Title: Sensitivity Analysis Using the Trimmed Means Estimator
Description: Sensitivity analysis using the trimmed means estimator.
Author: Audinga-Dea Hazewinkel [aut, cre]
,
Tom Palmer [aut] ,
Kate Tilling [aut] ,
Kaitlin Wade [aut] ,
Jack Bowden [aut]
Maintainer: Audinga-Dea Hazewinkel <dea.hazew@gmail.com>
Diff between tmsens versions 0.2.0 dated 2023-03-30 and 0.3.0 dated 2023-05-10
DESCRIPTION | 43 - MD5 | 21 NAMESPACE | 10 NEWS.md | 23 R/TM_bias.R | 1020 ++++++++++++++++++++---------------------- R/tmF.R | 707 ++++++++++++++--------------- inst |only man/summary.tm.Rd | 1 man/tm.Rd | 3 man/tm_bias.Rd | 8 tests/testthat/test-tm_bias.R | 4 tests/testthat/test-tmf.R | 3 12 files changed, 905 insertions(+), 938 deletions(-)
Title: Generalized Random Forests
Description: Forest-based statistical estimation and inference.
GRF provides non-parametric methods for heterogeneous treatment effects estimation
(optionally using right-censored outcomes, multiple treatment arms or outcomes, or instrumental variables),
as well as least-squares regression, quantile regression, and survival regression,
all with support for missing covariates.
Author: Julie Tibshirani [aut, cre],
Susan Athey [aut],
Rina Friedberg [ctb],
Vitor Hadad [ctb],
David Hirshberg [ctb],
Luke Miner [ctb],
Erik Sverdrup [aut],
Stefan Wager [aut],
Marvin Wright [ctb]
Maintainer: Julie Tibshirani <jtibs@cs.stanford.edu>
Diff between grf versions 2.2.1 dated 2022-12-14 and 2.3.0 dated 2023-05-10
DESCRIPTION | 8 +- MD5 | 44 ++++++++-------- R/average_treatment_effect.R | 6 +- R/causal_survival_forest.R | 82 +++++++++++++++++++----------- R/forest_summary.R | 39 ++++++++++---- R/get_scores.R | 56 +++++++++++++++----- R/lm_forest.R | 15 +++-- R/multi_arm_causal_forest.R | 41 ++++++++------- R/multi_regression_forest.R | 6 +- R/probability_forest.R | 1 R/rank_average_treatment.R | 4 - R/survival_forest.R | 4 - man/best_linear_projection.Rd | 9 ++- man/causal_survival_forest.Rd | 15 ++--- man/get_scores.causal_survival_forest.Rd | 6 +- man/get_scores.multi_arm_causal_forest.Rd | 4 + man/multi_arm_causal_forest.Rd | 15 ++--- man/predict.lm_forest.Rd | 3 + man/predict.multi_arm_causal_forest.Rd | 14 +++-- man/predict.multi_regression_forest.Rd | 4 + man/survival_forest.Rd | 4 - src/Makevars | 3 - src/optional/optional.hpp | 40 ++++++++++---- 23 files changed, 274 insertions(+), 149 deletions(-)
Title: Scoring Rules for Parametric and Simulated Distribution
Forecasts
Description: Dictionary-like reference for computing scoring rules in a wide
range of situations. Covers both parametric forecast distributions (such as
mixtures of Gaussians) and distributions generated via simulation.
Author: Alexander I. Jordan [aut] ,
Fabian Krueger [aut, cre] ,
Sebastian Lerch [aut] ,
Sam Allen [aut],
Maximiliane Graeter [ctb]
Maintainer: Fabian Krueger <Fabian.Krueger83@gmail.com>
Diff between scoringRules versions 1.0.2 dated 2022-09-19 and 1.1.1 dated 2023-05-10
DESCRIPTION | 31 +++++++++++++++++++------ MD5 | 41 ++++++++++++++++++++-------------- NAMESPACE | 9 +++++++ R/RcppExports.R | 8 ++++++ R/scores_sample_multiv.R | 16 +++++++++---- R/scores_sample_multiv_weighted.R |only R/scores_sample_univ.R | 2 + R/scores_sample_univ_weighted.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/article.R | 4 +-- inst/doc/article.Rnw | 16 ++++++------- inst/doc/article.pdf |binary inst/doc/article_weighted_scores.R |only inst/doc/article_weighted_scores.Rnw |only inst/doc/article_weighted_scores.pdf |only inst/doc/gettingstarted.pdf |binary man/scores_sample_multiv.Rd | 5 +++- man/scores_sample_multiv_weighted.Rd |only man/scores_sample_univ.Rd | 3 ++ man/scores_sample_univ_weighted.Rd |only src/RcppExports.cpp | 31 +++++++++++++++++++++++++ src/procs_es.cpp | 36 +++++++++++++++++++++++++++++ vignettes/article.Rnw | 16 ++++++------- vignettes/article_weighted_scores.Rnw |only vignettes/bibliography_weighted.bib |only 26 files changed, 171 insertions(+), 47 deletions(-)
Title: Robust Marginal Bayesian Variable Selection for Gene-Environment
Interactions
Description: Recently, multiple marginal variable selection methods have been developed and shown to be effective in Gene-Environment interactions studies. We propose a novel marginal Bayesian variable selection method for Gene-Environment interactions studies. In particular, our marginal Bayesian method is robust to data contamination and outliers in the outcome variables. With the incorporation of spike-and-slab priors, we have implemented the Gibbs sampler based on Markov Chain Monte Carlo. The core algorithms of the package have been developed in 'C++'.
Author: Xi Lu [aut, cre],
Cen Wu [aut]
Maintainer: Xi Lu <xilu@ksu.edu>
Diff between marble versions 0.0.1 dated 2023-05-02 and 0.0.2 dated 2023-05-10
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/GxESelection.R | 2 +- R/marble.R | 4 ++-- man/GxESelection.Rd | 2 +- man/marble.Rd | 4 ++-- 6 files changed, 15 insertions(+), 15 deletions(-)
Title: Nested Cross Validation for the Relaxed Lasso and Other Machine
Learning Models
Description: Cross validation informed Relaxed LASSO, Artificial Neural Network (ANN), gradient boosting machine ('xgboost'), Recursive Partitioning ('RPART') or step wise regression models are fit. Nested cross validation to estimate and compare performances between these models is also performed.
For some datasets, for example when the design matrix is not of full rank, 'glmnet' may have very long run times when fitting the relaxed lasso model, from our experience when fitting Cox models on data with many predictors and many patients, making it difficult to get solutions from either glmnet() or cv.glmnet(). This may be remedied with the 'path=TRUE' options when calling cv.glmnet(). This option is not described in the 'glmnet' Reference Manual but is described in the 'glmnet' "The Relaxed Lasso" vignette. In this package, 'glmnetr', we provide a similar workaround and solve for the non penalized relaxed model where gamma=0 for model structures analogue to 'R' functions like glm() or coxph() of [...truncated...]
Author: Walter K Kremers [aut, cre] ,
Nicholas B Larson [ctb]
Maintainer: Walter K Kremers <kremers.walter@mayo.edu>
Diff between glmnetr versions 0.1-2 dated 2023-02-18 and 0.2-0 dated 2023-05-10
glmnetr-0.1-2/glmnetr/R/cv.glmnetr_230218.R |only glmnetr-0.1-2/glmnetr/R/nested.glmnetr_230218.R |only glmnetr-0.1-2/glmnetr/R/plot.cv.glmnetr_230218.R |only glmnetr-0.1-2/glmnetr/R/summary.cv.glmnetr_230218.R |only glmnetr-0.1-2/glmnetr/R/summary.nested.glmnetr_230218.R |only glmnetr-0.1-2/glmnetr/inst/doc/Using_glmnetr_230218.pdf |only glmnetr-0.1-2/glmnetr/inst/doc/Using_glmnetr_230218.pdf.asis |only glmnetr-0.1-2/glmnetr/inst/doc/Using_stepreg_230218.pdf |only glmnetr-0.1-2/glmnetr/inst/doc/Using_stepreg_230218.pdf.asis |only glmnetr-0.1-2/glmnetr/man/difftime1.Rd |only glmnetr-0.1-2/glmnetr/man/difftime2.Rd |only glmnetr-0.1-2/glmnetr/vignettes/Using_glmnetr_230218.Rmd |only glmnetr-0.1-2/glmnetr/vignettes/Using_glmnetr_230218.pdf.asis |only glmnetr-0.1-2/glmnetr/vignettes/Using_stepreg_230218.Rmd |only glmnetr-0.1-2/glmnetr/vignettes/Using_stepreg_230218.pdf.asis |only glmnetr-0.2-0/glmnetr/DESCRIPTION | 26 +- glmnetr-0.2-0/glmnetr/MD5 | 95 +++++--- glmnetr-0.2-0/glmnetr/NAMESPACE | 50 ++++ glmnetr-0.2-0/glmnetr/R/ann_tab_cv_230509.R |only glmnetr-0.2-0/glmnetr/R/cv.glmnetr_230508.R |only glmnetr-0.2-0/glmnetr/R/globalVariables_230509.R |only glmnetr-0.2-0/glmnetr/R/nested.glmnetr_230508.R |only glmnetr-0.2-0/glmnetr/R/plot.cv.glmnetr_230508.R |only glmnetr-0.2-0/glmnetr/R/predict_ann_tab_230508.R |only glmnetr-0.2-0/glmnetr/R/summary.cv.glmnetr_230508.R |only glmnetr-0.2-0/glmnetr/R/summary.nested.glmnetr_230508.R |only glmnetr-0.2-0/glmnetr/R/xgbm_tuned_230322.R |only glmnetr-0.2-0/glmnetr/build/vignette.rds |binary glmnetr-0.2-0/glmnetr/inst/doc/Using_ann_tab_cv_230510.pdf |only glmnetr-0.2-0/glmnetr/inst/doc/Using_ann_tab_cv_230510.pdf.asis |only glmnetr-0.2-0/glmnetr/inst/doc/Using_glmnetr_230510.pdf |only glmnetr-0.2-0/glmnetr/inst/doc/Using_glmnetr_230510.pdf.asis |only glmnetr-0.2-0/glmnetr/inst/doc/Using_stepreg_230510.pdf |only glmnetr-0.2-0/glmnetr/inst/doc/Using_stepreg_230510.pdf.asis |only glmnetr-0.2-0/glmnetr/man/ann_tab_cv.Rd |only glmnetr-0.2-0/glmnetr/man/ann_tab_cv_best.Rd |only glmnetr-0.2-0/glmnetr/man/bsint.Rd |only glmnetr-0.2-0/glmnetr/man/calceloss.Rd |only glmnetr-0.2-0/glmnetr/man/cox.sat.dev.Rd | 2 glmnetr-0.2-0/glmnetr/man/cv.glmnetr.Rd | 15 - glmnetr-0.2-0/glmnetr/man/diff_time.Rd |only glmnetr-0.2-0/glmnetr/man/diff_time1.Rd |only glmnetr-0.2-0/glmnetr/man/dtstndrz.Rd |only glmnetr-0.2-0/glmnetr/man/factor.foldid.Rd |only glmnetr-0.2-0/glmnetr/man/getlamgam.Rd | 2 glmnetr-0.2-0/glmnetr/man/glmnetr.Rd | 6 glmnetr-0.2-0/glmnetr/man/glmnetr.compcv.Rd | 2 glmnetr-0.2-0/glmnetr/man/glmnetr.compcv0.Rd | 2 glmnetr-0.2-0/glmnetr/man/glmnetr.foldid.Rd |only glmnetr-0.2-0/glmnetr/man/glmnetr.simdata.Rd | 8 glmnetr-0.2-0/glmnetr/man/glmnetr_devratio.Rd | 2 glmnetr-0.2-0/glmnetr/man/glmnetrll_1fold.Rd | 2 glmnetr-0.2-0/glmnetr/man/nested.glmnetr.Rd | 113 +++++++--- glmnetr-0.2-0/glmnetr/man/plot.cv.glmnetr.Rd | 8 glmnetr-0.2-0/glmnetr/man/plot.glmnetr.Rd | 4 glmnetr-0.2-0/glmnetr/man/plot.nested.glmnetr.Rd | 2 glmnetr-0.2-0/glmnetr/man/predict.cv.glmnetr.Rd | 2 glmnetr-0.2-0/glmnetr/man/predict.glmnetr.Rd | 4 glmnetr-0.2-0/glmnetr/man/predict.nested.glmnetr.Rd | 2 glmnetr-0.2-0/glmnetr/man/predict_ann_tab.Rd |only glmnetr-0.2-0/glmnetr/man/prednn_tl.Rd |only glmnetr-0.2-0/glmnetr/man/print.nested.glmnetr.Rd |only glmnetr-0.2-0/glmnetr/man/summary.cv.glmnetr.Rd | 2 glmnetr-0.2-0/glmnetr/man/summary.nested.glmnetr.Rd | 8 glmnetr-0.2-0/glmnetr/man/wtlast.Rd |only glmnetr-0.2-0/glmnetr/man/wtmiddle.Rd |only glmnetr-0.2-0/glmnetr/man/wtzero.Rd |only glmnetr-0.2-0/glmnetr/man/xgb.simple.Rd |only glmnetr-0.2-0/glmnetr/man/xgb.tuned.Rd |only glmnetr-0.2-0/glmnetr/vignettes/Using_ann_tab_cv_230510.Rmd |only glmnetr-0.2-0/glmnetr/vignettes/Using_ann_tab_cv_230510.pdf.asis |only glmnetr-0.2-0/glmnetr/vignettes/Using_glmnetr_230510.Rmd |only glmnetr-0.2-0/glmnetr/vignettes/Using_glmnetr_230510.pdf.asis |only glmnetr-0.2-0/glmnetr/vignettes/Using_stepreg_230510.Rmd |only glmnetr-0.2-0/glmnetr/vignettes/Using_stepreg_230510.pdf.asis |only 75 files changed, 253 insertions(+), 104 deletions(-)
Title: Animated Graph Layout Viewer
Description: Provides 'Java' graphical user interfaces
for viewing, manipulating and plotting graphs.
