Title: Forest/Tree Data Frames
Description: Provides data frames for forest or tree data structures. You can
create forest data structures from data frames and process them based on
their hierarchies.
Author: Mizuki Uchida [aut, cre]
Maintainer: Mizuki Uchida <uchidamizuki@vivaldi.net>
Diff between timbr versions 0.2.2 dated 2023-04-29 and 0.3.0 dated 2026-07-16
timbr-0.2.2/timbr/R/tidygraph.R |only timbr-0.2.2/timbr/R/zzz.R |only timbr-0.2.2/timbr/man/dplyr.Rd |only timbr-0.2.2/timbr/man/is_forest.Rd |only timbr-0.2.2/timbr/man/node.Rd |only timbr-0.3.0/timbr/DESCRIPTION | 13 timbr-0.3.0/timbr/MD5 | 81 ++-- timbr-0.3.0/timbr/NAMESPACE | 61 +-- timbr-0.3.0/timbr/NEWS.md | 11 timbr-0.3.0/timbr/R/children.R | 101 ++--- timbr-0.3.0/timbr/R/climb.R | 188 +++------- timbr-0.3.0/timbr/R/deprecated.R | 37 -- timbr-0.3.0/timbr/R/dplyr-rows.R |only timbr-0.3.0/timbr/R/dplyr.R | 349 +++---------------- timbr-0.3.0/timbr/R/forest-print.R |only timbr-0.3.0/timbr/R/forest.R | 197 +--------- timbr-0.3.0/timbr/R/groups.R | 94 ++--- timbr-0.3.0/timbr/R/leaves.R | 70 +-- timbr-0.3.0/timbr/R/node.R | 80 +++- timbr-0.3.0/timbr/R/pull.R |only timbr-0.3.0/timbr/R/rbind.R | 58 +-- timbr-0.3.0/timbr/R/tibble.R | 22 - timbr-0.3.0/timbr/R/timbr-package.R | 24 + timbr-0.3.0/timbr/R/traverse.R | 72 +-- timbr-0.3.0/timbr/R/utils.R | 92 +++-- timbr-0.3.0/timbr/README.md | 68 ++- timbr-0.3.0/timbr/man/as_forest.Rd | 44 +- timbr-0.3.0/timbr/man/children.Rd | 40 +- timbr-0.3.0/timbr/man/climb.Rd | 44 +- timbr-0.3.0/timbr/man/forest_by.Rd | 2 timbr-0.3.0/timbr/man/leaves.Rd | 34 - timbr-0.3.0/timbr/man/map_forest.Rd | 48 +- timbr-0.3.0/timbr/man/node_name.Rd |only timbr-0.3.0/timbr/man/node_value.Rd |only timbr-0.3.0/timbr/man/timbr-package.Rd | 37 +- timbr-0.3.0/timbr/man/traverse.Rd | 46 +- timbr-0.3.0/timbr/tests/testthat/_snaps |only timbr-0.3.0/timbr/tests/testthat/helper-forest.R |only timbr-0.3.0/timbr/tests/testthat/test-children.R | 79 ++-- timbr-0.3.0/timbr/tests/testthat/test-climb.R | 114 ++++-- timbr-0.3.0/timbr/tests/testthat/test-deprecated.R |only timbr-0.3.0/timbr/tests/testthat/test-dplyr.R | 244 +++++++++++-- timbr-0.3.0/timbr/tests/testthat/test-forest-print.R |only timbr-0.3.0/timbr/tests/testthat/test-forest.R | 95 ++--- timbr-0.3.0/timbr/tests/testthat/test-groups.R |only timbr-0.3.0/timbr/tests/testthat/test-leaves.R |only timbr-0.3.0/timbr/tests/testthat/test-node.R |only timbr-0.3.0/timbr/tests/testthat/test-traverse.R | 73 ++- 48 files changed, 1198 insertions(+), 1320 deletions(-)
Title: Parallel Simulator
Description: Perform flexible simulation studies using one or multiple computer
cores. The package is set up to be usable on high-performance clusters in
addition to being run locally (i.e., see the package vignettes for more
information).
Author: Sacha Epskamp [aut, cre] ,
Xinkai Du [ctb],
Mihai Constantin [aut] ,
Adela Maria Isvoranu [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between parSim versions 0.3.1 dated 2026-02-26 and 0.4.0 dated 2026-07-16
DESCRIPTION | 17 ++-- MD5 | 23 ++--- NAMESPACE | 1 NEWS.md | 71 ++++++++++++++++ R/parSim.R | 139 ++++++++++++++++++++++++++++++--- R/parSim_dt.R | 185 +++++++++++++++++++++++++++++++++++++------- build/vignette.rds |binary inst/doc/supercomputer.Rmd | 46 +++++----- inst/doc/supercomputer.html | 97 +++++++++++------------ man/parSim.Rd | 34 ++++++-- man/parSim_dt.Rd | 84 +++++++++++++++---- tests |only vignettes/supercomputer.Rmd | 46 +++++----- 13 files changed, 570 insertions(+), 173 deletions(-)
Title: Crosswalk Between 2020 Census ZIP Code Tabulation Areas (ZCTAs),
States and Counties
Description: Contains the US Census Bureau's 2020 ZCTA to County Relationship
File, as well as convenience functions to translate between States, Counties
and ZIP Code Tabulation Areas (ZCTAs).
Author: Ari Lamstein [aut],
MarketBridge LLC [cph, fnd],
Brenden Smith [ctb, cre]
Maintainer: Brenden Smith <brendensmithmi@gmail.com>
This is a re-admission after prior archival of version 2.0.0 dated 2023-04-19
Diff between zctaCrosswalk versions 2.0.0 dated 2023-04-19 and 2.0.1 dated 2026-07-16
zctaCrosswalk-2.0.0/zctaCrosswalk/inst/doc/a02_workflow-tidycensus.R |only zctaCrosswalk-2.0.1/zctaCrosswalk/DESCRIPTION | 24 zctaCrosswalk-2.0.1/zctaCrosswalk/LICENSE | 4 zctaCrosswalk-2.0.1/zctaCrosswalk/MD5 | 47 zctaCrosswalk-2.0.1/zctaCrosswalk/R/data.R | 40 zctaCrosswalk-2.0.1/zctaCrosswalk/R/zcta.R | 322 +-- zctaCrosswalk-2.0.1/zctaCrosswalk/README.md | 96 zctaCrosswalk-2.0.1/zctaCrosswalk/build/vignette.rds |binary zctaCrosswalk-2.0.1/zctaCrosswalk/data/state_names.rda |binary zctaCrosswalk-2.0.1/zctaCrosswalk/data/zcta_crosswalk.rda |binary zctaCrosswalk-2.0.1/zctaCrosswalk/inst/doc/a01_introduction.R | 114 - zctaCrosswalk-2.0.1/zctaCrosswalk/inst/doc/a01_introduction.Rmd | 234 +- zctaCrosswalk-2.0.1/zctaCrosswalk/inst/doc/a01_introduction.html | 975 ++++----- zctaCrosswalk-2.0.1/zctaCrosswalk/inst/doc/a02_workflow-tidycensus.Rmd | 179 - zctaCrosswalk-2.0.1/zctaCrosswalk/inst/doc/a02_workflow-tidycensus.html | 879 ++++---- zctaCrosswalk-2.0.1/zctaCrosswalk/inst/doc/a03_developer-notes.R | 40 zctaCrosswalk-2.0.1/zctaCrosswalk/inst/doc/a03_developer-notes.Rmd | 280 +- zctaCrosswalk-2.0.1/zctaCrosswalk/inst/doc/a03_developer-notes.html | 1015 +++++----- zctaCrosswalk-2.0.1/zctaCrosswalk/inst/gen_state_names.R | 50 zctaCrosswalk-2.0.1/zctaCrosswalk/man/get_zctas_by_state.Rd | 90 zctaCrosswalk-2.0.1/zctaCrosswalk/man/state_names.Rd | 28 zctaCrosswalk-2.0.1/zctaCrosswalk/man/zcta_crosswalk.Rd | 28 zctaCrosswalk-2.0.1/zctaCrosswalk/vignettes/a01_introduction.Rmd | 234 +- zctaCrosswalk-2.0.1/zctaCrosswalk/vignettes/a02_workflow-tidycensus.Rmd | 179 - zctaCrosswalk-2.0.1/zctaCrosswalk/vignettes/a03_developer-notes.Rmd | 280 +- 25 files changed, 2592 insertions(+), 2546 deletions(-)
Title: Convert, Validate, Format and Print Geographic Coordinates and
Waypoints
Description: Convert, validate, format and elegantly print geographic coordinates and waypoints
(paired latitude and longitude values) in decimal degrees, degrees and minutes, and degrees,
minutes and seconds using high performance C++ code to enable rapid conversion and formatting
of large coordinate and waypoint datasets.
Author: Mark Eisler [aut, cre, cph]
Maintainer: Mark Eisler <mark.eisler@bristol.ac.uk>
Diff between Waypoint versions 1.3.1 dated 2026-06-21 and 2.0.0 dated 2026-07-16
DESCRIPTION | 8 MD5 | 16 - NEWS.md | 51 ++-- R/CoordBase.R | 6 build/partial.rdb |binary man/convert.Rd | 9 src/CoordBase.cpp | 660 +++++++++++++++++++++++----------------------------- src/CoordBase.h | 579 +++++++++++++++++++++++++++++++++------------ src/RcppExports.cpp | 8 9 files changed, 779 insertions(+), 558 deletions(-)
Title: Some Additional Distributions
Description: Provides the density, distribution, quantile and generation functions of some obscure probability
distributions, including the doubly non-central t, F, Beta, and Eta distributions;
the lambda-prime and K-prime; the upsilon distribution; the (weighted) sum of
non-central chi-squares to a power; the (weighted) sum of log non-central chi-squares;
the product of non-central chi-squares to powers; the product of doubly non-central
F variables; the product of independent normals.
Author: Steven E. Pav [aut, cre, cph]
Maintainer: Steven E. Pav <shabbychef@gmail.com>
Diff between sadists versions 0.2.5 dated 2023-08-21 and 0.2.6 dated 2026-07-16
ChangeLog | 8 +++--- DESCRIPTION | 15 ++++++----- MD5 | 36 ++++++++++++++-------------- R/cumulants.r | 17 +++++++++++-- R/dnf.r | 4 +-- R/sadists.r | 12 ++++++--- R/upsilon.r | 1 README.md | 20 +++++---------- build/vignette.rds |binary inst/CITATION | 7 +++-- inst/doc/sadists.R | 60 ++++++++++++++++++++++++++--------------------- inst/doc/sadists.Rnw | 63 +++++++++++++++++++++++++++----------------------- inst/doc/sadists.pdf |binary man/NEWS.Rd | 11 +++++++- man/dupsilon.Rd | 4 --- man/runExample.Rd | 5 +++ man/sadists.Rd | 9 +++---- vignettes/sadists.Rnw | 63 +++++++++++++++++++++++++++----------------------- vignettes/sadists.bib | 13 +++++----- 19 files changed, 196 insertions(+), 152 deletions(-)
Title: Matrix-Variate Non-Gaussian Linear Regression Models
Description: Fits matrix-variate variance-gamma (MVVG) and matrix-variate normal-inverse-Gaussian (MVNIG) linear regression models using expectation-conditional maximization (ECM) algorithms. The models accommodate clustered matrix-valued responses, with unequal numbers of observations across subjects, correlated responses, skewness, and within-subject dependence. Functions are provided for model fitting, prediction, and subject-level influence assessment using approximate generalized Cook's distances. The package also includes motivating periodontal data from Gullah-speaking African Americans with Type-II diabetes. For details on the underlying matrix-variate distributions (MVVG and MVNIG), see Gallaugher and McNicholas (2019, <doi:10.1016/j.spl.2018.08.012>).
Author: Samuel Soon [aut, cre],
Dipankar Bandyopadhyay [aut],
Qingyang Liu [aut]
Maintainer: Samuel Soon <samksoon2@gmail.com>
Diff between MVNGmod versions 0.1.1 dated 2026-06-04 and 0.1.2 dated 2026-07-16
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Latent Variable Analysis
Description: Fit a variety of latent variable models, including confirmatory
factor analysis, structural equation modeling and latent growth curve models.
Author: Yves Rosseel [aut, cre] ,
Terrence D. Jorgensen [aut] ,
Luc De Wilde [aut],
Daniel Oberski [ctb],
Jarrett Byrnes [ctb],
Leonard Vanbrabant [ctb],
Victoria Savalei [ctb],
Ed Merkle [ctb],
Michael Hallquist [ctb],
Mijke Rhemtulla [ctb],
Myrsini Katsika [...truncated...]
Maintainer: Yves Rosseel <Yves.Rosseel@UGent.be>
Diff between lavaan versions 0.6-21 dated 2025-12-21 and 0.7-2 dated 2026-07-16
lavaan-0.6-21/lavaan/R/ctr_pairwise_table.R |only lavaan-0.6-21/lavaan/R/lav_export_bugs.R |only lavaan-0.6-21/lavaan/R/lav_fsr.R |only lavaan-0.6-21/lavaan/R/lav_h1.R |only lavaan-0.6-21/lavaan/R/lav_lavaanList_multipleGroups.R |only lavaan-0.6-21/lavaan/R/lav_lavaanList_multipleImputation.R |only lavaan-0.6-21/lavaan/R/lav_mplus.R |only lavaan-0.6-21/lavaan/R/lav_prelis.R |only lavaan-0.6-21/lavaan/R/lav_simulate.R |only lavaan-0.6-21/lavaan/R/lav_simulate_old.R |only lavaan-0.6-21/lavaan/R/lav_syntax_independence.R |only lavaan-0.6-21/lavaan/R/lav_syntax_mlist.R |only lavaan-0.6-21/lavaan/R/lav_syntax_parser_cr.R |only lavaan-0.6-21/lavaan/R/lav_syntax_parser_r.R |only lavaan-0.6-21/lavaan/R/lav_tables_mvb.R |only lavaan-0.6-21/lavaan/R/xxx_fsr.R |only lavaan-0.6-21/lavaan/data/FacialBurns.rda |only lavaan-0.6-21/lavaan/man/FacialBurns.Rd |only lavaan-0.7-2/lavaan/DESCRIPTION | 7 lavaan-0.7-2/lavaan/MD5 | 580 - lavaan-0.7-2/lavaan/NAMESPACE | 83 lavaan-0.7-2/lavaan/R/00alias.R |only lavaan-0.7-2/lavaan/R/00class.R | 3 lavaan-0.7-2/lavaan/R/00generic.R | 58 lavaan-0.7-2/lavaan/R/ctr_modelcov.R | 2 lavaan-0.7-2/lavaan/R/ctr_pairwise_fit.R | 151 lavaan-0.7-2/lavaan/R/ctr_pml_doubly_robust_utils.R | 488 - lavaan-0.7-2/lavaan/R/lav_aux.R |only lavaan-0.7-2/lavaan/R/lav_bootstrap.R | 879 +- lavaan-0.7-2/lavaan/R/lav_bvmix.R | 539 - lavaan-0.7-2/lavaan/R/lav_bvmix_2l.R |only lavaan-0.7-2/lavaan/R/lav_bvord.R | 886 +- lavaan-0.7-2/lavaan/R/lav_bvord_2l.R |only lavaan-0.7-2/lavaan/R/lav_bvreg.R | 627 - lavaan-0.7-2/lavaan/R/lav_bvreg_2l.R |only lavaan-0.7-2/lavaan/R/lav_cfa_1fac.R | 112 lavaan-0.7-2/lavaan/R/lav_cfa_bentler1982.R | 261 lavaan-0.7-2/lavaan/R/lav_cfa_fabin.R | 176 lavaan-0.7-2/lavaan/R/lav_cfa_guttman1952.R | 255 lavaan-0.7-2/lavaan/R/lav_cfa_jamesstein.R | 225 lavaan-0.7-2/lavaan/R/lav_cfa_utils.R | 187 lavaan-0.7-2/lavaan/R/lav_constraints.R | 542 - lavaan-0.7-2/lavaan/R/lav_cor.R | 100 lavaan-0.7-2/lavaan/R/lav_data.R | 1206 ++- lavaan-0.7-2/lavaan/R/lav_data_patterns.R | 386 - lavaan-0.7-2/lavaan/R/lav_data_print.R | 14 lavaan-0.7-2/lavaan/R/lav_data_simulate.R |only lavaan-0.7-2/lavaan/R/lav_data_update.R | 163 lavaan-0.7-2/lavaan/R/lav_dataframe.R | 74 lavaan-0.7-2/lavaan/R/lav_efa_bootstrap.R |only lavaan-0.7-2/lavaan/R/lav_efa_extraction.R | 363 - lavaan-0.7-2/lavaan/R/lav_efa_pace.R | 178 lavaan-0.7-2/lavaan/R/lav_efa_print.R | 130 lavaan-0.7-2/lavaan/R/lav_efa_summary.R | 385 - lavaan-0.7-2/lavaan/R/lav_efa_utils.R | 205 lavaan-0.7-2/lavaan/R/lav_effects.R |only lavaan-0.7-2/lavaan/R/lav_em_accel.R |only lavaan-0.7-2/lavaan/R/lav_export.R | 518 + lavaan-0.7-2/lavaan/R/lav_export_estimation.R | 98 lavaan-0.7-2/lavaan/R/lav_export_mplus.R | 653 + lavaan-0.7-2/lavaan/R/lav_fit.R | 46 lavaan-0.7-2/lavaan/R/lav_fit_aic.R | 76 lavaan-0.7-2/lavaan/R/lav_fit_by_level.R |only lavaan-0.7-2/lavaan/R/lav_fit_cfi.R | 649 + lavaan-0.7-2/lavaan/R/lav_fit_gfi.R | 570 + lavaan-0.7-2/lavaan/R/lav_fit_measures.R | 1560 ++-- lavaan-0.7-2/lavaan/R/lav_fit_other.R | 30 lavaan-0.7-2/lavaan/R/lav_fit_rmsea.R | 393 - lavaan-0.7-2/lavaan/R/lav_fit_srmr.R | 295 lavaan-0.7-2/lavaan/R/lav_fit_utils.R | 305 lavaan-0.7-2/lavaan/R/lav_func_deriv.R | 247 lavaan-0.7-2/lavaan/R/lav_graph.R | 322 lavaan-0.7-2/lavaan/R/lav_graphics.R | 6 lavaan-0.7-2/lavaan/R/lav_h1_implied.R | 239 lavaan-0.7-2/lavaan/R/lav_h1_logl.R | 125 lavaan-0.7-2/lavaan/R/lav_integrate.R | 221 lavaan-0.7-2/lavaan/R/lav_label_code.R | 14 lavaan-0.7-2/lavaan/R/lav_lavaanList_inspect.R | 278 lavaan-0.7-2/lavaan/R/lav_lavaanList_methods.R | 257 lavaan-0.7-2/lavaan/R/lav_lavaanList_simulate.R | 139 lavaan-0.7-2/lavaan/R/lav_lavaan_step00_init.R | 62 lavaan-0.7-2/lavaan/R/lav_lavaan_step01_ovnames.R | 467 - lavaan-0.7-2/lavaan/R/lav_lavaan_step02_options.R | 209 lavaan-0.7-2/lavaan/R/lav_lavaan_step03_data.R | 100 lavaan-0.7-2/lavaan/R/lav_lavaan_step04_partable.R | 142 lavaan-0.7-2/lavaan/R/lav_lavaan_step05_samplestats.R | 56 lavaan-0.7-2/lavaan/R/lav_lavaan_step06_h1.R | 2 lavaan-0.7-2/lavaan/R/lav_lavaan_step07_bounds.R | 4 lavaan-0.7-2/lavaan/R/lav_lavaan_step08_start.R | 48 lavaan-0.7-2/lavaan/R/lav_lavaan_step09_model.R | 81 lavaan-0.7-2/lavaan/R/lav_lavaan_step10_cache.R | 151 lavaan-0.7-2/lavaan/R/lav_lavaan_step11_optim.R | 322 lavaan-0.7-2/lavaan/R/lav_lavaan_step12_implied.R | 15 lavaan-0.7-2/lavaan/R/lav_lavaan_step13_vcov.R | 108 lavaan-0.7-2/lavaan/R/lav_lavaan_step14_test.R | 14 lavaan-0.7-2/lavaan/R/lav_lavaan_step15_baseline.R | 18 lavaan-0.7-2/lavaan/R/lav_lavaan_step16_rotation.R | 222 lavaan-0.7-2/lavaan/R/lav_lavaan_step17_lavaan.R | 63 lavaan-0.7-2/lavaan/R/lav_matrix.R | 1816 ++--- lavaan-0.7-2/lavaan/R/lav_matrix_rotate.R | 627 - lavaan-0.7-2/lavaan/R/lav_matrix_rotate_methods.R | 458 - lavaan-0.7-2/lavaan/R/lav_matrix_rotate_mg.R |only lavaan-0.7-2/lavaan/R/lav_matrix_rotate_utils.R | 190 lavaan-0.7-2/lavaan/R/lav_model.R | 543 - lavaan-0.7-2/lavaan/R/lav_model_compute.R | 783 +- lavaan-0.7-2/lavaan/R/lav_model_efa.R | 720 +- lavaan-0.7-2/lavaan/R/lav_model_estimate.R | 781 +- lavaan-0.7-2/lavaan/R/lav_model_estimate_rbm.R |only lavaan-0.7-2/lavaan/R/lav_model_find_iv.R |only lavaan-0.7-2/lavaan/R/lav_model_gradient.R | 1795 ++--- lavaan-0.7-2/lavaan/R/lav_model_gradient_mml.R | 330 lavaan-0.7-2/lavaan/R/lav_model_gradient_pml.R | 947 +- lavaan-0.7-2/lavaan/R/lav_model_h1_information.R | 1174 +-- lavaan-0.7-2/lavaan/R/lav_model_h1_omega.R | 115 lavaan-0.7-2/lavaan/R/lav_model_hessian.R | 224 lavaan-0.7-2/lavaan/R/lav_model_implied.R | 96 lavaan-0.7-2/lavaan/R/lav_model_information.R | 741 +- lavaan-0.7-2/lavaan/R/lav_model_lik.R | 171 lavaan-0.7-2/lavaan/R/lav_model_loglik.R | 259 lavaan-0.7-2/lavaan/R/lav_model_objective.R | 418 - lavaan-0.7-2/lavaan/R/lav_model_plotinfo.R | 244 lavaan-0.7-2/lavaan/R/lav_model_properties.R | 43 lavaan-0.7-2/lavaan/R/lav_model_utils.R | 221 lavaan-0.7-2/lavaan/R/lav_model_vcov.R | 764 +- lavaan-0.7-2/lavaan/R/lav_model_wls.R | 99 lavaan-0.7-2/lavaan/R/lav_model_wls_2l_cat.R |only lavaan-0.7-2/lavaan/R/lav_modification.R | 288 lavaan-0.7-2/lavaan/R/lav_mplus_lavaan.R | 1142 ++- lavaan-0.7-2/lavaan/R/lav_msg.R | 81 lavaan-0.7-2/lavaan/R/lav_muthen1984.R | 825 +- lavaan-0.7-2/lavaan/R/lav_muthen2007.R |only lavaan-0.7-2/lavaan/R/lav_mvnorm.R | 1058 +-- lavaan-0.7-2/lavaan/R/lav_mvnorm_cluster.R | 2874 +++----- lavaan-0.7-2/lavaan/R/lav_mvnorm_cluster_kernels.R |only lavaan-0.7-2/lavaan/R/lav_mvnorm_cluster_missing.R | 2107 +++--- lavaan-0.7-2/lavaan/R/lav_mvnorm_cluster_missing_louis.R |only lavaan-0.7-2/lavaan/R/lav_mvnorm_cluster_rs.R |only lavaan-0.7-2/lavaan/R/lav_mvnorm_h1.R | 653 - lavaan-0.7-2/lavaan/R/lav_mvnorm_kernels.R |only lavaan-0.7-2/lavaan/R/lav_mvnorm_missing.R | 1742 +---- lavaan-0.7-2/lavaan/R/lav_mvnorm_missing_h1.R | 373 - lavaan-0.7-2/lavaan/R/lav_mvreg.R | 770 -- lavaan-0.7-2/lavaan/R/lav_mvreg_cluster.R | 1552 ++-- lavaan-0.7-2/lavaan/R/lav_mvreg_missing.R |only lavaan-0.7-2/lavaan/R/lav_object_check_version.R | 98 lavaan-0.7-2/lavaan/R/lav_object_generate.R | 395 - lavaan-0.7-2/lavaan/R/lav_object_inspect.R | 3210 +++++---- lavaan-0.7-2/lavaan/R/lav_object_methods.R | 1621 ++-- lavaan-0.7-2/lavaan/R/lav_object_post_check.R | 57 lavaan-0.7-2/lavaan/R/lav_object_summary.R | 375 - lavaan-0.7-2/lavaan/R/lav_objective.R | 801 +- lavaan-0.7-2/lavaan/R/lav_optim_gn.R | 702 +- lavaan-0.7-2/lavaan/R/lav_optim_nlminb_constr.R | 180 lavaan-0.7-2/lavaan/R/lav_optim_noniter.R | 37 lavaan-0.7-2/lavaan/R/lav_options.R | 1095 ++- lavaan-0.7-2/lavaan/R/lav_options_default.R | 308 lavaan-0.7-2/lavaan/R/lav_options_estimator.R | 461 + lavaan-0.7-2/lavaan/R/lav_options_mimic.R | 25 lavaan-0.7-2/lavaan/R/lav_options_se.R | 35 lavaan-0.7-2/lavaan/R/lav_partable.R | 1512 ++-- lavaan-0.7-2/lavaan/R/lav_partable_attributes.R | 28 lavaan-0.7-2/lavaan/R/lav_partable_bounds.R | 505 - lavaan-0.7-2/lavaan/R/lav_partable_cache.R | 6 lavaan-0.7-2/lavaan/R/lav_partable_check.R | 88 lavaan-0.7-2/lavaan/R/lav_partable_complete.R | 90 lavaan-0.7-2/lavaan/R/lav_partable_constraints.R | 555 - lavaan-0.7-2/lavaan/R/lav_partable_efa.R | 261 lavaan-0.7-2/lavaan/R/lav_partable_flat.R | 928 +- lavaan-0.7-2/lavaan/R/lav_partable_from_lm.R | 40 lavaan-0.7-2/lavaan/R/lav_partable_full.R | 224 lavaan-0.7-2/lavaan/R/lav_partable_labels.R | 183 lavaan-0.7-2/lavaan/R/lav_partable_marker.R |only lavaan-0.7-2/lavaan/R/lav_partable_merge.R | 54 lavaan-0.7-2/lavaan/R/lav_partable_ov_from_data.R | 50 lavaan-0.7-2/lavaan/R/lav_partable_random.R | 138 lavaan-0.7-2/lavaan/R/lav_partable_subset.R | 831 +- lavaan-0.7-2/lavaan/R/lav_partable_unrestricted.R | 690 +- lavaan-0.7-2/lavaan/R/lav_partable_utils.R | 292 lavaan-0.7-2/lavaan/R/lav_partable_vnames.R | 944 +- lavaan-0.7-2/lavaan/R/lav_plot.R | 22 lavaan-0.7-2/lavaan/R/lav_plotinfo_positions.R | 1426 ++-- lavaan-0.7-2/lavaan/R/lav_plotinfo_rgraph.R | 318 lavaan-0.7-2/lavaan/R/lav_plotinfo_svgcode.R | 97 lavaan-0.7-2/lavaan/R/lav_plotinfo_tikzcode.R | 68 lavaan-0.7-2/lavaan/R/lav_pml_plrt.R | 343 lavaan-0.7-2/lavaan/R/lav_pml_plrt2.R | 192 lavaan-0.7-2/lavaan/R/lav_pml_test_plrt.R | 617 - lavaan-0.7-2/lavaan/R/lav_pml_utils.R | 389 - lavaan-0.7-2/lavaan/R/lav_predict.R | 2381 +++--- lavaan-0.7-2/lavaan/R/lav_predict_mdist.R |only lavaan-0.7-2/lavaan/R/lav_predict_y.R | 420 - lavaan-0.7-2/lavaan/R/lav_print.R | 1021 +- lavaan-0.7-2/lavaan/R/lav_representation.R | 50 lavaan-0.7-2/lavaan/R/lav_representation_lisrel.R | 4483 +++++++------ lavaan-0.7-2/lavaan/R/lav_representation_ram.R | 497 - lavaan-0.7-2/lavaan/R/lav_residuals.R | 3076 +++++--- lavaan-0.7-2/lavaan/R/lav_residuals_casewise.R | 27 lavaan-0.7-2/lavaan/R/lav_sam_step0.R | 240 lavaan-0.7-2/lavaan/R/lav_sam_step1.R | 491 - lavaan-0.7-2/lavaan/R/lav_sam_step1_local.R | 2900 +++++--- lavaan-0.7-2/lavaan/R/lav_sam_step2.R | 363 - lavaan-0.7-2/lavaan/R/lav_sam_step2_se.R | 743 +- lavaan-0.7-2/lavaan/R/lav_sam_utils.R | 1695 +++- lavaan-0.7-2/lavaan/R/lav_samplestats.R | 2766 ++++---- lavaan-0.7-2/lavaan/R/lav_samplestats_gamma.R | 1433 ++-- lavaan-0.7-2/lavaan/R/lav_samplestats_gamma_recipe.R |only lavaan-0.7-2/lavaan/R/lav_samplestats_icov.R | 30 lavaan-0.7-2/lavaan/R/lav_samplestats_igamma.R | 240 lavaan-0.7-2/lavaan/R/lav_samplestats_robust.R | 52 lavaan-0.7-2/lavaan/R/lav_samplestats_step1.R | 301 lavaan-0.7-2/lavaan/R/lav_samplestats_step2.R | 112 lavaan-0.7-2/lavaan/R/lav_samplestats_wls_2l.R |only lavaan-0.7-2/lavaan/R/lav_samplestats_wls_2l_cat.R |only lavaan-0.7-2/lavaan/R/lav_samplestats_wls_obs.R | 106 lavaan-0.7-2/lavaan/R/lav_scores.R | 575 + lavaan-0.7-2/lavaan/R/lav_sem_miiv.R | 2923 ++++++++ lavaan-0.7-2/lavaan/R/lav_sem_miiv_utils.R |only lavaan-0.7-2/lavaan/R/lav_standardize.R | 1196 +-- lavaan-0.7-2/lavaan/R/lav_start.R | 1097 +-- lavaan-0.7-2/lavaan/R/lav_syntax.R | 620 - lavaan-0.7-2/lavaan/R/lav_syntax_parser.R | 1001 +- lavaan-0.7-2/lavaan/R/lav_syntax_parser_open.R |only lavaan-0.7-2/lavaan/R/lav_tables.R | 793 +- lavaan-0.7-2/lavaan/R/lav_test.R | 682 + lavaan-0.7-2/lavaan/R/lav_test_LRT.R | 669 + lavaan-0.7-2/lavaan/R/lav_test_Wald.R | 164 lavaan-0.7-2/lavaan/R/lav_test_browne.R | 317 lavaan-0.7-2/lavaan/R/lav_test_diff.R | 495 - lavaan-0.7-2/lavaan/R/lav_test_fmg.R |only lavaan-0.7-2/lavaan/R/lav_test_hayakawa.R |only lavaan-0.7-2/lavaan/R/lav_test_print.R | 227 lavaan-0.7-2/lavaan/R/lav_test_satorra2000.R |only lavaan-0.7-2/lavaan/R/lav_test_satorra_bentler.R | 921 +- lavaan-0.7-2/lavaan/R/lav_test_score.R | 530 + lavaan-0.7-2/lavaan/R/lav_test_utils.R |only lavaan-0.7-2/lavaan/R/lav_test_yuan_bentler.R | 405 - lavaan-0.7-2/lavaan/R/lav_trace.R | 40 lavaan-0.7-2/lavaan/R/lav_utils.R | 696 +- lavaan-0.7-2/lavaan/R/lav_uvbv_2l_common.R |only lavaan-0.7-2/lavaan/R/lav_uvbv_common.R |only lavaan-0.7-2/lavaan/R/lav_uvord.R | 425 - lavaan-0.7-2/lavaan/R/lav_uvord_2l.R |only lavaan-0.7-2/lavaan/R/lav_uvreg.R | 276 lavaan-0.7-2/lavaan/R/lav_uvreg_2l.R |only lavaan-0.7-2/lavaan/R/xxx_efa.R | 205 lavaan-0.7-2/lavaan/R/xxx_lavaan.R | 758 +- lavaan-0.7-2/lavaan/R/xxx_lavaanList.R | 516 - lavaan-0.7-2/lavaan/R/xxx_sam.R | 881 +- lavaan-0.7-2/lavaan/R/zzz_OLDNAMES.R | 99 lavaan-0.7-2/lavaan/R/zzz_OLD_NONEXPORTED.R |only lavaan-0.7-2/lavaan/R/zzz_old_long_names.R |only lavaan-0.7-2/lavaan/README.md | 14 lavaan-0.7-2/lavaan/build/partial.rdb |binary lavaan-0.7-2/lavaan/inst/CITATION | 8 lavaan-0.7-2/lavaan/inst/rbm_sem.R |only lavaan-0.7-2/lavaan/inst/understanding_lavaan_internals.R | 47 lavaan-0.7-2/lavaan/man/Demo.growth.Rd | 2 lavaan-0.7-2/lavaan/man/Demo.twolevel.Rd | 3 lavaan-0.7-2/lavaan/man/bootstrap.Rd | 85 lavaan-0.7-2/lavaan/man/cfa.Rd | 45 lavaan-0.7-2/lavaan/man/efa.Rd | 104 lavaan-0.7-2/lavaan/man/estimator_iv.Rd |only lavaan-0.7-2/lavaan/man/figures/semex.pdf |binary lavaan-0.7-2/lavaan/man/figures/semex.svg | 40 lavaan-0.7-2/lavaan/man/figures/semex0.pdf |binary lavaan-0.7-2/lavaan/man/figures/semex0.svg | 40 lavaan-0.7-2/lavaan/man/fitMeasures.Rd | 170 lavaan-0.7-2/lavaan/man/getCov.Rd | 17 lavaan-0.7-2/lavaan/man/growth.Rd | 45 lavaan-0.7-2/lavaan/man/inspectSampleCov.Rd | 11 lavaan-0.7-2/lavaan/man/lavCor.Rd | 52 lavaan-0.7-2/lavaan/man/lavEffects.Rd |only lavaan-0.7-2/lavaan/man/lavInspect.Rd | 231 lavaan-0.7-2/lavaan/man/lavListInspect.Rd | 33 lavaan-0.7-2/lavaan/man/lavMatrixRepresentation.Rd | 19 lavaan-0.7-2/lavaan/man/lavNames.Rd | 22 lavaan-0.7-2/lavaan/man/lavOptions.Rd | 420 + lavaan-0.7-2/lavaan/man/lavPredict.Rd | 199 lavaan-0.7-2/lavaan/man/lavPredictY.Rd | 60 lavaan-0.7-2/lavaan/man/lavPredictY_cv.Rd | 34 lavaan-0.7-2/lavaan/man/lavResiduals.Rd | 115 lavaan-0.7-2/lavaan/man/lavResidualsY.Rd |only lavaan-0.7-2/lavaan/man/lavTables.Rd | 51 lavaan-0.7-2/lavaan/man/lavTablesFit.Rd | 8 lavaan-0.7-2/lavaan/man/lavTest.Rd | 79 lavaan-0.7-2/lavaan/man/lavTestLRT.Rd | 113 lavaan-0.7-2/lavaan/man/lavTestScore.Rd | 69 lavaan-0.7-2/lavaan/man/lavTestWald.Rd | 38 lavaan-0.7-2/lavaan/man/lav_constraints.Rd | 44 lavaan-0.7-2/lavaan/man/lav_data.Rd | 17 lavaan-0.7-2/lavaan/man/lav_export.Rd | 9 lavaan-0.7-2/lavaan/man/lav_export_estimation.Rd | 8 lavaan-0.7-2/lavaan/man/lav_func.Rd | 32 lavaan-0.7-2/lavaan/man/lav_label_code.Rd | 37 lavaan-0.7-2/lavaan/man/lav_long_names.Rd |only lavaan-0.7-2/lavaan/man/lav_matrix.Rd | 246 lavaan-0.7-2/lavaan/man/lav_model.Rd | 18 lavaan-0.7-2/lavaan/man/lav_model_plotinfo.Rd | 32 lavaan-0.7-2/lavaan/man/lav_partable.Rd | 102 lavaan-0.7-2/lavaan/man/lav_plotinfo_positions.Rd | 27 lavaan-0.7-2/lavaan/man/lav_plotinfo_rgraph.Rd | 30 lavaan-0.7-2/lavaan/man/lav_plotinfo_svgcode.Rd | 48 lavaan-0.7-2/lavaan/man/lav_plotinfo_tikzcode.Rd | 24 lavaan-0.7-2/lavaan/man/lav_samplestats.Rd | 14 lavaan-0.7-2/lavaan/man/lav_scores.Rd | 32 lavaan-0.7-2/lavaan/man/lavaan-class.Rd | 123 lavaan-0.7-2/lavaan/man/lavaan-deprecated.Rd | 4 lavaan-0.7-2/lavaan/man/lavaan.Rd | 90 lavaan-0.7-2/lavaan/man/lavaanList-class.Rd | 25 lavaan-0.7-2/lavaan/man/lavaanList.Rd | 75 lavaan-0.7-2/lavaan/man/lavplot.Rd | 56 lavaan-0.7-2/lavaan/man/mimic.Rd |only lavaan-0.7-2/lavaan/man/model.syntax.Rd | 419 - lavaan-0.7-2/lavaan/man/modificationIndices.Rd | 50 lavaan-0.7-2/lavaan/man/open_parser.Rd |only lavaan-0.7-2/lavaan/man/parameterEstimates.Rd | 90 lavaan-0.7-2/lavaan/man/sam.Rd | 150 lavaan-0.7-2/lavaan/man/sem.Rd | 47 lavaan-0.7-2/lavaan/man/simulateData.Rd | 155 lavaan-0.7-2/lavaan/man/standardizedSolution.Rd | 115 lavaan-0.7-2/lavaan/man/summary.efaList.Rd | 45 lavaan-0.7-2/lavaan/man/varTable.Rd | 19 322 files changed, 63869 insertions(+), 46131 deletions(-)
Title: Geometrically Designed Spline Regression
Description: Spline regression, generalized additive models and
component-wise gradient boosting utilizing geometrically designed
(GeD) splines. GeDS regression is a non-parametric method inspired by
geometric principles, for fitting spline regression models with
variable knots in one or two independent variables. It efficiently
estimates the number of knots and their positions, as well as the
spline order, assuming the response variable follows a distribution
from the exponential family. GeDS models integrate the broader
category of generalized (non-)linear models, offering a flexible
approach to model complex relationships. A description of the
method can be found in Kaishev et al. (2016)
<doi:10.1007/s00180-015-0621-7> and Dimitrova et al. (2023)
<doi:10.1016/j.amc.2022.127493>. Further extending its capabilities,
GeDS's implementation includes generalized additive models (GAM) and
functional gradient boosting (FGB), enabling versatile multivariate
predictor modeling, as discussed in [...truncated...]
