Wed, 24 May 2023

Package Rwhois updated to version 1.0.14 with previous version 1.0.12 dated 2022-07-13

Title: WHOIS Server Querying
Description: Queries data from WHOIS servers.
Author: Brad Cable
Maintainer: Brad Cable <brad@bcable.net>

Diff between Rwhois versions 1.0.12 dated 2022-07-13 and 1.0.14 dated 2023-05-24

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Package EBglmnet updated to version 6.0 with previous version 5.3 dated 2023-05-13

Title: Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
Description: Provides empirical Bayesian lasso and elastic net algorithms for variable selection and effect estimation. Key features include sparse variable selection and effect estimation via generalized linear regression models, high dimensionality with p>>n, and significance test for nonzero effects. This package outperforms other popular methods such as lasso and elastic net methods in terms of power of detection, false discovery rate, and power of detecting grouping effects. Please reference its use as A Huang and D Liu (2016) <doi: 10.1093/bioinformatics/btw143>.
Author: Anhui Huang, Dianting Liu
Maintainer: Anhui Huang <anhuihuang@gmail.com>

Diff between EBglmnet versions 5.3 dated 2023-05-13 and 6.0 dated 2023-05-24

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Package learnr updated to version 0.11.4 with previous version 0.11.3 dated 2023-03-15

Title: Interactive Tutorials for R
Description: Create interactive tutorials using R Markdown. Use a combination of narrative, figures, videos, exercises, and quizzes to create self-paced tutorials for learning about R and R packages.
Author: Garrick Aden-Buie [aut, cre] , Barret Schloerke [aut] , JJ Allaire [aut, ccp], Alexander Rossell Hayes [aut] , Nischal Shrestha [ctb] , Angela Li [ctb] , Posit, PBC [cph, fnd], Ajax.org B.V. [ctb, cph] , Zeno Rocha [ctb, cph] , Nick Payne [ctb, cph] [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@posit.co>

Diff between learnr versions 0.11.3 dated 2023-03-15 and 0.11.4 dated 2023-05-24

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Package gginnards updated to version 0.1.2 with previous version 0.1.1 dated 2022-10-15

Title: Explore the Innards of 'ggplot2' Objects
Description: Extensions to 'ggplot2' providing low-level debug tools: statistics and geometries echoing their data argument. Layer manipulation: deletion, insertion, extraction and reordering of layers. Deletion of unused variables from the data object embedded in "ggplot" objects.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

Diff between gginnards versions 0.1.1 dated 2022-10-15 and 0.1.2 dated 2023-05-24

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New package lightsout with initial version 0.3.1
Package: lightsout
Title: Implementation of the 'Lights Out' Puzzle Game
Version: 0.3.1
Description: Lights Out is a puzzle game consisting of a grid of lights that are either on or off. Pressing any light will toggle it and its adjacent lights. The goal of the game is to switch all the lights off. This package provides an interface to play the game on different board sizes, both through the command line or with a visual application. Puzzles can also be solved using the automatic solver included. View a demo online at <https://daattali.com/shiny/lightsout/>.
URL: https://github.com/daattali/lightsout
BugReports: https://github.com/daattali/lightsout/issues
Depends: R (>= 3.0.0)
Imports: magrittr (>= 1.5), shiny (>= 0.10.0), shinyjs (>= 0.3.0), stats, utils
Suggests: knitr (>= 1.7), testthat (>= 0.9.1), rmarkdown
License: MIT + file LICENSE
SystemRequirements: pandoc with https support
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2023-04-01 22:26:36 UTC; Dean-X1C
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Repository: CRAN
Date/Publication: 2023-04-02 15:10:02 UTC

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New package ezknitr with initial version 0.6.2
Package: ezknitr
Title: Avoid the Typical Working Directory Pain When Using 'knitr'
Version: 0.6.2
Description: An extension of 'knitr' that adds flexibility in several ways. One common source of frustration with 'knitr' is that it assumes the directory where the source file lives should be the working directory, which is often not true. 'ezknitr' addresses this problem by giving you complete control over where all the inputs and outputs are, and adds several other convenient features to make rendering markdown/HTML documents easier.
URL: https://docs.ropensci.org/ezknitr/, https://github.com/ropensci/ezknitr
BugReports: https://github.com/ropensci/ezknitr/issues
Depends: R (>= 3.0.2)
Imports: knitr (>= 1.7), markdown (>= 0.7), R.utils (>= 1.34.0)
Suggests: testthat (>= 0.9.1), rmarkdown
License: MIT + file LICENSE
SystemRequirements: pandoc with https support
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-04-01 22:53:44 UTC; Dean-X1C
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Repository: CRAN
Date/Publication: 2023-04-01 23:10:02 UTC

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Package tldr updated to version 0.3.0 with previous version 0.2.3 dated 2021-07-28

Title: T Loux Doing R: Functions to Simplify Data Analysis and Reporting
Description: Gives a number of functions to aid common data analysis processes and reporting statistical results in an 'RMarkdown' file. Data analysis functions combine multiple base R functions used to describe simple bivariate relationships into a single, easy to use function. Reporting functions will return character strings to report p-values, confidence intervals, and hypothesis test and regression results. Strings will be LaTeX-formatted as necessary and will knit pretty in an 'RMarkdown' document. The package also provides a wrapper for the CreateTableOne() function in the 'tableone' package to make the results knit-able.
Author: Travis Loux [aut, cre]
Maintainer: Travis Loux <travis.loux@slu.edu>

Diff between tldr versions 0.2.3 dated 2021-07-28 and 0.3.0 dated 2023-05-24

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Package styler updated to version 1.10.0 with previous version 1.9.1 dated 2023-03-04

Title: Non-Invasive Pretty Printing of R Code
Description: Pretty-prints R code without changing the user's formatting intent.
Author: Kirill Mueller [aut] , Lorenz Walthert [cre, aut], Indrajeet Patil [ctb]
Maintainer: Lorenz Walthert <lorenz.walthert@icloud.com>

Diff between styler versions 1.9.1 dated 2023-03-04 and 1.10.0 dated 2023-05-24

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 styler-1.10.0/styler/R/detect-alignment.R                                                                         |    7 
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Package statnet.common updated to version 4.9.0 with previous version 4.8.0 dated 2023-01-24

Title: Common R Scripts and Utilities Used by the Statnet Project Software
Description: Non-statistical utilities used by the software developed by the Statnet Project. They may also be of use to others.
Author: Pavel N. Krivitsky [aut, cre] , Skye Bender-deMoll [ctb], Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>

Diff between statnet.common versions 4.8.0 dated 2023-01-24 and 4.9.0 dated 2023-05-24

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Package rgeos updated to version 0.6-3 with previous version 0.6-2 dated 2023-03-02

