Sat, 10 Dec 2016

New package rtrends with initial version 0.1.0
Package: rtrends
Type: Package
Title: Analyze Download Logs from the CRAN RStudio Mirror
Version: 0.1.0
Author: Avi Blinder <aviblinder@gmail.com>
Maintainer: Avi Blinder <aviblinder@gmail.com>
Description: Analyze download logs from the CRAN RStudio mirror (<http://cran.rstudio.com/>). This CRAN mirror is the default one used in RStudio. The available data is the result of parsed and anonymised raw log data from that CRAN mirror.
License: GPL-2
LazyData: TRUE
Depends: R (>= 3.0.2)
Imports: lubridate, dplyr, tidyr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-09 20:46:39 UTC; Avi
Repository: CRAN
Date/Publication: 2016-12-10 14:09:05

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Fri, 09 Dec 2016

New package libcoin with initial version 0.9-0
Package: libcoin
Title: Linear Test Statistics for Permutation Inference
Date: 2016-12-09
Version: 0.9-0
Authors@R: person("Torsten", "Hothorn", role = c("aut", "cre"), email = "Torsten.Hothorn@R-project.org")
Description: Basic infrastructure for linear test statistics and permutation inference in the framework of Strasser and Weber (1999) <http://epub.wu.ac.at/102/>. This package must not be used by end-users. CRAN package 'coin' implements all user interfaces and is ready to be used by anyone.
Depends: R (>= 3.3.0)
Imports: stats, mvtnorm
LinkingTo: mvtnorm
NeedsCompilation: yes
License: GPL-2
Packaged: 2016-12-09 15:49:04 UTC; hothorn
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Repository: CRAN
Date/Publication: 2016-12-09 21:26:49

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New package predatory with initial version 1.0
Package: predatory
Title: Tools for Detecting Predatory Publishers and Journals
Version: 1.0
Authors@R: person("Marcelo", "Perlin", email = "marceloperlin@gmail.com", role = c("aut", "cre"))
Description: Allows the user to check and find (allegedly) predatory journals based on Beall's list available at <https://scholarlyoa.com/>. As part of a research project, the data from the website has been scrapped with web scraping algorithms and manual work. The package includes a search function and direct access to this database of predatory journals. The use of this tool should facilitate the detection of predatory publications by researchers and librarians.
Date: 2016-12-09
Depends: R (>= 3.3.2)
Imports: stringr, readr
License: GPL-2
LazyData: true
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown, testthat, ggplot2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-09 14:49:01 UTC; marcelo
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-09 16:19:26

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New package magree with initial version 1.0
Package: magree
Type: Package
Title: Implements the O'Connell-Dobson-Schouten Estimators of Agreement for Multiple Observers
Version: 1.0
Date: 2016-12-08
Depends: graphics
Author: Mark Clements, Dianne O'Connell
Maintainer: Mark Clements <mark.clements@ki.se>
Description: Implements an interface to the legacy Fortran code from O'Connell and Dobson (1984) <DOI:10.2307/2531148>. Implements Fortran 77 code for the methods developed by Schouten (1982) <DOI:10.1111/j.1467-9574.1982.tb00774.x>. Includes estimates of average agreement for each observer and average agreement for each subject.
License: GPL-3 | GPL-2
LazyData: yes
NeedsCompilation: yes
Packaged: 2016-12-09 14:20:11 UTC; marcle
Repository: CRAN
Date/Publication: 2016-12-09 16:19:25

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New package jsonld with initial version 1.0
Package: jsonld
Type: Package
Title: JSON for Linking Data
Version: 1.0
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Description: JSON-LD is a light-weight syntax for expressing linked data. It is primarily intended for web-based programming environments, interoperable web services and for storing linked data in JSON-based databases. This package provides bindings to the JavaScript library for converting, expanding and compacting JSON-LD documents.
License: BSD_3_clause + file LICENSE
URL: https://github.com/ropensci/jsonld#readme https://www.w3.org/TR/json-ld
BugReports: https://github.com/ropensci/jsonld/issues
Imports: V8, jsonlite, curl
RoxygenNote: 5.0.1.9000
NeedsCompilation: no
Packaged: 2016-12-09 14:21:01 UTC; jeroen
Repository: CRAN
Date/Publication: 2016-12-09 16:19:24

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New package inum with initial version 0.9-0
Package: inum
Title: Interval and Enum-Type Representation of Vectors
Date: 2016-12-09
Version: 0.9-0
Authors@R: person("Torsten", "Hothorn", role = c("aut", "cre"), email = "Torsten.Hothorn@R-project.org")
Description: Enum-type representation of vectors and representation of intervals, including a method of coercing variables in data frames.
Depends: R (>= 3.3.0)
Imports: stats
License: GPL-2
NeedsCompilation: no
Packaged: 2016-12-09 15:10:04 UTC; hothorn
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Repository: CRAN
Date/Publication: 2016-12-09 16:43:16

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New package Strategy with initial version 1.0.0
Package: Strategy
Type: Package
Title: Generic Framework to Analyze Trading Strategies
Version: 1.0.0
Date: 2016-12-07
Author: Julian Busch
Maintainer: Julian Busch <jb@quants.ch>
Depends: R (>= 3.2.0), xts, zoo, methods, graphics, grDevices, stats, utils
Description: Users can build and test customized quantitative trading strategies. Some quantitative trading strategies are already implemented, e.g. various moving-average filters with trend following approaches. The implemented class called "Strategy" allows users to access several methods to analyze performance figures, plots and backtest the strategies. Furthermore, custom strategies can be added, a generic template is available. The custom strategies require a certain input and output so they can be called from the Strategy-constructor.
License: GPL
LazyData: TRUE
Suggests: knitr
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-09 12:31:34 UTC; J.Busch
Repository: CRAN
Date/Publication: 2016-12-09 15:15:49

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New package rrr with initial version 1.0.0
Package: rrr
Title: Reduced-Rank Regression
Version: 1.0.0
Authors@R: person("Chris", "Addy", email = "chris.william.addy@gmail.com", role = c("aut", "cre"))
URL: http://github.com/chrisaddy/rrr
Description: Reduced-rank regression, diagnostics and graphics.
Depends: R (>= 3.2.0)
Imports: Rcpp, MASS, magrittr, dplyr, ggplot2, plotly, GGally
Suggests: testthat, knitr, rmarkdown, readr
Collate: utility_functions.R reduce_rank_regression.R pca.R cva.R lda.R rrr.R data.R
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-09 12:21:56 UTC; chris
Author: Chris Addy [aut, cre]
Maintainer: Chris Addy <chris.william.addy@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-09 15:15:55

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New package Wmisc with initial version 0.3.1
Package: Wmisc
Type: Package
Title: Wamser Misc: Reading Files by Tokens, Stateful Computations, Utility Functions
Version: 0.3.1
Date: 2016-12-07
Authors@R: person("Markus S.", "Wamser", email = "r-wmisc@devel.wamser.eu", role = c("aut", "cre"))
Description: A tokenizer to read a text file token by token with a very lightweight API, a framework for stateful computations with finite state machines and a few string utility functions.
LinkingTo: Rcpp
Imports: hash, Rcpp (>= 0.12.7), R6
URL: https://github.com/wamserma/R-Wmisc/
BugReports: https://github.com/wamserma/R-Wmisc/issues
License: GPL (>= 2)
LazyData: TRUE
RoxygenNote: 5.0.1
Suggests: knitr, microbenchmark, rmarkdown, testthat, covr, DiagrammeR
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-12-09 08:15:21 UTC; Markus Wamser
Author: Markus S. Wamser [aut, cre]
Maintainer: Markus S. Wamser <r-wmisc@devel.wamser.eu>
Repository: CRAN
Date/Publication: 2016-12-09 12:11:07

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New package moezipfR with initial version 1.0
Package: moezipfR
Type: Package
Title: Marshall-Olkin Extended Zipf
Version: 1.0
Date: 2016-11-09
Author: Ariel Duarte-López <aduarte@ac.upc.edu>, Aina Casellas <ainacasellas@hotmail.com>, Marta Pérez-Casany <marta.perez@upc.edu>
Maintainer: Ariel Duarte-López <aduarte@ac.upc.edu>
Description: Statistical utilities for the analysis of data by means of the Marshall-Olkin Extended Zipf distribution. By plotting the probabilities in log-log scale, this two parameter distribution allows a concave as well as a convex behavior of the function at the beginning of the distribution, maintaining the linearity in the tail. The model contains the Zipf model as a particular case.
License: GPL-3
Depends: R (>= 2.0.1)
RoxygenNote: 5.0.1
Imports: VGAM (>= 0.9.8), tolerance(>= 1.2.0), numDeriv(>= 2014.2-1), graphics(>= 3.3.1)
Encoding: UTF-8
Suggests: testthat
NeedsCompilation: no
Packaged: 2016-12-09 10:35:00 UTC; ariel
Repository: CRAN
Date/Publication: 2016-12-09 13:13:30

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New package CuCubes with initial version 0.1.0
Package: CuCubes
Title: MultiDimensional Feature Selection (MDFS)
Version: 0.1.0
Authors@R: c( person("Radosław", "Piliszek", email = "r.piliszek@uwb.edu.pl", role = c("aut", "cre")), person("Andrzej", "Sułecki", email = "asulecki@gmail.com", role = "aut"), person("Paweł", "Tabaszewski", email = "tabaszewski.pawel@gmail.com", role = "aut"), person("Krzysztof", "Mnich", email = "k.mnich@uwb.edu.pl", role = "aut"), person("Witold", "Rudnicki", email = "w.rudnicki@icm.edu.pl", role = "cph"))
URL: https://featureselector.uco.uwb.edu.pl/pub/cucubes/
Description: Functions for MultiDimensional Feature Selection (MDFS): * calculating multidimensional information gains, * finding interesting tuples for chosen variables, * scoring variables, * finding important variables, * plotting selection results. CuCubes is also known as CUDA Cubes and it is a library that allows fast CUDA-accelerated computation of information gains in binary classification problems. This package wraps CuCubes and provides an alternative CPU version as well as helper functions for building MultiDimensional Feature Selectors.
Depends: R (>= 3.2.1)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-12-09 11:19:41 UTC; feature_selector
Author: Radosław Piliszek [aut, cre], Andrzej Sułecki [aut], Paweł Tabaszewski [aut], Krzysztof Mnich [aut], Witold Rudnicki [cph]
Maintainer: Radosław Piliszek <r.piliszek@uwb.edu.pl>
Repository: CRAN
Date/Publication: 2016-12-09 13:13:25

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New package aws.sqs with initial version 0.1.8
Package: aws.sqs
Type: Package
Title: AWS SQS Client Package
Version: 0.1.8
Date: 2016-12-09
Authors@R: c(person("Thomas J.", "Leeper", role = c("aut", "cre"), email = "thosjleeper@gmail.com"))
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Description: A simple client package for the Amazon Web Services (AWS) Simple Queue Service (SQS) API.
License: GPL (>= 2)
Imports: httr, xml2, jsonlite, aws.signature (>= 0.2.6)
Suggests: testthat
URL: https://github.com/cloudyr/aws.sqs
BugReports: https://github.com/cloudyr/aws.sqs/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-09 10:17:05 UTC; THOMAS
Author: Thomas J. Leeper [aut, cre]
Repository: CRAN
Date/Publication: 2016-12-09 12:11:08

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New package stable with initial version 1.1.0
Package: stable
Version: 1.1.0
Title: Probability Functions and Generalized Regression Models for Stable Distributions
Authors@R: c( person("Bruce", "Swihart", email="bruce.swihart@gmail.com", role=c("cre", "aut")), person("Jim" , "Lindsey", email="jlindsey@gen.unimaas.nl", role="aut", comment="Jim created this package, Bruce is maintaining the CRAN version"), person("Philippe", "Lambert", email="phlambert@stat.ucl.ac.be", role="aut") )
Depends: R (>= 1.4), rmutil
Description: Density, distribution, quantile and hazard functions of a stable variate; generalized regression models for the parameters of a stable distribution.
License: GPL (>= 2)
URL: http://www.commanster.eu/rcode.html
BugReports: https:/github.com/swihart/stable/issues
Encoding: UTF-8
LazyData: true
LazyLoad: true
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-12-09 02:07:53 UTC; swihartbj
Author: Bruce Swihart [cre, aut], Jim Lindsey [aut] (Jim created this package, Bruce is maintaining the CRAN version), Philippe Lambert [aut]
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-09 08:58:57

