Title: Likelihood Based Inference
Description: Maximum likelihood estimation and likelihood ratio test are essential for modern statistics. This package supports in calculating likelihood based inference.
Reference: Pawitan Y. (2001, ISBN:0-19-850765-8).
Author: Kyun-Seop Bae [aut, cre, cph]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between LBI versions 0.2.3 dated 2025-08-21 and 0.2.4 dated 2026-05-22
LBI-0.2.3/LBI/inst/doc |only LBI-0.2.4/LBI/DESCRIPTION | 6 +++--- LBI-0.2.4/LBI/MD5 | 7 +++---- LBI-0.2.4/LBI/R/LIvRatio.R | 4 ++-- LBI-0.2.4/LBI/inst/NEWS.Rd | 6 ++++++ 5 files changed, 14 insertions(+), 9 deletions(-)
Title: Multi-Stock Assessment
Description: Implementation of a next-generation, multi-stock age-structured fisheries assessment model.
'multiSA' is intended for use in mixed fisheries where stock composition can not be readily identified in
fishery data alone, e.g., from catch and age/length composition. Models can be fitted to genetic data,
e.g., stock composition of catches and close-kin pairs, with seasonal stock availability and movement.
Author: Quang Huynh [aut, cre]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between multiSA versions 0.1.1 dated 2026-03-20 and 0.2.0 dated 2026-05-22
DESCRIPTION | 8 MD5 | 57 - NAMESPACE | 1 NEWS.md | 10 R/calc_population.R | 807 ++++++++++-------- R/check-data.R | 1406 ++++++++++++++++---------------- R/like.R | 319 ++++--- R/make-parameters.R | 1704 +++++++++++++++++++------------------- R/misc.R | 879 ++++++++++---------- R/model.R | 174 ++- R/model_int.R | 38 R/report-int-data.R | 315 +++++-- R/report-int-state.R | 1924 +++++++++++++++++++++++--------------------- R/report-rmd.R | 762 ++++++++--------- R/resid.R | 26 R/rtmb-methods.R | 252 ++--- R/selectivity.R | 472 ++++++---- R/simulate.R | 50 - build/partial.rdb |binary inst/include/MSAreport.Rmd | 206 ++-- man/calc_eqdist.Rd | 70 - man/calc_init_population.Rd |only man/calc_phi_project.Rd | 2 man/calc_population.Rd | 2 man/conv_selpar.Rd | 26 man/fit_MSA.Rd | 4 man/like_comp.Rd | 4 man/make_parameters.Rd | 12 man/plot-MSA-data.Rd | 27 man/plot-MSA-state.Rd | 41 30 files changed, 5083 insertions(+), 4515 deletions(-)
Title: Species Distribution Modeling with H3 Grids
Description: Provides tools for species distribution modeling using H3
hexagonal grids (Uber Technologies Inc., 2022, <https://h3geo.org>).
Facilitates retrieval of species occurrence records, generation of H3 grids,
computation of landscape metrics, and preparation of spatial data for modern
species distribution models workflows. Designed for biodiversity and landscape ecology research.
Author: Manuel Spinola [aut, cre]
Maintainer: Manuel Spinola <mspinola10@gmail.com>
Diff between h3sdm versions 0.1.1 dated 2026-05-13 and 0.1.2 dated 2026-05-22
DESCRIPTION | 8 - MD5 | 24 ++--- NAMESPACE | 3 NEWS.md | 16 +++ R/h3sdm_fit_model.R | 26 ++++-- R/h3sdm_get_records.R | 193 +++++++++++++++++++++++++++++++++-------------- R/h3sdm_pa.R | 6 + R/h3sdm_predict.R | 28 ++++-- inst/doc/h3sdm.html | 32 +++---- man/h3sdm_fit_model.Rd | 13 +-- man/h3sdm_get_records.Rd | 73 ++++++++++------- man/h3sdm_pa.Rd | 6 + man/h3sdm_predict.Rd | 8 + 13 files changed, 294 insertions(+), 142 deletions(-)
Title: Sex- and Age-Standardized Metrics from the Centers for Disease
Control and Prevention (CDC) Growth Charts
Description: Calculation of sex- and age-standardized growth metrics
based on the 2000 CDC growth charts. Provides functions to generate
z-scores and percentiles for weight, height, and body mass index (BMI)
using the LMS method (lambda-mu-sigma). Includes extended BMI z-scores
for values above the 95th percentile to more accurately characterize
the sex- and age-standardized BMI of children with very high BMIs.
Author: David Freedman [aut, cre]
Maintainer: David Freedman <DavidSFreedman@gmail.com>
Diff between cdcanthro versions 0.1.0 dated 2026-03-17 and 0.2.0 dated 2026-05-22
DESCRIPTION | 27 +- MD5 | 9 NAMESPACE | 5 NEWS.md |only R/cdcanthro.R | 501 ++++++++++++++++++++++++++++++++----------------------- man/cdcanthro.Rd | 222 +++++++++++++----------- 6 files changed, 448 insertions(+), 316 deletions(-)
Title: End-to-End Automated Machine Learning and Model Evaluation
Description: Single unified interface for end-to-end modelling of regression,
categorical and time-to-event (survival) outcomes. Models created using
familiar are self-containing, and their use does not require additional
information such as baseline survival, feature clustering, or feature
transformation and normalisation parameters. Model performance,
calibration, risk group stratification, (permutation) variable importance,
individual conditional expectation, partial dependence, and more, are
assessed automatically as part of the evaluation process and exported in
tabular format and plotted, and may also be computed manually using export
and plot functions. Where possible, metrics and values obtained during the
evaluation process come with confidence intervals.
