensor-1.0.0/dcTensor/inst/doc/dNMF.Rmd |only dcTensor-1.0.0/dcTensor/inst/doc/dNMF.html |only dcTensor-1.0.0/dcTensor/inst/doc/dNTD.R |only dcTensor-1.0.0/dcTensor/inst/doc/dNTD.Rmd |only dcTensor-1.0.0/dcTensor/inst/doc/dNTD.html |only dcTensor-1.0.0/dcTensor/inst/doc/dNTF.R |only dcTensor-1.0.0/dcTensor/inst/doc/dNTF.Rmd |only dcTensor-1.0.0/dcTensor/inst/doc/dNTF.html |only dcTensor-1.0.0/dcTensor/inst/doc/dPLS.R |only dcTensor-1.0.0/dcTensor/inst/doc/dPLS.Rmd |only dcTensor-1.0.0/dcTensor/inst/doc/dPLS.html |only dcTensor-1.0.0/dcTensor/inst/doc/dSVD.R |only dcTensor-1.0.0/dcTensor/inst/doc/dSVD.Rmd |only dcTensor-1.0.0/dcTensor/inst/doc/dSVD.html |only dcTensor-1.0.0/dcTensor/inst/doc/djNMF.R |only dcTensor-1.0.0/dcTensor/inst/doc/djNMF.Rmd |only dcTensor-1.0.0/dcTensor/inst/doc/djNMF.html |only dcTensor-1.0.0/dcTensor/inst/doc/dsiNMF.R |only dcTensor-1.0.0/dcTensor/inst/doc/dsiNMF.Rmd |only dcTensor-1.0.0/dcTensor/inst/doc/dsiNMF.html |only dcTensor-1.0.0/dcTensor/vignettes/dNMF.Rmd |only dcTensor-1.0.0/dcTensor/vignettes/dNTD.Rmd |only dcTensor-1.0.0/dcTensor/vignettes/dNTF.Rmd |only dcTensor-1.0.0/dcTensor/vignettes/dPLS.Rmd |only dcTensor-1.0.0/dcTensor/vignettes/dSVD.Rmd |only dcTensor-1.0.0/dcTensor/vignettes/djNMF.Rmd |only dcTensor-1.0.0/dcTensor/vignettes/dsiNMF.Rmd |only dcTensor-1.0.1/dcTensor/DESCRIPTION | 6 +- dcTensor-1.0.1/dcTensor/MD5 | 64 +++++++++++------------ dcTensor-1.0.1/dcTensor/build/partial.rdb |binary dcTensor-1.0.1/dcTensor/build/vignette.rds |binary dcTensor-1.0.1/dcTensor/inst/NEWS | 4 + dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-1.R |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-1.Rmd |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-1.html |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-2.R |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-2.Rmd |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-2.html |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-3.R |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-3.Rmd |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-3.html |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-4.R |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-4.Rmd |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-4.html |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-5.R |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-5.Rmd |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-5.html |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-6.R |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-6.Rmd |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-6.html |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-7.R |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-7.Rmd |only dcTensor-1.0.1/dcTensor/inst/doc/dcTensor-7.html |only dcTensor-1.0.1/dcTensor/vignettes/dcTensor-1.Rmd |only dcTensor-1.0.1/dcTensor/vignettes/dcTensor-2.Rmd |only dcTensor-1.0.1/dcTensor/vignettes/dcTensor-3.Rmd |only dcTensor-1.0.1/dcTensor/vignettes/dcTensor-4.Rmd |only dcTensor-1.0.1/dcTensor/vignettes/dcTensor-5.Rmd |only dcTensor-1.0.1/dcTensor/vignettes/dcTensor-6.Rmd |only dcTensor-1.0.1/dcTensor/vignettes/dcTensor-7.Rmd |only 61 files changed, 39 insertions(+), 35 deletions(-)
Title: Instrumental-Variables Regression by '2SLS', '2SM', or '2SMM',
with Diagnostics
Description: Instrumental variable estimation for linear models by two-stage least-squares (2SLS) regression or by robust-regression via M-estimation (2SM) or MM-estimation (2SMM). The main ivreg() model-fitting function is designed to provide a workflow as similar as possible to standard lm() regression. A wide range of methods is provided for fitted ivreg model objects, including extensive functionality for computing and graphing regression diagnostics in addition to other standard model tools.
