Title: Deep Python Extensions for 'daltoolbox'
Description: Extends 'daltoolbox' with Python-backed components for deep learning,
scikit-learn classification, and time-series forecasting through
'reticulate'. The package provides objects that follow the 'daltoolbox'
architecture while delegating model creation, fitting, encoding, and
prediction to Python libraries such as 'torch' and 'scikit-learn'. In the
package name, 'dp' stands for 'Deep Python'. The overall workflow is
inspired by the Experiment Lines approach described in Ogasawara et al.
(2009) <doi:10.1007/978-3-642-02279-1_20>.
Author: Eduardo Ogasawara [aut, ths, cre] ,
Diego Salles [aut],
Janio Lima [aut],
Lucas Tavares [aut],
Eduardo Bezerra [ctb],
CEFET/RJ [cph]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between daltoolboxdp versions 1.2.747 dated 2026-03-10 and 1.2.767 dated 2026-05-05
DESCRIPTION | 10 MD5 | 99 +++--- NAMESPACE | 7 R/autoenc_adv_e.R | 48 ++- R/autoenc_adv_ed.R | 48 ++- R/autoenc_conv_e.R | 49 ++- R/autoenc_conv_ed.R | 49 ++- R/autoenc_denoise_e.R | 48 ++- R/autoenc_denoise_ed.R | 48 ++- R/autoenc_e.R | 39 ++ R/autoenc_ed.R | 39 ++ R/autoenc_lstm_e.R | 47 ++- R/autoenc_lstm_ed.R | 39 ++ R/autoenc_stacked_e.R | 48 ++- R/autoenc_stacked_ed.R | 50 ++- R/autoenc_variational_e.R | 48 ++- R/autoenc_variational_ed.R | 48 ++- R/globals.R | 2 R/torch_cla_mlp.R |only R/torch_reg_mlp.R |only R/ts_conv1d.R | 119 +++++-- R/ts_lstm.R | 110 +++++-- README.md | 5 inst/python/autoenc.py | 369 ++++++++++------------- inst/python/autoenc_adv.py | 570 +++++++++++++++---------------------- inst/python/autoenc_common.py |only inst/python/autoenc_conv.py | 323 +++++++++----------- inst/python/autoenc_denoise.py | 350 +++++++++------------- inst/python/autoenc_lstm.py | 367 ++++++++++------------- inst/python/autoenc_stacked.py | 394 +++++++++++-------------- inst/python/autoenc_variational.py | 366 ++++++++++------------- inst/python/skcla_knn.py | 2 inst/python/torch_cla_mlp.py |only inst/python/torch_reg_mlp.py |only inst/python/ts_conv1d.py | 456 ++++++++++++++++++----------- inst/python/ts_lstm.py | 430 ++++++++++++++++++--------- man/autoenc_adv_e.Rd | 46 ++ man/autoenc_adv_ed.Rd | 46 ++ man/autoenc_conv_e.Rd | 48 ++- man/autoenc_conv_ed.Rd | 48 ++- man/autoenc_denoise_e.Rd | 46 ++ man/autoenc_denoise_ed.Rd | 46 ++ man/autoenc_e.Rd | 38 ++ man/autoenc_ed.Rd | 38 ++ man/autoenc_lstm_e.Rd | 46 ++ man/autoenc_lstm_ed.Rd | 38 ++ man/autoenc_stacked_e.Rd | 46 ++ man/autoenc_stacked_ed.Rd | 48 ++- man/autoenc_variational_e.Rd | 46 ++ man/autoenc_variational_ed.Rd | 46 ++ man/torch_cla_mlp.Rd |only man/torch_reg_mlp.Rd |only man/ts_conv1d.Rd | 61 ++- man/ts_lstm.Rd | 61 ++- 54 files changed, 3171 insertions(+), 2204 deletions(-)
Title: Price Index Aggregation
Description: Most price indexes are made with a two-step procedure, where
period-over-period elementary indexes are first calculated for a collection
of elementary aggregates at each point in time, and then aggregated according
to a price index aggregation structure. These indexes can then be chained
together to form a time series that gives the evolution of prices with
respect to a fixed base period. This package contains a collection of
functions that revolve around this work flow, making it easy to build
standard price indexes, and implement the methods described by
Balk (2008, <doi:10.1017/CBO9780511720758>), von der Lippe (2007,
<doi:10.3726/978-3-653-01120-3>), and the CPI manual (2020,
<doi:10.5089/9781484354841.069>) for bilateral price indexes.
Author: Steve Martin [aut, cre, cph]
Maintainer: Steve Martin <marberts@protonmail.com>
Diff between piar versions 0.8.3 dated 2025-09-17 and 0.9.0 dated 2026-05-05
DESCRIPTION | 8 MD5 | 158 ++++++------- NAMESPACE | 15 - NEWS.md | 54 ++++ R/aggregate.piar_index.R | 70 ++--- R/aggregation_structure-class.R | 7 R/as_index.R | 46 +-- R/chain.R | 72 +++-- R/coerce-index.R | 13 - R/combine_classifications.R |only R/contrib.R | 130 +++++----- R/elementary_index.R | 66 ++--- R/expand_classification.R | 7 R/extract.piar_index.R | 187 ++++++++------- R/head.piar_index.R | 39 --- R/helpers.R | 65 +++-- R/impute_prices.R | 314 ++++++++++++++++---------- R/index-class.R | 76 +++--- R/is.na.piar_index.R | 2 R/levels.piar_index.R | 2 R/mean.piar_index.R | 57 ++-- R/merge.piar_index.R | 24 + R/price_relative.R | 9 R/split.piar_index.R | 22 - R/split_classification.R | 7 R/stack.piar_index.R | 31 +- R/time.piar_index.R | 4 R/update.aggregation_structure.R | 12 R/window.piar_index.R | 13 - README.md | 16 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 inst/doc/imputation.R | 7 inst/doc/imputation.Rmd | 7 inst/doc/imputation.html | 23 + inst/doc/multiple-baskets.R | 4 inst/doc/multiple-baskets.Rmd | 4 inst/doc/multiple-baskets.html | 4 inst/doc/multiple-data-sources.R | 2 inst/doc/multiple-data-sources.Rmd | 2 inst/doc/multiple-data-sources.html | 2 inst/doc/piar.html | 28 +- inst/doc/subperiods.R | 4 inst/doc/subperiods.Rmd | 4 inst/doc/subperiods.html | 4 man/aggregate.piar_index.Rd | 17 - man/chain.Rd | 15 - man/combine_classifications.Rd |only man/contrib.Rd | 22 - man/elementary_index.Rd | 15 - man/expand_classification.Rd | 5 man/figures/logo-highres.png |only man/figures/logo.png |binary man/impute_prices.Rd | 133 ++++++----- man/mean.piar_index.Rd | 17 - man/piar_index.Rd | 11 man/price_relative.Rd | 9 man/split.piar_index.Rd | 10 man/split_classification.Rd | 7 man/sub-.piar_index.Rd | 14 - man/update.piar_aggregation_structure.Rd | 6 man/window.piar_index.Rd | 2 tests/Examples/piar-Ex.Rout.save | 98 ++++++-- tests/test-making-price-indexes.R | 52 ++-- tests/test-making-price-indexes.Rout.save | 56 ++-- tests/testthat/test-aggregate.R | 25 -- tests/testthat/test-as_index.R | 3 tests/testthat/test-chain.R | 25 +- tests/testthat/test-combine_classifications.R |only tests/testthat/test-elemental_index.R | 12 tests/testthat/test-extract-index.R | 37 ++- tests/testthat/test-impute-prices.R | 95 ++++++- tests/testthat/test-known-values.R | 8 tests/testthat/test-mean.R | 2 tests/testthat/test-merge.R | 1 tests/testthat/test-split.R | 8 tests/testthat/test-stack.R | 8 vignettes/imputation.Rmd | 7 vignettes/multiple-baskets.Rmd | 4 vignettes/multiple-data-sources.Rmd | 2 vignettes/subperiods.Rmd | 4 82 files changed, 1412 insertions(+), 941 deletions(-)
Title: An API Client for the Environmental Data Initiative Repository
Description: A client for the Environmental Data Initiative repository REST API. The 'EDI' data repository <https://portal.edirepository.org/nis/home.jsp> is for publication and reuse of ecological data with emphasis on metadata accuracy and completeness. It is built upon the 'PASTA+' software stack <https://pastaplus-core.readthedocs.io/en/latest/index.html#> and was developed in collaboration with the US 'LTER' Network <https://lternet.edu/>. 'EDIutils' includes functions to search and access existing data, evaluate and upload new data, and assist other data management tasks common to repository users.
Author: Colin Smith [aut, cre] ,
Corinna Gries [ctb] ,
Jasmine Lai [rev] ,
Rodrigo Pires [rev]
Maintainer: Colin Smith <colin.smith@wisc.edu>
Diff between EDIutils versions 2.0.0 dated 2026-01-09 and 2.1.0 dated 2026-05-05
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 10 +++++++++- R/login.R | 9 ++++----- R/logout.R | 6 +++--- R/utilities.R | 6 +++--- build/vignette.rds |binary tests/testthat/setup-EDIutils.R | 1 - tests/testthat/test_utilities.R | 3 --- 9 files changed, 31 insertions(+), 28 deletions(-)
Title: Taxonomic Distance and Phylogenetic Lineage Computation
Description: Computes phylogenetic distances between any two taxa using
hierarchical lineage data retrieved from The Taxonomicon
<http://taxonomicon.taxonomy.nl>, a comprehensive curated classification
of all life based on Systema Naturae 2000 (Brands, 1989
<http://taxonomicon.taxonomy.nl>). Given any two taxon names, retrieves their
full lineages, identifies the most recent common ancestor (MRCA),
and computes a dissimilarity index based on lineage depth. Outputs
native dist objects, enabling direct integration with the R statistical
ecosystem for hierarchical clustering, principal coordinate analysis (PCoA),
and multivariate ecological analyses. Supports individual distance queries,
pairwise distance matrices, clade filtering, and lineage utilities.
Author: Rodrigo Fonseca Villa [aut, cre]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>
Diff between taxodist versions 0.2.0 dated 2026-04-21 and 0.3.0 dated 2026-05-05
DESCRIPTION | 6 MD5 | 24 +-- NAMESPACE | 1 NEWS.md | 33 ++++ R/distance.R | 24 ++- R/fetch.R | 235 +++++++++++++++++++++++++-------- R/utils.R | 15 +- man/plot.taxodist_cluster.Rd | 2 man/plot.taxodist_ord.Rd | 2 man/taxo_cluster.Rd | 4 man/taxo_ordinate.Rd | 8 - man/taxo_search.Rd |only tests/testthat/Rplots.pdf |only tests/testthat/test-distance.R | 291 ++++++++++++++++++++++++++++++++++++++--- 14 files changed, 542 insertions(+), 103 deletions(-)
Title: Test, Document, Containerise, and Deploy R Packages
Description: Reproducibility is essential to the progress of research,
yet achieving it remains elusive even in computational fields.
Continuous Integration (CI) platforms offer a powerful way to launch automated workflows
to check and document code, but often require considerable time, effort,
and technical expertise to setup. We therefore developed the rworkflows suite
to make robust CI workflows easy and freely accessible to all R package developers.
rworkflows consists of 1) a CRAN/Bioconductor-compatible R package template,
2) an R package to quickly implement a standardised workflow, and
3) a centrally maintained GitHub Action.
Author: Brian Schilder [aut] ,
Alan Murphy [aut, ctb] ,
Hiranyamaya Dash [ctb, cre] ,
Nathan Skene [aut]
Maintainer: Hiranyamaya (Hiru) Dash <hdash.work@gmail.com>
Diff between rworkflows versions 1.0.11 dated 2026-03-26 and 1.0.12 dated 2026-05-05
rworkflows-1.0.11/rworkflows/inst/rworkflows_1.0.8.pdf |only rworkflows-1.0.12/rworkflows/DESCRIPTION | 8 rworkflows-1.0.12/rworkflows/MD5 | 123 ++++------ rworkflows-1.0.12/rworkflows/NEWS.md | 80 ++++++ rworkflows-1.0.12/rworkflows/R/bioc_r_versions.R | 8 rworkflows-1.0.12/rworkflows/R/construct_runners.R | 8 rworkflows-1.0.12/rworkflows/R/fill_description.R | 40 +-- rworkflows-1.0.12/rworkflows/R/fill_yaml.R | 8 rworkflows-1.0.12/rworkflows/R/get_description.R | 8 rworkflows-1.0.12/rworkflows/R/get_hex.R | 8 rworkflows-1.0.12/rworkflows/R/infer_deps.R | 18 - rworkflows-1.0.12/rworkflows/R/use_badges.R | 6 rworkflows-1.0.12/rworkflows/R/use_vignette_docker.R | 9 rworkflows-1.0.12/rworkflows/R/use_vignette_getstarted.R | 8 rworkflows-1.0.12/rworkflows/R/use_workflow.R | 23 + rworkflows-1.0.12/rworkflows/README.md | 30 +- rworkflows-1.0.12/rworkflows/inst/doc/bioconductor.R | 28 +- rworkflows-1.0.12/rworkflows/inst/doc/bioconductor.Rmd | 30 +- rworkflows-1.0.12/rworkflows/inst/doc/bioconductor.html | 64 ++--- rworkflows-1.0.12/rworkflows/inst/doc/depgraph.Rmd | 2 rworkflows-1.0.12/rworkflows/inst/doc/depgraph.html | 39 +-- rworkflows-1.0.12/rworkflows/inst/doc/docker.R | 2 rworkflows-1.0.12/rworkflows/inst/doc/docker.Rmd | 4 rworkflows-1.0.12/rworkflows/inst/doc/docker.html | 39 +-- rworkflows-1.0.12/rworkflows/inst/doc/repos.Rmd | 2 rworkflows-1.0.12/rworkflows/inst/doc/repos.html | 39 +-- rworkflows-1.0.12/rworkflows/inst/doc/rworkflows.R | 39 +-- rworkflows-1.0.12/rworkflows/inst/doc/rworkflows.Rmd | 43 ++- rworkflows-1.0.12/rworkflows/inst/doc/rworkflows.html | 90 +++---- rworkflows-1.0.12/rworkflows/inst/templates/docker.Rmd | 4 rworkflows-1.0.12/rworkflows/inst/templates/rworkflows_template.yml | 2 rworkflows-1.0.12/rworkflows/inst/templates/templateR.Rmd | 4 rworkflows-1.0.12/rworkflows/man/bioc_r_versions.Rd | 6 rworkflows-1.0.12/rworkflows/man/construct_runners.Rd | 6 rworkflows-1.0.12/rworkflows/man/fill_description.Rd | 38 +-- rworkflows-1.0.12/rworkflows/man/get_description.Rd | 6 rworkflows-1.0.12/rworkflows/man/get_hex.Rd | 8 rworkflows-1.0.12/rworkflows/man/infer_deps.Rd | 14 - rworkflows-1.0.12/rworkflows/man/use_badges.Rd | 6 rworkflows-1.0.12/rworkflows/man/use_workflow.Rd | 15 + rworkflows-1.0.12/rworkflows/tests/testthat/test-bioc_r_versions.R | 3 rworkflows-1.0.12/rworkflows/tests/testthat/test-check_bioc_version.R | 3 rworkflows-1.0.12/rworkflows/tests/testthat/test-check_cont.R | 6 rworkflows-1.0.12/rworkflows/tests/testthat/test-check_r_version.R | 3 rworkflows-1.0.12/rworkflows/tests/testthat/test-construct_conda_yml.R | 5 rworkflows-1.0.12/rworkflows/tests/testthat/test-construct_cont.R | 23 - rworkflows-1.0.12/rworkflows/tests/testthat/test-construct_runners.R | 3 rworkflows-1.0.12/rworkflows/tests/testthat/test-fill_description.R | 3 rworkflows-1.0.12/rworkflows/tests/testthat/test-get_authors.R | 3 rworkflows-1.0.12/rworkflows/tests/testthat/test-get_description.R | 71 ++--- rworkflows-1.0.12/rworkflows/tests/testthat/test-get_hex.R | 19 - rworkflows-1.0.12/rworkflows/tests/testthat/test-get_yaml.R | 2 rworkflows-1.0.12/rworkflows/tests/testthat/test-gha_python_versions.R | 3 rworkflows-1.0.12/rworkflows/tests/testthat/test-infer_biocviews.R | 37 +-- rworkflows-1.0.12/rworkflows/tests/testthat/test-infer_deps.R | 4 rworkflows-1.0.12/rworkflows/tests/testthat/test-url_exists.R | 3 rworkflows-1.0.12/rworkflows/tests/testthat/test-use_badges.R | 2 rworkflows-1.0.12/rworkflows/tests/testthat/test-use_workflow.R | 2 rworkflows-1.0.12/rworkflows/vignettes/bioconductor.Rmd | 30 +- rworkflows-1.0.12/rworkflows/vignettes/depgraph.Rmd | 2 rworkflows-1.0.12/rworkflows/vignettes/docker.Rmd | 4 rworkflows-1.0.12/rworkflows/vignettes/repos.Rmd | 2 rworkflows-1.0.12/rworkflows/vignettes/rworkflows.Rmd | 43 ++- 63 files changed, 698 insertions(+), 493 deletions(-)
Title: R Client for the BIODATACR Biodiversity Data Platform of Costa
Rica
Description: Provides functions to query occurrence records, species
information, and datasets from BIODATACR
<https://biodiversidad.go.cr>, the national biodiversity information
platform of Costa Rica managed by the Technical Office of CONAGEBIO, Costa Rica.