Author: Alex Zwanenburg [aut, cre] ,
Steffen Loeck [aut],
German Cancer Research Center [cph],
Technische Universitaet Dresden [cph]
Maintainer: Alex Zwanenburg <alexander.zwanenburg@nct-dresden.de>
Diff between familiar versions 2.0.0 dated 2026-04-23 and 2.0.1 dated 2026-05-22
DESCRIPTION | 8 MD5 | 160 ++++++------ NAMESPACE | 1 NEWS.md | 32 ++ R/DataObject.R | 5 R/DataParameterChecks.R | 15 + R/Familiar.R | 6 R/FamiliarDataComputation.R | 12 R/FamiliarDataComputationFeatureExpression.R | 34 ++ R/FamiliarDataComputationFeatureSimilarity.R | 43 +++ R/FamiliarDataComputationICE.R | 2 R/FamiliarDataComputationRiskStratificationData.R | 14 - R/FamiliarDataComputationSHAP.R | 2 R/FamiliarDataComputationSampleSimilarity.R | 29 +- R/FamiliarDataComputationUtilities.R | 64 +++- R/FamiliarObjectConversion.R | 1 R/PlotFeatureSimilarity.R | 26 +- R/PlotICE.R | 2 R/PlotKaplanMeier.R | 18 + R/PlotSampleClustering.R | 45 +++ build/vignette.rds |binary man/as_familiar_collection-methods.Rd | 5 man/as_familiar_data-methods.Rd | 5 man/dot-extract_data.Rd | 5 man/dot-parse_general_settings.Rd | 2 man/dot-parse_initial_settings.Rd | 2 man/export_all-methods.Rd | 5 man/export_auc_data-methods.Rd | 2 man/export_calibration_data-methods.Rd | 2 man/export_calibration_info-methods.Rd | 150 +++++------ man/export_confusion_matrix_data-methods.Rd | 2 man/export_decision_curve_analysis_data-methods.Rd | 138 +++++----- man/export_feature_expressions-methods.Rd | 137 ++++++++++ man/export_feature_similarity-methods.Rd | 138 ++++++++++ man/export_fs_vimp-methods.Rd | 256 +++++++++---------- man/export_hyperparameters-methods.Rd | 154 +++++------ man/export_ice_data-methods.Rd | 2 man/export_model_performance-methods.Rd | 2 man/export_model_vimp-methods.Rd | 260 ++++++++++---------- man/export_partial_dependence_data-methods.Rd | 2 man/export_permutation_vimp-methods.Rd | 2 man/export_prediction_data-methods.Rd | 2 man/export_risk_stratification_data-methods.Rd | 5 man/export_risk_stratification_info-methods.Rd | 189 +++++++------- man/export_sample_similarity-methods.Rd | 131 ++++++++++ man/export_shap-methods.Rd | 2 man/export_univariate_analysis_data-methods.Rd | 2 man/extract_feature_similarity.Rd | 3 man/extract_risk_stratification_data.Rd | 3 man/extract_risk_stratification_info.Rd | 3 man/extract_sample_similarity.Rd | 5 man/familiar.Rd | 1 man/plot_auc_precision_recall_curve-methods.Rd | 2 man/plot_auc_roc_curve-methods.Rd | 2 man/plot_calibration_data-methods.Rd | 2 man/plot_confusion_matrix-methods.Rd | 2 man/plot_decision_curve-methods.Rd | 2 man/plot_feature_similarity-methods.Rd | 15 + man/plot_ice-methods.Rd | 2 man/plot_kaplan_meier-methods.Rd | 2 man/plot_model_performance-methods.Rd | 2 man/plot_pd-methods.Rd | 2 man/plot_permutation_variable_importance-methods.Rd | 2 man/plot_sample_clustering-methods.Rd | 21 + man/plot_shap_dependence-methods.Rd | 2 man/plot_shap_force-methods.Rd | 2 man/plot_shap_summary-methods.Rd | 2 man/plot_shap_waterfall-methods.Rd | 2 man/plot_univariate_importance-methods.Rd | 2 man/plot_variable_importance-methods.Rd | 2 man/precompute_data_assignment.Rd | 2 man/precompute_feature_info.Rd | 2 man/precompute_vimp.Rd | 2 man/summon_familiar.Rd | 2 man/train_familiar.Rd | 2 tests/testthat.R | 9 tests/testthat/test-experimental_design.R | 151 +++++------ tests/testthat/test-experimental_design_imbalance.R |only tests/testthat/test-experimental_design_loocv.R |only tests/testthat/test-plot_feature_similarity.R | 37 ++ tests/testthat/test-plot_kaplan_meier_curve.R | 22 + tests/testthat/test-plot_sample_clustering_b.R | 47 +++ 82 files changed, 1653 insertions(+), 827 deletions(-)
Title: Access the 'CDC PLACES' API
Description: Allows users to seamlessly query several 'CDC PLACES' APIs (<https://data.cdc.gov/browse?q=PLACES%20&sortBy=relevance>)
by geography, state, measure, and release year. This package also contains a
function to explore the available measures for each release year.
Author: Brenden Smith [aut, cre]
Maintainer: Brenden Smith <smit2535@msu.edu>
Diff between CDCPLACES versions 1.2.0 dated 2026-02-12 and 1.2.1 dated 2026-05-22
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 15 +++++++++++++++ R/get_places.R | 24 +++++++++++++++++++++--- R/sysdata.rda |binary README.md | 2 +- tests/testthat/test-get_places.R | 4 ++-- tests/testthat/test-helpers.R | 7 ------- 8 files changed, 49 insertions(+), 23 deletions(-)
Title: Reliability Growth Analysis and Repairable Systems Modeling
Description: Modeling and plotting functions for Reliability Growth Analysis (RGA) and Non-Homogeneous Poisson Process (NHPP) models for repairable systems. RGA models include the Duane (1962) <doi:10.1109/TA.1964.4319640>, NHPP by Crow (1975) (No. AMSAATR138), Piecewise Weibull NHPP by Guo et al. (2010) <doi:10.1109/RAMS.2010.5448029>, and Piecewise Weibull NHPP with Change Point Detection based on the 'segmented' package by Muggeo (2024) <https://cran.r-project.org/package=segmented>. Repairable systems functions include the Mean Cumulative Function (MCF) using the Nelson-Aalen estimator, parametric Power Law and Log-Linear NHPP models, and forecasting.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaGrowR versions 0.6 dated 2026-04-16 and 0.7 dated 2026-05-22
DESCRIPTION | 10 - MD5 | 60 ++++-- NAMESPACE | 9 NEWS.md | 16 + R/duane.R | 295 ++++++++++++++++++++++++++++--- R/gof.R | 118 ++++++++++++ R/mcp.R |only R/nhpp.R | 82 ++++++-- README.md | 38 +++ build/vignette.rds |binary inst/doc/MCP.R |only inst/doc/MCP.Rmd |only inst/doc/MCP.html |only inst/doc/RDT.R |only inst/doc/RDT.Rmd |only inst/doc/RDT.html |only inst/doc/RSA.R | 42 +--- inst/doc/RSA.Rmd | 62 +++--- inst/doc/RSA.html | 88 +++++---- inst/mcp |only man/duane.Rd | 17 + man/figures/README-forecast-1.png |only man/figures/README-unnamed-chunk-6-1.png |only man/gof.Rd |only man/mcp.Rd |only man/plot.duane.Rd | 19 + man/plot.duane_predict.Rd |only man/ppplot.rga.Rd | 2 man/predict_duane.Rd |only man/print.duane.Rd | 5 man/print.duane_predict.Rd |only man/print.gof.Rd |only man/qqplot.rga.Rd | 4 man/rga_mcp_server.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test-srr-duane.R | 162 ++++++++++++++--- tests/testthat/test-srr-gof.R | 54 +++++ tests/testthat/test-srr-mcp.R |only vignettes/MCP.Rmd |only vignettes/RDT.Rmd |only vignettes/RSA.Rmd | 62 +++--- 41 files changed, 916 insertions(+), 229 deletions(-)
Title: Sparse Principal Component Analysis with Multiple Principal
Components
Description: Implements an algorithm for computing multiple sparse principal
components of a dataset. The method is based on Cory-Wright and Pauphilet
"Sparse PCA with Multiple Principal Components" (2026)
<doi:10.48550/arXiv.2209.14790>. The algorithm uses an iterative deflation
heuristic with a truncated power method applied at each iteration to compute
sparse principal components with controlled sparsity.
Author: Ryan Cory-Wright [aut, cph] ,
Jean Pauphilet [aut, cre, cph]
Maintainer: Jean Pauphilet <jpauphilet@london.edu>
Diff between msPCA versions 0.3.0 dated 2026-05-15 and 0.4.0 dated 2026-05-22
msPCA-0.3.0/msPCA/man/orthogonality_violation.Rd |only msPCA-0.3.0/msPCA/man/pairwise_correlation.Rd |only msPCA-0.4.0/msPCA/DESCRIPTION | 10 ++-- msPCA-0.4.0/msPCA/MD5 | 21 ++++----- msPCA-0.4.0/msPCA/NAMESPACE | 6 +- msPCA-0.4.0/msPCA/NEWS.md | 8 +++ msPCA-0.4.0/msPCA/R/RcppExports.R | 4 - msPCA-0.4.0/msPCA/R/main.R | 44 ++++++++------------ msPCA-0.4.0/msPCA/man/feasibility_violation_off.Rd |only msPCA-0.4.0/msPCA/man/mspca.Rd | 18 ++++---- msPCA-0.4.0/msPCA/man/print_mspca.Rd | 2 msPCA-0.4.0/msPCA/src/RcppExports.cpp | 14 +++--- msPCA-0.4.0/msPCA/src/msPCA_R_CPP.cpp | 45 +++++++++++++-------- 13 files changed, 91 insertions(+), 81 deletions(-)
Title: RFSI & STRK Interpolation for Meteo and Environmental Variables
Description: Random Forest Spatial Interpolation (RFSI, Sekulić et al. (2020) <doi:10.3390/rs12101687>) and spatio-temporal geostatistical (spatio-temporal regression Kriging (STRK)) interpolation for meteorological (Kilibarda et al. (2014) <doi:10.1002/2013JD020803>, Sekulić et al. (2020) <doi:10.1007/s00704-019-03077-3>) and other environmental variables. Contains global spatio-temporal models calculated using publicly available data.