Title: Interface to Geometry Engine - Open Source ('GEOS')
Description: Interface to Geometry Engine - Open Source ('GEOS') using the C 'API' for topology operations on geometries. Please note that 'rgeos' will be retired during October 2023, plan transition to 'sf' or 'terra' functions using 'GEOS' at your earliest convenience (see <https://r-spatial.org/r/2023/05/15/evolution4.html> and earlier blogs for guidance). The 'GEOS' library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on 'CRAN'. ('rgeos' >= 0.5-1): Up to and including 'GEOS' 3.7.1, topological operations succeeded with some invalid geometries for which the same operations fail from and including 'GEOS' 3.7.2. The 'checkValidity=' argument defaults and structure have been changed, from default FALSE to integer default '0L' for 'GEOS' < 3.7.2 (no check), '1L' 'GEOS' >= 3.7.2 (check and warn). A value of '2L' is also provided that may be used, assigned globally using 'set [...truncated...]
Author: Roger Bivand [cre, aut] , Colin Rundel [aut], Edzer Pebesma [ctb], Rainer Stuetz [ctb], Karl Ove Hufthammer [ctb], Patrick Giraudoux [ctb], Martin Davis [cph, ctb], Sandro Santilli [cph, ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

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Package GGMselect updated to version 0.1-12.6 with previous version 0.1-12.5 dated 2022-05-01

Title: Gaussian Graphs Models Selection
Description: Graph estimation in Gaussian Graphical Models, following the method developed by C. Giraud, S. Huet and N. Verzelen (2012) <doi:10.1515/1544-6115.1625>. The main functions return the adjacency matrix of an undirected graph estimated from a data matrix.
Author: Annie Bouvier, Christophe Giraud, Sylvie Huet, Verzelen N.
Maintainer: Benjamin Auder <benjamin.auder@universite-paris-saclay.fr>

Diff between GGMselect versions 0.1-12.5 dated 2022-05-01 and 0.1-12.6 dated 2023-05-24

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Package arcpullr updated to version 0.2.8 with previous version 0.2.7 dated 2022-08-30

Title: Pull Data from an 'ArcGIS REST' API
Description: Functions to efficiently query 'ArcGIS REST' APIs <https://developers.arcgis.com/rest/>. Both spatial and SQL queries can be used to retrieve data. Simple Feature (sf) objects are utilized to perform spatial queries. This package was neither produced nor is maintained by Esri.
Author: Paul Frater [aut, cre] , Zac Driscoll [aut]
Maintainer: Paul Frater <paul.frater@wisconsin.gov>

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 R/utilities.R                   |    5 -
 inst/doc/intro_to_arcpullr.html |   99 ++++++++++++---------------
 inst/doc/raster_layers.R        |    2 
 inst/doc/raster_layers.Rmd      |    3 
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 inst/doc/spatial_queries.R      |    2 
 inst/doc/spatial_queries.Rmd    |    3 
 inst/doc/spatial_queries.html   |  116 ++++++++++++++------------------
 man/example_urls.Rd             |only
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 man/sql_where.Rd                |   65 ++++++++---------
 vignettes/raster_layers.Rmd     |    3 
 vignettes/spatial_queries.Rmd   |    3 
 27 files changed, 709 insertions(+), 591 deletions(-)

More information about arcpullr at CRAN
Permanent link

Package scatterpie updated to version 0.2.0 with previous version 0.1.9 dated 2023-04-21

Title: Scatter Pie Plot
Description: Creates scatterpie plots, especially useful for plotting pies on a map.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>

Diff between scatterpie versions 0.1.9 dated 2023-04-21 and 0.2.0 dated 2023-05-24

 DESCRIPTION              |    8 +--
 MD5                      |    8 +--
 NEWS.md                  |    4 +
 build/vignette.rds       |binary
 inst/doc/scatterpie.html |  107 ++++++++++++++++++++++++-----------------------
 5 files changed, 67 insertions(+), 60 deletions(-)

More information about scatterpie at CRAN
Permanent link

Package scan updated to version 0.58 with previous version 0.57 dated 2023-02-24

Title: Single-Case Data Analyses for Single and Multiple Baseline Designs
Description: A collection of procedures for analysing, visualising, and managing single-case data. These include piecewise linear regression models, multilevel models, overlap indices ('PND', 'PEM', 'PAND', 'PET', 'tau-u', 'baseline corrected tau', 'CDC'), and randomization tests. Data preparation functions support outlier detection, handling missing values, scaling, truncation, rank transformation, and smoothing. An export function helps to generate html and latex tables in a publication friendly style. More details can be found in the online book 'Analyzing single-case data with R and scan', Juergen Wilbert (2013) <https://jazznbass.github.io/scan-Book/>.
Author: Juergen Wilbert [cre, aut] , Timo Lueke [aut]
Maintainer: Juergen Wilbert <juergen.wilbert@uni-potsdam.de>

