Title: Event Prediction
Description: Predicts enrollment and events at the design stage using assumed enrollment and treatment-specific time-to-event models, or at the analysis stage using blinded data and specified enrollment and time-to-event models through simulations.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between eventPred versions 0.1.2 dated 2023-05-05 and 0.1.3 dated 2023-05-15
DESCRIPTION | 12 +++---- MD5 | 36 ++++++++++----------- NAMESPACE | 4 ++ NEWS.md | 6 +++ R/data.R | 6 +++ R/eventPred-package.R | 30 +++++++++++++---- R/fitEvent.R | 52 +++++++++++++++++++++++++++--- R/getPrediction.R | 79 ++++++++++++++++++++++++++++------------------- R/predictEnrollment.R | 2 - R/predictEvent.R | 25 +++++++++++++- R/summarizeObserved.R | 3 - man/eventPred-package.Rd | 29 ++++++++++++----- man/finalData.Rd | 2 + man/fitEvent.Rd | 27 +++++++++++++--- man/getPrediction.Rd | 17 +++++++++- man/interimData1.Rd | 2 + man/interimData2.Rd | 2 + man/predictEnrollment.Rd | 2 - man/predictEvent.Rd | 4 +- 19 files changed, 249 insertions(+), 91 deletions(-)
Title: Semi-Parametric Variance Regression
Description: Methods for fitting semi-parametric mean and variance models, with normal or censored data. Extended to allow a regression in the location, scale and shape parameters, and further for multiple regression in each.
Author: Kristy Robledo [aut, cre],
Ian Marschner [ths]
Maintainer: Kristy Robledo <robledo.kristy@gmail.com>
Diff between VarReg versions 1.0.2 dated 2018-04-24 and 2.0 dated 2023-05-15
DESCRIPTION | 11 ++++--- MD5 | 47 ++++++++++++++++++++------------- NAMESPACE | 2 + R/VarReg.R | 4 ++ R/censloop_em.R | 8 ++--- R/lssVarReg.R | 8 ++++- R/lssVarReg_multi.R |only R/semiVarReg.R | 1 R/semiVarReg_multi.R |only README.md |only inst |only man/VarReg.Rd | 5 ++- man/censlinVarReg.Rd | 15 ++++++++-- man/censloop_em.Rd | 14 ++++++++- man/figures |only man/linVarReg.Rd | 10 +++++-- man/loop_lss.Rd | 16 +++++++++-- man/lssVarReg.Rd | 27 ++++++++++++++---- man/lssVarReg.multi.Rd |only man/mcycle.Rd | 6 ++-- man/plotVarReg.Rd | 13 +++++++-- man/seVarReg.Rd | 11 ++++++- man/searchVarReg.Rd | 16 +++++++++-- man/semiVarReg.Rd | 20 ++++++++++---- man/semiVarReg.multi.Rd |only man/vcf.Rd | 6 ++-- tests/testthat/test_lssvarreg_multi.R |only tests/testthat/test_semivarreg_multi.R |only 28 files changed, 177 insertions(+), 63 deletions(-)
Title: Improved Inference in Multiple Comparison Procedure – Modelling
Description: Implementation of Multiple Comparison Procedures with Modeling
(MCP-Mod) procedure with bias-corrected estimators and second-order
covariance matrices as described in Diniz, Gallardo and Magalhaes (2023)
<doi:10.1002/pst.2303>.
Author: Marcio Diniz [aut],
Diego Gallardo [aut, cre],
Tiago Magalhaes [aut]
Maintainer: Diego Gallardo <diego.gallardo@uda.cl>
Diff between MCPModBC versions 1.0 dated 2023-01-23 and 1.1 dated 2023-05-15
DESCRIPTION | 12 ++++++------ MD5 | 7 ++++--- NEWS.md |only R/var_cox.R | 2 +- R/var_mle2.R | 2 +- 5 files changed, 12 insertions(+), 11 deletions(-)
Title: The Induced Smoothed Lasso
Description: An implementation of the induced smoothing (IS) idea to lasso regularization models to allow estimation and inference on the model coefficients (currently hypothesis testing only). Linear, logistic, Poisson and gamma regressions with several link functions are implemented. The algorithm is described in the original paper; see <doi:10.1177/0962280219842890> and discussed in a tutorial <doi:10.13140/RG.2.2.16360.11521>.
Author: Gianluca Sottile [aut, cre],
Giovanna Cilluffo [aut, ctb],
Vito MR Muggeo [aut, ctb]
Maintainer: Gianluca Sottile <gianluca.sottile@unipa.it>
Diff between islasso versions 1.5.0 dated 2023-05-08 and 1.5.1 dated 2023-05-15
DESCRIPTION | 8 +- MD5 | 18 ++--- NEWS | 5 + R/auxiliary.R | 4 - R/islasso.R | 139 ++++++++++++++++++++--------------------- R/islasso.path.R | 166 ++++++++++++++++++++++++++++++++++--------------- man/islasso-package.Rd | 4 - src/islasso.h | 4 - src/islasso2.f90 | 25 +++++-- src/islasso_glm.f90 | 27 +++++-- 10 files changed, 246 insertions(+), 154 deletions(-)
Title: Visualisation, Exploration, and Web Communication of
Archaeological Spatial Data
Description: An R 'Shiny' application for the visualisation, interactive exploration, and web communication of archaeological excavation data. It includes interactive 3D and 2D visualisations, generation of cross sections and maps of the remains, basic spatial analysis methods (convex hull, regression surfaces, 2D kernel density estimation), and excavation timeline visualisation. 'archeoViz' can be used locally or deployed on a server, either with interactive input of data or with a static data set.
Author: Sebastien Plutniak [aut, cre] ,
Renata Araujo [ctb] ,
Sara Giardino [ctb]
Maintainer: Sebastien Plutniak <sebastien.plutniak@posteo.net>
Diff between archeoViz versions 1.0.0 dated 2023-02-27 and 1.1.1 dated 2023-05-15
DESCRIPTION | 14 - MD5 | 62 ++--- NAMESPACE | 3 NEWS.md | 23 + R/app_server.R | 340 ++++++++++++++++++++--------- R/app_ui.R | 47 +++- R/archeoViz.R | 4 R/coordinates_sampling.R | 3 R/demo_objects_data.R | 45 ++- R/do_by_layer_table.R | 14 + R/do_by_variable_table.R | 11 R/do_objects_dataset.R | 19 + R/do_refits_preprocessing.R | 5 R/do_section_plot.R | 11 R/do_selection_table.R |only R/do_timelinedata.R | 6 R/do_uncertain_lines.R |only R/do_uncertain_mesh_plans.R |only R/get_plan_coordinates.R |only R/get_volume_coordinates.R |only R/load_interface_terms.R | 168 +++++++++++--- TODO | 47 ++-- build/vignette.rds |binary inst/CITATION | 3 inst/doc/archeoViz-vignette-fr.Rmd | 44 +++ inst/doc/archeoViz-vignette-fr.html | 40 +++ inst/doc/archeoViz-vignette.Rmd | 50 +++- inst/doc/archeoViz-vignette.html | 48 +++- man/archeoViz.Rd | 2 tests/testthat/test.coordinates_sampling.R | 6 tests/testthat/test.demo_objects_data.R | 2 tests/testthat/test.do_objects_dataset.R | 12 - tests/testthat/test.do_selection_table.R |only vignettes/archeoViz-vignette-fr.Rmd | 44 +++ vignettes/archeoViz-vignette.Rmd | 50 +++- 35 files changed, 842 insertions(+), 281 deletions(-)
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'DDIwR', 'QCA' and 'venn'.
Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts
information (set names, set values) from those expressions. Other functions
perform various other checks if possibly numeric (even if all numbers reside
in a character vector) and coerce to numeric, or check if the numbers are
whole. It also offers, among many others, a highly versatile recoding
routine and some more flexible alternatives to the base function 'with()'
and 'within()'.
SOP simplification functions in this package use related minimization from
package 'QCA', which is recommended to be installed despite not being listed
in the Imports field, due to circular dependency issues.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.31 dated 2023-03-02 and 0.32 dated 2023-05-15
admisc-0.31/admisc/man/scan.clipboard.Rd |only admisc-0.32/admisc/DESCRIPTION | 6 +-- admisc-0.32/admisc/MD5 | 31 +++++++++--------- admisc-0.32/admisc/NAMESPACE | 6 +++ admisc-0.32/admisc/R/dimnames.R |only admisc-0.32/admisc/R/equality.R | 6 ++- admisc-0.32/admisc/R/print.R | 3 + admisc-0.32/admisc/R/recode.R | 21 ++++++++---- admisc-0.32/admisc/R/scan.clipboard.R | 2 - admisc-0.32/admisc/R/string.R | 2 - admisc-0.32/admisc/R/using.R | 14 +++++++- admisc-0.32/admisc/R/write.clipboard.R |only admisc-0.32/admisc/build/partial.rdb |binary admisc-0.32/admisc/inst/ChangeLog | 4 ++ admisc-0.32/admisc/man/admisc_package.Rd | 4 +- admisc-0.32/admisc/man/clipboard.Rd |only admisc-0.32/admisc/man/dimnames.Rd |only admisc-0.32/admisc/man/recode.Rd | 43 ++++++++++++++----------- admisc-0.32/admisc/src/admisc.c | 53 +++++++++++++++++++++++++++++-- 19 files changed, 141 insertions(+), 54 deletions(-)
Title: Estimation and Additional Tools for Alternative Shared Frailty
Models
Description: Provide estimation and data generation tools for some new multivariate frailty models.
This version includes the gamma, inverse Gaussian, weighted Lindley and Birnbaum-Saunders
as the distribution for the frailty terms.
For the basal model, it is considered a parametric approach based on the exponential,
Weibull and the piecewise exponential distributions as well as a semiparametric approach.
For details, see Gallardo and Bourguignon (2022) <arXiv:2206.12973>.
Author: Diego Gallardo [aut, cre],
Marcelo Bourguignon [aut]
Maintainer: Diego Gallardo <diego.gallardo@uda.cl>
Diff between extrafrail versions 1.5 dated 2023-04-05 and 1.6 dated 2023-05-15
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ R/summary.extrafrail.R | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Embedded Conic Solver in R
Description: R interface to the Embedded COnic Solver (ECOS), an efficient
and robust C library for convex problems. Conic and equality
constraints can be specified in addition to integer and
boolean variable constraints for mixed-integer problems. This
R interface is inspired by the python interface and has
similar calling conventions.
