Title: Graphs and Tables for OMOP Results
Description: Provides methods to transform omop_result objects into
formatted tables and figures, facilitating the visualization of study
results working with the Observational Medical Outcomes Partnership
(OMOP) Common Data Model.
Author: Marti Catala [aut] ,
Nuria Mercade-Besora [aut, cre]
,
Yuchen Guo [ctb] ,
Elin Rowlands [ctb] ,
Edward Burn [ctb]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between visOmopResults versions 0.5.0 dated 2024-11-24 and 0.5.1 dated 2024-12-10
visOmopResults-0.5.0/visOmopResults/R/helperTableFunctions.R |only visOmopResults-0.5.0/visOmopResults/tests/testthat/test-helperTableFunctions.R |only visOmopResults-0.5.1/visOmopResults/DESCRIPTION | 15 visOmopResults-0.5.1/visOmopResults/MD5 | 67 visOmopResults-0.5.1/visOmopResults/NAMESPACE | 2 visOmopResults-0.5.1/visOmopResults/R/datatableInternal.R |only visOmopResults-0.5.1/visOmopResults/R/formatEstimateName.R | 380 +-- visOmopResults-0.5.1/visOmopResults/R/formatEstimateValue.R | 166 - visOmopResults-0.5.1/visOmopResults/R/formatTable.R | 22 visOmopResults-0.5.1/visOmopResults/R/helperFunctions.R |only visOmopResults-0.5.1/visOmopResults/R/plot.R | 43 visOmopResults-0.5.1/visOmopResults/R/plottingThemes.R | 112 - visOmopResults-0.5.1/visOmopResults/R/reexports.R | 198 - visOmopResults-0.5.1/visOmopResults/R/utilities.R | 453 ++-- visOmopResults-0.5.1/visOmopResults/R/visOmopTable.R | 539 ++--- visOmopResults-0.5.1/visOmopResults/build/vignette.rds |binary visOmopResults-0.5.1/visOmopResults/inst/doc/plots.Rmd | 604 ++--- visOmopResults-0.5.1/visOmopResults/inst/doc/plots.html | 26 visOmopResults-0.5.1/visOmopResults/inst/doc/tables.Rmd | 886 ++++---- visOmopResults-0.5.1/visOmopResults/inst/doc/tables.html | 1078 ++++------ visOmopResults-0.5.1/visOmopResults/man/barPlot.Rd | 20 visOmopResults-0.5.1/visOmopResults/man/formatTable.Rd | 12 visOmopResults-0.5.1/visOmopResults/man/plotColumns.Rd |only visOmopResults-0.5.1/visOmopResults/man/scatterPlot.Rd | 2 visOmopResults-0.5.1/visOmopResults/man/tableColumns.Rd |only visOmopResults-0.5.1/visOmopResults/man/tableOptions.Rd | 2 visOmopResults-0.5.1/visOmopResults/man/tableStyle.Rd | 2 visOmopResults-0.5.1/visOmopResults/man/tableType.Rd | 2 visOmopResults-0.5.1/visOmopResults/man/themeVisOmop.Rd | 2 visOmopResults-0.5.1/visOmopResults/man/visOmopTable.Rd | 27 visOmopResults-0.5.1/visOmopResults/tests/testthat/test-formatEstimateName.R | 912 ++++---- visOmopResults-0.5.1/visOmopResults/tests/testthat/test-formatEstimateValue.R | 630 ++--- visOmopResults-0.5.1/visOmopResults/tests/testthat/test-formatTable.R | 160 + visOmopResults-0.5.1/visOmopResults/tests/testthat/test-helperFunctions.R |only visOmopResults-0.5.1/visOmopResults/tests/testthat/test-plot.R | 26 visOmopResults-0.5.1/visOmopResults/tests/testthat/test-visOmopTable.R | 634 +++-- visOmopResults-0.5.1/visOmopResults/vignettes/plots.Rmd | 604 ++--- visOmopResults-0.5.1/visOmopResults/vignettes/tables.Rmd | 886 ++++---- 38 files changed, 4305 insertions(+), 4207 deletions(-)
More information about visOmopResults at CRAN
Permanent link
Title: Load 'Overture' Datasets as 'dbplyr' and 'sf'-Ready Data Frames
Description: An integrated R interface to the 'Overture' API
(<https://docs.overturemaps.org/>). Allows R users to return 'Overture' data as
'dbplyr' data frames or materialized 'sf' spatial data frames.
Author: Arthur Gailes [aut, cre, cph]
Maintainer: Arthur Gailes <agailes1@gmail.com>
Diff between overtureR versions 0.2.3 dated 2024-09-04 and 0.2.4 dated 2024-12-10
DESCRIPTION | 6 MD5 | 10 - NEWS.md | 54 +++--- R/open_curtain.R | 444 ++++++++++++++++++++++++++-------------------------- R/utils.R | 62 +++---- man/open_curtain.Rd | 2 6 files changed, 296 insertions(+), 282 deletions(-)
Title: Download Geospatial Data Available from Several Federated Data
Sources
Description: Download geospatial data available
from several federated data sources (mainly sources maintained by the
US Federal government). Currently, the package enables extraction from
nine datasets: The National Elevation Dataset digital elevation
models (<https://www.usgs.gov/3d-elevation-program> 1 and 1/3 arc-second;
USGS); The National Hydrography Dataset
(<https://www.usgs.gov/national-hydrography/national-hydrography-dataset>;
USGS); The Soil Survey Geographic (SSURGO) database from the National
Cooperative Soil Survey (<https://websoilsurvey.sc.egov.usda.gov/>; NCSS),
which is led by the Natural Resources
Conservation Service (NRCS) under the USDA;
the Global Historical Climatology Network (<https://www.ncei.noaa.gov/products/land-based-station/global-historical-climatology-network-daily>; GHCN), coordinated by National Climatic Data
Center at NOAA; the Daymet gridded estimates of daily weather
parameters for North America, version 4, available from the Oak Ridge [...truncated...]
Author: R. Kyle Bocinsky [aut, cre, cph]
,
Dylan Beaudette [ctb],
Scott Chamberlain [ctb, rev],
Jeffrey Hollister [ctb],
Julia Gustavsen [rev]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 4.1.0 dated 2024-11-11 and 4.2.0 dated 2024-12-10
DESCRIPTION | 13 +- MD5 | 52 ++++---- NAMESPACE | 2 NEWS.md | 3 R/DAYMET_FUNCTIONS.R | 2 R/GHCN_FUNCTIONS.R | 2 R/ITRDB_FUNCTIONS.R | 2 R/NASS_FUNCTIONS.R | 2 R/NED_FUNCTIONS.R | 2 R/NHD_FUNCTIONS.R | 83 +++++------- R/NLCD_FUNCTIONS.R | 4 R/PADUS_FUNCTIONS.R | 48 +++---- R/SSURGO_FUNCTIONS.R | 2 R/UTILITY_FUNCTIONS.R | 276 ++++++++++++++++++++++++++++++++++++++++++- man/agol_filter.Rd |only man/agol_filter_httr.Rd |only man/get_daymet.Rd | 2 man/get_ghcn_daily.Rd | 2 man/get_itrdb.Rd | 8 - man/get_nass_cdl.Rd | 2 man/get_ned.Rd | 2 man/get_nhd.Rd | 2 man/get_nlcd.Rd | 2 man/get_nlcd_annual.Rd | 6 man/get_padus.Rd | 2 man/get_ssurgo.Rd | 31 ++-- man/plot_nhd.Rd | 2 tests/testthat/test.SSURGO.R | 4 28 files changed, 413 insertions(+), 145 deletions(-)
Title: Determine and Evaluate Optimal Cutpoints in Binary
Classification Tasks
Description: Estimate cutpoints that optimize a specified metric in binary classification tasks
and validate performance using bootstrapping. Some methods for more robust cutpoint
estimation are supported, e.g. a parametric method assuming normal distributions,
bootstrapped cutpoints, and smoothing of the metric values per cutpoint using
Generalized Additive Models. Various plotting functions are included. For an overview
of the package see Thiele and Hirschfeld (2021) <doi:10.18637/jss.v098.i11>.
