Thu, 20 Apr 2023

Package lcopula updated to version 1.0.6 with previous version 1.0.5 dated 2022-04-25

Title: Liouville Copulas
Description: Collections of functions allowing random number generations and estimation of 'Liouville' copulas, as described in Belzile and Neslehova (2017) <doi:10.1016/j.jmva.2017.05.008>.
Author: Leo Belzile [aut, cre] , Christian Genest [aut, ctb], Alexander J. McNeil [ctb], Johanna G. Neslehova [ctb]
Maintainer: Leo Belzile <belzilel@gmail.com>

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Package glmtoolbox updated to version 0.1.7 with previous version 0.1.6 dated 2023-01-05

Title: Set of Tools to Data Analysis using Generalized Linear Models
Description: Set of tools to the statistical analysis of data using: (1) normal linear models; (2) generalized linear models; (3) negative binomial regression models as alternative to the Poisson regression models under the presence of overdispersion; (4) beta-binomial and random-clumped binomial regression models as alternative to the binomial regression models under the presence of overdispersion; (5) Zero-inflated and zero-altered regression models to deal with zero-excess in count data; (6) generalized estimating equations for cluster correlated data.
Author: Luis Hernando Vanegas [aut, cre], Luz Marina Rondon [aut], Gilberto A. Paula [aut]
Maintainer: Luis Hernando Vanegas <lhvanegasp@unal.edu.co>

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Package DTComPair updated to version 1.2.0 with previous version 1.1.0 dated 2023-02-23

Title: Comparison of Binary Diagnostic Tests in a Paired Study Design
Description: Comparison of the accuracy of two binary diagnostic tests in a "paired" study design, i.e. when each test is applied to each subject in the study.
Author: Christian Stock [aut, cre] , Hielscher Thomas [aut], Andrea Discacciati [aut]
Maintainer: Christian Stock <christian.stock@boehringer-ingelheim.com>

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Package BMAmevt updated to version 1.0.5 with previous version 1.0.4 dated 2019-12-18

Title: Multivariate Extremes: Bayesian Estimation of the Spectral Measure
Description: Toolkit for Bayesian estimation of the dependence structure in multivariate extreme value parametric models, following Sabourin and Naveau (2014) <doi:10.1016/j.csda.2013.04.021> and Sabourin, Naveau and Fougeres (2013) <doi:10.1007/s10687-012-0163-0>.
Author: Leo Belzile [cre] , Anne Sabourin [aut]
Maintainer: Leo Belzile <belzilel@gmail.com>

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Package terra updated to version 1.7-28 with previous version 1.7-23 dated 2023-04-08

Title: Spatial Data Analysis
Description: Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. 'terra' replaces the 'raster' package ('terra' can do more, and it is faster and easier to use).
Author: Robert J. Hijmans [cre, aut] , Roger Bivand [ctb] , Edzer Pebesma [ctb] , Michael D. Sumner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>

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Package stacks updated to version 1.0.2 with previous version 1.0.1 dated 2022-12-14

Title: Tidy Model Stacking
Description: Model stacking is an ensemble technique that involves training a model to combine the outputs of many diverse statistical models, and has been shown to improve predictive performance in a variety of settings. 'stacks' implements a grammar for 'tidymodels'-aligned model stacking.
Author: Simon Couch [aut, cre], Max Kuhn [aut], Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>

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Package rankinma updated to version 0.1.6 with previous version 0.1.5 dated 2023-04-04

Title: Treatment Ranking in Network Meta-Analysis
Description: A supportive collection of functions for gathering and plotting treatment ranking metrics after network meta-analysis.
Author: Cheihfeng Chen [aut] , Enoch Kang [aut, cre, trl] , Wen-Hsuan Hou [aut] , Jin-Hua Chen [aut] , Yu-Chieh Chuang [aut] , Edwin Chan [aut]
Maintainer: Enoch Kang <y.enoch.kang@gmail.com>

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Package SWMPrExtension updated to version 2.2.4.2 with previous version 2.2.3 dated 2022-05-31

Title: Functions for Analyzing and Plotting Estuary Monitoring Data
Description: Tools for performing routine analysis and plotting tasks with environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System <https://cdmo.baruch.sc.edu/>. This package builds on the functionality of the 'SWMPr' package <https://cran.r-project.org/package=SWMPr>, which is used to retrieve and organize the data. The combined set of tools address common challenges associated with continuous time series data for environmental decision making, and are intended for use in annual reporting activities. References: Beck, Marcus W. (2016) <ISSN 2073-4859><https://journal.r-project.org/archive/2016-1/beck.pdf> Rudis, Bob (2014) <https://rud.is/b/2014/11/16/moving-the-earth-well-alaska-hawaii-with-r/>. United States Environmental Protection Agency (2015) <https://cfpub.epa.gov/si/si_public_record_Report.cfm?Lab=OWOW&dirEntryId=327030>. United States Environmental Protection Agency (2012) <https://citeseerx.is [...truncated...]
Author: Julie Padilla [aut, ctb], Marcus Beck [ctb], Kimberly Cressman [ctb], Dave Eslinger [aut, ctb], Kirk Waters [ctb], Bob Rudis [ctb], Davis Vaughan [ctb], Matt Dornback [aut, cre]
Maintainer: Matt Dornback <matt.dornback@noaa.gov>

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Package SPAS updated to version 2023.3.31 with previous version 2020.1.1 dated 2019-12-02

Title: Stratified-Petersen Analysis System
Description: The Stratified-Petersen Analysis System (SPAS) is designed to estimate abundance in two-sample capture-recapture experiments where the capture and recaptures are stratified. This is a generalization of the simple Lincoln-Petersen estimator. Strata may be defined in time or in space or both, and the s strata in which marking takes place may differ from the t strata in which recoveries take place. When s=t, SPAS reduces to the method described by Darroch (1961) <https://www.jstor.org/stable/2332748>. When s<t, SPAS implements the methods described in Plante, Rivest, and Tremblay (1988) <https://www.jstor.org/stable/2533994>. Schwarz and Taylor (1998) <https://cdnsciencepub.com/doi/10.1139/f97-238> describe the use of SPAS in estimating return of salmon stratified by time and geography. A related package, BTSPAS, deals with temporal stratification where a spline is used to model the distribution of the population over time as it passes the second capture location. Thi [...truncated...]
Author: Carl James Schwarz
Maintainer: Carl James Schwarz <cschwarz.stat.sfu.ca@gmail.com>

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Package scpi updated to version 2.2.2 with previous version 2.2.1 dated 2023-03-15

Title: Prediction Intervals for Synthetic Control Methods with Multiple Treated Units and Staggered Adoption
Description: Implementation of prediction and inference procedures for Synthetic Control methods using least square, lasso, ridge, or simplex-type constraints. Uncertainty is quantified with prediction intervals as developed in Cattaneo, Feng, and Titiunik (2021) <https://mdcattaneo.github.io/papers/Cattaneo-Feng-Titiunik_2021_JASA.pdf>.
Author: Matias Cattaneo [aut], Yingjie Feng [aut], Filippo Palomba [aut, cre], Rocio Titiunik [aut]
Maintainer: Filippo Palomba <fpalomba@princeton.edu>

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Package qlcal updated to version 0.0.5 with previous version 0.0.4 dated 2023-01-11

Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now maintained separately just for the calendaring subset). See the included file 'AUTHORS' for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package cellWise updated to version 2.5.2 with previous version 2.5.0 dated 2022-12-11

Title: Analyzing Data with Cellwise Outliers
Description: Tools for detecting cellwise outliers and robust methods to analyze data which may contain them. Contains the implementation of the algorithms described in Rousseeuw and Van den Bossche (2018) <doi:10.1080/00401706.2017.1340909> (open access) Hubert et al. (2019) <doi:10.1080/00401706.2018.1562989> (open access), Raymaekers and Rousseeuw (2021) <doi:10.1080/00401706.2019.1677270> (open access), Raymaekers and Rousseeuw (2021) <doi:10.1007/s10994-021-05960-5> (open access), Raymaekers and Rousseeuw (2021) <doi:10.52933/jdssv.v1i3.18> (open access), Raymaekers and Rousseeuw (2022) <arXiv:2207.13493> (open access) Rousseeuw (2022) <arXiv:2209.12697> (open access). Examples can be found in the vignettes: "DDC_examples", "MacroPCA_examples", "wrap_examples", "transfo_examples", "DI_examples", "cellMCD_examples" , "Correspondence_analysis_examples", and "cellwise_weights_examples".
Author: Jakob Raymaekers [aut, cre], Peter Rousseeuw [aut], Wannes Van den Bossche [ctb], Mia Hubert [ctb]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>

