New package WeightedPortTest with initial version 1.0
Package: WeightedPortTest
Type: Package
Title: Weighted Portmanteau Tests for Time Series Goodness-of-fit
Version: 1.0
Date: 2012-05-24
Author: Thomas J. Fisher and Colin M. Gallagher
Maintainer: Thomas J. Fisher
Description: This packages contains the Weighted Portmanteau Tests as described in "New Weighted Portmanteau Statistics for Time Series Goodness-of-Fit Testing' accepted for publication by the Journal of the American Statistical Association.
License: GPL (>= 3)
Packaged: 2012-05-24 05:14:15 UTC; tjfisher
Repository: CRAN
Date/Publication: 2012-05-24 06:24:13

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New package awsMethods with initial version 1.0-0
Package: awsMethods
Version: 1.0-0
Date: 2012-05-18
Title: Class and Methods definitions for packages aws, adimpro, fmri, dwi
Author: Joerg Polzehl
Maintainer: Joerg Polzehl
Depends: R (>= 2.14.0), methods
Description: The package defines method extract that in needed in several packages
License: GPL (>= 2)
Copyright: This package is Copyright (C) 2012 Weierstrass Institute for Applied Analysis and Stochastics.
URL: http://www.wias-berlin.de/projects/matheon_a3/
Packaged: 2012-05-18 11:04:48 UTC; polzehl
Repository: CRAN
Date/Publication: 2012-05-23 19:03:32

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New package NbClust with initial version 1.0
Package: NbClust
Type: Package
Title: An examination of indices for determining the number of clusters : NbClust Package
Version: 1.0
Date: 2012-05-01
Author: Malika Charrad and Nadia Ghazzali and Veronique Boiteau and Azam Niknafs
Maintainer: : Nadia Ghazzali
Description: This package provides most of the popular indices for cluster validation ready to use for the outputs produced by functions coming from the same package. It also proposes to user the best clustering scheme from the different results obtained by varying all combinations of number of clusters, distance measures, and clustering methods.
License: GPL-2
Packaged: 2012-05-23 14:26:58 UTC; CRSNG-INAL-3
Repository: CRAN
Date/Publication: 2012-05-23 16:21:05

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New package MetaPath with initial version 0.9
Package: MetaPath
Type: Package
Title: Perform the Meta-Analysis for Pathway Enrichment analysis (MAPE).
Version: 0.9
Date: 2011-05-20
Author: Kui Shen and Geroge Tseng
Maintainer: Kui Shen
Depends: R(>= 2.13.0),Biobase,AnnotationDbi,genefilter,GSEABase,limma,impute,qvalue
Description: This R package was implemented to perform the Meta-analysis for Pathway Enrichment (MAPE) methods introduced by Shen and Tseng (2010). It includes functions to automatically perform MAPE_G (integrating multiple studies at gene level), MAPE_P (integrating multiple studies at pathway level) and MAPE_I (a hybrid method integrating MAEP_G and MAPE_P methods). In the simulation and real data analyses in the paper, MAPE_G and MAPE_P have complementary advantages and detection power depending on the data structure. In general, the integrative form of MAPE_I is recommended to use. In the case that MAPE_G (or MAPE_P) detects almost none pathway, the integrative MAPE_I does not improve performance and MAPE_P (or MAPE_G) should be used. Reference: Shen, Kui, and George C Tseng. Meta-analysis for pathway enrichment analysis when combining multiple microarray studies.Bioinformatics (Oxford, England) 26, no. 10 (April 2010): 1316-1323. doi:10.1093/bioinformatics/btq148. http://www.ncbi.nlm.nih.gov/pubmed/20410053.
License: GPL (>= 2.0)
LazyLoad: yes
Packaged: 2012-05-22 19:18:14 UTC; kshen
Repository: CRAN
Date/Publication: 2012-05-23 07:37:18