Author: Christian Thiele [cre, aut]
Maintainer: Christian Thiele <c.thiele@gmx-topmail.de>
Diff between cutpointr versions 1.1.2 dated 2022-04-13 and 1.2.0 dated 2024-12-10
cutpointr-1.1.2/cutpointr/man/cutpoint_knots.Rd |only cutpointr-1.1.2/cutpointr/man/maximize_spline_metric.Rd |only cutpointr-1.1.2/cutpointr/tests/testthat/Rplots.pdf |only cutpointr-1.2.0/cutpointr/DESCRIPTION | 12 cutpointr-1.2.0/cutpointr/MD5 | 223 +-- cutpointr-1.2.0/cutpointr/NAMESPACE | 205 +-- cutpointr-1.2.0/cutpointr/NEWS.md | 10 cutpointr-1.2.0/cutpointr/R/add_metric.R | 324 ++-- cutpointr-1.2.0/cutpointr/R/boot_ci.R | 172 +- cutpointr-1.2.0/cutpointr/R/compat-lifecycle.R | 520 +++---- cutpointr-1.2.0/cutpointr/R/cutpointr.R | 7 cutpointr-1.2.0/cutpointr/R/grid_arrange_shared_legend.R | 82 - cutpointr-1.2.0/cutpointr/R/metrics.R | 1 cutpointr-1.2.0/cutpointr/R/oc_manual.R | 30 cutpointr-1.2.0/cutpointr/R/oc_mean.R | 48 cutpointr-1.2.0/cutpointr/R/oc_median.R | 40 cutpointr-1.2.0/cutpointr/R/oc_youden_kernel.R | 186 +- cutpointr-1.2.0/cutpointr/R/oc_youden_normal.R | 128 - cutpointr-1.2.0/cutpointr/R/optimize_metric.R | 156 -- cutpointr-1.2.0/cutpointr/R/plot.cutpointr.R | 102 - cutpointr-1.2.0/cutpointr/R/plot.multi_cutpointr.R | 24 cutpointr-1.2.0/cutpointr/R/plot_cut_boot.R | 136 +- cutpointr-1.2.0/cutpointr/R/plot_roc.R | 208 +-- cutpointr-1.2.0/cutpointr/R/plot_x.R | 210 +-- cutpointr-1.2.0/cutpointr/R/predict.cutpointr.R | 154 +- cutpointr-1.2.0/cutpointr/R/prep.R | 108 - cutpointr-1.2.0/cutpointr/R/print.cutpointr.R | 46 cutpointr-1.2.0/cutpointr/R/print.multi_cutpointr.R | 24 cutpointr-1.2.0/cutpointr/R/print.summary_cutpointr.R | 4 cutpointr-1.2.0/cutpointr/R/roc.R | 228 +-- cutpointr-1.2.0/cutpointr/build/vignette.rds |binary cutpointr-1.2.0/cutpointr/inst/doc/cutpointr.R | 263 +-- cutpointr-1.2.0/cutpointr/inst/doc/cutpointr.Rmd | 253 +-- cutpointr-1.2.0/cutpointr/inst/doc/cutpointr.html | 542 +++++--- cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_benchmarks.R | 18 cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_benchmarks.html | 260 ++- cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_bootstrapping.R | 2 cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_bootstrapping.html | 417 +++--- cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_estimation.R | 12 cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_estimation.Rmd | 18 cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_estimation.html | 407 +++--- cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_plotting.R | 10 cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_plotting.html | 296 ++-- cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_roc.R | 8 cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_roc.html | 261 ++- cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_user_functions.R | 4 cutpointr-1.2.0/cutpointr/inst/doc/cutpointr_user_functions.html | 239 ++- cutpointr-1.2.0/cutpointr/man/F1_score.Rd | 122 - cutpointr-1.2.0/cutpointr/man/Jaccard.Rd | 122 - cutpointr-1.2.0/cutpointr/man/abs_d_ppv_npv.Rd | 127 - cutpointr-1.2.0/cutpointr/man/abs_d_sens_spec.Rd | 128 - cutpointr-1.2.0/cutpointr/man/accuracy.Rd | 122 - cutpointr-1.2.0/cutpointr/man/add_metric.Rd | 96 - cutpointr-1.2.0/cutpointr/man/auc.Rd | 52 cutpointr-1.2.0/cutpointr/man/boot_ci.Rd | 108 - cutpointr-1.2.0/cutpointr/man/boot_test.Rd | 188 +- cutpointr-1.2.0/cutpointr/man/cohens_kappa.Rd | 136 +- cutpointr-1.2.0/cutpointr/man/cutpoint.Rd | 116 - cutpointr-1.2.0/cutpointr/man/cutpointr.Rd | 673 ++++------ cutpointr-1.2.0/cutpointr/man/cutpointr_.Rd | 210 +-- cutpointr-1.2.0/cutpointr/man/false_omission_rate.Rd | 130 - cutpointr-1.2.0/cutpointr/man/maximize_boot_metric.Rd | 263 +-- cutpointr-1.2.0/cutpointr/man/maximize_gam_metric.Rd | 243 +-- cutpointr-1.2.0/cutpointr/man/maximize_loess_metric.Rd | 281 ++-- cutpointr-1.2.0/cutpointr/man/maximize_metric.Rd | 203 +-- cutpointr-1.2.0/cutpointr/man/metric_constrain.Rd | 302 ++-- cutpointr-1.2.0/cutpointr/man/misclassification_cost.Rd | 132 - cutpointr-1.2.0/cutpointr/man/multi_cutpointr.Rd | 132 - cutpointr-1.2.0/cutpointr/man/npv.Rd | 122 - cutpointr-1.2.0/cutpointr/man/oc_manual.Rd | 71 - cutpointr-1.2.0/cutpointr/man/oc_mean.Rd | 87 - cutpointr-1.2.0/cutpointr/man/oc_median.Rd | 79 - cutpointr-1.2.0/cutpointr/man/oc_youden_kernel.Rd | 147 +- cutpointr-1.2.0/cutpointr/man/oc_youden_normal.Rd | 119 - cutpointr-1.2.0/cutpointr/man/odds_ratio.Rd | 122 - cutpointr-1.2.0/cutpointr/man/p_chisquared.Rd | 120 - cutpointr-1.2.0/cutpointr/man/plot.cutpointr.Rd | 76 - cutpointr-1.2.0/cutpointr/man/plot.multi_cutpointr.Rd | 32 cutpointr-1.2.0/cutpointr/man/plot.roc_cutpointr.Rd | 84 - cutpointr-1.2.0/cutpointr/man/plot_cut_boot.Rd | 70 - cutpointr-1.2.0/cutpointr/man/plot_cutpointr.Rd | 154 +- cutpointr-1.2.0/cutpointr/man/plot_metric.Rd | 98 - cutpointr-1.2.0/cutpointr/man/plot_metric_boot.Rd | 74 - cutpointr-1.2.0/cutpointr/man/plot_precision_recall.Rd | 80 - cutpointr-1.2.0/cutpointr/man/plot_roc.Rd | 104 - cutpointr-1.2.0/cutpointr/man/plot_sensitivity_specificity.Rd | 80 - cutpointr-1.2.0/cutpointr/man/plot_x.Rd | 80 - cutpointr-1.2.0/cutpointr/man/plr.Rd | 130 - cutpointr-1.2.0/cutpointr/man/ppv.Rd | 122 - cutpointr-1.2.0/cutpointr/man/precision.Rd | 122 - cutpointr-1.2.0/cutpointr/man/predict.cutpointr.Rd | 82 - cutpointr-1.2.0/cutpointr/man/print.cutpointr.Rd | 54 cutpointr-1.2.0/cutpointr/man/print.multi_cutpointr.Rd | 44 cutpointr-1.2.0/cutpointr/man/prod_ppv_npv.Rd | 128 - cutpointr-1.2.0/cutpointr/man/prod_sens_spec.Rd | 126 - cutpointr-1.2.0/cutpointr/man/prostate_nodal.Rd | 52 cutpointr-1.2.0/cutpointr/man/recall.Rd | 122 - cutpointr-1.2.0/cutpointr/man/risk_ratio.Rd | 122 - cutpointr-1.2.0/cutpointr/man/roc.Rd | 140 +- cutpointr-1.2.0/cutpointr/man/roc01.Rd | 138 +- cutpointr-1.2.0/cutpointr/man/sensitivity.Rd | 114 - cutpointr-1.2.0/cutpointr/man/specificity.Rd | 112 - cutpointr-1.2.0/cutpointr/man/suicide.Rd | 64 cutpointr-1.2.0/cutpointr/man/sum_ppv_npv.Rd | 128 - cutpointr-1.2.0/cutpointr/man/sum_sens_spec.Rd | 126 - cutpointr-1.2.0/cutpointr/man/total_utility.Rd | 160 +- cutpointr-1.2.0/cutpointr/man/tp.Rd | 144 +- cutpointr-1.2.0/cutpointr/man/tpr.Rd | 152 +- cutpointr-1.2.0/cutpointr/man/user_span_cutpointr.Rd | 46 cutpointr-1.2.0/cutpointr/man/youden.Rd | 126 - cutpointr-1.2.0/cutpointr/tests/testthat.R | 8 cutpointr-1.2.0/cutpointr/tests/testthat/test-cutpointr.R | 65 cutpointr-1.2.0/cutpointr/vignettes/cutpointr.Rmd | 253 +-- cutpointr-1.2.0/cutpointr/vignettes/cutpointr_estimation.Rmd | 18 114 files changed, 7506 insertions(+), 7475 deletions(-)
Title: Clustering of Weighted Data
Description: Clusters state sequences and weighted data. It provides an optimized weighted PAM algorithm as well as functions for aggregating replicated cases, computing cluster quality measures for a range of clustering solutions and plotting (fuzzy) clusters of state sequences. Parametric bootstraps methods to validate typology of sequences are also provided. Finally, it provides a fuzzy and crisp CLARA algorithm to cluster large database with sequence analysis.