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New package GLMaSPU with initial version 1.0
Package: GLMaSPU
Type: Package
Title: An Adaptive Test on High Dimensional Parameters in Generalized Linear Models
Version: 1.0
Date: 2016-10-10
Author: Chong Wu and Wei Pan
Maintainer: Chong Wu <wuxx0845@umn.edu>
Description: Several tests for high dimensional generalized linear models have been proposed recently. In this package, we implemented a new test called adaptive sum of powered score (aSPU) for high dimensional generalized linear models, which is often more powerful than the existing methods in a wide scenarios. We also implemented permutation based version of several existing methods for research purpose. We recommend users use the aSPU test for their real testing problem. You can learn more about the tests implemented in the package via the following papers: 1. Pan, W., Kim, J., Zhang, Y., Shen, X. and Wei, P. (2014) <DOI:10.1534/genetics.114.165035> A powerful and adaptive association test for rare variants, Genetics, 197(4). 2. Guo, B., and Chen, S. X. (2016) <DOI:10.1111/rssb.12152>. Tests for high dimensional generalized linear models. Journal of the Royal Statistical Society: Series B. 3. Goeman, J. J., Van Houwelingen, H. C., and Finos, L. (2011) <DOI:10.1093/biomet/asr016>. Testing against a high-dimensional alternative in the generalized linear model: asymptotic type I error control. Biometrika, 98(2).
License: GPL-2
Imports: MASS, mnormt, Rcpp (>= 0.12.6)
Depends: R (>= 3.1.1), mvtnorm (>= 1.0-0)
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-12-08 21:41:49 UTC; chong
Repository: CRAN
Date/Publication: 2016-12-09 08:58:42

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Thu, 08 Dec 2016

New package replyr with initial version 0.1.0
Package: replyr
Type: Package
Title: Fluid Use of 'dplyr'
Version: 0.1.0
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>
URL: https://github.com/WinVector/replyr
BugReports: https://github.com/WinVector/replyr/issues
Description: Methods to get a grip on working with remote 'tbl' sources ('SQL' databases, 'Spark') through 'dplyr'. Adds convenience functions to make such tasks more like working with an in-memory 'data.frame'. Results do depend on which 'dplyr' data service you use.
License: GPL-3
LazyData: TRUE
Imports: dplyr, magrittr, tibble, lazyeval
RoxygenNote: 5.0.1
Suggests: testthat, knitr, rmarkdown, tidyr, RSQLite, DBI, ggplot2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-08 21:22:45 UTC; johnmount
Repository: CRAN
Date/Publication: 2016-12-09 02:04:57

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New package aws.sns with initial version 0.1.5
Package: aws.sns
Type: Package
Title: AWS SNS Client Package
Version: 0.1.5
Date: 2016-12-08
Author: Thomas J. Leeper
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Description: A simple client package for the Amazon Web Services (AWS) Simple Notification Service (SNS) API.
License: GPL (>= 2)
Imports: stats, httr, xml2, jsonlite, aws.signature (>= 0.2.6)
URL: https://github.com/cloudyr/aws.sns
BugReports: https://github.com/cloudyr/aws.sns/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-08 17:48:18 UTC; THOMAS
Repository: CRAN
Date/Publication: 2016-12-08 19:45:53

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New package aws.polly with initial version 0.1.2
Package: aws.polly
Type: Package
Title: Client for AWS Polly
Version: 0.1.2
Date: 2016-12-07
Authors@R: c(person("Thomas J.", "Leeper", role = c("aut", "cre"), email = "thosjleeper@gmail.com"))
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Description: A client for AWS Polly <http://aws.amazon.com/documentation/polly>, a speech synthesis service.
License: GPL (>= 2)
URL: https://github.com/cloudyr/aws.polly
BugReports: https://github.com/cloudyr/aws.polly/issues
Imports: httr, jsonlite, aws.signature (>= 0.2.6), tuneR
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-08 16:42:30 UTC; THOMAS
Author: Thomas J. Leeper [aut, cre]
Repository: CRAN
Date/Publication: 2016-12-08 18:38:47

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New package TOSTER with initial version 0.1.3
Package: TOSTER
Version: 0.1.3
Date: 2016-12-8
Title: Two One-Sided Tests (TOST) Equivalence Testing
Description: Two one-sided tests (TOST) procedure to test equivalence for t-tests, correlations, and meta-analyses, including power analysis for t-tests and correlations. Allows you to specify equivalence bounds in raw scale units or in terms of effect sizes.
Author: Daniel Lakens <D.Lakens@tue.nl>
Maintainer: Daniel Lakens <D.Lakens@tue.nl>
License: GPL-3
RoxygenNote: 5.0.1
Imports: stats, graphics
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-08 07:41:58 UTC; Daniel
Repository: CRAN
Date/Publication: 2016-12-08 15:29:55

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New package rForest with initial version 0.1
Package: rForest
Type: Package
Title: Forest Inventory and Analysis
Version: 0.1
Date: 2016-01-17
Author: Carlos A. Silva, Carine Klauberg Silva, Samuel P. C. Carvalho and Manoela de O. Rosa and Joao P. S. Madi
Maintainer: Carlos Alberto Silva <carlos_engflorestal@hotmail.com>
Depends: R (>= 3.1.2)
Imports: sp,geometry,rgl,alphashape3d
Description: Set of tools designed for forest inventory analysis.
License: GPL (>= 2)
RoxygenNote: 5.0.1
Repository: CRAN
Repository/R-Forge/Project: rforest
Repository/R-Forge/Revision: 11
Repository/R-Forge/DateTimeStamp: 2016-12-07 23:03:11
Date/Publication: 2016-12-08 15:30:00
NeedsCompilation: no
Packaged: 2016-12-07 23:10:25 UTC; rforge

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New package Radviz with initial version 0.7.0
Package: Radviz
Type: Package
Title: Project Multidimensional Data in 2D Space
Version: 0.7.0
Authors@R: person('Yann','Abraham',email='yann.abraham@gmail.com',role=c('aut','cre'))
Depends: R (>= 2.15)
Imports: graphics, stats, utils, grid, gridBase, hexbin, MASS, KernSmooth
Suggests: knitr, rmarkdown, bodenmiller, colorspace
Description: An implementation of the radviz projection in R. It enables the visualization of multidimensional data while maintaining the relation to the original dimensions. This package provides functions to create and plot radviz projections, and a number of summary plots that enable comparison and analysis. For reference see Ankerst et al. (1996) <http://citeseer.ist.psu.edu/viewdoc/summary?doi=10.1.1.68.1811> for original implementation, see Di Caro et al. (2010) <DOI:10.1007/978-3-642-13672-6_13> for the original method for dimensional anchor arrangements.
License: CC BY-NC-SA 4.0
URL: http://github.com/yannabraham/Radviz
BugReports: http://github.com/yannabraham/Radviz/issues
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-08 08:40:27 UTC; ayann
Author: Yann Abraham [aut, cre]
Maintainer: Yann Abraham <yann.abraham@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-08 15:29:53

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New package growth with initial version 1.1.0
Package: growth
Version: 1.1.0
Title: Multivariate Normal and Elliptically-Contoured Repeated Measurements Models
Authors@R: c( person("Bruce", "Swihart", email="bruce.swihart@gmail.com", role=c("cre", "aut")), person("Jim" , "Lindsey", email="jlindsey@gen.unimaas.nl", role="aut", comment="Jim created this package, Bruce is maintaining the CRAN version"))
Depends: R (>= 1.4), rmutil
Description: Functions for fitting various normal theory (growth curve) and elliptically-contoured repeated measurements models with ARMA and random effects dependence.
License: GPL (>= 2)
URL: http://www.commanster.eu/rcode.html
BugReports: https:/github.com/swihart/growth/issues
Encoding: UTF-8
LazyData: true
LazyLoad: true
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-12-08 02:02:08 UTC; swihartbj
Author: Bruce Swihart [cre, aut], Jim Lindsey [aut] (Jim created this package, Bruce is maintaining the CRAN version)
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-08 15:29:58

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New package GreedyExperimentalDesign with initial version 1.0
Package: GreedyExperimentalDesign
Type: Package
Title: Greedy Experimental Design Construction
Version: 1.0
Date: 2016-12-8
Author: Adam Kapelner, David Azriel and Abba M. Krieger
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Description: Computes experimental designs for a two-arm experiment with covariates by greedily optimizing a balance objective function. This optimization provides lower variance for the treatment effect estimator (and higher power) while preserving a design that is close to complete randomization. We return all iterations of the designs for use in a permutation test.
License: GPL-3
Depends: R (>= 3.2.0), rJava (>= 0.9-6)
SystemRequirements: Java (>= 1.7.0)
Imports: graphics, grDevices, stats
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-08 14:01:16 UTC; Kapelner
Repository: CRAN
Date/Publication: 2016-12-08 16:12:24

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New package gofMC with initial version 1.1.2
Package: gofMC
Title: Goodness of Fit Noise Analysis Using Monte Carlo Techniques
Version: 1.1.2
Date: 2016-12-08
Author: Joseph G Kreke, PhD; Harris, Inc. Sangeet Khemlani, PhD; Naval Research Laboratory. Greg Trafton, PhD; Naval Research Laboratory.
Maintainer: Joseph G Kreke <jkreke2@gmail.com>
Description: Goodness-of-fit metrics, such as R-Squared, RMSE, etc., share a sensitivity to noise, dependent on the degrees of freedom. Some metrics, such as R-Squared, decrease with increasing dof and some, such as RMSE, increase with increasing dof. This package calculates the noise baseline (ceiling) by random sampling, calculating the metric’s value for each sample and counting the number of samples below a desired level, 95% by default. If one’s measure is above (below) the calculation corresponding to the desired level, then the measurement is distinguishable from noise. In addition, the ratio of the measurement to the calculated level provides a way to compare measurements of different degrees of freedom.
Depends: R (>= 3.3.1), ggplot2, grDevices, scales, stats
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1.9000
NeedsCompilation: no
Packaged: 2016-12-08 12:28:40 UTC; kreke
Repository: CRAN
Date/Publication: 2016-12-08 15:29:56

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Wed, 07 Dec 2016

New package narray with initial version 0.1.1
Package: narray
Title: R Package for Handling Arrays in a Consistent Manner
Version: 0.1.1
Author: Michael Schubert <mschu.dev@gmail.com>
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Description: Provides functions to query and manipulate arrays of arbitrary dimensions.
Depends: R (>= 3.0.2)
Imports: abind, pryr, reshape2, stats, stringr, utils
License: Apache License (== 2.0) | file LICENSE
LazyData: true
Encoding: UTF-8
Suggests: knitr, testthat
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-07 11:59:29 UTC; mschu
Repository: CRAN
Date/Publication: 2016-12-07 15:54:20

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New package EfficientMaxEigenpair with initial version 0.1.0
Package: EfficientMaxEigenpair
Type: Package
Title: Efficient Initials for Computing the Maximal Eigenpair
Version: 0.1.0
Date: 2016-12-03
Author: Mu-Fa Chen <mfchen@bnu.edu.cn>
Maintainer: Xiao-Jun Mao <maoxj.ki@gmail.com>
Description: An implementation for using efficient initials to compute the maximal eigenpair in R. It provides two algorithms to find the efficient initials under two cases: the tridiagonal matrix case and the general matrix case. Besides, it also provides algorithms for the next to the maximal eigenpair under these two cases.
License: MIT + file LICENSE
URL: http://github.com/mxjki/EfficientMaxEigenpair
BugReports: http://github.com/mxjki/EfficientMaxEigenpair/issues
Depends: R (>= 3.3.2), stats
Encoding: UTF-8
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-07 08:16:13 UTC; xiaojunmao
Repository: CRAN
Date/Publication: 2016-12-07 13:46:29

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New package rclimateca with initial version 0.1
Package: rclimateca
Type: Package
Title: Fetch Climate Data from Environment Canada
Version: 0.1
Date: 2016-12-05
Author: Dewey Dunnington <dewey@fishandwhistle.net>
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Description: The Environment Canada climate archives <http://climate.weather.gc.ca/> are an important source of data for climate researchers in Canada and world wide. The repository contains temperature, precipitation, and wind data for more than 8,000 locations. The functions in this package simplify the process of downloading, subsetting, and manipulating these data for the purposes of more efficient workflows in climate research.
License: GPL-3
Depends: R (>= 2.10)
Imports: digest, httr, prettymapr, reshape2, lubridate
Suggests: ggplot2
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-06 21:53:18 UTC; dewey
Repository: CRAN
Date/Publication: 2016-12-07 08:43:50

