CRANberries

CRANberries aggregates information about new, updated and removed packages from the
CRAN network for R available as this html version and a corresponding RSS feed.
Created and provided by Dirk Eddelbuettel.

Fri, 03 Feb 2012

New package catdata with initial version 1.0
Package: catdata
Type: Package
Title: Categorical Data
Version: 1.0
Date: 2010-04-13
Encoding: UTF-8
Depends: R (>= 2.10), MASS
Suggests: rms, qvcalc, glmmML, nnet, pscl, VGAM, gee, mlogit, Ecdat, geepack, mgcv, rpart, party, ordinal, lme4, vcdExtra, glmnet, mboost, class, e1071, flexmix, lqa, lpSolve, GAMBoost, penalized
Author: Gerhard Tutz, Marcus Gross, Sarah Maierhofer, Gunther Schauberger
Maintainer: Gunther Schauberger , Gerhard Tutz
Description: This R-package contains examples from the book "Regression for Categorical Data", Tutz 2011, Cambridge University Press. The names of the examples refer to the chapter and the data set that is used.
License: GPL-2
LazyLoad: yes
Packaged: 2012-02-03 10:29:32 UTC; schaubergerg
Repository: CRAN
Date/Publication: 2012-02-03 11:35:05

More information about catdata at CRAN
Path: /cran/new | permanent link

Thu, 02 Feb 2012

New package DiscreteLaplace with initial version 1.0
Package: DiscreteLaplace
Type: Package
Title: Discrete Laplace distribution
Version: 1.0
Date: 2012-01-29
Author: Alessandro Barbiero , Riccardo Inchingolo
Maintainer: Alessandro Barbiero
Description: Density, distribution function, quantile function, random generation and estimation for the skew discrete Laplace distribution
License: GPL
LazyLoad: yes
Packaged: 2012-01-29 21:34:31 UTC; Alessandro
Repository: CRAN
Date/Publication: 2012-02-02 16:12:25

More information about DiscreteLaplace at CRAN
Path: /cran/new | permanent link

New package DandEFA with initial version 1.0
Package: DandEFA
Type: Package
Title: Dandelion Plot for R-mode Exploratory Factor Analysis
Version: 1.0
Date: 2012-01-26
Author: Artur Manukyan, Ahmet Sedef, Erhan Cene, Ibrahim Demir (Advisor)
Depends: gplots, sfsmisc
Maintainer: Artur Manukyan
Description: This package contains the function used to create Dandelion Plot. Dandelion Plot is a visualization method for R-mode Exploratory Factor Analysis
License: GPL-2
Packaged: 2012-02-02 01:41:36 UTC; Artur
Repository: CRAN
Date/Publication: 2012-02-02 07:40:57

More information about DandEFA at CRAN
Path: /cran/new | permanent link

Wed, 01 Feb 2012

New package Interpol.T with initial version 1.0
Package: Interpol.T
Type: Package
Title: Hourly interpolation of multiple temperature daily series
Version: 1.0
Date: 2012-01-31
Author: Emanuele Eccel & Emanuele Cordano
Maintainer: Emanuele Eccel
Description: Hourly interpolation of daily minimum and maximum temperature series. Carries out interpolation on multiple series ad once. Requires some hourly series for calibration (alternatively can use default calibration table).
Depends: R (>= 2.10), date, chron
License: GPL (>= 2)
URL: http://cri.fmach.eu/Research/Sustainable-Agro-Ecosystems-and-Bioresources/Dynamics-in-the-agro-ecosystems,http://www.agrometeorologia.it/documenti/Rivista2010_2/AIAM%202-2010_pag41.pdf,http://www.agrometeorologia.it/documenti/Rivista2010_2/AIAM%202-2010_pag45.pdf
Collate: 'F_bias.R' 'F_daily_mean.R' 'F_date_time.R' 'F_Mo.Th.Ra.R' 'F_par_calibration.R' 'F_plot_meas_sim.R' 'F_shape_calibration.R' 'F_Th_interp.R' 'F_Th_int_series.R' 'Interpol.T-package.R'
Packaged: 2012-02-01 10:53:15 UTC; ecor
Repository: CRAN
Date/Publication: 2012-02-01 11:13:42

More information about Interpol.T at CRAN
Path: /cran/new | permanent link

New package RCALI with initial version 0.2-2
Package: RCALI
Title: Calculation of the Integrated Flow of Particles between Polygons
Version: 0.2-2
Date: 2012-01-31
Encoding: latin1
Author: Annie Bouvier, Kiên Kiêu, Kasia Adamczyk, and Hervé Monod
Maintainer: Annie Bouvier
Depends: splancs
Description: Calculate the flow of particles between polygons by two integration methods: integration by a cubature method and integration on a grid of points.
License: GPL (>= 3)
URL: http://www.inra.fr/miaj/public/logiciels/RCALI/
Packaged: 2012-02-01 08:15:48 UTC; abouvier
Repository: CRAN
Date/Publication: 2012-02-01 09:04:23

More information about RCALI at CRAN
Path: /cran/new | permanent link

New package FactoClass with initial version 1.0.8
Package: FactoClass
Version: 1.0.8
Date: 2012-01-25
Title: Combination of Factorial Methods and Cluster Analysis
Author: Campo Elias Pardo and Pedro Cesar del Campo , with the contributions from Camilo Jose Torres , Ivan Diaz , Mauricio Sadinle .
Maintainer: Campo Elias Pardo
Depends: R (>= 2.7.0), ade4, xtable
Description: Multivariate exploration of a data table with factorial analysis and cluster methods.
License: GPL (>= 2)
Encoding: latin1
Packaged: 2012-01-31 16:19:52 UTC; root
Repository: CRAN
Date/Publication: 2012-02-01 08:13:22

More information about FactoClass at CRAN
Path: /cran/new | permanent link

New package ExomeDepth with initial version 0.6.3
Package: ExomeDepth
Type: Package
Title: Calls CNV from exome sequence data
Version: 0.6.3
Date: 2011-11-20
Depends: R (>= 2.13.0), methods, aod, VGAM (>= 0.8.4), GenomicRanges, Rsamtools
Imports: methods, aod, VGAM, GenomicRanges, Rsamtools
Author: Vincent Plagnol
Maintainer: Vincent Plagnol
Description: Calls copy number variants (CNVs) from targeted sequence data
License: GPL-3
Packaged: 2012-02-01 00:20:27 UTC; vincentplagnol
Repository: CRAN
Date/Publication: 2012-02-01 08:13:21

More information about ExomeDepth at CRAN
Path: /cran/new | permanent link

Tue, 31 Jan 2012

New package TPAM with initial version 1.0
Package: TPAM
Type: Package
Title: TPAM
Version: 1.0
Date: 2011-07-30
Author: Yuping Zhang
Maintainer: Yuping Zhang
Description: Classification using time-course gene expression data, described in the following paper: Zhang Y, Tibshirani RJ, Davis RW. Classification of patients from time-course gene expression. Biostatistics 2012
License: GPL
LazyLoad: FALSE
Depends: pamr, MASS,Matrix
Packaged: 2012-01-31 20:58:27 UTC; yuping
Repository: CRAN
Date/Publication: 2012-01-31 21:46:42

More information about TPAM at CRAN
Path: /cran/new | permanent link

New package readMLData with initial version 0.9-4
Package: readMLData
Type: Package
Title: Reading machine learning benchmark data sets from different sources in their original format.
Version: 0.9-4
Date: 2012-01-31
Author: Petr Savicky
Maintainer: Petr Savicky
Description: The data are not part of the package. The package requires to receive a path to the data and a path to their description, which consists of one XML file and R scripts. Each data set is read into R as a data frame using its own R script. The tar ball "UCI_ML_DataDescription-*" provided at "http://www.cs.cas.cz/~savicky/readMLData" is an example of the description directory for some of the data sets from UCI Machine Learning Repository.
Depends: XML
License: GPL
Packaged: 2012-01-31 17:10:37 UTC; savicky
Repository: CRAN
Date/Publication: 2012-01-31 17:46:48

More information about readMLData at CRAN
Path: /cran/new | permanent link

New package DDD with initial version 0.2
Package: DDD
Type: Package
Title: Diversity-dependent diversification
Version: 0.2
Date: 2012-01-31
Depends: R (>= 2.14.1), optimx, deSolve
Author: Rampal S. Etienne & Bart Haegeman
Maintainer: Rampal S. Etienne
License: GPL-2
Description: DDD implements maximum likelihood methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent. See Etienne et al. 2011, Proc. Roy. Soc. B, doi: 10.1098/rspb.2011.1439
Packaged: 2012-01-31 11:27:29 UTC; Rampal S. Etienne
Repository: CRAN
Date/Publication: 2012-01-31 16:44:50

More information about DDD at CRAN
Path: /cran/new | permanent link

New package CAscaling with initial version 1.0
Package: CAscaling
Version: 1.0
Date: 2011-01-12
Title: CA scaling in R
Author: J. H. Straat
Maintainer: J. H. Straat
Depends: R (>= 2.14.1)
Description: CAscaling contains a nonparametric scaling procedure using conditional association. The scaling procedure is applicable to test and questionnaire data.
License: GPL (>= 2)
URL: http://www.tilburguniversity.edu/nl/webwijs/show/?uid=j.h.straat
Packaged: 2012-01-31 14:26:21 UTC; S220469
Repository: CRAN
Date/Publication: 2012-01-31 16:44:48