Author: John Fox [aut] ,
Christian Kleiber [aut] ,
Achim Zeileis [aut, cre] ,
Nikolas Kuschnig [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between ivreg versions 0.6-1 dated 2021-10-15 and 0.6-2 dated 2023-03-17
DESCRIPTION | 22 MD5 | 36 NEWS.md | 15 R/Kmenta.R | 2 R/ivreg.R | 2 R/ivregDiagnostics.R | 12 R/ivregMethods.R | 21 build/vignette.rds |binary inst/doc/Diagnostics-for-2SLS-Regression.Rmd | 31 inst/doc/Diagnostics-for-2SLS-Regression.html | 1688 +++++++++++++++++--------- inst/doc/ivreg.R | 2 inst/doc/ivreg.Rmd | 15 inst/doc/ivreg.html | 946 ++++++++++---- man/Kmenta.Rd | 2 man/ivreg.Rd | 2 man/ivregDiagnostics.Rd | 6 man/ivregMethods.Rd | 4 vignettes/Diagnostics-for-2SLS-Regression.Rmd | 31 vignettes/ivreg.Rmd | 15 19 files changed, 1915 insertions(+), 937 deletions(-)
Title: A Lightweight and Flexible Web Framework
Description: A very flexible framework for building server side logic in
R. The framework is unopinionated when it comes to how HTTP requests
and WebSocket messages are handled and supports all levels of app
complexity; from serving static content to full-blown dynamic
web-apps. Fiery does not hold your hand as much as e.g. the shiny
package does, but instead sets you free to create your web app the way
you want.
Author: Thomas Lin Pedersen [cre, aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between fiery versions 1.1.4 dated 2022-08-16 and 1.2.0 dated 2023-03-17
DESCRIPTION | 45 ++-- LICENSE | 4 MD5 | 47 ++-- NAMESPACE | 15 - NEWS.md | 5 R/Fire.R | 274 ++++++++++++++---------- R/FutureStack.R | 23 +- R/HandlerStack.R | 15 - R/additional_type_checks.R |only R/fake_request.R | 8 R/fiery-package.R | 7 R/import-standalone-obj-type.R |only R/import-standalone-types-check.R |only R/zzz.R |only README.md | 26 +- build/vignette.rds |binary inst/doc/delayed.html | 111 ++++------ inst/doc/events.html | 111 ++++------ inst/doc/plugins.html | 111 ++++------ man/Fire.Rd | 408 +++++++++++++++++++++++++++++++------ tests/testthat.R | 8 tests/testthat/_snaps |only tests/testthat/test-Fire.R | 20 - tests/testthat/test-FutureStack.R | 2 tests/testthat/test-HandlerStack.R | 6 tests/testthat/test-fake_request.R | 6 tests/testthat/test-loggers.R | 2 27 files changed, 796 insertions(+), 458 deletions(-)
Title: Drugs Databases Parser
Description: This tool is for parsing public drug databases such as 'DrugBank' XML database <https://go.drugbank.com/>.
The parsed data are then returned in a proper 'R' object called 'dvobject'.
