Title: Fitting Household Transmission Model to Estimate Household
Transmission Dynamics of Influenza
Description: A Bayesian household transmission model to estimate household transmission dynamics, with accounting for infection from community and tertiary cases.
Author: Tim Tsang [aut, cre]
Maintainer: Tim Tsang <timkltsang@gmail.com>
Diff between hhdynamics versions 1.3.2 dated 2026-03-26 and 1.3.3 dated 2026-04-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 11 +++++++++++ R/utils-plot.R | 3 ++- 4 files changed, 19 insertions(+), 7 deletions(-)
Title: Model-Independent Variable Selection via the Rule-Based Variable
Priority
Description: A new framework of variable selection, which instead of generating artificial covariates such as permutation importance and knockoffs, creates release rules to examine the affect on the response for each covariate where the conditional distribution of the response variable can be arbitrary and unknown.
Author: Min Lu [aut],
Aster K. Shear [aut],
Udaya B. Kogalur [aut, cre],
Hemant Ishwaran [aut]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between varPro versions 2.1.0 dated 2026-02-12 and 3.0.0 dated 2026-04-08
varPro-2.1.0/varPro/inst/NEWS |only varPro-3.0.0/varPro/DESCRIPTION | 8 varPro-3.0.0/varPro/MD5 | 48 ++-- varPro-3.0.0/varPro/NAMESPACE | 9 varPro-3.0.0/varPro/NEWS.md |only varPro-3.0.0/varPro/R/importance.varpro.R | 66 +++++- varPro-3.0.0/varPro/R/varpro.news.R | 2 varPro-3.0.0/varPro/R/varpro.strength.R | 253 +++++++++++++++++--------- varPro-3.0.0/varPro/man/utilities_internal.Rd | 8 varPro-3.0.0/varPro/man/varpro.Rd | 20 +- varPro-3.0.0/varPro/src/Makevars | 10 - varPro-3.0.0/varPro/src/R_init_varPro.c | 5 varPro-3.0.0/varPro/src/bootstrapVP.c |only varPro-3.0.0/varPro/src/bootstrapVP.h |only varPro-3.0.0/varPro/src/entry.c | 132 ++++++++----- varPro-3.0.0/varPro/src/entry.h | 1 varPro-3.0.0/varPro/src/external.h | 19 + varPro-3.0.0/varPro/src/importance.c | 25 ++ varPro-3.0.0/varPro/src/importance.h | 6 varPro-3.0.0/varPro/src/internal.c | 19 + varPro-3.0.0/varPro/src/termOps.c | 26 ++ varPro-3.0.0/varPro/src/termOps.h | 10 - varPro-3.0.0/varPro/src/terminal.h | 2 varPro-3.0.0/varPro/src/treeOps.c | 191 ++++++++++++++++--- varPro-3.0.0/varPro/src/varProAux.c | 115 +++++++++++ varPro-3.0.0/varPro/src/varProAux.h | 14 + varPro-3.0.0/varPro/src/varProMain.c | 67 ++++-- 27 files changed, 796 insertions(+), 260 deletions(-)
Title: Calculate Concentration and Dispersion in Ordered Rating Scales
Description: Calculates concentration and dispersion in ordered rating scales. It implements various measures of concentration and dispersion to describe what researchers variably call agreement, concentration, consensus, dispersion, or polarization among respondents in ordered data. It also implements other related measures to classify distributions. In addition to a generic city-block based concentration measure and a generic dispersion measure, the package implements various measures, including van der Eijk's (2001) <DOI: 10.1023/A:1010374114305> measure of agreement A, measures of concentration by Leik, Tatsle and Wierman, Blair and Lacy, Kvalseth, Berry and Mielke, Reardon, and Garcia-Montalvo and Reynal-Querol. Furthermore, the package provides an implementation of Galtungs AJUS-system to classify distributions, as well as a function to identify the position of multiple modes.
Author: Didier Ruedin [aut, cre] ,
Clem Aeppli [ctb]
Maintainer: Didier Ruedin <didier.ruedin@unine.ch>
Diff between agrmt versions 1.42.12 dated 2023-11-22 and 1.42.19 dated 2026-04-08
DESCRIPTION | 25 +++++++++++------ LICENSE | 2 - MD5 | 18 ++++++------ NEWS | 18 ++++++++++++ build/vignette.rds |binary inst/doc/agrmt.R | 50 +++++++++++++++++------------------ inst/doc/agrmt.Rnw | 74 +++++++++++++++++++++++++++------------------------- inst/doc/agrmt.pdf |binary man/MRQ.Rd | 2 - vignettes/agrmt.Rnw | 74 +++++++++++++++++++++++++++------------------------- 10 files changed, 149 insertions(+), 114 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.22.0 dated 2026-01-21 and 0.23.0 dated 2026-04-08
adbcpostgresql-0.22.0/adbcpostgresql/src/arrow-adbc |only adbcpostgresql-0.23.0/adbcpostgresql/DESCRIPTION | 6 adbcpostgresql-0.23.0/adbcpostgresql/MD5 | 49 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/framework/base_driver.h | 9 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/framework/connection.h | 21 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/framework/objects.cc | 15 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/framework/statement.h | 18 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/framework/status.h | 101 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/postgresql/bind_stream.h | 51 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/postgresql/connection.cc | 3 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/postgresql/copy/writer.h | 298 - adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/postgresql/database.cc | 15 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/postgresql/error.h | 4 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/postgresql/postgres_type.h | 6 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/postgresql/result_helper.cc | 16 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/postgresql/result_reader.cc | 35 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver/sqlite/sqlite.cc | 124 adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver_manager/adbc_driver_manager.cc | 2687 ---------- adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver_manager/adbc_driver_manager_api.cc |only adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver_manager/adbc_driver_manager_driver_loading.cc |only adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver_manager/adbc_driver_manager_internal.h |only adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver_manager/adbc_driver_manager_profiles.cc |only adbcpostgresql-0.23.0/adbcpostgresql/src/c/driver_manager/current_arch.h | 2 adbcpostgresql-0.23.0/adbcpostgresql/src/c/include/arrow-adbc/adbc.h | 5 adbcpostgresql-0.23.0/adbcpostgresql/src/c/include/arrow-adbc/adbc_driver_manager.h | 180 adbcpostgresql-0.23.0/adbcpostgresql/src/c/vendor/nanoarrow/nanoarrow.c | 116 adbcpostgresql-0.23.0/adbcpostgresql/src/c/vendor/nanoarrow/nanoarrow.h | 138 adbcpostgresql-0.23.0/adbcpostgresql/src/c/vendor/nanoarrow/nanoarrow.hpp | 8 28 files changed, 1209 insertions(+), 2698 deletions(-)
More information about adbcpostgresql at CRAN
Permanent link
Title: Impulse-Response Function Analysis for Agent-Based Models
Description: Performing impulse-response function (IRF) analysis of relevant variables of agent-based simulation models, in particular for models described in 'LSD' format. Based on the data produced by the simulation model, it performs both linear and state-dependent IRF analysis, providing the tools required by the Counterfactual Monte Carlo (CMC) methodology (Amendola and Pereira (2024) <doi:10.1016/j.jebo.2024.106811>), including state identification and sensitivity. CMC proposes retrieving the causal effect of shocks by exploiting the opportunity to directly observe the counterfactual in a fully controlled experimental setup. 'LSD' (Laboratory for Simulation Development) is free software available at <https://www.labsimdev.org/>).
Author: Marcelo C. Pereira [aut, cre] ,
Marco Amendola [aut]
Maintainer: Marcelo C. Pereira <mcper@unicamp.br>
Diff between LSDirf versions 0.1.3 dated 2024-04-04 and 0.1.4 dated 2026-04-08
DESCRIPTION | 15 ++++++++------- MD5 | 8 ++++---- build/partial.rdb |binary man/LSDirf-package.Rd | 2 +- man/state.sa.lsd.Rd | 42 ++++++++++++++++++++++++++++-------------- 5 files changed, 41 insertions(+), 26 deletions(-)
Title: Semi-Parametric Estimation with Gaussian Copula
Description: A method for estimating the correlation matrix of the Gaussian copula from the observed data. This package also contains a penalized estimation of the corresponding precision matrix, and enables to generate random vectors that are distributed according to a Gaussian copula.
Author: Julie Cartier [aut],
Florence Jaffrezic [aut],
Gildas Mazo [aut],
Ekaterina Tomilina [aut, cre]
Maintainer: Ekaterina Tomilina <ekaterina.tomilina@inrae.fr>
This is a re-admission after prior archival of version 1.0.0 dated 2025-06-06
Diff between heterocop versions 1.0.0 dated 2025-06-06 and 1.0.1 dated 2026-04-08
DESCRIPTION | 6 MD5 | 8 - R/heterocop.R | 6 build/vignette.rds |binary inst/doc/heterocop.html | 290 ++++++++++++++++++++++++------------------------ 5 files changed, 155 insertions(+), 155 deletions(-)
Title: Dyad Ratios Algorithm
Description: Estimates the Dyad Ratios Algorithm for pooling and smoothing poll estimates. The Dyad Ratios Algorithm smooths both forward and backward in time over polling results allowing differences in both question type and polling house. The result is an estimate of a single latent variable that describes the systematic trend over time in the (noisy) polling results. See James A. Stimson (2018) <doi:10.1177/0759106318761614> and the package's vignette for more details.
Author: Dave Armstrong [cre],
James Stimson [aut]
Maintainer: Dave Armstrong <davearmstrong.ps@gmail.com>
Diff between DyadRatios versions 1.3 dated 2025-10-10 and 1.4 dated 2026-04-08
DESCRIPTION | 10 +- MD5 | 10 +- R/extract.R | 20 +--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/extract-vignette.html | 200 ++++++++++++++++++++--------------------- 6 files changed, 116 insertions(+), 124 deletions(-)
Title: Statistical Tools for Modelling Climate-Health Impacts
Description: Tools for producing climate-health indicators and supporting
official statistics from health and climate data. Implements analytical
workflows for temperature-related mortality, wildfire smoke exposure,
air pollution, suicides related to extreme heat, malaria, and
diarrhoeal disease outcomes, with utilities for descriptive statistics, model
validation, attributable fraction and attributable number estimation,
relative risk estimation, minimum mortality temperature estimation,
and plotting for reporting. These six indicators are endorsed by
the United Nations Statistical Commission for inclusion in the
Global Set of Environment and Climate Change Statistics.
Implemented methods include distributed lag non-linear models (DLNM),
quasi-Poisson time-series regression, case-crossover analysis,
Bayesian spatio-temporal models using the Integrated Nested Laplace
Approximation ('INLA'), and multivariate meta-analysis for
sub-national estimates. The package is based on methods developed
in the S [...truncated...]
Author: Charlie Browning [aut],
Kenechi Omeke [aut, cre],
Etse Yawo Dzakpa [aut],
Gladin Jose [aut],
Matt Pearce [aut],
Ellie Watkins [aut],
Claire Hunt [aut],
Beatrice Byukusenge [aut],
Cassien Habyarimana [aut],
Venuste Nyagahakwa [aut],
Felix Scarbrough [ [...truncated...]
