Title: Parsing and Evaluation Tools that Provide More Details than the
Default
Description: Parsing and evaluation tools that make it easy to recreate the
command line behaviour of R.
Author: Hadley Wickham [aut],
Yihui Xie [aut, cre] ,
Michael Lawrence [ctb],
Thomas Kluyver [ctb],
Jeroen Ooms [ctb],
Barret Schloerke [ctb],
Adam Ryczkowski [ctb],
Hiroaki Yutani [ctb],
Michel Lang [ctb],
Karolis Koncevicius [ctb],
Posit Software, PBC [cph, [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between evaluate versions 0.20 dated 2023-01-17 and 0.21 dated 2023-05-05
evaluate-0.20/evaluate/R/eval.r |only evaluate-0.20/evaluate/R/graphics.r |only evaluate-0.20/evaluate/R/hooks.r |only evaluate-0.20/evaluate/R/output.r |only evaluate-0.20/evaluate/R/parse.r |only evaluate-0.20/evaluate/R/replay.r |only evaluate-0.20/evaluate/R/traceback.r |only evaluate-0.20/evaluate/R/watcher.r |only evaluate-0.20/evaluate/tests/test-parse.R |only evaluate-0.20/evaluate/tests/test-replay.R |only evaluate-0.20/evaluate/tests/testthat/comment.r |only evaluate-0.20/evaluate/tests/testthat/data.r |only evaluate-0.20/evaluate/tests/testthat/error-complex.r |only evaluate-0.20/evaluate/tests/testthat/error.r |only evaluate-0.20/evaluate/tests/testthat/example-1.r |only evaluate-0.20/evaluate/tests/testthat/ggplot-empty-1.r |only evaluate-0.20/evaluate/tests/testthat/ggplot-empty-2.r |only evaluate-0.20/evaluate/tests/testthat/ggplot-loop.r |only evaluate-0.20/evaluate/tests/testthat/ggplot.r |only evaluate-0.20/evaluate/tests/testthat/interleave-1.r |only evaluate-0.20/evaluate/tests/testthat/interleave-2.r |only evaluate-0.20/evaluate/tests/testthat/order.r |only evaluate-0.20/evaluate/tests/testthat/parse.r |only evaluate-0.20/evaluate/tests/testthat/plot-additions.r |only evaluate-0.20/evaluate/tests/testthat/plot-clip.r |only evaluate-0.20/evaluate/tests/testthat/plot-last-comment.r |only evaluate-0.20/evaluate/tests/testthat/plot-loop.r |only evaluate-0.20/evaluate/tests/testthat/plot-multi-layout.r |only evaluate-0.20/evaluate/tests/testthat/plot-multi-layout2.r |only evaluate-0.20/evaluate/tests/testthat/plot-multi-missing.r |only evaluate-0.20/evaluate/tests/testthat/plot-multi.r |only evaluate-0.20/evaluate/tests/testthat/plot-new.r |only evaluate-0.20/evaluate/tests/testthat/plot-par.r |only evaluate-0.20/evaluate/tests/testthat/plot-par2.r |only evaluate-0.20/evaluate/tests/testthat/plot-persp.r |only evaluate-0.20/evaluate/tests/testthat/plot-strwidth.r |only evaluate-0.20/evaluate/tests/testthat/plot.r |only evaluate-0.20/evaluate/tests/testthat/raw-output.r |only evaluate-0.20/evaluate/tests/testthat/test-errors.r |only evaluate-0.20/evaluate/tests/testthat/test-evaluate.r |only evaluate-0.20/evaluate/tests/testthat/test-graphics.r |only evaluate-0.20/evaluate/tests/testthat/test-output.r |only evaluate-0.20/evaluate/tests/testthat/test-parse.r |only evaluate-0.20/evaluate/tests/testthat/try.r |only evaluate-0.21/evaluate/DESCRIPTION | 15 - evaluate-0.21/evaluate/LICENSE | 4 evaluate-0.21/evaluate/MD5 | 125 ++++++------ evaluate-0.21/evaluate/NEWS.md | 9 evaluate-0.21/evaluate/R/eval.R |only evaluate-0.21/evaluate/R/graphics.R |only evaluate-0.21/evaluate/R/hooks.R |only evaluate-0.21/evaluate/R/output.R |only evaluate-0.21/evaluate/R/parse.R |only evaluate-0.21/evaluate/R/replay.R |only evaluate-0.21/evaluate/R/traceback.R |only evaluate-0.21/evaluate/R/watcher.R |only evaluate-0.21/evaluate/man/create_traceback.Rd | 2 evaluate-0.21/evaluate/man/evaluate.Rd | 7 evaluate-0.21/evaluate/man/flush_console.Rd | 2 evaluate-0.21/evaluate/man/inject_funs.Rd | 2 evaluate-0.21/evaluate/man/is.message.Rd | 2 evaluate-0.21/evaluate/man/line_prompt.Rd | 2 evaluate-0.21/evaluate/man/new_output_handler.Rd | 2 evaluate-0.21/evaluate/man/parse_all.Rd | 2 evaluate-0.21/evaluate/man/remove_hooks.Rd | 2 evaluate-0.21/evaluate/man/replay.Rd | 8 evaluate-0.21/evaluate/man/set_hooks.Rd | 2 evaluate-0.21/evaluate/man/try_capture_stack.Rd | 2 evaluate-0.21/evaluate/man/watchout.Rd | 2 evaluate-0.21/evaluate/tests/testthat/_snaps |only evaluate-0.21/evaluate/tests/testthat/comment.R |only evaluate-0.21/evaluate/tests/testthat/data.R |only evaluate-0.21/evaluate/tests/testthat/error-complex.R |only evaluate-0.21/evaluate/tests/testthat/error.R |only evaluate-0.21/evaluate/tests/testthat/example-1.R |only evaluate-0.21/evaluate/tests/testthat/ggplot-empty-1.R |only evaluate-0.21/evaluate/tests/testthat/ggplot-empty-2.R |only evaluate-0.21/evaluate/tests/testthat/ggplot-loop.R |only evaluate-0.21/evaluate/tests/testthat/ggplot.R |only evaluate-0.21/evaluate/tests/testthat/interleave-1.R |only evaluate-0.21/evaluate/tests/testthat/interleave-2.R |only evaluate-0.21/evaluate/tests/testthat/order.R |only evaluate-0.21/evaluate/tests/testthat/parse.R |only evaluate-0.21/evaluate/tests/testthat/plot-additions.R |only evaluate-0.21/evaluate/tests/testthat/plot-clip.R |only evaluate-0.21/evaluate/tests/testthat/plot-last-comment.R |only evaluate-0.21/evaluate/tests/testthat/plot-loop.R |only evaluate-0.21/evaluate/tests/testthat/plot-multi-layout.R |only evaluate-0.21/evaluate/tests/testthat/plot-multi-layout2.R |only evaluate-0.21/evaluate/tests/testthat/plot-multi-missing.R |only evaluate-0.21/evaluate/tests/testthat/plot-multi.R |only evaluate-0.21/evaluate/tests/testthat/plot-new.R |only evaluate-0.21/evaluate/tests/testthat/plot-par.R |only evaluate-0.21/evaluate/tests/testthat/plot-par2.R |only evaluate-0.21/evaluate/tests/testthat/plot-persp.R |only evaluate-0.21/evaluate/tests/testthat/plot-strwidth.R |only evaluate-0.21/evaluate/tests/testthat/plot.R |only evaluate-0.21/evaluate/tests/testthat/raw-output.R |only evaluate-0.21/evaluate/tests/testthat/test-errors.R |only evaluate-0.21/evaluate/tests/testthat/test-eval.R |only evaluate-0.21/evaluate/tests/testthat/test-evaluate.R |only evaluate-0.21/evaluate/tests/testthat/test-graphics.R |only evaluate-0.21/evaluate/tests/testthat/test-output-handler.R | 2 evaluate-0.21/evaluate/tests/testthat/test-output.R |only evaluate-0.21/evaluate/tests/testthat/test-parse.R |only evaluate-0.21/evaluate/tests/testthat/test-replay.R |only evaluate-0.21/evaluate/tests/testthat/testthat-problems.rds |only evaluate-0.21/evaluate/tests/testthat/try.R |only 108 files changed, 105 insertions(+), 87 deletions(-)
Title: Various R Programming Tools for Data Manipulation
Description: Various R programming tools for data manipulation, including
medical unit conversions, combining objects, character vector operations,
factor manipulation, obtaining information about R objects, manipulating
MS-Excel formatted files, generating fixed-width format files, extracting
components of date & time objects, operations on columns of data frames,
matrix operations, operations on vectors, operations on data frames, value of
last evaluated expression, and a resample() wrapper for sample() that ensures
consistent behavior for both scalar and vector arguments.
