Title: Fair Models in Machine Learning
Description: Fair machine learning regression models which take sensitive attributes into account in
model estimation. Currently implementing Komiyama et al. (2018)
<http://proceedings.mlr.press/v80/komiyama18a/komiyama18a.pdf>, Zafar et al.
(2019) <https://www.jmlr.org/papers/volume20/18-262/18-262.pdf> and my own
approach from Scutari, Panero and Proissl (2022)
<https://link.springer.com/content/pdf/10.1007/s11222-022-10143-w.pdf>
that uses ridge regression to enforce fairness.
Author: Marco Scutari [aut, cre]
Maintainer: Marco Scutari <scutari@bnlearn.com>
Diff between fairml versions 0.7 dated 2022-09-10 and 0.8 dated 2023-05-13
fairml-0.7/fairml/data/vuc.test.rda |only fairml-0.7/fairml/data/vur.test.rda |only fairml-0.8/fairml/Changelog | 17 + fairml-0.8/fairml/DESCRIPTION | 16 - fairml-0.8/fairml/MD5 | 74 +++-- fairml-0.8/fairml/NAMESPACE | 9 fairml-0.8/fairml/R/crossvalidation.R | 104 +++++-- fairml-0.8/fairml/R/diagnostic-plots.R | 150 ++++++++++- fairml-0.8/fairml/R/fgrrm.R | 339 +++++++++++++++++++------ fairml-0.8/fairml/R/frrm.R | 96 ------- fairml-0.8/fairml/R/getters.R | 81 +++++ fairml-0.8/fairml/R/glmnet.R |only fairml-0.8/fairml/R/globals.R | 12 fairml-0.8/fairml/R/nclm.R | 36 +- fairml-0.8/fairml/R/optisolve.R |only fairml-0.8/fairml/R/predict.R | 105 +++++-- fairml-0.8/fairml/R/profile-plots.R | 146 +++++++--- fairml-0.8/fairml/R/sanitization-arguments.R | 47 +++ fairml-0.8/fairml/R/sanitization-data.R | 85 +++++- fairml-0.8/fairml/R/sanitization-types.R | 14 + fairml-0.8/fairml/R/summary.R | 13 fairml-0.8/fairml/R/two-stage-regression.R | 37 -- fairml-0.8/fairml/R/utils.R | 101 ++++++- fairml-0.8/fairml/R/zlm.R | 107 +++++-- fairml-0.8/fairml/R/zlrm.R | 114 ++++++-- fairml-0.8/fairml/data/bank.rda |binary fairml-0.8/fairml/data/drug.consumption.rda |only fairml-0.8/fairml/data/health.retirement.rda |only fairml-0.8/fairml/data/obesity.levels.rda |only fairml-0.8/fairml/data/vu.test.rda |only fairml-0.8/fairml/man/adult.Rd | 30 ++ fairml-0.8/fairml/man/bank.Rd | 35 ++ fairml-0.8/fairml/man/communities.and.crime.Rd | 3 fairml-0.8/fairml/man/drug.consumption.Rd |only fairml-0.8/fairml/man/fairml-package.Rd | 41 ++- fairml-0.8/fairml/man/fairml.cv.Rd | 16 - fairml-0.8/fairml/man/fairness.profile.plot.Rd | 30 +- fairml-0.8/fairml/man/flchain.Rd |only fairml-0.8/fairml/man/frrm.Rd | 39 ++ fairml-0.8/fairml/man/health.retirement.Rd |only fairml-0.8/fairml/man/methods.Rd | 9 fairml-0.8/fairml/man/obesity.levels.Rd |only fairml-0.8/fairml/man/synthetic.Rd | 100 +++++-- fairml-0.8/fairml/man/zlm.Rd | 17 + 44 files changed, 1491 insertions(+), 532 deletions(-)
Title: Tools for Choice Model Estimation and Application
Description: Choice models are a widely used technique across numerous scientific disciplines. The Apollo package is a very flexible tool for the estimation and application
of choice models in R. Users are able to write their own
model functions or use a mix of already available ones. Random heterogeneity,
both continuous and discrete and at the level of individuals and
choices, can be incorporated for all models. There is support for both standalone
models and hybrid model structures. Both classical
and Bayesian estimation is available, and multiple discrete
continuous models are covered in addition to discrete choice.
Multi-threading processing is supported for estimation and a large
number of pre and post-estimation routines, including for computing posterior
(individual-level) distributions are available.
For examples, a manual, and a support forum, visit
<http://www.ApolloChoiceModelling.com>. For more information on choice
models see Train, K. (2009) <isbn:978-0-521-74738-7> and [...truncated...]
Author: Stephane Hess [aut, cre],
David Palma [aut],
Thomas Hancock [ctb]
Maintainer: Stephane Hess <S.Hess@leeds.ac.uk>
Diff between apollo versions 0.2.8 dated 2022-08-09 and 0.2.9 dated 2023-05-13
DESCRIPTION | 10 MD5 | 218 ++-- NAMESPACE | 10 R/RcppExports.R | 78 - R/apollo_attach.R | 12 R/apollo_avgInterDraws.R | 44 R/apollo_avgIntraDraws.R | 20 R/apollo_basTest.R | 28 R/apollo_bootstrap.R | 32 R/apollo_checkArguments.R | 12 R/apollo_choiceAnalysis.R | 10 R/apollo_classAlloc.R | 14 R/apollo_cnl.R | 703 ++++++------- R/apollo_combineModels.R | 18 R/apollo_combineResults.R | 30 R/apollo_compareInputs.R | 6 R/apollo_conditionals.R | 6 R/apollo_deltaMethod.R | 163 ++- R/apollo_dft.R | 34 R/apollo_diagnostics.R | 55 - R/apollo_el.R | 14 R/apollo_emdc.R |only R/apollo_emdc1.R |only R/apollo_emdc2.R |only R/apollo_estimate.R | 2044 +++++++++++++++++++++------------------ R/apollo_estimateHB.R | 1044 ++++++++++--------- R/apollo_expandLoop.R | 12 R/apollo_fmnl.R | 22 R/apollo_insertComponentName.R | 4 R/apollo_insertFunc.R | 869 ++++++++-------- R/apollo_insertOLList.R |only R/apollo_insertQuotes.R | 2 R/apollo_lc.R | 37 R/apollo_lcConditionals.R | 12 R/apollo_lcEM.R | 34 R/apollo_lcUnconditionals.R | 4 R/apollo_loadModel.R | 4 R/apollo_longToWide.R | 14 R/apollo_lrTest.R | 25 R/apollo_makeCluster.R | 6 R/apollo_makeDraws.R | 36 R/apollo_makeGrad.R | 20 R/apollo_makeLogLike.R | 480 ++++----- R/apollo_mdcev.R | 17 R/apollo_mdcev2.R | 12 R/apollo_mdcnev.R | 16 R/apollo_mixConditionals.R | 12 R/apollo_mixEM.R | 30 R/apollo_mixUnconditionals.R | 8 R/apollo_mnl.R | 950 +++++++++--------- R/apollo_modelAveraging.R |only R/apollo_modelOutput.R | 299 +++-- R/apollo_modifyUserDefFunc.R | 194 +++ R/apollo_nl.R | 735 +++++++------- R/apollo_normalDensity.R | 14 R/apollo_ol.R | 612 +++++------ R/apollo_op.R | 622 +++++------ R/apollo_outOfSample.R | 333 +++--- R/apollo_panelProd.R | 31 R/apollo_prediction.R | 16 R/apollo_prepareProb.R | 43 R/apollo_preprocess.R | 224 ++-- R/apollo_print.R | 58 - R/apollo_readBeta.R | 6 R/apollo_rrm.R | 1112 ++++++++++----------- R/apollo_saveOutput.R | 563 ++++++---- R/apollo_searchStart.R | 8 R/apollo_sharesTest.R | 25 R/apollo_sink.R | 4 R/apollo_speedTest.R | 6 R/apollo_unconditionals.R | 6 R/apollo_validate.R | 166 +-- R/apollo_validateControl.R | 41 R/apollo_validateData.R | 188 +-- R/apollo_validateHBControl.R | 41 R/apollo_validateInputs.R | 32 R/apollo_varcov.R | 