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New package dataframe with initial version 2.5
Package: dataframe
Type: Package
Title: Fast data frames
Version: 2.5
Date: 2012-05-20
Author: Tim Hesterberg
Maintainer: Tim Hesterberg
Depends: R (>= 2.15.0)
Suggests: splus2R
Enhances: chron
Description: This contains versions of standard data frame functions in R, modified to avoid making extra copies of inputs. This is faster, particularly for large data.
License: GPL-2
LazyLoad: no
ByteCompile: yes
Packaged: 2012-05-21 20:28:04 UTC; rocket
Repository: CRAN
Date/Publication: 2012-05-22 05:54:50

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New package CpGassoc with initial version 1.00
Package: CpGassoc
Type: Package
Title: Association between Methylation and a phenotype of interest
Version: 1.00
Date: 2012-05-10
Author: Barfield, R., Conneely, K., Kilaru,V
Maintainer: R Barfield
Description: CpGassoc is designed to test for association between methylation at CpG sites across the genome and a phenotype of interest, adjusting for any relevant covariates. The package can perform standard analyses of large datasets very quickly with no need to impute the data. It can also handle mixed effects models with chip or batch entering the model as a random intercept. CpGassoc also includes tools to apply quality control filters, perform permutation tests, and create QQ plots, manhattan plots, and scatterplots for individual CpG sites.
Depends: R (>= 2.10), nlme
Suggests: qvalue
License: GPL (>= 2)
Packaged: 2012-05-21 19:11:49 UTC; rbarfield
Repository: CRAN
Date/Publication: 2012-05-22 05:54:48

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New package inlinedocs with initial version 1.9.1
Package: inlinedocs
Title: Convert inline comments to documentation
Type: Package
Version: 1.9.1
Date: 2012-04-11
Author: Inlinedocs development team
Maintainer: Toby Dylan Hocking
Description: Generates Rd files from R source code with comments, providing for quick, sustainable package development. The syntax keeps code and documentation close together, and is inspired by the Don't Repeat Yourself principle.
URL: http://inlinedocs.r-forge.r-project.org
Depends: methods, utils, R (>= 2.9)
License: GPL-3
LazyLoad: yes
Packaged: 2012-05-21 14:34:58 UTC; hocking
Repository: CRAN
Date/Publication: 2012-05-21 14:44:48

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New package ForeCA with initial version 0.0.1
Package: ForeCA
Type: Package
Title: ForeCA - Forecastable Component Analysis
Version: 0.0.1
Date: 2012-05-14
Author: Georg M. Goerg
Maintainer: Georg M. Goerg
URL: http://www.stat.cmu.edu/~gmg
Description: ForeCA is a new blind source separation (BSS) technique for temporally dependent signals. Contrary to PCA or ICA it explicitly searches for the best linear transformation that makes the obtained sources as ''forecastable'' as possible. The measure of forecastability Omega(x_t) is the entropy of the spectral density of the signal.
Depends: sapa
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-05-20 17:55:04 UTC; root
Repository: CRAN
Date/Publication: 2012-05-21 12:08:55

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New package Taxonstand with initial version 1.0
Package: Taxonstand
Type: Package
Title: Taxonomic standardization of plant species names
Version: 1.0
Date: 2012-03-21
Author: Luis Cayuela
Maintainer: Luis Cayuela
Description: Automated standardization of taxonomic names and removal of orthograhpic errors in plant species names using the The Plant List (TPL) website (www.theplantlist.org)
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-05-21 08:14:50 UTC; luis
Repository: CRAN
Date/Publication: 2012-05-21 08:36:09

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New package lmf with initial version 1.0
Package: lmf
Type: Package
Title: Functions for estimation and inference of selection in age-structured populations
Version: 1.0
Date: 2012-04-26
Author: Thomas Kvalnes
Maintainer: Thomas Kvalnes
Description: This R package provide methods for estimation and statistical inference on directional and fluctuating selection in age-structured populations.
License: GPL-2
LazyLoad: yes
Packaged: 2012-05-20 19:11:41 UTC; thomakva
Repository: CRAN
Date/Publication: 2012-05-20 20:30:32