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Package resemble updated to version 2.2.2 with previous version 2.2.1 dated 2022-08-31

Title: Memory-Based Learning in Spectral Chemometrics
Description: Functions for dissimilarity analysis and memory-based learning (MBL, a.k.a local modeling) in complex spectral data sets. Most of these functions are based on the methods presented in Ramirez-Lopez et al. (2013) <doi:10.1016/j.geoderma.2012.12.014>.
Author: Leonardo Ramirez-Lopez [aut, cre], Antoine Stevens [aut, ctb], Claudio Orellano [ctb], Raphael Viscarra Rossel [ctb], Zefang Shen [ctb], Craig Lobsey [ctb], Alex Wadoux [ctb]
Maintainer: Leonardo Ramirez-Lopez <ramirez.lopez.leo@gmail.com>

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More information about resemble at CRAN
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Package grandR updated to version 0.2.2 with previous version 0.2.1 dated 2023-02-27

Title: Comprehensive Analysis of Nucleotide Conversion Sequencing Data
Description: Nucleotide conversion sequencing experiments have been developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such experiments require specialized tools for primary processing such as GRAND-SLAM, (see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for downstream analyses. 'grandR' provides a comprehensive toolbox for quality control, kinetic modeling, differential gene expression analysis and visualization of such data.
Author: Florian Erhard [aut, cre] , Teresa Rummel [ctb], Lygeri Sakellaridi [ctb]
Maintainer: Florian Erhard <Florian.Erhard@uni-wuerzburg.de>

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Package FielDHub updated to version 1.3.1 with previous version 1.2.1 dated 2022-09-20

Title: A Shiny App for Design of Experiments in Life Sciences
Description: A shiny design of experiments (DOE) app that aids in the creation of traditional, un-replicated, augmented and partially-replicated designs applied to agriculture, plant breeding, forestry, animal and biological sciences.
Author: Didier Murillo [cre, aut], Salvador Gezan [aut], Ana Heilman [ctb], Thomas Walk [ctb], Johan Aparicio [ctb], Matthew Seefeldt [ctb], Jean-Marc Montpetit [ctb], Richard Horsley [ctb], North Dakota State University [cph]
Maintainer: Didier Murillo <didier.murilloflorez@ndsu.edu>

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Package ROI updated to version 1.0-1 with previous version 1.0-0 dated 2020-08-31

Title: R Optimization Infrastructure
Description: The R Optimization Infrastructure ('ROI') <doi:10.18637/jss.v094.i15> is a sophisticated framework for handling optimization problems in R. Additional information can be found on the 'ROI' homepage <https://roi.r-forge.r-project.org/>.
Author: Kurt Hornik [aut] , David Meyer [aut], Florian Schwendinger [aut] , Stefan Theussl [aut, cre] , Diethelm Wuertz [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>

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Package WebPower updated to version 0.9.0 with previous version 0.8.7 dated 2023-01-12

Title: Basic and Advanced Statistical Power Analysis
Description: This is a collection of tools for conducting both basic and advanced statistical power analysis including correlation, proportion, t-test, one-way ANOVA, two-way ANOVA, linear regression, logistic regression, Poisson regression, mediation analysis, longitudinal data analysis, structural equation modeling and multilevel modeling. It also serves as the engine for conducting power analysis online at <https://webpower.psychstat.org>.
Author: Zhiyong Zhang [aut, cre], Yujiao Mai [aut], Miao Yang [ctb], Ziqian Xu [ctb], Conor McNamara [ctb]
Maintainer: Zhiyong Zhang <johnnyzhz@gmail.com>

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Package VARSELECTEXPOSURE updated to version 1.0.2 with previous version 1.0.1 dated 2022-08-22

Title: Variable Selection Methods Including an Exposure Variable
Description: Utilizes multiple variable selection methods to estimate Average Treatment Effect.
Author: Alex Martinez [aut, cre], Andrew Chapple [aut]
Maintainer: Alex Martinez <ahmartinez283@gmail.com>

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Package sfsmisc updated to version 1.1-15 with previous version 1.1-14 dated 2022-11-24

Title: Utilities from 'Seminar fuer Statistik' ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich, some of which were ported from S-plus in the 1990s. For graphics, have pretty (Log-scale) axes eaxis(), an enhanced Tukey-Anscombe plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()', pretty arrows, etc. For robustness, have a robust F test and robust range(). For system support, notably on Linux, provides 'Sys.*()' functions with more access to system and CPU information. Finally, miscellaneous utilities such as simple efficient prime numbers, integer codes, Duplicated(), toLatex.numeric() and is.whole().
Author: Martin Maechler [aut, cre] , Werner Stahel [ctb] , f.robftest, last, p.scales, p.dnorm), Andreas Ruckstuhl [ctb] , p.profileTraces, p.res.2x), Christian Keller [ctb] , p.tachoPlot), Kjetil Halvorsen [ctb] , ecdf.ksCI), Alain Hauser [ctb] , is.whole, [...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>

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Package itol.toolkit updated to version 1.1.5 with previous version 1.1.0 dated 2023-02-12

Title: Helper Functions for 'Interactive Tree Of Life'
Description: The 'Interactive Tree Of Life' <https://itol.embl.de/> online server can edit and annotate trees interactively. The 'itol.toolkit' package can support all types of annotation templates.
Author: Tong Zhou [aut, cre]
Maintainer: Tong Zhou <tongzhou2017@gmail.com>

Diff between itol.toolkit versions 1.1.0 dated 2023-02-12 and 1.1.5 dated 2023-04-20

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Package wrProteo updated to version 1.9.0 with previous version 1.8.0 dated 2023-03-23

Title: Proteomics Data Analysis Functions
Description: Data analysis of proteomics experiments by mass spectrometry is supported by this collection of functions mostly dedicated to the analysis of (bottom-up) quantitative (XIC) data. Fasta-formatted proteomes (eg from UniProt Consortium <doi:10.1093/nar/gky1049>) can be read with automatic parsing and multiple annotation types (like species origin, abbreviated gene names, etc) extracted. Initial results from multiple software for protein (and peptide) quantitation can be imported (to a common format): MaxQuant (Tyanova et al 2016 <doi:10.1038/nprot.2016.136>), Dia-NN (Demichev et al 2020 <doi:10.1038/s41592-019-0638-x>), Fragpipe(da Veiga et al 2020, <doi:10.1038/s41592-020-0912-y>), MassChroq (Valot et al 2011] <doi:10.1002/pmic.201100120>), OpenMS (<doi:10.1038/nmeth.3959>), ProteomeDiscoverer and Proline (Bouyssie et al 2020 <doi:10.1093/bioinformatics/btaa118>). Meta-data provided by initial analysis software and/or in sdrf format can be integr [...truncated...]
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>

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New package tdsa with initial version 1.0-0
Package: tdsa
Version: 1.0-0
Date: 2023-04-19
Title: Time-Dependent Sensitivity Analysis
Depends: R (>= 3.2.0)
Imports: deSolve (>= 1.10-6), mathjaxr (>= 0.8-3), numDeriv (>= 2006.4-1)
Description: Functions that can be used to calculate time-dependent state and parameter sensitivities for both continuous- and discrete-time deterministic models. See Ng et al. (in review) <doi:10.1101/2023.04.13.536769> for more information about time-dependent sensitivity analysis.
License: GPL-3
URL: https://github.com/weehaong/tdsa
BugReports: https://github.com/weehaong/tdsa/issues
NeedsCompilation: no
Packaged: 2023-04-19 16:41:21 UTC; wn68
Author: Wee Hao Ng [aut, cre], Christopher R. Myers [ctb], Scott H. McArt [ctb], Stephen P. Ellner [ctb]
Maintainer: Wee Hao Ng <wn68@cornell.edu>
Repository: CRAN
Date/Publication: 2023-04-20 16:30:02 UTC