Author: Mohammed Ali [aut, cre],
Ali Ezzat [aut],
Hao Zhu [rev],
Emma Mendelsohn [rev]
Maintainer: Mohammed Ali <moh_fcis@yahoo.com>
Diff between dbparser versions 1.2.0 dated 2020-08-26 and 2.0.0 dated 2023-03-17
dbparser-1.2.0/dbparser/R/drug_all_nodes_parser.R |only dbparser-1.2.0/dbparser/R/drug_tables_saver.R |only dbparser-1.2.0/dbparser/R/drugbank_metadata.R |only dbparser-1.2.0/dbparser/inst/doc/Database_Saving.R |only dbparser-1.2.0/dbparser/inst/doc/Database_Saving.Rmd |only dbparser-1.2.0/dbparser/inst/doc/Database_Saving.html |only dbparser-1.2.0/dbparser/man/cett.Rd |only dbparser-1.2.0/dbparser/man/drug_element.Rd |only dbparser-1.2.0/dbparser/man/drug_element_options.Rd |only dbparser-1.2.0/dbparser/man/drugs.Rd |only dbparser-1.2.0/dbparser/man/get_drugbank_exported_date.Rd |only dbparser-1.2.0/dbparser/man/get_drugbank_metadata.Rd |only dbparser-1.2.0/dbparser/man/get_drugbank_version.Rd |only dbparser-1.2.0/dbparser/man/references.Rd |only dbparser-1.2.0/dbparser/man/run_all_parsers.Rd |only dbparser-1.2.0/dbparser/tests/testthat/test-all-nodes-parser.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-actions-parsers-biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-actions-parsers-small-molecule.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-general-information-parsers-biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-general-information-parsers-small-molecule.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-polypeptide-general-infromation-parsers-biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-polypeptide-general-infromation-parsers-small-molecule.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-polypeptide-others-parsers-biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-polypeptide-others-parsers-small-molecule.R |only dbparser-1.2.0/dbparser/tests/testthat/test-references-parsers-biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test_drug_main_node_parser_biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test_drug_main_node_parser_small_molecule.R |only dbparser-1.2.0/dbparser/tests/testthat/test_drug_pathway_node_parser_biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test_drug_pathway_node_parser_small_molecule.R |only dbparser-1.2.0/dbparser/tests/testthat/test_drug_reaction_node_parser_biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test_drug_reaction_node_parser_small_molecule.R |only dbparser-1.2.0/dbparser/tests/testthat/test_drugbank_metadata.R |only dbparser-1.2.0/dbparser/vignettes/Database_Saving.Rmd |only dbparser-1.2.0/dbparser/vignettes/new_database.png |only dbparser-1.2.0/dbparser/vignettes/new_database_2.png |only dbparser-1.2.0/dbparser/vignettes/sql_connection.png |only dbparser-1.2.0/dbparser/vignettes/sql_tables.png |only dbparser-2.0.0/dbparser/DESCRIPTION | 21 dbparser-2.0.0/dbparser/MD5 | 205 ++-- dbparser-2.0.0/dbparser/NAMESPACE | 107 -- dbparser-2.0.0/dbparser/NEWS.md | 43 dbparser-2.0.0/dbparser/R/abstract_parser.R | 59 - dbparser-2.0.0/dbparser/R/cett_actions_parsers.R | 54 - dbparser-2.0.0/dbparser/R/cett_general_information_parsers.R | 71 - dbparser-2.0.0/dbparser/R/cett_polypeptide_general_infromation_parsers.R | 75 - dbparser-2.0.0/dbparser/R/cett_polypeptide_others_parsers.R | 251 ----- dbparser-2.0.0/dbparser/R/dbparser.R | 19 dbparser-2.0.0/dbparser/R/drug_atc_codes_node_parser.R | 22 dbparser-2.0.0/dbparser/R/drug_classfication_node_parser.R | 56 - dbparser-2.0.0/dbparser/R/drug_common_utilities.R | 88 - dbparser-2.0.0/dbparser/R/drug_main_node_parser.R | 69 - dbparser-2.0.0/dbparser/R/drug_manufacturer_node_parser.R | 20 dbparser-2.0.0/dbparser/R/drug_parsers.R | 446 +--------- dbparser-2.0.0/dbparser/R/drug_pathway_node_parsers.R | 64 - dbparser-2.0.0/dbparser/R/drug_pharmacology_parser.R | 74 - dbparser-2.0.0/dbparser/R/drug_price_node_parser.R | 20 dbparser-2.0.0/dbparser/R/drug_reaction_node_parser.R | 50 - dbparser-2.0.0/dbparser/R/drug_sequence_node_parser.R | 21 dbparser-2.0.0/dbparser/R/drug_synonym_node_parser.R | 38 dbparser-2.0.0/dbparser/R/drugbank_parser.R |only dbparser-2.0.0/dbparser/R/dvobject_metadata.R |only dbparser-2.0.0/dbparser/R/imports.R | 7 dbparser-2.0.0/dbparser/R/references_parsers.R | 345 +------ dbparser-2.0.0/dbparser/README.md | 85 + dbparser-2.0.0/dbparser/build/vignette.rds |binary dbparser-2.0.0/dbparser/inst/CITATION | 24 dbparser-2.0.0/dbparser/inst/doc/dbparser.R | 8 dbparser-2.0.0/dbparser/inst/doc/dbparser.Rmd | 17 dbparser-2.0.0/dbparser/inst/doc/dbparser.html | 306 ++++-- dbparser-2.0.0/dbparser/man/add_drugbank_info.Rd |only dbparser-2.0.0/dbparser/man/articles.Rd | 108 -- dbparser-2.0.0/dbparser/man/attachments.Rd | 108 -- dbparser-2.0.0/dbparser/man/books.Rd | 108 -- dbparser-2.0.0/dbparser/man/cett_actions_doc.Rd | 102 -- dbparser-2.0.0/dbparser/man/cett_doc.Rd | 102 -- dbparser-2.0.0/dbparser/man/cett_ex_identity_doc.Rd | 102 -- dbparser-2.0.0/dbparser/man/cett_go_doc.Rd | 102 -- dbparser-2.0.0/dbparser/man/cett_nodes_options.Rd |only dbparser-2.0.0/dbparser/man/cett_poly_doc.Rd | 102 -- dbparser-2.0.0/dbparser/man/cett_poly_pfms_doc.Rd | 102 -- dbparser-2.0.0/dbparser/man/cett_poly_syn_doc.Rd | 102 -- dbparser-2.0.0/dbparser/man/dbparser.Rd | 21 dbparser-2.0.0/dbparser/man/drug_affected_organisms.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_ahfs_codes.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_atc_codes.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_calc_prop.Rd | 103 -- dbparser-2.0.0/dbparser/man/drug_categories.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_classification.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_dosages.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_ex_identity.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_exp_prop.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_external_links.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_food_interactions.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_general_information.Rd | 103 -- dbparser-2.0.0/dbparser/man/drug_groups.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_interactions.Rd | 103 -- dbparser-2.0.0/dbparser/man/drug_intern_brand.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_manufacturers.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_mixtures.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_node_options.Rd |only dbparser-2.0.0/dbparser/man/drug_packagers.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_patents.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_pathway.Rd | 74 - dbparser-2.0.0/dbparser/man/drug_pathway_drugs.Rd | 76 - dbparser-2.0.0/dbparser/man/drug_pathway_enzyme.Rd | 74 - dbparser-2.0.0/dbparser/man/drug_pdb_entries.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_pharmacology.Rd | 103 -- dbparser-2.0.0/dbparser/man/drug_prices.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_products.Rd | 107 -- dbparser-2.0.0/dbparser/man/drug_reactions.