Built on the Atlas of Living Australia (ALA) API infrastructure.
Author: Manuel Spinola [aut, cre]
Maintainer: Manuel Spinola <mspinola10@gmail.com>
Diff between rbiodatacr versions 0.1.0 dated 2026-04-29 and 0.1.1 dated 2026-05-05
DESCRIPTION | 6 - MD5 | 34 ++++---- NEWS.md | 7 + R/bdcr_count.R | 7 + R/bdcr_occurrences.R | 18 +++- R/bdcr_occurrences_batch.R | 11 ++ R/bdcr_species_search.R | 12 ++- R/utils.R | 57 ++++++++------ build/vignette.rds |binary inst/doc/introduccion.R | 163 +++++++++++++++++++++--------------------- inst/doc/introduccion.Rmd | 5 - inst/doc/introduccion.html | 60 ++------------- man/bdcr_count.Rd | 3 man/bdcr_occurrences.Rd | 3 man/bdcr_occurrences_batch.Rd | 3 man/bdcr_species_search.Rd | 3 tests/testthat/test-utils.R | 9 ++ vignettes/introduccion.Rmd | 5 - 18 files changed, 208 insertions(+), 198 deletions(-)
More information about vegetablesSriLanka at CRAN
Permanent link
Title: Power Analyses using Monte Carlo Simulations
Description: Provides a general purpose simulation-based power analysis
API for routine and customized simulation experimental designs.
The package focuses exclusively on Monte Carlo simulation experiment variants of
(expected) prospective power analyses,
criterion analyses, compromise analyses, sensitivity analyses, and
a priori/post-hoc analyses. The default simulation experiment functions defined within the package
provide stochastic variants of the power analysis subroutines in
G*Power 3.1 (Faul, Erdfelder, Buchner, and Lang, 2009) <doi:10.3758/brm.41.4.1149>,
along with various other parametric and non-parametric power analysis
applications (e.g., mediation analyses) and support for Bayesian power analysis
by way of Bayes factors or posterior probability evaluations.
Additional functions for building
empirical power curves, reanalyzing simulation information, and
for increasing the precision of the resulting power
estimates are also included, each of which utilize similar API structures. [...truncated...]
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between Spower versions 0.6 dated 2026-02-13 and 0.6.2 dated 2026-05-05
Spower-0.6.2/Spower/DESCRIPTION | 10 Spower-0.6.2/Spower/MD5 | 47 Spower-0.6.2/Spower/NAMESPACE | 3 Spower-0.6.2/Spower/R/Spower.R | 72 - Spower-0.6.2/Spower/R/SpowerBatch.R | 17 Spower-0.6.2/Spower/R/SpowerCurve.R | 14 Spower-0.6.2/Spower/R/p_mediation.R | 36 Spower-0.6.2/Spower/R/p_r.R | 7 Spower-0.6.2/Spower/README.md | 13 Spower-0.6.2/Spower/build/vignette.rds |binary Spower-0.6.2/Spower/inst/doc/SpowerIntro.html | 326 ++--- Spower-0.6.2/Spower/inst/doc/SpowerIntro_logicals.html | 358 +++--- Spower-0.6.2/Spower/inst/doc/Spower_TypeSM.html | 186 +-- Spower-0.6.2/Spower/inst/doc/gpower_examples.R |only Spower-0.6.2/Spower/inst/doc/gpower_examples.Rmd | 917 +++------------ Spower-0.6.2/Spower/inst/doc/gpower_examples.html | 1002 ++++++++--------- Spower-0.6.2/Spower/inst/gpower.rds |only Spower-0.6.2/Spower/inst/intro.rds |binary Spower-0.6.2/Spower/inst/intro2.rds |binary Spower-0.6.2/Spower/inst/intro3.rds |binary Spower-0.6.2/Spower/man/Spower.Rd | 8 Spower-0.6.2/Spower/man/p_mediation.Rd | 21 Spower-0.6.2/Spower/man/p_r.Rd | 5 Spower-0.6.2/Spower/vignettes/gpower_examples.Rmd | 917 +++------------ Spower-0.6.2/Spower/vignettes/precompile.R | 4 Spower-0.6/Spower/vignettes/precompileGpower.R |only 26 files changed, 1585 insertions(+), 2378 deletions(-)
Title: Shiny Apps for Lateral Flow Assays
Description: Shiny apps for the quantitative analysis of images from lateral flow assays (LFAs). The images are segmented and background corrected and color intensities are extracted. The apps can be used to import and export intensity data and to calibrate LFAs by means of linear, loess, or gam models. The calibration models can further be saved and applied to intensity data from new images for determining concentrations.
Author: Filip Paskali [aut, cre] ,
Weronika Schary [aut] ,
Matthias Kohl [aut]
Maintainer: Filip Paskali <Filip.Paskali@gmail.com>
Diff between LFApp versions 1.4.1 dated 2024-05-27 and 1.4.2 dated 2026-05-05
DESCRIPTION | 17 MD5 | 74 NAMESPACE | 50 NEWS | 96 - R/analysis_mobile_server.R | 2198 ++++++++++++------------ R/analysis_mobile_ui.R | 834 ++++----- R/analysis_server.R | 2425 ++++++++++++++------------- R/analysis_ui.R | 699 +++---- R/cal_mobile_server.R | 2078 +++++++++++------------ R/cal_mobile_ui.R | 760 ++++---- R/cal_server.R | 2299 +++++++++++++------------ R/cal_ui.R | 633 +++---- R/core_mobile_server.R | 1269 +++++++------- R/core_mobile_ui.R | 366 ++-- R/core_server.R | 1455 ++++++++-------- R/core_ui.R | 336 +-- R/quan_mobile_server.R | 1408 +++++++-------- R/quan_mobile_ui.R | 444 ++-- R/quan_server.R | 1571 ++++++++--------- R/quan_ui.R | 414 ++-- R/run_functions.R | 54 R/thresholding_li.R | 98 - R/triangle.R | 94 - build/vignette.rds |binary inst/CITATION | 26 inst/doc/LFApp.R | 102 - inst/doc/LFApp.Rmd | 772 +++----- inst/doc/LFApp.html | 1993 +++++++++++----------- inst/markdown/CalibrationAnalysis(gam).Rmd | 229 +- inst/markdown/CalibrationAnalysis(lm).Rmd | 223 +- inst/markdown/CalibrationAnalysis(loess).Rmd | 232 +- man/0LFApp-package.Rd | 64 man/run_functions.Rd | 82 man/threshold_li.Rd | 80 man/triangle.Rd | 72 vignettes/LFApp.Rmd | 772 +++----- vignettes/Opt2Calibration.png |binary vignettes/lit.bib | 356 +-- 38 files changed, 12509 insertions(+), 12166 deletions(-)
Title: Statistical Metrics and Reporting Tool
Description: A 'Shiny'-based toolkit for item/test analysis. It is
designed for multiple-choice, true-false, and open-ended questions.
The toolkit is usable with datasets in 1-0 or other formats. Key
analyses include difficulty, discrimination, response-option analysis,
and reports. The classical test theory methods used are described in
Ebel and Frisbie (1991, ISBN:978-0132892314).
Author: Ahmet Caliskan [aut, cre],
Abdullah Faruk Kilic [aut]
Maintainer: Ahmet Caliskan <ahmetcaliskan1987@gmail.com>
Diff between examly versions 0.2.0 dated 2025-12-15 and 0.3 dated 2026-05-05
examly-0.2.0/examly/man/color_badge.Rd |only examly-0.2.0/examly/man/comment_overall_keys.Rd |only examly-0.2.0/examly/man/d_mode.Rd |only examly-0.2.0/examly/man/detect_id_cols.Rd |only examly-0.2.0/examly/man/difficulty_label_key.Rd |only examly-0.2.0/examly/man/discrimination_decision_key.Rd |only examly-0.2.0/examly/man/get_itemexam_quant.Rd |only examly-0.2.0/examly/man/grapes-or-or-grapes.Rd |only examly-0.2.0/examly/man/i18n_load.Rd |only examly-0.2.0/examly/man/i18n_t.Rd |only examly-0.2.0/examly/man/is_scored_01.Rd |only examly-0.2.0/examly/man/kr20.Rd |only examly-0.2.0/examly/man/norm_cols.Rd |only examly-0.2.0/examly/man/norm_letter.Rd |only examly-0.2.0/examly/man/parse_lc_bin.Rd |only examly-0.2.0/examly/man/parse_lc_raw.Rd |only examly-0.2.0/examly/man/parse_mc_bin.Rd |only examly-0.2.0/examly/man/parse_tf_bin.Rd |only examly-0.2.0/examly/man/pbiserial_rest.Rd |only examly-0.2.0/examly/man/pipe.Rd |only examly-0.2.0/examly/man/q_index.Rd |only examly-0.2.0/examly/man/student_counts.Rd |only examly-0.3/examly/DESCRIPTION | 24 examly-0.3/examly/MD5 | 47 examly-0.3/examly/NAMESPACE | 22 examly-0.3/examly/NEWS.md | 10 examly-0.3/examly/R/i18n.R | 146 examly-0.3/examly/R/utils-pipe.R | 28 examly-0.3/examly/R/utils.R | 753 +-- examly-0.3/examly/build/vignette.rds |binary examly-0.3/examly/inst/WORDLIST |only examly-0.3/examly/inst/doc/examly.R | 8 examly-0.3/examly/inst/doc/examly.html | 736 +-- examly-0.3/examly/inst/shinyapp/app.R | 4118 +++++++++-------- examly-0.3/examly/inst/shinyapp/i18n/en.json | 22 examly-0.3/examly/inst/shinyapp/i18n/tr.json | 22 36 files changed, 3220 insertions(+), 2716 deletions(-)
Title: Spectral Clustering-Based Method for Identifying B Cell Clones
Description: Provides a computational framework for identification of B cell clones from
Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main
functions are included (identicalClones, hierarchicalClones, and spectralClones)
that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins)
which share the same V gene, J gene and junction length.
Nouri N and Kleinstein SH (2018) <doi: 10.1093/bioinformatics/bty235>.
Nouri N and Kleinstein SH (2019) <doi: 10.1101/788620>.
Gupta NT, et al. (2017) <doi: 10.4049/jimmunol.1601850>.
Author: Nima Nouri [aut],
Edel Aron [ctb],
Robert Bjornson [ctb],
Gisela Gabernet [ctb],
Cole Jensen [ctb],
Huimin Lyu [ctb],
Susanna Marquez [ctb, cre],
Jason Vander Heiden [aut],
Steven Kleinstein [aut, cph]
Maintainer: Susanna Marquez <susanna.marquez@yale.edu>
Diff between scoper versions 1.4.0 dated 2026-01-08 and 1.5.0 dated 2026-05-05
DESCRIPTION | 13 ++- MD5 | 25 +++--- NEWS.md | 22 +++++ R/Functions.R | 164 +++++++++++++++++++++++++++++++++++-------- R/RcppExports.R | 8 ++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/Scoper-Vignette.pdf |binary man/hierarchicalClones.Rd | 84 ++++++++++++++++++++-- man/identicalClones.Rd | 9 +- man/scoper-package.Rd | 1 man/spectralClones.Rd | 8 +- src/RcppExports.cpp | 24 ++++++ src/fastDist.cpp |only 14 files changed, 301 insertions(+), 57 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-05 0.1.2
2024-08-26 0.1.0
Title: Join Gridded Weather Data to Event Tables
Description: High-level tools to attach gridded weather data from the NASA POWER Project
to event-based datasets. The package plans efficient spatio-temporal API calls via the 'nasapower'
R package, caches downloaded segments locally, and joins weather variables back to the input
table using exact or rolling joins. This package is not affiliated with or endorsed by NASA.
Author: Przemek Dolowy [aut, cre]
Maintainer: Przemek Dolowy <phdolowy@gmail.com>
Diff between weatherjoin versions 0.2.2 dated 2026-02-04 and 0.2.3 dated 2026-05-05
DESCRIPTION | 10 MD5 | 12 NEWS.md | 4 inst/doc/weatherjoin_vignette.Rmd | 636 ++++++++++++++++++------------------- inst/doc/weatherjoin_vignette.html | 8 man/weatherjoin-package.Rd | 2 vignettes/weatherjoin_vignette.Rmd | 636 ++++++++++++++++++------------------- 7 files changed, 657 insertions(+), 651 deletions(-)
Title: Interactive Analysis of UCSC Xena Data
Description: Provides functions and a Shiny application for downloading,
analyzing and visualizing datasets from UCSC Xena
(<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public
databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Author: Shixiang Wang [aut, cre] ,
Shensuo Li [aut],
Yi Xiong [aut] ,
Longfei Zhao [aut] ,
Kai Gu [aut] ,
Yin Li [aut],
Fei Zhao [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaShiny versions 2.2.0 dated 2025-08-01 and 2.2.1 dated 2026-05-05
DESCRIPTION | 8 ++-- MD5 | 24 ++++++------ NAMESPACE | 1 NEWS.md | 4 +- R/get_nonomics_value.R |only README.md | 18 ++++++--- build/vignette.rds |binary inst/doc/api.html | 28 +++++++-------- inst/shinyapp/modules/02_quick/modules-3-ccle-03-DrugT.R | 2 - inst/shinyapp/modules/02_quick/modules-3-ccle-04-DrugR.R | 2 - inst/shinyapp/server/global.R | 17 --------- inst/shinyapp/ui/global.R | 1 inst/shinyapp/utils_pkgs.R | 14 ++++++- man/get_nonomics_value.Rd |only 14 files changed, 63 insertions(+), 56 deletions(-)
Title: Wicked Fast, Accurate Quantiles Using t-Digests
Description: The t-Digest construction algorithm, by
Dunning, (2019) <doi:10.48550/arXiv.1902.04023>, uses a variant of 1-dimensional
k-means clustering to produce a very compact data structure that allows
accurate estimation of quantiles. This t-Digest data structure can be used
to estimate quantiles, compute other rank statistics or even to estimate
related measures like trimmed means. The advantage of the t-Digest over
previous digests for this purpose is that the t-Digest handles data with
full floating point resolution. The accuracy of quantile estimates produced
by t-Digests can be orders of magnitude more accurate than those produced
by previous digest algorithms. Methods are provided to create and update
t-Digests and retrieve quantiles from the accumulated distributions.
Author: Bob Rudis [aut, cre] ,
Ted Dunning [aut] ,
Andrew Werner [aut]
Maintainer: Bob Rudis <bob@rud.is>
This is a re-admission after prior archival of version 0.4.2 dated 2024-06-19
Diff between tdigest versions 0.4.2 dated 2024-06-19 and 0.4.3 dated 2026-05-05
DESCRIPTION | 34 +++++++++++++++++----------------- MD5 | 6 +++--- R/create.R | 2 +- src/tdigest-main.c | 32 ++++++++++++++++---------------- 4 files changed, 37 insertions(+), 37 deletions(-)
Title: LLM-Powered Code Generation, Error Fixing, and Chat for
'RStudio'
Description: An 'RStudio' addin that integrates large language model (LLM)
assistance directly into the code-editing workflow. Features include:
(1) generate R code from inline comments; (2) obtain LLM-assisted fixes for
console errors; (3) insert plain-English explanations of selected code
blocks; (4) a multi-turn Chat Panel with session-context awareness
(loaded packages, global objects, source editor contents, console history).
Supports 'OpenAI', 'Anthropic' (Claude), 'DeepSeek', 'Groq',
'Together AI', 'OpenRouter', 'Ollama' (fully local, no API key required),
and any 'OpenAI'-compatible custom endpoint (e.g. 'LM Studio', 'vLLM',
'llama.cpp').
Author: Shiyang Zheng [aut, cre]
Maintainer: Shiyang Zheng <shiyang.zheng@nottingham.ac.uk>
Diff between llmcoder versions 1.0.0 dated 2026-04-29 and 1.2.0 dated 2026-05-05
DESCRIPTION | 37 ++--- MD5 | 25 ++- NAMESPACE | 10 + R/api.R | 254 +++++++++++++++++++++++++++++++++++++- R/chat.R |only R/session-context.R |only inst/CITATION | 4 inst/rstudio/addins.dcf | 5 inst/www |only man/addin_chat_panel.Rd |only man/call_anthropic_history.Rd |only man/call_llm_history.Rd |only man/call_ollama_history.Rd |only man/call_openai_compat_history.Rd |only man/chat_js_handlers.Rd |only man/dot-get_console_history.Rd |only man/dot-js_esc.Rd |only man/escape_html.Rd |only man/safe_call_llm_history.Rd |only man/session_context_prompt.Rd |only man/session_context_report.Rd |only 21 files changed, 310 insertions(+), 25 deletions(-)
Title: Fitting Hidden Markov Models to Financial Data
Description: Fitting (hierarchical) hidden Markov models to financial data
via maximum likelihood estimation. See Oelschläger, L. and Adam, T.