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New package R2BayesX with initial version 0.1-1
Package: R2BayesX
Version: 0.1-1
Date: 2012-05-18
Title: Estimate Structured Additive Regression Models with BayesX
Authors@R: c(person(given = "Nikolaus", family = "Umlauf", role = c("aut", "cre"), email = "Nikolaus.Umlauf@uibk.ac.at"), person(given = "Thomas", family = "Kneib", role = "aut", email = "tkneib@uni-goettingen.de"), person(given = "Stefan", family = "Lang", role = "aut", email = "Stefan.Lang@uibk.ac.at"), person(given = "Achim", family = "Zeileis", role = "aut", email = "Achim.Zeileis@R-project.org"))
Description: An R interface to estimate structured additive regression (STAR) models with BayesX.
Depends: R (>= 2.13.0), akima, BayesX, BayesXsrc, colorspace, mgcv
Suggests: coda, maptools
License: GPL-2 | GPL-3
LazyLoad: yes
Packaged: 2012-05-18 14:10:04 UTC; c403131
Author: Nikolaus Umlauf [aut, cre], Thomas Kneib [aut], Stefan Lang [aut], Achim Zeileis [aut]
Maintainer: Nikolaus Umlauf
Repository: CRAN
Date/Publication: 2012-05-20 12:12:36

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New package BayesXsrc with initial version 2.1-1
Package: BayesXsrc
Version: 2.1-1
Date: 2012-05-18
Title: R Package Distribution of the BayesX C++ Sources
Authors@R: c(person(given = "Daniel", family = "Adler", role = c("aut", "cre"), email = "dadler@uni-goettingen.de"), person(given = "Thomas", family = "Kneib", role = "aut", email = "tkneib@uni-goettingen.de"), person(given = "Stefan", family = "Lang", role = "aut", email = "Stefan.Lang@uibk.ac.at"), person(given = "Nikolaus", family = "Umlauf", role = "aut", email = "Nikolaus.Umlauf@uibk.ac.at"), person(given = "Achim", family = "Zeileis", role = "aut", email = "Achim.Zeileis@R-project.org"))
Description: BayesX performs Bayesian inference in structured additive regression (STAR) models. The R package BayesXsrc provides the BayesX command line tool for easy installation. A convenient R interface is provided in package R2BayesX.
Depends: R (>= 2.7.0)
Suggests: R2BayesX
License: GPL-2 | GPL-3
URL: http://www.BayesX.org/
Packaged: 2012-05-18 10:03:20 UTC; c403131
Author: Daniel Adler [aut, cre], Thomas Kneib [aut], Stefan Lang [aut], Nikolaus Umlauf [aut], Achim Zeileis [aut]
Maintainer: Daniel Adler
Repository: CRAN
Date/Publication: 2012-05-20 12:12:34

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New package ImageMetrics with initial version 0.5
Package: ImageMetrics
Type: Package
Title: Facilitates image analysis for social scientists.
Version: 0.5
Date: 2012-05-18
Author: Solomon Messing
Depends: ReadImages, png, maps, tcltk, tkrplot, methods
SystemRequirements: tcltk
Maintainer: Solomon Messing
Description: Facilitates object selection within an image (e.g., to select a face for example), generates saturation and brightness metrics.
License: BSD
LazyLoad: yes
Packaged: 2012-05-19 16:01:05 UTC; user01
Repository: CRAN
Date/Publication: 2012-05-19 16:04:35

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New package PEIP with initial version 1.2
Package: PEIP
Type: Package
Title: Functions for Aster Book on Inverse Theory
Version: 1.2
Date: 2012-05-08
Depends: R (>= 2.12), Matrix, pracma, bvls, RSEIS, signal, MASS, nnls
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
Description: Several Functions for Aster Book on Inverse Theory. These functiuons are translations of MATLAB code developed by the authors to illustrate the concepts of Inverse theory as applied to geophysics.
License: GPL
Packaged: 2012-05-19 11:51:57 UTC; lees
Repository: CRAN
Date/Publication: 2012-05-19 12:35:47