Author: Milan Kilibarda [aut] ,
Aleksandar Sekulic [aut, cre] ,
Tomislav Hengl [ctb],
Edzer Pebesma [ctb],
Benedikt Graeler [ctb]
Maintainer: Aleksandar Sekulic <asekulic@grf.bg.ac.rs>
Diff between meteo versions 2.0-4 dated 2026-03-24 and 2.0-5 dated 2026-05-22
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/near.obs.R | 41 +++++++++++++++++++++++++++++++++++++---- R/near.obs.batimetry.R | 16 ++++++++++------ man/dprec.Rd | 2 +- man/dslp.Rd | 2 +- man/dsndp.Rd | 2 +- man/dtemp_maxc.Rd | 2 +- man/dtemp_minc.Rd | 2 +- man/dtempc.Rd | 2 +- man/dwdsp.Rd | 2 +- man/stations.Rd | 2 +- 12 files changed, 70 insertions(+), 33 deletions(-)
Title: Assertion and Message Functions
Description: Enhanced message functions (cat() / message() / warning() / error())
using wrappers around sprintf(). Also, multiple assertion functions
(e.g. to check class, length, values, files, arguments, etc.).
Author: Florian Prive [aut, cre]
Maintainer: Florian Prive <florian.prive.21@gmail.com>
Diff between bigassertr versions 0.1.7 dated 2025-06-27 and 0.2.0 dated 2026-05-22
DESCRIPTION | 10 +++---- MD5 | 8 ++--- R/assert.R | 59 +++++++++++++++++++++--------------------- R/message.R | 81 ++++++++++++++++++++++++++++++++++------------------------ man/printf.Rd | 8 ++++- 5 files changed, 93 insertions(+), 73 deletions(-)
Title: A Unified Time Series Event Detection Framework
Description: By analyzing time series, it is possible to observe significant changes in the behavior of observations that frequently characterize events. Events present themselves as anomalies, change points, or motifs. In the literature, there are several methods for detecting events. However, searching for a suitable time series method is a complex task, especially considering that the nature of events is often unknown. This work presents Harbinger, a framework for integrating and analyzing event detection methods. Harbinger contains several state-of-the-art methods described in Salles et al. (2020) <doi:10.5753/sbbd.2020.13626>.
Author: Eduardo Ogasawara [aut, ths, cre] ,
Anthony Heimlich [aut],
Antonio Castro [aut],
Antonio Mello [aut],
Diego Carvalho [ctb],
Eduardo Bezerra [ctb],
Ellen Paixao [aut],
Fernando Fraga [aut],
Gabriel Giuliano [aut],
Heraldo Borges [aut],
Igor Andrade [ [...truncated...]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between harbinger versions 2.0.747 dated 2026-05-14 and 2.0.757 dated 2026-05-22
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/hanr_ml.R | 12 ++++++++++-- R/hanr_remd.R | 16 ++++++++++------ R/hcp_waypoint.R | 6 ++---- man/hanr_ml.Rd | 5 +++++ man/hanr_remd.Rd | 3 +++ 7 files changed, 39 insertions(+), 21 deletions(-)
Title: Deep Python Extensions for 'daltoolbox'
Description: Extends 'daltoolbox' with Python-backed components for deep learning,
scikit-learn classification, and time-series forecasting through
'reticulate'. The package provides objects that follow the 'daltoolbox'
architecture while delegating model creation, fitting, encoding, and
prediction to Python libraries such as 'torch' and 'scikit-learn'. In the
package name, 'dp' stands for 'Deep Python'. The overall workflow is
inspired by the Experiment Lines approach described in Ogasawara et al.
(2009) <doi:10.1007/978-3-642-02279-1_20>.
Author: Eduardo Ogasawara [aut, ths, cre] ,
Diego Salles [aut],
Erich Carvalho [aut],
Janio Lima [aut],
Joao Kongevold [aut],
Lucas Tavares [aut],
Eduardo Bezerra [ctb],
CEFET/RJ [cph]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between daltoolboxdp versions 1.3.737 dated 2026-05-14 and 1.3.747 dated 2026-05-22
DESCRIPTION | 6 ++--- MD5 | 18 ++++++++-------- R/torch_reg_mlp.R | 55 ++++++++++++++++++++++++++++++++++++++++++--------- R/torch_ts_mlp.R | 18 +++++++++++++--- R/ts_conv1d.R | 18 +++++++++++++--- R/ts_lstm.R | 18 +++++++++++++--- man/torch_reg_mlp.Rd | 6 ++--- man/torch_ts_mlp.Rd | 11 ++++++++++ man/ts_conv1d.Rd | 10 +++++++++ man/ts_lstm.Rd | 10 +++++++++ 10 files changed, 137 insertions(+), 33 deletions(-)
Title: Time Series Prediction with Integrated Tuning
Description: Time series prediction is a critical task in data analysis, requiring not only the selection of appropriate models, but also suitable data preprocessing and tuning strategies.
TSPredIT (Time Series Prediction with Integrated Tuning) is a framework that provides a seamless integration of data preprocessing, decomposition, model training, hyperparameter optimization, and evaluation.
Unlike other frameworks, TSPredIT emphasizes the co-optimization of both preprocessing and modeling steps, improving predictive performance.
It supports a variety of statistical and machine learning models, filtering techniques, outlier detection, data augmentation, and ensemble strategies.
More information is available in Salles et al. <doi:10.1007/978-3-662-68014-8_2>.