Graphs may be directed or undirected.
Author: Alun Thomas
Maintainer: Alun Thomas <Alun.Thomas@utah.edu>
Diff between rviewgraph versions 1.4.1 dated 2021-05-12 and 1.4.2 dated 2023-05-10
rviewgraph-1.4.1/rviewgraph/java/RViewGraphBuild.java |only rviewgraph-1.4.2/rviewgraph/DESCRIPTION | 12 rviewgraph-1.4.2/rviewgraph/MD5 | 41 - rviewgraph-1.4.2/rviewgraph/R/rviewgraph-package.R | 4 rviewgraph-1.4.2/rviewgraph/build/vignette.rds |binary rviewgraph-1.4.2/rviewgraph/inst/doc/graphsamplerhtml.html | 355 ++++++---- rviewgraph-1.4.2/rviewgraph/inst/doc/graphsamplerpdf.pdf |binary rviewgraph-1.4.2/rviewgraph/inst/java/rviewgraph.jar |binary rviewgraph-1.4.2/rviewgraph/java/META-INF/MANIFEST.MF | 2 rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/graph/DAGLocator.java | 6 rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/graph/Graph.java | 3 rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/graph/GraphSkeleton.java | 53 + rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/graph/Graphs.java | 3 rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/graph/LocatedMaskedGraph.java | 21 rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/graph/MutableGraph.java | 8 rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/graph/Network.java | 8 rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/hashing/RandomSet.java | 6 rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/util/InputFormatter.java | 5 rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/util/RandomBag.java | 7 rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/viewgraph/GraphAnimator.java | 6 rviewgraph-1.4.2/rviewgraph/java/jpsgcs/alun/viewgraph/PaintableGraph.java | 2 rviewgraph-1.4.2/rviewgraph/man/rviewgraph-package.Rd | 4 22 files changed, 340 insertions(+), 206 deletions(-)
Title: Air Quality Data Analysis
Description: Utilities for working with hourly air quality monitoring data
with a focus on small particulates (PM2.5). A compact data model is
structured as a list with two dataframes. A 'meta' dataframe contains
spatial and measuring device metadata associated with deployments at known
locations. A 'data' dataframe contains a 'datetime' column followed by
columns of measurements associated with each "device-deployment".
Algorithms to calculate NowCast and the associated Air Quality Index (AQI)
are defined at the US Environmental Projection Agency AirNow program:
<https://www.airnow.gov/sites/default/files/2020-05/aqi-technical-assistance-document-sept2018.pdf>.
Author: Jonathan Callahan [aut, cre],
Spencer Pease [ctb],
Hans Martin [ctb],
Rex Thompson [ctb]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between AirMonitor versions 0.3.9 dated 2023-02-05 and 0.3.11 dated 2023-05-10
DESCRIPTION | 10 +-- MD5 | 36 +++++++------- NAMESPACE | 1 NEWS.md | 9 +++ R/airnow_loadAnnual.R | 3 + R/airnow_loadDaily.R | 3 + R/airnow_loadLatest.R | 3 + R/airnow_loadMonthly.R | 3 + R/airsis_loadAnnual.R | 3 + R/airsis_loadDaily.R | 3 + R/airsis_loadLatest.R | 3 + R/epa_aqs_loadAnnual.R | 3 + R/monitor_arrange.R |only R/wrcc_loadAnnual.R | 3 + R/wrcc_loadDaily.R | 3 + R/wrcc_loadLatest.R | 3 + README.md | 3 - inst/doc/AirMonitor.html | 64 ++++++++++++------------- inst/doc/Data_Model.html | 120 +++++++++++++++++++++++------------------------ man/monitor_arrange.Rd |only 20 files changed, 159 insertions(+), 117 deletions(-)
Title: Calculate Indices and Theoretical Physicochemical Properties of
Protein Sequences
Description: Includes functions to calculate several physicochemical properties and indices for amino-acid sequences as well as to read and plot 'XVG' output files from the 'GROMACS' molecular dynamics package.
Author: Daniel Osorio [aut, cre] ,
Paola Rondon-Villarreal [aut, ths]
,
Rodrigo Torres [aut, ths] ,
J. Sebastian Paez [ctb] ,
Luis Pedro Coelho [ctb] ,
Richel J.C. Bilderbeek [ctb] ,
Florian C. Sigloch [ctb]
Maintainer: Daniel Osorio <daniecos@uio.no>
Diff between Peptides versions 2.4.4 dated 2021-05-14 and 2.4.5 dated 2023-05-10
Peptides-2.4.4/Peptides/NEWS.md |only Peptides-2.4.5/Peptides/DESCRIPTION | 8 ++++---- Peptides-2.4.5/Peptides/MD5 | 11 +++++------ Peptides-2.4.5/Peptides/inst/CITATION | 11 ++++++----- Peptides-2.4.5/Peptides/man/mw.Rd | 3 +++ Peptides-2.4.5/Peptides/src/RcppExports.cpp | 5 +++++ Peptides-2.4.5/Peptides/src/init.c | 2 +- 7 files changed, 24 insertions(+), 16 deletions(-)
Title: Bayesian Modeling and Causal Inference for Multivariate
Longitudinal Data
Description: Easy-to-use and efficient interface for
Bayesian inference of complex panel (time series) data using dynamic
multivariate panel models by Helske and Tikka (2022)
<doi:10.31235/osf.io/mdwu5>. The package supports joint modeling of multiple
measurements per individual, time-varying and time-invariant effects, and a
wide range of discrete and continuous distributions. Estimation of these
dynamic multivariate panel models is carried out via 'Stan'. For an
in-depth tutorial of the package, see (Tikka and Helske, 2023)
<arxiv:2302.01607>.
Author: Santtu Tikka [aut, cre] ,
Jouni Helske [aut] ,
Nicholas Clark [rev],
Lucy D’Agostino McGowan [rev]
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between dynamite versions 1.3.3 dated 2023-04-18 and 1.4.1 dated 2023-05-10
DESCRIPTION | 10 MD5 | 88 NEWS.md | 275 + R/as_data_frame.R | 1 R/dynamite.R | 303 +- R/dynamiteformula.R | 66 R/getters.R | 4 R/lags.R | 1121 ++++---- R/predict.R | 3 R/predict_helpers.R | 80 R/prepare_stan_input.R | 47 R/print.R | 9 R/specials.R | 634 ++-- R/splines.R | 8 R/stan_utilities.R | 18 R/stanblocks.R | 78 R/stanblocks_families.R | 4188 ++++++++++++++++++------------ R/sysdata.rda |binary R/utilities.R | 875 +++--- README.md | 37 data/categorical_example_fit.rda |binary data/gaussian_example_fit.rda |binary data/multichannel_example_fit.rda |binary inst/doc/dynamite.html | 90 inst/doc/dynamite_priors.Rmd | 200 - man/as.data.frame.dynamitefit.Rd | 1 man/dynamite.Rd | 22 man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/get_code.Rd | 4 man/get_data.Rd | 4 man/get_parameter_dims.Rd | 4 man/get_priors.Rd | 4 man/splines.Rd | 7 tests/testthat/test-cmdstanr.R | 281 +- tests/testthat/test-edgecases.R | 2 tests/testthat/test-extended.R | 17 tests/testthat/test-internals.R | 3 tests/testthat/test-lfactor.R | 410 +- tests/testthat/test-output.R | 77 tests/testthat/test-recovery.R | 22 vignettes/dynamite.bib | 2 vignettes/dynamite_priors.Rmd | 200 - 45 files changed, 5230 insertions(+), 3965 deletions(-)
Title: Descriptive 3D Multidimensional Item Response Theory Modeling
Description: The 'D3mirt' package is used for identifying, estimating, and plotting descriptive multidimensional item response theory models, restricted to 3D and dichotomous or polytomous data that fit the two-parameter logistic model or the graded response model.
The method is foremost explorative and centered around the plot function that exposes item characteristics and constructs, represented by vector arrows, located in a three-dimensional interactive space.
The results can be useful for item-level analysis as well as test development.
Author: Erik Forsberg [aut, cre, cph]
Maintainer: Erik Forsberg <forsbergpsychometrics@gmail.com>
Diff between D3mirt versions 1.0.1 dated 2023-04-28 and 1.0.2 dated 2023-05-10
DESCRIPTION | 14 - MD5 | 38 +- NEWS.md | 6 R/D3mirt.R | 60 ++-- R/data.R | 2 R/modid.R | 38 +- R/plotD3mirt.R | 143 +++++----- R/summary.R | 6 README.md | 417 ++++++++++++++++++++----------- inst/CITATION | 6 inst/doc/Intro_to_D3mirt.R | 10 inst/doc/Intro_to_D3mirt.Rmd | 203 +++++++-------- inst/doc/Intro_to_D3mirt.html | 552 ++++++++++++++++++++++-------------------- man/D3mirt.Rd | 57 +--- man/anes0809offwaves.Rd | 2 man/figures/logo.png |binary man/modid.Rd | 39 +- man/plotD3mirt.Rd | 143 +++++----- man/summary.D3mirt.Rd | 6 vignettes/Intro_to_D3mirt.Rmd | 203 +++++++-------- 20 files changed, 1048 insertions(+), 897 deletions(-)
Title: Functions for Nonlinear Least Squares Solutions - Updated 2022
Description: Provides tools for working with nonlinear least squares problems.
