Mon, 29 May 2023

Package panelhetero updated to version 1.0.1 with previous version 1.0.0 dated 2023-04-20

Title: Panel Data Analysis with Heterogeneous Dynamics
Description: Understanding the dynamics of potentially heterogeneous variables is important in statistical applications. This package provides tools for estimating the degree of heterogeneity across cross-sectional units in the panel data analysis. The methods are developed by Okui and Yanagi (2019) <doi:10.1016/j.jeconom.2019.04.036> and Okui and Yanagi (2020) <doi:10.1093/ectj/utz019>.
Author: Ryo Okui [aut, cph], Takahide Yanagi [aut, cre, cph] , Heejun Lee [aut, cph]
Maintainer: Takahide Yanagi <yanagi@econ.kyoto-u.ac.jp>

Diff between panelhetero versions 1.0.0 dated 2023-04-20 and 1.0.1 dated 2023-05-29

 panelhetero-1.0.0/panelhetero/man/acor.Rd                     |only
 panelhetero-1.0.0/panelhetero/man/acov.Rd                     |only
 panelhetero-1.0.0/panelhetero/man/ecdfest.Rd                  |only
 panelhetero-1.0.0/panelhetero/man/error1.Rd                   |only
 panelhetero-1.0.0/panelhetero/man/error2.Rd                   |only
 panelhetero-1.0.0/panelhetero/man/error3.Rd                   |only
 panelhetero-1.0.0/panelhetero/man/hpj1_boot.Rd                |only
 panelhetero-1.0.0/panelhetero/man/hpj2_boot.Rd                |only
 panelhetero-1.0.0/panelhetero/man/hpjecdfest1.Rd              |only
 panelhetero-1.0.0/panelhetero/man/hpjecdfest2.Rd              |only
 panelhetero-1.0.0/panelhetero/man/hpjkdest1.Rd                |only
 panelhetero-1.0.0/panelhetero/man/hpjkdest2.Rd                |only
 panelhetero-1.0.0/panelhetero/man/hpjmomentest1.Rd            |only
 panelhetero-1.0.0/panelhetero/man/hpjmomentest2.Rd            |only
 panelhetero-1.0.0/panelhetero/man/kdest.Rd                    |only
 panelhetero-1.0.0/panelhetero/man/momentest.Rd                |only
 panelhetero-1.0.0/panelhetero/man/ne_boot.Rd                  |only
 panelhetero-1.0.0/panelhetero/man/toj0_boot.Rd                |only
 panelhetero-1.0.0/panelhetero/man/toj1_boot.Rd                |only
 panelhetero-1.0.0/panelhetero/man/toj2_boot.Rd                |only
 panelhetero-1.0.0/panelhetero/man/toj3_boot.Rd                |only
 panelhetero-1.0.0/panelhetero/man/toj4_boot.Rd                |only
 panelhetero-1.0.0/panelhetero/man/toj5_boot.Rd                |only
 panelhetero-1.0.0/panelhetero/man/tojecdfest0.Rd              |only
 panelhetero-1.0.0/panelhetero/man/tojecdfest1.Rd              |only
 panelhetero-1.0.0/panelhetero/man/tojecdfest2.Rd              |only
 panelhetero-1.0.0/panelhetero/man/tojecdfest3.Rd              |only
 panelhetero-1.0.0/panelhetero/man/tojecdfest4.Rd              |only
 panelhetero-1.0.0/panelhetero/man/tojecdfest5.Rd              |only
 panelhetero-1.0.0/panelhetero/man/tojkdest0.Rd                |only
 panelhetero-1.0.0/panelhetero/man/tojkdest1.Rd                |only
 panelhetero-1.0.0/panelhetero/man/tojkdest2.Rd                |only
 panelhetero-1.0.0/panelhetero/man/tojkdest3.Rd                |only
 panelhetero-1.0.0/panelhetero/man/tojkdest4.Rd                |only
 panelhetero-1.0.0/panelhetero/man/tojkdest5.Rd                |only
 panelhetero-1.0.0/panelhetero/man/tojmomentest0.Rd            |only
 panelhetero-1.0.0/panelhetero/man/tojmomentest1.Rd            |only
 panelhetero-1.0.0/panelhetero/man/tojmomentest2.Rd            |only
 panelhetero-1.0.0/panelhetero/man/tojmomentest3.Rd            |only
 panelhetero-1.0.0/panelhetero/man/tojmomentest4.Rd            |only
 panelhetero-1.0.0/panelhetero/man/tojmomentest5.Rd            |only
 panelhetero-1.0.1/panelhetero/DESCRIPTION                     |    7 
 panelhetero-1.0.1/panelhetero/LICENSE                         |    2 
 panelhetero-1.0.1/panelhetero/MD5                             |   83 +----
 panelhetero-1.0.1/panelhetero/NEWS.md                         |    4 
 panelhetero-1.0.1/panelhetero/R/basic.R                       |    4 
 panelhetero-1.0.1/panelhetero/R/density.R                     |    2 
 panelhetero-1.0.1/panelhetero/R/densityhpj.R                  |    4 
 panelhetero-1.0.1/panelhetero/R/densitytoj.R                  |   12 
 panelhetero-1.0.1/panelhetero/R/ecdf.R                        |    4 
 panelhetero-1.0.1/panelhetero/R/ecdfhpj.R                     |    8 
 panelhetero-1.0.1/panelhetero/R/ecdftoj.R                     |   24 +
 panelhetero-1.0.1/panelhetero/R/error.R                       |    6 
 panelhetero-1.0.1/panelhetero/R/moment.R                      |    2 
 panelhetero-1.0.1/panelhetero/R/momenthpj.R                   |    4 
 panelhetero-1.0.1/panelhetero/R/momenttoj.R                   |   12 
 panelhetero-1.0.1/panelhetero/README.md                       |   11 
 panelhetero-1.0.1/panelhetero/build/vignette.rds              |binary
 panelhetero-1.0.1/panelhetero/inst/doc/panelhetero.R          |   39 +-
 panelhetero-1.0.1/panelhetero/inst/doc/panelhetero.Rmd        |  124 ++++---
 panelhetero-1.0.1/panelhetero/inst/doc/panelhetero.html       |  164 ++++------
 panelhetero-1.0.1/panelhetero/vignettes/file59b43e2e372e.html |only
 panelhetero-1.0.1/panelhetero/vignettes/file6c6c55542bb.html  |only
 panelhetero-1.0.1/panelhetero/vignettes/panelhetero.Rmd       |  124 ++++---
 64 files changed, 355 insertions(+), 285 deletions(-)

More information about panelhetero at CRAN
Permanent link

Package gptstudio updated to version 0.2.0 with previous version 0.1.0 dated 2023-03-20

Title: Use Large Language Models Directly in your Development Environment
Description: Large language models are readily accessible via API. This package lowers the barrier to use the API inside of your development environment. For more on the API, see <https://platform.openai.com/docs/introduction>.
Author: Michel Nivard [aut, cph], James Wade [aut, cre, cph] , Samuel Calderon [aut]
Maintainer: James Wade <github@jameshwade.com>

Diff between gptstudio versions 0.1.0 dated 2023-03-20 and 0.2.0 dated 2023-05-29