Author: Dimitrina S. Dimitrova [aut],
Vladimir K. Kaishev [aut],
Andrea Lattuada [aut],
Emilio L. Saenz Guillen [aut, cre],
Richard J. Verrall [aut]
Maintainer: Emilio L. Saenz Guillen
<emilioluissaenzguillen@gmail.com>
Diff between GeDS versions 0.3.4 dated 2026-07-16 and 0.3.5 dated 2026-07-16
DESCRIPTION | 8 ++--- MD5 | 12 ++++---- R/predict_helpers.R | 56 +++++++++++++++++++++++++++++++------- inst/doc/jss_article.pdf |binary inst/doc/rpubs_GeDSgam.html | 2 - inst/extdata/jss_article.pdf |binary tests/testthat/test-predictions.R | 13 +++----- 7 files changed, 62 insertions(+), 29 deletions(-)
Title: Finite Mixture Parametrization
Description: A parametrization framework for finite mixture distribution
using S4 objects. Density, cumulative density, quantile and
simulation functions are defined. Currently normal, Tukey g-&-h,
skew-normal and skew-t distributions are well tested. The gamma,
negative binomial distributions are being tested.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between fmx versions 0.1.3 dated 2025-03-15 and 0.2.0 dated 2026-07-16
fmx-0.1.3/fmx/R/Kolmogorov_dist.R |only fmx-0.1.3/fmx/R/MaP.R |only fmx-0.1.3/fmx/R/create_fmx.R |only fmx-0.1.3/fmx/R/fitdistrplus.R |only fmx-0.1.3/fmx/R/fmx.R |only fmx-0.1.3/fmx/R/fmx_diagnosis.R |only fmx-0.1.3/fmx/R/fmx_repar.R |only fmx-0.1.3/fmx/R/methods_fmx.R |only fmx-0.1.3/fmx/R/mixsmsn.R |only fmx-0.1.3/fmx/R/mixtools.R |only fmx-0.1.3/fmx/man/Kolmogorov_dist.Rd |only fmx-0.1.3/fmx/man/MaP.Rd |only fmx-0.1.3/fmx/man/as.fmx.Normal.Rd |only fmx-0.1.3/fmx/man/as.fmx.Skew.normal.Rd |only fmx-0.1.3/fmx/man/as.fmx.Skew.t.Rd |only fmx-0.1.3/fmx/man/as.fmx.fitdist.Rd |only fmx-0.1.3/fmx/man/as.fmx.mixEM.Rd |only fmx-0.1.3/fmx/man/as.fmx.t.Rd |only fmx-0.1.3/fmx/man/fmx_diagnosis.Rd |only fmx-0.1.3/fmx/man/logLik.fitdist.Rd |only fmx-0.1.3/fmx/man/logLik.mixEM.Rd |only fmx-0.1.3/fmx/man/mixEM_pars.Rd |only fmx-0.1.3/fmx/man/nobs.fitdist.Rd |only fmx-0.1.3/fmx/man/sort.mixEM.Rd |only fmx-0.1.3/fmx/man/sort_mixsmsn.Rd |only fmx-0.1.3/fmx/man/sub-fmx-ANY-ANY-ANY-method.Rd |only fmx-0.2.0/fmx/DESCRIPTION | 27 - fmx-0.2.0/fmx/MD5 | 104 ++---- fmx-0.2.0/fmx/NAMESPACE | 61 ---- fmx-0.2.0/fmx/R/0PACKAGE.R | 2 fmx-0.2.0/fmx/R/0S4.R | 188 +++++++++++- fmx-0.2.0/fmx/R/S3.R |only fmx-0.2.0/fmx/R/approxdens.R | 19 - fmx-0.2.0/fmx/R/as.fmx.R | 357 ------------------------ fmx-0.2.0/fmx/R/dist_ext.R | 7 fmx-0.2.0/fmx/R/dpqr.R |only fmx-0.2.0/fmx/R/fmx2dbl.R |only fmx-0.2.0/fmx/R/fmx_constraint.R | 52 --- fmx-0.2.0/fmx/R/mlogis.R | 100 +----- fmx-0.2.0/fmx/R/moment.R | 39 -- fmx-0.2.0/fmx/README.md |only fmx-0.2.0/fmx/inst |only fmx-0.2.0/fmx/man/approxdens.Rd | 10 fmx-0.2.0/fmx/man/as.fmx.Rd | 8 fmx-0.2.0/fmx/man/coef.fmx.Rd | 16 - fmx-0.2.0/fmx/man/confint.fmx.Rd | 12 fmx-0.2.0/fmx/man/dbl2fmx.Rd | 8 fmx-0.2.0/fmx/man/dfmx.Rd | 106 +------ fmx-0.2.0/fmx/man/distArgs.Rd | 2 fmx-0.2.0/fmx/man/distType.Rd | 2 fmx-0.2.0/fmx/man/dist_logtrans.Rd | 2 fmx-0.2.0/fmx/man/fmx-class.Rd | 28 + fmx-0.2.0/fmx/man/fmx-package.Rd | 12 fmx-0.2.0/fmx/man/fmx.Rd | 19 - fmx-0.2.0/fmx/man/fmx2dbl.Rd | 18 - fmx-0.2.0/fmx/man/fmx_constraint.Rd | 33 -- fmx-0.2.0/fmx/man/getTeX.Rd | 17 - fmx-0.2.0/fmx/man/logLik.fmx.Rd | 18 - fmx-0.2.0/fmx/man/mlogis.Rd | 76 +---- fmx-0.2.0/fmx/man/moment2fmx.Rd | 27 - fmx-0.2.0/fmx/man/moment_fmx.Rd | 12 fmx-0.2.0/fmx/man/nobs.fmx.Rd |only fmx-0.2.0/fmx/man/npar.fmx.Rd | 4 fmx-0.2.0/fmx/man/print.fmx.Rd | 4 fmx-0.2.0/fmx/man/qfmx_interval.Rd | 10 fmx-0.2.0/fmx/man/show-fmx-method.Rd | 4 fmx-0.2.0/fmx/man/sub-.fmx.Rd |only fmx-0.2.0/fmx/man/user_constraint.Rd | 24 - fmx-0.2.0/fmx/man/vcov.fmx.Rd | 20 - 69 files changed, 469 insertions(+), 979 deletions(-)
Title: Partial Linear Single Index Models for Environmental Mixture
Analysis
Description: Collection of ancillary functions and utilities for Partial Linear Single Index Models for Environmental mixture analyses, which currently provides functions for scalar outcomes. The outputs of these functions include the single index function, single index coefficients, partial linear coefficients, mixture overall effect, exposure main and interaction effects, and differences of quartile effects. In the future, we will add functions for binary, ordinal, Poisson, survival, and longitudinal outcomes, as well as models for time-dependent exposures. See Wang et al (2020) <doi:10.1186/s12940-020-00644-4> for an overview.
Author: Yuyan Wang [aut, cre] ,
Mengling Liu [aut, ctb],
Myeonggyun Lee [ctb]
Maintainer: Yuyan Wang <yuyan.wang@nyumc.org>
Diff between EPLSIM versions 0.1.1 dated 2025-05-05 and 1.0.0 dated 2026-07-16
EPLSIM-0.1.1/EPLSIM/tests/testthat/test.plsi.lr.v1.R |only EPLSIM-0.1.1/EPLSIM/vignettes/example.plsi.lr.v1.R |only EPLSIM-1.0.0/EPLSIM/DESCRIPTION | 14 EPLSIM-1.0.0/EPLSIM/MD5 | 71 +- EPLSIM-1.0.0/EPLSIM/NAMESPACE | 7 EPLSIM-1.0.0/EPLSIM/NEWS.md |only EPLSIM-1.0.0/EPLSIM/R/e.interaction.plot.R | 143 +++-- EPLSIM-1.0.0/EPLSIM/R/e.main.plot.R | 136 +++-- EPLSIM-1.0.0/EPLSIM/R/interquartile.quartile.plot.R | 94 ++- EPLSIM-1.0.0/EPLSIM/R/mixture.overall.plot.R | 92 ++- EPLSIM-1.0.0/EPLSIM/R/plsi.log.auto.R |only EPLSIM-1.0.0/EPLSIM/R/plsi.logistic.auto.R |only EPLSIM-1.0.0/EPLSIM/R/plsi.lr.auto.R |only EPLSIM-1.0.0/EPLSIM/R/plsi.lr.v1.R | 65 +- EPLSIM-1.0.0/EPLSIM/R/plsi.lr.v2.R |only EPLSIM-1.0.0/EPLSIM/R/si.coef.plot.R | 33 - EPLSIM-1.0.0/EPLSIM/R/si.fun.plot.R | 104 +++- EPLSIM-1.0.0/EPLSIM/inst/doc/my-vignette.R | 89 +++ EPLSIM-1.0.0/EPLSIM/inst/doc/my-vignette.Rmd | 211 ++++++++ EPLSIM-1.0.0/EPLSIM/inst/doc/my-vignette.html | 258 +++++++++- EPLSIM-1.0.0/EPLSIM/man/e.interaction.plot.Rd | 58 +- EPLSIM-1.0.0/EPLSIM/man/e.main.plot.Rd | 59 +- EPLSIM-1.0.0/EPLSIM/man/interquartile.quartile.plot.Rd | 39 - EPLSIM-1.0.0/EPLSIM/man/mixture.overall.plot.Rd | 38 - EPLSIM-1.0.0/EPLSIM/man/plsi.log.auto.Rd |only EPLSIM-1.0.0/EPLSIM/man/plsi.logistic.auto.Rd |only EPLSIM-1.0.0/EPLSIM/man/plsi.lr.auto.Rd |only EPLSIM-1.0.0/EPLSIM/man/plsi.lr.v1.Rd | 3 EPLSIM-1.0.0/EPLSIM/man/plsi.lr.v2.Rd |only EPLSIM-1.0.0/EPLSIM/man/si.coef.plot.Rd | 25 EPLSIM-1.0.0/EPLSIM/man/si.fun.plot.Rd | 52 +- EPLSIM-1.0.0/EPLSIM/tests/testthat.R | 1 EPLSIM-1.0.0/EPLSIM/tests/testthat/test.plot.functions.R |only EPLSIM-1.0.0/EPLSIM/tests/testthat/test.vignette.R |only EPLSIM-1.0.0/EPLSIM/vignettes/example.e.interaction.plot.R | 39 - EPLSIM-1.0.0/EPLSIM/vignettes/example.e.main.plot.R | 35 - EPLSIM-1.0.0/EPLSIM/vignettes/example.interquartile.quartile.plot.R | 31 - EPLSIM-1.0.0/EPLSIM/vignettes/example.mixture.overall.plot.R | 31 - EPLSIM-1.0.0/EPLSIM/vignettes/example.plsi.log.auto.R |only EPLSIM-1.0.0/EPLSIM/vignettes/example.plsi.logistic.auto.R |only EPLSIM-1.0.0/EPLSIM/vignettes/example.plsi.lr.auto.R |only EPLSIM-1.0.0/EPLSIM/vignettes/example.plsi.lr.v2.R |only EPLSIM-1.0.0/EPLSIM/vignettes/example.si.coef.plot.R | 33 - EPLSIM-1.0.0/EPLSIM/vignettes/example.si.fun.plot.R | 30 - EPLSIM-1.0.0/EPLSIM/vignettes/my-vignette.Rmd | 211 ++++++++ 45 files changed, 1563 insertions(+), 439 deletions(-)
Title: Data Analysis with Ceiling and/or Floor Data
Description: An implementation of data analytic methods in R for analyses for data with ceiling/floor effects. The package currently includes functions for mean/variance estimation and mean comparison tests. Implemented methods are from Aitkin (1964) <doi:10.1007/BF02289723> and Liu & Wang (2021) <doi:10.3758/s13428-020-01407-2>.
Author: Qimin Liu [aut, cre],
Lijuan Wang [aut],
Lauren Trichtinger [aut],
Grace Murray [ctb]
Maintainer: Qimin Liu <Qliuacademia@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2018-02-06
Diff between DACF versions 1.0.0 dated 2018-02-06 and 1.1.0 dated 2026-07-16
DESCRIPTION | 24 - MD5 | 39 + NAMESPACE | 23 + NEWS.md |only R/DACF-package.R | 4 R/Qi_data_males.R |only R/cf_correction.R |only R/ggmcfe.R |only R/lw.f.star.R | 39 + R/lw.t.test.R | 59 +- R/rec.mean.var.R | 67 +-- build/partial.rdb |only build/vignette.rds |binary data |only inst/doc/DACF-vignette.R | 89 +++- inst/doc/DACF-vignette.Rmd | 119 ++++- inst/doc/DACF-vignette.html | 912 +++++++++++++++++++++++++++++++++++--------- man/DACF-package.Rd |only man/Qi_data_males.Rd |only man/cf_correction.Rd |only man/ggm_cfe.Rd |only man/lw.f.star.Rd | 12 man/lw.t.test.Rd | 14 man/plot_censoring.Rd |only man/rec.mean.var.Rd | 12 vignettes/DACF-vignette.Rmd | 119 ++++- 26 files changed, 1192 insertions(+), 340 deletions(-)
Title: Functions to Streamline Statistical Analysis and Reporting
Description: Built upon popular R packages such as 'ggstatsplot' and 'ARTool', this collection offers a wide array of tools for simplifying reproducible analyses, generating high-quality visualizations, and producing 'APA'-compliant outputs. The primary goal of this package is to significantly reduce repetitive coding efforts, allowing you to focus on interpreting results. Whether you're dealing with ANOVA assumptions, reporting effect sizes, or creating publication-ready visualizations, this package makes these tasks easier.
Author: Mark Colley [aut, cre, cph]
Maintainer: Mark Colley <mark.colley@yahoo.de>
Diff between colleyRstats versions 0.1.2 dated 2026-07-06 and 0.1.3 dated 2026-07-16
colleyRstats-0.1.2/colleyRstats/man/data-the-data-frame.Rd |only colleyRstats-0.1.3/colleyRstats/DESCRIPTION | 6 colleyRstats-0.1.3/colleyRstats/MD5 | 52 - colleyRstats-0.1.3/colleyRstats/NEWS.md | 38 + colleyRstats-0.1.3/colleyRstats/R/mixed-models.R | 8 colleyRstats-0.1.3/colleyRstats/R/paper.R | 2 colleyRstats-0.1.3/colleyRstats/R/pipeline.R | 4 colleyRstats-0.1.3/colleyRstats/R/plotting.R | 44 + colleyRstats-0.1.3/colleyRstats/R/reporting.R | 27 colleyRstats-0.1.3/colleyRstats/R/utils.R | 83 ++ colleyRstats-0.1.3/colleyRstats/README.md | 48 - colleyRstats-0.1.3/colleyRstats/build/vignette.rds |binary colleyRstats-0.1.3/colleyRstats/inst/WORDLIST | 293 +++------- colleyRstats-0.1.3/colleyRstats/inst/doc/analyzing-a-user-study.R |only colleyRstats-0.1.3/colleyRstats/inst/doc/analyzing-a-user-study.Rmd |only colleyRstats-0.1.3/colleyRstats/inst/doc/analyzing-a-user-study.html |only colleyRstats-0.1.3/colleyRstats/inst/doc/choosing-a-test.html | 36 - colleyRstats-0.1.3/colleyRstats/inst/doc/getting-started.Rmd | 13 colleyRstats-0.1.3/colleyRstats/inst/doc/getting-started.html | 18 colleyRstats-0.1.3/colleyRstats/inst/doc/overleaf.html | 10 colleyRstats-0.1.3/colleyRstats/man/not_empty.Rd | 5 colleyRstats-0.1.3/colleyRstats/man/rFromNPAV.Rd | 7 colleyRstats-0.1.3/colleyRstats/man/remove_outliers_REI.Rd | 4 colleyRstats-0.1.3/colleyRstats/man/replace_values.Rd |only colleyRstats-0.1.3/colleyRstats/man/reshape_data.Rd | 16 colleyRstats-0.1.3/colleyRstats/tests/testthat/test-mixed-models.R | 6 colleyRstats-0.1.3/colleyRstats/tests/testthat/test-plotting.R | 35 + colleyRstats-0.1.3/colleyRstats/tests/testthat/test-utils.R | 52 + colleyRstats-0.1.3/colleyRstats/vignettes/analyzing-a-user-study.Rmd |only colleyRstats-0.1.3/colleyRstats/vignettes/getting-started.Rmd | 13 30 files changed, 488 insertions(+), 332 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Bryce Mecum [aut],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb], [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 24.0.0 dated 2026-04-29 and 25.0.0 dated 2026-07-16
arrow-24.0.0/arrow/R/reexports-bit64.R |only arrow-24.0.0/arrow/tools/checksums/r-libarrow-darwin-arm64-24.0.0.zip.sha512 |only arrow-24.0.0/arrow/tools/checksums/r-libarrow-darwin-x86_64-24.0.0.zip.sha512 |only arrow-24.0.0/arrow/tools/checksums/r-libarrow-linux-x86_64-24.0.0.zip.sha512 |only arrow-24.0.0/arrow/tools/checksums/r-libarrow-windows-x86_64-24.0.0.zip.sha512 |only arrow-24.0.0/arrow/tools/cpp/CMakeLists.txt-e |only arrow-24.0.0/arrow/tools/cpp/src/arrow/util/bpacking_simd_avx2.cc |only arrow-24.0.0/arrow/tools/cpp/src/arrow/util/bpacking_simd_default.cc |only arrow-25.0.0/arrow/DESCRIPTION | 14 arrow-25.0.0/arrow/MD5 | 545 +++---- arrow-25.0.0/arrow/NAMESPACE | 5 arrow-25.0.0/arrow/NEWS.md | 42 arrow-25.0.0/arrow/R/arrow-info.R | 6 arrow-25.0.0/arrow/R/arrow-package.R | 20 arrow-25.0.0/arrow/R/arrow-tabular.R | 6 arrow-25.0.0/arrow/R/arrowExports.R | 20 arrow-25.0.0/arrow/R/dataset-format.R | 7 arrow-25.0.0/arrow/R/dataset-write.R | 30 arrow-25.0.0/arrow/R/dplyr-collect.R | 2 arrow-25.0.0/arrow/R/dplyr-funcs-conditional.R | 2 arrow-25.0.0/arrow/R/dplyr-funcs-datetime.R | 4 arrow-25.0.0/arrow/R/dplyr-funcs-doc.R | 80 - arrow-25.0.0/arrow/R/dplyr-group-by.R | 8 arrow-25.0.0/arrow/R/duckdb.R | 10 arrow-25.0.0/arrow/R/feather.R | 2 arrow-25.0.0/arrow/R/field.R | 47 arrow-25.0.0/arrow/R/metadata.R | 6 arrow-25.0.0/arrow/R/schema.R | 12 arrow-25.0.0/arrow/R/type.R | 21 arrow-25.0.0/arrow/R/util.R | 2 arrow-25.0.0/arrow/README.md | 1 arrow-25.0.0/arrow/inst/build_arrow_static.sh | 7 arrow-25.0.0/arrow/man/CsvReadOptions.Rd | 4 arrow-25.0.0/arrow/man/Field-class.Rd | 16 arrow-25.0.0/arrow/man/Field.Rd | 6 arrow-25.0.0/arrow/man/JsonFileFormat.Rd | 4 arrow-25.0.0/arrow/man/Schema-class.Rd | 2 arrow-25.0.0/arrow/man/acero.Rd | 352 ++-- arrow-25.0.0/arrow/man/arrow-package.Rd | 1 arrow-25.0.0/arrow/man/arrow_info.Rd | 3 arrow-25.0.0/arrow/man/csv_convert_options.Rd | 4 arrow-25.0.0/arrow/man/csv_read_options.Rd | 8 arrow-25.0.0/arrow/man/data-type.Rd | 15 arrow-25.0.0/arrow/man/enums.Rd | 33 arrow-25.0.0/arrow/man/infer_type.Rd | 3 arrow-25.0.0/arrow/man/reexports.Rd | 8 arrow-25.0.0/arrow/man/vctrs_extension_array.Rd | 4 arrow-25.0.0/arrow/src/array_to_vector.cpp | 35 arrow-25.0.0/arrow/src/arrowExports.cpp | 54 arrow-25.0.0/arrow/src/compute-exec.cpp | 6 arrow-25.0.0/arrow/src/field.cpp | 43 arrow-25.0.0/arrow/src/filesystem.cpp | 31 arrow-25.0.0/arrow/src/r_to_arrow.cpp | 12 arrow-25.0.0/arrow/src/type_infer.cpp | 4 arrow-25.0.0/arrow/tests/testthat/helper-arrow.R | 29 arrow-25.0.0/arrow/tests/testthat/test-Array.R | 48 arrow-25.0.0/arrow/tests/testthat/test-Table.R | 16 arrow-25.0.0/arrow/tests/testthat/test-arrow-info.R | 4 arrow-25.0.0/arrow/tests/testthat/test-dataset-csv.R | 6 arrow-25.0.0/arrow/tests/testthat/test-dataset-write.R | 10 arrow-25.0.0/arrow/tests/testthat/test-dplyr-filter.R | 27 arrow-25.0.0/arrow/tests/testthat/test-dplyr-select.R | 13 arrow-25.0.0/arrow/tests/testthat/test-duckdb.R | 18 arrow-25.0.0/arrow/tests/testthat/test-field.R | 55 arrow-25.0.0/arrow/tests/testthat/test-metadata.R | 46 arrow-25.0.0/arrow/tests/testthat/test-type.R | 28 arrow-25.0.0/arrow/tools/checksums/r-libarrow-darwin-arm64-25.0.0.zip.sha512 |only arrow-25.0.0/arrow/tools/checksums/r-libarrow-darwin-x86_64-25.0.0.zip.sha512 |only arrow-25.0.0/arrow/tools/checksums/r-libarrow-linux-arm64-25.0.0.zip.sha512 |only arrow-25.0.0/arrow/tools/checksums/r-libarrow-linux-x86_64-25.0.0.zip.sha512 |only arrow-25.0.0/arrow/tools/checksums/r-libarrow-windows-x86_64-25.0.0.zip.sha512 |only arrow-25.0.0/arrow/tools/cpp/CMakeLists.txt | 7 arrow-25.0.0/arrow/tools/cpp/cmake_modules/BuildUtils.cmake | 1 arrow-25.0.0/arrow/tools/cpp/cmake_modules/DefineOptions.cmake | 26 arrow-25.0.0/arrow/tools/cpp/cmake_modules/FindRapidJSONAlt.cmake | 3 arrow-25.0.0/arrow/tools/cpp/cmake_modules/SetupCxxFlags.cmake | 32 arrow-25.0.0/arrow/tools/cpp/cmake_modules/ThirdpartyToolchain.cmake | 733 ++++++---- arrow-25.0.0/arrow/tools/cpp/cmake_modules/google-cloud-cpp-bcrypt-mingw.patch |only arrow-25.0.0/arrow/tools/cpp/cmake_modules/google-cloud-cpp-reproducible-builds.patch |only arrow-25.0.0/arrow/tools/cpp/cmake_modules/protobuf-emscripten.patch |only arrow-25.0.0/arrow/tools/cpp/meson.build | 2 arrow-25.0.0/arrow/tools/cpp/src/arrow/CMakeLists.txt | 79 - arrow-25.0.0/arrow/tools/cpp/src/arrow/acero/order_by_node.cc | 2 arrow-25.0.0/arrow/tools/cpp/src/arrow/acero/source_node.cc | 2 arrow-25.0.0/arrow/tools/cpp/src/arrow/adapters/orc/util.cc | 36 arrow-25.0.0/arrow/tools/cpp/src/arrow/array/array_dict.cc | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/array/array_dict.h | 5 arrow-25.0.0/arrow/tools/cpp/src/arrow/array/builder_dict.h | 90 - arrow-25.0.0/arrow/tools/cpp/src/arrow/array/concatenate.cc | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/array/data.cc | 4 arrow-25.0.0/arrow/tools/cpp/src/arrow/array/util.cc | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/array/validate.cc | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/buffer.cc | 14 arrow-25.0.0/arrow/tools/cpp/src/arrow/buffer.h | 2 arrow-25.0.0/arrow/tools/cpp/src/arrow/builder.cc | 26 arrow-25.0.0/arrow/tools/cpp/src/arrow/c/bridge.cc | 5 arrow-25.0.0/arrow/tools/cpp/src/arrow/chunked_array.cc | 14 arrow-25.0.0/arrow/tools/cpp/src/arrow/chunked_array.h | 14 arrow-25.0.0/arrow/tools/cpp/src/arrow/compare.cc | 258 +-- arrow-25.0.0/arrow/tools/cpp/src/arrow/compare.h | 49 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/CMakeLists.txt | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/api_scalar.cc | 1 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/api_scalar.h | 9 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/api_vector.cc | 53 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/api_vector.h | 113 + arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/function_internal.h | 28 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/aggregate_basic.cc | 2 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/aggregate_mode.cc | 1 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/aggregate_pivot.cc | 5 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/codegen_internal.h | 16 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/hash_aggregate.cc | 14 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/hash_aggregate_internal.h | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_arithmetic.cc | 20 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_cast_string.cc | 14 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_compare.cc | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_hash.cc | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_rank.cc | 40 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_replace.cc | 8 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_select_k.cc | 553 ++++--- arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_sort.cc | 99 - arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_sort_internal.h | 54 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/ordering.cc | 33 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/ordering.h | 23 arrow-25.0.0/arrow/tools/cpp/src/arrow/compute/registry.cc | 26 arrow-25.0.0/arrow/tools/cpp/src/arrow/csv/options.h | 4 arrow-25.0.0/arrow/tools/cpp/src/arrow/csv/parser.cc | 18 arrow-25.0.0/arrow/tools/cpp/src/arrow/csv/reader.cc | 10 arrow-25.0.0/arrow/tools/cpp/src/arrow/dataset/file_parquet.cc | 63 arrow-25.0.0/arrow/tools/cpp/src/arrow/engine/substrait/relation_internal.cc | 20 arrow-25.0.0/arrow/tools/cpp/src/arrow/engine/substrait/util_internal.h | 4 arrow-25.0.0/arrow/tools/cpp/src/arrow/filesystem/CMakeLists.txt | 2 arrow-25.0.0/arrow/tools/cpp/src/arrow/filesystem/filesystem.cc | 32 arrow-25.0.0/arrow/tools/cpp/src/arrow/filesystem/filesystem.h | 88 + arrow-25.0.0/arrow/tools/cpp/src/arrow/filesystem/s3_test_util.cc | 13 arrow-25.0.0/arrow/tools/cpp/src/arrow/filesystem/s3_test_util.h | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/filesystem/s3fs.cc | 133 + arrow-25.0.0/arrow/tools/cpp/src/arrow/filesystem/s3fs.h | 18 arrow-25.0.0/arrow/tools/cpp/src/arrow/filesystem/util_internal.h | 16 arrow-25.0.0/arrow/tools/cpp/src/arrow/flight/sql/example/sqlite_server.cc | 36 arrow-25.0.0/arrow/tools/cpp/src/arrow/flight/sql/test_app_cli.cc | 14 arrow-25.0.0/arrow/tools/cpp/src/arrow/flight/test_util.cc | 14 arrow-25.0.0/arrow/tools/cpp/src/arrow/flight/transport/grpc/util_internal.h | 23 arrow-25.0.0/arrow/tools/cpp/src/arrow/gpu/cuda_memory.cc | 26 arrow-25.0.0/arrow/tools/cpp/src/arrow/gpu/cuda_memory.h | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/integration/json_internal.cc | 62 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/buffered.cc | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/caching.cc | 9 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/compressed.cc | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/concurrency.h | 14 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/file.cc | 36 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/file.h | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/hdfs.cc | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/interfaces.cc | 45 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/interfaces.h | 39 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/memory.cc | 50 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/memory.h | 9 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/slow.cc | 13 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/slow.h | 4 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/stdio.cc | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/test_common.cc | 13 arrow-25.0.0/arrow/tools/cpp/src/arrow/io/type_fwd.h | 1 arrow-25.0.0/arrow/tools/cpp/src/arrow/ipc/CMakeLists.txt | 1 arrow-25.0.0/arrow/tools/cpp/src/arrow/ipc/feather.cc | 17 arrow-25.0.0/arrow/tools/cpp/src/arrow/ipc/message.cc | 241 +-- arrow-25.0.0/arrow/tools/cpp/src/arrow/ipc/message.h | 16 arrow-25.0.0/arrow/tools/cpp/src/arrow/ipc/metadata_internal.cc | 63 arrow-25.0.0/arrow/tools/cpp/src/arrow/ipc/metadata_internal.h | 22 arrow-25.0.0/arrow/tools/cpp/src/arrow/ipc/options.h | 4 arrow-25.0.0/arrow/tools/cpp/src/arrow/ipc/reader.cc | 207 +- arrow-25.0.0/arrow/tools/cpp/src/arrow/ipc/reader.h | 5 arrow-25.0.0/arrow/tools/cpp/src/arrow/ipc/reader_internal.h | 16 