Title: Estimate Split-Half Reliabilities
Description: Estimates split-half reliabilities for scoring algorithms of cognitive tasks and questionnaires. The 'splithalfr' supports researcher-provided scoring algorithms, with six vignettes illustrating how on included datasets. The package provides four splitting methods (first-second, odd-even, permutated, Monte Carlo), the option to stratify splits by task design, a number of reliability coefficients, the option to sub-sample data, and bootstrapped confidence intervals.
Author: Thomas Pronk [aut, cre]
Maintainer: Thomas Pronk <pronkthomas@gmail.com>
Diff between splithalfr versions 2.2.2 dated 2023-09-14 and 3.0.0 dated 2025-04-28
DESCRIPTION | 16 ++--- MD5 | 76 ++++++++++++------------- NAMESPACE | 3 R/by_split.R | 26 ++++++-- R/data.R | 14 ++-- R/split_aggregations.R | 94 ++++++++++++++++++------------- R/splithalfr.R | 22 ++++--- README.md | 52 ++++++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 - inst/doc/aat_double_diff_of_medians.Rmd | 17 ++++- inst/doc/aat_double_diff_of_medians.html | 37 ++++++++---- inst/doc/gng_dprime.Rmd | 18 ++++- inst/doc/gng_dprime.html | 37 ++++++++---- inst/doc/iat_dscore_ri.Rmd | 18 ++++- inst/doc/iat_dscore_ri.html | 37 ++++++++---- inst/doc/rapi_sum.Rmd | 22 +++++-- inst/doc/rapi_sum.html | 42 +++++++++---- inst/doc/splitting_methods.html | 4 - inst/doc/sst_ssrti.Rmd | 17 ++++- inst/doc/sst_ssrti.html | 37 ++++++++---- inst/doc/vpt_diff_of_means.Rmd | 17 ++++- inst/doc/vpt_diff_of_means.html | 37 ++++++++---- man/by_split.Rd | 8 +- man/ds_aat.Rd | 2 man/ds_gng.Rd | 2 man/ds_iat.Rd | 4 - man/ds_rapi.Rd | 2 man/ds_sst.Rd | 2 man/ds_vpt.Rd | 2 man/split_ci.Rd | 69 +++++++++++++--------- man/splithalfr.Rd | 24 +++++-- vignettes/aat_double_diff_of_medians.Rmd | 17 ++++- vignettes/gng_dprime.Rmd | 18 ++++- vignettes/iat_dscore_ri.Rmd | 18 ++++- vignettes/rapi_sum.Rmd | 22 +++++-- vignettes/sst_ssrti.Rmd | 17 ++++- vignettes/vpt_diff_of_means.Rmd | 17 ++++- 39 files changed, 592 insertions(+), 279 deletions(-)
Title: Scraping Chilean Media
Description: A system for extracting news from Chilean media,
specifically through Web Scapping from Chilean media. The package allows for news searches using search phrases and date filters,
and returns the results in a structured format, ready for analysis.
Additionally, it includes functions to clean the extracted data, visualize it, and
store it in databases. All of this can be done automatically, facilitating the collection and analysis of relevant
information from Chilean media.
Author: Exequiel Trujillo [aut, cre, cph, fnd],
Ismael Aguayo [aut, fnd],
Klaus Lehmann [aut, fnd]
Maintainer: Exequiel Trujillo <exequiel.trujillo@ug.uchile.cl>
Diff between datamedios versions 1.1.0 dated 2025-02-18 and 1.2.0 dated 2025-04-28
DESCRIPTION | 8 LICENSE | 4 MD5 | 80 +++--- NAMESPACE | 38 +- NEWS.md | 31 +- R/agregar_datos_unicos.R | 23 + R/extraccion_parrafos.R | 92 +++---- R/extraer_noticias_fecha.R | 222 +++++------------ R/extraer_noticias_fecha_bbcl.R |only R/extraer_noticias_fecha_emol.R |only R/extraer_noticias_max_res.R | 188 +++++--------- R/extraer_noticias_max_res_bbcl.R |only R/extraer_noticias_max_res_emol.R |only R/global.R | 11 R/grafico_notas_por_mes.R | 2 R/init_req_bbcl.R | 4 R/init_req_emol.R |only R/iteracion_emol.R |only R/limpieza_notas.R | 10 R/parserFuentes.R |only R/tabla_frecuencia_palabras.R | 150 +++++------ R/utils-pipe.R |only R/word_cloud.R | 8 README.md | 305 ++++++++++++------------ man/agregar_datos_unicos.Rd | 49 +-- man/extraccion_parrafos.Rd | 50 +-- man/extraer_noticias_fecha.Rd | 72 ++--- man/extraer_noticias_fecha_bbcl.Rd |only man/extraer_noticias_fecha_emol.Rd |only man/extraer_noticias_max_res.Rd | 68 +++-- man/extraer_noticias_max_res_bbcl.Rd |only man/extraer_noticias_max_res_emol.Rd |only man/grafico_notas_por_mes.Rd | 62 ++-- man/init_req_bbcl.Rd | 42 +-- man/init_req_emol.Rd |only man/iteracion_emol.Rd |only man/limpieza_notas.Rd | 59 ++-- man/parserFuentes.Rd |only man/pipe.Rd |only man/tabla_frecuencia_palabras.Rd | 72 ++--- man/word_cloud.Rd | 60 ++-- tests/testthat/test_extraccion_parrafos.R | 208 ++++++++-------- tests/testthat/test_extraer_noticias_fecha.R | 50 +-- tests/testthat/test_extraer_noticias_max_res.R | 52 ++-- tests/testthat/test_grafico_notas_por_mes.R | 126 ++++----- tests/testthat/test_init_req_bbcl.R | 78 +++--- tests/testthat/test_limpieza_notas.R | 206 ++++++++-------- tests/testthat/test_tabla_frecuencia_palabras.R | 132 +++++----- tests/testthat/test_word_cloud.R | 206 ++++++++-------- 49 files changed, 1358 insertions(+), 1410 deletions(-)
Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries.
'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting,
model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre],
Tom Carruthers [aut],
Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between SAMtool versions 1.8.0 dated 2024-11-07 and 1.8.1 dated 2025-04-28
DESCRIPTION | 8 ++--- MD5 | 18 ++++++------ NEWS.md | 5 +++ R/RCM2.R | 4 ++ R/RCM_int.R | 37 ++++++++++++++---------- R/RCM_rmd.R | 66 +++++++++++++++++++++++++++++++++----------- R/define_S4_class_RCModel.R | 61 ++++++++++++++++++++++++++++++++++------ R/diagnostic.R | 2 - build/partial.rdb |binary inst/include/ns/ns_RCM.hpp | 37 ++++++++++++++++++------ 10 files changed, 175 insertions(+), 63 deletions(-)
Title: Interface to 'LANDFIRE Product Service' API
Description: Provides access to a suite of geospatial data layers for wildfire management, fuel modeling, ecology, natural resource management, climate, conservation, etc., via the 'LANDFIRE' (<https://www.landfire.gov/>) Product Service ('LFPS') API.
Author: Mark Buckner [aut, cre, cph]
Maintainer: Mark Buckner <mab677@cornell.edu>
Diff between rlandfire versions 1.0.0 dated 2024-03-15 and 2.0.0 dated 2025-04-28
rlandfire-1.0.0/rlandfire/LICENSE |only rlandfire-1.0.0/rlandfire/inst/extdata/Wildfire_History.zip |only rlandfire-2.0.0/rlandfire/DESCRIPTION | 19 rlandfire-2.0.0/rlandfire/MD5 | 58 - rlandfire-2.0.0/rlandfire/NAMESPACE | 6 rlandfire-2.0.0/rlandfire/NEWS.md | 23 rlandfire-2.0.0/rlandfire/R/checkStatus.R |only rlandfire-2.0.0/rlandfire/R/landfireAPI.R | 500 ++++++++-- rlandfire-2.0.0/rlandfire/R/rlandfire-package.R | 1 rlandfire-2.0.0/rlandfire/R/utils.R | 112 ++ rlandfire-2.0.0/rlandfire/R/zzz.R |only rlandfire-2.0.0/rlandfire/README.md | 179 ++- rlandfire-2.0.0/rlandfire/build/vignette.rds |binary rlandfire-2.0.0/rlandfire/inst/CITATION | 8 rlandfire-2.0.0/rlandfire/inst/doc/rlandfire.R | 70 + rlandfire-2.0.0/rlandfire/inst/doc/rlandfire.Rmd | 119 ++ rlandfire-2.0.0/rlandfire/inst/doc/rlandfire.html | 464 +++++---- rlandfire-2.0.0/rlandfire/inst/extdata/LFPS_cat_Return.zip |only rlandfire-2.0.0/rlandfire/inst/extdata/wildfire.zip |only rlandfire-2.0.0/rlandfire/man/cancelJob.Rd |only rlandfire-2.0.0/rlandfire/man/checkStatus.Rd |only rlandfire-2.0.0/rlandfire/man/figures/README-unnamed-chunk-14-1.png |only rlandfire-2.0.0/rlandfire/man/figures/README-unnamed-chunk-15-1.png |only rlandfire-2.0.0/rlandfire/man/figures/README-unnamed-chunk-17-1.png |only rlandfire-2.0.0/rlandfire/man/figures/lfps.png |binary rlandfire-2.0.0/rlandfire/man/healthCheck.Rd |only rlandfire-2.0.0/rlandfire/man/landfireAPI.Rd | 16 rlandfire-2.0.0/rlandfire/man/landfireAPIv2.Rd |only rlandfire-2.0.0/rlandfire/man/landfireVSI.Rd |only rlandfire-2.0.0/rlandfire/man/rlandfire-package.Rd | 2 rlandfire-2.0.0/rlandfire/man/viewProducts.Rd | 3 rlandfire-2.0.0/rlandfire/tests/testthat/setup.R |only rlandfire-2.0.0/rlandfire/tests/testthat/test-checkStatus.R |only rlandfire-2.0.0/rlandfire/tests/testthat/test-getAOI.R | 18 rlandfire-2.0.0/rlandfire/tests/testthat/test-landfireAPI.R | 318 +++++- rlandfire-2.0.0/rlandfire/tests/testthat/test-utils.R |only rlandfire-2.0.0/rlandfire/tests/testthat/testdata |only rlandfire-2.0.0/rlandfire/vignettes/rlandfire.Rmd | 119 ++ 38 files changed, 1558 insertions(+), 477 deletions(-)
Title: Interface to 'Zenodo' REST API
Description: Provides an Interface to 'Zenodo' (<https://zenodo.org>) REST API,
including management of depositions, attribution of DOIs by 'Zenodo' and
upload and download of files.
Author: Emmanuel Blondel [aut, cre] ,
Julien Barde [ctb] ,
Stephen Eglen [ctb] ,
Hans Van Calster [ctb] ,
Floris Vanderhaeghe [ctb] ,
Jemma Stachelek [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between zen4R versions 0.10 dated 2024-06-05 and 0.10.1 dated 2025-04-28
DESCRIPTION | 10 +++++----- MD5 | 24 +++++++++++++----------- NEWS.md | 10 +++++++++- R/ZenodoManager.R | 19 ++++++++----------- R/ZenodoRecord.R | 12 ++++++------ R/ZenodoRequest.R | 4 ++-- R/zen4R_logger.R | 4 ++-- README.md | 8 +++++--- inst/extdata |only man/ZenodoManager.Rd | 4 ++-- man/ZenodoRecord.Rd | 6 +++--- man/ZenodoRequest.Rd | 4 ++-- man/zen4RLogger.Rd | 4 ++-- 13 files changed, 59 insertions(+), 50 deletions(-)
Title: Music Notation Syntax, Manipulation, Analysis and Transcription
in R
Description: Provides a music notation syntax and a collection of music
programming functions for generating, manipulating, organizing, and analyzing
musical information in R. Music syntax can be entered directly in character
strings, for example to quickly transcribe short pieces of music. The
package contains functions for directly performing various mathematical,
logical and organizational operations and musical transformations on special
object classes that facilitate working with music data and notation. The
same music data can be organized in tidy data frames for a familiar and
powerful approach to the analysis of large amounts of structured music data.
Functions are available for mapping seamlessly between these formats and
their representations of musical information. The package also provides an
API to 'LilyPond' (<https://lilypond.org/>) for transcribing musical
representations in R into tablature ("tabs") and sheet music. 'LilyPond' is
open source music engraving software for gener [...truncated...]
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between tabr versions 0.5.1 dated 2024-09-11 and 0.5.2 dated 2025-04-28
DESCRIPTION | 11 ++++++----- MD5 | 26 +++++++++++++------------- NEWS.md | 5 +++++ README.md | 12 ++++++------ build/vignette.rds |binary inst/doc/tabr-prog-chords.html | 2 +- inst/doc/tabr-prog-music.html | 2 +- inst/doc/tabr-prog-noteinfo.html | 2 +- inst/doc/tabr-prog-notes.html | 2 +- inst/doc/tabr-prog-nw.html | 2 +- inst/doc/tabr-prog-scales.html | 2 +- man/tabr.Rd | 1 + tests/testthat.R | 4 ++++ tests/testthat/test-outputs.R | 3 +++ 14 files changed, 44 insertions(+), 30 deletions(-)
Title: Product-Limit Estimation for Censored Event History Analysis
Description: Fast and user friendly implementation of nonparametric estimators
for censored event history (survival) analysis. Kaplan-Meier and
Aalen-Johansen method.