 gptstudio-0.1.0/gptstudio/R/app_chat_gpt.R                       |only
 gptstudio-0.1.0/gptstudio/inst/templates                         |only
 gptstudio-0.1.0/gptstudio/man/make_chat_history.Rd               |only
 gptstudio-0.1.0/gptstudio/tests/testthat/_snaps/gpt_api_calls.md |only
 gptstudio-0.2.0/gptstudio/DESCRIPTION                            |   51 -
 gptstudio-0.2.0/gptstudio/MD5                                    |  132 +++-
 gptstudio-0.2.0/gptstudio/NAMESPACE                              |   15 
 gptstudio-0.2.0/gptstudio/NEWS.md                                |only
 gptstudio-0.2.0/gptstudio/R/StreamHandler.R                      |only
 gptstudio-0.2.0/gptstudio/R/addin_chatgpt-in-source.R            |    5 
 gptstudio-0.2.0/gptstudio/R/addin_chatgpt.R                      |only
 gptstudio-0.2.0/gptstudio/R/addin_comment-code.R                 |    4 
 gptstudio-0.2.0/gptstudio/R/addin_spelling-and-grammar.R         |    4 
 gptstudio-0.2.0/gptstudio/R/bs_dropdown.R                        |only
 gptstudio-0.2.0/gptstudio/R/check_api.R                          |   29 -
 gptstudio-0.2.0/gptstudio/R/gpt_queries.R                        |  273 +++-------
 gptstudio-0.2.0/gptstudio/R/mod_app.R                            |only
 gptstudio-0.2.0/gptstudio/R/mod_chat.R                           |only
 gptstudio-0.2.0/gptstudio/R/mod_prompt.R                         |only
 gptstudio-0.2.0/gptstudio/R/openai_api_calls.R                   |  119 +++-
 gptstudio-0.2.0/gptstudio/R/run_chatgpt_app.R                    |only
 gptstudio-0.2.0/gptstudio/R/streamingMessage.R                   |only
 gptstudio-0.2.0/gptstudio/R/welcomeMessage.R                     |only
 gptstudio-0.2.0/gptstudio/R/zzz.R                                |    8 
 gptstudio-0.2.0/gptstudio/README.md                              |   17 
 gptstudio-0.2.0/gptstudio/inst/StreamHandlerApp.R                |only
 gptstudio-0.2.0/gptstudio/inst/assets                            |only
 gptstudio-0.2.0/gptstudio/inst/htmlwidgets                       |only
 gptstudio-0.2.0/gptstudio/inst/mod_app                           |only
 gptstudio-0.2.0/gptstudio/inst/mod_chat                          |only
 gptstudio-0.2.0/gptstudio/inst/mod_prompt                        |only
 gptstudio-0.2.0/gptstudio/inst/shiny-recorder                    |only
 gptstudio-0.2.0/gptstudio/inst/shiny/app.R                       |    2 
 gptstudio-0.2.0/gptstudio/inst/translations                      |only
 gptstudio-0.2.0/gptstudio/man/StreamHandler.Rd                   |only
 gptstudio-0.2.0/gptstudio/man/addin_chatgpt.Rd                   |   17 
 gptstudio-0.2.0/gptstudio/man/addin_chatgpt_in_source.Rd         |    4 
 gptstudio-0.2.0/gptstudio/man/addin_comment_code.Rd              |    4 
 gptstudio-0.2.0/gptstudio/man/addin_spelling_grammar.Rd          |    4 
 gptstudio-0.2.0/gptstudio/man/bs_dropdown.Rd                     |only
 gptstudio-0.2.0/gptstudio/man/chat_create_system_prompt.Rd       |only
 gptstudio-0.2.0/gptstudio/man/chat_history_append.Rd             |only
 gptstudio-0.2.0/gptstudio/man/chat_message_default.Rd            |only
 gptstudio-0.2.0/gptstudio/man/check_api.Rd                       |    4 
 gptstudio-0.2.0/gptstudio/man/check_api_connection.Rd            |    8 
 gptstudio-0.2.0/gptstudio/man/check_api_key.Rd                   |    8 
 gptstudio-0.2.0/gptstudio/man/create_chat_app_theme.Rd           |only
 gptstudio-0.2.0/gptstudio/man/create_ide_matching_colors.Rd      |only
 gptstudio-0.2.0/gptstudio/man/create_tmp_job_script.Rd           |only
 gptstudio-0.2.0/gptstudio/man/create_translator.Rd               |only
 gptstudio-0.2.0/gptstudio/man/get_available_endpoints.Rd         |only
 gptstudio-0.2.0/gptstudio/man/get_available_models.Rd            |only
 gptstudio-0.2.0/gptstudio/man/get_ide_theme_info.Rd              |only
 gptstudio-0.2.0/gptstudio/man/gpt_chat.Rd                        |   24 
 gptstudio-0.2.0/gptstudio/man/gpt_chat_in_source.Rd              |   12 
 gptstudio-0.2.0/gptstudio/man/gpt_create.Rd                      |   10 
 gptstudio-0.2.0/gptstudio/man/gpt_edit.Rd                        |   10 
 gptstudio-0.2.0/gptstudio/man/gptstudio-package.Rd               |    1 
 gptstudio-0.2.0/gptstudio/man/mod_app_server.Rd                  |only
 gptstudio-0.2.0/gptstudio/man/mod_app_ui.Rd                      |only
 gptstudio-0.2.0/gptstudio/man/mod_chat_server.Rd                 |only
 gptstudio-0.2.0/gptstudio/man/mod_chat_ui.Rd                     |only
 gptstudio-0.2.0/gptstudio/man/mod_prompt_server.Rd               |only
 gptstudio-0.2.0/gptstudio/man/mod_prompt_ui.Rd                   |only
 gptstudio-0.2.0/gptstudio/man/open_bg_shinyapp.Rd                |only
 gptstudio-0.2.0/gptstudio/man/query_openai_api.Rd                |only
 gptstudio-0.2.0/gptstudio/man/random_port.Rd                     |only
 gptstudio-0.2.0/gptstudio/man/request_base.Rd                    |only
 gptstudio-0.2.0/gptstudio/man/rgb_str_to_hex.Rd                  |only
 gptstudio-0.2.0/gptstudio/man/run_app_as_bg_job.Rd               |only
 gptstudio-0.2.0/gptstudio/man/run_chatgpt_app.Rd                 |only
 gptstudio-0.2.0/gptstudio/man/stream_chat_completion.Rd          |only
 gptstudio-0.2.0/gptstudio/man/streamingMessage-shiny.Rd          |only
 gptstudio-0.2.0/gptstudio/man/streamingMessage.Rd                |only
 gptstudio-0.2.0/gptstudio/man/style_chat_history.Rd              |only
 gptstudio-0.2.0/gptstudio/man/style_chat_message.Rd              |only
 gptstudio-0.2.0/gptstudio/man/text_area_input_wrapper.Rd         |only
 gptstudio-0.2.0/gptstudio/man/welcomeMessage-shiny.Rd            |only
 gptstudio-0.2.0/gptstudio/man/welcomeMessage.Rd                  |only
 gptstudio-0.2.0/gptstudio/tests/testthat/_snaps/gpt_queries.md   |   30 -
 gptstudio-0.2.0/gptstudio/tests/testthat/test-addin-chatgpt.R    |only
 gptstudio-0.2.0/gptstudio/tests/testthat/test-addins.R           |    1 
 gptstudio-0.2.0/gptstudio/tests/testthat/test-bs_dropdown.R      |only
 gptstudio-0.2.0/gptstudio/tests/testthat/test-check_api.R        |    2 
 gptstudio-0.2.0/gptstudio/tests/testthat/test-gpt_api_calls.R    |   17 
 gptstudio-0.2.0/gptstudio/tests/testthat/test-gpt_queries.R      |   21 
 gptstudio-0.2.0/gptstudio/tests/testthat/test-mod_app.R          |only
 gptstudio-0.2.0/gptstudio/tests/testthat/test-mod_chat.R         |only
 gptstudio-0.2.0/gptstudio/tests/testthat/test-mod_prompt.R       |only
 gptstudio-0.2.0/gptstudio/tests/testthat/test-shiny_apps.R       |   18 
 90 files changed, 512 insertions(+), 342 deletions(-)

More information about gptstudio at CRAN
Permanent link

Package RcppCGAL updated to version 5.5.2 with previous version 5.4.1 dated 2022-03-21

Title: Rcpp Integration for CGAL
Description: Creates a header only package to link to the CGAL (Computational Geometry Algorithms Library) header files in Rcpp. There are a variety of potential uses for the software such as Hilbert sorting, KDtree nearest neighbors, and convex hull algorithms. There is only one R function in this package, which returns the current version of the CGAL library included. For more information about how to use the header files, see the CGAL documentation at <https://www.cgal.org>. Currently includes the CGAL 5.5.2 stable release.
Author: Eric Dunipace [aut, cre]
Maintainer: Eric Dunipace <edunipace@mail.harvard.edu>