arrow-25.0.0/arrow/tools/cpp/src/arrow/ipc/writer.cc | 24 arrow-25.0.0/arrow/tools/cpp/src/arrow/memory_pool.cc | 19 arrow-25.0.0/arrow/tools/cpp/src/arrow/memory_pool_benchmark.cc | 1 arrow-25.0.0/arrow/tools/cpp/src/arrow/memory_pool_internal.h | 26 arrow-25.0.0/arrow/tools/cpp/src/arrow/memory_pool_mimalloc.cc |only arrow-25.0.0/arrow/tools/cpp/src/arrow/memory_pool_test.h | 8 arrow-25.0.0/arrow/tools/cpp/src/arrow/meson.build | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/record_batch.cc | 1 arrow-25.0.0/arrow/tools/cpp/src/arrow/record_batch.h | 15 arrow-25.0.0/arrow/tools/cpp/src/arrow/sparse_tensor.cc | 16 arrow-25.0.0/arrow/tools/cpp/src/arrow/sparse_tensor.h | 8 arrow-25.0.0/arrow/tools/cpp/src/arrow/stl_allocator.h | 14 arrow-25.0.0/arrow/tools/cpp/src/arrow/table.cc | 9 arrow-25.0.0/arrow/tools/cpp/src/arrow/table.h | 12 arrow-25.0.0/arrow/tools/cpp/src/arrow/tensor.cc | 180 +- arrow-25.0.0/arrow/tools/cpp/src/arrow/tensor.h | 4 arrow-25.0.0/arrow/tools/cpp/src/arrow/tensor_benchmark.cc | 41 arrow-25.0.0/arrow/tools/cpp/src/arrow/testing/examplefs.cc | 36 arrow-25.0.0/arrow/tools/cpp/src/arrow/testing/examplefs.h |only arrow-25.0.0/arrow/tools/cpp/src/arrow/testing/gtest_util.cc | 14 arrow-25.0.0/arrow/tools/cpp/src/arrow/testing/gtest_util.h | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/testing/math.cc | 84 - arrow-25.0.0/arrow/tools/cpp/src/arrow/testing/math.h | 13 arrow-25.0.0/arrow/tools/cpp/src/arrow/testing/util.cc | 17 arrow-25.0.0/arrow/tools/cpp/src/arrow/testing/util.h | 5 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/CMakeLists.txt | 11 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/align_util.cc | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/aligned_storage.h | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/async_util.cc | 15 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/base64.h | 3 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bit_util.h | 36 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bitmap_builders.cc | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bitmap_ops.cc | 30 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bitmap_ops.h | 24 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bpacking.cc | 29 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bpacking_benchmark.cc | 166 -- arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bpacking_dispatch_internal.h | 44 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bpacking_simd_128.cc |only arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bpacking_simd_128_alt.cc |only arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bpacking_simd_256.cc |only arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bpacking_simd_internal.h | 64 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bpacking_simd_kernel_internal.h | 186 -- arrow-25.0.0/arrow/tools/cpp/src/arrow/util/byte_stream_split_internal.cc | 57 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/byte_stream_split_internal.h | 44 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/converter.h | 2 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/cpu_info.cc | 474 ++---- arrow-25.0.0/arrow/tools/cpp/src/arrow/util/cpu_info.h | 39 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/decimal.cc | 20 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/dispatch_internal.h | 321 +++- arrow-25.0.0/arrow/tools/cpp/src/arrow/util/hashing.h | 34 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/logging.cc | 11 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/macros.h | 14 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/meson.build | 1 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/rle_bitmap_internal.h |only arrow-25.0.0/arrow/tools/cpp/src/arrow/util/rle_encoding_internal.h | 94 - arrow-25.0.0/arrow/tools/cpp/src/arrow/util/string_util.h | 1 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/thread_pool.cc | 62 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/ubsan.h | 18 arrow-25.0.0/arrow/tools/cpp/src/arrow/util/ulp_distance.cc |only arrow-25.0.0/arrow/tools/cpp/src/arrow/util/ulp_distance_internal.h |only arrow-25.0.0/arrow/tools/cpp/src/arrow/util/union_util.cc | 8 arrow-25.0.0/arrow/tools/cpp/src/arrow/vendored/base64.cpp | 81 - arrow-25.0.0/arrow/tools/cpp/src/arrow/vendored/datetime/date.h | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/vendored/datetime/ios.h | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/vendored/datetime/tz.h | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/vendored/datetime/tz_private.h | 6 arrow-25.0.0/arrow/tools/cpp/src/arrow/vendored/datetime/update.sh | 3 arrow-25.0.0/arrow/tools/cpp/src/generated/parquet_types.cpp | 692 +++++---- arrow-25.0.0/arrow/tools/cpp/src/generated/parquet_types.h | 545 ++++--- arrow-25.0.0/arrow/tools/cpp/src/generated/parquet_types.tcc | 347 +++- arrow-25.0.0/arrow/tools/cpp/src/parquet/CMakeLists.txt | 22 arrow-25.0.0/arrow/tools/cpp/src/parquet/arrow/fuzz_encoding_internal.cc | 79 - arrow-25.0.0/arrow/tools/cpp/src/parquet/arrow/fuzz_internal.cc | 5 arrow-25.0.0/arrow/tools/cpp/src/parquet/arrow/path_internal.cc | 140 + arrow-25.0.0/arrow/tools/cpp/src/parquet/arrow/reader.cc | 53 arrow-25.0.0/arrow/tools/cpp/src/parquet/arrow/schema.cc | 55 arrow-25.0.0/arrow/tools/cpp/src/parquet/arrow/writer.cc | 24 arrow-25.0.0/arrow/tools/cpp/src/parquet/bloom_filter.cc | 137 + arrow-25.0.0/arrow/tools/cpp/src/parquet/bloom_filter.h | 20 arrow-25.0.0/arrow/tools/cpp/src/parquet/bloom_filter_avx2.cc |only arrow-25.0.0/arrow/tools/cpp/src/parquet/bloom_filter_avx2_internal.h |only arrow-25.0.0/arrow/tools/cpp/src/parquet/bloom_filter_block_impl_internal.h |only arrow-25.0.0/arrow/tools/cpp/src/parquet/bloom_filter_reader.h | 2 arrow-25.0.0/arrow/tools/cpp/src/parquet/bloom_filter_writer.cc | 35 arrow-25.0.0/arrow/tools/cpp/src/parquet/column_io_benchmark.cc | 3 arrow-25.0.0/arrow/tools/cpp/src/parquet/column_page.h | 2 arrow-25.0.0/arrow/tools/cpp/src/parquet/column_reader.cc | 35 arrow-25.0.0/arrow/tools/cpp/src/parquet/column_reader.h | 10 arrow-25.0.0/arrow/tools/cpp/src/parquet/column_writer.cc | 22 arrow-25.0.0/arrow/tools/cpp/src/parquet/decoder.cc | 98 - arrow-25.0.0/arrow/tools/cpp/src/parquet/encoder.cc | 10 arrow-25.0.0/arrow/tools/cpp/src/parquet/encryption/file_key_unwrapper.cc | 6 arrow-25.0.0/arrow/tools/cpp/src/parquet/encryption/file_system_key_material_store.cc | 1 arrow-25.0.0/arrow/tools/cpp/src/parquet/encryption/internal_file_decryptor.h | 1 arrow-25.0.0/arrow/tools/cpp/src/parquet/encryption/key_toolkit_internal.cc | 3 arrow-25.0.0/arrow/tools/cpp/src/parquet/file_reader.cc | 20 arrow-25.0.0/arrow/tools/cpp/src/parquet/geospatial/util_internal.cc | 8 arrow-25.0.0/arrow/tools/cpp/src/parquet/level_comparison.cc | 29 arrow-25.0.0/arrow/tools/cpp/src/parquet/metadata.cc | 76 - arrow-25.0.0/arrow/tools/cpp/src/parquet/page_index.cc | 33 arrow-25.0.0/arrow/tools/cpp/src/parquet/parquet.thrift | 217 ++ arrow-25.0.0/arrow/tools/cpp/src/parquet/platform.cc | 1 arrow-25.0.0/arrow/tools/cpp/src/parquet/platform.h | 4 arrow-25.0.0/arrow/tools/cpp/src/parquet/properties.cc | 10 arrow-25.0.0/arrow/tools/cpp/src/parquet/properties.h | 55 arrow-25.0.0/arrow/tools/cpp/src/parquet/schema.h | 16 arrow-25.0.0/arrow/tools/cpp/src/parquet/statistics.cc | 58 arrow-25.0.0/arrow/tools/cpp/src/parquet/statistics.h | 1 arrow-25.0.0/arrow/tools/cpp/src/parquet/thrift_internal.h | 40 arrow-25.0.0/arrow/tools/cpp/src/parquet/types.cc | 26 arrow-25.0.0/arrow/tools/cpp/src/parquet/types.h | 12 arrow-25.0.0/arrow/tools/cpp/subprojects/boost.wrap | 1 arrow-25.0.0/arrow/tools/cpp/thirdparty/versions.txt | 35 arrow-25.0.0/arrow/tools/cpp/vcpkg.json | 4 arrow-25.0.0/arrow/tools/dotenv | 6 arrow-25.0.0/arrow/tools/nixlibs.R | 46 287 files changed, 7214 insertions(+), 4165 deletions(-)
Title: Retrieving and Analyzing Air Quality and Weather Data from ARPA
Lombardia
Description: Contains functions for retrieving, managing, and analyzing air quality and weather data from the Regione Lombardia open database (<https://www.dati.lombardia.it/>).
Data are collected by ARPA Lombardia (Lombardia Environmental Protection Agency), Italy, through its ground monitoring network (<https://www.dati.lombardia.it/stories/s/auv9-c2sj>).
See the website <https://www.arpalombardia.it/> for further information on ARPA Lombardia's activities and history.
Data quality (e.g., missing values, extreme values, and graphical mapping) has been checked in collaboration with members of ARPA Lombardia's air quality control office.
The package provides observations since 1989 (for weather) and 1968 (for air quality), and these data are updated daily by the regional agency.
A full description of the package is available in the companion paper Maranzano \& Algieri (2024), "ARPALData: an R package for retrieving and analyzing air quality
and weather data from ARPA Lombardia [...truncated...]
Author: Paolo Maranzano [aut, cre, cph] ,
Andrea Algieri [aut, cph]
Maintainer: Paolo Maranzano <pmaranzano.ricercastatistica@gmail.com>
Diff between ARPALData versions 2.0.0 dated 2026-06-22 and 2.0.1 dated 2026-07-16
DESCRIPTION | 6 +++--- MD5 | 21 +++++++++++++++++---- R/AQ_metadata_reshape.R | 16 ++++++---------- R/ARPAL_extdata_path.R |only R/get_ARPA_Lombardia_zoning.R | 23 +++++------------------ R/get_Lombardia_geospatial.R | 17 +++++------------ build |only inst/doc |only inst/extdata |only vignettes |only 10 files changed, 36 insertions(+), 47 deletions(-)
Title: Tukey g-&-h Distribution
Description: Density, cumulative density, quantile and
simulation of the 4-parameter Tukey g-and-h (1977) distributions. The
quantile-based transformation (Hoaglin 1985
<doi:10.1002/9781118150702.ch11>) and its reverse
transformation.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between TukeyGH77 versions 0.1.4 dated 2025-03-15 and 0.2.0 dated 2026-07-16
TukeyGH77-0.1.4/TukeyGH77/R/GH2z.R |only TukeyGH77-0.1.4/TukeyGH77/R/helper.R |only TukeyGH77-0.1.4/TukeyGH77/R/letterValue.R |only TukeyGH77-0.1.4/TukeyGH77/R/vuniroot2.R |only TukeyGH77-0.1.4/TukeyGH77/R/z2GH.R |only TukeyGH77-0.1.4/TukeyGH77/man/GH2z.Rd |only TukeyGH77-0.1.4/TukeyGH77/man/TukeyGH_helper.Rd |only TukeyGH77-0.1.4/TukeyGH77/man/letterValue.Rd |only TukeyGH77-0.1.4/TukeyGH77/man/vuniroot2.Rd |only TukeyGH77-0.1.4/TukeyGH77/man/z2GH.Rd |only TukeyGH77-0.2.0/TukeyGH77/DESCRIPTION | 34 +++---- TukeyGH77-0.2.0/TukeyGH77/MD5 | 32 +++--- TukeyGH77-0.2.0/TukeyGH77/NAMESPACE | 13 -- TukeyGH77-0.2.0/TukeyGH77/R/0PACKAGE.R | 15 --- TukeyGH77-0.2.0/TukeyGH77/R/TukeyGH.R | 100 +++++++++++---------- TukeyGH77-0.2.0/TukeyGH77/R/trans.R |only TukeyGH77-0.2.0/TukeyGH77/build/partial.rdb |binary TukeyGH77-0.2.0/TukeyGH77/inst |only TukeyGH77-0.2.0/TukeyGH77/man/TukeyGH.Rd | 47 +++------ TukeyGH77-0.2.0/TukeyGH77/man/TukeyGH77-package.Rd | 19 +-- TukeyGH77-0.2.0/TukeyGH77/man/d_z2GH.Rd |only TukeyGH77-0.2.0/TukeyGH77/man/tukey_transform.Rd |only 22 files changed, 112 insertions(+), 148 deletions(-)
Title: Quantile Least Mahalanobis Distance Estimator for Tukey g-&-h
Mixture
Description: Functions for simulation, estimation, and model
selection of finite mixtures of Tukey g-and-h
distributions. The author has retired from academic research.
Accordingly, this package should not be considered a validated tool
for use in peer-reviewed publications or as the basis for grant applications.
Backward compatibility with user-code published in
<doi:10.1007/s11222-025-10596-9> is not maintained in versions >= 0.3.0 (July 2026) of this package. The authors of those publications are the appropriate contacts for reproducibility inquiries.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between QuantileGH versions 0.1.8 dated 2025-03-15 and 0.3.0 dated 2026-07-16
QuantileGH-0.1.8/QuantileGH/R/QLMDe.R |only QuantileGH-0.1.8/QuantileGH/R/QLMDe_stepK.R |only QuantileGH-0.1.8/QuantileGH/R/QLMDp.R |only QuantileGH-0.1.8/QuantileGH/R/drop1.fmx.R |only QuantileGH-0.1.8/QuantileGH/R/fmx_init.R |only QuantileGH-0.1.8/QuantileGH/R/mahalanobis_int.R |only QuantileGH-0.1.8/QuantileGH/R/quantile_ext.R |only QuantileGH-0.1.8/QuantileGH/R/reAssign.R |only QuantileGH-0.1.8/QuantileGH/R/step_fmx.R |only QuantileGH-0.1.8/QuantileGH/man/QLMDe.Rd |only QuantileGH-0.1.8/QuantileGH/man/QLMDe_stepK.Rd |only QuantileGH-0.1.8/QuantileGH/man/QLMDp.Rd |only QuantileGH-0.1.8/QuantileGH/man/drop1_fmx.Rd |only QuantileGH-0.1.8/QuantileGH/man/fmx_cluster.Rd |only QuantileGH-0.1.8/QuantileGH/man/fmx_hybrid.Rd |only QuantileGH-0.1.8/QuantileGH/man/fmx_normix.Rd |only QuantileGH-0.1.8/QuantileGH/man/klist.Rd |only QuantileGH-0.1.8/QuantileGH/man/mahalanobis_int.Rd |only QuantileGH-0.1.8/QuantileGH/man/quantile_vcov.Rd |only QuantileGH-0.1.8/QuantileGH/man/reAssign.Rd |only QuantileGH-0.1.8/QuantileGH/man/step_fmx.Rd |only QuantileGH-0.3.0/QuantileGH/DESCRIPTION | 40 +++++------ QuantileGH-0.3.0/QuantileGH/MD5 | 37 ++-------- QuantileGH-0.3.0/QuantileGH/NAMESPACE | 64 +----------------- QuantileGH-0.3.0/QuantileGH/NEWS.md | 2 QuantileGH-0.3.0/QuantileGH/R/0PACKAGE.R | 48 ++++++++++--- QuantileGH-0.3.0/QuantileGH/R/allequal.R | 4 - QuantileGH-0.3.0/QuantileGH/R/mahalanobis_.R |only QuantileGH-0.3.0/QuantileGH/build/partial.rdb |binary QuantileGH-0.3.0/QuantileGH/man/QuantileGH-package.Rd | 22 ++++-- QuantileGH-0.3.0/QuantileGH/man/mahalanobis_.Rd |only 31 files changed, 91 insertions(+), 126 deletions(-)
Title: Pedigree Validation Genetic Composition of Diploids & Polyploids
Description: Tools for pedigree quality control and genomic breed/line
composition estimation in diploid and polyploid breeding populations.
'BIGpopA' provides functions to check and correct common pedigree
errors, assign parentage from SNP genotype data using Mendelian error
rates, validate parent-offspring trios, and estimate genome-wide
breed or line composition using quadratic programming. Supports both
diploid and polyploid species. For more details about the included 'breedTools'
functions, see Funkhouser et al. (2017) <doi:10.2527/tas2016.0003>.
Author: Josue Chinchilla-Vargas [cre, aut],
Alexander Sandercock [aut],
University of Florida [cph]
Maintainer: Josue Chinchilla-Vargas <josue.chinchilla@ufl.edu>
Diff between BIGpopA versions 1.0.5 dated 2026-06-24 and 1.0.6 dated 2026-07-16
DESCRIPTION | 13 ++++++++----- MD5 | 17 +++++++++++------ NEWS.md | 3 +++ README.md | 9 +++++++-- build |only inst/CITATION | 2 +- inst/doc |only tests/testthat/test-breedtools_poly.R | 2 +- tests/testthat/test-check_ped.R | 2 +- vignettes |only 10 files changed, 32 insertions(+), 16 deletions(-)
Title: A Toolkit for Research Workflows
Description: Provides utility functions to help researchers implement best
practices for their coding projects. Includes tools for reading and
cleaning data files, initializing R projects with a standard folder
structure and optional YAML configuration, creating 'Quarto' documents
from reproducible templates with optional sample data and custom styling,
detecting the execution context across interactive, 'Quarto', and
script-based workflows, splitting data frames into group-level output
files, applying analysis functions to each group with optional parallel
execution, and rendering syntactic tree diagrams as standalone PNG images
via 'Typst'.
Author: Erwin Lares [aut, cre]
Maintainer: Erwin Lares <erwin.lares@wisc.edu>
Diff between toolero versions 0.3.0 dated 2026-04-27 and 0.4.0 dated 2026-07-16
DESCRIPTION | 27 - MD5 | 88 +++- NAMESPACE | 10 NEWS.md | 130 ++++++ R/arborize.R |only R/check-project.R |only R/create-qmd.R | 319 +++++++++++++-- R/init-project.R | 262 +++++++++++-- R/qmd-to-r.R |only R/read-clean-csv.R | 137 ++++++ R/run-by-group.R |only R/toolero-package.R |only R/write-by-group.R | 176 +++++++- R/write-clean-csv.R |only README.md | 543 ++++++++++++++++++++++----- build/partial.rdb |only build/vignette.rds |binary inst/WORDLIST | 52 ++ inst/doc/arborize.R |only inst/doc/arborize.Rmd |only inst/doc/arborize.html |only inst/doc/detect-execution-context.R |only inst/doc/detect-execution-context.Rmd |only inst/doc/detect-execution-context.html |only inst/doc/toolero-intro.R | 67 +++ inst/doc/toolero-intro.Rmd | 280 ++++++++++++-- inst/doc/toolero-intro.html | 659 +++++++++++++++++++++------------ inst/extdata/data-provenance.md |only inst/templates/example.qmd | 56 ++ inst/templates/logo.png |only inst/templates/skeleton.qmd |only man/arborize.Rd |only man/check_project.Rd |only man/create_qmd.Rd | 85 +++- man/dot-build_arborize_qmd.Rd |only man/dot-write_arborize_provenance.Rd |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/generate_project_config.Rd |only man/init_project.Rd | 31 + man/qmd_to_r.Rd |only man/read_clean_csv.Rd | 64 ++- man/run_by_group.Rd |only man/toolero-package.Rd |only man/write_by_group.Rd | 69 ++- man/write_clean_csv.Rd |only tests/testthat/test-arborize.R |only tests/testthat/test-check-project.R |only tests/testthat/test-create_qmd.R | 389 ++++++++++++++++++- tests/testthat/test-init-project.R | 352 +++++++++++++++-- tests/testthat/test-qmd-to-r.R |only tests/testthat/test-read_clean_csv.R | 94 ++++ tests/testthat/test-run-by-group.R |only tests/testthat/test-write-clean-csv.R |only tests/testthat/test-write_by_group.R | 197 +++++++++ vignettes/arborize.Rmd |only vignettes/detect-execution-context.Rmd |only vignettes/figures |only vignettes/toolero-intro.Rmd | 280 ++++++++++++-- 61 files changed, 3687 insertions(+), 680 deletions(-)
Title: Provides a 'PySpark' Back-End for the 'sparklyr' Package
Description: It enables 'sparklyr' to integrate with 'Spark Connect', and
'Databricks Connect' by providing a wrapper over the 'PySpark'
'python' library.
Author: Edgar Ruiz [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Edgar Ruiz <edgar@posit.co>
Diff between pysparklyr versions 0.2.1 dated 2026-04-20 and 0.2.2 dated 2026-07-16
DESCRIPTION | 17 +- MD5 | 32 +-- NAMESPACE | 2 NEWS.md | 20 ++ R/connect-snowflake.R | 112 ++++++------- R/deploy.R | 6 R/dplyr.R | 48 ++++- R/python-to-pandas-cleaned.R | 9 - R/python-use-envname.R | 18 +- R/start-stop-service.R | 4 tests/testthat/_snaps/data-write.md | 24 +- tests/testthat/_snaps/dplyr.md | 16 - tests/testthat/helper-ml.R | 5 tests/testthat/setup.R | 33 ++- tests/testthat/test-dplyr.R | 16 + tests/testthat/test-sparklyr-spark-connect.R | 16 + tests/testthat/test-zzz-spark-connect.R | 228 +++++++++++++++++++++++++-- 17 files changed, 449 insertions(+), 157 deletions(-)
Title: Providing Fast and Flexible Functions for Distance Correlation
Analysis
Description: Provides methods for distance covariance and distance correlation (Szekely, et al. (2007) <doi:10.1214/009053607000000505>), generalized version thereof (Sejdinovic, et al. (2013) <doi:10.1214/13-AOS1140>) and corresponding tests (Berschneider, Bottcher (2018) <doi:10.48550/arXiv.1808.07280>. Distance standard deviation methods (Edelmann, et al. (2020) <doi:10.1214/19-AOS1935>) and distance correlation methods for survival endpoints (Edelmann, et al. (2021) <doi:10.1111/biom.13470>) are also included.
Author: Dominic Edelmann [aut, cre],
Jochen Fiedler [aut]
Maintainer: Dominic Edelmann <dominic.edelmann@dkfz-heidelberg.de>
Diff between dcortools versions 0.2.0 dated 2026-07-02 and 0.2.1 dated 2026-07-16
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 9 +++++++++ R/distcov_test2.R | 4 ++-- build/partial.rdb |binary 5 files changed, 18 insertions(+), 9 deletions(-)
Title: Bayesian Understanding for Mediator Selection Framework
Description: A collection of quantitative tools for selecting mediating effects within exploratory Bayesian mediation models. The package accommodates both continuous and dichotomous outcomes, including the dependent variables and the mediators for identifying and analyzing mediation pathways.
Author: Dingjing Shi [aut, cre],
Tansu Celikel [aut],
Chih-Chia Hsing [aut],
Dexin Shi [aut]
Maintainer: Dingjing Shi <dshi32@gatech.edu>
Diff between buzzMed versions 0.1.2 dated 2026-05-28 and 0.1.3 dated 2026-07-16
DESCRIPTION | 17 +-- MD5 | 74 +++++++------ NAMESPACE | 2 NEWS.md | 16 ++ R/build_ebmed_model_mcat_ycat.R | 6 - R/build_ebmed_model_mcat_ycont.R | 6 - R/build_ebmed_model_mcont_ycat.R | 6 - R/build_ebmed_model_mcont_ycont.R | 6 - R/buzzEBMcatMcatY.R | 80 ++++++-------- R/buzzEBMcatMcontY.R | 92 +++++++--------- R/buzzEBMcontMcatY.R | 90 +++++++--------- R/buzzEBMcontMcontY.R | 103 +++++++++--------- R/data.R |only R/define_init_values.R | 2 R/helpers.R | 26 +--- R/longBMed.R |only R/make_parms_main.R | 14 -- R/makes_parms_from_df.R | 4 R/run_parms_wizard.R | 5 README.md | 105 ++++++++++++++----- data |only inst/WORDLIST | 6 + man/buzzEBMcatMcatY.Rd | 88 +++++++-------- man/buzzEBMcatMcontY.Rd | 103 +++++++++--------- man/buzzEBMcontMcatY.Rd | 101 +++++++++--------- man/buzzEBMcontMcontY.Rd | 116 +++++++++++---------- man/framing2.Rd |only man/longBMed.Rd |only man/make_parms_main.Rd | 6 - man/run_parms_wizard.Rd | 5 man/singlespikes.Rd |only man/sublongspikes.Rd |only tests/testthat/test-build_ebmed_model_mcat_ycat.R | 11 - tests/testthat/test-build_ebmed_model_mcat_ycont.R | 13 -- tests/testthat/test-buzzEBMcatMcatY.R | 4 tests/testthat/test-buzzEBMcatMcontY.R | 2 tests/testthat/test-buzzEBMcontMcatY.R | 2 tests/testthat/test-buzzEBMcontMcontY.R | 2 tests/testthat/test-longBMed.R |only tests/testthat/test-make_parms_main.R | 14 +- tests/testthat/test-parse_buzz_syntax.R | 6 - 41 files changed, 591 insertions(+), 542 deletions(-)
Title: Structural Equation Modeling and Confirmatory Network Analysis
Description: Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.