"Detecting Bearish and Bullish Markets in Financial Time Series Using
Hierarchical Hidden Markov Models" (2021, Statistical Modelling)
<doi:10.1177/1471082X211034048> for a reference on the method. A user guide
is provided by the accompanying software paper "fHMM: Hidden Markov Models
for Financial Time Series in R", Oelschläger, L., Adam, T., and Michels, R.
(2024, Journal of Statistical Software) <doi:10.18637/jss.v109.i09>.
Author: Lennart Oelschlaeger [aut, cre] ,
Timo Adam [aut] ,
Rouven Michels [aut]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between fHMM versions 1.4.2 dated 2025-03-23 and 1.4.3 dated 2026-05-05
DESCRIPTION | 22 MD5 | 270 NAMESPACE | 236 NEWS.md | 294 R/RcppExports.R | 22 R/compare_models.R | 154 R/compute_T_star.R | 174 R/compute_ci.R | 136 R/compute_residuals.R | 248 R/data_and_models.R | 612 R/decode_states.R | 402 R/download_data.R | 336 R/fHMM-package.R | 192 R/fHMM_colors.R | 175 R/fHMM_controls.R | 2000 +- R/fHMM_data.R | 442 R/fHMM_events.R | 133 R/fHMM_likelihood.R | 480 R/fHMM_model.R | 928 - R/fHMM_parameters.R | 2283 +-- R/fHMM_sdds.R | 361 R/fit_model.R | 517 R/get_initial_values.R | 694 R/helpers.R | 134 R/parameter_labels.R | 156 R/plot.R | 1656 +- R/read_data.R | 510 R/reorder_states.R | 290 R/simulate_hmm.R | 436 README.md | 635 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 40 inst/doc/fHMM.R | 14 inst/doc/fHMM.Rmd | 108 inst/doc/fHMM.html | 934 - inst/doc/v01_model_definition.R | 14 inst/doc/v01_model_definition.Rmd | 104 inst/doc/v01_model_definition.html | 866 - inst/doc/v02_controls.R | 86 inst/doc/v02_controls.Rmd | 176 inst/doc/v02_controls.html | 1003 - inst/doc/v03_data_management.R | 94 inst/doc/v03_data_management.Rmd | 190 inst/doc/v03_data_management.html | 929 - inst/doc/v04_model_estimation.R | 84 inst/doc/v04_model_estimation.Rmd | 254 inst/doc/v04_model_estimation.html | 1139 - inst/doc/v05_state_decoding_and_prediction.R | 52 inst/doc/v05_state_decoding_and_prediction.Rmd | 148 inst/doc/v05_state_decoding_and_prediction.html | 949 - inst/doc/v06_model_checking.R | 46 inst/doc/v06_model_checking.Rmd | 132 inst/doc/v06_model_checking.html | 920 - inst/doc/v07_model_selection.R | 32 inst/doc/v07_model_selection.Rmd | 108 inst/doc/v07_model_selection.html | 915 - inst/extdata/dax.csv |18024 ++++++++++++------------ man/check_date.Rd | 42 man/compare_models.Rd | 60 man/compute_T_star.Rd | 62 man/compute_ci.Rd | 57 man/compute_residuals.Rd | 50 man/dax.Rd | 70 man/dax_model_2n.Rd | 82 man/dax_model_3t.Rd | 92 man/dax_vw_model.Rd | 94 man/decode_states.Rd | 149 man/download_data.Rd | 139 man/fHMM-package.Rd | 91 man/fHMM_colors.Rd | 84 man/fHMM_data.Rd | 151 man/fHMM_events.Rd | 84 man/fHMM_model.Rd | 192 man/fHMM_parameters.Rd | 336 man/fHMM_sdds.Rd | 128 man/find_closest_year.Rd | 38 man/fit_model.Rd | 352 man/get_initial_values.Rd | 103 man/list_to_vector.Rd | 40 man/ll_hmm.Rd | 265 man/nLL_hhmm.Rd | 47 man/nLL_hmm.Rd | 47 man/parameter_labels.Rd | 42 man/parameter_transformations.Rd | 473 man/plot.fHMM_data.Rd | 75 man/plot.fHMM_model.Rd | 126 man/plot_ll.Rd | 48 man/plot_pr.Rd | 42 man/plot_sdds.Rd | 56 man/plot_ts.Rd | 93 man/prepare_data.Rd | 63 man/read_data.Rd | 61 man/reorder_states.Rd | 98 man/set_controls.Rd | 675 man/sim_model_2gamma.Rd | 78 man/simulate_hmm.Rd | 278 man/simulate_observations.Rd | 89 man/spx.Rd | 72 man/unemp.Rd | 54 man/unemp_spx_model_3_2.Rd | 86 man/vw.Rd | 70 src/ll.cpp | 11 tests/testthat.R | 8 tests/testthat/test-compare_models.R | 40 tests/testthat/test-compute_T_star.R | 99 tests/testthat/test-compute_ci.R | 26 tests/testthat/test-compute_residuals.R | 46 tests/testthat/test-data_and_models.R | 88 tests/testthat/test-decode_states.R | 60 tests/testthat/test-download_data.R | 170 tests/testthat/test-fHMM_colors.R | 70 tests/testthat/test-fHMM_controls.R | 1260 - tests/testthat/test-fHMM_data.R | 120 tests/testthat/test-fHMM_events.R | 56 tests/testthat/test-fHMM_likelihood.R | 66 tests/testthat/test-fHMM_model.R | 96 tests/testthat/test-fHMM_parameters.R | 513 tests/testthat/test-fHMM_sdds.R | 214 tests/testthat/test-fit_model.R | 178 tests/testthat/test-get_initial_values.R | 118 tests/testthat/test-helpers.R | 88 tests/testthat/test-parameter_labels.R | 68 tests/testthat/test-plot.R | 232 tests/testthat/test-read_data.R | 42 tests/testthat/test-reorder_states.R | 12 tests/testthat/test-simulate_hmm.R | 100 vignettes/fHMM.Rmd | 108 vignettes/ref.bib | 662 vignettes/v01_model_definition.Rmd | 104 vignettes/v02_controls.Rmd | 176 vignettes/v03_data_management.Rmd | 190 vignettes/v04_model_estimation.Rmd | 254 vignettes/v05_state_decoding_and_prediction.Rmd | 148 vignettes/v06_model_checking.Rmd | 132 vignettes/v07_model_selection.Rmd | 108 136 files changed, 27276 insertions(+), 26110 deletions(-)
Title: Causal Graph Interface
Description: Create, query, and modify causal graphs. 'caugi' (Causal Graph
Interface) is a causality-first, high performance graph package that
provides a simple interface to build, structure, and examine causal
relationships.
Author: Frederik Fabricius-Bjerre [aut, cre, cph],
Johan Larsson [aut] ,
Michael Sachs [aut] ,
Bjarke Hautop Kristensen [aut]
Maintainer: Frederik Fabricius-Bjerre <frederik@fabriciusbjerre.dk>
Diff between caugi versions 1.1.0 dated 2026-03-20 and 1.2.0 dated 2026-05-05
caugi-1.1.0/caugi/man/dot-getter_output.Rd |only caugi-1.1.0/caugi/man/minimal_d_separator.Rd |only caugi-1.1.0/caugi/vignettes/performance.html |only caugi-1.1.0/caugi/vignettes/plotting.html |only caugi-1.2.0/caugi/DESCRIPTION | 6 caugi-1.2.0/caugi/MD5 | 149 - caugi-1.2.0/caugi/NAMESPACE | 3 caugi-1.2.0/caugi/NEWS.md | 36 caugi-1.2.0/caugi/R/adjustment.R | 86 caugi-1.2.0/caugi/R/as_caugi.R | 22 caugi-1.2.0/caugi/R/caugi.R | 10 caugi-1.2.0/caugi/R/caugi_to.R | 5 caugi-1.2.0/caugi/R/extendr-wrappers.R | 40 caugi-1.2.0/caugi/R/layout.R | 56 caugi-1.2.0/caugi/R/operations.R | 179 - caugi-1.2.0/caugi/R/queries.R | 512 ---- caugi-1.2.0/caugi/R/registry.R | 42 caugi-1.2.0/caugi/README.md | 4 caugi-1.2.0/caugi/build/partial.rdb |binary caugi-1.2.0/caugi/build/vignette.rds |binary caugi-1.2.0/caugi/inst/WORDLIST | 10 caugi-1.2.0/caugi/inst/doc/caugi.html | 11 caugi-1.2.0/caugi/inst/doc/package_use.html | 4 caugi-1.2.0/caugi/inst/doc/visualization.R | 101 caugi-1.2.0/caugi/inst/doc/visualization.Rmd | 291 +- caugi-1.2.0/caugi/inst/doc/visualization.html | 985 ++++----- caugi-1.2.0/caugi/man/add-caugi_plot-caugi_plot.Rd | 1 caugi-1.2.0/caugi/man/adjustment_set.Rd | 2 caugi-1.2.0/caugi/man/all_adjustment_sets_admg.Rd | 2 caugi-1.2.0/caugi/man/all_backdoor_sets.Rd | 2 caugi-1.2.0/caugi/man/as_caugi.Rd | 4 caugi-1.2.0/caugi/man/caugi.Rd | 10 caugi-1.2.0/caugi/man/caugi_layout.Rd | 14 caugi-1.2.0/caugi/man/caugi_layout_bipartite.Rd | 1 caugi-1.2.0/caugi/man/caugi_layout_circle.Rd |only caugi-1.2.0/caugi/man/caugi_layout_fruchterman_reingold.Rd | 1 caugi-1.2.0/caugi/man/caugi_layout_kamada_kawai.Rd | 1 caugi-1.2.0/caugi/man/caugi_layout_sugiyama.Rd | 1 caugi-1.2.0/caugi/man/caugi_layout_tiered.Rd | 1 caugi-1.2.0/caugi/man/caugi_plot.Rd | 1 caugi-1.2.0/caugi/man/d_separated.Rd | 2 caugi-1.2.0/caugi/man/districts.Rd | 2 caugi-1.2.0/caugi/man/divide-caugi_plot-caugi_plot.Rd | 1 caugi-1.2.0/caugi/man/figures/README-unnamed-chunk-5-1.png |binary caugi-1.2.0/caugi/man/is_acyclic.Rd | 3 caugi-1.2.0/caugi/man/is_valid_adjustment_admg.Rd | 2 caugi-1.2.0/caugi/man/is_valid_backdoor.Rd | 2 caugi-1.2.0/caugi/man/minimal_separator.Rd |only caugi-1.2.0/caugi/man/neighbors.Rd | 14 caugi-1.2.0/caugi/man/plot.Rd | 1 caugi-1.2.0/caugi/man/registry.Rd | 12 caugi-1.2.0/caugi/src/rust/Cargo.lock | 195 - caugi-1.2.0/caugi/src/rust/Cargo.toml | 3 caugi-1.2.0/caugi/src/rust/src/graph/admg/adjustment.rs | 40 caugi-1.2.0/caugi/src/rust/src/graph/admg/mod.rs | 46 caugi-1.2.0/caugi/src/rust/src/graph/admg/msep.rs | 278 ++ caugi-1.2.0/caugi/src/rust/src/graph/ag/msep.rs | 114 + caugi-1.2.0/caugi/src/rust/src/graph/alg.rs | 1 caugi-1.2.0/caugi/src/rust/src/graph/alg/min_msep.rs |only caugi-1.2.0/caugi/src/rust/src/graph/builder.rs | 110 - caugi-1.2.0/caugi/src/rust/src/graph/dag/transforms.rs | 404 +++ caugi-1.2.0/caugi/src/rust/src/graph/layout/circle.rs |only caugi-1.2.0/caugi/src/rust/src/graph/layout/force_directed.rs | 131 - caugi-1.2.0/caugi/src/rust/src/graph/layout/mod.rs | 14 caugi-1.2.0/caugi/src/rust/src/graph/session.rs | 188 + caugi-1.2.0/caugi/src/rust/src/graph/view.rs | 29 caugi-1.2.0/caugi/src/rust/src/lib.rs | 1062 ++++++++-- caugi-1.2.0/caugi/src/rust/vendor.tar.xz |binary caugi-1.2.0/caugi/tests/testthat/test-admg.R | 25 caugi-1.2.0/caugi/tests/testthat/test-as_caugi.R | 8 caugi-1.2.0/caugi/tests/testthat/test-builder-rust.R | 87 caugi-1.2.0/caugi/tests/testthat/test-caugi_graph.R | 22 caugi-1.2.0/caugi/tests/testthat/test-caugi_to.R | 16 caugi-1.2.0/caugi/tests/testthat/test-circle-layout.R |only caugi-1.2.0/caugi/tests/testthat/test-normalize-latent-structure.R | 106 caugi-1.2.0/caugi/tests/testthat/test-operations.R | 239 ++ caugi-1.2.0/caugi/tests/testthat/test-queries.R | 105 caugi-1.2.0/caugi/tests/testthat/test-registry.R | 46 caugi-1.2.0/caugi/tests/testthat/test-separation.R | 261 +- caugi-1.2.0/caugi/vignettes/visualization.Rmd | 291 +- 80 files changed, 4296 insertions(+), 2157 deletions(-)
Title: Fit Bounded Continuous Item Response Theory Models to Data
Description: Bounded continuous data are encountered in many areas of test application.
Examples include visual analogue scales used in the measurement of personality, mood,
depression, and quality of life; item response times from tests with item deadlines;
confidence ratings; and pain intensity ratings. Using this package, item response theory (IRT)
models suitable for bounded continuous item scores can be fitted to data within a Bayesian framework.
The package draws on posterior sampling facilities provided by R-package 'rstan' (Stan Development Team, 2025)<https://mc-stan.org/>.
Available models include the Beta IRT model by Noel and Dauvier (2007)<doi:10.1177/0146621605287691>, the continuous response
model by Samejima (1973)<doi:10.1007/BF03372160>, the unbounded normal model by Mellenbergh (1994)<doi:10.1207/s15327906mbr2903_2>,
and the Simplex IRT model by Flores et al. (2020)<doi:10.1007/978-3-030-43469-4_8>. All models can be
fitted with or without zero-one i [...truncated...]
Author: Dylan Molenaar [aut, cre]
Maintainer: Dylan Molenaar <d.molenaar@uva.nl>
Diff between BoundIRT versions 0.0.1 dated 2026-04-20 and 0.5.0 dated 2026-05-05
DESCRIPTION | 16 - MD5 | 79 ++--- NAMESPACE | 2 R/BoundIRT-package.R | 102 +++--- R/SB_mean.R |only R/bridgeBIRT.R | 2 R/bridgeBIRTinf.R | 166 +++++----- R/bridgeBIRTno.R | 97 +++--- R/cov_pairwise.R |only R/fitBIRT.R | 341 +++++++++++---------- R/iccBIRT.R | 7 R/latregBIRT.R | 176 +++++------ R/loglikBIRT.R |only R/plot.BoundIRT.R | 172 +++++----- R/print.bridgeBIRT.R | 2 R/rBIRT.R | 2 R/repBIRT.R |only R/rsimpl.R |only data/female.rda |only data/out_beta.rda |binary inst/stan/BetaIRT.stan | 15 inst/stan/BetaIRT_inf.stan | 49 +-- inst/stan/NormalIRT.stan | 14 inst/stan/NormalIRT_inf.stan | 46 +- inst/stan/SimplexIRT.stan | 14 inst/stan/SimplexIRT_inf.stan | 46 +- man/Abasement.Rd | 84 ++--- man/BoundIRT-package.Rd | 8 man/bridgeBIRT.Rd | 146 ++++----- man/coef.BoundIRT.Rd | 98 +++--- man/fitBIRT.Rd | 344 +++++++++++---------- man/latregBIRT.Rd | 154 ++++----- man/loglikBIRT.Rd |only man/out_beta.Rd | 97 +++--- man/plot.BoundIRT.Rd | 180 +++++------ man/rBIRT.Rd | 225 +++++++------- man/repBIRT.Rd |only src/RcppExports.cpp | 2 src/psimplex.c |only src/stanExports_BetaIRT.h | 203 ++++++++---- src/stanExports_BetaIRT_inf.h | 615 ++++++++++++++++++++++----------------- src/stanExports_NormalIRT.h | 100 ++++-- src/stanExports_NormalIRT_inf.h | 412 ++++++++++++++------------ src/stanExports_SimplexIRT.h | 102 ++++-- src/stanExports_SimplexIRT_inf.h | 414 ++++++++++++++------------ 45 files changed, 2482 insertions(+), 2050 deletions(-)
Title: Thematic Cartography
Description: Create and integrate thematic maps in your workflow. This package
helps to design various cartographic representations such as proportional
symbols, choropleth or typology maps. It also offers several functions to
display layout elements that improve the graphic presentation of maps
(e.g. scale bar, north arrow, title, labels). 'mapsf' maps 'sf' objects on
'base' graphics.