Author: Matthias Studer [aut, cre]
Maintainer: Matthias Studer <matthias.studer@unige.ch>
Diff between WeightedCluster versions 1.8-0 dated 2024-10-02 and 1.8-1 dated 2024-12-10
DESCRIPTION | 11 +-- MD5 | 40 +++++++---- NEWS | 9 ++ R/zzz.R | 10 +- build/vignette.rds |binary inst/doc/BigDataSA.R |only inst/doc/BigDataSA.Rmd |only inst/doc/BigDataSA.html |only inst/doc/ClusterExternalValidSA.R |only inst/doc/ClusterExternalValidSA.Rmd |only inst/doc/ClusterExternalValidSA.html |only inst/doc/ClusterValidSA.R |only inst/doc/ClusterValidSA.Rmd |only inst/doc/ClusterValidSA.html |only inst/doc/FuzzySA.R |only inst/doc/FuzzySA.Rmd |only inst/doc/FuzzySA.html |only inst/doc/WeightedCluster.R | 18 ++--- inst/doc/WeightedCluster.pdf |binary inst/doc/WeightedClusterFR.R | 18 ++--- inst/doc/WeightedClusterFR.pdf |binary inst/doc/WeightedClusterPreview.R | 8 +- inst/doc/WeightedClusterPreview.pdf |binary src/cluster.h | 2 vignettes/BigDataSA.Rmd |only vignettes/ClusterExternalValidSA.Rmd |only vignettes/ClusterValidSA.Rmd |only vignettes/FuzzySA.Rmd |only vignettes/manual.bib | 125 +++++++++++++++++++++++++++++++---- 29 files changed, 184 insertions(+), 57 deletions(-)
More information about WeightedCluster at CRAN
Permanent link
More information about OhdsiShinyAppBuilder at CRAN
Permanent link
More information about htsDegenerateR at CRAN
Permanent link
Title: Rosenthal's Fail Safe Number and Related Functions
Description: Estimation of Rosenthal's fail safe number including confidence intervals. The relevant papers are the following. Konstantinos C. Fragkos, Michail Tsagris and Christos C. Frangos (2014). "Publication Bias in Meta-Analysis: Confidence Intervals for Rosenthal's Fail-Safe Number". International Scholarly Research Notices, Volume 2014. <doi:10.1155/2014/825383>. Konstantinos C. Fragkos, Michail Tsagris and Christos C. Frangos (2017). "Exploring the distribution for the estimator of Rosenthal's fail-safe number of unpublished studies in meta-analysis". Communications in Statistics-Theory and Methods, 46(11):5672--5684. <doi:10.1080/03610926.2015.1109664>.
Author: Michail Tsagris [aut, cre],
Constantinos Frangos [aut],
Christos Frangos [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between fsn versions 0.2 dated 2022-03-09 and 0.4 dated 2024-12-10
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NAMESPACE | 2 +- R/convergence.rate.R | 12 +++++------- R/den.plot.R | 4 ++-- R/foldnorm.nr.density.R | 2 ++ R/rosenthal.R | 2 ++ R/truncnorm.nr.density.R | 2 ++ man/fsn-package.Rd | 4 ++-- man/halfnorm.fixednr.ci.Rd | 2 +- man/halfnorm.randomnr.ci.Rd | 2 +- man/rosenthal.Rd | 2 +- 12 files changed, 35 insertions(+), 31 deletions(-)
Title: Publication-Ready Tables for 'manymome' Results
Description: Converts results from the 'manymome' package,
presented in Cheung and Cheung (2023)
<doi:10.3758/s13428-023-02224-z>, to publication-ready
tables.
Author: Shu Fai Cheung [aut, cre] ,
Sing-Hang Cheung [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between manymome.table versions 0.3.0 dated 2024-03-04 and 0.4.0 dated 2024-12-10
DESCRIPTION | 8 +-- MD5 | 21 +++++---- NEWS.md | 14 ++++++ R/as_flextable.cond_indirect_effects.R | 65 ++++++++++++++++++++++++------ R/as_flextable.indirect_list.R | 7 ++- README.md | 2 build/vignette.rds |binary inst/doc/manymome.table.html | 31 +++++++++----- inst/tinytest/test_cond_effect.R |only inst/tinytest/test_cond_ind.R | 5 +- man/as_flextable.cond_indirect_effects.Rd | 15 ++++++ man/as_flextable.indirect_list.Rd | 5 +- 12 files changed, 130 insertions(+), 43 deletions(-)
More information about manymome.table at CRAN
Permanent link
Title: Easily Install and Load 'tesselle' Packages
Description: Easy install and load key packages from the 'tesselle' suite
in a single step. The 'tesselle' suite is a collection of packages for
research and teaching in archaeology. These packages focus on
quantitative analysis methods developed for archaeology. The
'tesselle' packages are designed to work seamlessly together and to
complement general-purpose and other specialized statistical packages.
These packages can be used to explore and analyze common data types in
archaeology: count data, compositional data and chronological data.
Learn more about 'tesselle' at <https://www.tesselle.org>.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [ctb] ,
Universite Bordeaux Montaigne [fnd],
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between tesselle versions 1.4.0 dated 2023-11-30 and 1.5.0 dated 2024-12-10
DESCRIPTION | 25 +++++++++----------- MD5 | 18 +++++++------- NEWS.md | 10 ++++++++ R/attach.R | 8 +++--- R/tesselle-internal.R | 20 ++++++++-------- R/tesselle-package.R | 2 - R/zzz.R | 5 +--- README.md | 59 +++++++++++++++++++++++++----------------------- inst/CITATION | 19 +++++++++++++-- man/tesselle-package.Rd | 3 -- 10 files changed, 96 insertions(+), 73 deletions(-)
Title: Inference for Released Plug-in Sampling Single Synthetic Dataset
Description: Considering the singly imputed synthetic data generated via plug-in sampling under the multivariate normal model, draws inference procedures including the generalized variance, the sphericity test, the test for independence between two subsets of variables, and the test for the regression of one set of variables on the other. For more details see Klein et al. (2021) <doi:10.1007/s13571-019-00215-9>.
Author: Ricardo Moura [aut, cre, cph] ,
Mina Norouzirad [aut] ,
Vitor Augusto [aut] ,
Miguel Fonseca [ctb] ,
FCT, I.P. [fnd] )
Maintainer: Ricardo Moura <rp.moura@fct.unl.pt>
Diff between PSinference versions 0.2.1 dated 2024-09-19 and 0.2.2 dated 2024-12-10
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 14 +++++++++----- R/Sphdist.R | 2 +- R/simSynthData.R | 5 +++-- 5 files changed, 21 insertions(+), 16 deletions(-)
Title: Hierarchical Partitioning of Marginal R2 for Generalized
Mixed-Effect Models
Description: Conducts hierarchical partitioning to calculate individual contributions of each predictor (fixed effects) towards marginal R2 for generalized linear mixed-effect model (including lm, glm and glmm) based on output of r.squaredGLMM() in 'MuMIn', applying the algorithm of Lai J.,Zou Y., Zhang S.,Zhang X.,Mao L.(2022)glmm.hp: an R package for computing individual effect of predictors in generalized linear mixed models.Journal of Plant Ecology,15(6)1302-1307<doi:10.1093/jpe/rtac096>.
Author: Jiangshan Lai [aut, cre] ,
Kim Nimon [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between glmm.hp versions 0.1-6 dated 2024-10-26 and 0.1-7 dated 2024-12-10
DESCRIPTION | 8 - MD5 | 9 - R/glmm.hp.r | 353 +++++++++++++++++++++++++++++++++++++++++++++------------ R/zzz.R |only inst/CITATION | 29 ++-- man/glmm.hp.Rd | 9 + 6 files changed, 311 insertions(+), 97 deletions(-)
Title: Generation of Different Animated Christmas Cards
Description: Generation of different Christmas cards, most of them being
animated. Most of the cards can be generated in three languages (English,
Catalan and Spanish). The collection started in 2009.
Author: Jose Barrera-Gomez [aut, cre]
Maintainer: Jose Barrera-Gomez <jose.barrera@uab.cat>
Diff between christmas versions 1.3.0 dated 2023-12-06 and 1.4.0 dated 2024-12-10
DESCRIPTION | 14 +++++++------- MD5 | 14 ++++++++------ NAMESPACE | 1 + NEWS | 5 +++++ R/auxiliarFunctions.R | 46 ++++++++++++++++++++++++++++++++++++++++++++++ R/xmasfractaltree.R |only README.md | 2 +- man/christmas-package.Rd | 2 +- man/xmasfractaltree.Rd |only 9 files changed, 69 insertions(+), 15 deletions(-)
Title: Progress Bar for Parallel Tasks
Description: A simple interface in the form of R6 classes for executing tasks in
parallel, tracking their progress, and displaying accurate progress bars.
Author: Mihai Constantin [aut, cre]
Maintainer: Mihai Constantin <mihai@mihaiconstantin.com>
Diff between parabar versions 1.2.1 dated 2024-10-17 and 1.3.0 dated 2024-12-10
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Title: Simple Functions to Save Time and Memory
Description: Fast and memory-efficient (or 'cheap') tools to facilitate
efficient programming, saving time and memory. It aims to provide
'cheaper' alternatives to common base R functions, as well as some
additional functions.