Author: Gregory R. Warnes [aut],
Gregor Gorjanc [aut],
Arni Magnusson [aut, cre],
Liviu Andronic [aut],
Jim Rogers [aut],
Don MacQueen [aut],
Ales Korosec [aut],
Ben Bolker [ctb],
Michael Chirico [ctb],
Gabor Grothendieck [ctb],
Thomas Lumley [ctb],
Brian Ri [...truncated...]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between gdata versions 2.18.0.1 dated 2022-05-11 and 2.19.0 dated 2023-05-05
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gdata-2.19.0/gdata/R/mapLevels.R | 2 gdata-2.19.0/gdata/R/matchcols.R | 2 gdata-2.19.0/gdata/R/nobs.R | 2 gdata-2.19.0/gdata/R/read.xls.R | 3 gdata-2.19.0/gdata/R/rename.vars.R | 2 gdata-2.19.0/gdata/R/runPerlScript.R |only gdata-2.19.0/gdata/R/sheetCount.R | 106 ++--- gdata-2.19.0/gdata/R/startsWith.R | 15 gdata-2.19.0/gdata/R/unknown.R | 2 gdata-2.19.0/gdata/R/unmatrix.R | 2 gdata-2.19.0/gdata/R/update.data.frame.R | 84 +--- gdata-2.19.0/gdata/R/wideByFactor.R | 78 +-- gdata-2.19.0/gdata/R/write.fwf.R | 2 gdata-2.19.0/gdata/R/xls2sep.R | 227 +++++------ gdata-2.19.0/gdata/R/xlsFormats.R | 46 -- gdata-2.19.0/gdata/build |only gdata-2.19.0/gdata/data/MedUnits.rda |binary gdata-2.19.0/gdata/inst/doc/mapLevels.Rnw | 2 gdata-2.19.0/gdata/inst/doc/mapLevels.pdf |binary gdata-2.19.0/gdata/inst/doc/unknown.Rnw | 1 gdata-2.19.0/gdata/inst/doc/unknown.pdf |binary gdata-2.19.0/gdata/inst/perl/Archive/Extract.pm |only gdata-2.19.0/gdata/inst/perl/Archive/Tar |only 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gdata-2.19.0/gdata/man/humanReadable.Rd | 5 gdata-2.19.0/gdata/man/installXLSXsupport.Rd | 155 ++++--- gdata-2.19.0/gdata/man/interleave.Rd | 2 gdata-2.19.0/gdata/man/keep.Rd | 20 gdata-2.19.0/gdata/man/left.Rd | 48 ++ gdata-2.19.0/gdata/man/ll.Rd | 17 gdata-2.19.0/gdata/man/nobs.Rd | 2 gdata-2.19.0/gdata/man/read.xls.Rd | 50 +- gdata-2.19.0/gdata/man/rename.vars.Rd | 2 gdata-2.19.0/gdata/man/sheetCount.Rd | 113 +++-- gdata-2.19.0/gdata/man/startsWith.Rd | 16 gdata-2.19.0/gdata/man/trimSum.Rd | 104 ++--- gdata-2.19.0/gdata/man/unknown.Rd | 2 gdata-2.19.0/gdata/man/update.list.Rd | 82 +-- gdata-2.19.0/gdata/man/wideByFactor.Rd | 4 gdata-2.19.0/gdata/man/write.fwf.Rd | 2 gdata-2.19.0/gdata/man/xlsFormats.Rd | 72 ++- gdata-2.19.0/gdata/tests/test.humanReadable.Rout.save | 11 gdata-2.19.0/gdata/tests/test.reorder.factor.Rout.save | 11 gdata-2.19.0/gdata/tests/test.write.fwf.eol.Rout.save |only gdata-2.19.0/gdata/tests/tests.write.fwf.R | 2 gdata-2.19.0/gdata/tests/tests.write.fwf.Rout.save | 13 gdata-2.19.0/gdata/tests/unitTests/Makefile | 3 gdata-2.19.0/gdata/tests/unitTests/runit.cbindX.R | 2 gdata-2.19.0/gdata/tests/unitTests/runit.drop.levels.R | 2 gdata-2.19.0/gdata/tests/unitTests/runit.mapLevels.R | 4 gdata-2.19.0/gdata/tests/unitTests/runit.reorder.factor.R | 2 gdata-2.19.0/gdata/tests/unitTests/runit.trim.R | 2 gdata-2.19.0/gdata/tests/unitTests/runit.unknown.R | 2 gdata-2.19.0/gdata/tests/unitTests/runit.write.fwf.R | 3 gdata-2.19.0/gdata/vignettes/mapLevels.Rnw | 2 gdata-2.19.0/gdata/vignettes/unknown.Rnw | 1 124 files changed, 1383 insertions(+), 1103 deletions(-)
Title: Interface to 'ChatGPT' from R
Description: 'OpenAI's 'ChatGPT' <https://chat.openai.com/> coding assistant for 'RStudio'. A set
of functions and 'RStudio' addins that aim to help the R developer in tedious coding tasks.
Author: Juan Cruz Rodriguez [aut, cre]
Maintainer: Juan Cruz Rodriguez <jcrodriguez@unc.edu.ar>
Diff between chatgpt versions 0.2.2 dated 2023-03-22 and 0.2.3 dated 2023-05-05
DESCRIPTION | 6 +-- MD5 | 24 ++++++++------ NAMESPACE | 3 + R/addins.R | 13 +++++--- R/ask_chatgpt.R | 15 ++++++++- R/chatgpt-package.R |only R/create_unit_tests.R | 2 - R/gpt_get_completions.R | 73 ++++++++++++++++++++++++++++++--------------- R/parse_response.R | 15 +++------ R/reset_chat_session.R |only man/ask_chatgpt.Rd | 2 - man/chatgpt-package.Rd |only man/gpt_get_completions.Rd | 8 ++++ man/parse_response.Rd | 5 +-- man/reset_chat_session.Rd |only 15 files changed, 110 insertions(+), 56 deletions(-)
Title: Text Analysis Through the 'Receptiviti' API
Description: Send text to the <https://www.receptiviti.com> API to be scored
by all available frameworks.
Author: Receptiviti Inc. [fnd, cph],
Kent English [cre],
Micah Iserman [aut, ctr]
Maintainer: Kent English <kenglish@receptiviti.com>
Diff between receptiviti versions 0.1.3 dated 2022-12-13 and 0.1.4 dated 2023-05-05
DESCRIPTION | 6 MD5 | 16 NEWS.md | 13 R/receptiviti.R | 775 ++++++++++++++++--------------- R/receptiviti_status.R | 6 README.md | 4 man/receptiviti.Rd | 37 - tests/testthat/test-receptiviti.R | 40 + tests/testthat/test-receptiviti_status.R | 1 9 files changed, 500 insertions(+), 398 deletions(-)
Title: Maps, Data and Methods Related to Guerry (1833) "Moral
Statistics of France"
Description: Maps of France in 1830, multivariate datasets from A.-M. Guerry and others, and statistical and
graphic methods related to Guerry's "Moral Statistics of France". The goal is to facilitate the exploration and
development of statistical and graphic methods for multivariate data in a geospatial context of historical interest.
Author: Michael Friendly [aut, cre] ,
Stephane Dray [aut] ,
Roger Bivand [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between Guerry versions 1.8.0 dated 2022-10-08 and 1.8.1 dated 2023-05-05
DESCRIPTION | 14 +-- MD5 | 28 +++--- NEWS | 6 + build/partial.rdb |binary build/vignette.rds |binary demo |only inst/doc/MultiSpat.html | 169 ++++++++++++++++++------------------- inst/doc/guerry-multivariate.html | 153 ++++++++++++++++----------------- man/Guerry-package.Rd | 10 +- man/Guerry.Rd | 23 ++--- man/figures/README-ex-bivar2-1.png |binary man/gfrance.Rd | 4 vignettes/reference.bib | 30 +++--- 13 files changed, 226 insertions(+), 211 deletions(-)
Title: Extract Demographic and Competition Data from Fine-Scale Maps
Description: Extracts growth, survival, and local neighborhood density
information from repeated, fine-scale maps of organism occurrence. Further
information about this package can be found in our journal article,
"plantTracker: An R package to translate maps of plant occurrence into
demographic data" published in 2022 in Methods in Ecology and Evolution
(Stears, et al., 2022) <doi:10.1111/2041-210X.13950>.
Author: Alice Stears [aut, cre] ,
Jared Studyvin [aut],
David Atkins [aut]
Maintainer: Alice Stears <alice.e.stears@gmail.com>
Diff between plantTracker versions 1.0.1 dated 2023-01-11 and 1.1.0 dated 2023-05-05
DESCRIPTION | 8 MD5 | 65 +- R/aggregateByGenet.R | 2 R/assign.R | 24 R/checkDat.R | 17 R/drawQuadMap.R | 19 R/getBasalAreas.R | 29 R/getLambda.R | 32 R/getNeighbors.R | 19 R/getRecruits.R | 21 R/trackSpp.R | 22 README.md | 834 ++++++++++++++------------ build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 25 inst/doc/Suggested_plantTracker_Workflow.html | 5 inst/figures |only man/aggregateByGenet.Rd | 2 man/assign.Rd | 22 man/checkDat.Rd | 19 man/drawQuadMap.Rd | 21 man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-14-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-19-1.png |binary man/figures/README-unnamed-chunk-20-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/logo.png |only man/getBasalAreas.Rd | 24 man/getLambda.Rd | 28 man/getNeighbors.Rd | 21 man/getRecruits.Rd | 23 man/trackSpp.Rd | 24 34 files changed, 753 insertions(+), 553 deletions(-)
Title: Standardized Comparison of Workflows in Mass Spectrometry-Based
Bottom-Up Proteomics
Description: Useful functions to analyze proteomic workflows including
number of identifications, data completeness, missed cleavages,
quantitative and retention time precision etc. Various software
outputs are supported such as 'ProteomeDiscoverer', 'Spectronaut',
'DIA-NN' and 'MaxQuant'.
Author: Oliver Kardell [aut, cre]
Maintainer: Oliver Kardell <Okdll@gmx.net>
Diff between mpwR versions 0.1.3 dated 2023-03-16 and 0.1.4 dated 2023-05-05
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++++------------ NAMESPACE | 2 ++ NEWS.md | 7 +++++++ R/get_ID_Report.R | 2 +- R/load_experimental_design.R |only R/prepare_mpwR.R | 4 ++-- R/utils_import.R | 9 ++++++++- R/write_experimental_design.R |only R/write_generic_template.R | 19 ++++++++++++++++--- build/vignette.rds |binary inst/doc/Workflow.html | 30 +++++++++++++++--------------- man/load_experimental_design.Rd |only man/prepare_mpwR.Rd | 4 ++-- man/write_experimental_design.Rd |only man/write_generic_template.Rd | 19 ++++++++++++++++--- tests/testthat/test_utils_import.R | 12 +++++++----- 17 files changed, 97 insertions(+), 49 deletions(-)
Title: Meta-Analysis of Generalized Additive Models
Description: Meta-analysis of generalized additive
models and generalized additive mixed models. A typical use case is
when data cannot be shared across locations, and an overall meta-analytic
fit is sought. 'metagam' provides functionality for removing individual
participant data from models computed using the 'mgcv' and 'gamm4' packages such
that the model objects can be shared without exposing individual data.
Furthermore, methods for meta-analysing these fits are provided. The implemented
methods are described in Sorensen et al. (2020), <doi:10.1016/j.neuroimage.2020.117416>,
extending previous works by Schwartz and Zanobetti (2000)
and Crippa et al. (2018) <doi:10.6000/1929-6029.2018.07.02.1>.