Diff between RcppCGAL versions 5.4.1 dated 2022-03-21 and 5.5.2 dated 2023-05-29

 RcppCGAL-5.4.1/RcppCGAL/inst/VERSION                 |only
 RcppCGAL-5.5.2/RcppCGAL/DESCRIPTION                  |   17 -
 RcppCGAL-5.5.2/RcppCGAL/MD5                          |   36 ++-
 RcppCGAL-5.5.2/RcppCGAL/NAMESPACE                    |    2 
 RcppCGAL-5.5.2/RcppCGAL/R/RcppCGAL-package.R         |   13 +
 RcppCGAL-5.5.2/RcppCGAL/R/cgal_check.R               |only
 RcppCGAL-5.5.2/RcppCGAL/R/cgal_version.R             |   32 ++-
 RcppCGAL-5.5.2/RcppCGAL/R/cleaner.R                  |only
 RcppCGAL-5.5.2/RcppCGAL/R/downloader.R               |  198 +++++++++----------
 RcppCGAL-5.5.2/RcppCGAL/R/zzz.R                      |   33 ++-
 RcppCGAL-5.5.2/RcppCGAL/README.md                    |   19 -
 RcppCGAL-5.5.2/RcppCGAL/build                        |only
 RcppCGAL-5.5.2/RcppCGAL/inst/CITATION                |   21 --
 RcppCGAL-5.5.2/RcppCGAL/inst/NEWS.md                 |   14 +
 RcppCGAL-5.5.2/RcppCGAL/inst/doc                     |only
 RcppCGAL-5.5.2/RcppCGAL/man/RcppCGAL-package.Rd      |    4 
 RcppCGAL-5.5.2/RcppCGAL/man/cgal_install.Rd          |only
 RcppCGAL-5.5.2/RcppCGAL/man/cgal_is_installed.Rd     |only
 RcppCGAL-5.5.2/RcppCGAL/man/dot-cgal.cerr.remover.Rd |    2 
 RcppCGAL-5.5.2/RcppCGAL/man/dot-cgal.downloader.Rd   |    4 
 RcppCGAL-5.5.2/RcppCGAL/man/dot-cgal_url.Rd          |only
 RcppCGAL-5.5.2/RcppCGAL/man/dot-save_cgal_version.Rd |only
 RcppCGAL-5.5.2/RcppCGAL/vignettes                    |only
 23 files changed, 247 insertions(+), 148 deletions(-)

More information about RcppCGAL at CRAN
Permanent link

Package ftExtra updated to version 0.6.0 with previous version 0.5.0 dated 2023-01-20

Title: Extensions for 'Flextable'
Description: Build display tables easily by extending the functionality of the 'flextable' package. Features include spanning header, grouping rows, parsing markdown and so on.
Author: Atsushi Yasumoto [aut, cph, cre] , David Gohel [ctb], Romain Francois [ctb] , Tatsuya Shima [ctb]
Maintainer: Atsushi Yasumoto <atusy.rpkg@gmail.com>

Diff between ftExtra versions 0.5.0 dated 2023-01-20 and 0.6.0 dated 2023-05-29

 DESCRIPTION                     |   17 
 MD5                             |   34 -
 NEWS.md                         |    8 
 R/as-paragraph-md.R             |   54 -
 R/colformat.R                   |    1 
 R/footnote.R                    |  122 +++
 R/header-transform.R            |    2 
 R/md2df.R                       |   25 
 build/vignette.rds              |binary
 inst/doc/format_columns.R       |   48 +
 inst/doc/format_columns.Rmd     |   63 +
 inst/doc/format_columns.html    | 1348 +++++++++-------------------------------
 inst/doc/group-rows.html        |  527 +++------------
 inst/doc/transform-headers.html |  346 ++--------
 man/as_flextable_methods.Rd     |    8 
 man/footnote_options.Rd         |   63 +
 tests/testthat/_snaps           |only
 tests/testthat/test-footnote.R  |only
 vignettes/format_columns.Rmd    |   63 +
 19 files changed, 938 insertions(+), 1791 deletions(-)

More information about ftExtra at CRAN
Permanent link

Package macroBiome updated to version 0.3.0 with previous version 0.2.0 dated 2023-02-12

Title: A Tool for Mapping the Distribution of the Biomes and Bioclimate
Description: Procedures for simulating biomes by equilibrium vegetation models, with a special focus on paleoenvironmental applications. Three widely used equilibrium biome models are currently implemented in the package: the Holdridge Life Zone (HLZ) system (Holdridge 1947, <doi:10.1126/science.105.2727.367>), the Köppen-Geiger classification (KGC) system (Köppen 1936, <https://koeppen-geiger.vu-wien.ac.at/pdf/Koppen_1936.pdf>) and the BIOME model (Prentice et al. 1992, <doi:10.2307/2845499>). Three climatic forest-steppe models are also implemented. An approach for estimating monthly time series of relative sunshine duration from temperature and precipitation data (Yin 1999, <doi:10.1007/s007040050111>) is also adapted, allowing process-based biome models to be combined with high-resolution paleoclimate simulation datasets (e.g., CHELSA-TraCE21k v1.0 dataset: <https://chelsa-climate.org/chelsa-trace21k/>).
Author: Zoltan Szelepcsenyi [aut, cre, cph]
Maintainer: Zoltan Szelepcsenyi <szelepcsenyi.zoltan@gmail.com>

Diff between macroBiome versions 0.2.0 dated 2023-02-12 and 0.3.0 dated 2023-05-29

 DESCRIPTION                      |   12 ++++++------
 MD5                              |   28 ++++++++++++++--------------
 NAMESPACE                        |    2 +-
 NEWS.md                          |    9 +++++++++
 R/calcDlySolRad.R                |    4 +---
 R/cliBrtSunDurFrc.R              |    7 ++++---
 R/sysdata.rda                    |binary
 README.md                        |   12 ++++++------
 build/partial.rdb                |binary
 data/inp_exClnrGrid.rda          |binary
 data/inp_exPoints.rda            |binary
 data/inp_exSglyGrid.rda          |binary
 data/vegClsNumCodes.rda          |binary
 man/cliBrtSunDurFrcPoints.Rd     |    2 +-
 man/figures/README-example-1.png |binary
 15 files changed, 42 insertions(+), 34 deletions(-)

More information about macroBiome at CRAN
Permanent link

Package criticality updated to version 0.9.3 with previous version 0.9.2 dated 2022-04-20

Title: Modeling Fissile Material Operations in Nuclear Facilities
Description: A collection of functions for modeling fissile material operations in nuclear facilities, based on Zywiec et al (2021) <doi:10.1016/j.ress.2020.107322>.
Author: William Zywiec [aut, cre]
Maintainer: William Zywiec <willzywiec@gmail.com>

Diff between criticality versions 0.9.2 dated 2022-04-20 and 0.9.3 dated 2023-05-29

 DESCRIPTION     |   20 +++----
 MD5             |   26 ++++-----
 R/bn.R          |   15 ++---
 R/nn.R          |  149 ++++++++++++++++++++++++++++++++------------------------
 R/risk.R        |   72 +++++++++++++--------------
 R/sample.R      |   42 ++++++++++-----
 R/scale.R       |   31 +++++------
 R/tabulate.R    |  114 +++++++++---------------------------------
 R/test.R        |  127 ++++++++++++++++++++++++-----------------------
 man/BN.Rd       |    1 
 man/NN.Rd       |   12 +---
 man/Risk.Rd     |   23 +++-----
 man/Tabulate.Rd |    3 -
 man/Test.Rd     |   11 ----
 14 files changed, 301 insertions(+), 345 deletions(-)

More information about criticality at CRAN
Permanent link

New package zonohedra with initial version 0.2-1
Package: zonohedra
Version: 0.2-1
Date: 2023-05-27
Title: Compute and Plot Zonohedra from Vector Generators
Depends: R (>= 4.0.0)
Imports: logger
Suggests: rgl, orientlib, microbenchmark, arrangements, knitr, rmarkdown, gifski
Description: Computes a zonohedron from real vector generators. The package also computes zonogons (2D zonotopes) and zonosegs (1D zonotopes). An elementary S3 class for matroids is included, which supports matroids with rank 3, 2, and 1. Optimization methods are taken from Heckbert (1985) <https://www.cs.cmu.edu/~ph/zono.ps.gz>.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
NeedsCompilation: yes
Biarch: no
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Repository: CRAN
VignetteBuilder: knitr
BuildVignettes: yes
ByteCompile: no
Packaged: 2023-05-27 16:41:32 UTC; Glenn
Date/Publication: 2023-05-29 19:10:02 UTC

More information about zonohedra at CRAN
Permanent link

New package ScatterDensity with initial version 0.0.1
Package: ScatterDensity
Title: Density Estimation and Visualization of 2D Scatter Plots
Version: 0.0.1
Date: 2023-05-28
Maintainer: Michael Thrun <m.thrun@gmx.net>
Description: The user has the option to utilize the two-dimensional density estimation techniques called smoothed density published by Eilers and Goeman (2004) <doi:10.1093/bioinformatics/btg454>, and pareto density which was evaluated for univariate data by Thrun, Gehlert and Ultsch, 2020 <doi:10.1371/journal.pone.0238835>. Moreover, it provides visualizations of the density estimation in the form of two-dimensional scatter plots in which the points are color-coded based on increasing density. Colors are defined by the one-dimensional clustering technique called 1D distribution cluster algorithm (DDCAL) published by Lux and Rinderle-Ma (2023) <doi:10.1007/s00357-022-09428-6>.
LazyLoad: yes
Imports: Rcpp, pracma
Suggests: DataVisualizations, ggplot2, ggExtra, plotly, FCPS, parallelDist, secr, ClusterR
Depends: methods, R (>= 2.10)
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
License: GPL-3
Encoding: UTF-8
URL: https://www.deepbionics.org/
BugReports: https://github.com/Mthrun/ScatterDensity/issues
Packaged: 2023-05-28 09:12:38 UTC; MCT
Author: Michael Thrun [aut, cre, cph] , Felix Pape [aut, rev], Luca Brinkman [aut]
Repository: CRAN
Date/Publication: 2023-05-29 19:10:07 UTC