More information about CAscaling at CRAN
Path: /cran/new | permanent link

New package bayesMCClust with initial version 1.0
Package: bayesMCClust
Type: Package
Title: Mixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering
Version: 1.0
Date: 2012-01-26
Author: Christoph Pamminger
Maintainer: Christoph Pamminger
Description: This package provides various Markov Chain Monte Carlo (MCMC) sampler for model-based clustering of discrete-valued time series obtained by observing a categorical variable with several states (in a Bayesian approach). In order to analyze group membership, we provide also an extension to the approaches by formulating a probabilistic model for the latent group indicators within the Bayesian classification rule using a multinomial logit model.
Depends: R (>= 2.14.1), gplots, xtable, grDevices, mnormt, MASS, bayesm, boa, e1071, gtools
Suggests: nnet
License: GPL-2
LazyLoad: yes
Packaged: 2012-01-31 09:48:34 UTC; AK107357
Repository: CRAN
Date/Publication: 2012-01-31 10:57:02

More information about bayesMCClust at CRAN
Path: /cran/new | permanent link

New package vacem with initial version 0.1-1
Package: vacem
Version: 0.1-1
Date: 2012-01-30
Title: Vaccination Activities Coverage Estimation Model
Description: A likelihood framework for estimating the effective coverage of vaccination programs using cross-sectional surveys combined with administrative data.
Author: Justin Lessler , Jessica Metcalf
Maintainer: Ken Cline
Depends: foreach
Suggests: RUnit
License: GPL (>= 2)
LazyLoad: yes
Collate: 'vacem.r' 'coverage.r' 'analysis.r' 'sample.r'
Packaged: 2012-01-31 05:06:12 UTC; kcline
Repository: CRAN
Date/Publication: 2012-01-31 06:39:02

More information about vacem at CRAN
Path: /cran/new | permanent link

Mon, 30 Jan 2012

New package fwsim with initial version 0.1-2
Package: fwsim
Version: 0.1-2
Date: 2012-01-30
Title: Fisher-Wright Population Simulation
Author: Mikkel Meyer Andersen
Maintainer: Mikkel Meyer Andersen
Depends: R (>= 1.8.0)
Description: Simulates Fisher-Wright populations with growth.
License: BSD
URL: http://www.r-project.org
Packaged: 2012-01-30 15:41:01 UTC; mikl
Repository: CRAN
Date/Publication: 2012-01-30 17:31:26

More information about fwsim at CRAN
Path: /cran/new | permanent link

New package cpm with initial version 1.0
Package: cpm
Title: Sequential Parametric and Nonparametric Change Detection
Version: 1.0
Date: 2012-01-01
Author: Gordon J. Ross
Maintainer: Gordon J. Ross
Depends: methods
Description: Sequential change detection and Phase II process control for univariate data streams, using the change point model framework. Functions are provided to allow the parametric monitoring of sequences of Gaussian and Bernoulli random variables, along with more general nonparametric functions for monitoring sequences which have an unspecified or unknown distribution.
License: GPL-2
Packaged: 2012-01-30 10:08:43 UTC; ripley
Repository: CRAN
Date/Publication: 2012-01-30 10:09:06

More information about cpm at CRAN
Path: /cran/new | permanent link

New package McSpatial with initial version 1.0
Package: McSpatial
Type: Package
Title: Nonparametric spatial data analysis
Version: 1.0
Date: 2012-1-29
Author: Daniel McMillen
Maintainer: Daniel McMillen
Description: Locally weighted regression, semiparametric and conditionally parametric regression, fourier and cubic spline functions, GMM and linearized spatial logit and probit, k-density functions and counterfactuals, subcenter identification, misclassification probit, nonparametric quantile regression and conditional density functions, Machado-Mata decomposition for quantile regressions, spatial AR model, repeat sales models, conditionally parametric logit and probit
License: GPL (>= 2)
LazyLoad: yes
Suggests: akima, car, classInt, lattice, locfit, maptools, mlogit, quantreg, RColorBrewer, SparseM, spatstat, spdep
Packaged: 2012-01-29 22:41:52 UTC; Dan
Repository: CRAN
Date/Publication: 2012-01-30 06:29:08

More information about McSpatial at CRAN
Path: /cran/new | permanent link

Sun, 29 Jan 2012

New package rSFA with initial version 1.00
Package: rSFA
Maintainer: Martin Zaefferer
License: GPL (>= 2)
Title: Slow Feature Analysis in R
Type: Package
Author: Wolfgang Konen , Martin Zaefferer, Patrick Koch; Bug hunting and testing by Ayodele Fasika, Ashwin Kumar, Prawyn Jebakumar
Description: Slow Feature Analysis in R, ported to R based on the matlab versions SFA toolkit 1.0 by Pietro Berkes and SFA toolkit 2.8 by Wolfgang Konen for matlab.
Version: 1.00
URL: http://gociop.de/research-projects/sfa/
Date: 2012-Jan-28
Depends: R (>= 2.0.0), MASS
Collate: 'eta.R' 'gauss.R' 'lcov.R' 'nlRegress.R' 'sfa.R' 'sfaClassify.R' 'sfaCreate.R' 'sfaExecute.R' 'sfaExpand.R' 'sfaFileIO.R' 'sfaGetHf.R' 'sfaHelperFunctions.R' 'sfaParamBoot.R' 'sfaStep.R' 'sfaTimediff.R'
Packaged: 2012-01-28 18:50:02 UTC; Martin
Repository: CRAN
Date/Publication: 2012-01-29 07:59:36

More information about rSFA at CRAN
Path: /cran/new | permanent link

New package marelac with initial version 2.1.2
Package: marelac
Version: 2.1.2
Title: Tools for Aquatic Sciences
Author: Karline Soetaert , Thomas Petzoldt , Filip Meysman
Maintainer: Karline Soetaert
Depends: R (>= 2.10), shape, seacarb
Description: Datasets, constants, conversion factors, utilities for MArine, Riverine, Estuarine, LAcustrine and Coastal science. The package contains among others: (1) chemical and physical constants and datasets, e.g. atomic weights, gas constants, the earths bathymetry; (2) conversion factors (e.g. gram to mol to liter, barometric units, temperature, salinity); (3) physical functions, e.g. to estimate concentrations of conservative substances, gas transfer and diffusion coefficients, the Coriolis force and gravity; (4) thermophysical properties of the seawater, as from the UNESCO polynomial or from the more recent derivation based on a Gibbs function.
License: GPL (>= 2)
LazyData: yes
Packaged: 2012-01-28 19:48:23 UTC; user
Repository: CRAN
Date/Publication: 2012-01-29 08:13:23

More information about marelac at CRAN
Path: /cran/new | permanent link

Sat, 28 Jan 2012

New package ReCiPa with initial version 1.0
Package: ReCiPa
Type: Package
Title: Redundancy Control in Pathways databases
Version: 1.0
Date: 2012-01-26
Author: Juan C. Vivar
Maintainer: Juan C. Vivar
Description: Pathways in a database could have many redundancies among them. This package allows the user to set a maximum value for the proportion of these redundancies.
License: GPL-2
LazyLoad: yes
Packaged: 2012-01-27 14:47:33 UTC; jcvivar
Repository: CRAN
Date/Publication: 2012-01-28 17:00:22

More information about ReCiPa at CRAN
Path: /cran/new | permanent link

New package geotools with initial version 0.1
Package: geotools
Version: 0.1
Date: 2007-10-03
Suggests:
Title: Geo tools
Author: Antoine Lucas
Maintainer: Antoine Lucas
Description: Tools
License: GPL
Packaged: 2012-01-28 11:49:33 UTC; antoine
Repository: CRAN
Date/Publication: 2012-01-28 18:08:23

More information about geotools at CRAN
Path: /cran/new | permanent link

New package bild with initial version 1.0-3
Package: bild
Type: Package
Title: bild: a package for BInary Longitudinal Data
Version: 1.0-3
Date: 2012-1-28
Author: M. Helena Gonçalves, M. Salomé Cabral and Adelchi Azzalini, apart from a set of Fortran-77 subroutines written by R. Piessens and E. de Doncker, belonging to the suite "Quadpack"
Maintainer: M. Helena Gonçalves
Description: bild performs logistic regression for binary longitudinal data, allowing for serial dependence among observations from a given individual and a random intercept term. Estimation is via maximization of the exact likelihood of a suitably defined model. Missing values and unbalanced data are allowed, with some restrictions.
Encoding: latin1
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Depends: R (>= 2.10.0), methods, stats, graphics, utils
Packaged: 2012-01-28 13:46:17 UTC; Helena
Repository: CRAN
Date/Publication: 2012-01-28 16:55:03

More information about bild at CRAN
Path: /cran/new | permanent link

Fri, 27 Jan 2012

New package bit64 with initial version 0.8-2
Package: bit64
Type: Package
Title: A S3 class for vectors of 64bit integers
Version: 0.8-2
Date: 2011-12-12
Author: Jens Oehlschl\xE4gel
Maintainer: Jens Oehlschl\xE4gel
Depends: R (>= 2.14.0), bit (>= 1.1-8), methods
Description: Package 'bit64' provides serializable S3 atomic 64bit (signed) integers that can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters as well as many elementwise and summary functions. With 'integer64' vectors you can store very large integers at the expense of 64 bits, which is by factor 7 better than 'int64' from package 'int64'. Due to the smaller memory footprint, the atomic vector architecture and using only S3 instead of S4 classes, most operations are one to three orders of magnitude faster: Example speedups are 4x for serialization, 250x for adding, 900x for coercion and 2000x for object creation. Also 'integer64' avoids an ongoing (potentially infinite) penalty for garbage collection observed during existence of 'int64' objects (see code in example section). Last but not least, this package has no commercial copyright attached, it is not sponsored by any commercial company or otherwise influenced by commercial interests. Its mix of high-level R code with low-level C-code protects against misuse outside the GPLed R context.
License: GPL-2
LazyLoad: yes
ByteCompile: yes
URL: http://ff.r-forge.r-project.org/
Encoding: latin1
Packaged: 2012-01-26 21:52:56 UTC; rforge
Repository: CRAN
Repository/R-Forge/Project: ff
Repository/R-Forge/Revision: 94
Date/Publication: 2012-01-27 21:44:43