778 +++++++------- R/apollo_weighting.R | 280 ++--- R/onAttach.R | 91 + R/print.apollo.R |only R/summary.apollo.R |only build/vignette.rds |binary inst/doc/apollofirstexample.R | 620 +++++------ inst/doc/apollofirstexample.html | 1998 +++++++++++++++++++------------------- man/apollo_classAlloc.Rd | 4 man/apollo_cnl.Rd | 2 man/apollo_deltaMethod.Rd | 3 man/apollo_dft.Rd | 2 man/apollo_el.Rd | 2 man/apollo_emdc.Rd |only man/apollo_emdc1.Rd |only man/apollo_emdc2.Rd |only man/apollo_estimate.Rd | 8 man/apollo_fmnl.Rd | 2 man/apollo_insertOLList.Rd |only man/apollo_mdcev.Rd | 2 man/apollo_mdcev2.Rd | 2 man/apollo_mdcnev.Rd | 2 man/apollo_mnl.Rd | 4 man/apollo_modelAveraging.Rd |only man/apollo_modelOutput.Rd | 6 man/apollo_modifyUserDefFunc.Rd | 5 man/apollo_nl.Rd | 2 man/apollo_normalDensity.Rd | 16 man/apollo_ol.Rd | 2 man/apollo_op.Rd | 2 man/apollo_outOfSample.Rd | 40 man/apollo_print.Rd | 6 man/apollo_rrm.Rd | 10 man/apollo_saveOutput.Rd | 12 man/apollo_validateHBControl.Rd | 1 man/apollo_validateInputs.Rd | 1 man/apollo_varcov.Rd | 1 man/print.apollo.Rd |only man/summary.apollo.Rd |only src/Makevars | 1 src/Makevars.win | 1 117 files changed, 8801 insertions(+), 7715 deletions(-)
Title: Visualizations of Distributions and Uncertainty
Description: Provides primitives for visualizing distributions using 'ggplot2' that are particularly tuned for
visualizing uncertainty in either a frequentist or Bayesian mode. Both analytical distributions (such as
frequentist confidence distributions or Bayesian priors) and distributions represented as samples (such as
bootstrap distributions or Bayesian posterior samples) are easily visualized. Visualization primitives include
but are not limited to: points with multiple uncertainty intervals,
eye plots (Spiegelhalter D., 1999) <https://ideas.repec.org/a/bla/jorssa/v162y1999i1p45-58.html>,
density plots, gradient plots, dot plots (Wilkinson L., 1999) <doi:10.1080/00031305.1999.10474474>,
quantile dot plots (Kay M., Kola T., Hullman J., Munson S., 2016) <doi:10.1145/2858036.2858558>,
complementary cumulative distribution function
barplots (Fernandes M., Walls L., Munson S., Hullman J., Kay M., 2018) <doi:10.1145/3173574.3173718>,
and fit curves with multiple uncertainty ri [...truncated...]
Author: Matthew Kay [aut, cre],
Brenton M. Wiernik [ctb]
Maintainer: Matthew Kay <mjskay@northwestern.edu>
Diff between ggdist versions 3.2.1 dated 2023-01-18 and 3.3.0 dated 2023-05-13
ggdist-3.2.1/ggdist/man/density_auto.Rd |only ggdist-3.2.1/ggdist/man/figures |only ggdist-3.2.1/ggdist/tests/testthat/_snaps/test.geom_pointinterval/grouped-pointintervals-h-stat-mode-hdi.svg |only ggdist-3.2.1/ggdist/tests/testthat/_snaps/test.stat_sample_slabinterval/halfeyeh-log-scale-transform.svg |only ggdist-3.2.1/ggdist/tests/testthat/_snaps/test.stat_sample_slabinterval/pdf-n-for-different-sized-groups.svg |only ggdist-3.3.0/ggdist/DESCRIPTION | 39 ggdist-3.3.0/ggdist/MD5 | 417 +-- ggdist-3.3.0/ggdist/NAMESPACE | 38 ggdist-3.3.0/ggdist/NEWS.md | 65 ggdist-3.3.0/ggdist/R/abstract_stat_slabinterval.R | 43 ggdist-3.3.0/ggdist/R/auto_partial.R | 14 ggdist-3.3.0/ggdist/R/bounder.R |only ggdist-3.3.0/ggdist/R/curve_interval.R | 110 ggdist-3.3.0/ggdist/R/density.R | 491 +++- ggdist-3.3.0/ggdist/R/distributions.R | 59 ggdist-3.3.0/ggdist/R/geom_dotsinterval.R | 9 ggdist-3.3.0/ggdist/R/geom_lineribbon.R | 31 ggdist-3.3.0/ggdist/R/geom_slabinterval.R | 82 ggdist-3.3.0/ggdist/R/geom_spike.R |only ggdist-3.3.0/ggdist/R/lkjcorr_marginal.R | 31 ggdist-3.3.0/ggdist/R/parse_dist.R | 61 ggdist-3.3.0/ggdist/R/point_interval.R | 119 - ggdist-3.3.0/ggdist/R/rd_slabinterval.R | 6 ggdist-3.3.0/ggdist/R/rd_spike.R |only ggdist-3.3.0/ggdist/R/scale_thickness.R | 9 ggdist-3.3.0/ggdist/R/smooth.R | 21 ggdist-3.3.0/ggdist/R/stat_dotsinterval.R | 2 ggdist-3.3.0/ggdist/R/stat_lineribbon.R | 3 ggdist-3.3.0/ggdist/R/stat_pointinterval.R | 2 ggdist-3.3.0/ggdist/R/stat_slabinterval.R | 233 +- ggdist-3.3.0/ggdist/R/stat_spike.R |only ggdist-3.3.0/ggdist/R/testthat.R | 39 ggdist-3.3.0/ggdist/R/util.R | 20 ggdist-3.3.0/ggdist/R/weighted_ecdf.R | 45 ggdist-3.3.0/ggdist/R/weighted_hist.R | 244 ++ ggdist-3.3.0/ggdist/R/weighted_quantile.R | 1 ggdist-3.3.0/ggdist/inst/doc/dotsinterval.R | 8 ggdist-3.3.0/ggdist/inst/doc/dotsinterval.Rmd | 10 ggdist-3.3.0/ggdist/inst/doc/dotsinterval.html | 24 ggdist-3.3.0/ggdist/inst/doc/freq-uncertainty-vis.R | 2 ggdist-3.3.0/ggdist/inst/doc/freq-uncertainty-vis.Rmd | 2 ggdist-3.3.0/ggdist/inst/doc/freq-uncertainty-vis.html | 10 ggdist-3.3.0/ggdist/inst/doc/lineribbon.R | 9 ggdist-3.3.0/ggdist/inst/doc/lineribbon.Rmd | 18 ggdist-3.3.0/ggdist/inst/doc/lineribbon.html | 262 +- ggdist-3.3.0/ggdist/inst/doc/slabinterval.R | 118 - ggdist-3.3.0/ggdist/inst/doc/slabinterval.Rmd | 195 - ggdist-3.3.0/ggdist/inst/doc/slabinterval.html | 1146 +++++----- ggdist-3.3.0/ggdist/man/align.Rd |only ggdist-3.3.0/ggdist/man/automatic-partial-functions.Rd | 11 ggdist-3.3.0/ggdist/man/bandwidth.Rd |only ggdist-3.3.0/ggdist/man/bounder_cdf.Rd |only ggdist-3.3.0/ggdist/man/bounder_cooke.Rd |only ggdist-3.3.0/ggdist/man/bounder_range.Rd |only ggdist-3.3.0/ggdist/man/breaks.Rd |only ggdist-3.3.0/ggdist/man/curve_interval.Rd | 70 ggdist-3.3.0/ggdist/man/density_bounded.Rd | 69 ggdist-3.3.0/ggdist/man/density_histogram.Rd |only ggdist-3.3.0/ggdist/man/density_unbounded.Rd | 42 ggdist-3.3.0/ggdist/man/geom_interval.Rd | 3 ggdist-3.3.0/ggdist/man/geom_lineribbon.Rd | 6 ggdist-3.3.0/ggdist/man/geom_pointinterval.Rd | 3 ggdist-3.3.0/ggdist/man/geom_slab.Rd | 5 ggdist-3.3.0/ggdist/man/geom_slabinterval.Rd | 2 ggdist-3.3.0/ggdist/man/geom_spike.Rd |only ggdist-3.3.0/ggdist/man/ggdist-ggproto.Rd | 8 ggdist-3.3.0/ggdist/man/marginalize_lkjcorr.Rd | 27 ggdist-3.3.0/ggdist/man/parse_dist.Rd | 58 ggdist-3.3.0/ggdist/man/point_interval.Rd | 43 ggdist-3.3.0/ggdist/man/scale_thickness.Rd | 67 ggdist-3.3.0/ggdist/man/smooth_density.Rd | 29 ggdist-3.3.0/ggdist/man/smooth_discrete.Rd | 2 ggdist-3.3.0/ggdist/man/smooth_none.Rd | 2 ggdist-3.3.0/ggdist/man/stat_ccdfinterval.Rd | 75 ggdist-3.3.0/ggdist/man/stat_cdfinterval.Rd | 75 ggdist-3.3.0/ggdist/man/stat_dots.Rd | 6 ggdist-3.3.0/ggdist/man/stat_dotsinterval.Rd | 6 ggdist-3.3.0/ggdist/man/stat_eye.Rd | 73 ggdist-3.3.0/ggdist/man/stat_gradientinterval.Rd | 73 ggdist-3.3.0/ggdist/man/stat_halfeye.Rd | 73 ggdist-3.3.0/ggdist/man/stat_histinterval.Rd | 93 ggdist-3.3.0/ggdist/man/stat_interval.Rd | 3 ggdist-3.3.0/ggdist/man/stat_lineribbon.Rd | 8 ggdist-3.3.0/ggdist/man/stat_pointinterval.Rd | 3 ggdist-3.3.0/ggdist/man/stat_ribbon.Rd | 6 ggdist-3.3.0/ggdist/man/stat_slab.Rd | 73 ggdist-3.3.0/ggdist/man/stat_slabinterval.Rd | 70 ggdist-3.3.0/ggdist/man/stat_spike.Rd |only ggdist-3.3.0/ggdist/man/weighted_ecdf.Rd |only ggdist-3.3.0/ggdist/man/weighted_quantile.Rd | 3 ggdist-3.3.0/ggdist/tests/testthat.R | 19 ggdist-3.3.0/ggdist/tests/testthat/Rplots.pdf |binary ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.density |only ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_interval/grouped-intervals-h-stat-mode-hdi.