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New package gnlm with initial version 1.1.0
Package: gnlm
Version: 1.1.0
Title: Generalized Nonlinear Regression Models
Authors@R: c( person("Bruce", "Swihart", email="bruce.swihart@gmail.com", role=c("cre", "aut")), person("Jim" , "Lindsey", email="jlindsey@gen.unimaas.nl", role="aut", comment="Jim created this package, Bruce is maintaining the CRAN version") )
Depends: R (>= 1.4), rmutil
Description: A variety of functions to fit linear and nonlinear regression with a large selection of distributions.
License: GPL (>= 2)
URL: http://www.commanster.eu/rcode.html
BugReports: https:/github.com/swihart/gnlm/issues
Encoding: UTF-8
LazyData: true
LazyLoad: true
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-12-06 20:14:05 UTC; swihartbj
Author: Bruce Swihart [cre, aut], Jim Lindsey [aut] (Jim created this package, Bruce is maintaining the CRAN version)
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-07 08:43:43

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Tue, 06 Dec 2016

New package shadow with initial version 0.1.3
Package: shadow
Type: Package
Title: R Package for Geometric Shade Calculations
Version: 0.1.3
Authors@R: c( person("Michael", "Dorman", email = "dorman@post.bgu.ac.il", role = c("aut", "cre")), person("Evyatar", "Erell", email = "erell@bgu.ac.il", role = c("ctb")), person("Itai", "Kloog", email = "ikloog@gmail.com", role = c("ctb")), person("Adi", "Vulkan", email = "vulkan@post.bgu.ac.il", role = c("ctb")))
Description: Functions for calculating (1) shade height at a single point, (2) shaded proportion of a building facade; (3) a polygonal layer of shade footprints on the ground; and (4) Sky View Factor value at a single point. Typical inputs include a polygonal layer of buildings outline along with the height of each building, sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: converting polygons to line segments, finding segment azimuth, shifting segments by azimuth and distance, and constructing the footprint of a line of sight between an observer and the sun.
License: MIT + file LICENSE
LazyData: TRUE
Imports: rgeos (>= 0.3), raster (>= 2.4-15), Rcpp (>= 0.12.5), methods
Depends: R (>= 3.2.3), sp (>= 1.1.1)
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown, bookdown, maptools (>= 0.8), testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-06 16:18:00 UTC; michael
Author: Michael Dorman [aut, cre], Evyatar Erell [ctb], Itai Kloog [ctb], Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Repository: CRAN
Date/Publication: 2016-12-07 02:36:08

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New package event with initial version 1.1.0
Package: event
Version: 1.1.0
Title: Event History Procedures and Models
Authors@R: c( person("Bruce", "Swihart", email="bruce.swihart@gmail.com", role=c("cre", "aut")), person("Jim" , "Lindsey", email="jlindsey@gen.unimaas.nl", role="aut", comment="Jim created this package, Bruce is maintaining the CRAN version"))
Depends: R (>= 1.4), rmutil
Description: Functions for setting up and analyzing event history data.
License: GPL-2
URL: http://www.commanster.eu/rcode.html
BugReports: https:/github.com/swihart/event/issues
Encoding: UTF-8
LazyData: true
LazyLoad: true
NeedsCompilation: yes
Packaged: 2016-12-06 19:30:06 UTC; swihartbj
Author: Bruce Swihart [cre, aut], Jim Lindsey [aut] (Jim created this package, Bruce is maintaining the CRAN version)
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-07 02:55:00

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New package cellWise with initial version 1.0.0
Package: cellWise
Type: Package
Version: 1.0.0
Date: 2016-12-06
Title: Analyzing Data with Cellwise Outliers
Authors@R: c( person(given="Jakob",family="Raymaekers", role = c("aut","cre"), email="jakob.raymaekers@kuleuven.be"), person(given="Peter",family="Rousseeuw", role = c("aut")), person(given="Wannes",family="Van den Bossche", role = c("aut")) )
Depends: R (>= 3.2.0)
Suggests: knitr, robustHD, robustbase, rrcov, MASS
Imports: reshape2, scales, ggplot2, matrixStats, gridExtra
Description: Tools for detecting cellwise outliers and robust methods to analyze data which may contain them.
License: GPL (>= 2)
LazyLoad: yes
Author: Jakob Raymaekers [aut, cre], Peter Rousseeuw [aut], Wannes Van den Bossche [aut]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-06 16:01:54 UTC; JakobR
Repository: CRAN
Date/Publication: 2016-12-07 02:29:23

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New package icesVocab with initial version 1.1-0
Package: icesVocab
Version: 1.1-0
Date: 2016-12-08
Title: ICES Vocabularies Database Web Services
Authors@R: c(person("Colin", "Millar", role=c("aut","cre"), email="colin.millar@ices.dk"), person("Arni", "Magnusson", role="aut"))
Imports: utils, XML
Suggests: testthat
Description: R interface to access the RECO POX web services of the ICES (International Council for the Exploration of the Sea) Vocabularies database <http://vocab.ices.dk/services/POX.aspx>.
License: GPL (>= 2)
URL: http://vocab.ices.dk/services/POX.aspx
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-06 12:28:24 UTC; colin
Author: Colin Millar [aut, cre], Arni Magnusson [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>
Repository: CRAN
Date/Publication: 2016-12-06 14:04:42

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New package robustsae with initial version 0.1.0
Package: robustsae
Type: Package
Title: Robust Bayesian Small Area Estimation
Version: 0.1.0
Date: 2016-12-05
Author: Malay Ghosh, Jiyoun Myung, Fernando Moura
Maintainer: Jiyoun Myung <jiyoun@ufl.edu>
Description: Functions for Robust Bayesian Small Area Estimation.
License: GPL-3
LazyData: true
Depends: R(>= 3.1.0), MCMCpack, coda, lattice, mvtnorm, pscl
NeedsCompilation: yes
Repository: CRAN
Packaged: 2016-12-06 04:41:37 UTC; yongator
Date/Publication: 2016-12-06 07:52:43

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New package msaR with initial version 0.1.0
Package: msaR
Title: Multiple Sequence Alignment for R Shiny
Version: 0.1.0
Authors@R: c(person("Benedikt", "Rauscher", email = "b.rauscher@dkfz-heidelberg.de", role = c("aut", "cph")), person('Zachary', 'Charlop-Powers', role=c('cre', 'aut'), email='zach.charlop.powers@gmail.com'))
Description: Visualises multiple sequence alignments dynamically within the Shiny web application framework.
Depends: R (>= 3.2.2)
License: BSL-1.0
Imports: ape, htmlwidgets
Suggests: Biostrings, knitr, rmarkdown
LazyData: true
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-05 23:12:24 UTC; zachpowers
Author: Benedikt Rauscher [aut, cph], Zachary Charlop-Powers [cre, aut]
Maintainer: Zachary Charlop-Powers <zach.charlop.powers@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-06 07:52:40

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New package intrval with initial version 0.1-0
Package: intrval
Type: Package
Title: Relational Operators for Intervals
Version: 0.1-0
Date: 2016-12-05
Author: Peter Solymos
Maintainer: Peter Solymos <solymos@ualberta.ca>
Description: Evaluating if values of vectors are within different open/closed intervals (`x %[]% c(a, b)`), or if two closed intervals overlap (`c(a1, b1) %[o]% c(a2, b2)`). Operators for negation and directional relations also implemented.
License: GPL-2
URL: https://github.com/psolymos/intrval
BugReports: https://github.com/psolymos/intrval/issues
LazyLoad: yes
LazyData: true
NeedsCompilation: no
Packaged: 2016-12-06 02:02:49 UTC; root
Repository: CRAN
Date/Publication: 2016-12-06 07:52:35

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Mon, 05 Dec 2016

New package rt3 with initial version 0.1.2
Package: rt3
Type: Package
Title: Tic-Tac-Toe Package for R
Version: 0.1.2
Author: Johan Jordaan
Maintainer: Johan Jordaan <djjordaan@gmail.com>
Description: Play the classic game of tic-tac-toe (naughts and crosses).
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: no
Packaged: 2016-12-05 20:55:21 UTC; johanjordaan
Repository: CRAN
Date/Publication: 2016-12-05 23:43:08

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New package rfordummies with initial version 0.1.3
Package: rfordummies
Title: Code Examples to Accompany the Book "R for Dummies"
Version: 0.1.3
Authors@R: c(person("Andrie", "de Vries", role=c("aut", "cre"), email="apdevries@gmail.com"), person("Joris", "Meys", role = c("aut")))
Description: Contains all the code examples in the book "R for Dummies" (1st edition). You can view the table of contents as well as the sample code for each chapter.
Date: 2016-12-04
URL: http://rfordummies.com
BugReports: https://github.com/andrie/rfordummies/issues
Suggests: fortunes, stringr, sos, XLConnect, reshape2, ggplot2, foreign, lattice
License: GPL-2 | GPL-3
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-04 21:52:54 UTC; adevries
Author: Andrie de Vries [aut, cre], Joris Meys [aut]
Maintainer: Andrie de Vries <apdevries@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-05 23:39:53

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New package xLLiM with initial version 1.0
Package: xLLiM
Type: Package
Title: High Dimensional Locally-Linear Mapping
Version: 1.0
Author: Emeline Perthame (emeline.perthame@inria.fr), Florence Forbes (florence.forbes@inria.fr), Antoine Deleforge (antoine.deleforge@inria.fr)
Maintainer: Emeline Perthame <perthame.emeline@gmail.com>
Description: Provides a tool for non linear mapping (non linear regression) using a mixture of regression model and an inverse regression strategy. The methods include the GLLiM model (see Deleforge et al (2015) <DOI:10.1007/s11222-014-9461-5>) based on Gaussian mixtures and a robust version of GLLiM, named SLLiM (see Perthame et al (2016) <https://hal.archives-ouvertes.fr/hal-01347455>) based on a mixture of Generalized Student distributions.
License: GPL (>= 2)
Depends:
Imports: MASS,abind,corpcor,Matrix
NeedsCompilation: no
Packaged: 2016-12-05 14:11:55 UTC; Emeline
Repository: CRAN
Date/Publication: 2016-12-05 22:56:08

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New package tswge with initial version 1.0.0
Package: tswge
Type: Package
Title: Applied Time Series Analysis
Version: 1.0.0
Date: 2016-12-4
Author: Wayne Woodward
Maintainer: Wayne Woodward <waynew@smu.edu>
Description: Accompanies the text Applied Time Series Analysis with R, 2nd edition by Woodward, Gray, and Elliott. It is helpful for data analysis and for time series instruction.
Imports: signal,PolynomF,MASS,waveslim,astsa
License: GPL-2
NeedsCompilation: no
Packaged: 2016-12-05 16:52:39 UTC; 00013961
Repository: CRAN
Date/Publication: 2016-12-05 22:59:11

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New package melviewr with initial version 0.0.1
Package: melviewr
Type: Package
Title: View and Classify MELODIC Output for ICA+FIX
Version: 0.0.1
Authors@R: person("Andrew", "Poppe", email = "Poppe076@gmail.com", role = c("aut", "cre"))
Description: Provides a graphical interface that allows the user to easily view and classify output from 'MELODIC', a part of the 'FSL' neuroimaging analysis software suite that performs independent component analysis (ICA; see <https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/MELODIC/> for more information). The user categorizes a component as signal or noise based on its spatial and temporal characteristics and can then save a text file of these classifications in the format required by 'ICA+FIX', an automatic noise removal tool (<https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX>).
URL: https://github.com/AndrewPoppe/melviewr
BugReports: https://github.com/AndrewPoppe/melviewr/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: gtools, RColorBrewer, RNifti, grDevices, RGtk2, cairoDevice, methods, jsonlite
Depends: gWidgetsRGtk2, gWidgets
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-05 21:47:54 UTC; poppe076
Author: Andrew Poppe [aut, cre]
Maintainer: Andrew Poppe <Poppe076@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-05 23:02:45

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New package gafit with initial version 0.5.1
Package: gafit
Version: 0.5.1
Date: 2016-12-05
Title: Genetic Algorithm for Curve Fitting
Author: Telford Tendys <gafit@lnx-bsp.net>
Maintainer: Telford Tendys <gafit@lnx-bsp.net>
Depends: R (>= 3.0.0)
Description: A group of sample points are evaluated against a user-defined expression, the sample points are lists of parameters with values that may be substituted into that expression. The genetic algorithm attempts to make the result of the expression as low as possible (usually this would be the sum of residuals squared).
License: GPL-2
URL: http://lnx-bsp.net/
Packaged: 2016-12-04 22:24:17 UTC; telford
Repository: CRAN
Date/Publication: 2016-12-05 22:52:27
NeedsCompilation: yes