Author: Eduardo Ogasawara [aut, ths, cre] ,
Cristiane Gea [aut],
Diego Carvalho [ctb],
Diogo Santos [aut],
Arthur Garcia [aut],
Eduardo Bezerra [ctb],
Esther Pacitti [ctb],
Fabio Porto [ctb],
Fernando Alexandrino [aut],
Rebecca Salles [aut],
Vitoria Birindib [...truncated...]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between tspredit versions 1.3.707 dated 2026-05-14 and 2.0.707 dated 2026-05-22
DESCRIPTION | 9 +- MD5 | 198 +++++++++++++++++++++++++--------------------- NAMESPACE | 31 +++++++ R/ts_arima.R | 10 +- R/ts_arimax.R |only R/ts_aug_awareness.R | 2 R/ts_aug_awaresmooth.R | 2 R/ts_aug_flip.R | 2 R/ts_aug_jitter.R | 2 R/ts_aug_none.R | 2 R/ts_aug_shrink.R | 2 R/ts_aug_stretch.R | 2 R/ts_aug_wormhole.R | 2 R/ts_darima.R |only R/ts_data.R | 15 ++- R/ts_data_mv.R |only R/ts_deterministic.R |only R/ts_elm.R | 8 + R/ts_fil_ema.R | 2 R/ts_fil_emd.R | 2 R/ts_fil_fft.R | 2 R/ts_fil_hp.R | 2 R/ts_fil_kalman.R | 2 R/ts_fil_lowess.R | 2 R/ts_fil_ma.R | 2 R/ts_fil_none.R | 2 R/ts_fil_qes.R | 2 R/ts_fil_recursive.R | 2 R/ts_fil_remd.R | 2 R/ts_fil_seas_adj.R | 2 R/ts_fil_ses.R | 2 R/ts_fil_smooth.R | 2 R/ts_fil_spline.R | 2 R/ts_fil_wavelet.R | 2 R/ts_fil_winsor.R | 2 R/ts_integtune.R | 4 R/ts_knn.R | 4 R/ts_lagmap.R | 7 + R/ts_lm_mv.R |only R/ts_mlp.R | 4 R/ts_norm_an.R | 21 +++- R/ts_norm_diff.R | 7 + R/ts_norm_gminmax.R | 2 R/ts_norm_none.R | 2 R/ts_norm_swminmax.R | 2 R/ts_plot_mv.R |only R/ts_reg_mv.R |only R/ts_regsw.R | 18 +++- R/ts_regsw_mv.R |only R/ts_rf.R | 4 R/ts_sample.R | 18 +++- R/ts_svm.R | 4 R/ts_tune.R | 4 R/ts_var.R |only R/ts_warma.R |only README.md | 36 ++++++++ man/adjust_ts_data_mv.Rd |only man/plot_ts_pred_mv.Rd |only man/ts_arima.Rd | 8 - man/ts_arimax.Rd |only man/ts_aug_awareness.Rd | 2 man/ts_aug_awaresmooth.Rd | 2 man/ts_aug_flip.Rd | 2 man/ts_aug_jitter.Rd | 2 man/ts_aug_none.Rd | 2 man/ts_aug_shrink.Rd | 2 man/ts_aug_stretch.Rd | 2 man/ts_aug_wormhole.Rd | 2 man/ts_darima.Rd |only man/ts_data.Rd | 7 - man/ts_data_mv.Rd |only man/ts_deterministic.Rd |only man/ts_elm.Rd | 4 man/ts_fil_ema.Rd | 2 man/ts_fil_emd.Rd | 2 man/ts_fil_fft.Rd | 2 man/ts_fil_hp.Rd | 2 man/ts_fil_kalman.Rd | 2 man/ts_fil_lowess.Rd | 2 man/ts_fil_ma.Rd | 2 man/ts_fil_none.Rd | 2 man/ts_fil_qes.Rd | 2 man/ts_fil_recursive.Rd | 2 man/ts_fil_remd.Rd | 2 man/ts_fil_seas_adj.Rd | 2 man/ts_fil_ses.Rd | 2 man/ts_fil_smooth.Rd | 2 man/ts_fil_spline.Rd | 2 man/ts_fil_wavelet.Rd | 2 man/ts_fil_winsor.Rd | 2 man/ts_integtune.Rd | 4 man/ts_knn.Rd | 4 man/ts_lagmap.Rd | 7 + man/ts_lm_mv.Rd |only man/ts_mlp.Rd | 4 man/ts_mv_spec.Rd |only man/ts_norm_an.Rd | 11 +- man/ts_norm_diff.Rd | 7 + man/ts_norm_gminmax.Rd | 2 man/ts_norm_none.Rd | 2 man/ts_norm_swminmax.Rd | 2 man/ts_periodic.Rd |only man/ts_persist.Rd |only man/ts_reg_mv.Rd |only man/ts_regsw.Rd | 6 + man/ts_regsw_mv.Rd |only man/ts_rf.Rd | 4 man/ts_sample.Rd | 9 +- man/ts_svm.Rd | 4 man/ts_tune.Rd | 4 man/ts_var.Rd |only man/ts_warma.Rd |only 112 files changed, 386 insertions(+), 211 deletions(-)
Title: Serology-Based Data Analysis and Visualization
Description: Data wrangling and cleaning, quality control checks and
implementation of machine learning classification algorithm.
Author: Dionne Argyropoulos [aut, cre]
Maintainer: Dionne Argyropoulos <argyropoulos.d@wehi.edu.au>
Diff between SeroTrackR versions 1.0.0 dated 2026-03-26 and 1.1.0 dated 2026-05-22
SeroTrackR-1.0.0/SeroTrackR/inst/extdata/excluding_LF016_threshold_values.csv |only SeroTrackR-1.1.0/SeroTrackR/DESCRIPTION | 16 SeroTrackR-1.1.0/SeroTrackR/MD5 | 74 SeroTrackR-1.1.0/SeroTrackR/NAMESPACE | 3 SeroTrackR-1.1.0/SeroTrackR/NEWS.md | 18 SeroTrackR-1.1.0/SeroTrackR/R/MFItoRAU.R | 59 SeroTrackR-1.1.0/SeroTrackR/R/classifyResults.R | 57 SeroTrackR-1.1.0/SeroTrackR/R/globals.R | 12 SeroTrackR-1.1.0/SeroTrackR/R/plotBoxPlotClassification.R | 3 SeroTrackR-1.1.0/SeroTrackR/R/plotMFI.R | 2 SeroTrackR-1.1.0/SeroTrackR/R/plotRAU.R | 2 SeroTrackR-1.1.0/SeroTrackR/R/plotStds.R | 130 - SeroTrackR-1.1.0/SeroTrackR/R/processPkPfPv.R | 8 SeroTrackR-1.1.0/SeroTrackR/R/readSeroData.R | 82 SeroTrackR-1.1.0/SeroTrackR/R/renderClassificationTable.R | 7 SeroTrackR-1.1.0/SeroTrackR/R/renderQCReport.R | 50 SeroTrackR-1.1.0/SeroTrackR/R/renderReport.R | 33 SeroTrackR-1.1.0/SeroTrackR/R/runPlasmoPipeline.R | 14 SeroTrackR-1.1.0/SeroTrackR/R/runPvSeroPipeline.R | 14 SeroTrackR-1.1.0/SeroTrackR/build/vignette.rds |binary SeroTrackR-1.1.0/SeroTrackR/inst/doc/FAQs.R | 116 + SeroTrackR-1.1.0/SeroTrackR/inst/doc/FAQs.Rmd | 230 ++ SeroTrackR-1.1.0/SeroTrackR/inst/doc/FAQs.html | 192 + SeroTrackR-1.1.0/SeroTrackR/inst/doc/Pk_Pv_Pf_Serology_Tutorial.html | 970 +++++----- SeroTrackR-1.1.0/SeroTrackR/inst/doc/PvSeroApp_R_Tutorial.html | 20 SeroTrackR-1.1.0/SeroTrackR/inst/doc/setup.Rmd | 16 SeroTrackR-1.1.0/SeroTrackR/inst/doc/setup.html | 18 SeroTrackR-1.1.0/SeroTrackR/inst/rmd/experiment1_20260408_ETH_v1.5.1_QCreport.log |only SeroTrackR-1.1.0/SeroTrackR/man/SeroTrackR-package.Rd | 5 SeroTrackR-1.1.0/SeroTrackR/man/classifyResults.Rd | 14 SeroTrackR-1.1.0/SeroTrackR/man/dot-check_platform.Rd | 8 SeroTrackR-1.1.0/SeroTrackR/man/dot-relabel_columns.Rd | 1 SeroTrackR-1.1.0/SeroTrackR/man/plotBoxPlotClassification.Rd | 3 SeroTrackR-1.1.0/SeroTrackR/man/readSeroData.Rd | 2 SeroTrackR-1.1.0/SeroTrackR/man/renderClassificationTable.Rd | 4 SeroTrackR-1.1.0/SeroTrackR/man/runPlasmoPipeline.Rd | 14 SeroTrackR-1.1.0/SeroTrackR/man/runPvSeroPipeline.Rd | 14 SeroTrackR-1.1.0/SeroTrackR/vignettes/FAQs.Rmd | 230 ++ SeroTrackR-1.1.0/SeroTrackR/vignettes/setup.Rmd | 16 39 files changed, 1620 insertions(+), 837 deletions(-)
Title: R Access to the 'FMP Cloud' and 'Financial Modeling Prep' API
Description: Use R to access to the 'Financial Modeling Prep' API <https://site.financialmodelingprep.com>.