Author: Anqi Fu [aut],
Balasubramanian Narasimhan [aut, cre],
Florian Schwendinger [ctb],
Martin Maechler [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Diff between ECOSolveR versions 0.5.4 dated 2021-01-14 and 0.5.5 dated 2023-05-15
DESCRIPTION | 10 MD5 | 18 NEWS.md | 6 README.md | 12 build/vignette.rds |binary inst/doc/examples.html | 598 +++++++++++++-------- src/ecos-2954b2a-changes/ecos_bb/ecos_bb_preproc.c | 2 src/ecos-2954b2a-changes/include/ecos_bb.h | 2 src/ecos/ecos_bb/ecos_bb_preproc.c | 2 src/ecos/include/ecos_bb.h | 2 10 files changed, 412 insertions(+), 240 deletions(-)
Title: Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and
Other Metrics)
Description: Do Multi-Reader, Multi-Case (MRMC) analyses of data from imaging studies where clinicians (readers)
evaluate patient images (cases). What does this mean? ... Many imaging studies are designed
so that every reader reads every case in all modalities, a fully-crossed study. In this case, the
data is cross-correlated, and we consider the readers and cases to be cross-correlated random effects.
An MRMC analysis accounts for the variability and correlations from the readers and cases when
estimating variances, confidence intervals, and p-values. The functions in this package can treat
arbitrary study designs and studies with missing data, not just fully-crossed study designs.
The initial package analyzes the reader-average area under the receiver operating characteristic (ROC)
curve with U-statistics according to Gallas, Bandos, Samuelson,
and Wagner 2009 <doi:10.1080/03610920802610084>.
Additional functions analyze other endpoints with U-statistics (binary performance
and score differ [...truncated...]
Author: Brandon Gallas
Maintainer: Brandon Gallas <Brandon.Gallas@fda.hhs.gov>
Diff between iMRMC versions 1.2.4 dated 2022-02-24 and 1.2.5 dated 2023-05-15
iMRMC-1.2.4/iMRMC/inst/data-raw/simulationData |only iMRMC-1.2.5/iMRMC/DESCRIPTION | 10 +- iMRMC-1.2.5/iMRMC/MD5 | 28 ++---- iMRMC-1.2.5/iMRMC/NEWS.md | 74 +++++++++++++++++- iMRMC-1.2.5/iMRMC/R/iMRMC.R | 4 iMRMC-1.2.5/iMRMC/R/uStats.R | 4 iMRMC-1.2.5/iMRMC/man/createIMRMCdf.Rd | 4 iMRMC-1.2.5/iMRMC/man/doIMRMC.Rd | 2 iMRMC-1.2.5/iMRMC/man/extractPairedComparisonsBRBM.Rd | 4 iMRMC-1.2.5/iMRMC/man/extractPairedComparisonsWRBM.Rd | 4 iMRMC-1.2.5/iMRMC/tests/testthat/Rplots.pdf |binary 11 files changed, 97 insertions(+), 37 deletions(-)
Title: Automatic Unobserved Components and Other Time Series Models
Description: Comprehensive analysis and forecasting
of univariate time series using automatic
unobserved components models and algorithms.
Harvey, AC (1989) <doi:10.1017/CBO9781107049994>.
Pedregal DJ and Young PC (2002) <doi:10.1002/9780470996430>.
Durbin J and Koopman SJ (2012) <doi:10.1093/acprof:oso/9780199641178.001.0001>.
Hyndman RJ, Koehler AB, Ord JK, and Snyder RD (2008) <doi:10.1007/978-3-540-71918-2>.
Author: Diego J. Pedregal [aut, cre]
Maintainer: Diego J. Pedregal <Diego.Pedregal@uclm.es>
Diff between UComp versions 4.0.0 dated 2023-05-04 and 4.0.1 dated 2023-05-15
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- src/BSMmodel.h | 16 ++++++++-------- src/ETSmodel.h | 53 +++++++++++++++++++++++++++++++++++++++++++---------- 4 files changed, 59 insertions(+), 26 deletions(-)
Title: Nested Cross-Validation with 'glmnet' and 'caret'
Description: Implements nested k*l-fold cross-validation for lasso and elastic-net regularised linear models via the 'glmnet' package and other machine learning models via the 'caret' package. Cross-validation of 'glmnet' alpha mixing parameter and embedded fast filter functions for feature selection are provided. Described as double cross-validation by Stone (1977) <doi:10.1111/j.2517-6161.1977.tb01603.x>. Also implemented is a method using outer CV to measure unbiased model performance metrics when fitting Bayesian linear and logistic regression shrinkage models using the horseshoe prior over parameters to encourage a sparse model as described by Piironen & Vehtari (2017) <doi:10.1214/17-EJS1337SI>.
Author: Myles Lewis [aut, cre] ,
Athina Spiliopoulou [aut] ,
Katriona Goldmann [aut]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
Diff between nestedcv versions 0.6.1 dated 2023-04-16 and 0.6.2 dated 2023-05-15
DESCRIPTION | 6 +-- MD5 | 20 +++++------ NEWS.md | 4 ++ R/nest_filter_balance.R | 2 - R/shap.R | 3 - inst/doc/nestedcv.html | 76 ++++++++++++++++++++++---------------------- inst/doc/nestedcv_shap.R | 11 +----- inst/doc/nestedcv_shap.Rmd | 41 ++++++++++++----------- inst/doc/nestedcv_shap.html | 28 ++++++---------- man/pred_nestcv_glmnet.Rd | 3 - vignettes/nestedcv_shap.Rmd | 41 ++++++++++++----------- 11 files changed, 115 insertions(+), 120 deletions(-)
Title: Date-Time Types and Tools
Description: Provides a comprehensive library for date-time manipulations
using a new family of orthogonal date-time classes (durations, time
points, zoned-times, and calendars) that partition responsibilities so
that the complexities of time zones are only considered when they are
really needed. Capabilities include: date-time parsing, formatting,
arithmetic, extraction and updating of components, and rounding.
Author: Davis Vaughan [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between clock versions 0.6.1 dated 2022-07-18 and 0.7.0 dated 2023-05-15
clock-0.6.1/clock/src/check.h |only clock-0.6.1/clock/src/locale.h |only clock-0.7.0/clock/DESCRIPTION | 35 clock-0.7.0/clock/LICENSE | 2 clock-0.7.0/clock/MD5 | 355 +- clock-0.7.0/clock/NAMESPACE | 177 + clock-0.7.0/clock/NEWS.md | 89 clock-0.7.0/clock/R/arithmetic.R | 130 - clock-0.7.0/clock/R/calendar.R | 487 ++- clock-0.7.0/clock/R/check.R |only clock-0.7.0/clock/R/clock-codes.R | 2 clock-0.7.0/clock/R/clock-deprecated.R |only clock-0.7.0/clock/R/clock-labels.R | 10 clock-0.7.0/clock/R/clock-locale.R | 14 clock-0.7.0/clock/R/clock-package.R | 4 clock-0.7.0/clock/R/cpp11.R | 252 + clock-0.7.0/clock/R/date.R | 434 ++- clock-0.7.0/clock/R/duration.R | 316 +- clock-0.7.0/clock/R/getters.R | 108 clock-0.7.0/clock/R/gregorian-year-day.R | 292 +- clock-0.7.0/clock/R/gregorian-year-month-day.R | 348 ++ clock-0.7.0/clock/R/gregorian-year-month-weekday.R | 340 ++ clock-0.7.0/clock/R/import-standalone-obj-type.R |only clock-0.7.0/clock/R/import-standalone-types-check.R |only clock-0.7.0/clock/R/invalid.R | 21 clock-0.7.0/clock/R/iso-year-week-day.R | 310 +- clock-0.7.0/clock/R/limits.R |only clock-0.7.0/clock/R/naive-time.R | 107 clock-0.7.0/clock/R/posixt.R | 490 ++- clock-0.7.0/clock/R/precision.R | 51 clock-0.7.0/clock/R/quarterly-year-quarter-day.R | 297 +- clock-0.7.0/clock/R/rcrd.R | 41 clock-0.7.0/clock/R/setters.R | 64 clock-0.7.0/clock/R/strict.R | 14 clock-0.7.0/clock/R/sys-time.R | 62 clock-0.7.0/clock/R/time-point.R | 333 +- clock-0.7.0/clock/R/utils.R | 217 - clock-0.7.0/clock/R/week-year-week-day.R |only clock-0.7.0/clock/R/weekday.R | 81 clock-0.7.0/clock/R/zoned-time.R | 197 + clock-0.7.0/clock/R/zzz.R | 10 clock-0.7.0/clock/README.md | 151 - clock-0.7.0/clock/build/vignette.rds |binary clock-0.7.0/clock/inst/doc/clock.html | 704 ++--- clock-0.7.0/clock/inst/doc/faq.R | 34 clock-0.7.0/clock/inst/doc/faq.Rmd | 171 + clock-0.7.0/clock/inst/doc/faq.html | 743 +++-- clock-0.7.0/clock/inst/doc/recipes.R | 43 clock-0.7.0/clock/inst/doc/recipes.Rmd | 66 clock-0.7.0/clock/inst/doc/recipes.html | 1285 +++++----- clock-0.7.0/clock/man/Date-arithmetic.Rd | 3 clock-0.7.0/clock/man/as_date.Rd | 14 clock-0.7.0/clock/man/as_duration.Rd | 4 clock-0.7.0/clock/man/as_iso_year_week_day.Rd | 4 clock-0.7.0/clock/man/as_naive_time.Rd | 4 clock-0.7.0/clock/man/as_sys_time.Rd | 4 clock-0.7.0/clock/man/as_weekday.Rd | 4 clock-0.7.0/clock/man/as_year_day.Rd | 4 clock-0.7.0/clock/man/as_year_month_day.Rd | 4 clock-0.7.0/clock/man/as_year_month_weekday.Rd | 4 clock-0.7.0/clock/man/as_year_week_day.Rd |only clock-0.7.0/clock/man/calendar-boundary.Rd | 1 clock-0.7.0/clock/man/calendar-count-between.Rd | 1 clock-0.7.0/clock/man/calendar_group.Rd | 1 clock-0.7.0/clock/man/calendar_leap_year.Rd | 41 clock-0.7.0/clock/man/calendar_narrow.Rd | 1 clock-0.7.0/clock/man/calendar_spanning_seq.Rd |only clock-0.7.0/clock/man/calendar_widen.Rd | 1 clock-0.7.0/clock/man/clock-arith.Rd | 5 clock-0.7.0/clock/man/clock-arithmetic.Rd | 4 clock-0.7.0/clock/man/clock-codes.Rd | 2 clock-0.7.0/clock/man/clock-getters.Rd | 1 clock-0.7.0/clock/man/clock-package.Rd | 4 clock-0.7.0/clock/man/clock-setters.Rd | 1 clock-0.7.0/clock/man/date-time-zone.Rd |only clock-0.7.0/clock/man/date-zone.Rd | 61 clock-0.7.0/clock/man/date_build.Rd | 3 clock-0.7.0/clock/man/date_spanning_seq.Rd |only clock-0.7.0/clock/man/date_time_build.Rd | 3 clock-0.7.0/clock/man/date_time_info.Rd |only clock-0.7.0/clock/man/duration-arithmetic.Rd | 3 clock-0.7.0/clock/man/duration_spanning_seq.Rd |only clock-0.7.0/clock/man/figures/lifecycle-archived.svg |only clock-0.7.0/clock/man/figures/lifecycle-defunct.svg |only clock-0.7.0/clock/man/figures/lifecycle-deprecated.svg |only clock-0.7.0/clock/man/figures/lifecycle-experimental.svg |only clock-0.7.0/clock/man/figures/lifecycle-maturing.svg |only clock-0.7.0/clock/man/figures/lifecycle-questioning.svg |only clock-0.7.0/clock/man/figures/lifecycle-soft-deprecated.svg |only clock-0.7.0/clock/man/figures/lifecycle-stable.svg |only clock-0.7.0/clock/man/figures/lifecycle-superseded.svg |only clock-0.7.0/clock/man/figures/logo.png |binary clock-0.7.0/clock/man/is_year_week_day.Rd |only clock-0.7.0/clock/man/iso-year-week-day-arithmetic.Rd | 3 clock-0.7.0/clock/man/iso_year_week_day.Rd | 3 clock-0.7.0/clock/man/posixt-arithmetic.Rd | 53 clock-0.7.0/clock/man/seq.clock_year_week_day.Rd |only clock-0.7.0/clock/man/time-point-arithmetic.Rd | 3 clock-0.7.0/clock/man/time-point-rounding.Rd | 10 clock-0.7.0/clock/man/time_point_spanning_seq.Rd |only clock-0.7.0/clock/man/weekday-arithmetic.Rd | 3 clock-0.7.0/clock/man/year-day-arithmetic.Rd | 3 clock-0.7.0/clock/man/year-month-day-arithmetic.Rd | 3 clock-0.7.0/clock/man/year-month-weekday-arithmetic.Rd | 3 clock-0.7.0/clock/man/year-quarter-day-arithmetic.Rd | 3 clock-0.7.0/clock/man/year-week-day-arithmetic.Rd |only clock-0.7.0/clock/man/year-week-day-boundary.Rd |only clock-0.7.0/clock/man/year-week-day-count-between.Rd |only clock-0.7.0/clock/man/year-week-day-getters.Rd |only clock-0.7.0/clock/man/year-week-day-group.Rd |only clock-0.7.0/clock/man/year-week-day-narrow.Rd |only clock-0.7.0/clock/man/year-week-day-setters.Rd |only clock-0.7.0/clock/man/year-week-day-widen.Rd |only clock-0.7.0/clock/man/year_day.Rd | 3 clock-0.7.0/clock/man/year_month_day.Rd | 3 clock-0.7.0/clock/man/year_month_weekday.Rd | 3 clock-0.7.0/clock/man/year_quarter_day.Rd | 3 clock-0.7.0/clock/man/year_week_day.Rd |only clock-0.7.0/clock/man/zoned-zone.Rd | 18 clock-0.7.0/clock/man/zoned_time_info.Rd |only clock-0.7.0/clock/src/calendar.h | 135 - clock-0.7.0/clock/src/clock.h | 1 clock-0.7.0/clock/src/cpp11.cpp | 614 ++-- clock-0.7.0/clock/src/doubles.h |only clock-0.7.0/clock/src/duration.cpp | 1189 +++------ clock-0.7.0/clock/src/duration.h | 639 +--- clock-0.7.0/clock/src/enums.cpp | 22 clock-0.7.0/clock/src/enums.h | 6 clock-0.7.0/clock/src/fill.h |only clock-0.7.0/clock/src/format.cpp | 81 clock-0.7.0/clock/src/get.h | 52 clock-0.7.0/clock/src/gregorian-year-day.cpp | 500 --- clock-0.7.0/clock/src/gregorian-year-day.h | 106 clock-0.7.0/clock/src/gregorian-year-month-day.cpp | 578 ---- clock-0.7.0/clock/src/gregorian-year-month-day.h | 128 clock-0.7.0/clock/src/gregorian-year-month-weekday.cpp | 600 ---- clock-0.7.0/clock/src/gregorian-year-month-weekday.h | 132 - clock-0.7.0/clock/src/integers.h | 74 clock-0.7.0/clock/src/iso-year-week-day.cpp | 571 ---- clock-0.7.0/clock/src/iso-year-week-day.h | 125 clock-0.7.0/clock/src/limits.cpp |only clock-0.7.0/clock/src/naive-time.cpp | 28 clock-0.7.0/clock/src/quarterly-shim.h |only clock-0.7.0/clock/src/quarterly-year-quarter-day.cpp | 1031 +------- clock-0.7.0/clock/src/quarterly-year-quarter-day.h | 673 ++--- clock-0.7.0/clock/src/quarterly.h | 11 clock-0.7.0/clock/src/rcrd.cpp | 8 clock-0.7.0/clock/src/resolve.h | 4 clock-0.7.0/clock/src/sys-time.cpp | 29 clock-0.7.0/clock/src/time-point.cpp | 24 clock-0.7.0/clock/src/utils.cpp | 22 clock-0.7.0/clock/src/utils.h | 1 clock-0.7.0/clock/src/week-shim.h |only clock-0.7.0/clock/src/week-year-week-day.cpp |only clock-0.7.0/clock/src/week-year-week-day.h |only clock-0.7.0/clock/src/week.h |only clock-0.7.0/clock/src/weekday.cpp | 22 clock-0.7.0/clock/src/zoned-time.cpp | 135 - clock-0.7.0/clock/tests/testthat/_snaps/arithmetic.md |only clock-0.7.0/clock/tests/testthat/_snaps/calendar.md | 297 ++ clock-0.7.0/clock/tests/testthat/_snaps/clock-deprecated.md |only clock-0.7.0/clock/tests/testthat/_snaps/clock-labels.md | 72 clock-0.7.0/clock/tests/testthat/_snaps/clock-locale.md | 12 clock-0.7.0/clock/tests/testthat/_snaps/date.md | 276 +- clock-0.7.0/clock/tests/testthat/_snaps/duration.md | 494 +++ clock-0.7.0/clock/tests/testthat/_snaps/getters.md |only clock-0.7.0/clock/tests/testthat/_snaps/gregorian-year-day.md | 474 +++ clock-0.7.0/clock/tests/testthat/_snaps/gregorian-year-month-day.md | 599 ++++ clock-0.7.0/clock/tests/testthat/_snaps/gregorian-year-month-weekday.md | 577 ++++ clock-0.7.0/clock/tests/testthat/_snaps/invalid.md | 6 clock-0.7.0/clock/tests/testthat/_snaps/iso-year-week-day.md | 501 +++ clock-0.7.0/clock/tests/testthat/_snaps/naive-time.md | 202 + clock-0.7.0/clock/tests/testthat/_snaps/posixt.md | 530 +++- clock-0.7.0/clock/tests/testthat/_snaps/quarterly-year-quarter-day.md | 516 +++- clock-0.7.0/clock/tests/testthat/_snaps/sys-time.md | 42 clock-0.7.0/clock/tests/testthat/_snaps/time-point.md | 240 + clock-0.7.0/clock/tests/testthat/_snaps/utils.md | 6 clock-0.7.0/clock/tests/testthat/_snaps/week-year-week-day.md |only clock-0.7.0/clock/tests/testthat/_snaps/weekday.md | 116 clock-0.7.0/clock/tests/testthat/_snaps/zoned-time.md | 178 + clock-0.7.0/clock/tests/testthat/helper-os.R |only clock-0.7.0/clock/tests/testthat/test-arithmetic.R |only clock-0.7.0/clock/tests/testthat/test-calendar.R | 138 - clock-0.7.0/clock/tests/testthat/test-clock-deprecated.R |only clock-0.7.0/clock/tests/testthat/test-clock-labels.R | 24 clock-0.7.0/clock/tests/testthat/test-clock-locale.R | 4 clock-0.7.0/clock/tests/testthat/test-date.R | 188 + clock-0.7.0/clock/tests/testthat/test-duration.R | 280 +- clock-0.7.0/clock/tests/testthat/test-getters.R |only clock-0.7.0/clock/tests/testthat/test-gregorian-year-day.R | 394 ++- clock-0.7.0/clock/tests/testthat/test-gregorian-year-month-day.R | 481 +++ clock-0.7.0/clock/tests/testthat/test-gregorian-year-month-weekday.R | 469 +++ clock-0.7.0/clock/tests/testthat/test-invalid.R | 2 clock-0.7.0/clock/tests/testthat/test-iso-year-week-day.R | 428 +++ clock-0.7.0/clock/tests/testthat/test-naive-time.R | 75 clock-0.7.0/clock/tests/testthat/test-posixt.R | 520 +++- clock-0.7.0/clock/tests/testthat/test-quarterly-year-quarter-day.R | 471 +++ clock-0.7.0/clock/tests/testthat/test-sys-time.R | 21 clock-0.7.0/clock/tests/testthat/test-time-point.R | 216 + clock-0.7.0/clock/tests/testthat/test-utils.R | 2 clock-0.7.0/clock/tests/testthat/test-week-year-week-day.R |only clock-0.7.0/clock/tests/testthat/test-weekday.R | 38 clock-0.7.0/clock/tests/testthat/test-zoned-time.R | 138 - clock-0.7.0/clock/vignettes/faq.Rmd | 171 + clock-0.7.0/clock/vignettes/recipes.Rmd | 66 205 files changed, 16414 insertions(+), 9577 deletions(-)
Title: Estimating Regional Trends of a Prevalence from a DHS and
Similar Surveys
Description: Spatial estimation of a prevalence surface
or a relative risks surface, using data from a Demographic and Health
Survey (DHS) or an analog survey, see Larmarange et al. (2011)
<doi:10.4000/cybergeo.24606>.