For the estimation of models reliable and robust tools than nls(), where the
the Gauss-Newton method frequently stops with 'singular gradient' messages.
This is accomplished by using, where possible, analytic derivatives to compute
the matrix of derivatives and a stabilization of the solution of the estimation
equations. Tools for approximate or externally supplied derivative matrices
are included. Bounds and masks on parameters are handled properly.
Author: John C Nash [aut, cre],
Duncan Murdoch [aut],
Fernando Miguez [ctb],
Arkajyoti Bhattacharjee [ctb]
Maintainer: John C Nash <nashjc@uottawa.ca>
Diff between nlsr versions 2023.2.12 dated 2023-02-14 and 2023.5.8 dated 2023-05-10
nlsr-2023.2.12/nlsr/man/pnlm0.Rd |only nlsr-2023.2.12/nlsr/man/pnls0.Rd |only nlsr-2023.5.8/nlsr/DESCRIPTION | 8 +-- nlsr-2023.5.8/nlsr/MD5 | 36 ++++++++++------- nlsr-2023.5.8/nlsr/NAMESPACE | 4 - nlsr-2023.5.8/nlsr/NEWS | 12 +++++ nlsr-2023.5.8/nlsr/R/nlsr.package.R | 19 +++++++- nlsr-2023.5.8/nlsr/README.md |only nlsr-2023.5.8/nlsr/build/vignette.rds |binary nlsr-2023.5.8/nlsr/inst/doc/FixedParameters.pdf |binary nlsr-2023.5.8/nlsr/inst/doc/Intro-to-nlsr.R | 18 ++++---- nlsr-2023.5.8/nlsr/inst/doc/Intro-to-nlsr.Rmd | 18 ++++---- nlsr-2023.5.8/nlsr/inst/doc/Intro-to-nlsr.pdf |binary nlsr-2023.5.8/nlsr/inst/doc/R-analytic-derivatives.pdf |binary nlsr-2023.5.8/nlsr/inst/doc/nlsr-derivs.R |only nlsr-2023.5.8/nlsr/inst/doc/nlsr-derivs.Rmd |only nlsr-2023.5.8/nlsr/inst/doc/nlsr-derivs.pdf |only nlsr-2023.5.8/nlsr/inst/doc/nlsr-devdoc.R |only nlsr-2023.5.8/nlsr/inst/doc/nlsr-devdoc.Rmd |only nlsr-2023.5.8/nlsr/inst/doc/nlsr-devdoc.pdf |only nlsr-2023.5.8/nlsr/man/pnls.Rd |only nlsr-2023.5.8/nlsr/man/pnlslm.Rd |only nlsr-2023.5.8/nlsr/tests/boundnlxb.R |only nlsr-2023.5.8/nlsr/vignettes/Intro-to-nlsr.Rmd | 18 ++++---- nlsr-2023.5.8/nlsr/vignettes/nlsr-derivs.Rmd |only nlsr-2023.5.8/nlsr/vignettes/nlsr-devdoc.Rmd |only 26 files changed, 84 insertions(+), 49 deletions(-)
More information about freecurrencyapi at CRAN
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Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', 'Snowflake', 'Spark', and 'SQLite'). Also includes support for
fetching data as 'Andromeda' objects. Uses either 'Java Database Connectivity' ('JDBC') or other 'DBI' drivers to connect to databases.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] ,
PostgreSQL Global Development Group [cph] ,
Oracle Inc. [cph] ,
Amazon Inc. [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 6.2.0 dated 2023-04-13 and 6.2.1 dated 2023-05-10
DESCRIPTION | 14 +++++++------- MD5 | 26 +++++++++++++------------- NEWS.md | 9 ++++++++- R/DBI.R | 28 +++++++++++++++++++++------- R/DatabaseConnector.R | 2 +- README.md | 2 +- inst/doc/Connecting.pdf |binary inst/doc/DbiAndDbplyr.pdf |binary inst/doc/Querying.pdf |binary man/DatabaseConnector-package.Rd | 2 +- man/downloadJdbcDrivers.Rd | 2 +- man/jdbcDrivers.Rd | 4 ++-- tests/testthat/dbplyrTestFunction.R | 30 ++++++++++++++++++++++++++++++ tests/testthat/test-dbplyr.R | 2 +- 14 files changed, 86 insertions(+), 35 deletions(-)
More information about DatabaseConnector at CRAN
Permanent link
Title: The Field of Cyclotomic Numbers
Description: The cyclotomic numbers are complex numbers that can be
thought of as the rational numbers extended with the roots of unity. They
are represented exactly, enabling exact computations. They contain the
Gaussian rationals (complex numbers with rational real and imaginary
parts) as well as the square roots of all rational numbers. They also
contain the sine and cosine of all rational multiples of pi. The
algorithms implemented in this package are taken from the 'Haskell'
package 'cyclotomic', whose algorithms are adapted from code by Martin
Schoenert and Thomas Breuer in the 'GAP' project
(<https://www.gap-system.org/>). Cyclotomic numbers have applications in
number theory, algebraic geometry, algebraic number theory, coding
theory, and in the theory of graphs and combinatorics. They have
connections to the theory of modular functions and modular curves.
Author: Stephane Laurent [aut, cre],
Scott N. Walck [cph]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between cyclotomic versions 1.0.0 dated 2023-04-18 and 1.1.0 dated 2023-05-10
DESCRIPTION | 11 ++++++----- MD5 | 17 +++++++++-------- NEWS.md | 7 +++++++ R/Cyclotomic.R | 31 ++++++++++++++++++++++--------- R/arithmetic.R | 38 +++++++++++++++++++++++++------------- R/mkCyclotomic.R | 30 +++++++++++++++++------------- R/sqrt.R | 27 ++++++++++++++++++++------- R/zzz.R |only README.md | 5 +++++ tests/testthat/test-cyclotomic.R | 25 +++++++++++++++++++++++++ 10 files changed, 136 insertions(+), 55 deletions(-)
Title: Convert Files to Parquet Format
Description: Collection of functions to get files in parquet format.
Parquet is a columnar storage file format <https://parquet.apache.org/>.
The files to convert can be of several formats
("csv", "RData", "rds", "RSQLite",
"json", "ndjson", "SAS", "SPSS"...).
Author: Damien Dotta [aut, cre],
Nicolas Chuche [aut]
Maintainer: Damien Dotta <damien.dotta@live.fr>
Diff between parquetize versions 0.5.5 dated 2023-03-28 and 0.5.6.1 dated 2023-05-10
parquetize-0.5.5/parquetize/inst/extdata/Species=setosa |only parquetize-0.5.5/parquetize/inst/extdata/Species=versicolor |only parquetize-0.5.5/parquetize/inst/extdata/Species=virginica |only parquetize-0.5.5/parquetize/tests/testthat/_snaps/csv_to_parquet.md |only parquetize-0.5.5/parquetize/tests/testthat/_snaps/download_extract.md |only parquetize-0.5.5/parquetize/tests/testthat/_snaps/json_to_parquet.md |only parquetize-0.5.5/parquetize/tests/testthat/_snaps/rds_to_parquet.md |only parquetize-0.5.5/parquetize/tests/testthat/_snaps/sqlite_to_parquet.md |only parquetize-0.5.5/parquetize/tests/testthat/_snaps/table_to_parquet.md |only parquetize-0.5.5/parquetize/tests/testthat/_snaps/utilities.md |only parquetize-0.5.6.1/parquetize/DESCRIPTION | 10 parquetize-0.5.6.1/parquetize/MD5 | 110 ++-- parquetize-0.5.6.1/parquetize/NAMESPACE | 19 parquetize-0.5.6.1/parquetize/NEWS.md | 60 ++ parquetize-0.5.6.1/parquetize/R/check_parquet.R |only parquetize-0.5.6.1/parquetize/R/csv_to_parquet.R | 102 +-- parquetize-0.5.6.1/parquetize/R/dbi_to_parquet.R |only parquetize-0.5.6.1/parquetize/R/download_extract.R | 11 parquetize-0.5.6.1/parquetize/R/fst_to_parquet.R |only parquetize-0.5.6.1/parquetize/R/get_partitions.R |only parquetize-0.5.6.1/parquetize/R/json_to_parquet.R | 49 - parquetize-0.5.6.1/parquetize/R/package-parquetize.R |only parquetize-0.5.6.1/parquetize/R/parquetize_example.R | 14 parquetize-0.5.6.1/parquetize/R/rbind_parquet.R | 13 parquetize-0.5.6.1/parquetize/R/rds_to_parquet.R | 49 - parquetize-0.5.6.1/parquetize/R/sqlite_to_parquet.R | 59 -- parquetize-0.5.6.1/parquetize/R/table_to_parquet.R | 225 ++++---- parquetize-0.5.6.1/parquetize/R/testthat-helpers.R |only parquetize-0.5.6.1/parquetize/R/utilities.R | 98 +-- parquetize-0.5.6.1/parquetize/R/write_parquet_at_once.R |only parquetize-0.5.6.1/parquetize/R/write_parquet_by_chunk.R |only parquetize-0.5.6.1/parquetize/README.md | 9 parquetize-0.5.6.1/parquetize/inst/doc/aa-conversions.R | 30 - parquetize-0.5.6.1/parquetize/inst/doc/aa-conversions.Rmd | 30 - parquetize-0.5.6.1/parquetize/inst/doc/aa-conversions.html | 52 + parquetize-0.5.6.1/parquetize/inst/extdata/iris.fst |only parquetize-0.5.6.1/parquetize/inst/extdata/iris_dataset |only parquetize-0.5.6.1/parquetize/inst/extdata/multifile.zip |only parquetize-0.5.6.1/parquetize/man/check_parquet.Rd |only parquetize-0.5.6.1/parquetize/man/csv_to_parquet.Rd | 54 - parquetize-0.5.6.1/parquetize/man/dbi_to_parquet.Rd |only parquetize-0.5.6.1/parquetize/man/download_extract.Rd | 6 parquetize-0.5.6.1/parquetize/man/expect_missing_argument.Rd |only parquetize-0.5.6.1/parquetize/man/expect_parquet.Rd |only parquetize-0.5.6.1/parquetize/man/figures/Insee_example_csv.gif |binary parquetize-0.5.6.1/parquetize/man/fst_to_parquet.Rd |only parquetize-0.5.6.1/parquetize/man/get_partitions.Rd |only parquetize-0.5.6.1/parquetize/man/json_to_parquet.Rd | 127 ++-- parquetize-0.5.6.1/parquetize/man/parquetize-package.Rd |only parquetize-0.5.6.1/parquetize/man/parquetize_example.Rd | 3 parquetize-0.5.6.1/parquetize/man/rbind_parquet.Rd | 114 ++-- parquetize-0.5.6.1/parquetize/man/rds_to_parquet.Rd | 116 ++-- parquetize-0.5.6.1/parquetize/man/sqlite_to_parquet.Rd | 135 ++-- parquetize-0.5.6.1/parquetize/man/table_to_parquet.Rd | 97 +-- parquetize-0.5.6.1/parquetize/man/write_parquet_at_once.Rd |only parquetize-0.5.6.1/parquetize/man/write_parquet_by_chunk.Rd |only parquetize-0.5.6.1/parquetize/tests/testthat/_snaps/check_parquet.md |only parquetize-0.5.6.1/parquetize/tests/testthat/test-check_parquet.R |only parquetize-0.5.6.1/parquetize/tests/testthat/test-csv_to_parquet.R | 118 ++-- parquetize-0.5.6.1/parquetize/tests/testthat/test-dbi_to_parquet.R |only parquetize-0.5.6.1/parquetize/tests/testthat/test-download_extract.R | 25 parquetize-0.5.6.1/parquetize/tests/testthat/test-fst_to_parquet.R |only parquetize-0.5.6.1/parquetize/tests/testthat/test-get_partitions.R |only parquetize-0.5.6.1/parquetize/tests/testthat/test-json_to_parquet.R | 86 +-- parquetize-0.5.6.1/parquetize/tests/testthat/test-parquetize_example.R | 19 parquetize-0.5.6.1/parquetize/tests/testthat/test-rbind_parquet.R | 16 parquetize-0.5.6.1/parquetize/tests/testthat/test-rds_to_parquet.R | 45 + parquetize-0.5.6.1/parquetize/tests/testthat/test-sqlite_to_parquet.R | 65 +- parquetize-0.5.6.1/parquetize/tests/testthat/test-table_to_parquet.R | 275 +++------- parquetize-0.5.6.1/parquetize/tests/testthat/test-testthat-helpers.R |only parquetize-0.5.6.1/parquetize/tests/testthat/test-utilities.R | 46 - parquetize-0.5.6.1/parquetize/tests/testthat/test-write_parquet_at_once.R |only parquetize-0.5.6.1/parquetize/tests/testthat/test-write_parquet_by_chunk.R |only parquetize-0.5.6.1/parquetize/vignettes/aa-conversions.Rmd | 30 - 74 files changed, 1184 insertions(+), 1133 deletions(-)
Title: Create a Shiny Date-Range Input
Description: A Shiny Input for date-ranges, which pops up two calendars for selecting dates, times, or predefined ranges like "Last 30 Days". It wraps the JavaScript library 'daterangepicker' which is available at <https://www.daterangepicker.com>.