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New package irtrees with initial version 0.1.0
Package: irtrees
Title: Estimation of Tree-Based Item Response Models
Version: 0.1.0
Date: 2012-05-14
Author: Ivailo Partchev and Paul De Boeck
Maintainer: Ivailo Partchev
Description: Helper functions and example data sets accompanying De Boeck, P. and Partchev, I. (2012) IRTrees: Tree-Based Item Response Models of the GLMM Family, Journal of Statistical Software - Code Snippets, 48(1), 1-28.
Depends: R(>= 2.10)
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Suggests: lme4
Packaged: 2012-05-14 12:57:16 UTC; zeileis
Repository: CRAN
Date/Publication: 2012-05-19 11:53:03

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New package RcmdrPlugin.SCDA with initial version 0.0
Package: RcmdrPlugin.SCDA
Type: Package
Title: Rcmdr plugin for designing and analyzing single-case experiments
Version: 0.0
Date: 2012-04-06
Author: Isis Bulte and Patrick Onghena
Maintainer: Isis Bulte
Depends: Rcmdr (>= 1.8-3), SCVA, SCRT, SCMA, tcltk, ReadImages
Description: This package provides a GUI for the SCVA, SCRT and SCMA packages. It is written as an Rcmdr plugin.
License: GPL (>= 2)
Packaged: 2012-05-19 08:13:34 UTC; u0053535
Repository: CRAN
Date/Publication: 2012-05-19 08:47:34

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New package mcmcse with initial version 0.1
Package: mcmcse
Type: Package
Title: Monte Carlo standard errors for MCMC
Version: 0.1
Date: 2012-05-14
Author: James M. Flegal
Maintainer: James M. Flegal
Description: Tools for calculating Monte Carlo standard errors (MCSE) in Markov chain Monte Carlo (MCMC) settings. This package considers standard errors for expectation and quantile estimators.
License: GPL
LazyLoad: yes
Packaged: 2012-05-18 16:17:25 UTC; jamesflegal
Repository: CRAN
Date/Publication: 2012-05-18 17:58:52

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New package HIest with initial version 1.0
Package: HIest
Type: Package
Title: Hybrid index estimation
Version: 1.0
Date: 2012-03-13
Author: Ben Fitzpatrick
Maintainer:
Description: Uses likelihood to estimate ancestry and heterozygosity. Evaluates simple hybrid classifications (parentals, F1, F2, backcrosses). Estimates genomic clines.
License: GPL (>= 3)
LazyLoad: yes
Packaged: 2012-05-18 18:34:55 UTC; benfitzpatrick
Repository: CRAN
Date/Publication: 2012-05-18 18:42:52

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New package simsem with initial version 0.2-0
Package: simsem
Type: Package
Title: SIMulated Structural Equation Modeling.
Version: 0.2-0
Date: 2012-05-17
Authors@R: c(person("Sunthud", "Pornprasertmanit", role = c("aut", "cre"), email = "psunthud@ku.edu"), person("Patrick", "Miller", role = c("aut", "cre"), email="patr1ckm@ku.edu"), person("Alexander", "Schoemann", role = c("aut", "cre"), email="schoemann@ku.edu") )
Author: Sunthud Pornprasertmanit , Patrick Miller , Alexander Schoemann
Maintainer: Sunthud Pornprasertmanit , Patrick Miller , Alexander Schoemann
Depends: R(>= 2.14), methods, lavaan, MASS
Suggests: parallel, Amelia, copula, quantreg, splines, foreign
Description: This package can be used to generate data using the structural equation modeling framework. This package is tailored to use those simulated data for various purposes, such as model fit evaluation, power analysis, or missing data handling and planning.
License: GPL (>= 2)
LazyLoad: yes
URL: https://github.com/simsem/simsem/wiki
Packaged: 2012-05-18 14:30:14 UTC; Sunthud
Repository: CRAN
Date/Publication: 2012-05-18 14:54:32