Author: Joseph Larmarange [aut, cre]
Maintainer: Joseph Larmarange <joseph.larmarange@ird.fr>
Diff between prevR versions 4.0.1 dated 2022-11-21 and 5.0.0 dated 2023-05-15
prevR-4.0.1/prevR/R/NA.outside.SpatialPolygons.prevR.r |only prevR-4.0.1/prevR/R/as.SpatialGrid.prevR.r |only prevR-4.0.1/prevR/R/point.in.SpatialPolygons.prevR.r |only prevR-4.0.1/prevR/R/setClass.prevR.r |only prevR-4.0.1/prevR/inst/po |only prevR-4.0.1/prevR/man/NA.outside.SpatialPolygons.Rd |only prevR-4.0.1/prevR/man/as.SpatialGrid.Rd |only prevR-4.0.1/prevR/man/point.in.SpatialPolygons.Rd |only prevR-4.0.1/prevR/po |only prevR-5.0.0/prevR/DESCRIPTION | 25 prevR-5.0.0/prevR/MD5 | 137 +-- prevR-5.0.0/prevR/NAMESPACE | 37 prevR-5.0.0/prevR/NEWS.md | 13 prevR-5.0.0/prevR/R/0_setClass_prevR.r |only prevR-5.0.0/prevR/R/Noptim.r | 51 - prevR-5.0.0/prevR/R/as.data.frame.prevR.r | 114 +- prevR-5.0.0/prevR/R/as.prevR.r | 314 +++---- prevR-5.0.0/prevR/R/changeproj.prevR.r | 135 +-- prevR-5.0.0/prevR/R/colors.prevR.r | 336 ++++--- prevR-5.0.0/prevR/R/create.boundary.prevR.r | 144 +-- prevR-5.0.0/prevR/R/direct.label_prevR.r | 34 prevR-5.0.0/prevR/R/export.prevR.r | 267 ++---- prevR-5.0.0/prevR/R/import.dhs.prevR.r | 748 ++++++++++++----- prevR-5.0.0/prevR/R/init.exp.model.variogram.r | 48 - prevR-5.0.0/prevR/R/is.prevR.r | 115 +- prevR-5.0.0/prevR/R/isInputOk.prevR.r | 64 - prevR-5.0.0/prevR/R/kde.prevR.r | 542 ++++++------ prevR-5.0.0/prevR/R/krige.prevR.r | 721 +++++++++------- prevR-5.0.0/prevR/R/make.grid.prevR.r |only prevR-5.0.0/prevR/R/onAttach.r | 23 prevR-5.0.0/prevR/R/plot.prevR.r | 178 ++-- prevR-5.0.0/prevR/R/prevR-package.r | 291 +++--- prevR-5.0.0/prevR/R/print.prevR.r | 23 prevR-5.0.0/prevR/R/quick.prevR.r | 167 ++- prevR-5.0.0/prevR/R/rings.prevR.r | 330 +++---- prevR-5.0.0/prevR/R/show.prevR.r | 178 ++-- prevR-5.0.0/prevR/R/st_filter_prevR.r |only prevR-5.0.0/prevR/R/summary.prevR.r | 91 +- prevR-5.0.0/prevR/R/theme_prevR.r | 43 prevR-5.0.0/prevR/R/update_prevR.R |only prevR-5.0.0/prevR/R/xyz2dataframe.prevR.r | 73 - prevR-5.0.0/prevR/build/vignette.rds |binary prevR-5.0.0/prevR/data/TMWorldBorders.rda |binary prevR-5.0.0/prevR/data/fdhs.rda |binary prevR-5.0.0/prevR/demo/prevR.r | 69 + prevR-5.0.0/prevR/inst/CITATION | 12 prevR-5.0.0/prevR/inst/WORDLIST |only prevR-5.0.0/prevR/inst/doc/intro_prevR.R | 70 + prevR-5.0.0/prevR/inst/doc/intro_prevR.Rmd | 72 + prevR-5.0.0/prevR/inst/doc/intro_prevR.html | 147 +-- prevR-5.0.0/prevR/man/Noptim.Rd | 8 prevR-5.0.0/prevR/man/TMWorldBorders.Rd | 18 prevR-5.0.0/prevR/man/as.data.frame.prevR.Rd | 34 prevR-5.0.0/prevR/man/as.prevR.Rd | 47 - prevR-5.0.0/prevR/man/changeproj-prevR-method.Rd | 24 prevR-5.0.0/prevR/man/create.boundary.Rd | 32 prevR-5.0.0/prevR/man/direct.label_prevR.Rd | 6 prevR-5.0.0/prevR/man/export-prevR-method.Rd | 84 + prevR-5.0.0/prevR/man/fdhs.Rd | 18 prevR-5.0.0/prevR/man/import.dhs.Rd | 16 prevR-5.0.0/prevR/man/is.prevR.Rd | 23 prevR-5.0.0/prevR/man/kde-prevR-method.Rd | 118 +- prevR-5.0.0/prevR/man/krige-ANY-prevR-method.Rd | 104 +- prevR-5.0.0/prevR/man/make.grid.prevR.Rd |only prevR-5.0.0/prevR/man/plot-prevR-missing-method.Rd | 27 prevR-5.0.0/prevR/man/prevR-class.Rd | 94 +- prevR-5.0.0/prevR/man/prevR-package.Rd | 161 +-- prevR-5.0.0/prevR/man/prevR.colors.Rd | 51 - prevR-5.0.0/prevR/man/print-prevR-method.Rd | 4 prevR-5.0.0/prevR/man/quick.prevR.Rd | 5 prevR-5.0.0/prevR/man/rings-prevR-method.Rd | 86 + prevR-5.0.0/prevR/man/show-prevR-method.Rd | 6 prevR-5.0.0/prevR/man/st_filter_prevR.Rd |only prevR-5.0.0/prevR/man/summary-prevR-method.Rd | 6 prevR-5.0.0/prevR/man/update_prevR.Rd |only prevR-5.0.0/prevR/man/xyz2dataframe.Rd | 24 prevR-5.0.0/prevR/tests |only prevR-5.0.0/prevR/vignettes/intro_prevR.Rmd | 72 + 78 files changed, 3795 insertions(+), 2885 deletions(-)
Title: Comprehensive and Easy to Use Quality Control of GWAS Results
Description: When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.
Author: Alireza Ani [aut, cre],
Peter J. van der Most [aut],
Ahmad Vaez [aut],
Ilja M. Nolte [aut]
Maintainer: Alireza Ani <a.ani@umcg.nl>
Diff between GWASinspector versions 1.6.1 dated 2023-01-09 and 1.6.4 dated 2023-05-15
GWASinspector-1.6.1/GWASinspector/man/compare.GWASs.Rd |only GWASinspector-1.6.1/GWASinspector/man/demo.inspector.Rd |only GWASinspector-1.6.1/GWASinspector/man/get.config.Rd |only GWASinspector-1.6.1/GWASinspector/man/get.headerTranslation.Rd |only GWASinspector-1.6.1/GWASinspector/man/manhattan.plot.Rd |only GWASinspector-1.6.1/GWASinspector/man/result.inspector.Rd |only GWASinspector-1.6.1/GWASinspector/man/run.inspector.Rd |only GWASinspector-1.6.1/GWASinspector/man/setup.inspector.Rd |only GWASinspector-1.6.1/GWASinspector/man/system.check.Rd |only GWASinspector-1.6.4/GWASinspector/ChangeLog | 13 GWASinspector-1.6.4/GWASinspector/DESCRIPTION | 20 - GWASinspector-1.6.4/GWASinspector/MD5 | 140 +++++----- GWASinspector-1.6.4/GWASinspector/NAMESPACE | 18 - GWASinspector-1.6.4/GWASinspector/NEWS | 5 GWASinspector-1.6.4/GWASinspector/R/GWASinspector.R | 26 - GWASinspector-1.6.4/GWASinspector/R/QQPlotFunction.R | 20 - GWASinspector-1.6.4/GWASinspector/R/Study.R | 2 GWASinspector-1.6.4/GWASinspector/R/aaa.R | 2 GWASinspector-1.6.4/GWASinspector/R/alleleMatch.R | 32 +- GWASinspector-1.6.4/GWASinspector/R/altReferenceRelatedFucntions.R | 18 - GWASinspector-1.6.4/GWASinspector/R/betaReferenceRelatedFunctions.R | 12 GWASinspector-1.6.4/GWASinspector/R/calculationFunctions.R | 10 GWASinspector-1.6.4/GWASinspector/R/checkConfigFile.R | 62 ++-- GWASinspector-1.6.4/GWASinspector/R/class_definition.R | 4 GWASinspector-1.6.4/GWASinspector/R/compare_GWASs.R | 70 ++--- GWASinspector-1.6.4/GWASinspector/R/demoConfig.R | 4 GWASinspector-1.6.4/GWASinspector/R/demo_inspector.R | 20 - GWASinspector-1.6.4/GWASinspector/R/drawPlots.R | 32 +- GWASinspector-1.6.4/GWASinspector/R/effect_size_ref_make.R | 6 GWASinspector-1.6.4/GWASinspector/R/effectsizePlotFunction.R | 4 GWASinspector-1.6.4/GWASinspector/R/excelReportFunctions.R | 26 - GWASinspector-1.6.4/GWASinspector/R/fileFunctions.R | 38 +- GWASinspector-1.6.4/GWASinspector/R/getConfig.R | 2 GWASinspector-1.6.4/GWASinspector/R/getHeaderTranslation.R | 2 GWASinspector-1.6.4/GWASinspector/R/headerRelatedFunctions.R | 40 +- GWASinspector-1.6.4/GWASinspector/R/histPlotFunction.R | 4 GWASinspector-1.6.4/GWASinspector/R/loggerFunctions.R | 2 GWASinspector-1.6.4/GWASinspector/R/mafPlotFunction.R | 16 - GWASinspector-1.6.4/GWASinspector/R/manh_plot.R | 38 +- GWASinspector-1.6.4/GWASinspector/R/manhattanPlotFunction.R | 32 +- GWASinspector-1.6.4/GWASinspector/R/multiStudyFunctions.R | 26 - GWASinspector-1.6.4/GWASinspector/R/multiStudyPlots.R | 42 +-- GWASinspector-1.6.4/GWASinspector/R/pValueCorPlot.R | 26 - GWASinspector-1.6.4/GWASinspector/R/pValueFunctions.R | 14 - GWASinspector-1.6.4/GWASinspector/R/processColumns.R | 54 +-- GWASinspector-1.6.4/GWASinspector/R/processInputFile.R | 86 +++--- GWASinspector-1.6.4/GWASinspector/R/rSQLiteFunctions.R | 54 +-- GWASinspector-1.6.4/GWASinspector/R/referenceRelatedFunctions.R | 16 - GWASinspector-1.6.4/GWASinspector/R/reportRelatedFunctions.R | 62 ++-- GWASinspector-1.6.4/GWASinspector/R/result_inspector.R | 4 GWASinspector-1.6.4/GWASinspector/R/run_inspector.R | 56 ++-- GWASinspector-1.6.4/GWASinspector/R/saveFilesFunctions.R | 40 +- GWASinspector-1.6.4/GWASinspector/R/setGraphicDevice.R | 20 - GWASinspector-1.6.4/GWASinspector/R/setup_inspector.R | 12 GWASinspector-1.6.4/GWASinspector/R/studyFunctions.R | 140 +++++----- GWASinspector-1.6.4/GWASinspector/R/suppFunctions.R | 64 ++-- GWASinspector-1.6.4/GWASinspector/R/system_check.R | 4 GWASinspector-1.6.4/GWASinspector/R/terminationFunctions.R | 4 GWASinspector-1.6.4/GWASinspector/R/uploadInputFile.R | 34 +- GWASinspector-1.6.4/GWASinspector/R/validate.R | 2 GWASinspector-1.6.4/GWASinspector/R/variantMatching.R | 6 GWASinspector-1.6.4/GWASinspector/R/variantMatchingFunctions.R | 8 GWASinspector-1.6.4/GWASinspector/R/variantModifierFunctions.R | 44 +-- GWASinspector-1.6.4/GWASinspector/build/vignette.rds |binary GWASinspector-1.6.4/GWASinspector/inst/CITATION | 15 - GWASinspector-1.6.4/GWASinspector/inst/doc/GWASinspector.html | 4 GWASinspector-1.6.4/GWASinspector/inst/rmd/multiFileReport.rmd | 4 GWASinspector-1.6.4/GWASinspector/inst/rmd/multiFileReport_alone_extra.rmd | 4 GWASinspector-1.6.4/GWASinspector/inst/rmd/multiFileReport_extra.rmd | 4 GWASinspector-1.6.4/GWASinspector/man/GWASinspector.Rd | 26 - GWASinspector-1.6.4/GWASinspector/man/Inspector-class.Rd | 2 GWASinspector-1.6.4/GWASinspector/man/compare_GWASs.Rd |only GWASinspector-1.6.4/GWASinspector/man/demo_inspector.Rd |only GWASinspector-1.6.4/GWASinspector/man/get_config.Rd |only GWASinspector-1.6.4/GWASinspector/man/get_headerTranslation.Rd |only GWASinspector-1.6.4/GWASinspector/man/manhattan_plot.Rd |only GWASinspector-1.6.4/GWASinspector/man/result_inspector.Rd |only GWASinspector-1.6.4/GWASinspector/man/run_inspector.Rd |only GWASinspector-1.6.4/GWASinspector/man/setup_inspector.Rd |only GWASinspector-1.6.4/GWASinspector/man/system_check.Rd |only 80 files changed, 805 insertions(+), 792 deletions(-)
Title: Get Data for Brazilian Bonds (Tesouro Direto)
Description: Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <https://www.tesourodireto.com.br/>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetTDData versions 1.5.2 dated 2023-01-06 and 1.5.4 dated 2023-05-15
GetTDData-1.5.2/GetTDData/R/gtdd_utils.R |only GetTDData-1.5.2/GetTDData/build |only GetTDData-1.5.2/GetTDData/inst/doc |only GetTDData-1.5.2/GetTDData/vignettes |only GetTDData-1.5.4/GetTDData/DESCRIPTION | 13 GetTDData-1.5.4/GetTDData/MD5 | 34 +- GetTDData-1.5.4/GetTDData/NAMESPACE | 3 GetTDData-1.5.4/GetTDData/NEWS.md | 7 GetTDData-1.5.4/GetTDData/R/download_td_file.R |only GetTDData-1.5.4/GetTDData/R/gtdd_download_TD_data.R | 12 GetTDData-1.5.4/GetTDData/R/gtdd_read_TD_files.R | 10 GetTDData-1.5.4/GetTDData/R/read_td_file.R |only GetTDData-1.5.4/GetTDData/R/td_get.R |only GetTDData-1.5.4/GetTDData/R/utils.R |only GetTDData-1.5.4/GetTDData/README.md | 154 +++++++++- GetTDData-1.5.4/GetTDData/man/figures |only GetTDData-1.5.4/GetTDData/man/get_cache_folder.Rd |only GetTDData-1.5.4/GetTDData/man/get_td_names.Rd |only GetTDData-1.5.4/GetTDData/man/td_get.Rd |only GetTDData-1.5.4/GetTDData/tests/testthat/test-importing-data.R | 72 +--- GetTDData-1.5.4/GetTDData/tests/testthat/test-utils.R | 10 21 files changed, 226 insertions(+), 89 deletions(-)
Title: Build 'Docker Images' in 'Amazon SageMaker Studio' using 'Amazon
Web Service CodeBuild'
Description: Allows users to easily build custom 'docker images' <https://docs.docker.com/> from
'Amazon Web Service Sagemaker' <https://aws.amazon.com/sagemaker/> using
'Amazon Web Service CodeBuild' <https://aws.amazon.com/codebuild/>.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between smdocker versions 0.1.2 dated 2023-03-10 and 0.1.3 dated 2023-05-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/code_build.R | 13 ++----------- tests/testthat/test-code-build.R | 15 ++++++++------- 5 files changed, 22 insertions(+), 26 deletions(-)
Title: Fundamentos De Estadistica Descriptiva e Inferencial
Description: Este paquete pretende apoyar el proceso enseñanza-aprendizaje de estadística descriptiva e inferencial. Las funciones contenidas en el paquete 'estadistica' cubren los conceptos básicos estudiados en un curso introductorio. Muchos conceptos son ilustrados con gráficos dinámicos o web apps para facilitar su comprensión. This package aims to help the teaching-learning process of descriptive and inferential statistics. The functions contained in the package 'estadistica' cover the basic concepts studied in a statistics introductory course. Many concepts are illustrated with dynamic graphs or web apps to make the understanding easier. See: Esteban et al. (2005, ISBN: 9788497323741), Newbold et al.(2019, ISBN:9781292315034 ), Murgui et al. (2002, ISBN:9788484424673) .
Author: Vicente Coll-Serrano [aut, cre],
Rosario Martinez Verdú [aut],
Cristina Pardo Garcia [ctb]
Maintainer: Vicente Coll-Serrano <estadistic@uv.es>
Diff between estadistica versions 0.2.2 dated 2022-09-05 and 0.2.3 dated 2023-05-15
DESCRIPTION | 10 +++---- MD5 | 25 +++++++++--------- NAMESPACE | 1 R/cuantiles.int.R | 6 ++++ R/data.sets.R | 2 - R/funcion_agrupar.R |only R/globals.R | 2 - R/ic.diferencia.medias.R | 65 ++++++++++++++++++++++++++++++++++++----------- R/mediana.int.R | 6 ++++ R/momento.central.R | 14 +++++----- R/regresion.simple.R | 54 +++++++++++++++++++++------------------ R/tabla.bidimensional.R | 2 - data/turistas.rdata |binary man/turistas.Rd | 2 - 14 files changed, 122 insertions(+), 67 deletions(-)
Title: Time Series and Econometric Modeling
Description: Time series analysis, (dis)aggregation and manipulation, e.g. time series extension, merge, projection, lag, lead, delta, moving and cumulative average and product, selection by index, date and year-period, conversion to daily, monthly, quarterly, (semi)annually. Simultaneous equation models definition, estimation, simulation and forecasting with coefficient restrictions, error autocorrelation, exogenization, add-factors, impact and interim multipliers analysis, conditional equation evaluation, endogenous targeting and model renormalization, structural stability, stochastic simulation and forecast, optimal control.
Author: Andrea Luciani [aut, cre] ,
Roberto Stok [aut],
Bank of Italy [cph]
Maintainer: Andrea Luciani <andrea.luciani@bancaditalia.it>
Diff between bimets versions 2.3.0 dated 2023-02-09 and 3.0.1 dated 2023-05-15
DESCRIPTION | 10 MD5 | 32 NEWS.md | 45 R/bimets_model_functions.R | 6941 ++++++++++++++--------------- R/bimets_ts_functions.R |10530 ++++++++++++++++++++------------------------- README.md | 2 inst/doc/bimets.R | 82 inst/doc/bimets.Rnw | 69 inst/doc/bimets.pdf |binary man/LOAD_MODEL.Rd | 631 +- man/MULTMATRIX.Rd | 500 +- man/OPTIMIZE.Rd | 1036 ++-- man/RENORM.Rd | 634 +- man/SIMULATE.Rd | 1209 ++--- man/STOCHSIMULATE.Rd | 136 man/bimets-package.Rd | 2582 +++++------ vignettes/bimets.Rnw | 69 17 files changed, 11772 insertions(+), 12736 deletions(-)
Title: Power Analyses for SEM
Description: Provides a-priori, post-hoc, and compromise power-analyses
for structural equation models (SEM).