More information about bit64 at CRAN
Path: /cran/new | permanent link

New package PopGenome with initial version 1.0
Package: PopGenome
Type: Package
Title: Population genetic analysis
Version: 1.0
Date: 2011-03-17
Author: Bastian Pfeifer
Maintainer: Bastian Pfeifer
Depends: R (>= 1.8.0), methods
Description: PopGenome is an R-library for Population Genetic Analysis
License: GPL-2
LazyLoad: yes
Packaged: Fri Jan 27 11:21:33 2012; bapfe
Repository: CRAN
Date/Publication: 2012-01-27 12:51:08

More information about PopGenome at CRAN
Path: /cran/new | permanent link

New package paleotree with initial version 1.0
Package: paleotree
Type: Package
Version: 1.0
Title: Analyses for Paleontological Phylogenies
Date: 2012-01-17
Author: David Bapst
Depends: ape, phangorn, geiger
Suggests: paleoTS
Maintainer: David Bapst
Description: Analyzes, time-scales and simulates phylogenies of extinct/fossil lineages. Also plots diversity curves for stratigraphic range data and phylogenies, including combinations of the those two data types.
License: GPL (>= 2)
URL: http://home.uchicago.edu/~dwbapst/
Packaged: 2012-01-26 16:37:56 UTC; dwbapst_2
Repository: CRAN
Date/Publication: 2012-01-27 11:09:16

More information about paleotree at CRAN
Path: /cran/new | permanent link

New package GWAtoolbox with initial version 2.0.1
Package: GWAtoolbox
Version: 2.0.1
Date: 2012-01-25
Title: GWAS Quality Control
Author: Daniel Taliun , Christian Fuchsberger , Cristian Pattaro
Maintainer: Daniel Taliun , Christian Fuchsberger
Description: Controls for duplicated IDs, distribution of betas, SEs, etc.
Depends: R (>= 2.13.1)
Suggests: snow
SystemRequirements: GNU GSL
License: GPL (>= 3)
Repository: CRAN
Repository/R-Forge/Project: gwatoolbox
Repository/R-Forge/Revision: 64
Date/Publication: 2012-01-27 11:45:23
Packaged: 2012-01-26 10:55:45 UTC; rforge

More information about GWAtoolbox at CRAN
Path: /cran/new | permanent link

New package Ace with initial version 0.0.8
Package: Ace
Version: 0.0.8
Date: 2012-01-26
Title: Assay-based Cross-sectional Estimation of incidence rates
Author: Brian Claggett , Weiliang Qiu , Rui Wang
Maintainer: Brian Claggett
Depends: R (>= 2.9.0), stats
Description: The package contains functions for estimating incidence rate from assay-based cross-sectional studies
License: GPL (>= 2)
Packaged: 2012-01-26 22:53:16 UTC; stwxq
Repository: CRAN
Date/Publication: 2012-01-27 11:30:10

More information about Ace at CRAN
Path: /cran/new | permanent link

Wed, 25 Jan 2012

New package Rquake with initial version 1.2-2
Package: Rquake
Type: Package
Title: Seismic Hypocenter Determination
Version: 1.2-2
Date: 2012-01-02
Depends: R (>= 2.12), RPMG, RSEIS,GEOmap, RFOC, minpack.lm, cluster
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
Description: Rquake is a package for analaysis of seismic data collected continuously, or in trigger mode. The functions organize other functions from RSEIS and GEOmap to help researchers pick, locate, and store hypocenters for detailed seismic investigation.
License: GPL
Packaged: 2012-01-25 14:45:16 UTC; lees
Repository: CRAN
Date/Publication: 2012-01-25 19:56:41

More information about Rquake at CRAN
Path: /cran/new | permanent link

Tue, 24 Jan 2012

New package OneHandClapping with initial version 1.0
Package: OneHandClapping
Type: Package
Title: Prediction of condition-specific transcription factor interactions
Version: 1.0
Date: 2012-01-17
Author: Sebastian Dümcke
Maintainer: Sebastian Dümcke
Encoding: UTF-8
Description: Predictions of condition-specific TF interactions using gene activity data, such as mRNA expression measurements and a TF-target graph.
License: GPL (>= 2)
Imports: methods, graphics
Packaged: 2012-01-24 17:30:28 UTC; duemcke
Depends: R (>= 2.10)
Repository: CRAN
Date/Publication: 2012-01-24 18:13:06

More information about OneHandClapping at CRAN
Path: /cran/new | permanent link

New package occ with initial version 1.0
Package: occ
Type: Package
Title: Estimates PET neuroreceptor occupancies
Version: 1.0
Date: 2012-01-24
Author: Joaquim Radua
Maintainer: Joaquim Radua
Description: This package provides a generic function for estimating positron emission tomography (PET) neuroreceptor occupancies from the total volumes of distribution of a set of regions of interest. Fittings methods include the simple 'reference region' and 'ordinary least squares' (sometimes known as occupancy plot) methods, as well as the more efficient 'restricted maximum likelihood estimation'.
License: GPL
LazyLoad: yes
Packaged: 2012-01-24 15:58:16 UTC; quim
Repository: CRAN
Date/Publication: 2012-01-24 16:52:50

More information about occ at CRAN
Path: /cran/new | permanent link

New package oc with initial version 0.93
Package: oc
Version: 0.93
Date: 2012-01-24
Title: OC Roll Call Analysis Software.
Author: Keith Poole , Jeffrey Lewis , James Lo and Royce Carroll
Maintainer: James Lo
Depends: R (>= 2.3.1), pscl (>= 0.59)
Description: Estimates Optimal Classification scores from roll call votes supplied though a 'rollcall' object from package 'pscl'.
License: GPL-2
Repository: CRAN
Date/Publication: 2012-01-24 16:52:48
Packaged: 2012-01-24 14:37:08 UTC; jalo

More information about oc at CRAN
Path: /cran/new | permanent link

New package psgp with initial version 0.3-0
Package: psgp
Version: 0.3-0
Date: 2012-01-23
Title: Projected Spatial Gaussian Process (psgp) methods
Author: Ben Ingram , Remi Barillec
Maintainer: Remi Barillec
Depends: intamap, Rcpp (>= 0.8.0), RcppArmadillo (>= 0.2.0), doSNOW
LinkingTo: Rcpp, RcppArmadillo
Description: Implements projected sparse Gaussian process kriging for the intamap package
License: GPL (>= 2)
Repository: CRAN
Date/Publication: 2012-01-24 06:50:19
Packaged: 2012-01-23 22:28:13 UTC; barillrl

More information about psgp at CRAN
Path: /cran/new | permanent link

New package CALINE3 with initial version 1.0
Package: CALINE3
Type: Package
Title: R interface to Fortran 77 implementation of CALINE3
Version: 1.0
Date: 2012-01-22
Author: David Holstius
Maintainer: David Holstius
Description: Used by Rcaline
License: file LICENSE
Collate: 'CALINE3-package.R' 'libcaline3.R'
Packaged: 2012-01-24 02:34:41 UTC; holstius
Repository: CRAN
Date/Publication: 2012-01-24 06:50:14

More information about CALINE3 at CRAN
Path: /cran/new | permanent link

Mon, 23 Jan 2012

New package SPIn with initial version 1.0
Package: SPIn
Type: Package
Title: Optimal Shortest Probability Intervals
Version: 1.0
Date: 2011-12-30
Author: Ying Liu
Maintainer: Ying Liu
Depends: R (>= 1.8.0), quadprog
Description: Adopt an optimal weighting strategy to compute better shortest probability intervals (SPIns).
License: GPL (>= 2)
Packaged: 2012-01-23 19:42:38 UTC; Ying
Repository: CRAN
Date/Publication: 2012-01-23 20:13:43

More information about SPIn at CRAN
Path: /cran/new | permanent link

New package sitools with initial version 1.2
Package: sitools
Type: Package
Title: Format a number to a string with SI prefix
Version: 1.2
Date: 2012-01-23
Author: Jonas Stein, Ben Tupper
Maintainer: Jonas Stein
Description: Format a number (or a list of numbers) to a string (or a list of strings) with SI prefix. Use SI prefixes as constants like (4 * milli)^2
License: GPL-3
LazyLoad: yes
LazyData: yes
Packaged: 2012-01-23 01:24:49 UTC; stein
Repository: CRAN
Date/Publication: 2012-01-23 07:38:52

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New package parDEoptim with initial version 0.1
Package: parDEoptim
Type: Package
Title: Parallel Differential Evolution
Version: 0.1
Date: 2012-01-22
Author: Zach Mayer
Maintainer:
Depends: R (>= 1.14.0), methods, DEoptim, foreach, iterators (>= 1.0.0), codetools, utils
Description: Parallel Differential Evolution
License: GPL (>= 2)
Packaged: 2012-01-23 04:56:15 UTC; zachmayer
Repository: CRAN
Date/Publication: 2012-01-23 07:38:46

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Sun, 22 Jan 2012

New package SEER2R with initial version 1.0
Package: SEER2R
Type: Package
Title: reading and writing SEER*STAT data files
Version: 1.0
Date: 2011-09-28
Author: Jun Luo
Maintainer: Jun Luo
Description: read and write SEER*STAT data files
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-01-22 01:38:21 UTC; junluo
Repository: CRAN
Date/Publication: 2012-01-22 07:58:41

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New package pmc with initial version 0.0-4
Package: pmc
Type: Package
Title: Phylogenetic Monte Carlo
Version: 0.0-4
Author: Carl Boettiger
Maintainer: Carl Boettiger
Description: Monte Carlo based model choice for applied phylogenetics of continuous traits
URL: http://www.carlboettiger.info
License: BSD
Imports: ape, geiger, reshape, snowfall, TreeSim, methods, ouch
Depends: ggplot2, ouch
Collate: 'format_data.R' 'pmc.R' 'powercurve.R' 'wrappers_geiger.R' 'wrappers_laser.R' 'wrappers_ouch.R' 'wrappers_treepar.R' 'convert.R' 'treepalette.R' 'generics.R' 'data_documentation.R' 'maticce.R'
Packaged: 2012-01-21 18:30:46 UTC; cboettig
Repository: CRAN
Date/Publication: 2012-01-22 08:02:42