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_interval/multimodal-intervals-h-stat-dodged.svg | 64 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_interval/multimodal-intervals-stat-dodged.svg | 41 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_lineribbon/default-draw-order-interleaves-levels.svg |only ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_lineribbon/draw-group-by-group.svg |only ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_lineribbon/geom-lineribbon-with-nas-in-ymin-ymax.svg |only ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_lineribbon/one-group-geom-lineribbon-horizontal.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_lineribbon/one-group-geom-lineribbon-reverse-order.svg | 30 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_lineribbon/one-group-geom-lineribbon.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_lineribbon/two-group-stat-lineribbons-grouped-by-group.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_pointinterval/grouped-pointintervals-h-reverse-order.svg | 50 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_pointinterval/grouped-pointintervals-h.svg | 48 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_slabinterval/inf-and-na-in-x-works.svg | 4 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_slabinterval/missing-width.svg | 2 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_slabinterval/side-both-with-nas-in-thickness.svg | 8 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_slabinterval/slabinterval-with-nas-in-thickness.svg | 4 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.geom_slabinterval/varying-side.svg | 4 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.guide_rampbar/color-ramp-with-to.svg | 40 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.guide_rampbar/color-ramp-without-to.svg | 40 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_/direct-scale-setting.svg | 2 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_/slab-color-continuous-mapping.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_/slab-color-discrete-mapping.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_/slab-linetype-discrete-mapping.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_/slab-linetype-plus-slab-color-mapping.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_/slab-linewidth-continuous-mapping.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_/slab-linewidth-discrete-mapping.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_/slab-size-continuous-mapping.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_/slab-size-discrete-mapping.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_colour_ramp/basic-color-ramp.svg | 40 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_colour_ramp/basic-colour-ramp.svg | 40 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_colour_ramp/basic-discrete-color-ramp.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_colour_ramp/basic-discrete-colour-ramp.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_colour_ramp/fill-ramp-with-lineribbon.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_thickness/basic-scale-thickness-identity.svg | 2 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.scale_thickness/basic-scale-thickness-shared.svg | 2 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.stat_cdfinterval/vertical-ccdf-bar-plot-with-dodging-3-groups.svg | 78 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.stat_dist_slabinterval.md |only ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.stat_dist_slabinterval/beta-eye-with-logit-scale.svg | 4 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.stat_dist_slabinterval/constant-dist-on-ccdf-log-scale.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.stat_dist_slabinterval/constant-dist-on-ccdf-sample-data.svg | 2 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.stat_dist_slabinterval/constant-dist-on-ccdf.svg | 6 ggdist-3.3.0/ggdist/tests/testthat/_snaps/test.stat_dist_slabinterval/constant-dist-on-halfeye-expanded.svg | 6 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ggdist-3.3.0/ggdist/tests/testthat/test.stat_sample_slabinterval.R | 189 + ggdist-3.3.0/ggdist/tests/testthat/test.stat_spike.R |only ggdist-3.3.0/ggdist/tests/testthat/test.weighted_ecdf.R | 4 ggdist-3.3.0/ggdist/tests/testthat/test.weighted_hist.R | 75 ggdist-3.3.0/ggdist/vignettes/dotsinterval.Rmd | 10 ggdist-3.3.0/ggdist/vignettes/freq-uncertainty-vis.Rmd | 2 ggdist-3.3.0/ggdist/vignettes/lineribbon.Rmd | 18 ggdist-3.3.0/ggdist/vignettes/slabinterval.Rmd | 195 - 223 files changed, 5727 insertions(+), 3158 deletions(-)
Title: Compare Real Valued Random Variables
Description: A framework with tools to compare two random variables via stochastic dominance. See the README.md at <https://github.com/EtorArza/RVCompare> for a quick start guide. It can compute the Cp and Cd of two probability distributions and the Cumulative Difference Plot as explained in E. Arza (2022) <doi:10.1080/10618600.2022.2084405>. Uses bootstrap or DKW-bounds to compute the confidence bands of the cumulative distributions. These two methods are described in B. Efron. (1979) <doi:10.1214/aos/1176344552> and P. Massart (1990) <doi:10.1214/aop/1176990746>.