Author: Morten Moshagen [aut, cre] ,
Martina Bader [aut]
Maintainer: Morten Moshagen <morten.moshagen@uni-ulm.de>
Diff between semPower versions 1.2.0 dated 2021-11-01 and 2.0.0 dated 2023-05-15
semPower-1.2.0/semPower/inst/doc/semPower.R |only semPower-1.2.0/semPower/inst/doc/semPower.pdf |only semPower-1.2.0/semPower/vignettes/figures |only semPower-1.2.0/semPower/vignettes/semPower.html |only semPower-2.0.0/semPower/DESCRIPTION | 25 semPower-2.0.0/semPower/MD5 | 150 semPower-2.0.0/semPower/NAMESPACE | 25 semPower-2.0.0/semPower/R/aPriori.R | 406 semPower-2.0.0/semPower/R/compromise.R | 128 semPower-2.0.0/semPower/R/convenienceFunctions.R | 7334 ++++++++++- semPower-2.0.0/semPower/R/effectSizes.R |only semPower-2.0.0/semPower/R/helperFunctions.R | 1323 + semPower-2.0.0/semPower/R/onAttach.R | 5 semPower-2.0.0/semPower/R/output.R |only semPower-2.0.0/semPower/R/plots.R | 83 semPower-2.0.0/semPower/R/postHoc.R | 250 semPower-2.0.0/semPower/R/semPower.R | 7 semPower-2.0.0/semPower/R/simulate.R |only semPower-2.0.0/semPower/R/validator.R | 514 semPower-2.0.0/semPower/R/zUnitTests.R |only semPower-2.0.0/semPower/README.md | 770 + semPower-2.0.0/semPower/build/vignette.rds |binary semPower-2.0.0/semPower/inst/doc/semPower.Rmd | 821 - semPower-2.0.0/semPower/inst/doc/semPower.html |only semPower-2.0.0/semPower/man/checkBounded.Rd | 2 semPower-2.0.0/semPower/man/checkComparisonModel.Rd |only semPower-2.0.0/semPower/man/checkDataGenerationTypes.Rd |only semPower-2.0.0/semPower/man/checkEllipsis.Rd |only semPower-2.0.0/semPower/man/checkMissingTypes.Rd |only semPower-2.0.0/semPower/man/checkNullEffect.Rd |only semPower-2.0.0/semPower/man/checkPositive.Rd | 4 semPower-2.0.0/semPower/man/checkPositiveDefinite.Rd | 8 semPower-2.0.0/semPower/man/checkPowerTypes.Rd | 34 semPower-2.0.0/semPower/man/checkSquare.Rd |only semPower-2.0.0/semPower/man/checkSymmetricSquare.Rd |only semPower-2.0.0/semPower/man/doSim.Rd |only semPower-2.0.0/semPower/man/genData.IG.Rd |only semPower-2.0.0/semPower/man/genData.RK.Rd |only semPower-2.0.0/semPower/man/genData.Rd |only semPower-2.0.0/semPower/man/genData.VM.Rd |only semPower-2.0.0/semPower/man/genData.mnonr.Rd |only semPower-2.0.0/semPower/man/genData.normal.Rd |only semPower-2.0.0/semPower/man/genLambda.Rd |only semPower-2.0.0/semPower/man/genModelString.Rd |only semPower-2.0.0/semPower/man/getAGFI.F.Rd | 6 semPower-2.0.0/semPower/man/getBetadiff.Rd | 18 semPower-2.0.0/semPower/man/getCFI.Sigma.Rd | 16 semPower-2.0.0/semPower/man/getCFI.Sigma.mgroups.Rd | 50 semPower-2.0.0/semPower/man/getChiSquare.F.Rd | 17 semPower-2.0.0/semPower/man/getChiSquare.NCP.Rd | 9 semPower-2.0.0/semPower/man/getErrorDiff.Rd | 2 semPower-2.0.0/semPower/man/getF.AGFI.Rd | 9 semPower-2.0.0/semPower/man/getF.GFI.Rd | 6 semPower-2.0.0/semPower/man/getF.Mc.Rd | 6 semPower-2.0.0/semPower/man/getF.RMSEA.Rd | 10 semPower-2.0.0/semPower/man/getF.Rd | 24 semPower-2.0.0/semPower/man/getF.Sigma.Rd | 17 semPower-2.0.0/semPower/man/getFormattedResults.Rd | 4 semPower-2.0.0/semPower/man/getFormattedSimulationResults.Rd |only semPower-2.0.0/semPower/man/getGFI.F.Rd | 6 semPower-2.0.0/semPower/man/getIndices.F.Rd | 19 semPower-2.0.0/semPower/man/getKSdistance.Rd |only semPower-2.0.0/semPower/man/getLavOptions.Rd |only semPower-2.0.0/semPower/man/getMc.F.Rd | 6 semPower-2.0.0/semPower/man/getNCP.Rd | 14 semPower-2.0.0/semPower/man/getPhi.B.Rd |only semPower-2.0.0/semPower/man/getPsi.B.Rd |only semPower-2.0.0/semPower/man/getRMSEA.F.Rd | 10 semPower-2.0.0/semPower/man/getSRMR.Sigma.Rd | 13 semPower-2.0.0/semPower/man/getSRMR.Sigma.mgroups.Rd | 48 semPower-2.0.0/semPower/man/makeRestrictionsLavFriendly.Rd |only semPower-2.0.0/semPower/man/orderLavCov.Rd |only semPower-2.0.0/semPower/man/orderLavMu.Rd |only semPower-2.0.0/semPower/man/orderLavResults.Rd |only semPower-2.0.0/semPower/man/powerPrepare.Rd |only semPower-2.0.0/semPower/man/semPower.Rd | 6 semPower-2.0.0/semPower/man/semPower.aPriori.Rd | 101 semPower-2.0.0/semPower/man/semPower.compromise.Rd | 43 semPower-2.0.0/semPower/man/semPower.genSigma.Rd |only semPower-2.0.0/semPower/man/semPower.getDf.Rd | 67 semPower-2.0.0/semPower/man/semPower.postHoc.Rd | 88 semPower-2.0.0/semPower/man/semPower.powerARMA.Rd |only semPower-2.0.0/semPower/man/semPower.powerAutoreg.Rd |only semPower-2.0.0/semPower/man/semPower.powerBifactor.Rd |only semPower-2.0.0/semPower/man/semPower.powerCFA.Rd | 385 semPower-2.0.0/semPower/man/semPower.powerCLPM.Rd |only semPower-2.0.0/semPower/man/semPower.powerLGCM.Rd |only semPower-2.0.0/semPower/man/semPower.powerLI.Rd |only semPower-2.0.0/semPower/man/semPower.powerLav.Rd |only semPower-2.0.0/semPower/man/semPower.powerMI.Rd |only semPower-2.0.0/semPower/man/semPower.powerMediation.Rd |only semPower-2.0.0/semPower/man/semPower.powerPath.Rd |only semPower-2.0.0/semPower/man/semPower.powerPlot.Rd |only semPower-2.0.0/semPower/man/semPower.powerPlot.byEffect.Rd | 8 semPower-2.0.0/semPower/man/semPower.powerPlot.byN.Rd | 18 semPower-2.0.0/semPower/man/semPower.powerRICLPM.Rd |only semPower-2.0.0/semPower/man/semPower.powerRegression.Rd |only semPower-2.0.0/semPower/man/semPower.showPlot.Rd | 42 semPower-2.0.0/semPower/man/simulate.Rd |only semPower-2.0.0/semPower/man/validateInput.Rd | 24 semPower-2.0.0/semPower/vignettes/semPower.Rmd | 821 - 101 files changed, 10543 insertions(+), 3259 deletions(-)
Title: The Online Principal Component Estimation Method
Description: The online principal component method can process the online data set. The philosophy of the package is described in Guo G. (2018) <doi:10.1080/10485252.2018.1531130>.
Author: Chunjie Wei [aut, cre],
Guangbao Guo [aut]
Maintainer: Chunjie Wei <wcj1236@163.com>
Diff between OPC versions 0.0.1 dated 2022-03-30 and 0.0.2 dated 2023-05-15
DESCRIPTION | 10 +++++----- LICENSE | 4 ++-- MD5 | 6 +++--- NAMESPACE | 2 +- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Date and Time Functions for Public Health Purposes
Description: Provides easy and consistent time conversion for public health purposes. The time conversion functions provided here are between date, ISO week, ISO yearweek, ISO year, calendar month/year, season, season week.
Author: Chi Zhang [aut, cre] ,
Richard Aubrey White [aut]
Maintainer: Chi Zhang <andreachizhang@yahoo.com>
Diff between cstime versions 2022.11.22 dated 2022-12-05 and 2023.5.3 dated 2023-05-15
DESCRIPTION | 10 - MD5 | 70 +++---- NAMESPACE | 59 ++++++ NEWS.md |only R/conversion_date_calmonth_calyear.R | 118 ++++++++++-- R/conversion_date_isoweek_isoyear.R | 327 ++++++++++++++++++++++++++--------- R/conversion_season.R | 113 ++++++------ R/now_c.R |only R/sysdata.rda |only README.md | 2 build/vignette.rds |binary inst/doc/cstime.html | 115 ++++++------ inst/doc/date_conversion.html | 119 ++++++------ inst/doc/season.html | 121 ++++++------ man/date_to_calmonth_c.Rd | 9 man/date_to_calmonth_n.Rd | 9 man/date_to_calyear_c.Rd | 9 man/date_to_calyear_n.Rd | 9 man/date_to_calyearmonth_c.Rd | 9 man/date_to_isoweek_c.Rd | 13 + man/date_to_isoweek_n.Rd | 9 man/date_to_isoyear_c.Rd | 9 man/date_to_isoyear_n.Rd | 9 man/date_to_isoyearweek_c.Rd | 9 man/figures/logo.png |binary man/isoweek_to_seasonweek_n.Rd | 13 + man/isoyear_to_last_date.Rd | 9 man/isoyear_to_last_isoweek_n.Rd | 9 man/isoyear_to_last_isoyearweek_c.Rd | 9 man/isoyearweek_to_isoweek_c.Rd | 10 - man/isoyearweek_to_isoweek_n.Rd | 10 - man/isoyearweek_to_isoyear_c.Rd | 10 - man/isoyearweek_to_isoyear_n.Rd | 10 - man/isoyearweek_to_last_date.Rd | 6 man/isoyearweek_to_season_c.Rd | 6 man/now_c.Rd |only man/seasonweek_to_isoweek_c.Rd | 10 - man/seasonweek_to_isoweek_n.Rd | 10 - 38 files changed, 884 insertions(+), 376 deletions(-)
Title: Produces 'bubbleHeatmap' Plots for Visualising Metabolomics Data
Description: Plotting package based on the grid system, combining elements of
a bubble plot and heatmap to conveniently display two numerical variables,
(represented by color and size) grouped by categorical variables on the x
and y axes. This is a useful alternative to a forest plot when the data can
be grouped in two dimensions, such as predictors x outcomes. It has
particular advantages for visualising the metabolic measures produced by
the 'Nightingale Health' metabolomics platform, and templates are included
for automatically generating figures from these datasets.
Author: Ruth Boxall [aut, cre],
Michael Holmes [ctb],
Robin Walters [ctb]
Maintainer: Ruth Boxall <ruth.boxall@ndph.ox.ac.uk>
Diff between bubbleHeatmap versions 0.1.0 dated 2023-02-17 and 0.1.1 dated 2023-05-15
bubbleHeatmap-0.1.0/bubbleHeatmap/R/nightingale.R |only bubbleHeatmap-0.1.0/bubbleHeatmap/man/nightingale.Rd |only bubbleHeatmap-0.1.0/bubbleHeatmap/man/nightingalePlot.Rd |only bubbleHeatmap-0.1.1/bubbleHeatmap/DESCRIPTION | 8 bubbleHeatmap-0.1.1/bubbleHeatmap/MD5 | 26 +- bubbleHeatmap-0.1.1/bubbleHeatmap/NAMESPACE | 4 bubbleHeatmap-0.1.1/bubbleHeatmap/R/buildFunctions.R | 92 +++++++--- bubbleHeatmap-0.1.1/bubbleHeatmap/R/formatData.R | 2 bubbleHeatmap-0.1.1/bubbleHeatmap/R/metabFigure.R |only bubbleHeatmap-0.1.1/bubbleHeatmap/build/vignette.rds |binary bubbleHeatmap-0.1.1/bubbleHeatmap/inst/doc/Using_Bubbleheatmap.R | 9 bubbleHeatmap-0.1.1/bubbleHeatmap/inst/doc/Using_Bubbleheatmap.Rmd | 17 - bubbleHeatmap-0.1.1/bubbleHeatmap/inst/doc/Using_Bubbleheatmap.html | 30 +-- bubbleHeatmap-0.1.1/bubbleHeatmap/man/bubbleHMLegends.Rd | 10 - bubbleHeatmap-0.1.1/bubbleHeatmap/man/metabFigure.Rd |only bubbleHeatmap-0.1.1/bubbleHeatmap/man/metabFigurePlot.Rd |only bubbleHeatmap-0.1.1/bubbleHeatmap/vignettes/Using_Bubbleheatmap.Rmd | 17 - 17 files changed, 134 insertions(+), 81 deletions(-)
Title: Create Interactive Web Exercises in 'R Markdown' (Formerly
'webex')
Description: Functions for easily creating interactive web pages using
'R Markdown' that students can use in self-guided learning.
