Title: Cluster Evaluation on Graphs
Description: Evaluates the stability and significance of clusters on 'igraph' graphs.
Supports weighted and unweighted graphs. Implements the cluster evaluation methods
defined by Arratia A, Renedo M (2021) <doi:10.7717/peerj-cs.600>. Also includes an
implementation of the Reduced Mutual Information introduced by Newman et al. (2020)
<doi:10.1103/PhysRevE.101.042304>.
Author: Marti Renedo Mirambell
Maintainer: Marti Renedo Mirambell <marti.renedo@gmail.com>
Diff between clustAnalytics versions 0.5.2 dated 2022-11-09 and 0.5.4 dated 2023-06-03
clustAnalytics-0.5.2/clustAnalytics/src/Makevars |only clustAnalytics-0.5.4/clustAnalytics/DESCRIPTION | 12 clustAnalytics-0.5.4/clustAnalytics/MD5 | 53 - clustAnalytics-0.5.4/clustAnalytics/R/RcppExports.R | 9 clustAnalytics-0.5.4/clustAnalytics/R/scoring_functions.R | 5 clustAnalytics-0.5.4/clustAnalytics/R/stability_functions.R | 9 clustAnalytics-0.5.4/clustAnalytics/build/partial.rdb |binary clustAnalytics-0.5.4/clustAnalytics/build/vignette.rds |binary clustAnalytics-0.5.4/clustAnalytics/inst/doc/cluster_stability.html | 230 ----- clustAnalytics-0.5.4/clustAnalytics/inst/doc/graph_rewiring_functions.html | 258 ------ clustAnalytics-0.5.4/clustAnalytics/inst/doc/other_functions.html | 267 ------ clustAnalytics-0.5.4/clustAnalytics/inst/doc/scoring_functions.html | 222 ----- clustAnalytics-0.5.4/clustAnalytics/inst/doc/stability_significance_examples.html | 392 ++-------- clustAnalytics-0.5.4/clustAnalytics/man/boot_alg_list.Rd | 4 clustAnalytics-0.5.4/clustAnalytics/man/c_rs_table.Rd | 36 clustAnalytics-0.5.4/clustAnalytics/man/contingency_to_membership_vectors.Rd | 38 clustAnalytics-0.5.4/clustAnalytics/man/count_contingency_tables_log.Rd | 46 - clustAnalytics-0.5.4/clustAnalytics/man/estimate_H_fraction_r_rows.Rd | 40 - clustAnalytics-0.5.4/clustAnalytics/man/estimate_H_fractions.Rd | 46 - clustAnalytics-0.5.4/clustAnalytics/man/evaluate_significance.Rd | 4 clustAnalytics-0.5.4/clustAnalytics/man/evaluate_significance_r.Rd | 4 clustAnalytics-0.5.4/clustAnalytics/man/igraph_to_edgelist.Rd | 40 - clustAnalytics-0.5.4/clustAnalytics/man/log_omega_estimation.Rd | 36 clustAnalytics-0.5.4/clustAnalytics/man/make_graph_weighted.Rd | 40 - clustAnalytics-0.5.4/clustAnalytics/man/relabel.Rd | 36 clustAnalytics-0.5.4/clustAnalytics/man/sort_matrix.Rd | 36 clustAnalytics-0.5.4/clustAnalytics/man/walk_step.Rd | 42 - clustAnalytics-0.5.4/clustAnalytics/src/count_contingency_tables_new.cpp | 14 28 files changed, 448 insertions(+), 1471 deletions(-)
More information about clustAnalytics at CRAN
Permanent link
Title: 3D Brain Visualization
Description: A fast, interactive cross-platform, and easy to share
'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or
'AFNI/SUMA' surfaces. The viewer widget can be either standalone or
embedded into 'R-shiny' applications. The standalone version only require
a web browser with 'WebGL2' support (for example, 'Chrome', 'Firefox',
'Safari'), and can be inserted into any websites. The 'R-shiny'
support allows the 3D viewer to be dynamically generated from reactive user
inputs. This feature has been fully adopted by 'RAVE'
<https://openwetware.org/wiki/RAVE>, an interactive toolbox to
analyze 'iEEG' data. Documentation about 'threeBrain' is provided
by <https://dipterix.org/threeBrain/> and several vignettes included
in this package. To cite the package, please check our 'NeuroImage' paper
by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>),
or see 'citation("threeBrain")' for details.