Author: Sebastian Gatscha [aut, cre]
Maintainer: Sebastian Gatscha <sebastian_gatscha@gmx.at>
Diff between daterangepicker versions 0.1.0 dated 2020-03-20 and 0.2.0 dated 2023-05-10
daterangepicker-0.1.0/daterangepicker/README.md |only daterangepicker-0.2.0/daterangepicker/DESCRIPTION | 13 daterangepicker-0.2.0/daterangepicker/MD5 | 33 daterangepicker-0.2.0/daterangepicker/NAMESPACE | 26 daterangepicker-0.2.0/daterangepicker/R/daterangepicker.R | 208 daterangepicker-0.2.0/daterangepicker/R/onLoad.R | 7 daterangepicker-0.2.0/daterangepicker/R/utils.R | 36 daterangepicker-0.2.0/daterangepicker/inst/examples/advanced.R | 33 daterangepicker-0.2.0/daterangepicker/inst/examples/basic.R | 2 daterangepicker-0.2.0/daterangepicker/inst/examples/updates.R |only daterangepicker-0.2.0/daterangepicker/inst/htmlwidgets/daterangepicker-bindings.js | 98 daterangepicker-0.2.0/daterangepicker/inst/htmlwidgets/daterangepicker-bindings.min.js |only daterangepicker-0.2.0/daterangepicker/inst/htmlwidgets/daterangepicker/daterangepicker.min.css |only daterangepicker-0.2.0/daterangepicker/inst/htmlwidgets/moment/moment.locales.js |only daterangepicker-0.2.0/daterangepicker/inst/htmlwidgets/moment/moment.locales.min.js |14766 ---------- daterangepicker-0.2.0/daterangepicker/man/checkRanges.Rd | 4 daterangepicker-0.2.0/daterangepicker/man/daterangepicker.Rd | 234 daterangepicker-0.2.0/daterangepicker/man/daterangepickerOptions.Rd | 262 daterangepicker-0.2.0/daterangepicker/man/updateDaterangepicker.Rd | 117 daterangepicker-0.2.0/daterangepicker/tests/testthat/test-daterangepicker.R | 207 20 files changed, 760 insertions(+), 15286 deletions(-)
More information about daterangepicker at CRAN
Permanent link
Title: R Graphics Devices for 'Office' Vector Graphics Output
Description: Vector Graphics devices for 'Microsoft PowerPoint' and
'Microsoft Excel'. Functions extending package 'officer' are provided to
embed 'DrawingML' graphics into 'Microsoft PowerPoint' presentations and
'Microsoft Excel' workbooks.
Author: David Gohel [aut, cre],
ArData [cph],
Bob Rudis [ctb] ,
Francois Brunetti [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.3.2 dated 2023-01-07 and 0.3.3 dated 2023-05-10
DESCRIPTION | 14 ++++++++------ MD5 | 8 ++++---- NEWS.md | 7 +++++++ R/ph_with_vg.R | 4 ---- src/Makevars | 2 -- 5 files changed, 19 insertions(+), 16 deletions(-)
Title: Code-Logics to Handle Ontologies
Description: Provides tools to build and work with an ontology of linked (open)
data in a tidy workflow. It is inspired by the Food and Agrilculture
Organizations (FAO) caliper platform
<https://www.fao.org/statistics/caliper/web/> and
makes use of the Simple Knowledge Organisation System (SKOS).
Author: Steffen Ehrmann [aut, cre] ,
Arne Ruemmler [aut, ctb] ,
Carsten Meyer [ctb]
Maintainer: Steffen Ehrmann <steffen.ehrmann@posteo.de>
Diff between ontologics versions 0.6.5 dated 2023-01-31 and 0.7.0 dated 2023-05-10
DESCRIPTION | 6 MD5 | 100 - NAMESPACE | 8 NEWS.md | 8 R/1onto.R | 505 +++---- R/edit_matches.R | 736 +++++----- R/export_as_rdf.R | 902 ++++++------ R/get_class.R | 183 +- R/get_concept.R | 368 +---- R/get_source.R | 154 +- R/imports.R | 30 R/load_ontology.R | 70 - R/makeTreeMap.R | 132 - R/make_tree.R | 119 + R/new_class.R | 184 +- R/new_concept.R | 513 +++---- R/new_mapping.R | 589 ++++---- R/new_source.R | 246 +-- R/start_ontology.R | 180 +- README.md | 137 + build/vignette.rds |binary inst/doc/conversion_to_rdf.R | 36 inst/doc/conversion_to_rdf.Rmd | 2 inst/doc/conversion_to_rdf.html | 1273 +++++++++--------- inst/doc/create_an_ontology.R | 188 +- inst/doc/create_an_ontology.Rmd | 274 +-- inst/doc/create_an_ontology.html | 1951 ++++++++++++++-------------- inst/doc/map_new_concepts.R | 185 +- inst/doc/map_new_concepts.Rmd | 257 +-- inst/doc/map_new_concepts.html | 1562 ++++++++++------------ inst/doc/ontology_database_description.Rmd | 220 +-- inst/doc/ontology_database_description.html | 1006 +++++++------- man/edit_matches.Rd | 131 - man/export_as_rdf.Rd | 66 man/figures/logo.svg | 744 +++++----- man/get_class.Rd | 94 - man/get_concept.Rd | 108 - man/get_source.Rd | 80 - man/make_tree.Rd | 39 man/new_class.Rd | 68 man/new_concept.Rd | 15 man/new_mapping.Rd | 188 +- man/new_source.Rd | 162 +- man/onto-class.Rd | 40 man/pipe.Rd | 40 man/show-onto-method.Rd | 28 vignettes/conversion_to_rdf.Rmd | 2 vignettes/create_an_ontology.Rmd | 274 +-- vignettes/map_new_concepts.Rmd | 257 +-- vignettes/ontology_database_description.Rmd | 220 +-- vignettes/skos.rdf | 936 ++++++------- 51 files changed, 7683 insertions(+), 7933 deletions(-)
Title: General-Purpose Unconstrained Non-Linear Optimization
Description: An algorithm for general-purpose unconstrained non-linear optimization.
The algorithm is of quasi-Newton type with BFGS updating of the inverse
Hessian and soft line search with a trust region type monitoring of the
input to the line search algorithm. The interface of 'ucminf' is
designed for easy interchange with 'optim'.
Author: Hans Bruun Nielsen and Stig Bousgaard Mortensen
Maintainer: Stig Bousgaard Mortensen <stigbm@gmail.com>
Diff between ucminf versions 1.1-4.1 dated 2022-09-29 and 1.1-4.2 dated 2023-05-10
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NAMESPACE | 2 +- R/ucminf.R | 2 +- src/init.c |only src/interface.c | 2 +- 6 files changed, 11 insertions(+), 10 deletions(-)
Title: Political Science Computational Laboratory
Description: Bayesian analysis of item-response theory (IRT) models,
roll call analysis; computing highest density regions; maximum
likelihood estimation of zero-inflated and hurdle models for count
data; goodness-of-fit measures for GLMs; data sets used
in writing and teaching at the Political Science
Computational Laboratory; seats-votes curves.
Author: Simon Jackman, with contributions from
Alex Tahk, Achim Zeileis, Christina Maimone, Jim Fearon and Zoe Meers
Maintainer: Simon Jackman <simon.jackman@sydney.edu.au>
Diff between pscl versions 1.5.5 dated 2020-03-07 and 1.5.5.1 dated 2023-05-10
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/util.c | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Jack, Zonal, and Schur Polynomials
Description: Symbolic calculation and evaluation of the Jack polynomials,
zonal polynomials, and Schur polynomials. Mainly based on Demmel &
Koev's paper (2006) <doi:10.1090/S0025-5718-05-01780-1>. Zonal
polynomials and Schur polynomials are particular cases of Jack
polynomials. Zonal polynomials appear in random matrix theory. Schur
polynomials appear in the field of combinatorics.
Author: Stephane Laurent
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between jack versions 5.0.1 dated 2023-01-30 and 5.1.0 dated 2023-05-10
DESCRIPTION | 8 - MD5 | 35 ++-- NAMESPACE | 4 NEWS.md | 8 - R/CPP.R | 109 +++++++++++++- R/RcppExports.R | 12 + README.md | 50 ++++-- man/JackCPP.Rd |only man/SchurCPP.Rd |only man/ZonalCPP.Rd |only man/ZonalQCPP.Rd |only man/ZonalQPolCPP.Rd | 4 src/RcppExports.cpp | 37 ++++ src/jack.cpp | 333 ------------------------------------------- src/jack.h |only src/jackEval.cpp |only src/polynomials.cpp |only src/shared.cpp |only src/utils.cpp |only tests/testthat/test-jack.R | 10 + tests/testthat/test-schur.R | 9 + tests/testthat/test-zonal.R | 9 + tests/testthat/test-zonalQ.R | 9 + 23 files changed, 271 insertions(+), 366 deletions(-)
Title: Enrichment Analysis Utilizing Active Subnetworks
Description: Enrichment analysis enables researchers to uncover mechanisms
underlying a phenotype. However, conventional methods for enrichment
analysis do not take into account protein-protein interaction information,
resulting in incomplete conclusions. pathfindR is a tool for enrichment
analysis utilizing active subnetworks. The main function identifies active
subnetworks in a protein-protein interaction network using a user-provided
list of genes and associated p values. It then performs enrichment analyses
on the identified subnetworks, identifying enriched terms (i.e. pathways or,
more broadly, gene sets) that possibly underlie the phenotype of interest.
pathfindR also offers functionalities to cluster the enriched terms and
identify representative terms in each cluster, to score the enriched terms
per sample and to visualize analysis results. The enrichment, clustering and
other methods implemented in pathfindR are described in detail in
Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R [...truncated...]