More information about ScatterDensity at CRAN
Permanent link

New package matrixset with initial version 0.1.1
Package: matrixset
Title: Creating and Manipulating Matrix Ensemble
Version: 0.1.1
Description: Creates an object that stores a matrix ensemble, matrices that share the same common properties, where rows and columns can be annotated. Matrices must have the same dimension and dimnames. Operators to manipulate these objects are provided as well as mechanisms to apply functions to these objects.
Imports: cli, crayon, dplyr, methods, pillar, purrr, R6, Rcpp, rlang, stringr, tibble, tidyr, tidyselect, vctrs
License: MIT + file LICENSE
URL: https://github.com/pascalcroteau/matrixset
BugReports: https://github.com/pascalcroteau/matrixset/issues
Encoding: UTF-8
LazyData: true
Suggests: MASS, ggfortify, knitr, lme4, magrittr, patchwork, rmarkdown, testthat (>= 3.0.0), tidyverse
Depends: R (>= 4.0)
VignetteBuilder: knitr
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2023-05-28 15:06:55 UTC; pc
Author: Pascal Croteau [aut, cre, cph]
Maintainer: Pascal Croteau <croteaupascl@gmail.com>
Repository: CRAN
Date/Publication: 2023-05-29 19:30:02 UTC

More information about matrixset at CRAN
Permanent link

New package EEAaq with initial version 0.0.1
Package: EEAaq
Title: Handle Air Quality Data from the European Environmental Agency Data Portal
Version: 0.0.1
Description: This software downloads and manages air quality data at the European level from the European Environmental Agency (EEA) dataflows (<https://www.eea.europa.eu/data-and-maps/data/aqereporting-9>). The package allows dynamically mapping the stations, summarising and time aggregating the measurements and building spatial interpolation maps. See the webpage <https://www.eea.europa.eu/en> for further information on EEA's activities and history.
Imports: sf,readr,gstat,grDevices,leaflet,tictoc,sp, raster,mondate,aweek,ggspatial,htmlwidgets, dplyr,ggplot2,lubridate,stringr,tibble,tidyr
Suggests: purrr,ggpubr,gifski
Encoding: UTF-8
Depends: R (>= 2.10)
LazyData: true
License: GPL (>= 3)
NeedsCompilation: no
Packaged: 2023-05-27 14:52:28 UTC; Agostino
Author: Agostino Tassan Mazzocco [aut, cre, cph], Paolo Maranzano [aut, cph] , Riccardo Borgoni [aut, cph]
Maintainer: Agostino Tassan Mazzocco <agostino.tassan@gmail.com>
Repository: CRAN
Date/Publication: 2023-05-29 19:00:02 UTC

More information about EEAaq at CRAN
Permanent link

Package escalation updated to version 0.1.5 with previous version 0.1.4 dated 2020-10-18

Title: Modular Approach to Dose Finding Clinical Trials
Description: Methods for working with dose-finding clinical trials. We provide implementations of many dose-finding clinical trial designs, including the continual reassessment method (CRM) by O'Quigley et al. (1990) <doi:10.2307/2531628>, the toxicity probability interval (TPI) design by Ji et al. (2007) <doi:10.1177/1740774507079442>, the modified TPI (mTPI) design by Ji et al. (2010) <doi:10.1177/1740774510382799>, the Bayesian optimal interval design (BOIN) by Liu & Yuan (2015) <doi:10.1111/rssc.12089>, EffTox by Thall & Cook (2004) <doi:10.1111/j.0006-341X.2004.00218.x>; the design of Wages & Tait (2015) <doi:10.1080/10543406.2014.920873>, and the 3+3 described by Korn et al. (1994) <doi:10.1002/sim.4780131802>. All designs are implemented with a common interface. We also offer optional additional classes to tailor the behaviour of all designs, including avoiding skipping doses, stopping after n patients have been treated at the recommended [...truncated...]
Author: Kristian Brock [aut, cre] , Daniel Slade [ctb]
Maintainer: Kristian Brock <kristian.brock@gmail.com>

Diff between escalation versions 0.1.4 dated 2020-10-18 and 0.1.5 dated 2023-05-29

 DESCRIPTION                      |   25 
 MD5                              |   39 -
 NAMESPACE                        |   18 
 NEWS.md                          |    5 
 R/boin_selector.R                |   18 
 R/mtpi2_selector.R               |only
 R/mtpi_selector.R                |   40 +
 R/stop_when_too_toxic.R          |   45 -
 README.md                        |  228 ++++----
 inst/doc/A100-DoseSelectors.html |  474 +++++++---------
 inst/doc/A205-CRM.html           |  946 ++++++++++++++++++---------------
 inst/doc/A207-NBG.html           |  572 ++++++++++----------
 inst/doc/A210-TPI.html           |  576 +++++++++++---------
 inst/doc/A220-mTPI.html          |  605 +++++++++++----------
 inst/doc/A230-BOIN.html          |  434 ++++++++-------
 inst/doc/A600-DosePaths.html     |  999 ++++++++++++++++++++---------------
 inst/doc/A700-Simulation.html    | 1095 +++++++++++++++++++++------------------
 man/get_mtpi.Rd                  |    7 
 man/get_mtpi2.Rd                 |only
 man/stop_when_too_toxic.Rd       |   24 
 tests/testthat/test_boin.R       |   50 +
 tests/testthat/test_mtpi2.R      |only
 22 files changed, 3413 insertions(+), 2787 deletions(-)

More information about escalation at CRAN
Permanent link

Package SHAPforxgboost updated to version 0.1.3 with previous version 0.1.1 dated 2021-03-27

Title: SHAP Plots for 'XGBoost'
Description: Aid in visual data investigations using SHAP (SHapley Additive exPlanation) visualization plots for 'XGBoost' and 'LightGBM'. It provides summary plot, dependence plot, interaction plot, and force plot and relies on the SHAP implementation provided by 'XGBoost' and 'LightGBM'. Please refer to 'slundberg/shap' for the original implementation of SHAP in 'Python'.
Author: Yang Liu [aut, cre] , Allan Just [aut, ctb] , Michael Mayer [ctb]
Maintainer: Yang Liu <lyhello@gmail.com>

Diff between SHAPforxgboost versions 0.1.1 dated 2021-03-27 and 0.1.3 dated 2023-05-29

 DESCRIPTION                          |   10 
 LICENSE                              |    4 
 MD5                                  |   57 ++---
 NEWS.md                              |    4 
 R/SHAP_funcs.R                       |   51 +++-
 R/example/example_categorical.R      |    2 
 R/example/example_dependence_plot.R  |    2 
 R/example/example_fit_summary.R      |    2 
 R/example/example_interaction_plot.R |    4 
 README.md                            |   57 +++--
 build/partial.rdb                    |binary
 build/vignette.rds                   |binary
 inst/doc/basic_workflow.R            |    3 
 inst/doc/basic_workflow.Rmd          |    3 
 inst/doc/basic_workflow.html         |  397 ++++++++++++++++++++++++++++-------
 man/figures                          |only
 man/label.feature.Rd                 |   40 +--
 man/labels_within_package.Rd         |   86 +++----
 man/scatter.plot.diagonal.Rd         |  104 ++++-----
 man/scatter.plot.simple.Rd           |   96 ++++----
 man/shap.plot.dependence.Rd          |    2 
 man/shap.plot.force_plot.Rd          |   94 ++++----
 man/shap.plot.force_plot_bygroup.Rd  |   60 ++---
 man/shap.plot.summary.Rd             |   18 +
 man/shap.plot.summary.wrap1.Rd       |    2 
 man/shap.plot.summary.wrap2.Rd       |    2 
 man/shap.prep.Rd                     |    4 
 man/shap.prep.interaction.Rd         |    4 
 man/shap.values.Rd                   |   20 -
 vignettes/basic_workflow.Rmd         |    3 
 30 files changed, 726 insertions(+), 405 deletions(-)