Author: Timothee Giraud [cre, aut] ,
Hugues Pecout [ctb] ,
Ronan Ysebaert [ctb] ,
Elina Marveaux [ctb] ,
Ian Fellows [cph] ,
Jim Lemon [cph] ,
Danielle Navarro [cph]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between mapsf versions 1.1.0 dated 2026-01-10 and 1.2.0 dated 2026-05-05
DESCRIPTION | 23 +- MD5 | 262 ++++++++++++----------- NAMESPACE | 67 +++++- NEWS.md | 62 ++++- R/deprecated.R |only R/mf_annotation.R | 52 ++-- R/mf_arrow.R | 10 R/mf_background.R | 46 +--- R/mf_base.R | 18 + R/mf_choro.R | 122 ++++++++--- R/mf_credits.R | 3 R/mf_distr.R | 151 +++++++++---- R/mf_doc_utils.R | 36 ++- R/mf_export.R | 35 +-- R/mf_frame.R | 2 R/mf_get_borders.R | 11 - R/mf_get_breaks.R | 46 ++-- R/mf_get_leg_pos.R | 20 - R/mf_get_links.R | 8 R/mf_get_mtq.R | 39 +++ R/mf_get_pal.R | 9 R/mf_get_pencil.R | 32 +- R/mf_get_ratio.R | 7 R/mf_grad.R | 50 ++-- R/mf_graticule.R | 18 + R/mf_init.R | 54 +++- R/mf_inset.R | 84 ------- R/mf_label.R | 7 R/mf_layout.R | 4 R/mf_legend.R | 59 +++-- R/mf_logo.R |only R/mf_map.R | 426 +++++++-------------------------------- R/mf_map_help.R |only R/mf_map_utils.R | 52 +++- R/mf_pkg_utils.R | 164 ++++++++++++++- R/mf_png.R | 13 - R/mf_prop.R | 28 +- R/mf_prop_choro.R | 54 +++- R/mf_prop_typo.R | 58 +++-- R/mf_raster.R | 89 +++++--- R/mf_raster_utils.R | 25 -- R/mf_scale.R | 16 - R/mf_shadow.R | 22 +- R/mf_svg.R | 16 - R/mf_symb.R | 35 ++- R/mf_symb_choro.R | 67 ++++-- R/mf_text.R |only R/mf_text_utils.R |only R/mf_theme.R | 60 ++++- R/mf_theme_utils.R | 14 - R/mf_title.R | 6 R/mf_typo.R | 28 +- R/mf_worldmap.R | 5 R/package.R | 1 README.md | 2 build/vignette.rds |binary inst/doc/mapsf.html | 20 - inst/gpkg/mtq.gpkg |binary inst/tinytest/test_annotation.R | 20 - inst/tinytest/test_arrow.R | 2 inst/tinytest/test_background.R | 1 inst/tinytest/test_breaks.R | 1 inst/tinytest/test_credits.R | 1 inst/tinytest/test_distr.R | 5 inst/tinytest/test_export.R | 27 -- inst/tinytest/test_frame.R | 1 inst/tinytest/test_get_borders.R | 5 inst/tinytest/test_get_links.R | 13 - inst/tinytest/test_get_mtq.R |only inst/tinytest/test_get_pencil.R | 1 inst/tinytest/test_get_ratio.R | 5 inst/tinytest/test_graticule.R | 1 inst/tinytest/test_init.R | 18 + inst/tinytest/test_inset.R | 1 inst/tinytest/test_label.R | 3 inst/tinytest/test_layout.R | 1 inst/tinytest/test_legend.R | 4 inst/tinytest/test_logo.R |only inst/tinytest/test_map.R | 2 inst/tinytest/test_map_b.R | 9 inst/tinytest/test_map_c.R | 16 - inst/tinytest/test_map_g.R | 14 - inst/tinytest/test_map_p.R | 57 +++-- inst/tinytest/test_map_pc.R | 30 +- inst/tinytest/test_map_pt.R | 27 +- inst/tinytest/test_map_s.R | 3 inst/tinytest/test_map_sc.R | 12 - inst/tinytest/test_map_t.R | 14 - inst/tinytest/test_pal.R | 1 inst/tinytest/test_scale.R | 1 inst/tinytest/test_shadow.R | 3 inst/tinytest/test_text.R |only inst/tinytest/test_theme.R | 3 inst/tinytest/test_title.R | 4 inst/tinytest/tests_worldmap.R | 1 man/figures/example1-1.png |binary man/mapsf-deprecated.Rd |only man/mapsf.Rd | 1 man/mf_annotation.Rd | 32 +- man/mf_arrow.Rd | 6 man/mf_background.Rd | 18 - man/mf_base.Rd | 12 - man/mf_choro.Rd | 28 +- man/mf_credits.Rd | 3 man/mf_distr.Rd | 52 ++++ man/mf_export.Rd | 14 - man/mf_frame.Rd | 2 man/mf_get_breaks.Rd | 49 +++- man/mf_get_mtq.Rd | 46 +++- man/mf_get_pal.Rd | 4 man/mf_grad.Rd | 23 +- man/mf_graticule.Rd | 10 man/mf_init.Rd | 17 + man/mf_label.Rd | 2 man/mf_layout.Rd | 4 man/mf_legend.Rd | 59 +++-- man/mf_logo.Rd |only man/mf_map.Rd | 382 ++++++---------------------------- man/mf_map_base.Rd |only man/mf_map_choro.Rd |only man/mf_map_grad.Rd |only man/mf_map_prop.Rd |only man/mf_map_prop_choro.Rd |only man/mf_map_prop_typo.Rd |only man/mf_map_symb.Rd |only man/mf_map_symb_choro.Rd |only man/mf_map_typo.Rd |only man/mf_png.Rd | 2 man/mf_prop.Rd | 18 + man/mf_prop_choro.Rd | 28 +- man/mf_prop_typo.Rd | 26 +- man/mf_raster.Rd | 62 +++-- man/mf_scale.Rd | 2 man/mf_shadow.Rd | 22 +- man/mf_svg.Rd | 2 man/mf_symb.Rd | 22 +- man/mf_symb_choro.Rd | 20 + man/mf_text.Rd |only man/mf_theme.Rd | 39 ++- man/mf_title.Rd | 5 man/mf_typo.Rd | 26 +- man/mf_worldmap.Rd | 4 142 files changed, 2101 insertions(+), 1786 deletions(-)
Title: Standardized Git Repository Data
Description: Obtain standardized data from multiple 'Git' services, including 'GitHub' and 'GitLab'.
Designed to be 'Git' service-agnostic, this package assists teams with activities spread across various
'Git' platforms by providing a unified way to access repository data.
Author: Maciej Banas [aut, cre],
Kamil Koziej [aut],
Karolina Marcinkowska [aut],
Matt Secrest [aut]
Maintainer: Maciej Banas <banasmaciek@gmail.com>
Diff between GitStats versions 2.5.1 dated 2026-04-23 and 2.5.2 dated 2026-05-05
DESCRIPTION | 6 - MD5 | 44 ++++---- NEWS.md | 11 ++ R/EngineGraphQLGitHub.R | 47 ++++++-- R/EngineGraphQLGitLab.R | 84 ++++++++++++--- R/EngineRest.R | 60 +++++++++++ R/EngineRestGitLab.R | 10 - R/GQLQueryGitLab.R | 9 + R/GitHost.R | 7 - R/GitHostGitLab.R | 18 +-- R/GitStats.R | 14 +- R/set_host.R | 12 ++ inst/doc/store_data.html | 84 ++++++++------- tests/testthat/_snaps/00-get_orgs-GitLab.md | 20 +-- tests/testthat/_snaps/01-get_repos-GitHub.md | 7 + tests/testthat/_snaps/01-get_repos-GitLab.md | 7 + tests/testthat/_snaps/set_host.md | 94 ----------------- tests/testthat/helper-fixtures-orgs.R | 8 - tests/testthat/test-00-get_orgs-GitLab.R | 53 ++++++--- tests/testthat/test-01-get_repos-GitHub.R | 9 + tests/testthat/test-01-get_repos-GitLab.R | 48 ++++++-- tests/testthat/test-GitHost-helpers.R | 65 +++--------- tests/testthat/test-set_host.R | 145 +++++++++++++++------------ 23 files changed, 492 insertions(+), 370 deletions(-)
Title: Fast and Stable Fitting of Generalized Linear Models using
'RcppEigen'
Description: Fits generalized linear models efficiently using 'RcppEigen'. The iteratively reweighted least squares
implementation utilizes the step-halving approach of Marschner (2011) <doi:10.32614/RJ-2011-012> to help safeguard
against convergence issues.
Author: Jared Huling [aut, cre],
Douglas Bates [cph],
Dirk Eddelbuettel [cph],
Romain Francois [cph],
Yixuan Qiu [cph],
Noah Greifer [ctb]
Maintainer: Jared Huling <jaredhuling@gmail.com>
Diff between fastglm versions 0.0.4 dated 2025-12-16 and 0.1.0 dated 2026-05-05
fastglm-0.0.4/fastglm/R/glm_methods.R |only fastglm-0.0.4/fastglm/inst/doc/quick-usage-guide-to-the-fastglm-package.R |only fastglm-0.0.4/fastglm/inst/doc/quick-usage-guide-to-the-fastglm-package.Rmd |only fastglm-0.0.4/fastglm/inst/doc/quick-usage-guide-to-the-fastglm-package.html |only fastglm-0.0.4/fastglm/man/deviance.Rd |only fastglm-0.0.4/fastglm/man/family.Rd |only fastglm-0.0.4/fastglm/man/logLik.Rd |only fastglm-0.0.4/fastglm/man/print.Rd |only fastglm-0.0.4/fastglm/man/residuals.Rd |only fastglm-0.0.4/fastglm/man/summary.Rd |only fastglm-0.0.4/fastglm/vignettes/gen_data-1.png |only fastglm-0.0.4/fastglm/vignettes/quick-usage-guide-to-the-fastglm-package.Rmd |only fastglm-0.1.0/fastglm/DESCRIPTION | 28 fastglm-0.1.0/fastglm/MD5 | 111 +- fastglm-0.1.0/fastglm/NAMESPACE | 26 fastglm-0.1.0/fastglm/R/RcppExports.R | 32 fastglm-0.1.0/fastglm/R/fastglm-hurdle.R |only fastglm-0.1.0/fastglm/R/fastglm-methods.R |only fastglm-0.1.0/fastglm/R/fastglm-nb.R |only fastglm-0.1.0/fastglm/R/fastglm-zi.R |only fastglm-0.1.0/fastglm/R/fastglm.R | 1 fastglm-0.1.0/fastglm/R/fastglm_fit.R |only fastglm-0.1.0/fastglm/R/fit_glm.R | 266 ++++- fastglm-0.1.0/fastglm/R/negbin.R |only fastglm-0.1.0/fastglm/R/streaming.R |only fastglm-0.1.0/fastglm/R/zzz.R |only fastglm-0.1.0/fastglm/README.md | 86 - fastglm-0.1.0/fastglm/build/vignette.rds |binary fastglm-0.1.0/fastglm/inst/doc/benchmarks-fastglm.Rmd |only fastglm-0.1.0/fastglm/inst/doc/benchmarks-fastglm.html |only fastglm-0.1.0/fastglm/inst/doc/count-firth-fastglm.R |only fastglm-0.1.0/fastglm/inst/doc/count-firth-fastglm.Rmd |only fastglm-0.1.0/fastglm/inst/doc/count-firth-fastglm.html |only fastglm-0.1.0/fastglm/inst/doc/fastglm-overview.R |only fastglm-0.1.0/fastglm/inst/doc/fastglm-overview.Rmd |only fastglm-0.1.0/fastglm/inst/doc/fastglm-overview.html |only fastglm-0.1.0/fastglm/inst/doc/fastglm.R |only fastglm-0.1.0/fastglm/inst/doc/fastglm.Rmd |only fastglm-0.1.0/fastglm/inst/doc/fastglm.html |only fastglm-0.1.0/fastglm/inst/doc/large-data-fastglm.R |only fastglm-0.1.0/fastglm/inst/doc/large-data-fastglm.Rmd |only fastglm-0.1.0/fastglm/inst/doc/large-data-fastglm.html |only fastglm-0.1.0/fastglm/inst/include/chunk_source.h |only fastglm-0.1.0/fastglm/inst/include/families.h |only fastglm-0.1.0/fastglm/inst/include/glm.h | 512 ++++++---- fastglm-0.1.0/fastglm/inst/include/glm_base.h | 12 fastglm-0.1.0/fastglm/inst/include/glm_sparse.h |only fastglm-0.1.0/fastglm/inst/include/nb_theta.h |only fastglm-0.1.0/fastglm/inst/include/trunc_count.h |only fastglm-0.1.0/fastglm/inst/include/zi.h |only fastglm-0.1.0/fastglm/man/fastglm-sandwich.Rd |only fastglm-0.1.0/fastglm/man/fastglm.Rd | 13 fastglm-0.1.0/fastglm/man/fastglmPure.Rd | 22 fastglm-0.1.0/fastglm/man/fastglm_fit.Rd |only fastglm-0.1.0/fastglm/man/fastglm_hurdle.Rd |only fastglm-0.1.0/fastglm/man/fastglm_nb.Rd |only fastglm-0.1.0/fastglm/man/fastglm_streaming.Rd |only fastglm-0.1.0/fastglm/man/fastglm_zi.Rd |only fastglm-0.1.0/fastglm/man/figures |only fastglm-0.1.0/fastglm/man/negbin.Rd |only fastglm-0.1.0/fastglm/man/predict.fastglm.Rd | 6 fastglm-0.1.0/fastglm/man/summary.fastglm.Rd |only fastglm-0.1.0/fastglm/man/vcov.fastglm.Rd |only fastglm-0.1.0/fastglm/man/vcovHC.fastglm.Rd |only fastglm-0.1.0/fastglm/src/RcppExports.cpp | 206 +++- fastglm-0.1.0/fastglm/src/fit_glm_dense.cpp | 226 +++- fastglm-0.1.0/fastglm/src/fit_glm_firth.cpp |only fastglm-0.1.0/fastglm/src/fit_glm_hurdle.cpp |only fastglm-0.1.0/fastglm/src/fit_glm_nb.cpp |only fastglm-0.1.0/fastglm/src/fit_glm_zi.cpp |only fastglm-0.1.0/fastglm/src/fit_streaming_glm.cpp |only fastglm-0.1.0/fastglm/tests |only fastglm-0.1.0/fastglm/vignettes/benchmarks-fastglm.Rmd |only fastglm-0.1.0/fastglm/vignettes/benchmarks-figs |only fastglm-0.1.0/fastglm/vignettes/count-firth-fastglm.Rmd |only fastglm-0.1.0/fastglm/vignettes/fastglm-overview.Rmd |only fastglm-0.1.0/fastglm/vignettes/fastglm.Rmd |only fastglm-0.1.0/fastglm/vignettes/large-data-fastglm.Rmd |only 78 files changed, 1174 insertions(+), 373 deletions(-)
Title: Tools for Spatial Data
Description: For curve, surface and function fitting with an emphasis
on splines, spatial data, geostatistics, and spatial statistics. The major methods
include cubic, and thin plate splines, Kriging, and compactly supported
covariance functions for large data sets. The splines and Kriging methods are
supported by functions that can determine the smoothing parameter
(nugget and sill variance) and other covariance function parameters by cross
validation and also by restricted maximum likelihood. For Kriging
there is an easy to use function that also estimates the correlation
scale (range parameter). A major feature is that any covariance function
implemented in R and following a simple format can be used for
spatial prediction. There are also many useful functions for plotting
and working with spatial data as images. This package also contains
an implementation of sparse matrix methods for large spatial data
sets and currently requires the sparse matrix (spam) package. Use
help(fields) to get star [...truncated...]