Maintainer: Kenechi Omeke <climate.health@ons.gov.uk>
Diff between climatehealth versions 1.0.0 dated 2026-03-30 and 1.0.1 dated 2026-04-08
DESCRIPTION | 8 +- MD5 | 30 ++++---- NEWS.md | 16 ++++ R/climatehealth-package.R | 116 ++++++++++++++++---------------- R/diseases_shared.R | 54 ++++++++++++-- README.md | 22 ++++-- inst/CITATION | 4 - tests/testthat/helper-utils.R | 10 ++ tests/testthat/test_air_pollution.R | 6 + tests/testthat/test_descriptive_stats.R | 18 +++- tests/testthat/test_diarrhea.R | 3 tests/testthat/test_diseases_shared.R | 3 tests/testthat/test_malaria.R | 3 tests/testthat/test_mental_health.R | 2 tests/testthat/test_temp_mortality.R | 2 tests/testthat/test_wildfire.R | 6 - 16 files changed, 200 insertions(+), 103 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcsqlite versions 0.22.0 dated 2026-01-20 and 0.23.0 dated 2026-04-08
adbcsqlite-0.22.0/adbcsqlite/src/arrow-adbc |only adbcsqlite-0.22.0/adbcsqlite/src/common |only adbcsqlite-0.23.0/adbcsqlite/DESCRIPTION | 6 adbcsqlite-0.23.0/adbcsqlite/MD5 | 58 adbcsqlite-0.23.0/adbcsqlite/src/Makevars.in | 2 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/framework/base_driver.h | 9 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/framework/connection.h | 21 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/framework/objects.cc | 15 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/framework/statement.h | 18 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/framework/status.h | 101 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/postgresql/bind_stream.h | 51 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/postgresql/connection.cc | 8 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/postgresql/copy/writer.h | 298 - adbcsqlite-0.23.0/adbcsqlite/src/c/driver/postgresql/database.cc | 20 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/postgresql/error.h | 4 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/postgresql/postgres_type.h | 6 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/postgresql/postgresql.cc | 5 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/postgresql/result_helper.cc | 21 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/postgresql/result_reader.cc | 40 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/postgresql/statement.cc | 5 adbcsqlite-0.23.0/adbcsqlite/src/c/driver/sqlite/sqlite.cc | 124 adbcsqlite-0.23.0/adbcsqlite/src/c/driver_manager/adbc_driver_manager.cc | 2687 ---------- adbcsqlite-0.23.0/adbcsqlite/src/c/driver_manager/adbc_driver_manager_api.cc |only adbcsqlite-0.23.0/adbcsqlite/src/c/driver_manager/adbc_driver_manager_driver_loading.cc |only adbcsqlite-0.23.0/adbcsqlite/src/c/driver_manager/adbc_driver_manager_internal.h |only adbcsqlite-0.23.0/adbcsqlite/src/c/driver_manager/adbc_driver_manager_profiles.cc |only adbcsqlite-0.23.0/adbcsqlite/src/c/driver_manager/current_arch.h | 2 adbcsqlite-0.23.0/adbcsqlite/src/c/include/arrow-adbc/adbc.h | 5 adbcsqlite-0.23.0/adbcsqlite/src/c/include/arrow-adbc/adbc_driver_manager.h | 180 adbcsqlite-0.23.0/adbcsqlite/src/c/vendor/nanoarrow/nanoarrow.c | 116 adbcsqlite-0.23.0/adbcsqlite/src/c/vendor/nanoarrow/nanoarrow.h | 138 adbcsqlite-0.23.0/adbcsqlite/src/c/vendor/nanoarrow/nanoarrow.hpp | 8 32 files changed, 1243 insertions(+), 2705 deletions(-)
Title: Streamlined Workflow for UK Biobank Data Extraction, Analysis,
and Visualization
Description: Provides a streamlined workflow for UK Biobank cloud-based
analysis on the Research Analysis Platform (RAP). Includes tools for
phenotype extraction and decoding, variable derivation, survival and
association analysis, genetic risk score computation, and
publication-quality visualization. For details on the UK Biobank
resource, see Bycroft et al. (2018) <doi:10.1038/s41586-018-0579-z>.
Author: Yibin Zhou [aut, cre]
Maintainer: Yibin Zhou <evanzhou.bio@gmail.com>
Diff between ukbflow versions 0.3.3 dated 2026-04-07 and 0.3.4 dated 2026-04-08
DESCRIPTION | 6 ++-- MD5 | 42 +++++++++++++++--------------- NEWS.md | 13 +++++++++ README.md | 10 +++++-- inst/WORDLIST | 5 ++- inst/doc/get-started.R | 4 ++ inst/doc/get-started.Rmd | 4 ++ inst/doc/get-started.html | 6 +++- inst/doc/install.R | 15 +++++----- inst/doc/install.Rmd | 25 ++++++++--------- inst/doc/install.html | 33 +++++++++++------------ tests/testthat/test-integration-assoc.R | 2 + tests/testthat/test-integration-auth.R | 1 tests/testthat/test-integration-decode.R | 1 tests/testthat/test-integration-derive.R | 1 tests/testthat/test-integration-extract.R | 1 tests/testthat/test-integration-fetch.R | 1 tests/testthat/test-integration-grs.R | 2 + tests/testthat/test-integration-job.R | 1 tests/testthat/test-integration-plot.R | 2 + vignettes/get-started.Rmd | 4 ++ vignettes/install.Rmd | 25 ++++++++--------- 22 files changed, 125 insertions(+), 79 deletions(-)
Title: Tools for Creating and Manipulating RO-Crates
Description: Provides tools for creating, manipulating and reading Research
Object Crates (RO-Crates), a lightweight approach to packaging research
data with structured metadata. Includes utilities for metadata generation,
entity management, validation and reading existing RO-Crates following
the specification <https://w3id.org/ro/crate/1.2/>.
Author: Roberto Villegas-Diaz [aut, cre] ,
Rebecca Wilson [aut] ,
Olly Butters [aut] ,
Stuart Wheater [aut] ,
Research Object community [cph]
Maintainer: Roberto Villegas-Diaz <r.villegas-diaz@outlook.com>
Diff between rocrateR versions 0.0.1 dated 2025-11-07 and 0.1.0 dated 2026-04-08
rocrateR-0.0.1/rocrateR/R/utils-url.R |only rocrateR-0.0.1/rocrateR/man/add_entities.Rd |only rocrateR-0.0.1/rocrateR/man/bagit_declaration.Rd |only rocrateR-0.0.1/rocrateR/man/bagit_manifest.Rd |only rocrateR-0.0.1/rocrateR/man/dot-capture_extra_entities.Rd |only rocrateR-0.0.1/rocrateR/man/dot-find_id_index.Rd |only rocrateR-0.0.1/rocrateR/man/dot-find_type_index.Rd |only rocrateR-0.0.1/rocrateR/man/dot-is_valid_url.Rd |only rocrateR-0.0.1/rocrateR/man/dot-validate_entity.Rd |only rocrateR-0.0.1/rocrateR/man/dot-validate_entity_overview.Rd |only rocrateR-0.0.1/rocrateR/man/dot-validate_rocrate_bag.Rd |only rocrateR-0.0.1/rocrateR/man/remove_entities.Rd |only rocrateR-0.1.0/rocrateR/DESCRIPTION | 35 rocrateR-0.1.0/rocrateR/LICENSE | 2 rocrateR-0.1.0/rocrateR/MD5 | 99 rocrateR-0.1.0/rocrateR/NAMESPACE | 20 rocrateR-0.1.0/rocrateR/NEWS.md | 23 rocrateR-0.1.0/rocrateR/R/entity.R | 436 ++- rocrateR-0.1.0/rocrateR/R/print.R | 108 rocrateR-0.1.0/rocrateR/R/profiles.R |only rocrateR-0.1.0/rocrateR/R/rocrate.R | 93 rocrateR-0.1.0/rocrateR/R/summary.R |only rocrateR-0.1.0/rocrateR/R/utils-bag.R | 1219 +++++++--- rocrateR-0.1.0/rocrateR/R/utils-entity.R | 93 rocrateR-0.1.0/rocrateR/R/utils-file.R |only rocrateR-0.1.0/rocrateR/R/utils-json.R | 81 rocrateR-0.1.0/rocrateR/R/utils-rocrate.R | 960 +++++++ rocrateR-0.1.0/rocrateR/R/utils-validation.R |only rocrateR-0.1.0/rocrateR/README.md | 646 ----- rocrateR-0.1.0/rocrateR/build/partial.rdb |binary rocrateR-0.1.0/rocrateR/build/vignette.rds |only rocrateR-0.1.0/rocrateR/inst |only rocrateR-0.1.0/rocrateR/man/add_author.Rd |only rocrateR-0.1.0/rocrateR/man/add_dataset.Rd |only rocrateR-0.1.0/rocrateR/man/add_entity.Rd | 22 rocrateR-0.1.0/rocrateR/man/add_entity_value.Rd | 19 rocrateR-0.1.0/rocrateR/man/add_notebook.Rd |only rocrateR-0.1.0/rocrateR/man/add_project.Rd |only rocrateR-0.1.0/rocrateR/man/add_readme.Rd |only rocrateR-0.1.0/rocrateR/man/add_software.Rd |only rocrateR-0.1.0/rocrateR/man/add_workflow.Rd |only rocrateR-0.1.0/rocrateR/man/bag_rocrate.Rd | 47 rocrateR-0.1.0/rocrateR/man/crate_project.Rd |only rocrateR-0.1.0/rocrateR/man/entity.Rd | 18 rocrateR-0.1.0/rocrateR/man/extract_content.Rd |only rocrateR-0.1.0/rocrateR/man/get_entity.Rd | 12 rocrateR-0.1.0/rocrateR/man/is_rocrate.Rd | 10 rocrateR-0.1.0/rocrateR/man/is_rocrate_bag.Rd | 35 rocrateR-0.1.0/rocrateR/man/load_rocrate.Rd |only rocrateR-0.1.0/rocrateR/man/load_rocrate_bag.Rd |only rocrateR-0.1.0/rocrateR/man/print.rocrate.Rd | 4 rocrateR-0.1.0/rocrateR/man/remove_entity.Rd | 20 rocrateR-0.1.0/rocrateR/man/rocrateR-package.Rd | 11 rocrateR-0.1.0/rocrateR/man/summary.entity.Rd |only rocrateR-0.1.0/rocrateR/man/summary.rocrate.Rd |only rocrateR-0.1.0/rocrateR/man/unbag_rocrate.Rd | 26 rocrateR-0.1.0/rocrateR/man/validate_rocrate.Rd |only rocrateR-0.1.0/rocrateR/tests/testthat/test-entity.R | 187 - rocrateR-0.1.0/rocrateR/tests/testthat/test-print.R | 17 rocrateR-0.1.0/rocrateR/tests/testthat/test-rocrate.R | 4 rocrateR-0.1.0/rocrateR/tests/testthat/test-utils-bag.R | 664 ++++- rocrateR-0.1.0/rocrateR/tests/testthat/test-utils-entity.R | 6 rocrateR-0.1.0/rocrateR/tests/testthat/test-utils-json.R | 34 rocrateR-0.1.0/rocrateR/tests/testthat/test-utils-rocrate.R | 497 +++- rocrateR-0.1.0/rocrateR/tests/testthat/test-utils-validation.R |only rocrateR-0.1.0/rocrateR/vignettes |only 66 files changed, 3956 insertions(+), 1492 deletions(-)
Title: Assessing Package Risk Metrics
Description: A reliable and validated tool that captures detailed risk metrics
such as R 'CMD' check, test coverage, traceability matrix, documentation, dependencies,
reverse dependencies, suggested dependency analysis, repository data,
and enhanced reporting for R packages that are local or stored
on remote repositories such as GitHub, CRAN, and Bioconductor.