Author: Dale Barr [aut],
Lisa DeBruine [aut, cre]
Maintainer: Lisa DeBruine <debruine@gmail.com>
Diff between webexercises versions 1.0.0 dated 2021-09-15 and 1.1.0 dated 2023-05-15
DESCRIPTION | 27 - MD5 | 44 +- NAMESPACE | 2 NEWS.md | 9 R/add_to_bookdown.R | 50 +- R/add_to_quarto.R |only R/quarto.R |only R/webexercises_default.R | 31 - R/webexercises_fns.R | 240 ++++++++--- R/zzz.R |only README.md | 73 --- inst/reports/default/index.Rmd | 45 +- inst/reports/default/index.qmd |only inst/reports/default/webex.R | 16 inst/reports/default/webex.css | 92 +++- inst/reports/default/webex.js | 69 ++- inst/reports/default/webexercises.qmd |only inst/rmarkdown/templates/webexercises/skeleton/skeleton.Rmd | 59 +- inst/rmarkdown/templates/webexercises/skeleton/skeleton.html |only man/add_to_quarto.Rd |only man/create_quarto_doc.Rd |only man/mcq.Rd | 4 man/style_widgets.Rd | 30 - man/total_correct.Rd | 6 man/unhide.Rd | 2 tests/testthat/test-add_to_bookdown.R | 68 +-- tests/testthat/test-add_to_quarto.R |only tests/testthat/test-create_quarto_doc.R |only 28 files changed, 516 insertions(+), 351 deletions(-)
Title: Article Formats for R Markdown
Description: A suite of custom R Markdown formats and templates for
authoring journal articles and conference submissions.
Author: JJ Allaire [aut],
Yihui Xie [aut] ,
Christophe Dervieux [aut, cre]
,
Posit Software, PBC [cph, fnd],
R Foundation [aut, cph],
Hadley Wickham [aut],
Journal of Statistical Software [aut, cph],
Ramnath Vaidyanathan [aut, cph],
Association for Computing [...truncated...]
Maintainer: Christophe Dervieux <cderv@posit.co>
Diff between rticles versions 0.24 dated 2022-08-25 and 0.25 dated 2023-05-15
rticles-0.24/rticles/inst/rmarkdown/templates/asa/skeleton/agsm.bst |only rticles-0.24/rticles/inst/rmarkdown/templates/copernicus/resources/README_copernicus_package_6_8.txt |only rticles-0.24/rticles/inst/rmarkdown/templates/mdpi/skeleton/chicago2.bst |only rticles-0.24/rticles/inst/rmarkdown/templates/mdpi/skeleton/journalnames.tex |only rticles-0.24/rticles/inst/rmarkdown/templates/mdpi/skeleton/logo-ccby.pdf |only rticles-0.24/rticles/inst/rmarkdown/templates/mdpi/skeleton/logo-mdpi.pdf |only rticles-0.24/rticles/inst/rmarkdown/templates/mdpi/skeleton/logo-orcid.pdf |only rticles-0.24/rticles/inst/rmarkdown/templates/mdpi/skeleton/logo-updates.pdf |only rticles-0.24/rticles/inst/rmarkdown/templates/mdpi/skeleton/mdpi.bst |only rticles-0.24/rticles/inst/rmarkdown/templates/mdpi/skeleton/mdpi.cls |only rticles-0.24/rticles/inst/rmarkdown/templates/springer/skeleton/spbasic.bst |only rticles-0.24/rticles/inst/rmarkdown/templates/springer/skeleton/spphys.bst |only rticles-0.24/rticles/inst/rmarkdown/templates/springer/skeleton/svglov3.clo |only rticles-0.24/rticles/inst/rmarkdown/templates/springer/skeleton/svjour3.cls |only rticles-0.25/rticles/DESCRIPTION | 26 rticles-0.25/rticles/MD5 | 137 +- rticles-0.25/rticles/NAMESPACE | 1 rticles-0.25/rticles/NEWS.md | 48 rticles-0.25/rticles/R/article.R | 159 ++ rticles-0.25/rticles/R/copernicus_article.R | 5 rticles-0.25/rticles/R/ieee_article.R | 2 rticles-0.25/rticles/R/jss_article.R | 6 rticles-0.25/rticles/R/oup_article.R | 2 rticles-0.25/rticles/R/rjournal_article.R | 12 rticles-0.25/rticles/R/utils.R | 95 + rticles-0.25/rticles/inst/rmarkdown/templates/acm/resources/template.tex | 3 rticles-0.25/rticles/inst/rmarkdown/templates/acs/resources/template.tex | 13 rticles-0.25/rticles/inst/rmarkdown/templates/ajs/skeleton/skeleton.Rmd | 2 rticles-0.25/rticles/inst/rmarkdown/templates/asa/resources/template.tex | 79 + rticles-0.25/rticles/inst/rmarkdown/templates/asa/skeleton/skeleton.Rmd | 74 + rticles-0.25/rticles/inst/rmarkdown/templates/copernicus/resources/README_copernicus_package_7_3.txt |only rticles-0.25/rticles/inst/rmarkdown/templates/copernicus/resources/template.tex | 3 rticles-0.25/rticles/inst/rmarkdown/templates/copernicus/skeleton/copernicus.cfg | 102 + rticles-0.25/rticles/inst/rmarkdown/templates/copernicus/skeleton/copernicus.cls | 242 +++- rticles-0.25/rticles/inst/rmarkdown/templates/elsevier/resources/template.tex | 38 rticles-0.25/rticles/inst/rmarkdown/templates/elsevier/skeleton/skeleton.Rmd | 13 rticles-0.25/rticles/inst/rmarkdown/templates/glossa/resources/template.tex | 6 rticles-0.25/rticles/inst/rmarkdown/templates/ieee/resources/template.tex | 100 - rticles-0.25/rticles/inst/rmarkdown/templates/ieee/skeleton/skeleton.Rmd | 69 - rticles-0.25/rticles/inst/rmarkdown/templates/isba/skeleton/skeleton.Rmd | 2 rticles-0.25/rticles/inst/rmarkdown/templates/jasa/resources/template.tex | 6 rticles-0.25/rticles/inst/rmarkdown/templates/joss/resources/template.tex | 27 rticles-0.25/rticles/inst/rmarkdown/templates/joss/skeleton/skeleton.Rmd | 2 rticles-0.25/rticles/inst/rmarkdown/templates/jss/skeleton/skeleton.Rmd | 2 rticles-0.25/rticles/inst/rmarkdown/templates/mdpi/resources/template.tex | 230 ++-- rticles-0.25/rticles/inst/rmarkdown/templates/mdpi/skeleton/Definitions |only rticles-0.25/rticles/inst/rmarkdown/templates/mdpi/skeleton/skeleton.Rmd | 346 +++++- rticles-0.25/rticles/inst/rmarkdown/templates/oup_v1/resources/template.tex | 18 rticles-0.25/rticles/inst/rmarkdown/templates/peerj/skeleton/wlpeerj.cls | 4 rticles-0.25/rticles/inst/rmarkdown/templates/pihph/resources/template.tex | 6 rticles-0.25/rticles/inst/rmarkdown/templates/rjournal/skeleton/RJournal.sty | 4 rticles-0.25/rticles/inst/rmarkdown/templates/springer/resources/template.tex | 173 +-- rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/bibliography.bib | 42 rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/skeleton.Rmd | 561 +++++++++- rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/skeleton.log |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/skeleton.pdf |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/skeleton.tex |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/skeleton_files |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/sn-apacite.bst |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/sn-aps.bst |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/sn-basic.bst |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/sn-chicago.bst |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/sn-jnl.cls |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/sn-mathphys.bst |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/sn-nature.bst |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/sn-standardnature.bst |only rticles-0.25/rticles/inst/rmarkdown/templates/springer/skeleton/sn-vancouver.bst |only rticles-0.25/rticles/man/article.Rd | 48 rticles-0.25/rticles/man/copernicus_article.Rd | 2 rticles-0.25/rticles/man/figures/lifecycle-archived.svg |only rticles-0.25/rticles/man/figures/lifecycle-defunct.svg |only rticles-0.25/rticles/man/figures/lifecycle-deprecated.svg |only rticles-0.25/rticles/man/figures/lifecycle-experimental.svg |only rticles-0.25/rticles/man/figures/lifecycle-maturing.svg |only rticles-0.25/rticles/man/figures/lifecycle-questioning.svg |only rticles-0.25/rticles/man/figures/lifecycle-soft-deprecated.svg |only rticles-0.25/rticles/man/figures/lifecycle-stable.svg |only rticles-0.25/rticles/man/figures/lifecycle-superseded.svg |only rticles-0.25/rticles/man/figures/logo.png |binary rticles-0.25/rticles/man/rjournal_article.Rd | 12 rticles-0.25/rticles/man/rticles-package.Rd | 8 rticles-0.25/rticles/man/string_to_table.Rd |only rticles-0.25/rticles/tests/testit/test-formats.R | 12 rticles-0.25/rticles/tests/testit/test-utils.R | 15 rticles-0.25/rticles/tests/testthat/_snaps |only rticles-0.25/rticles/tests/testthat/test-rjournal_article.R |only rticles-0.25/rticles/tests/testthat/test-utils.R |only 87 files changed, 2158 insertions(+), 599 deletions(-)
Title: Greenhouse Gas Flux Calculation from Chamber Measurements
Description: Functions for greenhouse gas flux calculation from chamber
measurements.