Author: Nick Christofides [aut, cre]
Maintainer: Nick Christofides <nick.christofides.r@gmail.com>
Diff between cheapr versions 0.9.91 dated 2024-11-11 and 0.9.92 dated 2024-12-10
DESCRIPTION | 6 MD5 | 50 ++--- NEWS.md | 16 + R/as_discrete.R | 3 R/case.R | 38 ++-- R/cpp11.R | 8 R/dots.R | 2 R/extras.R | 11 - R/factors.R | 2 R/get_breaks.R | 170 ------------------ R/lists.R | 3 R/new_df.R | 16 + R/scalars.R | 37 ++- R/utils.R | 60 ++++-- README.md | 188 +++++++++++++------- man/as_discrete.Rd | 3 man/figures/README-unnamed-chunk-30-1.png |only man/figures/README-unnamed-chunk-30-2.png |only man/get_breaks.Rd | 156 ++++++++-------- src/cheapr.h | 3 src/cpp11.cpp | 16 + src/nas.cpp | 41 +--- src/scalars.cpp | 265 ++++++++++++++++++++++++++++ src/sequences.cpp | 278 ++++++++++++++++++++++++++++++ src/utils.cpp | 5 src/which.cpp | 154 ++++++++++++++++ tests/testthat/test-get_breaks.R |only tests/testthat/test-scalars.R |only 28 files changed, 1107 insertions(+), 424 deletions(-)
Title: Analysis of Chronological Patterns from Archaeological Count
Data
Description: A toolkit for absolute and relative dating and analysis of
chronological patterns. This package includes functions for
chronological modeling and dating of archaeological assemblages from
count data. It provides methods for matrix seriation. It also allows
to compute time point estimates and density estimates of the
occupation and duration of an archaeological site.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [ctb] ,
Ben Marwick [ctb] ,
Anne Philippe [ctb] ,
Universite Bordeaux Montaigne [fnd],
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between kairos versions 2.1.1 dated 2024-07-26 and 2.2.0 dated 2024-12-10
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Title: Univariate Time Series Forecasting
Description: An engine for univariate time series forecasting using
different regression models in an autoregressive way. The engine
provides an uniform interface for applying the different models.
Furthermore, it is extensible so that users can easily apply their
own regression models to univariate time series forecasting and
benefit from all the features of the engine, such as preprocessings
or estimation of forecast accuracy.
Author: Maria Pilar Frias-Bustamante [aut]
,
Francisco Martinez [aut, cre, cph]
Maintainer: Francisco Martinez <fmartin@ujaen.es>
Diff between utsf versions 1.0.0 dated 2024-10-14 and 1.1.0 dated 2024-12-10
utsf-1.0.0/utsf/man/differences.Rd |only utsf-1.1.0/utsf/DESCRIPTION | 6 utsf-1.1.0/utsf/MD5 | 39 ++--- utsf-1.1.0/utsf/NAMESPACE | 5 utsf-1.1.0/utsf/NEWS.md | 7 utsf-1.1.0/utsf/R/build_examples.R | 18 ++ utsf-1.1.0/utsf/R/build_models.R | 7 utsf-1.1.0/utsf/R/do_tuneGrid.R | 2 utsf-1.1.0/utsf/R/estimate_accuracy.R | 107 +++++++++---- utsf-1.1.0/utsf/R/first_differences.R | 31 ++- utsf-1.1.0/utsf/R/forecast.R | 82 +++++----- utsf-1.1.0/utsf/R/plot.R | 12 + utsf-1.1.0/utsf/R/print_utsf.R | 13 + utsf-1.1.0/utsf/R/recursive_prediction.R | 4 utsf-1.1.0/utsf/build/vignette.rds |binary utsf-1.1.0/utsf/inst/doc/utsf.R | 41 ++--- utsf-1.1.0/utsf/inst/doc/utsf.Rmd | 81 ++++------ utsf-1.1.0/utsf/inst/doc/utsf.html | 241 +++++++++++++++---------------- utsf-1.1.0/utsf/man/evaluation.Rd |only utsf-1.1.0/utsf/man/forecast.Rd | 30 +-- utsf-1.1.0/utsf/man/trend.Rd |only utsf-1.1.0/utsf/vignettes/utsf.Rmd | 81 ++++------ 22 files changed, 443 insertions(+), 364 deletions(-)
Title: Unit Testing for R
Description: Software testing is important, but, in part because it is
frustrating and boring, many of us avoid it. 'testthat' is a testing
framework for R that is easy to learn and use, and integrates with
your existing 'workflow'.
Author: Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd],
R Core team [ctb] )
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between testthat versions 3.2.1.1 dated 2024-04-13 and 3.2.2 dated 2024-12-10
DESCRIPTION | 15 MD5 | 176 +-- NAMESPACE | 4 NEWS.md | 509 +++++----- R/describe.R | 15 R/edition.R | 1 R/expect-condition.R | 44 R/expect-constant.R | 23 R/expect-inheritance.R | 29 R/expect-invisible.R | 4 R/expect-no-condition.R | 14 R/expect-self-test.R | 85 + R/expect-setequal.R | 14 R/expect-vector.R | 5 R/expectation.R | 1 R/expectations-matches.R | 1 R/local.R | 7 R/mock.R | 19 R/reporter-progress.R | 4 R/reporter-zzz.R | 2 R/reporter.R | 2 R/skip.R | 10 R/snapshot-file.R | 2 R/snapshot-reporter.R | 3 R/snapshot.R | 12 R/source.R | 2 R/test-example.R | 2 R/test-files.R | 12 R/test-that.R | 8 README.md | 2 build/vignette.rds |binary inst/doc/custom-expectation.html | 2 inst/doc/parallel.html | 2 inst/doc/skipping.R | 36 inst/doc/skipping.html | 2 inst/doc/snapshotting.R | 4 inst/doc/snapshotting.html | 34 inst/doc/special-files.R | 14 inst/doc/special-files.Rmd | 4 inst/doc/special-files.html | 6 inst/doc/test-fixtures.R | 80 - inst/doc/test-fixtures.Rmd | 2 inst/doc/test-fixtures.html | 8 inst/doc/third-edition.R | 4 inst/doc/third-edition.html | 39 inst/include/testthat/testthat.h | 2 man/Reporter.Rd | 2 man/describe.Rd | 10 man/expect_match.Rd | 1 man/expect_null.Rd | 1 man/expect_success.Rd | 22 man/expect_vector.Rd | 4 man/expectation.Rd | 1 man/inheritance-expectations.Rd | 5 man/local_edition.Rd | 1 man/local_test_context.Rd | 2 man/logical-expectations.Rd | 3 man/skip.Rd | 2 man/test_dir.Rd | 1 man/with_mock.Rd | 17 tests/testthat/_snaps/R4.4 |only tests/testthat/_snaps/expect-condition.md | 20 tests/testthat/_snaps/expect-constant.md | 7 tests/testthat/_snaps/expect-inheritance.md | 16 tests/testthat/_snaps/expect-invisible.md |only tests/testthat/_snaps/expect-setequal.md | 24 tests/testthat/_snaps/mock.md |only tests/testthat/_snaps/reporter-debug.md | 8 tests/testthat/_snaps/skip.md | 2 tests/testthat/_snaps/snapshot.md | 8 tests/testthat/test-examples.R | 2 tests/testthat/test-expect-condition.R | 18 tests/testthat/test-expect-constant.R | 6 tests/testthat/test-expect-inheritance.R | 18 tests/testthat/test-expect-invisible.R | 7 tests/testthat/test-expect-no-condition.R | 16 tests/testthat/test-expect-self-test.R | 16 tests/testthat/test-expect-setequal.R | 12 tests/testthat/test-local.R | 2 tests/testthat/test-mock.R | 152 -- tests/testthat/test-parallel-crash.R | 17 tests/testthat/test-parallel/crash/tests/testthat/test-crash-3.R | 2 tests/testthat/test-reporter-debug.R | 5 tests/testthat/test-snapshot-reporter.R | 4 tests/testthat/test-snapshot.R | 13 tests/testthat/test-verify-conditions-lines.txt | 4 tests/testthat/test-verify-conditions.txt | 4 tests/testthat/test-verify-output.R | 6 vignettes/special-files.Rmd | 4 vignettes/test-fixtures.Rmd | 2 90 files changed, 951 insertions(+), 782 deletions(-)
Title: Scoring Methodology for Ordered Factors
Description: Starting from a given object representing a fitted model
(within a certain set of model classes) whose (non-)linear predictor
includes some ordered factor(s) among the explanatory variables, a new
model is constructed and fitted where each named factor is replaced by a
single numeric score, suitably chosen so that the new variable produces a
fit comparable with the standard methodology based on a set of polynomial
contrasts. Two variants of the present approach have been developed, one in
each of the next references: Azzalini (2023) <doi:10.1002/sta4.624>, (2024)
<doi:10.48550/arXiv.2406.15933>.
Author: Adelchi Azzalini [aut, cre]
Maintainer: Adelchi Azzalini <adelchi.azzalini@unipd.it>
Diff between smof versions 1.2.1 dated 2024-10-30 and 1.2.2 dated 2024-12-10
DESCRIPTION | 10 +- MD5 | 16 ++-- NAMESPACE | 12 +-- R/smof-methods.R | 25 +++---- R/smof.R | 142 ++++++++++++++++++++++++++++------------ build/partial.rdb |binary inst/NEWS.Rd | 36 +++++++--- man/smof.Rd | 190 ++++++++++++++++++++++++++++++++++++------------------ man/smof_refit.Rd | 25 +++---- 9 files changed, 300 insertions(+), 156 deletions(-)
Title: Expanded Replacement and Extension of the 'optim' Function
Description: Provides a replacement and extension of the optim()
function to call to several function minimization codes in R in a single
statement. These methods handle smooth, possibly box constrained functions
of several or many parameters. Note that function 'optimr()' was prepared to
simplify the incorporation of minimization codes going forward. Also implements some
utility codes and some extra solvers, including safeguarded Newton methods.
Many methods previously separate are now included here.
This is the version for CRAN.