Author: Oystein Sorensen [aut, cre] ,
Andreas M. Brandmaier [aut] ,
Athanasia Mo Mowinckel [aut]
Maintainer: Oystein Sorensen <oystein.sorensen@psykologi.uio.no>
Diff between metagam versions 0.3.1 dated 2021-11-14 and 0.4.0 dated 2023-05-05
DESCRIPTION | 8 MD5 | 90 +++-- NAMESPACE | 18 - R/metagam.R | 262 +++++------------ R/metagam_package.R | 27 - R/misc.R | 191 ++++++++++-- R/plot_between_study_sd.R |only R/plot_dominance.R | 74 +--- R/plot_heterogeneity.R | 84 ++--- R/plot_metagam.R | 147 +++++++-- R/print_metagam.R | 13 README.md | 3 build/vignette.rds |binary inst/CITATION | 39 +- inst/doc/dominance.R | 11 inst/doc/dominance.Rmd | 17 - inst/doc/dominance.html | 369 +++++++++++++++++++----- inst/doc/heterogeneity.R | 6 inst/doc/heterogeneity.Rmd | 11 inst/doc/heterogeneity.html | 391 ++++++++++++++++++++------ inst/doc/introduction.R | 6 inst/doc/introduction.Rmd | 9 inst/doc/introduction.html | 438 +++++++++++++++++++++++------ inst/doc/multivariate.Rmd | 4 inst/doc/multivariate.html | 393 ++++++++++++++++++++------ inst/doc/pvals.R | 73 ++-- inst/doc/pvals.Rmd | 82 ++--- inst/doc/pvals.html | 541 ++++++++++++++++++++++++++---------- inst/examples/metagam_examples.R | 11 man/getmasd.Rd | 8 man/make_heterogeneity_data.Rd | 8 man/metagam-package.Rd | 27 - man/metagam.Rd | 109 +++---- man/plot.metagam.Rd | 39 +- man/plot_between_study_sd.Rd |only man/plot_dominance.Rd | 22 - man/plot_heterogeneity.Rd | 12 man/plot_heterogeneity_p.Rd | 6 man/plot_heterogeneity_q.Rd | 6 man/strip_rawdata.Rd | 21 - tests/testthat/test-metagam.R | 159 +++++++++- vignettes/dominance.Rmd | 17 - vignettes/figures/quantile_plot.png |binary vignettes/heterogeneity.Rmd | 11 vignettes/introduction.Rmd | 9 vignettes/multivariate.Rmd | 4 vignettes/pvals.Rmd | 82 ++--- 47 files changed, 2650 insertions(+), 1208 deletions(-)
Title: Event Prediction
Description: Predicts enrollment and events at the design stage using assumed enrollment and treatment-specific time-to-event models, or at the analysis stage using blinded data and specified enrollment and time-to-event models through simulations.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between eventPred versions 0.1.1 dated 2023-04-19 and 0.1.2 dated 2023-05-05
DESCRIPTION | 10 MD5 | 36 +-- NAMESPACE | 1 NEWS.md | 9 R/eventPred-package.R | 2 R/fitDropout.R | 31 +-- R/fitEnrollment.R | 16 + R/fitEvent.R | 33 +-- R/getPrediction.R | 474 ++++++++++++++++++++++++----------------------- R/predictEnrollment.R | 30 ++ R/predictEvent.R | 269 +++++++++++++------------- R/summarizeObserved.R | 32 +-- data/interimData1.rda |binary man/fitEvent.Rd | 2 man/getPrediction.Rd | 60 ++--- man/interimData1.Rd | 2 man/predictEnrollment.Rd | 6 man/predictEvent.Rd | 6 man/summarizeObserved.Rd | 4 19 files changed, 545 insertions(+), 478 deletions(-)
Title: Common Public Health Statistics and their Confidence Intervals
Description: Functions to calculate commonly used public health statistics and
their confidence intervals using methods approved for use in the production
of Public Health England indicators such as those presented via Fingertips
(<http://fingertips.phe.org.uk/>). It provides functions for the generation
of proportions, crude rates, means, directly standardised rates, indirectly
standardised rates, standardised mortality ratios, slope and relative index
of inequality and life expectancy.
Statistical methods are referenced in the following publications.
Breslow NE, Day NE (1987) <doi:10.1002/sim.4780080614>.
Dobson et al (1991) <doi:10.1002/sim.4780100317>.
Armitage P, Berry G (2002) <doi:10.1002/9780470773666>.
Wilson EB. (1927) <doi:10.1080/01621459.1927.10502953>.
Altman DG et al (2000, ISBN: 978-0-727-91375-3).
Chiang CL. (1968, ISBN: 978-0-882-75200-6).
Newell C. (1994, ISBN: 978-0-898-62451-9).
Eayres DP, Williams ES (2004) <doi:10.1136/jech.2003.009654>.
Si [...truncated...]
Author: Anderson Georgina [aut, cre],
Fox Sebastian [ctb],
Francis Matthew [ctb],
Fryers Paul [ctb],
Clegg Emma [ctb],
Westermann Annabel [ctb],
Woolner Joshua [ctb]
Maintainer: Anderson Georgina <georgina.anderson@dhsc.gov.uk>
Diff between PHEindicatormethods versions 2.0.0 dated 2023-03-06 and 2.0.1 dated 2023-05-05
DESCRIPTION | 26 - MD5 | 28 - NEWS.md | 4 R/ISRate.R | 128 ++++-- R/ISRatio.R | 322 +++++++++------ R/sysdata.rda |binary README.md | 11 inst/doc/DSR-vignette.html | 108 ++--- inst/doc/Introduction_to_PHEindicatormethods.html | 443 ++++++++++------------ inst/doc/WorkedExamples_phe_sii.html | 196 ++++----- man/calculate_ISRate.Rd | 24 + man/calculate_ISRatio.Rd | 23 + tests/testthat/testISRates.R | 9 tests/testthat/testISRatios.R | 14 tests/testthat/testdata_DSR_ISR.xlsx |binary 15 files changed, 765 insertions(+), 571 deletions(-)
More information about PHEindicatormethods at CRAN
Permanent link
Title: Machine Learning in R - Next Generation
Description: Efficient, object-oriented programming on the
building blocks of machine learning. Provides 'R6' objects for tasks,
learners, resamplings, and measures. The package is geared towards
scalability and larger datasets by supporting parallelization and
out-of-memory data-backends like databases. While 'mlr3' focuses on
the core computational operations, add-on packages provide additional
functionality.
Author: Michel Lang [cre, aut] ,
Bernd Bischl [aut] ,
Jakob Richter [aut] ,
Patrick Schratz [aut] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [aut],
Florian Pfisterer [aut] ,
Raphael Sonabend [aut] ,
Lennart Schneider [c [...truncated...]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3 versions 0.15.0 dated 2023-03-17 and 0.16.0 dated 2023-05-05
DESCRIPTION | 13 +- MD5 | 40 ++++--- NAMESPACE | 2 NEWS.md | 10 + R/LearnerClassifDebug.R | 1 R/LearnerClassifFeatureless.R | 40 ++++--- R/as_resample_result.R | 24 ++++ R/as_result_data.R | 24 +++- R/benchmark_grid.R | 86 +++++++++++++---- R/mlr_test_helpers.R |only R/worker.R | 2 build/partial.rdb |binary inst/testthat/helper_expectations.R | 7 - man/as_resample_result.Rd | 24 ++++ man/benchmark_grid.Rd | 27 ++++- man/mlr_learners_classif.debug.Rd | 1 man/mlr_learners_classif.featureless.Rd | 15 ++ man/mlr_test_helpers.Rd |only tests/testthat/test_benchmark.R | 56 +++++++++++ tests/testthat/test_errorhandling.R | 4 tests/testthat/test_mlr_learners_classif_featureless.R | 13 +- tests/testthat/test_resample.R | 13 ++ 22 files changed, 324 insertions(+), 78 deletions(-)
Title: Version-Control for CRAN, GitHub, and GitLab Packages
Description: Make R scripts reproducible, by ensuring that
every time a given script is run, the same version of the used packages are
loaded (instead of whichever version the user running the script happens to
have installed). This is achieved by using the command
groundhog.library() instead of the base command library(), and including a
date in the call. The date is used to call on the same version of the
package every time (the most recent version available at that date).
Load packages from CRAN, GitHub, or Gitlab.
Author: Uri Simonsohn [aut, cre] ,
Hugo Gruson [ctb, aut]
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between groundhog versions 3.0.0 dated 2023-04-20 and 3.1.0 dated 2023-05-05
groundhog-3.0.0/groundhog/inst |only groundhog-3.1.0/groundhog/DESCRIPTION | 6 groundhog-3.1.0/groundhog/MD5 | 48 - groundhog-3.1.0/groundhog/R/check.snowball.conflict.R | 4 groundhog-3.1.0/groundhog/R/estimate.seconds.left.R | 6 groundhog-3.1.0/groundhog/R/file.rename.robust.R | 2 groundhog-3.1.0/groundhog/R/file.rename.robust2.R | 161 ++++-- groundhog-3.1.0/groundhog/R/get.groundhog.folder.R | 79 +-- groundhog-3.1.0/groundhog/R/get.snowball.R | 8 groundhog-3.1.0/groundhog/R/groundhog.library.R | 156 +++--- groundhog-3.1.0/groundhog/R/install.one.R | 22 groundhog-3.1.0/groundhog/R/install.source.R | 143 ++--- groundhog-3.1.0/groundhog/R/interlibrary.functions.R | 38 - groundhog-3.1.0/groundhog/R/load.cran.toc.R | 208 ++------ groundhog-3.1.0/groundhog/R/localize.R | 87 ++- groundhog-3.1.0/groundhog/R/message.batch.installation.feedback.R | 106 +++- groundhog-3.1.0/groundhog/R/remote_functions.R | 38 - groundhog-3.1.0/groundhog/R/restore.library.R | 61 +- groundhog-3.1.0/groundhog/R/try.renaming.method.again.R | 28 - groundhog-3.1.0/groundhog/R/utils.R | 244 +++++++++- groundhog-3.1.0/groundhog/R/zzz.R | 52 +- groundhog-3.1.0/groundhog/README.md | 6 groundhog-3.1.0/groundhog/man/groundhog.library.Rd | 19 groundhog-3.1.0/groundhog/man/try.renaming.method.again.Rd | 25 - 24 files changed, 923 insertions(+), 624 deletions(-)
Title: Clustering and Classification with the Contaminated Normal
Description: Fits mixtures of multivariate contaminated normal distributions
(with eigen-decomposed scale matrices) via the expectation conditional-
maximization algorithm under a clustering or classification paradigm
Methods are described in Antonio Punzo, Angelo Mazza, and Paul D McNicholas (2018) <doi:10.18637/jss.v085.i10>.
Author: Antonio Punzo, Angelo Mazza, Paul D. McNicholas
Maintainer: Angelo Mazza <a.mazza@unict.it>
Diff between ContaminatedMixt versions 1.3.7 dated 2022-05-10 and 1.3.8 dated 2023-05-05
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/brentmin.c | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
More information about ContaminatedMixt at CRAN
Permanent link
Title: Simplified Fetching and Processing of Microarray and RNA-Seq
Data
Description: Wrapper around various existing tools and command-line interfaces,
providing a standard interface, simple parallelization, and detailed logging.
For microarray data, maps probe sets to standard gene IDs, building on
'GEOquery' Davis and Meltzer (2007) <doi:10.1093/bioinformatics/btm254>,
'ArrayExpress' Kauffmann et al. (2009) <doi:10.1093/bioinformatics/btp354>,
Robust multi-array average 'RMA' Irizarry et al. (2003) <doi:10.1093/biostatistics/4.2.249>,
and 'BrainArray' Dai et al. (2005) <doi:10.1093/nar/gni179>.
For RNA-seq data, fetches metadata and raw reads from National Center for Biotechnology
Information (NCBI) Sequence Read Archive (SRA), performs standard adapter and
quality trimming using 'TrimGalore' Krueger <https://github.com/FelixKrueger/TrimGalore>,
performs quality control checks using 'FastQC' Andrews <https://github.com/s-andrews/FastQC>,
quantifies transcript abundances using 'salmon' Patro et al. (2017) <doi:10.1038/nmeth.4197& [...truncated...]