Author: Edward Gillian [cre, aut] ,
Hugo Bottois [aut] ,
Paulin Charliquart [aut],
Andre Couturier [aut],
Sanofi [cph, fnd]
Maintainer: Edward Gillian <edward.gillian-ext@sanofi.com>
Diff between risk.assessr versions 3.1.0 dated 2026-03-25 and 3.1.1 dated 2026-04-08
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Title: Project Risk Analysis
Description: Data analysis for Project Risk Management via the Second Moment Method,
Monte Carlo Simulation, Contingency Analysis, Sensitivity Analysis, Earned Value Management,
Learning Curves, Bayesian Methods, and more.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between PRA versions 0.3.0 dated 2024-08-20 and 0.4.0 dated 2026-04-08
PRA-0.3.0/PRA/LICENSE |only PRA-0.4.0/PRA/DESCRIPTION | 20 PRA-0.4.0/PRA/MD5 | 190 ++- PRA-0.4.0/PRA/NAMESPACE | 45 PRA-0.4.0/PRA/NEWS.md | 26 PRA-0.4.0/PRA/R/PRA-package.R |only PRA-0.4.0/PRA/R/app.R |only PRA-0.4.0/PRA/R/chat.R |only PRA-0.4.0/PRA/R/contingency.R | 85 + PRA-0.4.0/PRA/R/cormat.R | 54 PRA-0.4.0/PRA/R/dsm.R | 231 +++- PRA-0.4.0/PRA/R/evm.R | 844 ++++++++++++++ PRA-0.4.0/PRA/R/inference.R |only PRA-0.4.0/PRA/R/learning.R |only PRA-0.4.0/PRA/R/mcs.R | 129 ++ PRA-0.4.0/PRA/R/rag.R |only PRA-0.4.0/PRA/R/sensitivity.R | 94 + PRA-0.4.0/PRA/R/sigmoidal.R | 374 +++++- PRA-0.4.0/PRA/R/smm.R | 142 ++ PRA-0.4.0/PRA/R/srr-stats-standards.R |only PRA-0.4.0/PRA/R/tools.R |only PRA-0.4.0/PRA/README.md | 202 ++- PRA-0.4.0/PRA/build/vignette.rds |binary PRA-0.4.0/PRA/inst/PRA_hex_sticker.png |only PRA-0.4.0/PRA/inst/doc/Bayes.R |only PRA-0.4.0/PRA/inst/doc/Bayes.Rmd |only PRA-0.4.0/PRA/inst/doc/Bayes.html |only PRA-0.4.0/PRA/inst/doc/DSM.R |only PRA-0.4.0/PRA/inst/doc/DSM.Rmd |only 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|only PRA-0.4.0/PRA/vignettes/DSM.Rmd |only PRA-0.4.0/PRA/vignettes/MCS.Rmd | 188 +-- PRA-0.4.0/PRA/vignettes/SMM.Rmd | 178 +-- PRA-0.4.0/PRA/vignettes/agent.Rmd |only PRA-0.4.0/PRA/vignettes/evm.Rmd | 246 +++- PRA-0.4.0/PRA/vignettes/sigmoidal.Rmd | 153 +- 130 files changed, 7673 insertions(+), 1476 deletions(-)
Title: Tools for Processing and Analyzing Files from the Hydrological
Catchment Model HYPE
Description: Work with model files (setup, input, output) from
the hydrological catchment model HYPE: Streamlined file import and export, standard
evaluation plot routines, diverse post-processing and aggregation routines
for hydrological model analysis. The HYPEtools package is also archived at <doi:10.5281/zenodo.7627955>
and can be cited in publications with Brendel et al. (2024) <doi:10.1016/j.envsoft.2024.106094>.
Author: Rene Capell [aut, cre] ,
Conrad Brendel [aut] ,
Jafet Andersson [ctb],
David Gustafsson [ctb],
Jude Musuuza [ctb],
Jude Lubega [ctb]
Maintainer: Rene Capell <hypetools.rene@smhi.se>
Diff between HYPEtools versions 1.6.6 dated 2025-08-19 and 1.6.7 dated 2026-04-08
DESCRIPTION | 14 MD5 | 94 ++-- NAMESPACE | 10 NEWS.md | 16 R/function_AnnualRegime.R | 8 R/function_GroupSLCClasses.R | 4 R/function_PlotAnnualRegime.R | 2 R/function_PlotBasinOutput.R | 472 +++++++++++++++++--- R/function_PlotBasinSummary.R | 643 +++++++++++++++++++++++++++- R/function_PlotEvaluationMaps.R |only R/function_PlotMapPoints.R | 13 R/function_PlotParValues.R |only R/function_PlotPerformanceByAttribute.R | 10 R/function_PlotSubbasinRouting.R | 34 - R/function_ScalePar.R | 6 R/function_UpstreamGroupSLCClasses.R | 6 R/function_VariableLookup.R | 20 R/sysdata.rda |binary build/partial.rdb |binary build/vignette.rds |binary inst/demo_model/GeoData.txt | 52 +- inst/demo_model/info.txt | 3 inst/demo_model/results/0003587.txt | 730 ++++++++++++++++---------------- inst/demo_model/results/mapCOUT.txt | 46 +- inst/demo_model/results/mapCRUN.txt | 34 - inst/demo_model/results/mapEVAP.txt | 34 - inst/demo_model/results/mapSM13.txt | 34 - inst/demo_model/results/mapSNOW.txt | 34 - inst/demo_model/results/mapSOIM.txt | 34 - inst/demo_model/results/simass.txt | 32 - inst/demo_model/results/subass1.txt | 2 inst/demo_model/results/timeCOUT.txt | 730 ++++++++++++++++---------------- inst/doc/analyze_hype_ts.html | 443 +++++++++---------- inst/doc/basin_characteristics.html | 5 inst/doc/basin_network.html | 7 inst/doc/import_files.html | 89 ++- inst/doc/modify_par.html | 5 inst/doc/plot_map_statistics.html | 13 man/AnnualRegime.Rd | 2 man/GroupSLCClasses.Rd | 4 man/PlotAnnualRegime.Rd | 2 man/PlotBasinOutput.Rd | 6 man/PlotBasinSummary.Rd | 4 man/PlotEvaluationMaps.Rd |only man/PlotMapPoints.Rd | 5 man/PlotParValues.Rd |only man/PlotPerformanceByAttribute.Rd | 466 ++++++++++---------- man/PlotSubbasinRouting.Rd | 4 man/ScalePar.Rd | 2 man/UpstreamGroupSLCClasses.Rd | 6 50 files changed, 2591 insertions(+), 1589 deletions(-)
Title: Store and Retrieve Data.frames in a Git Repository
Description: The git2rdata package is an R package for writing and reading
dataframes as plain text files. A metadata file stores important
information. 1) Storing metadata allows to maintain the classes of
variables. By default, git2rdata optimizes the data for file storage.
The optimization is most effective on data containing factors. The
optimization makes the data less human readable. The user can turn
this off when they prefer a human readable format over smaller files.
Details on the implementation are available in vignette("plain_text",
package = "git2rdata"). 2) Storing metadata also allows smaller row
based diffs between two consecutive commits. This is a useful feature
when storing data as plain text files under version control. Details
on this part of the implementation are available in
vignette("version_control", package = "git2rdata"). Although we
envisioned git2rdata with a git workflow in mind, you can use it in
combination with other version control systems like subversion [...truncated...]
Author: Thierry Onkelinx [aut, cre] ),
Floris Vanderhaeghe [ctb] ),
Peter Desmet [ctb] ),
Els Lommelen [ctb] ),
Research Institute for Nature and Forest [cph, fnd]
Maintainer: Thierry Onkelinx <thierry.onkelinx@inbo.be>
Diff between git2rdata versions 0.5.1 dated 2025-12-10 and 0.5.2 dated 2026-04-08
DESCRIPTION | 14 +- MD5 | 43 ++++--- NEWS.md | 11 + R/read_vc.R | 11 + R/rename_variable.R | 5 R/utils.R | 187 ++++++++++++++++++++++++++++++++ R/write_vc.R | 63 ++++++++++ build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 6 - inst/doc/convert.R |only inst/doc/convert.Rmd |only inst/doc/convert.html |only inst/doc/data_package.R |only inst/doc/data_package.Rmd |only inst/doc/data_package.html |only inst/doc/metadata.html | 8 - inst/doc/plain_text.html | 31 ++--- inst/doc/version_control.html | 92 ++++++++------- inst/doc/workflow.html | 49 ++++---- inst/en_gb.dic | 1 man/rename_variable.Rd | 3 man/write_vc.Rd | 13 +- tests/testthat/test_g_rename_variable.R | 21 +++ tests/testthat/test_h_convert.R |only vignettes/convert.Rmd |only vignettes/data_package.Rmd |only 27 files changed, 437 insertions(+), 121 deletions(-)
Title: 'C++' Implementations of Functional Enrichment Analysis
Description: Fast implementations of functional enrichment analysis methods using 'C++' via 'Rcpp'.
Currently provides Over-Representation Analysis (ORA) and Gene Set Enrichment Analysis (GSEA).
The multilevel GSEA algorithm is derived from the 'fgsea' package.
Methods are described in Subramanian et al. (2005) <doi:10.1073/pnas.0506580102> and Korotkevich et al. (2021) <doi:10.1101/060012>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between enrichit versions 0.1.3 dated 2026-03-10 and 0.1.4 dated 2026-04-08
DESCRIPTION | 6 - MD5 | 22 ++-- NEWS.md | 8 + R/RcppExports.R | 8 - R/gsea.R | 98 ++++++++++++++---- R/utilities.R | 20 ++- inst/doc/enrichit.html | 40 ++++--- src/RcppExports.cpp | 18 +-- src/gsea.cpp | 20 ++- src/gsea_multilevel.cpp | 197 +++++++++++++++---------------------- tests/testthat.R |only tests/testthat/test-gsea.R | 16 +-- tests/testthat/test-gson-helpers.R |only 13 files changed, 252 insertions(+), 201 deletions(-)
More information about weightedVoronoi at CRAN
Permanent link
More information about sparsecommunity at CRAN
Permanent link
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson [aut, cre] ,
Evan Sergeant [aut],
Cord Heuer [ctb],
Telmo Nunes [ctb],
Cord Heuer [ctb],
Jonathon Marshall [ctb],
Javier Sanchez [ctb],
Ron Thornton [ctb],
Jeno Reiczigel [ctb],
Jim Robison-Cox [ctb],
Paola Sebastiani [ctb],
Peter Soly [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.91 dated 2026-02-23 and 2.0.92 dated 2026-04-08
DESCRIPTION | 8 MD5 | 24 - NEWS | 17 - R/epi.2by2.R | 575 ++++++++++++++++++++++++++++------- inst/doc/epiR_descriptive_epi.html | 18 - inst/doc/epiR_diagnostic_tests.html | 20 - inst/doc/epiR_measures_of_assoc.R | 16 inst/doc/epiR_measures_of_assoc.Rmd | 24 - inst/doc/epiR_measures_of_assoc.html | 114 ++++-- inst/doc/epiR_sample_size.html | 4 inst/doc/epiR_surveillance.html | 14 man/epi.2by2.Rd | 90 +++-- vignettes/epiR_measures_of_assoc.Rmd | 24 - 13 files changed, 680 insertions(+), 268 deletions(-)
Title: Low-Level R to Java Interface
Description: Low-level interface to Java VM very much like .C/.Call and friends. Allows creation of objects, calling methods and accessing fields.
Author: Simon Urbanek [aut, cre, cph]
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between rJava versions 1.0-16 dated 2026-03-15 and 1.0-18 dated 2026-04-08
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NAMESPACE | 2 +- NEWS | 11 +++++++++++ inst/jri/JRIEngine.jar |binary inst/jri/REngine.jar |binary src/jri/src/Rcallbacks.c | 3 ++- src/jri/src/Rdecl.h | 18 ++++++++++++++---- src/jri/src/Rengine.c | 7 ++++++- src/jri/src/Rinit.c | 5 +---- src/rJava.h | 2 +- 11 files changed, 49 insertions(+), 25 deletions(-)
Title: Thurstonian CFA and Thurstonian IRT Modeling
Description: Fit Thurstonian forced-choice models (CFA (simple and factor) and IRT) in R. This package allows for the analysis of item response modeling (IRT) as well as confirmatory factor analysis (CFA) in the Thurstonian framework. Currently, estimation can be performed by 'Mplus' and 'lavaan'. References:
Brown & Maydeu-Olivares (2011) <doi:10.1177/0013164410375112>;
Jansen, M. T., & Schulze, R. (in review). The Thurstonian linked block design: Improving Thurstonian modeling for paired comparison and ranking data.;
Maydeu-Olivares & Böckenholt (2005) <doi:10.1037/1082-989X.10.3.285>.
Author: Markus Thomas Jansen [aut, cre]
Maintainer: Markus Thomas Jansen <mjansen@uni-wuppertal.de>
Diff between ThurMod versions 1.1.11 dated 2023-09-19 and 1.1.15 dated 2026-04-08
ThurMod-1.1.11/ThurMod/R/split.matrix.R |only ThurMod-1.1.15/ThurMod/DESCRIPTION | 14 - ThurMod-1.1.15/ThurMod/MD5 | 28 +- ThurMod-1.1.15/ThurMod/R/get.xblocks.multidim.R | 6 ThurMod-1.1.15/ThurMod/R/get.xblocks.random.R | 4 ThurMod-1.1.15/ThurMod/R/mod.matrices.R | 2 ThurMod-1.1.15/ThurMod/R/read.mplus.R | 47 ++++ ThurMod-1.1.15/ThurMod/R/sim.data.R | 22 +- ThurMod-1.1.15/ThurMod/R/split_matrix.R |only ThurMod-1.1.15/ThurMod/R/syntax.mplus.R | 58 +++++ ThurMod-1.1.15/ThurMod/build/partial.rdb |binary ThurMod-1.1.15/ThurMod/build/vignette.rds |binary ThurMod-1.1.15/ThurMod/inst/doc/vignette.R | 254 ++++++++++++------------ ThurMod-1.1.15/ThurMod/inst/doc/vignette.html | 5 ThurMod-1.1.15/ThurMod/man/sim.data.Rd | 6 ThurMod-1.1.15/ThurMod/man/syntax.mplus.Rd | 9 16 files changed, 278 insertions(+), 177 deletions(-)
Title: Functionalities for the 'INLA' Package
Description: Contain code to work with a C struct, in short
cgeneric, to define a Gaussian Markov random (GMRF) model.