Author: Ege Ulgen [cre, cph] ,
Ozan Ozisik [aut]
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR versions 2.0.0 dated 2023-05-06 and 2.0.1 dated 2023-05-10
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 5 +++++ R/core.R | 7 ++++++- R/utility.R | 9 +++++---- inst/doc/comparing_results.html | 4 ++-- inst/doc/intro_vignette.html | 4 ++-- inst/doc/manual_execution.html | 4 ++-- inst/doc/non_hs_analysis.html | 4 ++-- inst/doc/obtain_data.html | 4 ++-- inst/doc/visualization_vignette.html | 4 ++-- man/create_HTML_report.Rd | 4 +++- tests/testthat/test-utility.R | 12 ++++-------- 13 files changed, 50 insertions(+), 41 deletions(-)
Title: Create and Evaluate NONMEM Models in a Project Context
Description: Systematically creates and modifies NONMEM(R) control streams. Harvests
NONMEM output, builds run logs, creates derivative data, generates diagnostics.
NONMEM (ICON Development Solutions <https://www.iconplc.com/>) is software for
nonlinear mixed effects modeling. See 'package?nonmemica'.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between nonmemica versions 1.0.0 dated 2023-02-07 and 1.0.1 dated 2023-05-10
nonmemica-1.0.0/nonmemica/inst/partab |only nonmemica-1.0.1/nonmemica/DESCRIPTION | 8 nonmemica-1.0.1/nonmemica/MD5 | 183 ++++++------- nonmemica-1.0.1/nonmemica/R/bootstrap.R | 10 nonmemica-1.0.1/nonmemica/R/definitions.R | 7 nonmemica-1.0.1/nonmemica/R/init.R | 54 ++- nonmemica-1.0.1/nonmemica/R/model.R | 84 +++-- nonmemica-1.0.1/nonmemica/R/nonmemica.R | 4 nonmemica-1.0.1/nonmemica/R/partab.R | 6 nonmemica-1.0.1/nonmemica/R/util.R | 10 nonmemica-1.0.1/nonmemica/R/xpath.R | 22 - nonmemica-1.0.1/nonmemica/build/vignette.rds |binary nonmemica-1.0.1/nonmemica/inst/doc/parameter-table.Rmd | 4 nonmemica-1.0.1/nonmemica/inst/doc/parameter-table.html | 17 - nonmemica-1.0.1/nonmemica/man/as.best.Rd | 25 - nonmemica-1.0.1/nonmemica/man/as.best.default.Rd |only nonmemica-1.0.1/nonmemica/man/as.bootstrap.Rd | 18 - nonmemica-1.0.1/nonmemica/man/as.bootstrap.bootstrap.Rd |only nonmemica-1.0.1/nonmemica/man/as.bootstrap.numeric.Rd | 1 nonmemica-1.0.1/nonmemica/man/as.character.init.Rd | 4 nonmemica-1.0.1/nonmemica/man/as.character.inits.Rd | 2 nonmemica-1.0.1/nonmemica/man/as.character.model.Rd | 4 nonmemica-1.0.1/nonmemica/man/as.character.problem.Rd | 4 nonmemica-1.0.1/nonmemica/man/as.init.Rd | 21 - nonmemica-1.0.1/nonmemica/man/as.init.init.Rd |only nonmemica-1.0.1/nonmemica/man/as.init.numeric.Rd | 5 nonmemica-1.0.1/nonmemica/man/as.inits.Rd | 21 - nonmemica-1.0.1/nonmemica/man/as.inits.list.Rd |only nonmemica-1.0.1/nonmemica/man/as.inits.numeric.Rd | 5 nonmemica-1.0.1/nonmemica/man/as.items.character.Rd | 4 nonmemica-1.0.1/nonmemica/man/as.matrices.Rd | 2 nonmemica-1.0.1/nonmemica/man/as.matrices.inits.Rd | 4 nonmemica-1.0.1/nonmemica/man/as.matrices.records.Rd | 4 nonmemica-1.0.1/nonmemica/man/as.model.Rd | 40 -- nonmemica-1.0.1/nonmemica/man/as.model.character.Rd |only nonmemica-1.0.1/nonmemica/man/as.model.numeric.Rd | 5 nonmemica-1.0.1/nonmemica/man/as.xml_document.Rd | 25 - nonmemica-1.0.1/nonmemica/man/as.xml_document.character.Rd |only nonmemica-1.0.1/nonmemica/man/as.xml_document.numeric.Rd | 7 nonmemica-1.0.1/nonmemica/man/comments.Rd | 64 ---- nonmemica-1.0.1/nonmemica/man/comments.inits.Rd |only nonmemica-1.0.1/nonmemica/man/comments.items.Rd |only nonmemica-1.0.1/nonmemica/man/comments.model.Rd |only nonmemica-1.0.1/nonmemica/man/definitions.Rd | 14 nonmemica-1.0.1/nonmemica/man/definitions.definitions.Rd |only nonmemica-1.0.1/nonmemica/man/definitions.numeric.Rd | 5 nonmemica-1.0.1/nonmemica/man/enclose.Rd | 1 nonmemica-1.0.1/nonmemica/man/fixed-set-.init.Rd | 1 nonmemica-1.0.1/nonmemica/man/fixed-set-.inits.Rd | 1 nonmemica-1.0.1/nonmemica/man/fixed-set-.model.Rd | 1 nonmemica-1.0.1/nonmemica/man/fixed-set.Rd | 1 nonmemica-1.0.1/nonmemica/man/fixed.Rd | 22 - nonmemica-1.0.1/nonmemica/man/fixed.init.Rd |only nonmemica-1.0.1/nonmemica/man/fixed.model.Rd | 5 nonmemica-1.0.1/nonmemica/man/format.init.Rd | 2 nonmemica-1.0.1/nonmemica/man/format.inits.Rd | 2 nonmemica-1.0.1/nonmemica/man/format.items.Rd | 2 nonmemica-1.0.1/nonmemica/man/format.model.Rd | 2 nonmemica-1.0.1/nonmemica/man/grapes-contains-grapes.Rd | 1 nonmemica-1.0.1/nonmemica/man/initDex.Rd | 2 nonmemica-1.0.1/nonmemica/man/initDex.model.Rd | 2 nonmemica-1.0.1/nonmemica/man/initSubscripts.Rd | 2 nonmemica-1.0.1/nonmemica/man/initSubscripts.model.Rd | 2 nonmemica-1.0.1/nonmemica/man/locf.Rd | 6 nonmemica-1.0.1/nonmemica/man/nonmemica.Rd | 4 nonmemica-1.0.1/nonmemica/man/ord.inits.Rd | 2 nonmemica-1.0.1/nonmemica/man/ord.items.Rd | 2 nonmemica-1.0.1/nonmemica/man/padded.Rd | 1 nonmemica-1.0.1/nonmemica/man/parens.Rd | 1 nonmemica-1.0.1/nonmemica/man/partab.Rd | 4 nonmemica-1.0.1/nonmemica/man/partab.numeric.Rd | 4 nonmemica-1.0.1/nonmemica/man/pool.Rd | 1 nonmemica-1.0.1/nonmemica/man/print.init.Rd | 2 nonmemica-1.0.1/nonmemica/man/print.inits.Rd | 2 nonmemica-1.0.1/nonmemica/man/print.items.Rd | 2 nonmemica-1.0.1/nonmemica/man/print.model.Rd | 2 nonmemica-1.0.1/nonmemica/man/read.model.Rd | 3 nonmemica-1.0.1/nonmemica/man/runhead.Rd | 1 nonmemica-1.0.1/nonmemica/man/sub-.inits.Rd | 2 nonmemica-1.0.1/nonmemica/man/sub-.model.Rd | 3 nonmemica-1.0.1/nonmemica/man/sub-sub-.model.Rd | 3 nonmemica-1.0.1/nonmemica/man/text2decimal.Rd | 1 nonmemica-1.0.1/nonmemica/man/tweak.init.Rd | 4 nonmemica-1.0.1/nonmemica/man/tweak.inits.Rd | 4 nonmemica-1.0.1/nonmemica/man/tweak.model.Rd | 4 nonmemica-1.0.1/nonmemica/man/updated.Rd | 2 nonmemica-1.0.1/nonmemica/man/updated.character.Rd | 2 nonmemica-1.0.1/nonmemica/man/updated.numeric.Rd | 4 nonmemica-1.0.1/nonmemica/man/write.model.Rd | 3 nonmemica-1.0.1/nonmemica/man/xpath.Rd | 39 -- nonmemica-1.0.1/nonmemica/man/xpath.default.Rd |only nonmemica-1.0.1/nonmemica/man/xpath.xml_document.Rd |only nonmemica-1.0.1/nonmemica/vignettes/parameter-table.Rmd | 4 93 files changed, 353 insertions(+), 501 deletions(-)
Title: Image Processing Library Based on 'CImg'
Description: Fast image processing for images in up to 4 dimensions (two spatial
dimensions, one time/depth dimension, one colour dimension). Provides most
traditional image processing tools (filtering, morphology, transformations,
etc.) as well as various functions for easily analysing image data using R. The
package wraps 'CImg', <http://cimg.eu>, a simple, modern C++ library for image
processing.