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Fri, 20 Jan 2012

New package scam with initial version 1.0
Package: scam
Type: Package
Title: Shape constrained additive models
Version: 1.0
Date: 2012-17-01
Author: Natalya Pya
Maintainer: Natalya Pya
Description: Routines for generalized additive modelling under shape constraints on the component functions of the linear predictor. Models can contain multiple shape constrained (univariate and/or bivariate) and unconstrained terms. The routines of mgcv(gam) package are used for setting up the model matrix, printing and plotting the results. Penalized likelihood maximization based on Newton-Raphson method to fit a model with multiple smoothing parameter selection by GCV or UBRE/AIC.
Depends: R (>= 2.3.0)
Imports: mgcv, graphics, stats
Suggests: mgcv, splines, Matrix
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-01-20 11:01:08 UTC; natalya
Repository: CRAN
Date/Publication: 2012-01-20 15:18:49

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Wed, 18 Jan 2012

New package XMLSchema with initial version 0.6-1
Package: XMLSchema
Version: 0.6-1
Title: R facilities to read XML schema
Author: Duncan Temple Lang
Depends: R (>= 1.5.0), methods, XML
Suggests: RCurl
Maintainer: Duncan Temple Lang
Description: A package that reads XML schema into an R representation and can perform some operations on the resulting information to generate class definitions and code to read documents using this schema. This is code that was originally in the SSOAP package for reading WSDL files that describe Web Services and use XML schema.
LazyLoad: yes
Imports: RCurl, codetools
License: GPL-2
Collate: ClassDefs.S processSchemaTypes.R SOAPTypes.S resolve.R genCode.R parseSchema.R createConverters.R schema.R array.S basicTypes.R utils.R selfRefs.R enums.R restriction.R makeSchemaCollection.R gatherNamespaceDefs.R targetNamespace.R fixTypeNames.R serialize.R toXML.R dependencies.R validity.R
URL: http://www.omegahat.org/XMLSchema, http://www.omegahat.org http://www.omegahat.org/bugs
Packaged: 2012-01-04 21:02:55 UTC; duncan
Repository: CRAN
Date/Publication: 2012-01-18 20:24:10

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New package SSOAP with initial version 0.9-0
Package: SSOAP
Version: 0.9-0
Date: 2012/01/12
Title: Client-side SOAP access for S
Author: Duncan Temple Lang
Depends: R (>= 1.5.0), methods
Imports: XML, RCurl, XMLSchema
Maintainer: Duncan Temple Lang
Description: A package that provides a client interface to SOAP (Simple Object Access Protocol) servers from within R.
LazyLoad: yes
License: GPL-2
Collate: ClassDefns.R fault.S http.S parseSOAP.S print.S RPC.R SOAP.S SOAPServer.S zSOAP.S duration.S nativeWrite.R functionAccessors.R writeGeneratedCode.R wsdlProcess.R utils.R toSOAP.R httpGet.R wsse.R
Note: There is an opportunity to do a lot of optimization in the machine generated code to reduce the processing time. This is a simple approach that "works" with little regard for optimization.
URL: http://www.omegahat.org/SSOAP, http://www.omegahat.org http://www.omegahat.org/bugs
Repository: CRAN
Date/Publication: 2012-01-18 20:24:08

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New package bams with initial version 1.0
Package: bams
Maintainer: Toby Dylan Hocking
Author: Toby Dylan Hocking
Version: 1.0
License: GPL-3
Title: Breakpoint annotation model smoothing
Description: Data and code to allow reproduction of "Learning smoothing models with breakpoint annotations."
Suggests: GLAD, DNAcopy, xtable, cghFLasso, flsa, cghseg, plyr, ggplot2, RColorBrewer, reshape2, lattice
Depends: R (>= 2.10)
Packaged: 2012-01-18 10:56:14 UTC; hocking
Repository: CRAN
Date/Publication: 2012-01-18 12:52:01

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New package RMendeley with initial version 0.1-1
Package: RMendeley
Description: A programmatic interface to the Web Service methods provided by the Mendeley open science project.
Title: Interface to Mendeley API methods
Version: 0.1-1
License: BSD
Author: Carl Boettiger, Duncan Temple Lang
Maintainer: Carl Boettiger
Imports: RJSONIO, RCurl (>= 1.6)
Collate: 'authored.R' 'authors.R' 'categories.R' 'details.R' 'groups.R' 'papers.R' 'public_groups_details.R' 'public_groups_documents.R' 'public_groups_overview.R' 'public_groups_people.R' 'publications.R' 'related.R' 'search.R' 'subcategories.R' 'tagged.R' 'tags.R' 'utilities.R'
Packaged: 2012-01-17 21:00:39 UTC; cboettig
Repository: CRAN
Date/Publication: 2012-01-18 06:51:55

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Tue, 17 Jan 2012

New package diseasemapping with initial version 0.6
Package: diseasemapping
Type: Package
Title: Calculate observed and expected disease incidence counts from a case file and population data.
Version: 0.6
Date: 2012-01-17
Depends: mgcv
Enhances: diseasemappingDevel, glmmBUGS, sp, spdep, INLA
Author: Patrick Brown
Maintainer: Lutong Zhou
Description: Some tools for calculating rates and Standardized Incidence Ratios from case and population data.
License: GPL
Packaged: 2012-01-17 15:50:43 UTC; patrick
Repository: CRAN
Date/Publication: 2012-01-17 16:48:24

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New package knitr with initial version 0.1
Package: knitr
Type: Package
Title: A general-purpose package for dynamic report generation in R
Version: 0.1
Date: 2012-01-18
Authors@R: c(person("Hadley", "Wickham", email = "hadley@rice.edu", role = "ctb"), person("Ramnath", "Vaidyanathan", role = "ctb"), person("Yihui", "Xie", email = "xie@yihui.name", role = c("aut", "cre")))
Author: Yihui Xie
Maintainer: Yihui Xie
Description: This package provides a general-purpose tool for dynamic report generation in R, which can be used to deal with any type of (plain text) files, including Sweave and HTML. The patterns of code chunks and inline R expressions can be customized. R code is evaluated as if it were copied and pasted in an R terminal thanks to the evaluate package (e.g. we do not need to explicitly print() plots from ggplot2 or lattice). R code can be reformatted by the formatR package so that long lines are automatically wrapped, with indent and spaces being added, and comments being preserved. A simple caching mechanism is provided to cache results from computations for the first time and the computations will be skipped the next time. Almost all common graphics devices, including those in base R and add-on packages like Cairo, cairoDevice and tikzDevice, are built-in with this package and it is straightforward to switch between devices without writing any special functions. The width and height as well as alignment of plots in the output document can be specified in chunk options (the size of plots for graphics devices is still supported as usual). Multiple plots can be recorded in a single code chunk, and it is also allowed to rearrange plots to the end of a chunk or just keep the last plot. Warnings, messages and errors are written in the output document by default (can be turned off). Currently LaTeX, HTML and Markdown are supported, and other output formats can be supported by hook functions. The large collection of hooks in this package makes it possible for the user to control almost everything in the R code input and output. Hooks can be used either to format the output or to run a specified R code fragment before or after a code chunk. Most features are borrowed or inspired by Sweave, cacheSweave, pgfSweave, brew and decumar.
Depends: R (>= 2.14.1)
Imports: evaluate (>= 0.4), digest, formatR (>= 0.3-4), stringr, tools, highlight, utils
Suggests: testthat, rgl, tikzDevice (>= 0.6.2), XML
License: GPL
URL: http://yihui.github.com/knitr/
BugReports: https://github.com/yihui/knitr/issues
Collate: 'package.R' 'defaults.R' 'parser.R' 'cache.R' 'pattern.R' 'output.R' 'block.R' 'hooks.R' 'utils.R' 'plot.R' 'zzz.R' 'header.R' 'themes.R' 'eclipse.R'
Packaged: 2012-01-17 06:52:19 UTC; yihui
Repository: CRAN
Date/Publication: 2012-01-17 07:59:42

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Mon, 16 Jan 2012

New package endorse with initial version 1.0
Package: endorse
Version: 1.0
Date: 2012-01-16
Title: endorse: R Package for Analyzing Endorsement Experiments
Author: Yuki Shiraito , Kosuke Imai
Maintainer: Yuki Shiraito
Depends: coda, utils
Description: This R package implements the statistical model proposed by Bullock, Imai, and Shapiro (2011; Political Analysis) to analyze endorsement experiments. Endorsement experiments are a survey methodology for eliciting truthful responses to sensitive questions. This methodology is helpful when measuring support for socially sensitive political actors such as militant groups. The model is fitted with the Markov chain Monte Carlo algorithm and produces the output containing draws from the posterior distribution.
LazyLoad: yes
LazyData: yes
License: GPL (>= 2)
URL: http://imai.princeton.edu/software/endorse.html
Packaged: 2012-01-16 21:46:43 UTC; shiraito
Repository: CRAN
Date/Publication: 2012-01-16 22:17:05

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New package NlsyLinks with initial version 0.10
Package: NlsyLinks
Type: Package
Title: Utilities and kinship information for Behavioral Genetics research using the NLSY.
Version: 0.10
Date: 2012-01-14
Author: Will Beasley, Joe Rodgers, Kelly Williams, and David Bard
Maintainer: Will Beasley
Description: Utilities and kinship information for Behavioral Genetics research using the NLSY.
License: GPL
LazyLoad: yes
Packaged: 2012-01-16 19:15:31 UTC; wibeasley
Depends: R (>= 2.10)
Repository: CRAN
Date/Publication: 2012-01-16 21:00:38