The cgeneric contain code to specify GMRF elements such as
the graph and the precision matrix, and also the initial and
prior for its parameters, useful for model inference.
It can be accessed from a C program and is the recommended
way to implement new GMRF models in the 'INLA' package
(<https://www.r-inla.org>).
The 'INLAtools' implement functions to evaluate
each one of the model specifications from R.
The implemented functionalities leverage the use
of 'cgeneric' models and provide a way to debug
the code as well to work with the prior for the
model parameters and to sample from it.
The `generic0` can be used to implement intrinsic models with the
scaling as proposed in
Sørbye & Rue (2014) <doi:10.1016/j.spasta.2013.06.004>,
and the required contraints.
A very useful functionality is the Kronecker product method
that creates a new model from multiple cgeneric mo [...truncated...]
Author: Elias Teixeira Krainski [cre, aut, cph] ,
Finn Lindgren [aut] ,
Haavard Rue’ [aut]
Maintainer: Elias Teixeira Krainski <eliaskrainski@gmail.com>
Diff between INLAtools versions 0.1.1 dated 2026-04-03 and 0.1.2 dated 2026-04-08
DESCRIPTION | 6 +++--- MD5 | 13 ++++++++----- NAMESPACE | 3 +++ R/cgeneric_utils.R | 27 ++++++++++++++++++++++++++- R/pc_utils.R |only man/pc-utils.Rd |only src/Makevars | 9 ++++++++- src/Makevars.win |only src/cgeneric_get.c | 4 ---- 9 files changed, 48 insertions(+), 14 deletions(-)
Title: Multivariate Exploratory Data Analysis and Data Mining
Description: Exploratory data analysis methods to summarize, visualize and describe datasets. The main principal component methods are available, those with the largest potential in terms of applications: principal component analysis (PCA) when variables are quantitative, correspondence analysis (CA) and multiple correspondence analysis (MCA) when variables are categorical, Multiple Factor Analysis when variables are structured in groups, etc. and hierarchical cluster analysis. F. Husson, S. Le and J. Pages (2017).
Author: Francois Husson [aut, cre] ,
Julie Josse [aut],
Sebastien Le [aut],
Jeremy Mazet [aut]
Maintainer: Francois Husson <francois.husson@institut-agro.fr>
Diff between FactoMineR versions 2.13 dated 2026-01-12 and 2.14 dated 2026-04-08
DESCRIPTION | 8 +++--- MD5 | 30 ++++++++++++------------ R/CA.R | 41 +++++++++++++++++++++++++-------- R/DMFA.R | 8 +++--- R/FAMD.R | 40 ++++++++++++++++++++++++++------ R/HCPC.R | 10 +++++--- R/MCA.R | 68 ++++++++++++++++++++++++++++++++++++++++--------------- R/MFA.R | 7 ++--- R/PCA.R | 53 ++++++++++++++++++++++++++++++------------ R/catdes.r | 11 ++++++-- R/condes.r | 8 ++++-- R/plot.DMFA.R | 4 +-- R/plot.MFA.R | 8 ++++-- R/plotellipses.r | 4 +-- R/prefpls.r | 4 +-- man/plot.PCA.Rd | 2 - 16 files changed, 212 insertions(+), 94 deletions(-)
Title: Fake Web Apps for HTTP Testing
Description: Create a web app that makes it easier to test web clients
without using the internet. It includes a web app framework with path
matching, parameters and templates. Can parse various 'HTTP' request
bodies. Can send 'JSON' data or files from the disk. Includes a web
app that implements the 'httpbin.org' web service.
Author: Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd] ,
Civetweb contributors [ctb] ,
Redoc contributors [ctb] ,
L. Peter Deutsch [ctb] ,
Martin Purschke [ctb] ,
Aladdin Enterprises [cph] ,
Maelle Salmon [ctb]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between webfakes versions 1.4.0 dated 2025-06-24 and 1.4.1 dated 2026-04-08
DESCRIPTION | 6 ++-- MD5 | 10 +++---- NEWS.md | 6 +++- src/cleancall.c | 6 +++- src/rweb.c | 49 +++++++++++++++++++---------------- tests/testthat/_snaps/app-process.md | 4 +- 6 files changed, 47 insertions(+), 34 deletions(-)
Title: Simplified Vertex-Wise Analyses of Whole-Brain and Subcortical
Surface
Description: Provides functions to run statistical analyses on
surface-based neuroimaging data, computing measures including cortical
thickness and surface area of the whole-brain and of the hippocampi.
It can make use of 'FreeSurfer', 'fMRIprep', 'XCP-D', 'HCP' and 'CAT12'
preprocessed datasets, 'HippUnfold' hippocampal outputs and
'SubCortexMesh' subcortical outputs for a given sample by
restructuring the data values into a single file. The single file can
then be used by the package for analyses independently from its base
dataset and without need for its access.
Author: Junhong Yu [aut] ,
Charly Billaud [aut, cre]
Maintainer: Charly Billaud <charly.billaud@ntu.edu.sg>
Diff between VertexWiseR versions 1.5.0 dated 2026-03-12 and 1.5.1 dated 2026-04-08
VertexWiseR-1.5.0/VertexWiseR/R/ASEGvextract.R |only VertexWiseR-1.5.0/VertexWiseR/man/ASEGvextract.Rd |only VertexWiseR-1.5.0/VertexWiseR/vignettes/surfextract.jpg |only VertexWiseR-1.5.1/VertexWiseR/DESCRIPTION | 19 VertexWiseR-1.5.1/VertexWiseR/MD5 | 57 +- VertexWiseR-1.5.1/VertexWiseR/NAMESPACE | 2 VertexWiseR-1.5.1/VertexWiseR/NEWS.md | 13 VertexWiseR-1.5.1/VertexWiseR/R/RFT_vertex_analysis.R | 18 VertexWiseR-1.5.1/VertexWiseR/R/SCMvextract.R |only VertexWiseR-1.5.1/VertexWiseR/R/TFCE_vertex_analysis.R | 32 - VertexWiseR-1.5.1/VertexWiseR/R/TFCE_vertex_analysis_mixed.R | 15 VertexWiseR-1.5.1/VertexWiseR/R/other_functions.R | 275 --------- VertexWiseR-1.5.1/VertexWiseR/R/other_functions_scm.R |only VertexWiseR-1.5.1/VertexWiseR/R/plot_overlay_surf.r | 37 - VertexWiseR-1.5.1/VertexWiseR/R/plot_surf.R | 16 VertexWiseR-1.5.1/VertexWiseR/R/plot_surf3d.R | 93 ++- VertexWiseR-1.5.1/VertexWiseR/R/smooth_surf.R | 16 VertexWiseR-1.5.1/VertexWiseR/README.md | 2 VertexWiseR-1.5.1/VertexWiseR/inst/doc/Python_troubleshooting.html | 2 VertexWiseR-1.5.1/VertexWiseR/inst/doc/VertexWiseR_Example_3.html | 283 +++++----- VertexWiseR-1.5.1/VertexWiseR/inst/doc/VertexWiseR_surface_extraction.html | 198 +++--- VertexWiseR-1.5.1/VertexWiseR/inst/python/surfplot_subcortical.py | 144 +++-- VertexWiseR-1.5.1/VertexWiseR/man/SCMvextract.Rd |only VertexWiseR-1.5.1/VertexWiseR/man/figures/Flowchart.JPG |binary VertexWiseR-1.5.1/VertexWiseR/man/plot_overlay_surf.Rd | 2 VertexWiseR-1.5.1/VertexWiseR/man/plot_surf.Rd | 2 VertexWiseR-1.5.1/VertexWiseR/man/plot_surf3d.Rd | 2 VertexWiseR-1.5.1/VertexWiseR/vignettes/Flowchart_extraction.jpg |only VertexWiseR-1.5.1/VertexWiseR/vignettes/Python_troubleshooting.Rmd | 2 VertexWiseR-1.5.1/VertexWiseR/vignettes/VertexWiseR_Example_3.Rmd | 80 +- VertexWiseR-1.5.1/VertexWiseR/vignettes/VertexWiseR_plot_overlay.Rmd | 2 VertexWiseR-1.5.1/VertexWiseR/vignettes/VertexWiseR_surface_extraction.Rmd | 86 +-- VertexWiseR-1.5.1/VertexWiseR/vignettes/references.bib | 15 33 files changed, 687 insertions(+), 726 deletions(-)
Title: Additive Mixed Meta-Analysis with Spline Meta-Regression
Description: Fit additive mixed meta-analysis (AMMA) models, extending
the 'mixmeta' package <https://cran.r-project.org/package=mixmeta>
to allow for spline-based meta-regression. Functions combine features of
'mgcv' <https://cran.r-project.org/package=mgcv> for building spline
components and 'mixmeta' for estimating general mixed-effects meta-analysis
models.
Author: Perry de Valpine [aut] ,
Marcus Beck [aut, cre]
Maintainer: Marcus Beck <mbeck@tbep.org>
Diff between splinemixmeta versions 1.0.0 dated 2026-03-30 and 1.0.1 dated 2026-04-08
DESCRIPTION | 6 ++-- MD5 | 10 +++--- NEWS.md | 4 ++ README.md | 1 tests/testthat/test-make_smm_smooth.R | 16 ++++++++++ tests/testthat/test-splinemixmeta.R | 50 +++++++++++++++++----------------- 6 files changed, 53 insertions(+), 34 deletions(-)
Title: Analyze Dependency Heaviness of R Packages
Description: A new metric named 'dependency heaviness' is proposed that measures the number
of additional dependency packages that a parent package brings to its child package
and are unique to the dependency packages imported by all other parents.
The dependency heaviness analysis is visualized by a customized heatmap.
The package is described in <doi:10.1093/bioinformatics/btac449>.