Author: Simon Barthelme [aut],
David Tschumperle [ctb],
Jan Wijffels [ctb],
Haz Edine Assemlal [ctb],
Shota Ochi [ctb],
Aaron Robotham [cre],
Rodrigo Tobar [ctb]
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between imager versions 0.42.19 dated 2023-03-25 and 0.45.2 dated 2023-05-10
imager-0.42.19/imager/man/cimg.use.openmp.Rd |only imager-0.42.19/imager/man/im2cimg.Rd |only imager-0.45.2/imager/DESCRIPTION | 29 imager-0.45.2/imager/MD5 | 342 +++--- imager-0.45.2/imager/NAMESPACE | 3 imager-0.45.2/imager/R/RcppExports.R | 24 imager-0.45.2/imager/R/basegraphics.R | 1 imager-0.45.2/imager/R/canny.R | 1 imager-0.45.2/imager/R/cimg_class.R | 37 imager-0.45.2/imager/R/conversions.R | 18 imager-0.45.2/imager/R/coordinates.R | 5 imager-0.45.2/imager/R/drawing.R | 4 imager-0.45.2/imager/R/filtering.R | 3 imager-0.45.2/imager/R/graphs.R | 2 imager-0.45.2/imager/R/hough.R | 3 imager-0.45.2/imager/R/imeval.R | 3 imager-0.45.2/imager/R/imgen.R | 3 imager-0.45.2/imager/R/imglist.R | 8 imager-0.45.2/imager/R/interactive.R | 2 imager-0.45.2/imager/R/interpolation.R | 1 imager-0.45.2/imager/R/loading.R | 6 imager-0.45.2/imager/R/pixset.R | 16 imager-0.45.2/imager/R/splitcombine.R | 12 imager-0.45.2/imager/R/stencils.R | 2 imager-0.45.2/imager/R/transformations.R | 1 imager-0.45.2/imager/R/utils.R | 51 - imager-0.45.2/imager/build/vignette.rds |binary imager-0.45.2/imager/cleanup | 2 imager-0.45.2/imager/inst/doc/gettingstarted.R | 5 imager-0.45.2/imager/inst/doc/gettingstarted.Rmd | 8 imager-0.45.2/imager/inst/doc/gettingstarted.html | 609 ++++++++---- imager-0.45.2/imager/inst/doc/pixsets.R | 5 imager-0.45.2/imager/inst/doc/pixsets.Rmd | 9 imager-0.45.2/imager/inst/doc/pixsets.html | 354 ++++-- imager-0.45.2/imager/man/FFT.Rd | 1 imager-0.45.2/imager/man/add.colour.Rd | 1 imager-0.45.2/imager/man/as.cimg.Rd | 1 imager-0.45.2/imager/man/as.cimg.array.Rd | 1 imager-0.45.2/imager/man/as.cimg.data.frame.Rd | 1 imager-0.45.2/imager/man/as.cimg.function.Rd | 1 imager-0.45.2/imager/man/as.cimg.im.Rd |only imager-0.45.2/imager/man/as.cimg.raster.Rd | 1 imager-0.45.2/imager/man/as.data.frame.cimg.Rd | 1 imager-0.45.2/imager/man/as.data.frame.imlist.Rd | 1 imager-0.45.2/imager/man/as.data.frame.pixset.Rd | 1 imager-0.45.2/imager/man/as.igraph.cimg.Rd | 1 imager-0.45.2/imager/man/as.igraph.pixset.Rd | 1 imager-0.45.2/imager/man/as.imlist.Rd | 1 imager-0.45.2/imager/man/as.pixset.Rd | 1 imager-0.45.2/imager/man/as.raster.cimg.Rd | 1 imager-0.45.2/imager/man/at.Rd | 3 imager-0.45.2/imager/man/autocrop.Rd | 1 imager-0.45.2/imager/man/bbox.Rd | 1 imager-0.45.2/imager/man/blur_anisotropic.Rd | 1 imager-0.45.2/imager/man/boundary.Rd | 1 imager-0.45.2/imager/man/boxblur.Rd | 1 imager-0.45.2/imager/man/boxblur_xy.Rd | 1 imager-0.45.2/imager/man/bucketfill.Rd | 1 imager-0.45.2/imager/man/cannyEdges.Rd | 1 imager-0.45.2/imager/man/capture.plot.Rd | 1 imager-0.45.2/imager/man/center.stencil.Rd | 1 imager-0.45.2/imager/man/channels.Rd | 1 imager-0.45.2/imager/man/ci.Rd | 1 imager-0.45.2/imager/man/cimg.Rd | 1 imager-0.45.2/imager/man/cimg.extract.Rd | 1 imager-0.45.2/imager/man/cimg.openmp.Rd |only imager-0.45.2/imager/man/clean.Rd | 1 imager-0.45.2/imager/man/colorise.Rd | 1 imager-0.45.2/imager/man/common_pixsets.Rd | 1 imager-0.45.2/imager/man/contours.Rd | 1 imager-0.45.2/imager/man/coord.index.Rd | 1 imager-0.45.2/imager/man/correlate.Rd | 1 imager-0.45.2/imager/man/crop.borders.Rd | 1 imager-0.45.2/imager/man/deriche.Rd | 1 imager-0.45.2/imager/man/display.cimg.Rd | 1 imager-0.45.2/imager/man/display.list.Rd | 1 imager-0.45.2/imager/man/distance_transform.Rd | 1 imager-0.45.2/imager/man/draw_circle.Rd | 1 imager-0.45.2/imager/man/draw_rect.Rd | 1 imager-0.45.2/imager/man/draw_text.Rd | 1 imager-0.45.2/imager/man/erode.Rd | 1 imager-0.45.2/imager/man/extract_patches.Rd | 1 imager-0.45.2/imager/man/flatten.alpha.Rd | 1 imager-0.45.2/imager/man/get.locations.Rd | 1 imager-0.45.2/imager/man/get.stencil.Rd | 1 imager-0.45.2/imager/man/grab.Rd | 1 imager-0.45.2/imager/man/grayscale.Rd | 1 imager-0.45.2/imager/man/grow.Rd | 2 imager-0.45.2/imager/man/gsdim.Rd | 1 imager-0.45.2/imager/man/haar.Rd | 1 imager-0.45.2/imager/man/highlight.Rd | 1 imager-0.45.2/imager/man/hough_circle.Rd | 1 imager-0.45.2/imager/man/hough_line.Rd | 1 imager-0.45.2/imager/man/idply.Rd | 1 imager-0.45.2/imager/man/iiply.Rd | 1 imager-0.45.2/imager/man/ilply.Rd | 1 imager-0.45.2/imager/man/imager.Rd | 2 imager-0.45.2/imager/man/imager.combine.Rd | 9 imager-0.45.2/imager/man/imager.replace.Rd | 1 imager-0.45.2/imager/man/imager.subset.Rd | 1 imager-0.45.2/imager/man/imappend.Rd | 1 imager-0.45.2/imager/man/imchange.Rd | 1 imager-0.45.2/imager/man/imcoord.Rd | 1 imager-0.45.2/imager/man/imdirac.Rd | 1 imager-0.45.2/imager/man/imdraw.Rd | 1 imager-0.45.2/imager/man/imeval.Rd | 2 imager-0.45.2/imager/man/imfill.Rd | 1 imager-0.45.2/imager/man/imgradient.Rd | 1 imager-0.45.2/imager/man/imhessian.Rd | 1 imager-0.45.2/imager/man/iminfo.Rd | 1 imager-0.45.2/imager/man/imlap.Rd | 1 imager-0.45.2/imager/man/imlist.Rd | 1 imager-0.45.2/imager/man/imnoise.Rd | 1 imager-0.45.2/imager/man/implot.Rd | 1 imager-0.45.2/imager/man/imrep.Rd | 1 imager-0.45.2/imager/man/imrotate.Rd | 1 imager-0.45.2/imager/man/imsharpen.Rd | 1 imager-0.45.2/imager/man/imshift.Rd | 1 imager-0.45.2/imager/man/imsplit.Rd | 1 imager-0.45.2/imager/man/imsub.Rd | 1 imager-0.45.2/imager/man/imwarp.Rd | 1 imager-0.45.2/imager/man/index.coord.Rd | 1 imager-0.45.2/imager/man/inpaint.Rd | 1 imager-0.45.2/imager/man/interact.Rd | 1 imager-0.45.2/imager/man/interp.Rd | 1 imager-0.45.2/imager/man/isoblur.Rd | 1 imager-0.45.2/imager/man/label.Rd | 1 imager-0.45.2/imager/man/liply.Rd | 1 imager-0.45.2/imager/man/load.dir.Rd | 1 imager-0.45.2/imager/man/load.example.Rd | 1 imager-0.45.2/imager/man/load.image.Rd | 1 imager-0.45.2/imager/man/load.video.Rd | 1 imager-0.45.2/imager/man/make.video.Rd | 1 imager-0.45.2/imager/man/map_il.Rd | 1 imager-0.45.2/imager/man/medianblur.Rd | 1 imager-0.45.2/imager/man/mirror.Rd | 1 imager-0.45.2/imager/man/nfline.Rd | 1 imager-0.45.2/imager/man/pad.Rd | 1 imager-0.45.2/imager/man/patch_summary_cimg.Rd | 1 imager-0.45.2/imager/man/patchstat.Rd | 1 imager-0.45.2/imager/man/periodic.part.Rd | 1 imager-0.45.2/imager/man/permute_axes.Rd | 1 imager-0.45.2/imager/man/pixel.grid.Rd | 1 imager-0.45.2/imager/man/pixset.Rd | 1 imager-0.45.2/imager/man/plot.cimg.Rd | 1 imager-0.45.2/imager/man/plot.imlist.Rd | 1 imager-0.45.2/imager/man/px.flood.Rd | 1 imager-0.45.2/imager/man/px.na.Rd | 1 imager-0.45.2/imager/man/px.remove_outer.Rd | 1 imager-0.45.2/imager/man/renorm.Rd | 1 imager-0.45.2/imager/man/resize_uniform.Rd | 1 imager-0.45.2/imager/man/rm.alpha.Rd | 1 imager-0.45.2/imager/man/rotate_xy.Rd | 1 imager-0.45.2/imager/man/save.image.Rd | 1 imager-0.45.2/imager/man/split_connected.Rd | 1 imager-0.45.2/imager/man/squeeze.Rd | 1 imager-0.45.2/imager/man/threshold.Rd | 1 imager-0.45.2/imager/man/vanvliet.Rd | 1 imager-0.45.2/imager/man/warp.Rd | 1 imager-0.45.2/imager/man/watershed.Rd | 1 imager-0.45.2/imager/man/where.Rd | 1 imager-0.45.2/imager/src/Makevars.in | 5 imager-0.45.2/imager/src/RcppExports.cpp | 11 imager-0.45.2/imager/src/filtering.cpp | 9 imager-0.45.2/imager/src/morphology.cpp | 4 imager-0.45.2/imager/src/reductions.cpp | 64 + imager-0.45.2/imager/src/transformations.cpp | 5 imager-0.45.2/imager/src/utils.cpp | 14 imager-0.45.2/imager/tests/testthat/test_cpp_api.R | 2 imager-0.45.2/imager/tests/testthat/test_load_save_images.R | 2 imager-0.45.2/imager/tests/testthat/test_load_save_videos.R | 2 imager-0.45.2/imager/tests/testthat/test_reductions.R | 2 imager-0.45.2/imager/vignettes/gettingstarted.Rmd | 8 imager-0.45.2/imager/vignettes/pixsets.Rmd | 9 174 files changed, 1307 insertions(+), 537 deletions(-)
Title: Helper Functions for Bayesian Analyses
Description: Functions to 'numericise' 'R' objects (coerce to numeric
objects), summarise 'MCMC' (Monte Carlo Markov Chain) samples and
calculate deviance residuals as well as 'R' translations of some
'BUGS' (Bayesian Using Gibbs Sampling), 'JAGS' (Just Another Gibbs
Sampler), 'STAN' and 'TMB' (Template Model Builder) functions.
Author: Joe Thorley [aut, cre] ,
Nicole Hill [aut] ,
Kirill Mueller [ctb] ,
Nadine Hussein [ctb] ,
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between extras versions 0.6.0 dated 2023-04-28 and 0.6.1 dated 2023-05-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test-dev.R | 8 +++++++- 4 files changed, 17 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-12 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-09 0.2.4
2013-03-12 0.2.2
2012-07-23 0.2
2012-07-16 0.1
Title: Statistical Analysis of Contingency Tables
Description: Provides functions to perform statistical inference of data organized in contingency tables. This package is a companion to the "Statistical Analysis of Contingency Tables" book by Fagerland et al. <ISBN 9781466588172>.