More information about SHAPforxgboost at CRAN
Permanent link

New package nlpsem with initial version 0.1.0
Package: nlpsem
Title: Linear and Nonlinear Longitudinal Process in Structural Equation Modeling Framework
Version: 0.1.0
Description: Provides computational resources for nonlinear longitudinal models, specifically those that are intrinsically nonlinear, in four distinct contexts: (1) univariate longitudinal processes represented by latent variables, with an option of incorporating covariates such as time-invariant covariates (TICs) and time-varying covariates (TVCs); (2) multivariate longitudinal sequences that facilitate the assessment of correlations or causative relationships between longitudinal variables; (3) multiple-group structures for models found in scenarios (1) and (2), allowing for the exploration of disparities among manifested classes; and (4) mixture models for scenarios (1) and (2), premised on the assumption that trajectories are from multiple latent classes. The methods implemented are based on Peugh & Fan (2015) <doi:10.1080/10705511.2014.919823>, Lubke & Muthén (2007) <doi:10.1080/10705510709336735>, Casella & Berger (2002, ISBN: 9780534243128), Madansky (1965) <https: [...truncated...]
License: GPL (>= 3.0)
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.0.0)
Imports: OpenMx, ggplot2, dplyr, tidyr, stringr, Matrix, nnet, readr
URL: https://github.com/Veronica0206/nlpsem
BugReports: https://github.com/Veronica0206/nlpsem/issues
NeedsCompilation: no
Packaged: 2023-05-25 03:24:57 UTC; jinliu
Author: Jin Liu [aut, cre]
Maintainer: Jin Liu <Veronica.Liu0206@gmail.com>
Repository: CRAN
Date/Publication: 2023-05-29 17:20:02 UTC

More information about nlpsem at CRAN
Permanent link

New package MVPBT with initial version 1.1-1
Package: MVPBT
Title: Publication Bias Tests for Meta-Analysis of Diagnostic Accuracy Test
Version: 1.1-1
Date: 2023-05-26
Maintainer: Hisashi Noma <noma@ism.ac.jp>
Description: Generalized Egger tests for detecting publication bias in meta-analysis for diagnostic accuracy test (Noma (2020) <doi:10.1111/biom.13343>, Noma (2022) <doi:10.48550/arXiv.2209.07270>). These publication bias tests are generally more powerful compared with the conventional univariate publication bias tests and can incorporate correlation information between the outcome variables.
Imports: stats, MASS, metafor, mada, mvmeta
License: GPL-3
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2023-05-26 01:30:04 UTC; Hisashi
Author: Hisashi Noma [aut, cre]
Repository: CRAN
Date/Publication: 2023-05-29 17:30:07 UTC

More information about MVPBT at CRAN
Permanent link

Package meteoland updated to version 2.0.1 with previous version 2.0.0 dated 2023-02-17

Title: Landscape Meteorology Tools
Description: Functions to estimate weather variables at any position of a landscape [De Caceres et al. (2018) <doi:10.1016/j.envsoft.2018.08.003>].
Author: Miquel De Caceres [aut, cre] , Victor Granda [aut] , Nicolas Martin [aut] , Antoine Cabon [aut]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>

Diff between meteoland versions 2.0.0 dated 2023-02-17 and 2.0.1 dated 2023-05-29