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New package semTools with initial version 0.1-0
Package: semTools
Type: Package
Title: Useful tools for structural equation modeling.
Version: 0.1-0
Date: 2012-05-17
Authors@R: c(person("Sunthud", "Pornprasertmanit", role = c("aut", "cre"), email = "psunthud@ku.edu"), person("Patrick", "Miller", role = c("aut", "cre"), email="patr1ckm@ku.edu"), person("Alexander", "Schoemann", role = c("aut", "cre"), email="schoemann@ku.edu"), person("Yves", "Rosseel", role = c("aut"), email="Yves.Rosseel@UGent.be") )
Author: Sunthud Pornprasertmanit , Patrick Miller , Alex Schoemann , Yves Rosseel
Maintainer: Sunthud Pornprasertmanit , Patrick Miller , Alex Schoemann
Depends: R(>= 2.14), MASS, lavaan, methods
Suggests: parallel, Amelia, mice
Description: This package provide useful tools for structural equation modeling analysis.
License: GPL (>= 2)
LazyLoad: yes
URL: https://github.com/simsem/semTools/wiki
Packaged: 2012-05-18 14:05:23 UTC; Sunthud
Repository: CRAN
Date/Publication: 2012-05-18 14:54:40

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New package gsmaRt with initial version 1.0
Package: gsmaRt
Type: Package
Title: Gene Set Microarray Testing
Version: 1.0
Date: 2011-05-06
Author: Stephan Artmann, Mathias Fuchs
Maintainer: Stephan Artmann
Depends: GEOquery,R2HTML,qvalue,rgl,scatterplot3d,xtable,limma
Description: combined miRNA- and mRNA-testing
License: GPL
LazyLoad: yes
Packaged: 2012-05-18 11:48:48 UTC; stephan
Repository: CRAN
Date/Publication: 2012-05-18 14:56:42

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New package MultiOrd with initial version 1.0
Package: MultiOrd
Type: Package
Title: Generation of multivariate ordinal variates.
Version: 1.0
Date: 2012-05-17
Author: Anup Amatya and Hakan Demirtas
Maintainer: Anup Amatya
Depends: mvtnorm, corpcor, Matrix, psych
Description: A method for multivariate ordinal data generation given marginal distributions and correlation based on the methodology proposed by Demirtas (2006).
License: GPL-2
LazyLoad: yes
Packaged: 2012-05-17 21:38:15 UTC; aamatya
Repository: CRAN
Date/Publication: 2012-05-18 13:36:54

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New package LeafAngle with initial version 1.1
Package: LeafAngle
Type: Package
Title: Fits, plots, and summarizes leaf angle distributions.
Version: 1.1
Date: 2012-05-18
Author: Remko Duursma
Maintainer:
Description: A leaf angle distribution is a special distribution that is defined between 0 and 90 degrees, and a number of distributions are used to characterize the leaf angle distribution in real plant canopies. This package includes methods to fit distributions to data, visualize the fit, and compare fits of nine different distributions.
License: GPL
LazyLoad: yes
Packaged: 2012-05-18 08:24:25 UTC; 30022860
Repository: CRAN
Date/Publication: 2012-05-18 08:46:20

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New package makeProject with initial version 1.0
Package: makeProject
Type: Package
Title: Creates an empty package framework for the LCFD format
Version: 1.0
Date: 2012-05-17
Author: Noah Silverman
Maintainer: Noah Silverman
Description: This package creates an empty framework of files and directories for the "Load, Clean, Func, Do" structure described by Josh Reich.
License: GPL-3
Packaged: 2012-05-18 06:42:44 UTC; noah
Repository: CRAN
Date/Publication: 2012-05-18 07:15:00