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New package StressStrength with initial version 1.0
Package: StressStrength
Type: Package
Title: Computation and estimation of reliability of stress-strength models
Version: 1.0
Date: 2012-01-03
Author: Alessandro Barbiero , Riccardo Inchingolo
Maintainer: Alessandro Barbiero
Description: The package provide functions for computing the reliability of stress-strength models and for building two-sided or one-sided confidence intervals according to different approximate procedures
License: GPL
LazyLoad: yes
Packaged: 2012-01-13 20:43:37 UTC; Alessandro
Repository: CRAN
Date/Publication: 2012-01-16 12:41:26

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New package mgraph with initial version 1.0
Package: mgraph
Type: Package
Title: Graphing map attributes and non-map variables in R
Version: 1.0
Date: 2012-01-10
Author: George Owusu
Maintainer: George Owusu
Depends: rgdal (>= 0.5.2)
suggests: gstat
Description: Each function in the package performs three main functions i) it reads spatial data and produces basic graphs including pie chart, bar chart, box plots, histogram, scatter plots, and lines ii)it reads non-spatial data such as "csv", "txt", "dat" data and produces basic graphs and iii) it plots map(s) of the input attribute(s) of spatial data by setting "type" parameter to "map"
URL: http://www.ug.edu.gh/index1.php?linkid=616§ionid=919&page=2
License: GPL (>= 2.0)
Packaged: 2012-01-16 09:29:12 UTC; george
Repository: CRAN
Date/Publication: 2012-01-16 12:41:32

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Sun, 15 Jan 2012

New package PKPDmodels with initial version 0.3.2
Package: PKPDmodels
Title: Pharmacokinetic/pharmacodynamic models
Type: Package
Version: 0.3.2
Date: 2012-01-14
Author: Anne Dubois, Julie Bertand, France Mentre and Douglas Bates
Description: Provides functions to evaluate common pharmacokinetic/pharmacodynamic models and their gradients.
Depends: R(>= 2.13.0)
Imports: compiler
Suggests: lattice
Maintainer: Douglas Bates
License: GPL (>= 2)
LazyLoad: yes
URL: http://PKPD.R-forge.R-project.org
Collate: 'PKPDmodels.R'
Packaged: 2012-01-15 17:03:51 UTC; bates
Repository: CRAN
Date/Publication: 2012-01-15 20:48:08

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New package Rmixmod with initial version 1.0
Package: Rmixmod
Maintainer: Remi Lebret
License: GPL-3
BugReports: see http://www.mixmod.org/article.php3?id_article=23
Title: MIXture MODelling Package
LinkingTo: Rcpp
Type: Package
LazyLoad: yes
Author: Remi Lebret, Serge Iovleff and Aude Longeville
Description: High Performance Model-Based Cluster
Version: 1.0
URL: http://www.mixmod.org
Date: 2012-01-10
Depends: R(>= 2.2.0), Rcpp(>= 0.8.0), methods, graphics
Collate: 'Algo.R' 'Model.R' 'Parameter.R' 'GaussianParameter.R' 'global.R' 'Mixmod.R' 'MixmodClustering.R' 'MultinomialModel.R' 'MultinomialParameter.R' 'Rmixmod.R' 'GaussianModel.R'
Packaged: 2012-01-14 17:55:29 UTC; lebret
Repository: CRAN
Date/Publication: 2012-01-15 12:02:10

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Sat, 14 Jan 2012

New package evora with initial version 1.0
Package: evora
Type: Package
Title: Epigenetic Variable Outliers for Risk prediction Analysis
Version: 1.0
Date: 2012-01-14
Author: Andrew E Teschendorff
Maintainer:
Depends: qvalue, Hmisc
Description: EVORA is an adaptive index classification algorithm which selects features based on differential variability and is aimed at DNA methylation array studies.
License: GPL-2
LazyLoad: yes
Packaged: 2012-01-14 08:52:23 UTC; aet21
Repository: CRAN
Date/Publication: 2012-01-14 09:25:02

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New package mmod with initial version 0.1.1
Package: mmod
Version: 0.1.1
Date: 2011-11-22
Title: Modern measures of population divergence
Author: David Winter
Maintainer: David Winter
Depends: R (>= 2.6.0), adegenet
ZipData: no
Description: mmod provides functions for measuring population divergence from genotypic data
License: MIT
URL: https://github.com/dwinter/mmod
Collate: 'diff_stats.R' 'D_Jost.R' 'Gst_Hedrick.R' 'Gst_Nei.R' 'harmonic_mean.R' 'jacknife_pop.R' 'pairwise_D.R' 'pairwise_Gst_Hedrick.R' 'pairwise_Gst_Nei.R' 'help.R' 'diff_test.R'
Packaged: 2012-01-14 06:47:33 UTC; david
Repository: CRAN
Date/Publication: 2012-01-14 09:00:23

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New package IgorR with initial version 0.4
Package: IgorR
Type: Package
Title: Read binary files saved by Igor Pro (including Neuromatic data)
Version: 0.4
Date: 2012-01-13
Author: Greg Jefferis
Maintainer: Greg Jefferis
Description: This package provides function to read data from the Igor Pro data analysis program by Wavemetrics. The data formats supported are Igor packed experiment format (pxp) and Igor binary wave (ibw). See: http://www.wavemetrics.com/ for details. It also includes some functions to load special pxp files produced by the Neuromatic/Nclamp packages for recording and analysing neuronal data. See http://www.neuromatic.thinkrandom.com/ for details.
Depends: bitops, tools
Suggests: testthat
License: GPL (>= 2)
LazyLoad: yes
Collate: 'ReadIgorBinary.R' 'ReadNclamp.R'
Packaged: 2012-01-13 18:17:28 UTC; jefferis
Repository: CRAN
Date/Publication: 2012-01-14 08:59:55

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New package cepp with initial version 1.0
Package: cepp
Type: Package
Title: Context Driven Exploratory Projection Pursuit
Version: 1.0
Date: 2012-01-11
Author: Mohit Dayal
Maintainer: Mohit Dayal
Description: Functions and Data to support context epp.
Depends: R (>= 2.10), trust, randtoolbox
Suggests: tourr
License: GPL-3
Packaged: 2012-01-13 12:01:16 UTC; mohit
Repository: CRAN
Date/Publication: 2012-01-14 09:00:21

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Fri, 13 Jan 2012

New package mmds with initial version 1.0
Package: mmds
Version: 1.0
Date: 2011-07-10
Title: Mixture Model Distance Sampling (mmds)
Author: David Lawrence Miller
Maintainer: David Lawrence Miller
Description: This library implements mixture model distance sampling methods. See Miller and Thomas (in prep.).
Depends: R (>= 2.8.0)
LazyLoad: yes
License: GPL-2
Packaged: 2012-01-12 20:47:37 UTC; dill
Repository: CRAN
Date/Publication: 2012-01-13 08:05:58

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New package clhs with initial version 0.4-3
Package: clhs
Type: Package
Title: Conditioned Latin Hypercube Sampling
Version: 0.4-3
Date: 2012-01-12
Author: Pierre Roudier
Maintainer: Pierre Roudier
Description: This package implements the conditioned Latin hypercube sampling, as published by Minasny and McBratney (2006). This method proposes to stratify sampling in presence of ancillary data.
Depends: R (>= 2.9.0), utils, methods, grid, ggplot2, sp, raster, reshape2
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-01-11 22:18:35 UTC; roudierp
Repository: CRAN
Date/Publication: 2012-01-13 08:05:51

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New package cheatmap with initial version 1.0.0
Package: cheatmap
Title: Comparing heatmaps
Version: 1.0.0
Date: 2011-12-27
Depends: R (>= 2.10.0), grid
Author: Xiaoyong Sun
Maintainer: Xiaoyong Sun
Description: Compare two heatmaps
License: GPL (>= 2)
LazyData: true
Repository: CRAN
Date/Publication: 2012-01-13 08:05:50
Packaged: 2012-01-13 02:36:36 UTC; sunx1

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Thu, 12 Jan 2012

New package BTSPAS with initial version 2012.01
Package: BTSPAS
Version: 2012.01
Date: 2012-01-10
Title: Bayesian Time-Strat. Population Analysis
Author: Carl J Schwarz and Simon J Bonner
Maintainer: Carl J Schwarz
Depends: coda, splines, actuar, BRugs, R2OpenBUGS
Description: BTSPAS provides advanced Bayesian methods to estimate abundance and run-timing from temporally-stratified Petersen mark-recapture experiments. Methods include hierarchical modelling of the capture probabilities and spline smoothing of the daily run size.
URL: http://www.stat.sfu.ca/~cschwarz/Consulting/Trinity/Phase2
License: GPL (>= 2)
Repository: CRAN
Repository/R-Forge/Project: btspas
Repository/R-Forge/Revision: 96
Date/Publication: 2012-01-12 21:05:08
Packaged: 2012-01-11 21:42:55 UTC; rforge

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New package translate with initial version 0.1
Package: translate
Type: Package
Title: Bindings for the Google Translate API v2
Description: Bindings for the Google Translate API v2
Version: 0.1
Date: 2012-01-11
Author: Peter Danenberg
Maintainer: Peter Danenberg
License: GPL
Imports: RCurl, RJSONIO, functional, lisp
Suggests: debug
Collate: 'translate.R'
Packaged: 2012-01-11 19:42:24 UTC; pcdanenb
Repository: CRAN
Date/Publication: 2012-01-12 09:24:54

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New package rstiefel with initial version 0.9
Package: rstiefel
Type: Package
Title: Random orthonormal matrix generation on the Stiefel manifold
Version: 0.9
Date: 2012-01-02
Author: Peter Hoff
Maintainer: Peter Hoff
Description: This package simulates random orthonormal matrices from linear and quadratic exponential family distributions on the Stiefel manifold. The most general type of distribution covered is the matrix-variate Bingham-von Mises-Fisher distribution. Most of the simulation methods are presented in Hoff(2009) "Simulation of the Matrix Bingham-von Mises-Fisher Distribution, With Applications to Multivariate and Relational Data."
License: GPL-3
Packaged: 2012-01-11 17:48:21 UTC; root
Repository: CRAN
Date/Publication: 2012-01-12 09:24:49