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New package misreport with initial version 0.1.0
Package: misreport
Title: Statistical Analysis of Misreporting on Sensitive Survey Questions
Description: Enables investigation of the predictors of misreporting on sensitive survey questions through a multivariate list experiment regression method. The method permits researchers to model whether a survey respondent's answer to the sensitive item in a list experiment is different from his or her answer to an analogous direct question.
Authors@R: person("Gregory", "Eady", email = "gregory.eady@gmail.com", role = c("aut", "cre"))
Version: 0.1.0
Depends: R (>= 3.2.0)
Imports: numDeriv (>= 2014.2-1), VGAM (>= 1.0-2), mvtnorm (>= 1.0-5)
Suggests: knitr, rmarkdown
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-05 12:56:39 UTC; gregoryeady
Author: Gregory Eady [aut, cre]
Maintainer: Gregory Eady <gregory.eady@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-05 14:49:26

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New package bridger2 with initial version 0.1.0
Package: bridger2
Title: Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
Version: 0.1.0
Authors@R: person("Naoto", "Imamachi", email = "naoto.imamachi@gmail.com", role = c("aut", "cre"))
Description: BRIC-seq is a genome-wide approach for determining RNA stability in mammalian cells. This package provides a series of functions for performing quality check of your BRIC-seq data, calculation of RNA half-life for each transcript and comparison of RNA half-lives between two conditions.
Depends: R (>= 3.3.1)
Imports: data.table, ggplot2, shiny, shinydashboard, plotly, BSDA, outliers
Suggests: testthat
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-05 11:08:16 UTC; Naoto
Author: Naoto Imamachi [aut, cre]
Maintainer: Naoto Imamachi <naoto.imamachi@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-05 14:49:24

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New package bannerCommenter with initial version 0.1.0
Package: bannerCommenter
Type: Package
Title: Make Banner Comments with a Consistent Format
Version: 0.1.0
Author: Bill Venables <Bill.Venables@gmail.com>
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Description: A convenience package for use while drafting code. It facilitates making stand-out comment lines decorated with bands of characters. The input text strings are converted into R comment lines, suitably formatted. These are then displayed in a console window and, if possible, automatically transferred to a clipboard ready for pasting into an R script. Designed to save time when drafting R scripts that will need to be navigated and maintained by other programmers.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown, dplyr, datasets
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-05 12:46:58 UTC; bill
Repository: CRAN
Date/Publication: 2016-12-05 14:49:23

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New package stringformattr with initial version 0.1.0
Package: stringformattr
Type: Package
Title: Dynamic String Formatting
Version: 0.1.0
Author: Alexander Hoyle
Maintainer: Alexander <ahoyle@wesleyan.edu>
Description: Pass named and unnamed character vectors into specified positions in strings. This represents an attempt to replicate some of python's string formatting.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
Imports: stringr
NeedsCompilation: no
Packaged: 2016-12-04 17:47:19 UTC; Alexander Hoyle
Repository: CRAN
Date/Publication: 2016-12-05 08:27:44

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New package AmmoniaConcentration with initial version 0.1
Package: AmmoniaConcentration
Version: 0.1
Author: Monica Serra <monicaserra.bio04@gmail.com> and Felipe Tumenas Marques <tumenas@gmail.com>
Maintainer: Felipe Tumenas Marques <tumenas@gmail.com>
Title: Un-Ionized Ammonia Concentration
Description: Provides a function to calculate the concentration of un-ionized ammonia in the total ammonia in aqueous solution using the pH and temperature values.
License: MIT + file LICENSE
URL: https://github.com/tumenas/ammonia
NeedsCompilation: no
Packaged: 2016-12-04 18:34:58 UTC; tumenas
Repository: CRAN
Date/Publication: 2016-12-05 08:27:18

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Sun, 04 Dec 2016

New package SISIR with initial version 0.1
Package: SISIR
Type: Package
Title: Sparse Interval Sliced Inverse Regression
Version: 0.1
Date: 2016-12-04
Authors@R: c( person("Victor", "Picheny", , "victor.picheny@inra.fr", c("aut")), person("Remi", "Servien", , "remi.servien@inra.fr", c("aut")), person("Nathalie", "Villa-Vialaneix", , "nathalie.villa-vialaneix@inra.fr", c("aut", "cre")))
Maintainer: Nathalie Villa-Vialaneix <nathalie.villa-vialaneix@inra.fr>
Description: An interval fusion procedure for functional data in the semiparametric framework of SIR. Standard ridge and sparse SIR are also included in the package.
Depends: foreach, doParallel
Imports: Matrix, expm, RSpectra, glmnet
License: GPL (>= 2)
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-04 15:10:52 UTC; nathalie
Author: Victor Picheny [aut], Remi Servien [aut], Nathalie Villa-Vialaneix [aut, cre]
Repository: CRAN
Date/Publication: 2016-12-04 17:29:55

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New package optimization with initial version 1.0-1
Package: optimization
Type: Package
Title: Multi-Purpose Optimization
Version: 1.0-1
Date: 2016-11-28
Author: Kai Husmann and Alexander Lange
Maintainer: Kai Husmann <khusman1@uni-goettingen.de>
Description: Flexible multi-purpose optimizer with numerous input specifications. It allows a very detailed parameterization and is therefore useful for specific and complex loss functions, like functions with discrete parameter space. Visualization tools for validation and analysis of the convergence are also included.
License: GPL (>= 2)
Depends: R (>= 3.2.0), Rcpp (>= 0.12.3)
Imports: colorspace
Packaged: 2016-12-04 10:36:06 UTC; kai
LinkingTo: Rcpp
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-12-04 17:34:58

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New package SkyWatchr with initial version 0.5-0
Package: SkyWatchr
Type: Package
Title: Wrapper for the SkyWatch API
Version: 0.5-0
Date: 2016-12-03
Author: Ali Santacruz, SkyWatch API Developers
Maintainer: Ali Santacruz <amsantac@unal.edu.co>
Description: Query and download satellite imagery and climate/atmospheric datasets using the SkyWatch API. Search datasets by wavelength (band), cloud cover, resolution, location, date, etc. Get the query results as data frame and as HTML. To learn more about the SkyWatch API, see <https://github.com/skywatchspaceapps/api>.
Depends: R (>= 2.14.0), httr, htmlTable, sp, methods
License: GPL (>= 2)
URL: https://github.com/amsantac/SkyWatchr
Encoding: latin1
LazyData: true
NeedsCompilation: no
Packaged: 2016-12-03 17:12:57 UTC; Al
Repository: CRAN
Date/Publication: 2016-12-04 14:52:32

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New package DCM with initial version 0.1.0
Package: DCM
Type: Package
Version: 0.1.0
Date: 2016-12-02
Title: Data Converter Module
Author: Delphi Intelligence
Maintainer: Nery Sofia Huerta-Pacheco <nehuerta@uv.mx>
Depends: R(>= 3.0.0), tcltk, gWidgets
Description: Data Converter Module (DCM) converts the dataset format from split into stack and to the reverse.
Imports: readxl, pander
SystemRequirements: Tcl/Tk package
License: GPL (>= 2)
URL: http://www.uv.mx/personal/nehuerta/dcm/
NeedsCompilation: no
Encoding: UTF-8
RoxygenNote: 5.0.1
Packaged: 2016-12-04 12:44:04 UTC; sofiahuerta
Repository: CRAN
Date/Publication: 2016-12-04 15:05:16

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Sat, 03 Dec 2016

New package rWind with initial version 0.1.3
Package: rWind
Encoding: UTF-8
Type: Package
Title: Download, Edit and Transform Wind Data from GFS
Version: 0.1.3
Date: 2016-11-24
BugReports: http://allthiswasfield.blogspot.com.es/
Author: Javier Fernández-López <jflopez@rjb.csic.es>
Maintainer: Javier Fernández-López <jflopez@rjb.csic.es>
Description: Tools for downloading, editing and transforming wind data from Global Forecast System (GFS, see <https://www.ncdc.noaa.gov/data-access/model-data/model-datasets/global-forcast-system-gfs>) of the USA's National Weather Service (NWS, see <http://www.weather.gov/>).
URL: http://allthiswasfield.blogspot.com.es/
License: GPL (>= 3)
LazyData: TRUE
Imports: raster, shape
Packaged: 2016-12-03 10:11:08 UTC; root
Depends: R (>= 2.10)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-12-03 12:19:59

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New package rhnerm with initial version 1.1
Package: rhnerm
Type: Package
Title: Random Heteroscedastic Nested Error Regression
Version: 1.1
Author: Shonosuke Sugasawa
Maintainer: Shonosuke Sugasawa <shonosuke622@gmail.com>
Description: Performs the random heteroscedastic nested error regression model described in Kubokawa, Sugasawa, Ghosh and Chaudhuri (2016) <doi:10.5705/ss.202014.0070>.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-12-03 11:48:13 UTC; shonosuke
Repository: CRAN
Date/Publication: 2016-12-03 13:24:59

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New package colf with initial version 0.1.2
Package: colf
Type: Package
Title: Constrained Optimization on Linear Function
Version: 0.1.2
Authors@R: person("Theo", "Boutaris", email = "theo.boutaris@lyzander.com", role = c("aut", "cre", "cph"))
URL: https://github.com/LyzandeR/colf
BugReports: https://github.com/LyzandeR/colf/issues
Depends: R (>= 3.2.0), nlmrt, stats
Description: Performs least squares constrained optimization on a linear objective function. It contains a number of algorithms to choose from and offers a formula syntax similar to lm().
License: MIT + file LICENSE
LazyData: TRUE
RoxygenNote: 5.0.1
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-03 01:09:34 UTC; teoboot
Author: Theo Boutaris [aut, cre, cph]
Maintainer: Theo Boutaris <theo.boutaris@lyzander.com>
Repository: CRAN
Date/Publication: 2016-12-03 12:19:55

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Fri, 02 Dec 2016

New package PepSAVIms with initial version 0.9.0
Package: PepSAVIms
Type: Package
Title: PepSAVI-MS Data Analysis
Version: 0.9.0
Date: 2016-11-30
Authors@R: c( person("Pritchard", "David", email="dpritch@live.unc.edu", role=c("aut", "cre")), person("Kirkpatrick", "Christine", email="ckirkpat@live.unc.edu", role="aut"))
Description: An implementation of the data processing and data analysis portion of a pipeline named the PepSAVI-MS which is currently under development by the Hicks laboratory at the University of North Carolina. The statistical analysis package presented herein provides a collection of software tools used to facilitate the prioritization of putative bioactive peptides from a complex biological matrix. Tools are provided to deconvolute mass spectrometry features into a single representation for each peptide charge state, filter compounds to include only those possibly contributing to the observed bioactivity, and prioritize these remaining compounds for those most likely contributing to each bioactivity data set.
License: CC BY-NC-SA 4.0
LazyData: TRUE
Depends: R (>= 3.0.0)
Suggests: testthat, knitr
Imports: elasticnet
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-02 15:00:07 UTC; dpritch
Author: Pritchard David [aut, cre], Kirkpatrick Christine [aut]
Maintainer: Pritchard David <dpritch@live.unc.edu>
Repository: CRAN
Date/Publication: 2016-12-03 01:34:44

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New package jpndistrict with initial version 0.1.0
Package: jpndistrict
Type: Package
Title: Create Japanese Administration Area and Office Maps
Version: 0.1.0
Authors@R: c(person(given = "Shinya", family = "Uryu", email = "suika1127@gmail.com", role = c("aut", "cre")))
Maintainer: Shinya Uryu <suika1127@gmail.com>
Description: Utilizing the data that Japanese administration area provided by the National Land Numerical Information download service (<http://nlftp.mlit.go.jp/ksj/index.html>).
Depends: R (>= 3.1.0)
Imports: dplyr, geojsonio, ggghost, ggplot2, ggthemes, leaflet, magrittr, miniUI, readr, rgeos, rmapshaper, shiny (>= 0.13), sp, spdplyr, stringi
Suggests: devtools, jpmesh, knitr, rmarkdown, rvest, plotly, purrr, testthat, tidyr
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
URL: https://github.com/uribo/jpndistrict
BugReports: https://github.com/uribo/jpndistrict/issues
NeedsCompilation: no
Packaged: 2016-12-02 12:45:39 UTC; uri
Author: Shinya Uryu [aut, cre]
Repository: CRAN
Date/Publication: 2016-12-03 01:32:53