Diff between scan versions 0.57 dated 2023-02-24 and 0.58 dated 2023-05-24

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 scan-0.58/scan/DESCRIPTION                      |   23 -
 scan-0.58/scan/MD5                              |  301 +++++++++++++-----------
 scan-0.58/scan/NAMESPACE                        |    3 
 scan-0.58/scan/NEWS.md                          |   28 +-
 scan-0.58/scan/R/add_l2.R                       |    7 
 scan-0.58/scan/R/as.data.frame.scdf.R           |    2 
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 scan-0.58/scan/R/autocorr.R                     |   25 -
 scan-0.58/scan/R/batch_apply.R                  |only
 scan-0.58/scan/R/cdc.R                          |  161 +++++++-----
 scan-0.58/scan/R/coefficents.sc_plm.R           |    2 
 scan-0.58/scan/R/convert.R                      |  228 ++++++++++--------
 scan-0.58/scan/R/corrected_tau.R                |   63 ++---
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 scan-0.58/scan/R/deprecated.R                   |   20 +
 scan-0.58/scan/R/describe.R                     |   34 +-
 scan-0.58/scan/R/design.R                       |  207 ++++++++--------
 scan-0.58/scan/R/estimate_design.R              |   74 ++---
 scan-0.58/scan/R/export.sc_hplm.R               |    2 
 scan-0.58/scan/R/export.sc_overlap.R            |   17 -
 scan-0.58/scan/R/export.sc_plm.R                |    2 
 scan-0.58/scan/R/export.scdf.R                  |   10 
 scan-0.58/scan/R/fill_missing.R                 |   39 +--
 scan-0.58/scan/R/hplm.R                         |   59 ++--
 scan-0.58/scan/R/inherit_roxygen_descriptions.R |   35 +-
 scan-0.58/scan/R/mplm.R                         |   80 +++---
 scan-0.58/scan/R/nap.R                          |   90 +++----
 scan-0.58/scan/R/outlier.R                      |   35 +-
 scan-0.58/scan/R/overlap.R                      |   75 ++---
 scan-0.58/scan/R/pand.R                         |   74 ++---
 scan-0.58/scan/R/pem.R                          |   14 -
 scan-0.58/scan/R/pet.R                          |   14 -
 scan-0.58/scan/R/pkg-package.R                  |    9 
 scan-0.58/scan/R/plm.R                          |  119 ++++-----
 scan-0.58/scan/R/plm_contrasts.R                |    6 
 scan-0.58/scan/R/plot.scdf.R                    |   73 +++--
 scan-0.58/scan/R/pnd.R                          |   12 
 scan-0.58/scan/R/power_test.R                   |   98 ++++---
 scan-0.58/scan/R/print.sc.R                     |   12 
 scan-0.58/scan/R/print.sc_mplm.R                |   23 +
 scan-0.58/scan/R/print.sc_nap.R                 |    8 
 scan-0.58/scan/R/print.sc_overlap.R             |   10 
 scan-0.58/scan/R/print.sc_plm.R                 |   26 +-
 scan-0.58/scan/R/print.scdf.R                   |    4 
 scan-0.58/scan/R/private_check.R                |   96 +++++--
 scan-0.58/scan/R/private_check_scdf.R           |   10 
 scan-0.58/scan/R/private_mc_function.R          |    6 
 scan-0.58/scan/R/private_options.R              |   31 +-
 scan-0.58/scan/R/private_prepare_scdf.R         |   10 
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 scan-0.58/scan/R/private_regression.R           |    6 
 scan-0.58/scan/R/private_utilities.R            |   18 -
 scan-0.58/scan/R/rand_test.R                    |   14 -
 scan-0.58/scan/R/random_scdf.R                  |    8 
 scan-0.58/scan/R/rci.R                          |   60 ++--
 scan-0.58/scan/R/sample_names.R                 |    8 
 scan-0.58/scan/R/scan-Data.R                    |   72 +----
 scan-0.58/scan/R/scan.R                         |    2 
 scan-0.58/scan/R/scdf-functions.R               |   46 +--
 scan-0.58/scan/R/scdf.R                         |   93 +++----
 scan-0.58/scan/R/scdf_attr.R                    |   33 ++
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 scan-0.58/scan/R/shinyscan.R                    |only
 scan-0.58/scan/R/smd.R                          |   57 ++--
 scan-0.58/scan/R/style_plot.R                   |  104 ++++----
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 scan-0.58/scan/man/autocorr.Rd                  |   13 -
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 scan-0.58/scan/man/cdc.Rd                       |   57 ++--
 scan-0.58/scan/man/coef.sc_plm.Rd               |    4 
 scan-0.58/scan/man/combine.Rd                   |   19 +
 scan-0.58/scan/man/convert.Rd                   |   25 +
 scan-0.58/scan/man/corrected_tau.Rd             |   58 +---
 scan-0.58/scan/man/deprecated-functions.Rd      |   17 -
 scan-0.58/scan/man/describe.Rd                  |   16 -
 scan-0.58/scan/man/design.Rd                    |  157 +++++-------
 scan-0.58/scan/man/dot-inheritParams.Rd         |   24 -
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 scan-0.58/scan/man/fill_missing.Rd              |   29 +-
 scan-0.58/scan/man/hplm.Rd                      |   36 +-
 scan-0.58/scan/man/mplm.Rd                      |   32 +-
 scan-0.58/scan/man/nap.Rd                       |   27 +-
 scan-0.58/scan/man/outlier.Rd                   |   24 -
 scan-0.58/scan/man/overlap.Rd                   |   33 +-
 scan-0.58/scan/man/pand.Rd                      |   57 ++--
 scan-0.58/scan/man/pem.Rd                       |   15 -
 scan-0.58/scan/man/pet.Rd                       |   17 -
 scan-0.58/scan/man/plm.Rd                       |   61 ++--
 scan-0.58/scan/man/plot.scdf.Rd                 |   57 ++--
 scan-0.58/scan/man/plot_rand.Rd                 |    2 
 scan-0.58/scan/man/pnd.Rd                       |   17 -
 scan-0.58/scan/man/power_test.Rd                |   32 +-
 scan-0.58/scan/man/print.sc.Rd                  |    9 
 scan-0.58/scan/man/print.scdf.Rd                |    4 
 scan-0.58/scan/man/rand_test.Rd                 |   13 -
 scan-0.58/scan/man/random_scdf.Rd               |    6 
 scan-0.58/scan/man/ranks.Rd                     |   12 
 scan-0.58/scan/man/rci.Rd                       |   26 --
 scan-0.58/scan/man/read_scdf.Rd                 |    4 
 scan-0.58/scan/man/scan-package.Rd              |    3 
 scan-0.58/scan/man/scdf.Rd                      |   55 +---
 scan-0.58/scan/man/scdf_attr.Rd                 |   13 -
 scan-0.58/scan/man/select_cases.Rd              |    4 
 scan-0.58/scan/man/select_phases.Rd             |   14 -
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 scan-0.58/scan/man/tau_u.Rd                     |   69 ++---
 scan-0.58/scan/man/transform.scdf.Rd            |    2 
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 scan-0.58/scan/man/truncate_phase.Rd            |   10 
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 180 files changed, 2275 insertions(+), 2028 deletions(-)

More information about scan at CRAN
Permanent link

Package rStrava updated to version 1.2.0 with previous version 1.1.4 dated 2021-10-27

Title: Access the 'Strava' API
Description: Functions to access data from the 'Strava v3 API' <https://developers.strava.com/>.
Author: Marcus W. Beck [cre], Pedro Villarroel [aut], Daniel Padfield [aut], Lorenzo Gaborini [aut], Niklas von Maltzahn [aut]
Maintainer: Marcus W. Beck <mbafs2012@gmail.com>

Diff between rStrava versions 1.1.4 dated 2021-10-27 and 1.2.0 dated 2023-05-24

 DESCRIPTION                        |   15 +++++++--------
 MD5                                |   32 ++++++++++++++++++--------------
 R/compile_activities.R             |   13 +++++++++----
 R/compile_activity_streams.R       |    4 ++--
 R/get_activity_streams.R           |    5 +++--
 R/get_heat_map.R                   |    8 ++++----
 R/get_streams.R                    |   14 +++++++++-----
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 man/get_streams.Rd                 |    4 ++--
 19 files changed, 57 insertions(+), 44 deletions(-)

More information about rStrava at CRAN
Permanent link

Package mlr3spatiotempcv updated to version 2.1.0 with previous version 2.0.3 dated 2022-11-18

Title: Spatiotemporal Resampling Methods for 'mlr3'
Description: Extends the mlr3 ML framework with spatio-temporal resampling methods to account for the presence of spatiotemporal autocorrelation (STAC) in predictor variables. STAC may cause highly biased performance estimates in cross-validation if ignored.
Author: Patrick Schratz [aut, cre] , Marc Becker [aut] , Jannes Muenchow [ctb] , Michel Lang [ctb]
Maintainer: Patrick Schratz <patrick.schratz@gmail.com>