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New package opencpu.demo with initial version 0.4
Package: opencpu.demo
Maintainer: Jeroen Ooms
License: AGPL
Encoding: UTF-8
Title: OpenCPU Demo apps.
Type: Package
Author: Various contributors
Description: Some demo R functions and apps for OpenCPU
Version: 0.4
Date: 2012-01-06
Suggests: ggplot2, httpRequest, lattice
Collate: 'liveplot.R' 'nabel.R' 'testplothandlers.R'
Packaged: 2012-01-11 23:55:04 UTC; jeroen
Repository: CRAN
Date/Publication: 2012-01-12 09:24:42

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New package mobForest with initial version 1.0
Package: mobForest
Type: Package
Title: Model based Random Forest analysis
Version: 1.0
Date: 2011-12-12
Author: Nikhil Garge and Barry Eggleston
Maintainer: Nikhil Garge
Description: This package implements random forest method for model based recursive partitioning. The mob() function, developed by Zeileis et al (2008), within party package, is modified to contruct model-based decesion trees based on random forest methodology. The main input function mobForestAnalysis() takes all input parameters to construct trees, compute out-of-bag errors, predictions, and overall accuracy of forest. The algorithm performs parallel computation using clusterApply() function within 'parallel' package.
License: GPL (>= 2)
LazyLoad: yes
Depends: parallel, party
Imports: methods, modeltools
Suggests: mlbench
Packaged: 2012-01-10 21:00:03 UTC; ngarge
Repository: CRAN
Date/Publication: 2012-01-12 09:30:27

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New package lisp with initial version 0.1
Package: lisp
Type: Package
Encoding: UTF-8
Title: List-processing à la SRFI-1
Version: 0.1
Date: 2010-03-02
Author: Peter Danenberg
Maintainer: Peter Danenberg
Description: Though SRFI-1 scopes both list-processing and higher-order programming, we'll save some list-orthogonal functions for the `functional' package; this is freely a mixture of implementation and API.
License: GPL (>= 2)
LazyLoad: yes
Suggests: RUnit
Collate: 'lisp.R'
Packaged: 2012-01-11 18:27:18 UTC; pcdanenb
Repository: CRAN
Date/Publication: 2012-01-12 09:24:37

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New package intReg with initial version 0.1-2
Package: intReg
Version: 0.1-2
Date: 2012-01-12
Title: Interval Regression
Author: Ott Toomet
Maintainer: Ott Toomet
Depends: R (>= 2.7.0), maxLik (>= 1.0-3), sets
Imports: sets
Suggests: Ecdat
Description: Estimating interval regression models. Both common and observation-specific boundaries may be specified.
License: GPL (>= 2)
URL: http://CRAN.R-project.org, http://www.sampleSelection.org
Packaged: 2012-01-12 06:57:05 UTC; siim
Repository: CRAN
Date/Publication: 2012-01-12 09:24:36

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Wed, 11 Jan 2012

New package bcrm with initial version 0.1
Package: bcrm
Type: Package
Title: Bayesian continuous reasssessment method (CRM) designs for Phase I dose-finding trials.
Version: 0.1
Date: 2012-01-10
Author: Michael Sweeting
Maintainer: Michael Sweeting
Description: This package implements a wide variety of one and two-parameter Bayesian CRM designs. The program can run interactively, allowing the user to enter outcomes after each cohort has been recruited, or via simulation to assess operating characteristics.
License: GPL (>= 2)
LazyLoad: yes
Depends: mvtnorm, ggplot2
Suggests: R2WinBUGS, BRugs
Packaged: 2012-01-10 15:26:19 UTC; michaels
Repository: CRAN
Date/Publication: 2012-01-11 13:19:38

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New package RGIFT with initial version 0.1-3
Package: RGIFT
Version: 0.1-3
Encoding: latin1
Date: 2012-01-10
Title: Create quizzes in GIFT Format
Author: María José Haro-Delicado, Virgilio Gómez-Rubio and Francisco Parreño-Torres
Maintainer: Virgilio Gómez-Rubio
Depends: R (>= 2.10.0)
Suggests: foreign
Description: This package provides some functions to create quizzes in the GIFT format. This format is used by several Virtual Learning Environments such as Moodle.
License: GPL (>= 2)
URL: http://docs.moodle.org/21/en/GIFT_format
Packaged: 2012-01-10 22:33:39 UTC; virgil
Repository: CRAN
Date/Publication: 2012-01-11 07:02:30

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Tue, 10 Jan 2012

New package NetComp with initial version 0.1
Package: NetComp
Version: 0.1
Date: 2011-12-31
Title: Network Generation and Comparison
Author: Shannon M. Bell
Maintainer: Shannon M. Bell
Depends: R (>= 2.12.1)
Imports: igraph
LazyLoad: yes
Description: This package contains functions to carry out analyse high throughput data analysis and to conduct dataset comparisons. Similarity matrices from high thoughput phenotypic data containing uninformative (e.g. wildtype) or missing data can be calculated to report similarity of response. A suite of graph comparisons using an adjacency or correlation matrix format are included to facilitate quick network analysis. Additionally, a function for calculating the path length of all vertices in a network is provided to assist researchers in graph comparisons for meta analysis.
License: GPL (>= 3)
Packaged: 2012-01-10 14:21:43 UTC; shannon
Repository: CRAN
Date/Publication: 2012-01-10 16:50:45

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New package comparison with initial version 0.2-2
Package: comparison
Version: 0.2-2
Date: 08/01/2012
Title: Multivariate likelihood ratio calculation and evaluation
Author: David Lucy
Maintainer: David Lucy
Description: Functions for calculating and evaluating likelihood ratios from uni/multivariate continuous observations
Depends: isotone, methods
License: GPL-2
LazyLoad: yes
Packaged: 2012-01-10 11:32:29 UTC; lucy
Repository: CRAN
Date/Publication: 2012-01-10 17:10:35

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New package hitandrun with initial version 0.2
Package: hitandrun
Type: Package
Title: "Hit and Run" method for sampling uniformly form convex shapes.
Version: 0.2
Date: 2011-06-29
Author: Gert van Valkenhoef
Maintainer: Gert van Valkenhoef
Description: This package provides an implementation of the "Hit and Run" method for sampling uniformly from convex shapes. It further provides specialized implementation for sampling normalized weights with arbitrary linear constraints.
License: GPL (>= 3)
LazyLoad: yes
Depends: rcdd (>= 1.1)
Packaged: 2012-01-10 10:01:05 UTC; gert
Repository: CRAN
Date/Publication: 2012-01-10 10:38:27

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New package SGPdata with initial version 1.0-0.0
Package: SGPdata
Type: Package
Title: Exemplar data sets for SGP analyses.
Version: 1.0-0.0
Date: 2012-1-9
Authors@R: c(person("Damian", "Betebenner", email="dbetebenner@nciea.org", role=c("aut", "cre")), person("Adam", "Van Iwaarden", email="Vaniwaarden@colorado.edu", role="aut"), person("Ben", "Domingue", email="ben.domingue@gmail.com", role="aut"))
Author: Damian W. Betebenner , Adam Van Iwaarden and Ben Domingue .
Maintainer: Damian W. Betebenner
Depends: R (>= 2.12)
Suggests: SGP (>= 0.8-0.0)
Description: The package SGPdata contains two data sets utilized by the SGP Package as exemplars for users to set up their own data for SGP analyses.
URL: http://cran.r-project.org/web/packages/SGPdata/
LazyLoad: Yes
LazyData: Yes
License: CC BY-SA 3.0 US + file LICENSE
Packaged: 2012-01-09 13:27:57 UTC; damian
Repository: CRAN
Date/Publication: 2012-01-10 07:25:58

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Mon, 09 Jan 2012

New package G2Sd with initial version 1.1
Package: G2Sd
Type: Package
Title: Grain-size Statistics and Description of Sediment
Version: 1.1
Date: 2012-01-04
Author: Regis K. Gallon (MNHN), Jerome Fournier (CNRS|MNHN)
Maintainer: Regis K. Gallon
Description: G2Sd package gives full descriptive statistics and a physical description of sediment obtained with AFNOR or phi sieves according to the grain size distribution.
License: GPL (>= 2.0)
URL: www.r-project.org
LazyLoad: yes
Packaged: 2012-01-09 11:34:21 UTC; rgallon
Repository: CRAN
Date/Publication: 2012-01-09 11:54:17

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Sun, 08 Jan 2012

New package mosaicManip with initial version 0.2-6
Package: mosaicManip
Type: Package
Title: Project MOSAIC (mosaic-web.org) manipulate examples.
Version: 0.2-6
Date: 2011-12-29
Depends: grid, lattice, Hmisc, methods, mosaic
Suggests: MASS, manipulate
Author: Andrew Rich , Daniel Kaplan , Randall Pruim
Maintainer: Daniel Kaplan , Randall Pruim
Description: These applets allow the user to change displays with sliders, checkboxes and other GUI elements. There are applets for calculus, statistics, and epidemiology.
License: GPL
LazyLoad: yes
LazyData: yes
Packaged: 2011-12-31 15:29:07 UTC; rpruim
Repository: CRAN
Date/Publication: 2012-01-08 16:04:57

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New package sentiment with initial version 0.1
Package: sentiment
Type: Package
Title: Tools for Sentiment Analysis
Version: 0.1
Date: 2012-01-01
Author: Timothy P. Jurka
Maintainer: Timothy P. Jurka
Depends: R (>= 2.13.0), tm, Rstem
LinkingTo: Rcpp
Description: sentiment is an R package with tools for sentiment analysis, including bayesian classifiers for positivity/negativity and emotion classification.
License: GPL-3
LazyLoad: yes
Packaged: 2012-01-02 01:45:25 UTC; timjurka
Repository: CRAN
Date/Publication: 2012-01-08 14:36:12