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New package yuimaGUI with initial version 0.9.5
Package: yuimaGUI
Type: Package
Title: A Graphical User Interface for the 'yuima' Package
Version: 0.9.5
Author: YUIMA Project Team
Maintainer: Emanuele Guidotti <emanuele.guidotti@studenti.unimi.it>
Description: Provides a graphical user interface for the 'yuima' package.
License: GPL-2
Depends: R(>= 3.0.0)
Imports: DT (>= 0.2), shinyjs, shiny, shinydashboard, shinyBS, yuima, quantmod, sde, ggplot2
NeedsCompilation: no
Packaged: 2016-12-02 23:13:02 UTC; Emanuele
Repository: CRAN
Date/Publication: 2016-12-03 01:09:16

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New package ggiraphExtra with initial version 0.1.0
Package: ggiraphExtra
Type: Package
Title: Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph'
Version: 0.1.0
Authors@R: person("Keon-Woong", "Moon", email = "cardiomoon@gmail.com", role = c("aut", "cre"))
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
URL: https://github.com/cardiomoon/ggiraphExtra
Depends: R (>= 2.10)
Imports: ggplot2 (>= 2.2.0), ggiraph (>= 0.3.2), scales, reshape2, plyr, mycor, XML, grid, mgcv, mapproj, moonBook
Suggests: TH.data, maps, gcookbook, knitr, rmarkdown, testthat
Description: Collection of functions to enhance 'ggplot2' and 'ggiraph'. Provides functions for exploratory plots. All plot can be a 'static' plot or an 'interactive' plot using 'ggiraph'.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-02 23:40:11 UTC; cardiomoon
Author: Keon-Woong Moon [aut, cre]
Repository: CRAN
Date/Publication: 2016-12-03 01:11:47

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New package EFAutilities with initial version 0.1.0
Package: EFAutilities
Type: Package
Title: Utility Functions for Exploratory Factor Analysis
Version: 0.1.0
Date: 2016-11-27
Author: Guangjian Zhang, Ge Jiang, Minami Hattori, Lauren Trichtinger
Maintainer: Guangjian Zhang <gzhang3@nd.edu>
Depends: R (>= 2.10)
Description: A number of utility function for exploratory factor analysis are included in this package. In particular, it computes standard errors for parameter estimates and factor correlations under a variety of conditions.
License: GPL-2
LazyLoad: yes
Imports: GPArotation, mvtnorm
Packaged: 2016-12-02 21:54:30 UTC; ltrichti
RoxygenNote: 5.0.1
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-12-03 01:11:01

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New package BNPMIXcluster with initial version 0.1.0
Package: BNPMIXcluster
Type: Package
Title: Bayesian Nonparametric Model for Clustering with Mixed Scale Variables
Version: 0.1.0
Authors@R: c(person("Christian", "Carmona", role = c("aut", "cre"), email = "carmona@stats.ox.ac.uk"), person("Luis", "Nieto-Barajas", role = "aut", email = " lnieto@itam.mx"), person("Antonio", "Canale", role = "ctb", email = "antonio.canale@unito.it") )
Description: Bayesian nonparametric approach for clustering that is capable to combine different types of variables (continuous, ordinal and nominal) and also accommodates for different sampling probabilities in a complex survey design. The model is based on a location mixture model with a Poisson-Dirichlet process prior on the location parameters of the associated latent variables. The package performs the clustering model described in Carmona, C., Nieto-Barajas, L. E., Canale, A. (2016) <http://arxiv.org/abs/1612.00083>.
License: GPL
LazyData: TRUE
Depends: R (>= 2.10)
Imports: matrixcalc, truncnorm, mvtnorm, plyr, MASS
RoxygenNote: 5.0.1
Suggests: scatterplot3d
NeedsCompilation: no
Packaged: 2016-12-02 11:54:42 UTC; Chris
Author: Christian Carmona [aut, cre], Luis Nieto-Barajas [aut], Antonio Canale [ctb]
Maintainer: Christian Carmona <carmona@stats.ox.ac.uk>
Repository: CRAN
Date/Publication: 2016-12-03 01:26:20

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New package AMModels with initial version 0.1
Package: AMModels
Type: Package
Title: Adaptive Management Model Manager
Version: 0.1
Date: 2016-12-01
Author: Therese Donovan <tdonovan@uvm.edu>, Jon Katz <jonkatz4@gmail.com>
Maintainer: Jon Katz <jonkatz4@gmail.com>
Description: Helps enable adaptive management by codifying knowledge in the form of models generated from numerous analyses and data sets. Facilitates this process by storing all models and data sets in a single object that can be updated and saved, thus tracking changes in knowledge through time. A shiny application called AM Model Manager (modelMgr()) enables the use of these functions via a GUI.
License: GPL-3
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at http://www.usgs.gov/visual-id/ credit_usgs.html#copyright. This software is in the public domain because it contains materials that originally came from the U.S. Geological Survey, an agency of the United States Department of Interior. Although this software program has been used by the U.S. Geological Survey (USGS), no warranty, expressed or implied, is made by the USGS or the U.S. Government as to the accuracy and functioning of the program and related program material nor shall the fact of distribution constitute any such warranty, and no responsibility is assumed by the USGS in connection therewith. This software is provided "AS IS."
Encoding: UTF-8
Imports: methods
Suggests: shiny, shinyBS, knitr, unmarked, AICcmodavg
RoxygenNote: 5.0.1
Collate: 'AMModels-package.R' 'amData.R' 'amModel.R' 'amModelLib.R' 'classes.R' 'getAMModelLib.R' 'getters.R' 'insertAMModelLib.R' 'ls.R' 'metaSummary.R' 'methods-amModel.R' 'methods-amModelLib.R' 'modelMgr.R' 'rmModelsData.R' 'simCovariate.R'
NeedsCompilation: no
Packaged: 2016-12-02 17:19:46 UTC; jon
Repository: CRAN
Date/Publication: 2016-12-03 01:09:17

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New package bea.R with initial version 1.0.0
Package: bea.R
Title: Bureau of Economic Analysis API
Version: 1.0.0
Authors@R: c(person("Andrea", "Julca", role = c("aut", "cre"), email = c("Andrea.Julca@bea.gov")), person("Jeff", "Chen", role = "ctb"), person("Walt", "Kampas", role = "ctb"))
Author: Andrea Julca [aut, cre], Jeff Chen [ctb], Walt Kampas [ctb]
Depends: R (>= 3.2.1), data.table
Imports: httr, DT, shiny, jsonlite, googleVis, shinydashboard, ggplot2, stringr, chron, gtable, scales, htmltools, httpuv, xtable, stringi, magrittr, htmlwidgets, Rcpp, munsell, colorspace, plyr, yaml
Description: Provides an R interface for the Bureau of Economic Analysis (BEA) API (see <http://www.bea.gov/API/bea_web_service_api_user_guide.htm> for more information) that serves two core purposes - 1. To Extract/Transform/Load data [beaGet()] from the BEA API as R-friendly formats in the user's work space [transformation done by default in beaGet() can be modified using optional parameters; see, too, bea2List(), bea2Tab()]. 2. To enable the search of descriptive meta data [beaSearch()]. Other features of the library exist mainly as intermediate methods or are in early stages of development. Important Note - You must have an API key to use this library. Register for a key at <http://www.bea.gov/API/signup/index.cfm> .
URL: https://github.com/us-bea/beaR
License: CC0
LazyData: no
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-02 21:56:55 UTC; ODACJ1
Maintainer: Andrea Julca <Andrea.Julca@bea.gov>
Repository: CRAN
Date/Publication: 2016-12-02 23:20:28

More information about bea.R at CRAN
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New package vkR with initial version 0.1
Package: vkR
Type: Package
Title: Access to VK API via R
Description: Provides an interface to the VK API <https://vk.com/dev/methods>. VK <https://vk.com/> is the largest European online social networking service, based in Russia.
Version: 0.1
Date: 2016-12-01
Authors@R: c( person("Dmitriy", "Sorokin", role = c("aut", "cre"), email = "dementiy@yandex.ru"), person("Anton", "Antonov", role = "ctb", email = "tonytonov@gmail.com"))
Maintainer: Dmitriy Sorokin <dementiy@yandex.ru>
URL: https://github.com/Dementiy/vkR
BugReports: https://github.com/Dementiy/vkR/issues
License: GPL-3
Encoding: UTF-8
Depends: R (>= 3.0.0)
Imports: graphics, httr, jsonlite, stats, utils, XML
Suggests: stringr, tm, plyr, dplyr, reshape2, jpeg, igraph, rgexf, httpuv
RoxygenNote: 5.0.1
Collate: 'auth.R' 'database.R' 'friends.R' 'groups.R' 'igraph_gefx_exporter.R' 'likes.R' 'messages.R' 'network.R' 'queries.R' 'status.R' 'search.R' 'users.R' 'utils.R' 'wall.R' 'vkR.R'
NeedsCompilation: no
Packaged: 2016-12-01 23:45:48 UTC; dementiy
Author: Dmitriy Sorokin [aut, cre], Anton Antonov [ctb]
Repository: CRAN
Date/Publication: 2016-12-02 10:46:29

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New package scatterpie with initial version 0.0.5
Package: scatterpie
Title: Scatterpie Plot
Version: 0.0.5
Authors@R: person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre"))
Description: Creates scatterpie plots, especially useful for plotting pies on a map.
Depends: R (>= 3.3.0)
Imports: ggforce, ggplot2, tidyr, utils
Suggests: knitr, prettydoc, maps
VignetteBuilder: knitr
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-02 01:44:24 UTC; guangchuangyu
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-02 10:46:28

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New package FactoRizationMachines with initial version 0.1
Package: FactoRizationMachines
Type: Package
Title: Machine Learning with Higher-Order Factorization Machines
Version: 0.1
Date: 2016-12-01
Author: Julian Knoll
Maintainer: Julian Knoll <julian.knoll@th-nuernberg.de>
Description: Implementation of three machine learning approaches: Support Vector Machines (SVM) with a linear kernel, second-order Factorization Machines (FM), and higher-order Factorization Machines (HoFM).
License: CC BY-NC-ND 4.0
Imports: Rcpp (>= 0.12.1), methods, Matrix
LinkingTo: Rcpp
Suggests: MASS
NeedsCompilation: yes
Packaged: 2016-12-01 21:23:31 UTC; Administrator
Repository: CRAN
Date/Publication: 2016-12-02 10:46:20

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New package ClimDown with initial version 1.0.2
Package: ClimDown
Version: 1.0.2
Date: 2016-12-01
Title: Climate Downscaling Library for Daily Climate Model Output
Authors@R: c(person("Alex Cannon", role = "aut", email = "acannon@uvic.ca"), person("James Hiebert", role = c("aut", "cre"), email = "hiebert@uvic.ca"), person("Arelia Werner", role = "aut", email = "wernera@uvic.ca"), person("Steven Sobie", role = "aut", email = "ssobie@uvic.ca"))
Imports: PCICt, udunits2, ncdf4, fields, foreach, seas, abind, stats
Suggests: RUnit
Encoding: UTF-8
Description: A suite of routines for downscaling coarse scale global climate model (GCM) output to a fine spatial resolution. Includes Bias-Corrected Spatial Downscaling (BCDS), Constructed Analogues (CA), Climate Imprint (CI), and Bias Correction/Constructed Analogues with Quantile mapping reordering (BCCAQ). Developed by the the Pacific Climate Impacts Consortium (PCIC), Victoria, British Columbia, Canada.
License: GPL-3
URL: https://www.r-project.org
LazyData: yes
BugReports: https://github.com/pacificclimate/ClimDown
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-02 00:54:49 UTC; james
Author: Alex Cannon [aut], James Hiebert [aut, cre], Arelia Werner [aut], Steven Sobie [aut]
Maintainer: James Hiebert <hiebert@uvic.ca>
Repository: CRAN
Date/Publication: 2016-12-02 10:46:19

More information about ClimDown at CRAN
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Thu, 01 Dec 2016

New package prioritizr with initial version 0.1.2
Package: prioritizr
Type: Package
Title: Systematic Conservation Prioritization in R
Version: 0.1.2
Date: 2016-11-15
Authors@R: person("Matthew", "Strimas-Mackey", email="mstrimas@gmail.com", role = c("aut", "cre"))
Description: Solve systematic reserve design problems using integer programming techniques. To solve problems most efficiently users can install three optional packages not available on CRAN: the 'gurobi' optimizer (available from <http://www.gurobi.com/>) and the conservation prioritization package 'marxan' (available from <https://github.com/jeffreyhanson/marxan>).
Depends: R (>= 3.1.2)
License: MIT + file LICENSE
LazyData: TRUE
RoxygenNote: 5.0.1
Imports: assertthat, sp, raster, slam, dplyr, gstat, rgeos, rasterVis, methods, tidyr
Suggests: marxan, gurobi, lpsymphony, Rsymphony, knitr, rmarkdown, glpkAPI, testthat
URL: https://github.com/mstrimas/prioritizr
BugReports: https://github.com/mstrimas/prioritizr/issues
VignetteBuilder: knitr
Maintainer: Matthew Strimas-Mackey <mstrimas@gmail.com>
NeedsCompilation: no
Packaged: 2016-12-01 19:15:28 UTC; matt
Author: Matthew Strimas-Mackey [aut, cre]
Repository: CRAN
Date/Publication: 2016-12-01 21:32:43