Diff between mlr3spatiotempcv versions 2.0.3 dated 2022-11-18 and 2.1.0 dated 2023-05-24

 mlr3spatiotempcv-2.0.3/mlr3spatiotempcv/R/ResamplingRepeatedSptCVCluto.R                                                  |only
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 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/DESCRIPTION                                                                       |   17 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/MD5                                                                               |  215 +-
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/NAMESPACE                                                                         |    7 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/NEWS.md                                                                           |   11 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingRepeatedSpCVBlock.R                                                   |   48 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingRepeatedSpCVEnv.R                                                     |    2 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingSpCVBlock.R                                                           |   43 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingSpCVBuffer.R                                                          |   27 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/ResamplingSpCVEnv.R                                                             |    2 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/autoplot.R                                                                      |  130 -
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/autoplot_spcv_cstf.R                                                            |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/helper.R                                                                        |   41 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/R/zzz.R                                                                           |   10 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/README.md                                                                         |    2 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/build/partial.rdb                                                                 |binary
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/build/vignette.rds                                                                |binary
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/mlr3spatiotempcv.Rmd                                                     |    4 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/mlr3spatiotempcv.html                                                    |  127 -
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/spatiotemp-viz.Rmd                                                       |    2 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/inst/doc/spatiotemp-viz.html                                                      |   81 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingCV.Rd                                                      |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingCustomCV.Rd                                                |    1 
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 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSpCVEnv.Rd                                                 |    1 
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 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/autoplot.ResamplingSptCVCstf.Rd                                               |    1 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_repeated_spcv_block.Rd                                        |   61 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_repeated_spcv_env.Rd                                          |    6 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_spcv_block.Rd                                                 |   61 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_spcv_buffer.Rd                                                |   52 
 mlr3spatiotempcv-2.1.0/mlr3spatiotempcv/man/mlr_resamplings_spcv_env.Rd                                                   |    6 
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Permanent link

Package compareGroups updated to version 4.7.0 with previous version 4.6.0 dated 2022-11-18

Title: Descriptive Analysis by Groups
Description: Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Author: Isaac Subirana [aut, cre] , Joan Salvador [ctb]
Maintainer: Isaac Subirana <isubirana@imim.es>

Diff between compareGroups versions 4.6.0 dated 2022-11-18 and 4.7.0 dated 2023-05-24

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More information about compareGroups at CRAN
Permanent link

Package multinma updated to version 0.5.1 with previous version 0.5.0 dated 2022-08-29

Title: Bayesian Network Meta-Analysis of Individual and Aggregate Data
Description: Network meta-analysis and network meta-regression models for aggregate data, individual patient data, and mixtures of both individual and aggregate data using multilevel network meta-regression as described by Phillippo et al. (2020) <doi:10.1111/rssa.12579>. Models are estimated in a Bayesian framework using 'Stan'.
Author: David M. Phillippo [aut, cre]
Maintainer: David M. Phillippo <david.phillippo@bristol.ac.uk>

Diff between multinma versions 0.5.0 dated 2022-08-29 and 0.5.1 dated 2023-05-24

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More information about multinma at CRAN
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Package ispdata updated to version 1.1.2 with previous version 1.1 dated 2023-02-10

Title: Access Data from the Public Security Institute of the State of Rio De Janeiro
Description: Allows access to data from the Rio de Janeiro Public Security Institute (ISP), such as criminal statistics, data on gun seizures and femicide. The package also contains the spatial data of Pacifying Police Units (UPPs) and Integrated Public Safety Regions, Areas and Circumscriptions.
Author: Igor Laltuf [aut, cre] , Instituto de Seguranca Publica [aut, cph]
Maintainer: Igor Laltuf <igorlaltuf@gmail.com>

Diff between ispdata versions 1.1 dated 2023-02-10 and 1.1.2 dated 2023-05-24

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More information about ispdata at CRAN
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New package ctmcd with initial version 1.4.3
Package: ctmcd
Title: Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data
Version: 1.4.3
Date: 2023-05-24
Description: Estimation of Markov generator matrices from discrete-time observations. The implemented approaches comprise diagonal and weighted adjustment of matrix logarithm based candidate solutions as in Israel (2001) <doi:10.1111/1467-9965.00114> as well as a quasi-optimization approach. Moreover, the expectation-maximization algorithm and the Gibbs sampling approach of Bladt and Sorensen (2005) <doi:10.1111/j.1467-9868.2005.00508.x> are included.
License: GPL-3
Imports: Rcpp (>= 0.12.17), coda, expm, numDeriv
Suggests: knitr, rmarkdown, R.rsp
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr, R.rsp
NeedsCompilation: yes
Packaged: 2023-05-24 10:03:52 UTC; Stefan
Author: Marius Pfeuffer [aut, cre], Greig Smith [ctb], Goncalo dos Reis [ctb], Linda Moestel [ctb], Matthias Fischer [ctb]
Maintainer: Marius Pfeuffer <marius.pfeuffer@fau.de>
Repository: CRAN
Date/Publication: 2023-05-24 11:30:03 UTC

More information about ctmcd at CRAN
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Package boxfilter updated to version 0.2 with previous version 0.1 dated 2022-11-28

Title: Filter Noisy Data
Description: Noise filter based on determining the proportion of neighboring points. A false point will be rejected if it has only few neighbors, but accepted if the proportion of neighbors in a rectangular frame is high. The size of the rectangular frame as well as the cut-off value, i.e. of a minimum proportion of neighbor-points, may be supplied or can be calculated automatically. Originally designed for the cleaning of heart rates, but suitable for filtering any slowly-changing physiological variable.For more information see Signer (2010)<doi:10.1111/j.2041-210X.2009.00010.x>.
Author: Thomas Ruf [aut, cre]
Maintainer: Thomas Ruf <Thomas.P.Ruf@me.com>

Diff between boxfilter versions 0.1 dated 2022-11-28 and 0.2 dated 2023-05-24

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More information about boxfilter at CRAN
Permanent link

New package argo with initial version 3.0.2
Package: argo
Title: Accurate Estimation of Influenza Epidemics using Google Search Data
Version: 3.0.2
Date: 2023-05-23
Author: Shaoyang Ning, Shihao Yang, S. C. Kou
Maintainer: Shihao Yang <shihao.yang@isye.gatech.edu>
Description: Augmented Regression with General Online data (ARGO) for accurate estimation of influenza epidemics in United States on national level, regional level and state level. It replicates the method introduced in paper Yang, S., Santillana, M. and Kou, S.C. (2015) <doi:10.1073/pnas.1515373112>; Ning, S., Yang, S. and Kou, S.C. (2019) <doi:10.1038/s41598-019-41559-6>; Yang, S., Ning, S. and Kou, S.C. (2021) <doi:10.1038/s41598-021-83084-5>.
License: GPL-2
Imports: xts, glmnet, zoo, XML, xtable, Matrix, boot
Suggests: testthat
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2023-05-23 15:11:19 UTC; shihaoyang
Repository: CRAN
Date/Publication: 2023-05-24 11:20:14 UTC

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Package tactile updated to version 0.2.1 with previous version 0.2.0 dated 2018-04-23