Data available includes stock prices, market indexes, company fundamentals,
13F holdings data, and much more. A valid API token must be set to enable
functions.
Author: Anthony Trevisan [aut, cre]
Maintainer: Anthony Trevisan <tony@altanalyticsllc.com>
Diff between fmpcloudr versions 0.1.5 dated 2021-03-01 and 0.1.7 dated 2026-05-22
DESCRIPTION | 24 ++++++++++------------ MD5 | 36 +++++++++++++++++---------------- NAMESPACE | 1 NEWS.md | 9 +++++++- R/other.R | 37 +++++++++++++++++++++++++++++++++- R/setup.R | 7 +++--- R/utils.R | 2 - README.md | 33 ++++++++++++++++++------------ man/fmpc_cots_data.Rd | 4 +++ man/fmpc_etf_list.Rd |only man/fmpc_set_token.Rd | 7 +++--- tests/testthat/helper-skip.R |only tests/testthat/test-calendar.R | 4 --- tests/testthat/test-financials.R | 6 +---- tests/testthat/test-holdings.R | 6 +---- tests/testthat/test-marketInfo.R | 8 +------ tests/testthat/test-other.R | 5 +++- tests/testthat/test-pricing.R | 13 ++++------- tests/testthat/test-secDetails.R | 5 +--- tests/testthat/test-securityMetrics.R | 12 ++++------- 20 files changed, 131 insertions(+), 88 deletions(-)
Title: Parallel GLM
Description: Provides a parallel estimation method for generalized linear
models without compiling with a multithreaded LAPACK or BLAS.
Author: Benjamin Christoffersen [aut] ,
Anthony Williams [cph],
Boost developers [cph],
Tom Palmer [aut, cre]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
Diff between parglm versions 0.1.9-1 dated 2026-05-14 and 0.1.10 dated 2026-05-22
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 7 +++++++ R/parglm.R | 2 +- inst/doc/parglm.Rmd | 4 ++-- inst/doc/parglm.html | 6 +++--- man/parglm.Rd | 2 +- src/thread_pool.h | 7 ++++--- tests/testthat/test_misc.R | 16 +++++++++------- vignettes/parglm.Rmd | 4 ++-- vignettes/parglm.Rmd.orig | 4 ++-- 11 files changed, 44 insertions(+), 34 deletions(-)
Title: Translate R Expressions to 'MathML' and 'LaTeX'/'MathJax'
Description: Translate R expressions to 'MathML' or 'MathJax'/'LaTeX' so that
they can be rendered in R markdown documents and shiny apps. This package
depends on R package 'rolog', which requires an installation of the
'SWI'-'Prolog' runtime either from 'swi-prolog.org' or from R
package 'rswipl'.
Author: Matthias Gondan [aut, cre, cph] ,
Irene Alfarone [aut] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between mathml versions 1.7 dated 2026-01-17 and 1.8 dated 2026-05-22
DESCRIPTION | 10 +- MD5 | 22 ++-- NEWS.md | 6 + R/mathml.R | 41 +++++++- build/vignette.rds |binary inst/doc/mathml.R | 19 ++-- inst/doc/mathml.Rmd | 29 +++--- inst/doc/mathml.html | 198 +++++++++++++++++++++--------------------- inst/pl/lib/main.pl | 2 inst/pl/lib/op.pl | 19 ++-- vignettes/bibliography.bibtex | 2 vignettes/mathml.Rmd | 29 +++--- 12 files changed, 219 insertions(+), 158 deletions(-)
More information about free1way.docreg at CRAN
Permanent link
Title: Data Base Backend for 'mlr3'
Description: Extends the 'mlr3' package with a backend to transparently
work with databases such as 'SQLite', 'DuckDB', 'MySQL', 'MariaDB', or
'PostgreSQL'. The package provides three additional backends:
'DataBackendDplyr' relies on the abstraction of package 'dbplyr' to
interact with most DBMS. 'DataBackendDuckDB' operates on 'DuckDB' data
bases and also on Apache Parquet files. 'DataBackendPolars' operates on
'Polars' data frames.
Author: Michel Lang [aut] ,
Lona Koers [aut],
Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3db versions 0.7.1 dated 2026-02-28 and 0.7.2 dated 2026-05-22
DESCRIPTION | 6 +- MD5 | 26 ++++++------ NEWS.md | 4 + R/DataBackendDplyr.R | 35 +++++++++++----- R/DataBackendDuckDB.R | 67 ++++++++++++++++++++++---------- R/DataBackendPolars.R | 51 +++++++++++++++--------- R/as_duckdb_backend.R | 29 ++++++++++--- R/as_polars_backend.R | 5 +- R/as_sqlite_backend.R | 12 ++++- R/helper.R | 5 -- R/zzz.R | 3 - tests/testthat/helper.R | 3 + tests/testthat/test_as_polars_backend.R | 1 tests/testthat/test_polars.R | 18 +++++--- 14 files changed, 175 insertions(+), 90 deletions(-)
Title: Joint Model for Longitudinal and Multiple Time to Events Data
Description: Provides model fitting, prediction, and plotting for joint models of longitudinal and multiple time-to-event data, including methods from Rizopoulos (2012) <doi:10.1201/b12208>. Useful for handling complex survival and longitudinal data in clinical research.
Author: Atanu Bhattacharjee [aut, cre]
Maintainer: Atanu Bhattacharjee <atanustat@gmail.com>
Diff between JMbdirect versions 0.1.0 dated 2025-03-11 and 0.1.1 dated 2026-05-22
DESCRIPTION | 18 +++++++----------- MD5 | 24 ++++++++++++------------ R/jmbB.R | 2 +- R/jmcsB.R | 2 +- R/jmrmlB.R | 2 +- R/jmstB.R | 2 +- R/plot.jmcsB.R | 4 ++-- R/predict.R | 4 ++-- R/print.R | 16 ++++++++-------- man/jmbB.Rd | 2 +- man/jmcsB.Rd | 2 +- man/jmrmlB.Rd | 2 +- man/jmstB.Rd | 2 +- 13 files changed, 39 insertions(+), 43 deletions(-)
Title: Discovery, Retrieval, and Analysis of Water Isotope Data
Description: The wiDB...() functions provide an interface to the public API
of the wiDB <https://github.com/SPATIAL-Lab/isoWater/blob/master/Protocol.md>:
build, check and submit queries, and receive and
unpack responses. Data analysis functions support Bayesian
inference of the source and source isotope composition of water
samples that may have experienced evaporation. Algorithms
adapted from Bowen et al. (2018, <doi:10.1007/s00442-018-4192-5>).