Author: Sacha Epskamp [aut, cre]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between psychonetrics versions 0.15 dated 2026-02-27 and 0.16.9 dated 2026-07-16
psychonetrics-0.15/psychonetrics/R/00_steps_to_implement_distribution.R |only psychonetrics-0.15/psychonetrics/R/00_steps_to_implement_estimator.R |only psychonetrics-0.15/psychonetrics/R/00_steps_to_implement_model.R |only psychonetrics-0.15/psychonetrics/R/02_algebrahelpers_trysolve.R |only psychonetrics-0.15/psychonetrics/R/f_conveneince_fakeoptimr.R |only psychonetrics-0.16.9/psychonetrics/DESCRIPTION | 18 psychonetrics-0.16.9/psychonetrics/MD5 | 530 ++- psychonetrics-0.16.9/psychonetrics/NAMESPACE | 34 psychonetrics-0.16.9/psychonetrics/NEWS | 1047 +++++++ psychonetrics-0.16.9/psychonetrics/R/00_codeOrganization.R | 98 psychonetrics-0.16.9/psychonetrics/R/01_classes.R | 17 psychonetrics-0.16.9/psychonetrics/R/02_algebrahelpers_expectedmodel.R | 47 psychonetrics-0.16.9/psychonetrics/R/02_algebrahelpers_spectralshift.R | 8 psychonetrics-0.16.9/psychonetrics/R/02_algebrahelpers_vectorizeMatrices.R | 96 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_PDC.R |only psychonetrics-0.16.9/psychonetrics/R/03_modelformation_adjust_p_values.R | 25 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_defaultoptimizer.R | 7 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_fixAdj.R | 2 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_fixMatrix.R | 2 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_fixTau.R | 2 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_fixedx.R |only psychonetrics-0.16.9/psychonetrics/R/03_modelformation_generateParameterTable.R | 8 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_impliedcovstructures.R | 8 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_labtoind.R | 29 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_matrixSetup_Isingbeta.R | 11 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_matrixSetup_delta.R | 5 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_matrixSetup_spindelta.R |only psychonetrics-0.16.9/psychonetrics/R/03_modelformation_missingpatterns.R | 19 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_samplestats_norawts.R | 223 + psychonetrics-0.16.9/psychonetrics/R/03_modelformation_startvaluesandbounds.R | 54 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_tsData.R | 34 psychonetrics-0.16.9/psychonetrics/R/03_modelformation_twolevel_stats.R |only psychonetrics-0.16.9/psychonetrics/R/04_generalFit_fitfunction.R | 7 psychonetrics-0.16.9/psychonetrics/R/04_generalFit_gradient.R | 34 psychonetrics-0.16.9/psychonetrics/R/04_generalFit_logLikelihood.R | 4 psychonetrics-0.16.9/psychonetrics/R/04_generalfit_FisherInformation.R | 25 psychonetrics-0.16.9/psychonetrics/R/04_generalfit_VCOV.R | 171 + psychonetrics-0.16.9/psychonetrics/R/04_generalfit_impliedModel.R | 11 psychonetrics-0.16.9/psychonetrics/R/04_generalfit_loglikelihood_Ising.R | 26 psychonetrics-0.16.9/psychonetrics/R/04_generalfit_loglikelihood_gauss.R | 4 psychonetrics-0.16.9/psychonetrics/R/04_generalfit_loglikelihood_gauss2L.R |only psychonetrics-0.16.9/psychonetrics/R/04_generalfit_prepareModel.R | 12 psychonetrics-0.16.9/psychonetrics/R/04_generalfit_proximal_gradient.R | 9 psychonetrics-0.16.9/psychonetrics/R/04_modelformation_matrixSetup_flexcov.R | 31 psychonetrics-0.16.9/psychonetrics/R/05_MLestimator_expected_hessian_Gauss2L.R |only psychonetrics-0.16.9/psychonetrics/R/05_MLestimator_expected_hessian_Ising.R | 35 psychonetrics-0.16.9/psychonetrics/R/05_MLestimator_fit_Gauss.R | 11 psychonetrics-0.16.9/psychonetrics/R/05_MLestimator_fit_Gauss2L.R |only psychonetrics-0.16.9/psychonetrics/R/05_MLestimator_fit_Ising.R | 26 psychonetrics-0.16.9/psychonetrics/R/05_MLestimator_gradient_Gauss2L.R |only psychonetrics-0.16.9/psychonetrics/R/05_MLestimator_gradient_Ising.R | 29 psychonetrics-0.16.9/psychonetrics/R/07_FIMLestimator_expected_hessian_Gauss.R | 4 psychonetrics-0.16.9/psychonetrics/R/07_FIMLestimator_fit_Gauss.R | 4 psychonetrics-0.16.9/psychonetrics/R/07_FIMLestimator_gradient_Gauss.R | 4 psychonetrics-0.16.9/psychonetrics/R/08_outputHelpers_goodNum.R | 2 psychonetrics-0.16.9/psychonetrics/R/09_modelmodifivation_emergencystart.R | 17 psychonetrics-0.16.9/psychonetrics/R/15_lvm_derivatives.R | 29 psychonetrics-0.16.9/psychonetrics/R/15_lvm_identify.R | 29 psychonetrics-0.16.9/psychonetrics/R/15_lvm_implied.R | 17 psychonetrics-0.16.9/psychonetrics/R/16_var1_derivatives.R | 26 psychonetrics-0.16.9/psychonetrics/R/16_var1_implied.R | 7 psychonetrics-0.16.9/psychonetrics/R/18_dlvm1_derivatives.R | 128 psychonetrics-0.16.9/psychonetrics/R/18_dlvm1_identify.R | 22 psychonetrics-0.16.9/psychonetrics/R/18_dlvm1_implied.R | 53 psychonetrics-0.16.9/psychonetrics/R/19_tsdlvm1_derivatives.R | 22 psychonetrics-0.16.9/psychonetrics/R/19_tsdlvm1_identify.R | 24 psychonetrics-0.16.9/psychonetrics/R/19_tsdlvm1_implied.R | 6 psychonetrics-0.16.9/psychonetrics/R/20_meta_varcov_derivatives.R | 5 psychonetrics-0.16.9/psychonetrics/R/20_meta_varcov_prepare.R | 3 psychonetrics-0.16.9/psychonetrics/R/21_Ising_derivatives.R | 12 psychonetrics-0.16.9/psychonetrics/R/21_Ising_helperfunctions.R | 38 psychonetrics-0.16.9/psychonetrics/R/21_Ising_identify.R | 11 psychonetrics-0.16.9/psychonetrics/R/21_Ising_implied.R | 2 psychonetrics-0.16.9/psychonetrics/R/21_Ising_prepare.R | 4 psychonetrics-0.16.9/psychonetrics/R/22_ml_lvm_derivatives.R | 244 + psychonetrics-0.16.9/psychonetrics/R/22_ml_lvm_identify.R | 45 psychonetrics-0.16.9/psychonetrics/R/22_ml_lvm_implied.R | 102 psychonetrics-0.16.9/psychonetrics/R/22_ml_lvm_prepare.R | 29 psychonetrics-0.16.9/psychonetrics/R/23_meta_lvm_derivatives.R | 7 psychonetrics-0.16.9/psychonetrics/R/23_meta_lvm_prepare.R | 4 psychonetrics-0.16.9/psychonetrics/R/24_meta_var1_derivatives.R | 7 psychonetrics-0.16.9/psychonetrics/R/25_panelvar_derivatives.R |only psychonetrics-0.16.9/psychonetrics/R/25_panelvar_implied.R |only psychonetrics-0.16.9/psychonetrics/R/25_panelvar_prepare.R |only psychonetrics-0.16.9/psychonetrics/R/26_ml_var1_derivatives.R |only psychonetrics-0.16.9/psychonetrics/R/26_ml_var1_implied.R |only psychonetrics-0.16.9/psychonetrics/R/26_ml_var1_prepare.R |only psychonetrics-0.16.9/psychonetrics/R/27_ml_varcov_derivatives.R |only psychonetrics-0.16.9/psychonetrics/R/27_ml_varcov_implied.R |only psychonetrics-0.16.9/psychonetrics/R/27_ml_varcov_prepare.R |only psychonetrics-0.16.9/psychonetrics/R/RcppExports.R | 100 psychonetrics-0.16.9/psychonetrics/R/a_models_BlumeCapel.R |only psychonetrics-0.16.9/psychonetrics/R/a_models_Ising.R | 248 + psychonetrics-0.16.9/psychonetrics/R/a_models_bifactor.R | 12 psychonetrics-0.16.9/psychonetrics/R/a_models_dlvm1.R | 327 +- psychonetrics-0.16.9/psychonetrics/R/a_models_fromlavaan.R |only psychonetrics-0.16.9/psychonetrics/R/a_models_joingroups.R | 47 psychonetrics-0.16.9/psychonetrics/R/a_models_latentgrowth.R | 26 psychonetrics-0.16.9/psychonetrics/R/a_models_lvm.R | 349 ++ psychonetrics-0.16.9/psychonetrics/R/a_models_meta_lvm.R | 78 psychonetrics-0.16.9/psychonetrics/R/a_models_meta_var1.R | 72 psychonetrics-0.16.9/psychonetrics/R/a_models_meta_varcov.R | 259 + psychonetrics-0.16.9/psychonetrics/R/a_models_ml_lvm.R | 221 + psychonetrics-0.16.9/psychonetrics/R/a_models_ml_tslvgvar.R | 33 psychonetrics-0.16.9/psychonetrics/R/a_models_ml_var1.R |only psychonetrics-0.16.9/psychonetrics/R/a_models_ml_varcov.R |only psychonetrics-0.16.9/psychonetrics/R/a_models_name_aliases.R |only psychonetrics-0.16.9/psychonetrics/R/a_models_panelgvar.R | 101 psychonetrics-0.16.9/psychonetrics/R/a_models_panelvar.R |only psychonetrics-0.16.9/psychonetrics/R/a_models_ri_clpm.R | 178 + psychonetrics-0.16.9/psychonetrics/R/a_models_tsdlvm1.R | 55 psychonetrics-0.16.9/psychonetrics/R/a_models_var1.R | 84 psychonetrics-0.16.9/psychonetrics/R/a_models_varcov.R | 286 + psychonetrics-0.16.9/psychonetrics/R/b_modelexpansions_addMIs.R | 135 psychonetrics-0.16.9/psychonetrics/R/b_modelexpansions_addSEs.R | 25 psychonetrics-0.16.9/psychonetrics/R/b_modelexpansions_addfit.R | 1482 +++++++++- psychonetrics-0.16.9/psychonetrics/R/b_modelexpansions_identify.R | 4 psychonetrics-0.16.9/psychonetrics/R/b_modelexpansions_standardize.R |only psychonetrics-0.16.9/psychonetrics/R/c_runmodel.R | 157 - psychonetrics-0.16.9/psychonetrics/R/d_stepup.R | 161 - psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_allequal.R |only psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_find_penalized_lambda.R | 2 psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_freepar.R | 38 psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_groupequal.R | 12 psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_groupfree.R | 8 psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_intersectionmodel.R | 60 psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_partialprune.R | 180 + psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_prune.R | 65 psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_ri_clpm_stationarity.R | 247 + psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_setequal.R | 20 psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_transmod.R | 48 psychonetrics-0.16.9/psychonetrics/R/e_modelmodifications_unionmodel.R | 60 psychonetrics-0.16.9/psychonetrics/R/f_conveneince_changedata.R | 78 psychonetrics-0.16.9/psychonetrics/R/f_conveneince_setEstimator.R | 181 + psychonetrics-0.16.9/psychonetrics/R/f_conveneince_update_baseline_saturated.R |only psychonetrics-0.16.9/psychonetrics/R/f_conveneince_usecpp.R | 15 psychonetrics-0.16.9/psychonetrics/R/f_convenience_CIplot.R | 38 psychonetrics-0.16.9/psychonetrics/R/f_convenience_MIs.R | 23 psychonetrics-0.16.9/psychonetrics/R/f_convenience_aggregate_bootstraps.R | 24 psychonetrics-0.16.9/psychonetrics/R/f_convenience_bootstrap.R | 73 psychonetrics-0.16.9/psychonetrics/R/f_convenience_defaultpenalize.R | 34 psychonetrics-0.16.9/psychonetrics/R/f_convenience_equalityScoreTest.R |only psychonetrics-0.16.9/psychonetrics/R/f_convenience_ergodicity.R | 4 psychonetrics-0.16.9/psychonetrics/R/f_convenience_factorscores.R | 28 psychonetrics-0.16.9/psychonetrics/R/f_convenience_getmatrix.R | 2 psychonetrics-0.16.9/psychonetrics/R/f_convenience_logbook.R | 6 psychonetrics-0.16.9/psychonetrics/R/f_convenience_modelCompare.R | 137 psychonetrics-0.16.9/psychonetrics/R/f_convenience_parameters.R | 50 psychonetrics-0.16.9/psychonetrics/R/f_convenience_penalize.R | 151 - psychonetrics-0.16.9/psychonetrics/R/f_convenience_printMethod.R | 42 psychonetrics-0.16.9/psychonetrics/R/f_convenience_printMethod_bootstrap.R | 5 psychonetrics-0.16.9/psychonetrics/R/f_convenience_scaledDiffTest.R |only psychonetrics-0.16.9/psychonetrics/R/f_convenience_tolavaan.R |only psychonetrics-0.16.9/psychonetrics/R/f_convenience_write_psychonetrics.R | 3 psychonetrics-0.16.9/psychonetrics/R/g_simulations_loop_psychonetrics.R | 37 psychonetrics-0.16.9/psychonetrics/R/g_simulations_replicator.R | 31 psychonetrics-0.16.9/psychonetrics/R/h_modelsearch.R | 87 psychonetrics-0.16.9/psychonetrics/build/partial.rdb |binary psychonetrics-0.16.9/psychonetrics/inst/COPYRIGHTS |only psychonetrics-0.16.9/psychonetrics/inst/tinytest |only psychonetrics-0.16.9/psychonetrics/man/BlumeCapel.Rd |only psychonetrics-0.16.9/psychonetrics/man/Ising.Rd | 33 psychonetrics-0.16.9/psychonetrics/man/Jonas.Rd | 8 psychonetrics-0.16.9/psychonetrics/man/MIs.Rd | 2 psychonetrics-0.16.9/psychonetrics/man/StarWars.Rd | 6 psychonetrics-0.16.9/psychonetrics/man/algebraMatrices.Rd | 2 psychonetrics-0.16.9/psychonetrics/man/allequal.Rd |only psychonetrics-0.16.9/psychonetrics/man/changedata.Rd | 2 psychonetrics-0.16.9/psychonetrics/man/compare.Rd | 101 psychonetrics-0.16.9/psychonetrics/man/convenience.Rd | 86 psychonetrics-0.16.9/psychonetrics/man/covML.Rd | 6 psychonetrics-0.16.9/psychonetrics/man/diagnostics.Rd | 5 psychonetrics-0.16.9/psychonetrics/man/dlvm1_family.Rd | 108 psychonetrics-0.16.9/psychonetrics/man/equalityScoreTest.Rd |only psychonetrics-0.16.9/psychonetrics/man/esa.Rd | 6 psychonetrics-0.16.9/psychonetrics/man/factorscores.Rd | 6 psychonetrics-0.16.9/psychonetrics/man/find_penalized_lambda.Rd | 3 psychonetrics-0.16.9/psychonetrics/man/fit.Rd | 9 psychonetrics-0.16.9/psychonetrics/man/fixstart.Rd | 4 psychonetrics-0.16.9/psychonetrics/man/fromlavaan.Rd |only psychonetrics-0.16.9/psychonetrics/man/getVCOV.Rd | 2 psychonetrics-0.16.9/psychonetrics/man/getmatrix.Rd | 4 psychonetrics-0.16.9/psychonetrics/man/groupequal_groupfree.Rd | 4 psychonetrics-0.16.9/psychonetrics/man/latentgrowth.Rd | 6 psychonetrics-0.16.9/psychonetrics/man/logbook.Rd | 4 psychonetrics-0.16.9/psychonetrics/man/loop_psychonetrics.Rd | 8 psychonetrics-0.16.9/psychonetrics/man/lvm_family.Rd | 90 psychonetrics-0.16.9/psychonetrics/man/meta_lvm.Rd | 22 psychonetrics-0.16.9/psychonetrics/man/meta_var1.Rd | 65 psychonetrics-0.16.9/psychonetrics/man/meta_varcov.Rd | 66 psychonetrics-0.16.9/psychonetrics/man/ml_lvm.Rd | 144 psychonetrics-0.16.9/psychonetrics/man/ml_tsdlvm1.Rd | 18 psychonetrics-0.16.9/psychonetrics/man/ml_var1.Rd |only psychonetrics-0.16.9/psychonetrics/man/ml_varcov.Rd |only psychonetrics-0.16.9/psychonetrics/man/modelsearch.Rd | 2 psychonetrics-0.16.9/psychonetrics/man/modelupdate.Rd | 2 psychonetrics-0.16.9/psychonetrics/man/panelvar_family.Rd |only psychonetrics-0.16.9/psychonetrics/man/parameters.Rd | 34 psychonetrics-0.16.9/psychonetrics/man/parequal.Rd | 4 psychonetrics-0.16.9/psychonetrics/man/partialprune.Rd | 26 psychonetrics-0.16.9/psychonetrics/man/penalize.Rd | 10 psychonetrics-0.16.9/psychonetrics/man/prune.Rd | 2 psychonetrics-0.16.9/psychonetrics/man/psychonetrics-class.Rd | 55 psychonetrics-0.16.9/psychonetrics/man/psychonetrics-package.Rd | 2 psychonetrics-0.16.9/psychonetrics/man/psychonetrics_log-class.Rd | 8 psychonetrics-0.16.9/psychonetrics/man/ri_clpm.Rd | 152 - psychonetrics-0.16.9/psychonetrics/man/runmodel.Rd | 23 psychonetrics-0.16.9/psychonetrics/man/simplestructure.Rd | 4 psychonetrics-0.16.9/psychonetrics/man/stepup.Rd | 6 psychonetrics-0.16.9/psychonetrics/man/tolavaan.Rd |only psychonetrics-0.16.9/psychonetrics/man/transmod.Rd | 5 psychonetrics-0.16.9/psychonetrics/man/tsdlvm1_family.Rd | 59 psychonetrics-0.16.9/psychonetrics/man/update_baseline_saturated.Rd |only psychonetrics-0.16.9/psychonetrics/man/var1_family.Rd | 37 psychonetrics-0.16.9/psychonetrics/man/varcov_family.Rd | 61 psychonetrics-0.16.9/psychonetrics/src/02_algebrahelpers_RcppHelpers.cpp | 29 psychonetrics-0.16.9/psychonetrics/src/03_modelformation_PDC_cpp.cpp |only psychonetrics-0.16.9/psychonetrics/src/03_modelformation_PDC_cpp.h |only psychonetrics-0.16.9/psychonetrics/src/03_modelinformation_sparseordense_cpp.cpp | 51 psychonetrics-0.16.9/psychonetrics/src/04_generalFit_FisherInformation_cpp.cpp | 36 psychonetrics-0.16.9/psychonetrics/src/04_generalFit_gradient_cpp.cpp | 65 psychonetrics-0.16.9/psychonetrics/src/04_generalfit_fitfunction_cpp.cpp | 24 psychonetrics-0.16.9/psychonetrics/src/04_generalfit_implied_and_prepare.cpp | 37 psychonetrics-0.16.9/psychonetrics/src/04_generalfit_loglik_fimlcpp.cpp | 50 psychonetrics-0.16.9/psychonetrics/src/04_generalfit_optimWorkspace.cpp | 42 psychonetrics-0.16.9/psychonetrics/src/04_generalfit_optimWorkspace.h | 1 psychonetrics-0.16.9/psychonetrics/src/04_generalfit_psychonetrics_BFGS.cpp | 8 psychonetrics-0.16.9/psychonetrics/src/04_generalfit_psychonetrics_LBFGSB.cpp | 37 psychonetrics-0.16.9/psychonetrics/src/05_MLestimator_expected_Hessian_Gauss2L_cpp.cpp |only psychonetrics-0.16.9/psychonetrics/src/05_MLestimator_expected_Hessian_Gauss2L_cpp.h |only psychonetrics-0.16.9/psychonetrics/src/05_MLestimator_fit_Gauss2L_cpp.cpp |only psychonetrics-0.16.9/psychonetrics/src/05_MLestimator_fit_Gauss2L_cpp.h |only psychonetrics-0.16.9/psychonetrics/src/05_MLestimator_fit_Gauss_cpp.cpp | 18 psychonetrics-0.16.9/psychonetrics/src/05_MLestimator_fit_Ising.cpp | 33 psychonetrics-0.16.9/psychonetrics/src/05_MLestimator_gradient_Gauss2L_cpp.cpp |only psychonetrics-0.16.9/psychonetrics/src/05_MLestimator_gradient_Gauss2L_cpp.h |only psychonetrics-0.16.9/psychonetrics/src/05_MLestimator_gradient_Ising_cpp.cpp | 44 psychonetrics-0.16.9/psychonetrics/src/06_DWLS_Wmat.cpp | 10 psychonetrics-0.16.9/psychonetrics/src/06_ULS_fitfunction_cpp.cpp | 37 psychonetrics-0.16.9/psychonetrics/src/06_ULS_gradient_cpp.cpp | 19 psychonetrics-0.16.9/psychonetrics/src/06_WLS_Wmat.cpp | 25 psychonetrics-0.16.9/psychonetrics/src/07_FIMLestimator_expected_hessian_gauss_cppversion.cpp | 61 psychonetrics-0.16.9/psychonetrics/src/07_FIMLestimator_fitfunction_cppversion.cpp | 49 psychonetrics-0.16.9/psychonetrics/src/07_FIMLestimator_jacobian_gauss.cpp | 53 psychonetrics-0.16.9/psychonetrics/src/10_ordinal_covPrepare.cpp | 10 psychonetrics-0.16.9/psychonetrics/src/10_ordinal_cppFuns.cpp | 14 psychonetrics-0.16.9/psychonetrics/src/14_varcov_derivatives_cpp.cpp | 6 psychonetrics-0.16.9/psychonetrics/src/15_lvm_derivatives_cpp.cpp | 24 psychonetrics-0.16.9/psychonetrics/src/15_lvm_implied_cpp.cpp | 18 psychonetrics-0.16.9/psychonetrics/src/16_var1_derivatives_cpp.cpp | 55 psychonetrics-0.16.9/psychonetrics/src/16_var1_implied_cpp.cpp | 11 psychonetrics-0.16.9/psychonetrics/src/18_dlvm1_derivatives_cpp.cpp | 155 - psychonetrics-0.16.9/psychonetrics/src/18_dlvm1_implied_cpp.cpp | 79 psychonetrics-0.16.9/psychonetrics/src/19_tsdlvm1_derivatives.cpp | 29 psychonetrics-0.16.9/psychonetrics/src/19_tsdlvm1_implied_cpp.cpp | 11 psychonetrics-0.16.9/psychonetrics/src/20_meta_varcov_prepare_cpp.cpp | 7 psychonetrics-0.16.9/psychonetrics/src/21_Ising_derivatives.cpp | 7 psychonetrics-0.16.9/psychonetrics/src/21_Ising_expectedHessian.cpp | 107 psychonetrics-0.16.9/psychonetrics/src/21_Ising_expectedHessian_full.cpp |only psychonetrics-0.16.9/psychonetrics/src/21_Ising_expectedHessian_full.h |only psychonetrics-0.16.9/psychonetrics/src/21_Ising_helperfunctions.cpp | 395 +- psychonetrics-0.16.9/psychonetrics/src/21_Ising_helperfunctions.h | 32 psychonetrics-0.16.9/psychonetrics/src/21_Ising_implied_cpp.cpp | 2 psychonetrics-0.16.9/psychonetrics/src/21_Ising_prepare_cpp.cpp | 2 psychonetrics-0.16.9/psychonetrics/src/22_ml_lvm_derivatives.cpp | 338 ++ psychonetrics-0.16.9/psychonetrics/src/22_ml_lvm_implied_cpp.cpp | 137 psychonetrics-0.16.9/psychonetrics/src/22_ml_lvm_implied_cpp.h | 3 psychonetrics-0.16.9/psychonetrics/src/22_ml_lvm_prepare_cpp.cpp | 25 psychonetrics-0.16.9/psychonetrics/src/23_meta_lvm_derivatives_cpp.cpp | 19 psychonetrics-0.16.9/psychonetrics/src/23_meta_lvm_prepare_cpp.cpp | 4 psychonetrics-0.16.9/psychonetrics/src/24_meta_var1_derivatives_cpp.cpp | 12 psychonetrics-0.16.9/psychonetrics/src/24_meta_var1_prepare_cpp.cpp | 1 psychonetrics-0.16.9/psychonetrics/src/25_panelvar_derivatives_cpp.cpp |only psychonetrics-0.16.9/psychonetrics/src/25_panelvar_derivatives_cpp.h |only psychonetrics-0.16.9/psychonetrics/src/25_panelvar_implied_cpp.cpp |only psychonetrics-0.16.9/psychonetrics/src/25_panelvar_implied_cpp.h |only psychonetrics-0.16.9/psychonetrics/src/25_panelvar_prepare_cpp.cpp |only psychonetrics-0.16.9/psychonetrics/src/25_panelvar_prepare_cpp.h |only psychonetrics-0.16.9/psychonetrics/src/27_ml_varcov_derivatives_cpp.cpp |only psychonetrics-0.16.9/psychonetrics/src/27_ml_varcov_derivatives_cpp.h |only psychonetrics-0.16.9/psychonetrics/src/27_ml_varcov_implied_cpp.cpp |only psychonetrics-0.16.9/psychonetrics/src/27_ml_varcov_implied_cpp.h |only psychonetrics-0.16.9/psychonetrics/src/27_ml_varcov_prepare_cpp.cpp |only psychonetrics-0.16.9/psychonetrics/src/27_ml_varcov_prepare_cpp.h |only psychonetrics-0.16.9/psychonetrics/src/Makevars | 6 psychonetrics-0.16.9/psychonetrics/src/Makevars.win | 4 psychonetrics-0.16.9/psychonetrics/src/RcppExports.cpp | 345 +- psychonetrics-0.16.9/psychonetrics/src/b_modelexpansion_updateModel_cpp.cpp | 2 psychonetrics-0.16.9/psychonetrics/src/b_modelexpansions_addSEs_cpp.cpp | 137 psychonetrics-0.16.9/psychonetrics/tests |only 290 files changed, 11458 insertions(+), 2475 deletions(-)
Title: Generalization Error Minimization in SubSampling for Gaussian
Processes
Description: Implements the GEMSS algorithm for sequential subdata selection
in large-scale Gaussian process modeling (Chang, Hua, and Wu, 2026)
<doi:10.1080/00401706.2026.2670596>. The method selects data points
by a criterion consisting of predictive and space-filling parts, enabling
efficient surrogate modeling for massive datasets.
Author: Sheng-Zhan Hua [aut, cre]
Maintainer: Sheng-Zhan Hua <szhua@g.ucla.edu>
Diff between GEMSS versions 0.1.1 dated 2026-05-27 and 0.1.2 dated 2026-07-16
DESCRIPTION | 13 ++-- MD5 | 16 ++--- R/GEMSS.R | 144 +++++++++++++++++++++++++++++++++++++++------------- R/RcppExports.R | 38 ++++++------- README.md | 19 ++++++ build/partial.rdb |binary man/gemss_remove.Rd | 13 +--- man/gemss_select.Rd | 125 ++++++++++++++++++++++++++++++++++++--------- src/GEMSS.cpp | 6 +- 9 files changed, 266 insertions(+), 108 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: NNS (Nonlinear Nonparametric Statistics) leverages partial moments – the fundamental elements of variance that asymptotically approximate the area under f(x) – to provide a robust foundation for nonlinear analysis while maintaining linear equivalences. Designed for real-world data that violates symmetry, linearity, or distributional assumptions, NNS delivers a comprehensive suite of advanced statistical techniques, including: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic superiority / dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995, Second edition: <https://ovvo-financial.github.io/NNS/book/>).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb],
Rasheed Khoshnaw [ctb]
Maintainer: Fred Viole <ovvo.open.source@gmail.com>
Diff between NNS versions 13.0 dated 2026-06-30 and 13.1 dated 2026-07-16
DESCRIPTION | 8 MD5 | 103 NAMESPACE | 1 R/ARMA.R | 1 R/ARMA_optim.R | 25 R/Boost.R | 1259 ++++++-- R/Copula.R | 7 R/Multivariate_Regression.R | 851 +++-- R/NNS_VAR.R | 126 R/Normalization.R | 19 R/Partition_Map.R | 303 +- R/RcppExports.R | 28 R/Regression.R | 1777 +++++------- R/Stack.R | 2340 +++++++++++----- R/dy_d_wrt.R | 420 +- R/dy_dx.R | 2 R/gvload.R | 2 README.md | 6 inst/doc/NNSvignette_01_Overview.R | 4 inst/doc/NNSvignette_01_Overview.Rmd | 4 inst/doc/NNSvignette_01_Overview.html | 134 inst/doc/NNSvignette_03_Correlation_and_Dependence.html | 44 inst/doc/NNSvignette_07_Clustering_and_Regression.R | 41 inst/doc/NNSvignette_07_Clustering_and_Regression.Rmd | 41 inst/doc/NNSvignette_07_Clustering_and_Regression.html | 309 +- inst/doc/NNSvignette_08_Classification.R | 23 inst/doc/NNSvignette_08_Classification.Rmd | 23 inst/doc/NNSvignette_08_Classification.html | 51 inst/doc/NNSvignette_09_Forecasting.html | 4 man/NNS.ARMA.optim.Rd | 10 man/NNS.VAR.Rd | 10 man/NNS.boost.Rd | 8 man/NNS.part.Rd | 57 man/NNS.reg.Rd | 374 +- man/NNS.stack.Rd | 9 man/dy.d_.Rd | 158 - src/NNS_dep.cpp | 16 src/NNS_distance.cpp | 19 src/NNS_mreg_predict.cpp |only src/NNS_mreg_setup.cpp |only src/NNS_stack_fast.cpp |only src/RcppExports.cpp | 122 tests/testthat/Rplots.pdf |binary tests/testthat/helper-stack-parity.R |only tests/testthat/test-boost-duplicate-predictors.R |only tests/testthat/test-mreg-path-native.R |only tests/testthat/test-mreg-setup-native.R |only tests/testthat/test-native-nns-distance-default.R |only tests/testthat/test-racine-hastie-r2.R |only tests/testthat/test-regression-audit-repairs.R |only tests/testthat/test-stack-duplicate-predictors.R |only tests/testthat/test-stack-method1-native-parity.R |only tests/testthat/test-stack-method2-native-parity.R |only tests/testthat/test-stack-native-parity.R |only tests/testthat/test-univariate-fast-parity.R |only tests/testthat/test-xstar-path-native.R |only tests/testthat/test_Copula.R | 8 tests/testthat/test_Normalization.R |only vignettes/NNSvignette_01_Overview.Rmd | 4 vignettes/NNSvignette_07_Clustering_and_Regression.Rmd | 41 vignettes/NNSvignette_08_Classification.Rmd | 23 61 files changed, 5596 insertions(+), 3219 deletions(-)
Title: A Flexible Class for Messy Dates
Description: Contains a set of tools for constructing and coercing
into and from the "mdate" class.
This date class implements ISO 8601-2:2019(E) and
allows regular dates and times to be annotated
to express unspecified date or time components,
approximate or uncertain components,
ranges, and sets of dates.
The package therefore retains, represents, and reasons about data and time imprecision,
resolving to a single data/time only on demand.
This is useful for describing and analysing temporal information,
whether historical or recent, where date or time precision may vary.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Nathan Werth [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between messydates versions 0.5.4 dated 2025-06-02 and 1.0.0 dated 2026-07-16
messydates-0.5.4/messydates/R/class_duration.R |only messydates-0.5.4/messydates/R/coerce_extrema.R |only messydates-0.5.4/messydates/R/coerce_tendency.R |only messydates-0.5.4/messydates/R/operate_inequalities.R |only messydates-0.5.4/messydates/man/class_create.Rd |only messydates-0.5.4/messydates/man/class_duration.Rd |only messydates-0.5.4/messydates/man/class_make.Rd |only messydates-0.5.4/messydates/man/coerce_extrema.Rd |only messydates-0.5.4/messydates/man/coerce_tendency.Rd |only messydates-1.0.0/messydates/DESCRIPTION | 27 messydates-1.0.0/messydates/MD5 | 123 - messydates-1.0.0/messydates/NAMESPACE | 40 messydates-1.0.0/messydates/NEWS.md | 139 ++ messydates-1.0.0/messydates/R/class_mdate.R | 183 +- messydates-1.0.0/messydates/R/class_mduration.R |only messydates-1.0.0/messydates/R/class_methods.R | 43 messydates-1.0.0/messydates/R/coerce_from_messydate.R | 109 + messydates-1.0.0/messydates/R/coerce_to_messydate.R | 562 ++++++++ messydates-1.0.0/messydates/R/component_annotate.R | 141 +- messydates-1.0.0/messydates/R/component_extract.R | 162 ++ messydates-1.0.0/messydates/R/convert_contract.R | 18 messydates-1.0.0/messydates/R/convert_expand.R | 105 + messydates-1.0.0/messydates/R/convert_sequence.R | 27 messydates-1.0.0/messydates/R/data_battles.R | 5 messydates-1.0.0/messydates/R/messydates-defunct.R | 21 messydates-1.0.0/messydates/R/operate_arithmetic.R | 111 + messydates-1.0.0/messydates/R/operate_comparison.R |only messydates-1.0.0/messydates/R/operate_proportional.R | 41 messydates-1.0.0/messydates/R/operate_set.R | 18 messydates-1.0.0/messydates/R/operate_statements.R | 22 messydates-1.0.0/messydates/R/resolve_extrema.R |only messydates-1.0.0/messydates/R/resolve_tendency.R |only messydates-1.0.0/messydates/README.md | 677 ++-------- messydates-1.0.0/messydates/inst/figures/cheatsheet.pdf |binary messydates-1.0.0/messydates/man/battles.Rd | 6 messydates-1.0.0/messydates/man/class_mdate.Rd |only messydates-1.0.0/messydates/man/class_mduration.Rd |only messydates-1.0.0/messydates/man/class_methods.Rd |only messydates-1.0.0/messydates/man/coerce_from.Rd | 65 messydates-1.0.0/messydates/man/coerce_to.Rd | 63 messydates-1.0.0/messydates/man/component_annotate.Rd | 36 messydates-1.0.0/messydates/man/component_extract.Rd | 58 messydates-1.0.0/messydates/man/convert_contract.Rd | 11 messydates-1.0.0/messydates/man/convert_expand.Rd | 17 messydates-1.0.0/messydates/man/convert_sequence.Rd | 16 messydates-1.0.0/messydates/man/defunct.Rd | 15 messydates-1.0.0/messydates/man/figures/cheatsheet.png |binary messydates-1.0.0/messydates/man/figures/messydates_hexlogo.png |binary messydates-1.0.0/messydates/man/operate_arithmetic.Rd | 30 messydates-1.0.0/messydates/man/operate_inequalities.Rd | 16 messydates-1.0.0/messydates/man/operate_proportional.Rd | 15 messydates-1.0.0/messydates/man/operate_set.Rd | 18 messydates-1.0.0/messydates/man/operate_statements.Rd | 11 messydates-1.0.0/messydates/man/reexports.Rd |only messydates-1.0.0/messydates/man/resolve_extrema.Rd |only messydates-1.0.0/messydates/man/resolve_tendency.Rd |only messydates-1.0.0/messydates/tests/testthat/test-class_create.R | 8 messydates-1.0.0/messydates/tests/testthat/test-class_duration.R | 32 messydates-1.0.0/messydates/tests/testthat/test-class_make.R | 5 messydates-1.0.0/messydates/tests/testthat/test-coerce_from.R | 78 + messydates-1.0.0/messydates/tests/testthat/test-coerce_resolve.R | 50 messydates-1.0.0/messydates/tests/testthat/test-component_annotate.R | 34 messydates-1.0.0/messydates/tests/testthat/test-convert_contract.R | 4 messydates-1.0.0/messydates/tests/testthat/test-convert_expand.R | 79 - messydates-1.0.0/messydates/tests/testthat/test-convert_sequence.R |only messydates-1.0.0/messydates/tests/testthat/test-interoperability.R |only messydates-1.0.0/messydates/tests/testthat/test-operate_arithmetic.R | 46 messydates-1.0.0/messydates/tests/testthat/test-operate_operators.R | 115 + messydates-1.0.0/messydates/tests/testthat/test-operate_proportional.R | 60 messydates-1.0.0/messydates/tests/testthat/test-operate_set.R | 16 messydates-1.0.0/messydates/tests/testthat/test-separator-context.R |only messydates-1.0.0/messydates/tests/testthat/test-time-annotate.R |only messydates-1.0.0/messydates/tests/testthat/test-time-coerce.R |only messydates-1.0.0/messydates/tests/testthat/test-time-expand.R |only messydates-1.0.0/messydates/tests/testthat/test-time-extract.R |only messydates-1.0.0/messydates/tests/testthat/test-time-parse.R |only 76 files changed, 2423 insertions(+), 1055 deletions(-)
Title: Simulation Tools for Planning Vitamin D Studies
Description: Simulation tools for planning Vitamin D studies. Individual vitamin D status
profiles are simulated, modelling population heterogeneity in trial arms.