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_reactions_enzymes.Rd | 103 -- dbparser-2.0.0/dbparser/man/drug_salts.Rd | 105 -- dbparser-2.0.0/dbparser/man/drug_sequences.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_snp_adverse_reactions.Rd | 101 -- dbparser-2.0.0/dbparser/man/drug_snp_effects.Rd | 104 -- dbparser-2.0.0/dbparser/man/drug_syn.Rd | 103 -- dbparser-2.0.0/dbparser/man/figures/logo.png |only dbparser-2.0.0/dbparser/man/init_dvobject.Rd |only dbparser-2.0.0/dbparser/man/links.Rd | 108 -- dbparser-2.0.0/dbparser/man/parseDrugBank.Rd |only dbparser-2.0.0/dbparser/man/parse_cett_node.Rd |only dbparser-2.0.0/dbparser/man/parse_drug_nodes.Rd |only dbparser-2.0.0/dbparser/man/parse_references_node.Rd |only dbparser-2.0.0/dbparser/man/read_drugbank_xml_db.Rd | 15 dbparser-2.0.0/dbparser/man/references_node_options.Rd |only dbparser-2.0.0/dbparser/man/show_dvobject_metadata.Rd |only dbparser-2.0.0/dbparser/tests/testthat/_snaps |only dbparser-2.0.0/dbparser/tests/testthat/test-drugbank-parser.R |only dbparser-2.0.0/dbparser/tests/testthat/test_dvobject_metadata.R |only dbparser-2.0.0/dbparser/vignettes/dbparser.Rmd | 17 130 files changed, 830 insertions(+), 6313 deletions(-)
Title: Client for the Comprehensive Knowledge Archive Network ('CKAN')
API
Description: Client for 'CKAN' API (<https://ckan.org/>). Includes interface
to 'CKAN' 'APIs' for search, list, show for packages, organizations, and
resources. In addition, provides an interface to the 'datastore' API.
Author: Scott Chamberlain [aut] ,
Imanuel Costigan [aut],
Wush Wu [aut] ,
Florian Mayer [aut] ,
Sharla Gelfand [aut],
Francisco Alves [aut, cre]
Maintainer: Francisco Alves <fjunior.alves.oliveira@gmail.com>
Diff between ckanr versions 0.6.0 dated 2021-02-03 and 0.7.0 dated 2023-03-17
DESCRIPTION | 25 +++++---- MD5 | 74 ++++++++++++++-------------- NEWS.md | 14 ++++- R/ckanr-package.R | 2 R/ckanr_settings.R | 2 R/dplyr.R | 2 R/ds_search.R | 2 R/ds_search_sql.R | 2 R/group_update.R | 2 R/package_revision_list.R | 16 +++++- R/package_search.R | 4 - R/package_update.R | 2 R/resource_update.R | 39 +++++++++----- R/revision_list.R | 15 ++++- R/servers.R | 5 + R/tag_search.R | 2 man/ckanr-package.Rd | 2 man/ckanr_setup.Rd | 2 man/ds_search.Rd | 4 - man/ds_search_sql.Rd | 4 - man/package_search.Rd | 2 man/resource_update.Rd | 20 +++++-- man/tag_search.Rd | 4 - tests/test-all.R | 6 -- tests/testthat/helper-ckanr.R | 26 ++++++--- tests/testthat/test-changes.R | 4 - tests/testthat/test-ckan_fetch.R | 11 ++-- tests/testthat/test-group_show.R | 6 -- tests/testthat/test-license_list.R | 5 - tests/testthat/test-organization_list.R | 2 tests/testthat/test-package_activity_list.R | 3 - tests/testthat/test-package_revision_list.R | 40 +++++++++------ tests/testthat/test-ping.R | 10 ++- tests/testthat/test-resource_show.R | 4 - tests/testthat/test-resource_update.R | 33 ++++++++++++ tests/testthat/test-revision_list.R | 34 ++++++++---- tests/testthat/test-tag_search.R | 6 +- tests/testthat/test-tag_show.R | 3 - 38 files changed, 279 insertions(+), 160 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-28 1.1.2
2021-08-23 1.1.1
2021-08-16 1.1.0
2021-07-21 1.0.1
2021-07-13 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-02 0.1.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-03 0.1.18
2021-06-26 0.1.17
2021-02-05 0.1.16
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-02 0.2.2
2022-03-21 0.2.1
2022-03-08 0.2.0
2019-07-02 0.1.0