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Sat, 07 Jan 2012

New package MRCE with initial version 1.0
Package: MRCE
Type: Package
Title: MRCE
Version: 1.0
Date: 2012-01-07
Author: Adam J. Rothman
Maintainer: Adam J. Rothman
Depends: R (>= 2.10.1), glasso, glmnet
Description: Multivariate regression with covariance estimation
License: GPL (>= 3)
LazyLoad: yes
Packaged: 2012-01-08 01:45:43 UTC; adam
Repository: CRAN
Date/Publication: 2012-01-08 02:06:22

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New package curvclust with initial version 0.0.1
Package: curvclust
Type: Package
Title: Curve clustering
Version: 0.0.1
Date: 2012-01-01
Author: Madison Giacofci, Sophie Lambert-Lacroix, Guillemette Marot, Franck Picard
Maintainer: Franck Picard
Depends: R (>= 2.6.0), methods, wavethresh
Description:
License: GPL (>= 2)
Packaged: 2012-01-06 14:56:55 UTC; root
Repository: CRAN
Date/Publication: 2012-01-07 20:54:40

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New package events with initial version 0.5
Package: events
Type: Package
Title: Store and manipulate event data
Version: 0.5
Date: 2011-12-03
Author: Will Lowe
Maintainer: Will Lowe
Depends: R (>= 2.10)
Description: Stores, manipulates, aggregates and otherwise messes with event data from KEDS/TABARI or any other extraction tool with similar output
License: GPL
Collate: 'events.R'
Packaged: 2012-01-07 17:19:41 UTC; will
Repository: CRAN
Date/Publication: 2012-01-07 17:47:40

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New package iGasso with initial version 1.0
Package: iGasso
Type: Package
Title: Genetic association tests
Version: 1.0
Date: 2012-01-06
Author: Dr. Kai Wang
Maintainer: Kai Wang
Description: A collection of statistical tests for genetic association studies
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-01-07 07:15:14 UTC; kaiwang
Repository: CRAN
Date/Publication: 2012-01-07 11:07:37

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Fri, 06 Jan 2012

New package bda with initial version 1.1.1-7
Package: bda
Version: 1.1.1-7
Date: 2011-09-16
Title: Algorithms for Birth Data Analysis
Author: Bin Wang .
Maintainer: Bin Wang
Depends: R (>= 2.5.0), stats
Suggests: MASS
Description: This package collects functions developed for density estimation, regression and simultaneous confidence bands construction, EM based on data subject to measurement errors.
License: Unlimited
Packaged: 2012-01-06 19:26:21 UTC; bwang
Repository: CRAN
Date/Publication: 2012-01-06 20:56:24

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New package rportfolios with initial version 1.0
Package: rportfolios
Version: 1.0
Date: 2010-11-23
Author: Frederick Novomestky
Maintainer: Frederick Novomestky
Depends: R (>= 2.0.1)
Description: A collection of utility functions to generate various types of random portfolios. The weights of these portfolios are random variables derived from uniformly distributed random variables
Title: Random portfolio generation
License: GPL (>= 2)
Packaged: 2012-01-05 22:54:41 UTC; fred
Repository: CRAN
Date/Publication: 2012-01-06 06:14:13

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Thu, 05 Jan 2012

New package BBmisc with initial version 1.0-58
Package: BBmisc
Title: Miscellaneous helper functions for B. Bischl.
Description: Miscellaneous helper functions for and from B. Bischl and some other guys at TU Dortmund, mainly for package development.
Author: Bernd Bischl , Michel Lang , Olaf Mersmann
Maintainer: Bernd Bischl
License: BSD
Depends: stringr
LazyData: yes
ByteCompile: yes
Version: 1.0-58
Collate: 'catf.R' 'checkArg.R' 'checkListElementClass.R' 'coalesce.R' 'collapse.R' 'convertInteger.R' 'directory.R' 'extractSubList.R' 'factor.R' 'insert.R' 'is_error.R' 'isProperlyNamed.R' 'listToShortString.R' 'makeProgressBar.R' 'messagef.R' 'namedList.R' 'printToChar.R' 'requirePackages.R' 'save2.R' 'splitTime.R' 'stopf.R' 'suppressAll.R' 'warningf.R'
Packaged: 2012-01-05 13:52:18 UTC; bischl
Repository: CRAN
Date/Publication: 2012-01-05 14:34:57

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Wed, 04 Jan 2012

New package Simile with initial version 1.1
Package: Simile
Type: Package
Title: Interact with Simile models
Version: 1.1
Depends: tcltk
Date: 2011-12-13
Author: Simulistics Ltd
Maintainer: Simile support
Description: Allows a Simile model saved as a compiled binary to be loaded, parameterized, executed and interrogated
License: Unlimited
LazyLoad: yes
Packaged: 2012-01-04 15:44:47 UTC; jaspert
Repository: CRAN
Date/Publication: 2012-01-04 16:35:40

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New package coloc with initial version 1.05
Package: coloc
Type: Package
Depends: methods
Title: Colocalisation tests of two genetic traits
Version: 1.05
Date: 2012-01-03
Author: Chris Wallace
Maintainer: Chris Wallace
Description: Performs the colocalisation tests described in Plagnol et al (2009) and Wallace et al (in preparation).
License: GPL
LazyLoad: yes
Packaged: 2012-01-03 14:13:49 UTC; chrisw
Repository: CRAN
Date/Publication: 2012-01-04 15:16:08

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New package BRugs with initial version 0.7-4
Package: BRugs
Title: R interface to the OpenBUGS MCMC software
Version: 0.7-4
Date: 2011-12-30
Author: OpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson.
Description: Fully-interactive R interface to the OpenBUGS software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on Linux and on 64-bit R under Windows are in "beta" status and less efficient.
Maintainer: Uwe Ligges
Depends: R (>= 2.11.0), coda
Imports: utils, coda
SystemRequirements: OpenBUGS (>= 3.2.1), hence Windows or Linux
License: GPL-2
URL: http://www.openbugs.info/
Packaged: 2012-01-03 10:02:41 UTC; ligges
Repository: CRAN
Date/Publication: 2012-01-04 14:49:10

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New package Compounding with initial version 1.0
Package: Compounding
Type: Package
Title: Computing Continuous Distributions
Version: 1.0
Date: 2011-11-15
Author: Bozidar V. Popovic, Saralees Nadarajah, Miroslav M. Ristic
Depends: R (>= 2.12.0), hypergeo
Maintainer: Bozidar V. Popovic , Saralees Nadarajah , Miroslav M. Ristic
Description: Computing Continuous Distributions Obtained by Compounding a Continuous and a Discrete Distribution
License: GPL (>= 2)
Packaged: 2012-01-03 17:31:19 UTC; Miki
Repository: CRAN
Date/Publication: 2012-01-04 07:30:19

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New package ChoiceModelR with initial version 1.0
Package: ChoiceModelR
Type: Package
Title: Choice Modeling in R
Version: 1.0
Date: 2011-11-08
Author: Ryan Sermas , assisted by John V. Colias
Author@R: c(person("Ryan", "Sermas", role = "aut", email = "DecisionAnalystR@decisionanalyst.com), person("John", "Colias", "V", role = "ctb", email = "DecisionAnalystR@decisionanlayst.com"), person("Decision Analyst, Inc.", role = "cph"))
Maintainer: Ryan Sermas
Suggests: bayesm, MASS, lattice, Matrix
Description: Implements an MCMC algorithm to estimate a hierarchical multinomial logit model with a normal heterogeneity distribution. The algorithm uses a hybrid Gibbs Sampler with a random walk metropolis step for the MNL coefficients for each unit. Dependent variable may be discrete or continuous. Independent variables may be discrete or continuous with optional order constraints. Means of the distribution of heterogeneity can optionally be modeled as a linear function of unit characteristics variables.
License: GPL (>= 3)
Copyright: (C) 2011 Decision Analyst, Inc. (ChoiceModelR is a trademark of Decision Analyst, Inc.)
URL: http://www.decisionanalyst.com
LazyLoad: yes
Packaged: 2012-01-03 19:39:08 UTC; CORP\jcolias
Depends: R (>= 2.10)
Repository: CRAN
Date/Publication: 2012-01-04 07:34:54

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Tue, 03 Jan 2012

New package dcens with initial version 1.0
Package: dcens
Type: Package
Title: Doubly censoring estimation
Version: 1.0
Date: 2011-07-31
Author: O. Julià, G. Gómez, C. Serrat and J. Cortés
Maintainer: Carles Serrat and Jorge Cortés
Description: This R package implements the doubly censoring estimation methodology described at 'Simultaneous marginal survival estimators when doubly censored data is present' (O. Julià and G. Gómez, 2011).
License: GPL (>= 2)
Repository: CRAN
LazyLoad: yes
Encoding: latin1
Packaged: 2011-08-16 17:10:22 UTC; Usuario
Date/Publication: 2011-08-17 05:30:16

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New package soilDB with initial version 0.3-2
Package: soilDB
Type: Package
Title: Soil Database Interface
Version: 0.3-2
Date: 2011-12-30
Packaged: 2011-12-31 22:20:34 UTC; rforge
Author: D.E. Beaudette and J.M. Skovlin
Maintainer: D.E. Beaudette
Description: A collection of functions for reading data from USDA-NCSS soil databases.
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 2.9.0), methods, plyr, Hmisc, RODBC, RCurl, XML, SSOAP, aqp
Suggests: rgdal
Repository: CRAN
Repository/R-Forge/Project: aqp
Repository/R-Forge/Revision: 431
Date/Publication: 2012-01-03 08:22:15