Author: Etor Arza
Maintainer: Etor Arza <etorarza@gmail.com>
Diff between RVCompare versions 0.1.6 dated 2022-05-27 and 0.1.7 dated 2023-05-13
DESCRIPTION | 10 +++++----- MD5 | 5 +++-- R/RVCompare.R | 4 ++-- README.md |only 4 files changed, 10 insertions(+), 9 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <https://www.canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut],
Connie Brett [aut, cre]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 1.42.9 dated 2023-03-10 and 1.43.7 dated 2023-05-13
DESCRIPTION | 6 +- MD5 | 28 ++++++------- NEWS.md | 7 +++ R/canvasXpress.R | 2 R/ggplot_as_list.R | 37 +++++++++++------- README.md | 2 build/vignette.rds |binary inst/doc/additional_examples.html | 4 - inst/doc/getting_started.Rmd | 2 inst/doc/getting_started.html | 17 +++----- inst/htmlwidgets/canvasXpress.yaml | 2 inst/htmlwidgets/lib/canvasXpress/canvasXpress.min.js | 6 +- inst/ui-examples/cX-function.R.gz |binary tests/testthat/test-ui-genome.R | 6 ++ vignettes/getting_started.Rmd | 2 15 files changed, 72 insertions(+), 49 deletions(-)
Title: Read ESA SNAP Processed Raster Format in R
Description: It helps you to read (.dim) images with CRS directly into R programming. One can import both Sentinel 1 and 2 images or any processed data with this software.
Author: Subhadip Datta
Maintainer: Subhadip Datta <subhadipdatta007@gmail.com>
Diff between ReadDIM versions 0.2.10 dated 2020-06-23 and 0.2.11 dated 2023-05-13
DESCRIPTION | 12 +++++------- MD5 | 6 +++--- NAMESPACE | 3 --- R/readdim.R | 5 +---- 4 files changed, 9 insertions(+), 17 deletions(-)
Title: Extract Values from Raster
Description: By using a multispectral image and ESRI shapefile (Point/ Line/ Polygon), a data table will be generated for classification, regression or other processing. The data table will be contained by band wise raster values and shapefile ids (User Defined).
Author: Suhadip Datta
Maintainer: Subhadip Datta <subhadipdatta007@gmail.com>
Diff between ExtractTrainData versions 9.1.5 dated 2020-06-23 and 9.1.6 dated 2023-05-13
DESCRIPTION | 16 +++++++--------- MD5 | 10 +++++----- NAMESPACE | 3 --- R/code.R | 3 --- R/code2.R | 2 -- R/code3.R | 6 ------ 6 files changed, 12 insertions(+), 28 deletions(-)
More information about ExtractTrainData at CRAN
Permanent link
Title: Display and Analyze ROC Curves
Description: Tools for visualizing, smoothing and comparing receiver operating characteristic (ROC curves). (Partial) area under the curve (AUC) can be compared with statistical tests based on U-statistics or bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.
Author: Xavier Robin [cre, aut] ,
Natacha Turck [aut],
Alexandre Hainard [aut],
Natalia Tiberti [aut],
Frederique Lisacek [aut],
Jean-Charles Sanchez [aut],
Markus Mueller [aut],
Stefan Siegert [ctb] ,
Matthias Doering [ctb] ,
Zane Billings [ctb]
Maintainer: Xavier Robin <pROC-cran@xavier.robin.name>
Diff between pROC versions 1.18.0 dated 2021-09-03 and 1.18.2 dated 2023-05-13
pROC-1.18.0/pROC/tests/figs |only pROC-1.18.2/pROC/DESCRIPTION | 8 pROC-1.18.2/pROC/MD5 | 140 pROC-1.18.2/pROC/NEWS | 8 pROC-1.18.2/pROC/R/auc.R | 8 pROC-1.18.2/pROC/R/bootstrap.R | 56 pROC-1.18.2/pROC/R/ci.R | 2 pROC-1.18.2/pROC/R/ci.auc.R | 16 pROC-1.18.2/pROC/R/ci.coords.R | 20 pROC-1.18.2/pROC/R/ci.multiclass.auc.R | 2 pROC-1.18.2/pROC/R/ci.se.R | 14 pROC-1.18.2/pROC/R/ci.sp.R | 14 pROC-1.18.2/pROC/R/ci.thresholds.R | 8 pROC-1.18.2/pROC/R/coords.R | 28 pROC-1.18.2/pROC/R/cov.R | 8 pROC-1.18.2/pROC/R/delong.R | 4 pROC-1.18.2/pROC/R/lines.roc.R | 2 pROC-1.18.2/pROC/R/multiclass.R | 10 pROC-1.18.2/pROC/R/obuchowski.R | 22 pROC-1.18.2/pROC/R/plot.roc.R | 2 pROC-1.18.2/pROC/R/power.roc.test.R | 48 pROC-1.18.2/pROC/R/print.R | 56 pROC-1.18.2/pROC/R/roc.R | 38 pROC-1.18.2/pROC/R/roc.test.R | 14 pROC-1.18.2/pROC/R/roc.utils.R | 78 pROC-1.18.2/pROC/R/roc.utils.percent.R | 64 pROC-1.18.2/pROC/R/smooth.R | 26 pROC-1.18.2/pROC/R/var.R | 18 pROC-1.18.2/pROC/README.md | 5 pROC-1.18.2/pROC/build/partial.rdb |binary pROC-1.18.2/pROC/inst/CITATION | 4 pROC-1.18.2/pROC/man/ci.auc.Rd | 2 pROC-1.18.2/pROC/man/ci.coords.Rd | 2 pROC-1.18.2/pROC/man/ci.se.Rd | 2 pROC-1.18.2/pROC/man/ci.sp.Rd | 2 pROC-1.18.2/pROC/man/ci.thresholds.Rd | 2 pROC-1.18.2/pROC/man/coords.Rd | 13 pROC-1.18.2/pROC/man/cov.Rd | 2 pROC-1.18.2/pROC/man/pROC-package.Rd | 2 pROC-1.18.2/pROC/man/roc.test.Rd | 2 pROC-1.18.2/pROC/man/smooth.Rd | 5 pROC-1.18.2/pROC/man/var.Rd | 2 pROC-1.18.2/pROC/src/RcppExports.cpp | 5 pROC-1.18.2/pROC/tests/testthat/_snaps |only pROC-1.18.2/pROC/tests/testthat/helper-expect_equal_roc.R | 2 pROC-1.18.2/pROC/tests/testthat/helper-roc-expected.R | 1630 +++++----- pROC-1.18.2/pROC/tests/testthat/helper-roc.utils-expected.R | 4 pROC-1.18.2/pROC/tests/testthat/print_output/ndka_formula_attached |only pROC-1.18.2/pROC/tests/testthat/print_output/ndka_formula_var |only pROC-1.18.2/pROC/tests/testthat/print_output/ndka_formula_var_attached |only pROC-1.18.2/pROC/tests/testthat/test-plot.R | 2 pROC-1.18.2/pROC/tests/testthat/test-print.R | 19 pROC-1.18.2/pROC/tests/testthat/test-roc.R | 31 pROC-1.18.2/pROC/tests/testthat/test-roc.utils.R | 66 pROC-1.18.2/pROC/tests/testthat/test-roc.utils.percent.R | 40 55 files changed, 1361 insertions(+), 1197 deletions(-)
Title: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis
Tests
Description: Compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 80 classes of statistical models in R. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference.