 meteoland-2.0.0/meteoland/R/TODO.R                                                           |only
 meteoland-2.0.0/meteoland/data/examplecorrectiondata.rda                                     |only
 meteoland-2.0.0/meteoland/data/examplegridtopography.rda                                     |only
 meteoland-2.0.0/meteoland/data/exampleinterpolationdata.rda                                  |only
 meteoland-2.0.0/meteoland/inst/doc/UserGuide.R                                               |only
 meteoland-2.0.0/meteoland/inst/doc/UserGuide.Rmd                                             |only
 meteoland-2.0.0/meteoland/inst/doc/UserGuide.html                                            |only
 meteoland-2.0.0/meteoland/man/examplecorrectiondata.Rd                                       |only
 meteoland-2.0.0/meteoland/man/examplegridtopography.Rd                                       |only
 meteoland-2.0.0/meteoland/man/exampleinterpolationdata.Rd                                    |only
 meteoland-2.0.0/meteoland/man/spplot-SpatialGridMeteorology-method.Rd                        |only
 meteoland-2.0.0/meteoland/tests/testthat/test-81_results_integrity_reshape_framework.R       |only
 meteoland-2.0.0/meteoland/tests/testthat/test-82_results_integrity_interpolation_framework.R |only
 meteoland-2.0.0/meteoland/vignettes/UserGuide.Rmd                                            |only
 meteoland-2.0.1/meteoland/DESCRIPTION                                                        |   20 
 meteoland-2.0.1/meteoland/MD5                                                                |  208 -
 meteoland-2.0.1/meteoland/NAMESPACE                                                          |   35 
 meteoland-2.0.1/meteoland/NEWS.md                                                            |    6 
 meteoland-2.0.1/meteoland/R/DefineProcedureClasses.R                                         |  304 -
 meteoland-2.0.1/meteoland/R/DefineSpatialDataClasses.R                                       |  176 -
 meteoland-2.0.1/meteoland/R/MeteorologyInterpolationData.R                                   |  308 -
 meteoland-2.0.1/meteoland/R/MeteorologyUncorrectedData.R                                     |   42 
 meteoland-2.0.1/meteoland/R/NetCDFutils.R                                                    |   56 
 meteoland-2.0.1/meteoland/R/RcppExports.R                                                    |   22 
 meteoland-2.0.1/meteoland/R/SpatialGridMeteorology-methods.R                                 |  374 +-
 meteoland-2.0.1/meteoland/R/SpatialGridTopography-methods.R                                  |  316 -
 meteoland-2.0.1/meteoland/R/SpatialPixelsMeteorology-methods.R                               |  310 -
 meteoland-2.0.1/meteoland/R/SpatialPixelsTopography-methods.R                                |  305 -
 meteoland-2.0.1/meteoland/R/SpatialPointsMeteorology-methods.R                               |  282 -
 meteoland-2.0.1/meteoland/R/SpatialPointsTopography-methods.R                                |  271 -
 meteoland-2.0.1/meteoland/R/averagearea.R                                                    |   87 
 meteoland-2.0.1/meteoland/R/bias_correction_internals.R                                      |  582 +--
 meteoland-2.0.1/meteoland/R/correctionpoints.R                                               |  479 +-
 meteoland-2.0.1/meteoland/R/correctionpoints.errors.R                                        |  556 +--
 meteoland-2.0.1/meteoland/R/data.R                                                           |   67 
 meteoland-2.0.1/meteoland/R/defaultCorrectionParams.R                                        |   30 
 meteoland-2.0.1/meteoland/R/defaultGenerationParams.R                                        |   24 
 meteoland-2.0.1/meteoland/R/download_currentday.R                                            |  236 -
 meteoland-2.0.1/meteoland/R/download_historical.R                                            |   72 
 meteoland-2.0.1/meteoland/R/download_stationlist.R                                           |   82 
 meteoland-2.0.1/meteoland/R/extractNetCDF.R                                                  |  424 +-
 meteoland-2.0.1/meteoland/R/extractSpatialData.R                                             |   20 
 meteoland-2.0.1/meteoland/R/extractdates.R                                                   |  272 -
 meteoland-2.0.1/meteoland/R/extractgridpoints.R                                              |  184 -
 meteoland-2.0.1/meteoland/R/interpolation.calibration.R                                      |  584 +--
 meteoland-2.0.1/meteoland/R/interpolation.coverage.R                                         |   73 
 meteoland-2.0.1/meteoland/R/interpolation.cv.R                                               |  556 +--
 meteoland-2.0.1/meteoland/R/interpolationgrid.R                                              |  382 +-
 meteoland-2.0.1/meteoland/R/interpolationpixels.R                                            |  382 +-
 meteoland-2.0.1/meteoland/R/interpolationpoints.R                                            |  527 +--
 meteoland-2.0.1/meteoland/R/mergegrids.R                                                     |  248 -
 meteoland-2.0.1/meteoland/R/meteocomplete.R                                                  |  182 -
 meteoland-2.0.1/meteoland/R/meteoland-package.R                                              |   13 
 meteoland-2.0.1/meteoland/R/meteoplot.R                                                      |  176 -
 meteoland-2.0.1/meteoland/R/ncdf_internals.R                                                 | 1670 +++++-----
 meteoland-2.0.1/meteoland/R/plot.interpolation.cv.R                                          |  182 -
 meteoland-2.0.1/meteoland/R/precipitationconcentration.R                                     |  124 
 meteoland-2.0.1/meteoland/R/readWindNinjaOutput.R                                            |   84 
 meteoland-2.0.1/meteoland/R/readmeteorologygrid.R                                            |  168 -
 meteoland-2.0.1/meteoland/R/readmeteorologypoints.R                                          |  190 -
 meteoland-2.0.1/meteoland/R/reshapemeteospain.R                                              |  330 -
 meteoland-2.0.1/meteoland/R/reshapeweathercan.R                                              |  310 -
 meteoland-2.0.1/meteoland/R/reshapeworldmet.R                                                |  232 -
 meteoland-2.0.1/meteoland/R/summary.interpolation.cv.R                                       |  228 -
 meteoland-2.0.1/meteoland/R/summarygridpixels.R                                              |  194 -
 meteoland-2.0.1/meteoland/R/summaryinterpolationdata.R                                       |   98 
 meteoland-2.0.1/meteoland/R/summarypoints.R                                                  |  270 -
 meteoland-2.0.1/meteoland/R/weathergeneration.R                                              |  660 +--
 meteoland-2.0.1/meteoland/R/writemeteorologygrid.R                                           |  100 
 meteoland-2.0.1/meteoland/R/writemeteorologypoints.R                                         |  148 
 meteoland-2.0.1/meteoland/build/partial.rdb                                                  |binary
 meteoland-2.0.1/meteoland/build/vignette.rds                                                 |binary
 meteoland-2.0.1/meteoland/inst/doc/reshaping-meteo.html                                      |  161 
 meteoland-2.0.1/meteoland/inst/doc/tidy-meteoland.html                                       |  307 -
 meteoland-2.0.1/meteoland/man/MeteorologyInterpolationData.Rd                                |    4 
 meteoland-2.0.1/meteoland/man/MeteorologyUncorrectedData-class.Rd                            |    2 
 meteoland-2.0.1/meteoland/man/MeteorologyUncorrectedData.Rd                                  |    4 
 meteoland-2.0.1/meteoland/man/SpatialGridMeteorology-class.Rd                                |    7 
 meteoland-2.0.1/meteoland/man/SpatialGridMeteorology.Rd                                      |    4 
 meteoland-2.0.1/meteoland/man/SpatialGridTopography-class.Rd                                 |    7 
 meteoland-2.0.1/meteoland/man/SpatialGridTopography.Rd                                       |   20 
 meteoland-2.0.1/meteoland/man/SpatialPixelsMeteorology-class.Rd                              |    7 
 meteoland-2.0.1/meteoland/man/SpatialPixelsMeteorology.Rd                                    |   10 
 meteoland-2.0.1/meteoland/man/SpatialPixelsTopography-class.Rd                               |    6 
 meteoland-2.0.1/meteoland/man/SpatialPixelsTopography.Rd                                     |   33 
 meteoland-2.0.1/meteoland/man/SpatialPointsMeteorology-class.Rd                              |    9 
 meteoland-2.0.1/meteoland/man/SpatialPointsMeteorology.Rd                                    |    2 
 meteoland-2.0.1/meteoland/man/SpatialPointsTopography-class.Rd                               |   10 
 meteoland-2.0.1/meteoland/man/SpatialPointsTopography.Rd                                     |   25 
 meteoland-2.0.1/meteoland/man/averagearea.Rd                                                 |   21 
 meteoland-2.0.1/meteoland/man/correctionpoints.Rd                                            |   61 
 meteoland-2.0.1/meteoland/man/downloadAEMETcurrentday.Rd                                     |    6 
 meteoland-2.0.1/meteoland/man/downloadMETEOCLIMATICcurrentday.Rd                             |    4 
 meteoland-2.0.1/meteoland/man/downloadMGcurrentday.Rd                                        |    4 
 meteoland-2.0.1/meteoland/man/downloadSMCcurrentday.Rd                                       |    4 
 meteoland-2.0.1/meteoland/man/extractNetCDF.Rd                                               |    2 
 meteoland-2.0.1/meteoland/man/extractdates.Rd                                                |   10 
 meteoland-2.0.1/meteoland/man/interpolation.coverage.Rd                                      |   11 
 meteoland-2.0.1/meteoland/man/interpolation.cv.Rd                                            |   34 
 meteoland-2.0.1/meteoland/man/interpolation_temperature.Rd                                   |   22 
 meteoland-2.0.1/meteoland/man/interpolationpoints.Rd                                         |   49 
 meteoland-2.0.1/meteoland/man/meteoplot.Rd                                                   |   26 
 meteoland-2.0.1/meteoland/man/readNetCDFpoints.Rd                                            |    6 
 meteoland-2.0.1/meteoland/man/readWindNinjaWindFields.Rd                                     |    6 
 meteoland-2.0.1/meteoland/man/readmeteorologypoint.Rd                                        |    6 
 meteoland-2.0.1/meteoland/man/subsample.Rd                                                   |   19 
 meteoland-2.0.1/meteoland/man/summarypoints.Rd                                               |   25 
 meteoland-2.0.1/meteoland/man/weathergeneration.Rd                                           |   24 
 meteoland-2.0.1/meteoland/man/writemeteorologygrid.Rd                                        |    4 
 meteoland-2.0.1/meteoland/src/temperature.cpp                                                |   22 
 meteoland-2.0.1/meteoland/tests/testthat/test-02_meteo_and_topo.R                            |    1 
 meteoland-2.0.1/meteoland/tests/testthat/test-04_interpolation_framework.R                   |    2 
 112 files changed, 7245 insertions(+), 8003 deletions(-)

More information about meteoland at CRAN
Permanent link

New package EntropicStatistics with initial version 0.1.0
Package: EntropicStatistics
Title: Functions Based on Entropic Statistics
Version: 0.1.0
Maintainer: Jialin Zhang (JZ) <jzhang@math.msstate.edu>
Description: Contains methods for data analysis in entropic perspective. These entropic perspective methods are nonparametric, and perform better on non-ordinal data. Currently, the package has a function HeatMap() for visualizing distributional characteristics among multiple populations (groups).
License: GPL-3
Encoding: UTF-8
Imports: ggplot2, ggrepel, hrbrthemes, tidyverse, dplyr, tidyr, tibble
NeedsCompilation: no
Suggests: testthat (>= 3.0.0)
Packaged: 2023-05-26 19:09:31 UTC; jz505
Author: Jialin Zhang [aut, cph, cre]
Repository: CRAN
Date/Publication: 2023-05-29 17:40:02 UTC

More information about EntropicStatistics at CRAN
Permanent link

Package tidyREDCap updated to version 1.1.1 with previous version 1.1.0 dated 2023-02-18

Title: Helper Functions for Working with 'REDCap' Data
Description: Helper functions for processing 'REDCap' data in R. 'REDCap' is a web-enabled application for building and managing surveys and databases developed at Vanderbilt University.
Author: Raymond Balise [aut, cre] , Gabriel Odom [aut] , Anna Calderon [aut] , Layla Bouzoubaa [aut] , Wayne DeFreitas [aut] , Lauren Nahodyl [ctb] , Kyle Grealis [aut]
Maintainer: Raymond Balise <balise@miami.edu>

Diff between tidyREDCap versions 1.1.0 dated 2023-02-18 and 1.1.1 dated 2023-05-29

 DESCRIPTION                                 |   18 +-
 MD5                                         |   30 ++-
 NAMESPACE                                   |   27 +++
 NEWS.md                                     |   15 +
 R/labels.R                                  |only
 R/make_choose_all_table.R                   |   58 +++++-
 R/make_yes_no.R                             |only
 R/make_yes_no_unknown.R                     |only
 README.md                                   |    9 +
 inst/doc/dropLabels.html                    |  245 ++++++++++++++++++++++++++--
 inst/doc/makeChooseAllTable.R               |    9 +
 inst/doc/makeChooseAllTable.Rmd             |   18 ++
 inst/doc/makeChooseAllTable.html            |   24 ++
 man/make_choose_all_table.Rd                |    8 
 man/make_yes_no.Rd                          |only
 man/make_yes_no_unknown.Rd                  |only
 tests/testthat/test-make_choose_all_table.R |only
 tests/testthat/test-make_yes_no.R           |only
 tests/testthat/test-make_yes_no_unknown.R   |only
 vignettes/makeChooseAllTable.Rmd            |   18 ++
 20 files changed, 442 insertions(+), 37 deletions(-)

More information about tidyREDCap at CRAN
Permanent link

Package kim updated to version 0.5.260 with previous version 0.5.212 dated 2023-03-12