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New package survivalSL with initial version 0.9
Package: survivalSL
Title: Super Learner for Survival Prediction from Censored Data
Version: 0.9
Depends: R (>= 4.0.0), splines, survival, reticulate, tune
Imports: date, graphics, MASS, nnet, kernlab, glmnet, caret, SuperLearner, flexsurv, randomForestSRC, survivalmodels, prodlim, hdnom, glmnetUtils, mosaic, mosaicCalc, cubature, timeROC, rpart, methods
Description: Several functions and S3 methods to construct a super learner in the presence of censored times-to-event and to evaluate its prognostic capacities.
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: no
Packaged: 2023-04-20 07:45:44 UTC; foucher-y
Author: Yohann Foucher [aut, cre] , Camille Sabathe [aut]
Maintainer: Yohann Foucher <yohann.foucher@univ-poitiers.fr>
Repository: CRAN
Date/Publication: 2023-04-20 17:20:02 UTC

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New package SPARRAfairness with initial version 0.0.0.1
Package: SPARRAfairness
Title: Analysis of Differential Behaviour of SPARRA Score Across Demographic Groups
Version: 0.0.0.1
Maintainer: James Liley <james.liley@durham.ac.uk>
Description: The SPARRA risk score (Scottish Patients At Risk of admission and Re-Admission) estimates yearly risk of emergency hospital admission using electronic health records on a monthly basis for most of the Scottish population. This package implements a suite of functions used to analyse the behaviour and performance of the score, focusing particularly on differential performance over demographically-defined groups. It includes useful utility functions to plot receiver-operator-characteristic, precision-recall and calibration curves, draw stock human figures, estimate counterfactual quantities without the need to re-compute risk scores, to simulate a semi-realistic dataset.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0), stats, graphics, grDevices, matrixStats, mvtnorm, cvAUC, ranger
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-04-20 08:13:46 UTC; vwbw55
Author: Ioanna Thoma [aut] , Catalina Vallejos [ctb] , Louis Aslett [ctb] , Jill Ireland [ctb] , Simon Rogers [ctb] , James Liley [cre, aut]
Repository: CRAN
Date/Publication: 2023-04-20 17:22:34 UTC

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Package seq2R updated to version 2.0.0 with previous version 1.1.0 dated 2023-01-06

Title: Simple Method to Detect Compositional Changes in Genomic Sequences
Description: This software is useful for loading '.fasta' or '.gbk' files, and for retrieving sequences from 'GenBank' dataset <https://www.ncbi.nlm.nih.gov/genbank/>. This package allows to detect differences or asymmetries based on nucleotide composition by using local linear kernel smoothers. Also, it is possible to draw inference about critical points (i. e. maximum or minimum points) related with the derivative curves. Additionally, bootstrap methods have been used for estimating confidence intervals and speed computational techniques (binning techniques) have been implemented in 'seq2R'.
Author: Nora M. Villanueva [aut, cre] , Marta Sestelo [aut] , Alan Miller [ctb]
Maintainer: Nora M. Villanueva <nmvillanueva@uvigo.es>

Diff between seq2R versions 1.1.0 dated 2023-01-06 and 2.0.0 dated 2023-04-20

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New package myCRAN with initial version 1.0
Package: myCRAN
Version: 1.0
Date: 2023-04-14
Title: Graph of Daily and Cumulative Downloads of your Packages
Maintainer: Barry Zeeberg <barryz2013@gmail.com>
Author: Barry Zeeberg [aut, cre]
Depends: R (>= 4.2.0)
Imports: cranlogs, grDevices, graphics
Description: Plot the daily and cumulative number of downloads of your packages. It is designed to be slightly more convenient than the several similar programs. If you want to run this each morning, you do not need to keep typing in the names of your packages. Also, this combines the daily and cumulative counts in one run, you do not need to run separate programs to get both types of information.
License: GPL (>= 2)
Encoding: UTF-8
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2023-04-19 13:32:18 UTC; barryzeeberg
Repository: CRAN
Date/Publication: 2023-04-20 16:22:32 UTC

More information about myCRAN at CRAN
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Package glmmrBase updated to version 0.3.1 with previous version 0.2.5 dated 2023-02-24

Title: Generalised Linear Mixed Models in R
Description: Specification of generalised linear mixed models with a range of related functions and calculations. The package provides classes 'Covariance', 'MeanFunction' and 'Model', which allow for flexible specification of generalised linear mixed models, as well as functionality to produce relevant matrices, values, and analyses. See <https://github.com/samuel-watson/glmmrBase/blob/master/README.md> for a detailed manual.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>

Diff between glmmrBase versions 0.2.5 dated 2023-02-24 and 0.3.1 dated 2023-04-20

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New package geessbin with initial version 0.1.1
Package: geessbin
Title: Modified Generalized Estimating Equations for Binary Outcome
Version: 0.1.1
Maintainer: Ryota Ishii <r.ishii0808@gmail.com>
Description: Analyze small-sample clustered or longitudinal data with binary outcome using modified generalized estimating equations with bias-adjusted covariance estimator. The package provides any combination of three modified generalized estimating equations and 11 bias-adjusted covariance estimators.
Depends: R (>= 3.5.0)
Imports: MASS (>= 7.3-45)
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
URL: https://github.com/rtishii/geessbin
Suggests: testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2023-04-20 09:37:33 UTC; rishii
Author: Ryota Ishii [aut, cre], Tomohiro Ohigashi [ctb], Kazushi Maruo [ctb], Masahiko Gosho [ctb]
Repository: CRAN
Date/Publication: 2023-04-20 17:32:30 UTC

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New package allMT with initial version 0.1.0
Package: allMT
Title: Acute Lymphoblastic Leukemia Maintenance Therapy Analysis
Version: 0.1.0
Maintainer: Tushar Mungle <tushar.mungle@gmail.com>
Description: Evaluates acute lymphoblastic leukemia maintenance therapy practice at patient and cohort level.
License: GPL (>= 3)
Encoding: UTF-8
Imports: dplyr (>= 1.0.10), ggplot2 (>= 3.3.6), htmlTable (>= 2.2.1), plyr (>= 1.8.6), readxl (>= 1.3.1), reshape2 (>= 1.4.4), rio (>= 0.5.29), scales (>= 1.2.1), stringr (>= 1.4.1), survival (>= 3.2.11), survminer (>= 0.4.9), tibble (>= 3.1.8), tools (>= 3.6.1), utils (>= 3.6.1)
Suggests: bibtex (>= 0.5.0), bookdown (>= 0.30), knitr (>= 1.39), rmarkdown (>= 2.18)
VignetteBuilder: knitr
URL: https://github.com/tmungle/allMT, https://tmungle.github.io/allMT/
BugReports: https://github.com/tmungle/allMT/issues
Depends: R (>= 2.10)
LazyData: true
NeedsCompilation: no
Packaged: 2023-04-20 10:57:10 UTC; Shubham
Author: Tushar Mungle [aut, cre] , Ananya Mahadevan [aut] , Shekhar Krishnan [aut]
Repository: CRAN
Date/Publication: 2023-04-20 17:32:33 UTC

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New package GPUmatrix with initial version 0.1.0
Package: GPUmatrix
Title: Basic Linear Algebra with GPU
Version: 0.1.0
Description: Motivation: GPU power is a great resource for computational biology specifically in statistics and linear algebra. Unfortunately, very few packages connect R with the GPU and none of them are transparent enough to perform the computations on the GPU without substantial changes to the code. Most of them lack proper maintenance: several of the previous attempts were removed from the corresponding repositories. It would be desirable to have an R package, properly maintained, that exploits the use of the GPU with minimal changes in the existing code. Results: We have developed the 'GPUMatrix' package. 'GPUMatrix' mimics the behavior of the Matrix package and extends R to use the GPU for computations. It is easy to learn and very few changes in the code are required to work on the GPU. 'GPUMatrix' relies on either 'Tensorflow' or 'Torch' R packages to perform the GPU operations. Its vignette shows some toy examples on non-negative factorization and other factorization used in 'bioinformatic [...truncated...]
Depends: R (>= 4.1)
Imports: stats, methods
Suggests: torch, tensorflow, Matrix, matrixStats, float, MASS, knitr, rmarkdown
VignetteBuilder: knitr
License: Artistic-2.0
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2023-04-20 07:24:53 UTC; clobatofern
Author: Cesar Lobato-Fernandez [aut, cre], Juan A.Ferrer-Bonsoms [aut], Angel Rubio [aut, ctb]
Maintainer: Cesar Lobato-Fernandez <clobatofern@unav.es>
Repository: CRAN
Date/Publication: 2023-04-20 16:52:38 UTC