Author: Jake Hughey [aut, cre],
Josh Schoenbachler [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>
Diff between seeker versions 1.1.0 dated 2023-03-22 and 1.1.1 dated 2023-05-05
DESCRIPTION | 6 - MD5 | 14 ++-- R/fetch.R | 82 ------------------------- inst/doc/introduction.html | 4 - inst/doc/reproducibility.html | 4 - tests/testthat/data/fetch_metadata_output.qs |binary tests/testthat/data/fetch_metadata_output_2.qs |binary tests/testthat/test-fetch.R | 24 ++++--- 8 files changed, 29 insertions(+), 105 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut, cre],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Javier Luraschi [ctb],
Karl Dunkle Werner [ctb] ,
Jeffrey Wong [ctb [...truncated...]
Maintainer: Nic Crane <thisisnic@gmail.com>
Diff between arrow versions 11.0.0.3 dated 2023-03-08 and 12.0.0 dated 2023-05-05
arrow-11.0.0.3/arrow/tools/cpp/build-support/google-cloud-cpp-curl-static-windows.patch |only arrow-11.0.0.3/arrow/tools/cpp/src/arrow/compute/exec |only arrow-11.0.0.3/arrow/tools/cpp/src/arrow/compute/kernels/aggregate_benchmark.cc |only arrow-11.0.0.3/arrow/tools/cpp/src/arrow/compute/kernels/common.h |only arrow-11.0.0.3/arrow/tools/cpp/src/arrow/compute/kernels/row_encoder.h |only arrow-11.0.0.3/arrow/tools/cpp/src/arrow/dataset/test_util.h |only arrow-11.0.0.3/arrow/tools/cpp/src/parquet/murmur3.cc |only arrow-11.0.0.3/arrow/tools/cpp/src/parquet/murmur3.h |only arrow-12.0.0/arrow/DESCRIPTION | 6 arrow-12.0.0/arrow/MD5 | 1038 ++++--- arrow-12.0.0/arrow/NAMESPACE | 5 arrow-12.0.0/arrow/NEWS.md | 284 +- arrow-12.0.0/arrow/R/arrow-info.R | 9 arrow-12.0.0/arrow/R/arrow-object.R | 2 arrow-12.0.0/arrow/R/arrow-package.R | 14 arrow-12.0.0/arrow/R/arrowExports.R | 36 arrow-12.0.0/arrow/R/csv.R | 49 arrow-12.0.0/arrow/R/dataset-factory.R | 2 arrow-12.0.0/arrow/R/dataset-format.R | 4 arrow-12.0.0/arrow/R/dataset-write.R | 1 arrow-12.0.0/arrow/R/dataset.R | 2 arrow-12.0.0/arrow/R/dplyr-collect.R | 16 arrow-12.0.0/arrow/R/dplyr-funcs-datetime.R | 4 arrow-12.0.0/arrow/R/dplyr-funcs-doc.R | 4 arrow-12.0.0/arrow/R/dplyr-funcs.R | 2 arrow-12.0.0/arrow/R/dplyr-join.R | 6 arrow-12.0.0/arrow/R/dplyr-mutate.R | 2 arrow-12.0.0/arrow/R/dplyr-select.R | 2 arrow-12.0.0/arrow/R/dplyr-summarize.R | 107 arrow-12.0.0/arrow/R/dplyr.R | 35 arrow-12.0.0/arrow/R/duckdb.R | 3 arrow-12.0.0/arrow/R/enums.R | 4 arrow-12.0.0/arrow/R/expression.R | 55 arrow-12.0.0/arrow/R/filesystem.R | 71 arrow-12.0.0/arrow/R/io.R | 12 arrow-12.0.0/arrow/R/ipc-stream.R | 2 arrow-12.0.0/arrow/R/json.R | 12 arrow-12.0.0/arrow/R/parquet.R | 1 arrow-12.0.0/arrow/R/query-engine.R | 187 - arrow-12.0.0/arrow/R/record-batch-reader.R | 1 arrow-12.0.0/arrow/R/table.R | 1 arrow-12.0.0/arrow/R/type.R | 5 arrow-12.0.0/arrow/R/util.R | 13 arrow-12.0.0/arrow/configure | 10 arrow-12.0.0/arrow/configure.win | 11 arrow-12.0.0/arrow/inst/build_arrow_static.sh | 1 arrow-12.0.0/arrow/man/CsvReadOptions.Rd | 10 arrow-12.0.0/arrow/man/FileFormat.Rd | 2 arrow-12.0.0/arrow/man/FileSystem.Rd | 9 arrow-12.0.0/arrow/man/FragmentScanOptions.Rd | 2 arrow-12.0.0/arrow/man/acero.Rd | 4 arrow-12.0.0/arrow/man/arrow_info.Rd | 3 arrow-12.0.0/arrow/man/data-type.Rd | 2 arrow-12.0.0/arrow/man/dataset_factory.Rd | 2 arrow-12.0.0/arrow/man/enums.Rd | 2 arrow-12.0.0/arrow/man/make_readable_file.Rd | 4 arrow-12.0.0/arrow/man/open_delim_dataset.Rd | 2 arrow-12.0.0/arrow/man/read_delim_arrow.Rd | 13 arrow-12.0.0/arrow/man/read_json_arrow.Rd | 13 arrow-12.0.0/arrow/man/register_binding.Rd | 2 arrow-12.0.0/arrow/src/altrep.cpp | 8 arrow-12.0.0/arrow/src/array.cpp | 1 arrow-12.0.0/arrow/src/array_to_vector.cpp | 4 arrow-12.0.0/arrow/src/arrowExports.cpp | 302 +- arrow-12.0.0/arrow/src/arrow_types.h | 18 arrow-12.0.0/arrow/src/compute-exec.cpp | 255 - arrow-12.0.0/arrow/src/compute.cpp | 14 arrow-12.0.0/arrow/src/csv.cpp | 1 arrow-12.0.0/arrow/src/expression.cpp | 38 arrow-12.0.0/arrow/src/filesystem.cpp | 68 arrow-12.0.0/arrow/src/memorypool.cpp | 6 arrow-12.0.0/arrow/src/r_to_arrow.cpp | 2 arrow-12.0.0/arrow/src/scalar.cpp | 2 arrow-12.0.0/arrow/src/table.cpp | 3 arrow-12.0.0/arrow/src/type_infer.cpp | 2 arrow-12.0.0/arrow/tests/testthat/test-Table.R | 25 arrow-12.0.0/arrow/tests/testthat/test-altrep.R | 21 arrow-12.0.0/arrow/tests/testthat/test-compute-sort.R | 17 arrow-12.0.0/arrow/tests/testthat/test-csv.R | 37 arrow-12.0.0/arrow/tests/testthat/test-dataset-dplyr.R | 14 arrow-12.0.0/arrow/tests/testthat/test-dataset-write.R | 6 arrow-12.0.0/arrow/tests/testthat/test-dplyr-arrange.R | 2 arrow-12.0.0/arrow/tests/testthat/test-dplyr-collapse.R | 7 arrow-12.0.0/arrow/tests/testthat/test-dplyr-count.R | 2 arrow-12.0.0/arrow/tests/testthat/test-dplyr-distinct.R | 2 arrow-12.0.0/arrow/tests/testthat/test-dplyr-filter.R | 2 arrow-12.0.0/arrow/tests/testthat/test-dplyr-funcs-conditional.R | 38 arrow-12.0.0/arrow/tests/testthat/test-dplyr-funcs-datetime.R | 2 arrow-12.0.0/arrow/tests/testthat/test-dplyr-funcs-math.R | 1 arrow-12.0.0/arrow/tests/testthat/test-dplyr-funcs-string.R | 1 arrow-12.0.0/arrow/tests/testthat/test-dplyr-funcs-type.R | 1 arrow-12.0.0/arrow/tests/testthat/test-dplyr-group-by.R | 2 arrow-12.0.0/arrow/tests/testthat/test-dplyr-join.R | 2 arrow-12.0.0/arrow/tests/testthat/test-dplyr-mutate.R | 2 arrow-12.0.0/arrow/tests/testthat/test-dplyr-query.R | 204 - arrow-12.0.0/arrow/tests/testthat/test-dplyr-select.R | 2 arrow-12.0.0/arrow/tests/testthat/test-dplyr-slice.R | 2 arrow-12.0.0/arrow/tests/testthat/test-dplyr-summarize.R | 44 arrow-12.0.0/arrow/tests/testthat/test-dplyr-union.R | 2 arrow-12.0.0/arrow/tests/testthat/test-duckdb.R | 2 arrow-12.0.0/arrow/tests/testthat/test-expression.R | 26 arrow-12.0.0/arrow/tests/testthat/test-feather.R | 9 arrow-12.0.0/arrow/tests/testthat/test-gcs.R | 74 arrow-12.0.0/arrow/tests/testthat/test-json.R | 9 arrow-12.0.0/arrow/tests/testthat/test-parquet.R | 12 arrow-12.0.0/arrow/tests/testthat/test-query-engine.R | 2 arrow-12.0.0/arrow/tests/testthat/test-record-batch-reader.R | 6 arrow-12.0.0/arrow/tests/testthat/test-s3-minio.R | 18 arrow-12.0.0/arrow/tests/testthat/test-type.R | 4 arrow-12.0.0/arrow/tests/testthat/test-udf.R | 3 arrow-12.0.0/arrow/tools/LICENSE.txt | 71 arrow-12.0.0/arrow/tools/autobrew | 4 arrow-12.0.0/arrow/tools/cpp/CMakeLists.txt | 22 arrow-12.0.0/arrow/tools/cpp/CMakePresets.json | 152 - arrow-12.0.0/arrow/tools/cpp/build-support/__pycache__/lintutils.cpython-310.pyc |only arrow-12.0.0/arrow/tools/cpp/build-support/update-flatbuffers.sh | 8 arrow-12.0.0/arrow/tools/cpp/cmake_modules/BuildUtils.cmake | 4 arrow-12.0.0/arrow/tools/cpp/cmake_modules/DefineOptions.cmake | 30 arrow-12.0.0/arrow/tools/cpp/cmake_modules/FindGTestAlt.cmake |only arrow-12.0.0/arrow/tools/cpp/cmake_modules/FindLLVMAlt.cmake | 15 arrow-12.0.0/arrow/tools/cpp/cmake_modules/Findre2Alt.cmake | 2 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arrow-12.0.0/arrow/tools/cpp/src/arrow/util/tracing_internal.h | 75 arrow-12.0.0/arrow/tools/cpp/src/arrow/util/type_fwd.h | 5 arrow-12.0.0/arrow/tools/cpp/src/arrow/util/ubsan.h | 21 arrow-12.0.0/arrow/tools/cpp/src/arrow/util/union_util.cc |only arrow-12.0.0/arrow/tools/cpp/src/arrow/util/union_util.h |only arrow-12.0.0/arrow/tools/cpp/src/arrow/util/utf8.cc | 6 arrow-12.0.0/arrow/tools/cpp/src/arrow/util/utf8.h | 4 arrow-12.0.0/arrow/tools/cpp/src/arrow/util/utf8_internal.h | 4 arrow-12.0.0/arrow/tools/cpp/src/arrow/vendored/xxhash/xxhash.h | 2 arrow-12.0.0/arrow/tools/cpp/src/arrow/visit_data_inline.h | 63 arrow-12.0.0/arrow/tools/cpp/src/arrow/visitor.cc | 3 arrow-12.0.0/arrow/tools/cpp/src/arrow/visitor.h | 3 arrow-12.0.0/arrow/tools/cpp/src/arrow/visitor_generate.h | 1 arrow-12.0.0/arrow/tools/cpp/src/generated/parquet_types.cpp | 520 +++ arrow-12.0.0/arrow/tools/cpp/src/generated/parquet_types.h | 1351 ++++++++-- arrow-12.0.0/arrow/tools/cpp/src/parquet/CMakeLists.txt | 24 arrow-12.0.0/arrow/tools/cpp/src/parquet/arrow/path_internal.cc | 7 arrow-12.0.0/arrow/tools/cpp/src/parquet/arrow/reader.cc | 22 arrow-12.0.0/arrow/tools/cpp/src/parquet/arrow/schema.cc | 46 arrow-12.0.0/arrow/tools/cpp/src/parquet/arrow/writer.cc | 39 arrow-12.0.0/arrow/tools/cpp/src/parquet/arrow/writer.h | 5 