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New package spartan with initial version 1.0
Package: spartan
Type: Package
Title: Spartan (Simulation Parameter Analysis R Toolkit ApplicatioN)
Version: 1.0
Date: 2012-04-12
Author: Kieran Alden, Mark Read, Paul Andrews, Jon Timmis, Henrique Veiga-Fernandes, Mark Coles
Maintainer: Kieran Alden
Description: Computer simulations are becoming a popular technique to use in attempts to further our understanding of complex systems. This package provides code for four techniques described in available literature which aid the analysis of simulation results, at both single and multiple timepoints in the simulation run. The first technique addresses aleatory uncertainty in the system caused through inherent stochasticity, and determines the number of replicate runs necessary to generate a representative result. The second examines how robust asimulation is to parameter perturbation, through the use of a one-at-a-time parameter analysis technique. Thirdly, a latin hypercube based sensitivity analysis technique is included which can elucidate non-linear effects between parameters and indicate implications of epistemic uncertainty with reference to the system being modelled. Finally, a further sensitivity analysis technique, the extended Fourier Amplitude Sampling Test (eFAST) has been included to partition the variance in simulation results between input parameters, to determine the parameters which have a significant effect on simulation behaviour.
Suggests: lhs, gplots
License: GPL-2
Packaged: 2012-05-17 14:47:02 UTC; kieran
Repository: CRAN
Date/Publication: 2012-05-17 15:52:39

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New package DescribeDisplay with initial version 0.2.3
Package: DescribeDisplay
Version: 0.2.3
Title: R interface to DescribeDisplay (GGobi plugin)
Author: Hadley Wickham , Di Cook , Andreas Buja , Barret Schloerke
Depends: proto
Imports: grid, reshape2, ggplot2 (>= 0.9.1), plyr, scales, grid
Maintainer: Hadley Wickham
Description: Produce publication quality graphics from output of GGobi's describe display plugin
License: BSD
URL: http://www.ggobi.org/describe-display/
Collate: 'axis-geom.r' 'axis-grob.r' 'data.r' 'DescribeDisplay-package.r' 'ggplot-barchart.r' 'ggplot-parcoords.r' 'ggplot-scatmat.r' 'ggplot-timeseries.r' 'ggplot.r' 'plots.r' 'utils.r'
Packaged: 2012-05-17 15:12:15 UTC; hadley
Repository: CRAN
Date/Publication: 2012-05-17 16:03:21

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New package googlePublicData with initial version 0.12.05
Package: googlePublicData
Type: Package
Title: An R library to build Google's Public Data Explorer DSPL Metadata files
Version: 0.12.05
Date: 2012-05-15
Author: George Vega Yon
Maintainer: George Vega Yon
Description: package provides a collection of functions to set up Google Public Data Explorer data visualization tool with your own data, building automaticaly the corresponding DSPL (XML) metadata file jointly with the CSV files. All zipped up and ready to be published at Public Data Explorer.
Depends: R (>= 2.11.0), XML, utils, XLConnect
License: GPL (>= 3)
URL: http://code.google.com/p/rdspl/
LazyLoad: yes
Packaged: 2012-05-16 18:07:12 UTC; George
Repository: CRAN
Date/Publication: 2012-05-17 12:55:21

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New package simSummary with initial version 0.1.0
Package: simSummary
Title: Simulation summary
Description: simSummary is a small utility package which eases the process of summarizing simulation results. Simulations often produce intermediate results - some focal statistics that need to be summarized over several scenarios and many replications. This step is in principle easy, but tedious. The package simSummary fills this niche by providing a generic way of summarizing the focal statistics of simulations. The useR must provide properly structured input, holding focal statistics, and then the summary step can be performed with one line of code, calling the simSummary function.
Author: Gregor Gorjanc
Maintainer: Gregor Gorjanc
License: GPL (>= 2)
Version: 0.1.0
Depends: abind (>= 1.4-0), svUnit (>= 0.7-5)
Imports: gdata (>= 2.8.0)
Date: Check NEWS file for changes: news(package='simSummary')
Packaged: 2012-05-16 21:33:40 UTC; ggorjan
Repository: CRAN
Date/Publication: 2012-05-17 11:36:45