Author: Vincent Arel-Bundock [aut, cre, cph]
,
Marcio Augusto Diniz [ctb] ,
Noah Greifer [ctb] ,
Etienne Bacher [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.11.1 dated 2023-03-31 and 0.11.2 dated 2023-05-13
DESCRIPTION | 24 ++++----- MD5 | 98 +++++++++++++++++++------------------- NAMESPACE | 10 +++ NEWS.md | 20 +++++++ R/bootstrap_boot.R | 2 R/bootstrap_rsample.R | 2 R/comparisons.R | 21 +++++--- R/complete_levels.R | 5 + R/datagrid.R | 5 + R/get_contrasts.R | 11 +++- R/get_model_matrix.R | 15 ++++- R/hypotheses.R | 3 - R/imputation.R | 3 - R/marginal_means.R | 25 ++++----- R/methods.R |only R/methods_crch.R | 2 R/predictions.R | 31 +++++++----- R/recall.R | 2 R/sanitize_newdata.R | 6 -- R/sanitize_variables.R | 3 - R/sanity.R | 6 ++ R/slopes.R | 3 - R/utils.R | 10 +++ inst/WORDLIST | 1 inst/tinytest/test-bugfix.R | 3 - inst/tinytest/test-by.R | 18 +++--- inst/tinytest/test-datagrid.R | 39 +++++++++++++++ inst/tinytest/test-df.R | 7 ++ inst/tinytest/test-equivalence.R | 5 + inst/tinytest/test-inferences.R | 11 +++- inst/tinytest/test-pkg-brms.R | 7 ++ inst/tinytest/test-pkg-glmmTMB.R | 2 inst/tinytest/test-pkg-lme4.R | 1 inst/tinytest/test-pkg-ordinal.R | 2 inst/tinytest/test-pkg-speedglm.R | 2 inst/tinytest/test-predictions.R | 2 inst/tinytest/test-scope.R |only inst/tinytest/test-typical.R | 1 man/comparisons.Rd | 2 man/datagrid.Rd | 2 man/get_model_matrix.Rd | 4 - man/get_predict.Rd | 2 man/plot_cap.Rd | 2 man/plot_cco.Rd | 2 man/plot_cme.Rd | 2 man/plot_comparisons.Rd | 2 man/plot_predictions.Rd | 2 man/plot_slopes.Rd | 3 - man/predictions.Rd | 4 - man/sanitize_model_specific.Rd | 2 man/slopes.Rd | 3 - 51 files changed, 290 insertions(+), 150 deletions(-)
More information about marginaleffects at CRAN
Permanent link
Title: 'CARTOColors' Palettes
Description: Provides color schemes for maps and other graphics
designed by 'CARTO' as described at <https://carto.com/carto-colors/>.
It includes four types of palettes: aggregation, diverging, qualitative,
and quantitative.
Author: Jakub Nowosad [aut, cre]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between rcartocolor versions 2.0.0 dated 2019-05-03 and 2.1.1 dated 2023-05-13
DESCRIPTION | 8 +-- MD5 | 52 ++++++++++++++++-------- R/carto_pal.R | 37 +++++++++++++---- R/carto_scale.R | 4 - README.md | 57 ++++++++++++++++----------- data/metacartocolors.rda |binary inst/CITATION | 8 +-- man/carto_pal.Rd | 13 ++++-- man/carto_scale.Rd | 75 +++++++++++++++++++++++++----------- man/cartocolors.Rd | 6 +- man/figures/README-example-1.png |binary man/figures/README-example3-1.png |binary man/figures/README-example4-1.png |binary man/figures/README-examplegg1-1.png |binary man/figures/README-examplegg2-1.png |binary man/metacartocolors.Rd | 6 +- tests/figs |only tests/testthat/test-display.R | 2 tests/testthat/test-palettes.R | 4 - 19 files changed, 184 insertions(+), 88 deletions(-)
Title: Check Color Palettes for Problems with Color Vision Deficiency
Description: Compare color palettes with simulations of color vision deficiencies - deuteranopia, protanopia, and tritanopia.
It includes calculation of distances between colors, and creating summaries of differences between a color palette and simulations of color vision deficiencies.
This work was inspired by the blog post at <http://www.vis4.net/blog/2018/02/automate-colorblind-checking/>.
Author: Jakub Nowosad [aut, cre]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between colorblindcheck versions 1.0.0 dated 2021-09-09 and 1.0.2 dated 2023-05-13
DESCRIPTION | 11 - MD5 | 18 +- README.md | 111 ++++++------ build/vignette.rds |binary inst/CITATION | 6 inst/doc/intro-to-colorblindcheck.Rmd | 8 inst/doc/intro-to-colorblindcheck.html | 275 +++++++++++++++++-------------- man/colorblindcheck-package.Rd | 6 man/figures/README-unnamed-chunk-2-1.png |binary vignettes/intro-to-colorblindcheck.Rmd | 8 10 files changed, 239 insertions(+), 204 deletions(-)
More information about colorblindcheck at CRAN
Permanent link
Title: Joint Quantile and Expected Shortfall Regression
Description: Simultaneous modeling of the quantile and the expected shortfall of a response variable given
a set of covariates, see Dimitriadis and Bayer (2019) <doi:10.1214/19-EJS1560>.