Author: Thomas A. Gerds [aut, cre]
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>
Diff between prodlim versions 2024.06.25 dated 2024-06-24 and 2025.04.28 dated 2025-04-28
prodlim-2024.06.25/prodlim/R/resolveLinPred.R |only prodlim-2024.06.25/prodlim/R/resolveX.R |only prodlim-2025.04.28/prodlim/DESCRIPTION | 21 +- prodlim-2025.04.28/prodlim/MD5 | 42 +++-- prodlim-2025.04.28/prodlim/NAMESPACE | 10 + prodlim-2025.04.28/prodlim/R/EventHistory.frame.R | 60 ++++---- prodlim-2025.04.28/prodlim/R/Hist.R | 118 +++++++--------- prodlim-2025.04.28/prodlim/R/as.data.frame.prodlim.R |only prodlim-2025.04.28/prodlim/R/as.data.table.prodlim.R |only prodlim-2025.04.28/prodlim/R/as_tibble.prodlim.R |only prodlim-2025.04.28/prodlim/R/followup.R | 53 ++++++- prodlim-2025.04.28/prodlim/R/ggprodlim.R |only prodlim-2025.04.28/prodlim/R/leaveOneOut.R | 2 prodlim-2025.04.28/prodlim/R/lifeTab.competing.risks.R | 1 prodlim-2025.04.28/prodlim/R/lifeTab.survival.R | 1 prodlim-2025.04.28/prodlim/R/plot.prodlim.R | 2 prodlim-2025.04.28/prodlim/R/print.potential.followup.R |only prodlim-2025.04.28/prodlim/R/prodlim.R | 45 +++--- prodlim-2025.04.28/prodlim/R/quantile.prodlim.R | 4 prodlim-2025.04.28/prodlim/R/summary.prodlim.R | 6 prodlim-2025.04.28/prodlim/man/EventHistory.frame.Rd | 2 prodlim-2025.04.28/prodlim/man/as.data.frame.prodlim.Rd |only prodlim-2025.04.28/prodlim/man/as.data.table.prodlim.Rd |only prodlim-2025.04.28/prodlim/man/as_tibble.prodlim.Rd |only prodlim-2025.04.28/prodlim/man/followup.Rd |only prodlim-2025.04.28/prodlim/man/ggprodlim.Rd |only prodlim-2025.04.28/prodlim/man/plot.prodlim.Rd | 2 prodlim-2025.04.28/prodlim/man/prodlim.Rd | 15 +- 28 files changed, 229 insertions(+), 155 deletions(-)
Title: Meta Clustering with Similarity Network Fusion
Description: Framework to facilitate patient subtyping with similarity network fusion and meta clustering. The similarity network fusion (SNF) algorithm was introduced by Wang et al. (2014) in <doi:10.1038/nmeth.2810>. SNF is a data integration approach that can transform high-dimensional and diverse data types into a single similarity network suitable for clustering with minimal loss of information from each initial data source. The meta clustering approach was introduced by Caruana et al. (2006) in <doi:10.1109/ICDM.2006.103>. Meta clustering involves generating a wide range of cluster solutions by adjusting clustering hyperparameters, then clustering the solutions themselves into a manageable number of qualitatively similar solutions, and finally characterizing representative solutions to find ones that are best for the user's specific context. This package provides a framework to easily transform multi-modal data into a wide range of similarity network fusion-derived cluster solutio [...truncated...]
Author: Prashanth S Velayudhan [aut, cre],
Xiaoqiao Xu [aut],
Prajkta Kallurkar [aut],
Ana Patricia Balbon [aut],
Maria T Secara [aut],
Adam Taback [aut],
Denise Sabac [aut],
Nicholas Chan [aut],
Shihao Ma [aut],
Bo Wang [aut],
Daniel Felsky [aut],
Stephanie [...truncated...]
Maintainer: Prashanth S Velayudhan <psvelayu@gmail.com>
Diff between metasnf versions 2.1.1 dated 2025-04-25 and 2.1.2 dated 2025-04-28
DESCRIPTION | 6 MD5 | 42 +++--- NEWS.md | 6 R/get_representative_solutions.R | 84 ++++++------ R/heatmaps.R | 252 ++++++++++++++++++------------------ R/label_meta_clusters.R | 80 +++++------ R/label_propagation.R | 172 ++++++++++++------------ R/manhattan_plot.R | 148 +++++++-------------- R/plot.R | 64 ++++----- inst/doc/distance_metrics.html | 2 inst/doc/snf_config.html | 4 man/assoc_pval_heatmap.Rd | 24 +-- man/esm_manhattan_plot.Rd | 41 ----- man/get_matrix_order.Rd | 60 ++++---- man/get_representative_solutions.Rd | 84 ++++++------ man/label_meta_clusters.Rd | 80 +++++------ man/label_propagate.Rd | 172 ++++++++++++------------ man/mc_manhattan_plot.Rd | 107 +++++++-------- man/plot.ari_matrix.Rd | 64 ++++----- man/pval_heatmap.Rd | 44 +++--- man/shiny_annotator.Rd | 70 +++++----- man/similarity_matrix_heatmap.Rd | 54 ++++--- 22 files changed, 813 insertions(+), 847 deletions(-)
Title: Drift Adaptable Models
Description: In streaming data analysis, it is crucial to detect significant shifts in the data distribution or the accuracy of predictive models over time, a phenomenon known as **concept drift**. The **heimdall** package aims to identify when concept drift occurs and provide methodologies for adapting models in non-stationary environments.
It offers a range of state-of-the-art techniques for detecting concept drift and maintaining model performance. Additionally, **heimdall** provides tools for adapting models in response to these changes, ensuring continuous and accurate predictions in dynamic contexts.
Methods for concept drift detection are described in Tavares (2022) <doi:10.1007/s12530-021-09415-z>.
Author: Lucas Tavares [aut],
Leonardo Carvalho [aut],
Diego Carvalho [aut],
Esther Pacitti [aut],
Fabio Porto [aut],
Eduardo Ogasawara [aut, ths, cre]
,
Federal Center for Technological Education of Rio de Janeiro
[cph]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between heimdall versions 1.0.717 dated 2024-06-30 and 1.0.737 dated 2025-04-28
heimdall-1.0.717/heimdall/man/multi_criteria.Rd |only heimdall-1.0.737/heimdall/DESCRIPTION | 38 ++-- heimdall-1.0.737/heimdall/MD5 | 48 +++-- heimdall-1.0.737/heimdall/NAMESPACE | 20 ++ heimdall-1.0.737/heimdall/R/ac_drifter.R | 104 +++++++++++ heimdall-1.0.737/heimdall/R/ac_metrics.R | 51 +++++ heimdall-1.0.737/heimdall/R/ac_norm.R |only heimdall-1.0.737/heimdall/R/ac_stealthy.R | 153 ++++++++++++----- heimdall-1.0.737/heimdall/R/dfr_adwin.R | 8 heimdall-1.0.737/heimdall/R/dfr_aedd.R |only heimdall-1.0.737/heimdall/R/dfr_kldist.R | 13 + heimdall-1.0.737/heimdall/R/dfr_kswin.R | 14 - heimdall-1.0.737/heimdall/R/dfr_mcdd.R | 13 - heimdall-1.0.737/heimdall/R/dfr_page_hinkley.R | 63 ++++--- heimdall-1.0.737/heimdall/R/globals.R | 2 heimdall-1.0.737/heimdall/data/st_drift_examples.RData |binary heimdall-1.0.737/heimdall/man/dfr_adwin.Rd | 2 heimdall-1.0.737/heimdall/man/dfr_aedd.Rd |only heimdall-1.0.737/heimdall/man/dfr_kldist.Rd | 2 heimdall-1.0.737/heimdall/man/dfr_kswin.Rd | 8 heimdall-1.0.737/heimdall/man/dfr_mcdd.Rd | 2 heimdall-1.0.737/heimdall/man/dfr_multi_criteria.Rd |only heimdall-1.0.737/heimdall/man/dfr_page_hinkley.Rd | 2 heimdall-1.0.737/heimdall/man/mt_accuracy.Rd |only heimdall-1.0.737/heimdall/man/mt_fscore.Rd | 2 heimdall-1.0.737/heimdall/man/mt_rocauc.Rd |only heimdall-1.0.737/heimdall/man/mv_dist_based.Rd |only heimdall-1.0.737/heimdall/man/norm.Rd |only heimdall-1.0.737/heimdall/man/nrm_memory.Rd |only heimdall-1.0.737/heimdall/man/stealthy.Rd | 25 ++ 30 files changed, 430 insertions(+), 140 deletions(-)
More information about ggsegmentedtotalbar at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-10 1.0.0
2020-04-22 0.10.0
2019-07-03 0.9.9
2019-05-17 0.9.8
2019-04-21 0.9.7
2019-04-18 0.9.6
2019-01-19 0.9.5
2018-12-11 0.9.4
2018-10-24 0.9.3
2018-08-24 0.9.2
2017-09-04 0.9.1
2016-11-10 0.9.0
Title: A Computational Tool for Astrochronology
Description: Routines for astrochronologic testing, astronomical time scale construction, and time series analysis <doi:10.1016/j.earscirev.2018.11.015>. Also included are a range of statistical analysis and modeling routines that are relevant to time scale development and paleoclimate analysis.
Author: Stephen Meyers [aut, cre],
Alberto Malinverno [ctb],
Linda Hinnov [ctb],
Christian Zeeden [ctb],
Huaran Liu [ctb],
Vincent Moron [ctb],
Michel Crucifix [ctb]
Maintainer: Stephen Meyers <smeyers@geology.wisc.edu>
Diff between astrochron versions 1.4 dated 2024-09-17 and 1.5 dated 2025-04-28
astrochron-1.4/astrochron/R/FUNCTION-accum_v3.R |only astrochron-1.4/astrochron/R/FUNCTION-ar1_v8.R |only astrochron-1.4/astrochron/R/FUNCTION-ar1etp_v10.R |only astrochron-1.4/astrochron/R/FUNCTION-getData_v8.R |only astrochron-1.4/astrochron/R/FUNCTION-imbrie_v8.R |only astrochron-1.4/astrochron/R/FUNCTION-linterpLH13_v10.R |only astrochron-1.4/astrochron/R/FUNCTION-lowspec_v22.R |only astrochron-1.4/astrochron/R/FUNCTION-mtmML96_v16.R |only astrochron-1.4/astrochron/R/FUNCTION-mtm_v20.R |only astrochron-1.4/astrochron/R/FUNCTION-periodogram_v19.R |only astrochron-1.4/astrochron/R/FUNCTION-prewhiteAR1_v5.R |only astrochron-1.4/astrochron/R/FUNCTION-resample_v6.R |only astrochron-1.4/astrochron/R/FUNCTION-surrogateCor_v9.R |only astrochron-1.4/astrochron/R/FUNCTION-testPrecession_v11.R |only astrochron-1.4/astrochron/R/FUNCTION-testTilt_v11.R |only astrochron-1.4/astrochron/R/FUNCTION-timeOptSim_v10.R |only astrochron-1.4/astrochron/R/FUNCTION-timeOptTemplateSim_v8.R |only astrochron-1.5/astrochron/DESCRIPTION | 8 - astrochron-1.5/astrochron/MD5 | 71 +++++------ astrochron-1.5/astrochron/NEWS | 20 ++- astrochron-1.5/astrochron/R/FUNCTION-accum_v4.R |only astrochron-1.5/astrochron/R/FUNCTION-ar1_v9.R |only astrochron-1.5/astrochron/R/FUNCTION-ar1etp_v11.R |only astrochron-1.5/astrochron/R/FUNCTION-getData_v9.R |only astrochron-1.5/astrochron/R/FUNCTION-imbrie_v9.R |only astrochron-1.5/astrochron/R/FUNCTION-linterpLH13_v11.R |only astrochron-1.5/astrochron/R/FUNCTION-lowspec_v23.R |only astrochron-1.5/astrochron/R/FUNCTION-mtmML96_v18.R |only astrochron-1.5/astrochron/R/FUNCTION-mtm_v21.R |only astrochron-1.5/astrochron/R/FUNCTION-periodogram_v21.R |only astrochron-1.5/astrochron/R/FUNCTION-prewhiteAR1_v6.R |only astrochron-1.5/astrochron/R/FUNCTION-resample_v7.R |only astrochron-1.5/astrochron/R/FUNCTION-surrogateCor_v10.R |only astrochron-1.5/astrochron/R/FUNCTION-testPrecession_v12.R |only astrochron-1.5/astrochron/R/FUNCTION-testTilt_v12.R |only astrochron-1.5/astrochron/R/FUNCTION-timeOptSim_v11.R |only astrochron-1.5/astrochron/R/FUNCTION-timeOptTemplateSim_v9.R |only astrochron-1.5/astrochron/R/startupMessage.R | 4 astrochron-1.5/astrochron/man/accum.Rd | 3 astrochron-1.5/astrochron/man/ar1etp.Rd | 2 astrochron-1.5/astrochron/man/astrochron-package.Rd | 4 astrochron-1.5/astrochron/man/bicoherence.Rd | 6 astrochron-1.5/astrochron/man/getData.Rd | 5 astrochron-1.5/astrochron/man/imbrie.Rd | 3 astrochron-1.5/astrochron/man/linterpLH13.Rd | 3 astrochron-1.5/astrochron/man/mtmML96.Rd | 2 astrochron-1.5/astrochron/man/periodogram.Rd | 2 astrochron-1.5/astrochron/man/resample.Rd | 3 astrochron-1.5/astrochron/man/testPrecession.Rd | 4 astrochron-1.5/astrochron/man/testTilt.Rd | 15 +- astrochron-1.5/astrochron/man/timeOptTemplatePlot.Rd | 22 +++ astrochron-1.5/astrochron/man/timeOptTemplateSim.Rd | 13 -- astrochron-1.5/astrochron/src/imbrie_R.f |only astrochron-1.5/astrochron/src/init.c | 3 54 files changed, 113 insertions(+), 80 deletions(-)
Title: Relationship-Based Mixed-Effects Models
Description: Fit relationship-based and customized mixed-effects models with complex variance-covariance structures using the 'lme4' machinery. The core computational algorithms are implemented using the
'Eigen' 'C++' library for numerical linear algebra and 'RcppEigen' 'glue'.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between lme4breeding versions 1.0.50 dated 2025-01-17 and 1.0.60 dated 2025-04-28
ChangeLog | 7 + DESCRIPTION | 8 - MD5 | 46 ++++----- R/AllClass.R | 4 R/funs.R | 82 +++++++++++----- R/plottingFuns.R | 2 R/utils.R | 167 +++++++++++++++++--------------- inst/doc/lmebreed.gxe.R | 9 - inst/doc/lmebreed.gxe.Rmd | 9 - inst/doc/lmebreed.gxe.html | 17 +-- inst/doc/lmebreed.qg.R | 57 +---------- inst/doc/lmebreed.qg.Rmd | 57 +---------- inst/doc/lmebreed.qg.html | 229 ++++++++++++++++++--------------------------- man/DT_cpdata.Rd | 30 +++-- man/DT_example.Rd | 5 man/DT_gryphon.Rd | 5 man/DT_polyploid.Rd | 5 man/DT_rice.Rd | 11 -- man/DT_wheat.Rd | 11 -- man/build.HMM.Rd | 16 ++- man/getMME.Rd | 16 +-- man/lmebreed.Rd | 42 ++++++-- vignettes/lmebreed.gxe.Rmd | 9 - vignettes/lmebreed.qg.Rmd | 57 +---------- 24 files changed, 397 insertions(+), 504 deletions(-)
Title: Fast Approximation of Time-Varying Infectious Disease
Transmission Rates
Description: A fast method for approximating time-varying infectious disease
transmission rates from disease incidence time series and other
data, based on a discrete time approximation of an SEIR model, as
analyzed in Jagan et al. (2020) <doi:10.1371/journal.pcbi.1008124>.