Author: Zhengjia Wang [aut, cre, cph],
John Magnotti [aut, res],
Xiang Zhang [ctb, res],
Brian Metzger [res],
Elizabeth Nesbitt [res],
Meng Li [ths],
Michael Beauchamp [ths, dtc]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between threeBrain versions 0.2.9 dated 2023-03-14 and 1.0.0 dated 2023-06-03
threeBrain-0.2.9/threeBrain/R/viewer_ctint1.R |only threeBrain-0.2.9/threeBrain/inst/doc/B-electrode-localization.R |only threeBrain-0.2.9/threeBrain/inst/doc/B-electrode-localization.Rmd |only threeBrain-0.2.9/threeBrain/inst/doc/B-electrode-localization.html |only threeBrain-0.2.9/threeBrain/inst/doc/C-data-visualization.R |only threeBrain-0.2.9/threeBrain/inst/doc/C-data-visualization.Rmd |only threeBrain-0.2.9/threeBrain/inst/doc/C-data-visualization.html |only threeBrain-0.2.9/threeBrain/man/view_ct_t1.Rd |only threeBrain-0.2.9/threeBrain/vignettes/B-electrode-localization.Rmd |only threeBrain-0.2.9/threeBrain/vignettes/C-data-visualization.Rmd |only threeBrain-1.0.0/threeBrain/DESCRIPTION | 8 threeBrain-1.0.0/threeBrain/MD5 | 48 +--- threeBrain-1.0.0/threeBrain/NAMESPACE | 1 threeBrain-1.0.0/threeBrain/NEWS.md | 14 + threeBrain-1.0.0/threeBrain/R/aaa.R | 7 threeBrain-1.0.0/threeBrain/R/class_brain.R | 109 +++++++++ threeBrain-1.0.0/threeBrain/R/class_proxy.R | 11 threeBrain-1.0.0/threeBrain/R/fs_import-xform.R | 19 + threeBrain-1.0.0/threeBrain/R/loaders.R | 7 threeBrain-1.0.0/threeBrain/R/shiny-localization.R | 17 - threeBrain-1.0.0/threeBrain/R/threeBrain.R | 2 threeBrain-1.0.0/threeBrain/R/threejs_brain.R | 80 ++++++ threeBrain-1.0.0/threeBrain/build/vignette.rds |binary threeBrain-1.0.0/threeBrain/inst/WORDLIST | 2 threeBrain-1.0.0/threeBrain/inst/doc/A-getting-started.html | 120 +++++----- threeBrain-1.0.0/threeBrain/inst/doc/B-data-visualization.R |only threeBrain-1.0.0/threeBrain/inst/doc/B-data-visualization.Rmd |only threeBrain-1.0.0/threeBrain/inst/doc/B-data-visualization.html |only threeBrain-1.0.0/threeBrain/inst/threeBrainJS/dist/threebrain.js | 2 threeBrain-1.0.0/threeBrain/inst/threeBrainJS/dist/threebrain.js.LICENSE.txt | 2 threeBrain-1.0.0/threeBrain/man/threejs_brain.Rd | 3 threeBrain-1.0.0/threeBrain/vignettes/B-data-visualization.Rmd |only 32 files changed, 330 insertions(+), 122 deletions(-)
Title: Bayesian Spatial Analysis
Description: For Bayesian inference with spatial data, provides exploratory spatial analysis tools, multiple spatial model specifications, spatial model diagnostics, and special methods for inference with small area survey data (e.g., the America Community Survey (ACS)) and censored population health surveillance data. Models are pre-specified using the Stan programming language, a platform for Bayesian inference using Markov chain Monte Carlo (MCMC). References: Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Donegan (2021) <doi:10.31219/osf.io/3ey65>; Donegan (2022) <doi:10.21105/joss.04716>; Donegan, Chun and Hughes (2020) <doi:10.1016/j.spasta.2020.100450>; Donegan, Chun and Griffith (2021) <doi:10.3390/ijerph18136856>; Morris et al. (2019) <doi:10.1016/j.sste.2019.100301>.