Author: John C Nash [aut, cre],
Ravi Varadhan [aut],
Hans W Borchers [ctb],
Gabor Grothendieck [ctb]
Maintainer: John C Nash <profjcnash@gmail.com>
Diff between optimx versions 2023-10.21 dated 2023-10-24 and 2024-12.2 dated 2024-12-10
optimx-2023-10.21/optimx/inst/doc/examples/onepar_test.R |only optimx-2023-10.21/optimx/inst/doc/examples/ox.R |only optimx-2023-10.21/optimx/inst/doc/replaced2021 |only optimx-2023-10.21/optimx/inst/doc/replaced2023 |only optimx-2023-10.21/optimx/inst/doc/vignette-source/ExplainGradMinR.pdf |only optimx-2023-10.21/optimx/inst/doc/vignette-source/Extend-optimx.pdf |only optimx-2023-10.21/optimx/inst/doc/vignette-source/Intro-to-optimx.pdf |only optimx-2023-10.21/optimx/inst/doc/vignette-source/Rvmmin.pdf |only optimx-2023-10.21/optimx/inst/doc/vignette-source/SNewton.pdf |only optimx-2023-10.21/optimx/man/Rcgminb.Rd |only optimx-2023-10.21/optimx/man/Rcgminu.Rd |only optimx-2023-10.21/optimx/man/Rvmminb.Rd |only optimx-2023-10.21/optimx/man/Rvmminu.Rd |only optimx-2023-10.21/optimx/man/tn.Rd |only optimx-2023-10.21/optimx/man/tnbc.Rd |only optimx-2024-12.2/optimx/DESCRIPTION | 27 +- optimx-2024-12.2/optimx/MD5 | 82 ++++----- optimx-2024-12.2/optimx/NAMESPACE | 2 optimx-2024-12.2/optimx/NEWS | 60 ++++++ optimx-2024-12.2/optimx/R/Rcgminb.R | 8 optimx-2024-12.2/optimx/R/Rcgminu.R | 9 optimx-2024-12.2/optimx/R/checksolver.R | 7 optimx-2024-12.2/optimx/R/grfwd.R | 2 optimx-2024-12.2/optimx/R/ncg.R | 35 +++ optimx-2024-12.2/optimx/R/opm.R | 8 optimx-2024-12.2/optimx/R/opm2optimr.R |only optimx-2024-12.2/optimx/R/optimr.R | 35 ++- optimx-2024-12.2/optimx/R/optimr2opm.R |only optimx-2024-12.2/optimx/R/proptimr.R | 12 - optimx-2024-12.2/optimx/R/tn.R | 16 + optimx-2024-12.2/optimx/R/tnbc.R | 22 +- optimx-2024-12.2/optimx/README.md |only optimx-2024-12.2/optimx/build/vignette.rds |binary optimx-2024-12.2/optimx/inst/doc/AddPracmaNM2optimx.pdf |only optimx-2024-12.2/optimx/inst/doc/AddPracmaNM2optimx.pdf.asis |only optimx-2024-12.2/optimx/inst/doc/ExplainGradMinR.pdf |binary optimx-2024-12.2/optimx/inst/doc/Intro-to-optimx.pdf |binary optimx-2024-12.2/optimx/inst/doc/SNewton.pdf |binary optimx-2024-12.2/optimx/inst/doc/examples/simfunX.R |only optimx-2024-12.2/optimx/inst/doc/ncgqs2204.R | 1 optimx-2024-12.2/optimx/inst/doc/optcontrol.xls |binary optimx-2024-12.2/optimx/inst/doc/vignette-source/AddPracmaNM2optimx.Rmd |only optimx-2024-12.2/optimx/inst/doc/vignette-source/ExplainGradMinR.Rmd | 10 - optimx-2024-12.2/optimx/man/Rcgmin.Rd | 91 ++++------ optimx-2024-12.2/optimx/man/Rtnmin.Rd |only optimx-2024-12.2/optimx/man/Rvmmin.Rd | 11 - optimx-2024-12.2/optimx/man/fnchk.Rd | 2 optimx-2024-12.2/optimx/man/grpracma.Rd | 6 optimx-2024-12.2/optimx/man/ncg.Rd |only optimx-2024-12.2/optimx/man/nvm.Rd |only optimx-2024-12.2/optimx/man/opm2optimr.Rd |only optimx-2024-12.2/optimx/man/optimr.Rd | 31 ++- optimx-2024-12.2/optimx/man/optimx-package.Rd | 4 optimx-2024-12.2/optimx/man/proptimr.Rd | 5 optimx-2024-12.2/optimx/vignettes/AddPracmaNM2optimx.pdf.asis |only 55 files changed, 316 insertions(+), 170 deletions(-)
Title: Multivariate Data Analysis
Description: Simple Principal Components Analysis (PCA) and (Multiple)
Correspondence Analysis (CA) based on the Singular Value Decomposition
(SVD). This package provides S4 classes and methods to compute,
extract, summarize and visualize results of multivariate data
analysis. It also includes methods for partial bootstrap validation
described in Greenacre (1984, ISBN: 978-0-12-299050-2) and Lebart et
al. (2006, ISBN: 978-2-10-049616-7).
Author: Nicolas Frerebeau [aut, cre] ,
Jean-Baptiste Fourvel [ctb] ,
Brice Lebrun [ctb] ,
Universite Bordeaux Montaigne [fnd],
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between dimensio versions 0.10.0 dated 2024-11-08 and 0.10.1 dated 2024-12-10
DESCRIPTION | 8 - MD5 | 110 ++++++++++++------------ NEWS.md | 8 + R/AllClasses.R | 2 R/AllGenerics.R | 5 - R/annotations.R | 2 R/ca.R | 4 R/dimensio-internal.R | 5 + R/dimensio-package.R | 2 R/screeplot.R | 17 ++- R/show.R | 61 ++++++++----- R/viz_contributions.R | 2 R/viz_coordinates.R | 14 +-- R/viz_cos2.R | 4 R/viz_ellipse.R | 2 R/viz_hull.R | 2 README.md | 16 +++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/pca.R | 18 +-- inst/doc/pca.html | 12 +- inst/examples/ex-contributions.R | 2 inst/po/fr/LC_MESSAGES/R-dimensio.mo |binary inst/tinytest/_tinysnapshot/CA_eig_0-0.svg | 2 inst/tinytest/_tinysnapshot/CA_eig_0-1.svg | 4 inst/tinytest/_tinysnapshot/CA_eig_1-1.svg | 2 inst/tinytest/_tinysnapshot/CA_ind_contrib.svg | 2 inst/tinytest/_tinysnapshot/CA_var_contrib.svg | 2 inst/tinytest/_tinysnapshot/CA_var_cos2.svg | 68 +++++++------- inst/tinytest/_tinysnapshot/PCA_eig_0-1.svg | 2 inst/tinytest/_tinysnapshot/PCA_eig_1-1.svg | 2 inst/tinytest/_tinysnapshot/PCA_ind_contrib.svg | 2 inst/tinytest/_tinysnapshot/PCA_var_contrib.svg | 2 inst/tinytest/_tinysnapshot/PCA_var_cos2.svg | 44 ++++----- inst/tinytest/test_bootstrap_ca.R | 8 - inst/tinytest/test_bootstrap_pca.R | 2 inst/tinytest/test_ca.R | 2 inst/tinytest/test_mca.R | 2 inst/tinytest/test_pca.R | 2 inst/tinytest/test_plot_ca.R | 2 inst/tinytest/test_plot_pca.R | 2 man/biplot.Rd | 3 man/dimensio-package.Rd | 2 man/figures/README-biplot-1.png |binary man/figures/README-plot-var-1.png |binary man/figures/README-plot-var-2.png |binary man/label.Rd | 8 - man/plot.Rd | 2 man/prepare_plot.Rd | 2 man/viz_contributions.Rd | 4 man/viz_individuals.Rd | 12 ++ man/viz_points.Rd | 2 man/viz_variables.Rd | 8 + man/viz_wrap.Rd | 2 po/R-dimensio.pot | 86 ++++++++++++++++++ po/R-fr.po | 87 ++++++++++++++++++ 56 files changed, 452 insertions(+), 214 deletions(-)
Title: Variable Selection Algorithms Using the Distance Correlation
Description: The 'FBED' and 'mmpc' variable selection algorithms have been implemented using the distance correlation. The references include: Tsamardinos I., Aliferis C. F. and Statnikov A. (2003). "Time and sample efficient discovery of Markovblankets and direct causal relations". In Proceedings of the ninth ACM SIGKDD international Conference. <doi:10.1145/956750.956838>. Borboudakis G. and Tsamardinos I. (2019). "Forward-backward selection with early dropping". Journal of Machine Learning Research, 20(8): 1--39. <doi:10.48550/arXiv.1705.10770>. Huo X. and Szekely G.J. (2016). "Fast computing for distance covariance". Technometrics, 58(4): 435--447. <doi:10.1080/00401706.2015.1054435>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between dcorVS versions 1.0 dated 2023-10-18 and 1.1 dated 2024-12-10
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- man/dcor.bsmmpc.Rd | 9 ++++++--- man/dcor.mmpc.Rd | 6 +++++- man/dcorVS-package.Rd | 4 ++-- 5 files changed, 22 insertions(+), 14 deletions(-)
Title: Archaeological Time Series
Description: A toolkit for archaeological time series and time intervals.