Author: Mikael Jagan [aut, cre]
Maintainer: Mikael Jagan <jaganmn@mcmaster.ca>
Diff between fastbeta versions 0.3.2 dated 2025-03-24 and 0.4.0 dated 2025-04-28
fastbeta-0.3.2/fastbeta/man/seir.canonical.Rd |only fastbeta-0.4.0/fastbeta/DESCRIPTION | 8 - fastbeta-0.4.0/fastbeta/MD5 | 15 + fastbeta-0.4.0/fastbeta/NAMESPACE | 4 fastbeta-0.4.0/fastbeta/R/aoi.R |only fastbeta-0.4.0/fastbeta/R/seir.R | 207 -------------------------- fastbeta-0.4.0/fastbeta/build/partial.rdb |binary fastbeta-0.4.0/fastbeta/inst/NEWS.Rd | 18 ++ fastbeta-0.4.0/fastbeta/man/seir.Rd | 7 fastbeta-0.4.0/fastbeta/man/sir.aoi.Rd |only 10 files changed, 35 insertions(+), 224 deletions(-)
Title: Computes R Squared for Mixed (Multilevel) Models
Description: The model R squared and semi-partial R squared for the linear and
generalized linear mixed model (LMM and GLMM) are computed with confidence
limits. The R squared measure from Edwards et.al (2008) <DOI:10.1002/sim.3429>
is extended to the GLMM using penalized quasi-likelihood (PQL) estimation
(see Jaeger et al. 2016 <DOI:10.1080/02664763.2016.1193725>). Three methods
of computation are provided and described as follows. First, The
Kenward-Roger approach. Due to some inconsistency between the 'pbkrtest'
package and the 'glmmPQL' function, the Kenward-Roger approach in the
'r2glmm' package is limited to the LMM. Second, The method introduced
by Nakagawa and Schielzeth (2013) <DOI:10.1111/j.2041-210x.2012.00261.x>
and later extended by Johnson (2014) <DOI:10.1111/2041-210X.12225>.
The 'r2glmm' package only computes marginal R squared for the LMM and does
not generalize the statistic to the GLMM; however, confidence limits and
semi-partial R squared for fixed effect [...truncated...]
Author: Byron Jaeger [aut, cre]
Maintainer: Byron Jaeger <byron.jaeger@gmail.com>
Diff between r2glmm versions 0.1.2 dated 2017-08-05 and 0.1.3 dated 2025-04-28
DESCRIPTION | 17 +-- MD5 | 29 ++--- NEWS.md |only R/cmpR2_Function.R | 17 +-- R/glm_PQL_Function.R | 3 R/r2_sgv_est_Function.R | 6 - R/r2beta_Function.R | 10 - R/r2beta_glmmPQL_Function.R | 15 +- R/r2beta_lme_Function.R | 13 +- R/r2beta_lmerMod_Function.R | 33 +++++- README.md | 226 +++++++++++++++++++++++++++++--------------- man/plot.R2.Rd | 12 +- man/pqlmer.Rd | 2 man/r2beta.Rd | 10 - man/r2dt.Rd | 12 +- tests/testthat/test_R2.R | 30 +++++ 16 files changed, 292 insertions(+), 143 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 11.2 dated 2025-03-25 and 11.3 dated 2025-04-28
DESCRIPTION | 8 - MD5 | 18 +- R/Nowcast.R | 3 R/Partial_Moments.R | 202 ++++++++++++++++++++---------- README.md | 4 inst/doc/NNSvignette_Partial_Moments.html | 2 man/NNS.nowcast.Rd | 1 src/fast_lm.cpp | 79 +++++++++-- tests/testthat/Rplots.pdf |binary tests/testthat/test_Partial_Moments.R | 2 10 files changed, 222 insertions(+), 97 deletions(-)
Title: High Density Genetic Linkage Mapping using Multidimensional
Scaling
Description: Estimate genetic linkage maps for markers on a single chromosome (or in a single linkage group) from pairwise recombination fractions or intermarker distances using weighted metric multidimensional scaling. The methods are suitable for autotetraploid as well as diploid populations. Options for assessing the fit to a known map are also provided. Methods are discussed in detail in Preedy and Hackett (2016) <doi:10.1007/s00122-016-2761-8>.
Author: Katharine F. Preedy [aut],
Christine A. Hackett [aut],
Bram Boskamp [cre]
Maintainer: Bram Boskamp <bram.boskamp@bioss.ac.uk>
Diff between MDSMap versions 1.1 dated 2018-08-09 and 1.3 dated 2025-04-28
DESCRIPTION | 31 MD5 | 62 NAMESPACE | 54 R/MDSmap-package.R | 4 R/mds.R | 139 build/vignette.rds |binary inst/doc/MDSMap.pdf |binary inst/extdata/lgV.txt |56408 ++++++++++++++++++++--------------------- man/MDSMap-package.Rd | 70 man/calc.maps.pc.Rd | 206 man/calc.maps.sphere.Rd | 220 man/calc.nnfit.Rd | 78 man/calc.nnfit.from.file.Rd | 163 man/calc.nnfit.loci.Rd | 72 man/calc.nswaps.Rd | 64 man/calc.pair.rf.lod.Rd | 114 man/convert.polar.Rd | 80 man/dmap.Rd | 56 man/dmap.check.Rd | 62 man/estimate.map.Rd | 264 man/get.dist.loci.Rd | 54 man/get.nearest.informative.Rd | 48 man/invert.map.Rd | 50 man/lgI.txt.Rd | 84 man/lgV.txt.Rd | 84 man/map.to.interval.Rd | 86 man/meandist.from.truth.Rd | 92 man/plot.pcmap.Rd | 105 man/plot.pcmap3d.Rd | 125 man/plot.spheremap.Rd | 116 man/recalc.nnfit.from.map.Rd | 72 man/sim.bc.rflod.file.Rd | 82 32 files changed, 29602 insertions(+), 29543 deletions(-)
Title: Annual Regional Database of the European Commission (ARDECO)
Description: A set of functions to access the 'ARDECO' (Annual Regional Database
of the European Commission) data directly from the official ARDECO public
repository through the exploitation of the 'ARDECO' APIs.
The APIs are completely transparent to the user and the provided functions
provide a direct access to the 'ARDECO' data.
The 'ARDECO' database is a collection of variables related to demography,
employment, labour market, domestic product, capital formation.
Each variable can be exposed in one or more units of measure as well as
refers to total values plus additional dimensions like economic sectors, gender,
age classes. Data can be also aggregated at country level according
to the tercet classes as defined by EUROSTAT.
The description of the 'ARDECO' database can be found at the following URL
<https://urban.jrc.ec.europa.eu/ardeco>.
Author: Carmelo Attardo [cre],
Giuseppe Bucciarelli [aut],
European Commission, JRC [cph]
Maintainer: Carmelo Attardo <carmelo.attardo@ec.europa.eu>
Diff between ARDECO versions 2.2.1 dated 2025-04-18 and 2.2.2 dated 2025-04-28
ARDECO-2.2.1/ARDECO/inst/doc/introArdeco.R |only ARDECO-2.2.2/ARDECO/DESCRIPTION | 6 ARDECO-2.2.2/ARDECO/MD5 | 14 ARDECO-2.2.2/ARDECO/NEWS | 2 ARDECO-2.2.2/ARDECO/build/vignette.rds |binary ARDECO-2.2.2/ARDECO/inst/doc/introArdeco.Rmd | 422 +++++++++++++++++++-- ARDECO-2.2.2/ARDECO/inst/doc/introArdeco.html | 302 +++++++-------- ARDECO-2.2.2/ARDECO/vignettes/introArdeco.Rmd | 422 +++++++++++++++++++-- ARDECO-2.2.2/ARDECO/vignettes/introArdeco.Rmd.orig |only 9 files changed, 937 insertions(+), 231 deletions(-)
Title: Easily Install and Load 'tesselle' Packages
Description: Easy install and load key packages from the 'tesselle' suite
in a single step. The 'tesselle' suite is a collection of packages for
research and teaching in archaeology. These packages focus on
quantitative analysis methods developed for archaeology. The
'tesselle' packages are designed to work seamlessly together and to
complement general-purpose and other specialized statistical packages.
These packages can be used to explore and analyze common data types in
archaeology: count data, compositional data and chronological data.
Learn more about 'tesselle' at <https://www.tesselle.org>.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between tesselle versions 1.5.0 dated 2024-12-10 and 1.6.0 dated 2025-04-28
DESCRIPTION | 34 ++++++++++++++++++++-------------- MD5 | 19 +++++++++++-------- NEWS.md | 9 +++++++++ R/attach.R | 2 +- R/tesselle-internal.R | 5 +++++ R/tesselle-package.R | 2 +- README.md | 27 +++++++++++++-------------- inst/CITATION | 8 ++++---- inst/po |only man/tesselle-package.Rd | 6 +++--- po |only 11 files changed, 67 insertions(+), 45 deletions(-)
Title: Formatted Survey Estimates
Description: Short and understandable commands that generate tabulated,
formatted, and rounded survey estimates. Mostly a wrapper for the
'survey' package (Lumley (2004) <doi:10.18637/jss.v009.i08>
<https://CRAN.R-project.org/package=survey>) that identifies
low-precision estimates using the National Center for Health
Statistics (NCHS) presentation standards (Parker et al. (2017)
<https://www.cdc.gov/nchs/data/series/sr_02/sr02_175.pdf>,
Parker et al. (2023) <doi:10.15620/cdc:124368>).
Author: Alex Strashny [aut, cre]
Maintainer: Alex Strashny <alex.strashny@gmail.com>
Diff between surveytable versions 0.9.6 dated 2025-03-13 and 0.9.7 dated 2025-04-28
DESCRIPTION | 6 MD5 | 50 - NEWS.md | 4 R/set_survey.R | 214 +++--- R/survey_subset.R | 76 +- R/tab.R | 6 R/total.R | 4 R/var_all.R | 64 +- R/var_any.R | 68 +- R/var_case.R | 100 +-- R/var_collapse.R | 62 - R/var_copy.R | 62 - R/var_list.R | 112 +-- R/var_not.R | 52 - R/z_utils.R | 98 +-- README.md | 4 inst/WORDLIST | 1 inst/doc/Advanced-topics.html | 8 inst/doc/Example-National-Ambulatory-Medical-Care-Survey-NAMCS-tables.html | 294 ++++----- inst/doc/Example-Residential-Care-Community-Services-User-NSLTCP-RCC-SU-report.html | 72 +- inst/doc/Printing-HTML.html | 295 ++++----- inst/doc/Printing-PDF.pdf |binary inst/doc/surveytable.Rmd | 2 inst/doc/surveytable.html | 317 +++++----- man/set_survey.Rd | 4 vignettes/surveytable.Rmd | 2 26 files changed, 995 insertions(+), 982 deletions(-)
Title: Working with netCDF for Essential Biodiversity Variables
Description: The concept of Essential Biodiversity Variables (EBV, <https://geobon.org/ebvs/what-are-ebvs/>)
comes with a data structure based on the Network Common Data Form (netCDF).
The 'ebvcube' 'R' package provides functionality to easily create, access and
visualise this data. The EBV netCDFs can be downloaded from the EBV Data
Portal: Christian Langer/ iDiv (2020) <https://portal.geobon.org/>.