Title: A Toolkit for Behavioral Scientists
Description: A collection of functions for analyzing data typically collected or used by behavioral scientists. Examples of the functions include a function that compares groups in a factorial experimental design, a function that conducts two-way analysis of variance (ANOVA), and a function that cleans a data set generated by Qualtrics surveys. Some of the functions will require installing additional package(s). Such packages and other references are cited within the section describing the relevant functions. Many functions in this package rely heavily on these two popular R packages: Dowle et al. (2021) <https://CRAN.R-project.org/package=data.table>. Wickham et al. (2021) <https://CRAN.R-project.org/package=ggplot2>.
Author: Jin Kim [aut, cre]
Maintainer: Jin Kim <jin.m.kim@yale.edu>

Diff between kim versions 0.5.212 dated 2023-03-12 and 0.5.260 dated 2023-05-29

 DESCRIPTION                      |    6 -
 MD5                              |   58 ++++++---
 NAMESPACE                        |   10 +
 NEWS.md                          |   33 +++++
 R/binomial_test.R                |only
 R/chi_squared_test.R             |   19 ++-
 R/cohen_d.R                      |   20 ++-
 R/cohen_d_for_one_sample.R       |only
 R/cohen_d_over_n.R               |   12 +-
 R/correlation_kim.R              |only
 R/lenu.R                         |only
 R/levene_test.R                  |only
 R/merge_data_table_list.R        |   14 +-
 R/merge_data_tables.R            |  230 ++++++++++++++++++++++++++++++++-------
 R/package_list_default.R         |only
 R/scatterplot.R                  |   49 +++++++-
 R/se_of_percentage.R             |only
 R/se_of_proportion.R             |only
 R/tau_squared.R                  |   14 ++
 R/two_way_anova.R                |  144 +++++++++++++++++++++---
 R/var_of_percentage.R            |only
 R/var_of_proportion.R            |only
 R/weighted_mean_effect_size.R    |   38 ++++++
 man/binomial_test.Rd             |only
 man/chi_squared_test.Rd          |    6 -
 man/cohen_d_for_one_sample.Rd    |only
 man/correlation_kim.Rd           |only
 man/lenu.Rd                      |only
 man/levene_test.Rd               |only
 man/merge_data_table_list.Rd     |   12 +-
 man/merge_data_tables.Rd         |   50 +++++++-
 man/package_list_default.Rd      |only
 man/scatterplot.Rd               |   33 +++++
 man/se_of_percentage.Rd          |only
 man/se_of_proportion.Rd          |only
 man/tau_squared.Rd               |    9 +
 man/two_way_anova.Rd             |   43 ++++++-
 man/var_of_percentage.Rd         |only
 man/var_of_proportion.Rd         |only
 man/weighted_mean_effect_size.Rd |   12 +-
 40 files changed, 690 insertions(+), 122 deletions(-)

More information about kim at CRAN
Permanent link

Package geostan updated to version 0.5.0 with previous version 0.4.1 dated 2022-12-04

Title: Bayesian Spatial Analysis
Description: For Bayesian inference with spatial data, provides exploratory spatial analysis tools, multiple spatial model specifications, spatial model diagnostics, and special methods for inference with small area survey data (e.g., the America Community Survey (ACS)) and censored population health surveillance data. Models are pre-specified using the Stan programming language, a platform for Bayesian inference using Markov chain Monte Carlo (MCMC). References: Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Donegan (2021) <doi:10.31219/osf.io/3ey65>; Donegan (2022) <doi:10.21105/joss.04716>; Donegan, Chun and Hughes (2020) <doi:10.1016/j.spasta.2020.100450>; Donegan, Chun and Griffith (2021) <doi:10.3390/ijerph18136856>; Morris et al. (2019) <doi:10.1016/j.sste.2019.100301>.
Author: Connor Donegan [aut, cre] , Mitzi Morris [ctb]
Maintainer: Connor Donegan <connor.donegan@gmail.com>

Diff between geostan versions 0.4.1 dated 2022-12-04 and 0.5.0 dated 2023-05-29

 DESCRIPTION                              |   10 -
 MD5                                      |   87 ++++++++------
 NAMESPACE                                |    3 
 NEWS.md                                  |   16 ++
 R/convenience-functions.R                |    6 -
 R/geostan-package.R                      |    4 
 R/geostan_fit-methods.R                  |    1 
 R/internal-functions.R                   |   15 ++
 R/priors.R                               |    7 +
 R/raster-analysis.R                      |only
 R/stan_car.R                             |  146 ++++++++-----------------
 R/stan_esf.R                             |  117 +++++---------------
 R/stan_glm.R                             |  107 ++++++++++--------
 R/stan_icar.R                            |  164 +++++++++-------------------
 R/stan_sar.R                             |  181 +++++++++++--------------------
 R/stanmodels.R                           |    2 
 README.md                                |   41 +++----
 build/partial.rdb                        |binary
 build/vignette.rds                       |binary
 inst/doc/measuring-sa.html               |   14 +-
 inst/doc/raster-regression.R             |only
 inst/doc/raster-regression.Rmd           |only
 inst/doc/raster-regression.html          |only
 inst/doc/spatial-me-models.R             |   22 +++
 inst/doc/spatial-me-models.Rmd           |   45 +++++--
 inst/doc/spatial-me-models.html          |  115 ++++++++++++-------
 man/eigen_grid.Rd                        |only
 man/figures/README-unnamed-chunk-5-1.png |binary
 man/geostan-package.Rd                   |    4 
 man/prep_car_data.Rd                     |    4 
 man/prep_car_data2.Rd                    |only
 man/prep_sar_data2.Rd                    |only
 man/priors.Rd                            |    7 +
 man/stan_car.Rd                          |  117 ++++----------------
 man/stan_esf.Rd                          |  107 ++++--------------
 man/stan_glm.Rd                          |   86 +++++++-------
 man/stan_icar.Rd                         |  150 ++++++++-----------------
 man/stan_sar.Rd                          |  139 ++++++-----------------
 src/Makevars                             |    5 
 src/Makevars.win                         |    3 
 src/stanExports_foundation.cc            |    2 
 tests/testthat/test-stan-car.R           |   32 +++++
 tests/testthat/test-stan-esf.R           |   35 +++++
 tests/testthat/test-stan-glm.R           |   24 ++++
 tests/testthat/test-stan-icar.R          |   35 +++++
 tests/testthat/test-stan-sar.R           |   30 ++++-
 vignettes/raster-regression.Rmd          |only
 vignettes/raster.bib                     |only
 vignettes/spatial-me-models.Rmd          |   45 +++++--
 49 files changed, 906 insertions(+), 1022 deletions(-)

More information about geostan at CRAN
Permanent link

New package EBEN with initial version 5.1
Package: EBEN
Title: Empirical Bayesian Elastic Net
Version: 5.1
Date: 2023-5-28
Author: Anhui Huang
Maintainer: Anhui Huang <anhuihuang@gmail.com>
Description: Provides the Empirical Bayesian Elastic Net for handling multicollinearity in generalized linear regression models. As a special case of the 'EBglmnet' package (also available on CRAN), this package encourages a grouping effects to select relevant variables and estimate the corresponding non-zero effects.
License: GPL
Packaged: 2023-05-29 02:52:26 UTC; anhui
Depends: R (>= 2.10)
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2023-05-29 16:40:02 UTC

More information about EBEN at CRAN
Permanent link

Package delaunay updated to version 2.0.0 with previous version 1.1.1 dated 2022-10-19

Title: 2d, 2.5d, and 3d Delaunay Tessellations
Description: Construction and visualization of 2d Delaunay triangulations, possibly constrained, 2.5d (i.e. elevated) Delaunay triangulations, 3d Delaunay triangulations, and 2D Voronoï tessellations.
Author: Stephane Laurent
Maintainer: Stephane Laurent <laurent_step@outlook.fr>

Diff between delaunay versions 1.1.1 dated 2022-10-19 and 2.0.0 dated 2023-05-29

 DESCRIPTION           |   12 +--
 MD5                   |   26 ++++----
 NAMESPACE             |    5 +
 NEWS.md               |    5 +
 R/delaunay.R          |  151 ++++++++++++++++++++++++++++++--------------------
 R/voronoi.R           |only
 README.md             |    7 ++
 man/Voronoi.Rd        |only
 man/delaunay.Rd       |   86 +++++++++++++++++++---------
 man/plotDelaunay2D.Rd |    6 -
 man/plotVoronoi.Rd    |only
 src/RcppExports.cpp   |    2 
 src/del2D.cpp         |   44 +++++++++-----
 src/del2DC.cpp        |   31 +++++++---
 src/delaunay.h        |   16 +++++
 src/meshinfo.cpp      |only
 16 files changed, 260 insertions(+), 131 deletions(-)