Author: Connor Donegan [aut, cre] ,
Mitzi Morris [ctb]
Maintainer: Connor Donegan <connor.donegan@gmail.com>
Diff between geostan versions 0.5.0 dated 2023-05-29 and 0.5.1 dated 2023-06-03
DESCRIPTION | 6 ++-- MD5 | 22 +++++++------- NEWS.md | 6 ++++ R/internal-functions.R | 4 +- R/stan_icar.R | 2 - inst/doc/measuring-sa.html | 12 ++++---- inst/doc/raster-regression.html | 59 +++++++++++++++++++++------------------- inst/doc/spatial-me-models.Rmd | 4 +- inst/doc/spatial-me-models.html | 48 ++++++++++++++++---------------- man/stan_icar.Rd | 2 - tests/testthat/test-stan-glm.R | 20 +++++++++++++ vignettes/spatial-me-models.Rmd | 4 +- 12 files changed, 107 insertions(+), 82 deletions(-)
Title: Functions for Common Chart Types
Description: Wrapper for the 'ggplot2' package that creates a variety of common
charts (e.g. bar, line, area, ROC, waterfall, pie) while aiming to reduce
typing.
Author: Wojtek Kostelecki
Maintainer: Wojtek Kostelecki <wojtek.kostelecki@gmail.com>
Diff between ezplot versions 0.7.5 dated 2022-11-26 and 0.7.7 dated 2023-06-03
DESCRIPTION | 8 +++--- MD5 | 26 ++++++++++----------- NEWS.md | 6 +++++ R/bar_plot.R | 36 +++++++++++++++++++++++------- R/line_plot.R | 1 README.md | 17 +++++++------- build/vignette.rds |binary inst/doc/basics.html | 4 +-- man/bar_plot.Rd | 4 ++- man/figures/README-bar_plot-1-1.png |binary man/figures/README-bar_plot-2-1.png |binary man/figures/README-bar_plot-3-1.png |binary man/figures/README-side_plot-1-1.png |binary man/figures/README-waterfall_plot-1-1.png |binary 14 files changed, 66 insertions(+), 36 deletions(-)
Title: Import and Handling for Plain and Formatted Text Files
Description: Functions for importing and handling text files and formatted text
files with additional meta-data, such including '.csv', '.tab', '.json', '.xml',
'.html', '.pdf', '.doc', '.docx', '.rtf', '.xls', '.xlsx', and others.
Author: Kenneth Benoit [aut, cre, cph],
Adam Obeng [aut],
Kohei Watanabe [ctb],
Akitaka Matsuo [ctb],
Paul Nulty [ctb],
Stefan Mueller [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between readtext versions 0.82 dated 2023-04-06 and 0.90 dated 2023-06-03
readtext-0.82/readtext/man/docnames.Rd |only readtext-0.82/readtext/man/docvars.Rd |only readtext-0.90/readtext/DESCRIPTION | 6 +- readtext-0.90/readtext/MD5 | 18 +++----- readtext-0.90/readtext/NAMESPACE | 4 - readtext-0.90/readtext/NEWS.md | 6 ++ readtext-0.90/readtext/R/quanteda-methods.R | 30 -------------- readtext-0.90/readtext/README.md | 4 - readtext-0.90/readtext/build/vignette.rds |binary readtext-0.90/readtext/inst/doc/readtext_vignette.html | 10 ++-- readtext-0.90/readtext/tests/testthat/test-readtext.R | 35 ++++++++--------- 11 files changed, 41 insertions(+), 72 deletions(-)
Title: Create Interactive Web Graphics via 'plotly.js'
Description: Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.