Author: Morten Wang Fagerland [aut],
Stian Lydersen [ctb],
Petter Laake [ctb],
Waldir Leoncio [cre],
Ole Christian Lingjaerde [trl]
Maintainer: Waldir Leoncio <w.l.netto@medisin.uio.no>
Diff between contingencytables versions 1.0.4 dated 2022-12-12 and 2.0.0 dated 2023-05-10
DESCRIPTION | 10 MD5 | 716 ++++++------ NAMESPACE | 30 NEWS.md |only R/Adjusted_inv_sinh_CI_OR_2x2.R | 50 R/Adjusted_inv_sinh_CI_ratio_2x2.R | 49 R/Adjusted_log_CI_2x2.R | 31 R/AgrestiCaffo_CI_2x2.R | 36 R/AgrestiCoull_CI_1x2.R | 40 R/Arcsine_CI_1x2.R | 44 R/BaptistaPike_exact_conditional_CI_2x2.R | 46 R/BaptistaPike_midP_CI_2x2.R | 40 R/Bhapkar_test_paired_cxc.R | 52 R/Blaker_exact_CI_1x2.R | 40 R/Blaker_exact_test_1x2.R | 35 R/Blaker_midP_CI_1x2.R | 41 R/Blaker_midP_test_1x2.R | 36 R/BonettPrice_hybrid_Wilson_score_CI_CC_paired_2x2.R | 38 R/BonettPrice_hybrid_Wilson_score_CI_paired_2x2.R | 35 R/Bonferroni_type_CIs_paired_cxc.R | 35 R/Bonferroni_type_CIs_rxc.R | 27 R/Brant_test_2xc.R | 35 R/BreslowDay_homogeneity_test_stratified_2x2.R | 48 R/Chacko_test_1xc.R | 32 R/ClopperPearson_exact_CI_1x2.R | 42 R/ClopperPearson_exact_CI_1x2_beta_version.R | 43 R/ClopperPearson_midP_CI_1x2.R | 42 R/CochranArmitage_CI_rx2.R | 36 R/CochranArmitage_MH_tests_rx2.R | 38 R/CochranArmitage_exact_cond_midP_tests_rx2.R | 31 R/CochranMantelHaenszel_test_stratified_2x2.R | 47 R/Cochran_Q_test_stratified_2x2.R | 54 R/Cornfield_exact_conditional_CI_2x2.R | 36 R/Cornfield_midP_CI_2x2.R | 36 R/Cumulative_models_for_2xc.R | 76 - R/Cumulative_models_for_rxc.R | 70 - R/Exact_binomial_test_1x2.R | 33 R/Exact_cond_midP_linear_rank_tests_2xc.R | 29 R/Exact_cond_midP_tests_rxc.R | 52 R/Exact_cond_midP_unspecific_ordering_rx2.R | 27 R/Exact_multinomial_test_1xc.R | 61 - R/Exact_unconditional_test_2x2.R | 51 R/FisherFreemanHalton_asymptotic_test_rxc.R | 31 R/Fisher_exact_test_2x2.R | 51 R/Fisher_midP_test_2x2.R | 49 R/FleissEveritt_test_paired_cxc.R | 41 R/FleissLevinPaik_test_paired_cxc.R | 41 R/Gart_adjusted_logit_CI_2x2.R | 31 R/Gold_Wald_CIs_1xc.R | 30 R/Goodman_Wald_CIs_1xc.R | 30 R/Goodman_Wald_CIs_for_diffs_1xc.R | 58 R/Goodman_Wilson_score_CIs_1xc.R | 33 R/Independence_smoothed_logit_CI_2x2.R | 33 R/Inv_sinh_CI_OR_2x2.R | 33 R/Inv_sinh_CI_ratio_2x2.R | 29 R/InverseVariance_estimate_stratified_2x2.R | 42 R/Jeffreys_CI_1x2.R | 35 R/JonckheereTerpstra_test_rxc.R | 42 R/Katz_log_CI_2x2.R | 35 R/Kendalls_tau_b_rxc.R | 48 R/Kendalls_tau_b_rxc_bca.R | 50 R/Koopman_asymptotic_score_CI_2x2.R | 30 R/KruskalWallis_asymptotic_test_rxc.R | 45 R/LR_CI_1x2.R | 35 R/LR_test_1x2.R | 40 R/LR_test_1xc.R | 29 R/LR_test_2x2.R | 37 R/ML_estimates_and_CIs_stratified_2x2.R | 46 R/MOVER_R_Wilson_CI_OR_2x2.R | 46 R/MOVER_R_Wilson_CI_ratio_2x2.R | 39 R/MOVER_Wilson_score_CI_paired_2x2.R | 35 R/MantelHaenszel_estimate_stratified_2x2.R | 42 R/MantelHaenszel_test_2xc.R | 26 R/McNemarBowker_test_paired_cxc.R | 28 R/McNemar_asymptotic_test_CC_paired_2x2.R | 63 - R/McNemar_asymptotic_test_paired_2x2.R | 59 R/McNemar_exact_cond_test_paired_2x2.R | 35 R/McNemar_exact_unconditional_test_paired_2x2.R | 44 R/McNemar_midP_test_paired_2x2.R | 40 R/Mee_asymptotic_score_CI_2x2.R | 29 R/MidP_binomial_test_1x2.R | 29 R/MidP_multinomial_test_1xc.R | 112 - R/MiettinenNurminen_asymptotic_score_CI_OR_2x2.R | 32 R/MiettinenNurminen_asymptotic_score_CI_difference_2x2.R | 28 R/MiettinenNurminen_asymptotic_score_CI_ratio_2x2.R | 26 R/Newcombe_hybrid_score_CI_2x2.R | 41 R/Newcombe_square_and_add_CI_paired_2x2.R | 34 R/Pearson_LR_homogeneity_test_stratified_2x2.R | 38 R/Pearson_LR_test_common_effect_stratified_2x2.R | 38 R/Pearson_LR_tests_cum_OR_2xc.R | 19 R/Pearson_LR_tests_rxc.R | 55 R/Pearson_LR_tests_unspecific_ordering_rx2.R | 29 R/Pearson_chi_squared_test_1xc.R | 26 R/Pearson_chi_squared_test_2x2.R | 32 R/Pearson_chi_squared_test_CC_2x2.R | 33 R/Pearson_correlation_coefficient_rxc.R | 51 R/Pearson_correlation_coefficient_rxc_bca.R | 54 R/Pearson_residuals_rxc.R | 47 R/Peto_OR_estimate_stratified_2x2.R | 38 R/Peto_homogeneity_test_stratified_2x2.R | 36 R/PriceBonett_approximate_Bayes_CI_2x2.R | 32 R/QuesenberryHurst_Wilson_score_CIs_1xc.R | 33 R/RBG_test_and_CI_stratified_2x2.R | 45 R/Scheffe_type_CIs_paired_cxc.R | 30 R/Scheffe_type_CIs_rxc.R | 27 R/Score_test_1x2.R | 33 R/Score_test_CC_1x2.R | 36 R/Score_test_and_CI_marginal_mean_scores_paired_cxc.R | 36 R/Score_test_for_effect_in_the_probit_model_2xc.R | 28 R/Spearman_correlation_coefficient_rxc.R | 49 R/Spearman_correlation_coefficient_rxc_bca.R | 51 R/Stuart_test_paired_cxc.R | 51 R/Tang_asymptotic_score_CI_paired_2x2.R | 36 R/Tango_asymptotic_score_CI_paired_2x2.R | 27 R/Transformed_Blaker_exact_CI_paired_2x2.R | 37 R/Transformed_Clopper_Pearson_exact_CI_paired_2x2.R | 49 R/Transformed_Clopper_Pearson_midP_CI_paired_2x2.R | 48 R/Transformed_Wilson_score_CI_paired_2x2.R | 43 R/Trend_estimate_CI_tests_rx2.R | 62 - R/Uncorrected_asymptotic_score_CI_2x2.R | 40 R/Wald_CI_1x2.R | 38 R/Wald_CI_2x2.R | 32 R/Wald_CI_AgrestiMin_paired_2x2.R | 47 R/Wald_CI_BonettPrice_paired_2x2.R | 44 R/Wald_CI_CC_1x2.R | 35 R/Wald_CI_CC_2x2.R | 34 R/Wald_CI_OR_Laplace_paired_2x2.R | 42 R/Wald_CI_OR_paired_2x2.R | 33 R/Wald_CI_diff_CC_paired_2x2.R | 41 R/Wald_CI_diff_paired_2x2.R | 39 R/Wald_CI_ratio_paired_2x2.R | 36 R/Wald_test_1x2.R | 27 R/Wald_test_CC_1x2.R | 37 R/Wald_test_and_CI_common_diff_stratified_2x2.R | 69 - R/Wald_test_and_CI_common_ratio_stratified_2x2.R | 59 R/Wald_test_and_CI_marginal_mean_ranks_paired_cxc.R | 83 - R/Wald_test_and_CI_marginal_mean_scores_paired_cxc.R | 48 R/Wilson_score_CI_1x2.R | 39 R/Wilson_score_CI_CC_1x2.R | 39 R/Woolf_logit_CI_2x2.R | 28 R/Woolf_test_and_CI_stratified_2x2.R | 48 R/Z_unpooled_test_2x2.R | 32 R/all.tables.R |only R/chapters.R | 2 R/contingencytables-class.R |only R/contingencytables-package.R | 2 R/datasets.R |only R/gamma_coefficient_rxc.R | 51 R/gamma_coefficient_rxc_bca.R | 52 R/generics.R | 72 - R/linear_by_linear_test_rxc.R | 48 R/misc.R | 10 R/print_functions.R |only R/stratified_2x2_tables.R | 347 ++--- R/the_1x2_table_CIs.R | 64 - R/the_1x2_table_tests.R | 34 R/the_1xc_table_CIs.R | 17 R/the_1xc_table_tests.R | 19 R/the_2x2_table_CIs_OR.R | 83 - R/the_2x2_table_CIs_difference.R | 49 R/the_2x2_table_CIs_ratio.R | 57 R/the_2x2_table_tests.R | 83 - R/the_2xc_table.R | 174 +- R/the_paired_2x2_table_CIs_OR.R | 48 R/the_paired_2x2_table_CIs_difference.R | 51 R/the_paired_2x2_table_CIs_ratio.R | 49 R/the_paired_2x2_table_tests.R | 67 - R/the_paired_cxc_table_nominal.R | 58 R/the_paired_cxc_table_ordinal.R | 74 - R/the_rx2_table.R | 121 -- R/the_rxc_table.R | 211 +-- R/validateArguments.R |only man/Adjusted_inv_sinh_CI_OR_2x2.Rd | 28 man/Adjusted_inv_sinh_CI_ratio_2x2.Rd | 23 man/Adjusted_log_CI_2x2.Rd | 16 man/AgrestiCaffo_CI_2x2.Rd | 14 man/AgrestiCoull_CI_1x2.Rd | 24 man/Arcsine_CI_1x2.Rd | 23 man/BaptistaPike_exact_conditional_CI_2x2.Rd | 26 man/BaptistaPike_midP_CI_2x2.Rd | 20 man/Bhapkar_test_paired_cxc.Rd | 12 man/Blaker_exact_CI_1x2.Rd | 24 man/Blaker_exact_test_1x2.Rd | 24 man/Blaker_midP_CI_1x2.Rd | 24 man/Blaker_midP_test_1x2.Rd | 24 man/BonettPrice_hybrid_Wilson_score_CI_CC_paired_2x2.Rd | 22 man/BonettPrice_hybrid_Wilson_score_CI_paired_2x2.Rd | 19 man/Bonferroni_type_CIs_paired_cxc.Rd | 12 man/Bonferroni_type_CIs_rxc.Rd | 12 man/Brant_test_2xc.Rd | 18 man/BreslowDay_homogeneity_test_stratified_2x2.Rd | 26 man/Chacko_test_1xc.Rd | 12 man/ClopperPearson_exact_CI_1x2.Rd | 24 man/ClopperPearson_exact_CI_1x2_beta_version.Rd | 28 man/ClopperPearson_midP_CI_1x2.Rd | 24 