Title: Distributional Synthetic Controls Estimation
Description: The method of synthetic controls is a widely-adopted tool for evaluating causal effects of policy changes in settings with observational data. In many settings where it is applicable, researchers want to identify causal effects of policy changes on a treated unit at an aggregate level while having access to data at a finer granularity. This package implements a simple extension of the synthetic controls estimator, developed in Gunsilius (2023) <doi:10.3982/ECTA18260>, that takes advantage of this additional structure and provides nonparametric estimates of the heterogeneity within the aggregate unit. The idea is to replicate the quantile function associated with the treated unit by a weighted average of quantile functions of the control units. The package contains tools for aggregating and plotting the resulting distributional estimates, as well as for carrying out inference on them.
Author: David Van Dijcke [aut, cre] ,
Florian Gunsilius [aut] ,
Siyun He [aut]
Maintainer: David Van Dijcke <dvdijcke@umich.edu>
Diff between DiSCos versions 0.1.0 dated 2024-05-13 and 0.1.1 dated 2024-07-22
DESCRIPTION | 16 ++-- MD5 | 20 ++--- R/DiSCo.R | 6 + R/DiSCoTEA.R | 6 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/Dube2019.R | 2 inst/doc/Dube2019.Rmd | 2 inst/doc/Dube2019.html | 142 +---------------------------------------- tests/testthat/test-DiSCoTEA.R | 2 vignettes/Dube2019.Rmd | 2 11 files changed, 37 insertions(+), 161 deletions(-)
Title: Access Databases from the Federal Statistical Office of Germany
Description: Retrieve and import data from different databases of the Federal Statistical Office of Germany (DESTATIS) using their SOAP XML web service <https://www-genesis.destatis.de/>.
Author: Moritz Marbach [aut, cre]
Maintainer: Moritz Marbach <m.marbach@ucl.ac.uk>
Diff between wiesbaden versions 1.2.9 dated 2023-02-17 and 1.2.10 dated 2024-07-22
DESCRIPTION | 13 +++-- MD5 | 32 +++++++------- NAMESPACE | 1 NEWS.md | 5 ++ R/read_gv100.R | 10 +--- R/read_header_genesis.R | 2 R/retrieve_data.R | 4 + R/save_credentials.R | 4 - R/wiesbaden-package.R | 4 - build/vignette.rds |binary inst/doc/wiesbaden.R | 2 inst/doc/wiesbaden.html | 100 ++++++++++++++++++++++----------------------- man/read_gv100.Rd | 7 +-- man/read_header_genesis.Rd | 2 man/retrieve_data.Rd | 4 + man/save_credentials.Rd | 5 -- man/wiesbaden-package.Rd | 2 17 files changed, 104 insertions(+), 93 deletions(-)
Title: 'WebSocket' Client Library
Description: Provides a 'WebSocket' client interface for R.
'WebSocket' is a protocol for low-overhead real-time communication:
<https://en.wikipedia.org/wiki/WebSocket>.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
Alan Dipert [aut],
Barbara Borges [aut],
Posit, PBC [cph],
Peter Thorson [ctb, cph] ,
Rene Nyffenegger [ctb, cph] ,
Micael Hildenborg [ctb, cph] ,
Aladdin Enterprises [cph] ,
Bjoern Hoehrmann [ctb, cph]
Maintainer: Winston Chang <winston@posit.co>
Diff between websocket versions 1.4.1 dated 2021-08-18 and 1.4.2 dated 2024-07-22
websocket-1.4.1/websocket/man/figures/websocket_logo.svg |only websocket-1.4.2/websocket/DESCRIPTION | 20 websocket-1.4.2/websocket/MD5 | 28 websocket-1.4.2/websocket/NEWS.md | 6 websocket-1.4.2/websocket/README.md | 4 websocket-1.4.2/websocket/build/vignette.rds |binary websocket-1.4.2/websocket/cleanup | 2 websocket-1.4.2/websocket/inst/doc/overview.R | 10 websocket-1.4.2/websocket/inst/doc/overview.html | 325 ++++++---- websocket-1.4.2/websocket/man/figures/logo.svg |only websocket-1.4.2/websocket/src/Makevars.in | 3 websocket-1.4.2/websocket/src/Makevars.win | 2 websocket-1.4.2/websocket/src/cpp11.cpp | 14 websocket-1.4.2/websocket/src/lib/websocketpp/endpoint.hpp | 2 websocket-1.4.2/websocket/src/lib/websocketpp/logger/basic.hpp | 14 websocket-1.4.2/websocket/src/websocket.cpp | 2 16 files changed, 246 insertions(+), 186 deletions(-)
Title: Wrapper for 'SUNDIALS' Solving ODE and Sensitivity Problem
Description: Wrapper for widely used 'SUNDIALS' software (SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers) and more precisely to its 'CVODES' solver. It is aiming to solve ordinary differential equations (ODE) and optionally pending forward sensitivity problem. The wrapper is made 'R' friendly by allowing to pass custom parameters to user's callback functions. Such functions can be both written in 'R' and in 'C++' ('RcppArmadillo' flavor). In case of 'C++', performance is greatly improved so this option is highly advisable when performance matters. If provided, Jacobian matrix can be calculated either in dense or sparse format. In the latter case 'rmumps' package is used to solve corresponding linear systems. Root finding and pending event management are optional and can be specified as 'R' or 'C++' functions too. This makes them a very flexible tool for controlling the ODE system during the time course simulation. 'SUNDIALS' library was published in Hindmarsh et al. (2005) <doi:1 [...truncated...]
Author: Serguei Sokol [cre, aut],
Carol S. Woodward [ctb],
Daniel R. Reynolds [ctb],
Alan C. Hindmarsh [ctb],
David J. Gardner [ctb],
Cody J. Balos [ctb],
Radu Serban [ctb],
Scott D. Cohen [ctb],
Peter N. Brown [ctb],
George Byrne [ctb],
Allan G. Taylor [ctb [...truncated...]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between r2sundials versions 6.5.0-4 dated 2023-12-08 and 6.5.0-5 dated 2024-07-22
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 7 +++++++ build/partial.rdb |binary cleanup | 2 +- inst/include/r2sundials.h | 2 +- inst/unitTests/runit.r2cvodes.R | 2 +- src/r2sundials.cpp | 6 +++--- 8 files changed, 24 insertions(+), 17 deletions(-)
Title: Efficiently Impute Large Scale Incomplete Matrix
Description: Efficiently impute large scale matrix with missing values via its unbiased low-rank matrix approximation. Our main approach is Hard-Impute algorithm proposed in <https://www.jmlr.org/papers/v11/mazumder10a.html>, which achieves highly computational advantage by truncated singular-value decomposition.