More information about delaunay at CRAN
Permanent link

Package pgenlibr (with last version 0.3.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-05-24 0.3.3

Permanent link
Package LRTesteR updated to version 1.1.0 with previous version 1.0.2 dated 2023-03-29

Title: Likelihood Ratio Tests and Confidence Intervals
Description: A collection of hypothesis tests and confidence intervals based on the likelihood ratio <https://en.wikipedia.org/wiki/Likelihood-ratio_test>.
Author: Greg McMahan
Maintainer: Greg McMahan <gmcmacran@gmail.com>

Diff between LRTesteR versions 1.0.2 dated 2023-03-29 and 1.1.0 dated 2023-05-29

 LRTesteR-1.0.2/LRTesteR/R/empirical_tests.R                                 |only
 LRTesteR-1.0.2/LRTesteR/tests/testthat/test_empirical_tests.R               |only
 LRTesteR-1.1.0/LRTesteR/DESCRIPTION                                         |    8 
 LRTesteR-1.1.0/LRTesteR/MD5                                                 |   72 ++--
 LRTesteR-1.1.0/LRTesteR/NAMESPACE                                           |    2 
 LRTesteR-1.1.0/LRTesteR/NEWS.md                                             |    4 
 LRTesteR-1.1.0/LRTesteR/R/a_function_factories_case_one.R                   |  164 ----------
 LRTesteR-1.1.0/LRTesteR/R/a_function_factories_case_two.R                   |    8 
 LRTesteR-1.1.0/LRTesteR/R/beta_tests.R                                      |   20 -
 LRTesteR-1.1.0/LRTesteR/R/binomial_tests.R                                  |    2 
 LRTesteR-1.1.0/LRTesteR/R/cauchy_tests.R                                    |   14 
 LRTesteR-1.1.0/LRTesteR/R/empirical_mu_tests.R                              |only
 LRTesteR-1.1.0/LRTesteR/R/empirical_quantile_tests.R                        |only
 LRTesteR-1.1.0/LRTesteR/R/exponential_tests.R                               |    2 
 LRTesteR-1.1.0/LRTesteR/R/gamma_tests.R                                     |   32 -
 LRTesteR-1.1.0/LRTesteR/R/gaussian_tests.R                                  |   10 
 LRTesteR-1.1.0/LRTesteR/R/inverse_gaussian_tests.R                          |   12 
 LRTesteR-1.1.0/LRTesteR/R/negative_binomial_tests.R                         |    2 
 LRTesteR-1.1.0/LRTesteR/R/poisson_tests.R                                   |    2 
 LRTesteR-1.1.0/LRTesteR/R/print.R                                           |    2 
 LRTesteR-1.1.0/LRTesteR/README.md                                           |   40 +-
 LRTesteR-1.1.0/LRTesteR/build/vignette.rds                                  |binary
 LRTesteR-1.1.0/LRTesteR/inst/doc/Analysis_of_Deviance.R                     |    8 
 LRTesteR-1.1.0/LRTesteR/inst/doc/Analysis_of_Deviance.Rmd                   |   10 
 LRTesteR-1.1.0/LRTesteR/inst/doc/Analysis_of_Deviance.html                  |   45 +-
 LRTesteR-1.1.0/LRTesteR/inst/doc/Nonparametric_Tests.R                      |   39 +-
 LRTesteR-1.1.0/LRTesteR/inst/doc/Nonparametric_Tests.Rmd                    |   64 ++-
 LRTesteR-1.1.0/LRTesteR/inst/doc/Nonparametric_Tests.html                   |  144 +++++---
 LRTesteR-1.1.0/LRTesteR/man/empirical_mu_one_sample.Rd                      |    4 
 LRTesteR-1.1.0/LRTesteR/man/empirical_mu_one_way.Rd                         |   10 
 LRTesteR-1.1.0/LRTesteR/man/empirical_quantile_one_sample.Rd                |only
 LRTesteR-1.1.0/LRTesteR/man/empirical_quantile_one_way.Rd                   |only
 LRTesteR-1.1.0/LRTesteR/tests/testthat/test_a_function_factories_case_one.R |    6 
 LRTesteR-1.1.0/LRTesteR/tests/testthat/test_a_function_factories_case_two.R |    2 
 LRTesteR-1.1.0/LRTesteR/tests/testthat/test_binomial_tests.R                |    6 
 LRTesteR-1.1.0/LRTesteR/tests/testthat/test_empirical_mu_tests.R            |only
 LRTesteR-1.1.0/LRTesteR/tests/testthat/test_empirical_quantile_tests.R      |only
 LRTesteR-1.1.0/LRTesteR/tests/testthat/test_negative_binomial_tests.R       |    7 
 LRTesteR-1.1.0/LRTesteR/tests/testthat/test_print.R                         |    2 
 LRTesteR-1.1.0/LRTesteR/vignettes/Analysis_of_Deviance.Rmd                  |   10 
 LRTesteR-1.1.0/LRTesteR/vignettes/Nonparametric_Tests.Rmd                   |   64 ++-
 41 files changed, 402 insertions(+), 415 deletions(-)

More information about LRTesteR at CRAN
Permanent link

Package jstable updated to version 1.1.1 with previous version 1.1.0 dated 2023-05-05

Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] , Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>

Diff between jstable versions 1.1.0 dated 2023-05-05 and 1.1.1 dated 2023-05-29

 DESCRIPTION           |    8 ++++----
 MD5                   |   10 +++++-----
 NEWS.md               |    4 ++++
 R/label.R             |   22 +++++++++++-----------
 build/vignette.rds    |binary
 inst/doc/jstable.html |   32 ++++++++++++++++----------------
 6 files changed, 40 insertions(+), 36 deletions(-)

More information about jstable at CRAN
Permanent link

Package curvHDR updated to version 1.2-2 with previous version 1.2-1.1 dated 2022-11-21

Title: Filtering of Flow Cytometry Samples
Description: Filtering, also known as gating, of flow cytometry samples using the curvHDR method, which is described in Naumann, U., Luta, G. and Wand, M.P. (2010) <DOI:10.1186/1471-2105-11-44>.
Author: Matt Wand [aut, cre], George Luta [aut], Ulrike Naumann [aut], Mathew W. McLean [ctb], Dai Feng [ctb], Luke Tierney [ctb], Florian Hahne [ctb]
Maintainer: Matt Wand <matt.wand@uts.edu.au>

Diff between curvHDR versions 1.2-1.1 dated 2022-11-21 and 1.2-2 dated 2023-05-29

 curvHDR-1.2-1.1/curvHDR/vignettes/glmmEP.pdf |only
 curvHDR-1.2-2/curvHDR/DESCRIPTION            |   10 +++++-----
 curvHDR-1.2-2/curvHDR/MD5                    |    9 ++++-----
 curvHDR-1.2-2/curvHDR/build/vignette.rds     |binary
 curvHDR-1.2-2/curvHDR/inst/doc/manual.pdf    |binary
 curvHDR-1.2-2/curvHDR/man/curvHDRvignette.Rd |    6 ++++--
 6 files changed, 13 insertions(+), 12 deletions(-)

More information about curvHDR at CRAN
Permanent link

Package alone updated to version 0.2 with previous version 0.1.1 dated 2023-01-29

Title: Datasets from the Survival TV Series Alone
Description: A collection of datasets on the Alone survival TV series in tidy format. Included in the package are 4 datasets detailing the survivors, their loadouts, episode details and season information.
Author: Daniel Oehm [aut, cre]
Maintainer: Daniel Oehm <danieloehm@gmail.com>

Diff between alone versions 0.1.1 dated 2023-01-29 and 0.2 dated 2023-05-29

 DESCRIPTION           |    6 +++---
 MD5                   |   20 ++++++++++----------
 NEWS.md               |   12 ++++++++++++
 R/datasets.R          |   10 +++++++---
 data/episodes.rda     |binary
 data/loadouts.rda     |binary
 data/seasons.rda      |binary
 data/survivalists.rda |binary
 man/episodes.Rd       |    2 ++
 man/seasons.Rd        |    1 +
 man/survivalists.Rd   |    7 ++++---
 11 files changed, 39 insertions(+), 19 deletions(-)

More information about alone at CRAN
Permanent link

Package woodendesc (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-04-18 0.1.0

Permanent link

Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.