Author: Luise Quoss [aut, cre] ,
Nestor Fernandez [aut] ,
Christian Langer [aut] ,
Jose Valdez [aut] ,
Henrique Miguel Pereira [aut]
Maintainer: Luise Quoss <luise.quoss@idiv.de>
Diff between ebvcube versions 0.4.0 dated 2025-03-05 and 0.5.0 dated 2025-04-28
ebvcube-0.4.0/ebvcube/inst/docs/ebvcube_0.4.0.pdf |only ebvcube-0.5.0/ebvcube/DESCRIPTION | 8 ebvcube-0.5.0/ebvcube/MD5 | 32 ebvcube-0.5.0/ebvcube/NEWS.md | 357 - ebvcube-0.5.0/ebvcube/R/ebv_create_taxonomy.R | 2370 +++++----- ebvcube-0.5.0/ebvcube/R/ebv_properties.R | 987 ++-- ebvcube-0.5.0/ebvcube/R/zzz.R | 10 ebvcube-0.5.0/ebvcube/README.md | 40 ebvcube-0.5.0/ebvcube/inst/docs/ebvcube_0.5.0.pdf |only ebvcube-0.5.0/ebvcube/inst/extdata/testdata/id5_taxid.csv | 2 ebvcube-0.5.0/ebvcube/man/EBV-netCDF-properties-class.Rd | 4 ebvcube-0.5.0/ebvcube/man/ebv_create_taxonomy.Rd | 34 ebvcube-0.5.0/ebvcube/tests/testthat/test-ebv-read.R | 156 ebvcube-0.5.0/ebvcube/tests/testthat/test-ebv_create_taxonomy.R | 309 - ebvcube-0.5.0/ebvcube/tests/testthat/test-ebv_manipulate.R | 334 - ebvcube-0.5.0/ebvcube/tests/testthat/test-plots.R | 212 ebvcube-0.5.0/ebvcube/tests/testthat/test-resample.R | 70 ebvcube-0.5.0/ebvcube/tests/testthat/test-write.R | 129 18 files changed, 2557 insertions(+), 2497 deletions(-)
Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests.
Author: Gunter Maris [aut],
Timo Bechger [aut],
Jesse Koops [aut, cre],
Ivailo Partchev [aut]
Maintainer: Jesse Koops <jesse.koops@cito.nl>
Diff between dexter versions 1.6.0 dated 2025-04-07 and 1.6.1 dated 2025-04-28
dexter-1.6.0/dexter/tests/testthat/sufstats_dich.RData |only dexter-1.6.0/dexter/tests/testthat/sufstats_poly.RData |only dexter-1.6.0/dexter/tests/testthat/verbAggression.db |only dexter-1.6.0/dexter/tests/testthat/verbal_oplm |only dexter-1.6.1/dexter/DESCRIPTION | 6 dexter-1.6.1/dexter/MD5 | 88 ++--- dexter-1.6.1/dexter/NAMESPACE | 13 dexter-1.6.1/dexter/NEWS.md | 14 dexter-1.6.1/dexter/R/ability.R | 15 dexter-1.6.1/dexter/R/database.R | 27 - dexter-1.6.1/dexter/R/dexter.R | 26 - dexter-1.6.1/dexter/R/equating.R | 2 dexter-1.6.1/dexter/R/fit_enorm.R | 56 --- dexter-1.6.1/dexter/R/misc.R | 34 + dexter-1.6.1/dexter/R/misc_anon.R | 1 dexter-1.6.1/dexter/R/oplike.R | 5 dexter-1.6.1/dexter/R/param.R | 75 +++- dexter-1.6.1/dexter/R/plots.R | 174 +++++----- dexter-1.6.1/dexter/R/resp_data.R | 9 dexter-1.6.1/dexter/R/standards.R | 2 dexter-1.6.1/dexter/R/suf_stats.R | 38 ++ dexter-1.6.1/dexter/inst/doc/DIF_vignette.html | 4 dexter-1.6.1/dexter/inst/doc/Equating.html | 10 dexter-1.6.1/dexter/inst/doc/Plausible_Values.html | 16 dexter-1.6.1/dexter/inst/doc/Test_Individual_differences.html | 14 dexter-1.6.1/dexter/inst/doc/dexter.html | 54 +-- dexter-1.6.1/dexter/inst/doc/profile-plots.html | 4 dexter-1.6.1/dexter/man/plot.enorm.Rd | 8 dexter-1.6.1/dexter/src/ability.cpp | 39 +- dexter-1.6.1/dexter/tests/testthat/setup.R |only dexter-1.6.1/dexter/tests/testthat/test_ability.R | 64 +++ dexter-1.6.1/dexter/tests/testthat/test_data_selection.R | 2 dexter-1.6.1/dexter/tests/testthat/test_database.R | 19 - dexter-1.6.1/dexter/tests/testthat/test_elsym.R | 8 dexter-1.6.1/dexter/tests/testthat/test_enorm.R | 19 - dexter-1.6.1/dexter/tests/testthat/test_interaction.R | 2 dexter-1.6.1/dexter/tests/testthat/test_latent_cor.R | 2 dexter-1.6.1/dexter/tests/testthat/test_p2p.R | 2 dexter-1.6.1/dexter/tests/testthat/test_plausible_scores.R | 2 dexter-1.6.1/dexter/tests/testthat/test_plausible_values.R | 26 - dexter-1.6.1/dexter/tests/testthat/test_profiles.R | 2 dexter-1.6.1/dexter/tests/testthat/test_theta.R | 2 dexter-1.6.1/dexter/tests/testthat/testdata |only 43 files changed, 517 insertions(+), 367 deletions(-)
Title: Leveraging Experiment Lines to Data Analytics
Description: The natural increase in the complexity of current research experiments and data demands better tools to enhance productivity in Data Analytics. The package is a framework designed to address the modern challenges in data analytics workflows. The package is inspired by Experiment Line concepts. It aims to provide seamless support for users in developing their data mining workflows by offering a uniform data model and method API. It enables the integration of various data mining activities, including data preprocessing, classification, regression, clustering, and time series prediction. It also offers options for hyper-parameter tuning and supports integration with existing libraries and languages. Overall, the package provides researchers with a comprehensive set of functionalities for data science, promoting ease of use, extensibility, and integration with various tools and libraries. Information on Experiment Line is based on Ogasawara et al. (2009) <doi:10.1007/978-3-642-02279-1_2 [...truncated...]
Author: Eduardo Ogasawara [aut, ths, cre]
,
Antonio Castro [aut, ctb],
Diego Salles [aut, ths],
Janio Lima [aut, ths],
Lucas Tavares [aut, ths],
Diego Carvalho [aut, ths],
Eduardo Bezerra [aut, ths],
Rafaelli Coutinho [aut, ths],
Federal Center for Technolog [...truncated...]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between daltoolbox versions 1.1.737 dated 2025-04-21 and 1.1.747 dated 2025-04-28
DESCRIPTION | 19 +++-- MD5 | 142 ++++++++++++++++++++++---------------------- NAMESPACE | 4 - R/autoenc_adv_e.R | 9 +- R/autoenc_adv_ed.R | 9 +- R/autoenc_conv_e.R | 9 +- R/autoenc_conv_ed.R | 5 - R/autoenc_denoise_e.R | 9 +- R/autoenc_denoise_ed.R | 9 +- R/autoenc_e.R | 9 +- R/autoenc_ed.R | 9 +- R/autoenc_lstm_e.R | 9 +- R/autoenc_lstm_ed.R | 9 +- R/autoenc_stacked_e.R | 9 +- R/autoenc_stacked_ed.R | 9 +- R/autoenc_variational_e.R | 9 +- R/autoenc_variational_ed.R | 9 +- R/cla_classification.R | 2 R/cla_dtree.R | 4 - R/cla_knn.R | 4 - R/cla_majority.R | 4 - R/cla_mlp.R | 4 - R/cla_nb.R | 4 - R/cla_rf.R | 4 - R/cla_svm.R | 4 - R/cla_tune.R | 3 R/clu_clusterer.R | 8 +- R/clu_dbscan.R | 4 - R/clu_kmeans.R | 2 R/clu_pam.R | 2 R/clu_tune.R | 1 R/dal_base.R | 7 +- R/dal_learner.R | 7 -- R/dal_predictor.R | 4 - R/dal_tune.R | 2 R/reg_dtree.R | 4 - R/reg_knn.R | 3 R/reg_mlp.R | 4 - R/reg_regression.R | 2 R/reg_rf.R | 4 - R/reg_svm.R | 4 - R/reg_tune.R | 3 R/trans_categ_mapping.R | 2 R/trans_dt_pca.R | 5 - R/trans_fit_curvature_max.R | 2 R/trans_fit_curvature_min.R | 2 R/trans_norm_minmax.R | 7 -- R/trans_norm_zscore.R | 6 - R/trans_outliers.R | 4 - R/trans_sample.R | 4 - R/trans_sample_random.R | 4 - R/trans_sample_strat.R | 4 - R/trans_smoothing.R | 6 - R/trans_smoothing_cluster.R | 2 R/trans_smoothing_freq.R | 2 R/trans_smoothing_inter.R | 2 R/trans_transform.R | 6 - R/ts_arima.R | 12 ++- R/ts_conv1d.R | 16 ---- R/ts_elm.R | 4 - R/ts_knn.R | 4 - R/ts_lstm.R | 18 ----- R/ts_mlp.R | 2 R/ts_norm_an.R | 6 - R/ts_norm_diff.R | 6 - R/ts_norm_gminmax.R | 6 - R/ts_norm_swminmax.R | 6 - R/ts_reg.R | 5 - R/ts_regsw.R | 6 - R/ts_rf.R | 4 - R/ts_svm.R | 4 - R/ts_tune.R | 2 72 files changed, 256 insertions(+), 284 deletions(-)
Title: Prediction Explanation with Dependence-Aware Shapley Values
Description: Complex machine learning models are often hard to interpret. However, in
many situations it is crucial to understand and explain why a model made a specific
prediction. Shapley values is the only method for such prediction explanation framework
with a solid theoretical foundation. Previously known methods for estimating the Shapley
values do, however, assume feature independence. This package implements methods which accounts for any feature
dependence, and thereby produces more accurate estimates of the true Shapley values.
An accompanying 'Python' wrapper ('shaprpy') is available through the GitHub repository.