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New package imagine with initial version 1.1.0
Package: imagine
Type: Package
Title: Imaging Engine, Tools for Application of Image Filters to Data Matrices
Version: 1.1.0
Date: 2016-09-24
URL: https://github.com/LuisLauM/imagine
BugReports: https://github.com/LuisLauM/imagine/issues
Authors@R: c(person("Wencheng", "Lau-Medrano", role = c("aut", "cre"), email = "luis.laum@gmail.com"))
Maintainer: Wencheng Lau-Medrano <luis.laum@gmail.com>
Description: Provides fast application of image filters to data matrices, using R and C++ algorithms.
License: GPL (>= 2)
LazyData: TRUE
Depends: R (>= 3.2.0)
Imports: Rcpp
LinkingTo: Rcpp
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-12-01 19:43:51 UTC; AFDERP
Author: Wencheng Lau-Medrano [aut, cre]
Repository: CRAN
Date/Publication: 2016-12-01 21:32:42

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New package gbs2ploidy with initial version 1.0
Package: gbs2ploidy
Type: Package
Title: Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data
Version: 1.0
Date: 2016-12-01
Author: Zachariah Gompert
Maintainer: Zachariah Gompert <zach.gompert@usu.edu>
Depends: R (>= 2.10), MASS, rjags
Description: Functions for inference of ploidy from (Genotyping-by-sequencing) GBS data, including a function to infer allelic ratios and allelic proportions in a Bayesian framework.
License: GPL-3
NeedsCompilation: no
Packaged: 2016-12-01 19:46:38 UTC; zgompert
Repository: CRAN
Date/Publication: 2016-12-01 21:32:40

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New package freqdist with initial version 0.1
Package: freqdist
Type: Package
Title: Frequency Distribution
Version: 0.1
Author: Thomas Feldman <tfeldma@siue.edu> and Kenneth W. Moffett <kmoffet@siue.edu>
Maintainer: Kenneth W. Moffett <kmoffet@siue.edu>
Description: Generates a frequency distribution. The frequency distribution includes raw frequencies, percentages in each category, and cumulative frequencies. The frequency distribution can be stored as a data frame.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-01 14:43:24 UTC; taxns
Repository: CRAN
Date/Publication: 2016-12-01 22:33:06

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New package FixSeqMTP with initial version 0.1.0
Package: FixSeqMTP
Type: Package
Title: Fixed Sequence Multiple Testing Procedures
Version: 0.1.0
Suggests: multxpert, multcomp, MHTdiscrete
Author: Yalin Zhu, Wenge Guo
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>
BugReports: https://github.com/allenzhuaz/FixSeqMTP/issues
Description: Generalized Fixed Sequence Multiple Testing Procedures (g-FSMTPs) are used to test a sequence of pre- ordered hypotheses. The proposed three Family-wise Error Rate (FWER) controlling g-FSMTPs utilize numbers of rejections and acceptances, all the procedures are designed under arbitrary dependence. The proposed two False Discovery Rate (FDR) controlling g-FSMTPs allows more but a given number of acceptances (k>=1), the procedures are designed for arbitrary dependence and independence. The main functions for each proposed g-FSMTPs are designed to calculate adjusted p-values and critical values, respectively. For users' convenience, the output results also include the option of decision rules for convenience.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: TRUE
NeedsCompilation: no
Packaged: 2016-12-01 16:49:46 UTC; kaijingzhang
Repository: CRAN
Date/Publication: 2016-12-01 19:44:22

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New package deconvolveR with initial version 1.0-3
Package: deconvolveR
Title: Empirical Bayes Estimation Strategies
Version: 1.0-3
VignetteBuilder: knitr
Suggests: cowplot, ggplot2, knitr, rmarkdown
Authors@R: c(person("Bradley", "Efron", role=c("aut"), email = "brad@stat.stanford.edu"), person("Balasubramanian", "Narasimhan", role=c("aut", "cre"), email = "naras@stat.Stanford.EDU"))
Description: Empirical Bayes methods for learning prior distributions from data. An unknown prior distribution (g) has yielded (unobservable) parameters, each of which produces a data point from a parametric exponential family (f). The goal is to estimate the unknown prior ("g-modeling") by deconvolution and Empirical Bayes methods.
URL: http://github.com/bnaras/deconvolveR
BugReports: http://github.com/bnaras/deconvolveR/issues
Depends: R (>= 3.0)
License: GPL (>= 2)
LazyData: true
Imports: splines, stats
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-01 15:05:17 UTC; naras
Author: Bradley Efron [aut], Balasubramanian Narasimhan [aut, cre]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Repository: CRAN
Date/Publication: 2016-12-01 19:44:32

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New package rxSeq with initial version 0.99.3
Package: rxSeq
Type: Package
Title: Combined Total and Allele Specific Reads Sequencing Study
Version: 0.99.3
Date: 2016-11-30
Authors@R: c(person("Vasyl Zhabotynsky", role = c("aut", "cre"), email = "vasyl@unc.edu"), person("Wei Sun", role = "aut"), person("Fei Zou", role = "aut"))
Author: Vasyl Zhabotynsky [aut, cre], Wei Sun [aut], Fei Zou [aut]
Maintainer: Vasyl Zhabotynsky <vasyl@unc.edu>
Description: Analysis of combined total and allele specific reads from the reciprocal cross study with RNA-seq data.
Depends: MASS,VGAM,numDeriv
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2016-12-01 09:33:06 UTC; zhabotyn
Repository: CRAN
Date/Publication: 2016-12-01 12:45:14

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New package RWildbook with initial version 0.9
Package: RWildbook
Type: Package
Title: Interface for the 'Wildbook' Wildlife Data Management Framework
Version: 0.9
Date: 2016-11-26
Author: c(person("Simon", "Bonner", email = "sbonner6@uwo.ca", role = c("aut")),person("Xinxin", "Huang", email = "xhuan63@uwo.ca", role = c("aut","cre")))
Maintainer: Simon Bonner <sbonner6@uwo.ca>
Description: Provides an R interface with the 'Wildbook' mark-recapture ecological database framework. It helps users to pull data from the 'Wildbook' framework and format data for further analysis with mark-recapture applications like 'Program MARK' (which can be accessed via the 'RMark' package in 'R'). Further information on the 'Wildbook' framework is available at: <http://www.wildbook.org/doku.php>.
License: GPL (>= 2)
Depends: R (>= 3.0.0), jsonlite, data.table, utils
Imports: marked
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-01 03:33:50 UTC; sbonner
Repository: CRAN
Date/Publication: 2016-12-01 08:28:18

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New package cstab with initial version 0.2
Package: cstab
Type: Package
Title: Selection of Number of Clusters via Normalized Clustering Instability
Version: 0.2
Date: 2016-11-30
Author: Jonas Haslbeck, Dirk U. Wulff
Maintainer: Jonas Haslbeck <jonas.haslbeck@gmail.com>
Description: Selection of the number of clusters in cluster analysis using stability methods.
BugReports: https://github.com/jmbh/cstab/issues
License: GPL (>= 2)
Depends: R (>= 3.1.0), Rcpp (>= 0.11.4)
Imports: cluster, fastcluster,
LinkingTo: Rcpp
RoxygenNote: 5.0.1
LazyData: true
NeedsCompilation: yes
Packaged: 2016-11-30 20:37:01 UTC; jmb
Repository: CRAN
Date/Publication: 2016-12-01 08:28:29

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Wed, 30 Nov 2016

New package repeated with initial version 1.1.0
Package: repeated
Version: 1.1.0
Title: Non-Normal Repeated Measurements Models
Authors@R: c( person("Bruce", "Swihart", email="bruce.swihart@gmail.com", role=c("cre", "aut")), person("Jim" , "Lindsey", email="jlindsey@gen.unimaas.nl", role="aut", comment="Jim created this package, Bruce is maintaining the CRAN version"), person("T.R.", "Ten Have", role=c("ctb", "cph"), comment="Wrote Logit_bin_nest.f90 (in binnest.f)."), person("Richard", "Cook", role=c("ctb", "cph"), comment="Wrote calcs.c, calcs.h, calcs1.c, calcs1.h, calcs2.c, calcs2.h, calcs3.c, calcs3.h, calcs4.c, calcs4.h; defs.h; gaps.c, gaps.h."), person("Iain", "MacDonald", role=c("ctb", "cph"), comment="Wrote chidden.f, cphidden.f, hidden.f."), person("Walter", "Zucchini", role=c("ctb", "cph"), comment="Wrote chidden.f, cphidden.f, hidden.f."), person("Burton", "Garbow", role=c("ctb", "cph"), comment="Wrote eigen.f."), person("Euginia", "Zharichenko", role=c("ctb", "cph"), comment="Wrote logitord.f.") )
Depends: R (>= 1.4), rmutil
Description: Various functions to fit models for non-normal repeated measurements.
License: GPL-2
URL: http://www.commanster.eu/rcode.html
BugReports: https:/github.com/swihart/repeated/issues
Encoding: UTF-8
LazyData: true
LazyLoad: true
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-11-30 16:25:55 UTC; swihartbj
Author: Bruce Swihart [cre, aut], Jim Lindsey [aut] (Jim created this package, Bruce is maintaining the CRAN version), T.R. Ten Have [ctb, cph] (Wrote Logit_bin_nest.f90 (in binnest.f).), Richard Cook [ctb, cph] (Wrote calcs.c, calcs.h, calcs1.c, calcs1.h, calcs2.c, calcs2.h, calcs3.c, calcs3.h, calcs4.c, calcs4.h; defs.h; gaps.c, gaps.h.), Iain MacDonald [ctb, cph] (Wrote chidden.f, cphidden.f, hidden.f.), Walter Zucchini [ctb, cph] (Wrote chidden.f, cphidden.f, hidden.f.), Burton Garbow [ctb, cph] (Wrote eigen.f.), Euginia Zharichenko [ctb, cph] (Wrote logitord.f.)
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Repository: CRAN
Date/Publication: 2016-11-30 18:31:24

More information about repeated at CRAN
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New package ramcmc with initial version 0.1.0
Package: ramcmc
Title: Robust Adaptive Metropolis Algorithm
Version: 0.1.0
Date: 2016-11-30
Author: Jouni Helske
Maintainer: Jouni Helske <jouni.helske@jyu.fi>
Description: Function for adapting the shape of the random walk Metropolis proposal as specified by robust adaptive Metropolis algorithm by Vihola (2012) <DOI:10.1007/s11222-011-9269-5>. Package also includes fast functions for rank-one Cholesky update and downdate. These functions can be used directly from R or the corresponding C++ header files can be easily linked to other R packages.
License: GPL (>= 2)
BugReports: https://github.com/helske/ramcmc/issues
Suggests: testthat, knitr
Imports: Rcpp (>= 0.12.8)
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-11-30 14:34:03 UTC; OMISTAJA
Repository: CRAN
Date/Publication: 2016-11-30 16:28:53

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New package camsRad with initial version 0.3.0
Package: camsRad
Type: Package
Title: Client for CAMS Radiation Service
Version: 0.3.0
Authors@R: person("Lukas", "Lundstrom", email = "lukas.rokka@gmail.com", role = c("aut", "cre"))
Maintainer: Lukas Lundstrom <lukas.rokka@gmail.com>
Description: Copernicus Atmosphere Monitoring Service (CAMS) radiations service provides time series of global, direct, and diffuse irradiations on horizontal surface, and direct irradiation on normal plane for the actual weather conditions as well as for clear-sky conditions. The geographical coverage is the field-of-view of the Meteosat satellite, roughly speaking Europe, Africa, Atlantic Ocean, Middle East. The time coverage of data is from 2004-02-01 up to 2 days ago. Data are available with a time step ranging from 15 min to 1 month. For license terms and to create an account, please see <http://www.soda-pro.com/web-services/radiation/cams-radiation-service>.
License: MIT + file LICENSE
Depends: R (>= 3.1.0)
Imports: httr (>= 1.2.1), xml2 (>= 1.0.0)
Suggests: ncdf4, roxygen2, knitr, testthat, rmarkdown
URL: https://github.com/ropenscilabs/camsRad
BugReports: https://github.com/ropenscilabs/camsRad/issues
LazyData: TRUE
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-11-30 14:03:24 UTC; luklun
Author: Lukas Lundstrom [aut, cre]
Repository: CRAN
Date/Publication: 2016-11-30 16:28:49