Exposures to infectious agents are generated, with infection depending on vitamin D status.
Author: Rebecca Mangan [aut],
Jason Wyse [aut, cre],
Lina Zgaga [aut]
Maintainer: Jason Wyse <wyseja@tcd.ie>
Diff between SimVitD versions 1.0.4 dated 2026-06-25 and 1.0.5 dated 2026-07-16
SimVitD-1.0.4/SimVitD/README.md |only SimVitD-1.0.5/SimVitD/DESCRIPTION | 6 +-- SimVitD-1.0.5/SimVitD/MD5 | 23 ++++++------ SimVitD-1.0.5/SimVitD/NEWS.md | 6 +++ SimVitD-1.0.5/SimVitD/R/infection.count.R | 4 +- SimVitD-1.0.5/SimVitD/R/power.calc.R | 2 - SimVitD-1.0.5/SimVitD/R/simvitd.util.functions.R | 36 +++++++++++--------- SimVitD-1.0.5/SimVitD/R/vitd.curve.R | 2 - SimVitD-1.0.5/SimVitD/build/vignette.rds |binary SimVitD-1.0.5/SimVitD/inst/doc/SimVitD.pdf |binary SimVitD-1.0.5/SimVitD/man/infection.count.Rd | 2 - SimVitD-1.0.5/SimVitD/man/power.calc.Rd | 7 ++- SimVitD-1.0.5/SimVitD/vignettes/SimVitD-vgnette.pdf |binary 13 files changed, 49 insertions(+), 39 deletions(-)
Title: Methods for Quantitative Magnetic Resonance Imaging ('qMRI')
Description: Implementation of methods for estimation of quantitative maps
from Multi-Parameter Mapping (MPM) acquisitions (Weiskopf et al. (2013)
<doi:10.3389/fnins.2013.00095>) and analysis of Inversion Recovery MRI data.
Usage of the package is described in
Polzehl and Tabelow (2023),
"Magnetic Resonance Brain Imaging", 2nd Edition, Chapter 6 and 7, Springer, Use R! Series.
<doi:10.1007/978-3-031-38949-8>.
J. Polzehl and K. Tabelow (2023), "Magnetic Resonance Brain Imaging - Modeling and Data Analysis Using R: Code and Data."
<doi:10.20347/WIAS.DATA.6> provides extensive example code and data.
Author: Joerg Polzehl [aut],
Karsten Tabelow [aut, cre],
WIAS Berlin [cph, fnd]
Maintainer: Karsten Tabelow <karsten.tabelow@wias-berlin.de>
Diff between qMRI versions 1.2.7.9 dated 2025-03-06 and 1.2.8 dated 2026-07-16
DESCRIPTION | 8 ++++---- MD5 | 31 ++++++++++++++++--------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/IRMRI-Example.R | 6 ++---- inst/doc/IRMRI-Example.Rnw | 15 ++++++++------- inst/doc/IRMRI-Example.pdf |binary inst/doc/qMRI-Example.R | 2 -- inst/doc/qMRI-Example.Rnw | 28 ++++++++++++++-------------- inst/doc/qMRI-Example.pdf |binary tests |only vignettes/IRMRI-Example-2.pdf |binary vignettes/IRMRI-Example-9.pdf |binary vignettes/IRMRI-Example.Rnw | 15 ++++++++------- vignettes/qMRI-Example-11.pdf |binary vignettes/qMRI-Example-8.pdf |binary vignettes/qMRI-Example.Rnw | 28 ++++++++++++++-------------- 17 files changed, 66 insertions(+), 67 deletions(-)
Title: Interactive Virtualized Data Explorer Grid Widget
Description: Provides an interactive, virtualized data explorer widget for 'R'.
Built on 'React' (via 'reactR') and 'htmlwidgets', it offers column-type
detection, multi-value checkbox filtering, sorting, column visibility
toggling, virtual scrolling for large datasets, and a full-viewport modal.
Includes 'dtsmartr_launch()' with an interactive, zero-code file upload wizard
using 'datamods'. Widgets can be embedded in 'R Markdown' / 'Quarto' documents,
'Shiny' applications, or exported as standalone HTML files via 'save_dtsmartr()'.
Author: Nikhil Wagh [aut, cre]
Maintainer: Nikhil Wagh <nmw1986@gmail.com>
Diff between dtsmartr versions 0.3.0 dated 2026-07-08 and 0.4.1 dated 2026-07-16
DESCRIPTION | 6 MD5 | 71 + R/dtsmartr.R | 15 README.md | 395 +-------- build/vignette.rds |binary inst/doc/code-generation.R | 4 inst/doc/code-generation.Rmd | 8 inst/doc/code-generation.html | 1368 +++++++++++++++++++++++++++++++ inst/doc/column-formatting.R | 19 inst/doc/column-formatting.Rmd | 6 inst/doc/column-formatting.html | 1285 +++++++++++++++++++++++++++++ inst/doc/customization-options.R |only inst/doc/customization-options.Rmd |only inst/doc/customization-options.html |only inst/doc/data-ingestion-launchers.R |only inst/doc/data-ingestion-launchers.Rmd |only inst/doc/data-ingestion-launchers.html |only inst/doc/filtering-queries.R | 4 inst/doc/filtering-queries.Rmd | 24 inst/doc/filtering-queries.html | 1394 ++++++++++++++++++++++++++++++++ inst/doc/getting-started.R | 20 inst/doc/getting-started.Rmd | 22 inst/doc/getting-started.html | 1320 ++++++++++++++++++++++++++++++ inst/doc/layout-customization.R |only inst/doc/layout-customization.Rmd |only inst/doc/layout-customization.html |only inst/doc/multi-column-sorting.R | 4 inst/doc/multi-column-sorting.Rmd | 42 inst/doc/multi-column-sorting.html | 1420 ++++++++++++++++++++++++++++++++- inst/doc/saving-reports.R |only inst/doc/saving-reports.Rmd |only inst/doc/saving-reports.html |only inst/htmlwidgets/dtsmartr.js | 2 inst/htmlwidgets/dtsmartr.js.map | 2 man/dtsmartr_options.Rd | 9 man/figures/profile_selection.png |only vignettes/code-generation.Rmd | 8 vignettes/column-formatting.Rmd | 6 vignettes/customization-options.Rmd |only vignettes/data-ingestion-launchers.Rmd |only vignettes/filtering-queries.Rmd | 24 vignettes/getting-started.Rmd | 22 vignettes/layout-customization.Rmd |only vignettes/multi-column-sorting.Rmd | 42 vignettes/saving-reports.Rmd |only 45 files changed, 7102 insertions(+), 440 deletions(-)
Title: Dynamic Shrinkage Process and Change Point Detection
Description: Provides efficient Markov chain Monte Carlo (MCMC) algorithms for
dynamic shrinkage processes, which extend global-local shrinkage priors to
the time series setting by allowing shrinkage to depend on its own past.
These priors yield locally adaptive estimates, useful for time series and
regression functions with irregular features. The package includes full MCMC
implementations for trend filtering using dynamic shrinkage on signal differences,
producing locally constant or linear fits with adaptive credible bands.
Also included are models with static shrinkage and normal-inverse-Gamma priors for comparison.
Additional tools cover dynamic regression with time-varying coefficients and
B-spline models with shrinkage on basis differences, allowing for flexible
curve-fitting with unequally spaced data. Some support for heteroscedastic errors,
outlier detection, and change point estimation.
Methods in this package are described in Kowal et al. (2019) <doi:10.1111/rssb.12325>,
Wu et al. [...truncated...]
Author: Daniel R. Kowal [aut, cph],
Haoxuan Wu [aut],
Toryn Schafer [aut, cre] ,
Jason B. Cho [aut],
David S. Matteson [aut]
Maintainer: Toryn Schafer <toryn27@gmail.com>
Diff between dsp versions 1.5.0 dated 2026-06-14 and 1.5.1 dated 2026-07-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/plotmethods.R | 20 ++++++++++---------- 4 files changed, 20 insertions(+), 16 deletions(-)
Title: Topological Data Analysis: Simplicial Complex
Description: Provides an implementation of simplicial complexes for
Topological Data Analysis (TDA). The package includes functions to
compute faces, boundary operators, Betti numbers, Euler characteristic,
and to construct simplicial complexes. It also implements persistent
homology, from building filtrations to computing persistence diagrams,
with the aim of helping readers understand the core concepts of
computational topology.
Methods are based on standard references in persistent homology such as
Zomorodian and Carlsson (2005) <doi:10.1007/s00454-004-1146-y> and
Chazal and Michel (2021) <doi:10.3389/frai.2021.667963>.
Author: ChiChien Wang [aut, cre, trl]
Maintainer: ChiChien Wang <kennywang2003@gmail.com>
Diff between SimplicialComplex versions 0.1.0 dated 2025-10-20 and 0.1.1 dated 2026-07-16
DESCRIPTION | 10 +-- MD5 | 25 ++++++--- NAMESPACE | 6 ++ R/Boundary.R | 15 ++--- R/Faces.R | 28 +++++------ R/FloodComplex.R |only R/Persistence.R | 99 +++++++++++++++++++++++++++++++++++++-- README.md | 59 +++++++---------------- inst |only man/as_filtration.Rd |only man/build_flood_filtration.Rd |only man/extract_persistence_pairs.Rd | 2 man/figures/App.png |binary man/flood_complex.Rd |only man/flood_persistence.Rd |only man/generate_landmarks.Rd |only man/persistence_pairs.Rd |only 17 files changed, 163 insertions(+), 81 deletions(-)
More information about SimplicialComplex at CRAN
Permanent link
Title: Analyze Multiple Exposure Realizations in Association Studies
Description: Analyze association studies with multiple realizations of a noisy or uncertain exposure. These can be obtained from e.g. a two-dimensional Monte Carlo dosimetry system (Simon et al 2015 <doi:10.1667/RR13729.1>) to characterize exposure uncertainty.
The implemented methods are regression calibration (Carroll et al. 2006 <doi:10.1201/9781420010138>), extended
regression calibration (Little et al. 2023 <doi:10.1038/s41598-023-42283-y>), Monte Carlo maximum
likelihood (Stayner et al. 2007 <doi:10.1667/RR0677.1>), frequentist model averaging (Kwon et al. 2023 <doi:10.1371/journal.pone.0290498>),
and Bayesian model averaging (Kwon et al. 2016 <doi:10.1002/sim.6635>). Supported model families are
Gaussian, binomial, multinomial, Poisson, proportional hazards, and conditional logistic.
Author: Sander Roberti [aut, cre] ,
William Wheeler [aut],
Deukwoo Kwon [aut] ,
Ruth Pfeiffer [ctb] ,
NCI [cph, fnd]
Maintainer: Sander Roberti <sander.roberti@nih.gov>
Diff between ameras versions 0.4.0 dated 2026-05-29 and 0.5.1 dated 2026-07-16
ameras-0.4.0/ameras/R/source.R |only ameras-0.5.1/ameras/DESCRIPTION | 10 ameras-0.5.1/ameras/MD5 | 156 ameras-0.5.1/ameras/NAMESPACE | 8 ameras-0.5.1/ameras/NEWS.md | 41 ameras-0.5.1/ameras/R/ameras.R | 177 ameras-0.5.1/ameras/R/amerasfit-class.R | 438 +- ameras-0.5.1/ameras/R/check.R | 353 + ameras-0.5.1/ameras/R/dose-lrt.R |only ameras-0.5.1/ameras/R/estimation.R | 468 +- ameras-0.5.1/ameras/R/formula-parsing.R | 219 - ameras-0.5.1/ameras/R/likelihoods.R | 12 ameras-0.5.1/ameras/R/methods-fma-bma.R | 1965 ++-------- ameras-0.5.1/ameras/R/methods-rc-mcml.R | 1372 ------ ameras-0.5.1/ameras/R/modifier-design.R |only ameras-0.5.1/ameras/R/optimization.R |only ameras-0.5.1/ameras/R/parameter-names.R |only ameras-0.5.1/ameras/R/timing.R |only ameras-0.5.1/ameras/R/utils.R | 571 +- ameras-0.5.1/ameras/README.md | 64 ameras-0.5.1/ameras/build/partial.rdb |binary ameras-0.5.1/ameras/build/vignette.rds |binary ameras-0.5.1/ameras/inst/doc/confidenceintervals.Rmd | 6 ameras-0.5.1/ameras/inst/doc/confidenceintervals.html | 284 - ameras-0.5.1/ameras/inst/doc/effectmodification.R |only ameras-0.5.1/ameras/inst/doc/effectmodification.Rmd |only ameras-0.5.1/ameras/inst/doc/effectmodification.html |only ameras-0.5.1/ameras/inst/doc/manualfma.R |only ameras-0.5.1/ameras/inst/doc/manualfma.Rmd |only ameras-0.5.1/ameras/inst/doc/manualfma.html |only ameras-0.5.1/ameras/inst/doc/modelfitting.R | 2 ameras-0.5.1/ameras/inst/doc/modelfitting.Rmd | 11 ameras-0.5.1/ameras/inst/doc/modelfitting.html | 1584 ++++---- ameras-0.5.1/ameras/inst/doc/parallelfma.R |only ameras-0.5.1/ameras/inst/doc/parallelfma.Rmd |only ameras-0.5.1/ameras/inst/doc/parallelfma.html |only ameras-0.5.1/ameras/inst/doc/relativeriskmodels.Rmd | 8 ameras-0.5.1/ameras/inst/doc/relativeriskmodels.html | 99 ameras-0.5.1/ameras/inst/doc/standardanalysis.R |only ameras-0.5.1/ameras/inst/doc/standardanalysis.Rmd |only ameras-0.5.1/ameras/inst/doc/standardanalysis.html |only ameras-0.5.1/ameras/inst/doc/transformations.Rmd | 10 ameras-0.5.1/ameras/inst/doc/transformations.html | 127 ameras-0.5.1/ameras/man/Rhat.Rd | 6 ameras-0.5.1/ameras/man/ameras-package.Rd | 3 ameras-0.5.1/ameras/man/ameras.Rd | 66 ameras-0.5.1/ameras/man/coef.Rd | 4 ameras-0.5.1/ameras/man/confint.Rd | 27 ameras-0.5.1/ameras/man/convergence.Rd |only ameras-0.5.1/ameras/man/data.Rd | 3 ameras-0.5.1/ameras/man/dose_lrt.Rd |only ameras-0.5.1/ameras/man/included_realizations.Rd | 14 ameras-0.5.1/ameras/man/plot.Rd | 13 ameras-0.5.1/ameras/man/print.Rd | 11 ameras-0.5.1/ameras/man/residuals.Rd | 9 ameras-0.5.1/ameras/man/summary.Rd | 57 ameras-0.5.1/ameras/man/vcov.Rd | 3 ameras-0.5.1/ameras/src/RcppExports.cpp | 16 ameras-0.5.1/ameras/src/ameras.cpp | 125 ameras-0.5.1/ameras/src/ameras_init.c | 44 ameras-0.5.1/ameras/tests/testthat/_snaps/CI.md | 149 ameras-0.5.1/ameras/tests/testthat/_snaps/gaussian.md | 26 ameras-0.5.1/ameras/tests/testthat/_snaps/poisson.md | 20 ameras-0.5.1/ameras/tests/testthat/helper-combinations.R | 2 ameras-0.5.1/ameras/tests/testthat/test-CI.R | 57 ameras-0.5.1/ameras/tests/testthat/test-amerasfit-accessors.R |only ameras-0.5.1/ameras/tests/testthat/test-binomial.R | 332 - ameras-0.5.1/ameras/tests/testthat/test-bma-one-chain.R |only ameras-0.5.1/ameras/tests/testthat/test-check-helpers.R |only ameras-0.5.1/ameras/tests/testthat/test-clogit.R | 113 ameras-0.5.1/ameras/tests/testthat/test-design-diagnostics.R |only ameras-0.5.1/ameras/tests/testthat/test-dose-lrt.R |only ameras-0.5.1/ameras/tests/testthat/test-ecdfplot.R |only ameras-0.5.1/ameras/tests/testthat/test-fma-assembler.R |only ameras-0.5.1/ameras/tests/testthat/test-fma-edge-cases.R |only ameras-0.5.1/ameras/tests/testthat/test-fma-future.R |only ameras-0.5.1/ameras/tests/testthat/test-gaussian.R | 2 ameras-0.5.1/ameras/tests/testthat/test-loglik-helpers.R |only ameras-0.5.1/ameras/tests/testthat/test-mcml-loglik-helpers.R |only ameras-0.5.1/ameras/tests/testthat/test-methods.R | 18 ameras-0.5.1/ameras/tests/testthat/test-missing-x-values.R |only ameras-0.5.1/ameras/tests/testthat/test-modifier-formulas.R |only ameras-0.5.1/ameras/tests/testthat/test-multinomial.R | 4 ameras-0.5.1/ameras/tests/testthat/test-optimization-helpers.R |only ameras-0.5.1/ameras/tests/testthat/test-parameter-names.R |only ameras-0.5.1/ameras/tests/testthat/test-poisson.R | 4 ameras-0.5.1/ameras/tests/testthat/test-proflik-helpers.R |only ameras-0.5.1/ameras/tests/testthat/test-prophaz.R | 75 ameras-0.5.1/ameras/tests/testthat/test-rc-mcml-output-contracts.R |only ameras-0.5.1/ameras/tests/testthat/test-reserved-names.R |only ameras-0.5.1/ameras/tests/testthat/test-resolve-data.R |only ameras-0.5.1/ameras/tests/testthat/test-source-helpers.R |only ameras-0.5.1/ameras/tests/testthat/test-spline-formulas.R |only ameras-0.5.1/ameras/tests/testthat/test-timing.R |only ameras-0.5.1/ameras/vignettes/confidenceintervals.Rmd | 6 ameras-0.5.1/ameras/vignettes/effectmodification.Rmd |only ameras-0.5.1/ameras/vignettes/manualfma.Rmd |only ameras-0.5.1/ameras/vignettes/modelfitting.Rmd | 11 ameras-0.5.1/ameras/vignettes/parallelfma.Rmd |only ameras-0.5.1/ameras/vignettes/relativeriskmodels.Rmd | 8 ameras-0.5.1/ameras/vignettes/standardanalysis.Rmd |only ameras-0.5.1/ameras/vignettes/transformations.Rmd | 10 102 files changed, 4352 insertions(+), 4871 deletions(-)
Title: Assessing Package Test Reliability and Quality
Description: A reliable and validated tool that calculates unit test coverage for R packages with standard testing frameworks and non-standard testing frameworks.
Author: Edward Gillian [cre, aut] ,
Hugo Bottois [aut] ,
Paulin Charliquart [aut],
Andre Couturier [aut],
Sanofi [cph, fnd]
Maintainer: Edward Gillian <edward.gillian-ext@sanofi.com>
Diff between test.assessr versions 2.1.2 dated 2026-06-10 and 2.1.3 dated 2026-07-16
DESCRIPTION | 8 MD5 | 60 NEWS.md | 9 R/generate_test_report.R | 4 R/get_package_coverage.R | 14 R/map_tests_stf.R | 65 R/run_covr_skip_nstf.R | 472 ++++++ R/run_covr_skip_stf.R | 39 man/check_covr_skip_testit.Rd | 18 man/convert_number_to_abbreviation.Rd | 2 man/convert_number_to_percent.Rd | 2 man/cov_env.Rd | 4 man/create_base_tests_coverage.Rd | 18 man/create_coverage_skip_stf.Rd | 10 man/create_nstf_covr_list.Rd | 18 man/create_tinytest_coverage.Rd | 36 man/get_nstf_test_path.Rd | 18 man/get_source_test_mapping_nstf.Rd | 18 man/map_test.Rd | 16 man/map_tests_stf.Rd | 21 man/nest_test.Rd | 10 man/prepare_tinytest_dev_includes.Rd |only man/prepare_tinytest_run_env.Rd |only man/restrict_test_paths_to_framework.Rd | 18 man/run_covr_skip_nstf.Rd | 18 man/run_covr_skip_stf.Rd | 10 tests/testthat/test-get_package_coverage.R | 58 tests/testthat/test-load_dependencies_into_env.R | 368 ++--- tests/testthat/test-map_tests_stf.R | 394 +++++ tests/testthat/test-run_covr_skip_nstf.R | 1592 ++++++++++++++++++----- tests/testthat/test-run_covr_skip_stf.R | 265 +++ tests/testthat/test-unittest_methods.R | 351 +++++ 32 files changed, 3245 insertions(+), 691 deletions(-)
Title: Quickly Get Datetime Data Ready for Analysis
Description: Transforms datetime data into a format ready for analysis.
It offers two core functionalities; aggregating data to a higher level interval
(thicken) and imputing records where observations were absent (pad).
Author: Edwin Thoen [aut, cre]
Maintainer: Edwin Thoen <edwinthoen@gmail.com>
Diff between padr versions 0.6.3 dated 2024-11-21 and 0.7.0 dated 2026-07-16
DESCRIPTION | 10 MD5 | 128 ++++---- NEWS.md | 24 + R/check_date_variables.R | 43 +- R/closest_weekday.R | 8 R/create_emrgency.R | 1 R/fill_functions.R | 120 ++++--- R/formatting_funcs.R | 69 ++-- R/get_interval.R | 93 +++-- R/helpers.R | 29 - R/pad.R | 191 +++++++----- R/pad_cust.R | 56 +-- R/pad_int.R | 42 +- R/span.R | 86 ++--- R/span_date.R | 40 +- R/subset_span.R | 10 R/thicken.R | 111 ++++--- R/thicken_cust.R | 29 - R/thicken_helpers.R | 63 +--- README.md | 10 build/vignette.rds |binary inst/doc/padr.R | 145 +++++---- inst/doc/padr.Rmd | 123 ++++--- inst/doc/padr.html | 168 ++++++---- inst/doc/padr_custom.R | 52 +-- inst/doc/padr_custom.Rmd | 48 +-- inst/doc/padr_custom.html | 83 +++-- inst/doc/padr_implementation.R | 19 - inst/doc/padr_implementation.Rmd | 17 - inst/doc/padr_implementation.html | 40 +- man/center_interval.Rd | 18 - man/fill_by_function.Rd | 21 - man/fill_by_prevalent.Rd | 17 - man/fill_by_value.Rd | 25 - man/format_interval.Rd | 17 - man/get_interval.Rd | 4 man/pad.Rd | 72 ++-- man/pad_cust.Rd | 9 man/pad_int.Rd | 26 - man/thicken.Rd | 41 +- man/thicken_cust.Rd | 9 src/RcppExports.cpp | 24 - src/round_down_core.cpp | 10 src/round_down_core_prev.cpp | 10 src/round_up_core.cpp | 8 src/round_up_core_prev.cpp | 8 tests/testthat/test_check_date_variables.R | 30 + tests/testthat/test_fill_functions.R | 69 ++-- tests/testthat/test_formatting_funcs.R | 148 ++++++--- tests/testthat/test_get_interval.R | 188 ++++++------ tests/testthat/test_helpers.R | 29 + tests/testthat/test_pad.R | 384 +++++++++++++++--------- tests/testthat/test_pad_cust.R | 65 ++-- tests/testthat/test_pad_int.R | 58 +-- tests/testthat/test_rond_core.R | 26 + tests/testthat/test_span.R | 116 ++++--- tests/testthat/test_span_date.R | 28 + tests/testthat/test_subset_span.R | 71 ++-- tests/testthat/test_thicken.R | 305 +++++++++++++------ tests/testthat/test_thicken_cust.R | 61 ++- tests/testthat/test_thicken_helpers.R | 72 ++-- tests/testthat/test_thicken_integration.R | 453 +++++++++++++++++++---------- vignettes/padr.Rmd | 123 ++++--- vignettes/padr_custom.Rmd | 48 +-- vignettes/padr_implementation.Rmd | 17 - 65 files changed, 2631 insertions(+), 1837 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word', 'RTF' and 'Microsoft
PowerPoint' documents from R. The package focuses on tabular and
graphical reporting from R; it also provides two functions that let
users get document content into data objects. A set of functions lets
add and remove images, tables and paragraphs of text in new or
existing documents. The package does not require any installation of
Microsoft products to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Stefan Moog [aut],
Mark Heckmann [aut] ,
ArData [cph],
Frank Hangler [ctb] ,
Liz Sander [ctb] ,
Anton Victorson [ctb] ,
Jon Calder [ctb] ,
John Harrold [ctb] ,
John Muschelli [ctb] ,
Bill Denney [ctb] ,
Nikolai Beck [ctb] ,
Gr [...truncated...]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.7.5 dated 2026-05-15 and 0.7.6 dated 2026-07-16
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 7 +++++++ R/core_properties.R | 6 +++--- R/read_docx.R | 1 - R/read_xlsx.R | 1 - 6 files changed, 18 insertions(+), 13 deletions(-)
Title: Statistical Tests and Utilities for Genetic Association
Description: A collection of statistical tests for genetic association studies and summary data based Mendelian randomization.
Author: Dr. Kai Wang [aut],
Kai Wang [cre]
Maintainer: Kai Wang <kai-wang@uiowa.edu>
Diff between iGasso versions 1.6.1 dated 2024-03-11 and 1.6.2 dated 2026-07-16
iGasso-1.6.1/iGasso/R/KAT.coin.R |only iGasso-1.6.1/iGasso/R/MFree.test.R |only iGasso-1.6.1/iGasso/man/KAT.coin.Rd |only iGasso-1.6.2/iGasso/DESCRIPTION | 26 ++++++++++++++++++-------- iGasso-1.6.2/iGasso/MD5 | 33 +++++++++++++++++++++------------ iGasso-1.6.2/iGasso/NAMESPACE | 6 +++++- iGasso-1.6.2/iGasso/R/KAT_coin.R |only iGasso-1.6.2/iGasso/R/MFree_test.R |only iGasso-1.6.2/iGasso/R/MR_het_test.R | 2 +- iGasso-1.6.2/iGasso/R/SKATplus.R | 12 +++++++----- iGasso-1.6.2/iGasso/R/VSTF.test.R | 10 ++++++---- iGasso-1.6.2/iGasso/R/data.R |only iGasso-1.6.2/iGasso/R/mBAplot.R |only iGasso-1.6.2/iGasso/R/tssmr.R |only iGasso-1.6.2/iGasso/R/vvplot.R |only iGasso-1.6.2/iGasso/data |only iGasso-1.6.2/iGasso/man/KAT_coin.Rd |only iGasso-1.6.2/iGasso/man/MFree.test.Rd | 12 +++++++----- iGasso-1.6.2/iGasso/man/MR_het_test.Rd | 2 +- iGasso-1.6.2/iGasso/man/SKATplus.Rd | 12 +++++++----- iGasso-1.6.2/iGasso/man/VSTF.test.Rd | 10 ++++++---- iGasso-1.6.2/iGasso/man/bmi.cad.Rd |only iGasso-1.6.2/iGasso/man/mBAplot.Rd |only iGasso-1.6.2/iGasso/man/tssmr.Rd |only iGasso-1.6.2/iGasso/man/vvplot.Rd |only 25 files changed, 79 insertions(+), 46 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) (fast) simulation of random fields, b) inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Flexible covariance models for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. Se [...truncated...]
Author: Moreno Bevilacqua [aut, cre, cph],
Victor Morales-Onate [ctb],
Francisco Cuevas-Pacheco [ctb],
Christian Caamano-Carrillo [ctb]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 2.2.5 dated 2026-06-30 and 2.2.6 dated 2026-07-16
DESCRIPTION | 8 MD5 | 90 +- NAMESPACE | 4 R/GeoAniso.R | 96 +- R/GeoCV.R | 51 + R/GeoCompositeLik2.R | 31 R/GeoCorrFct.r | 8 R/GeoCorrFct_Cop.R | 461 ++++++----- R/GeoFit.r | 28 R/GeoKrigWeights.R | 398 +++++----- R/GeoKrigloc.R | 46 - R/GeoKriglocWeights.R | 28 R/GeoNeighIndex.R | 204 +++-- R/GeoNeighborhood.R | 258 +++--- R/GeoPit.R | 620 ++++++++-------- R/GeoQQ.R | 52 - R/GeoResiduals.r | 61 - R/GeoScatterplot.R | 349 +++++---- R/GeoSimapprox.r | 1739 ++++++++++++++++++++++----------------------- R/GeoSimcond.R | 94 +- R/GeoTestIsotropy.R | 280 +++++-- R/GeoTestsupp_space.R | 427 +++++++---- R/GeoVarest.R | 244 +++--- R/GeoVarestbootstrap.R | 105 ++ R/GeoVariogram.r | 38 R/TB.R | 1235 ++++++++++++++++--------------- R/Utility_cov.R | 55 - R/sp2Geo.R | 92 +- man/GeoCV.Rd | 229 +++-- man/GeoFit.Rd | 230 +++-- man/GeoFit2.Rd | 15 man/GeoPit.Rd | 20 man/GeoQQ.Rd | 6 man/GeoSimapprox.Rd | 18 man/GeoTestIsotropy.Rd | 17 man/GeoTest_supp.Rd | 64 - man/GeoVarest.Rd | 79 +- man/GeoVarestbootstrap.Rd | 21 src/2F1_v2.c | 353 +++++---- src/2kummer.c | 127 ++- src/CompositeLikelihood2.c | 153 ++- src/CorrelationFunction.c | 442 ++++++----- src/Makevars | 1 src/TB.c | 49 - src/Utility.c | 13 src/weightedleastsquare.c | 81 +- 46 files changed, 5156 insertions(+), 3864 deletions(-)
Title: Summarize CRAN Check Results in the Terminal
Description: The CRAN check results and where your package stands in the
CRAN submission queue in your R terminal.
Author: Francois Michonneau [aut, cre],
Ben Bolker [ctb]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between foghorn versions 1.6.1 dated 2025-07-19 and 1.6.2 dated 2026-07-16
DESCRIPTION | 8 +- MD5 | 30 +++---- NAMESPACE | 1 NEWS.md | 17 ++++ R/cran_check_table.R | 1 R/cran_queue.R | 60 +++++++++++++-- R/foghorn.R | 23 +++++ README.md | 161 +++++++++-------------------------------- build/vignette.rds |binary inst/doc/foghorn.Rmd | 104 ++++++++++---------------- inst/doc/foghorn.html | 123 +++++++++++-------------------- man/cran_incoming.Rd | 11 +- man/foghorn.Rd | 5 + tests/testthat/test-foghorn.R | 12 ++- tests/testthat/test-incoming.R | 15 +++ vignettes/foghorn.Rmd | 104 ++++++++++---------------- 16 files changed, 308 insertions(+), 367 deletions(-)
Title: Assessing Package Risk Metrics
Description: A reliable and validated tool that captures detailed risk metrics
such as R 'CMD' check, test coverage, traceability matrix, documentation, dependencies,
reverse dependencies, suggested dependency analysis, repository data,
and enhanced reporting for R packages that are local or stored
on remote repositories such as GitHub, CRAN, and Bioconductor.