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New package ggragged with initial version 0.1.0
Package: ggragged
Title: Ragged Grids for 'ggplot2'
Version: 0.1.0
Description: Extend 'ggplot2' facets to panel layouts arranged in a grid with ragged edges. facet_ragged_rows() groups panels in rows of (potentially) varying lengths, facet_ragged_cols() does the same for columns. These can be useful, for example, to represent nested or partially crossed relationships between faceting variables.
License: MIT + file LICENSE
URL: https://github.com/mikmart/ggragged, https://mikmart.github.io/ggragged/
BugReports: https://github.com/mikmart/ggragged/issues
Depends: ggplot2
Imports: gtable, rlang, vctrs
Suggests: covr, ragg, testthat (>= 3.0.0), vdiffr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2023-04-19 21:08:05 UTC; Mikko
Author: Mikko Marttila [aut, cre, cph]
Maintainer: Mikko Marttila <mikkmart@protonmail.com>
Repository: CRAN
Date/Publication: 2023-04-20 16:42:32 UTC

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Package GET updated to version 0.4 with previous version 0.3-2 dated 2022-11-16

Title: Global Envelopes
Description: Implementation of global envelopes for a set of general d-dimensional vectors T in various applications. A 100(1-alpha)% global envelope is a band bounded by two vectors such that the probability that T falls outside this envelope in any of the d points is equal to alpha. Global means that the probability is controlled simultaneously for all the d elements of the vectors. The global envelopes can be used for graphical Monte Carlo and permutation tests where the test statistic is a multivariate vector or function (e.g. goodness-of-fit testing for point patterns and random sets, functional analysis of variance, functional general linear model, n-sample test of correspondence of distribution functions), for central regions of functional or multivariate data (e.g. outlier detection, functional boxplot) and for global confidence and prediction bands (e.g. confidence band in polynomial regression, Bayesian posterior prediction). See Myllymäki and Mrkvička (2020) <arXiv:1911.06583>, Myl [...truncated...]
Author: Mari Myllymaeki [aut, cre], Tomas Mrkvicka [aut], Jiri Dvorak [ctb], Pavel Grabarnik [ctb], Ute Hahn [ctb], Mikko Kuronen [ctb], Michael Rost [ctb], Henri Seijo [ctb]
Maintainer: Mari Myllymaeki <mari.myllymaki@luke.fi>

Diff between GET versions 0.3-2 dated 2022-11-16 and 0.4 dated 2023-04-20

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New package fixr with initial version 0.1.0
Package: fixr
Title: Fixing Data Made Easy for Statistical Analysis
Version: 0.1.0
Description: A set of functions that facilitate basic data manipulation and cleaning for statistical analysis including functions for finding and fixing duplicate rows and columns, missing values, outliers, and special characters in column and row names and functions for checking data consistency, distribution, quality, reliability, and structure.
License: GPL-3
URL: https://github.com/ambuvjyn/fixr
Encoding: UTF-8
Imports: RCurl, httr, xml2
NeedsCompilation: no
Packaged: 2023-04-19 14:10:55 UTC; ambuv
Author: Ambu Vijayan [aut, cre] , J. Sreekumar [aut]
Maintainer: Ambu Vijayan <ambuvjyn@gmail.com>
Repository: CRAN
Date/Publication: 2023-04-20 16:32:31 UTC

More information about fixr at CRAN
Permanent link

Package ecb updated to version 0.4.2 with previous version 0.4.1 dated 2022-12-15

Title: Programmatic Access to the European Central Bank's Statistical Data Warehouse
Description: Provides an interface to the 'European Central Bank's Statistical Data Warehouse' API <https://sdw.ecb.europa.eu/>, allowing for programmatic retrieval of a vast quantity of statistical data.
Author: Eric Persson [aut, cre]
Maintainer: Eric Persson <expersso5@gmail.com>

Diff between ecb versions 0.4.1 dated 2022-12-15 and 0.4.2 dated 2023-04-20

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Package climatol updated to version 4.0.0 with previous version 3.1.2 dated 2019-08-05

Title: Climate Tools (Series Homogenization and Derived Products)
Description: Functions for the quality control, homogenization and missing data filling of climatological series and to obtain climatological summaries and grids from the results. Also functions to display wind-roses, meteograms, Walter&Lieth diagrams, and more.
Author: Jose A. Guijarro <jaguijarro21@gmail.com>
Maintainer: Jose A. Guijarro <jaguijarro21@gmail.com>

Diff between climatol versions 3.1.2 dated 2019-08-05 and 4.0.0 dated 2023-04-20

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Package bigrquery updated to version 1.4.2 with previous version 1.4.1 dated 2022-10-27

Title: An Interface to Google's 'BigQuery' 'API'
Description: Easily talk to Google's 'BigQuery' database from R.
Author: Hadley Wickham [aut, cre] , Jennifer Bryan [aut] , Kungliga Tekniska Hoegskolan [ctb] , The NetBSD Foundation, Inc. [ctb] , Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>

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Package tidytable updated to version 0.10.1 with previous version 0.10.0 dated 2023-03-09

Title: Tidy Interface to 'data.table'
Description: A tidy interface to 'data.table', giving users the speed of 'data.table' while using tidyverse-like syntax.
Author: Mark Fairbanks [aut, cre], Abdessabour Moutik [ctb], Matt Carlson [ctb], Ivan Leung [ctb], Ross Kennedy [ctb], Robert On [ctb], Alexander Sevostianov [ctb], Koen ter Berg [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>

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Package pak updated to version 0.5.0 with previous version 0.4.0 dated 2023-01-15

Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and more reliable. In particular, it performs all HTTP operations in parallel, so metadata resolution and package downloads are fast. Metadata and package files are cached on the local disk as well. 'pak' has a dependency solver, so it finds version conflicts before performing the installation. This version of 'pak' supports CRAN, 'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre], Jim Hester [aut], RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>

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Package groundhog updated to version 3.0.0 with previous version 2.2.1 dated 2023-03-04

Title: Version-Control for CRAN, GitHub, and GitLab Packages
Description: Make R scripts reproducible, by ensuring that every time a given script is run, the same version of the used packages are loaded (instead of whichever version the user running the script happens to have installed). This is achieved by using the command groundhog.library() instead of the base command library(), and including a date in the call. The date is used to call on the same version of the package every time (the most recent version available at that date). Load packages from CRAN, GitHub, or Gitlab.
Author: Uri Simonsohn [aut, cre] , Hugo Gruson [ctb, aut]
Maintainer: Uri Simonsohn <urisohn@gmail.com>

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Package gdistance updated to version 1.6.2 with previous version 1.6 dated 2022-10-10

Title: Distances and Routes on Geographical Grids
Description: Provides classes and functions to calculate various distance measures and routes in heterogeneous geographic spaces represented as grids. The package implements measures to model dispersal histories first presented by van Etten and Hijmans (2010) <doi:10.1371/journal.pone.0012060>. Least-cost distances as well as more complex distances based on (constrained) random walks can be calculated. The distances implemented in the package are used in geographical genetics, accessibility indicators, and may also have applications in other fields of geospatial analysis.
Author: Jacob van Etten [aut] , Kaue de Sousa [ctb] , Andrew Marx [cre, ctb]
Maintainer: Andrew Marx <ajm.rpackages@gmail.com>

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Package batchtools updated to version 0.9.17 with previous version 0.9.16 dated 2023-02-03

Title: Tools for Computation on Batch Systems
Description: As a successor of the packages 'BatchJobs' and 'BatchExperiments', this package provides a parallel implementation of the Map function for high performance computing systems managed by schedulers 'IBM Spectrum LSF' (<https://www.ibm.com/products/hpc-workload-management>), 'OpenLava' (<https://www.openlava.org/>), 'Univa Grid Engine'/'Oracle Grid Engine' (<https://www.univa.com/>), 'Slurm' (<https://slurm.schedmd.com/>), 'TORQUE/PBS' (<https://adaptivecomputing.com/cherry-services/torque-resource-manager/>), or 'Docker Swarm' (<https://docs.docker.com/engine/swarm/>). A multicore and socket mode allow the parallelization on a local machines, and multiple machines can be hooked up via SSH to create a makeshift cluster. Moreover, the package provides an abstraction mechanism to define large-scale computer experiments in a well-organized and reproducible way.
Author: Michel Lang [cre, aut] , Bernd Bischl [aut], Dirk Surmann [ctb]
Maintainer: Michel Lang <michellang@gmail.com>