arrow-12.0.0/arrow/tools/cpp/src/parquet/bloom_filter.cc | 144 - arrow-12.0.0/arrow/tools/cpp/src/parquet/bloom_filter.h | 47 arrow-12.0.0/arrow/tools/cpp/src/parquet/bloom_filter_reader.cc |only arrow-12.0.0/arrow/tools/cpp/src/parquet/bloom_filter_reader.h |only arrow-12.0.0/arrow/tools/cpp/src/parquet/column_page.h | 23 arrow-12.0.0/arrow/tools/cpp/src/parquet/column_reader.cc | 279 +- arrow-12.0.0/arrow/tools/cpp/src/parquet/column_reader.h | 40 arrow-12.0.0/arrow/tools/cpp/src/parquet/column_reader_benchmark.cc | 112 arrow-12.0.0/arrow/tools/cpp/src/parquet/column_writer.cc | 379 ++ arrow-12.0.0/arrow/tools/cpp/src/parquet/column_writer.h | 29 arrow-12.0.0/arrow/tools/cpp/src/parquet/encoding.cc | 521 +++ arrow-12.0.0/arrow/tools/cpp/src/parquet/encoding.h | 15 arrow-12.0.0/arrow/tools/cpp/src/parquet/encoding_benchmark.cc | 278 +- arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/crypto_factory.cc | 38 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/crypto_factory.h | 25 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/file_key_material_store.h | 42 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/file_key_unwrapper.cc | 44 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/file_key_unwrapper.h | 26 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/file_key_wrapper.cc | 29 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/file_key_wrapper.h | 10 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/file_system_key_material_store.cc |only arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/file_system_key_material_store.h |only arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/key_toolkit.cc | 71 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/key_toolkit.h | 32 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/key_toolkit_internal.h | 15 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/test_encryption_util.h | 11 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/test_in_memory_kms.cc | 32 arrow-12.0.0/arrow/tools/cpp/src/parquet/encryption/test_in_memory_kms.h | 9 arrow-12.0.0/arrow/tools/cpp/src/parquet/file_reader.cc | 61 arrow-12.0.0/arrow/tools/cpp/src/parquet/file_reader.h | 22 arrow-12.0.0/arrow/tools/cpp/src/parquet/file_writer.cc | 119 arrow-12.0.0/arrow/tools/cpp/src/parquet/file_writer.h | 21 arrow-12.0.0/arrow/tools/cpp/src/parquet/level_conversion.h | 7 arrow-12.0.0/arrow/tools/cpp/src/parquet/metadata.cc | 73 arrow-12.0.0/arrow/tools/cpp/src/parquet/metadata.h | 30 arrow-12.0.0/arrow/tools/cpp/src/parquet/page_index.cc | 689 +++++ arrow-12.0.0/arrow/tools/cpp/src/parquet/page_index.h | 243 + arrow-12.0.0/arrow/tools/cpp/src/parquet/parquet.thrift | 118 arrow-12.0.0/arrow/tools/cpp/src/parquet/properties.cc | 5 arrow-12.0.0/arrow/tools/cpp/src/parquet/properties.h | 158 - arrow-12.0.0/arrow/tools/cpp/src/parquet/schema.h | 8 arrow-12.0.0/arrow/tools/cpp/src/parquet/statistics.cc | 25 arrow-12.0.0/arrow/tools/cpp/src/parquet/statistics.h | 6 arrow-12.0.0/arrow/tools/cpp/src/parquet/stream_reader.cc | 42 arrow-12.0.0/arrow/tools/cpp/src/parquet/stream_reader.h | 4 arrow-12.0.0/arrow/tools/cpp/src/parquet/stream_writer.cc | 1 arrow-12.0.0/arrow/tools/cpp/src/parquet/test_util.h | 34 arrow-12.0.0/arrow/tools/cpp/src/parquet/thrift_internal.h | 12 arrow-12.0.0/arrow/tools/cpp/src/parquet/xxhasher.cc |only arrow-12.0.0/arrow/tools/cpp/src/parquet/xxhasher.h |only arrow-12.0.0/arrow/tools/cpp/thirdparty/versions.txt | 75 arrow-12.0.0/arrow/tools/cpp/tools/parquet/parquet_scan.cc | 2 arrow-12.0.0/arrow/tools/cpp/vcpkg.json | 2 arrow-12.0.0/arrow/tools/dotenv | 2 arrow-12.0.0/arrow/tools/nixlibs.R | 48 arrow-12.0.0/arrow/tools/test-nixlibs.R | 34 470 files changed, 14522 insertions(+), 4939 deletions(-)
Title: Interface to Data from the SAFE Project
Description: The SAFE Project (<https://www.safeproject.net/>) is a large
scale ecological experiment in Malaysian Borneo that explores the impact
of habitat fragmentation and conversion on ecosystem function and services.
Data collected at the SAFE Project is made available under a common format
through the Zenodo data repository and this package makes it easy to
discover and load that data into R.
Author: Andy Aldersley [aut],
David Orme [aut, cre]
Maintainer: David Orme <d.orme@imperial.ac.uk>
Diff between safedata versions 1.1.2 dated 2022-08-11 and 1.1.3 dated 2023-05-05
DESCRIPTION | 8 +- MD5 | 24 +++---- NEWS | 4 + R/safedata_network.R | 65 +++++++++++---------- R/sysdata.rda |binary README.md | 2 build/vignette.rds |binary inst/doc/overview.html | 5 - inst/doc/using_safe_data.html | 44 +++++--------- inst/safedata_example_dir/safedata_example_dir.zip |binary man/safedata_env.Rd | 4 - man/try_to_download.Rd | 9 +- tests/testthat/test-safedata_network.R | 61 +++++++++++++------ 13 files changed, 124 insertions(+), 102 deletions(-)
Title: Public Economic Data and Quantitative Analysis
Description: Provides an interface to access public economic and financial data for
economic research and quantitative analysis. The data sources including
NBS, FRED, Sina, Eastmoney and etc. It also provides quantitative
functions for trading strategies based on the 'data.table', 'TTR',
'PerformanceAnalytics' and etc packages.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between pedquant versions 0.2.2 dated 2023-05-04 and 0.2.2.1 dated 2023-05-05
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/func_helper.R | 2 +- R/md_stock1_real.R | 4 +++- R/md_stock_symbol.R | 2 +- R/md_stocka_real.R | 4 ++-- 7 files changed, 20 insertions(+), 14 deletions(-)
Title: Asking GPT About R Stuff
Description: A chat package connecting to API endpoints by 'OpenAI'
(<https://platform.openai.com/>) to answer questions (about R).
Author: Johannes Gruber [aut, cre]
Maintainer: Johannes Gruber <johannesb.gruber@gmail.com>
Diff between askgpt versions 0.0.2 dated 2023-03-31 and 0.1.1 dated 2023-05-05
askgpt-0.0.2/askgpt/tests/testthat/responses/text-davinci-003_ReturnthisRcodeandaddinli.rds |only askgpt-0.1.1/askgpt/DESCRIPTION | 11 - askgpt-0.1.1/askgpt/MD5 | 64 +++-- askgpt-0.1.1/askgpt/NAMESPACE | 3 askgpt-0.1.1/askgpt/NEWS.md | 11 - askgpt-0.1.1/askgpt/R/api.r | 60 +---- askgpt-0.1.1/askgpt/R/askgpt.r | 30 -- askgpt-0.1.1/askgpt/R/code_prompts.r | 8 askgpt-0.1.1/askgpt/R/misc.r |only askgpt-0.1.1/askgpt/R/tutorial_addin.r | 110 +++++----- askgpt-0.1.1/askgpt/R/utils.r | 69 ++++++ askgpt-0.1.1/askgpt/README.md | 13 - askgpt-0.1.1/askgpt/build/vignette.rds |binary askgpt-0.1.1/askgpt/data |only askgpt-0.1.1/askgpt/inst/doc/Usage.Rmd | 4 askgpt-0.1.1/askgpt/inst/doc/Usage.html | 9 askgpt-0.1.1/askgpt/man/askgpt.Rd | 12 - askgpt-0.1.1/askgpt/man/chat_api.Rd | 4 askgpt-0.1.1/askgpt/man/completions_api.Rd | 5 askgpt-0.1.1/askgpt/man/estimate_token.Rd |only askgpt-0.1.1/askgpt/man/figures/logo.png |only askgpt-0.1.1/askgpt/man/new_conversation.Rd |only askgpt-0.1.1/askgpt/man/parse_response.Rd |only askgpt-0.1.1/askgpt/man/token_limits.Rd |only askgpt-0.1.1/askgpt/tests/testthat/asgpt_log.jsonl |only askgpt-0.1.1/askgpt/tests/testthat/responses/gpt-3.5-turbo_ExplainthefollowingRcodet.rds |binary askgpt-0.1.1/askgpt/tests/testthat/responses/gpt-3.5-turbo_Writeatestthatunittestfor.rds |binary askgpt-0.1.1/askgpt/tests/testthat/responses/gpt-3.5-turbo_isthisatest.rds |binary askgpt-0.1.1/askgpt/tests/testthat/responses/gpt-3.5-turbo_whatdoesthisdo1+1.rds |only askgpt-0.1.1/askgpt/tests/testthat/responses/text-davinci-003_AddinlinecommentstothisRc.rds |binary askgpt-0.1.1/askgpt/tests/testthat/responses/text-davinci-003_DocumentthisRfunctionusin.rds |binary askgpt-0.1.1/askgpt/tests/testthat/responses/text-davinci-003_isthisatest.rds |binary askgpt-0.1.1/askgpt/tests/testthat/setup.R | 2 askgpt-0.1.1/askgpt/tests/testthat/test-askgpt.R | 5 askgpt-0.1.1/askgpt/tests/testthat/test-code.R | 4 askgpt-0.1.1/askgpt/tests/testthat/test-tutorial-addin.R | 13 - askgpt-0.1.1/askgpt/tests/testthat/test-utils.R | 4 askgpt-0.1.1/askgpt/vignettes/Usage.Rmd | 4 38 files changed, 245 insertions(+), 200 deletions(-)
Title: Balanced Factorial Designs
Description: Generate balanced factorial designs with crossed and nested random and fixed effects <https://github.com/mmrabe/designr>.