Author: Edward Gillian [cre, aut] ,
Hugo Bottois [aut] ,
Paulin Charliquart [aut],
Andre Couturier [aut],
Sanofi [cph, fnd]
Maintainer: Edward Gillian <edward.gillian-ext@sanofi.com>
Diff between risk.assessr versions 4.1.1 dated 2026-07-06 and 4.1.2 dated 2026-07-16
DESCRIPTION | 6 MD5 | 16 - NEWS.md | 9 inst/doc/Popularity_metric.html | 22 + inst/doc/dependency_tree.html | 90 ++++--- tests/testthat/test-assess_pkg.R | 143 ++++++++++++ tests/testthat/test-generate_html_report.R | 283 +++++++++++++++++++++++-- tests/testthat/test-get_session_dependencies.R | 214 ++++++++++++++++++ tests/testthat/test-write_summary_report.R | 163 +++++++++++++- 9 files changed, 859 insertions(+), 87 deletions(-)
Title: Improved Foreign Function Interface and Dynamic Bindings to C
Libraries
Description: Provides a cross-platform framework for dynamic binding of C libraries using a flexible Foreign Function Interface (FFI).
The FFI supports almost all fundamental C types, multiple calling conventions, symbolic access to foreign C struct/union data types and wrapping of R functions as C callback function pointers.
Dynamic bindings to shared C libraries are data-driven by cross-platform binding specifications using a compact plain text format; the package includes a 'DynPort' binding specification for 'SDL3' generated from current headers with 'porter'.
The package includes a variety of technology demos and OS-specific notes for installation of shared libraries. For the underlying methods and bundled 'DynCall' libraries, see Adler (2012) <doi:10.32614/RJ-2012-004> and Adler and Philipp (2008) <https://dyncall.org>.
Author: Daniel Adler [aut, cph],
Hongyuan Jia [aut, cre, cph],
Tassilo Philipp [ctb, cph],
Olivier Chafik [ctb, cph]
Maintainer: Hongyuan Jia <hongyuanjia@cqust.edu.cn>
Diff between rdyncall versions 0.10.0 dated 2026-07-15 and 0.10.1 dated 2026-07-16
BUGS | 14 DESCRIPTION | 6 MD5 | 338 NEWS.md | 6 README.md | 11 TODO | 58 inst/docs/ANNOUNCEMENT.txt | 568 inst/tinytest/test_arg_safeguards.R | 8 inst/tinytest/test_dynbind.R | 8 inst/tinytest/test_pack.R | 10 inst/tinytest/test_utils.R | 6 inst/tinytest/test_utils_str.R | 8 src/dyncall/AUTHORS | 14 src/dyncall/LICENSE | 36 src/dyncall/Makefile.embedded | 150 src/dyncall/Makefile.generic | 84 src/dyncall/Nmakefile | 90 src/dyncall/README | 238 src/dyncall/buildsys/cmake/Modules/FindDynCall.cmake | 86 src/dyncall/buildsys/cmake/Modules/FindDynCallback.cmake | 86 src/dyncall/buildsys/cmake/Modules/FindDynLoad.cmake | 90 src/dyncall/buildsys/cmake/Modules/UseLATEX.cmake | 1622 +- src/dyncall/buildsys/mk/app.mk | 60 src/dyncall/buildsys/mk/dirs.mk | 54 src/dyncall/buildsys/mk/epilog.mk | 60 src/dyncall/buildsys/mk/lib.mk | 46 src/dyncall/buildsys/mk/pcc.mk | 120 src/dyncall/buildsys/mk/prolog.mk | 56 src/dyncall/buildsys/nmake/common.nmake | 122 src/dyncall/buildsys/nmake/epilog.nmake | 56 src/dyncall/buildsys/nmake/prolog.nmake | 138 src/dyncall/buildsys/nmake/tool_clang.nmake | 114 src/dyncall/buildsys/nmake/tool_gcc.nmake | 184 src/dyncall/buildsys/nmake/tool_msvc.nmake | 150 src/dyncall/buildsys/scripts/batch-build-linux.sh | 30 src/dyncall/buildsys/scripts/batch-build-minix.sh | 26 src/dyncall/buildsys/scripts/batch-build-psp.sh | 28 src/dyncall/buildsys/scripts/conf-nds.bat | 82 src/dyncall/buildsys/scripts/elf-to-psp-eboot.sh | 38 src/dyncall/buildsys/scripts/setenv-cross-ios.sh | 16 src/dyncall/buildsys/scripts/setenv-sdk-ios.sh | 44 src/dyncall/buildsys/vs2005/dyncall/dyncall.vcproj | 490 src/dyncall/buildsys/vs2005/vs2005.sln | 40 src/dyncall/configure.bat | 310 src/dyncall/configure.rc | 376 src/dyncall/doc/Makefile.generic | 6 src/dyncall/doc/README-Cross.txt | 42 src/dyncall/doc/README.CMake | 164 src/dyncall/doc/README.Generic | 336 src/dyncall/doc/README.MacOSX | 62 src/dyncall/doc/README.Minix | 74 src/dyncall/doc/README.NDS | 50 src/dyncall/doc/README.PSP | 60 src/dyncall/doc/README.SunOS | 182 src/dyncall/doc/README.Windows | 148 src/dyncall/doc/README.embedded | 168 src/dyncall/doc/README.iOS | 154 src/dyncall/doc/disas_examples/arm.armhf.disas | 1548 +- src/dyncall/doc/disas_examples/arm.atpcs_arm.disas | 1820 +- src/dyncall/doc/disas_examples/arm.darwin_arm.disas | 470 src/dyncall/doc/disas_examples/arm.darwin_thumb.disas | 470 src/dyncall/doc/disas_examples/arm64.aapcs.disas | 4690 +++---- src/dyncall/doc/disas_examples/mips.eabi.disas | 3048 ++-- src/dyncall/doc/disas_examples/mips.o32.disas | 3944 +++--- src/dyncall/doc/disas_examples/mips64.n64.disas | 6918 +++++------ src/dyncall/doc/disas_examples/ppc.darwin.disas | 2246 +-- src/dyncall/doc/disas_examples/ppc.sysv.disas | 2878 ++-- src/dyncall/doc/disas_examples/ppc64.elfabi.disas | 1856 +- src/dyncall/doc/disas_examples/sparc.sparc.disas | 2328 +-- src/dyncall/doc/disas_examples/sparc64.sparc64.disas | 3670 ++--- src/dyncall/doc/disas_examples/x64.sysv.disas | 1908 +-- src/dyncall/doc/disas_examples/x86.cdecl.disas | 1696 +- src/dyncall/doc/disas_examples/x86.fastcall_borland.disas | 88 src/dyncall/doc/disas_examples/x86.fastcall_gnu.disas | 920 - src/dyncall/doc/disas_examples/x86.fastcall_ms.disas | 808 - src/dyncall/doc/disas_examples/x86.plan9call.disas | 792 - src/dyncall/doc/disas_examples/x86.stdcall.disas | 690 - src/dyncall/doc/disas_examples/x86.thiscall.disas | 146 src/dyncall/doc/disas_examples/x86.thiscall_ms.disas | 168 src/dyncall/doc/manual/CMakeLists.txt | 26 src/dyncall/doc/manual/Makefile.generic | 100 src/dyncall/doc/manual/Nmakefile | 62 src/dyncall/doc/manual/callconvs/callconv_arm64.tex | 330 src/dyncall/doc/manual/callconvs/callconv_mips32.tex | 456 src/dyncall/doc/manual/callconvs/callconv_mips64.tex | 378 src/dyncall/doc/manual/callconvs/callconv_ppc32.tex | 572 src/dyncall/doc/manual/callconvs/callconv_sparc32.tex | 228 src/dyncall/doc/manual/callconvs/callconv_sparc64.tex | 358 src/dyncall/doc/manual/callconvs/callconv_x64.tex | 574 src/dyncall/doc/manual/callconvs/callconv_x86.tex | 1632 +- src/dyncall/doc/manual/dyncall_logo.eps | 976 - src/dyncall/doc/manual/dyncall_logo.pdf | 1080 - src/dyncall/doc/manual/dyncall_logo.svg | 348 src/dyncall/doc/manual/dyncall_watermark.eps | 1270 +- src/dyncall/doc/manual/dyncall_watermark.svg | 192 src/dyncall/doc/manual/manual.tex | 404 src/dyncall/doc/manual/manual_bindings.tex | 660 - src/dyncall/doc/manual/manual_build.tex | 348 src/dyncall/doc/manual/manual_design.tex | 98 src/dyncall/doc/manual/manual_devel.tex | 270 src/dyncall/doc/manual/manual_dyncall_api.tex | 496 src/dyncall/doc/manual/manual_dyncallback_api.tex | 206 src/dyncall/doc/manual/manual_dynload_api.tex | 180 src/dyncall/doc/manual/manual_epilog.tex | 198 src/dyncall/doc/manual/manual_motivation.tex | 270 src/dyncall/doc/manual/manual_tex4ht.cfg | 434 src/dyncall/doc/manual/manual_title.tex | 186 src/dyncall/dyncall/CMakeLists.txt | 112 src/dyncall/dyncall/DynCallConfig.cmake | 6 src/dyncall/dyncall/Makefile.embedded | 40 src/dyncall/dyncall/Makefile.generic | 32 src/dyncall/dyncall/Nmakefile | 124 src/dyncall/dyncall/README-Developer.txt | 90 src/dyncall/dyncall/README.txt | 130 src/dyncall/dyncall/dyncall.3 | 918 - src/dyncall/dyncall/dyncall_call_arm32_arm.S | 160 src/dyncall/dyncall/dyncall_call_arm32_arm_armhf.S | 172 src/dyncall/dyncall/dyncall_call_arm32_thumb_apple.s | 160 src/dyncall/dyncall/dyncall_call_arm32_thumb_armhf.S | 226 src/dyncall/dyncall/dyncall_call_arm32_thumb_gas.s | 162 src/dyncall/dyncall/dyncall_call_mips_eabi_gas.s | 230 src/dyncall/dyncall/dyncall_call_mips_n32.S | 384 src/dyncall/dyncall/dyncall_call_mips_n64.S | 394 src/dyncall/dyncall/dyncall_call_mips_o32.S | 218 src/dyncall/dyncall/dyncall_call_ppc32.S | 586 src/dyncall/dyncall/dyncall_call_ppc64.S | 420 src/dyncall/dyncall/dyncall_call_sparc.s | 376 src/dyncall/dyncall/dyncall_call_sparc64.s | 354 src/dyncall/dyncall/dyncall_call_x64_generic_masm.asm | 212 src/dyncall/dyncall/dyncall_call_x86.S | 492 src/dyncall/dyncall/dyncall_call_x86_8a.s | 254 src/dyncall/dyncall/dyncall_call_x86_generic_masm.asm | 270 src/dyncall/dyncall/dyncall_call_x86_nasm.asm | 468 src/dyncall/dyncall/gen-masm.sh | 12 src/dyncall/dyncall/mkfile | 58 src/dyncall/dyncallback/CMakeLists.txt | 114 src/dyncall/dyncallback/DynCallbackConfig.cmake | 4 src/dyncall/dyncallback/Makefile.embedded | 30 src/dyncall/dyncallback/Makefile.generic | 40 src/dyncall/dyncallback/Nmakefile | 142 src/dyncall/dyncallback/dyncall_callback_arm32_arm_apple.s | 146 src/dyncall/dyncallback/dyncall_callback_arm32_arm_gas.S | 166 src/dyncall/dyncallback/dyncall_callback_arm32_thumb_apple.S | 64 src/dyncall/dyncallback/dyncall_callback_arm32_thumb_gas.S | 64 src/dyncall/dyncallback/dyncall_callback_mips_eabi_gas.s | 198 src/dyncall/dyncallback/dyncall_callback_mips_n32.S | 70 src/dyncall/dyncallback/dyncall_callback_mips_n64.S | 224 src/dyncall/dyncallback/dyncall_callback_mips_o32.S | 232 src/dyncall/dyncallback/dyncall_callback_ppc32.S | 288 src/dyncall/dyncallback/dyncall_callback_ppc32_apple.s | 312 src/dyncall/dyncallback/dyncall_callback_ppc64.S | 340 src/dyncall/dyncallback/dyncall_callback_sparc32.s | 162 src/dyncall/dyncallback/dyncall_callback_sparc64.s | 228 src/dyncall/dyncallback/dyncall_callback_x64.S | 412 src/dyncall/dyncallback/dyncall_callback_x64_masm.asm | 204 src/dyncall/dyncallback/dyncall_callback_x86.S | 224 src/dyncall/dyncallback/dyncall_callback_x86_8a.s | 200 src/dyncall/dyncallback/dyncall_callback_x86_masm.asm | 128 src/dyncall/dyncallback/dyncallback.3 | 836 - src/dyncall/dyncallback/gen-masm.sh | 12 src/dyncall/dyncallback/mkfile | 58 src/dyncall/dynload/CMakeLists.txt | 50 src/dyncall/dynload/DynLoadConfig.cmake | 6 src/dyncall/dynload/Makefile.embedded | 44 src/dyncall/dynload/Makefile.generic | 36 src/dyncall/dynload/Nmakefile | 114 src/dyncall/dynload/README.txt | 226 src/dyncall/dynload/dynload.3 | 268 src/dyncall/mkfile | 72 tests/tinytest.R | 6 170 files changed, 37929 insertions(+), 37908 deletions(-)
Title: Power Analysis for PLS Classification
Description: It estimates power and sample size for Partial Least Squares-based methods described in Andreella, et al., (2024), <doi:10.48550/arXiv.2403.10289>.
Author: Angela Andreella [aut, cre]
Maintainer: Angela Andreella <angela.andreella@unive.it>
Diff between powerPLS versions 0.2.1 dated 2025-03-05 and 0.2.2 dated 2026-07-16
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Uncertainty Analysis in Dynamic Site and Slope Response
Description: Implements a four-stage pipeline for probabilistic seismic
performance analysis of slopes and embankments. The package takes a
uniform-hazard spectrum at multiple return periods as input (any
source) and produces: (1) synthetic soil profile generation and
fundamental period estimation from USCS classification via Ishihara's
small-strain shear-modulus model and the inhomogeneous truncated
shear-beam theory of Gazetas and Dakoulas; (2) nonlinear site
amplification using the NGA-East ergodic site-response models
(Stewart et al. (2020) <doi:10.1177/8755293019878185> and
Hashash et al. (2020) <doi:10.1177/8755293019878193>, with the
2017 PEER-report generation retained as an option), with
inter-period correlation via
Baker & Jayaram (2008) <doi:10.1193/1.2857544>; (3) Monte Carlo
ensemble of six empirical Newmark sliding-block displacement models
(Ambraseys & Menu (1988) <doi:10.1002/eqe.4290160704>,
Jibson (2007) <doi:10.1016/j.enggeo.2007.01.013>,
Say [...truncated...]
Author: Alejandro Verri Kozlowski [aut, cre, cph]
Maintainer: Alejandro Verri Kozlowski <averri@fi.uba.ar>
Diff between newmark versions 1.1.0 dated 2026-05-19 and 1.3.0 dated 2026-07-16
newmark-1.1.0/newmark/build/partial.rdb |only newmark-1.1.0/newmark/inst/cran-release.R |only newmark-1.1.0/newmark/inst/install.R |only newmark-1.3.0/newmark/DESCRIPTION | 17 - newmark-1.3.0/newmark/MD5 | 115 +++---- newmark-1.3.0/newmark/NAMESPACE | 6 newmark-1.3.0/newmark/NEWS.md | 158 ++++++++++ newmark-1.3.0/newmark/R/CylinderRoots.R | 6 newmark-1.3.0/newmark/R/Dn_models.R | 56 ++- newmark-1.3.0/newmark/R/F_models.R | 211 ++++++++++++-- newmark-1.3.0/newmark/R/Vs30toSID.R | 2 newmark-1.3.0/newmark/R/approx.spline.R | 2 newmark-1.3.0/newmark/R/buildGMDP.R | 2 newmark-1.3.0/newmark/R/checkUHS.R | 2 newmark-1.3.0/newmark/R/designUHS.R | 53 ++- newmark-1.3.0/newmark/R/fitDnCurve.R | 95 +++--- newmark-1.3.0/newmark/R/fitDnModel.R | 28 + newmark-1.3.0/newmark/R/fitModel.Ts.R | 34 +- newmark-1.3.0/newmark/R/fitSaF.R | 60 ++- newmark-1.3.0/newmark/R/fitSaFMixture.R |only newmark-1.3.0/newmark/R/fitScenarios.R |only newmark-1.3.0/newmark/R/geSiteTable.R | 12 newmark-1.3.0/newmark/R/getDnKy.R | 2 newmark-1.3.0/newmark/R/getKyLimits.R | 2 newmark-1.3.0/newmark/R/interpolateSaTable.R | 2 newmark-1.3.0/newmark/R/invertDnDraws.R | 8 newmark-1.3.0/newmark/R/local_vars.R | 3 newmark-1.3.0/newmark/R/rhoBJ.R | 4 newmark-1.3.0/newmark/R/sysdata.rda |binary newmark-1.3.0/newmark/README.md | 4 newmark-1.3.0/newmark/data/SiteClass.rda |binary newmark-1.3.0/newmark/inst/CITATION | 2 newmark-1.3.0/newmark/inst/WORDLIST | 28 + newmark-1.3.0/newmark/inst/doc/dynamic-site-response.Rmd | 44 ++ newmark-1.3.0/newmark/inst/doc/dynamic-site-response.html | 45 ++ newmark-1.3.0/newmark/inst/doc/ensemble-formulation.Rmd | 48 ++- newmark-1.3.0/newmark/inst/doc/ensemble-formulation.html | 50 ++- newmark-1.3.0/newmark/inst/doc/newmark-quickstart.html | 84 ++--- newmark-1.3.0/newmark/inst/doc/pipeline.Rmd | 7 newmark-1.3.0/newmark/inst/doc/pipeline.html | 22 - newmark-1.3.0/newmark/man/CylinderRoots.Rd | 6 newmark-1.3.0/newmark/man/Dn_BM19.Rd | 20 - newmark-1.3.0/newmark/man/Dn_JB07.Rd | 7 newmark-1.3.0/newmark/man/Dn_SR08.Rd | 10 newmark-1.3.0/newmark/man/F_ST17.Rd | 38 +- newmark-1.3.0/newmark/man/F_ST20.Rd |only newmark-1.3.0/newmark/man/SaF_ST17.Rd | 15 newmark-1.3.0/newmark/man/checkUHS.Rd | 2 newmark-1.3.0/newmark/man/designUHS.Rd | 21 + newmark-1.3.0/newmark/man/fitDnCurve.Rd | 19 - newmark-1.3.0/newmark/man/fitDnModel.Rd | 8 newmark-1.3.0/newmark/man/fitDnScenario.Rd |only newmark-1.3.0/newmark/man/fitDnScenarios.Rd |only newmark-1.3.0/newmark/man/fitKmaxScenario.Rd |only newmark-1.3.0/newmark/man/fitKmaxScenarios.Rd |only newmark-1.3.0/newmark/man/fitModel.Ts.Rd | 15 newmark-1.3.0/newmark/man/fitSaF.Rd | 35 +- newmark-1.3.0/newmark/man/fitSaFMixture.Rd |only newmark-1.3.0/newmark/man/interpolateSaTable.Rd | 2 newmark-1.3.0/newmark/man/invertDnDraws.Rd | 6 newmark-1.3.0/newmark/man/rhoBJ.Rd | 5 newmark-1.3.0/newmark/vignettes/dynamic-site-response.Rmd | 44 ++ newmark-1.3.0/newmark/vignettes/ensemble-formulation.Rmd | 48 ++- newmark-1.3.0/newmark/vignettes/pipeline.Rmd | 7 64 files changed, 1106 insertions(+), 416 deletions(-)
More information about modelimportance at CRAN
Permanent link
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt' (<DOI:10.32614/CRAN.package.mlt>, <DOI:10.32614/CRAN.package.mlt.docreg>).
Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Barbanti and Hothorn, 2022,
<DOI:10.1093/biostatistics/kxac048>) and a tutorial explains applications in survival analysis
(Siegfried et al., 2025, <DOI:10.48550/arXiv.2402.06428>). Multivariate conditional transformation models
(Klein et al, 2022, <DOI:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023,
<DOI:10.108 [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Luisa Barbanti [ctb] ,
Sandra Siegfried [aut] ,
Lucas Kook [aut] ,
Susanne Dandl [ctb] ,
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 1.4-3 dated 2026-06-05 and 1.4-4 dated 2026-07-16
DESCRIPTION | 9 -- MD5 | 34 +++---- R/mmlt.R | 10 +- build/partial.rdb |binary build/vignette.rds |binary demo/SCI_ePolr.R | 4 demo/survtram.R | 59 ------------- inst/NEWS.Rd | 7 + inst/doc/NAMI.pdf |binary inst/doc/mtram.pdf |binary inst/doc/survtram.Rnw | 116 +++++++++++++-------------- inst/doc/survtram.pdf |binary inst/doc/tram.pdf |binary vignettes/survtram-COXME-margsurv-plot-1.pdf |binary vignettes/survtram-HTECOX-DFS-plot-1.pdf |binary vignettes/survtram-TVAR-DFS-plot-1.pdf |binary vignettes/survtram-TVAR-iDFS-plot-1.pdf |binary vignettes/survtram.Rnw | 116 +++++++++++++-------------- 18 files changed, 155 insertions(+), 200 deletions(-)
Title: Computation of Node and Path-Level Risk Scores in Scientific
Models
Description: It leverages the network-like architecture of scientific models together with software quality metrics to identify chains of function calls that are more prone to generating and propagating errors. It operates on tbl_graph objects representing call dependencies between functions (callers and callees) and computes risk scores for individual functions and for paths (sequences of function calls) based on cyclomatic complexity, in-degree and betweenness centrality. The package supports variance-based uncertainty and sensitivity analyses after Puy et al. (2022) <doi:10.18637/jss.v102.i05> to assess how risk scores change under alternative risk definitions.
Author: Arnald Puy [aut, cre]
Maintainer: Arnald Puy <arnald.puy@pm.me>
Diff between softwareRisk versions 0.2.0 dated 2026-04-04 and 0.3.0 dated 2026-07-16
DESCRIPTION | 13 MD5 | 77 +- NAMESPACE | 24 NEWS.md | 99 +++ R/all_paths_fun.R | 13 R/call_graph_fun.R |only R/fix_portfolio_fun.R |only R/gini_index_fun.R | 6 R/node_exposure_fun.R |only R/path_fix_heatmap.R | 2 R/path_uncertainty_plot.R | 2 R/plot_top_paths_fun.R | 21 R/rank_robustness_fun.R |only R/sensitivity_plot_fun.R |only R/slope_fun.R | 14 R/uncertainty_fun.R | 77 +- README.md | 29 inst/CITATION | 4 inst/WORDLIST | 32 - inst/doc/softwareRisk.R | 85 ++ inst/doc/softwareRisk.Rmd | 182 +++++- inst/doc/softwareRisk.html | 736 +++++++++++++++---------- inst/extdata/vignette-pdf/references_pdf.bib | 20 inst/extdata/vignette-pdf/softwareRisk_pdf.pdf |binary man/all_paths_fun.Rd | 4 man/call_graph_fun.Rd |only man/fix_portfolio_fun.Rd |only man/gini_index_fun.Rd | 3 man/node_exposure_fun.Rd |only man/plot_top_paths_fun.Rd | 7 man/rank_robustness_fun.Rd |only man/rank_robustness_plot.Rd |only man/read_call_graph.Rd |only man/risk_ua_sa_fun.Rd | 1 man/sensitivity_plot_fun.Rd |only man/slope_fun.Rd | 5 man/uncertainty_fun.Rd | 8 tests/testthat/test-all_paths_fun.R | 19 tests/testthat/test-call_graph_fun.R |only tests/testthat/test-fix_portfolio_fun.R |only tests/testthat/test-gini_index_fun.R | 4 tests/testthat/test-node_exposure_fun.R |only tests/testthat/test-rank_robustness_fun.R |only tests/testthat/test-sensitivity_plot_fun.R |only tests/testthat/test-slope_fun.R | 11 tests/testthat/test-uncertainty_fun.R | 30 + vignettes/references.bib | 20 vignettes/softwareRisk.Rmd | 182 +++++- 48 files changed, 1274 insertions(+), 456 deletions(-)
Title: Database Storage of Genotype Probabilities for QTL Mapping
Description: Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.
Author: Karl W Broman [aut, cre] ,
Brian S Yandell [aut] ,
Petr Simecek [aut]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtl2fst versions 0.30 dated 2024-11-23 and 0.32 dated 2026-07-16
DESCRIPTION | 17 +- MD5 | 16 +- NEWS.md | 9 + R/cluster_util.R | 2 R/qtl2fst-package.R |only README.md | 27 +++ build/vignette.rds |binary inst/doc/qtl2fst.html | 331 +++++++++++++++++++++++++++---------------------- man/fst_extract.Rd | 4 man/qtl2fst-package.Rd |only 10 files changed, 236 insertions(+), 170 deletions(-)
Title: Linear Mixed-Effects Models using 'Eigen' and S4
Description: Fit linear and generalized linear mixed-effects models. The
models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using
the 'Eigen' C++ library for numerical linear algebra and
'RcppEigen' "glue".
Author: Douglas Bates [aut] ,
Martin Maechler [aut] ,
Ben Bolker [cre, aut] ,
Steven Walker [aut] ,
Anna Ly [aut] ,
Mikael Jagan [aut] ,
Rune Haubo Bojesen Christensen [ctb] ,
Henrik Singmann [ctb] ,
Bin Dai [ctb],
Fabian Scheipl [ctb] ,
Gabor Grothendieck [ [...truncated...]
Maintainer: Ben Bolker <bbolker+lme4@gmail.com>
Diff between lme4 versions 2.0-1 dated 2026-03-05 and 2.0-6 dated 2026-07-16
lme4-2.0-1/lme4/tests/testthat/test-summary_testlevel_1.rda |only lme4-2.0-6/lme4/DESCRIPTION | 34 lme4-2.0-6/lme4/MD5 | 164 +-- lme4-2.0-6/lme4/NAMESPACE | 28 lme4-2.0-6/lme4/R/AllClass.R | 2 lme4-2.0-6/lme4/R/GHrule.R | 6 lme4-2.0-6/lme4/R/allFit.R | 19 lme4-2.0-6/lme4/R/bootMer.R | 7 lme4-2.0-6/lme4/R/deriv.R | 2 lme4-2.0-6/lme4/R/lmList.R | 16 lme4-2.0-6/lme4/R/lmer.R | 43 lme4-2.0-6/lme4/R/methods.R | 5 lme4-2.0-6/lme4/R/modular.R | 370 +++---- lme4-2.0-6/lme4/R/plot.R | 35 lme4-2.0-6/lme4/R/predict.R | 39 lme4-2.0-6/lme4/R/profile.R | 57 - lme4-2.0-6/lme4/R/reformulas_imports.R | 12 lme4-2.0-6/lme4/R/simulate.formula.R | 17 lme4-2.0-6/lme4/R/utilities.R | 65 - lme4-2.0-6/lme4/build/partial.rdb |binary lme4-2.0-6/lme4/build/vignette.rds |binary lme4-2.0-6/lme4/inst/NEWS.Rd | 115 ++ lme4-2.0-6/lme4/inst/doc/PLSvGLS.R | 2 lme4-2.0-6/lme4/inst/doc/PLSvGLS.pdf |binary lme4-2.0-6/lme4/inst/doc/Theory.pdf |binary lme4-2.0-6/lme4/inst/doc/autoscale.html | 5 lme4-2.0-6/lme4/inst/doc/covariance_structures.R | 239 ---- lme4-2.0-6/lme4/inst/doc/covariance_structures.Rmd | 370 ------- lme4-2.0-6/lme4/inst/doc/covariance_structures.html | 524 +--------- lme4-2.0-6/lme4/inst/doc/glmer.R |only lme4-2.0-6/lme4/inst/doc/glmer.Rnw |only lme4-2.0-6/lme4/inst/doc/glmer.pdf |only lme4-2.0-6/lme4/inst/doc/lmer.R | 10 lme4-2.0-6/lme4/inst/doc/lmer.Rnw | 10 lme4-2.0-6/lme4/inst/doc/lmer.pdf |binary lme4-2.0-6/lme4/inst/doc/lmerperf.html | 4 lme4-2.0-6/lme4/inst/extra_docs |only lme4-2.0-6/lme4/inst/testdata/glmmTMB_glmer_ar1_comparison.R |only lme4-2.0-6/lme4/inst/testdata/glmmTMB_glmer_ar1_comparison.rds |only lme4-2.0-6/lme4/inst/tinytest |only lme4-2.0-6/lme4/inst/vignette_data |only lme4-2.0-6/lme4/man/allFit.Rd | 27 lme4-2.0-6/lme4/man/bootMer.Rd | 26 lme4-2.0-6/lme4/man/deviance.Rd |only lme4-2.0-6/lme4/man/getME.Rd | 110 +- lme4-2.0-6/lme4/man/glmer.Rd | 17 lme4-2.0-6/lme4/man/influence.merMod.Rd | 25 lme4-2.0-6/lme4/man/lmList.Rd | 12 lme4-2.0-6/lme4/man/lmer.Rd | 43 lme4-2.0-6/lme4/man/merMod-class.Rd | 2 lme4-2.0-6/lme4/man/profile-methods.Rd | 27 lme4-2.0-6/lme4/man/salamander.Rd | 6 lme4-2.0-6/lme4/man/simulate.merMod.Rd | 10 lme4-2.0-6/lme4/src/predModule.cpp | 32 lme4-2.0-6/lme4/tests/HSAURtrees.R | 2 lme4-2.0-6/lme4/tests/agridat_gotway.R | 4 lme4-2.0-6/lme4/tests/bootMer.R | 9 lme4-2.0-6/lme4/tests/boundary.R | 6 lme4-2.0-6/lme4/tests/elston.R | 6 lme4-2.0-6/lme4/tests/glmer-1.R | 6 lme4-2.0-6/lme4/tests/glmmExt.R | 4 lme4-2.0-6/lme4/tests/lmer-1.R | 2 lme4-2.0-6/lme4/tests/profile-tst.R | 12 lme4-2.0-6/lme4/tests/testcrab.R | 4 lme4-2.0-6/lme4/tests/testthat/_problems |only lme4-2.0-6/lme4/tests/testthat/test-allFit.R | 48 lme4-2.0-6/lme4/tests/testthat/test-covariance_glmer.R |only lme4-2.0-6/lme4/tests/testthat/test-covariance_structures.R | 44 lme4-2.0-6/lme4/tests/testthat/test-debug.R |only lme4-2.0-6/lme4/tests/testthat/test-formulaEval.R | 12 lme4-2.0-6/lme4/tests/testthat/test-glmFamily.R | 24 lme4-2.0-6/lme4/tests/testthat/test-glmernb.R | 2 lme4-2.0-6/lme4/tests/testthat/test-isSingular.R | 9 lme4-2.0-6/lme4/tests/testthat/test-lmList.R | 69 + lme4-2.0-6/lme4/tests/testthat/test-lmer.R | 8 lme4-2.0-6/lme4/tests/testthat/test-methods.R | 100 + lme4-2.0-6/lme4/tests/testthat/test-predict.R | 2 lme4-2.0-6/lme4/tests/testthat/test-ranef.R | 4 lme4-2.0-6/lme4/tests/testthat/test-reformulas-import.R | 2 lme4-2.0-6/lme4/tests/testthat/test-resids.R | 2 lme4-2.0-6/lme4/tests/testthat/test-simulate_formula.R | 30 lme4-2.0-6/lme4/tests/testthat/test-utils.R | 2 lme4-2.0-6/lme4/vignettes/covariance_structures.Rmd | 370 ------- lme4-2.0-6/lme4/vignettes/cplot.R |only lme4-2.0-6/lme4/vignettes/glmer.Rnw |only lme4-2.0-6/lme4/vignettes/glmer.bib |only lme4-2.0-6/lme4/vignettes/jsslogo.jpg |only lme4-2.0-6/lme4/vignettes/lmer.Rnw | 10 88 files changed, 1441 insertions(+), 1889 deletions(-)
More information about DiscreteMorseR at CRAN
Permanent link
Title: Tidy Functional Data Wrangling and Visualization
Description: Represent, visualize, describe and wrangle functional data
in tidy data frames, building on the 'tf' package. Provides data types
for functional observations that work as columns in data frames,
enabling manipulation with 'dplyr' verbs and visualization with
'ggplot2' geoms designed for functional data.