Author: Roland Fuss [aut, cre],
Roman Hueppi [ctb]
Maintainer: Roland Fuss <roland.fuss@thuenen.de>
Diff between gasfluxes versions 0.4-4 dated 2020-03-27 and 0.5 dated 2023-05-15
gasfluxes-0.4-4/gasfluxes/R/HMR.fit1.R |only gasfluxes-0.4-4/gasfluxes/R/HMRorig.R |only gasfluxes-0.4-4/gasfluxes/man/HMR.orig.Rd |only gasfluxes-0.5/gasfluxes/DESCRIPTION | 28 gasfluxes-0.5/gasfluxes/MD5 | 73 gasfluxes-0.5/gasfluxes/NAMESPACE | 79 gasfluxes-0.5/gasfluxes/NEWS.md | 90 gasfluxes-0.5/gasfluxes/R/HMR.R | 263 gasfluxes-0.5/gasfluxes/R/NDFE.R | 247 gasfluxes-0.5/gasfluxes/R/aggfluxes.R | 118 gasfluxes-0.5/gasfluxes/R/checkInput.R | 86 gasfluxes-0.5/gasfluxes/R/fluxMeas.R | 28 gasfluxes-0.5/gasfluxes/R/gasfluxes-package.R | 35 gasfluxes-0.5/gasfluxes/R/gasfluxes.R | 702 gasfluxes-0.5/gasfluxes/R/linear.R | 173 gasfluxes-0.5/gasfluxes/R/roblinear.R | 160 gasfluxes-0.5/gasfluxes/R/utilities.R | 36 gasfluxes-0.5/gasfluxes/build/vignette.rds |binary gasfluxes-0.5/gasfluxes/inst/doc/gasfluxes-howto.R | 90 gasfluxes-0.5/gasfluxes/inst/doc/gasfluxes-howto.Rmd | 296 gasfluxes-0.5/gasfluxes/inst/doc/gasfluxes-howto.html | 1099 - gasfluxes-0.5/gasfluxes/man/HMR.fit.Rd | 200 gasfluxes-0.5/gasfluxes/man/NDFE.fit.Rd | 152 gasfluxes-0.5/gasfluxes/man/agg.fluxes.Rd | 78 gasfluxes-0.5/gasfluxes/man/erfc.Rd | 34 gasfluxes-0.5/gasfluxes/man/fluxMeas.Rd | 40 gasfluxes-0.5/gasfluxes/man/gasfluxes-package.Rd | 41 gasfluxes-0.5/gasfluxes/man/gasfluxes.Rd | 259 gasfluxes-0.5/gasfluxes/man/lin.fit.Rd | 107 gasfluxes-0.5/gasfluxes/man/rlin.fit.Rd | 99 gasfluxes-0.5/gasfluxes/man/selectfluxes.Rd | 166 gasfluxes-0.5/gasfluxes/tests/testthat.R | 8 gasfluxes-0.5/gasfluxes/tests/testthat/test_aggfluxes.R | 36 gasfluxes-0.5/gasfluxes/tests/testthat/test_checkInput.R | 170 gasfluxes-0.5/gasfluxes/tests/testthat/test_fitting.R | 215 gasfluxes-0.5/gasfluxes/tests/testthat/test_gasfluxes.R | 314 gasfluxes-0.5/gasfluxes/vignettes/fluxmeas.csv |10602 +++++++-------- gasfluxes-0.5/gasfluxes/vignettes/gasfluxes-howto.Rmd | 296 gasfluxes-0.5/gasfluxes/vignettes/pics |only 39 files changed, 8137 insertions(+), 8283 deletions(-)
More information about weatherindices at CRAN
Permanent link
Title: Parametric Statistical Modelling and Inference for the
'spatstat' Family
Description: Functionality for parametric statistical modelling and inference for spatial data,
mainly spatial point patterns, in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Supports parametric modelling, formal statistical inference, and model validation.
Parametric models include Poisson point processes, Cox point processes, Neyman-Scott cluster processes, Gibbs point processes and determinantal point processes. Models can be fitted to data using maximum likelihood, maximum pseudolikelihood, maximum composite likelihood and the method of minimum contrast. Fitted models can be simulated and predicted. Formal inference includes hypothesis tests (quadrat counting tests, Cressie-Read tests, Clark-Evans test, Berman test, Diggle-Cressie-Loosmore-Ford test, scan test, studentised permutation test, segregation test, ANOVA tests of fitted models, adjusted composite likelihood ratio test, envelope t [...truncated...]
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Achmad Choiruddin [ctb, cph],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Julian Gilbey [ctb],
Yongtao [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.model versions 3.2-3 dated 2023-04-21 and 3.2-4 dated 2023-05-15
DESCRIPTION | 14 +++++++------- MD5 | 28 ++++++++++++++-------------- NEWS | 21 +++++++++++++++++++++ R/envelope.R | 2 +- R/evidence.R | 10 +++++++--- R/leverage.R | 14 ++++++++++---- R/predict.ppm.R | 8 +++++--- R/rhohat.R | 5 +++-- R/sysdata.rda |binary inst/doc/packagesizes.txt | 2 ++ man/berman.test.Rd | 4 ++-- man/cdf.test.Rd | 4 +++- man/predict.ppm.Rd | 5 +++++ man/rhohat.Rd | 5 +++-- man/spatstat.model-internal.Rd | 4 ++-- 15 files changed, 85 insertions(+), 41 deletions(-)
More information about spatstat.model at CRAN
Permanent link
Title: Fitting of Complementary Risk Models
Description: Evaluates the probability density function (PDF), cumulative distribution function (CDF), quantile function (QF), random numbers and maximum likelihood estimates (MLEs) of well-known complementary binomial-G, complementary negative binomial-G and complementary geometric-G families of distributions taking baseline models such as exponential, extended exponential, Weibull, extended Weibull, Fisk, Lomax, Burr-XII and Burr-X. The functions also allow computing the goodness-of-fit measures namely the Akaike-information-criterion (AIC), the Bayesian-information-criterion (BIC), the minimum value of the negative log-likelihood (-2L) function, Anderson-Darling (A) test, Cramer-Von-Mises (W) test, Kolmogorov-Smirnov test, P-value and convergence status. Moreover, some commonly used data sets from the fields of actuarial, reliability, and medical science are also provided. Related works include:
a) Tahir, M. H., & Cordeiro, G. M. (2016). Compounding of distributions: a survey and new gener [...truncated...]
Author: Muhammad Imran [aut, cre],
M.H Tahir [aut]
Maintainer: Muhammad Imran <imranshakoor84@yahoo.com>
Diff between ComRiskModel versions 0.1.0 dated 2023-05-08 and 0.2.0 dated 2023-05-15
DESCRIPTION | 8 ++-- MD5 | 74 ++++++++++++++++++++++---------------------- R/qCEWBio.R | 2 - R/qCEWGeo.R | 2 - R/qCEWNB.R | 2 - R/qCWBio.R | 2 - R/qCWGeo.R | 2 - R/qCWNB.R | 2 - man/CB12Bio.Rd | 12 +++---- man/CB12Geo.Rd | 4 +- man/CB12NB.Rd | 8 ++-- man/CBXBio.Rd | 4 +- man/CBXGeo.Rd | 4 +- man/CBXNB.Rd | 4 +- man/CEEBio.Rd | 5 +- man/CEEGeo.Rd | 4 +- man/CEENB.Rd | 8 ++-- man/CEWBio.Rd | 11 ++---- man/CEWGeo.Rd | 10 ++--- man/CEWNB.Rd | 4 +- man/CExpBio.Rd | 4 +- man/CExpGeo.Rd | 4 +- man/CExpNB.Rd | 4 +- man/CFBio.Rd | 4 +- man/CFGeo.Rd | 4 +- man/CFNB.Rd | 4 +- man/CLBio.Rd | 4 +- man/CLGeo.Rd | 4 +- man/CLNB.Rd | 4 +- man/CWBio.Rd | 4 +- man/CWGeo.Rd | 4 +- man/CWNB.Rd | 4 +- man/ComRiskModel-package.Rd | 4 +- man/acfailure.Rd | 4 +- man/acfailureunit.Rd | 4 +- man/actuarialm.Rd | 4 +- man/acutebcancer.Rd | 4 +- man/airborne.Rd | 4 +- 38 files changed, 122 insertions(+), 122 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-05 0.2.0
Title: Interface to the 'OpenBUGS' MCMC Software
Description: Fully-interactive R interface to the 'OpenBUGS' software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on x86Linux and on 64-bit R under Windows are in "beta" status and less efficient.
Author: OpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson.
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>
Diff between BRugs versions 0.9-1 dated 2021-09-24 and 0.9-2 dated 2023-05-15
DESCRIPTION | 10 - MD5 | 18 +- man/BRugs.Rd | 7 man/model.factory.Rd | 4 man/model.update.Rd | 5 src/BugsHelper.c | 74 ++++++-- tests/BRugs.Rout.save | 2 tests/examples.Rout.save | 2 tests/functions.R | 8 tests/functions.Rout.save | 381 +++++++++++++++++++++++----------------------- 10 files changed, 278 insertions(+), 233 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-06 5.0.0
2022-11-10 4.1.1
2022-10-26 4.1.0
2021-10-05 4.0.1
2021-02-23 4.0.0
2020-07-02 3.1.0
2020-02-11 3.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-26 2.2.2
2022-11-18 2.2.1
2022-02-15 2.2.0
2020-10-29 2.1.0
2020-08-26 2.0.1
2020-08-16 2.0.0
2017-04-22 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-01 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-23 0.1.1
2020-03-16 0.1.0
2017-05-17 0.0.4
2017-04-07 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-23 0.3.1
2023-02-28 0.3.0
2022-12-02 0.2.1
2022-11-18 0.2.0
2021-11-03 0.1.3
2021-11-02 0.1.2
2021-01-07 0.1.1
2020-01-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-22 1.1-11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-21 1.4.0
2022-10-18 1.3.0
2022-06-23 1.2.0
2021-12-17 1.1.0
2021-06-16 1.0.0
2020-11-16 0.1.1
2020-11-12 0.1.0
2020-03-08 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-05 1.0.0
2022-10-22 0.0.2
2021-05-07 0.0.1
Title: Discover and Install Useful RStudio Addins
Description: Browse through a continuously updated list of existing RStudio
addins and install/uninstall their corresponding packages.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between addinslist versions 0.4.0 dated 2021-01-10 and 0.5.0 dated 2023-05-15
DESCRIPTION | 9 ++--- MD5 | 8 ++-- NEWS.md | 4 ++ R/utils.R | 2 - README.md | 107 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++- 5 files changed, 119 insertions(+), 11 deletions(-)