Author: Carson Sievert [aut, cre] ,
Chris Parmer [aut],
Toby Hocking [aut],
Scott Chamberlain [aut],
Karthik Ram [aut],
Marianne Corvellec [aut] ,
Pedro Despouy [aut],
Salim Brueggemann [ctb] ,
Plotly Technologies Inc. [cph]
Maintainer: Carson Sievert <cpsievert1@gmail.com>
Diff between plotly versions 4.10.1 dated 2022-11-07 and 4.10.2 dated 2023-06-03
plotly-4.10.1/plotly/tests/testthat/Rplots.pdf |only plotly-4.10.1/plotly/tests/testthat/_snaps/plotly-linetype/plotly-linetype-manual.new.svg |only plotly-4.10.1/plotly/tests/testthat/_snaps/plotly-subplot/subplot-reposition-shape-fixed.new.svg |only plotly-4.10.2/plotly/DESCRIPTION | 17 - plotly-4.10.2/plotly/MD5 | 84 ++++---- plotly-4.10.2/plotly/NEWS.md | 21 +- plotly-4.10.2/plotly/R/ggplotly.R | 104 ++++++++-- plotly-4.10.2/plotly/R/highlight.R | 8 plotly-4.10.2/plotly/R/kaleido.R | 2 plotly-4.10.2/plotly/R/layers2traces.R | 10 plotly-4.10.2/plotly/R/utils.R | 85 +++++--- plotly-4.10.2/plotly/inst/CITATION | 5 plotly-4.10.2/plotly/inst/examples/shiny/event_data/tests/shinytest/mytest-expected/001.png |binary plotly-4.10.2/plotly/inst/examples/shiny/event_data/tests/shinytest/mytest-expected/002.png |binary plotly-4.10.2/plotly/inst/examples/shiny/event_data/tests/shinytest/mytest-expected/003.png |binary plotly-4.10.2/plotly/inst/examples/shiny/event_data/tests/shinytest/mytest-expected/004.png |binary plotly-4.10.2/plotly/inst/examples/shiny/event_data/tests/shinytest/mytest.R | 1 plotly-4.10.2/plotly/inst/htmlwidgets/plotly.js | 18 - plotly-4.10.2/plotly/man/highlight.Rd | 6 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-heatmap/heatmap-discrete.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-heatmap/heatmap-midpoint.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-heatmap/heatmap.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-hex/hex-basic.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-hex/hex-bins.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-hex/hex-binwidth.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-histogram/histogram-fill.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-legend/respect-guides.svg |only plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-map/map-facet.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-path/path-colors.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-segment/segment-multiple-non-numeric.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-sf/sf-fill-text.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-step/step-ecdf-multiple.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-step/step-ecdf.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-summary |only plotly-4.10.2/plotly/tests/testthat/_snaps/ggplot-tooltip/heatmap-discrete-tooltip.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/plotly-linetype/plotly-linetype-manual.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/plotly-subplot/ggally-ggcorr.svg | 2 plotly-4.10.2/plotly/tests/testthat/_snaps/plotly-subplot/subplot-reposition-shape-fixed.svg | 2 plotly-4.10.2/plotly/tests/testthat/test-animate-highlight.R | 44 ++++ plotly-4.10.2/plotly/tests/testthat/test-cookbook-axes.R | 4 plotly-4.10.2/plotly/tests/testthat/test-ggplot-area.R | 15 + plotly-4.10.2/plotly/tests/testthat/test-ggplot-blank.R | 1 plotly-4.10.2/plotly/tests/testthat/test-ggplot-dynamicTicks.R | 4 plotly-4.10.2/plotly/tests/testthat/test-ggplot-legend.R | 35 +++ plotly-4.10.2/plotly/tests/testthat/test-ggplot-polygons.R | 1 plotly-4.10.2/plotly/tests/testthat/test-ggplot-summary.R |only 46 files changed, 364 insertions(+), 135 deletions(-)
Title: Single-Case Data Analyses for Single and Multiple Baseline
Designs
Description: A collection of procedures for analysing, visualising,
and managing single-case data. These include piecewise linear regression
models, multilevel models, overlap indices ('PND', 'PEM', 'PAND', 'PET', 'tau-u',
'baseline corrected tau', 'CDC'), and randomization tests. Data preparation functions
support outlier detection, handling missing values, scaling, truncation,
rank transformation, and smoothing. An export function helps to generate
html and latex tables in a publication friendly style. More details can be
found in the online book 'Analyzing single-case data with R and scan', Juergen Wilbert (2023)
<https://jazznbass.github.io/scan-Book/>.