We have also performed the dependency heaviness analysis on the CRAN/Bioconductor
package ecosystem, described in <doi:10.1016/j.jss.2023.111610>.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between pkgndep versions 1.99.3 dated 2023-10-13 and 2.0.0 dated 2026-04-08
pkgndep-1.99.3/pkgndep/R/check_pkg.R |only pkgndep-1.99.3/pkgndep/R/dependency.R |only pkgndep-1.99.3/pkgndep/R/load_pkg.R |only pkgndep-1.99.3/pkgndep/R/website.R |only pkgndep-1.99.3/pkgndep/inst/doc/database.Rmd |only pkgndep-1.99.3/pkgndep/inst/doc/database.html |only pkgndep-1.99.3/pkgndep/inst/extdata/analysis.R |only pkgndep-1.99.3/pkgndep/inst/extdata/install_all_r_pkgs.R |only pkgndep-1.99.3/pkgndep/inst/extdata/lt_history.R |only pkgndep-1.99.3/pkgndep/inst/extdata/timeline.R |only pkgndep-1.99.3/pkgndep/inst/website |only pkgndep-1.99.3/pkgndep/man/ALL_BIOC_RELEASES.Rd |only pkgndep-1.99.3/pkgndep/man/all_pkg_stat_snapshot.Rd |only pkgndep-1.99.3/pkgndep/man/check_pkg.Rd |only pkgndep-1.99.3/pkgndep/man/child_dependency.Rd |only pkgndep-1.99.3/pkgndep/man/dependency_database.Rd |only pkgndep-1.99.3/pkgndep/man/dependency_heatmap.Rd |only pkgndep-1.99.3/pkgndep/man/dependency_report.Rd |only pkgndep-1.99.3/pkgndep/man/dependency_website.Rd |only pkgndep-1.99.3/pkgndep/man/downstream_dependency.Rd |only pkgndep-1.99.3/pkgndep/man/get_all_functions_imported_to_children.Rd |only pkgndep-1.99.3/pkgndep/man/gini_index.Rd |only pkgndep-1.99.3/pkgndep/man/heaviness_database.Rd |only pkgndep-1.99.3/pkgndep/man/heaviness_from_upstream.Rd |only pkgndep-1.99.3/pkgndep/man/heaviness_on_children.Rd |only pkgndep-1.99.3/pkgndep/man/heaviness_on_downstream.Rd |only pkgndep-1.99.3/pkgndep/man/heaviness_report.Rd |only pkgndep-1.99.3/pkgndep/man/is_parent.Rd |only pkgndep-1.99.3/pkgndep/man/is_upstream.Rd |only pkgndep-1.99.3/pkgndep/man/load_all_pkg_dep.Rd |only pkgndep-1.99.3/pkgndep/man/load_from_heaviness_db.Rd |only pkgndep-1.99.3/pkgndep/man/load_heaviness_timeline.Rd |only pkgndep-1.99.3/pkgndep/man/load_pkg_description.Rd |only pkgndep-1.99.3/pkgndep/man/load_pkg_downstream_dependency_path_snapshot.Rd |only pkgndep-1.99.3/pkgndep/man/load_pkg_namespace.Rd |only pkgndep-1.99.3/pkgndep/man/load_pkg_stat_snapshot.Rd |only pkgndep-1.99.3/pkgndep/man/loaded_packages.Rd |only pkgndep-1.99.3/pkgndep/man/parent_dependency.Rd |only pkgndep-1.99.3/pkgndep/man/pkgndep.rd |only pkgndep-1.99.3/pkgndep/man/plot.pkgndep.Rd |only pkgndep-1.99.3/pkgndep/man/required_dependency_packages.Rd |only pkgndep-1.99.3/pkgndep/man/upstream_dependency.Rd |only pkgndep-1.99.3/pkgndep/vignettes/database.Rmd |only pkgndep-2.0.0/pkgndep/DESCRIPTION | 27 pkgndep-2.0.0/pkgndep/LICENSE | 2 pkgndep-2.0.0/pkgndep/MD5 | 128 +-- pkgndep-2.0.0/pkgndep/NAMESPACE | 72 -- pkgndep-2.0.0/pkgndep/NEWS | 6 pkgndep-2.0.0/pkgndep/R/db.R | 63 - pkgndep-2.0.0/pkgndep/R/global.R | 130 --- pkgndep-2.0.0/pkgndep/R/heaviness.R | 321 +-------- pkgndep-2.0.0/pkgndep/R/load_data.R | 327 ---------- pkgndep-2.0.0/pkgndep/R/pkgndep.R | 234 +------ pkgndep-2.0.0/pkgndep/R/plot.R | 90 +- pkgndep-2.0.0/pkgndep/R/report.R | 43 - pkgndep-2.0.0/pkgndep/R/utils.R | 16 pkgndep-2.0.0/pkgndep/R/zzz.R | 22 pkgndep-2.0.0/pkgndep/build/vignette.rds |binary pkgndep-2.0.0/pkgndep/inst/doc/co_heaviness.Rmd | 2 pkgndep-2.0.0/pkgndep/inst/doc/co_heaviness.html | 2 pkgndep-2.0.0/pkgndep/inst/doc/pkgndep.R | 14 pkgndep-2.0.0/pkgndep/inst/doc/pkgndep.Rmd | 19 pkgndep-2.0.0/pkgndep/inst/doc/pkgndep.html | 79 +- pkgndep-2.0.0/pkgndep/inst/doc/suggestions.R | 8 pkgndep-2.0.0/pkgndep/inst/doc/suggestions.Rmd | 19 pkgndep-2.0.0/pkgndep/inst/doc/suggestions.html | 113 --- pkgndep-2.0.0/pkgndep/inst/extdata/cola_dep.rds |only pkgndep-2.0.0/pkgndep/inst/extdata/package_report.html | 6 pkgndep-2.0.0/pkgndep/man/co_heaviness.Rd | 23 pkgndep-2.0.0/pkgndep/man/current_bioc_version.Rd |only pkgndep-2.0.0/pkgndep/man/heaviness.Rd | 24 pkgndep-2.0.0/pkgndep/man/load_pkg_db.Rd | 34 - pkgndep-2.0.0/pkgndep/man/pkgndep.Rd |only pkgndep-2.0.0/pkgndep/man/pkgndep_opt.Rd | 33 - pkgndep-2.0.0/pkgndep/man/plot.Rd |only pkgndep-2.0.0/pkgndep/man/print.pkgndep.Rd | 21 pkgndep-2.0.0/pkgndep/man/reformat_db.Rd | 45 - pkgndep-2.0.0/pkgndep/man/report.Rd |only pkgndep-2.0.0/pkgndep/tests/testthat/test_pkgndep.R | 61 - pkgndep-2.0.0/pkgndep/vignettes/co_heaviness.Rmd | 2 pkgndep-2.0.0/pkgndep/vignettes/pkgndep.Rmd | 19 pkgndep-2.0.0/pkgndep/vignettes/suggestions.Rmd | 19 82 files changed, 476 insertions(+), 1548 deletions(-)
Title: Generate Functions to Get or Set Global Options
Description: It provides more configurations on the option values such as validation
and filtering on the values, making options invisible or private.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between GlobalOptions versions 0.1.3 dated 2025-11-28 and 0.1.4 dated 2026-04-08
GlobalOptions-0.1.3/GlobalOptions/man/Assign.GlobalOptionsFun.rd |only GlobalOptions-0.1.3/GlobalOptions/man/Dot.DollarNames.GlobalOptionsFun.rd |only GlobalOptions-0.1.3/GlobalOptions/man/Dot.v.rd |only GlobalOptions-0.1.3/GlobalOptions/man/Extract.GlobalOptionsFun.rd |only GlobalOptions-0.1.3/GlobalOptions/man/ExtractExtract.GlobalOptionsFun.rd |only GlobalOptions-0.1.3/GlobalOptions/man/ExtractExtractAssign.GlobalOptionsFun.rd |only GlobalOptions-0.1.3/GlobalOptions/man/Subset.GlobalOptionsFun.rd |only GlobalOptions-0.1.3/GlobalOptions/man/Subset.InternalOptionValue.rd |only GlobalOptions-0.1.3/GlobalOptions/man/dump_opt.rd |only GlobalOptions-0.1.3/GlobalOptions/man/names.GlobalOptionsFun.Rd |only GlobalOptions-0.1.3/GlobalOptions/man/print.GlobalOptionsFun.rd |only GlobalOptions-0.1.3/GlobalOptions/man/setGlobalOptions.rd |only GlobalOptions-0.1.3/GlobalOptions/man/set_opt.rd |only GlobalOptions-0.1.4/GlobalOptions/DESCRIPTION | 16 GlobalOptions-0.1.4/GlobalOptions/LICENSE | 2 GlobalOptions-0.1.4/GlobalOptions/MD5 | 40 GlobalOptions-0.1.4/GlobalOptions/NAMESPACE | 44 GlobalOptions-0.1.4/GlobalOptions/NEWS | 8 GlobalOptions-0.1.4/GlobalOptions/R/class.R | 55 GlobalOptions-0.1.4/GlobalOptions/R/setGlobalOptions.R | 402 +- GlobalOptions-0.1.4/GlobalOptions/build/vignette.rds |binary GlobalOptions-0.1.4/GlobalOptions/inst/doc/GlobalOptions.R | 6 GlobalOptions-0.1.4/GlobalOptions/inst/doc/GlobalOptions.Rmd | 15 GlobalOptions-0.1.4/GlobalOptions/inst/doc/GlobalOptions.html | 1680 ---------- GlobalOptions-0.1.4/GlobalOptions/man/internal_v.Rd |only GlobalOptions-0.1.4/GlobalOptions/man/opt_helper.Rd |only GlobalOptions-0.1.4/GlobalOptions/man/opt_print.Rd |only GlobalOptions-0.1.4/GlobalOptions/man/opt_utility.Rd |only GlobalOptions-0.1.4/GlobalOptions/man/set_opt.Rd |only GlobalOptions-0.1.4/GlobalOptions/vignettes/GlobalOptions.Rmd | 15 30 files changed, 445 insertions(+), 1838 deletions(-)
Title: Parsing Command-Line Arguments
Description: This is a command-line argument parser which wraps the
powerful Perl module Getopt::Long and with some adaptations for easier use
in R.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between GetoptLong versions 1.1.0 dated 2025-11-28 and 1.1.1 dated 2026-04-08
DESCRIPTION | 16 LICENSE | 2 MD5 | 18 build/vignette.rds |binary inst/doc/GetoptLong.R | 348 +++--- inst/doc/GetoptLong.html | 1775 +++-------------------------------- inst/doc/sub_commands.R | 118 +- inst/doc/sub_commands.html | 1489 ++--------------------------- inst/doc/variable_interpolation.R | 32 inst/doc/variable_interpolation.html | 1561 ++---------------------------- 10 files changed, 700 insertions(+), 4659 deletions(-)
Title: Submitter and Monitor of the 'LSF Cluster'
Description: It submits R code/R scripts/shell commands to 'LSF cluster'
(<https://en.wikipedia.org/wiki/Platform_LSF>, the 'bsub' system) without
leaving R. There is also an interactive 'shiny' application for monitoring job status.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between bsub versions 2.0.6 dated 2025-11-28 and 2.0.7 dated 2026-04-08
DESCRIPTION | 12 +- MD5 | 8 - NEWS | 1 build/vignette.rds |binary inst/doc/bsub.html | 222 +++-------------------------------------------------- 5 files changed, 24 insertions(+), 219 deletions(-)
Title: Construct Mixed Type Data Structures with Vectors of Vectors
Description: Mixed type vectors are useful for combining semantically similar classes. Some examples of semantically related classes include time across different granularities (e.g. daily, monthly, annual) and probability distributions (e.g. Normal, Uniform, Poisson). These groups of vector types typically share common statistical operations which vary in results with the attributes of each vector. The 'vecvec' data structure facilitates efficient storage and computation across multiple vectors within the same object.
Author: Mitchell O'Hara-Wild [aut, cre]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between vecvec versions 0.2.0 dated 2025-09-18 and 0.2.1 dated 2026-04-08
DESCRIPTION | 11 +++++++---- MD5 | 14 ++++++++------ NAMESPACE | 1 + NEWS.md | 6 ++++++ R/missing.R |only R/vecvec.R | 2 +- README.md | 9 ++++----- man/vecvec-package.Rd | 9 +++++++++ tests/testthat/test-missing.R |only 9 files changed, 36 insertions(+), 16 deletions(-)
Title: Automatic Univariate Time Series Modelling of many Kinds
Description: Comprehensive analysis and forecasting
of univariate time series using automatic
time series models of many kinds.
Harvey AC (1989) <doi:10.1017/CBO9781107049994>.
Pedregal DJ and Young PC (2002) <doi:10.1002/9780470996430>.
Durbin J and Koopman SJ (2012) <doi:10.1093/acprof:oso/9780199641178.001.0001>.
Hyndman RJ, Koehler AB, Ord JK, and Snyder RD (2008) <doi:10.1007/978-3-540-71918-2>.
Gómez V, Maravall A (2000) <doi:10.1002/9781118032978>.
Pedregal DJ, Trapero JR and Holgado E (2024) <doi:10.1016/j.ijforecast.2023.09.004>.
Author: Diego J. Pedregal [aut, cre]
Maintainer: Diego J. Pedregal <diego.pedregal@uclm.es>
Diff between UComp versions 5.1.7 dated 2026-02-03 and 5.1.9 dated 2026-04-08
ChangeLog | 2 +- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/DJPTtools.h | 5 ----- src/UCompC.cpp | 4 ++-- 5 files changed, 11 insertions(+), 16 deletions(-)
Title: R SDK and Exporters for OpenTelemetry
Description: OpenTelemetry is a collection of tools,
APIs, and SDKs used to instrument, generate, collect, and export
telemetry data (metrics, logs, and traces) for analysis in order to
understand your software's performance and behavior.
This package contains the OpenTelemetry SDK, and exporters.
Use this package to export traces, metrics, logs from instrumented
R code. Use the otel package to instrument your R code for
OpenTelemetry.
Author: Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd] ,
opentelemetry-cpp authors [ctb]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between otelsdk versions 0.2.3 dated 2026-03-10 and 0.2.4 dated 2026-04-08
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NEWS.md | 4 ++++ README.md | 2 +- configure | 49 ++++++++++++++++++++++++++++++++++++++++--------- src/Makevars.in | 4 ++-- src/cleancall.c | 6 +++++- src/utils.c | 11 ++++++++--- tools |only 9 files changed, 71 insertions(+), 26 deletions(-)
Title: Raw System Credential Store Access from R
Description: Aims to support all features of the system credential store,
including non-portable ones. Supports 'Keychain' on 'macOS', and
'Credential Manager' on 'Windows'. See the 'keyring' package if you
need a portable 'API'.