Author: Douglas Nychka [aut, cre],
Reinhard Furrer [aut],
John Paige [aut],
Stephan Sain [aut],
Florian Gerber [aut],
Matthew Iverson [aut],
Rider Johnson [aut]
Maintainer: Douglas Nychka <douglasnychka@gmail.com>
Diff between fields versions 17.1 dated 2025-09-08 and 17.3 dated 2026-05-05
fields-17.1/fields/R/Mines.colors.R |only fields-17.3/fields/DESCRIPTION | 31 -- fields-17.3/fields/MD5 | 188 +++++++------- fields-17.3/fields/NAMESPACE | 4 fields-17.3/fields/R/Krig.R | 32 +- fields-17.3/fields/R/Krig.family.R | 70 ++--- fields-17.3/fields/R/augmentPredictionGrid.R | 11 fields-17.3/fields/R/envelopePlot.R | 10 fields-17.3/fields/R/mKrig.R | 102 ++++--- fields-17.3/fields/R/mKrigCheckXY.R | 42 +-- fields-17.3/fields/R/mKrigFastPredict.R | 30 +- fields-17.3/fields/R/mKrigMLEGrid.R | 14 - fields-17.3/fields/R/mKrigMLEJoint.R | 12 fields-17.3/fields/R/panelPlotExample.R |only fields-17.3/fields/R/predict.Krig.R | 48 ++- fields-17.3/fields/R/predict.fastTps.R | 16 - fields-17.3/fields/R/predict.mKrig.R | 38 ++ fields-17.3/fields/R/predictSE.mKrig.R | 24 - fields-17.3/fields/R/predictSurface.Krig.R | 36 +- fields-17.3/fields/R/predictSurface.mKrig.R | 41 +-- fields-17.3/fields/R/predictSurfaceSE.R | 16 - fields-17.3/fields/R/print.spatialProcessSummary.R | 26 + fields-17.3/fields/R/profileMLE.R | 2 fields-17.3/fields/R/sim.spatialProcess.R | 2 fields-17.3/fields/R/spatialProcess.R | 98 ++++--- fields-17.3/fields/R/spatialProcessSetDefaults.R | 16 + fields-17.3/fields/R/summary.mKrig.R | 6 fields-17.3/fields/R/summary.spatialProcess.R | 12 fields-17.3/fields/R/surface.family.R | 4 fields-17.3/fields/R/tim.colors.R | 49 ++- fields-17.3/fields/R/unrollZGrid.R | 26 - fields-17.3/fields/data/Mines.colors.rda |only fields-17.3/fields/data/NorthAmericanRainfall2.rda |binary fields-17.3/fields/data/datalist | 1 fields-17.3/fields/man/CO.Rd | 4 fields-17.3/fields/man/FORTRAN.internal.Rd | 8 fields-17.3/fields/man/Krig.Rd | 24 + fields-17.3/fields/man/Krig.engine.default.Rd | 4 fields-17.3/fields/man/Krig.null.function.Rd | 12 fields-17.3/fields/man/Krig.replicates.Rd | 12 fields-17.3/fields/man/NorthAmericanRainfall.Rd | 8 fields-17.3/fields/man/QTps.Rd | 4 fields-17.3/fields/man/Tps.Rd | 18 - fields-17.3/fields/man/envelopePlot.Rd | 7 fields-17.3/fields/man/grid.list.Rd | 16 - fields-17.3/fields/man/image.plot.Rd | 4 fields-17.3/fields/man/mKrig.Rd | 45 ++- fields-17.3/fields/man/mKrigMLE.Rd | 8 fields-17.3/fields/man/panelPlot.Rd |only fields-17.3/fields/man/predict.Krig.Rd | 22 + fields-17.3/fields/man/predictSE.Krig.Rd | 67 +++- fields-17.3/fields/man/predictSurface.Rd | 61 ++-- fields-17.3/fields/man/sim.Krig.Rd | 32 +- fields-17.3/fields/man/spatialProcess.Rd | 126 +++++++-- fields-17.3/fields/man/surface.Krig.Rd | 4 fields-17.3/fields/man/tim.colors.Rd | 69 ++--- fields-17.3/fields/src/fieldsF77Code.f | 23 + fields-17.3/fields/src/init.c | 9 fields-17.3/fields/tests/Krig.Z.test.R | 54 ++-- fields-17.3/fields/tests/Krig.Z.test.Rout.save | 10 fields-17.3/fields/tests/Krig.se.W.Rout.save | 8 fields-17.3/fields/tests/Krig.se.grid.test.Rout.save | 8 fields-17.3/fields/tests/Krig.se.test.Rout.save | 8 fields-17.3/fields/tests/Krig.test.Rout.save | 8 fields-17.3/fields/tests/Krig.test.W.R | 6 fields-17.3/fields/tests/Krig.test.W.Rout.save | 8 fields-17.3/fields/tests/KrigGCVREML.test.Rout.save | 8 fields-17.3/fields/tests/Likelihood.test.Rout.save | 8 fields-17.3/fields/tests/SEFixedParameters.R | 4 fields-17.3/fields/tests/SEFixedParameters.Rout.save | 8 fields-17.3/fields/tests/Tps.test.Rout.save | 8 fields-17.3/fields/tests/Wend.test.Rout.save | 8 fields-17.3/fields/tests/cov.test.Rout.save | 8 fields-17.3/fields/tests/cov.test2.Rout.save | 8 fields-17.3/fields/tests/derivative.test.Rout.save | 8 fields-17.3/fields/tests/diag.multiply.test.Rout.save | 8 fields-17.3/fields/tests/evlpoly.test.Rout.save | 8 fields-17.3/fields/tests/fastTpsPredict.test.Rout.save | 8 fields-17.3/fields/tests/mKrig.Z.R | 30 +- fields-17.3/fields/tests/mKrig.Z.Rout.save | 18 - fields-17.3/fields/tests/mKrig.parameters.test.Rout.save | 8 fields-17.3/fields/tests/mKrig.se.test.R | 2 fields-17.3/fields/tests/mKrig.se.test.Rout.save | 8 fields-17.3/fields/tests/mKrig.test.R | 20 + fields-17.3/fields/tests/mKrig.test.Rout.save | 10 fields-17.3/fields/tests/mKrigMLETest.Rout.save | 8 fields-17.3/fields/tests/mKrigREMLTest.Rout.save | 8 fields-17.3/fields/tests/misc.test.Rout.save | 8 fields-17.3/fields/tests/offGridWeights.test.Rout.save | 2 fields-17.3/fields/tests/offGridWeightsNEW.test.Rout.save | 2 fields-17.3/fields/tests/spam.test.Rout.save | 8 fields-17.3/fields/tests/sreg.test.Rout.save | 8 fields-17.3/fields/tests/testO3LocalExample.R | 17 - fields-17.3/fields/tests/testO3LocalExample.Rout.save | 10 fields-17.3/fields/tests/testZCommon.R | 42 +-- fields-17.3/fields/tests/testZCommon.Rout.save | 22 - fields-17.3/fields/tests/vgram.test.Rout.save | 8 97 files changed, 1186 insertions(+), 849 deletions(-)
Title: Linear Mixed Models - An Introduction with Applications in
Veterinary Research
Description: R Codes and Datasets for Duchateau, L. and Janssen, P. and Rowlands, G. J. (1998). Linear Mixed Models. An Introduction with applications in Veterinary Research. International Livestock Research Institute.
Author: Muhammad Yaseen [aut, cre] ,
Luc Duchateau [ctb],
Paul Janssen [ctb],
John Rowlands [ctb]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2018-04-22
Diff between VetResearchLMM versions 1.0.0 dated 2018-04-22 and 1.1.0 dated 2026-05-05
DESCRIPTION | 48 ++++-- MD5 | 114 ++++++++++------ NAMESPACE | 6 NEWS.md | 30 ++++ R/Examp1.3.2.R | 11 - R/Examp2.2.1.7.R | 28 +++- R/Examp2.4.2.2.R | 160 +++++++++++------------ R/Examp2.4.3.1.R | 46 +++--- R/Examp2.5.1.1.R | 52 +++---- R/Examp2.5.2.1.R | 51 +++---- R/Examp2.5.3.1.R | 92 ++++++------- R/Examp2.5.4.1.R | 79 +++++------ R/Examp2.6.1.R | 83 +++++------ R/Examp3.1.R | 156 +++++++++++----------- R/Examp3.2.R | 55 ++++--- R/Examp3.3.R | 291 ++++++++++++++++++------------------------ R/VetResearchLMM-package.R |only R/emmeans_mixed_model.R |only R/ex121.R | 20 +- R/ex124.R | 19 +- R/ex125.R | 19 +- R/ex127.R | 17 +- R/ex31.R | 23 +-- R/ex32.R | 20 +- R/ex33.R | 19 +- R/report_mixed_model.R |only README.md | 68 ++++++++- build |only inst |only man/Examp1.3.2.Rd | 9 - man/Examp2.2.1.7.Rd |only man/Examp2.4.2.2.Rd | 149 ++++++++++----------- man/Examp2.4.3.1.Rd | 40 ++--- man/Examp2.5.1.1.Rd | 46 +++--- man/Examp2.5.2.1.Rd | 48 +++--- man/Examp2.5.3.1.Rd | 85 ++++++------ man/Examp2.5.4.1.Rd | 74 +++++----- man/Examp2.6.1.Rd | 80 +++++------ man/Examp3.1.Rd | 153 +++++++++++----------- man/Examp3.2.Rd | 52 ++++--- man/Examp3.3.Rd | 278 ++++++++++++++++++---------------------- man/VetResearchLMM-package.Rd |only man/emmeans_mixed_model.Rd |only man/ex121.Rd | 21 +-- man/ex124.Rd | 20 +- man/ex125.Rd | 20 +- man/ex127.Rd | 18 +- man/ex31.Rd | 24 +-- man/ex32.Rd | 21 +-- man/ex33.Rd | 20 +- man/report_mixed_model.Rd |only tests/testthat |only tests/testthat.R | 4 vignettes |only 54 files changed, 1384 insertions(+), 1285 deletions(-)
More information about VetResearchLMM at CRAN
Permanent link
Title: Generate Publication-Ready Statistical Tables
Description: A collection of functions for generating frequency tables and cross-tabulations of categorical variables. The resulting tables can be exported to various formats (Excel, PDF, HTML, etc.) with extensive formatting and layout customization options.
Author: Bhas Abdulsamad [aut, cre, cph]
Maintainer: Bhas Abdulsamad <aeabdulsamad@gmail.com>
Diff between tsg versions 0.1.3 dated 2026-02-28 and 0.1.4 dated 2026-05-05
DESCRIPTION | 13 MD5 | 91 + NAMESPACE | 4 NEWS.md | 28 R/docx.R |only R/facade.R | 13 R/generate_crosstab.R | 1544 +++++++++++++++++++++++++------ R/generate_frequency.R | 402 ++++---- R/generate_helpers.R | 47 R/generate_modifiers.R | 37 R/generate_output.R | 23 R/helpers.R | 287 +++++ R/html.R |only R/tsg-package.R | 1 R/tsg_format.R | 12 R/utils.R | 17 R/xlsx_components.R | 52 - R/xlsx_facade.R | 72 - R/xlsx_helpers.R | 2 R/xlsx_writer.R | 103 +- R/zzz.R | 4 README.md | 62 + build/vignette.rds |binary inst/doc/advanced.R |only inst/doc/advanced.Rmd |only inst/doc/advanced.html |only inst/doc/facade.R |only inst/doc/facade.Rmd |only inst/doc/facade.html |only inst/doc/output-formats.R |only inst/doc/output-formats.Rmd |only inst/doc/output-formats.html |only inst/doc/tsg.R | 158 --- inst/doc/tsg.Rmd | 312 ++---- inst/doc/tsg.html | 1094 +++++++++------------ inst/extdata/facade/docx |only inst/extdata/facade/html |only man/add_footnote.Rd | 31 man/generate_crosstab.Rd | 35 man/generate_frequency.Rd | 19 man/generate_output.Rd | 15 man/get_tsg_facade.Rd | 2 man/gt_apply_numeric_format.Rd |only man/gt_apply_spanners.Rd |only man/gt_apply_text_decoration.Rd |only man/parse_excel_numfmt_decimals.Rd |only man/tsg_to_flextable.Rd |only man/tsg_to_gt.Rd |only man/write_docx.Rd |only man/write_html.Rd |only man/write_pdf.Rd |only tests/testthat/test-generate_crosstab.R | 583 +++++++++++ tests/testthat/test-generate_frequency.R | 119 +- tests/testthat/test-generate_helpers.R |only tests/testthat/test-generate_output.R |only tests/testthat/test-helpers.R | 139 ++ vignettes/advanced.Rmd |only vignettes/facade.Rmd |only vignettes/output-formats.Rmd |only vignettes/tsg.Rmd | 312 ++---- 60 files changed, 3716 insertions(+), 1917 deletions(-)
Title: A Tidy Framework for Changepoint Detection Analysis
Description: Changepoint detection algorithms for R are widespread but have
different interfaces and reporting conventions.
This makes the comparative analysis of results difficult.
We solve this problem by providing a tidy, unified interface for several
different changepoint detection algorithms.
We also provide consistent numerical and graphical reporting leveraging
the 'broom' and 'ggplot2' packages.
Author: Benjamin S. Baumer [aut, cre, cph] ,
Biviana Marcela Suarez Sierra [aut] ,
Arrigo Coen [aut] ,
Carlos A. Taimal [aut] ,
Xueheng Shi [ctb]
Maintainer: Benjamin S. Baumer <ben.baumer@gmail.com>
This is a re-admission after prior archival of version 1.0.4 dated 2026-02-05
Diff between tidychangepoint versions 1.0.4 dated 2026-02-05 and 1.0.5 dated 2026-05-05
DESCRIPTION | 8 +-- MD5 | 88 ++++++++++++++++++++--------------------- NEWS.md | 4 + R/pkg-stats.R | 2 R/segment_cptga.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/tidychangepoint.html | 37 +++++++---------- man/BMDL.Rd | 10 ++-- man/DataCPSim.Rd | 2 man/HQC.Rd | 12 ++--- man/MBIC.Rd | 12 ++--- man/MDL.Rd | 10 ++-- man/SIC.Rd | 14 +++--- man/as.model.Rd | 18 ++++---- man/as.segmenter.Rd | 26 ++++++------ man/as_year.Rd | 2 man/binary2tau.Rd | 2 man/build_gabin_population.Rd | 4 - man/changepoints.Rd | 16 +++---- man/compare_models.Rd | 6 +- man/diagnose.Rd | 14 +++--- man/evaluate_cpts.Rd | 2 man/file_name.Rd | 4 - man/fit_arima.Rd | 20 ++++----- man/fit_lmshift.Rd | 18 ++++---- man/fit_meanshift.Rd | 18 ++++---- man/fit_meanvar.Rd | 18 ++++---- man/fit_nhpp.Rd | 18 ++++---- man/fitness.Rd | 20 ++++----- man/fun_cpt.Rd | 18 ++++---- man/iweibull.Rd | 8 +-- man/model_args.Rd | 32 +++++++------- man/model_name.Rd | 30 ++++++------- man/model_variance.Rd | 2 man/reexports.Rd | 2 man/regions.Rd | 4 - man/seg_params.Rd | 12 ++--- man/segment.Rd | 4 - man/segment_coen.Rd | 2 man/tbl_coef.Rd | 2 man/test_set.Rd | 4 - man/tidychangepoint-package.Rd | 1 man/tidycpt-class.Rd | 2 man/whomademe.Rd | 18 ++++---- 45 files changed, 275 insertions(+), 273 deletions(-)
More information about tidychangepoint at CRAN
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Title: Improved Score Tests for Generalized Linear Models
Description: A set of functions to obtain modified score test for generalized linear models.
Author: Iago Gine-Vazquez [cre] ,
Antonio Hermes M. da Silva-Junior [aut],
Damiao N. da Silva [aut],
Silvia L. P. Ferrari [ctb]
Maintainer: Iago Gine-Vazquez <iago.gin-vaz@protonmail.com>
This is a re-admission after prior archival of version 0.1-3 dated 2017-02-16
Diff between mdscore versions 0.1-3 dated 2017-02-16 and 0.1-4 dated 2026-05-05
DESCRIPTION | 28 +++++++++++++++++++--------- MD5 | 9 +++++---- README.md |only inst/CITATION | 8 ++++---- man/mdscore.Rd | 2 +- man/summary.mdscore.Rd | 2 +- 6 files changed, 30 insertions(+), 19 deletions(-)
Title: Monte Carlo Simulation-Based Sample-Size Planning for Item
Response Theory
Description: Provides a pipeline application programming interface (API) for
Monte Carlo simulation-based sample-size planning in item response theory
(IRT). Implements the 10-decision framework
from Schroeders and Gnambs (2025) <doi:10.1177/25152459251314798> as a
three-step workflow: specify the data-generating model with irt_design(),
add study conditions with irt_study(), and run simulations with
irt_simulate(). Supports one-parameter logistic (1PL), two-parameter
logistic (2PL), and graded response models with missing-completely-at-random
(MCAR), missing-at-random (MAR), booklet, and linking missingness
mechanisms. Results include mean squared error (MSE), bias, root mean
squared error (RMSE), standard error (SE), and coverage criteria with
summary and plot methods.
