Wed, 12 Nov 2025

Package statgenGxE updated to version 1.0.11 with previous version 1.0.10 dated 2025-06-24

Title: Genotype by Environment (GxE) Analysis
Description: Analysis of multi environment data of plant breeding experiments following the analyses described in Malosetti, Ribaut, and van Eeuwijk (2013), <doi:10.3389/fphys.2013.00044>. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris. Some functions have been created to be used in conjunction with the R package 'asreml' for the 'ASReml' software, which can be obtained upon purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r/>).
Author: Bart-Jan van Rossum [aut, cre] , Fred van Eeuwijk [ctb] , Martin Boer [ctb] , Marcos Malosetti [ctb] , Daniela Bustos-Korts [ctb] , Emilie J Millet [ctb] , Joao Paulo [ctb] , Maikel Verouden [ctb] , Willem Kruijer [ctb] , Ron Wehrens [ctb] , Choazhi [...truncated...]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>

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Package rmake updated to version 1.2.1 with previous version 1.2.0 dated 2025-08-26

Title: Makefile Generator for R Analytical Projects
Description: Creates and maintains a build process for complex analytic tasks in R. Package allows to easily generate Makefile for the (GNU) 'make' tool, which drives the build process by (in parallel) executing build commands in order to update results accordingly to given dependencies on changed data or updated source files.
Author: Michal Burda [aut, cre]
Maintainer: Michal Burda <michal.burda@osu.cz>

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Package digest updated to version 0.6.38 with previous version 0.6.37 dated 2024-08-19

Title: Create Compact Hash Digests of R Objects
Description: Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as 'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.
Author: Dirk Eddelbuettel [aut, cre] , Antoine Lucas [ctb] , Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] , Simon Urbanek [ctb] , Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb] , Duncan Murdoch [ctb], Jim Hester [ctb] , [...truncated...]
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package TransGraph updated to version 1.1.0 with previous version 1.0.0 dated 2023-10-19

Title: Transfer Graph Learning
Description: Transfer learning, aiming to use auxiliary domains to help improve learning of the target domain of interest when multiple heterogeneous datasets are available, has been a hot topic in statistical machine learning. The recent transfer learning methods with statistical guarantees mainly focus on the overall parameter transfer for supervised models in the ideal case with the informative auxiliary domains with overall similarity. In contrast, transfer learning for unsupervised graph learning is in its infancy and largely follows the idea of overall parameter transfer as for supervised learning. In this package, the transfer learning for several complex graphical models is implemented, including Tensor Gaussian graphical models, non-Gaussian directed acyclic graph (DAG), and Gaussian graphical mixture models. Notably, this package promotes local transfer at node-level and subgroup-level in DAG structural learning and Gaussian graphical mixture models, respectively, which are more flexible [...truncated...]
Author: Mingyang Ren [aut, cre] , Ruixuan Zhao [aut], Xin He [aut], Junhui Wang [aut]
Maintainer: Mingyang Ren <renmingyang17@mails.ucas.ac.cn>

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Package sspse updated to version 1.1.0-6 with previous version 1.1.0-4 dated 2025-11-06

Title: Estimating Hidden Population Size using Respondent Driven Sampling Data
Description: Estimate the size of a networked population based on respondent-driven sampling data. The package is part of the "RDS Analyst" suite of packages for the analysis of respondent-driven sampling data. See Handcock, Gile and Mar (2014) <doi:10.1214/14-EJS923>, Handcock, Gile and Mar (2015) <doi:10.1111/biom.12255>, Kim and Handcock (2021) <doi:10.1093/jssam/smz055>, and McLaughlin, et. al. (2023) <doi:10.1214/23-AOAS1807>.
Author: Mark S. Handcock [aut, cre, cph] , Krista J. Gile [aut, cph], Brian Kim [ctb], Katherine R. McLaughlin [ctb]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>

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Package r2resize updated to version 2.0 with previous version 1.9.2 dated 2024-11-25

Title: In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Description: Offers a suite of tools designed to enhance the responsiveness and interactivity of web-based documents and applications created with R. It provides an automatic, configurable resizing toolbar that can be seamlessly integrated with HTML elements such as containers, images, and tables, allowing end-users to dynamically adjust their dimensions. Beyond the toolbar, the package includes a rich collection of flexible, expandable, and interactive container functionalities, such as highly customizable split-screen layouts (splitCard), versatile sizeable cards (sizeableCard), dynamic window-like elements (windowCard), visually engaging emphasis cards (empahsisCard), and sophisticated flexible and elastic card layouts (flexCard, elastiCard). Furthermore, it offers an elegant image viewer and resizer (shinyExpandImage) perfect for interactive galleries. r2resize is particularly well-suited for developers and data scientists looking to create modern, responsive, and user-friendly 'shiny' applicat [...truncated...]
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>