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New package GOGANPA with initial version 1.0
Package: GOGANPA
Type: Package
Title: GO-Functional-Network-based Gene-Set-Analysis
Version: 1.0
Date: 2011-12-30
Author: Billy Chang
Maintainer: Billy Chang
Description: Accounting for genes' functional-non-equivalence within pathways in classical Gene-set-analysis.
Depends: R (>= 2.10), GANPA, WGCNA
Suggests: GANPA, WGCNA, GANPAdata
License: GPL-2
Packaged: 2012-01-02 17:37:23 UTC; billyhw
Repository: CRAN
Date/Publication: 2012-01-03 07:44:00

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New package frt with initial version 0.1
Package: frt
Version: 0.1
Date: 2011-12-31
Title: Full Randomization Test
Author: Giangiacomo Bravo , Lucia Tamburino .
Maintainer: Giangiacomo Bravo
Description: Perform full randomization tests.
License: GPL (>= 2)
URL: http://www.r-project.org
Packaged: 2011-12-31 06:11:44 UTC; BRAVO
Repository: CRAN
Date/Publication: 2012-01-03 08:00:08

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Sat, 31 Dec 2011

New package abd with initial version 0.1-22
Package: abd
Type: Package
Title: The Analysis of Biological Data
Version: 0.1-22
Date: 2011-9-12
Author: Kevin M. Middleton , Randall Pruim
Maintainer: Kevin M. Middleton
Depends: R (>= 2.10), nlme, lattice, grid
Suggests: boot, car, ggplot2, plyr, HH, vcd, Hmisc
Description: The abd package contains data sets and sample code for The Analysis of Biological Data by Michael Whitlock and Dolph Schluter (2009; Roberts & Company Publishers).
License: GPL-2
LazyLoad: yes
LazyData: yes
Encoding: UTF-8
Repository: CRAN
Date/Publication: 2011-09-14 15:29:03

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New package abind with initial version 1.4-0
Package: abind
Version: 1.4-0
Date: 2011-07-17
Title: Combine multi-dimensional arrays
Author: Tony Plate and Richard Heiberger
Maintainer: Tony Plate
Description: Combine multi-dimensional arrays into a single array. This is a generalization of cbind and rbind. Works with vectors, matrices, and higher-dimensional arrays. Also provides functions adrop, asub, and afill for manipulating, extracting and replacing data in arrays.
Depends: R (>= 1.5.0)
License: LGPL (>= 2)
Packaged: 2011-11-26 15:49:41 UTC; tap
Repository: CRAN
Date/Publication: 2011-11-27 09:14:09

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New package abcdeFBA with initial version 0.1
Package: abcdeFBA
Type: Package
Title: ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package.
Version: 0.1
Date: 2010-09-16
Author: Abhilash Gangadharan, Neha Rohatgi
Maintainer: Abhilash Gangadharan
Depends: Rglpk,rgl,corrplot,lattice,R (>= 2.10)
Suggests: LIM
Description: Functions for Constraint Based Simulation using Flux Balance Analysis and informative analysis of the data generated during simulation.
License: GPL-2
Lazyload: yes
Packaged: 2011-11-05 07:23:27 UTC; Abhilash
Repository: CRAN
Date/Publication: 2011-11-05 10:48:08

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New package abc with initial version 1.4
Package: abc
Version: 1.4
Date: 2011-09-02
Title: Tools for Approximate Bayesian Computation (ABC)
Author: Katalin Csillery, Michael Blum and Olivier Francois
Maintainer: Katalin Csillery and Michael Blum
Depends: R (>= 2.10), MASS, nnet, quantreg, locfit
Description: The package implements several ABC algorithms for performing parameter estimation and model selection. Cross-validation tools are also available for measuring the accuracy of ABC estimates, and to calculate the misclassification probabilities of different models.
Repository: CRAN
License: GPL (>= 3)
Packaged: 2011-09-03 12:42:41 UTC; kcsillery
Date/Publication: 2011-09-04 05:18:45

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Fri, 30 Dec 2011

New package R2OpenBUGS with initial version 3.2-1.3
Package: R2OpenBUGS
Title: Running OpenBUGS from R
Date: 2011-12-20
Version: 3.2-1.3
Author: originally written as R2WinBUGS by Andrew Gelman ; changes and packaged by Sibylle Sturtz and Uwe Ligges . With considerable contributions by Gregor Gorjanc and Jouni Kerman . Adapted to R2OpenBUGS from R2WinBUGS by Neal Thomas.
Description: Using this package, it is possible to call a BUGS model, summarize inferences and convergence in a table and graph, and save the simulations in arrays for easy access in R.
Depends: R (>= 2.11.0)
Imports: coda (>= 0.11-0), boot
SystemRequirements: OpenBUGS (>= 3.2.1)
Maintainer: Neal Thomas
License: GPL-2
Packaged: 2011-12-23 14:18:25 UTC; ThomasN
Repository: CRAN
Date/Publication: 2011-12-30 12:44:22

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New package rFerns with initial version 0.1
Package: rFerns
Type: Package
Title: Random ferns classifier
Version: 0.1
Date: 2011-12-29
Author: Miron B. Kursa
Maintainer: Miron B. Kursa
Description: An R implementation of the random ferns classifier by Ozuysal et al., modified for generic classification problems and featuring OOB error approximation and importance measure.
License: GPL-3
Packaged: 2011-12-29 22:01:51 UTC; mbq
Repository: CRAN
Date/Publication: 2011-12-30 11:23:08

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New package NormalGamma with initial version 0.1.0
Package: NormalGamma
Type: Package
Title: Normal-gamma convolution model
Version: 0.1.0
Date: 2011-12-20
Author: S. Plancade and Y. Rozenholc
Maintainer: Sandra Plancade
Description: The functions proposed in this package compute the density of the sum of a gaussian and a gamma random variables, estimate the parameters and correct the noise effect in a gamma-signal and gaussian-noise model. This package has been used to implement the background correction method for Illumina microarray data presented in Plancade S., Rozenholc Y. and Lund E. (http://arxiv.org/abs/1112.4180).
License: GPL-2
Depends: optimx , histogram
Packaged: 2011-12-28 23:17:26 UTC; sandra
Repository: CRAN
Date/Publication: 2011-12-30 11:22:36

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New package mcbiopi with initial version 1.1.0
Package: mcbiopi
Title: Matrix Computation Based Identification Of Prime Implicants
Version: 1.1.0
Date: 2011-12-29
Author: Holger Schwender
Maintainer: Holger Schwender
Description: Computes the prime implicants or a minimal disjunctive normal form for a logic expression presented by a truth table or a logic tree. Has been particularly developed for logic expressions resulting from a logic regression analysis, i.e. logic expressions typically consisting of up to 16 literals, where the prime implicants are typically composed of a maximum of 4 or 5 literals.
License: LGPL (>= 2)
Packaged: 2011-12-29 01:52:01 UTC; schwender
Repository: CRAN
Date/Publication: 2011-12-30 11:23:02

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New package cin with initial version 0.1
Package: cin
Type: Package
Title: Causal Inference for Neuroscience
Version: 0.1
Date: 2011-12-28
Author: Xi (Rossi) LUO with contributions from Dylan Small, Chiang-shan Li, and Paul Rosenbaum
Maintainer: Xi (Rossi) LUO
Description: Many experiments in neuroscience involve randomized and fast stimulation while the continuous outcome measures respond at much slower time scale, for example event-related fMRI. This package provide valid statistical tools with causal interpretation under these challenging settings, without imposing model assumptions.
License: GPL-2
Packaged: 2011-12-28 18:46:30 UTC; xluo
Repository: CRAN
Date/Publication: 2011-12-30 11:22:46

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Tue, 27 Dec 2011

New package Ohmage with initial version 2.9
Package: Ohmage
Type: Package
Title: R Client for Mobilize/Andwellness server
Version: 2.9
Date: 2011-09-28
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
Description: R Client for Mobilize and Andwellness server. Implements basic R functions to call and process data.
License: GPL
Depends: RCurl, opencpu.encode, XML
Collate: 'increment.curlcount.R' 'loadtest.R' 'multifactor.R' 'oh.auth_token.R' 'oh.call.R' 'oh.campaign.create.R' 'oh.campaign.delete.R' 'oh.campaign.read.R' 'oh.class.create.R' 'oh.class.delete.R' 'oh.class.read.R' 'oh.class.update.R' 'oh.image.read.R' 'oh.login.R' 'oh.survey_response.read.R' 'oh.survey.upload.R' 'oh.user.auth.R' 'oh.user.create.R' 'oh.user.delete.R' 'oh.user.read.R' 'oh.user_stat.read.R' 'parse.date.R' 'parse.item.R' 'parse.prompt.R' 'parsevector.R' 'print.param.list.R' 'renewCurl.R' 'oh.logout.R' 'onAttach.R'
Packaged: 2011-12-27 06:26:32 UTC; jeroen
Repository: CRAN
Date/Publication: 2011-12-27 10:05:52

More information about Ohmage at CRAN
Path: /cran/new | permanent link

New package Mobilize with initial version 2.9
Package: Mobilize
Type: Package
Title: Mobilize plots and functions
Version: 2.9
Date: 2011-09-28
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
Description: Some canned plots and functions designed for the mobilize project. Designed to be called remotely.
License: GPL
Depends: Ohmage, ggplot2, reshape
Collate: 'bin.by.date.R' 'biplot.R' 'campaigndata.R' 'distributionplot.R' 'getpicture.R' 'geturl.R' 'gmapdata.R' 'keepalive.R' 'responseplot.R' 'scatterplot.R' 'sharedplot.R' 'sharedtimeplot.R' 'test.mobilze.R' 'timeplot.R' 'userplot.R'
Packaged: 2011-12-27 06:26:30 UTC; jeroen
Repository: CRAN
Date/Publication: 2011-12-27 10:05:51

More information about Mobilize at CRAN
Path: /cran/new | permanent link

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