This package provides a system of classes and methods to represent and
work with archaeological time series and time intervals. Dates are
represented as "rata die" and can be converted to (virtually) any
calendar defined by Reingold and Dershowitz (2018)
<doi:10.1017/9781107415058>. This packages offers a simple API that
can be used by other specialized packages.
Author: Nicolas Frerebeau [aut, cre] ,
Joe Roe [aut] ,
Brice Lebrun [ctb] ,
Universite Bordeaux Montaigne [fnd],
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between aion versions 1.2.0 dated 2024-11-13 and 1.3.0 dated 2024-12-10
DESCRIPTION | 10 +-- MD5 | 48 +++++++++---------- NAMESPACE | 1 NEWS.md | 7 ++ R/AllGenerics.R | 19 +++++-- R/aion-package.R | 4 - R/calendar.R | 14 +++-- R/show.R | 23 +++++---- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/aion.html | 22 ++++---- inst/doc/extending.Rmd | 2 inst/doc/extending.html | 8 +-- inst/po/fr/LC_MESSAGES/R-aion.mo |binary inst/tinytest/_tinysnapshot/show_calendar_CE.txt | 2 inst/tinytest/_tinysnapshot/show_calendar_julian.txt | 2 inst/tinytest/_tinysnapshot/show_rata_die.txt | 2 inst/tinytest/_tinysnapshot/show_time_series.txt | 2 inst/tinytest/test_calendar.R | 6 +- man/aion-package.Rd | 4 - man/calendar_get.Rd | 19 +++++-- po/R-aion.pot | 37 ++++++++------ po/R-fr.po | 40 ++++++++------- vignettes/extending.Rmd | 2 25 files changed, 160 insertions(+), 116 deletions(-)
Title: Interface for 'Google Gemini' API
Description: Provides a comprehensive interface for Google Gemini API,
enabling users to access and utilize Gemini Large Language Model (LLM) functionalities directly from R.
This package facilitates seamless integration with Google Gemini, allowing for advanced language processing,
text generation, and other AI-driven capabilities within the R environment.
For more information, please visit <https://ai.google.dev/docs/gemini_api_overview>.
Author: Jinhwan Kim [aut, cre, cph] ,
Maciej Nasinski [ctb]
Maintainer: Jinhwan Kim <hwanistic@gmail.com>
Diff between gemini.R versions 0.5.2 dated 2024-08-26 and 0.6.1 dated 2024-12-10
DESCRIPTION | 17 ++++++++-------- MD5 | 16 +++++++++------ NAMESPACE | 4 +++ NEWS.md | 2 + R/gen_docs.R |only R/setAPI.R | 3 ++ README.md | 49 ++++++++++++++++++++++++++++++++++++------------ inst |only man/figures/roxygen.gif |only man/gen_docs.Rd |only man/setAPI.Rd | 5 ++++ 11 files changed, 70 insertions(+), 26 deletions(-)
Title: Causal Inference with Continuous (Multiple Time Point)
Interventions
Description: Estimation of counterfactual outcomes for multiple values of continuous interventions at different time points, and plotting of causal dose-response curves. Details are given in Schomaker, McIlleron, Denti, Diaz (2024) <doi:10.48550/arXiv.2305.06645>.
Author: Michael Schomaker [aut, cre]
Maintainer: Michael Schomaker <michael.schomaker@stat.uni-muenchen.de>
Diff between CICI versions 0.9.3 dated 2024-11-01 and 0.9.4 dated 2024-12-10
DESCRIPTION | 8 +-- MD5 | 10 ++-- R/gformula.r | 105 +++++++++++++++++++++++++--------------------------- R/helper.r | 25 ++++++++---- R/plot.gformula.r | 3 - man/CICI-package.Rd | 4 - 6 files changed, 82 insertions(+), 73 deletions(-)
Title: Approximate String Matching, Fuzzy Text Search, and String
Distance Functions
Description: Implements an approximate string matching version of R's native
'match' function. Also offers fuzzy text search based on various string
distance measures. Can calculate various string distances based on edits
(Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment), qgrams (q-
gram, cosine, jaccard distance) or heuristic metrics (Jaro, Jaro-Winkler). An
implementation of soundex is provided as well. Distances can be computed between
character vectors while taking proper care of encoding or between integer
vectors representing generic sequences. This package is built for speed and
runs in parallel by using 'openMP'. An API for C or C++ is exposed as well.
Reference: MPJ van der Loo (2014) <doi:10.32614/RJ-2014-011>.
Author: Mark van der Loo [aut, cre] ,
Jan van der Laan [ctb],
R Core Team [ctb],
Nick Logan [ctb],
Chris Muir [ctb],
Johannes Gruber [ctb],
Brian Ripley [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between stringdist versions 0.9.12 dated 2023-11-28 and 0.9.14 dated 2024-12-10
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS | 7 +++++++ R/doc_metrics.R | 2 +- R/phonetic.R | 2 +- R/qgrams.R | 9 +++++++++ R/stringdist.R | 2 +- build/vignette.rds |binary inst/doc/RJournal_6_111-122-2014.pdf |binary inst/doc/stringdist_C-Cpp_api.pdf |binary inst/tinytest/test_qgrams.R | 2 +- man/phonetic.Rd | 2 +- man/stringdist-metrics.Rd | 2 +- man/stringdist-package.Rd | 22 ++++++++++++++++++++++ src/qgram.c | 3 ++- 15 files changed, 64 insertions(+), 25 deletions(-)
Title: Nonparametric Kernel Smoothing Methods for Mixed Data Types
Description: Nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca/>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca/>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://sharcnet.ca/>). We would also like to acknowledge the contributions of the GNU GSL authors. In particular, we adapt the GNU GSL B-spline routine gsl_bspline.c adding automated support for quantile knots (in addition to uniform knots), providing missing functionality for derivatives, and for extending the splines beyond their endpoints.
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between np versions 0.60-17 dated 2023-03-13 and 0.60-18 dated 2024-12-10
CHANGELOG | 13 +++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 42 +++++++++++++++++++++--------------------- NAMESPACE | 1 + R/np.kernel.R | 16 ++++++++++++---- R/np.regression.R | 20 +++++++++++++++----- R/zzz.R | 2 +- build/vignette.rds |binary data/cps71.rda |binary inst/doc/entropy_np.pdf |binary inst/doc/np.pdf |binary inst/doc/np_faq.Rnw | 33 ++++++++++++++++++++++++++++----- inst/doc/np_faq.pdf |binary man/b.star.Rd | 2 +- man/np-package.Rd | 1 + man/np.deptest.Rd | 4 ++-- man/np.sdeptest.Rd | 4 ++-- man/np.symtest.Rd | 2 +- man/npuniden.boundary.Rd | 22 ++++++++++++---------- man/npuniden.sc.Rd | 4 ++-- src/nr.c | 2 +- vignettes/np_faq.Rnw | 33 ++++++++++++++++++++++++++++----- 22 files changed, 145 insertions(+), 64 deletions(-)
Title: Easily Scrape and Process AFL Data
Description: An easy package for scraping and processing Australia Rules Football (AFL)
data. 'fitzRoy' provides a range of functions for accessing publicly available data
from 'AFL Tables' <https://afltables.com/afl/afl_index.html>, 'Footy Wire' <https://www.footywire.com> and
'The Squiggle' <https://squiggle.com.au>. Further functions allow for easy processing,
cleaning and transformation of this data into formats that can be used for analysis.