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New package BiBitR with initial version 0.1.0
Package: BiBitR
Type: Package
Title: R Wrapper for Java Implementation of BiBit
Version: 0.1.0
Date: 2016-11-30
Author: De Troyer Ewoud
Maintainer: De Troyer Ewoud <ewoud.detroyer@uhasselt.be>
Description: A simple R wrapper for the Java BiBit algorithm from "A biclustering algorithm for extracting bit-patterns from binary datasets" from Domingo et al. (2011) <DOI:10.1093/bioinformatics/btr464>. An adaption for the BiBit algorithm which allows noise in the biclusters is also included.
License: GPL-3
Imports: foreign,methods,utils, biclust
RoxygenNote: 5.0.1
SystemRequirements: Java
NeedsCompilation: no
Packaged: 2016-11-30 14:43:21 UTC; lucp8394
Repository: CRAN
Date/Publication: 2016-11-30 16:28:44

More information about BiBitR at CRAN
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New package nomogramEx with initial version 1.0
Package: nomogramEx
Type: Package
Title: Extract Equations from a Nomogram
Version: 1.0
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Description: A nomogram can not be easily applied, because it is difficult to calculate the points or even the survival probability. The package, including a function of nomogramEx(), is to extract the polynomial equations to calculate the points of each variable, and the survival probability corresponding to the total points.
License: GPL-3
Depends: R (>= 3.3.2)
Imports: pracma, rms
LazyData: TRUE
NeedsCompilation: no
Packaged: 2016-11-30 12:26:04 UTC; dzc
Repository: CRAN
Date/Publication: 2016-11-30 14:55:23

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New package enviGCMS with initial version 0.1.1
Package: enviGCMS
Type: Package
Title: GC-MS Data Analysis for Environmental Science
Version: 0.1.1
Date: 2016-11-28
Authors@R: person("Miao","YU", email = "yufreecas@gmail.com", role = c("aut", "cre"))
Maintainer: Miao YU <yufreecas@gmail.com>
Description: Gas Chromatography-Mass Spectrometer(GC-MS) Data Analysis for Environmental Science. This package covered topics such as raw data process, molecular isotope ratio, matrix effects, etc. in environmental analysis.
URL: https://github.com/yufree/enviGCMS
License: GPL-2
Encoding: UTF-8
LazyData: true
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews:
Imports: xcms, rcdk, mixtools
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-11-30 13:12:39 UTC; yufree
Author: Miao YU [aut, cre]
Repository: CRAN
Date/Publication: 2016-11-30 14:55:19

More information about enviGCMS at CRAN
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New package ggguitar with initial version 0.1.0
Package: ggguitar
Type: Package
Title: Utilities for Creating Guitar Tablature
Version: 0.1.0
Authors@R: person("Casimir", "Saternos", email="cas.saternos@gmail.com", role = c('aut','cre'))
Maintainer: Casimir Saternos <cas.saternos@gmail.com>
Description: Utilities for Creating Guitar Tablature using tidyverse packages.
License: MIT + file LICENSE
LazyData: TRUE
BugReports: https://github.com/ezgraphs/ggguitar/issues
Imports: dplyr, ggplot2, gridExtra, readr, tibble
Suggests: testthat, knitr, rmarkdown
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-11-29 18:03:25 UTC; cs
Author: Casimir Saternos [aut, cre]
Repository: CRAN
Date/Publication: 2016-11-30 09:10:56

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Tue, 29 Nov 2016

New package testassay with initial version 0.1.0
Package: testassay
Type: Package
Title: A Hypothesis Testing Framework for Validating an Assay for Precision
Version: 0.1.0
Author: Michael C Sachs and Michael P Fay
Maintainer: Michael C Sachs <sachsmc@gmail.com>
Description: A common way of validating a biological assay for is through a procedure, where m levels of an analyte are measured with n replicates at each level, and if all m estimates of the coefficient of variation (CV) are less than some prespecified level, then the assay is declared validated for precision within the range of the m analyte levels. Two limitations of this procedure are: there is no clear statistical statement of precision upon passing, and it is unclear how to modify the procedure for assays with constant standard deviation. We provide tools to convert such a procedure into a set of m hypothesis tests. This reframing motivates the m:n:q procedure, which upon completion delivers a 100q% upper confidence limit on the CV. Additionally, for a post-validation assay output of y, the method gives an ``effective standard deviation interval'' of log(y) plus or minus r, which is a 68% confidence interval on log(mu), where mu is the expected value of the assay output for that sample. Further, the m:n:q procedure can be straightforwardly applied to constant standard deviation assays. We illustrate these tools by applying them to a growth inhibition assay.
License: MIT + file LICENSE
LazyData: TRUE
Depends: R (>= 2.10)
Suggests: knitr, rmarkdown, ggplot2, dplyr
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-11-29 14:31:42 UTC; micsac
Repository: CRAN
Date/Publication: 2016-11-29 18:10:38

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New package Przewodnik with initial version 0.16.12
Package: Przewodnik
Title: Datasets and Functions Used in the Book 'Przewodnik po Pakiecie R'
Version: 0.16.12
Authors@R: person("Przemyslaw", "Biecek", role = c("aut", "cre"), email = "przemyslaw.biecek@gmail.com")
Description: Data sets and functions used in the polish book "Przewodnik po pakiecie R" (The Hitchhiker's Guide to the R). See more at <http://biecek.pl/R>. Among others you will find here data about housing prices, cancer patients, running times and many others.
Depends: R (>= 3.0.0), PogromcyDanych, PBImisc
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-11-29 08:59:01 UTC; pbiecek
Author: Przemyslaw Biecek [aut, cre]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Repository: CRAN
Date/Publication: 2016-11-29 12:43:44

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New package effectFusion with initial version 1.0
Package: effectFusion
Title: Bayesian Effect Fusion for Categorical Predictors
Version: 1.0
Date: 2016-11-21
Author: Daniela Pauger [aut, cre], Helga Wagner [aut], Gertraud Malsiner-Walli [aut]
Maintainer: Daniela Pauger <daniela.pauger@jku.at>
Description: Variable selection and Bayesian effect fusion for categorical predictors in linear regression models. Effect fusion aims at the question which categories have a similar effect on the response and therefore can be fused to obtain a sparser representation of the model. Effect fusion and variable selection can be obtained either with a prior that has an interpretation as spike and slab prior on the level effect differences or with a sparse finite mixture prior on the level effects. The regression coefficients are estimated with a flat uninformative prior after model selection or model averaged. For posterior inference, an MCMC sampling scheme is used that involves only Gibbs sampling steps.
Depends: R (>= 3.3.1)
License: GPL-3
Imports: Matrix, MASS, bayesm, cluster, ggplot2, utils, stats
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-11-29 08:46:14 UTC; AK115491
Repository: CRAN
Date/Publication: 2016-11-29 12:43:49

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New package tsdisagg2 with initial version 0.1.0
Package: tsdisagg2
Type: Package
Title: Time Series Disaggregation
Version: 0.1.0
Author: Jorge Vieira <jorgealexandrevieira@gmail.com>
Maintainer: Jorge Vieira <jorgealexandrevieira@gmail.com>
Description: Disaggregates low frequency time series data to higher frequency series. Implements the following methods for temporal disaggregation: Boot, Feibes and Lisman (1967) <DOI:10.2307/2985238>, Chow and Lin (1971) <DOI:10.2307/1928739>, Fernandez (1981) <DOI:10.2307/1924371> and Litterman (1983) <DOI:10.2307/1391858>.
Depends: R (>= 3.1)
License: GPL (>= 2)
RoxygenNote: 5.0.1
Suggests: R.rsp
VignetteBuilder: R.rsp
NeedsCompilation: no
Packaged: 2016-11-28 19:46:19 UTC; Jorge
Repository: CRAN
Date/Publication: 2016-11-29 08:10:07

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New package subprocess with initial version 0.7.4
Package: subprocess
Type: Package
Title: Manage Sub-Processes in R
Version: 0.7.4
Authors@R: person("Lukasz", "Bartnik", email = "l.bartnik@gmail.com", role = c("aut", "cre"))
Description: Create and handle multiple sub-processes in R, exchange data over standard input and output streams, control their life cycle.
License: MIT + file LICENSE
URL: https://github.com/lbartnik/subprocess
BugReports: https://github.com/lbartnik/subprocess/issues
Suggests: mockery, testthat, knitr, rmarkdown (>= 1.0)
Collate: 'package.R' 'readwrite.R' 'signals.R' 'subprocess.R' 'utils.R'
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-11-28 17:43:56 UTC; lukasz
Author: Lukasz Bartnik [aut, cre]
Maintainer: Lukasz Bartnik <l.bartnik@gmail.com>
Repository: CRAN
Date/Publication: 2016-11-29 08:10:06

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New package listdtr with initial version 1.0
Package: listdtr
Type: Package
Title: List-Based Rules for Dynamic Treatment Regimes
Version: 1.0
Date: 2016-11-20
Author: Yichi Zhang
Maintainer: Yichi Zhang <yzhang52@ncsu.edu>
Description: Construction of list-based rules, i.e. a list of if-then clauses, to estimate the optimal dynamic treatment regime.
License: GPL (>= 2)
Depends: ggplot2, grid
NeedsCompilation: yes
Packaged: 2016-11-28 23:30:08 UTC; Yichi
Repository: CRAN
Date/Publication: 2016-11-29 08:10:03

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New package fastHorseshoe with initial version 0.1.0
Package: fastHorseshoe
Type: Package
Title: The Elliptical Slice Sampler for Bayesian Horseshoe Regression
Version: 0.1.0
Date: 2016-11-22
Author: P. Richard Hahn, Jingyu He and Hedibert Lopes
Maintainer: Jingyu He <jingyu.he@chicagobooth.edu>
Description: The elliptical slice sampler for Bayesian shrinkage linear regression, such as horseshoe, double-exponential and user specific priors.
License: LGPL (>= 2)
Imports: Rcpp (>= 0.12.7)
SystemRequirements: A C++11 compiler.
Depends: R (>= 2.10), lars(>= 1.2)
URL: http://jingyuhe.com/software.html
NeedsCompilation: yes
LinkingTo: Rcpp, RcppArmadillo
Packaged: 2016-11-28 17:21:47 UTC; jingyu
Repository: CRAN
Date/Publication: 2016-11-29 08:10:00

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New package datapasta with initial version 1.0.0
Package: datapasta
Title: RStudio Addins for Data Copy-Pasta
Version: 1.0.0
Authors@R: person("Miles", "McBain", email = "miles.mcbain@gmail.com", role = c("aut", "cre"))
Description: Three RStudio addins to make copy-pasting vectors and tables into source painless.
Depends: R (>= 3.3.0)
Suggests: tibble (>= 1.2), testthat, knitr, rmarkdown
Imports: readr (>= 1.0.0), clipr (>= 0.3.0), rstudioapi (>= 0.6)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-11-29 02:17:23 UTC; mcbainm
Author: Miles McBain [aut, cre]
Maintainer: Miles McBain <miles.mcbain@gmail.com>
Repository: CRAN
Date/Publication: 2016-11-29 08:09:57

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Mon, 28 Nov 2016

New package rtrim with initial version 1.0.1
Package: rtrim
Author: Patrick Bogaart, Mark van der Loo, and Jeroen Pannekoek
Maintainer: Adriaan Gmelig Meyling <rtrim@cbs.nl>
License: EUPL
Title: Trends and Indices for Monitoring Data
LazyData: no
Type: Package
LazyLoad: yes
Description: The TRIM model is widely used for estimating growth and decline of animal populations based on (possibly sparsely available) count data. The current package is a reimplementation of the original TRIM software developed at Statistics Netherlands by Jeroen Pannekoek. See <https://www.cbs.nl/en-gb/society/nature-and-environment/indices-and-trends--trim--> for more information about TRIM.
Version: 1.0.1
Imports: methods, utils, stats, graphics, grDevices
URL: https://github.com/markvanderloo/rtrim
BugReports: https://github.com/markvanderloo/rtrim/issues
Date: 2016-11-21
Suggests: testthat, knitr, rmarkdown
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-11-28 12:34:42 UTC; mark
Repository: CRAN
Date/Publication: 2016-11-28 16:54:05