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Package tidyAML updated to version 0.0.2 with previous version 0.0.1 dated 2023-02-16

Title: Automatic Machine Learning with 'tidymodels'
Description: The goal of this package will be to provide a simple interface for automatic machine learning that fits the 'tidymodels' framework. The intention is to work for regression and classification problems with a simple verb framework.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>

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Package nhdR updated to version 0.6.0 with previous version 0.5.9 dated 2022-10-08

Title: Tools for Working with the National Hydrography Dataset
Description: Tools for working with the National Hydrography Dataset, with functions for querying, downloading, and networking both the NHD <https://www.usgs.gov/national-hydrography> and NHDPlus <https://www.epa.gov/waterdata/nhdplus-national-hydrography-dataset-plus> datasets.
Author: Jemma Stachelek [aut, cre]
Maintainer: Jemma Stachelek <jemma.stachelek@gmail.com>

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Package dplyr updated to version 1.1.2 with previous version 1.1.1 dated 2023-03-22

Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame like objects, both in memory and out of memory.
Author: Hadley Wickham [aut, cre] , Romain Francois [aut] , Lionel Henry [aut], Kirill Mueller [aut] , Davis Vaughan [aut] , Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>

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Package adjustedCurves updated to version 0.10.1 with previous version 0.10.0 dated 2023-02-16

Title: Confounder-Adjusted Survival Curves and Cumulative Incidence Functions
Description: Estimate and plot confounder-adjusted survival curves using either 'Direct Adjustment', 'Direct Adjustment with Pseudo-Values', various forms of 'Inverse Probability of Treatment Weighting', two forms of 'Augmented Inverse Probability of Treatment Weighting' and 'Empirical Likelihood Estimation'. Also includes a significance test for the difference between two adjusted survival curves and the calculation of adjusted restricted mean survival times. Additionally enables the user to estimate and plot cause-specific confounder-adjusted cumulative incidence functions in the competing risks setting using the same methods (with some exceptions). For details, see Denz et. al (2023) <doi:10.1002/sim.9681>.
Author: Robin Denz [aut, cre]
Maintainer: Robin Denz <robin.denz@rub.de>

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Package xfun updated to version 0.39 with previous version 0.38 dated 2023-03-24

Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] , Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brueggemann [ctb] , Christophe Dervieux [ctb], Posit Software, PBC [cph, fnd]
Maintainer: Yihui Xie <xie@yihui.name>

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Package rolog updated to version 0.9.12 with previous version 0.9.11 dated 2023-01-27

Title: Query 'SWI'-'Prolog' from R
Description: This R package connects to 'SWI'-'Prolog', <https://www.swi-prolog.org/>, so that R can send deterministic and non-deterministic queries to 'prolog' ('consult', 'query'/'submit', 'once', 'findall').
Author: Matthias Gondan [aut, com, cre] , European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>

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Package rfacebookstat updated to version 2.9.2 with previous version 2.8.1 dated 2023-03-17

Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager from Facebook Marketing API into R. For more details see official documents by Facebook Marketing API <https://developers.facebook.com/docs/marketing-apis/>.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>

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Package qrng updated to version 0.0-9 with previous version 0.0-8 dated 2020-11-26

Title: (Randomized) Quasi-Random Number Generators
Description: Functionality for generating (randomized) quasi-random numbers in high dimensions.
Author: Marius Hofert [aut, cre], Christiane Lemieux [aut]
Maintainer: Marius Hofert <mhofert@hku.hk>

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Package mlr3tuningspaces updated to version 0.4.0 with previous version 0.3.5 dated 2023-03-08

Title: Search Spaces for 'mlr3'
Description: Collection of search spaces for hyperparameter optimization in the 'mlr3' ecosystem. It features ready-to-use search spaces for many popular machine learning algorithms. The search spaces are from scientific articles and work for a wide range of data sets.
Author: Marc Becker [cre, aut] , Michel Lang [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>

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Package mev updated to version 1.15 with previous version 1.14 dated 2022-04-25

Title: Modelling of Extreme Values
Description: Various tools for the analysis of univariate, multivariate and functional extremes. Exact simulation from max-stable processes [Dombry, Engelke and Oesting (2016) <doi:10.1093/biomet/asw008>, R-Pareto processes for various parametric models, including Brown-Resnick (Wadsworth and Tawn, 2014, <doi:10.1093/biomet/ast042>) and Extremal Student (Thibaud and Opitz, 2015, <doi:10.1093/biomet/asv045>). Threshold selection methods, including Wadsworth (2016) <doi:10.1080/00401706.2014.998345>, and Northrop and Coleman (2014) <doi:10.1007/s10687-014-0183-z>. Multivariate extreme diagnostics. Estimation and likelihoods for univariate extremes, e.g., Coles (2001) <doi:10.1007/978-1-4471-3675-0>.
Author: Leo Belzile [aut, cre] , Jennifer L. Wadsworth [aut], Paul J. Northrop [aut], Scott D. Grimshaw [aut], Jin Zhang [ctb], Michael A. Stephens [ctb], Art B. Owen [ctb], Raphael Huser [aut]
Maintainer: Leo Belzile <belzilel@gmail.com>

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Package timeperiodsR updated to version 0.7.1 with previous version 0.6.2 dated 2020-04-03

Title: Simple Definition Of Time Intervals
Description: Simple definition of time intervals for the current, previous, and next week, month, quarter and year.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>

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Package cropcircles updated to version 0.2.2 with previous version 0.2.1 dated 2023-02-17

Title: Crops an Image to a Circle
Description: Images are cropped to a circle with a transparent background. The function takes a vector of images, either local or from a link, and circle crops the image. Paths to the cropped image are returned for plotting with 'ggplot2'.
Author: Daniel Oehm [aut, cre]
Maintainer: Daniel Oehm <danieloehm@gmail.com>

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Package RsSimulx updated to version 2023.1 with previous version 2.0.2 dated 2022-11-23

Title: Extension of 'lixoftConnectors' for 'Simulx'
Description: Provides useful tools which supplement the use of 'Simulx' software and 'R' connectors ('Monolix Suite'). 'Simulx' is an easy, efficient and flexible application for clinical trial simulations. You need 'Simulx' software to be installed in order to use 'RsSimulx' package. Among others tasks, 'RsSimulx' provides the same functions as package 'mlxR' does with a compatibility with 'Simulx' software.
Author: Clemence Pinaud [aut], Jonathan Chauvin [aut], Marc Lavielle [ctb], Frano Mihaljevic [aut, cre]
Maintainer: Frano Mihaljevic <support@lixoft.com>

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Package glmmrOptim updated to version 0.2.4 with previous version 0.2.3 dated 2023-02-24

Title: Approximate Optimal Experimental Designs Using Generalised Linear Mixed Models
Description: Optimal design analysis algorithms for any study design that can be represented or modelled as a generalised linear mixed model including cluster randomised trials, cohort studies, spatial and temporal epidemiological studies, and split-plot designs. See <https://github.com/samuel-watson/glmmrBase/blob/master/README.md> for a detailed manual on model specification. A detailed discussion of the methods in this package can be found in Watson and Pan (2022) <arXiv:2207.09183>.
Author: Sam Watson [aut, cre], Yi Pan [aut]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>

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Package gKRLS updated to version 1.0.2 with previous version 1.0.1 dated 2023-04-17

Title: Generalized Kernel Regularized Least Squares
Description: Kernel regularized least squares, also known as kernel ridge regression, is a flexible machine learning method. This package implements this method by providing a smooth term for use with 'mgcv' and uses random sketching to facilitate scalable estimation on large datasets. It provides additional functions for calculating marginal effects after estimation and for use with ensembles ('SuperLearning'), double/debiased machine learning ('DoubleML'), and robust/clustered standard errors ('sandwich'). Chang and Goplerud (2023) <arXiv:2209.14355> provide further details.
Author: Qing Chang [aut], Max Goplerud [aut, cre]
Maintainer: Max Goplerud <mgoplerud@pitt.edu>