Author: James Day [cre, aut],
Robert Nguyen [aut],
Matthew Erbs [ctb],
Oscar Lane [aut],
Jason Zivkovic [ctb],
Jacob Holden [ctb]
Maintainer: James Day <jamesthomasday@gmail.com>
Diff between fitzRoy versions 1.5.0 dated 2024-07-30 and 1.6.0 dated 2024-12-10
fitzRoy-1.5.0/fitzRoy/R/fetch_lineup.R |only fitzRoy-1.5.0/fitzRoy/data/player_mapping_afltables.rda |only fitzRoy-1.5.0/fitzRoy/man/player_mapping_afltables.Rd |only fitzRoy-1.5.0/fitzRoy/tests/testthat/test-fetch_lineup.R |only fitzRoy-1.6.0/fitzRoy/DESCRIPTION | 10 fitzRoy-1.6.0/fitzRoy/MD5 | 103 ++--- fitzRoy-1.6.0/fitzRoy/NAMESPACE | 5 fitzRoy-1.6.0/fitzRoy/R/data.R | 8 fitzRoy-1.6.0/fitzRoy/R/fetch-coaches-votes.R | 15 fitzRoy-1.6.0/fitzRoy/R/fetch-ladder.R | 34 + fitzRoy-1.6.0/fitzRoy/R/fetch-lineup.R |only fitzRoy-1.6.0/fitzRoy/R/fetch-player-details.R | 27 - fitzRoy-1.6.0/fitzRoy/R/fetch-player-stats.R | 9 fitzRoy-1.6.0/fitzRoy/R/fetch-results.R | 4 fitzRoy-1.6.0/fitzRoy/R/helper-aflcoaches.R | 19 - fitzRoy-1.6.0/fitzRoy/R/helpers-afl.R | 3 fitzRoy-1.6.0/fitzRoy/R/helpers-afltables-playerstats.R | 18 fitzRoy-1.6.0/fitzRoy/R/helpers-footywire-playerdetails.R | 97 +++-- fitzRoy-1.6.0/fitzRoy/R/helpers-general.R | 124 ++++++ fitzRoy-1.6.0/fitzRoy/R/plot-score-worm.R |only fitzRoy-1.6.0/fitzRoy/R/team_colour_palettes.R | 18 fitzRoy-1.6.0/fitzRoy/R/utils-pipe.R |only fitzRoy-1.6.0/fitzRoy/build/vignette.rds |binary fitzRoy-1.6.0/fitzRoy/data/dictionary_afltables.rda |binary fitzRoy-1.6.0/fitzRoy/data/mapping_afltables.rda |binary fitzRoy-1.6.0/fitzRoy/inst/WORDLIST | 16 fitzRoy-1.6.0/fitzRoy/inst/doc/aflca-coaches-votes.R | 76 ++-- fitzRoy-1.6.0/fitzRoy/inst/doc/aflca-coaches-votes.html | 4 fitzRoy-1.6.0/fitzRoy/inst/doc/docker-support.html | 4 fitzRoy-1.6.0/fitzRoy/inst/doc/elo-ratings-example.R | 92 ++-- fitzRoy-1.6.0/fitzRoy/inst/doc/elo-ratings-example.html | 8 fitzRoy-1.6.0/fitzRoy/inst/doc/fitzRoy.R | 188 +++++----- fitzRoy-1.6.0/fitzRoy/inst/doc/fitzRoy.html | 4 fitzRoy-1.6.0/fitzRoy/inst/doc/main-fetch-functions.R | 64 +-- fitzRoy-1.6.0/fitzRoy/inst/doc/main-fetch-functions.html | 4 fitzRoy-1.6.0/fitzRoy/inst/doc/player-details.R | 24 - fitzRoy-1.6.0/fitzRoy/inst/doc/player-details.html | 4 fitzRoy-1.6.0/fitzRoy/inst/doc/score-worms.R |only fitzRoy-1.6.0/fitzRoy/inst/doc/score-worms.Rmd |only fitzRoy-1.6.0/fitzRoy/inst/doc/score-worms.html |only fitzRoy-1.6.0/fitzRoy/inst/doc/using-fryzigg-stats.R | 6 fitzRoy-1.6.0/fitzRoy/inst/doc/using-fryzigg-stats.html | 4 fitzRoy-1.6.0/fitzRoy/inst/doc/using-squiggle-api.R | 54 +- fitzRoy-1.6.0/fitzRoy/inst/doc/using-squiggle-api.html | 4 fitzRoy-1.6.0/fitzRoy/inst/doc/womens-stats.R | 166 ++++---- fitzRoy-1.6.0/fitzRoy/inst/doc/womens-stats.html | 4 fitzRoy-1.6.0/fitzRoy/man/dictionary_afltables.Rd | 2 fitzRoy-1.6.0/fitzRoy/man/fetch_lineup.Rd | 2 fitzRoy-1.6.0/fitzRoy/man/fetch_player_details.Rd | 10 fitzRoy-1.6.0/fitzRoy/man/fetch_score_worm_data.Rd |only fitzRoy-1.6.0/fitzRoy/man/parse_team_abbr.Rd |only fitzRoy-1.6.0/fitzRoy/man/pipe.Rd |only fitzRoy-1.6.0/fitzRoy/man/plot_score_worm.Rd |only fitzRoy-1.6.0/fitzRoy/man/plot_score_worm_totals.Rd |only fitzRoy-1.6.0/fitzRoy/tests/testthat/test-fetch-betting-odds.R | 3 fitzRoy-1.6.0/fitzRoy/tests/testthat/test-fetch-lineup.R |only fitzRoy-1.6.0/fitzRoy/tests/testthat/test-fetch-player-stats.R | 44 +- fitzRoy-1.6.0/fitzRoy/tests/testthat/test-fetch-results.R | 3 fitzRoy-1.6.0/fitzRoy/tests/testthat/test-helpers-afl.R | 7 fitzRoy-1.6.0/fitzRoy/tests/testthat/test-team_colour_palettes.R | 11 fitzRoy-1.6.0/fitzRoy/vignettes/score-worms.Rmd |only 61 files changed, 774 insertions(+), 528 deletions(-)
Title: Wrapper Functions Around 'Charles Schwab Individual Trader API'
Description: For those wishing to interact with the 'Charles Schwab Individual Trader API' (<https://developer.schwab.com/products/trader-api--individual>) with R in a simplified manner, this package offers wrapper functions around authentication and the available API calls to streamline the process.
Author: Nick Bultman [aut, cre, cph]
Maintainer: Nick Bultman <njbultman74@gmail.com>
Diff between charlesschwabapi versions 1.0.3 dated 2024-09-14 and 1.0.4 dated 2024-12-10
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/get_authentication_tokens.R | 38 +++++++++++++++++++++++++++----------- 3 files changed, 32 insertions(+), 16 deletions(-)
More information about charlesschwabapi at CRAN
Permanent link
Title: Visualizing the Elements Within Bio-Sequences
Description: Visualizing the types and distribution of elements within
bio-sequences. At the same time, We have developed a geom layer,
geom_rrect(), that can generate rounded rectangles. No external references
are used in the development of this package.
Author: Shiqi Zhao [aut, cre, cph]
Maintainer: Shiqi Zhao <zhaosq89@163.com>
Diff between BioVizSeq versions 0.1.1 dated 2024-11-27 and 0.1.2 dated 2024-12-10
DESCRIPTION | 8 ++++---- MD5 | 13 ++++++++----- NAMESPACE | 5 ++++- NEWS.md | 10 +++++++--- R/combi_plot.R |only R/globalvariables.R |only R/zzz.R | 2 +- man/combi_p.Rd |only man/globalVariables.Rd | 24 ++++++++++++------------ 9 files changed, 36 insertions(+), 26 deletions(-)
Title: Augments 'ASReml-R' in Fitting Mixed Models and Packages
Generally in Exploring Prediction Differences
Description: Assists in automating the selection of terms to include in mixed models when
'asreml' is used to fit the models. Procedures are available for choosing models that
conform to the hierarchy or marginality principle, for fitting and choosing between
two-dimensional spatial models using correlation, natural cubic smoothing spline and
P-spline models. A history of the fitting of a sequence of models is kept in a data frame.
Also used to compute functions and contrasts of, to investigate differences between and
to plot predictions obtained using any model fitting function. The content falls into
the following natural groupings: (i) Data, (ii) Model modification functions, (iii) Model
selection and description functions, (iv) Model diagnostics and simulation functions,
(v) Prediction production and presentation functions, (vi) Response transformation
functions, (vii) Object manipulation functions, and (viii) Miscellaneous functions
(for further details see 'asremlPlus-package' in help). The [...truncated...]
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between asremlPlus versions 4.4.40 dated 2024-10-27 and 4.4.43 dated 2024-12-10
asremlPlus-4.4.40/asremlPlus/R/spatial.funcs.v8.r |only asremlPlus-4.4.40/asremlPlus/R/spatial.funcs.v9.r |only asremlPlus-4.4.40/asremlPlus/R/spatial.utilities.v2.r |only asremlPlus-4.4.40/asremlPlus/inst/doc/Ladybird.asreml.pdf |only asremlPlus-4.4.40/asremlPlus/inst/doc/Ladybird.asreml.pdf.asis |only asremlPlus-4.4.40/asremlPlus/inst/doc/Ladybird.lm.pdf |only asremlPlus-4.4.40/asremlPlus/inst/doc/Ladybird.lm.pdf.asis |only asremlPlus-4.4.40/asremlPlus/vignettes/Ladybird.asreml.pdf.asis |only asremlPlus-4.4.40/asremlPlus/vignettes/Ladybird.lm.pdf.asis |only asremlPlus-4.4.43/asremlPlus/DESCRIPTION | 8 - asremlPlus-4.4.43/asremlPlus/MD5 | 63 ++++---- asremlPlus-4.4.43/asremlPlus/R/LSDutilities.R | 22 +-- asremlPlus-4.4.43/asremlPlus/R/alldiffs.v4.r | 26 +-- asremlPlus-4.4.43/asremlPlus/R/asremlPlusObjUtils.r | 42 ++++- asremlPlus-4.4.43/asremlPlus/R/asremlPlusUtilities.r | 7 asremlPlus-4.4.43/asremlPlus/R/pairTrans.r | 6 asremlPlus-4.4.43/asremlPlus/R/plotLSDs.r | 12 - asremlPlus-4.4.43/asremlPlus/R/plotPvalues.r | 4 asremlPlus-4.4.43/asremlPlus/R/reml4.v11.r | 73 +++++++--- asremlPlus-4.4.43/asremlPlus/R/spatial.funcs.v10.r |only asremlPlus-4.4.43/asremlPlus/R/spatial.utilities.v3.r |only asremlPlus-4.4.43/asremlPlus/build/partial.rdb |binary asremlPlus-4.4.43/asremlPlus/build/vignette.rds |binary asremlPlus-4.4.43/asremlPlus/inst/NEWS.Rd | 18 ++ asremlPlus-4.4.43/asremlPlus/inst/doc/LadybirdEMMs.asreml.pdf |only asremlPlus-4.4.43/asremlPlus/inst/doc/LadybirdEMMs.asreml.pdf.asis |only asremlPlus-4.4.43/asremlPlus/inst/doc/LadybirdEMMs.lm.pdf |only asremlPlus-4.4.43/asremlPlus/inst/doc/LadybirdEMMs.lm.pdf.asis |only asremlPlus-4.4.43/asremlPlus/inst/doc/Wheat.analysis.pdf |binary asremlPlus-4.4.43/asremlPlus/inst/doc/Wheat.infoCriteria.pdf |binary asremlPlus-4.4.43/asremlPlus/inst/doc/WheatSpatialModels.pdf |binary asremlPlus-4.4.43/asremlPlus/inst/doc/asremlPlus-manual.pdf |binary asremlPlus-4.4.43/asremlPlus/man/as.asrtests.Rd | 2 asremlPlus-4.4.43/asremlPlus/man/getTestEntry.asrtests.Rd | 5 asremlPlus-4.4.43/asremlPlus/man/print.test.summary.Rd | 6 asremlPlus-4.4.43/asremlPlus/tests/testthat/test42EstimateV.r | 6 asremlPlus-4.4.43/asremlPlus/tests/testthat/test42GeneticCane.R | 9 - asremlPlus-4.4.43/asremlPlus/tests/testthat/test42PredictionsPresentation.r | 6 asremlPlus-4.4.43/asremlPlus/tests/testthat/test42SpatialModels.r | 10 - asremlPlus-4.4.43/asremlPlus/vignettes/LadybirdEMMs.asreml.pdf.asis |only asremlPlus-4.4.43/asremlPlus/vignettes/LadybirdEMMs.lm.pdf.asis |only 41 files changed, 202 insertions(+), 123 deletions(-)
Title: Indices of Effect Size
Description: Provide utilities to work with indices of effect size for a wide
variety of models and hypothesis tests (see list of supported models using
the function 'insight::supported_models()'), allowing computation of and
conversion between indices such as Cohen's d, r, odds, etc.