Author: Stephen Ward [aut, cre]
Maintainer: Stephen Ward <stephen_ward+irtsim@abhome.co>
Diff between irtsim versions 0.1.1 dated 2026-04-23 and 0.1.2 dated 2026-05-05
irtsim-0.1.1/irtsim/inst/doc/paper-reproduction-gaps.html |only irtsim-0.1.1/irtsim/inst/doc/paper-reproduction-gaps.html.asis |only irtsim-0.1.1/irtsim/vignettes/paper-reproduction-gaps.html.asis |only irtsim-0.1.2/irtsim/DESCRIPTION | 8 irtsim-0.1.2/irtsim/MD5 | 37 - irtsim-0.1.2/irtsim/NEWS.md | 47 + irtsim-0.1.2/irtsim/R/irt_design.R | 16 irtsim-0.1.2/irtsim/R/recommended_n.R | 82 ++- irtsim-0.1.2/irtsim/build/partial.rdb |binary irtsim-0.1.2/irtsim/build/vignette.rds |binary irtsim-0.1.2/irtsim/inst/doc/choosing-item-parameters.R |only irtsim-0.1.2/irtsim/inst/doc/choosing-item-parameters.Rmd |only irtsim-0.1.2/irtsim/inst/doc/choosing-item-parameters.html |only irtsim-0.1.2/irtsim/inst/doc/irtsim.R |only irtsim-0.1.2/irtsim/inst/doc/irtsim.Rmd |only irtsim-0.1.2/irtsim/inst/doc/irtsim.html |only irtsim-0.1.2/irtsim/inst/doc/paper-example-2-mcar.html | 7 irtsim-0.1.2/irtsim/inst/doc/paper-example-3-grm.html | 7 irtsim-0.1.2/irtsim/man/irt_design.Rd | 5 irtsim-0.1.2/irtsim/man/recommended_n.Rd | 37 + irtsim-0.1.2/irtsim/tests/testthat/test-grm_integration.R | 9 irtsim-0.1.2/irtsim/tests/testthat/test-irt_design.R | 45 + irtsim-0.1.2/irtsim/tests/testthat/test-recommended_n.R | 267 +++++++++- irtsim-0.1.2/irtsim/vignettes/choosing-item-parameters.Rmd |only irtsim-0.1.2/irtsim/vignettes/irtsim.Rmd |only 25 files changed, 496 insertions(+), 71 deletions(-)
Title: DRESS - A Continuous Framework for Structural Graph Refinement
Description: DRESS is a deterministic, parameter-free framework for
continuous structural graph refinement. It iterates a nonlinear dynamical
system on real-valued edge similarities and produces a graph fingerprint as
a sorted edge-value vector once the iteration reaches a prescribed stopping
criterion. The resulting
fingerprint is self-contained, isomorphism-invariant by construction,
reproducible across vertex labelings under the reference implementation,
numerically robust in practice, and efficient to compute with
straightforward parallelization and distribution.
Author: Eduar Castrillo Velilla [aut, cre]
Maintainer: Eduar Castrillo Velilla <velicast@outlook.com>
Diff between dress.graph versions 0.6.2 dated 2026-03-23 and 0.8.3 dated 2026-05-05
dress.graph-0.6.2/dress.graph/man/delta_dress_fit.Rd |only dress.graph-0.6.2/dress.graph/man/dress_fit.Rd |only dress.graph-0.6.2/dress.graph/src/dress/delta_dress.h |only dress.graph-0.8.3/dress.graph/DESCRIPTION | 28 dress.graph-0.8.3/dress.graph/MD5 | 71 - dress.graph-0.8.3/dress.graph/NAMESPACE | 6 dress.graph-0.8.3/dress.graph/R/cuda.R | 142 ++- dress.graph-0.8.3/dress.graph/R/dress.R | 216 ++++ dress.graph-0.8.3/dress.graph/R/mpi.R | 424 ++++++++ dress.graph-0.8.3/dress.graph/R/omp.R |only dress.graph-0.8.3/dress.graph/README.md | 4 dress.graph-0.8.3/dress.graph/configure | 4 dress.graph-0.8.3/dress.graph/man/DRESS.Rd | 8 dress.graph-0.8.3/dress.graph/man/cuda.Rd | 16 dress.graph-0.8.3/dress.graph/man/delta_fit.Rd |only dress.graph-0.8.3/dress.graph/man/dress_version.Rd |only dress.graph-0.8.3/dress.graph/man/fit.Rd |only dress.graph-0.8.3/dress.graph/man/mpi.Rd | 25 dress.graph-0.8.3/dress.graph/man/nabla_fit.Rd |only dress.graph-0.8.3/dress.graph/man/omp.Rd |only dress.graph-0.8.3/dress.graph/src/delta_dress.c | 83 + dress.graph-0.8.3/dress.graph/src/delta_dress_cuda.c | 84 + dress.graph-0.8.3/dress.graph/src/delta_dress_impl.c | 227 ++-- dress.graph-0.8.3/dress.graph/src/delta_dress_impl.h | 44 dress.graph-0.8.3/dress.graph/src/delta_dress_omp.c |only dress.graph-0.8.3/dress.graph/src/dress.c | 230 ++-- dress.graph-0.8.3/dress.graph/src/dress/cuda/dress.h | 10 dress.graph-0.8.3/dress.graph/src/dress/cuda/dress_cuda.h | 81 + dress.graph-0.8.3/dress.graph/src/dress/dress.h | 149 ++- dress.graph-0.8.3/dress.graph/src/dress/mpi/dress.h | 58 - dress.graph-0.8.3/dress.graph/src/dress/mpi/dress_mpi.h | 214 +++- dress.graph-0.8.3/dress.graph/src/dress/omp |only dress.graph-0.8.3/dress.graph/src/dress_cuda.cu | 131 +- dress.graph-0.8.3/dress.graph/src/dress_cuda_r.c | 241 ++++- dress.graph-0.8.3/dress.graph/src/dress_histogram.c |only dress.graph-0.8.3/dress.graph/src/dress_histogram.h |only dress.graph-0.8.3/dress.graph/src/dress_mpi.c | 661 +++++++++++++- dress.graph-0.8.3/dress.graph/src/dress_mpi_r.c | 580 +++++++++++- dress.graph-0.8.3/dress.graph/src/dress_omp.c |only dress.graph-0.8.3/dress.graph/src/dress_omp_r.c |only dress.graph-0.8.3/dress.graph/src/dress_r.c | 319 +++++- dress.graph-0.8.3/dress.graph/src/nabla_dress.c |only dress.graph-0.8.3/dress.graph/src/nabla_dress_cuda.c |only dress.graph-0.8.3/dress.graph/src/nabla_dress_impl.c |only dress.graph-0.8.3/dress.graph/src/nabla_dress_impl.h |only dress.graph-0.8.3/dress.graph/src/nabla_dress_omp.c |only 46 files changed, 3292 insertions(+), 764 deletions(-)
Title: Validate Brazilian Administrative Registers - Valida Documentos
Description: Contains functions to validate administrative register as
CPF (Cadastro de Pessoa Fisica), CNPJ (Cadastro de Pessoa Juridica),
PIS (Programa de Integracao Social),
CNES (Cadastro Nacional de Saude).
Builds from and improves on previous package from IPEA validaRA <https://github.com/ipea/validaRA>.
It can check individual registers or help creating a table summarizing validity of a set.
Author: Gustavo Coelho [aut],
Lucas Mation [aut] ,
Rodrigo Borges [ctb, cre] ,
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Rodrigo Borges <rodrigo.borges@ipea.gov.br>
Diff between documentosbr versions 0.1.8 dated 2026-04-27 and 0.2.0 dated 2026-05-05
DESCRIPTION | 6 +- MD5 | 12 ++--- NEWS.md | 3 + inst/doc/documentosbr.html | 4 - src/Makevars | 2 src/convert2int.cpp | 10 +++- src/ra/Cnpj.hpp | 93 +++++++++++++++++++++++---------------------- 7 files changed, 72 insertions(+), 58 deletions(-)
Title: Calculation of IBD Probabilities
Description: For biparental, three and four-way crosses Identity by Descent
(IBD) probabilities can be calculated using Hidden Markov Models and
inheritance vectors following Lander and Green
(<https://www.jstor.org/stable/29713>) and Huang
(<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic
packages for streamlining the analysis of typical plant breeding experiments
developed by Biometris.
Author: Martin Boer [aut] ,
Bart-Jan van Rossum [aut, cre] ,
Wenhao Li [ctb] ,
Johannes Kruisselbrink [ctb]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenIBD versions 1.0.10 dated 2026-03-02 and 1.0.11 dated 2026-05-05
DESCRIPTION | 10 ++-- MD5 | 20 ++++----- NEWS.md | 5 ++ R/readRABBIT.R | 87 +++++++++++++++++++++++++++++++++++++++++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/IBDCalculations.html | 64 ++++++++++++++---------------- inst/doc/IBDFileFormat.html | 4 - man/statgenIBD-package.Rd | 1 src/RcppExports.cpp | 6 +- src/calcIBD.cpp | 12 ++--- 11 files changed, 146 insertions(+), 63 deletions(-)
Title: Policy Learning
Description: Package for learning and evaluating (subgroup) policies via doubly robust loss functions. Policy learning methods include doubly robust blip/conditional average treatment effect learning and sequential policy tree learning. Methods for (subgroup) policy evaluation include doubly robust cross-fitting and online estimation/sequential validation. See Nordland and Holst (2022) <doi:10.48550/arXiv.2212.02335> for documentation and references.
Author: Andreas Nordland [aut, cre],
Klaus Holst [aut]
Maintainer: Andreas Nordland <andreasnordland@gmail.com>
Diff between polle versions 1.6.2 dated 2025-12-04 and 1.6.3 dated 2026-05-05
DESCRIPTION | 6 ++-- MD5 | 26 +++++++++---------- NEWS.md | 4 +++ R/c_models.R | 27 ++++++++++++-------- R/policy_def.R | 30 ++++++++++++++++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/policy_data.html | 52 +++++++++++++++++++-------------------- inst/doc/policy_eval.html | 52 +++++++++++++++++++-------------------- inst/doc/policy_learn.html | 52 +++++++++++++++++++-------------------- man/policy_def.Rd | 15 ++++++++++- man/policy_eval.Rd | 2 - man/reexports.Rd | 2 - tests/testthat/test-policy_def.R | 51 ++++++++++++++++++++++++++++++++++++++ 14 files changed, 206 insertions(+), 113 deletions(-)
Title: Bayesian Nonparametric Conditional Density Modeling in Causal
Inference and Clustering with a Heavy-Tail Extension
Description: The presence of a heavy tail is a feature of many scenarios when risk management
involves extremely rare events. While parametric distributions may give adequate
representation of the mode of data, they are likely to misrepresent heavy tails,
and completely nonparametric approaches lack a rigorous mechanism for
tail extrapolation; see Pickands (1975) <doi:10.1214/aos/1176343003>. The
package 'CausalMixGPD' implements tools for Bayesian analysis of heavy-tailed
outcomes by combining Dirichlet process mixture models for the body of the
distribution with optional generalized Pareto tails. The method allows
for unconditional and covariate-modulated mixtures, implements MCMC estimation
using 'nimble', and extends to mixtures of different arms' outcomes with
application to causal inference in the Rubin (1974)
<doi:10.1037/h0037350> framework. Posterior summaries include density
functions, quantiles, expected values, survival functions, and causal effects,
with an emphasis on tail [...truncated...]
Author: Arnab Aich [aut, cre]
Maintainer: Arnab Aich <aaich@fsu.edu>
Diff between CausalMixGPD versions 0.7.0 dated 2026-04-21 and 0.8.0 dated 2026-05-05
CausalMixGPD-0.7.0/CausalMixGPD/man/ate.Rd |only CausalMixGPD-0.7.0/CausalMixGPD/man/cate.Rd |only CausalMixGPD-0.7.0/CausalMixGPD/man/cqte.Rd |only CausalMixGPD-0.7.0/CausalMixGPD/man/plot.causalmixgpd_ate.Rd |only CausalMixGPD-0.7.0/CausalMixGPD/man/plot.causalmixgpd_causal_fit.Rd |only CausalMixGPD-0.7.0/CausalMixGPD/man/plot.causalmixgpd_causal_predict.Rd |only CausalMixGPD-0.7.0/CausalMixGPD/man/plot.dpmixgpd_cluster_bundle.Rd |only CausalMixGPD-0.7.0/CausalMixGPD/man/plot.dpmixgpd_cluster_labels.Rd |only CausalMixGPD-0.7.0/CausalMixGPD/man/plot.dpmixgpd_cluster_psm.Rd |only CausalMixGPD-0.7.0/CausalMixGPD/man/plot.mixgpd_fitted.Rd |only CausalMixGPD-0.7.0/CausalMixGPD/man/qte.Rd |only CausalMixGPD-0.8.0/CausalMixGPD/DESCRIPTION | 20 CausalMixGPD-0.8.0/CausalMixGPD/MD5 | 125 CausalMixGPD-0.8.0/CausalMixGPD/NAMESPACE | 19 CausalMixGPD-0.8.0/CausalMixGPD/R/build-run.R | 14 CausalMixGPD-0.8.0/CausalMixGPD/R/causal.R | 6519 +++++----- CausalMixGPD-0.8.0/CausalMixGPD/R/cluster.R | 109 CausalMixGPD-0.8.0/CausalMixGPD/R/data-datasets.R | 24 CausalMixGPD-0.8.0/CausalMixGPD/R/glue.R | 16 CausalMixGPD-0.8.0/CausalMixGPD/R/internal.R | 43 CausalMixGPD-0.8.0/CausalMixGPD/R/methods.R | 404 CausalMixGPD-0.8.0/CausalMixGPD/R/wrappers.R | 56 CausalMixGPD-0.8.0/CausalMixGPD/inst/CITATION | 8 CausalMixGPD-0.8.0/CausalMixGPD/inst/doc/cmgpd_causal.html | 22 CausalMixGPD-0.8.0/CausalMixGPD/inst/doc/cmgpd_clustering.R | 7 CausalMixGPD-0.8.0/CausalMixGPD/inst/doc/cmgpd_clustering.Rmd | 44 CausalMixGPD-0.8.0/CausalMixGPD/inst/doc/cmgpd_clustering.html | 43 CausalMixGPD-0.8.0/CausalMixGPD/inst/doc/cmgpd_one_arm.html | 22 CausalMixGPD-0.8.0/CausalMixGPD/inst/replication |only CausalMixGPD-0.8.0/CausalMixGPD/man/ate.causalmixgpd_causal_fit.Rd |only CausalMixGPD-0.8.0/CausalMixGPD/man/build_causal_bundle.Rd | 360 CausalMixGPD-0.8.0/CausalMixGPD/man/build_code_from_spec.Rd | 1 CausalMixGPD-0.8.0/CausalMixGPD/man/build_constants_from_spec.Rd | 1 CausalMixGPD-0.8.0/CausalMixGPD/man/build_dimensions_from_spec.Rd | 1 CausalMixGPD-0.8.0/CausalMixGPD/man/build_inits_from_spec.Rd | 1 CausalMixGPD-0.8.0/CausalMixGPD/man/build_monitors_from_spec.Rd | 1 CausalMixGPD-0.8.0/CausalMixGPD/man/build_nimble_bundle.Rd | 246 CausalMixGPD-0.8.0/CausalMixGPD/man/cate.causalmixgpd_causal_fit.Rd |only CausalMixGPD-0.8.0/CausalMixGPD/man/causal_alt_pos500_p3_k3.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/causal_alt_pos500_p5_k4_tail.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/causal_alt_real500_p4_k2.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/causal_pos500_p3_k2.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/cluster_profiles.Rd |only CausalMixGPD-0.8.0/CausalMixGPD/man/cqte.causalmixgpd_causal_fit.Rd |only CausalMixGPD-0.8.0/CausalMixGPD/man/dpmgpd.causal.Rd | 17 CausalMixGPD-0.8.0/CausalMixGPD/man/dpmgpd.cluster.Rd | 20 CausalMixGPD-0.8.0/CausalMixGPD/man/dpmix.causal.Rd | 17 CausalMixGPD-0.8.0/CausalMixGPD/man/dpmix.cluster.Rd | 20 CausalMixGPD-0.8.0/CausalMixGPD/man/nc_pos200_k3.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/nc_posX100_p3_k2.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/nc_posX100_p4_k3.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/nc_posX100_p5_k4.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/nc_pos_tail200_k4.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/nc_real200_k2.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/nc_realX100_p3_k2.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/nc_realX100_p5_k3.Rd | 2 CausalMixGPD-0.8.0/CausalMixGPD/man/plot.causalmixgpd_qte.Rd | 65 CausalMixGPD-0.8.0/CausalMixGPD/man/plot.dpmixgpd_cluster_fit.Rd | 156 CausalMixGPD-0.8.0/CausalMixGPD/man/plot.mixgpd_fit.Rd | 62 CausalMixGPD-0.8.0/CausalMixGPD/man/plot.mixgpd_predict.Rd | 25 CausalMixGPD-0.8.0/CausalMixGPD/man/predict.dpmixgpd_cluster_fit.Rd | 4 CausalMixGPD-0.8.0/CausalMixGPD/man/print.dpmixgpd_cluster_bundle.Rd | 4 CausalMixGPD-0.8.0/CausalMixGPD/man/print.dpmixgpd_cluster_fit.Rd | 4 CausalMixGPD-0.8.0/CausalMixGPD/man/print.dpmixgpd_cluster_labels.Rd | 4 CausalMixGPD-0.8.0/CausalMixGPD/man/print.dpmixgpd_cluster_psm.Rd | 4 CausalMixGPD-0.8.0/CausalMixGPD/man/print.mixgpd_predict.Rd |only CausalMixGPD-0.8.0/CausalMixGPD/man/qte.causalmixgpd_causal_fit.Rd |only CausalMixGPD-0.8.0/CausalMixGPD/man/summary.dpmixgpd_cluster_bundle.Rd | 4 CausalMixGPD-0.8.0/CausalMixGPD/man/summary.dpmixgpd_cluster_fit.Rd | 4 CausalMixGPD-0.8.0/CausalMixGPD/man/summary.dpmixgpd_cluster_labels.Rd | 4 CausalMixGPD-0.8.0/CausalMixGPD/man/summary.dpmixgpd_cluster_psm.Rd | 4 CausalMixGPD-0.8.0/CausalMixGPD/tests/testthat/test-reviewer-fixes.R |only CausalMixGPD-0.8.0/CausalMixGPD/vignettes/cmgpd_clustering.Rmd | 44 73 files changed, 4637 insertions(+), 3955 deletions(-)
Title: Sumerian Cuneiform Text Analysis
Description: Provides functions for converting transliterated Sumerian texts to sign names and cuneiform characters,
creating and querying dictionaries, analyzing the structure of
Sumerian words, and creating translations. Includes a built-in dictionary and supports both
forward lookup (Sumerian to English) and reverse lookup (English to
Sumerian).