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Package RawHummus updated to version 0.3.3 with previous version 0.3.0 dated 2023-03-23

Title: Raw Data Quality Control Tool for LC-MS System
Description: Assess LC–MS system performance by visualizing instrument log files and monitoring raw quality control samples within a project.
Author: Yonghui Dong [cre, aut]
Maintainer: Yonghui Dong <yonghui.dong@gmail.com>

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Package leaflet.extras2 updated to version 1.2.1 with previous version 1.2.0 dated 2022-05-10

Title: Extra Functionality for 'leaflet' Package
Description: Several 'leaflet' plugins are integrated, which are available as extension to the 'leaflet' package.
Author: Gatscha Sebastian [aut, cre], Ricardo Rodrigo Basa [ctb], Jeffrey O Hanson [ctb]
Maintainer: Gatscha Sebastian <sebastian_gatscha@gmx.at>

Diff between leaflet.extras2 versions 1.2.0 dated 2022-05-10 and 1.2.1 dated 2023-04-20

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 leaflet.extras2-1.2.1/leaflet.extras2/DESCRIPTION                                                |   10 
 leaflet.extras2-1.2.1/leaflet.extras2/MD5                                                        |   71 
 leaflet.extras2-1.2.1/leaflet.extras2/NEWS.md                                                    |    7 
 leaflet.extras2-1.2.1/leaflet.extras2/R/arrowhead.R                                              |    9 
 leaflet.extras2-1.2.1/leaflet.extras2/R/heightgraph.R                                            |    2 
 leaflet.extras2-1.2.1/leaflet.extras2/R/hexbin.R                                                 |    2 
 leaflet.extras2-1.2.1/leaflet.extras2/R/mapkeyIcon.R                                             |    6 
 leaflet.extras2-1.2.1/leaflet.extras2/R/playback.R                                               |   12 
 leaflet.extras2-1.2.1/leaflet.extras2/R/sidebar.R                                                |   32 
 leaflet.extras2-1.2.1/leaflet.extras2/R/wms.R                                                    |    8 
 leaflet.extras2-1.2.1/leaflet.extras2/inst/examples/heightgraph_app.R                            |    3 
 leaflet.extras2-1.2.1/leaflet.extras2/inst/examples/hexbin_app.R                                 |    4 
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 leaflet.extras2-1.2.1/leaflet.extras2/inst/examples/sidebar_app.R                                |   95 
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 leaflet.extras2-1.2.1/leaflet.extras2/inst/htmlwidgets/lfx-hexbin/d3.js                          |10302 +++++-----
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 leaflet.extras2-1.2.1/leaflet.extras2/man/addHexbin.Rd                                           |    2 
 leaflet.extras2-1.2.1/leaflet.extras2/man/addPlayback.Rd                                         |    5 
 leaflet.extras2-1.2.1/leaflet.extras2/man/addSidebar.Rd                                          |    7 
 leaflet.extras2-1.2.1/leaflet.extras2/man/addWMS.Rd                                              |    6 
 leaflet.extras2-1.2.1/leaflet.extras2/man/arrowheadOptions.Rd                                    |    4 
 leaflet.extras2-1.2.1/leaflet.extras2/man/closeSidebar.Rd                                        |    2 
 leaflet.extras2-1.2.1/leaflet.extras2/man/makeMapkeyIcon.Rd                                      |    6 
 leaflet.extras2-1.2.1/leaflet.extras2/man/mapkeyIcons.Rd                                         |    6 
 leaflet.extras2-1.2.1/leaflet.extras2/man/openSidebar.Rd                                         |    6 
 leaflet.extras2-1.2.1/leaflet.extras2/man/removeSidebar.Rd                                       |    2 
 leaflet.extras2-1.2.1/leaflet.extras2/man/to_jsonformat.Rd                                       |    4 
 leaflet.extras2-1.2.1/leaflet.extras2/tests/testthat/test-sidebar.R                              |   16 
 leaflet.extras2-1.2.1/leaflet.extras2/tests/testthat/test-velocity.R                             |    3 
 38 files changed, 6415 insertions(+), 5534 deletions(-)

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Package grainscape updated to version 0.4.4 with previous version 0.4.3 dated 2020-09-01

Title: Landscape Connectivity, Habitat, and Protected Area Networks
Description: Given a landscape resistance surface, creates minimum planar graph (Fall et al. (2007) <doi:10.1007/s10021-007-9038-7>) and grains of connectivity (Galpern et al. (2012) <doi:10.1111/j.1365-294X.2012.05677.x>) models that can be used to calculate effective distances for landscape connectivity at multiple scales. Documentation is provided by several vignettes, and a paper (Chubaty, Galpern & Doctolero (2020) <doi:10.1111/2041-210X.13350>).
Author: Paul Galpern [aut, cph] , Sam Doctolero [aut], Alex M Chubaty [aut, cre]
Maintainer: Alex M Chubaty <alex.chubaty@gmail.com>

Diff between grainscape versions 0.4.3 dated 2020-09-01 and 0.4.4 dated 2023-04-20

 grainscape-0.4.3/grainscape/R/deprecated.R                                |only
 grainscape-0.4.4/grainscape/DESCRIPTION                                   |   22 
 grainscape-0.4.4/grainscape/MD5                                           |  156 ++--
 grainscape-0.4.4/grainscape/NAMESPACE                                     |    7 
 grainscape-0.4.4/grainscape/NEWS.md                                       |   18 
 grainscape-0.4.4/grainscape/R/GOC.R                                       |  132 ++-
 grainscape-0.4.4/grainscape/R/MPG.R                                       |  218 +++--
 grainscape-0.4.4/grainscape/R/classes.R                                   |  126 +--
 grainscape-0.4.4/grainscape/R/corridor.R                                  |   85 +-
 grainscape-0.4.4/grainscape/R/distance.R                                  |   33 
 grainscape-0.4.4/grainscape/R/export.R                                    |  190 ++---
 grainscape-0.4.4/grainscape/R/extract.R                                   |   16 
 grainscape-0.4.4/grainscape/R/ggGS.R                                      |  207 ++---
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 grainscape-0.4.4/grainscape/inst/doc/grainscape_vignette.R                |  376 ++++++----
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 grainscape-0.4.4/grainscape/inst/examples/example_export.R                |   17 
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 grainscape-0.4.4/grainscape/inst/examples/example_preamble_GOC.R          |    1 
 grainscape-0.4.4/grainscape/inst/examples/example_preamble_MPG.R          |    1 
 grainscape-0.4.4/grainscape/man/GOC.Rd                                    |   19 
 grainscape-0.4.4/grainscape/man/MPG.Rd                                    |   10 
 grainscape-0.4.4/grainscape/man/corridor-class.Rd                         |    6 
 grainscape-0.4.4/grainscape/man/corridor.Rd                               |   13 
 grainscape-0.4.4/grainscape/man/distance.Rd                               |    9 
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 grainscape-0.4.4/grainscape/man/grain-class.Rd                            |    4 
 grainscape-0.4.4/grainscape/man/grain.Rd                                  |   25 
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 grainscape-0.4.4/grainscape/man/graphdf.Rd                                |   17 
 grainscape-0.4.4/grainscape/man/habConnEngine.Rd                          |    2 
 grainscape-0.4.4/grainscape/man/mpg-class.Rd                              |    2 
 grainscape-0.4.4/grainscape/man/patchFilter.Rd                            |   15 
 grainscape-0.4.4/grainscape/man/plot.Rd                                   |   32 
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 70 files changed, 2020 insertions(+), 1530 deletions(-)

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New package GLMMselect with initial version 1.0.0
Package: GLMMselect
Title: Bayesian Model Selection for Generalized Linear Mixed Models
Version: 1.0.0
Description: A Bayesian model selection approach for generalized linear mixed models. Currently, 'GLMMselect' can be used for Poisson GLMM and Bernoulli GLMM. 'GLMMselect' can select fixed effects and random effects simultaneously. Covariance structures for the random effects are a product of a unknown scalar and a known semi-positive definite matrix. 'GLMMselect' can be widely used in areas such as longitudinal studies, genome-wide association studies, and spatial statistics. 'GLMMselect' is based on Xu, Ferreira, Porter, and Franck (202X), Bayesian Model Selection Method for Generalized Linear Mixed Models, Biometrics, under review.
License: GPL-3
Encoding: UTF-8
Imports: stats (>= 4.2.2)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
LazyData: true
Depends: R (>= 3.5.0)
NeedsCompilation: no
Packaged: 2023-04-18 19:05:58 UTC; xushu
Author: Shuangshuang Xu [aut, cre], Marco Ferreira [aut] , Erica Porter [aut], Christopher Franck [aut]
Maintainer: Shuangshuang Xu <xshuangshuang@vt.edu>
Repository: CRAN
Date/Publication: 2023-04-20 08:20:05 UTC