Author: Sebastian Bayer [aut, cre],
Timo Dimitriadis [aut]
Maintainer: Sebastian Bayer <sebastian.bayer@uni-konstanz.de>
Diff between esreg versions 0.6.1 dated 2023-03-22 and 0.6.2 dated 2023-05-13
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 1 + NEWS.md | 17 ++++++++++------- R/esreg.R | 3 ++- R/loss_functions.R | 2 +- 6 files changed, 23 insertions(+), 18 deletions(-)
Title: Exploratory Data Analysis for the 'spatstat' Family
Description: Functionality for exploratory data analysis and nonparametric analysis of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Warick Brown [cph],
Achmad Choiruddin [ctb],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb, cph],
Julian Gi [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.explore versions 3.1-0 dated 2023-03-13 and 3.2-1 dated 2023-05-13
spatstat.explore-3.1-0/spatstat.explore/R/progress.R |only spatstat.explore-3.1-0/spatstat.explore/man/range.fv.Rd |only spatstat.explore-3.2-1/spatstat.explore/DESCRIPTION | 21 spatstat.explore-3.2-1/spatstat.explore/MD5 | 144 ++-- spatstat.explore-3.2-1/spatstat.explore/NAMESPACE | 33 - spatstat.explore-3.2-1/spatstat.explore/NEWS | 93 ++ spatstat.explore-3.2-1/spatstat.explore/R/FGmultiInhom.R | 71 ++ spatstat.explore-3.2-1/spatstat.explore/R/Jinhom.R | 32 spatstat.explore-3.2-1/spatstat.explore/R/Jmulti.inhom.R |only spatstat.explore-3.2-1/spatstat.explore/R/Kmeasure.R | 16 spatstat.explore-3.2-1/spatstat.explore/R/Math.fasp.R |only spatstat.explore-3.2-1/spatstat.explore/R/Math.fv.R |only spatstat.explore-3.2-1/spatstat.explore/R/bw.CvL.R | 3 spatstat.explore-3.2-1/spatstat.explore/R/bw.CvL.adaptive.R | 1 spatstat.explore-3.2-1/spatstat.explore/R/bw.diggle.R | 1 spatstat.explore-3.2-1/spatstat.explore/R/bw.optim.R | 35 + spatstat.explore-3.2-1/spatstat.explore/R/bw.pcf.R | 1 spatstat.explore-3.2-1/spatstat.explore/R/bw.ppl.R | 5 spatstat.explore-3.2-1/spatstat.explore/R/cdftest.R | 7 spatstat.explore-3.2-1/spatstat.explore/R/density.ppp.R | 246 ++++--- spatstat.explore-3.2-1/spatstat.explore/R/densityfun.R | 6 spatstat.explore-3.2-1/spatstat.explore/R/envelope.R | 14 spatstat.explore-3.2-1/spatstat.explore/R/eval.fasp.R | 4 spatstat.explore-3.2-1/spatstat.explore/R/evaluatecovariates.R | 10 spatstat.explore-3.2-1/spatstat.explore/R/evidence.R | 18 spatstat.explore-3.2-1/spatstat.explore/R/exactppm.R | 33 - spatstat.explore-3.2-1/spatstat.explore/R/fasp.R | 10 spatstat.explore-3.2-1/spatstat.explore/R/fv.R | 39 - spatstat.explore-3.2-1/spatstat.explore/R/laslett.R | 8 spatstat.explore-3.2-1/spatstat.explore/R/pcfmulti.R | 62 + spatstat.explore-3.2-1/spatstat.explore/R/plot.fv.R | 4 spatstat.explore-3.2-1/spatstat.explore/R/progressplots.R |only spatstat.explore-3.2-1/spatstat.explore/R/relrisk.R | 196 ++++- spatstat.explore-3.2-1/spatstat.explore/R/rhohat.R | 9 spatstat.explore-3.2-1/spatstat.explore/R/smooth.ppp.R | 328 ++++++++-- spatstat.explore-3.2-1/spatstat.explore/R/smoothfun.R | 5 spatstat.explore-3.2-1/spatstat.explore/R/spatialcdf.R | 8 spatstat.explore-3.2-1/spatstat.explore/R/sysdata.rda |binary spatstat.explore-3.2-1/spatstat.explore/inst/doc/packagesizes.txt | 2 spatstat.explore-3.2-1/spatstat.explore/man/Extract.fasp.Rd | 14 spatstat.explore-3.2-1/spatstat.explore/man/FmultiInhom.Rd | 8 spatstat.explore-3.2-1/spatstat.explore/man/Gcross.inhom.Rd |only spatstat.explore-3.2-1/spatstat.explore/man/Gdot.inhom.Rd |only spatstat.explore-3.2-1/spatstat.explore/man/GmultiInhom.Rd | 14 spatstat.explore-3.2-1/spatstat.explore/man/Jcross.Rd | 3 spatstat.explore-3.2-1/spatstat.explore/man/Jcross.inhom.Rd |only spatstat.explore-3.2-1/spatstat.explore/man/Jdot.Rd | 3 spatstat.explore-3.2-1/spatstat.explore/man/Jdot.inhom.Rd |only spatstat.explore-3.2-1/spatstat.explore/man/Jmulti.inhom.Rd |only spatstat.explore-3.2-1/spatstat.explore/man/Kdot.inhom.Rd | 8 spatstat.explore-3.2-1/spatstat.explore/man/Kmulti.inhom.Rd | 2 spatstat.explore-3.2-1/spatstat.explore/man/Math.fasp.Rd |only spatstat.explore-3.2-1/spatstat.explore/man/Math.fv.Rd |only spatstat.explore-3.2-1/spatstat.explore/man/Smooth.ppp.Rd | 32 spatstat.explore-3.2-1/spatstat.explore/man/berman.test.Rd | 4 spatstat.explore-3.2-1/spatstat.explore/man/bw.CvL.Rd | 14 spatstat.explore-3.2-1/spatstat.explore/man/bw.CvL.adaptive.Rd | 23 spatstat.explore-3.2-1/spatstat.explore/man/bw.diggle.Rd | 9 spatstat.explore-3.2-1/spatstat.explore/man/bw.optim.object.Rd |only spatstat.explore-3.2-1/spatstat.explore/man/bw.pcf.Rd | 9 spatstat.explore-3.2-1/spatstat.explore/man/bw.relrisk.Rd | 13 spatstat.explore-3.2-1/spatstat.explore/man/bw.smoothppp.Rd | 9 spatstat.explore-3.2-1/spatstat.explore/man/cdf.test.Rd | 4 spatstat.explore-3.2-1/spatstat.explore/man/density.ppp.Rd | 34 + spatstat.explore-3.2-1/spatstat.explore/man/fv.Rd | 16 spatstat.explore-3.2-1/spatstat.explore/man/macros/defns.Rd | 1 spatstat.explore-3.2-1/spatstat.explore/man/pcfcross.Rd | 11 spatstat.explore-3.2-1/spatstat.explore/man/pcfdot.Rd | 11 spatstat.explore-3.2-1/spatstat.explore/man/pcfmulti.Rd | 9 spatstat.explore-3.2-1/spatstat.explore/man/relrisk.ppp.Rd | 42 + spatstat.explore-3.2-1/spatstat.explore/man/rhohat.Rd | 6 spatstat.explore-3.2-1/spatstat.explore/man/spatialcdf.Rd | 2 spatstat.explore-3.2-1/spatstat.explore/man/spatstat.explore-internal.Rd | 31 spatstat.explore-3.2-1/spatstat.explore/man/thresholdCI.Rd | 3 spatstat.explore-3.2-1/spatstat.explore/man/thresholdSelect.Rd | 7 spatstat.explore-3.2-1/spatstat.explore/src/denspt.c | 94 +- spatstat.explore-3.2-1/spatstat.explore/src/densptcross.c | 92 +- spatstat.explore-3.2-1/spatstat.explore/src/init.c | 16 spatstat.explore-3.2-1/spatstat.explore/src/proto.h | 24 spatstat.explore-3.2-1/spatstat.explore/tests/testsD.R | 33 - 80 files changed, 1517 insertions(+), 549 deletions(-)
More information about spatstat.explore at CRAN
Permanent link
Title: Make 'PICRUSt2' Output Analysis and Visualization Easier
Description: Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <arXiv:2303.10388>.