Author: Zhe Gao [aut, cre],
Jin Zhu [aut],
Junxian Zhu [aut],
Xueqin Wang [aut],
Yixuan Qiu [cph],
Gael Guennebaud [cph, ctb],
Jitse Niesen [cph, ctb],
Ray Gardner [ctb]
Maintainer: Zhe Gao <gaozh8@mail.ustc.edu.cn>
Diff between eimpute versions 0.2.3 dated 2024-02-18 and 0.2.4 dated 2024-07-22
DESCRIPTION | 14 +++---- MD5 | 19 +++++---- NEWS.md | 8 +--- R/r.search.R | 6 +-- build/vignette.rds |binary inst/doc/eimpute.R | 6 +-- inst/doc/eimpute.html | 48 ++++++++++++------------ inst/include/Spectra/MatOp/internal/ArnoldiOp.h | 2 - src/Makevars | 7 --- src/Makevars.win | 7 --- vignettes/toyex.png |only 11 files changed, 49 insertions(+), 68 deletions(-)
Title: Download, Wrangle, and Analyse Vessel Monitoring System Data
Description: Allows to download, clean and analyse raw Vessel Monitoring System, VMS, data from
Mexican government. You can use the vms_download() function to
download raw data, or you can use the sample_dataset provided within
the package. You can follow the tutorial in the vignette available at
<https://cbmc-gcmp.github.io/dafishr/index.html>.
Author: Fabio Favoretto [aut, cre] ,
Eduardo Leon Solorzano [ctb]
Maintainer: Fabio Favoretto <fabio@gocmarineprogram.org>
Diff between dafishr versions 1.0.0 dated 2022-12-06 and 1.0.1 dated 2024-07-22
DESCRIPTION | 13 +++++------ MD5 | 16 +++++++------- R/all_mpas.R | 2 - R/remote_mpas.R | 2 - README.md | 8 +++++-- build/vignette.rds |binary inst/doc/dafisr.html | 56 +++++++++++++++++++++++++-------------------------- man/all_mpas.Rd | 2 - man/remote_mpas.Rd | 2 - 9 files changed, 52 insertions(+), 49 deletions(-)
Title: Tidy Model Stacking
Description: Model stacking is an ensemble technique that involves
training a model to combine the outputs of many diverse statistical
models, and has been shown to improve predictive performance in a
variety of settings. 'stacks' implements a grammar for
'tidymodels'-aligned model stacking.
Author: Simon Couch [aut, cre],
Max Kuhn [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between stacks versions 1.0.4 dated 2024-03-21 and 1.0.5 dated 2024-07-22
DESCRIPTION | 6 ++-- MD5 | 20 +++++++-------- NEWS.md | 7 +++++ R/blend_predictions.R | 5 +++ R/butcher.R | 3 +- R/collect_parameters.R | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/basics.html | 54 +++++++++++++++++++++---------------------- inst/doc/classification.html | 10 +++---- man/axe_model_stack.Rd | 2 - 11 files changed, 61 insertions(+), 48 deletions(-)
Title: Bayesian Recurrent Events Analysis
Description: Functions to produce MCMC samples for posterior inference in semiparametric Bayesian discrete time competing risks recurrent events models and multistate models.
Author: Adam J King
Maintainer: Adam J King <king@cpp.edu>
Diff between brea versions 0.3.0 dated 2024-07-02 and 0.3.1 dated 2024-07-22
DESCRIPTION | 10 ++++++---- MD5 | 8 +++++++- build |only inst |only vignettes |only 5 files changed, 13 insertions(+), 5 deletions(-)
Title: Bayesian Estimation of Multivariate Threshold Autoregressive
Models
Description: Estimation, inference and forecasting using the Bayesian approach for multivariate threshold autoregressive (TAR) models in which the distribution used to describe the noise process belongs to the class of Gaussian variance mixtures.
Author: Luis Hernando Vanegas [aut, cre],
Sergio Alejandro Calderon [aut],
Luz Marina Rondon [aut]
Maintainer: Luis Hernando Vanegas <lhvanegasp@unal.edu.co>
Diff between mtarm versions 0.1.1 dated 2024-06-04 and 0.1.2 dated 2024-07-22
DESCRIPTION | 6 ++-- MD5 | 8 ++--- NAMESPACE | 1 R/mtar.R | 71 ++++++++++++++++++++++++++++++++++++++++------------ data/riverflows.rda |binary 5 files changed, 63 insertions(+), 23 deletions(-)
Title: Toolkit for Weighting and Analysis of Nonequivalent Groups
Description: Provides functions for propensity score
estimating and weighting, nonresponse weighting, and diagnosis
of the weights.
Author: Matthew Cefalu, Greg Ridgeway, Dan McCaffrey, Andrew Morral, Beth Ann Griffin, and Lane Burgette
Maintainer: Lane Burgette <burgette@rand.org>
Diff between twang versions 2.6 dated 2023-12-05 and 2.6.1 dated 2024-07-22
DESCRIPTION | 10 - MD5 | 26 ++-- R/bal.stat.fast.R | 227 ++++++++++++++++++++--------------------- R/iptw.R | 23 ++-- R/mnps.R | 22 ++-- R/mnps.fast.R | 288 ++++++++++++++++++++++++++--------------------------- R/ps.R | 23 ++-- build/vignette.rds |binary inst/doc/iptw.pdf |binary inst/doc/mnps.pdf |binary inst/doc/twang.pdf |binary man/iptw.Rd | 21 ++- man/mnps.Rd | 22 ++-- man/ps.Rd | 23 ++-- 14 files changed, 347 insertions(+), 338 deletions(-)
Title: Machine Learning in R - Next Generation
Description: Efficient, object-oriented programming on the
building blocks of machine learning. Provides 'R6' objects for tasks,
learners, resamplings, and measures. The package is geared towards
scalability and larger datasets by supporting parallelization and
out-of-memory data-backends like databases. While 'mlr3' focuses on
the core computational operations, add-on packages provide additional
functionality.