Author: Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between oskeyring versions 0.1.6 dated 2023-04-11 and 0.1.7 dated 2026-04-08
DESCRIPTION | 20 ++++++----- LICENSE | 4 +- MD5 | 32 +++++++++--------- NEWS.md | 4 ++ R/cleancall.R | 1 R/macos.R | 73 +++++++++++++++++++++++++++++++----------- R/package.R | 1 R/utils.R | 16 ++++----- R/windows.R | 26 +++++++++----- README.md | 25 ++++++++------ man/macos_keychain.Rd | 8 ++-- man/oskeyring-package.Rd | 2 - src/cleancall.c | 6 ++- tests/testthat/helper.R | 5 +- tests/testthat/test-macos.R | 1 tests/testthat/test-utils.R | 1 tests/testthat/test-windows.R | 2 - 17 files changed, 140 insertions(+), 87 deletions(-)
Title: C Resource Cleanup via Exit Handlers
Description: Wrapper of .Call() that runs exit handlers to clean up C
resources. Helps managing C (non-R) resources while using the R API.
Author: Lionel Henry [aut],
Gabor Csardi [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between cleancall versions 0.1.3 dated 2022-10-26 and 0.1.4 dated 2026-04-08
DESCRIPTION | 25 +++++++++++++------------ LICENSE | 4 ++-- MD5 | 14 +++++++------- NEWS.md | 4 ++++ README.md | 10 ++++++++-- man/cleancall-package.Rd | 9 ++++----- src/cleancall.c | 8 +++++--- src/cleancall.h | 11 +++++++++++ 8 files changed, 54 insertions(+), 31 deletions(-)
Title: An API Client for Australian Weather and Climate Data Resources
Description: Provides automated downloading, parsing and formatting of
weather data for Australia through API endpoints provided by the
Department of Primary Industries and Regional Development (DPIRD) of
Western Australia and by the Science and Technology Division of the
Queensland Government's Department of Environment and Science (DES).
As well as the Bureau of Meteorology (BOM) of the Australian
government precis and coastal forecasts,
and downloading and importing radar and satellite imagery files.
DPIRD weather data are accessed through public APIs provided by
DPIRD, <https://www.dpird.wa.gov.au/online-tools/apis/>, providing
access to weather station data from the DPIRD weather station
network. Australia-wide weather data are based on data from the
Australian Bureau of Meteorology (BOM) data and accessed through
SILO (Scientific Information for Land Owners) Jeffrey et al. (2001)
<doi:10.1016/S1364-8152(01)00008-1>. DPIRD data are made available
under a Creative Commons Attribut [...truncated...]
Author: Rodrigo Pires [aut, cre] ,
Anna Hepworth [aut] ,
Rebecca O'Leary [aut],
Jonathan Carroll [aut] ,
James Goldie [aut] ,
Dean Marchiori [aut] ,
Paul Melloy [aut] ,
Mark Padgham [aut] ,
Hugh Parsonage [aut] ,
Keith Pembleton [ctb] ,
Maelle Salmon [ctb] . [...truncated...]
Maintainer: Rodrigo Pires <rodrigo.pires@dpird.wa.gov.au>
Diff between weatherOz versions 2.0.2 dated 2025-09-19 and 3.0.0 dated 2026-04-08
weatherOz-2.0.2/weatherOz/R/get_ag_bulletin.R |only weatherOz-2.0.2/weatherOz/R/parse_ag_bulletin.R |only weatherOz-2.0.2/weatherOz/man/get_ag_bulletin.Rd |only weatherOz-2.0.2/weatherOz/man/parse_ag_bulletin.Rd |only weatherOz-2.0.2/weatherOz/tests/testthat/test-get_ag_bulletin.R |only weatherOz-3.0.0/weatherOz/DESCRIPTION | 15 weatherOz-3.0.0/weatherOz/MD5 | 216 - weatherOz-3.0.0/weatherOz/NAMESPACE | 9 weatherOz-3.0.0/weatherOz/NEWS.md | 110 weatherOz-3.0.0/weatherOz/R/find_forecast_towns.R | 56 weatherOz-3.0.0/weatherOz/R/get_coastal_forecast.R | 2 weatherOz-3.0.0/weatherOz/R/get_dpird_apsim.R | 24 weatherOz-3.0.0/weatherOz/R/get_dpird_summaries.R | 548 ++- weatherOz-3.0.0/weatherOz/R/get_key.R | 141 weatherOz-3.0.0/weatherOz/R/get_metno_daily_forecast.R |only weatherOz-3.0.0/weatherOz/R/get_metno_forecast.R |only weatherOz-3.0.0/weatherOz/R/get_patched_point.R | 36 weatherOz-3.0.0/weatherOz/R/get_precis_forecast.R | 2 weatherOz-3.0.0/weatherOz/R/get_radar_imagery.R | 4 weatherOz-3.0.0/weatherOz/R/get_satellite_imagery.R | 4 weatherOz-3.0.0/weatherOz/R/get_stations_metadata.R | 4 weatherOz-3.0.0/weatherOz/R/globals.R | 26 weatherOz-3.0.0/weatherOz/R/internal_functions.R | 536 ++- weatherOz-3.0.0/weatherOz/R/parse_coastal_forecast.R | 2 weatherOz-3.0.0/weatherOz/R/parse_precis_forecast.R | 2 weatherOz-3.0.0/weatherOz/R/weatherOz_print_functions.R | 8 weatherOz-3.0.0/weatherOz/README.md | 188 - weatherOz-3.0.0/weatherOz/build/vignette.rds |binary weatherOz-3.0.0/weatherOz/inst/WORDLIST | 31 weatherOz-3.0.0/weatherOz/inst/doc/use_case.html | 6 weatherOz-3.0.0/weatherOz/inst/doc/weatherOz.Rmd | 200 - weatherOz-3.0.0/weatherOz/inst/doc/weatherOz.html | 411 +- weatherOz-3.0.0/weatherOz/inst/doc/weatherOz_for_BOM.Rmd | 479 ++- weatherOz-3.0.0/weatherOz/inst/doc/weatherOz_for_BOM.html | 503 ++- weatherOz-3.0.0/weatherOz/inst/doc/weatherOz_for_DPIRD.Rmd | 835 +++++ weatherOz-3.0.0/weatherOz/inst/doc/weatherOz_for_DPIRD.html | 1097 ++++++- weatherOz-3.0.0/weatherOz/inst/doc/weatherOz_for_SILO.Rmd | 1176 +++---- weatherOz-3.0.0/weatherOz/inst/doc/weatherOz_for_SILO.html | 1493 +++++----- weatherOz-3.0.0/weatherOz/inst/doc/weatherOz_for_metno.Rmd |only weatherOz-3.0.0/weatherOz/inst/doc/weatherOz_for_metno.html |only weatherOz-3.0.0/weatherOz/man/find_forecast_towns.Rd | 8 weatherOz-3.0.0/weatherOz/man/find_stations_in.Rd | 2 weatherOz-3.0.0/weatherOz/man/get_available_imagery.Rd | 6 weatherOz-3.0.0/weatherOz/man/get_available_radar.Rd | 6 weatherOz-3.0.0/weatherOz/man/get_coastal_forecast.Rd | 9 weatherOz-3.0.0/weatherOz/man/get_data_drill.Rd | 3 weatherOz-3.0.0/weatherOz/man/get_data_drill_apsim.Rd | 3 weatherOz-3.0.0/weatherOz/man/get_dpird_apsim.Rd | 3 weatherOz-3.0.0/weatherOz/man/get_dpird_extremes.Rd | 3 weatherOz-3.0.0/weatherOz/man/get_dpird_minute.Rd | 3 weatherOz-3.0.0/weatherOz/man/get_dpird_summaries.Rd | 15 weatherOz-3.0.0/weatherOz/man/get_key.Rd | 11 weatherOz-3.0.0/weatherOz/man/get_metno_daily_forecast.Rd |only weatherOz-3.0.0/weatherOz/man/get_metno_forecast.Rd |only weatherOz-3.0.0/weatherOz/man/get_patched_point.Rd | 5 weatherOz-3.0.0/weatherOz/man/get_patched_point_apsim.Rd | 3 weatherOz-3.0.0/weatherOz/man/get_precis_forecast.Rd | 9 weatherOz-3.0.0/weatherOz/man/get_radar_imagery.Rd | 9 weatherOz-3.0.0/weatherOz/man/get_satellite_imagery.Rd | 9 weatherOz-3.0.0/weatherOz/man/get_stations_metadata.Rd | 4 weatherOz-3.0.0/weatherOz/man/metno_get_dominant_symbol.Rd |only weatherOz-3.0.0/weatherOz/man/metno_resample_data_table.Rd |only weatherOz-3.0.0/weatherOz/man/metno_timeseries_to_data_table.Rd |only weatherOz-3.0.0/weatherOz/man/parse_coastal_forecast.Rd | 10 weatherOz-3.0.0/weatherOz/man/parse_precis_forecast.Rd | 10 weatherOz-3.0.0/weatherOz/man/weatherOz-package.Rd | 8 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_all_availability.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_extreme_all_values.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_extreme_erosion_conditions.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_get_apsim.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_minute_values.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_period_availability.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_summaries_15min.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_summaries_30min.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_summaries_daily.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_summaries_hourly.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_summaries_mixed_schema_me003.json |only weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_summaries_monthly.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/dpird_summaries_yearly.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/metadata_all_cassette.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/metadata_dpird_station.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/metadata_dpird_station_rich_TRUE.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/metadata_silo_station.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/metno_cache_reuse_compact.json |only weatherOz-3.0.0/weatherOz/tests/fixtures/metno_cache_revalidate_compact.json |only weatherOz-3.0.0/weatherOz/tests/fixtures/metno_daily_cache_reuse_compact.json |only weatherOz-3.0.0/weatherOz/tests/fixtures/metno_forecast_compact.json |only weatherOz-3.0.0/weatherOz/tests/fixtures/nearby_all_stations_DPIRD_station_code.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/nearby_all_stations_SILO_station_code.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/nearby_all_stations_latlon.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/nearby_dpird_stations_dpird_code.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/nearby_dpird_stations_lonlat_with_no_stations.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/nearby_dpird_stations_lonlat_with_stations.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/silo_get_data_drill_all_daily_values.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/silo_get_data_drill_apsim.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/silo_get_data_drill_selected_daily_values.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/silo_get_patched_point_apsim.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/silo_get_patched_point_daily_values.json | 2 weatherOz-3.0.0/weatherOz/tests/fixtures/silo_get_patched_point_selected_daily_values.json | 2 weatherOz-3.0.0/weatherOz/tests/testthat/test-get_dpird_availability.R | 116 weatherOz-3.0.0/weatherOz/tests/testthat/test-get_dpird_summaries.R | 215 + weatherOz-3.0.0/weatherOz/tests/testthat/test-get_patched_point.R | 30 weatherOz-3.0.0/weatherOz/tests/testthat/test-get_stations_metadata.R | 426 +- weatherOz-3.0.0/weatherOz/tests/testthat/test-metno_api.R |only weatherOz-3.0.0/weatherOz/vignettes/!precompile.R | 10 weatherOz-3.0.0/weatherOz/vignettes/combined_historical_forecast_plot-1.png |only weatherOz-3.0.0/weatherOz/vignettes/daily_forecast_plot-1.png |only weatherOz-3.0.0/weatherOz/vignettes/dpird-station-locations-map-1.png |binary weatherOz-3.0.0/weatherOz/vignettes/heat_stress_plot-1.png |only weatherOz-3.0.0/weatherOz/vignettes/hourly_forecast_plot-1.png |only weatherOz-3.0.0/weatherOz/vignettes/plot_sw_land_div_map-1.png |binary weatherOz-3.0.0/weatherOz/vignettes/silo-station-locations-map-1.png |binary weatherOz-3.0.0/weatherOz/vignettes/use_case.Rmd.orig | 2 weatherOz-3.0.0/weatherOz/vignettes/view_sw_ag_region-1.png |binary weatherOz-3.0.0/weatherOz/vignettes/weatherOz.Rmd | 200 - weatherOz-3.0.0/weatherOz/vignettes/weatherOz.Rmd.orig | 26 weatherOz-3.0.0/weatherOz/vignettes/weatherOz_for_BOM.Rmd | 479 ++- weatherOz-3.0.0/weatherOz/vignettes/weatherOz_for_BOM.Rmd.orig | 12 weatherOz-3.0.0/weatherOz/vignettes/weatherOz_for_DPIRD.Rmd | 835 +++++ weatherOz-3.0.0/weatherOz/vignettes/weatherOz_for_SILO.Rmd | 1176 +++---- weatherOz-3.0.0/weatherOz/vignettes/weatherOz_for_metno.Rmd |only weatherOz-3.0.0/weatherOz/vignettes/weatherOz_for_metno.Rmd.orig |only 122 files changed, 7846 insertions(+), 4040 deletions(-)
Title: Stacked Elastic Net
Description: Implements stacked elastic net regression (Rauschenberger 2021 <doi:10.1093/bioinformatics/btaa535>). The elastic net generalises ridge and lasso regularisation (Zou 2005 <doi:10.1111/j.1467-9868.2005.00503.x>). Instead of fixing or tuning the mixing parameter alpha, we combine multiple alpha by stacked generalisation (Wolpert 1992 <doi:10.1016/S0893-6080(05)80023-1>).