Author: Juergen Wilbert [cre, aut] ,
Timo Lueke [aut]
Maintainer: Juergen Wilbert <juergen.wilbert@uni-potsdam.de>
Diff between scan versions 0.58 dated 2023-05-24 and 0.59.0 dated 2023-06-03
DESCRIPTION | 14 +- MD5 | 84 ++++++++------ NAMESPACE | 3 NEWS.md | 4 R/describe.R | 27 ++-- R/export.sc_overlap.R | 4 R/export.sc_tauu.R | 14 +- R/pipe.R | 9 - R/pkg-package.R | 2 R/print.sc_tauu.R | 2 R/privat-rename_phase_duplicates.R |only R/private_prepare_scdf.R | 11 - R/rand_test.R | 104 ++++++++++-------- R/read_scdf.R | 31 ++--- R/scdf.R | 4 R/shinyscan.R | 55 +++++++-- R/tau_u.R | 47 ++++---- inst/CITATION | 2 inst/rstudio |only inst/shiny/resources.R | 90 +++++---------- inst/shiny/server.R | 195 ++++++++++++++++++++++++++-------- inst/shiny/ui.R | 151 +++++++++++++++++--------- inst/shiny/www |only man/add_l2.Rd | 2 man/as.data.frame.scdf.Rd | 2 man/as_scdf.Rd | 2 man/fill_missing.Rd | 2 man/outlier.Rd | 2 man/pipe.Rd | 7 - man/rand_test.Rd | 62 +++++----- man/ranks.Rd | 2 man/read_scdf.Rd | 24 +--- man/scdf.Rd | 2 man/select_cases.Rd | 2 man/set_vars.Rd | 2 man/shift.Rd | 2 man/shinyscan.Rd | 13 ++ man/smooth_cases.Rd | 2 man/standardize.Rd | 2 man/tau_u.Rd | 24 ++-- man/transform.scdf.Rd | 2 man/truncate_phase.Rd | 2 tests/testthat/test-design.R |only tests/testthat/test-estimate_design.R |only tests/testthat/test-fill_missing.R |only tests/testthat/test-hplm.R |only tests/testthat/test-overlap.R |only 47 files changed, 597 insertions(+), 414 deletions(-)
Title: Extract 'REDCap' Databases into Tidy 'Tibble's
Description: Convert 'REDCap' exports into tidy tables for easy handling of 'REDCap' repeat instruments and event arms.
Author: Richard Hanna [aut, cre],
Stephan Kadauke [aut],
Ezra Porter [aut]
Maintainer: Richard Hanna <richardshanna91@gmail.com>
Diff between REDCapTidieR versions 0.3.0 dated 2023-03-17 and 0.4.0 dated 2023-06-03
REDCapTidieR-0.3.0/REDCapTidieR/R/deprecated.R |only REDCapTidieR-0.3.0/REDCapTidieR/man/deprecated.Rd |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-09010e-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-0efc24-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-167271-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-36bd61-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-535b2e-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-6c6a70-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-7be96b-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-82f254-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-b113bd-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/fixtures/my.institution.edu/redcap/api-d09168-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/tests/testthat/test-deprecated.R |only REDCapTidieR-0.3.0/REDCapTidieR/vignettes/REDCapTidieR/0/my.institution.edu/redcap/api-160502-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/vignettes/diving_deeper/0/my.institution.edu/redcap/api-160502-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/vignettes/diving_deeper/0/my.institution.edu/redcap/api-535b2e-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/vignettes/diving_deeper/0/my.institution.edu/redcap/api-90501e-POST.csv |only REDCapTidieR-0.3.0/REDCapTidieR/vignettes/longitudinal_redcap.R |only REDCapTidieR-0.4.0/REDCapTidieR/DESCRIPTION | 13 REDCapTidieR-0.4.0/REDCapTidieR/MD5 | 147 +++++---- REDCapTidieR-0.4.0/REDCapTidieR/NAMESPACE | 18 - 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Title: Sampling and Estimation Methods
Description: Functions to take samples of data, sample size estimation and getting useful estimators such as total, mean, proportion about its population using simple random, stratified, systematic and cluster sampling.