Author: Chen Yang [aut, cre],
Liangliang Zhang [aut]
Maintainer: Chen Yang <cafferychen7850@gmail.com>
Diff between ggpicrust2 versions 1.6.3 dated 2023-05-07 and 1.6.5 dated 2023-05-13
DESCRIPTION | 6 +- MD5 | 8 +-- NEWS.md | 4 + R/pathway_errorbar.R | 1 README.md | 109 ++++++++++++++++++++++++++++++++++++++++++++++++--- 5 files changed, 115 insertions(+), 13 deletions(-)
Title: Dependency-Free String Operations
Description: Provides drop-in replacements for functions from the
'stringr' package, with the same user interface. These functions have
no external dependencies and can be copied directly into your package
code using the 'staticimports' package.
Author: Alexander Rossell Hayes [aut, cre, cph]
,
Eli Pousson [ctb]
and str_split functions),
Hadley Wickham [ctb, cph] ,
RStudio [cph]
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between stringstatic versions 0.1.0 dated 2023-03-09 and 0.1.1 dated 2023-05-13
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/str_split.R | 36 ++++++++++++++++++++++++++++++++---- README.md | 9 ++++++++- tests/testthat/test-str_split.R | 12 ++++++++++++ 6 files changed, 64 insertions(+), 13 deletions(-)
Title: Elastic Functional Data Analysis
Description: Performs alignment, PCA, and modeling of multidimensional and
unidimensional functions using the square-root velocity framework
(Srivastava et al., 2011 <arXiv:1103.3817> and Tucker et al., 2014
<DOI:10.1016/j.csda.2012.12.001>). This framework allows for elastic
analysis of functional data through phase and amplitude separation.
Author: J. Derek Tucker [aut, cre] ,
Aymeric Stamm [ctb]
Maintainer: J. Derek Tucker <jdtuck@sandia.gov>
Diff between fdasrvf versions 2.0.1 dated 2023-03-03 and 2.0.2 dated 2023-05-13
DESCRIPTION | 8 MD5 | 79 NEWS.md | 9 R/SqrtMean.R | 2 R/SqrtMedian.R | 2 R/curve_functions.R | 33 R/curve_srvf_align.R | 14 R/elastic.distance.R | 13 R/elastic_lpcr_regression.R | 2 R/gauss_model.R | 2 R/geometry.R | 8 R/horizFPCA.R | 2 R/invertGamma.R | 2 R/joint_gauss_model.R | 2 R/jointfPCA.R | 2 R/optimum.reparam.R | 6 R/plot.fdawarp.R | 8 R/tolerance.R | 2 README.md | 2 data/simu_warp.rda |binary data/simu_warp_median.rda |binary man/SqrtMean.Rd | 2 man/SqrtMedian.Rd | 2 man/curve_srvf_align.Rd | 4 man/elastic.lpcr.regression.Rd | 2 man/invertGamma.Rd | 2 man/optimum.reparam.Rd | 5 src/Makevars | 2 src/Makevars.win | 2 src/fdasrsf/DynamicProgrammingQ2.cpp | 12 src/fdasrsf/DynamicProgrammingQ2.h | 6 src/fdasrsf/dp_grid.cpp | 327 +- src/fdasrsf/dp_grid.h | 95 src/fdasrsf/dp_nbhd.cpp |only src/fdasrsf/dp_nbhd.h | 72 src/wrapper.cpp | 5 tests/testthat.R | 1 tests/testthat/_snaps/align-fpca.md | 3728 +++++++++++++++++----------------- tests/testthat/_snaps/boxplot.md | 534 ++-- tests/testthat/_snaps/kmeans.md | 2314 ++++++++++----------- tests/testthat/_snaps/time-warping.md | 2522 +++++++++++------------ 41 files changed, 4875 insertions(+), 4960 deletions(-)
Title: Empirical Bayesian Lasso and Elastic Net Methods for Generalized
Linear Models
Description: Provides empirical Bayesian lasso and elastic net algorithms for variable selection and effect estimation. Key features include sparse variable selection and effect estimation via generalized linear regression models, high dimensionality with p>>n, and significance test for nonzero effects. This package outperforms other popular methods such as lasso and elastic net methods in terms of power of detection, false discovery rate, and power of detecting grouping effects. Please reference its use as A Huang and D Liu (2016) <doi: 10.1093/bioinformatics/btw143>.
Author: Anhui Huang, Dianting Liu
Maintainer: Anhui Huang <anhuihuang@gmail.com>
Diff between EBglmnet versions 5.2 dated 2022-12-22 and 5.3 dated 2023-05-13
EBglmnet-5.2/EBglmnet/inst/doc/EBglmnet_intro.html |only EBglmnet-5.3/EBglmnet/DESCRIPTION | 8 EBglmnet-5.3/EBglmnet/MD5 | 12 - EBglmnet-5.3/EBglmnet/build/vignette.rds |binary EBglmnet-5.3/EBglmnet/inst/doc/EBglmnet_intro.R | 240 ++++++++++----------- EBglmnet-5.3/EBglmnet/inst/doc/EBglmnet_intro.Rmd | 54 ++-- EBglmnet-5.3/EBglmnet/inst/doc/EBglmnet_intro.pdf |only EBglmnet-5.3/EBglmnet/vignettes/EBglmnet_intro.Rmd | 54 ++-- 8 files changed, 192 insertions(+), 176 deletions(-)
Title: Store and Operate with Arbitrarily Large Integers
Description: Multi-precision library that allows to store and operate with arbitrarily big integers without
loss of precision. It includes a large list of tools to work with them, like:
- Arithmetic and logic operators
- Modular-arithmetic operators
- Computer Number Theory utilities
- Probabilistic primality tests
- Factorization algorithms
- Random generators of diferent types of integers.
Author: Javier Leiva Cuadrado
Maintainer: Javier Leiva Cuadrado <jleivacuadrado@gmail.com>
Diff between VeryLargeIntegers versions 0.1.9 dated 2022-12-01 and 0.2.1 dated 2023-05-13
VeryLargeIntegers-0.1.9/VeryLargeIntegers/R/pi.R |only VeryLargeIntegers-0.2.1/VeryLargeIntegers/DESCRIPTION | 8 - VeryLargeIntegers-0.2.1/VeryLargeIntegers/MD5 | 60 +++++----- VeryLargeIntegers-0.2.1/VeryLargeIntegers/NAMESPACE | 10 + VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/Euler.R | 2 VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/Fibonacci.R | 4 VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/Jacobi.R | 6 - VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/Legendre.R | 6 - VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/Pi.R |only VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/arithmeticlogic.R | 46 +++---- VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/binom.R | 6 - VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/count1bits.R | 2 VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/divisor.R | 2 VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/divp2.R | 2 VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/exteuclid.R | 6 - VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/factorial.R | 2 VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/factors.R | 4 VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/gcd.R | 6 - VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/lcmul.R | 6 - VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/logarithms.R | 20 +-- VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/modarithmeticop.R | 56 ++++----- VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/nextprime.R | 2 VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/perfectpow.R | 4 VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/primality.R | 6 - VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/primes.R | 2 VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/primescount.R | 2 VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/random.R | 16 +- VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/roots.R | 18 +-- VeryLargeIntegers-0.2.1/VeryLargeIntegers/R/vli.R | 8 + VeryLargeIntegers-0.2.1/VeryLargeIntegers/man/Pi.Rd | 24 ++-- VeryLargeIntegers-0.2.1/VeryLargeIntegers/man/roots.Rd | 4 VeryLargeIntegers-0.2.1/VeryLargeIntegers/man/vli.Rd | 3 32 files changed, 177 insertions(+), 166 deletions(-)
More information about VeryLargeIntegers at CRAN
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Title: A Collection of ML Tools for Conservation Research
Description: Functions required to classify subjects within camera trap field data. The package can handle both images and videos. The authors recommend a two-step approach using Microsoft's 'MegaDector' model and then a second model trained on the classes of interest.