Title: New and Extended Plots, Methods, and Panel Functions for 'lattice'
Description: Extensions to 'lattice', providing new high-level functions, methods for existing functions, panel functions, and a theme.
Author: Johan Larsson [aut, cre] , Deepayan Sarkar [ctb, cph] , Brian Ripley [ctb]
Maintainer: Johan Larsson <johanlarsson@outlook.com>

Diff between tactile versions 0.2.0 dated 2018-04-23 and 0.2.1 dated 2023-05-24

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New package Rmalschains with initial version 0.2-10
Package: Rmalschains
Maintainer: Christoph Bergmeir <c.bergmeir@decsai.ugr.es>
License: GPL-3
Title: Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains)
LinkingTo: Rcpp
LazyLoad: yes
Description: An implementation of an algorithm family for continuous optimization called memetic algorithms with local search chains (MA-LS-Chains), as proposed in Molina et al. (2010) <doi:10.1162/evco.2010.18.1.18102> and Molina et al. (2011) <doi:10.1007/s00500-010-0647-2>. Rmalschains is further discussed in Bergmeir et al. (2016) <doi:10.18637/jss.v075.i04>. Memetic algorithms are hybridizations of genetic algorithms with local search methods. They are especially suited for continuous optimization.
Version: 0.2-10
Depends: Rcpp (>= 0.9.10)
Suggests: inline
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2023-05-23 14:56:08 UTC; bergmeir
Author: Christoph Bergmeir [aut, cre, cph], Jose M. Benitez [ths], Daniel Molina [aut, cph], Robert Davies [ctb, cph] , Dirk Eddelbuettel [ctb, cph] , Nikolaus Hansen [ctb, cph] , Richard J. Wagner [ctb, cph]
Repository: CRAN
Date/Publication: 2023-05-24 09:40:05 UTC

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New package LCMCR with initial version 0.4.13
Package: LCMCR
Title: Bayesian Non-Parametric Latent-Class Capture-Recapture
Version: 0.4.13
Date: 2023-05-23
Author: Daniel Manrique-Vallier
Description: Bayesian population size estimation using non parametric latent-class models.
Maintainer: Daniel Manrique-Vallier <dmanriqu@indiana.edu>
License: GPL (>= 2)
Depends: R (>= 3.5.1)
Imports: methods
SystemRequirements: Gnu Scientific Library version >= 2.5
NeedsCompilation: yes
Packaged: 2023-05-24 03:07:58 UTC; dm
Repository: CRAN
Date/Publication: 2023-05-24 09:40:08 UTC

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New package grpSLOPE with initial version 0.3.3
Package: grpSLOPE
Title: Group Sorted L1 Penalized Estimation
Version: 0.3.3
Description: Group SLOPE (Group Sorted L1 Penalized Estimation) is a penalized linear regression method that is used for adaptive selection of groups of significant predictors in a high-dimensional linear model. The Group SLOPE method can control the (group) false discovery rate at a user-specified level (i.e., control the expected proportion of irrelevant among all selected groups of predictors). For additional information about the implemented methods please see Brzyski, Gossmann, Su, Bogdan (2018) <doi:10.1080/01621459.2017.1411269>.
License: GPL-3
URL: https://github.com/agisga/grpSLOPE
BugReports: https://github.com/agisga/grpSLOPE/issues
LinkingTo: Rcpp
Imports: Rcpp
Suggests: testthat, knitr, rmarkdown, pander, isotone, SLOPE
VignetteBuilder: knitr
NeedsCompilation: yes
Encoding: UTF-8
Packaged: 2023-05-23 22:23:46 UTC; alexej
Author: Alexej Gossmann [aut, cre], Damian Brzyski [aut], Weijie Su [aut], Malgorzata Bogdan [aut], Ewout van den Berg [ctb] , Emmanuel Candes [ctb] , Chiara Sabatti [ctb] , Evan Patterson [ctb]
Maintainer: Alexej Gossmann <alexej.go@googlemail.com>
Repository: CRAN
Date/Publication: 2023-05-24 09:40:02 UTC

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New package twingp with initial version 1.0
Package: twingp
Title: A Fast Global-Local Gaussian Process Approximation
Version: 1.0
Date: 2023-05-15
Description: A global-local approximation framework for large-scale Gaussian process modeling. This work is supported by U.S. NSF grants CMMI-1921646 and DMREF-1921873.
License: GPL (>= 2)
Copyright: Eigen C++ library copyright details: https://gitlab.com/libeigen/eigen , nanoflann C++ library copyright details: https://github.com/jlblancoc/nanoflann
Depends: R (>= 3.0.2)
Imports: Rcpp, nloptr (>= 1.2.0)
LinkingTo: Rcpp, nloptr (>= 1.2.0)
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2023-05-23 14:54:24 UTC; akhil
Author: Akhil Vakayil [aut, cre] , Roshan V. Joseph [aut, ths]
Maintainer: Akhil Vakayil <akhilv@gatech.edu>
Repository: CRAN
Date/Publication: 2023-05-24 08:20:02 UTC

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New package TFunHDDC with initial version 1.0.0
Package: TFunHDDC
Title: Clustering of Functional Data via Mixtures of t-Distributions
Version: 1.0.0
Date: 2023-05-23
Depends: fda.usc, R (>= 3.5.0)
Imports: tclust, stringr, MASS, fda
Description: Extension of 'funHDDC' Schmutz et al. (2018) <doi:10.1007/s00180-020-00958-4> for cases including outliers by fitting t-distributions for robust groups. 'TFunHDDC' can cluster univariate or multivariate data produced by the 'fda' package for data using a b-splines or Fourier basis.
License: GPL-3
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
Packaged: 2023-05-23 21:09:45 UTC; iain
Repository: CRAN
Author: Cristina Anton [aut, cre], Iain Smith [aut], Malcolm Nielsen [aut], Jeffrey Andrews [ctb], Jaymeson Wickins [ctb], Nicholas Boers [ctb], Paul McNicholas [ctb], Amandine Schmutz [ctb], Julien Jacques [ctb], Charles Bouveyron [ctb]
Maintainer: Cristina Anton <popescuc@macewan.ca>
Date/Publication: 2023-05-24 09:00:05 UTC

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Package SWTools updated to version 1.0 with previous version 0.2.5 dated 2023-04-05

Title: Helper Tools for Australian Hydrologists
Description: Functions to speed up work flow for hydrological analysis. Focused on Australian climate data (SILO climate data), hydrological models (eWater Source) and in particular South Australia (<https://water.data.sa.gov.au> hydrological data).
Author: Matt Gibbs [aut, cre]
Maintainer: Matt Gibbs <gibbs.ms@gmail.com>

Diff between SWTools versions 0.2.5 dated 2023-04-05 and 1.0 dated 2023-05-24

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Package sf updated to version 1.0-13 with previous version 1.0-12 dated 2023-03-19

Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial vector data. Binds to 'GDAL' for reading and writing data, to 'GEOS' for geometrical operations, and to 'PROJ' for projection conversions and datum transformations. Uses by default the 's2' package for spherical geometry operations on ellipsoidal (long/lat) coordinates.
Author: Edzer Pebesma [aut, cre] , Roger Bivand [ctb] , Etienne Racine [ctb], Michael Sumner [ctb], Ian Cook [ctb], Tim Keitt [ctb], Robin Lovelace [ctb], Hadley Wickham [ctb], Jeroen Ooms [ctb] , Kirill Mueller [ctb], Thomas Lin Pedersen [ctb], Dan Baston [c [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

Diff between sf versions 1.0-12 dated 2023-03-19 and 1.0-13 dated 2023-05-24

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New package RBE3 with initial version 1.0
Package: RBE3
Title: Estimation and Additional Tools for Quantile Generalized Beta Regression Model
Version: 1.0
Date: 2023-05-20
Author: Diego Gallardo [aut, cre], Marcelo Bourguignon [aut]
Maintainer: Diego Gallardo <diego.gallardo@uda.cl>
Description: Provide estimation and data generation tools for the quantile generalized beta regression model. For details, see Bourguignon, Gallardo and Saulo <arXiv:2110.04428> The package also provides tools to perform covariates selection.
Depends: R (>= 4.0.0), stats
Imports: pracma, gtools
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2023-05-23 15:13:10 UTC; Diego
Repository: CRAN
Date/Publication: 2023-05-24 08:30:06 UTC

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New package pgenlibr with initial version 0.3.3
Package: pgenlibr
Title: PLINK 2 Binary (.pgen) Reader
Version: 0.3.3
Date: 2023-05-23
Description: A thin wrapper over PLINK 2's core libraries which provides an R interface for reading .pgen files. A minimal .pvar loader is also included. Chang et al. (2015) <doi:10.1186/s13742-015-0047-8>.
License: LGPL (>= 3)
Copyright: This package includes sources of the libdeflate library owned by Eric Biggers, sources of the SIMDe library owned by Evan Nemerson, sources of the Zstd library owned by Meta Platforms, Inc., and sources of the pgenlib library owned by Christopher Chang.
BugReports: https://github.com/chrchang/plink-ng/issues
Imports: Rcpp (>= 1.0.1)
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2023-05-23 14:23:11 UTC; chrchang
Author: Christopher Chang [aut, cre], Eric Biggers [ctb, cph] , Yann Collet [ctb] , Meta Platforms, Inc. [cph] , Evan Nemerson [ctb, cph] , Przemyslaw Skibinski [ctb] , Nick Terrell [ctb]
Maintainer: Christopher Chang <chrchang@alumni.caltech.edu>
Repository: CRAN
Date/Publication: 2023-05-24 08:20:05 UTC

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New package multibreakeR with initial version 0.1.0
Package: multibreakeR
Title: Tests for a Structural Change in Multivariate Time Series
Version: 0.1.0
Description: Flexible implementation of a structural change point detection algorithm for multivariate time series. It authorizes inclusion of trends, exogenous variables, and break test on the intercept or on the full vector autoregression system. Bai, Lumsdaine, and Stock (1998) <doi:10.1111/1467-937X.00051>.
License: GPL
Language: en-US
Imports: dplyr, ggplot2, reshape2, rlang (>= 0.4.11), scales, stats
Suggests: knitr, rmarkdown, roxygen2, testthat (>= 3.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
URL: https://github.com/loicym/multibreakeR
NeedsCompilation: no
Packaged: 2023-05-23 11:10:22 UTC; loicy
Author: Loic Marechal [cre, aut]
Maintainer: Loic Marechal <loic.marechal@unil.ch>
Depends: R (>= 3.5.0)
Repository: CRAN
Date/Publication: 2023-05-24 08:20:08 UTC

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Package lavaanExtra updated to version 0.1.6 with previous version 0.1.4 dated 2023-02-04

Title: Convenience Functions for Package 'lavaan'
Description: Affords an alternative, vector-based syntax to 'lavaan', as well as other convenience functions such as naming paths and defining indirect links automatically, in addition to convenience formatting optimized for a publication and script sharing workflow.
Author: Remi Theriault [aut, cre]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>

Diff between lavaanExtra versions 0.1.4 dated 2023-02-04 and 0.1.6 dated 2023-05-24

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New package JUMP with initial version 1.0.1
Package: JUMP
Title: Replicability Analysis of High-Throughput Experiments
Version: 1.0.1
Description: Implementing a computationally scalable false discovery rate control procedure for replicability analysis based on maximum of p-values. Please cite the manuscript corresponding to this package [Lyu, P. et al., (2023), <https://www.biorxiv.org/content/10.1101/2023.02.13.528417v2>].
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.1.2), Rcpp, splines, stats
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2023-05-23 13:38:20 UTC; P53
Author: Pengfei Lyu [aut, ctb], Yan Li [aut, cre, cph], Xiaoquan Wen [aut], Hongyuan Cao [aut, ctb]
Maintainer: Yan Li <yanli_@jlu.edu.cn>
Repository: CRAN
Date/Publication: 2023-05-24 08:10:08 UTC

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New package ggautomap with initial version 0.3.2
Package: ggautomap
Title: Create Maps from a Column of Place Names
Version: 0.3.2
Description: Mapping tools that convert place names to coordinates on the fly. These 'ggplot2' extensions make maps from a data frame where one of the columns contains place names, without having to directly work with the underlying geospatial data and tools. The corresponding map data must be registered with 'cartographer' either by the user or by another package.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.1),
Imports: cartographer (>= 0.2), cli (>= 3.4.0), dplyr (>= 1.0.0), ggmapinset (>= 0.3), ggplot2 (>= 3.4.2), packcircles (>= 0.3.4), rlang (>= 1.0.0), sf (>= 1.0), tidyr (>= 1.2.0), vctrs (>= 0.4.0)
URL: https://github.com/cidm-ph/ggautomap, https://cidm-ph.github.io/ggautomap/
BugReports: https://github.com/cidm-ph/ggautomap/issues
Suggests: ggrepel, knitr, nswgeo, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-05-23 23:15:45 UTC; csuster
Author: Carl Suster [aut, cre] , Western Sydney Local Health District, NSW Health [cph]
Maintainer: Carl Suster <Carl.Suster@health.nsw.gov.au>
Repository: CRAN
Date/Publication: 2023-05-24 09:00:02 UTC

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New package faersquarterlydata with initial version 1.0.0
Package: faersquarterlydata
Title: FDA Adverse Event Reporting System Quarterly Data Extracting Tool
Version: 1.0.0
Maintainer: Luis Garcez <luisgarcez1@gmail.com>
Description: An easy framework to read FDA Adverse Event Reporting System XML/ASCII files <https://www.fda.gov/drugs/questions-and-answers-fdas-adverse-event-reporting-system-faers/fda-adverse-event-reporting-system-faers-latest-quarterly-data-files>.
License: GPL (>= 3)
Imports: data.table, tibble, xml2, tableone, tidyr, dplyr, stringr, stats, utils
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
Suggests: testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2023-05-23 15:42:31 UTC; luis.ferreira
Author: Luis Garcez [aut, cre, cph] , Luisa Prada [aut]
Repository: CRAN
Date/Publication: 2023-05-24 08:40:03 UTC