man/CochranArmitage_CI_rx2.Rd | 20 man/CochranArmitage_MH_tests_rx2.Rd | 21 man/CochranArmitage_exact_cond_midP_tests_rx2.Rd | 20 man/CochranMantelHaenszel_test_stratified_2x2.Rd | 26 man/Cochran_Q_test_stratified_2x2.Rd | 31 man/Cornfield_exact_conditional_CI_2x2.Rd | 20 man/Cornfield_midP_CI_2x2.Rd | 20 man/Cumulative_models_for_2xc.Rd | 25 man/Cumulative_models_for_rxc.Rd | 27 man/Exact_binomial_test_1x2.Rd | 25 man/Exact_cond_midP_linear_rank_tests_2xc.Rd | 20 man/Exact_cond_midP_tests_rxc.Rd | 16 man/Exact_cond_midP_unspecific_ordering_rx2.Rd | 17 man/Exact_multinomial_test_1xc.Rd | 15 man/Exact_unconditional_test_2x2.Rd | 25 man/FisherFreemanHalton_asymptotic_test_rxc.Rd | 13 man/Fisher_exact_test_2x2.Rd | 20 man/Fisher_midP_test_2x2.Rd | 20 man/FleissEveritt_test_paired_cxc.Rd | 12 man/FleissLevinPaik_test_paired_cxc.Rd | 12 man/Gart_adjusted_logit_CI_2x2.Rd | 16 man/Gold_Wald_CIs_1xc.Rd | 11 man/Goodman_Wald_CIs_1xc.Rd | 11 man/Goodman_Wald_CIs_for_diffs_1xc.Rd | 16 man/Goodman_Wilson_score_CIs_1xc.Rd | 11 man/Independence_smoothed_logit_CI_2x2.Rd | 16 man/Inv_sinh_CI_OR_2x2.Rd | 16 man/Inv_sinh_CI_ratio_2x2.Rd | 16 man/InverseVariance_estimate_stratified_2x2.Rd | 26 man/Jeffreys_CI_1x2.Rd | 24 man/JonckheereTerpstra_test_rxc.Rd | 30 man/Katz_log_CI_2x2.Rd | 16 man/Kendalls_tau_b_rxc.Rd | 31 man/Kendalls_tau_b_rxc_bca.Rd | 31 man/Koopman_asymptotic_score_CI_2x2.Rd | 16 man/KruskalWallis_asymptotic_test_rxc.Rd | 20 man/LR_CI_1x2.Rd | 24 man/LR_test_1x2.Rd | 23 man/LR_test_1xc.Rd | 12 man/LR_test_2x2.Rd | 20 man/ML_estimates_and_CIs_stratified_2x2.Rd | 27 man/MOVER_R_Wilson_CI_OR_2x2.Rd | 14 man/MOVER_R_Wilson_CI_ratio_2x2.Rd | 12 man/MOVER_Wilson_score_CI_paired_2x2.Rd | 17 man/MantelHaenszel_estimate_stratified_2x2.Rd | 26 man/MantelHaenszel_test_2xc.Rd | 13 man/McNemarBowker_test_paired_cxc.Rd | 11 man/McNemar_asymptotic_test_CC_paired_2x2.Rd | 24 man/McNemar_asymptotic_test_paired_2x2.Rd | 25 man/McNemar_exact_cond_test_paired_2x2.Rd | 25 man/McNemar_exact_unconditional_test_paired_2x2.Rd | 30 man/McNemar_midP_test_paired_2x2.Rd | 24 man/Mee_asymptotic_score_CI_2x2.Rd | 15 man/MidP_binomial_test_1x2.Rd | 18 man/MidP_multinomial_test_1xc.Rd | 15 man/MiettinenNurminen_asymptotic_score_CI_OR_2x2.Rd | 21 man/MiettinenNurminen_asymptotic_score_CI_difference_2x2.Rd | 18 man/MiettinenNurminen_asymptotic_score_CI_ratio_2x2.Rd | 16 man/Newcombe_hybrid_score_CI_2x2.Rd | 14 man/Newcombe_square_and_add_CI_paired_2x2.Rd | 14 man/Pearson_LR_homogeneity_test_stratified_2x2.Rd | 26 man/Pearson_LR_test_common_effect_stratified_2x2.Rd | 26 man/Pearson_LR_tests_cum_OR_2xc.Rd | 11 man/Pearson_LR_tests_rxc.Rd | 46 man/Pearson_LR_tests_unspecific_ordering_rx2.Rd | 20 man/Pearson_chi_squared_test_1xc.Rd | 12 man/Pearson_chi_squared_test_2x2.Rd | 20 man/Pearson_chi_squared_test_CC_2x2.Rd | 20 man/Pearson_correlation_coefficient_rxc.Rd | 33 man/Pearson_correlation_coefficient_rxc_bca.Rd | 32 man/Pearson_residuals_rxc.Rd | 29 man/Peto_OR_estimate_stratified_2x2.Rd | 22 man/Peto_homogeneity_test_stratified_2x2.Rd | 21 man/PriceBonett_approximate_Bayes_CI_2x2.Rd | 20 man/QuesenberryHurst_Wilson_score_CIs_1xc.Rd | 10 man/RBG_test_and_CI_stratified_2x2.Rd | 25 man/Scheffe_type_CIs_paired_cxc.Rd | 11 man/Scheffe_type_CIs_rxc.Rd | 11 man/Score_test_1x2.Rd | 18 man/Score_test_CC_1x2.Rd | 18 man/Score_test_and_CI_marginal_mean_scores_paired_cxc.Rd | 22 man/Score_test_for_effect_in_the_probit_model_2xc.Rd | 18 man/Spearman_correlation_coefficient_rxc.Rd | 32 man/Spearman_correlation_coefficient_rxc_bca.Rd | 36 man/Stuart_test_paired_cxc.Rd | 11 man/Tang_asymptotic_score_CI_paired_2x2.Rd | 14 man/Tango_asymptotic_score_CI_paired_2x2.Rd | 14 man/Transformed_Blaker_exact_CI_paired_2x2.Rd | 14 man/Transformed_Clopper_Pearson_exact_CI_paired_2x2.Rd | 24 man/Transformed_Clopper_Pearson_midP_CI_paired_2x2.Rd | 24 man/Transformed_Wilson_score_CI_paired_2x2.Rd | 20 man/Trend_estimate_CI_tests_rx2.Rd | 27 man/Uncorrected_asymptotic_score_CI_2x2.Rd | 23 man/Wald_CI_1x2.Rd | 22 man/Wald_CI_2x2.Rd | 15 man/Wald_CI_AgrestiMin_paired_2x2.Rd | 23 man/Wald_CI_BonettPrice_paired_2x2.Rd | 23 man/Wald_CI_CC_1x2.Rd | 18 man/Wald_CI_CC_2x2.Rd | 18 man/Wald_CI_OR_Laplace_paired_2x2.Rd | 20 man/Wald_CI_OR_paired_2x2.Rd | 14 man/Wald_CI_diff_CC_paired_2x2.Rd | 20 man/Wald_CI_diff_paired_2x2.Rd | 20 man/Wald_CI_ratio_paired_2x2.Rd | 17 man/Wald_test_1x2.Rd | 18 man/Wald_test_CC_1x2.Rd | 23 man/Wald_test_and_CI_common_diff_stratified_2x2.Rd | 32 man/Wald_test_and_CI_common_ratio_stratified_2x2.Rd | 29 man/Wald_test_and_CI_marginal_mean_ranks_paired_cxc.Rd | 27 man/Wald_test_and_CI_marginal_mean_scores_paired_cxc.Rd | 28 man/Wilson_score_CI_1x2.Rd | 22 man/Wilson_score_CI_CC_1x2.Rd | 28 man/Woolf_logit_CI_2x2.Rd | 17 man/Woolf_test_and_CI_stratified_2x2.Rd | 25 man/Z_unpooled_test_2x2.Rd | 20 man/bentur_2009.Rd |only man/cavo_2012.Rd |only man/contingencytables.Rd | 3 man/contingencytables_result.Rd |only man/doll_hill_1950.Rd |only man/ezra_2010.Rd |only man/fischer_1999.Rd |only man/fleiss_2003.Rd |only man/fontanella_2008.Rd |only man/gamma_coefficient_rxc.Rd | 33 man/gamma_coefficient_rxc_bca.Rd | 31 man/hine_1989.Rd |only man/hypothetical.Rd |only man/indredavik_2008.Rd |only man/lampasona_2013.Rd |only man/ligarden_2010.Rd |only man/linear_by_linear_test_rxc.Rd | 37 man/lydersen_2012a.Rd |only man/mills_graubard_1987.Rd |only man/perondi_2004.Rd |only man/peterson_2007.Rd |only man/print.Rd |only man/ritland_2007.Rd |only man/singh_2010_1.Rd |only man/snp6498169.Rd |only man/stratified_2x2_tables.Rd | 16 man/table_7.3.Rd |only man/table_7.4.Rd |only man/table_7.5.Rd |only man/table_7.6.Rd |only man/table_7.7.Rd |only man/table_7.8.Rd |only man/table_7.9.Rd |only man/tea.Rd |only man/the_1x2_table_CIs.Rd | 10 man/the_1x2_table_tests.Rd | 10 man/the_1xc_table_CIs.Rd | 4 man/the_1xc_table_tests.Rd | 6 man/the_2x2_table_CIs_OR.Rd | 16 man/the_2x2_table_CIs_difference.Rd | 10 man/the_2x2_table_CIs_ratio.Rd | 10 man/the_2x2_table_tests.Rd | 16 man/the_2xc_table.Rd | 9 man/the_paired_2x2_table_CIs_OR.Rd | 8 man/the_paired_2x2_table_CIs_difference.Rd | 8 man/the_paired_2x2_table_CIs_ratio.Rd | 8 man/the_paired_2x2_table_tests.Rd | 20 man/the_paired_cxc_table_nominal.Rd | 5 man/the_paired_cxc_table_ordinal.Rd | 13 man/the_rx2_table.Rd | 17 man/the_rxc_table.Rd | 53 man/validateArguments.Rd |only tests/testthat/test-ch10.R | 39 tests/testthat/test-ch2.R | 70 - tests/testthat/test-ch3.R | 38 tests/testthat/test-ch4.R | 91 - tests/testthat/test-ch5.R | 30 tests/testthat/test-ch6.R | 31 tests/testthat/test-ch7.R | 60 - tests/testthat/test-ch8.R | 70 - tests/testthat/test-ch9.R | 36 tests/testthat/test-classInstantiation.R |only tests/testthat/test-issue13.R |only tests/testthat/test-issue34.R | 10 tests/testthat/test-issue36.R | 20 tests/testthat/test-issue37.R | 2 tests/testthat/test-outputFormat.R | 655 ++-------- tests/testthat/test-print.R |only tests/testthat/test-validation.R |only 379 files changed, 5396 insertions(+), 7141 deletions(-)
More information about contingencytables at CRAN
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-25 0.2.2
2017-06-18 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2021-09-28 1.3.1
2018-09-10 1.3.0
2018-01-24 1.2.9
2015-07-05 1.2.7
2015-02-22 1.2.6
2013-12-22 1.2.5
2013-04-19 1.2.4
2012-12-27 1.2.3
2012-01-29 1.2.2
2011-08-24 1.2.1
2011-07-31 1.2
2011-03-21 1.1
2010-09-15 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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