Author: Martin Jullum [cre, aut] ,
Lars Henry Berge Olsen [aut] ,
Annabelle Redelmeier [aut],
Jon Lachmann [aut] ,
Nikolai Sellereite [aut] ,
Anders Loeland [ctb],
Jens Christian Wahl [ctb],
Camilla Lingjaerde [ctb],
Norsk Regnesentral [cph, fnd]
Maintainer: Martin Jullum <Martin.Jullum@nr.no>
Diff between shapr versions 1.0.3 dated 2025-04-01 and 1.0.4 dated 2025-04-28
DESCRIPTION | 10 MD5 | 261 NEWS.md | 35 R/approach_categorical.R | 500 R/approach_copula.R | 346 R/approach_ctree.R | 602 R/approach_empirical.R | 1218 - R/approach_gaussian.R | 346 R/approach_regression_separate.R | 1010 - R/approach_regression_surrogate.R | 6 R/approach_timeseries.R | 2 R/approach_vaeac.R | 310 R/approach_vaeac_torch_modules.R | 4093 +++--- R/asymmetric_and_casual_Shapley.R | 1042 - R/check_convergence.R | 16 R/cli.R | 277 R/compute_estimates.R | 77 R/compute_vS.R | 608 R/explain.R | 52 R/explain_forecast.R | 910 - R/finalize_explanation.R | 459 R/get_feature_specs.R | 144 R/get_predict_model.R | 173 R/model.R | 351 R/model_ar.R | 64 R/model_arima.R | 180 R/model_glm.R | 70 R/model_lm.R | 64 R/model_mgcv_gam.R | 82 R/model_ranger.R | 175 R/model_workflow.R | 62 R/model_xgboost.R | 102 R/plot.R | 287 R/prepare_next_iteration.R | 182 R/print_iter.R | 14 R/setup.R | 3558 ++--- R/shapley_setup.R | 473 R/zzz.R | 339 README.md | 588 inst/CITATION | 52 inst/doc/asymmetric_causal.Rmd | 4232 +++--- inst/doc/asymmetric_causal.html | 1706 +- inst/doc/general_usage.Rmd | 5005 ++++---- inst/doc/general_usage.html | 1658 +- inst/doc/regression.Rmd | 6238 +++++----- inst/doc/regression.html | 3704 +++-- inst/doc/vaeac.Rmd | 2480 ++- inst/doc/vaeac.html | 1004 - man/check_verbose.Rd | 9 man/cli_iter.Rd | 9 man/cli_startup.Rd | 9 man/cli_topline.Rd |only man/compute_vS.Rd | 6 man/create_coalition_table.Rd | 45 man/create_ctree.Rd | 2 man/exact_coalition_table.Rd | 1 man/explain.Rd | 46 man/explain_forecast.Rd | 11 man/get_extra_comp_args_default.Rd | 15 man/plot.shapr.Rd | 178 man/plot_SV_several_approaches.Rd | 2 man/regression.check_namespaces.Rd | 2 man/regression.train_model.Rd | 9 man/sample_coalition_table.Rd | 63 man/setup.Rd | 9 man/vaeac_check_cuda.Rd | 18 man/vaeac_check_epoch_values.Rd | 19 man/vaeac_check_parameters.Rd | 9 man/vaeac_check_save_parameters.Rd | 19 man/vaeac_get_mask_generator_name.Rd | 9 man/vaeac_impute_missing_entries.Rd | 9 man/vaeac_train_model.Rd | 9 man/vaeac_train_model_auxiliary.Rd | 9 man/vaeac_train_model_continue.Rd | 9 tests/testthat/helper-ar-arima.R | 2 tests/testthat/test-asymmetric-causal-output.R | 1096 - tests/testthat/test-asymmetric-causal-setup.R | 784 - tests/testthat/test-forecast-setup.R | 1478 +- tests/testthat/test-iterative-output.R | 403 tests/testthat/test-iterative-setup.R | 863 - tests/testthat/test-plot.R | 631 - tests/testthat/test-regression-output.R | 640 - tests/testthat/test-regression-setup.R | 23 tests/testthat/test-regular-output.R | 1167 - tests/testthat/test-regular-setup.R | 68 tests/testthat/test-semi-deterministic-output.R |only tests/testthat/test-semi-deterministic-setup.R |only vignettes/asymmetric_causal.Rmd | 4232 +++--- vignettes/figure_asymmetric_causal/compare_plots-1.png |binary vignettes/figure_asymmetric_causal/explanation_asym_cau_SV-1.png |binary vignettes/figure_asymmetric_causal/explanation_asym_cau_beeswarm-1.png |binary vignettes/figure_asymmetric_causal/explanation_asym_con_beeswarm-1.png |binary vignettes/figure_asymmetric_causal/explanation_sym_cau_beeswarm-1.png |binary vignettes/figure_asymmetric_causal/explanation_sym_con_SV-1.png |binary vignettes/figure_asymmetric_causal/explanation_sym_con_beeswarm-1.png |binary vignettes/figure_asymmetric_causal/explanation_sym_mar_beeswarm-1.png |binary vignettes/figure_asymmetric_causal/n_coalitions_plot_SV-1.png |binary vignettes/figure_asymmetric_causal/n_coalitions_plot_beeswarm-1.png |binary vignettes/figure_asymmetric_causal/scatter_plots-1.png |binary vignettes/figure_asymmetric_causal/sym_and_asym_Shapley_values-1.png |binary vignettes/figure_asymmetric_causal/two_dates_1-1.png |binary vignettes/figure_asymmetric_causal/two_dates_2-1.png |binary vignettes/figure_asymmetric_causal/two_dates_3-1.png |binary vignettes/figure_general_usage/combined-1-1.png |binary vignettes/figure_general_usage/custom-1.png |binary vignettes/figure_general_usage/custom-2.png |binary vignettes/figure_general_usage/factor-1.png |binary vignettes/figure_general_usage/group-1.png |binary vignettes/figure_general_usage/plot-beeswarm-1.png |binary vignettes/figure_general_usage/plot-scatter-1.png |binary vignettes/figure_general_usage/plot-waterfall-1.png |binary vignettes/figure_general_usage/setup-2-1.png |binary vignettes/figure_regression/MSEv-sum-1.png |binary vignettes/figure_regression/MSEv-sum-2-1.png |binary vignettes/figure_regression/SV-sum-1.png |binary vignettes/figure_regression/SV-sum-2-1.png |binary vignettes/figure_regression/SV-sum-2.png |binary vignettes/figure_regression/SV-sum-3.png |binary vignettes/figure_regression/dt-cv-plot-1.png |binary vignettes/figure_regression/mixed-plot-1.png |binary vignettes/figure_regression/mixed-plot-2-1.png |binary vignettes/figure_regression/mixed-plot-3-1.png |binary vignettes/figure_regression/mixed-plot-4-1.png |binary vignettes/figure_regression/ppr-plot-1.png |binary vignettes/figure_regression/surrogate-plot-1.png |binary vignettes/figure_vaeac/check-n_coalitions-1.png |binary vignettes/figure_vaeac/continue-training-2.png |binary vignettes/figure_vaeac/continue-training-5.png |binary vignettes/figure_vaeac/first-vaeac-plots-1.png |binary vignettes/figure_vaeac/vaeac-grouping-of-features-1.png |binary vignettes/general_usage.Rmd | 5005 ++++---- vignettes/regression.Rmd | 6238 +++++----- vignettes/vaeac.Rmd | 2480 ++- 133 files changed, 37098 insertions(+), 33705 deletions(-)
Title: Efficient Monitoring of Global Biodiversity Portfolios
Description: Biodiversity areas, especially primary forest, serve a
multitude of functions for local economy, regional functionality of
the ecosystems as well as the global health of our planet. Recently,
adverse changes in human land use practices and climatic responses to
increased greenhouse gas emissions, put these biodiversity areas under
a variety of different threats. The present package helps to analyse a
number of biodiversity indicators based on freely available
geographical datasets. It supports computational efficient routines
that allow the analysis of potentially global biodiversity portfolios.
The primary use case of the package is to support evidence based
reporting of an organization's effort to protect biodiversity areas
under threat and to identify regions were intervention is most duly
needed.
Author: Darius A. Goergen [aut] ,
Om Prakash Bhandari [aut],
Andreas Petutschnig [ctb] ,
Sven Bergtold [ctb, cre],
Zivan Karaman [ctb] ,
MAPME-Initiative [cph, fnd]
Maintainer: Sven Bergtold <sven.bergtold@gmail.com>
Diff between mapme.biodiversity versions 0.9.3 dated 2024-10-21 and 0.9.4 dated 2025-04-28
mapme.biodiversity-0.9.3/mapme.biodiversity/tests/testthat/_snaps/calc_precipitation_chirps.md |only mapme.biodiversity-0.9.4/mapme.biodiversity/DESCRIPTION | 33 mapme.biodiversity-0.9.4/mapme.biodiversity/MD5 | 153 - mapme.biodiversity-0.9.4/mapme.biodiversity/NEWS.md | 722 ++--- mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_ecoregion.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_exposed_population_acled.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_exposed_population_ucdp.R | 10 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_fatalities_ucdp.R | 8 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_gsw_occurrence.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_gsw_recurrence.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_ipbes_biomes.R | 4 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_precipitation_wc.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_traveltime.R | 4 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_traveltime_2000.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_treecover_area_and_emissions.R | 4 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_treecoverloss_emissions.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/calc_tri.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/chunking.R | 58 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_acled.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_biodiversity_intactness_index.R | 9 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_chelsa.R | 10 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_esalandcover.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_fritz_et_al.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_gfw_lossyear.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_gmw.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_gsw.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_gsw_time_series.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_hfp.R | 15 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_iucn.R | 3 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_key_biodiversity_areas.R | 31 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_mcd64A1.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_nelson_et_al.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_soilgrids.R | 10 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_ucdp_ged.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/get_worldclim.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/portfolio.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/register.R | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/R/spatial-utils.R | 73 mapme.biodiversity-0.9.4/mapme.biodiversity/R/utils.R | 4 mapme.biodiversity-0.9.4/mapme.biodiversity/README.md | 169 - mapme.biodiversity-0.9.4/mapme.biodiversity/build/partial.rdb |binary mapme.biodiversity-0.9.4/mapme.biodiversity/build/vignette.rds |binary mapme.biodiversity-0.9.4/mapme.biodiversity/inst/WORDLIST | 329 +- mapme.biodiversity-0.9.4/mapme.biodiversity/inst/doc/quickstart.R | 226 - mapme.biodiversity-0.9.4/mapme.biodiversity/inst/doc/quickstart.Rmd | 234 - mapme.biodiversity-0.9.4/mapme.biodiversity/inst/doc/quickstart.html | 1324 +++++----- mapme.biodiversity-0.9.4/mapme.biodiversity/inst/doc/terminology.R | 28 mapme.biodiversity-0.9.4/mapme.biodiversity/inst/doc/terminology.html | 660 ++-- mapme.biodiversity-0.9.4/mapme.biodiversity/man/acled.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/biodiversity_intactness_index_resource.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/calc_exposed_population_acled.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/check_available_years.Rd | 4 mapme.biodiversity-0.9.4/mapme.biodiversity/man/chelsa.Rd | 4 mapme.biodiversity-0.9.4/mapme.biodiversity/man/esalandcover.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/exposed_population_ucdp.Rd | 10 mapme.biodiversity-0.9.4/mapme.biodiversity/man/fatalities_ucpd.Rd | 8 mapme.biodiversity-0.9.4/mapme.biodiversity/man/fritz_et_al.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/gmw.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/humanfootprint_resource.Rd | 8 mapme.biodiversity-0.9.4/mapme.biodiversity/man/iucn.Rd | 1 mapme.biodiversity-0.9.4/mapme.biodiversity/man/make_footprints.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/mapme.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/mcd64a1.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/nelson_et_al.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/precipitation_wc.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/soilgrids.Rd | 10 mapme.biodiversity-0.9.4/mapme.biodiversity/man/traveltime.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/treecover_area_and_emissions.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/treecoverloss_emissions.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/man/ucdp_ged.Rd | 2 mapme.biodiversity-0.9.4/mapme.biodiversity/tests/testthat/test-calc_indicator.R | 135 - mapme.biodiversity-0.9.4/mapme.biodiversity/tests/testthat/test-calc_precipitation_chirps.R | 78 mapme.biodiversity-0.9.4/mapme.biodiversity/tests/testthat/test-chunking.R | 13 mapme.biodiversity-0.9.4/mapme.biodiversity/tests/testthat/test-get_biodiversity_intactness_index.R | 6 mapme.biodiversity-0.9.4/mapme.biodiversity/tests/testthat/test-get_chelsa.R |only mapme.biodiversity-0.9.4/mapme.biodiversity/tests/testthat/test-get_chirps.R | 22 mapme.biodiversity-0.9.4/mapme.biodiversity/tests/testthat/test-get_resources.R | 4 mapme.biodiversity-0.9.4/mapme.biodiversity/tests/testthat/test-spatial-utils.R |only mapme.biodiversity-0.9.4/mapme.biodiversity/vignettes/quickstart.Rmd | 234 - 79 files changed, 2367 insertions(+), 2363 deletions(-)
More information about mapme.biodiversity at CRAN
Permanent link
Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating
grouped date classes.
Author: Tim Taylor [aut, cre]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between grates versions 1.4.3 dated 2025-03-10 and 1.5.0 dated 2025-04-28
DESCRIPTION | 11 +++--- MD5 | 57 ++++++++++++++++---------------- NAMESPACE | 14 +++++++ NEWS.md | 14 +++++++ R/accessors.R | 27 +++++---------- R/epiweek-class.R | 24 ++++++++----- R/int_period-class.R | 6 +++ R/isoweek-class.R | 24 ++++++++----- R/month-class.R | 17 +++++---- R/month-utils.R | 9 +---- R/period-class.R | 8 +++- R/utils.R | 11 ------ R/year-class.R | 8 +++- R/yearmonth-class.R | 19 ++++++---- R/yearquarter-class.R | 8 +++- R/yearweek-class.R | 67 ++++++++++++++++++++++---------------- inst/doc/grates.Rmd | 1 inst/doc/grates.html | 22 ++++++------ man/grouped_date_accessors.Rd | 3 - tests/testthat/test-epiweek.R | 1 tests/testthat/test-int_period.R | 1 tests/testthat/test-isoweek.R | 1 tests/testthat/test-month.R | 1 tests/testthat/test-period.R | 2 + tests/testthat/test-refactoring.R |only tests/testthat/test-year.R | 2 + tests/testthat/test-yearmonth.R | 1 tests/testthat/test-yearquarter.R | 1 tests/testthat/test-yearweek.R | 1 vignettes/grates.Rmd | 1 30 files changed, 216 insertions(+), 146 deletions(-)
More information about forensicpopdata at CRAN
Permanent link
Title: The Ultimate Tool for Reading Data in Bulk
Description: Designed to simplify and streamline the process of reading
and processing large volumes of data in R, this package offers a
collection of functions tailored for bulk data operations. It enables
users to efficiently read multiple sheets from Microsoft Excel and
Google Sheets workbooks, as well as various CSV files from a
directory. The data is returned as organized data frames, facilitating
further analysis and manipulation. Ideal for handling extensive data
sets or batch processing tasks, bulkreadr empowers users to manage
data in bulk effortlessly, saving time and effort in data preparation
workflows. Additionally, the package seamlessly works with labelled
data from SPSS and Stata.