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New package Bayenet with initial version 0.1
Package: Bayenet
Title: Bayesian Quantile Elastic Net for Genetic Study
Version: 0.1
Date: 2023-05-17
Description: As heavy-tailed error distribution and outliers in the response variable widely exist, models which are robust to data contamination are highly demanded. Here, we develop a novel robust Bayesian variable selection method with elastic net penalty for quantile regression in genetic analysis. In particular, the spike-and-slab priors have been incorporated to impose sparsity. An efficient Gibbs sampler has been developed to facilitate computation.The core modules of the package have been developed in 'C++' and R.
Depends: R (>= 3.5.0)
License: GPL-2
Encoding: UTF-8
LazyData: true
LinkingTo: Rcpp, RcppArmadillo
Imports: Rcpp, stats, MCMCpack, base, gsl, VGAM, MASS, hbmem, SuppDists
NeedsCompilation: yes
Repository: CRAN
Packaged: 2023-05-23 22:04:42 UTC; grimf
Author: Xi Lu [aut, cre], Cen Wu [aut]
Maintainer: Xi Lu <xilu@ksu.edu>
Date/Publication: 2023-05-24 09:00:08 UTC

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New package WeightedPortTest with initial version 1.1
Package: WeightedPortTest
Title: Weighted Portmanteau Tests for Time Series Goodness-of-Fit
Version: 1.1
Date: 2023-05-23
Description: An implementation of the Weighted Portmanteau Tests described in "New Weighted Portmanteau Statistics for Time Series Goodness-of-Fit Testing" published by the Journal of the American Statistical Association, Volume 107, Issue 498, pages 777-787, 2012.
License: GPL (>= 3)
LazyLoad: yes
NeedsCompilation: no
Packaged: 2023-05-24 02:16:32 UTC; fishert4
Author: Thomas J. Fisher [aut, cre] , Colin M. Gallagher [aut]
Maintainer: Thomas J. Fisher <fishert4@miamioh.edu>
Repository: CRAN
Date/Publication: 2023-05-24 07:10:02 UTC

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New package standby with initial version 0.1.0
Package: standby
Title: Alerts, Notifications and Loading Screen in 'Shiny'
Version: 0.1.0
Description: Easily create alerts, notifications, modals, info tips and loading screens in 'Shiny'. Includes several options to customize alerts and notifications by including text, icons, images and buttons. When wrapped around a 'Shiny' output, loading screen is automatically displayed while the output is being recalculated.
Depends: R(>= 3.3)
Imports: grDevices, htmltools, shiny
Suggests: rmarkdown, kableExtra, knitr, testthat (>= 3.0.0), covr
License: GPL (>= 3)
URL: https://standby.rsquaredacademy.com/, https://github.com/rsquaredacademy/standby
BugReports: https://github.com/rsquaredacademy/standby/issues
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-05-23 08:50:39 UTC; HP
Author: Aravind Hebbali [aut, cre], Zong Bin [ctb, cph] , Tobias Ahlin [ctb, cph] , https://github.com/RIDICS [ctb, cph] , Raphael Fabini [ctb, cph] , Luke Hass [ctb, cph] , Mohammad Younes [ctb, cph] , Nick Payne [ctb, cph] , Indrashish Ghosh [ctb, cph] , h [...truncated...]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Repository: CRAN
Date/Publication: 2023-05-24 07:50:02 UTC

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New package sasr with initial version 0.1.2
Package: sasr
Title: 'SAS' Interface
Version: 0.1.2
Date: 2023-04-26
Description: Provides a 'SAS' interface, through 'SASPy'(<https://sassoftware.github.io/saspy/>) and 'reticulate'(<https://rstudio.github.io/reticulate/>). This package helps you create 'SAS' sessions, execute 'SAS' code in remote 'SAS' servers, retrieve execution results and log, and exchange datasets between 'SAS' and 'R'. It also helps you to install 'SASPy' and create a configuration file for the connection. Please review the 'SASPy' license file as instructed so that you comply with its separate and independent license.
License: Apache License 2.0
URL: https://github.com/insightsengineering/sasr/
BugReports: https://github.com/insightsengineering/sasr/issues
Depends: R (>= 3.6)
Imports: checkmate, reticulate
Suggests: knitr, mockery, testthat (>= 3.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
NeedsCompilation: no
Packaged: 2023-05-23 06:48:15 UTC; root
Author: Liming Li [aut, cre], Daniel Sabanes Bove [aut], Isaac Gravestock [aut], F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Liming Li <liming.li@roche.com>
Repository: CRAN
Date/Publication: 2023-05-24 07:50:06 UTC

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New package gdalraster with initial version 1.1.1
Package: gdalraster
Title: Bindings to the 'Geospatial Data Abstraction Library' Raster API
Version: 1.1.1
Description: Interface to the raster API of the 'Geospatial Data Abstraction Library' ('GDAL') supporting manual creation of uninitialized datasets, creation from existing raster as template, low level I/O, configuration of virtual raster (VRT), coordinate transformation, and access to 'gdalwarp' for reprojection. Convenience functions facilitate working with spatial reference systems. Calling signatures resemble the native C, C++ and Python APIs provided by the 'GDAL' project (<https://gdal.org>). Bindings to 'GDAL' are implemented in class 'GDALRaster' along with several stand-alone functions. Additional functionality includes: class 'RunningStats' for efficient summary statistics on large data streams; class 'CmbTable' for counting unique combinations of integer values with a hash table; a raster overlay utility to identify and count unique combinations across multiple inputs; and a calculation utility for evaluating an R expression on raster layers with pixel coordinates available as vari [...truncated...]
License: MIT + file LICENSE
Copyright: See file inst/COPYRIGHTS for details.
URL: https://github.com/USDAForestService/gdalraster, https://usdaforestservice.github.io/gdalraster/
BugReports: https://github.com/USDAForestService/gdalraster/issues
Depends: R (>= 3.4)
Imports: methods, tools, utils, Rcpp (>= 1.0.7)
LinkingTo: Rcpp
Suggests: xml2
NeedsCompilation: yes
SystemRequirements: GDAL (>= 2.3.0, built against GEOS), PROJ (>= 4.8.0)
Encoding: UTF-8
Packaged: 2023-05-20 04:57:55 UTC; ctoney
Author: Chris Toney [aut, cre], Frank Warmerdam [cph], Even Rouault [cph], Marius Appel [cph], Daniel James [cph], Peter Dimov [cph]
Maintainer: Chris Toney <chris.toney@usda.gov>
Repository: CRAN
Date/Publication: 2023-05-24 07:30:02 UTC

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Package DEPONS2R updated to version 1.2.1 with previous version 1.2.0 dated 2023-04-21