Author: Fabian Scheipl [aut, cre, cph] ,
Jeff Goldsmith [aut],
Julia Wrobel [aut] ,
Maximilian Muecke [ctb]
Maintainer: Fabian Scheipl <fabian.scheipl@googlemail.com>
Diff between tidyfun versions 0.1.2 dated 2026-04-24 and 0.2.0 dated 2026-07-16
DESCRIPTION | 12 MD5 | 94 ++++--- NAMESPACE | 4 NEWS.md | 17 + R/autoplot.R | 71 +++++ R/geom-fboxplot.R | 5 R/geom-spaghetti.R | 34 ++ R/gglasagna.R | 1 R/tf-ggplot.R | 379 ++++++++++++++++++++++++++---- R/tidyr.R | 61 ++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/x01_tf_Vectors.Rmd | 4 inst/doc/x01_tf_Vectors.html | 13 - inst/doc/x02_Conversion.html | 8 inst/doc/x03_Data_Wrangling.html | 4 inst/doc/x04_Visualization.R | 28 ++ inst/doc/x04_Visualization.Rmd | 53 ++++ inst/doc/x04_Visualization.html | 347 ++++++++++++++++----------- inst/doc/x05_Advice.html | 4 inst/doc/x06_Registration.html | 52 ++-- inst/doc/x07_Vector-valued_Functions.R |only inst/doc/x07_Vector-valued_Functions.Rmd |only inst/doc/x07_Vector-valued_Functions.html |only man/add_tf_aes_to_mapping.Rd | 14 + man/autoplot.tf.Rd | 7 man/autoplot.tf_mv.Rd |only man/build_tf_layer_data.Rd | 3 man/build_tf_mv_layer_data.Rd |only man/chf_df.Rd | 2 man/dti_df.Rd | 2 man/ggcapellini.Rd | 9 man/ggerrorband.Rd | 2 man/ggfboxplot.Rd | 4 man/gglasagna.Rd | 5 man/ggspaghetti.Rd | 39 --- man/reexports.Rd | 2 man/tf_evaluate.data.frame.Rd | 10 man/tf_gather.Rd | 10 man/tf_ggplot.Rd | 19 + man/tf_nest.Rd | 12 man/tf_spread.Rd | 10 man/tf_unnest.Rd | 16 - man/tidyfun-package.Rd | 1 tests/testthat/Rplots.pdf |binary tests/testthat/helper-tf-ggplot.R | 26 ++ tests/testthat/test-tf-ggplot-mv.R |only tests/testthat/test-tidyr.R | 82 ++++++ vignettes/references.bib |only vignettes/x01_tf_Vectors.Rmd | 4 vignettes/x04_Visualization.Rmd | 53 ++++ vignettes/x07_Vector-valued_Functions.Rmd |only 52 files changed, 1165 insertions(+), 358 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' family of packages
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 3.2-3 dated 2026-05-10 and 3.2-4 dated 2026-07-16
DESCRIPTION | 8 +++--- MD5 | 20 +++++++-------- NAMESPACE | 2 + NEWS | 15 +++++++++++ R/utilarg.R | 54 ++++++++++++++++++++++++++++++++++++++++- R/utilseq.R | 4 +-- inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/check.1.integer.Rd | 7 +++-- man/spatstat.utils-internal.Rd | 2 + tests/numerical.R | 7 +++++ 11 files changed, 102 insertions(+), 19 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Permutation Conditional Random Tests
Description: It provides functions to perform permutation conditional random one-sample and two-samples t-tests in a multivariate framework.
Author: Angela Andreella [aut, cre]
Maintainer: Angela Andreella <angela.andreella@unive.it>
Diff between pecora versions 0.1.2 dated 2025-01-09 and 0.1.3 dated 2026-07-16
DESCRIPTION | 14 ++--- MD5 | 6 +- R/RcppExports.R | 22 ++++---- R/twoSamples.R | 140 ++++++++++++++++++++++++++++---------------------------- 4 files changed, 91 insertions(+), 91 deletions(-)
Title: Simulation-Based Assessment of Covariate Adjustment in
Randomized Trials
Description: Monte Carlo simulation framework for different randomized clinical trial designs with a special emphasis on estimators based on covariate adjustment.
Author: Benedikt Sommer [aut, cre],
Klaus K. Holst [aut],
Foroogh Shamsi [aut]
Maintainer: Benedikt Sommer <benediktsommer92@gmail.com>
Diff between carts versions 0.1.0 dated 2025-11-13 and 0.2.0 dated 2026-07-16
carts-0.1.0/carts/build/partial.rdb |only carts-0.1.0/carts/man/outcome_shared.Rd |only carts-0.1.0/carts/vignettes/gettingstarted_files |only carts-0.1.0/carts/vignettes/param_files |only carts-0.2.0/carts/DESCRIPTION | 38 - carts-0.2.0/carts/LICENSE |only carts-0.2.0/carts/MD5 | 77 +- carts-0.2.0/carts/NEWS.md | 8 carts-0.2.0/carts/R/Trial.R | 12 carts-0.2.0/carts/R/carts-package.R | 14 carts-0.2.0/carts/R/estimators.R | 48 - carts-0.2.0/carts/R/optimization.R | 16 carts-0.2.0/carts/R/outcome_models.R | 134 +-- carts-0.2.0/carts/R/trial_run.R | 6 carts-0.2.0/carts/README.md | 7 carts-0.2.0/carts/build/vignette.rds |binary carts-0.2.0/carts/inst/README.Rmd | 5 carts-0.2.0/carts/inst/README.md | 9 carts-0.2.0/carts/inst/doc/gettingstarted.html | 11 carts-0.2.0/carts/inst/doc/param.html | 4 carts-0.2.0/carts/inst/tinytest/test_Trial.R | 1 carts-0.2.0/carts/inst/tinytest/test_covar_sim.R | 3 carts-0.2.0/carts/inst/tinytest/test_distributions.R | 2 carts-0.2.0/carts/inst/tinytest/test_estimators.R | 7 carts-0.2.0/carts/inst/tinytest/test_optimization.R | 2 carts-0.2.0/carts/inst/tinytest/test_outcome_models.R | 16 carts-0.2.0/carts/inst/tinytest/test_trial_run.R | 1 carts-0.2.0/carts/inst/tinytest/test_utils.R | 2 carts-0.2.0/carts/man/Trial.Rd | 640 ++++++++---------- carts-0.2.0/carts/man/bisection.Rd | 4 carts-0.2.0/carts/man/carts-package.Rd | 14 carts-0.2.0/carts/man/est_adj.Rd | 10 carts-0.2.0/carts/man/est_glm.Rd | 18 carts-0.2.0/carts/man/optim_sa.Rd | 6 carts-0.2.0/carts/man/outcome_binary.Rd | 15 carts-0.2.0/carts/man/outcome_continuous.Rd | 15 carts-0.2.0/carts/man/outcome_count.Rd | 15 carts-0.2.0/carts/man/outcome_lp.Rd | 5 carts-0.2.0/carts/man/outcome_phreg.Rd | 52 + carts-0.2.0/carts/man/outcome_recurrent.Rd | 4 carts-0.2.0/carts/man/trial.estimates-class.Rd | 2 41 files changed, 609 insertions(+), 614 deletions(-)
Title: Build Species Distribution Modeling using 'caret'
Description: Use machine learning algorithms and advanced geographic information system tools to
build Species Distribution Modeling in a extensible and modern fashion.
Author: Luiz Fernando Esser [aut, cre, cph] ,
Reginaldo Re [aut] ,
Marcos R. Lima [aut] ,
Edivando Couto [aut] ,
Jose Hilario Delconte Ferreira [aut] ,
Valeria Batista [aut] ,
Dayani Bailly [aut]
Maintainer: Luiz Fernando Esser <luizesser@gmail.com>
Diff between caretSDM versions 1.8.3 dated 2026-05-12 and 1.9.7 dated 2026-07-16
caretSDM-1.8.3/caretSDM/R/checkmate.R |only caretSDM-1.9.7/caretSDM/DESCRIPTION | 28 caretSDM-1.9.7/caretSDM/MD5 | 251 +- caretSDM-1.9.7/caretSDM/NAMESPACE | 28 caretSDM-1.9.7/caretSDM/NEWS.md | 39 caretSDM-1.9.7/caretSDM/R/GBIF_data.R | 21 caretSDM-1.9.7/caretSDM/R/WorldClim_data.R | 109 - caretSDM-1.9.7/caretSDM/R/add_predictors.R | 41 caretSDM-1.9.7/caretSDM/R/add_scenarios.R | 321 ++- caretSDM-1.9.7/caretSDM/R/background.R | 45 caretSDM-1.9.7/caretSDM/R/buffer_sdm.R | 41 caretSDM-1.9.7/caretSDM/R/change_sdm.r | 58 caretSDM-1.9.7/caretSDM/R/correlate_sdm.r | 30 caretSDM-1.9.7/caretSDM/R/data_clean.R | 151 + caretSDM-1.9.7/caretSDM/R/ensemble_sdm.R | 207 +- caretSDM-1.9.7/caretSDM/R/find_columns.R | 4 caretSDM-1.9.7/caretSDM/R/gcms_ensembles.R | 48 caretSDM-1.9.7/caretSDM/R/input_sdm.R | 300 ++- caretSDM-1.9.7/caretSDM/R/is.R | 14 caretSDM-1.9.7/caretSDM/R/join_area.R | 25 caretSDM-1.9.7/caretSDM/R/maxent.R | 136 - caretSDM-1.9.7/caretSDM/R/multicollinearity_sdm.R | 31 caretSDM-1.9.7/caretSDM/R/names.R | 60 caretSDM-1.9.7/caretSDM/R/occurrences_sdm.R | 234 +- caretSDM-1.9.7/caretSDM/R/pca_predictors.R | 20 caretSDM-1.9.7/caretSDM/R/pdp_sdm.R | 129 - caretSDM-1.9.7/caretSDM/R/plot.R | 175 + caretSDM-1.9.7/caretSDM/R/predict_sdm.R | 106 - caretSDM-1.9.7/caretSDM/R/pseudoabsences.R | 71 caretSDM-1.9.7/caretSDM/R/sdm_area.R | 602 ++---- caretSDM-1.9.7/caretSDM/R/sdm_as.R | 30 caretSDM-1.9.7/caretSDM/R/sf_to_df_sdm.R | 18 caretSDM-1.9.7/caretSDM/R/stack_sdm.R |only caretSDM-1.9.7/caretSDM/R/summary_sdm.R | 155 - caretSDM-1.9.7/caretSDM/R/tidyverse.R | 45 caretSDM-1.9.7/caretSDM/R/train_sdm.R | 930 ++++------ caretSDM-1.9.7/caretSDM/R/tsne_sdm.R | 4 caretSDM-1.9.7/caretSDM/R/tuneGrid_sdm.r | 28 caretSDM-1.9.7/caretSDM/R/use_esm.R | 37 caretSDM-1.9.7/caretSDM/R/use_mem.R | 35 caretSDM-1.9.7/caretSDM/R/varImp_sdm.R | 22 caretSDM-1.9.7/caretSDM/R/vif_predictors.R | 8 caretSDM-1.9.7/caretSDM/R/write.R | 73 caretSDM-1.9.7/caretSDM/README.md | 20 caretSDM-1.9.7/caretSDM/man/GBIF_data.Rd | 4 caretSDM-1.9.7/caretSDM/man/WorldClim_data.Rd | 45 caretSDM-1.9.7/caretSDM/man/add_predictors.Rd | 2 caretSDM-1.9.7/caretSDM/man/add_scenarios.Rd | 21 caretSDM-1.9.7/caretSDM/man/algorithms.Rd | 10 caretSDM-1.9.7/caretSDM/man/bioc.Rd | 12 caretSDM-1.9.7/caretSDM/man/buffer_sdm.Rd | 6 caretSDM-1.9.7/caretSDM/man/caretSDM-package.Rd | 1 caretSDM-1.9.7/caretSDM/man/correlate_sdm.Rd | 26 caretSDM-1.9.7/caretSDM/man/data_clean.Rd | 4 caretSDM-1.9.7/caretSDM/man/dot-find_columns.Rd |only caretSDM-1.9.7/caretSDM/man/dot-sf_to_df_sdm.Rd |only caretSDM-1.9.7/caretSDM/man/ensemble_sdm.Rd | 64 caretSDM-1.9.7/caretSDM/man/gcms_ensembles.Rd | 29 caretSDM-1.9.7/caretSDM/man/input_sdm.Rd | 20 caretSDM-1.9.7/caretSDM/man/is_input_sdm.Rd | 2 caretSDM-1.9.7/caretSDM/man/join_area.Rd | 4 caretSDM-1.9.7/caretSDM/man/multicollinearity_sdm.Rd | 6 caretSDM-1.9.7/caretSDM/man/occ.Rd | 12 caretSDM-1.9.7/caretSDM/man/occurrences_sdm.Rd | 15 caretSDM-1.9.7/caretSDM/man/parana.Rd | 16 caretSDM-1.9.7/caretSDM/man/pca_predictors.Rd | 6 caretSDM-1.9.7/caretSDM/man/pdp_sdm.Rd | 24 caretSDM-1.9.7/caretSDM/man/plot_occurrences.Rd | 6 caretSDM-1.9.7/caretSDM/man/predict_sdm.Rd | 26 caretSDM-1.9.7/caretSDM/man/prediction_change_sdm.Rd | 29 caretSDM-1.9.7/caretSDM/man/predictor_names.Rd | 2 caretSDM-1.9.7/caretSDM/man/pseudoabsences.Rd | 14 caretSDM-1.9.7/caretSDM/man/rivs.Rd | 14 caretSDM-1.9.7/caretSDM/man/salm.Rd | 12 caretSDM-1.9.7/caretSDM/man/scen.Rd | 20 caretSDM-1.9.7/caretSDM/man/scen_rs.Rd | 22 caretSDM-1.9.7/caretSDM/man/sdm_area.Rd | 21 caretSDM-1.9.7/caretSDM/man/sdm_as_stars.Rd | 20 caretSDM-1.9.7/caretSDM/man/stack_sdm.Rd |only caretSDM-1.9.7/caretSDM/man/summary_sdm.Rd | 6 caretSDM-1.9.7/caretSDM/man/tidyverse-methods.Rd | 2 caretSDM-1.9.7/caretSDM/man/train_sdm.Rd | 28 caretSDM-1.9.7/caretSDM/man/tuneGrid_sdm.Rd | 24 caretSDM-1.9.7/caretSDM/man/use_esm.Rd | 8 caretSDM-1.9.7/caretSDM/man/use_mem.Rd | 8 caretSDM-1.9.7/caretSDM/man/varImp_sdm.Rd | 22 caretSDM-1.9.7/caretSDM/man/vif_predictors.Rd | 4 caretSDM-1.9.7/caretSDM/tests/testthat/Rplots.pdf |binary caretSDM-1.9.7/caretSDM/tests/testthat/_snaps/essentials.md |only caretSDM-1.9.7/caretSDM/tests/testthat/_snaps/gcms_ensembles.md | 88 caretSDM-1.9.7/caretSDM/tests/testthat/_snaps/input_sdm.md | 41 caretSDM-1.9.7/caretSDM/tests/testthat/_snaps/multicollinearity_sdm.md | 36 caretSDM-1.9.7/caretSDM/tests/testthat/_snaps/occurrences_sdm.md | 18 caretSDM-1.9.7/caretSDM/tests/testthat/_snaps/predict_sdm.md | 752 +++----- caretSDM-1.9.7/caretSDM/tests/testthat/_snaps/sdm_area.md | 78 caretSDM-1.9.7/caretSDM/tests/testthat/_snaps/vif_predictors.md | 28 caretSDM-1.9.7/caretSDM/tests/testthat/test-GBIF_data.R | 15 caretSDM-1.9.7/caretSDM/tests/testthat/test-WorldClim_data.R | 17 caretSDM-1.9.7/caretSDM/tests/testthat/test-add_predictors.R | 108 - caretSDM-1.9.7/caretSDM/tests/testthat/test-add_scenarios.R | 147 - caretSDM-1.9.7/caretSDM/tests/testthat/test-background.R | 28 caretSDM-1.9.7/caretSDM/tests/testthat/test-buffer_sdm.R | 42 caretSDM-1.9.7/caretSDM/tests/testthat/test-change_sdm.R | 61 caretSDM-1.9.7/caretSDM/tests/testthat/test-correlate_sdm.R | 28 caretSDM-1.9.7/caretSDM/tests/testthat/test-data_clean.R | 50 caretSDM-1.9.7/caretSDM/tests/testthat/test-ensemble_sdm.R | 63 caretSDM-1.9.7/caretSDM/tests/testthat/test-essentials.R | 168 + caretSDM-1.9.7/caretSDM/tests/testthat/test-gcms_ensembles.R | 43 caretSDM-1.9.7/caretSDM/tests/testthat/test-input_sdm.R | 8 caretSDM-1.9.7/caretSDM/tests/testthat/test-join_area.R | 12 caretSDM-1.9.7/caretSDM/tests/testthat/test-multicollinearity_sdm.R | 91 caretSDM-1.9.7/caretSDM/tests/testthat/test-names.R | 12 caretSDM-1.9.7/caretSDM/tests/testthat/test-occurrences_sdm.R | 223 +- caretSDM-1.9.7/caretSDM/tests/testthat/test-pca_predictors.R | 36 caretSDM-1.9.7/caretSDM/tests/testthat/test-pdp_sdm.R | 25 caretSDM-1.9.7/caretSDM/tests/testthat/test-plot.R | 16 caretSDM-1.9.7/caretSDM/tests/testthat/test-predict_sdm.R | 241 +- caretSDM-1.9.7/caretSDM/tests/testthat/test-pseudoabsences.R | 23 caretSDM-1.9.7/caretSDM/tests/testthat/test-sdm_area.R | 84 caretSDM-1.9.7/caretSDM/tests/testthat/test-sdm_as.R | 38 caretSDM-1.9.7/caretSDM/tests/testthat/test-tidyverse.R | 60 caretSDM-1.9.7/caretSDM/tests/testthat/test-train_sdm.R | 633 ++++-- caretSDM-1.9.7/caretSDM/tests/testthat/test-tsne_sdm.R | 4 caretSDM-1.9.7/caretSDM/tests/testthat/test-tuneGrid_sdm.R | 28 caretSDM-1.9.7/caretSDM/tests/testthat/test-use_esm.R | 2 caretSDM-1.9.7/caretSDM/tests/testthat/test-use_mem.R | 22 caretSDM-1.9.7/caretSDM/tests/testthat/test-varImp_sdm.R | 12 caretSDM-1.9.7/caretSDM/tests/testthat/test-vif_predictors.R | 30 caretSDM-1.9.7/caretSDM/tests/testthat/test-write.R | 36 caretSDM-1.9.7/caretSDM/tests/testthat/teste |only 130 files changed, 4718 insertions(+), 4076 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-06-25 0.3.0
Title: Compute Sun Position, Sunlight Phases, Moon Position and Lunar
Phase
Description: Get sun position, sunlight phases (times for sunrise, sunset, dusk, etc.),
moon position and lunar phase for the given location and time. Most calculations are based on the
formulas given in Astronomy Answers articles about position of the sun and the planets :
<https://www.aa.quae.nl/en/reken/zonpositie.html>.
Author: Benoit Thieurmel [aut, cre] ,
Achraf Elmarhraoui [aut]
Maintainer: Benoit Thieurmel <bthieurmel@gmail.com>
Diff between suncalc versions 0.5.1 dated 2022-09-29 and 0.5.3 dated 2026-07-16
DESCRIPTION | 8 +- MD5 | 28 ++++---- NEWS.md | 9 ++ R/calcFunctions.R | 120 +++++++++-------------------------- R/getMoonIllumination.R | 36 +++++----- R/getMoonPosition.R | 23 +++--- R/getMoonTimes.R | 124 ++++++++++++++++++++++++++++++------ R/getSunlightPosition.R | 19 ++--- R/getSunlightTimes.R | 151 +++++++++++++++++++++++++++++++++------------ R/utils.R | 2 man/getMoonIllumination.Rd | 41 ++++++------ man/getMoonPosition.Rd | 28 ++++---- man/getMoonTimes.Rd | 34 +++++----- man/getSunlightPosition.Rd | 24 ++++--- man/getSunlightTimes.Rd | 50 ++++++++------ 15 files changed, 414 insertions(+), 283 deletions(-)
Title: Temporal Disaggregation and Benchmarking in 'JDemetra+' 3.x
Description: Interface to 'JDemetra+' 3.x (<https://github.com/jdemetra>)
time series analysis software. It provides a variety of methods for
temporal disaggregation & interpolation, benchmarking, reconciliation
and calendarization. It incorporates statistical methods described in
the latest European Statistical System (ESS) guidelines on temporal
disaggregation, benchmarking, and reconciliation (2018 edition). The package
implements highly efficient algorithms for fast and reliable computation.
Author: Jean Palate [aut],
Corentin Lemasson [aut, cre],
Tanguy Barthelemy [ctb, art],
Nikolina Rizanovska [ctb]
Maintainer: Corentin Lemasson <corentin.lemasson@nbb.be>
Diff between rjd3bench versions 3.1.2 dated 2026-05-04 and 3.1.3 dated 2026-07-16
rjd3bench-3.1.2/rjd3bench/inst/java/jdplus-benchmarking-base-api-2.1.0.jar |only rjd3bench-3.1.2/rjd3bench/inst/java/jdplus-benchmarking-base-core-2.1.0.jar |only rjd3bench-3.1.2/rjd3bench/inst/java/jdplus-benchmarking-base-r-2.1.0.jar |only rjd3bench-3.1.3/rjd3bench/DESCRIPTION | 10 rjd3bench-3.1.3/rjd3bench/MD5 | 62 ++-- rjd3bench-3.1.3/rjd3bench/NAMESPACE | 3 rjd3bench-3.1.3/rjd3bench/NEWS.md | 30 ++ rjd3bench-3.1.3/rjd3bench/R/adl.R | 2 rjd3bench-3.1.3/rjd3bench/R/benchmark.R | 14 - rjd3bench-3.1.3/rjd3bench/R/calendarization.R | 2 rjd3bench-3.1.3/rjd3bench/R/mbdenton.R | 2 rjd3bench-3.1.3/rjd3bench/R/tempdisagg.R | 14 - rjd3bench-3.1.3/rjd3bench/R/zzz.R | 44 ++- rjd3bench-3.1.3/rjd3bench/README.md | 2 rjd3bench-3.1.3/rjd3bench/inst/doc/rjd3bench.R | 1 rjd3bench-3.1.3/rjd3bench/inst/doc/rjd3bench.Rmd | 3 rjd3bench-3.1.3/rjd3bench/inst/doc/rjd3bench.html | 129 ++++------ rjd3bench-3.1.3/rjd3bench/inst/java/jdplus-benchmarking-base-api-2.2.0.jar |only rjd3bench-3.1.3/rjd3bench/inst/java/jdplus-benchmarking-base-core-2.2.0.jar |only rjd3bench-3.1.3/rjd3bench/inst/java/jdplus-benchmarking-base-r-2.2.0.jar |only rjd3bench-3.1.3/rjd3bench/man/adl_disaggregation.Rd | 2 rjd3bench-3.1.3/rjd3bench/man/calendarization.Rd | 2 rjd3bench-3.1.3/rjd3bench/man/cholette.Rd | 2 rjd3bench-3.1.3/rjd3bench/man/cubicspline.Rd | 2 rjd3bench-3.1.3/rjd3bench/man/denton.Rd | 2 rjd3bench-3.1.3/rjd3bench/man/denton_modelbased.Rd | 2 rjd3bench-3.1.3/rjd3bench/man/denton_raw.Rd | 2 rjd3bench-3.1.3/rjd3bench/man/grp.Rd | 2 rjd3bench-3.1.3/rjd3bench/man/multivariatecholette.Rd | 4 rjd3bench-3.1.3/rjd3bench/man/temporal_disaggregation.Rd | 2 rjd3bench-3.1.3/rjd3bench/man/temporal_disaggregation_raw.Rd | 2 rjd3bench-3.1.3/rjd3bench/man/temporal_interpolation.Rd | 2 rjd3bench-3.1.3/rjd3bench/man/temporal_interpolation_raw.Rd | 4 rjd3bench-3.1.3/rjd3bench/man/temporaldisaggregationI.Rd | 2 rjd3bench-3.1.3/rjd3bench/vignettes/rjd3bench.Rmd | 3 35 files changed, 193 insertions(+), 160 deletions(-)
Title: Temporal Encoder-Masked Probabilistic Ensemble Regressor
Description: Implements a probabilistic ensemble time-series forecaster that combines an auto-encoder with a neural decision forest whose split variables are learned through a differentiable feature-mask layer. Functions are written with 'torch' tensors and provide CRPS (Continuous Ranked Probability Scores) training plus mixture-distribution post-processing.
Author: Giancarlo Vercellino [aut, cre, cph]
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
This is a re-admission after prior archival of version 1.1.0 dated 2025-08-18
Diff between temper versions 1.1.0 dated 2025-08-18 and 1.1.1 dated 2026-07-16
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/main.R | 12 +++++++++++- man/temper.Rd | 11 ++++++++++- tests/testthat/test-main.R | 27 ++++++++++++++++++++------- 6 files changed, 53 insertions(+), 17 deletions(-)
Title: Powerful 'SAS' Inspired Concepts for more Efficient Bigger
Outputs
Description: The main goal is to make descriptive evaluations easier to create bigger and more complex outputs in less time with less code. Introducing format containers with multilabels <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/p06ciqes4eaqo6n0zyqtz9p21nfb.htm>, a more powerful summarise which is capable to output every possible combination of the provided grouping variables in one go <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/p0jvbbqkt0gs2cn1lo4zndbqs1pe.htm>, tabulation functions which can create any table in different styles <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/n1ql5xnu0k3kdtn11gwa5hc7u435.htm> and other more readable functions. The code is optimized to work fast even with datasets of over a million observations.
Author: Tim Siebenmorgen [aut, cre, cph]
Maintainer: Tim Siebenmorgen <qol_package@proton.me>
Diff between qol versions 1.3.2 dated 2026-06-16 and 1.3.3 dated 2026-07-16
qol-1.3.2/qol/man/set.Rd |only qol-1.3.3/qol/DESCRIPTION | 8 qol-1.3.3/qol/MD5 | 103 qol-1.3.3/qol/NAMESPACE | 3 qol-1.3.3/qol/NEWS.md | 56 qol-1.3.3/qol/R/any_table.R | 6678 +++++++++---------- qol-1.3.3/qol/R/build_master.R | 3 qol-1.3.3/qol/R/build_rstheme.R | 3 qol-1.3.3/qol/R/compute.R | 1127 +-- qol-1.3.3/qol/R/create_format.R | 2 qol-1.3.3/qol/R/crosstabs.R | 2771 +++---- qol-1.3.3/qol/R/dummy_data.R | 782 +- qol-1.3.3/qol/R/excel_helpers.R | 4176 +++++------ qol-1.3.3/qol/R/export_with_style.R | 997 +- qol-1.3.3/qol/R/frequencies.R | 3463 ++++----- qol-1.3.3/qol/R/if_else.R | 608 + qol-1.3.3/qol/R/import_export.R | 1213 +-- qol-1.3.3/qol/R/internal.R | 16 qol-1.3.3/qol/R/loading.R | 56 qol-1.3.3/qol/R/messages.R | 3453 +++++---- qol-1.3.3/qol/R/multi_join.R | 100 qol-1.3.3/qol/R/options.R | 2054 ++--- qol-1.3.3/qol/R/qol.R | 268 qol-1.3.3/qol/R/retain.R | 1043 +- qol-1.3.3/qol/R/small_helpers.R | 2 qol-1.3.3/qol/R/statistics.R | 1326 +-- qol-1.3.3/qol/R/summarise_plus.R | 2899 ++++---- qol-1.3.3/qol/README.md | 56 qol-1.3.3/qol/inst/tinytest/test-any_table.R | 1926 ++--- qol-1.3.3/qol/inst/tinytest/test-compute.R | 278 qol-1.3.3/qol/inst/tinytest/test-create_format.R | 20 qol-1.3.3/qol/inst/tinytest/test-export_with_style.R | 206 qol-1.3.3/qol/inst/tinytest/test-frequencies.R | 16 qol-1.3.3/qol/inst/tinytest/test-if_else.R | 194 qol-1.3.3/qol/inst/tinytest/test-loading.R | 21 qol-1.3.3/qol/inst/tinytest/test-multi_join.R | 40 qol-1.3.3/qol/inst/tinytest/test-options.R | 524 - qol-1.3.3/qol/inst/tinytest/test-retain.R | 480 - qol-1.3.3/qol/inst/tinytest/test-summarise_plus.R | 2031 ++--- qol-1.3.3/qol/man/any_table.Rd | 53 qol-1.3.3/qol/man/compute..Rd | 10 qol-1.3.3/qol/man/excel_output_style.Rd | 2 qol-1.3.3/qol/man/export_with_style.Rd | 4 qol-1.3.3/qol/man/if_else.Rd | 2 qol-1.3.3/qol/man/ifelse_multi.Rd |only qol-1.3.3/qol/man/import_export.Rd | 2 qol-1.3.3/qol/man/modify_number_formats.Rd | 110 qol-1.3.3/qol/man/modify_output_style.Rd | 106 qol-1.3.3/qol/man/number_format_style.Rd | 296 qol-1.3.3/qol/man/qol-package.Rd | 4 qol-1.3.3/qol/man/retain.Rd | 1 qol-1.3.3/qol/man/stack_data.Rd |only qol-1.3.3/qol/man/summarise_plus.Rd | 29 qol-1.3.3/qol/man/where..Rd | 2 54 files changed, 20602 insertions(+), 19021 deletions(-)
Title: An Interface to 'nVenn2'
Description: Creates quasi-proportional Venn diagrams with an arbitrary number of sets.
It is related to the old 'nVennR' package, but the algorithm and use have been reworked.
Author: Victor Quesada [aut, cre, cph]
Maintainer: Victor Quesada <quesadavictor@uniovi.es>
Diff between nVennR2 versions 2.0.3 dated 2026-07-13 and 2.0.4 dated 2026-07-16
DESCRIPTION | 8 MD5 | 12 NEWS.md | 10 inst/doc/nVennR2.html | 3357 +++++++++++++++++++++---------------------- src/scene.h | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test-nVenn2.R | 18 7 files changed, 1686 insertions(+), 1720 deletions(-)
Title: An Introduction to Applied Multivariate Analysis with R
Description: Functions, data sets, analyses and examples from the book
`An Introduction to Applied Multivariate Analysis with R'
(Brian S. Everitt and Torsten Hothorn, Springer, 2011).
Author: Brian S. Everitt [aut],
Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between MVA versions 1.0-9 dated 2025-01-29 and 1.0-10 dated 2026-07-16
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ build/vignette.rds |binary demo/Ch-CA.R | 10 ++++------ demo/Ch-EFA.R | 2 -- demo/Ch-LME.R | 2 -- demo/Ch-MDS.R | 2 -- demo/Ch-MVA.R | 14 ++++++-------- demo/Ch-PCA.R | 2 -- demo/Ch-SEM.R | 2 -- demo/Ch-Viz.R | 4 +--- inst/doc/Ch-Errata.R | 2 -- inst/doc/Ch-Errata.pdf |binary 13 files changed, 28 insertions(+), 46 deletions(-)
Title: Sampling Methods and Distribution Functions for the Ising Model
Description: Sample states from the Ising model and compute the probability of
states. Sampling can be done for any number of nodes, but due to the
intractability of the Ising model the distribution can only be computed up
to roughly 10 nodes. The Blume-Capel model, an Ising model with an
additional on-site quadratic (crystal-field) term, is also supported.