Author: Michel Lang [aut] ,
Bernd Bischl [aut] ,
Jakob Richter [aut] ,
Patrick Schratz [aut] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [aut],
Florian Pfisterer [aut] ,
Raphael Sonabend [aut] ,
Lennart Schneider [ctb] , [...truncated...]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3 versions 0.20.0 dated 2024-06-28 and 0.20.1 dated 2024-07-22
DESCRIPTION | 10 +-- MD5 | 84 ++++++++++++++++---------------- NEWS.md | 4 + R/Learner.R | 2 R/MeasureSimple.R | 8 +-- R/set_validate.R | 2 R/worker.R | 3 + README.md | 8 +-- man/Learner.Rd | 2 man/mlr_measures_classif.acc.Rd | 3 - man/mlr_measures_classif.auc.Rd | 1 man/mlr_measures_classif.bacc.Rd | 3 - man/mlr_measures_classif.bbrier.Rd | 1 man/mlr_measures_classif.ce.Rd | 3 - man/mlr_measures_classif.costs.Rd | 3 - man/mlr_measures_classif.dor.Rd | 1 man/mlr_measures_classif.fbeta.Rd | 1 man/mlr_measures_classif.fdr.Rd | 1 man/mlr_measures_classif.fn.Rd | 1 man/mlr_measures_classif.fnr.Rd | 1 man/mlr_measures_classif.fomr.Rd | 1 man/mlr_measures_classif.fp.Rd | 1 man/mlr_measures_classif.fpr.Rd | 1 man/mlr_measures_classif.logloss.Rd | 3 - man/mlr_measures_classif.mauc_au1p.Rd | 3 - man/mlr_measures_classif.mauc_au1u.Rd | 3 - man/mlr_measures_classif.mauc_aunp.Rd | 3 - man/mlr_measures_classif.mauc_aunu.Rd | 3 - man/mlr_measures_classif.mbrier.Rd | 3 - man/mlr_measures_classif.mcc.Rd | 63 ++++++++++++------------ man/mlr_measures_classif.npv.Rd | 1 man/mlr_measures_classif.ppv.Rd | 1 man/mlr_measures_classif.prauc.Rd | 1 man/mlr_measures_classif.precision.Rd | 1 man/mlr_measures_classif.recall.Rd | 1 man/mlr_measures_classif.sensitivity.Rd | 1 man/mlr_measures_classif.specificity.Rd | 1 man/mlr_measures_classif.tn.Rd | 1 man/mlr_measures_classif.tnr.Rd | 1 man/mlr_measures_classif.tp.Rd | 1 man/mlr_measures_classif.tpr.Rd | 1 man/mlr_sugar.Rd | 2 tests/testthat/test_Learner.R | 7 ++ 43 files changed, 126 insertions(+), 120 deletions(-)
Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions.
Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc.
Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM)
for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates).
A group of functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc.
Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of larg [...truncated...]
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrMisc versions 1.15.0.3 dated 2024-05-10 and 1.15.1 dated 2024-07-22
DESCRIPTION | 8 - MD5 | 30 +++---- NAMESPACE | 1 R/asSepList.R | 21 ++--- R/makeNRedMatr.R | 66 ++++++++++------ R/rmOrphans.R |only R/summarizeCols.R | 144 ++++++++++++++++++++++++----------- build/vignette.rds |binary inst/doc/wrMiscVignette1.R | 27 ++++++ inst/doc/wrMiscVignette1.Rmd | 48 +++++++++++ inst/doc/wrMiscVignette1.html | 171 ++++++++++++++++++++++++++++++------------ man/dot-sortMid.Rd | 3 man/dot-summarizeCols.Rd | 23 ++++- man/makeNRedMatr.Rd | 24 ++++- man/rmOrphans.Rd |only man/summarizeCols.Rd | 22 +++-- vignettes/wrMiscVignette1.Rmd | 48 +++++++++++ 17 files changed, 475 insertions(+), 161 deletions(-)
Title: Pathways Longitudinal and Differential Analysis in Metabolomics
Description: Perform a differential analysis at pathway level based on metabolite quantifications and information on pathway metabolite composition.
The method is based on a Principal Component Analysis step and on a linear mixed model.
Automatic query of metabolic pathways is also implemented.
Author: Camille Guilmineau [aut, cre],
Remi Servien [aut] ,
Nathalie Vialaneix [aut]
Maintainer: Camille Guilmineau <camille.guilmineau@inrae.fr>
Diff between phoenics versions 0.2 dated 2024-06-27 and 0.3 dated 2024-07-22
DESCRIPTION | 8 MD5 | 6 NEWS.md | 14 + inst/adddata/ASICS_library_codes.txt | 407 ++++++++++++++++++----------------- 4 files changed, 236 insertions(+), 199 deletions(-)
Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in
a tidy workflow. 'landscapemetrics' reimplements the most common metrics from
'FRAGSTATS' (<https://www.fragstats.org/>) and new ones from the current
literature on landscape metrics. This package supports 'terra' SpatRaster objects
as input arguments. It further provides utility functions to visualize patches,
select metrics and building blocks to develop new metrics.
Author: Maximilian H.K. Hesselbarth [aut, cre]
,
Marco Sciaini [aut] ,
Jakub Nowosad [aut] ,
Sebastian Hanss [aut] ,
Laura J. Graham [ctb] ,
Jeffrey Hollister [ctb] ,
Kimberly A. With [ctb] ,
Florian Prive [ctb] function),
Project Nayuki [ctb] ,
Matt Strima [...truncated...]
Maintainer: Maximilian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between landscapemetrics versions 2.1.3 dated 2024-06-26 and 2.1.4 dated 2024-07-22
DESCRIPTION | 8 MD5 | 20 NAMESPACE | 1 NEWS.md | 586 +++++++------ R/RcppExports.R | 218 ++--- R/landscape_as_list.R | 14 build/vignette.rds |binary inst/doc/get_started.R | 198 ++-- inst/doc/get_started.html | 1344 ++++++++++++++++---------------- man/landscape_as_list.Rd | 3 tests/testthat/test-landscape_as_list.R | 1 11 files changed, 1208 insertions(+), 1185 deletions(-)
More information about landscapemetrics at CRAN
Permanent link
Title: Extending 'mlr3' to Functional Data Analysis
Description: Extends the 'mlr3' ecosystem to functional analysis by adding
support for irregular and regular functional data as defined in the
'tf' package. The package provides 'PipeOps' for preprocessing
functional columns and for extracting scalar features, thereby
allowing standard machine learning algorithms to be applied
afterwards. Available operations include simple functional features
such as the mean or maximum, smoothing, interpolation, flattening, and
functional 'PCA'.