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New package CVD with initial version 1.0.2
Package: CVD
Type: Package
Title: Color Vision Deficiencies
Version: 1.0.2
Encoding: UTF-8
Authors@R: c(person(given = "Jose", family = "Gama", role = c("aut","cre","trl"),email = "rxprtgama@gmail.com"), person(given = "Brian", family = "Foutch", role = "ctb"), person(given = "Mark", family = "Grundland", role = "ctb"), person(given = "Neil", family = "Dodgson", role = "ctb"))
Description: Methods for color vision deficiencies (CVD), to help understanding and mitigating issues with CVDs and to generate tests for diagnosis and interpretation.
License: GPL (>= 3)
Depends: R (>= 2.10)
Enhances: png, gWidgets2, RGtk2
LazyData: yes
Author: Jose Gama [aut, cre, trl], Brian Foutch [ctb], Mark Grundland [ctb], Neil Dodgson [ctb]
Maintainer: Jose Gama <rxprtgama@gmail.com>
Repository: CRAN
Repository/R-Forge/Project: cvd
Repository/R-Forge/Revision: 16
Repository/R-Forge/DateTimeStamp: 2016-11-28 09:01:48
Date/Publication: 2016-11-28 13:23:17
NeedsCompilation: no
Packaged: 2016-11-28 09:06:04 UTC; rforge

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New package esaddle with initial version 0.0.2
Package: esaddle
Type: Package
Title: Extended Empirical Saddlepoint Density Approximation
Version: 0.0.2
Date: 2016-11-25
Author: Matteo Fasiolo and Simon Wood
Maintainer: Matteo Fasiolo <matteo.fasiolo@gmail.com>
Description: Tools for fitting the Extended Empirical Saddlepoint (EES) density.
License: GPL (>= 2)
URL: https://github.com/mfasiolo/esaddle
Imports: Rcpp (>= 0.10.4), compiler, stats, graphics, parallel, plyr, doSNOW, mvnfast
Suggests: knitr, testthat
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-11-25 18:22:16 UTC; teo
Repository: CRAN
Date/Publication: 2016-11-28 13:04:38

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Sun, 27 Nov 2016

New package diffusr with initial version 0.1.0
Package: diffusr
Type: Package
Title: Network Diffusion Algorithms
Version: 0.1.0
Authors@R: person("Simon", "Dirmeier", email = "simon.dirmeier@gmx.de", role = c("aut", "cre"))
Maintainer: Simon Dirmeier <simon.dirmeier@gmx.de>
Description: Implementation of network diffusion algorithms such as insulated heat propagation or Markov random walks. Network diffusion algorithms generally spread information in the form of node weights along the edges of a graph to other nodes. These weights can for example be interpreted as temperature, an initial amount of water, the activation of neurons in the brain, or the location of a random surfer in the internet. The information (node weights) is iteratively propagated to other nodes until a equilibrium state or stop criterion occurs.
URL: https://github.com/dirmeier/diffusr
BugReports: https://github.com/dirmeier/diffusr/issues
License: GPL (>= 3)
LazyData: TRUE
LinkingTo: Rcpp, RcppEigen
Imports: Rcpp
Suggests: knitr, rmarkdown, testthat, lintr, igraph
VignetteBuilder: knitr
RoxygenNote: 5.0.1
SystemRequirements: C++11
NeedsCompilation: yes
Packaged: 2016-11-27 21:46:29 UTC; simon
Author: Simon Dirmeier [aut, cre]
Repository: CRAN
Date/Publication: 2016-11-28 00:33:47

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New package NonCompart with initial version 0.2.3
Package: NonCompart
Version: 0.2.3
Date: 2016-11-28
Title: Noncompartmental Analysis of Pharmacokinetics
Description: Conduct noncompartmental analysis as close as possible to the most widely used commercial pharmacokinetic analysis software, i.e. 'Phoenix(R) WinNonlin(R)' <https://www.certara.com/software/pkpd-modeling-and-simulation/phoenix-winnonlin/>. For more details on noncompartmental analysis, see the reference: Rowland M, Tozer TN. Clinical Pharmacokinetics and Pharmacodynamics - Concepts and Applications. 4e. 2011.
Depends: R (>= 3.0.0)
Author: Kyun-Seop Bae
Maintainer: Kyun-Seop Bae <k@acr.kr>
Copyright: 2016, Kyun-Seop Bae
License: GPL-3
NeedsCompilation: no
LazyLoad: yes
Repository: CRAN
URL: https://cran.r-project.org/package=NonCompart
Packaged: 2016-11-27 16:05:52 UTC; K
Date/Publication: 2016-11-27 18:30:40

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New package mltools with initial version 0.1.0
Package: mltools
Type: Package
Title: Machine Learning Tools
Version: 0.1.0
Author: Ben Gorman
Maintainer: Ben Gorman <bgorman@GormAnalysis.com>
Description: A collection of machine learning helper functions, particularly assisting in the Exploratory Data Analysis phase. Makes heacy use of the 'data.table' package for optimal speed and memory efficiency. Highlights include a versatile bin_data() function, sparsify() for converting a data.table to sparse matrix format with one-hot encoding, fast evaluation metrics, and empirical_cdf() for calculating empirical Multivariate Cumulative Distribution Functions.
License: MIT + file LICENSE
URL: https://github.com/ben519/mltools
BugReports: https://github.com/ben519/mltools/issues
LazyData: TRUE
RoxygenNote: 5.0.1
Imports: data.table(>= 1.9.7), Matrix, methods, stats
NeedsCompilation: no
Packaged: 2016-11-27 16:07:10 UTC; Ben
Repository: CRAN
Date/Publication: 2016-11-27 18:28:27

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New package GeomComb with initial version 1.0
Package: GeomComb
Type: Package
Title: (Geometric) Forecast Combination Methods
Version: 1.0
Depends: R (>= 3.0.2)
Imports: forecast (>= 7.3), ForecastCombinations (>= 1.1), ggplot2 (>= 2.1.0), Matrix (>= 1.2-6), mtsdi (>= 0.3.3), psych (>= 1.6.9)
Suggests: testthat (>= 1.0.2)
Author: Christoph E. Weiss, Gernot R. Roetzer
Maintainer: Christoph E. Weiss <info@ceweiss.com>
Description: Provides eigenvector-based (geometric) forecast combination methods; also includes simple approaches (simple average, median, trimmed and winsorized mean, inverse rank method) and regression-based combination. Tools for data pre-processing are available in order to deal with common problems in forecast combination (missingness, collinearity).
URL: https://github.com/ceweiss/GeomComb
BugReports: https://github.com/ceweiss/GeomComb/issues
License: GPL (>= 2)
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-11-27 14:48:09 UTC; Chris
Repository: CRAN
Date/Publication: 2016-11-27 16:02:26

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Sat, 26 Nov 2016

New package rly with initial version 1.0.3
Package: rly
Type: Package
Title: Lex and Yacc
Version: 1.0.3
Date: 2016-11-26
Authors@R: c(person("Marek", "Jagielski", role = c("aut", "cre", "cph"), email = "marek.jagielski@gmail.com"), person("David M.", " Beazley", role = c("aut", "cph")))
Author: Marek Jagielski [aut, cre, cph], David M. Beazley [aut, cph]
Maintainer: Marek Jagielski <marek.jagielski@gmail.com>
Description: R implementation of the common parsing tools lex and yacc.
License: MIT + file LICENSE
URL: https://github.com/systemincloud/rly
BugReports: https://github.com/systemincloud/rly/issues
Suggests: testthat
Depends: R6, futile.logger
RoxygenNote: 5.0.1
Collate: 'logger.R' 'lex.R' 'yacc.R'
NeedsCompilation: yes
Packaged: 2016-11-26 23:51:16 UTC; marek
Repository: CRAN
Date/Publication: 2016-11-27 02:34:15

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New package stmgui with initial version 0.1.5
Package: stmgui
Type: Package
Title: Shiny Application for Creating STM Models
Version: 0.1.5
Date: 2016-11-15
Author: Dan Zangri
Maintainer: Dan Zangri <dzangri@gmail.com>
Description: Provides an application that acts as a GUI for the 'stm' text processing package.
Depends: stm, markdown, shinyjs, shinythemes, tm
Imports: shiny, shinyBS
LazyData: yes
License: MIT + file LICENSE
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: no
Packaged: 2016-11-26 18:27:16 UTC; dzangri
Repository: CRAN
Date/Publication: 2016-11-27 00:05:00

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New package pcdpca with initial version 0.2.1
Package: pcdpca
Title: Dynamic Principal Components for Periodically Correlated Functional Time Series
Version: 0.2.1
Authors@R: c(person("Lukasz", "Kidzinski", email = "lukasz.kidzinski@stanford.edu", role = c("aut", "cre")), person("Neda", "Jouzdani", email = "neda.jouzdani@colostate.edu", role = c("aut")), person("Piotr", "Kokoszka", email = "piotr.kokoszka@colostate.edu", role = c("aut")))
Description: Method extends multivariate dynamic principal components to periodically correlated multivariate time series.
Depends: R (>= 3.3.1)
Imports: freqdom, fda
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1.9000
NeedsCompilation: no
Packaged: 2016-11-26 04:28:05 UTC; lukasz
Author: Lukasz Kidzinski [aut, cre], Neda Jouzdani [aut], Piotr Kokoszka [aut]
Maintainer: Lukasz Kidzinski <lukasz.kidzinski@stanford.edu>
Repository: CRAN
Date/Publication: 2016-11-27 00:06:38

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Fri, 25 Nov 2016

New package rlo with initial version 0.3.2
Package: rlo
Type: Package
Title: Utilities for Writing to 'LibreOffice Writer' Documents
Version: 0.3.2
Date: 2016-11-25
Authors@R: c(person("Johannes", "Ranke", role = c("aut", "cre", "cph"), email = "johannes.ranke@jrwb.de"))
Description: Utilities for writing to 'LibreOffice Writer' (see <https://www.libreoffice.org/discover/writer/> for more information) documents using the 'Python-UNO' bridge.
Depends: PythonInR
SystemRequirements: libreoffice, python-uno
URL: https://jranke.github.io/rlo
BugReports: https://github.com/jranke/rlo/issues
License: GPL
LazyLoad: yes
LazyData: yes
Encoding: UTF-8
RoxygenNote: 5.0.1.9000
NeedsCompilation: no
Packaged: 2016-11-25 13:34:59 UTC; jranke
Author: Johannes Ranke [aut, cre, cph]
Maintainer: Johannes Ranke <johannes.ranke@jrwb.de>
Repository: CRAN
Date/Publication: 2016-11-25 19:48:15

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New package mdpeer with initial version 0.1.0
Package: mdpeer
Title: Graph-Constrained Regression with Enhanced Regularization Parameters Selection
Version: 0.1.0
Authors@R: c(person("Marta", "Karas", email = "marta.karass@gmail.com", role = c("aut", "cre")), person("Damian", "Brzyski", email = "dbrzyski@iu.edu", role = "ctb"), person("Jaroslaw", "Harezlak", email = "harezlak@iu.edu", role = "ctb"))
Author: Marta Karas [aut, cre], Damian Brzyski [ctb], Jaroslaw Harezlak [ctb]
Maintainer: Marta Karas <marta.karass@gmail.com>
Description: Performs graph-constrained regularization in which regularization parameters are selected with the use of a known fact of equivalence between penalized regression and Linear Mixed Model solutions. Provides implementation of three different regression methods where graph-constraints among coefficients are accounted for. 'crPEER' (Partially Empirical Eigenvectors for Regression with Constant Ridge, Constant Ridge PEER) method utilizes additional Ridge term to handle the non-invertibility of a graph Laplacian matrix. 'vrPEER' (Variable Reduction PEER) method performs variable-reduction procedure to handle the non-invertibility of a graph Laplacian matrix. Finally, 'RidgePEER' method employs a penalty term being a linear combination of graph-originated and Ridge-originated penalty terms, whose two regularization parameters are ML estimators from corresponding Linear Mixed Model solution. Notably, in 'RidgePEER' method a graph-originated penalty term allows imposing similarity between coefficients based on graph information given whereas additional Ridge-originated penalty term facilitates parameters estimation: it reduces computational issues arising from singularity in a graph-originated penalty matrix and yields plausible results in situations when graph information is not informative or when it is unclear whether connectivities represented by a graph reflect similarities among corresponding coefficients.
Depends: R (>= 3.3.1)
Imports: MASS, glmgraph, magic, reshape2, ggplot2, scalreg, glmnet, nlme, nloptr
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-11-25 12:29:43 UTC; mkaras
Repository: CRAN
Date/Publication: 2016-11-25 19:48:06

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