Author: Maximilian M. Rabe [aut, cre] ,
Reinhold Kliegl [aut] ,
Daniel J. Schad [aut]
Maintainer: Maximilian M. Rabe <maximilian.rabe@uni-potsdam.de>
Diff between designr versions 0.1.12 dated 2021-04-22 and 0.1.13 dated 2023-05-05
DESCRIPTION | 8 MD5 | 28 R/simLMM.R | 12 README.md | 236 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/design-to-dataframe.html | 628 +++++++----- inst/doc/power-analyses.html | 1984 ++++++++++++++++++++++---------------- man/design.contrasts.Rd | 4 man/factorContainer-class.Rd | 4 man/fixed.factors.Rd | 4 man/is.designFactor.Rd | 8 man/output.design.Rd | 8 man/simLMM.Rd | 6 man/write.design.Rd | 8 15 files changed, 1725 insertions(+), 1213 deletions(-)
Title: Generate Citation File Format ('cff') Metadata for R Packages
Description: The Citation File Format version 1.2.0
<doi:10.5281/zenodo.5171937> is a human and machine readable file
format which provides citation metadata for software. This package
provides core utilities to generate and validate this metadata.
Author: Diego Hernangomez [aut, cre, cph]
,
Joao Martins [rev] ,
Scott Chamberlain [rev]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between cffr versions 0.4.1 dated 2023-01-30 and 0.5.0 dated 2023-05-05
cffr-0.4.1/cffr/R/cff_extract_to_bibtex.R |only cffr-0.4.1/cffr/man/cff_extract_to_bibtex.Rd |only cffr-0.4.1/cffr/tests/testthat/_snaps/parse_citation.md |only cffr-0.4.1/cffr/tests/testthat/test-cff_extract_to_bibtex.R |only cffr-0.5.0/cffr/DESCRIPTION | 6 cffr-0.5.0/cffr/MD5 | 174 cffr-0.5.0/cffr/NAMESPACE | 1 cffr-0.5.0/cffr/NEWS.md | 223 cffr-0.5.0/cffr/R/assertions.R | 208 cffr-0.5.0/cffr/R/cff_create.R | 31 cffr-0.5.0/cffr/R/cff_description.R | 5 cffr-0.5.0/cffr/R/cff_from_bibtex.R | 14 cffr-0.5.0/cffr/R/cff_gha_update.R | 144 cffr-0.5.0/cffr/R/cff_git_hook.R | 187 cffr-0.5.0/cffr/R/cff_parse_citation.R | 6 cffr-0.5.0/cffr/R/cff_read.R | 406 - cffr-0.5.0/cffr/R/cff_to_bibtex.R | 947 +-- cffr-0.5.0/cffr/R/cff_validate.R | 281 cffr-0.5.0/cffr/R/cff_write.R | 286 - cffr-0.5.0/cffr/R/parse_description.R | 40 cffr-0.5.0/cffr/R/utils.R | 311 - cffr-0.5.0/cffr/R/write_bib.R | 213 cffr-0.5.0/cffr/R/write_citation.R |only cffr-0.5.0/cffr/README.md | 102 cffr-0.5.0/cffr/build/partial.rdb |binary cffr-0.5.0/cffr/build/vignette.rds |binary cffr-0.5.0/cffr/data/cran_to_spdx.rda |binary cffr-0.5.0/cffr/inst/CITATION | 84 cffr-0.5.0/cffr/inst/WORDLIST | 27 cffr-0.5.0/cffr/inst/doc/bibtex_cff.Rmd | 929 +-- cffr-0.5.0/cffr/inst/doc/bibtex_cff.html | 287 - cffr-0.5.0/cffr/inst/doc/cffr.Rmd | 9 cffr-0.5.0/cffr/inst/doc/cffr.html | 196 cffr-0.5.0/cffr/inst/doc/crosswalk.R | 18 cffr-0.5.0/cffr/inst/doc/crosswalk.Rmd | 138 cffr-0.5.0/cffr/inst/doc/crosswalk.html | 1291 ++-- cffr-0.5.0/cffr/inst/examples/DESCRIPTION_bioconductor | 34 cffr-0.5.0/cffr/inst/examples/DESCRIPTION_r_universe | 11 cffr-0.5.0/cffr/inst/yaml/update-citation-cff.yaml | 4 cffr-0.5.0/cffr/man/cff_create.Rd | 14 cffr-0.5.0/cffr/man/cff_from_bibtex.Rd | 4 cffr-0.5.0/cffr/man/cff_to_bibtex.Rd | 79 cffr-0.5.0/cffr/man/cff_validate.Rd | 18 cffr-0.5.0/cffr/man/cff_write.Rd | 6 cffr-0.5.0/cffr/man/encoded_utf_to_latex.Rd | 4 cffr-0.5.0/cffr/man/roxygen2 |only cffr-0.5.0/cffr/man/write_bib.Rd | 9 cffr-0.5.0/cffr/man/write_citation.Rd |only cffr-0.5.0/cffr/tests/testthat/_snaps/bibtex-check-ruby.md | 388 - cffr-0.5.0/cffr/tests/testthat/_snaps/bibtex2cff.md | 848 +- cffr-0.5.0/cffr/tests/testthat/_snaps/cff_create.md | 179 cffr-0.5.0/cffr/tests/testthat/_snaps/cff_description.md | 693 +- cffr-0.5.0/cffr/tests/testthat/_snaps/cff_from_bibtex.md | 88 cffr-0.5.0/cffr/tests/testthat/_snaps/cff_parse_citation.md | 544 - cffr-0.5.0/cffr/tests/testthat/_snaps/cff_parse_person.md | 120 cffr-0.5.0/cffr/tests/testthat/_snaps/cff_read.md | 3409 ++++++------ cffr-0.5.0/cffr/tests/testthat/_snaps/cff_to_bibtex.md | 1118 ++- cffr-0.5.0/cffr/tests/testthat/_snaps/cff_validate.md | 47 cffr-0.5.0/cffr/tests/testthat/_snaps/cff_write.md | 149 cffr-0.5.0/cffr/tests/testthat/_snaps/encoding.md | 177 cffr-0.5.0/cffr/tests/testthat/_snaps/merge_desc_cit.md | 1962 +++--- cffr-0.5.0/cffr/tests/testthat/_snaps/mock-package.md | 147 cffr-0.5.0/cffr/tests/testthat/_snaps/parse_dependencies.md | 79 cffr-0.5.0/cffr/tests/testthat/_snaps/utils-persons.md | 585 +- cffr-0.5.0/cffr/tests/testthat/_snaps/write_bib.md | 34 cffr-0.5.0/cffr/tests/testthat/_snaps/write_citation |only cffr-0.5.0/cffr/tests/testthat/_snaps/write_citation.md |only cffr-0.5.0/cffr/tests/testthat/test-additional-authors.R |only cffr-0.5.0/cffr/tests/testthat/test-assertions.R | 8 cffr-0.5.0/cffr/tests/testthat/test-bibtex-check-ruby.R | 28 cffr-0.5.0/cffr/tests/testthat/test-bibtex2cff.R | 1160 ++-- cffr-0.5.0/cffr/tests/testthat/test-cff_create.R | 11 cffr-0.5.0/cffr/tests/testthat/test-cff_description.R | 714 +- cffr-0.5.0/cffr/tests/testthat/test-cff_from_bibtex.R | 4 cffr-0.5.0/cffr/tests/testthat/test-cff_parse_citation.R | 16 cffr-0.5.0/cffr/tests/testthat/test-cff_parse_person.R | 33 cffr-0.5.0/cffr/tests/testthat/test-cff_read.R | 227 cffr-0.5.0/cffr/tests/testthat/test-cff_to_bibtex.R | 149 cffr-0.5.0/cffr/tests/testthat/test-cff_validate.R | 116 cffr-0.5.0/cffr/tests/testthat/test-cff_write.R | 21 cffr-0.5.0/cffr/tests/testthat/test-encoding.R | 2 cffr-0.5.0/cffr/tests/testthat/test-merge_desc_cit.R | 2 cffr-0.5.0/cffr/tests/testthat/test-mock-package.R | 142 cffr-0.5.0/cffr/tests/testthat/test-parse_citation.R | 37 cffr-0.5.0/cffr/tests/testthat/test-parse_dependencies.R | 2 cffr-0.5.0/cffr/tests/testthat/test-parse_desc_license.R | 2 cffr-0.5.0/cffr/tests/testthat/test-utils-persons.R | 356 - cffr-0.5.0/cffr/tests/testthat/test-utils.R | 16 cffr-0.5.0/cffr/tests/testthat/test-write_bib.R | 213 cffr-0.5.0/cffr/tests/testthat/test-write_citation.R |only cffr-0.5.0/cffr/vignettes/bibtex_cff.Rmd | 929 +-- cffr-0.5.0/cffr/vignettes/cffr.Rmd | 9 cffr-0.5.0/cffr/vignettes/crosswalk.Rmd | 138 93 files changed, 11072 insertions(+), 10577 deletions(-)
Title: Recommender System using Matrix Factorization
Description: R wrapper of the 'libmf' library
<https://www.csie.ntu.edu.tw/~cjlin/libmf/> for recommender
system using matrix factorization. It is typically used to
approximate an incomplete matrix using the product of two
matrices in a latent space. Other common names for this task
include "collaborative filtering", "matrix completion",
"matrix recovery", etc. High performance multi-core parallel
computing is supported in this package.
Author: Yixuan Qiu, David Cortes, Chih-Jen Lin, Yu-Chin Juan, Wei-Sheng Chin,
Yong Zhuang, Bo-Wen Yuan, Meng-Yuan Yang, and other
contributors. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between recosystem versions 0.5 dated 2021-09-19 and 0.5.1 dated 2023-05-05
DESCRIPTION | 11 - MD5 | 18 +- R/RecoSys.R | 4 build/vignette.rds |binary inst/NEWS.Rd | 6 inst/doc/introduction.html | 294 +++++++++++++++++++++++++++++++-------------- man/output.Rd | 2 man/predict.Rd | 2 src/Makevars | 2 src/Makevars.win | 2 10 files changed, 227 insertions(+), 114 deletions(-)
More information about shiny.telemetry at CRAN
Permanent link
Title: 3D Scatter Plot
Description: Plots a three dimensional (3D) point cloud.