Author: Robin Wellmann [aut, cre]
Maintainer: Robin Wellmann <ro.wellmann@gmail.com>
Diff between sumer versions 1.5.0 dated 2026-04-07 and 1.6.0 dated 2026-05-05
DESCRIPTION | 6 MD5 | 20 R/beautify_translations.R | 6 R/plot_sign_grammar.R | 1 inst/doc/getting-started.R | 4 inst/doc/getting-started.Rmd | 4 inst/doc/getting-started.html | 125 - inst/doc/translating-texts.html | 6 inst/extdata/etcsl_mapping.txt | 2 inst/extdata/sumer-dictionary.txt | 2984 ++++++++++++++++++++++++++------------ vignettes/getting-started.Rmd | 4 11 files changed, 2171 insertions(+), 991 deletions(-)
Title: Soil Organic Carbon and CN Ratio Driven Nitrogen Modelling
Framework
Description: Can be used to model the fate of soil organic carbon and soil organic nitrogen and to calculate N mineralisation rates. Provides a framework that numerically solves differential equations of soil organic carbon models based on first-order kinetics and extends these models to include the nitrogen component. The name 'sorcering' is an acronym for 'Soil ORganic Carbon & CN Ratio drIven Nitrogen modellinG framework'.
Author: Marc Scherstjanoi [aut, cre],
Rene Dechow [aut]
Maintainer: Marc Scherstjanoi <marc.scherstjanoi@thuenen.de>
Diff between sorcering versions 1.2.2 dated 2026-02-17 and 1.2.3 dated 2026-05-05
DESCRIPTION | 8 ++-- MD5 | 22 ++++++------ NEWS.md | 9 +++++ build/partial.rdb |binary build/sorcering.pdf |binary build/stage23.rdb |binary inst/REFERENCES.bib | 3 - inst/doc/sorcering.pdf |binary src/Makevars.win | 2 - src/RcppExports.cpp | 60 ++++++++++++++++----------------- src/sorcering.cpp | 70 +++++++++++++++++++-------------------- vignettes/sorcering_vignette.pdf |binary 12 files changed, 90 insertions(+), 84 deletions(-)
Title: Additional Functions for 'GeoPAT' 2
Description: Supports analysis of spatial data processed with the 'GeoPAT' 2
software <https://github.com/Nowosad/geopat2>.
Available features include creation of a grid based on the 'GeoPAT' 2
grid header file and reading a 'GeoPAT' 2 text outputs.
Author: Jakub Nowosad [aut, cre] ,
Space Informatics Lab [cph]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between rgeopat2 versions 0.4.0 dated 2023-09-18 and 0.4.1 dated 2026-05-05
DESCRIPTION | 13 +++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 1 - R/gpat_create_grid.R | 32 ++++++++++++++++---------------- R/gpat_read_txt.R | 20 ++++++++++++-------- README.md | 2 +- man/figures/README-example-1.png |binary man/gpat_st_make_grid.Rd | 6 +++--- man/rgeopat2-package.Rd | 5 +++++ 9 files changed, 52 insertions(+), 43 deletions(-)
Title: Analysis of Surface Plasmon Resonance Data
Description: Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.
Author: Janice McCarthy Developer [aut, cre, cph],
Kan Li Dev [aut],
S. Moses Dennison [aut],
Georgia D. Tomaras [aut]
Maintainer: Janice McCarthy Developer <janice.mccarthy@duke.edu>
This is a re-admission after prior archival of version 0.1.0 dated 2024-08-26
Diff between htrSPRanalysis versions 0.1.0 dated 2024-08-26 and 0.1.2 dated 2026-05-05
htrSPRanalysis-0.1.0/htrSPRanalysis/vignettes/htrSPRanalysis-vignette_files |only htrSPRanalysis-0.1.2/htrSPRanalysis/DESCRIPTION | 8 htrSPRanalysis-0.1.2/htrSPRanalysis/MD5 | 91 --- htrSPRanalysis-0.1.2/htrSPRanalysis/R/InputProcessingFunctions.R | 28 - htrSPRanalysis-0.1.2/htrSPRanalysis/R/RTFunctions.R | 35 - htrSPRanalysis-0.1.2/htrSPRanalysis/R/UserFunctions.R | 18 htrSPRanalysis-0.1.2/htrSPRanalysis/inst/doc/htrSPRanalysis-vignette.R | 38 + htrSPRanalysis-0.1.2/htrSPRanalysis/inst/doc/htrSPRanalysis-vignette.Rmd | 43 + htrSPRanalysis-0.1.2/htrSPRanalysis/inst/doc/htrSPRanalysis-vignette.html | 275 ++++------ htrSPRanalysis-0.1.2/htrSPRanalysis/man/process_input.Rd | 4 htrSPRanalysis-0.1.2/htrSPRanalysis/vignettes/htrSPRanalysis-vignette.Rmd | 43 + 11 files changed, 290 insertions(+), 293 deletions(-)
More information about htrSPRanalysis at CRAN
Permanent link
Title: Functions and Data Sets for "That's Weird: Anomaly Detection
Using R" by Rob J Hyndman
Description: All functions and data sets required for the examples in the book
Hyndman (2026) "That's Weird: Anomaly Detection Using R" <https://OTexts.com/weird/>.
All packages needed to run the examples are also loaded.
Author: Rob Hyndman [aut, cre, cph] ,
RStudio [cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between weird versions 2.0.0 dated 2026-01-27 and 2.1.0 dated 2026-05-05
weird-2.0.0/weird/tests/testthat/surprisals.R |only weird-2.1.0/weird/DESCRIPTION | 15 - weird-2.1.0/weird/MD5 | 138 +++++++------ weird-2.1.0/weird/NAMESPACE | 5 weird-2.1.0/weird/NEWS.md | 45 ++-- weird-2.1.0/weird/R/bagplot.R | 6 weird-2.1.0/weird/R/datasets.R | 22 +- weird-2.1.0/weird/R/dist_density.R | 51 +++-- weird-2.1.0/weird/R/dist_kde.R | 91 +++++++-- weird-2.1.0/weird/R/gg_density.R | 10 weird-2.1.0/weird/R/gg_density_layer.R | 7 weird-2.1.0/weird/R/grubbs.R | 18 + weird-2.1.0/weird/R/hampel.R | 9 weird-2.1.0/weird/R/hdr.R | 16 + weird-2.1.0/weird/R/kde_bandwidth.R | 19 + weird-2.1.0/weird/R/lof_scores.R | 2 weird-2.1.0/weird/R/mvscale.R |only weird-2.1.0/weird/R/peirce.R | 14 - weird-2.1.0/weird/R/stray.R | 4 weird-2.1.0/weird/R/surprisal_utils.R | 34 +-- weird-2.1.0/weird/R/surprisals.R | 14 - weird-2.1.0/weird/R/surprisals_data.R | 15 - weird-2.1.0/weird/R/surprisals_models.R | 141 +++++++++++--- weird-2.1.0/weird/R/utils.R | 7 weird-2.1.0/weird/R/weird.R | 3 weird-2.1.0/weird/R/wine_reviews.R | 5 weird-2.1.0/weird/README.md | 51 ++--- weird-2.1.0/weird/data/cricket_batting.rda |binary weird-2.1.0/weird/man/bagplot.Rd | 6 weird-2.1.0/weird/man/cricket_batting.Rd | 5 weird-2.1.0/weird/man/dist_density.Rd | 3 weird-2.1.0/weird/man/dist_kde.Rd | 7 weird-2.1.0/weird/man/fetch_wine_reviews.Rd | 2 weird-2.1.0/weird/man/figures/README-of-boxplot-1.png |binary weird-2.1.0/weird/man/figures/README-of-boxplot-2.png |binary weird-2.1.0/weird/man/figures/README-of-boxplot-3.png |binary weird-2.1.0/weird/man/figures/README-of-boxplot2-1.png |binary weird-2.1.0/weird/man/figures/README-of-boxplot2-2.png |binary weird-2.1.0/weird/man/figures/README-of-boxplot3-1.png |binary weird-2.1.0/weird/man/figures/README-of-boxplot3-2.png |binary weird-2.1.0/weird/man/figures/README-of-density-1.png |binary weird-2.1.0/weird/man/figures/README-of-density2-1.png |binary weird-2.1.0/weird/man/figures/weird-hex.png |binary weird-2.1.0/weird/man/fr_mortality.Rd | 5 weird-2.1.0/weird/man/gg_density.Rd | 4 weird-2.1.0/weird/man/gg_hdrboxplot.Rd | 2 weird-2.1.0/weird/man/grubbs_anomalies.Rd | 6 weird-2.1.0/weird/man/hampel_anomalies.Rd | 6 weird-2.1.0/weird/man/hdr_table.Rd | 8 weird-2.1.0/weird/man/kde_bandwidth.Rd | 15 - weird-2.1.0/weird/man/lof_scores.Rd | 2 weird-2.1.0/weird/man/mvscale.Rd |only weird-2.1.0/weird/man/n01.Rd | 5 weird-2.1.0/weird/man/oldfaithful.Rd | 5 weird-2.1.0/weird/man/peirce_anomalies.Rd | 6 weird-2.1.0/weird/man/reexports.Rd | 5 weird-2.1.0/weird/man/stray_anomalies.Rd | 2 weird-2.1.0/weird/man/stray_scores.Rd | 2 weird-2.1.0/weird/man/surprisals.Rd | 15 - weird-2.1.0/weird/man/surprisals_data.Rd | 21 +- weird-2.1.0/weird/man/surprisals_model.Rd | 32 ++- weird-2.1.0/weird/man/weird-package.Rd | 5 weird-2.1.0/weird/tests/testthat/test_bagplot.R |only weird-2.1.0/weird/tests/testthat/test_datasets.R |only weird-2.1.0/weird/tests/testthat/test_dist_density.R | 14 + weird-2.1.0/weird/tests/testthat/test_dist_kde1.R | 55 +++++ weird-2.1.0/weird/tests/testthat/test_dist_kde2.R | 15 + weird-2.1.0/weird/tests/testthat/test_grubbs.R |only weird-2.1.0/weird/tests/testthat/test_hampel.R |only weird-2.1.0/weird/tests/testthat/test_hdr.R |only weird-2.1.0/weird/tests/testthat/test_interpolation.R |only weird-2.1.0/weird/tests/testthat/test_kde_bandwidth.R |only weird-2.1.0/weird/tests/testthat/test_lof_glosh.R |only weird-2.1.0/weird/tests/testthat/test_mvscale.R |only weird-2.1.0/weird/tests/testthat/test_peirce.R |only weird-2.1.0/weird/tests/testthat/test_stray.R |only weird-2.1.0/weird/tests/testthat/test_surprisals_data.R |only weird-2.1.0/weird/tests/testthat/test_surprisals_models.R |only 78 files changed, 676 insertions(+), 319 deletions(-)
Title: Unified Interface for Machine Learning Models
Description: Provides a unified R6-based interface for various machine learning models with automatic interface detection, consistent cross-validation, model interpretations via numerical derivatives, and visualization. Supports both regression and classification tasks with any model function that follows R's standard modeling conventions (formula or matrix interface).
Author: T. Moudiki [aut, cre]
Maintainer: T. Moudiki <thierry.moudiki@gmail.com>
Diff between unifiedml versions 0.2.1 dated 2026-04-03 and 0.3.0 dated 2026-05-05
unifiedml-0.2.1/unifiedml/inst/doc/unifiedml-vignette.R |only unifiedml-0.2.1/unifiedml/inst/doc/unifiedml-vignette.Rmd |only unifiedml-0.2.1/unifiedml/inst/doc/unifiedml-vignette.html |only unifiedml-0.2.1/unifiedml/vignettes/unifiedml-vignette.Rmd |only unifiedml-0.3.0/unifiedml/DESCRIPTION | 10 unifiedml-0.3.0/unifiedml/MD5 | 44 + unifiedml-0.3.0/unifiedml/NAMESPACE | 6 unifiedml-0.3.0/unifiedml/NEWS.md | 25 unifiedml-0.3.0/unifiedml/R/benchmark.R |only unifiedml-0.3.0/unifiedml/R/cross_val_score.R | 273 +++++----- unifiedml-0.3.0/unifiedml/R/model.R | 39 + unifiedml-0.3.0/unifiedml/R/probs_classif.R |only unifiedml-0.3.0/unifiedml/R/train_test_split.R |only unifiedml-0.3.0/unifiedml/build/partial.rdb |binary unifiedml-0.3.0/unifiedml/build/vignette.rds |binary unifiedml-0.3.0/unifiedml/inst/doc/unifiedml-benchmark.R |only unifiedml-0.3.0/unifiedml/inst/doc/unifiedml-benchmark.Rmd |only unifiedml-0.3.0/unifiedml/inst/doc/unifiedml-benchmark.html |only unifiedml-0.3.0/unifiedml/inst/doc/unifiedml-caret.R |only unifiedml-0.3.0/unifiedml/inst/doc/unifiedml-caret.Rmd |only unifiedml-0.3.0/unifiedml/inst/doc/unifiedml-caret.html |only unifiedml-0.3.0/unifiedml/inst/doc/unifiedml-predict-proba.R |only unifiedml-0.3.0/unifiedml/inst/doc/unifiedml-predict-proba.Rmd |only unifiedml-0.3.0/unifiedml/inst/doc/unifiedml-predict-proba.html |only unifiedml-0.3.0/unifiedml/inst/doc/unifiedml.R |only unifiedml-0.3.0/unifiedml/inst/doc/unifiedml.Rmd |only unifiedml-0.3.0/unifiedml/inst/doc/unifiedml.html |only unifiedml-0.3.0/unifiedml/man/Model.Rd | 25 unifiedml-0.3.0/unifiedml/man/benchmark.Rd |only unifiedml-0.3.0/unifiedml/man/cross_val_score.Rd | 59 +- unifiedml-0.3.0/unifiedml/man/extract_probabilities.Rd |only unifiedml-0.3.0/unifiedml/man/train_test_split.Rd |only unifiedml-0.3.0/unifiedml/vignettes/unifiedml-benchmark.Rmd |only unifiedml-0.3.0/unifiedml/vignettes/unifiedml-caret.Rmd |only unifiedml-0.3.0/unifiedml/vignettes/unifiedml-predict-proba.Rmd |only unifiedml-0.3.0/unifiedml/vignettes/unifiedml.Rmd |only 36 files changed, 308 insertions(+), 173 deletions(-)
Title: Parametric Mortality Models, Life Tables and HMD
Description: Fit the most popular human mortality 'laws', and construct
full and abridge life tables given various input indices. A mortality
law is a parametric function that describes the dying-out process of
individuals in a population during a significant portion of their
life spans. For a comprehensive review of the most important mortality
laws see Tabeau (2001) <doi:10.1007/0-306-47562-6_1>.
Practical functions for downloading data from various human mortality
databases are provided as well.