More information about GLMMselect at CRAN
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New package funStatTest with initial version 1.0.2
Package: funStatTest
Title: Statistical Testing for Functional Data
Version: 1.0.2
Description: Implementation of two sample comparison procedures based on median-based statistical tests for functional data, introduced in Smida et al (2022) <doi:10.1080/10485252.2022.2064997>. Other competitive state-of-the-art approaches proposed by Chakraborty and Chaudhuri (2015) <doi:10.1093/biomet/asu072>, Horvath et al (2013) <doi:10.1111/j.1467-9868.2012.01032.x> or Cuevas et al (2004) <doi:10.1016/j.csda.2003.10.021> are also included in the package, as well as procedures to run test result comparisons and power analysis using simulations.
License: AGPL (>= 3)
URL: https://plmlab.math.cnrs.fr/gdurif/funStatTest/,https://gdurif.pages.math.cnrs.fr/funStatTest/
Imports: checkmate, distr, dplyr, ggplot2, magrittr, Matrix, pbapply, stats, stringr, tibble, tidyr, tidyselect, utils
Suggests: knitr, rmarkdown, testthat, vdiffr
VignetteBuilder: knitr
Date/Publication: 2023-04-20 08:30:02 UTC
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2023-04-19 12:26:14 UTC; drg
Author: Zaineb Smida [aut] , Ghislain Durif [aut, cre] , Lionel Cucala [aut]
Maintainer: Ghislain Durif <gd.dev@libertymail.net>
Repository: CRAN

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New package eventstudyr with initial version 1.0.2
Package: eventstudyr
Title: Estimation and Visualization of Linear Panel Event Studies
Version: 1.0.2
Description: Estimates linear panel event study models. Plots coefficients following the recommendations in Freyaldenhoven et al. (2021) <doi:10.3386/w29170>. Includes sup-t bands, testing for key hypotheses, least wiggly path through the Wald region. Allows instrumental variables estimation following Freyaldenhoven et al. (2019) <doi:10.1257/aer.20180609>.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: car, data.table, dplyr, estimatr, ggplot2, MASS, rlang, pracma, stats, stringr
VignetteBuilder: knitr
LazyData: true
Suggests: rmarkdown, knitr, testthat (>= 3.0.0)
Depends: R (>= 3.5.0)
URL: https://github.com/JMSLab/eventstudyr
BugReports: https://github.com/JMSLab/eventstudyr/issues
NeedsCompilation: no
Packaged: 2023-04-19 04:56:42 UTC; emwang
Author: Simon Freyaldenhoven [aut], Christian Hansen [aut], Jorge Perez Perez [aut], Jesse Shapiro [aut], Veli Andirin [aut], Richard Calvo [aut], Santiago Hermo [aut], Nathan Schor [aut], Emily Wang [aut, cre], JMSLab [cph], Ryan Kessler [cph]
Maintainer: Emily Wang <emwang@hbs.edu>
Repository: CRAN
Date/Publication: 2023-04-20 08:20:02 UTC

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Package winch updated to version 0.1.0 with previous version 0.0.12 dated 2023-02-01

Title: Portable Native and Joint Stack Traces
Description: Obtain the native stack trace and fuse it with R's stack trace for easier debugging of R packages with native code.
Author: Kirill Mueller [aut, cre] , R Consortium [fnd], Ian Lance Taylor [aut] , Free Software Foundation [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>

Diff between winch versions 0.0.12 dated 2023-02-01 and 0.1.0 dated 2023-04-20

 winch-0.0.12/winch/tests/testthat/test-add_trace_back.R   |only
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 winch-0.1.0/winch/NAMESPACE                               |    1 
 winch-0.1.0/winch/NEWS.md                                 |   17 
 winch-0.1.0/winch/R/add_trace_back.R                      |   25 
 winch-0.1.0/winch/R/trace_back.R                          |    5 
 winch-0.1.0/winch/R/winch-package.R                       |    1 
 winch-0.1.0/winch/inst/doc/report.html                    |  368 +++++++-------
 winch-0.1.0/winch/man/figures                             |only
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 winch-0.1.0/winch/man/winch_trace_back.Rd                 |    2 
 winch-0.1.0/winch/src/trace_back_backtrace.c              |    2 
 winch-0.1.0/winch/tests/testthat/_snaps/add_trace_back.md |    6 
 winch-0.1.0/winch/tests/testthat/test-trace_back.R        |    2 
 15 files changed, 265 insertions(+), 227 deletions(-)

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Package QuickJSR updated to version 1.0.4 with previous version 1.0.3 dated 2023-04-14

Title: Interface for the 'QuickJS' Lightweight 'JavaScript' Engine
Description: An 'R' interface to the 'QuickJS' portable 'JavaScript' engine. The engine is bundled entirely within the package, requiring no external system dependencies beyond a 'C' compiler.
Author: Andrew R. Johnson [aut, cre] , Fabrice Bellard [ctb, cph] , Charlie Gordon [ctb, cph]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>

Diff between QuickJSR versions 1.0.3 dated 2023-04-14 and 1.0.4 dated 2023-04-20

 QuickJSR-1.0.3/QuickJSR/inst/WORDLIST              |only
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 QuickJSR-1.0.4/QuickJSR/MD5                        |   23 +-
 QuickJSR-1.0.4/QuickJSR/R/flags.R                  |    3 
 QuickJSR-1.0.4/QuickJSR/src/Makevars               |   18 -
 QuickJSR-1.0.4/QuickJSR/src/qjs_impl.c             |    2 
 QuickJSR-1.0.4/QuickJSR/src/quickjs/cutils.c       |    7 
 QuickJSR-1.0.4/QuickJSR/src/quickjs/libbf.c        |    3 
 QuickJSR-1.0.4/QuickJSR/src/quickjs/libregexp.c    |    3 
 QuickJSR-1.0.4/QuickJSR/src/quickjs/libunicode.c   |   53 ++---
 QuickJSR-1.0.4/QuickJSR/src/quickjs/quickjs-libc.c |   12 +
 QuickJSR-1.0.4/QuickJSR/src/quickjs/quickjs.c      |   65 ++++++
 QuickJSR-1.0.4/QuickJSR/src/quickjs/unicode_gen.c  |  213 ++++++++++++++-------
 13 files changed, 283 insertions(+), 125 deletions(-)

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New package panelhetero with initial version 1.0.0
Package: panelhetero
Title: Panel Data Analysis with Heterogeneous Dynamics
Version: 1.0.0
Description: Understanding the dynamics of potentially heterogeneous variables is important in statistical applications. This package provides tools for estimating the degree of heterogeneity across cross-sectional units in the panel data analysis. The methods are developed by Okui and Yanagi (2019) <doi:10.1016/j.jeconom.2019.04.036> and Okui and Yanagi (2020) <doi:10.1093/ectj/utz019>.
Depends: R (>= 3.6)
Encoding: UTF-8
Suggests: testthat, knitr, rmarkdown
License: MIT + file LICENSE
Imports: boot, ggplot2, KernSmooth, Rearrangement, stats
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-04-18 14:44:26 UTC; Takahide Yanagi
Author: Ryo Okui [aut, cph], Takahide Yanagi [aut, cre, cph] , Heejun Lee [aut, cph]
Maintainer: Takahide Yanagi <yanagi@econ.kyoto-u.ac.jp>
Repository: CRAN
Date/Publication: 2023-04-20 08:00:02 UTC