Title: Read, Plot and Analyse Output from the DEPONS Model
Description: Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.
Author: Jacob Nabe-Nielsen and Caitlin K. Frankish
Maintainer: Jacob Nabe-Nielsen <jnn@ecos.au.dk>

Diff between DEPONS2R versions 1.2.0 dated 2023-04-21 and 1.2.1 dated 2023-05-24

 DESCRIPTION       |    6 +++---
 MD5               |    4 ++--
 R/ships_methods.R |    9 +++++++++
 3 files changed, 14 insertions(+), 5 deletions(-)

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New package cstidy with initial version 2023.5.24
Package: cstidy
Title: Helpful Functions for Cleaning Surveillance Data
Version: 2023.5.24
Description: Helpful functions for the cleaning and manipulation of surveillance data, especially with regards to the creation and validation of panel data from individual level surveillance data.
Depends: R (>= 3.5.0)
License: MIT + file LICENSE
URL: https://www.csids.no/cstidy/, https://github.com/csids/cstidy
BugReports: https://github.com/csids/cstidy/issues
Encoding: UTF-8
LazyData: true
Imports: data.table, magrittr, ggplot2, csdata, cstime, crayon, digest, stringr, methods
Suggests: testthat, knitr, rmarkdown, rstudioapi, glue, gt, dplyr, purrr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-05-23 08:15:56 UTC; raw996
Author: Richard Aubrey White [aut, cre] , CSIDS [cph]
Maintainer: Richard Aubrey White <hello@rwhite.no>
Repository: CRAN
Date/Publication: 2023-05-24 07:40:02 UTC

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New package boxplotcluster with initial version 0.1
Package: boxplotcluster
Title: Clustering Method Based on Boxplot Statistics
Version: 0.1
Description: Following Arroyo-Maté-Roque (2006), the function calculates the distance between columns of the dataset using the generalized Minkowski metric as described by Ichino-Yaguchi (1994). The distance measure gives more weight to differences between quartiles than to differences between extremes, making it less sensitive to outliers. Further,the function calculates the silhouette width (Rousseeuw 1987) for different numbers of clusters and selects the number of clusters that maximizes the average silhouette width, unless a specific number of clusters is provided by the user. The approach implemented in this package is based on the following publications: Rousseeuw (1987) <doi:10.1016/0377-0427(87)90125-7>; Ichino-Yaguchi (1994) <doi:10.1109/21.286391>; Arroyo-Maté-Roque (2006) <doi:10.1007/3-540-34416-0_7>.
Depends: R (>= 4.0.0)
Imports: cluster (>= 2.1.4), graphics (>= 4.2.0), grDevices (>= 4.2.0), stats (>= 4.2.0)
License: GPL (>= 2)
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2023-05-22 15:00:38 UTC; gianmarcoalberti
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Repository: CRAN
Date/Publication: 2023-05-24 07:40:05 UTC

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New package ammistability with initial version 0.1.4
Package: ammistability
Title: Additive Main Effects and Multiplicative Interaction Model Stability Parameters
Version: 0.1.4
Description: Computes various stability parameters from Additive Main Effects and Multiplicative Interaction (AMMI) analysis results such as Modified AMMI Stability Value (MASV), Sums of the Absolute Value of the Interaction Principal Component Scores (SIPC), Sum Across Environments of Genotype-Environment Interaction Modelled by AMMI (AMGE), Sum Across Environments of Absolute Value of Genotype-Environment Interaction Modelled by AMMI (AV_(AMGE)), AMMI Stability Index (ASI), Modified ASI (MASI), AMMI Based Stability Parameter (ASTAB), Annicchiarico's D Parameter (DA), Zhang's D Parameter (DZ), Averages of the Squared Eigenvector Values (EV), Stability Measure Based on Fitted AMMI Model (FA), Absolute Value of the Relative Contribution of IPCs to the Interaction (Za). Further calculates the Simultaneous Selection Index for Yield and Stability from the computed stability parameters. See the vignette for complete list of citations for the methods implemented.
Copyright: 2017-2023, ICAR-DGR
License: GPL-2 | GPL-3
Encoding: UTF-8
Depends: R (>= 3.5.0)
VignetteBuilder: knitr
Imports: agricolae, ggcorrplot, ggplot2, methods, reshape2, stats, Rdpack, mathjaxr
Suggests: knitr, rmarkdown, pander, XML, httr, RCurl
URL: https://github.com/ajaygpb/ammistability/ https://CRAN.R-project.org/package=ammistability https://ajaygpb.github.io/ammistability/ https://doi.org/10.5281/zenodo.1344756
BugReports: https://github.com/ajaygpb/ammistability/issues
NeedsCompilation: no
Packaged: 2023-05-23 05:45:34 UTC; Aravind-DGC
Author: B. C. Ajay [aut, cre] , J. Aravind [aut] , R. Abdul Fiyaz [aut] , ICAR [cph]
Maintainer: B. C. Ajay <ajaygpb@yahoo.co.in>
Repository: CRAN
Date/Publication: 2023-05-24 07:40:08 UTC

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Package dlstats updated to version 0.1.7 with previous version 0.1.6 dated 2022-12-09

Title: Download Stats of R Packages
Description: Monthly download stats of 'CRAN' and 'Bioconductor' packages. Download stats of 'CRAN' packages is from the 'RStudio' 'CRAN mirror', see <https://cranlogs.r-pkg.org:443>. 'Bioconductor' package download stats is at <https://bioconductor.org/packages/stats/>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>

Diff between dlstats versions 0.1.6 dated 2022-12-09 and 0.1.7 dated 2023-05-24

 DESCRIPTION                |    8 
 MD5                        |   50 ++--
 NAMESPACE                  |   54 ++--
 R/app.R                    |   62 ++---
 R/bioc_stats.R             |  130 ++++++-----
 R/cran_stats.R             |  316 +++++++++++++--------------
 R/dlstats.R                |   36 +--
 R/plot_bioc_stats.R        |  196 ++++++++---------
 R/utilities.R              |   34 +-
 R/zzz.R                    |   20 -
 build/vignette.rds         |binary
 inst/biocApp/server.R      |   42 +--
 inst/biocApp/ui.R          |   46 ++--
 inst/cranApp/server.R      |   40 +--
 inst/cranApp/ui.R          |   46 ++--
 inst/doc/dlstats.R         |   82 +++----
 inst/doc/dlstats.Rmd       |  196 ++++++++---------
 inst/doc/dlstats.html      |  516 ++++++++++++++++++++++-----------------------
 man/biocApp.Rd             |   28 +-
 man/bioc_stats.Rd          |   64 ++---
 man/cranApp.Rd             |   28 +-
 man/cran_stats.Rd          |   60 ++---
 man/plot_bioc_stats.Rd     |   40 +--
 man/plot_cran_stats.Rd     |   40 +--
 man/set_cran_start_year.Rd |   34 +-
 vignettes/dlstats.Rmd      |  196 ++++++++---------
 26 files changed, 1187 insertions(+), 1177 deletions(-)

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