Author: Gabe Bowen [aut, cre]
Maintainer: Gabe Bowen <gabe.bowen@utah.edu>
Diff between isoWater versions 1.2.1 dated 2025-07-01 and 1.2.2 dated 2026-05-22
DESCRIPTION | 8 ++-- MD5 | 8 ++-- NEWS.md | 3 + R/wiDBfunctions.R | 14 +++++++- inst/doc/isoWater.html | 83 ++++++++++++++++++++++++------------------------- 5 files changed, 65 insertions(+), 51 deletions(-)
Title: Use Foreach to Parallelize via the Future Framework
Description: The 'future' package provides a unifying parallelization framework for R that supports many parallel and distributed backends <doi:10.32614/RJ-2021-048>. The 'foreach' package provides a powerful API for iterating over an R expression in parallel. The 'doFuture' package brings the best of the two together. There are two alternative ways to use this package. The recommended approach is to use 'y <- foreach(...) %dofuture% { ... }', which does not require using 'registerDoFuture()' and has many advantages over '%dopar%'. The alternative is the traditional 'foreach' approach by registering the 'foreach' adapter 'registerDoFuture()' and so that 'y <- foreach(...) %dopar% { ... }' runs in parallelizes with the 'future' framework.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between doFuture versions 1.2.1 dated 2026-02-20 and 1.2.2 dated 2026-05-22
doFuture-1.2.1/doFuture/inst/testme/test-utils.R |only doFuture-1.2.1/doFuture/tests/test-utils.R |only doFuture-1.2.2/doFuture/DESCRIPTION | 8 doFuture-1.2.2/doFuture/MD5 | 54 +++- doFuture-1.2.2/doFuture/NEWS.md | 13 - doFuture-1.2.2/doFuture/R/doFuture-package.R | 77 +++--- doFuture-1.2.2/doFuture/R/doFuture.R | 32 ++ doFuture-1.2.2/doFuture/R/doFuture2.R | 28 ++ doFuture-1.2.2/doFuture/build/vignette.rds |binary doFuture-1.2.2/doFuture/inst/doc/doFuture-1-overview.html | 96 +++++-- doFuture-1.2.2/doFuture/inst/doc/doFuture-1-overview.md.rsp | 121 ++++++---- doFuture-1.2.2/doFuture/inst/testme/test-debug.R |only doFuture-1.2.2/doFuture/inst/testme/test-dofuture-options.R |only doFuture-1.2.2/doFuture/inst/testme/test-dopar-options.R |only doFuture-1.2.2/doFuture/inst/testme/test-errors-dofuture.R |only doFuture-1.2.2/doFuture/inst/testme/test-errors-dopar.R |only doFuture-1.2.2/doFuture/inst/testme/test-foreach_dofuture,disposable.R |only doFuture-1.2.2/doFuture/inst/testme/test-foreach_dofuture,ordering.R |only doFuture-1.2.2/doFuture/inst/testme/test-foreach_dopar,disposable.R |only doFuture-1.2.2/doFuture/inst/testme/test-foreach_dopar,ordering.R |only doFuture-1.2.2/doFuture/inst/testme/test-globals-maxSize.R |only doFuture-1.2.2/doFuture/inst/testme/test-internals.R |only doFuture-1.2.2/doFuture/inst/testme/test-rng-misuse.R |only doFuture-1.2.2/doFuture/inst/testme/test-verbose.R |only doFuture-1.2.2/doFuture/inst/testme/test-with.DoPar.R | 12 doFuture-1.2.2/doFuture/man/doFuture.Rd | 80 ++++-- doFuture-1.2.2/doFuture/man/doFuture.options.Rd | 6 doFuture-1.2.2/doFuture/man/grapes-dofuture-grapes.Rd | 2 doFuture-1.2.2/doFuture/tests/test-debug.R |only doFuture-1.2.2/doFuture/tests/test-dofuture-options.R |only doFuture-1.2.2/doFuture/tests/test-dopar-options.R |only doFuture-1.2.2/doFuture/tests/test-errors-dofuture.R |only doFuture-1.2.2/doFuture/tests/test-errors-dopar.R |only doFuture-1.2.2/doFuture/tests/test-foreach_dofuture,disposable.R |only doFuture-1.2.2/doFuture/tests/test-foreach_dofuture,ordering.R |only doFuture-1.2.2/doFuture/tests/test-foreach_dopar,disposable.R |only doFuture-1.2.2/doFuture/tests/test-foreach_dopar,ordering.R |only doFuture-1.2.2/doFuture/tests/test-globals-maxSize.R |only doFuture-1.2.2/doFuture/tests/test-internals.R |only doFuture-1.2.2/doFuture/tests/test-rng-misuse.R |only doFuture-1.2.2/doFuture/tests/test-verbose.R |only doFuture-1.2.2/doFuture/vignettes/doFuture-1-overview.md.rsp | 121 ++++++---- 42 files changed, 443 insertions(+), 207 deletions(-)
Title: Binscatter Estimation and Inference
Description: Provides tools for statistical analysis using the binscatter methods developed by Cattaneo, Crump, Farrell and Feng (2024) <https://nppackages.github.io/references/Cattaneo-Crump-Farrell-Feng_2024_AER.pdf>, Cattaneo, Crump, Farrell and Feng (2025) <https://nppackages.github.io/references/Cattaneo-Crump-Farrell-Feng_2025_Stata.pdf> and Cattaneo, Crump, Farrell and Feng (2026) <https://nppackages.github.io/references/Cattaneo-Crump-Farrell-Feng_2026_RESTAT.pdf>. Binscatter provides a flexible way of describing the relationship between two variables based on partitioning/binning of the independent variable of interest. binsreg(), binsqreg() and binsglm() implement binscatter least squares regression, quantile regression and generalized linear regression respectively, with particular focus on constructing binned scatter plots. They also implement robust (pointwise and uniform) inference of regression functions and derivatives thereof. binstest() implements hypothesis test [...truncated...]
Author: Matias D. Cattaneo [aut, cre],
Richard K. Crump [aut],
Max H. Farrell [aut],
Yingjie Feng [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between binsreg versions 2.0 dated 2026-05-15 and 2.1 dated 2026-05-22
binsreg-2.0/binsreg/tests/testthat |only binsreg-2.0/binsreg/tests/testthat.R |only binsreg-2.1/binsreg/DESCRIPTION | 8 binsreg-2.1/binsreg/MD5 | 22 binsreg-2.1/binsreg/R/binsglm.R | 2 binsreg-2.1/binsreg/R/binspwc.R | 40 binsreg-2.1/binsreg/R/binsreg.R | 10 binsreg-2.1/binsreg/R/binsreg_functions.R | 893 +++++++++++-- binsreg-2.1/binsreg/R/binsregselect.R | 46 binsreg-2.1/binsreg/R/binstest.R | 40 binsreg-2.1/binsreg/tests/fixtures/replication-r-smoke.csv | 28 11 files changed, 907 insertions(+), 182 deletions(-)
Title: Extension to 'spatstat' for Large Datasets on a Linear Network
Description: Extension to the 'spatstat' family of packages, for analysing
large datasets of spatial points on a network. The geometrically-
corrected K function is computed using a memory-efficient
tree-based algorithm described by Rakshit, Baddeley and Nair (2019).
Author: Suman Rakshit [aut, cph] ,
Adrian Baddeley [cre, cph]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.Knet versions 3.1-2 dated 2024-09-05 and 3.1-3 dated 2026-05-22
DESCRIPTION | 26 ++++++++++++++------------ MD5 | 18 +++++++++--------- NEWS | 19 +++++++++++++++++++ R/Knet.R | 19 +++++++++++++------ R/Knetinhom.R | 23 +++++++++++++++-------- build/partial.rdb |binary data/wacrashes.rda |binary man/Knet.Rd | 8 ++++++-- man/Knetinhom.Rd | 6 +++++- tests/alltests.R | 5 +++++ 10 files changed, 86 insertions(+), 38 deletions(-)
Title: A Lightweight Interface Between 'igraph' and 'ggplot2' Graphics
Description: An interface to integrate 'igraph' and 'ggplot2' graphics
within a normalized coordinate system. 'RGraphSpace' implements
geometric objects based on 'ggplot2' prototypes, optimized for
the representation of large networks. The package provides three
specialized 'geoms' to translate graph data into geometric layers,
supporting customization of aesthetics and visual styles. These
'geoms' use a dual-anchor normalization approach to align layers,
required for analyses where network elements must be referenced
to a spatial map. 'RGraphSpace' aims to facilitate side-by-side
visualization of multiple graphs spatially aligned with reference
maps and images.