Author: Ezekiel Ogundepo [aut, cre] ,
Ernest Fokoue [ctb] ,
Golibe Ezeechesi [ctb],
Fatimo Adebanjo [ctb],
Isaac Ajao [ctb]
Maintainer: Ezekiel Ogundepo <gbganalyst@gmail.com>
Diff between bulkreadr versions 1.1.1 dated 2024-05-26 and 1.2.0 dated 2025-04-28
bulkreadr-1.1.1/bulkreadr/inst/doc/bulkreadr.R |only bulkreadr-1.1.1/bulkreadr/inst/doc/bulkreadr.Rmd |only bulkreadr-1.1.1/bulkreadr/inst/doc/bulkreadr.html |only bulkreadr-1.1.1/bulkreadr/vignettes/bulkreadr.Rmd |only bulkreadr-1.2.0/bulkreadr/DESCRIPTION | 10 bulkreadr-1.2.0/bulkreadr/MD5 | 61 - bulkreadr-1.2.0/bulkreadr/NAMESPACE | 4 bulkreadr-1.2.0/bulkreadr/NEWS.md | 148 ++-- bulkreadr-1.2.0/bulkreadr/R/bulkreadr-package.R | 58 - bulkreadr-1.2.0/bulkreadr/R/fill_missing_values.R | 262 +++---- bulkreadr-1.2.0/bulkreadr/R/onload.R | 6 bulkreadr-1.2.0/bulkreadr/R/read_excel_workbook.R | 14 bulkreadr-1.2.0/bulkreadr/R/read_gsheets.R | 12 bulkreadr-1.2.0/bulkreadr/R/utils.R | 126 +-- bulkreadr-1.2.0/bulkreadr/R/write_excel_sheets_to_csv.R |only bulkreadr-1.2.0/bulkreadr/build/vignette.rds |binary bulkreadr-1.2.0/bulkreadr/inst/doc/intro-to-bulkreadr.R |only bulkreadr-1.2.0/bulkreadr/inst/doc/intro-to-bulkreadr.Rmd |only bulkreadr-1.2.0/bulkreadr/inst/doc/intro-to-bulkreadr.html |only bulkreadr-1.2.0/bulkreadr/inst/doc/labelled-data.Rmd | 256 +++---- bulkreadr-1.2.0/bulkreadr/inst/doc/labelled-data.html | 2 bulkreadr-1.2.0/bulkreadr/inst/doc/other-functions.R | 19 bulkreadr-1.2.0/bulkreadr/inst/doc/other-functions.Rmd | 352 +++++----- bulkreadr-1.2.0/bulkreadr/inst/doc/other-functions.html | 94 +- bulkreadr-1.2.0/bulkreadr/man/fill_missing_values.Rd | 19 bulkreadr-1.2.0/bulkreadr/man/pipe.Rd | 40 - bulkreadr-1.2.0/bulkreadr/man/read_csv_files_from_dir.Rd | 140 +-- bulkreadr-1.2.0/bulkreadr/man/read_excel_workbook.Rd | 2 bulkreadr-1.2.0/bulkreadr/man/read_gsheets.Rd | 3 bulkreadr-1.2.0/bulkreadr/man/write_excel_sheets_to_csv.Rd |only bulkreadr-1.2.0/bulkreadr/tests/testthat/extdata/airquality_mean.csv | 308 ++++---- bulkreadr-1.2.0/bulkreadr/tests/testthat/test-fill_missing_values.R | 24 bulkreadr-1.2.0/bulkreadr/tests/testthat/test-utils.R | 56 - bulkreadr-1.2.0/bulkreadr/tests/testthat/test-write_excel_sheets_to_csv.R |only bulkreadr-1.2.0/bulkreadr/vignettes/intro-to-bulkreadr.Rmd |only bulkreadr-1.2.0/bulkreadr/vignettes/labelled-data.Rmd | 256 +++---- bulkreadr-1.2.0/bulkreadr/vignettes/other-functions.Rmd | 352 +++++----- 37 files changed, 1299 insertions(+), 1325 deletions(-)
Title: Understand and Describe Bayesian Models and Posterior
Distributions
Description: Provides utilities to describe posterior
distributions and Bayesian models. It includes point-estimates such as
Maximum A Posteriori (MAP), measures of dispersion (Highest Density
Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and
indices used for null-hypothesis testing (such as ROPE percentage, pd
and Bayes factors). References: Makowski et al. (2021) <doi:10.21105/joss.01541>.
Author: Dominique Makowski [aut, cre] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Micah K. Wilson [aut] ,
Brenton M. Wiernik [aut] ,
Paul-Christian Buerkner [rev],
Tristan Mahr [rev] ,
Henrik Singmann [ctb] ,
Quentin F. Gron [...truncated...]
Maintainer: Dominique Makowski <officialeasystats@gmail.com>
Diff between bayestestR versions 0.15.2 dated 2025-02-07 and 0.15.3 dated 2025-04-28
DESCRIPTION | 16 +- MD5 | 156 ++++++++++---------- NEWS.md | 19 ++ R/bayesfactor.R | 3 R/bayesfactor_inclusion.R | 5 R/bayesfactor_models.R | 5 R/bayesfactor_parameters.R | 10 - R/bayesfactor_restricted.R | 7 R/bci.R | 35 +--- R/check_prior.R | 9 - R/ci.R | 61 ++++--- R/describe_posterior.R | 152 +++++++++---------- R/describe_prior.R | 11 - R/diagnostic_posterior.R | 71 ++++++--- R/effective_sample.R | 148 ++++++++++--------- R/equivalence_test.R | 60 ++++--- R/estimate_density.R | 64 ++------ R/eti.R | 60 +++++-- R/hdi.R | 128 ++++++++++------ R/map_estimate.R | 118 +++++++++++---- R/mcse.R | 16 -- R/mediation.R | 5 R/p_direction.R | 86 +++++++---- R/p_map.R | 68 +++++--- R/p_rope.R | 31 +--- R/p_significance.R | 43 +++-- R/point_estimate.R | 69 ++++++-- R/print.equivalence_test.R | 2 R/rope.R | 239 +++++++++++++++++++++---------- R/si.R | 13 - R/simulate_priors.R | 19 -- R/spi.R | 33 ++-- R/unupdate.R | 6 R/utils.R | 12 + R/utils_print_data_frame.R | 38 ++-- R/weighted_posteriors.R | 10 - README.md | 31 +--- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 man/bayesfactor.Rd | 7 man/bayesfactor_inclusion.Rd | 5 man/bayesfactor_models.Rd | 5 man/bayesfactor_parameters.Rd | 84 ++++++---- man/bayesfactor_restricted.Rd | 34 +++- man/bayestestR-package.Rd | 2 man/bci.Rd | 118 ++++++++------- man/check_prior.Rd | 41 +++++ man/ci.Rd | 103 +++++++------ man/describe_posterior.Rd | 171 ++++++++++++---------- man/describe_prior.Rd | 16 -- man/diagnostic_draws.Rd | 4 man/diagnostic_posterior.Rd | 54 +++++-- man/effective_sample.Rd | 115 +++++++++++--- man/equivalence_test.Rd | 84 +++++++--- man/estimate_density.Rd | 73 +++++++++ man/eti.Rd | 93 ++++++++---- man/figures/unnamed-chunk-8-1.png |binary man/hdi.Rd | 113 +++++++++----- man/map_estimate.Rd | 77 +++++++-- man/mcse.Rd | 62 ++++++-- man/mediation.Rd | 14 - man/p_direction.Rd | 113 ++++++-------- man/p_map.Rd | 72 ++++++--- man/p_rope.Rd | 71 ++++++--- man/p_significance.Rd | 71 ++++++--- man/point_estimate.Rd | 74 ++++++--- man/rope.Rd | 92 +++++++---- man/si.Rd | 60 ++----- man/simulate_prior.Rd | 40 +++++ man/spi.Rd | 42 ++--- man/unupdate.Rd | 6 man/weighted_posteriors.Rd | 52 ++---- tests/testthat/test-blavaan.R | 28 ++- tests/testthat/test-describe_posterior.R | 27 +++ tests/testthat/test-effective_sample.R | 33 +++- tests/testthat/test-map_estimate.R | 17 ++ tests/testthat/test-marginaleffects.R | 22 ++ tests/testthat/test-point_estimate.R | 17 ++ 79 files changed, 2471 insertions(+), 1502 deletions(-)
Title: Access the Weekly 'TidyTuesday' Project Dataset
Description: 'TidyTuesday' is a project by the 'Data Science Learning
Community' in which they post a weekly dataset in a public data
repository (<https://github.com/rfordatascience/tidytuesday>) for
people to analyze and visualize. This package provides the tools to
easily download this data and the description of the source.
Author: Jon Harmon [aut, cre] ,
Ellis Hughes [aut],
Thomas Mock [ctb],
Data Science Learning Community [dtc]
Maintainer: Jon Harmon <jonthegeek@gmail.com>
Diff between tidytuesdayR versions 1.1.2 dated 2024-09-09 and 1.2.0 dated 2025-04-28
DESCRIPTION | 18 +- MD5 | 127 ++++++++++++++----- NAMESPACE | 6 NEWS.md | 12 + R/aaa-shared.R | 5 R/github_api.R | 3 R/last_tuesday.R | 2 R/tt_available.R | 26 +-- R/tt_check_date.R | 16 ++ R/tt_clean.R |only R/tt_curate_data.R |only R/tt_curate_utils.R |only R/tt_download.R | 2 R/tt_download_file.R | 2 R/tt_intro.R |only R/tt_load.R | 3 R/tt_load_gh.R | 3 R/tt_master_file.R | 4 R/tt_meta.R |only R/tt_save_dataset.R |only R/tt_submit.R |only R/use_tidytemplate.R | 31 ++-- R/utils-pipe.R | 28 ++-- R/utils.R | 7 - build |only inst/doc |only inst/templates/cleaning.R |only inst/templates/intro.md |only inst/templates/meta.yaml |only inst/templates/tidytemplate.Rmd | 3 inst/templates/tt_curation.R |only man/figures |only man/gh_get.Rd | 2 man/prep_tt_curate.Rd |only man/printing.Rd | 2 man/shared-params.Rd | 8 - man/should_update_tt_master_file.Rd | 2 man/tt_clean.Rd |only man/tt_compile.Rd | 2 man/tt_curate_data.Rd |only man/tt_intro.Rd |only man/tt_master_file.Rd | 2 man/tt_meta.Rd |only man/tt_save_dataset.Rd |only man/tt_submit.Rd |only man/use_tidytemplate.Rd | 25 ++- tests/testthat/_snaps/tt_clean |only tests/testthat/_snaps/tt_intro |only tests/testthat/_snaps/tt_meta |only tests/testthat/_snaps/tt_meta.md |only tests/testthat/_snaps/tt_save_dataset |only tests/testthat/_snaps/tt_submit.md |only tests/testthat/fixtures/tt_submission |only tests/testthat/fixtures/tt_submission_extra |only tests/testthat/fixtures/tt_submission_missing |only tests/testthat/fixtures/tt_submission_missing_image1 |only tests/testthat/fixtures/tt_submission_missing_image2 |only tests/testthat/fixtures/tt_submission_missing_md |only tests/testthat/test-tt_check_date.R | 21 +++ tests/testthat/test-tt_clean.R |only tests/testthat/test-tt_curate_data.R |only tests/testthat/test-tt_curate_utils.R |only tests/testthat/test-tt_intro.R |only tests/testthat/test-tt_load_gh.R | 12 + tests/testthat/test-tt_meta.R |only tests/testthat/test-tt_save_dataset.R |only tests/testthat/test-tt_submit.R |only tests/testthat/test-use_tidytemplate.R | 1 vignettes |only 69 files changed, 271 insertions(+), 104 deletions(-)
Title: Run Allometric Trophic Networks Models
Description: Implements the differential equations associated to different versions of Allometric Trophic Models (ATN) to estimate the temporal dynamics of species biomasses in food webs. It offers several features to generate synthetic food webs and to parametrise models as well as a wrapper to the ODE solver deSolve.
Author: Benoit Gauzens [cre, aut],
Emilio Berti [aut]
Maintainer: Benoit Gauzens <benoit.gauzens@gmail.com>
Diff between ATNr versions 1.1.0 dated 2023-09-04 and 1.1.1 dated 2025-04-28
DESCRIPTION | 6 MD5 | 18 - NEWS.md | 3 R/default_initialisations.R | 2 build/vignette.rds |binary inst/doc/ATNr.R | 12 inst/doc/ATNr.Rmd | 2 inst/doc/ATNr.html | 668 ++++++++++++++++++++-------------------- inst/doc/model_descriptions.pdf |binary vignettes/ATNr.Rmd | 2 10 files changed, 362 insertions(+), 351 deletions(-)
Title: Bayesian Methods for Change Points Analysis
Description: Perform change points detection on univariate and multivariate time series according to the methods presented by Asael Fabian Martínez and Ramsés H. Mena (2014) <doi:10.1214/14-BA878> and Corradin, Danese and Ongaro (2022) <doi:10.1016/j.ijar.2021.12.019>. It also clusters different types of time dependent data with common change points, see "Model-based clustering of time-dependent observations with common structural changes" (Corradin,Danese,KhudaBukhsh and Ongaro, 2024) <doi:10.48550/arXiv.2410.09552> for details.