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New package neotoma2 with initial version 1.0.0
Package: neotoma2
Title: Working with the Neotoma Paleoecology Database
Date: 2023-04-17
Version: 1.0.0
URL: https://github.com/NeotomaDB/neotoma2
BugReports: https://github.com/NeotomaDB/neotoma2/issues
Description: Access and manipulation of data using the Neotoma Paleoecology Database. <https://api.neotomadb.org/api-docs/>.
License: MIT + file LICENSE
Encoding: UTF-8
Suggests: testthat, knitr, rmarkdown, Bchron, ggplot2, covr
Imports: rlang, magrittr, sf, geojsonsf, purrr, lubridate, httr, jsonlite, methods, dplyr, gtools, leaflet, mapview, assertthat, stringr, progress, wk, uuid, tidyr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-04-18 03:18:09 UTC; haritoto
Author: Dominguez Vidana Socorro [aut] , Simon Goring [aut, cre]
Maintainer: Simon Goring <goring@wisc.edu>
Repository: CRAN
Date/Publication: 2023-04-20 07:50:02 UTC

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Package gibasa updated to version 0.9.3 with previous version 0.9.2 dated 2023-04-12

Title: An Alternative 'Rcpp' Wrapper of 'MeCab'
Description: A plain 'Rcpp' wrapper of 'MeCab' that can segment Chinese, Japanese, and Korean text into tokens. The main goal of this package is to provide an alternative to 'tidytext' using morphological analysis.
Author: Akiru Kato [aut, cre], Shogo Ichinose [aut], Taku Kudo [aut], Jorge Nocedal [ctb], Nippon Telegraph and Telephone Corporation [cph]
Maintainer: Akiru Kato <paithiov909@gmail.com>

Diff between gibasa versions 0.9.2 dated 2023-04-12 and 0.9.3 dated 2023-04-20

 gibasa-0.9.2/gibasa/src/dictionary_rewriter.cpp |only
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 gibasa-0.9.2/gibasa/src/learner_tagger.cpp      |only
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 gibasa-0.9.3/gibasa/DESCRIPTION                 |    6 
 gibasa-0.9.3/gibasa/MD5                         |   60 +-
 gibasa-0.9.3/gibasa/NEWS.md                     |    4 
 gibasa-0.9.3/gibasa/R/RcppExports.R             |  152 +++----
 gibasa-0.9.3/gibasa/R/other-reexports.R         |   10 
 gibasa-0.9.3/gibasa/R/utils.R                   |  222 +++++-----
 gibasa-0.9.3/gibasa/README.md                   |  510 ++++++++++++------------
 gibasa-0.9.3/gibasa/build/partial.rdb           |binary
 gibasa-0.9.3/gibasa/man/bind_lr.Rd              |   11 
 gibasa-0.9.3/gibasa/man/bind_tf_idf2.Rd         |  160 +++----
 gibasa-0.9.3/gibasa/man/collapse_tokens.Rd      |   86 ++--
 gibasa-0.9.3/gibasa/man/dictionary_info.Rd      |   32 -
 gibasa-0.9.3/gibasa/man/get_transition_cost.Rd  |   48 +-
 gibasa-0.9.3/gibasa/man/gibasa-package.Rd       |   70 +--
 gibasa-0.9.3/gibasa/man/is_blank.Rd             |   48 +-
 gibasa-0.9.3/gibasa/man/lex_density.Rd          |  110 ++---
 gibasa-0.9.3/gibasa/man/mute_tokens.Rd          |   74 +--
 gibasa-0.9.3/gibasa/man/pack.Rd                 |  128 +++---
 gibasa-0.9.3/gibasa/man/posDebugRcpp.Rd         |   46 +-
 gibasa-0.9.3/gibasa/man/posParallelRcpp.Rd      |   46 +-
 gibasa-0.9.3/gibasa/man/prettify.Rd             |   74 +--
 gibasa-0.9.3/gibasa/man/tokenize.Rd             |  124 ++---
 gibasa-0.9.3/gibasa/man/transition_cost.Rd      |   42 -
 gibasa-0.9.3/gibasa/src/dictionary.cpp          |    4 
 gibasa-0.9.3/gibasa/src/mmap.h                  |    2 
 gibasa-0.9.3/gibasa/tools/testdata.R            |   72 +--
 36 files changed, 1078 insertions(+), 1063 deletions(-)

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New package faux with initial version 1.2.1
Package: faux
Title: Simulation for Factorial Designs
Version: 1.2.1
Date: 2023-04-18
Description: Create datasets with factorial structure through simulation by specifying variable parameters. Extended documentation at <https://debruine.github.io/faux/>. Described in DeBruine (2020) <doi:10.5281/zenodo.2669586>.
Depends: R (>= 3.2.4)
Imports: lme4, dplyr, ggplot2 (>= 3.3.0), jsonlite, truncnorm, rlang
License: MIT + file LICENSE
Suggests: testthat (>= 2.1.0), tidyr, knitr, rmarkdown, roxygen2, covr, cowplot, ggExtra, purrr, broom, broom.mixed, psych, lmerTest, kableExtra, glue, openssl, readr, patchwork
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
URL: https://github.com/debruine/faux
BugReports: https://github.com/debruine/faux/issues
NeedsCompilation: no
Packaged: 2023-04-18 15:23:36 UTC; lisad
Author: Lisa DeBruine [aut, cre] , Anna Krystalli [ctb] , Andrew Heiss [ctb]
Maintainer: Lisa DeBruine <debruine@gmail.com>
Repository: CRAN
Date/Publication: 2023-04-20 07:00:11 UTC

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Package AQuadtree updated to version 1.0.3 with previous version 1.0.2 dated 2020-09-08

Title: Confidentiality of Spatial Point Data
Description: Provides an automatic aggregation tool to manage point data privacy, intended to be helpful for the production of official spatial data and for researchers. The package pursues the data accuracy at the smallest possible areas preventing individual information disclosure. The methodology, based on hierarchical geographic data structures performs aggregation and local suppression of point data to ensure privacy as described in Lagonigro, R., Oller, R., Martori J.C. (2017) <doi:10.2436/20.8080.02.55>. The data structures are created following the guidelines for grid datasets from the European Forum for Geography and Statistics.
Author: Raymond Lagonigro [aut, cre] , Ramon Oller [aut] , Joan Carles Martori [aut]
Maintainer: Raymond Lagonigro <raymond.lagonigro@uvic.cat>

Diff between AQuadtree versions 1.0.2 dated 2020-09-08 and 1.0.3 dated 2023-04-20

 AQuadtree-1.0.2/AQuadtree/inst/doc/AQuadtreeUse.html    |only
 AQuadtree-1.0.3/AQuadtree/DESCRIPTION                   |   12 ++--
 AQuadtree-1.0.3/AQuadtree/MD5                           |   26 +++++-----
 AQuadtree-1.0.3/AQuadtree/NEWS                          |    6 ++
 AQuadtree-1.0.3/AQuadtree/R/AQuadtree.R                 |    2 
 AQuadtree-1.0.3/AQuadtree/R/createGrid.R                |   41 ++++------------
 AQuadtree-1.0.3/AQuadtree/R/data.R                      |    2 
 AQuadtree-1.0.3/AQuadtree/build/vignette.rds            |binary
 AQuadtree-1.0.3/AQuadtree/inst/doc/AQuadtreeUse.pdf     |only
 AQuadtree-1.0.3/AQuadtree/man/AQuadtree-package.Rd      |    2 
 AQuadtree-1.0.3/AQuadtree/man/BarcelonaCensusTracts.Rd  |    4 +
 AQuadtree-1.0.3/AQuadtree/man/BarcelonaPop.Rd           |    8 +--
 AQuadtree-1.0.3/AQuadtree/man/CharlestonCensusTracts.Rd |    4 +
 AQuadtree-1.0.3/AQuadtree/man/CharlestonPop.Rd          |    6 +-
 AQuadtree-1.0.3/AQuadtree/man/createGrid.Rd             |    3 +
 15 files changed, 57 insertions(+), 59 deletions(-)

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Package openadds (with last version 0.2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-01-03 0.2.0
2016-08-03 0.1.0

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Package dalmatian (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-11-22 1.0.0
2021-11-03 0.6.3

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Package postGIStools (with last version 0.2.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-09-20 0.2.4
2019-05-03 0.2.3
2018-03-28 0.2.2
2016-10-10 0.2.1
2016-08-29 0.2.0
2016-04-21 0.1.0

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Package ProbReco (with last version 0.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-04-05 0.1.2
2020-09-24 0.1.0.1
2020-08-18 0.1.0

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