Author: Javier Estevez [aut, cre, cph]
Maintainer: Javier Estevez <javier.estase@gmail.com>
Diff between samplingR versions 0.1.4 dated 2023-05-20 and 0.1.5 dated 2023-06-03
samplingR-0.1.4/samplingR/man/sys.corrwst.Rd |only samplingR-0.1.5/samplingR/DESCRIPTION | 10 ++-- samplingR-0.1.5/samplingR/MD5 | 43 ++++++++++------- samplingR-0.1.5/samplingR/NAMESPACE | 4 + samplingR-0.1.5/samplingR/R/cluster.estimator.R |only samplingR-0.1.5/samplingR/R/cluster.sample.R |only samplingR-0.1.5/samplingR/R/cluster.samplesize.R |only samplingR-0.1.5/samplingR/R/cluster.utils.R |only samplingR-0.1.5/samplingR/R/srs.domainestimator.R | 4 - samplingR-0.1.5/samplingR/R/srs.estimator.R | 20 ++++---- samplingR-0.1.5/samplingR/R/strata.allocation.R | 47 ++++++++++++------- samplingR-0.1.5/samplingR/R/strata.estimator.R | 13 ++--- samplingR-0.1.5/samplingR/R/strata.sample.R | 4 - samplingR-0.1.5/samplingR/R/strata.samplesize.R | 14 +++-- samplingR-0.1.5/samplingR/R/strata.samplesize.cost.R | 4 + samplingR-0.1.5/samplingR/R/sys.estimator.R | 9 +-- samplingR-0.1.5/samplingR/R/sys.utils.R | 19 ++++++- samplingR-0.1.5/samplingR/build |only samplingR-0.1.5/samplingR/inst |only samplingR-0.1.5/samplingR/man/cluster.estimator.Rd |only samplingR-0.1.5/samplingR/man/cluster.sample.Rd |only samplingR-0.1.5/samplingR/man/strata.allocation.Rd | 23 ++++++++- samplingR-0.1.5/samplingR/man/strata.samplesize.Rd | 2 samplingR-0.1.5/samplingR/man/sys.estimator.Rd | 5 -- samplingR-0.1.5/samplingR/man/sys.intercorr.Rd |only samplingR-0.1.5/samplingR/man/sys.intracorr.Rd | 8 +++ samplingR-0.1.5/samplingR/vignettes |only 27 files changed, 150 insertions(+), 79 deletions(-)
Title: An Alternative 'Rcpp' Wrapper of 'MeCab'
Description: A plain 'Rcpp' wrapper of 'MeCab' that can segment Chinese,
Japanese, and Korean text into tokens. The main goal of this package
is to provide an alternative to 'tidytext' using morphological
analysis.
Author: Akiru Kato [aut, cre],
Shogo Ichinose [aut],
Taku Kudo [aut],
Jorge Nocedal [ctb],
Nippon Telegraph and Telephone Corporation [cph]
Maintainer: Akiru Kato <paithiov909@gmail.com>
Diff between gibasa versions 0.9.3 dated 2023-04-20 and 0.9.4 dated 2023-06-03
gibasa-0.9.3/gibasa/tests/testthat/test-bind_tf_idf2.R |only gibasa-0.9.4/gibasa/DESCRIPTION | 10 +-- gibasa-0.9.4/gibasa/MD5 | 33 +++++------ gibasa-0.9.4/gibasa/NEWS.md | 4 + gibasa-0.9.4/gibasa/R/bind_tf_idf2.R | 24 ++++++++ gibasa-0.9.4/gibasa/R/other-reexports.R | 47 +++++++++++++++-- gibasa-0.9.4/gibasa/R/pack.R | 10 ++- gibasa-0.9.4/gibasa/R/prettify.R | 19 ++++++ gibasa-0.9.4/gibasa/R/tokenize.R | 13 ++-- gibasa-0.9.4/gibasa/R/utils.R | 2 gibasa-0.9.4/gibasa/README.md | 10 +-- gibasa-0.9.4/gibasa/build/partial.rdb |binary gibasa-0.9.4/gibasa/man/tokenize.Rd | 6 +- gibasa-0.9.4/gibasa/src/Makevars | 1 gibasa-0.9.4/gibasa/src/posDebug.cpp | 8 +- gibasa-0.9.4/gibasa/src/posParallel.cpp | 3 - gibasa-0.9.4/gibasa/tests/testthat/test-other-utils.R | 25 +++++---- gibasa-0.9.4/gibasa/tests/testthat/test-tokenize.R | 17 ++++++ 18 files changed, 170 insertions(+), 62 deletions(-)
Title: Plot Function for Single-Case Data Frames
Description: Add-on for the 'scan' package that creates plots
from single-case data frames ('scdf'). It includes functions for styling
single-case plots, adding phase-based lines to indicate various statistical
parameters, and predefined themes for presentations and publications. More
information and in depth examples can be found in the online book
"Analyzing Single-Case Data with R and 'scan"
Jürgen Wilbert (2023) <https://jazznbass.github.io/scan-Book/>.