Author: Sebastian Fischer [aut, cre] ,
Maximilian Muecke [aut] ,
Fabian Scheipl [ctb] ,
Bernd Bischl [ctb]
Maintainer: Sebastian Fischer <sebf.fischer@gmail.com>
Diff between mlr3fda versions 0.1.2 dated 2024-05-30 and 0.2.0 dated 2024-07-22
mlr3fda-0.1.2/mlr3fda/tests/testhat |only mlr3fda-0.1.2/mlr3fda/tests/testthat/helper_mlr3pipelines.R |only mlr3fda-0.2.0/mlr3fda/DESCRIPTION | 42 +++-- mlr3fda-0.2.0/mlr3fda/MD5 | 73 +++++----- mlr3fda-0.2.0/mlr3fda/NAMESPACE | 2 mlr3fda-0.2.0/mlr3fda/NEWS.md | 8 - mlr3fda-0.2.0/mlr3fda/R/PipeOpFDACor.R |only mlr3fda-0.2.0/mlr3fda/R/PipeOpFDAExtract.R | 10 - mlr3fda-0.2.0/mlr3fda/R/PipeOpFDAFlatten.R | 8 - mlr3fda-0.2.0/mlr3fda/R/PipeOpFDAInterpol.R | 12 - mlr3fda-0.2.0/mlr3fda/R/PipeOpFDAScaleRange.R |only mlr3fda-0.2.0/mlr3fda/R/PipeOpFDASmooth.R | 23 +-- mlr3fda-0.2.0/mlr3fda/R/PipeOpFPCA.R | 24 ++- mlr3fda-0.2.0/mlr3fda/R/TaskClassif_phoneme.R | 2 mlr3fda-0.2.0/mlr3fda/R/TaskRegr_dti.R | 2 mlr3fda-0.2.0/mlr3fda/R/TaskRegr_fuel.R | 2 mlr3fda-0.2.0/mlr3fda/R/zzz.R | 6 mlr3fda-0.2.0/mlr3fda/README.md | 18 +- mlr3fda-0.2.0/mlr3fda/build/partial.rdb |binary mlr3fda-0.2.0/mlr3fda/man/mlr3fda-package.Rd | 4 mlr3fda-0.2.0/mlr3fda/man/mlr_pipeops_fda.cor.Rd |only mlr3fda-0.2.0/mlr3fda/man/mlr_pipeops_fda.extract.Rd | 6 mlr3fda-0.2.0/mlr3fda/man/mlr_pipeops_fda.flatten.Rd | 4 mlr3fda-0.2.0/mlr3fda/man/mlr_pipeops_fda.fpca.Rd | 7 mlr3fda-0.2.0/mlr3fda/man/mlr_pipeops_fda.interpol.Rd | 8 - mlr3fda-0.2.0/mlr3fda/man/mlr_pipeops_fda.scalerange.Rd |only mlr3fda-0.2.0/mlr3fda/man/mlr_pipeops_fda.smooth.Rd | 14 - mlr3fda-0.2.0/mlr3fda/man/mlr_tasks_dti.Rd | 9 - mlr3fda-0.2.0/mlr3fda/man/mlr_tasks_fuel.Rd | 9 - mlr3fda-0.2.0/mlr3fda/man/mlr_tasks_phoneme.Rd | 9 - mlr3fda-0.2.0/mlr3fda/tests/testthat/helper.R | 5 mlr3fda-0.2.0/mlr3fda/tests/testthat/test_PipeOpCor.R |only mlr3fda-0.2.0/mlr3fda/tests/testthat/test_PipeOpFDAExtract.R | 58 +++---- mlr3fda-0.2.0/mlr3fda/tests/testthat/test_PipeOpFDAFlatten.R | 2 mlr3fda-0.2.0/mlr3fda/tests/testthat/test_PipeOpFDAInterpolate.R | 12 + mlr3fda-0.2.0/mlr3fda/tests/testthat/test_PipeOpFDASmooth.R | 13 + mlr3fda-0.2.0/mlr3fda/tests/testthat/test_PipeOpFPCA.R | 38 ++--- mlr3fda-0.2.0/mlr3fda/tests/testthat/test_PipeOpScaleRange.R |only mlr3fda-0.2.0/mlr3fda/tests/testthat/test_TaskClassif_phoneme.R |only mlr3fda-0.2.0/mlr3fda/tests/testthat/test_TaskRegr_dti.R | 2 mlr3fda-0.2.0/mlr3fda/tests/testthat/test_hash_input.R | 4 mlr3fda-0.2.0/mlr3fda/tests/testthat/test_tf.R | 4 42 files changed, 227 insertions(+), 213 deletions(-)
Title: Sensitivity Analysis Tools for Regression Models
Description: Implements a suite of sensitivity analysis tools
that extends the traditional omitted variable bias framework and makes it easier
to understand the impact of omitted variables in regression models, as discussed in Cinelli, C. and Hazlett, C. (2020), "Making Sense of Sensitivity: Extending Omitted Variable Bias." Journal of the Royal Statistical Society, Series B (Statistical Methodology) <doi:10.1111/rssb.12348>.
Author: Carlos Cinelli [aut, cre],
Jeremy Ferwerda [aut],
Chad Hazlett [aut],
Danielle Tsao [ctb],
Aaron Rudkin [ctb],
Grigorij Ljubownikow [ctb]
Maintainer: Carlos Cinelli <carloscinelli@hotmail.com>
Diff between sensemakr versions 0.1.4 dated 2021-10-08 and 0.1.6 dated 2024-07-22
sensemakr-0.1.4/sensemakr/vignettes/darfur_dag.png |only sensemakr-0.1.6/sensemakr/DESCRIPTION | 20 sensemakr-0.1.6/sensemakr/MD5 | 90 - sensemakr-0.1.6/sensemakr/NAMESPACE | 35 sensemakr-0.1.6/sensemakr/R/bias_functions.R | 285 +++ sensemakr-0.1.6/sensemakr/R/data.R | 1 sensemakr-0.1.6/sensemakr/R/other.R | 1 sensemakr-0.1.6/sensemakr/R/ovb_bounds.R | 205 ++ sensemakr-0.1.6/sensemakr/R/ovb_plots.R | 375 ++++ sensemakr-0.1.6/sensemakr/R/print.R | 2 sensemakr-0.1.6/sensemakr/R/sensemakr.R | 213 ++ sensemakr-0.1.6/sensemakr/R/sensitivity_stats.R | 499 +++++ sensemakr-0.1.6/sensemakr/build/vignette.rds |binary sensemakr-0.1.6/sensemakr/inst/doc/informal_benchmarking.R | 12 sensemakr-0.1.6/sensemakr/inst/doc/informal_benchmarking.html | 598 +++++-- sensemakr-0.1.6/sensemakr/inst/doc/sensemakr.R | 16 sensemakr-0.1.6/sensemakr/inst/doc/sensemakr.html | 834 +++++++--- sensemakr-0.1.6/sensemakr/man/add_bound_to_contour.Rd | 34 sensemakr-0.1.6/sensemakr/man/adjusted_critical_value.Rd |only sensemakr-0.1.6/sensemakr/man/adjusted_estimate.Rd | 100 + sensemakr-0.1.6/sensemakr/man/darfur.Rd | 2 sensemakr-0.1.6/sensemakr/man/figures/figures-basic-usage-2.png |binary sensemakr-0.1.6/sensemakr/man/figures/figures-basic-usage-3.png |binary sensemakr-0.1.6/sensemakr/man/figures/figures-basic-usage-4.png |only sensemakr-0.1.6/sensemakr/man/group_partial_r2.Rd | 9 sensemakr-0.1.6/sensemakr/man/model_helper.Rd | 1 sensemakr-0.1.6/sensemakr/man/ovb_bounds.Rd | 53 sensemakr-0.1.6/sensemakr/man/ovb_contour_plot.Rd | 70 sensemakr-0.1.6/sensemakr/man/ovb_extreme_plot.Rd | 39 sensemakr-0.1.6/sensemakr/man/partial_r2.Rd | 26 sensemakr-0.1.6/sensemakr/man/resid_maker.Rd | 1 sensemakr-0.1.6/sensemakr/man/robustness_value.Rd | 107 + sensemakr-0.1.6/sensemakr/man/sensemakr-package.Rd | 2 sensemakr-0.1.6/sensemakr/man/sensemakr.Rd | 46 sensemakr-0.1.6/sensemakr/man/sensitivity_stats.Rd | 39 sensemakr-0.1.6/sensemakr/tests/testthat/Rplots.pdf |binary sensemakr-0.1.6/sensemakr/tests/testthat/test-01-manual-tests.R | 18 sensemakr-0.1.6/sensemakr/tests/testthat/test-02-darfur.R | 30 sensemakr-0.1.6/sensemakr/tests/testthat/test-03-contour.R | 2 sensemakr-0.1.6/sensemakr/tests/testthat/test-05-robustness_value.R | 41 sensemakr-0.1.6/sensemakr/tests/testthat/test-07-bounds.R | 2 sensemakr-0.1.6/sensemakr/tests/testthat/test-10-rv-xrv.R | 148 + sensemakr-0.1.6/sensemakr/tests/testthat/test-12-reduce-fixest.R |only sensemakr-0.1.6/sensemakr/tests/testthat/test-13-darfur-fixest.R |only sensemakr-0.1.6/sensemakr/tests/testthat/test-14-contour-fixest.R |only sensemakr-0.1.6/sensemakr/tests/testthat/test-15-extreme_fixest.R |only sensemakr-0.1.6/sensemakr/tests/testthat/test-16-robustness_value-fixest.R |only sensemakr-0.1.6/sensemakr/tests/testthat/test-17-misc-fixest.R |only sensemakr-0.1.6/sensemakr/tests/testthat/test-18-bounds-fixest.R |only sensemakr-0.1.6/sensemakr/tests/testthat/test-19-bias_functions-fixest.R |only sensemakr-0.1.6/sensemakr/tests/testthat/test-20-plots-fixest.R |only sensemakr-0.1.6/sensemakr/tests/testthat/test-21-print-fixest.R |only sensemakr-0.1.6/sensemakr/tests/testthat/test-22-t-dagger.R |only 53 files changed, 3279 insertions(+), 677 deletions(-)
Title: Cryptographic Hash, Extendable-Output and Base64 Functions
Description: Fast and memory-efficient streaming hash functions and base64
encoding and decoding. Performs direct hashing of strings and raw vectors.
Stream hashes files potentially larger than memory, as well as in-memory
objects through R's serialization mechanism. Implementations include the
SHA-256, SHA-3 and 'Keccak' cryptographic hash functions, SHAKE256
extendable-output function (XOF), and 'SipHash' pseudo-random function.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between secretbase versions 1.0.0 dated 2024-06-16 and 1.0.1 dated 2024-07-22
DESCRIPTION | 8 ++-- MD5 | 20 +++++----- NEWS.md | 4 ++ README.md | 105 ++++++++++++++++++++++++++++-------------------------- build/partial.rdb |binary src/base.c | 72 +++++++++++++++++++------------------ src/secret.c | 43 +++++++++++++--------- src/secret.h | 17 +++++++- src/secret2.c | 24 ++++++------ src/secret3.c | 18 ++++----- tests/tests.R | 13 ++++-- 11 files changed, 184 insertions(+), 140 deletions(-)
Title: Propensity Score Matching for Unordered 3-Group Data
Description: You can use this program for 3 sets of categorical data for propensity score matching.
Assume that the data has 3 different categorical variables. You can use it to perform propensity matching of baseline indicator groupings.
The matching will make the differences in the baseline data smaller.
This method was described by Alvaro Fuentes (2022) <doi:10.1080/00273171.2021.1925521>.
Author: Qiang LIU [aut, cre]
Maintainer: Qiang LIU <dege857@163.com>
Diff between pm3 versions 0.1.9 dated 2023-06-17 and 0.2.0 dated 2024-07-22
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/datach.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Analyze and Create Elegant Directed Acyclic Graphs
Description: Tidy, analyze, and plot directed acyclic graphs (DAGs).