Author: Luca Danese [aut, cre, cph] ,
Riccardo Corradin [aut],
Andrea Ongaro [aut]
Maintainer: Luca Danese <l.danese1@campus.unimib.it>
Diff between BayesChange versions 2.0.0 dated 2025-03-12 and 2.1.0 dated 2025-04-28
DESCRIPTION | 6 MD5 | 81 +-- NAMESPACE | 1 NEWS.md | 7 R/BayesChange-package.R | 24 - R/ClustCpObj.R | 48 +- R/DetectCpObj.R | 370 +++++++++++------ R/RcppExports.R | 126 ++++- R/clust_cp.R | 209 +++------ R/detect_cp.R | 323 +++++++++----- README.md | 364 ++++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/tutorial.R | 43 + inst/doc/tutorial.Rmd | 68 ++- inst/doc/tutorial.html | 452 +++++++++++--------- man/ClustCpObj.Rd | 101 ++-- man/DetectCpObj.Rd | 104 ++-- man/clust_cp.Rd | 357 ++++++++-------- man/clust_cp_epi.Rd | 25 - man/clust_cp_multi.Rd | 10 man/clust_cp_uni.Rd | 8 man/detect_cp.Rd | 250 ++++++----- man/detect_cp_epi.Rd |only man/detect_cp_multi.Rd | 134 +++--- man/detect_cp_uni.Rd | 119 ++--- man/plot.ClustCpObj.Rd | 174 ++++---- man/plot.DetectCpObj.Rd | 110 ++--- man/posterior_estimate.ClustCpObj.Rd | 116 ++--- man/posterior_estimate.DetectCpObj.Rd | 106 ++-- man/posterior_estimate.Rd | 24 - man/print.ClustCpObj.Rd | 64 +- man/print.DetectCpObj.Rd | 60 +- man/sim_epi_data.Rd | 13 man/summary.ClustCpObj.Rd | 64 +- man/summary.DetectCpObj.Rd | 62 +- src/RcppExports.cpp | 86 ++- src/code.cpp | 737 +++++++++++++++------------------- tests/testthat/test-test-clust_cp.R | 41 - tests/testthat/test-test-detect_cp.R | 5 vignettes/references.bib | 104 ++-- vignettes/tutorial.Rmd | 68 ++- 42 files changed, 2723 insertions(+), 2341 deletions(-)
Title: Structure Optimized Proximity Scaling
Description: Methods that use flexible variants of multidimensional scaling (MDS) which incorporate parametric nonlinear distance transformations and trade-off the goodness-of-fit fit with structure considerations to find optimal hyperparameters, also known as structure optimized proximity scaling (STOPS) (Rusch, Mair & Hornik, 2023,<doi:10.1007/s11222-022-10197-w>). The package contains various functions, wrappers, methods and classes for fitting, plotting and displaying different 1-way MDS models with ratio, interval, ordinal optimal scaling in a STOPS framework. These cover essentially the functionality of the package smacofx, including Torgerson (classical) scaling with power transformations of dissimilarities, SMACOF MDS with powers of dissimilarities, Sammon mapping with powers of dissimilarities, elastic scaling with powers of dissimilarities, spherical SMACOF with powers of dissimilarities, (ALSCAL) s-stress MDS with powers of dissimilarities, r-stress MDS, MDS with powers of diss [...truncated...]
Author: Thomas Rusch [aut, cre] ,
Patrick Mair [aut] ,
Kurt Hornik [ctb]
Maintainer: Thomas Rusch <thomas.rusch@wu.ac.at>
Diff between stops versions 1.8-2 dated 2024-09-22 and 1.9-1 dated 2025-04-28
DESCRIPTION | 17 MD5 | 21 - NAMESPACE | 2 NEWS | 4 R/stops-package.R | 9 R/stops.R | 11 build/vignette.rds |binary inst/doc/stops.html | 842 ++++++++++++++++--------------------------------- man/stops-package.Rd | 9 man/stops.Rd | 6 vignettes/stops.Rmd | 223 ++---------- vignettes/stopsOLD.Rmd |only 12 files changed, 365 insertions(+), 779 deletions(-)
Title: Bayesian Age-Depth Modelling of Cores Dated by Pb-210
Description: An approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for 210Pb-dated deposits using prior information. It can combine 210Pb, radiocarbon, and other dates in the chronologies. See Aquino et al. (2018) <doi:10.1007/s13253-018-0328-7>. Note that parts of the code underlying 'rplum' are derived from the 'rbacon' package by the same authors, and there remains a degree of overlap between the two packages.
Author: Maarten Blaauw [aut, cre] ,
J. Andres Christen [aut, ctb, cph]
,
Marco A. Aquino Lopez [aut] ,
Judith Esquivel Vazquez [ctb],
Oscar M. Gonzalez V. [ctb],
Ted Belding [cph],
James Theiler [cph],
Brian Gough [cph],
Charles Karney [cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rplum versions 0.5.1 dated 2024-09-29 and 0.5.2 dated 2025-04-28
DESCRIPTION | 10 MD5 | 26 + NAMESPACE | 22 + NEWS.md | 10 R/fromrbacon.R | 652 +++++++++++++++++++++++++++++++++++++++++++++++++ R/read_write_plum.R | 34 +- R/rplum-package.R | 7 R/rplum.R | 71 +++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/rplum.R | 8 inst/doc/rplum.html | 12 man/Plum.Rd | 6 man/agedepth.Rd |only man/draw.pbmodelled.Rd |only 15 files changed, 793 insertions(+), 65 deletions(-)
Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source
package. 'pkgdown' converts your documentation, vignettes, 'README',
and more to 'HTML' making it easy to share information about your
package online.
Author: Hadley Wickham [aut, cre] ,
Jay Hesselberth [aut] ,
Maelle Salmon [aut] ,
Olivier Roy [aut],
Salim Brueggemann [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between pkgdown versions 2.1.1 dated 2024-09-17 and 2.1.2 dated 2025-04-28
DESCRIPTION | 27 + MD5 | 303 +++++++++++----------- NEWS.md | 25 + R/build-404.R | 9 R/build-article.R | 100 ++++--- R/build-articles.R | 36 +- R/build-favicons.R | 15 - R/build-footer.R | 15 - R/build-github.R | 30 +- R/build-home-authors.R | 74 ++++- R/build-home-community.R | 4 R/build-home-index.R | 63 +++- R/build-home-license.R | 4 R/build-home-md.R | 4 R/build-home.R | 23 - R/build-news.R | 52 ++- R/build-quarto-articles.R | 62 +++- R/build-redirects.R | 10 R/build-reference-index.R | 48 ++- R/build-reference.R | 89 ++++-- R/build-search-docs.R | 90 ++++-- R/build-tutorials.R | 11 R/build.R | 116 ++++---- R/check-built.R | 1 R/check.R | 1 R/clean.R | 16 - R/config.R | 179 +++++++----- R/context.R | 25 + R/deploy-site.R | 85 ++++-- R/development.R | 27 + R/external-deps.R | 38 -- R/figure.R | 33 +- R/highlight.R | 8 R/html-build.R | 6 R/init.R | 17 - R/markdown.R | 13 R/navbar-menu.R | 41 ++ R/navbar.R | 23 + R/package.R | 95 +++++- R/preview.R | 8 R/rd-example.R | 32 +- R/rd-html.R | 96 +++--- R/rd.R | 6 R/render.R | 54 ++- R/repo.R | 42 ++- R/test.R | 30 ++ R/theme.R | 64 ++-- R/topics-external.R | 4 R/topics.R | 79 +++-- R/tweak-homepage.R | 50 ++- R/tweak-navbar.R | 21 + R/tweak-page.R | 13 R/tweak-reference.R | 15 - R/tweak-tabset.R | 27 + R/tweak-tags.R | 49 ++- R/usage.R | 46 ++- R/utils-fs.R | 43 +-- R/utils-io.R | 7 R/utils-pdf.R | 4 R/utils.R | 42 +-- build/stage23.rdb |binary build/vignette.rds |binary inst/BS3/templates/head.html | 11 inst/BS5/assets/pkgdown.scss | 36 +- inst/BS5/templates/content-authors.html | 2 inst/BS5/templates/content-citation-authors.html | 2 inst/BS5/templates/head.html | 32 +- inst/doc/customise.Rmd | 15 - inst/doc/customise.html | 145 +++++----- inst/doc/how-to-update-released-site.Rmd | 16 - inst/doc/how-to-update-released-site.html | 20 + inst/doc/pkgdown.R | 14 - inst/doc/quarto.html | 182 ------------- inst/doc/quarto.qmd | 2 inst/doc/translations.R | 14 - man/build_home.Rd | 11 man/build_site.Rd | 21 - man/clean.Rd | 4 man/index.Rd | 1 man/pkgdown-package.Rd | 2 man/test-crayon.Rd | 1 man/test-dont.Rd | 1 man/test-figures.Rd | 1 man/test-links.Rd | 1 man/test-lists.Rd | 1 man/test-long-lines.Rd | 1 man/test-math-examples.Rd |only man/test-output-styles.Rd | 1 man/test-params.Rd | 1 man/test-sexpr-title.Rd | 1 man/test-tables.Rd | 1 man/test-verbatim.Rd | 1 tests/testthat/_snaps/build-article.md | 49 --- tests/testthat/_snaps/build-home-authors.md | 10 tests/testthat/_snaps/build-home-index.md | 6 tests/testthat/_snaps/build-reference-index.md | 2 tests/testthat/_snaps/check.md | 2 tests/testthat/_snaps/init.md | 24 - tests/testthat/_snaps/markdown.md | 9 tests/testthat/_snaps/navbar.md | 2 tests/testthat/_snaps/not-in-rcmcheck |only tests/testthat/_snaps/rcmdcheck |only tests/testthat/_snaps/render.md | 1 tests/testthat/assets/reference-fail/R/f.R | 1 tests/testthat/assets/reference-language |only tests/testthat/assets/reference-selector/R/funs.R | 6 tests/testthat/assets/reference/R/funs.R | 16 - tests/testthat/helper.R | 31 +- tests/testthat/test-build-article.R | 267 +++++++++++++------ tests/testthat/test-build-articles.R | 62 +++- tests/testthat/test-build-favicons.R | 3 tests/testthat/test-build-footer.R | 53 ++- tests/testthat/test-build-home-authors.R | 211 ++++++++++----- tests/testthat/test-build-home-index.R | 72 +++-- tests/testthat/test-build-home-license.R | 1 tests/testthat/test-build-home-md.R | 3 tests/testthat/test-build-home.R | 12 tests/testthat/test-build-logo.R | 1 tests/testthat/test-build-news.R | 92 ++++-- tests/testthat/test-build-quarto-articles.R | 70 +++-- tests/testthat/test-build-reference-index.R | 25 + tests/testthat/test-build-reference.R | 28 +- tests/testthat/test-build-search-docs.R | 36 +- tests/testthat/test-build-tutorials.R | 46 ++- tests/testthat/test-check.R | 22 - tests/testthat/test-config.R | 1 tests/testthat/test-development.R | 2 tests/testthat/test-figure.R | 6 tests/testthat/test-highlight.R | 12 tests/testthat/test-init.R | 9 tests/testthat/test-markdown.R | 8 tests/testthat/test-navbar-menu.R | 10 tests/testthat/test-navbar.R | 95 ++++-- tests/testthat/test-package.R | 57 +++- tests/testthat/test-preview.R | 2 tests/testthat/test-rd-data.R | 6 tests/testthat/test-rd-example.R | 5 tests/testthat/test-rd-html.R | 73 +++-- tests/testthat/test-render.R | 23 + tests/testthat/test-repo.R | 81 ++++- tests/testthat/test-templates.R | 102 ++++--- tests/testthat/test-topics.R | 28 +- tests/testthat/test-tweak-homepage.R | 60 ++-- tests/testthat/test-tweak-navbar.R | 12 tests/testthat/test-tweak-page.R | 120 ++++++-- tests/testthat/test-tweak-reference.R | 61 +++- tests/testthat/test-tweak-tabset.R | 28 +- tests/testthat/test-tweak-tags.R | 125 ++++++--- tests/testthat/test-usage.R | 3 tests/testthat/test-utils.R | 12 vignettes/customise.Rmd | 15 - vignettes/how-to-update-released-site.Rmd | 16 - vignettes/quarto.qmd | 2 vignettes/test/jss.log | 2 154 files changed, 3281 insertions(+), 1949 deletions(-)
Title: Parametric Bootstrap, Kenward-Roger and Satterthwaite Based
Methods for Test in Mixed Models
Description: Computes p-values based on (a) Satterthwaite or
Kenward-Rogers degree of freedom methods and (b) parametric bootstrap
for mixed effects models as implemented in the 'lme4'
package. Implements parametric bootstrap test for generalized linear
mixed models as implemented in 'lme4' and generalized linear
models. The package is documented in the paper by Halekoh and
Højsgaard, (2012, <doi:10.18637/jss.v059.i09>). Please see
'citation("pbkrtest")' for citation details.
Author: Ulrich Halekoh [aut, cph],
Soeren Hoejsgaard [aut, cre, cph]
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between pbkrtest versions 0.5.3 dated 2024-06-26 and 0.5.4 dated 2025-04-28
pbkrtest-0.5.3/pbkrtest/man/kr_modcomp.Rd |only pbkrtest-0.5.3/pbkrtest/man/pb_modcomp.Rd |only pbkrtest-0.5.3/pbkrtest/man/sat_modcomp.Rd |only pbkrtest-0.5.4/pbkrtest/DESCRIPTION | 9 pbkrtest-0.5.4/pbkrtest/MD5 | 49 +- pbkrtest-0.5.4/pbkrtest/NAMESPACE | 17 pbkrtest-0.5.4/pbkrtest/NEWS | 15 pbkrtest-0.5.4/pbkrtest/R/KR_modcomp.R | 35 - pbkrtest-0.5.4/pbkrtest/R/PB_modcomp.R | 490 ++++++++++++--------- pbkrtest-0.5.4/pbkrtest/R/PB_refdist.R | 110 ++++ pbkrtest-0.5.4/pbkrtest/R/SAT_modcomp.R | 96 ++-- pbkrtest-0.5.4/pbkrtest/R/X2_modcomp.R |only pbkrtest-0.5.4/pbkrtest/R/anovax.R |only pbkrtest-0.5.4/pbkrtest/R/handle_models.r |only pbkrtest-0.5.4/pbkrtest/R/init_modcomp.R | 13 pbkrtest-0.5.4/pbkrtest/R/xx_modcomp_new.R |only pbkrtest-0.5.4/pbkrtest/build/vignette.rds |binary pbkrtest-0.5.4/pbkrtest/inst/doc/a01-pbkrtest.html | 267 +++++------ pbkrtest-0.5.4/pbkrtest/inst/doc/a01-pbkrtest.rmd | 29 + pbkrtest-0.5.4/pbkrtest/inst/doc/a02-coercion.html | 200 +++----- pbkrtest-0.5.4/pbkrtest/man/anovax.Rd |only pbkrtest-0.5.4/pbkrtest/man/anovax_list.Rd |only pbkrtest-0.5.4/pbkrtest/man/any_modcomp.Rd |only pbkrtest-0.5.4/pbkrtest/man/comodex.Rd |only pbkrtest-0.5.4/pbkrtest/man/devfun_vp.Rd | 7 pbkrtest-0.5.4/pbkrtest/man/get_Fstat_ddf.Rd | 11 pbkrtest-0.5.4/pbkrtest/man/get_covbeta.Rd | 8 pbkrtest-0.5.4/pbkrtest/man/kr__modcomp.Rd |only pbkrtest-0.5.4/pbkrtest/man/pb-refdist.Rd | 10 pbkrtest-0.5.4/pbkrtest/man/pb__modcomp.Rd |only pbkrtest-0.5.4/pbkrtest/man/sat__modcomp.Rd |only pbkrtest-0.5.4/pbkrtest/man/x2__modcomp.Rd |only pbkrtest-0.5.4/pbkrtest/vignettes/a01-pbkrtest.rmd | 29 + 33 files changed, 821 insertions(+), 574 deletions(-)
Title: Functions and Datasets for "Methods of Statistical Model
Estimation"
Description: Functions and datasets from Hilbe, J.M., and Robinson, A.P. 2013. Methods of Statistical Model Estimation. Chapman & Hall / CRC.