Author: Uwe Ligges <ligges@statistik.tu-dortmund.de>, Martin Maechler, Sarah Schnackenberg
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>
Diff between scatterplot3d versions 0.3-43 dated 2023-03-14 and 0.3-44 dated 2023-05-05
CHANGES | 8 +++++--- DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/scatterplot3d.R | 1 + inst/CITATION | 2 +- inst/doc/s3d.pdf |binary 6 files changed, 17 insertions(+), 14 deletions(-)
More information about MixedLevelRSDs at CRAN
Permanent link
Title: DBI Connector to Presto
Description: Implements a 'DBI' compliant interface to Presto. Presto is
an open source distributed SQL query engine for running interactive
analytic queries against data sources of all sizes ranging from
gigabytes to petabytes: <https://prestodb.io/>.
Author: Onur Ismail Filiz [aut],
Sergey Goder [aut],
Jarod G.R. Meng [aut, cre],
Thomas J. Leeper [ctb],
John Myles White [ctb]
Maintainer: Jarod G.R. Meng <jarodm@fb.com>
Diff between RPresto versions 1.4.4 dated 2023-03-09 and 1.4.5 dated 2023-05-05
DESCRIPTION | 6 +-- MD5 | 16 ++++----- NEWS.md | 4 ++ R/dbplyr-src.R | 33 +++++++++++------- R/presto.field_utilities.R | 36 ++++++++++---------- build/vignette.rds |binary inst/doc/common-table-expressions.html | 2 - inst/doc/complex-types.html | 58 +++++++++++++++------------------ inst/doc/primitive-types.html | 7 ++- 9 files changed, 87 insertions(+), 75 deletions(-)
Title: Fragmentation and Connectivity Indices for Riverscapes
Description: Indices for assessing riverscape fragmentation, including the Dendritic Connectivity Index, the Population Connectivity Index, the River Fragmentation Index, the Probability of Connectivity, and the Integral Index of connectivity. For a review, see Jumani et al. (2020) <doi:10.1088/1748-9326/abcb37> and Baldan et al. (2022) <doi:10.1016/j.envsoft.2022.105470> Functions to calculate temporal indices improvement when fragmentation due to barriers is reduced are also included.
Author: Damiano Baldan [aut, cre] ,
David Cunillera-Montcusi [ctb]
,
Andrea Funk [ctb]
Maintainer: Damiano Baldan <damiano.baldan91@gmail.com>
Diff between riverconn versions 0.3.26 dated 2023-03-15 and 0.3.28 dated 2023-05-05
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/index_calculation.R | 13 ++++++++++--- README.md | 6 ++++++ build/vignette.rds |binary inst/doc/Tutorial.html | 26 +++++++++++++------------- 6 files changed, 38 insertions(+), 25 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support Summary and Analysis of
Extension Program Evaluation in R, and An R
Companion for the Handbook of Biological Statistics.
Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 2.4.26 dated 2023-04-03 and 2.4.30 dated 2023-05-05
DESCRIPTION | 16 - MD5 | 272 +++++++++++++++---------------- NEWS.md | 6 R/PMCMRTable.r | 2 R/accuracy.r | 25 ++ R/blom.r | 20 +- R/cateNelson.r | 30 ++- R/cateNelsonFixedY.r | 8 R/cldList.r | 32 ++- R/cliffDelta.r | 22 +- R/cohenG.r | 27 ++- R/cohenH.r | 15 + R/cohenW.r | 12 + R/compareGLM.r | 16 + R/compareLM.r | 15 + R/countRSquare.r | 35 +++ R/cramerV.r | 14 + R/cramerVFit.r | 9 - R/efronRSquared.r | 21 ++ R/epsilonSquared.r | 14 + R/freemanTheta.r | 10 - R/fullPTable.r | 10 + R/groupwiseCMH.r | 13 + R/groupwiseGeometric.r | 13 + R/groupwiseHuber.r | 11 + R/groupwiseMean.r | 11 + R/groupwiseMedian.r | 13 + R/groupwisePercentile.r | 16 + R/groupwiseSum.r | 10 - R/kendallW.r | 13 + R/mangiaficoD.r | 7 R/multiMangiaficoD.r | 24 ++ R/multiVDA.r | 31 ++- R/nagelkerke.r | 12 + R/nominalSymmetryTest.r | 16 + R/oneSampleDominance.r | 11 + R/ordinalEtaSquared.r | 14 + R/pairedSampleDominance.r | 26 +- R/pairwiseMcnemar.r | 25 +- R/pairwiseMedianMatrix.r | 21 +- R/pairwiseMedianTest.r | 23 +- R/pairwiseModelAnova.r | 6 R/pairwiseNominalIndependence.r | 8 R/pairwiseNominalMatrix.r | 17 + R/pairwiseOrdinalIndependence.r | 11 - R/pairwisePercentileTest.r | 27 ++- R/pairwisePermutationMatrix.r | 69 ++++--- R/pairwisePermutationSymmetry.r | 63 ++++--- R/pairwisePermutationSymmetryMatrix.r | 72 ++++---- R/pairwisePermutationTest.r | 60 ++++-- R/percentileTest.r | 18 +- R/phi.r | 13 + R/plotDensityHistogram.r | 11 + R/plotNormalDensity.r | 10 - R/plotNormalHistogram.r | 10 - R/plotPredy.r | 3 R/quantileCI.r | 14 + R/scheirerRayHare.r | 26 +- R/spearmanRho.r | 23 +- R/transformTukey.r | 7 R/vda.r | 10 + R/wilcoxonOR.r | 20 +- R/wilcoxonOneSampleR.r | 7 R/wilcoxonOneSampleRC.r | 9 - R/wilcoxonPS.r | 13 + R/wilcoxonPairedR.r | 8 R/wilcoxonPairedRC.r | 8 R/wilcoxonR.r | 11 + R/wilcoxonRG.r | 8 R/wilcoxonZ.r | 4 inst/CITATION | 4 man/accuracy.Rd | 15 + man/blom.Rd | 8 man/cateNelson.Rd | 10 + man/cateNelsonFixedY.Rd | 6 man/cldList.Rd | 24 +- man/cliffDelta.Rd | 8 man/cohenG.Rd | 18 +- man/cohenH.Rd | 6 man/cohenW.Rd | 8 man/compareGLM.Rd | 11 + man/compareLM.Rd | 11 - man/countRSquare.Rd | 28 ++- man/cramerV.Rd | 10 - man/cramerVFit.Rd | 5 man/efronRSquared.Rd | 14 + man/epsilonSquared.Rd | 12 + man/freemanTheta.Rd | 4 man/fullPTable.Rd | 8 man/groupwiseCMH.Rd | 8 man/groupwiseGeometric.Rd | 9 - man/groupwiseHuber.Rd | 7 man/groupwiseMean.Rd | 7 man/groupwiseMedian.Rd | 9 - man/groupwisePercentile.Rd | 12 - man/groupwiseSum.Rd | 6 man/kendallW.Rd | 9 - man/mangiaficoD.Rd | 3 man/multiMangiaficoD.Rd | 20 +- man/multiVDA.Rd | 13 + man/nagelkerke.Rd | 7 man/nominalSymmetryTest.Rd | 7 man/oneSampleDominance.Rd | 7 man/ordinalEtaSquared.Rd | 11 - man/pairedSampleDominance.Rd | 22 +- man/pairwiseMcnemar.Rd | 7 man/pairwiseMedianMatrix.Rd | 3 man/pairwiseMedianTest.Rd | 3 man/pairwiseModelAnova.Rd | 3 man/pairwiseNominalIndependence.Rd | 5 man/pairwiseNominalMatrix.Rd | 15 + man/pairwiseOrdinalIndependence.Rd | 4 man/pairwisePercentileTest.Rd | 9 - man/pairwisePermutationMatrix.Rd | 51 +++-- man/pairwisePermutationSymmetry.Rd | 47 ++--- man/pairwisePermutationSymmetryMatrix.Rd | 52 +++-- man/pairwisePermutationTest.Rd | 44 +++-- man/percentileTest.Rd | 5 man/phi.Rd | 9 - man/plotDensityHistogram.Rd | 7 man/plotNormalDensity.Rd | 6 man/plotNormalHistogram.Rd | 6 man/plotPredy.Rd | 1 man/quantileCI.Rd | 10 - man/scheirerRayHare.Rd | 8 man/spearmanRho.Rd | 21 +- man/transformTukey.Rd | 4 man/vda.Rd | 6 man/wilcoxonOR.Rd | 3 man/wilcoxonOneSampleR.Rd | 4 man/wilcoxonOneSampleRC.Rd | 5 man/wilcoxonPS.Rd | 10 - man/wilcoxonPairedR.Rd | 4 man/wilcoxonPairedRC.Rd | 5 man/wilcoxonR.Rd | 7 man/wilcoxonRG.Rd | 5 man/wilcoxonZ.Rd | 2 137 files changed, 1522 insertions(+), 723 deletions(-)
Title: Machine Learning Benchmark Problems
Description: A collection of artificial and real-world machine learning
benchmark problems, including, e.g., several
data sets from the UCI repository.
Author: Friedrich Leisch and Evgenia Dimitriadou.
Maintainer: Friedrich Leisch <Friedrich.Leisch@R-project.org>
Diff between mlbench versions 2.1-3 dated 2021-01-29 and 2.1-3.1 dated 2023-05-05
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- man/BreastCancer.Rd | 2 +- man/Ionosphere.Rd | 4 ++-- man/PimaIndiansDiabetes.Rd | 2 +- src/waveform.c | 4 ++-- 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.0.9 dated 2023-04-08 and 1.1.0 dated 2023-05-05
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/forestcox.R | 4 ++-- README.md | 2 +- inst/doc/jstable.html | 30 +++++++++++++++--------------- 6 files changed, 31 insertions(+), 27 deletions(-)
Title: Software Tools to Quantify Structural Importance of Nodes in a
Network
Description: Provides functionality to compute various node centrality measures on networks.
Included are functions to compute betweenness centrality (by utilizing Madduri and Bader's
SNAP library), implementations of Burt's constraint and effective
network size (ENS) metrics, Borgatti's algorithm to identify key players, and Valente's
bridging metric. On Unix systems, the betweenness, Key Players, and
bridging implementations are parallelized with OpenMP, which may run
faster on systems which have OpenMP configured.