Author: Sysbiolab Team [aut],
Flavio Kessler [ctb],
Jonathan Back [ctb],
Lana Querne [ctb],
Victor Apolonio [ctb],
Vinicius Chagas [ctb],
Mauro Castro [cre]
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Diff between RGraphSpace versions 1.2.0 dated 2026-04-25 and 1.3.0 dated 2026-05-22
RGraphSpace-1.2.0/RGraphSpace/vignettes/figs |only RGraphSpace-1.3.0/RGraphSpace/DESCRIPTION | 16 RGraphSpace-1.3.0/RGraphSpace/MD5 | 83 - RGraphSpace-1.3.0/RGraphSpace/NAMESPACE | 18 RGraphSpace-1.3.0/RGraphSpace/R/geom-edgespace.R | 360 ++++--- RGraphSpace-1.3.0/RGraphSpace/R/geom-graphspace.R | 104 +- RGraphSpace-1.3.0/RGraphSpace/R/geom-nodespace.R | 221 +++- RGraphSpace-1.3.0/RGraphSpace/R/gspace-classes.R | 76 + RGraphSpace-1.3.0/RGraphSpace/R/gspace-constructor.R | 20 RGraphSpace-1.3.0/RGraphSpace/R/gspace-generics.R | 5 RGraphSpace-1.3.0/RGraphSpace/R/gspace-methods.R | 207 +++- RGraphSpace-1.3.0/RGraphSpace/R/gspace-misc.R | 3 RGraphSpace-1.3.0/RGraphSpace/R/gspace-normalize.R | 1 RGraphSpace-1.3.0/RGraphSpace/R/gspace-themes.R | 4 RGraphSpace-1.3.0/RGraphSpace/R/gspace-validation.R | 13 RGraphSpace-1.3.0/RGraphSpace/R/inject-nodespace.R | 315 +++++- RGraphSpace-1.3.0/RGraphSpace/build/vignette.rds |binary RGraphSpace-1.3.0/RGraphSpace/inst/CITATION | 5 RGraphSpace-1.3.0/RGraphSpace/inst/NEWS.Rd | 20 RGraphSpace-1.3.0/RGraphSpace/inst/doc/RGraphSpace.R | 214 ---- RGraphSpace-1.3.0/RGraphSpace/inst/doc/RGraphSpace.Rmd | 355 ------- RGraphSpace-1.3.0/RGraphSpace/inst/doc/RGraphSpace.html | 472 +--------- RGraphSpace-1.3.0/RGraphSpace/man/GeomEdgeSpace.Rd | 5 RGraphSpace-1.3.0/RGraphSpace/man/GeomGraphSpace.Rd | 5 RGraphSpace-1.3.0/RGraphSpace/man/GeomNodeSpace.Rd | 5 RGraphSpace-1.3.0/RGraphSpace/man/GraphSpace-accessors.Rd | 21 RGraphSpace-1.3.0/RGraphSpace/man/GraphSpace-class.Rd | 2 RGraphSpace-1.3.0/RGraphSpace/man/GraphSpace-internal.Rd |only RGraphSpace-1.3.0/RGraphSpace/man/GraphSpace-methods.Rd | 22 RGraphSpace-1.3.0/RGraphSpace/man/RGraphSpace-package.Rd | 3 RGraphSpace-1.3.0/RGraphSpace/man/StatEdgeSpace.Rd |only RGraphSpace-1.3.0/RGraphSpace/man/StatNodeSpace.Rd |only RGraphSpace-1.3.0/RGraphSpace/man/as_colorraster.Rd | 2 RGraphSpace-1.3.0/RGraphSpace/man/dot-generate_gs_uuid.Rd |only RGraphSpace-1.3.0/RGraphSpace/man/geom_edgespace.Rd | 43 RGraphSpace-1.3.0/RGraphSpace/man/geom_graphspace.Rd | 14 RGraphSpace-1.3.0/RGraphSpace/man/geom_nodespace.Rd | 52 - RGraphSpace-1.3.0/RGraphSpace/man/getGraphSpace-methods.Rd | 10 RGraphSpace-1.3.0/RGraphSpace/man/gtoys.Rd | 1 RGraphSpace-1.3.0/RGraphSpace/man/inject_nodespace.Rd | 2 RGraphSpace-1.3.0/RGraphSpace/man/normalizeGraphSpace-methods.Rd | 1 RGraphSpace-1.3.0/RGraphSpace/man/plotGraphSpace-methods.Rd | 7 RGraphSpace-1.3.0/RGraphSpace/man/theme_gspace.Rd | 4 RGraphSpace-1.3.0/RGraphSpace/vignettes/RGraphSpace.Rmd | 355 ------- 44 files changed, 1320 insertions(+), 1746 deletions(-)
Title: General Bivariate Copula Theory and Many Utility Functions
Description: Extensive functions for bivariate copula (bicopula) computations and related operations
for bicopula theory. The lower, upper, product, and select other bicopula are implemented along
with operations including the diagonal, survival copula, dual of a copula, co-copula, and
numerical bicopula density. Level sets, horizontal and vertical sections are supported. Numerical
derivatives and inverses of a bicopula are provided through which simulation is implemented.
Bicopula composition, convex combination, asymmetry extension, and products also are provided.
Support extends to the Kendall Function as well as the Lmoments thereof. Kendall Tau,
Spearman Rho and Footrule, Gini Gamma, Blomqvist Beta, Hoeffding Phi, Schweizer-
Wolff Sigma, tail dependency, tail order, skewness, and bivariate Lmoments are implemented, and
positive/negative quadrant dependency, left (right) increasing (decreasing) are available.
Other features include Kullback-Leibler Divergence, Vuong Procedure, spectral measure, [...truncated...]