Author: Juergen Wilbert [aut, cre]
Maintainer: Juergen Wilbert <juergen.wilbert@uni-potsdam.de>
Diff between scplot versions 0.3.1 dated 2023-05-08 and 0.3.3 dated 2023-06-03
DESCRIPTION | 12 ++--- MD5 | 42 +++++++++-------- NAMESPACE | 5 ++ NEWS.md | 111 ++++++++++++++++++++++++----------------------- R/add_arrow.R | 1 R/add_grid.R | 1 R/add_marks.R | 5 +- R/background_panel.R | 5 +- R/import-export.R |only R/new_theme.R | 9 ++- R/private_statline.R | 107 --------------------------------------------- R/scplot.R | 6 +- R/set_dataline.R | 3 - R/theme.R | 21 ++++---- man/add_arrow.Rd | 1 man/add_grid.Rd | 1 man/add_marks.Rd | 5 +- man/new_theme.Rd | 9 ++- man/reexports.Rd |only man/set_background.Rd | 5 +- man/set_dataline.Rd | 3 - man/set_theme.Rd | 4 - man/set_theme_element.Rd | 17 +++---- 23 files changed, 147 insertions(+), 226 deletions(-)
Title: Elastic Net with Dichotomised Outcomes
Description: Implements lasso and ridge regression for dichotomised outcomes (Rauschenberger et al. 2023). Such outcomes are not naturally but artificially binary. They indicate whether an underlying measurement is greater than a threshold.
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger@uni.lu>
Diff between cornet versions 0.0.7 dated 2023-02-16 and 0.0.8 dated 2023-06-03
DESCRIPTION | 10 +-- MD5 | 28 +++++------ NEWS.md | 6 +- R/functions.R | 53 +++++++++++++++------ README.md | 4 - build/vignette.rds |binary inst/doc/application.R | 37 +++++++++++--- inst/doc/application.Rmd | 41 ++++++++++++---- inst/doc/application.html | 116 ++++++++++++++++++++++++++-------------------- inst/doc/simulation.R | 13 ++--- inst/doc/simulation.Rmd | 15 +++-- inst/doc/simulation.html | 16 +++--- man/cv.cornet.Rd | 10 ++- vignettes/application.Rmd | 41 ++++++++++++---- vignettes/simulation.Rmd | 15 +++-- 15 files changed, 264 insertions(+), 141 deletions(-)
Title: Evaluate Clinical Prediction Models by Net Monetary Benefit
Description: Estimates when and where a model-guided treatment strategy may
outperform a treat-all or treat-none approach by Monte Carlo simulation and
evaluation of the Net Monetary Benefit. Details can be viewed in
Parsons et al. (2023) <doi:10.21105/joss.05328>.