Author: Jacobs Simon [aut],
Khanna Aditya [aut],
Madduri Kamesh [ctb],
Bader David [ctb]
Maintainer: ORPHANED
Diff between influenceR versions 0.1.0.1 dated 2021-09-25 and 0.1.0.2 dated 2023-05-05
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- src/keyplayer-utils.c | 2 +- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Data Only Package to 'healthyR'
Description: Provides data for functions typically used in the 'healthyR' package.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR.data versions 1.0.2 dated 2023-01-21 and 1.0.3 dated 2023-05-05
healthyR.data-1.0.2/healthyR.data/man/figures/test1.png |only healthyR.data-1.0.2/healthyR.data/man/figures/test3.png |only healthyR.data-1.0.2/healthyR.data/man/figures/test4.png |only healthyR.data-1.0.3/healthyR.data/DESCRIPTION | 19 ++- healthyR.data-1.0.3/healthyR.data/MD5 | 54 ++++++++-- healthyR.data-1.0.3/healthyR.data/NAMESPACE | 21 +++ healthyR.data-1.0.3/healthyR.data/NEWS.md | 32 +++++ healthyR.data-1.0.3/healthyR.data/R/dl-cur-hosp-data-dict.R |only healthyR.data-1.0.3/healthyR.data/R/dl-cur-hosp-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-asc-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-asc-qr-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-comp-death-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-hai-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-hcahps-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-hvbp-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-image-efficiency.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-ip-psy-facility-qr-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-maternal-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-mhs-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-opqr-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-payment-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-pch-hcahps-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-pch-oncology-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-pch-outcomes-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-pchhai-hosp-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-timely-eff-care-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-unplanned-hosp-data.R |only healthyR.data-1.0.3/healthyR.data/R/get-cur-va-data.R |only healthyR.data-1.0.3/healthyR.data/README.md | 4 healthyR.data-1.0.3/healthyR.data/man/current_asc_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_asc_oas_cahps_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_comp_death_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_hai_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_hcahps_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_hosp_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_hosp_data_dict.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_hvbp_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_ipfqr_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_maternal_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_medicare_hospital_spending_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_oqr_oas_cahps_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_outpatient_imaging_efficiency_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_payments_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_pch_hai_hospital_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_pch_hcahps_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_pch_oncology_measures_hospital_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_pch_outcomes_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_timely_and_effective_care_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_unplanned_hospital_visits_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/current_va_data.Rd |only healthyR.data-1.0.3/healthyR.data/man/figures/logo.png |only 51 files changed, 113 insertions(+), 17 deletions(-)
Title: Transform Files to 'microtable' Object with 'microeco' Package
Description: Transform output files of some tools to the 'microtable' object of 'microtable' class in 'microeco' package. The 'microtable' class is the basic class in 'microeco' package and is necessary for the downstream microbial community data analysis.
Author: Chi Liu [aut, cre]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between file2meco versions 0.5.0 dated 2022-11-15 and 0.6.0 dated 2023-05-05
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++++++------ NAMESPACE | 1 + R/help.R |only R/humann2meco.R | 22 ++++++++++++++-------- R/qiime2meco.R | 14 ++++++-------- R/vs2meco.R |only inst/CITATION | 20 +++++--------------- inst/extdata/viromescan |only man/file2meco.Rd |only man/humann2meco.Rd | 22 ++++++++++++++-------- man/vs2meco.Rd |only 12 files changed, 58 insertions(+), 49 deletions(-)
Title: A Fast Solver for Parameterized LP Problems, Constrained L1
Minimization Approach to Sparse Precision Matrix Estimation and
Dantzig Selector
Description: Provides a method of recovering the precision matrix efficiently
and solving for the dantzig selector by applying the parametric
simplex method. The computation is based on a linear optimization
solver. It also contains a generic LP solver and a parameterized LP
solver using parametric simplex method.
Author: Haotian Pang, Di Qi, Han Liu and Robert Vanderbei
Maintainer: ORPHANED
Diff between fastclime versions 1.4.1 dated 2016-04-29 and 1.4.1.1 dated 2023-05-05
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/lu.c | 2 +- src/lu.h | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Connect to an OMOP Common Data Model
Description: Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.
Author: Adam Black [aut, cre] ,
Artem Gorbachev [aut],
Edward Burn [aut],
Marti Catala Sabate [aut]
Maintainer: Adam Black <black@ohdsi.org>
Diff between CDMConnector versions 0.5.1 dated 2023-03-22 and 0.6.0 dated 2023-05-05
DESCRIPTION | 12 +- MD5 | 62 ++++++------ NAMESPACE | 9 + NEWS.md | 7 + R/CDMConnector-package.R | 3 R/cdm.R | 42 +++++++- R/compute.R | 9 + R/dateadd.R | 118 +++++++++++++++++------ R/generateCohortSet.R | 80 ++++++++++++--- R/utils.R | 22 ++++ inst/doc/a01_getting-started.html | 6 - inst/doc/a02_Working_with_cohorts.R | 19 --- inst/doc/a02_Working_with_cohorts.Rmd | 24 ---- inst/doc/a02_Working_with_cohorts.html | 88 +++++++---------- inst/doc/a05_cdm_reference_backends.html | 8 - inst/rds/gibleed.rds |binary inst/rds/gibleed_attrition.rds |binary inst/rds/gibleed_count.rds |binary inst/rds/gibleed_set.rds |binary man/cdmDisconnect.Rd |only man/cdm_from_con.Rd | 10 + man/datepart.Rd |only man/generateCohortSet.Rd | 6 - man/inSchema.Rd |only man/stow.Rd | 2 man/uniqueTableName.Rd |only tests/testthat/test-cdm.R | 72 +++++++------- tests/testthat/test-cdmSubset.R | 4 tests/testthat/test-compute.R | 1 tests/testthat/test-dateadd.R | 70 ++++++++++--- tests/testthat/test-generateCohortSet.R | 159 +++++++++++++++++++++---------- tests/testthat/test-listTables.R | 1 tests/testthat/test-summarise_quantile.R | 46 +++++++- vignettes/a02_Working_with_cohorts.Rmd | 24 ---- 34 files changed, 582 insertions(+), 322 deletions(-)
Title: Specify (Pre)Registrations and Export Them Human- And
Machine-Readably
Description: Preregistrations, or more generally, registrations, enable
explicit timestamped and (often but not necessarily publicly) frozen
documentation of plans and expectations as well as decisions and
justifications. In research, preregistrations are commonly used to
clearly document plans and facilitate justifications of deviations from
those plans, as well as decreasing the effects of publication bias by
enabling identification of research that was conducted but not published.
Like reporting guidelines, (pre)registration forms often have specific
structures that facilitate systematic reporting of important items. The
'preregr' package facilitates specifying (pre)registrations in R and
exporting them to a human-readable format (using R Markdown partials or
exporting to an 'HTML' file) as well as human-readable embedded data
(using 'JSON'), as well as importing such exported (pre)registration
specifications from such embedded 'JSON'.
Author: Gjalt-Jorn Peters [aut, cre] ,
Szilvia Zoergő [ctb] ,
Olmo den Akker [ctb] ,
Aleksandra Lazic [ctb] ,
Thomas Gueltzow [ctb]
Maintainer: Gjalt-Jorn Peters <preregr@opens.science>
Diff between preregr versions 0.2.8 dated 2023-03-05 and 0.2.9 dated 2023-05-05
DESCRIPTION | 6 +-- MD5 | 45 +++++++++++++---------- R/forms_that_are_included.R | 45 +++++++++++++++++++++++ build/vignette.rds |binary data/form_genSysRev_v1.rda |only inst/doc/creating_prereg_form.html | 38 +++++++++---------- inst/doc/form_OSFprereg_v1.html | 18 ++++----- inst/doc/form_OSFqual1_v1.html | 20 +++++----- inst/doc/form_genSysRev_v1.R |only inst/doc/form_genSysRev_v1.Rmd |only inst/doc/form_genSysRev_v1.html |only inst/doc/form_generalPurpose_v1.html | 14 +++---- inst/doc/form_generalPurpose_v1_1.html | 14 +++---- inst/doc/form_inclDivAddon_v0_1.html | 24 ++++++------ inst/doc/form_inclSysRev_v0_92.html | 24 ++++++------ inst/doc/form_prereg2D_v1.html | 22 +++++------ inst/doc/form_preregQE_v0_93.html | 26 ++++++------- inst/doc/form_preregQE_v0_94.html | 30 +++++++-------- inst/doc/form_preregQE_v0_95.html | 28 +++++++------- inst/doc/form_prpQuant_v1.html | 18 ++++----- inst/doc/importing_form_from_url.html | 16 ++++---- inst/doc/importing_pregistration_from_url.html | 6 +-- inst/doc/rmd_template_from_form.html | 6 +-- inst/doc/specifying_prereg_content.html | 6 +-- inst/extdata/preregr-form_form_genSysRev_v1.xlsx |only man/form_genSysRev_v1.Rd |only vignettes/form_genSysRev_v1.Rmd |only 27 files changed, 229 insertions(+), 177 deletions(-)
Title: Simulate and Analyse Bayesian Platform Trial with Time Trend
Description: Simulating the multi-arm multi-stage or platform trial with Bayesian approach using the 'rstan' package, which provides the R interface for the Stan.
This package supports fixed ratio and Bayesian adaptive randomization approaches for randomization.
Additionally, it allows for the study of time trend problems in platform trials.
There are demos available for a multi-arm multi-stage trial with two different null scenarios, as well as for Bayesian trial cutoff screening.
The Bayesian adaptive randomisation approaches are described in:
Trippa et al. (2012) <doi:10.1200/JCO.2011.39.8420> and
Wathen et al. (2017) <doi:10.1177/1740774517692302>.
The randomisation algorithm is described in:
Zhao W <doi:10.1016/j.cct.2015.06.008>.
The analysis methods of time trend effect in platform trial are described in:
Saville et al. (2022) <doi:10.1177/17407745221112013> and
Bofill Roig et al. (2022) <doi:10.1186/s12874-022-01683-w>.
Author: Ziyan Wang [aut, cre]
Maintainer: Ziyan Wang <zw7g20@soton.ac.uk>
Diff between BayesianPlatformDesignTimeTrend versions 1.0.1 dated 2023-05-02 and 1.1.0 dated 2023-05-05
DESCRIPTION | 8 ++-- MD5 | 42 ++++++++++++++--------- NAMESPACE | 5 ++ NEWS.md | 27 +++++++++++--- R/Demo_CutoffScreening_GP.R |only R/MainFunction.R | 1 R/Screening_GP_optim.R |only R/Simulation_Stansamplesummarytolist_Fixeffect.R | 9 ++++ R/Transferdatatolist_Stopboundinf.R | 6 +-- R/datafile_document.R | 12 ++++++ build/vignette.rds |binary data/optimdata.rda |only inst/doc/MAMS-CutoffScreening-GP-tutorial.R |only inst/doc/MAMS-CutoffScreening-GP-tutorial.Rmd |only inst/doc/MAMS-CutoffScreening-GP-tutorial.html |only inst/doc/MAMS-CutoffScreening-tutorial.Rmd | 5 +- inst/doc/MAMS-CutoffScreening-tutorial.html | 14 ++----- inst/doc/MAMS-trial-simulation-tutorial.Rmd | 1 inst/doc/MAMS-trial-simulation-tutorial.html | 2 + man/GP.optim.Rd |only man/Stopboundinf.Rd | 2 - man/demo_Cutoffscreening.GP.Rd |only man/optimdata.Rd |only man/resultstantoRfunc.Rd | 13 ++++++- vignettes/MAMS-CutoffScreening-GP-tutorial.Rmd |only vignettes/MAMS-CutoffScreening-tutorial.Rmd | 5 +- vignettes/MAMS-trial-simulation-tutorial.Rmd | 1 27 files changed, 108 insertions(+), 45 deletions(-)
More information about BayesianPlatformDesignTimeTrend at CRAN
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2015-08-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-19 1.0.8
2022-01-21 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-07 1.0.0
2021-08-25 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-21 0.1.0