Author: Sacha Epskamp [aut, cre],
Jesse Boot [ctb],
Adela Maria Isvoranu [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between IsingSampler versions 0.2.4 dated 2025-05-13 and 0.5.0 dated 2026-07-16
IsingSampler-0.2.4/IsingSampler/R/Entrophy.R |only IsingSampler-0.2.4/IsingSampler/man/IsingEntrophy.Rd |only IsingSampler-0.2.4/IsingSampler/src/Makevars |only IsingSampler-0.2.4/IsingSampler/src/Makevars.win |only IsingSampler-0.5.0/IsingSampler/DESCRIPTION | 22 IsingSampler-0.5.0/IsingSampler/MD5 | 59 - IsingSampler-0.5.0/IsingSampler/NAMESPACE | 41 IsingSampler-0.5.0/IsingSampler/NEWS | 56 - IsingSampler-0.5.0/IsingSampler/R/BlumeCapel.R |only IsingSampler-0.5.0/IsingSampler/R/Distribution.R | 134 +- IsingSampler-0.5.0/IsingSampler/R/Entropy.R |only IsingSampler-0.5.0/IsingSampler/R/EstimateIsing.R | 46 IsingSampler-0.5.0/IsingSampler/R/IsingSampler.R | 260 +++- IsingSampler-0.5.0/IsingSampler/R/LinTransform.R | 66 - IsingSampler-0.5.0/IsingSampler/R/PseudoLikelihood.R | 146 +- IsingSampler-0.5.0/IsingSampler/R/RcppExports.R | 70 - IsingSampler-0.5.0/IsingSampler/R/logisticRegressionEstimation.R | 512 ++++----- IsingSampler-0.5.0/IsingSampler/man/BlumeCapelSampler.Rd |only IsingSampler-0.5.0/IsingSampler/man/EstimateIsing.Rd | 224 ++-- IsingSampler-0.5.0/IsingSampler/man/IsingEntropy.Rd |only IsingSampler-0.5.0/IsingSampler/man/IsingLikelihood.Rd | 73 - IsingSampler-0.5.0/IsingSampler/man/IsingPL.Rd | 74 - IsingSampler-0.5.0/IsingSampler/man/IsingSampler-package.Rd | 148 +- IsingSampler-0.5.0/IsingSampler/man/IsingSampler.Rd | 151 +- IsingSampler-0.5.0/IsingSampler/man/IsingStateProb.Rd | 71 - IsingSampler-0.5.0/IsingSampler/man/IsingSumLikelihood.Rd | 65 - IsingSampler-0.5.0/IsingSampler/man/LinTransform.Rd | 132 +- IsingSampler-0.5.0/IsingSampler/man/NodeInformation.Rd |only IsingSampler-0.5.0/IsingSampler/src/IsingCpp_CFTP.cpp | 540 +++------- IsingSampler-0.5.0/IsingSampler/src/PseudoLikelihood.cpp | 13 IsingSampler-0.5.0/IsingSampler/src/RcppExports.cpp | 104 - IsingSampler-0.5.0/IsingSampler/tests |only 32 files changed, 1517 insertions(+), 1490 deletions(-)
Title: Geometrically Designed Spline Regression
Description: Spline regression, generalized additive models and
component-wise gradient boosting utilizing geometrically designed
(GeD) splines. GeDS regression is a non-parametric method inspired by
geometric principles, for fitting spline regression models with
variable knots in one or two independent variables. It efficiently
estimates the number of knots and their positions, as well as the
spline order, assuming the response variable follows a distribution
from the exponential family. GeDS models integrate the broader
category of generalized (non-)linear models, offering a flexible
approach to model complex relationships. A description of the
method can be found in Kaishev et al. (2016)
<doi:10.1007/s00180-015-0621-7> and Dimitrova et al. (2023)
<doi:10.1016/j.amc.2022.127493>. Further extending its capabilities,
GeDS's implementation includes generalized additive models (GAM) and
functional gradient boosting (FGB), enabling versatile multivariate
predictor modeling, as discussed in [...truncated...]
Author: Dimitrina S. Dimitrova [aut],
Vladimir K. Kaishev [aut],
Andrea Lattuada [aut],
Emilio L. Saenz Guillen [aut, cre],
Richard J. Verrall [aut]
Maintainer: Emilio L. Saenz Guillen
<emilioluissaenzguillen@gmail.com>
Diff between GeDS versions 0.3.3 dated 2025-06-30 and 0.3.4 dated 2026-07-16
DESCRIPTION | 25 MD5 | 170 +- NAMESPACE | 265 ++-- R/BivariateFitter.R | 313 ++-- R/GGeDS.R | 84 - R/GeDS-package.R | 12 R/IRLSfit.R | 8 R/IntegrateDerive.R | 52 R/NGeDS.R | 82 - R/NGeDSboost.R | 543 +++++--- R/NGeDSgam.R | 289 ++-- R/RcppExports.R | 8 R/S3methods.R | 659 ++++++++-- R/S3methods_GeDSboost-GeDSgam.R | 1867 ++++++++++++++++++----------- R/SplineReg.R | 130 +- R/SplineReg_Multivar.R | 722 +++++++---- R/SplineReg_biv.R | 130 +- R/UnivariateFitter.R | 441 +++--- R/cpp_functions_R.R | 147 +- R/cv_GeDSMethod.R | 226 ++- R/dynlib.R | 30 R/helpers.R | 387 ++++-- R/helpers_NGeDSboost-NGeDSgam.R | 244 ++- R/lines_GeDSMethod.R | 32 R/plot_GeDSMethod.R | 522 ++++---- R/pprep.R | 10 R/predict_helpers.R |only R/read.formula.R | 76 - R/tensorProd_R.R | 12 README.md | 4 build/vignette.rds |binary inst/CITATION | 27 inst/doc/jss_article.pdf |binary inst/doc/jss_article.pdf.asis | 10 inst/doc/rpubs_GeDS.R |only inst/doc/rpubs_GeDS.Rmd |only inst/doc/rpubs_GeDS.html |only inst/doc/rpubs_GeDSboost.R |only inst/doc/rpubs_GeDSboost.Rmd |only inst/doc/rpubs_GeDSboost.html |only inst/doc/rpubs_GeDSgam.R |only inst/doc/rpubs_GeDSgam.Rmd |only inst/doc/rpubs_GeDSgam.html |only inst/extdata |only man/BaFe2As2.Rd | 106 - man/BivariateFitters.Rd | 4 man/CrystalData.Rd | 14 man/Derive.Rd | 132 +- man/EWmortality.Rd | 36 man/GGeDS.Rd | 750 +++++------ man/GeDS-package.Rd | 244 +-- man/IRLSfit.Rd | 2 man/Integrate.Rd | 170 +- man/N.boost.iter.Rd | 2 man/NGeDS.Rd | 624 ++++----- man/NGeDSboost.Rd | 27 man/NGeDSgam.Rd | 12 man/PPolyRep.Rd | 180 +- man/SplineReg.Rd | 399 +++--- man/UnivariateFitters.Rd | 6 man/bl_imp.Rd | 2 man/coalMining.Rd | 66 - man/coef.GeDSgam_GeDSboost.Rd | 2 man/coef.Rd | 168 +- man/confint.GeDS.Rd | 2 man/crossv_GeDS.Rd | 30 man/deviance.GeDS.Rd | 96 - man/f.Rd | 144 +- man/family.GeDS.Rd | 4 man/formula.GeDS.Rd | 144 +- man/knots.Rd | 110 - man/logLik.GeDS.Rd | 2 man/plot.GeDS.Rd | 8 man/plot.GeDSboost.Rd | 9 man/plot.GeDSgam.Rd | 11 man/predict.GeDS.Rd | 126 - man/predict.GeDSgam_GeDSboost.Rd | 4 man/print.GeDS.Rd | 100 - man/shapeConstrain.GeDS.Rd |only man/shapeConstrain.GeDSboost.Rd |only man/shapeConstrain.GeDSgam.Rd |only man/shapeConstrain.Rd |only man/visualize_boosting.Rd | 2 src/GeDS1.cpp | 84 + src/RcppExports.cpp | 23 tests/testthat.R | 24 tests/testthat/test-crossv-geds.R |only tests/testthat/test-edge-cases.R |only tests/testthat/test-example-8-3-workflow.R |only tests/testthat/test-linear-separation.R |only tests/testthat/test-predictions.R | 324 ++--- tests/testthat/test-reference-values.R |only tests/testthat/test-shape-constrain.R |only vignettes/apa.csl |only vignettes/citations.bib |only vignettes/jss_article.pdf.asis | 10 vignettes/rpubs_GeDS.Rmd |only vignettes/rpubs_GeDSboost.Rmd |only vignettes/rpubs_GeDSgam.Rmd |only 99 files changed, 6911 insertions(+), 4819 deletions(-)
Title: Competence-Based Knowledge Space Theory
Description: Competence-based knowledge space theory (CbKST) is
an extension of knowledge space theory (KST) modeling the latent
skills and competencies underlying the observable response
behaviour as described by Heller & Stefanutti (2024)
<doi:10.1142/9789811280481_0001>. The package focuses on the mappings
between competence and performance level (skill (multi) map,
problem function etc.).
Author: Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between CbKST versions 0.1-0 dated 2026-06-30 and 0.1-1 dated 2026-07-16
DESCRIPTION | 12 +++---- MD5 | 24 ++++++++------ NAMESPACE | 2 + R/cbkst_competencestructure.R | 2 - R/cbkst_perf2comp.R | 15 --------- R/cbkst_problemfunction.R |only build/vignette.rds |binary inst/doc/CbKST.R | 1 inst/doc/CbKST.Rmd | 10 +++--- inst/doc/CbKST.html | 61 +++++++++++++++++++++++++++++--------- man/cbkst_competencestructure.Rd | 3 + man/cbkst_performancestructure.Rd | 3 + man/cbkst_problemfunction.Rd |only vignettes/CbKST.Rmd | 10 +++--- 14 files changed, 87 insertions(+), 56 deletions(-)
Title: 'Rcpp' Integration for the 'mlpack' Library
Description: A fast, flexible machine learning library, written in C++, that
aims to provide fast, extensible implementations of cutting-edge
machine learning algorithms. See also Curtin et al. (2023)
<doi:10.21105/joss.05026>.
Author: Yashwant Singh Parihar [aut, ctb, cph],
Ryan Curtin [aut, ctb, cph, cre],
Dirk Eddelbuettel [aut, ctb, cph],
James Balamuta [aut, ctb, cph],
Bill March [ctb, cph],
Dongryeol Lee [ctb, cph],
Nishant Mehta [ctb, cph],
Parikshit Ram [ctb, cph],
James Cl [...truncated...]
Maintainer: Ryan Curtin <ryan@ratml.org>
Diff between mlpack versions 4.7.0 dated 2026-02-07 and 4.8.0 dated 2026-07-16
mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/detect_file_type.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/detect_file_type_impl.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/save_dense.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/save_sparse.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/not_adapted/transposed_convolution.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/not_adapted/transposed_convolution_impl.hpp |only mlpack-4.8.0/mlpack/DESCRIPTION | 20 mlpack-4.8.0/mlpack/MD5 | 441 ++++++---- mlpack-4.8.0/mlpack/NAMESPACE | 25 mlpack-4.8.0/mlpack/R/RcppExports.R | 72 + mlpack-4.8.0/mlpack/R/adaboost.R | 54 - mlpack-4.8.0/mlpack/R/adaboost_classify.R |only mlpack-4.8.0/mlpack/R/adaboost_probabilities.R |only mlpack-4.8.0/mlpack/R/adaboost_train.R |only mlpack-4.8.0/mlpack/R/approx_kfn.R | 84 - mlpack-4.8.0/mlpack/R/bayesian_linear_regression.R | 70 - mlpack-4.8.0/mlpack/R/bayesian_linear_regression_predict.R |only mlpack-4.8.0/mlpack/R/bayesian_linear_regression_train.R |only mlpack-4.8.0/mlpack/R/cf.R | 108 -- mlpack-4.8.0/mlpack/R/dbscan.R | 62 - mlpack-4.8.0/mlpack/R/decision_tree.R | 70 - mlpack-4.8.0/mlpack/R/decision_tree_classify.R |only mlpack-4.8.0/mlpack/R/decision_tree_probabilities.R |only mlpack-4.8.0/mlpack/R/decision_tree_train.R |only mlpack-4.8.0/mlpack/R/det.R | 42 mlpack-4.8.0/mlpack/R/emst.R | 36 mlpack-4.8.0/mlpack/R/fastmks.R | 80 - mlpack-4.8.0/mlpack/R/generics.R |only mlpack-4.8.0/mlpack/R/gmm_generate.R | 28 mlpack-4.8.0/mlpack/R/gmm_probability.R | 20 mlpack-4.8.0/mlpack/R/gmm_train.R | 99 -- mlpack-4.8.0/mlpack/R/hmm_generate.R | 36 mlpack-4.8.0/mlpack/R/hmm_loglik.R | 19 mlpack-4.8.0/mlpack/R/hmm_train.R | 55 - mlpack-4.8.0/mlpack/R/hmm_viterbi.R | 20 mlpack-4.8.0/mlpack/R/hoeffding_tree.R | 96 -- mlpack-4.8.0/mlpack/R/image_converter.R | 64 - mlpack-4.8.0/mlpack/R/kde.R | 108 -- mlpack-4.8.0/mlpack/R/kernel_pca.R | 84 - mlpack-4.8.0/mlpack/R/kfn.R | 78 - mlpack-4.8.0/mlpack/R/kmeans.R | 100 -- mlpack-4.8.0/mlpack/R/knn.R | 84 - mlpack-4.8.0/mlpack/R/krann.R | 98 -- mlpack-4.8.0/mlpack/R/lars.R | 66 - mlpack-4.8.0/mlpack/R/lars_predict.R |only mlpack-4.8.0/mlpack/R/lars_train.R |only mlpack-4.8.0/mlpack/R/linear_regression.R | 44 mlpack-4.8.0/mlpack/R/linear_regression_predict.R |only mlpack-4.8.0/mlpack/R/linear_regression_train.R |only mlpack-4.8.0/mlpack/R/linear_svm.R | 108 -- mlpack-4.8.0/mlpack/R/lmnn.R | 124 +- mlpack-4.8.0/mlpack/R/local_coordinate_coding.R | 76 - mlpack-4.8.0/mlpack/R/logistic_regression.R | 88 - mlpack-4.8.0/mlpack/R/logistic_regression_classify.R |only mlpack-4.8.0/mlpack/R/logistic_regression_probabilities.R |only mlpack-4.8.0/mlpack/R/logistic_regression_train.R |only mlpack-4.8.0/mlpack/R/lsh.R | 76 - mlpack-4.8.0/mlpack/R/mean_shift.R | 58 - mlpack-4.8.0/mlpack/R/nbc.R | 42 mlpack-4.8.0/mlpack/R/nca.R | 95 -- mlpack-4.8.0/mlpack/R/nmf.R | 46 - mlpack-4.8.0/mlpack/R/pca.R | 52 - mlpack-4.8.0/mlpack/R/perceptron.R | 44 mlpack-4.8.0/mlpack/R/preprocess_binarize.R | 47 - mlpack-4.8.0/mlpack/R/preprocess_describe.R | 66 - mlpack-4.8.0/mlpack/R/preprocess_one_hot_encoding.R | 23 mlpack-4.8.0/mlpack/R/preprocess_scale.R | 98 -- mlpack-4.8.0/mlpack/R/preprocess_split.R | 90 -- mlpack-4.8.0/mlpack/R/radical.R | 64 - mlpack-4.8.0/mlpack/R/random_forest.R | 94 -- mlpack-4.8.0/mlpack/R/random_forest_classify.R |only mlpack-4.8.0/mlpack/R/random_forest_probabilities.R |only mlpack-4.8.0/mlpack/R/random_forest_train.R |only mlpack-4.8.0/mlpack/R/serialization.R | 12 mlpack-4.8.0/mlpack/R/softmax_regression.R | 64 - mlpack-4.8.0/mlpack/R/sparse_coding.R | 86 - mlpack-4.8.0/mlpack/R/test_r_binding.R | 48 - mlpack-4.8.0/mlpack/inst/include/mlpack.h | 24 mlpack-4.8.0/mlpack/inst/include/mlpack/base.hpp | 15 mlpack-4.8.0/mlpack/inst/include/mlpack/bindings/util/validate_methods.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/bindings/util/validate_methods_impl.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/bindings/util/wrapper_utilities.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/bindings/util/wrapper_utilities_impl.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/config.hpp | 56 + mlpack-4.8.0/mlpack/inst/include/mlpack/core.hpp | 11 mlpack-4.8.0/mlpack/inst/include/mlpack/core/audio |only mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/audio_options.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/combine_options.hpp | 54 - mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/data.hpp | 3 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/data_options.hpp | 25 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/download_file.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/download_file_impl.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/handle_files.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/handle_files_impl.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/image_bounding_box_impl.hpp | 7 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/image_letterbox.hpp | 9 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/image_options.hpp | 31 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/image_resize_crop.hpp | 6 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/imputation_methods/mean_imputation.hpp | 179 ++-- mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/imputation_methods/median_imputation.hpp | 132 ++ mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/load.hpp | 4 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/load_arff.hpp | 7 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/load_arff_impl.hpp | 24 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/load_audio.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/load_categorical.hpp | 42 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/load_categorical_impl.hpp | 76 + mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/load_image.hpp | 4 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/load_impl.hpp | 136 +-- mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/load_sparse.hpp | 3 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/matrix_options.hpp | 4 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/save.hpp | 3 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/save_audio.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/save_image.hpp | 4 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/save_impl.hpp | 23 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/save_matrix.hpp | 56 + mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/save_numeric.hpp | 18 mlpack-4.8.0/mlpack/inst/include/mlpack/core/data/text_options.hpp | 15 mlpack-4.8.0/mlpack/inst/include/mlpack/core/httplib |only mlpack-4.8.0/mlpack/inst/include/mlpack/core/metrics/non_maximal_suppression_impl.hpp | 26 mlpack-4.8.0/mlpack/inst/include/mlpack/core/stb/bundled/stb_image_resize2.h | 112 +- mlpack-4.8.0/mlpack/inst/include/mlpack/core/stb/bundled/stb_image_write.h | 2 mlpack-4.8.0/mlpack/inst/include/mlpack/core/transforms |only mlpack-4.8.0/mlpack/inst/include/mlpack/core/tree/cover_tree/cover_tree.hpp | 40 mlpack-4.8.0/mlpack/inst/include/mlpack/core/tree/cover_tree/cover_tree_impl.hpp | 69 - mlpack-4.8.0/mlpack/inst/include/mlpack/core/util/io.hpp | 3 mlpack-4.8.0/mlpack/inst/include/mlpack/core/util/param.hpp | 42 mlpack-4.8.0/mlpack/inst/include/mlpack/core/util/params_impl.hpp | 6 mlpack-4.8.0/mlpack/inst/include/mlpack/core/util/version.hpp | 2 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/adaboost/adaboost_probabilities_main.cpp | 4 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/adaboost/adaboost_train_main.cpp | 4 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/dag_network_impl.hpp | 36 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/ffn_impl.hpp | 36 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/layer/convolution_impl.hpp | 14 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/layer/layer_types.hpp | 7 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/layer/serialization.hpp | 17 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/layer/transposed_convolution.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/layer/transposed_convolution_impl.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/models/models.hpp | 2 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/models/yolov3/yolov3.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/models/yolov3/yolov3_impl.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/models/yolov3/yolov3_layer.hpp | 2 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/models/yolov3/yolov3_layer_impl.hpp | 43 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/models/yolov3/yolov3_tiny.hpp | 217 +++- mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/models/yolov3/yolov3_tiny_impl.hpp | 126 ++ mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/rnn.hpp | 16 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/ann/rnn_impl.hpp | 36 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/bayesian_linear_regression/bayesian_linear_regression_main.cpp | 5 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/bayesian_linear_regression/blr_predict_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/bayesian_linear_regression/blr_train_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/decision_tree/decision_tree_classify_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/decision_tree/decision_tree_main.cpp | 24 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/decision_tree/decision_tree_model.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/decision_tree/decision_tree_probabilities_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/decision_tree/decision_tree_train_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/gmm/positive_definite_constraint.hpp | 2 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/lars/lars_predict_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/lars/lars_train_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/linear_regression/linear_regression.hpp | 1 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/linear_regression/linear_regression_impl.hpp | 2 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/linear_regression/linear_regression_predict_main.cpp | 6 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/linear_regression/linear_regression_train_main.cpp | 10 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/logistic_regression/logistic_regression_classify_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/logistic_regression/logistic_regression_probabilities_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/logistic_regression/logistic_regression_train_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/preprocess/preprocess_one_hot_encoding_main.cpp | 2 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/random_forest/random_forest_classify_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/random_forest/random_forest_main.cpp | 31 mlpack-4.8.0/mlpack/inst/include/mlpack/methods/random_forest/random_forest_model.hpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/random_forest/random_forest_probabilities_main.cpp |only mlpack-4.8.0/mlpack/inst/include/mlpack/methods/random_forest/random_forest_train_main.cpp |only mlpack-4.8.0/mlpack/man/adaboost.Rd | 28 mlpack-4.8.0/mlpack/man/adaboost_classify.Rd |only mlpack-4.8.0/mlpack/man/adaboost_probabilities.Rd |only mlpack-4.8.0/mlpack/man/adaboost_train.Rd |only mlpack-4.8.0/mlpack/man/approx_kfn.Rd | 46 - mlpack-4.8.0/mlpack/man/bayesian_linear_regression.Rd | 56 - mlpack-4.8.0/mlpack/man/bayesian_linear_regression_predict.Rd |only mlpack-4.8.0/mlpack/man/bayesian_linear_regression_train.Rd |only mlpack-4.8.0/mlpack/man/cf.Rd | 42 mlpack-4.8.0/mlpack/man/dbscan.Rd | 16 mlpack-4.8.0/mlpack/man/decision_tree.Rd | 32 mlpack-4.8.0/mlpack/man/decision_tree_classify.Rd |only mlpack-4.8.0/mlpack/man/decision_tree_probabilities.Rd |only mlpack-4.8.0/mlpack/man/decision_tree_train.Rd |only mlpack-4.8.0/mlpack/man/det.Rd | 8 mlpack-4.8.0/mlpack/man/emst.Rd | 13 mlpack-4.8.0/mlpack/man/fastmks.Rd | 28 mlpack-4.8.0/mlpack/man/gmm_generate.Rd | 11 mlpack-4.8.0/mlpack/man/gmm_probability.Rd | 9 mlpack-4.8.0/mlpack/man/gmm_train.Rd | 36 mlpack-4.8.0/mlpack/man/hmm_generate.Rd | 16 mlpack-4.8.0/mlpack/man/hmm_loglik.Rd | 8 mlpack-4.8.0/mlpack/man/hmm_train.Rd | 12 mlpack-4.8.0/mlpack/man/hmm_viterbi.Rd | 9 mlpack-4.8.0/mlpack/man/hoeffding_tree.Rd | 38 mlpack-4.8.0/mlpack/man/image_converter.Rd | 29 mlpack-4.8.0/mlpack/man/kde.Rd | 50 - mlpack-4.8.0/mlpack/man/kernel_pca.Rd | 21 mlpack-4.8.0/mlpack/man/kfn.Rd | 28 mlpack-4.8.0/mlpack/man/kmeans.Rd | 36 mlpack-4.8.0/mlpack/man/knn.Rd | 30 mlpack-4.8.0/mlpack/man/krann.Rd | 28 mlpack-4.8.0/mlpack/man/lars.Rd | 26 mlpack-4.8.0/mlpack/man/lars_predict.Rd |only mlpack-4.8.0/mlpack/man/lars_train.Rd |only mlpack-4.8.0/mlpack/man/linear_regression.Rd | 24 mlpack-4.8.0/mlpack/man/linear_regression_predict.Rd |only mlpack-4.8.0/mlpack/man/linear_regression_train.Rd |only mlpack-4.8.0/mlpack/man/linear_svm.Rd | 42 mlpack-4.8.0/mlpack/man/lmnn.Rd | 46 - mlpack-4.8.0/mlpack/man/local_coordinate_coding.Rd | 34 mlpack-4.8.0/mlpack/man/logistic_regression.Rd | 38 mlpack-4.8.0/mlpack/man/logistic_regression_classify.Rd |only mlpack-4.8.0/mlpack/man/logistic_regression_probabilities.Rd |only mlpack-4.8.0/mlpack/man/logistic_regression_train.Rd |only mlpack-4.8.0/mlpack/man/lsh.Rd | 30 mlpack-4.8.0/mlpack/man/mean_shift.Rd | 14 mlpack-4.8.0/mlpack/man/mlpack.Rd | 3 mlpack-4.8.0/mlpack/man/nbc.Rd | 22 mlpack-4.8.0/mlpack/man/nca.Rd | 24 mlpack-4.8.0/mlpack/man/nmf.Rd | 20 mlpack-4.8.0/mlpack/man/pca.Rd | 17 mlpack-4.8.0/mlpack/man/perceptron.Rd | 26 mlpack-4.8.0/mlpack/man/preprocess_binarize.Rd | 24 mlpack-4.8.0/mlpack/man/preprocess_describe.Rd | 24 mlpack-4.8.0/mlpack/man/preprocess_one_hot_encoding.Rd | 10 mlpack-4.8.0/mlpack/man/preprocess_scale.Rd | 62 - mlpack-4.8.0/mlpack/man/preprocess_split.Rd | 60 - mlpack-4.8.0/mlpack/man/radical.Rd | 20 mlpack-4.8.0/mlpack/man/random_forest.Rd | 56 - mlpack-4.8.0/mlpack/man/random_forest_classify.Rd |only mlpack-4.8.0/mlpack/man/random_forest_probabilities.Rd |only mlpack-4.8.0/mlpack/man/random_forest_train.Rd |only mlpack-4.8.0/mlpack/man/softmax_regression.Rd | 28 mlpack-4.8.0/mlpack/man/sparse_coding.Rd | 36 mlpack-4.8.0/mlpack/src/Makevars | 1 mlpack-4.8.0/mlpack/src/Makevars.win | 1 mlpack-4.8.0/mlpack/src/RcppExports.cpp | 216 ++++ mlpack-4.8.0/mlpack/src/adaboost_classify.cpp |only mlpack-4.8.0/mlpack/src/adaboost_probabilities.cpp |only mlpack-4.8.0/mlpack/src/adaboost_train.cpp |only mlpack-4.8.0/mlpack/src/bayesian_linear_regression_predict.cpp |only mlpack-4.8.0/mlpack/src/bayesian_linear_regression_train.cpp |only mlpack-4.8.0/mlpack/src/decision_tree_classify.cpp |only mlpack-4.8.0/mlpack/src/decision_tree_probabilities.cpp |only mlpack-4.8.0/mlpack/src/decision_tree_train.cpp |only mlpack-4.8.0/mlpack/src/lars_predict.cpp |only mlpack-4.8.0/mlpack/src/lars_train.cpp |only mlpack-4.8.0/mlpack/src/linear_regression_predict.cpp |only mlpack-4.8.0/mlpack/src/linear_regression_train.cpp |only mlpack-4.8.0/mlpack/src/logistic_regression_classify.cpp |only mlpack-4.8.0/mlpack/src/logistic_regression_probabilities.cpp |only mlpack-4.8.0/mlpack/src/logistic_regression_train.cpp |only mlpack-4.8.0/mlpack/src/mlpack/bindings/R/mlpack_main.hpp | 42 mlpack-4.8.0/mlpack/src/mlpack/bindings/R/print_doc_functions.hpp | 96 ++ mlpack-4.8.0/mlpack/src/mlpack/bindings/R/print_doc_functions_impl.hpp | 277 ++++++ mlpack-4.8.0/mlpack/src/mlpack/bindings/R/print_input_param.hpp | 22 mlpack-4.8.0/mlpack/src/mlpack/bindings/R/print_input_processing.hpp | 6 mlpack-4.8.0/mlpack/src/mlpack/bindings/R/tests/test_r_binding_main.cpp | 1 mlpack-4.8.0/mlpack/src/r_util.cpp | 1 mlpack-4.8.0/mlpack/src/random_forest_classify.cpp |only mlpack-4.8.0/mlpack/src/random_forest_probabilities.cpp |only mlpack-4.8.0/mlpack/src/random_forest_train.cpp |only mlpack-4.8.0/mlpack/src/rcpp_mlpack.h | 13 264 files changed, 4293 insertions(+), 3379 deletions(-)
Title: Simple Mediation and Moderation Analysis
Description: This toolbox allows you to do simple mediation and moderation
analysis. Models are estimated with the 'lavaan' package by Rosseel (2012)
<doi:10.18637/jss.v048.i02>; standard errors for the mediation estimates
are computed with the delta method following Sobel (1982)
<doi:10.2307/270723> or by bootstrapping. It is also available as a module
for 'jamovi' (see <https://www.jamovi.org> for more information). You can
find an in depth tutorial on the 'lavaan' model syntax used for this
package on <https://lavaan.ugent.be/tutorial/index.html>.
Author: Ravi Selker [aut, cre]
Maintainer: Ravi Selker <selker.ravi@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2017-09-12
Diff between medmod versions 1.0.0 dated 2017-09-12 and 1.2.0 dated 2026-07-16
DESCRIPTION | 33 ++-- MD5 | 35 ++-- NAMESPACE | 4 NEWS.md |only R/med.b.R | 343 ++++++++++++++++++++++++++++++--------------- R/med.h.R | 243 +++++++++++++++++++++---------- R/medmod.R | 22 +- R/mod.b.R | 332 +++++++++++++++++++++++++++++-------------- R/mod.h.R | 266 ++++++++++++++++++++++++---------- R/utils.R | 238 ++++++++++++++++++++++++++++++- man/center.Rd | 1 man/drawPathDiagram.Rd |only man/lavaanRow.Rd |only man/med.Rd | 87 ++++++++--- man/medmod-package.Rd | 20 +- man/mod.Rd | 92 ++++++++---- man/pathLabel.Rd |only man/shortenLabel.Rd |only man/sigStars.Rd |only tests/testthat/testmed.R | 76 ++++++++- tests/testthat/testmod.R | 103 +++++++++++-- tests/testthat/testutils.R |only 22 files changed, 1383 insertions(+), 512 deletions(-)
Title: Analytic Hierarchy Process for Survey Data
Description: The Analytic Hierarchy Process is a versatile multi-criteria decision-making tool introduced by Saaty (1987) <doi:10.1016/0270-0255(87)90473-8> that allows decision-makers to weigh attributes and evaluate alternatives presented to them. This package provides a consistent methodology for researchers to reformat data and run analytic hierarchy process in R on data that are formatted using the survey data entry mode. It is optimized for performing the analytic hierarchy process with many decision-makers, and provides tools and options for researchers to aggregate individual preferences and test multiple options. It also allows researchers to quantify, visualize and correct for inconsistency in the decision-maker's comparisons.
Author: Frankie Cho [aut, cre, cph]
Maintainer: Frankie Cho <frankie.cho@monash.edu>
This is a re-admission after prior archival of version 0.4.1 dated 2019-11-24
Diff between ahpsurvey versions 0.4.1 dated 2019-11-24 and 0.4.3 dated 2026-07-16
ahpsurvey-0.4.1/ahpsurvey/R/ahpsurvey.R |only ahpsurvey-0.4.1/ahpsurvey/vignettes/my-vignette.md |only ahpsurvey-0.4.3/ahpsurvey/DESCRIPTION | 27 ahpsurvey-0.4.3/ahpsurvey/MD5 | 40 ahpsurvey-0.4.3/ahpsurvey/NAMESPACE | 1 ahpsurvey-0.4.3/ahpsurvey/NEWS.md | 13 ahpsurvey-0.4.3/ahpsurvey/R/ahp_harker.R | 5 ahpsurvey-0.4.3/ahpsurvey/R/ahp_md.R |only ahpsurvey-0.4.3/ahpsurvey/R/ahp_missing.R | 4 ahpsurvey-0.4.3/ahpsurvey/R/ahpsurvey-package.R |only ahpsurvey-0.4.3/ahpsurvey/README.md | 74 ahpsurvey-0.4.3/ahpsurvey/build/partial.rdb |binary ahpsurvey-0.4.3/ahpsurvey/build/vignette.rds |binary ahpsurvey-0.4.3/ahpsurvey/inst/doc/my-vignette.R | 99 - ahpsurvey-0.4.3/ahpsurvey/inst/doc/my-vignette.Rmd | 62 ahpsurvey-0.4.3/ahpsurvey/inst/doc/my-vignette.html | 1670 ++++++++++++-------- ahpsurvey-0.4.3/ahpsurvey/man/ahp.harker.Rd | 4 ahpsurvey-0.4.3/ahpsurvey/man/ahp.md.Rd |only ahpsurvey-0.4.3/ahpsurvey/man/ahp.missing.Rd | 4 ahpsurvey-0.4.3/ahpsurvey/man/ahpsurvey-package.Rd |only ahpsurvey-0.4.3/ahpsurvey/man/ahpsurvey.Rd | 7 ahpsurvey-0.4.3/ahpsurvey/man/city1.Rd | 4 ahpsurvey-0.4.3/ahpsurvey/man/city200.Rd | 4 ahpsurvey-0.4.3/ahpsurvey/vignettes/my-vignette.Rmd | 62 24 files changed, 1273 insertions(+), 807 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-01 1.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-13 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-11 1.0.4
2020-09-29 1.0.3
2020-07-10 1.0.2
2020-04-01 1.0.1
2018-02-11 1.0
2016-12-24 0.15
2016-11-28 0.14
2016-11-17 0.12
2016-11-01 0.9
2016-09-09 0.8
2016-07-18 0.5
2016-06-22 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-03 0.1.0