References: Ben-Shachar et al. (2020) <doi:10.21105/joss.02815>.
Author: Mattan S. Ben-Shachar [aut, cre]
,
Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Indrajeet Patil [aut] ,
Brenton M. Wiernik [aut] ,
Remi Theriault [aut] ,
Ken Kelley [ctb],
David Stanley [ctb],
Aaron Caldwell [ctb] ,
Jessica Burnett [rev] ,
Johan [...truncated...]
Maintainer: Mattan S. Ben-Shachar <mattansb@msbstats.info>
Diff between effectsize versions 0.8.9 dated 2024-07-03 and 1.0.0 dated 2024-12-10
DESCRIPTION | 41 ++--- MD5 | 76 +++++----- NAMESPACE | 14 - NEWS.md | 14 + R/convert_between_d_to_r.R | 47 ++++-- R/interpret.R | 11 + R/interpret_bf.R | 10 - R/interpret_direction.R | 8 - R/interpret_oddsratio.R | 40 +---- R/interpret_rope.R | 5 R/rank_ANOVA.R | 11 + R/zzz_deprecated.R | 80 ----------- README.md | 18 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/anovaES.html | 7 inst/doc/convert_p_OR_RR.html | 7 inst/doc/convert_r_d_OR.html | 7 inst/doc/effectsize.html | 233 ++++++++++++++++----------------- inst/doc/effectsize_API.html | 4 inst/doc/from_test_statistics.html | 7 inst/doc/interpret.html | 7 inst/doc/standardized_differences.R | 26 +-- inst/doc/standardized_differences.html | 110 ++++++--------- inst/doc/statistical_power.html | 49 +++--- inst/doc/xtabs.R | 44 +++--- inst/doc/xtabs.html | 117 +++++++--------- man/d_to_r.Rd | 10 - man/effectsize-package.Rd | 12 - man/effectsize.Rd | 8 - man/effectsize_CIs.Rd | 12 - man/effectsize_deprecated.Rd | 33 ---- man/interpret.Rd | 4 man/interpret_direction.Rd | 1 man/interpret_oddsratio.Rd | 20 +- man/interpret_rope.Rd | 7 tests/testthat/test-convert_between.R | 39 +++++ tests/testthat/test-htest_data.R | 4 tests/testthat/test-interpret.R | 189 +++++++++++++++----------- 39 files changed, 634 insertions(+), 698 deletions(-)
Title: DDI with R
Description: Useful functions for various DDI (Data Documentation Initiative)
related inputs and outputs. Converts data files to and from DDI, SPSS,
Stata, SAS, R and Excel, including user declared missing values.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between DDIwR versions 0.18 dated 2024-01-08 and 0.19 dated 2024-12-10
DDIwR-0.18/DDIwR/R/exportDDI.R |only DDIwR-0.18/DDIwR/R/getMetadata.R |only DDIwR-0.18/DDIwR/man/exportDDI.Rd |only DDIwR-0.18/DDIwR/man/getMetadata.Rd |only DDIwR-0.19/DDIwR/DESCRIPTION | 8 DDIwR-0.19/DDIwR/MD5 | 46 DDIwR-0.19/DDIwR/NAMESPACE | 2 DDIwR-0.19/DDIwR/R/DDI_Codebook_2.6.R |15952 +++++++++++++++++++-------------- DDIwR-0.19/DDIwR/R/DDIwR_package.R | 7 DDIwR-0.19/DDIwR/R/children.R | 54 DDIwR-0.19/DDIwR/R/convert.R | 147 DDIwR-0.19/DDIwR/R/exportCodebook.R |only DDIwR-0.19/DDIwR/R/getCodebook.R |only DDIwR-0.19/DDIwR/R/internals.R | 403 DDIwR-0.19/DDIwR/R/makeElement.R | 26 DDIwR-0.19/DDIwR/R/searchFor.R | 87 DDIwR-0.19/DDIwR/R/setupfile.R | 16 DDIwR-0.19/DDIwR/R/showDetails.R | 220 DDIwR-0.19/DDIwR/R/testValid.R | 6 DDIwR-0.19/DDIwR/R/updateCodebook.R | 11 DDIwR-0.19/DDIwR/inst/ChangeLog | 275 DDIwR-0.19/DDIwR/man/DDIwR_internal.Rd | 12 DDIwR-0.19/DDIwR/man/DDIwR_package.Rd | 7 DDIwR-0.19/DDIwR/man/convert.Rd | 25 DDIwR-0.19/DDIwR/man/exportCodebook.Rd |only DDIwR-0.19/DDIwR/man/getCodebook.Rd |only DDIwR-0.19/DDIwR/man/makeElement.Rd | 15 DDIwR-0.19/DDIwR/man/searchFor.Rd | 13 28 files changed, 10335 insertions(+), 6997 deletions(-)
Title: Utilities and Design Aids for Up-and-Down Dose-Finding Studies
Description: Up-and-Down is the most popular design approach for dose-finding, but has been severely under-served by the statistical computing community. This is the first package to address Up-and-Down's needs. For a recent methodological tutorial on Up-and-Down, see Oron et al. (2022) <doi:10.1097/ALN.0000000000004282>.
Author: Assaf P. Oron [cre, aut]
Maintainer: Assaf P. Oron <assaf.oron@gmail.com>
Diff between upndown versions 0.1.0 dated 2023-06-07 and 0.2.0 dated 2024-12-10
upndown-0.1.0/upndown/man/adaptmean.Rd |only upndown-0.2.0/upndown/DESCRIPTION | 12 upndown-0.2.0/upndown/MD5 | 52 +- upndown-0.2.0/upndown/NAMESPACE | 7 upndown-0.2.0/upndown/R/averaging.r | 148 +++++-- upndown-0.2.0/upndown/R/bootstrap.r |only upndown-0.2.0/upndown/R/cirWrappers.r | 75 +++ upndown-0.2.0/upndown/R/genutils.r | 22 - upndown-0.2.0/upndown/R/matrixFunctions.r | 25 - upndown-0.2.0/upndown/R/simulate.r |only upndown-0.2.0/upndown/R/vectorFunctions.r | 93 +++- upndown-0.2.0/upndown/build/vignette.rds |binary upndown-0.2.0/upndown/inst/doc/upndown_basics.R | 12 upndown-0.2.0/upndown/inst/doc/upndown_basics.Rmd | 90 ++-- upndown-0.2.0/upndown/inst/doc/upndown_basics.html | 401 ++++++++++++--------- upndown-0.2.0/upndown/inst/examples/avgExamples.r | 35 + upndown-0.2.0/upndown/inst/examples/simExample.r |only upndown-0.2.0/upndown/inst/examples/vecExamples.r | 6 upndown-0.2.0/upndown/man/bcdmat.Rd | 6 upndown-0.2.0/upndown/man/dfboot.Rd |only upndown-0.2.0/upndown/man/dfsim.Rd |only upndown-0.2.0/upndown/man/dixonmood.Rd | 37 + upndown-0.2.0/upndown/man/drplot.Rd | 5 upndown-0.2.0/upndown/man/dynamean.Rd |only upndown-0.2.0/upndown/man/krow.Rd |only upndown-0.2.0/upndown/man/pivec.Rd | 19 upndown-0.2.0/upndown/man/reversmean.Rd | 77 ++-- upndown-0.2.0/upndown/man/udest.Rd | 23 - upndown-0.2.0/upndown/man/udplot.Rd | 15 upndown-0.2.0/upndown/man/validUDinput.Rd | 8 upndown-0.2.0/upndown/vignettes/upndown_basics.Rmd | 90 ++-- 31 files changed, 828 insertions(+), 430 deletions(-)