Author: Rex Parsons [aut, cre] ,
Robin Blythe [aut] ,
Adrian Barnett [aut] ,
Emi Tanaka [rev] ,
Tinula Kariyawasam [rev] ,
Susanna Cramb [ctb] ,
Steven McPhail [ctb]
Maintainer: Rex Parsons <rex.parsons94@gmail.com>
Diff between predictNMB versions 0.2.0 dated 2023-05-19 and 0.2.1 dated 2023-06-03
DESCRIPTION | 8 MD5 | 90 +- NEWS.md | 20 R/autoplot.R | 28 R/ce_plot.R | 124 ++- R/do_nmb_sim.R | 5 R/evaluate_cutpoint.R | 21 R/get_nmb_sampler.R | 1 R/utils.R | 27 README.md | 27 inst/doc/creating-nmb-functions.R | 4 inst/doc/creating-nmb-functions.Rmd | 28 inst/doc/creating-nmb-functions.html | 153 ++-- inst/doc/detailed-example.Rmd | 16 inst/doc/detailed-example.html | 144 ++-- inst/doc/predictNMB.Rmd | 18 inst/doc/predictNMB.html | 62 - inst/doc/summarising-results-with-predictNMB.R | 14 inst/doc/summarising-results-with-predictNMB.Rmd | 41 - inst/doc/summarising-results-with-predictNMB.html | 343 +++++----- man/autoplot.predictNMBscreen.Rd | 4 man/autoplot.predictNMBsim.Rd | 2 man/ce_plot.Rd | 22 man/ce_plot.predictNMBsim.Rd | 21 man/do_nmb_sim.Rd | 7 man/evaluate_cutpoint_cost.Rd | 5 man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary tests/testthat/_snaps/autoplot/autoplot-predictnmbsim-obj-what-costs-default.svg |only tests/testthat/_snaps/autoplot/autoplot-predictnmbsim-obj-what-qalys-default.svg |only tests/testthat/_snaps/ce_plot/ce-plot-predictnmbsim-obj-all.svg | 2 tests/testthat/_snaps/ce_plot/ce-plot-predictnmbsim-obj-ce-shapes.svg |only tests/testthat/_snaps/ce_plot/ce-plot-predictnmbsim-obj-filled-points.svg | 2 tests/testthat/_snaps/ce_plot/ce-plot-predictnmbsim-obj-method-shapes.svg |only tests/testthat/_snaps/ce_plot/ce-plot-predictnmbsim-obj-methods-reorder.svg | 2 tests/testthat/_snaps/ce_plot/ce-plot-predictnmbsim-obj-none.svg | 2 tests/testthat/_snaps/ce_plot/ce-plot-predictnmbsim-obj-solid-wtp-linetype.svg |only tests/testthat/_snaps/ce_plot/ce-plot-predictnmbsim-obj-triangles.svg | 2 tests/testthat/_snaps/ce_plot/ce-plot-predictnmbsim-obj-twodash-wtp-linetype.svg |only tests/testthat/_snaps/ce_plot/ce-plot-predictnmbsim-obj-with-outcome-cost.svg |only tests/testthat/fixtures/predictNMBsim_ce_inc_outcomecost_object.rds |only tests/testthat/test-autoplot.R | 17 tests/testthat/test-ce_plot.R | 87 +- vignettes/creating-nmb-functions.Rmd | 28 vignettes/detailed-example.Rmd | 16 vignettes/fixtures/detailed_example-sim_pup_screen.rds |binary vignettes/predictNMB-vignettes.bib | 11 vignettes/predictNMB.Rmd | 18 vignettes/summarising-results-with-predictNMB.Rmd | 41 - 50 files changed, 886 insertions(+), 577 deletions(-)
Title: 'tidymodels' Integration with 'h2o'
Description: Create and evaluate models using 'tidymodels' and 'h2o' <https://h2o.ai/>. The
package enables users to specify 'h2o' as an engine for several
modeling methods.
Author: Max Kuhn [aut] ,
Qiushi Yan [aut, cre],
Steven Pawley [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Qiushi Yan <qiushi.yann@gmail.com>
Diff between agua versions 0.1.2 dated 2023-02-23 and 0.1.3 dated 2023-06-03
DESCRIPTION | 12 ++++++------ LICENSE | 4 ++-- MD5 | 24 ++++++++++++------------ NEWS.md | 6 ++++++ R/agua-package.R | 2 +- R/server.R | 3 +++ R/utils.R | 5 +++++ README.md | 2 +- man/agua-package.Rd | 8 ++++---- man/as_h2o.Rd | 8 ++++++-- man/rmd/agua-package-details.Rmd | 2 +- man/rmd/agua-package-details.md | 2 +- vignettes/articles/auto_ml.Rmd | 2 +- 13 files changed, 49 insertions(+), 31 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-19 0.3.0
2022-12-02 0.2.1
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau
APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's
geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping
and spatial analysis.
Author: Kyle Walker [aut, cre],
Matt Herman [aut],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tidycensus versions 1.4 dated 2023-05-27 and 1.4.1 dated 2023-06-03
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NAMESPACE | 1 + R/census.R | 37 ++++++++++++++++++++++--------------- R/helpers.R | 29 +++++++++++++++++++++++++++++ man/get_decennial.Rd | 6 ++---- man/summary_files.Rd |only 7 files changed, 64 insertions(+), 28 deletions(-)