Author: William Asquith [aut, cre]
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between copBasic versions 2.2.11 dated 2025-11-03 and 2.2.14 dated 2026-05-22
copBasic-2.2.11/copBasic/inst/OtherTest.R |only copBasic-2.2.14/copBasic/DESCRIPTION | 8 copBasic-2.2.14/copBasic/MD5 | 117 ++--- copBasic-2.2.14/copBasic/NAMESPACE | 7 copBasic-2.2.14/copBasic/NEWS | 51 ++ copBasic-2.2.14/copBasic/R/EMPIRgrid.R | 21 copBasic-2.2.14/copBasic/R/EMPIRgrid_fast.R |only copBasic-2.2.14/copBasic/R/EMPIRgrid_lkup.R |only copBasic-2.2.14/copBasic/R/ORDSUMcop.R | 40 - copBasic-2.2.14/copBasic/R/ORDSUWcop.R | 40 - copBasic-2.2.14/copBasic/R/bilmoms.R | 13 copBasic-2.2.14/copBasic/R/lcomCOP.R | 3 copBasic-2.2.14/copBasic/R/lcomCOPpv.R | 36 - copBasic-2.2.14/copBasic/R/wolfCOP.R | 45 +- copBasic-2.2.14/copBasic/R/wolfCOPsamc.R |only copBasic-2.2.14/copBasic/R/wolfCOPtest.R |only copBasic-2.2.14/copBasic/build/partial.rdb |binary copBasic-2.2.14/copBasic/data/wolfCOPtest_data_smlsam.RData |only copBasic-2.2.14/copBasic/man/EMPIRcop.Rd | 27 - copBasic-2.2.14/copBasic/man/EMPIRgrid.Rd | 270 ++++++------ copBasic-2.2.14/copBasic/man/EMPIRgrid_fast.Rd |only copBasic-2.2.14/copBasic/man/EMPIRgrid_lkup.Rd |only copBasic-2.2.14/copBasic/man/EMPIRgridder.Rd | 4 copBasic-2.2.14/copBasic/man/EMPIRgridder2.Rd | 2 copBasic-2.2.14/copBasic/man/EMPIRgridderinv.Rd | 2 copBasic-2.2.14/copBasic/man/EMPIRgridderinv2.Rd | 2 copBasic-2.2.14/copBasic/man/EuvCOP.Rd | 2 copBasic-2.2.14/copBasic/man/EvuCOP.Rd | 4 copBasic-2.2.14/copBasic/man/HRcop.Rd | 2 copBasic-2.2.14/copBasic/man/JOcopB5.Rd | 2 copBasic-2.2.14/copBasic/man/MOcop.Rd | 4 copBasic-2.2.14/copBasic/man/ORDSUMcop.Rd | 8 copBasic-2.2.14/copBasic/man/PARETOcop.Rd | 2 copBasic-2.2.14/copBasic/man/PSP.Rd | 2 copBasic-2.2.14/copBasic/man/RAYcop.Rd | 4 copBasic-2.2.14/copBasic/man/bicoploc.Rd | 4 copBasic-2.2.14/copBasic/man/bilmoms.Rd | 42 - copBasic-2.2.14/copBasic/man/copBasic-package.Rd | 33 - copBasic-2.2.14/copBasic/man/copBasic.fitpara.Rd | 4 copBasic-2.2.14/copBasic/man/densityCOP.Rd | 2 copBasic-2.2.14/copBasic/man/duCOP.Rd | 4 copBasic-2.2.14/copBasic/man/figures/lmrdiaT34wolfP.jpg |only copBasic-2.2.14/copBasic/man/figures/lmrdiaT34wolfP.pdf |only copBasic-2.2.14/copBasic/man/footCOP.Rd | 2 copBasic-2.2.14/copBasic/man/hoefCOP.Rd | 2 copBasic-2.2.14/copBasic/man/isCOP.permsym.Rd | 2 copBasic-2.2.14/copBasic/man/joint.curvesCOP2.Rd | 2 copBasic-2.2.14/copBasic/man/jointCOP.Rd | 2 copBasic-2.2.14/copBasic/man/kfuncCOP.Rd | 6 copBasic-2.2.14/copBasic/man/kfuncCOPlmoms.Rd | 2 copBasic-2.2.14/copBasic/man/lcomCOP.Rd | 6 copBasic-2.2.14/copBasic/man/lcomCOPpv.Rd | 30 - copBasic-2.2.14/copBasic/man/med.regressCOP.Rd | 4 copBasic-2.2.14/copBasic/man/med.regressCOP2.Rd | 2 copBasic-2.2.14/copBasic/man/prod2COP.Rd | 2 copBasic-2.2.14/copBasic/man/simCOPmicro.Rd | 2 copBasic-2.2.14/copBasic/man/statTn.Rd | 2 copBasic-2.2.14/copBasic/man/surCOP.Rd | 2 copBasic-2.2.14/copBasic/man/tailconCOP.Rd | 2 copBasic-2.2.14/copBasic/man/taildepCOP.Rd | 2 copBasic-2.2.14/copBasic/man/tailordCOP.Rd | 6 copBasic-2.2.14/copBasic/man/vuongCOP.Rd | 2 copBasic-2.2.14/copBasic/man/wolfCOP.Rd | 132 ++++- copBasic-2.2.14/copBasic/man/wolfCOPsamc.Rd |only copBasic-2.2.14/copBasic/man/wolfCOPtest.Rd |only copBasic-2.2.14/copBasic/man/wolfCOPtest_data_smlsam.Rd |only 66 files changed, 610 insertions(+), 409 deletions(-)
Title: Occurrence Data Cleaning
Description: Flags and checks occurrence data that are in Darwin Core
format. The package includes generic functions and data as well as
some that are specific to bees. This package is meant to build upon
and be complimentary to other excellent occurrence cleaning packages,
including 'bdc' and 'CoordinateCleaner'. This package uses datasets
from several sources and particularly from the Discover Life Website,
created by Ascher and Pickering (2020). For further information,
please see the original publication and package website. Publication
- Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package
website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.
Author: James B. Dorey [aut, cre, cph] ,
Robert L. O'Reilly [aut] ,
Silas Bossert [aut] ,
Erica E. Fischer [aut]
Maintainer: James B. Dorey <jbdorey@me.com>
Diff between BeeBDC versions 1.3.3 dated 2026-02-06 and 1.3.4 dated 2026-05-22
DESCRIPTION | 8 - MD5 | 32 ++--- NAMESPACE | 39 ------ NEWS.md | 18 ++ R/ColTypeR.R | 7 - R/HarmoniseR.R | 228 ++++++++++++++++++++++++++++++++++--- R/beesTaxonomy.R | 5 R/ggRichnessWrapper.R | 45 ++++++- R/jbd_create_figures.R | 12 - R/plotFlagSummary.R | 5 README.md | 213 +++++++++++++++++++++------------- inst/CITATION | 6 man/ColTypeR.Rd | 14 +- man/atlasDownloader.Rd | 2 man/beesTaxonomy.Rd | 5 man/harmoniseR.Rd | 13 ++ tests/testthat/test-readr_BeeBDC.R | 48 +++---- 17 files changed, 485 insertions(+), 215 deletions(-)
Title: Double Generalized Gamma Regression Models
Description: Fits double generalized Gamma regression models from a Bayesian perspective, where both the mean and shape parameters are modeled simultaneously using flexible link functions. The methodology is based on Cepeda-Cuervo and Urdinola (2012) <doi:10.1080/03610918.2011.600500> and extended in Cepeda-Cuervo (2026), 'Double Generalized Linear Models: Likelihood and Bayesian Methods' (ISBN: 9781041169970). The package provides parameter estimation, model fitting, and model comparison tools, including Akaike Information Criterion (AIC) and Bayesian Information Criterion (BIC).
Author: Arturo Camargo-Lozano [aut, cre],
Edilberto Cepeda-Cuervo [aut]
Maintainer: Arturo Camargo-Lozano <bacamargol@unal.edu.co>
Diff between Bayesiangammareg versions 0.1.0 dated 2020-02-06 and 0.1.1 dated 2026-05-22
DESCRIPTION | 23 +++++++++++------------ MD5 | 24 ++++++++++++------------ R/GammaIdentity.R | 14 +++++++++----- R/GammaLog.R | 15 +++++++++------ R/criteria.R | 27 +++++++++++++++++++-------- R/gammaresiduals.R | 3 +-- R/summary.Bayesiangammareg.R | 5 ++--- man/Bayesiangammareg.Rd | 13 +++++++------ man/GammaIdentity.Rd | 23 ++--------------------- man/GammaLog.Rd | 17 +++++++++-------- man/criteria.Rd | 8 ++++---- man/gammaresiduals.Rd | 4 ++-- man/summary.Bayesiangammareg.Rd | 2 +- 13 files changed, 88 insertions(+), 90 deletions(-)
More information about Bayesiangammareg at CRAN
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