Author: Marius D. Pascariu [aut, cre, cph] ,
Vladimir Canudas-Romo [ctb]
Maintainer: Marius D. Pascariu <mpascariu@outlook.com>
Diff between MortalityLaws versions 2.1.3 dated 2025-04-16 and 2.2.0 dated 2026-05-05
MortalityLaws-2.1.3/MortalityLaws/inst/doc/Installation.R |only MortalityLaws-2.1.3/MortalityLaws/inst/doc/Installation.Rmd |only MortalityLaws-2.1.3/MortalityLaws/inst/doc/Installation.pdf |only MortalityLaws-2.1.3/MortalityLaws/inst/doc/Intro.pdf |only MortalityLaws-2.1.3/MortalityLaws/vignettes/Installation.Rmd |only MortalityLaws-2.2.0/MortalityLaws/DESCRIPTION | 16 MortalityLaws-2.2.0/MortalityLaws/MD5 | 116 ++-- MortalityLaws-2.2.0/MortalityLaws/NAMESPACE | 2 MortalityLaws-2.2.0/MortalityLaws/R/LawTable.R | 154 +++-- MortalityLaws-2.2.0/MortalityLaws/R/LifeTable.R | 167 +++-- MortalityLaws-2.2.0/MortalityLaws/R/MortalityLaw_S3.R | 11 MortalityLaws-2.2.0/MortalityLaws/R/MortalityLaw_check.R | 15 MortalityLaws-2.2.0/MortalityLaws/R/MortalityLaw_main.R | 288 ++++++---- MortalityLaws-2.2.0/MortalityLaws/R/MortalityLaw_models.R | 13 MortalityLaws-2.2.0/MortalityLaws/R/MortalityLaws-data.R | 12 MortalityLaws-2.2.0/MortalityLaws/R/MortalityLaws-package.R | 9 MortalityLaws-2.2.0/MortalityLaws/R/availableHMD.R | 14 MortalityLaws-2.2.0/MortalityLaws/R/availableLF.R | 21 MortalityLaws-2.2.0/MortalityLaws/R/availableLaws.R | 16 MortalityLaws-2.2.0/MortalityLaws/R/convertFx.R | 89 ++- MortalityLaws-2.2.0/MortalityLaws/R/graphics.R | 16 MortalityLaws-2.2.0/MortalityLaws/R/readCHMD.R | 14 MortalityLaws-2.2.0/MortalityLaws/R/readHMD.R | 16 MortalityLaws-2.2.0/MortalityLaws/R/readJMD.R | 12 MortalityLaws-2.2.0/MortalityLaws/build/partial.rdb |binary MortalityLaws-2.2.0/MortalityLaws/build/vignette.rds |binary MortalityLaws-2.2.0/MortalityLaws/inst/doc/Installing-MortalityLaws.R |only MortalityLaws-2.2.0/MortalityLaws/inst/doc/Installing-MortalityLaws.Rmd |only MortalityLaws-2.2.0/MortalityLaws/inst/doc/Installing-MortalityLaws.html |only MortalityLaws-2.2.0/MortalityLaws/inst/doc/Intro.R | 93 +-- MortalityLaws-2.2.0/MortalityLaws/inst/doc/Intro.Rmd | 286 +++++---- MortalityLaws-2.2.0/MortalityLaws/inst/doc/Intro.html |only MortalityLaws-2.2.0/MortalityLaws/man/LawTable.Rd | 203 ++++--- MortalityLaws-2.2.0/MortalityLaws/man/LifeTable.Rd | 158 +++-- MortalityLaws-2.2.0/MortalityLaws/man/LifeTable.core.Rd | 75 +- MortalityLaws-2.2.0/MortalityLaws/man/MortalityLaw.Rd | 173 +++--- MortalityLaws-2.2.0/MortalityLaws/man/ReadAHMD.Rd | 2 MortalityLaws-2.2.0/MortalityLaws/man/ReadCHMD.Rd | 2 MortalityLaws-2.2.0/MortalityLaws/man/ReadHMD.Rd | 2 MortalityLaws-2.2.0/MortalityLaws/man/ReadHMD.core.Rd | 2 MortalityLaws-2.2.0/MortalityLaws/man/ReadJMD.Rd | 2 MortalityLaws-2.2.0/MortalityLaws/man/addDetails.Rd | 34 - MortalityLaws-2.2.0/MortalityLaws/man/ahmd.Rd | 4 MortalityLaws-2.2.0/MortalityLaws/man/availableHMD.Rd | 6 MortalityLaws-2.2.0/MortalityLaws/man/availableLF.Rd | 6 MortalityLaws-2.2.0/MortalityLaws/man/availableLaws.Rd | 9 MortalityLaws-2.2.0/MortalityLaws/man/bring_parameters.Rd | 5 MortalityLaws-2.2.0/MortalityLaws/man/check.MortalityLaw.Rd | 2 MortalityLaws-2.2.0/MortalityLaws/man/check_input_ReadCHMD.Rd | 36 - MortalityLaws-2.2.0/MortalityLaws/man/check_input_ReadJMD.Rd | 6 MortalityLaws-2.2.0/MortalityLaws/man/choose_optim.Rd | 25 MortalityLaws-2.2.0/MortalityLaws/man/coale.demeny.ax.Rd | 30 - MortalityLaws-2.2.0/MortalityLaws/man/compute.ax.Rd | 12 MortalityLaws-2.2.0/MortalityLaws/man/convertFx.Rd | 88 ++- MortalityLaws-2.2.0/MortalityLaws/man/find.my.case.Rd | 26 MortalityLaws-2.2.0/MortalityLaws/man/logLik.MortalityLaw.Rd | 2 MortalityLaws-2.2.0/MortalityLaws/man/mx_qx.Rd | 5 MortalityLaws-2.2.0/MortalityLaws/man/objective_fun.Rd | 77 +- MortalityLaws-2.2.0/MortalityLaws/man/plot.MortalityLaw.Rd | 10 MortalityLaws-2.2.0/MortalityLaws/man/scale_x.Rd | 11 MortalityLaws-2.2.0/MortalityLaws/man/uxAbove100.Rd | 5 MortalityLaws-2.2.0/MortalityLaws/vignettes/Installing-MortalityLaws.Rmd |only MortalityLaws-2.2.0/MortalityLaws/vignettes/Intro.Rmd | 286 +++++---- MortalityLaws-2.2.0/MortalityLaws/vignettes/Mlaw_Refrences.bib | 2 64 files changed, 1630 insertions(+), 1056 deletions(-)
Title: Functional Data Sets
Description: Functional data sets.
Author: Han Lin Shang [aut, cre, cph] ,
Rob Hyndman [aut]
Maintainer: Han Lin Shang <hanlin.shang@mq.edu.au>
Diff between fds versions 1.8 dated 2018-10-31 and 1.9 dated 2026-05-05
CHANGELOG | 5 +++++ DESCRIPTION | 19 +++++++++++++------ MD5 | 36 ++++++++++++++++++++---------------- NAMESPACE | 3 --- R/read.jpn.R |only R/read.jpn_death.R |only man/Cancerrate.Rd | 2 +- man/ECBYieldcurve.Rd | 2 +- man/Electricityconsumption.Rd | 4 ++-- man/Fat.Rd | 4 ++-- man/FedYieldcurve.Rd | 4 +--- man/Phoneme.Rd | 4 ++-- man/SOI.Rd | 2 +- man/Satellite.Rd | 2 +- man/Spanishmigration.Rd | 2 +- man/Yieldcurve.Rd | 2 +- man/hmdcountry.Rd | 2 +- man/hmdstatistic.Rd | 2 +- man/read.hmd.Rd | 2 +- man/read.jpn.Rd |only man/read.jpn_death.Rd |only 21 files changed, 54 insertions(+), 43 deletions(-)
Title: Easily Extracting Information About Your Data
Description: Makes it easy to display descriptive information on a data
set. Getting an easy overview of a data set by displaying and
visualizing sample information in different tables (e.g., time and
scope conditions). The package also provides publishable 'LaTeX' code
to present the sample information.
Author: Cosima Meyer [cre, aut],
Dennis Hammerschmidt [aut]
Maintainer: Cosima Meyer <cosima.meyer@gmail.com>
Diff between overviewR versions 0.0.13 dated 2023-02-15 and 0.0.14 dated 2026-05-05
DESCRIPTION | 12 MD5 | 36 +- NAMESPACE | 2 NEWS.md | 24 + R/overview_markdown.R |only R/overview_na.R | 22 + R/overview_overlap.R | 38 ++ R/overview_plot.R | 202 ++++++++----- README.md | 42 ++ build/vignette.rds |binary inst/doc/getting-started.R | 10 inst/doc/getting-started.html | 20 - inst/doc/overviewR_vignette.R | 347 +++++++++++++--------- inst/doc/overviewR_vignette.Rmd | 164 +++++++++- inst/doc/overviewR_vignette.html | 573 ++++++++++++++++++++++--------------- man/overview_markdown.Rd |only man/overview_overlap.Rd | 12 man/overview_plot.Rd | 7 tests/testthat/test-check_output.R | 87 +++++ vignettes/overviewR_vignette.Rmd | 164 +++++++++- 20 files changed, 1265 insertions(+), 497 deletions(-)
Title: Embedding 'exams' Exercises as Forms in 'rmarkdown' or 'quarto'
Documents
Description: Automatic generation of quizzes or individual questions as (interactive) forms within 'rmarkdown' or 'quarto' documents based on 'R/exams' exercises.
Author: Achim Zeileis [aut, cre] ,
Reto Stauffer [aut] ,
Dale Barr [ctb] ,
Lisa DeBruine [ctb] ,
Florian Stampfer [ctb] ,
Jonas Tscholl [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams2forms versions 0.2-0 dated 2025-05-02 and 0.2-1 dated 2026-05-05
exams2forms-0.2-0/exams2forms/inst/forms/questions.html |only exams2forms-0.2-0/exams2forms/inst/forms/quiz.html |only exams2forms-0.2-1/exams2forms/DESCRIPTION | 8 exams2forms-0.2-1/exams2forms/MD5 | 18 - exams2forms-0.2-1/exams2forms/NEWS.md | 13 + exams2forms-0.2-1/exams2forms/R/exams2forms.R | 2 exams2forms-0.2-1/exams2forms/build/vignette.rds |binary exams2forms-0.2-1/exams2forms/inst/doc/exams2forms.html | 169 ++++++++-------- exams2forms-0.2-1/exams2forms/inst/webex/webex.css | 1 exams2forms-0.2-1/exams2forms/inst/webex/webex.js | 44 ++-- exams2forms-0.2-1/exams2forms/man/exams2forms.Rd | 4 11 files changed, 151 insertions(+), 108 deletions(-)
Title: Biometric Exploratory Analysis Creation House
Description: A platform for interactive data analysis designed to simplify development, deployment, interaction, and exploration (TEDDIE). The package enables users to create customized analyses and deploy them to end users, who can perform interactive analyses and export results to RTF or HTML files. It allows developers to focus on R code for analysis rather than managing HTML or Shiny application code.
Author: Danni Yu [aut, cre],
Michael Man [aut],
ChenChen Yu [ctb]
Maintainer: Danni Yu <danni.yu@gmail.com>
Diff between BEACH versions 1.3.1 dated 2019-02-11 and 1.3.2 dated 2026-05-05
BEACH-1.3.1/BEACH/R/runBEACH.R |only BEACH-1.3.1/BEACH/build |only BEACH-1.3.1/BEACH/inst |only BEACH-1.3.1/BEACH/man |only BEACH-1.3.2/BEACH/DESCRIPTION | 26 +++++-------- BEACH-1.3.2/BEACH/LICENSE |only BEACH-1.3.2/BEACH/MD5 | 81 +++++++++++++++++++++++++---------------- BEACH-1.3.2/BEACH/NAMESPACE | 12 +----- BEACH-1.3.2/BEACH/R/inst |only BEACH-1.3.2/BEACH/R/run_app.R |only BEACH-1.3.2/BEACH/README.md |only 11 files changed, 63 insertions(+), 56 deletions(-)
Title: Recursive Non-Additive Emulator for Multi-Fidelity Data
Description: Performs RNA emulation and active learning proposed by Heo and Sung (2025) <doi:10.1080/00401706.2024.2376173> for multi-fidelity computer experiments. The RNA emulator is particularly useful when the simulations with different fidelity level are nonlinearly correlated. The hyperparameters in the model are estimated by maximum likelihood estimation.
Author: Junoh Heo [aut, cre],
Chih-Li Sung [aut]
Maintainer: Junoh Heo <heojunoh@msu.edu>
Diff between RNAmf versions 1.1.3 dated 2026-01-29 and 1.1.4 dated 2026-05-05
DESCRIPTION | 8 +- MD5 | 10 +-- NAMESPACE | 12 +--- R/AL_RNAmf.R | 16 ++--- R/RNAmf.R | 163 +++++++++++++++++++++++++++++++++++++++-------------------- man/RNAmf.Rd | 2 6 files changed, 130 insertions(+), 81 deletions(-)
Title: Running Local LLMs with 'llama.cpp' Backend
Description: Provides R bindings to the 'llama.cpp' library for running large language models.
The package uses a lightweight architecture where the C++ backend library is downloaded
at runtime rather than bundled with the package.
Package features include text generation, reproducible generation, and parallel inference.
Author: Eddie Yang [aut] ,
Yaosheng Xu [aut, cre]
Maintainer: Yaosheng Xu <xu2009@purdue.edu>
Diff between localLLM versions 1.2.1 dated 2026-02-26 and 1.3.0 dated 2026-05-05
DESCRIPTION | 10 - MD5 | 91 ++++++------ NEWS.md | 95 ++++++++++++ R/annotations.R | 4 R/api.R | 150 +++++++++++++++----- R/documentation.R | 4 R/gemma_chat_template.R | 8 - R/install.R | 138 +++++++++++++++--- R/quick_llama.R | 53 +++---- R/zzz.R | 4 inst/doc/faq.R | 19 ++ inst/doc/faq.Rmd | 53 +++++-- inst/doc/faq.html | 168 +++++++++++++++------- inst/doc/get-started.R | 10 + inst/doc/get-started.Rmd | 22 ++ inst/doc/get-started.html | 62 ++++++-- inst/doc/tutorial-basic-generation.R | 16 ++ inst/doc/tutorial-basic-generation.Rmd | 41 +++++ inst/doc/tutorial-basic-generation.html | 105 ++++++++++++-- inst/doc/tutorial-model-comparison.R | 14 + inst/doc/tutorial-model-comparison.Rmd | 18 +- inst/doc/tutorial-model-comparison.html | 102 +++++++------ inst/doc/tutorial-parallel-processing.R | 8 - inst/doc/tutorial-parallel-processing.Rmd | 51 +++++- inst/doc/tutorial-parallel-processing.html | 216 +++++++++++++++++++---------- man/apply_chat_template.Rd | 3 man/document_start.Rd | 4 man/explore.Rd | 4 man/generate.Rd | 20 ++ man/generate_parallel.Rd | 27 +++ man/install_localLLM.Rd | 24 ++- man/localLLM-package.Rd | 4 man/model_load.Rd | 10 + man/model_metadata.Rd |only man/quick_llama.Rd | 12 - man/quick_llama_reset.Rd | 4 man/smart_chat_template.Rd | 9 - src/init.cpp | 14 + src/interface.cpp | 89 ++++++++--- src/localllm_capi.h | 8 - src/proxy.cpp | 8 - src/proxy.h | 6 vignettes/faq.Rmd | 53 +++++-- vignettes/get-started.Rmd | 22 ++ vignettes/tutorial-basic-generation.Rmd | 41 +++++ vignettes/tutorial-model-comparison.Rmd | 18 +- vignettes/tutorial-parallel-processing.Rmd | 51 +++++- 47 files changed, 1432 insertions(+), 461 deletions(-)
Title: A Unified and Longitudinally Aware Framework for ICD-Based
Comorbidity Assessment
Description: Provides comorbidity classification algorithms such as the
Pediatric Complex Chronic Conditions (PCCC), Charlson, and Elixhauser indices,
supports longitudinal comorbidity flagging across encounters, and includes
utilities for working with medical coding schemas such as the International
Classification of Diseases (ICD).
Author: Peter DeWitt [aut, cre, cov] ,
Tell Bennett [ctb] ,
Seth Russell [ctb] ,
Meg Rebull [ctb] ,
Vincent Rubinetti [cov]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>
Diff between medicalcoder versions 0.8.0 dated 2026-02-22 and 0.8.1 dated 2026-05-05
DESCRIPTION | 8 MD5 | 54 +-- NEWS.md | 14 R/comorbidities.R | 20 + R/lookup_icd_codes.R | 32 +- R/summary.R | 17 - R/sysdata.rda |binary R/utilities.R | 2 README.md | 13 build/vignette.rds |binary data/mdcr.rda |binary data/mdcr_longitudinal.rda |binary inst/doc/charlson.html | 14 inst/doc/comorbidities.html | 14 inst/doc/elixhauser.html | 2 inst/doc/icd.html | 662 +++++++++++++++++++++--------------------- inst/doc/pccc.html | 42 +- man/icd_compact_to_full.Rd | 6 man/is_icd.Rd | 6 man/lookup_icd_codes.Rd | 6 man/mdcr.Rd | 2 man/mdcr_longitudinal.Rd | 2 man/medicalcoder-package.Rd | 5 tests/results_pccc_1.0.7.rds |binary tests/test-comorbidities.R | 61 +++ tests/test-lookup_icd_codes.R | 12 tests/test-pccc-deltas.R | 4 tests/test-summary-charlson.R | 38 ++ 28 files changed, 604 insertions(+), 432 deletions(-)