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger@uni.lu>
Diff between starnet versions 1.0.0 dated 2025-06-10 and 1.0.1 dated 2026-04-08
starnet-1.0.0/starnet/man/dot-simulate.Rd |only starnet-1.0.1/starnet/DESCRIPTION | 8 starnet-1.0.1/starnet/MD5 | 20 starnet-1.0.1/starnet/R/functions.R | 43 - starnet-1.0.1/starnet/R/pkgname.R | 6 starnet-1.0.1/starnet/build/partial.rdb |binary starnet-1.0.1/starnet/build/vignette.rds |binary starnet-1.0.1/starnet/inst/doc/script.R | 880 ++++++++++++------------- starnet-1.0.1/starnet/inst/doc/starnet.R | 6 starnet-1.0.1/starnet/inst/doc/starnet.html | 5 starnet-1.0.1/starnet/man/simulate-internal.Rd |only starnet-1.0.1/starnet/man/starnet-package.Rd | 54 + 12 files changed, 543 insertions(+), 479 deletions(-)
Title: Power and Sample Size Calculation for Non-Proportional Hazards
and Beyond
Description: Performs power and sample size calculation for non-proportional hazards model using the Fleming-Harrington family of weighted log-rank tests. The sequentially calculated log-rank test score statistics are assumed to have independent increments as characterized in Anastasios A. Tsiatis (1982) <doi:10.1080/01621459.1982.10477898>. The mean and variance of log-rank test score statistics are calculated based on Kaifeng Lu (2021) <doi:10.1002/pst.2069>. The boundary crossing probabilities are calculated using the recursive integration algorithm described in Christopher Jennison and Bruce W. Turnbull (2000, ISBN:0849303168). The package can also be used for continuous, binary, and count data. For continuous data, it can handle missing data through mixed-model for repeated measures (MMRM). In crossover designs, it can estimate direct treatment effects while accounting for carryover effects. For binary data, it can design Simon's 2-stage, modified toxicity probability-2 (mTPI-2), a [...truncated...]
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between lrstat versions 0.3.0 dated 2026-03-07 and 0.3.1 dated 2026-04-08
DESCRIPTION | 12 MD5 | 269 +++++++++-------- NAMESPACE | 9 NEWS.md | 13 R/RcppExports.R | 266 +++++++++++++++++ R/lrsim.R | 2 R/lrsim_tsssd.R |only R/lrstat-package.R | 2 R/mvnormr.R |only R/parameter_descriptions.R | 50 +-- R/prints.R | 301 ++++++++++++++++--- README.md | 4 build/vignette.rds |binary inst/doc/direct_approximation_vs_schoenfeld.html | 4 inst/doc/fixed_follow-up.html | 10 inst/doc/group_sequential_simulation.html | 12 inst/doc/non-proportional_hazards.html | 8 inst/doc/stratified.html | 6 man/accrual.Rd | 2 man/binary_tte_sim.Rd | 4 man/caltime.Rd | 6 man/corr_pfs_os.Rd | 2 man/covrmst.Rd | 4 man/dtpwexp.Rd | 2 man/exitprob_tsssd.Rd |only man/figures |only man/getAccrualDurationFromN.Rd | 2 man/getBound.Rd | 21 - man/getBound_tsssd.Rd |only man/getDesign.Rd | 40 +- man/getDesignEquiv.Rd | 19 - man/getDesignMeanDiff.Rd | 40 +- man/getDesignMeanDiffEquiv.Rd | 19 - man/getDesignMeanDiffMMRM.Rd | 44 +- man/getDesignMeanDiffXO.Rd | 40 +- man/getDesignMeanDiffXOEquiv.Rd | 19 - man/getDesignMeanRatio.Rd | 40 +- man/getDesignMeanRatioEquiv.Rd | 19 - man/getDesignMeanRatioXO.Rd | 40 +- man/getDesignMeanRatioXOEquiv.Rd | 19 - man/getDesignOddsRatio.Rd | 40 +- man/getDesignOddsRatioEquiv.Rd | 19 - man/getDesignOneMean.Rd | 40 +- man/getDesignOneProportion.Rd | 40 +- man/getDesignOneSlope.Rd | 40 +- man/getDesignPairedMeanDiff.Rd | 40 +- man/getDesignPairedMeanDiffEquiv.Rd | 19 - man/getDesignPairedMeanRatio.Rd | 40 +- man/getDesignPairedMeanRatioEquiv.Rd | 19 - man/getDesignPairedPropMcNemar.Rd | 40 +- man/getDesignRiskDiff.Rd | 40 +- man/getDesignRiskDiffEquiv.Rd | 19 - man/getDesignRiskRatio.Rd | 40 +- man/getDesignRiskRatioEquiv.Rd | 19 - man/getDesignRiskRatioFM.Rd | 40 +- man/getDesignSlopeDiff.Rd | 40 +- man/getDesignSlopeDiffMMRM.Rd | 46 +-- man/getDesignWilcoxon.Rd | 40 +- man/getDesign_tsssd.Rd |only man/getDurationFromNevents.Rd | 6 man/getNeventsFromHazardRatio.Rd | 40 +- man/hazard_pd.Rd | 2 man/hazard_sub.Rd | 2 man/kmpower.Rd | 34 +- man/kmpower1s.Rd | 34 +- man/kmpowerequiv.Rd | 25 - man/kmsamplesize.Rd | 46 +-- man/kmsamplesize1s.Rd | 46 +-- man/kmsamplesizeequiv.Rd | 25 - man/kmstat.Rd | 6 man/kmsurv.Rd | 2 man/lrpower.Rd | 38 +- man/lrpowerequiv.Rd | 29 + man/lrsamplesize.Rd | 50 +-- man/lrsamplesizeequiv.Rd | 29 + man/lrschoenfeld.Rd | 46 +-- man/lrsim.Rd | 9 man/lrsim2e.Rd | 6 man/lrsim2e3a.Rd | 6 man/lrsim3a.Rd | 6 man/lrsim_tsssd.Rd |only man/lrsimsub.Rd | 6 man/lrstat.Rd | 6 man/mtpwexp.Rd | 2 man/natrisk.Rd | 4 man/nbpower.Rd | 34 +- man/nbpower1s.Rd | 34 +- man/nbpowerequiv.Rd | 25 - man/nbsamplesize.Rd | 46 +-- man/nbsamplesize1s.Rd | 46 +-- man/nbsamplesizeequiv.Rd | 25 - man/nbstat.Rd | 6 man/nevent.Rd | 4 man/param_accrualTime.Rd | 2 man/param_efficacyStopping.Rd | 2 man/param_fixedFollowup.Rd | 2 man/param_futilityBounds.Rd | 2 man/param_futilityStopping.Rd | 2 man/param_parameterAlphaSpending.Rd | 3 man/param_parameterBetaSpending.Rd | 3 man/param_piecewiseSurvivalTime.Rd | 2 man/param_typeAlphaSpending.Rd | 16 - man/param_typeBetaSpending.Rd | 12 man/param_typeOfComputation.Rd | 4 man/patrisk.Rd | 2 man/pevent.Rd | 2 man/pmvnormr.Rd |only man/print.lrsim_tsssd.Rd |only man/print.tsssd.Rd |only man/ptpwexp.Rd | 2 man/qmvnormr.Rd |only man/qtpwexp.Rd | 2 man/repeatedPValue.Rd | 19 - man/rmpower.Rd | 34 +- man/rmpower1s.Rd | 34 +- man/rmpowerequiv.Rd | 25 - man/rmsamplesize.Rd | 46 +-- man/rmsamplesize1s.Rd | 46 +-- man/rmsamplesizeequiv.Rd | 25 - man/rmst.Rd | 2 man/rmstat.Rd | 6 man/rtpwexp.Rd | 2 man/simonBayesSim.Rd | 2 src/Makevars |only src/Makevars.win |only src/RcppExports.cpp | 168 +++++++++++ src/dataframe_list.cpp | 159 ++++++++++ src/dataframe_list.h | 323 +++++++++++++++------ src/enrollment_event.h | 32 -- src/generic_design.cpp | 5 src/generic_design.h | 16 - src/logistic_regression.cpp | 3 src/logistic_regression.h | 13 src/lrsim.cpp | 25 + src/lrsim_tsssd.cpp |only src/miettinen_nurminen.h | 8 src/mvnormr.cpp |only src/mvnormr.h |only src/survival_analysis.cpp | 15 src/survival_analysis.h | 19 - src/thread_utils.h | 5 src/tsssd_design.cpp |only src/utilities.cpp | 347 +++++++++++++++++------ src/utilities.h | 239 ++++++++------- 144 files changed, 2955 insertions(+), 1417 deletions(-)
Title: Black-Box Optimization Toolkit
Description: Features highly configurable search spaces via the 'paradox'
package and optimizes every user-defined objective function. The
package includes several optimization algorithms e.g. Random Search,
Iterated Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband
(in 'mlr3hyperband'). bbotk is the base package of 'mlr3tuning',
'mlr3fselect' and 'miesmuschel'.