'ggdag' is built on top of 'dagitty', an R package that uses the
'DAGitty' web tool (<https://dagitty.net/>) for creating and analyzing
DAGs. 'ggdag' makes it easy to tidy and plot 'dagitty' objects using
'ggplot2' and 'ggraph', as well as common analytic and graphical
functions, such as determining adjustment sets and node relationships.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between ggdag versions 0.2.12 dated 2024-03-08 and 0.2.13 dated 2024-07-22
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 2 ++ R/tidy_dag.R | 9 +++++---- R/utils.R | 8 ++++++++ inst/doc/bias-structures.html | 4 ++-- inst/doc/intro-to-dags.Rmd | 2 +- inst/doc/intro-to-dags.html | 6 +++--- inst/doc/intro-to-ggdag.html | 31 +++++-------------------------- tests/testthat/test-tidy_dag.R | 5 +++++ vignettes/intro-to-dags.Rmd | 2 +- 11 files changed, 45 insertions(+), 50 deletions(-)
Title: Framework for Easy Statistical Modeling, Visualization, and
Reporting
Description: A meta-package that installs and loads a set of packages from
'easystats' ecosystem in a single step. This collection of packages provide
a unifying and consistent framework for statistical modeling, visualization,
and reporting. Additionally, it provides articles targeted at instructors for
teaching 'easystats', and a dashboard targeted at new R users for easily
conducting statistical analysis by accessing summary results, model fit indices,
and visualizations with minimal programming.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Brenton M. Wiernik [aut] ,
Etienne Bacher [aut] ,
Remi Theriault [aut]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between easystats versions 0.7.2 dated 2024-06-06 and 0.7.3 dated 2024-07-22
easystats-0.7.2/easystats/man/figures/unnamed-chunk-8-1.png |only easystats-0.7.3/easystats/DESCRIPTION | 37 easystats-0.7.3/easystats/MD5 | 50 - easystats-0.7.3/easystats/NAMESPACE | 1 easystats-0.7.3/easystats/NEWS.md | 15 easystats-0.7.3/easystats/R/easystats_update.R | 28 easystats-0.7.3/easystats/R/install_easystats.R | 2 easystats-0.7.3/easystats/R/install_suggested.R | 65 - easystats-0.7.3/easystats/R/utils.R | 87 -- easystats-0.7.3/easystats/R/zzz.R | 2 easystats-0.7.3/easystats/README.md | 24 easystats-0.7.3/easystats/build/vignette.rds |binary easystats-0.7.3/easystats/inst/CITATION | 3 easystats-0.7.3/easystats/inst/WORDLIST | 6 easystats-0.7.3/easystats/inst/doc/citation.Rmd | 4 easystats-0.7.3/easystats/inst/doc/list_of_functions.R | 4 easystats-0.7.3/easystats/inst/doc/list_of_functions.Rmd | 4 easystats-0.7.3/easystats/inst/doc/list_of_functions.html | 4 easystats-0.7.3/easystats/inst/doc/workflow_performance.html | 428 +++++------ easystats-0.7.3/easystats/inst/templates/easydashboard.Rmd | 16 easystats-0.7.3/easystats/man/easystats_packages.Rd |only easystats-0.7.3/easystats/man/figures/depnetwork-1.png |binary easystats-0.7.3/easystats/man/figures/logo_wall.png |binary easystats-0.7.3/easystats/man/figures/unnamed-chunk-7-1.png |binary easystats-0.7.3/easystats/man/install_suggested.Rd | 3 easystats-0.7.3/easystats/vignettes/citation.Rmd | 4 easystats-0.7.3/easystats/vignettes/list_of_functions.Rmd | 4 27 files changed, 368 insertions(+), 423 deletions(-)
Title: Non-Negative Matrix Factorization for Single-Cell Omics
Description: A collection of methods to extract gene programs from single-cell gene expression data using non-negative matrix factorization (NMF). 'GeneNMF' contains functions to directly interact with the 'Seurat' toolkit and derive interpretable gene program signatures.
Author: Massimo Andreatta [aut, cre] ,
Santiago Carmona [aut]
Maintainer: Massimo Andreatta <massimo.andreatta@unil.ch>
Diff between GeneNMF versions 0.4.0 dated 2024-02-29 and 0.6.0 dated 2024-07-22
DESCRIPTION | 14 +- MD5 | 37 +++--- NAMESPACE | 9 + R/main.R | 276 +++++++++++++++++++++++++++++++++++------------ R/utils.R | 169 +++++++++++++++++++++++----- README.md | 54 ++++++++- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 10 + inst/doc/make.index.Rmd | 4 inst/doc/make.index.html | 9 + man/getDataMatrix.Rd | 10 + man/getMetaPrograms.Rd | 31 +++-- man/getNMFgenes.Rd | 19 ++- man/multiNMF.Rd | 7 - man/multiPCA.Rd |only man/plotMetaPrograms.Rd | 10 - man/runGSEA.Rd | 13 +- man/runNMF.Rd | 7 - vignettes/make.index.Rmd | 4 20 files changed, 514 insertions(+), 169 deletions(-)
Title: Many Ways to Make, Modify, Map, Mark, and Measure Myriad
Networks
Description: Many tools for making, modifying, mapping, marking, measuring,
and motifs and memberships of many different types of networks.
All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
The package includes functions for importing and exporting, creating and generating networks,
modifying networks and node and tie attributes,
and describing and visualizing networks with sensible defaults.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manynet versions 1.0.1 dated 2024-07-17 and 1.0.2 dated 2024-07-22
DESCRIPTION | 13 MD5 | 41 NEWS.md | 70 + R/reexports_classes.R | 2 README.md | 164 ++- build/partial.rdb |binary inst/tutorials/tutorial0/tutorial0.Rmd | 257 +++-- inst/tutorials/tutorial0/tutorial0.html |only inst/tutorials/tutorial1/data.Rmd | 330 +++++-- inst/tutorials/tutorial1/data.html | 1197 ++++++++++++++++++------- inst/tutorials/tutorial2/visualisation.Rmd | 433 ++++++--- inst/tutorials/tutorial2/visualisation.html | 1298 ++++++++++++++++++++++------ inst/tutorials/tutorial3/centrality.Rmd | 150 ++- inst/tutorials/tutorial3/centrality.html | 510 ++++++++--- inst/tutorials/tutorial4/community.Rmd | 77 - inst/tutorials/tutorial4/community.html | 645 ++++++------- inst/tutorials/tutorial5/position.Rmd | 29 inst/tutorials/tutorial5/position.html | 262 ++--- inst/tutorials/tutorial6/topology.Rmd | 33 inst/tutorials/tutorial6/topology.html | 330 +++---- inst/tutorials/tutorial7/diffusion.Rmd | 22 inst/tutorials/tutorial7/diffusion.html | 152 +-- 22 files changed, 4048 insertions(+), 1967 deletions(-)
Title: Fit Dynamic Structural Equation Models
Description: Applies dynamic structural equation models to time-series data
with generic and simplified specification for simultaneous and lagged
effects. Methods are described in Thorson et al. (2024)
"Dynamic structural equation models synthesize ecosystem dynamics
constrained by ecological mechanisms."
Author: James Thorson [aut, cre]
Maintainer: James Thorson <James.Thorson@noaa.gov>
Diff between dsem versions 1.2.1 dated 2024-04-02 and 1.3.0 dated 2024-07-22
DESCRIPTION | 10 ++-- MD5 | 22 ++++----- NEWS.md | 6 ++ R/dsem.R | 30 ++++++++++++- README.md | 1 build/vignette.rds |binary inst/doc/dynamic_factor_analysis.html | 36 +++++++--------- inst/doc/vignette.html | 20 ++++----- man/as_fitted_DAG.Rd | 7 ++- man/dsem_control.Rd | 16 +++++++ src/dsem.cpp | 61 ++++++++++++++++++++++++++- tests/testthat/test-gmrf-versions.R | 75 ++++++++++++++++++++++++++++++++++ 12 files changed, 232 insertions(+), 52 deletions(-)
Title: UK Biobank COVID-19 Data Processing and Risk Factor Association
Tests
Description: Process UK Biobank COVID-19 test result data for susceptibility, severity and mortality analyses, perform potential non-genetic COVID-19 risk factor and co-morbidity association tests. Wang et al. (2021) <doi:10.5281/zenodo.5174381>.