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Package MMGFM updated to version 1.2.1 with previous version 1.2.0 dated 2025-07-29

Title: Multi-Study Multi-Modality Generalized Factor Model
Description: We introduce a generalized factor model designed to jointly analyze high-dimensional multi-modality data from multiple studies by extracting study-shared and specified factors. Our factor models account for heterogeneous noises and overdispersion among modality variables with augmented covariates. We propose an efficient and speedy variational estimation procedure for estimating model parameters, along with a novel criterion for selecting the optimal number of factors. More details can be referred to Liu et al. (2025) <doi:10.48550/arXiv.2507.09889>.
Author: Wei Liu [aut, cre], Qingzhi Zhong [aut]
Maintainer: Wei Liu <liuweideng@gmail.com>

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Package lolliplot (with last version 0.2.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-01-26 0.2.2

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Package treestats updated to version 1.70.8 with previous version 1.70.7 dated 2025-09-11

Title: Phylogenetic Tree Statistics
Description: Collection of phylogenetic tree statistics, collected throughout the literature. All functions have been written to maximize computation speed. The package includes umbrella functions to calculate all statistics, all balance associated statistics, or all branching time related statistics. Furthermore, the 'treestats' package supports summary statistic calculations on Ltables, provides speed-improved coding of branching times, Ltable conversion and includes algorithms to create intermediately balanced trees. Full description can be found in Janzen (2024) <doi:10.1016/j.ympev.2024.108168>.
Author: Thijs Janzen [cre, aut]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>

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Package reshape2 updated to version 1.4.5 with previous version 1.4.4 dated 2020-04-09

Title: Flexibly Reshape Data: A Reboot of the Reshape Package
Description: Flexibly restructure and aggregate data using just two functions: melt and 'dcast' (or 'acast').
Author: Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@posit.co>

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Package NPCirc updated to version 3.1.2 with previous version 3.1.1 dated 2022-11-10

Title: Nonparametric Circular Methods
Description: Nonparametric smoothing methods for density and regression estimation involving circular data, including the estimation of the mean regression function and other conditional characteristics.
Author: Maria Alonso-Pena [aut, cre], Maria Oliveira [aut], Jose Ameijeiras-Alonso [aut], Rosa M. Crujeiras [aut], Irene Gijbels [aut], Alberto Rodriguez-Casal [aut], Felicita Scapini [dtc]
Maintainer: Maria Alonso-Pena <mariaalonso.pena@usc.es>

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 NPCirc-3.1.2/NPCirc/man/circsizer.density.Rd         |    2 
 NPCirc-3.1.2/NPCirc/man/circsizer.regression.Rd      |    2 
 NPCirc-3.1.2/NPCirc/man/dcircmix.Rd                  |    2 
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 NPCirc-3.1.2/NPCirc/man/kern.den.circ.Rd             |    6 -
 NPCirc-3.1.2/NPCirc/man/kern.dpreg.circ.Rd           |    4 -
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 NPCirc-3.1.2/NPCirc/man/lines.regression.circular.Rd |    4 -
 NPCirc-3.1.2/NPCirc/man/modalreg.circ.lin.Rd         |    6 -
 NPCirc-3.1.2/NPCirc/man/noeffect.circ.lin.Rd         |    4 -
 NPCirc-3.1.2/NPCirc/man/plot.regression.circular.Rd  |    4 -
 NPCirc-3.1.2/NPCirc/src/Makevars                     |   12 ---
 NPCirc-3.1.2/NPCirc/src/Makevars.win                 |   12 ---
 37 files changed, 140 insertions(+), 121 deletions(-)

More information about NPCirc at CRAN
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Package mlt updated to version 1.7-2 with previous version 1.7-1 dated 2025-10-31

Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation models via the most likely transformation approach described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020) <DOI:10.18637/jss.v092.i01>. Shift-scale (Siegfried et al, 2023, <DOI:10.1080/00031305.2023.2203177>) and multivariate (Klein et al, 2022, <DOI:10.1111/sjos.12501>) transformation models are part of this package. A package vignette is available from <DOI:10.32614/CRAN.package.mlt.docreg> and more convenient user interfaces to many models from <DOI:10.32614/CRAN.package.tram>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between mlt versions 1.7-1 dated 2025-10-31 and 1.7-2 dated 2025-11-12

 DESCRIPTION       |    8 ++++----
 MD5               |   10 +++++-----
 R/R.R             |    2 +-
 build/partial.rdb |binary
 inst/NEWS.Rd      |   10 ++++++++++
 man/R.Rd          |    3 ++-
 6 files changed, 22 insertions(+), 11 deletions(-)

More information about mlt at CRAN
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