Author: Joseph Hilbe [aut],
Andrew Robinson [aut, cre]
Maintainer: Andrew Robinson <apro@unimelb.edu.au>
Diff between msme versions 0.5.3 dated 2018-03-18 and 0.5.4 dated 2025-04-28
ChangeLog | 10 ++++++++++ DESCRIPTION | 18 +++++++++++++----- MD5 | 22 +++++++++++----------- R/watson.R | 18 +++++++++--------- data/doll.rda |binary data/heart.rda |binary data/medpar.rda |binary data/rwm5yr.rda |binary data/titanic.rda |binary data/ufc.rda |binary man/P__disp.Rd | 2 +- man/ml_g.Rd | 2 +- 12 files changed, 45 insertions(+), 27 deletions(-)
Title: Multinomial Logit Models
Description: Maximum likelihood estimation of random utility discrete
choice models. The software is described in Croissant (2020)
<doi:10.18637/jss.v095.i11> and the underlying methods in
Train (2009) <doi:10.1017/CBO9780511805271>.
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between mlogit versions 1.1-1 dated 2020-10-02 and 1.1-2 dated 2025-04-28
DESCRIPTION | 13 MD5 | 132 ++++----- NEWS.md | 4 R/lnl.rlogit.R | 4 R/methods.R | 2 R/mlogit.R | 2 R/test.R | 2 build/partial.rdb |binary build/vignette.rds |binary data/Car.rda |binary data/Catsup.rda |binary data/Cracker.rda |binary data/Electricity.rda |binary data/Fishing.rda |binary data/Game.rda |binary data/Game2.rda |binary data/HC.rda |binary data/Heating.rda |binary data/JapaneseFDI.rda |binary data/Mode.rda |binary data/ModeCanada.rda |binary data/NOx.rda |binary data/RiskyTransport.rda |binary data/Train.rda |binary inst/REFERENCES.bib | 41 -- inst/doc/c2.formula.data.html | 487 ++++++++++++++++++++++++++------- inst/doc/c3.rum.html | 513 ++++++++++++++++++++++++++--------- inst/doc/c4.relaxiid.html | 507 ++++++++++++++++++++++++++--------- inst/doc/c5.mxl.R | 14 inst/doc/c5.mxl.html | 559 ++++++++++++++++++++++++++++----------- inst/doc/c6.mprobit.html | 418 +++++++++++++++++++++++------ inst/doc/c7.miscmodels.html | 409 +++++++++++++++++++++++----- inst/doc/e1mlogit.html | 475 +++++++++++++++++++++++++-------- inst/doc/e2nlogit.html | 439 ++++++++++++++++++++++++------ inst/doc/e3mxlogit.R | 28 - inst/doc/e3mxlogit.html | 459 +++++++++++++++++++++++++------- inst/doc/e4mprobit.html | 395 ++++++++++++++++++++++----- inst/doc/mlogit.html | 250 ++++++++++++++++- man/Car.Rd | 35 +- man/Catsup.Rd | 15 - man/Cracker.Rd | 15 - man/Electricity.Rd | 21 - man/Fishing.Rd | 23 - man/Game.Rd | 23 - man/HC.Rd | 25 - man/Heating.Rd | 21 - man/JapaneseFDI.Rd | 37 +- man/Mode.Rd | 11 man/ModeCanada.Rd | 23 - man/NOx.Rd | 31 +- man/RiskyTransport.Rd | 52 +-- man/Train.Rd | 19 - man/cor.mlogit.Rd | 9 man/distribution.Rd | 36 +- man/effects.mlogit.Rd | 8 man/hmftest.Rd | 14 man/logsum.Rd | 44 +-- man/miscmethods.mlogit.Rd | 30 +- man/mlogit-deprecated.Rd | 46 +-- man/mlogit-package.Rd | 14 man/mlogit.Rd | 111 +++---- man/mlogit.optim.Rd | 60 ++-- man/model.matrix.dfidx_mlogit.Rd | 2 man/plot.mlogit.Rd | 24 - man/rpar.Rd | 35 +- man/scoretest.Rd | 26 - man/vcov.mlogit.Rd | 18 - 67 files changed, 4393 insertions(+), 1588 deletions(-)
Title: Get Data from the French National Database on Water 'Hub'Eau'
Description: Collection of functions to help retrieving data from
'Hub'Eau' the free and public French National APIs on water
<https://hubeau.eaufrance.fr/>.
Author: David Dorchies [aut, cre] ,
Pascal Irz [ctb] ,
Sebastien Grall [ctb],
Philippe Amiotte Suchet [ctb]
Maintainer: David Dorchies <david.dorchies@inrae.fr>
Diff between hubeau versions 0.5.1 dated 2025-01-13 and 0.5.2 dated 2025-04-28
DESCRIPTION | 6 - MD5 | 22 +++--- NEWS.md | 9 ++ R/doApiQuery.R | 4 - R/get_ecoulement.R | 14 ++-- R/get_hydrometrie.R | 37 ++++++----- R/sysdata.rda |binary inst/doc/data_extraction_naiades.html | 60 +++++++++--------- inst/doc/example_ecoulement_api.html | 10 +-- inst/doc/example_niveaux_nappes_api.html | 11 +-- man/get_ecoulement.Rd | 14 ++-- tests/testthat/test-get_hydrometrie_observations_tr.R | 15 +++- 12 files changed, 112 insertions(+), 90 deletions(-)
Title: Functions, Data and Code for Count Data
Description: Functions, data and code for Hilbe, J.M. 2011. Negative Binomial Regression, 2nd Edition (Cambridge University Press) and Hilbe, J.M. 2014. Modeling Count Data (Cambridge University Press).
Author: Joseph M Hilbe [aut],
Andrew Robinson [cre]
Maintainer: Andrew Robinson <apro@unimelb.edu.au>
Diff between COUNT versions 1.3.4 dated 2016-10-19 and 1.3.5 dated 2025-04-28
DESCRIPTION | 21 +++++++++++++------ MD5 | 56 +++++++++++++++++++++++++-------------------------- data/affairs.rda |binary data/azcabgptca.rda |binary data/azdrg112.rda |binary data/azpro.rda |binary data/azprocedure.rda |binary data/badhealth.rda |binary data/fasttrakg.rda |binary data/fishing.rda |binary data/lbw.rda |binary data/lbwgrp.rda |binary data/loomis.rda |binary data/mdvis.rda |binary data/medpar.rda |binary data/nuts.rda |binary data/rwm.rda |binary data/rwm1984.rda |binary data/rwm5yr.rda |binary data/ships.rda |binary data/smoking.rda |binary data/titanic.rda |binary data/titanicgrp.rda |binary man/fasttrakg.Rd | 2 - man/ml.nb1.Rd | 2 - man/ml.nb2.Rd | 2 - man/ml.nbc.Rd | 2 - man/ml.pois.Rd | 2 - man/modelfit.Rd | 2 - 29 files changed, 49 insertions(+), 40 deletions(-)
Title: Constrained Generalized Additive Model
Description: A constrained generalized additive model is fitted by the cgam routine. Given a set of predictors, each of which may have a shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The ShapeSelect routine chooses a subset of predictor variables and describes the component relationships with the response. For each predictor, the user needs only specify a set of possible shape or order restrictions. A model selection method chooses the shapes and orderings of the relationships as well as the variables. The cone information criterion (CIC) is used to select the best combination of variables and shapes. A genetic algorithm may be used when the set of possible models is large. In addition, the cgam routine implements a two-dimensional isotonic regression using warped-plane splines without additivity assumptions. It can also fit a convex or concave regression surface with [...truncated...]
Author: Mary Meyer [aut],
Xiyue Liao [aut, cre]
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between cgam versions 1.25 dated 2025-04-23 and 1.26 dated 2025-04-28
ChangeLog | 5 ++- DESCRIPTION | 8 ++--- MD5 | 6 ++-- R/cgam.R | 89 +++++++++++++++++++++++++++++++++++++----------------------- 4 files changed, 67 insertions(+), 41 deletions(-)
Title: R Commander Plug-in for Case 2 Best-Worst Scaling
Description: Adds menu items for case 2 (profile case) best-worst scaling (BWS2) to the R Commander. BWS2 is a question-based survey method that constructs profiles (combinations of attribute levels) using an orthogonal array, asks respondents to select the best and worst levels in each profile, and measures preferences for attribute levels by analyzing the responses. For details, see Aizaki and Fogarty (2019) <doi:10.1016/j.jocm.2019.100171>.
Author: Hideo Aizaki [aut, cre]
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>
Diff between RcmdrPlugin.BWS2 versions 0.2-2 dated 2024-05-21 and 0.3-0 dated 2025-04-28
DESCRIPTION | 16 + MD5 | 13 - NEWS | 7 R/RcmdrPlugin.BWS2.R | 353 ++++++++++++++++++++++++++++++++++++++-- inst/CITATION | 11 - inst/etc/menus.txt | 1 man/RcmdrPlugin.BWS2-package.Rd | 29 +-- man/bws1Response.Rd |only 8 files changed, 390 insertions(+), 40 deletions(-)
More information about RcmdrPlugin.BWS2 at CRAN
Permanent link
Title: Empirical Distribution Ordering Inference Framework (EDOIF)
Description: A non-parametric framework based on estimation statistics principle. Its main purpose is to infer orders of empirical distributions from different categories based on a probability of finding a value in one distribution that is greater than an expectation of another distribution. Given a set of ordered-pair of real-category values the framework is capable of 1) inferring orders of domination of categories and representing orders in the form of a graph; 2) estimating magnitude of difference between a pair of categories in forms of mean-difference confidence intervals; and 3) visualizing domination orders and magnitudes of difference of categories. The publication of this package is at Chainarong Amornbunchornvej, Navaporn Surasvadi, Anon Plangprasopchok, and Suttipong Thajchayapong (2020) <doi:10.1016/j.heliyon.2020.e05435>.
Author: Chainarong Amornbunchornvej [aut, cre]
Maintainer: Chainarong Amornbunchornvej <grandca@gmail.com>
Diff between EDOIF versions 0.1.3 dated 2021-03-28 and 0.1.4 dated 2025-04-28
DESCRIPTION | 9 LICENSE | 6 MD5 | 80 ++-- NAMESPACE | 60 +-- NEWS.md | 18 R/EDOIF.R | 290 +++++++-------- R/SimNonNormalDist.R | 356 +++++++++---------- R/getBootMeanDiff.R | 192 +++++----- R/getConfInv.R | 100 ++--- R/getDominantNet.R | 226 ++++++------ R/getOrder.R | 74 ++-- R/graphOperation.R | 180 ++++----- R/plotGraphphics.R | 558 +++++++++++++++--------------- R/plotText.R | 166 ++++----- README.md | 311 ++++++++--------- build/vignette.rds |binary inst/CITATION | 39 +- inst/doc/EDOIF_demo.R | 160 ++++---- inst/doc/EDOIF_demo.Rmd | 216 +++++------ inst/doc/EDOIF_demo.html | 781 ++++++++++++++++++------------------------- man/EDOIF.Rd | 182 +++++----- man/SimMixDist.Rd | 74 ++-- man/SimNonNormalDist.Rd | 72 +-- man/bootDiffmeanFunc.Rd | 64 +-- man/checkSim3Res.Rd | 68 +-- man/getADJNetDen.Rd | 62 +-- man/getConfInv.Rd | 66 +-- man/getDominantRADJ.Rd | 46 +- man/getMegDiffConfInv.Rd | 76 ++-- man/getOrder.Rd | 64 +-- man/getWilcoxDominantRADJ.Rd | 54 +- man/getiGraphNetDen.Rd | 62 +-- man/getiGraphOBJ.Rd | 66 +-- man/getttestDominantRADJ.Rd | 54 +- man/meanBoot.Rd | 40 +- man/plot.EDOIF.Rd | 80 ++-- man/plotGraph.Rd | 70 +-- man/plotMeanCIs.Rd | 82 ++-- man/plotMeanDiffCIs.Rd | 86 ++-- man/print.EDOIF.Rd | 62 +-- vignettes/EDOIF_demo.Rmd | 216 +++++------ 41 files changed, 2677 insertions(+), 2791 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-16 1.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-27 0.8.0
2021-04-21 0.7.1
2021-01-28 0.7.0
2016-09-22 0.1.0