Author: Longfei Wang [aut, cre]
Maintainer: Longfei Wang <wang.lo@wehi.edu.au>
Diff between UKB.COVID19 versions 0.1.4 dated 2024-01-24 and 0.1.5 dated 2024-07-22
DESCRIPTION | 13 +++++++------ MD5 | 9 +++++++-- NEWS.md | 12 ++++++++++++ build |only inst/doc |only vignettes |only 6 files changed, 26 insertions(+), 8 deletions(-)
Title: Network Analysis and Causal Inference Through Structural
Equation Modeling
Description: Estimate networks and causal relationships in complex systems through
Structural Equation Modeling. This package also includes functions to import,
weight, manipulate, and fit biological network models within the
Structural Equation Modeling framework proposed in
Grassi M, Palluzzi F, Tarantino B (2022) <doi:10.1093/bioinformatics/btac567>.
Author: Mario Grassi [aut],
Fernando Palluzzi [aut],
Barbara Tarantino [aut, cre]
Maintainer: Barbara Tarantino <barbara.tarantino01@universitadipavia.it>
Diff between SEMgraph versions 1.2.1 dated 2024-02-06 and 1.2.2 dated 2024-07-22
SEMgraph-1.2.1/SEMgraph/man/predictSink.Rd |only SEMgraph-1.2.2/SEMgraph/DESCRIPTION | 8 SEMgraph-1.2.2/SEMgraph/MD5 | 45 +-- SEMgraph-1.2.2/SEMgraph/NAMESPACE | 1 SEMgraph-1.2.2/SEMgraph/NEWS.md | 20 + SEMgraph-1.2.2/SEMgraph/R/ALSdata.R | 2 SEMgraph-1.2.2/SEMgraph/R/semCluster.R | 8 SEMgraph-1.2.2/SEMgraph/R/semFit.R | 50 +-- SEMgraph-1.2.2/SEMgraph/R/semLearn.R | 10 SEMgraph-1.2.2/SEMgraph/R/semPaths.R | 2 SEMgraph-1.2.2/SEMgraph/R/semTools.R | 342 ------------------------- SEMgraph-1.2.2/SEMgraph/R/semUtils.R | 4 SEMgraph-1.2.2/SEMgraph/man/SEMrun.Rd | 2 SEMgraph-1.2.2/SEMgraph/man/SEMtree.Rd | 2 SEMgraph-1.2.2/SEMgraph/man/Shipley.test.Rd | 2 SEMgraph-1.2.2/SEMgraph/man/alsData.Rd | 2 SEMgraph-1.2.2/SEMgraph/man/clusterGraph.Rd | 2 SEMgraph-1.2.2/SEMgraph/man/colorGraph.Rd | 2 SEMgraph-1.2.2/SEMgraph/man/cplot.Rd | 4 SEMgraph-1.2.2/SEMgraph/man/extractClusters.Rd | 2 SEMgraph-1.2.2/SEMgraph/man/modelSearch.Rd | 2 SEMgraph-1.2.2/SEMgraph/man/pathFinder.Rd | 2 SEMgraph-1.2.2/SEMgraph/man/resizeGraph.Rd | 2 SEMgraph-1.2.2/SEMgraph/man/transformData.Rd | 25 - 24 files changed, 91 insertions(+), 450 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-17 1.1.5
2022-03-10 1.1.4
2022-01-19 1.1.3
2021-10-06 1.1.2
2021-09-16 1.1.1
2021-06-04 1.1.0
Title: 3D Software Rasterizer
Description: Rasterize images using a 3D software renderer. 3D scenes are created either by importing external files, building scenes out of the included objects, or by constructing meshes manually. Supports point and directional lights, anti-aliased lines, shadow mapping, transparent objects, translucent objects, multiple materials types, reflection, refraction, environment maps, multicore rendering, bloom, tone-mapping, and screen-space ambient occlusion.
Author: Tyler Morgan-Wall [aut, cph, cre]
,
Syoyo Fujita [ctb, cph],
Vilya Harvey [ctb, cph],
G-Truc Creation [ctb, cph],
Sean Barrett [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayvertex versions 0.10.4 dated 2023-12-16 and 0.11.4 dated 2024-07-22
rayvertex-0.10.4/rayvertex/src/earcut.h |only rayvertex-0.10.4/rayvertex/src/stb_image.h |only rayvertex-0.10.4/rayvertex/src/tiny_obj_loader.h |only rayvertex-0.11.4/rayvertex/DESCRIPTION | 13 rayvertex-0.11.4/rayvertex/MD5 | 140 ++++++---- rayvertex-0.11.4/rayvertex/NAMESPACE | 4 rayvertex-0.11.4/rayvertex/R/RcppExports.R | 16 + rayvertex-0.11.4/rayvertex/R/add_plane_uv_mesh.R | 71 ++++- rayvertex-0.11.4/rayvertex/R/add_shape.R | 26 + rayvertex-0.11.4/rayvertex/R/construct_mesh.R | 24 - rayvertex-0.11.4/rayvertex/R/displace_mesh.R |only rayvertex-0.11.4/rayvertex/R/displacement_sphere.R |only rayvertex-0.11.4/rayvertex/R/generate_surface.R |only rayvertex-0.11.4/rayvertex/R/lines.R | 2 rayvertex-0.11.4/rayvertex/R/material_functions.R | 67 +++- rayvertex-0.11.4/rayvertex/R/merge_scene.R | 2 rayvertex-0.11.4/rayvertex/R/objects.R | 64 ++-- rayvertex-0.11.4/rayvertex/R/r_obj.R | 22 + rayvertex-0.11.4/rayvertex/R/rasterize_scene.R | 69 ++-- rayvertex-0.11.4/rayvertex/R/rayvertex_classes.R |only rayvertex-0.11.4/rayvertex/R/readobj.R | 44 ++- rayvertex-0.11.4/rayvertex/R/remove_duplicate_materials.R | 21 - rayvertex-0.11.4/rayvertex/R/scene_from_list.R | 39 +- rayvertex-0.11.4/rayvertex/R/smooth_normals_mesh.R | 22 + rayvertex-0.11.4/rayvertex/R/subdivide_mesh.R |only rayvertex-0.11.4/rayvertex/R/swap_yz.R | 20 + rayvertex-0.11.4/rayvertex/R/transform_mesh_functions.R | 79 ++--- rayvertex-0.11.4/rayvertex/R/util_functions.R | 3 rayvertex-0.11.4/rayvertex/R/validate_mesh.R | 5 rayvertex-0.11.4/rayvertex/R/write_scene_to_obj.R | 8 rayvertex-0.11.4/rayvertex/R/zzz.R | 66 ++++ rayvertex-0.11.4/rayvertex/inst/extdata/3d_r_logo.txt |only rayvertex-0.11.4/rayvertex/inst/extdata/3d_r_logo_mat.txt |only rayvertex-0.11.4/rayvertex/inst/extdata/cube.txt | 4 rayvertex-0.11.4/rayvertex/man/add_plane_uv_mesh.Rd | 6 rayvertex-0.11.4/rayvertex/man/add_sphere_uv_mesh.Rd |only rayvertex-0.11.4/rayvertex/man/cat_color.Rd |only rayvertex-0.11.4/rayvertex/man/change_material.Rd | 14 - rayvertex-0.11.4/rayvertex/man/convert_rgb_to_ansi.Rd |only rayvertex-0.11.4/rayvertex/man/displace_mesh.Rd |only rayvertex-0.11.4/rayvertex/man/displacement_sphere.Rd |only rayvertex-0.11.4/rayvertex/man/format_pillar_shp.Rd |only rayvertex-0.11.4/rayvertex/man/generate_cornell_mesh.Rd | 8 rayvertex-0.11.4/rayvertex/man/generate_line.Rd | 2 rayvertex-0.11.4/rayvertex/man/generate_surface.Rd |only rayvertex-0.11.4/rayvertex/man/get_mesh_center.Rd | 2 rayvertex-0.11.4/rayvertex/man/material_list.Rd | 6 rayvertex-0.11.4/rayvertex/man/mesh3d_mesh.Rd | 15 - rayvertex-0.11.4/rayvertex/man/obj_mesh.Rd | 2 rayvertex-0.11.4/rayvertex/man/pillar_shaft.ray_shape.Rd |only rayvertex-0.11.4/rayvertex/man/pillar_shaft.ray_shape_list.Rd |only rayvertex-0.11.4/rayvertex/man/print.ray_shape.Rd |only rayvertex-0.11.4/rayvertex/man/print.ray_vertex_data.Rd |only rayvertex-0.11.4/rayvertex/man/r_obj.Rd | 18 - rayvertex-0.11.4/rayvertex/man/rasterize_scene.Rd | 5 rayvertex-0.11.4/rayvertex/man/ray_mesh.Rd |only rayvertex-0.11.4/rayvertex/man/ray_shape.Rd |only rayvertex-0.11.4/rayvertex/man/ray_shape_list.Rd |only rayvertex-0.11.4/rayvertex/man/ray_vertex_data.Rd |only rayvertex-0.11.4/rayvertex/man/rotate_mesh.Rd | 14 - rayvertex-0.11.4/rayvertex/man/scale_mesh.Rd | 8 rayvertex-0.11.4/rayvertex/man/scale_unit_mesh.Rd | 10 rayvertex-0.11.4/rayvertex/man/set_material.Rd | 4 rayvertex-0.11.4/rayvertex/man/smooth_normals_mesh.Rd | 4 rayvertex-0.11.4/rayvertex/man/sphere_mesh.Rd | 3 rayvertex-0.11.4/rayvertex/man/subdivide_mesh.Rd |only rayvertex-0.11.4/rayvertex/man/swap_yz.Rd | 17 - rayvertex-0.11.4/rayvertex/man/translate_mesh.Rd | 8 rayvertex-0.11.4/rayvertex/man/vec_ptype_abbr.ray_shape.Rd |only rayvertex-0.11.4/rayvertex/man/vec_ptype_abbr.ray_shape_list.Rd |only rayvertex-0.11.4/rayvertex/man/yz_rect_mesh.Rd | 6 rayvertex-0.11.4/rayvertex/src/RcppExports.cpp | 62 ++++ rayvertex-0.11.4/rayvertex/src/assert.cpp |only rayvertex-0.11.4/rayvertex/src/assert.h |only rayvertex-0.11.4/rayvertex/src/calcnormals.cpp |only rayvertex-0.11.4/rayvertex/src/calcnormals.h |only rayvertex-0.11.4/rayvertex/src/calctangents.cpp |only rayvertex-0.11.4/rayvertex/src/calctangents.h |only rayvertex-0.11.4/rayvertex/src/displacement.cpp |only rayvertex-0.11.4/rayvertex/src/displacement.h |only rayvertex-0.11.4/rayvertex/src/filltri.h | 4 rayvertex-0.11.4/rayvertex/src/load_obj.cpp | 14 - rayvertex-0.11.4/rayvertex/src/loopsubdiv.cpp |only rayvertex-0.11.4/rayvertex/src/loopsubdiv.h |only rayvertex-0.11.4/rayvertex/src/rayraster.cpp | 4 rayvertex-0.11.4/rayvertex/src/shaders.cpp | 55 ++- rayvertex-0.11.4/rayvertex/src/shaders.h | 24 - rayvertex-0.11.4/rayvertex/src/stb |only rayvertex-0.11.4/rayvertex/src/tinyobj |only 89 files changed, 779 insertions(+), 367 deletions(-)
Title: High-Dimensional Robust Factor Analysis
Description: Factor models have been widely applied in areas such as economics and finance, and the well-known heavy-tailedness of macroeconomic/financial data should be taken into account when conducting factor analysis. We propose two algorithms to do robust factor analysis by considering the Huber loss. One is based on minimizing the Huber loss of the idiosyncratic error's L2 norm, which turns out to do Principal Component Analysis (PCA) on the weighted sample covariance matrix and thereby named as Huber PCA. The other one is based on minimizing the element-wise Huber loss, which can be solved by an iterative Huber regression algorithm. In this package we also provide the code for traditional PCA, the Robust Two Step (RTS) method by He et al. (2022) and the Quantile Factor Analysis (QFA) method by Chen et al. (2021) and He et al. (2023).
Author: Yong He [aut],
Lingxiao Li [aut],
Dong Liu [aut, cre],
Wenxin Zhou [aut]
Maintainer: Dong Liu <liudong_stat@163.com>
Diff between HDRFA versions 0.1.4 dated 2023-11-07 and 0.1.5 dated 2024-07-22
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/HPCA.R | 46 +++++++++++++++++++++------------------------- R/IQR.R | 27 +++++++++++---------------- R/Myrlm.R | 4 ++++ R/PCA.R | 4 ++-- R/RTS.R | 2 +- R/function_all.R | 48 ++++++++++++++++++++---------------------------- man/HPCA.Rd | 12 +++++++----- man/HPCA_FN.Rd | 11 +++++++++-- 10 files changed, 87 insertions(+), 91 deletions(-)