Author: Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut],
Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between bbotk versions 1.9.0 dated 2026-02-28 and 1.10.0 dated 2026-04-08
bbotk-1.10.0/bbotk/DESCRIPTION | 12 bbotk-1.10.0/bbotk/MD5 | 228 +++++----- bbotk-1.10.0/bbotk/NAMESPACE | 5 bbotk-1.10.0/bbotk/NEWS.md | 7 bbotk-1.10.0/bbotk/R/Archive.R | 10 bbotk-1.10.0/bbotk/R/ArchiveAsync.R | 37 + bbotk-1.10.0/bbotk/R/ArchiveAsyncFrozen.R | 13 bbotk-1.10.0/bbotk/R/ArchiveBatch.R | 45 + bbotk-1.10.0/bbotk/R/CallbackAsync.R | 63 +- bbotk-1.10.0/bbotk/R/CallbackBatch.R | 48 +- bbotk-1.10.0/bbotk/R/Codomain.R | 24 - bbotk-1.10.0/bbotk/R/ContextAsync.R | 11 bbotk-1.10.0/bbotk/R/ContextBatch.R | 11 bbotk-1.10.0/bbotk/R/EvalInstance.R | 16 bbotk-1.10.0/bbotk/R/Objective.R | 45 + bbotk-1.10.0/bbotk/R/ObjectiveRFun.R | 28 - bbotk-1.10.0/bbotk/R/ObjectiveRFunDt.R | 38 + bbotk-1.10.0/bbotk/R/ObjectiveRFunMany.R | 43 + bbotk-1.10.0/bbotk/R/OptimInstance.R | 20 bbotk-1.10.0/bbotk/R/OptimInstanceAsync.R | 14 bbotk-1.10.0/bbotk/R/OptimInstanceAsyncMultiCrit.R | 21 bbotk-1.10.0/bbotk/R/OptimInstanceAsyncSingleCrit.R | 23 - bbotk-1.10.0/bbotk/R/OptimInstanceBatch.R | 40 + bbotk-1.10.0/bbotk/R/OptimInstanceBatchMultiCrit.R | 13 bbotk-1.10.0/bbotk/R/OptimInstanceBatchSingleCrit.R | 21 bbotk-1.10.0/bbotk/R/OptimInstanceMultiCrit.R | 10 bbotk-1.10.0/bbotk/R/OptimInstanceSingleCrit.R | 10 bbotk-1.10.0/bbotk/R/Optimizer.R | 40 + bbotk-1.10.0/bbotk/R/OptimizerAsync.R | 76 ++- bbotk-1.10.0/bbotk/R/OptimizerAsyncDesignPoints.R | 11 bbotk-1.10.0/bbotk/R/OptimizerAsyncGridSearch.R | 16 bbotk-1.10.0/bbotk/R/OptimizerAsyncRandomSearch.R | 10 bbotk-1.10.0/bbotk/R/OptimizerBatch.R | 36 + bbotk-1.10.0/bbotk/R/OptimizerBatchChain.R | 18 bbotk-1.10.0/bbotk/R/OptimizerBatchCmaes.R | 15 bbotk-1.10.0/bbotk/R/OptimizerBatchDesignPoints.R | 8 bbotk-1.10.0/bbotk/R/OptimizerBatchFocusSearch.R | 163 ++++--- bbotk-1.10.0/bbotk/R/OptimizerBatchGenSA.R | 21 bbotk-1.10.0/bbotk/R/OptimizerBatchGridSearch.R | 11 bbotk-1.10.0/bbotk/R/OptimizerBatchIrace.R | 35 + bbotk-1.10.0/bbotk/R/OptimizerBatchLocalSearch.R | 4 bbotk-1.10.0/bbotk/R/OptimizerBatchNLoptr.R | 40 + bbotk-1.10.0/bbotk/R/OptimizerBatchRandomSearch.R | 7 bbotk-1.10.0/bbotk/R/Progressor.R | 12 bbotk-1.10.0/bbotk/R/Terminator.R | 30 - bbotk-1.10.0/bbotk/R/TerminatorClockTime.R | 6 bbotk-1.10.0/bbotk/R/TerminatorCombo.R | 16 bbotk-1.10.0/bbotk/R/TerminatorEvals.R | 7 bbotk-1.10.0/bbotk/R/TerminatorNone.R | 11 bbotk-1.10.0/bbotk/R/TerminatorPerfReached.R | 7 bbotk-1.10.0/bbotk/R/TerminatorRunTime.R | 13 bbotk-1.10.0/bbotk/R/TerminatorStagnation.R | 8 bbotk-1.10.0/bbotk/R/TerminatorStagnationBatch.R | 24 - bbotk-1.10.0/bbotk/R/TerminatorStagnationHypervolume.R | 10 bbotk-1.10.0/bbotk/R/as_terminator.R | 15 bbotk-1.10.0/bbotk/R/assertions.R | 65 ++ bbotk-1.10.0/bbotk/R/bb_optimize.R | 32 + bbotk-1.10.0/bbotk/R/bbotk_reflections.R | 13 bbotk-1.10.0/bbotk/R/bibentries.R | 3 bbotk-1.10.0/bbotk/R/conditions.R | 8 bbotk-1.10.0/bbotk/R/helper.R | 8 bbotk-1.10.0/bbotk/R/local_search.R | 21 bbotk-1.10.0/bbotk/R/mlr_callbacks.R | 12 bbotk-1.10.0/bbotk/R/mlr_optimizers.R | 63 +- bbotk-1.10.0/bbotk/R/mlr_terminators.R | 25 - bbotk-1.10.0/bbotk/R/mlr_test_functions.R |only bbotk-1.10.0/bbotk/R/nds_selection.R | 7 bbotk-1.10.0/bbotk/R/sugar.R | 46 +- bbotk-1.10.0/bbotk/R/worker_loops.R | 16 bbotk-1.10.0/bbotk/build/partial.rdb |binary bbotk-1.10.0/bbotk/man/ArchiveAsync.Rd | 2 bbotk-1.10.0/bbotk/man/ArchiveAsyncFrozen.Rd | 2 bbotk-1.10.0/bbotk/man/ObjectiveTestFunction.Rd |only bbotk-1.10.0/bbotk/man/OptimInstanceAsyncMultiCrit.Rd | 2 bbotk-1.10.0/bbotk/man/OptimInstanceAsyncSingleCrit.Rd | 2 bbotk-1.10.0/bbotk/man/OptimizerAsync.Rd | 8 bbotk-1.10.0/bbotk/man/mlr_optimizers_async_design_points.Rd | 2 bbotk-1.10.0/bbotk/man/mlr_optimizers_async_grid_search.Rd | 2 bbotk-1.10.0/bbotk/man/mlr_optimizers_async_random_search.Rd | 2 bbotk-1.10.0/bbotk/man/mlr_test_functions.Rd |only bbotk-1.10.0/bbotk/man/oi_async.Rd | 2 bbotk-1.10.0/bbotk/man/otfun.Rd |only bbotk-1.10.0/bbotk/src/rc_helpers.c | 7 bbotk-1.10.0/bbotk/tests/testthat/helper.R | 32 - bbotk-1.10.0/bbotk/tests/testthat/setup.R | 12 bbotk-1.10.0/bbotk/tests/testthat/teardown.R | 4 bbotk-1.10.0/bbotk/tests/testthat/test_ArchiveAsync.R | 7 bbotk-1.10.0/bbotk/tests/testthat/test_ArchiveBatch.R | 92 ++-- bbotk-1.10.0/bbotk/tests/testthat/test_CallbackAsync.R | 106 ++-- bbotk-1.10.0/bbotk/tests/testthat/test_CallbackBatch.R | 99 +--- bbotk-1.10.0/bbotk/tests/testthat/test_Objective.R | 147 ++++-- bbotk-1.10.0/bbotk/tests/testthat/test_OptimInstanceAsyncSingleCrit.R | 2 bbotk-1.10.0/bbotk/tests/testthat/test_OptimInstanceBatchMultiCrit.R | 1 bbotk-1.10.0/bbotk/tests/testthat/test_OptimInstanceBatchSingleCrit.R | 22 bbotk-1.10.0/bbotk/tests/testthat/test_Optimizer.R | 12 bbotk-1.10.0/bbotk/tests/testthat/test_OptimizerAsynDesignPoints.R | 1 bbotk-1.10.0/bbotk/tests/testthat/test_OptimizerAsync.R | 12 bbotk-1.10.0/bbotk/tests/testthat/test_OptimizerBatchChain.R | 32 - bbotk-1.10.0/bbotk/tests/testthat/test_OptimizerBatchCmaes.R | 6 bbotk-1.10.0/bbotk/tests/testthat/test_OptimizerBatchDesignPoints.R | 10 bbotk-1.10.0/bbotk/tests/testthat/test_OptimizerBatchFocusSearch.R | 105 ++-- bbotk-1.10.0/bbotk/tests/testthat/test_OptimizerBatchGenSA.R | 6 bbotk-1.10.0/bbotk/tests/testthat/test_OptimizerBatchIrace.R | 126 +++-- bbotk-1.10.0/bbotk/tests/testthat/test_OptimizerBatchLocalSearch.R | 60 +- bbotk-1.10.0/bbotk/tests/testthat/test_OptimizerBatchNLoptr.R | 30 + bbotk-1.10.0/bbotk/tests/testthat/test_TerminatorClockTime.R | 6 bbotk-1.10.0/bbotk/tests/testthat/test_TerminatorEvals.R | 2 bbotk-1.10.0/bbotk/tests/testthat/test_TerminatorRunTime.R | 2 bbotk-1.10.0/bbotk/tests/testthat/test_TerminatorStagnationHypervolume.R | 1 bbotk-1.10.0/bbotk/tests/testthat/test_bb_optimize.R | 9 bbotk-1.10.0/bbotk/tests/testthat/test_c_functions.R | 24 - bbotk-1.10.0/bbotk/tests/testthat/test_deprecated.R | 32 - bbotk-1.10.0/bbotk/tests/testthat/test_local_search.R | 17 bbotk-1.10.0/bbotk/tests/testthat/test_mlr_callbacks.R | 8 bbotk-1.10.0/bbotk/tests/testthat/test_mlr_test_functions.R |only bbotk-1.10.0/bbotk/tests/testthat/test_nds_selection.R | 47 +- bbotk-1.10.0/bbotk/tests/testthat/test_search_start.R | 12 bbotk-1.9.0/bbotk/tests/testthat/helper_rush.R |only 118 files changed, 1824 insertions(+), 1136 deletions(-)
Title: An 'Armadillo' Interface
Description: Provides function declarations and inline function definitions that
facilitate communication between R and the 'Armadillo' 'C++' library for
linear algebra and scientific computing. This implementation is derived
from Vargas Sepulveda and Schneider Malamud (2024)
<doi:10.1016/j.softx.2025.102087>.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Jonathan Schneider Malamud [ctb],
Conrad Sanderson [aut] )
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between armadillo4r versions 0.7.0 dated 2025-12-04 and 0.8.0 dated 2026-04-08
armadillo4r-0.7.0/armadillo4r/inst/extdata/src/02_your_functions.h |only armadillo4r-0.8.0/armadillo4r/DESCRIPTION | 6 armadillo4r-0.8.0/armadillo4r/MD5 | 31 - armadillo4r-0.8.0/armadillo4r/NEWS.md | 9 armadillo4r-0.8.0/armadillo4r/README.md | 2 armadillo4r-0.8.0/armadillo4r/build/partial.rdb |binary armadillo4r-0.8.0/armadillo4r/configure | 155 +++--- armadillo4r-0.8.0/armadillo4r/inst/extdata/configure | 254 ++++++++-- armadillo4r-0.8.0/armadillo4r/inst/extdata/configure.win |only armadillo4r-0.8.0/armadillo4r/inst/extdata/dev/01_load_or_install.R | 2 armadillo4r-0.8.0/armadillo4r/inst/extdata/src/02_ols_qr.h |only armadillo4r-0.8.0/armadillo4r/inst/extdata/src/Makevars.win | 3 armadillo4r-0.8.0/armadillo4r/inst/extdata/src/main.cpp | 4 armadillo4r-0.8.0/armadillo4r/inst/include/armadillo4r.hpp | 42 + armadillo4r-0.8.0/armadillo4r/inst/include/armadillo4r/wrappers/cubes.hpp |only armadillo4r-0.8.0/armadillo4r/inst/include/armadillo4r/wrappers/fields.hpp |only armadillo4r-0.8.0/armadillo4r/inst/include/armadillo4r/wrappers/matrices.hpp | 16 armadillo4r-0.8.0/armadillo4r/inst/include/armadillo4r/wrappers/sparse_matrices.hpp | 199 ++++--- armadillo4r-0.8.0/armadillo4r/inst/include/armadillo4r/wrappers/vectors.hpp | 7 19 files changed, 536 insertions(+), 194 deletions(-)
Title: Multiple Imputation by Super Learning
Description: Performs multiple imputation of missing data using an ensemble
super learner built with the tidymodels framework. For each incomplete
column, a stacked ensemble of candidate learners is trained on a bootstrap
sample of the observed data and used to generate imputations via predictive
mean matching (continuous), probability draws (binary), or cumulative
probability draws (categorical). Supports parallelism across imputed
datasets via the future framework.
Author: Justin Manjourides [aut, cre] ,
Thomas Carpenito [aut]
Maintainer: Justin Manjourides <j.manjourides@northeastern.edu>
Diff between misl versions 1.0.0 dated 2026-03-30 and 2.0.0 dated 2026-04-08
DESCRIPTION | 25 + MD5 | 26 + NAMESPACE | 1 NEWS.md | 53 +++ R/misl.R | 533 +++++++++++++++++++++++++++++--------- inst/doc/misl-introduction.R | 215 ++++++++++----- inst/doc/misl-introduction.Rmd | 235 ++++++++++++---- inst/doc/misl-introduction.html | 560 ++++++++++++++++++++++++---------------- man/check_datatype.Rd | 3 man/list_learners.Rd | 9 man/misl.Rd | 65 +++- man/plot_misl_trace.Rd |only man/predict.misl_polr_fit.Rd |only tests/testthat/test-misl.R | 275 +++++++++++++++++++ vignettes/misl-introduction.Rmd | 235 ++++++++++++---- 15 files changed, 1660 insertions(+), 575 deletions(-)