Author: Kyra Swanson [aut, cre] ,
Mathias Tobler [aut]
Maintainer: Kyra Swanson <tswanson@sdzwa.org>
Diff between animl versions 1.0.0 dated 2022-03-23 and 1.1.0 dated 2023-05-13
animl-1.0.0/animl/R/checkMD.R |only animl-1.0.0/animl/R/classifyMD.R |only animl-1.0.0/animl/R/classifySequence.R |only animl-1.0.0/animl/R/classifySpecies.R |only animl-1.0.0/animl/R/convertMDresults.R |only animl-1.0.0/animl/R/decodeImage.R |only animl-1.0.0/animl/R/extractFiles.R |only animl-1.0.0/animl/R/generateCrops.R |only animl-1.0.0/animl/R/loadMDmodel.R |only animl-1.0.0/animl/R/multispecies.R |only animl-1.0.0/animl/R/resize_pad.R |only animl-1.0.0/animl/build |only animl-1.0.0/animl/inst |only animl-1.0.0/animl/man/classifyImageMD.Rd |only animl-1.0.0/animl/man/classifyImagesBatchMD.Rd |only animl-1.0.0/animl/man/classifySequence.Rd |only animl-1.0.0/animl/man/classifyVideo.Rd |only animl-1.0.0/animl/man/convertMDResultsSimple.Rd |only animl-1.0.0/animl/man/convertMDresults.Rd |only animl-1.0.0/animl/man/decode_img_full.Rd |only animl-1.0.0/animl/man/decode_img_resize.Rd |only animl-1.0.0/animl/man/extractAllBoxes.Rd |only animl-1.0.0/animl/man/extractAllBoxesFromFlat.Rd |only animl-1.0.0/animl/man/extractFiles.Rd |only animl-1.0.0/animl/man/multispecies.Rd |only animl-1.0.0/animl/man/parseMDsimple.Rd |only animl-1.0.0/animl/man/plotBoxesFromFlat.Rd |only animl-1.0.0/animl/man/resize_pad.Rd |only animl-1.0.0/animl/vignettes |only animl-1.1.0/animl/DESCRIPTION | 15 animl-1.1.0/animl/LICENSE | 4 animl-1.1.0/animl/MD5 | 114 ++-- animl-1.1.0/animl/NAMESPACE | 65 +- animl-1.1.0/animl/R/applyPredictions.R |only animl-1.1.0/animl/R/bestGuess.R |only animl-1.1.0/animl/R/convertCoordinates.R |only animl-1.1.0/animl/R/dataManagement.R |only animl-1.1.0/animl/R/detectMD.R |only animl-1.1.0/animl/R/extractBoxes.R | 565 +++++++++++---------- animl-1.1.0/animl/R/fileManagement.R |only animl-1.1.0/animl/R/generators.R |only animl-1.1.0/animl/R/imagesFromVideos.R | 200 ++++--- animl-1.1.0/animl/R/loadMDModel.R |only animl-1.1.0/animl/R/parseMD.R |only animl-1.1.0/animl/R/parseMDjson.R | 118 +--- animl-1.1.0/animl/R/pipeline.R |only animl-1.1.0/animl/R/plotBoxes.R | 138 ++--- animl-1.1.0/animl/R/predictSpecies.R |only animl-1.1.0/animl/R/sequenceClassification.R |only animl-1.1.0/animl/R/setupDirectory.R |only animl-1.1.0/animl/R/splitData.R |only animl-1.1.0/animl/R/symlink.R |only animl-1.1.0/animl/R/testMD.R |only animl-1.1.0/animl/R/updateResults.R |only animl-1.1.0/animl/R/utils-pipe.R |only animl-1.1.0/animl/README.md | 116 ++++ animl-1.1.0/animl/man/ImageGenerator.Rd |only animl-1.1.0/animl/man/ImageGeneratorSize.Rd |only animl-1.1.0/animl/man/animl.Rd |only animl-1.1.0/animl/man/applyPredictions.Rd |only animl-1.1.0/animl/man/bestGuess.Rd |only animl-1.1.0/animl/man/buildFileManifest.Rd |only animl-1.1.0/animl/man/checkFile.Rd |only animl-1.1.0/animl/man/convertCoordinates.Rd |only animl-1.1.0/animl/man/cropImageGenerator.Rd |only animl-1.1.0/animl/man/cropImageTrainGenerator.Rd |only animl-1.1.0/animl/man/detectObject.Rd |only animl-1.1.0/animl/man/detectObjectBatch.Rd |only animl-1.1.0/animl/man/extractBoxes.Rd | 103 ++- animl-1.1.0/animl/man/extractBoxesFromFlat.Rd | 92 +-- animl-1.1.0/animl/man/extractBoxesFromMD.Rd |only animl-1.1.0/animl/man/getAnimals.Rd |only animl-1.1.0/animl/man/getEmpty.Rd |only animl-1.1.0/animl/man/imageAugmentationColor.Rd |only animl-1.1.0/animl/man/imageAugmentationGeometry.Rd |only animl-1.1.0/animl/man/imageLabel.Rd |only animl-1.1.0/animl/man/imageLabelCrop.Rd |only animl-1.1.0/animl/man/imagesFromVideos.Rd | 90 +-- animl-1.1.0/animl/man/loadData.Rd |only animl-1.1.0/animl/man/loadImage.Rd |only animl-1.1.0/animl/man/loadImageResize.Rd |only animl-1.1.0/animl/man/loadImageResizeCrop.Rd |only animl-1.1.0/animl/man/loadImageResizeSize.Rd |only animl-1.1.0/animl/man/loadMDModel.Rd | 46 - animl-1.1.0/animl/man/parseMD.Rd |only animl-1.1.0/animl/man/parseMDjson.Rd | 48 - animl-1.1.0/animl/man/pipe.Rd |only animl-1.1.0/animl/man/plotBoxes.Rd | 54 +- animl-1.1.0/animl/man/predictSpecies.Rd |only animl-1.1.0/animl/man/processYOLO5.Rd |only animl-1.1.0/animl/man/resizePad.Rd |only animl-1.1.0/animl/man/saveData.Rd |only animl-1.1.0/animl/man/sequenceClassification.Rd |only animl-1.1.0/animl/man/setupDirectory.Rd |only animl-1.1.0/animl/man/symUnlink.Rd |only animl-1.1.0/animl/man/symlinkMD.Rd |only animl-1.1.0/animl/man/symlinkSpecies.Rd |only animl-1.1.0/animl/man/testMD.Rd |only animl-1.1.0/animl/man/updateResults.Rd |only 99 files changed, 1009 insertions(+), 759 deletions(-)