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New package fanc with initial version 0.17
Package: fanc
Type: Package
Title: Penalized likelihood factor analysis via non-concave penalty
Version: 0.17
Date: 2012-05-17
Author: Kei Hirose, Michio Yamamoto
Maintainer: Kei Hirose
Suggests: RGtk2
Description: This package computes the penalized maximum likelihood estimates of factor loadings and unique variances for various tuning parameters. The pathwise coordinate descent along with EM algorithm is used.
License: GPL (>= 2)
URL: http://www.keihirose.com/.
Packaged: 2012-05-17 01:21:56 UTC; hirosekei
Repository: CRAN
Date/Publication: 2012-05-17 07:55:01

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New package MissingDataGUI with initial version 0.1-3
Package: MissingDataGUI
Type: Package
Title: A GUI for Missing Data Exploration
Version: 0.1-3
Date: 2012-05-15
Author: Xiaoyue Cheng, Dianne Cook, Heike Hofmann
Maintainer: Xiaoyue Cheng
Description: This package provides numeric and graphical summaries for the missing values from both discrete and continuous variables. A variety of imputation methods are applied, including univariate imputations like fixed or random values, multiple imputations based on other packages, and imputations conditioned on a categorical variable.
Depends: gWidgetsRGtk2, Hmisc, norm, GGally, ggplot2
Imports: cairoDevice, grid, plyr, reshape2, reshape
License: GPL
Collate: 'MissingDataGUI-package.r' 'MissingDataGUI.r' 'WatchMissingValues.r' 'imputation.r' 'SingleImputation.r' 'zzz.r'
Packaged: 2012-05-17 03:11:05 UTC; xiaoyue
Repository: CRAN
Date/Publication: 2012-05-17 07:00:23

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New package CUMP with initial version 1.0
Package: CUMP
Type: Package
Title: Analyze Multivariate Phenotypes by Combining Univariate results
Version: 1.0
Date: 2012-03-08
Author: Xuan Liu and Qiong Yang
Maintainer: Xuan Liu
Description: Combining Univariate Association Test Results of Multiple Phenotypes for Detecting Pleiotropy
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-05-16 18:49:39 UTC; liuxuan
Repository: CRAN
Date/Publication: 2012-05-17 06:23:23

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New package bisectr with initial version 0.0.2
Package: bisectr
Title: Tools to find bad commits with git bisect
Version: 0.0.2
Author: Winston Chang
Maintainer: Winston Chang
Description: Tools to find bad commits with git bisect
Depends: R (>= 2.14)
Imports: devtools
License: GPL-2
Collate: 'bisect.r'
Packaged: 2012-05-16 19:06:34 UTC; winston
Repository: CRAN
Date/Publication: 2012-05-17 06:18:53

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New package igraphdata with initial version 0.1
Package: igraphdata
Version: 0.1
Date: 2012-05-11
Title: A collection of network data sets for the igraph package
Author: Gabor Csardi
Maintainer: Gabor Csardi
Depends: R (>= 2.10)
Suggests: igraph0, igraph
Description: A small collection of various network data sets, to use with the igraph package. They also work with the igraph0 package.
License: GPL (>= 2) + file LICENSE
URL: http://igraph.sourceforge.net
BugReports: http://bugs.launchpad.net/igraph
Packaged: 2012-05-15 04:00:29 UTC; gaborcsardi
Repository: CRAN
Date/Publication: 2012-05-16 13:43:43

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New package primer with initial version 1.0
Package: primer
Type: Package
Title: Functions and data for A Primer of Ecology with R
Version: 1.0
Date: 2012-05-16
Author: M Henry H Stevens
Maintainer: Hank Stevens
Depends: deSolve, lattice
Suggests: bbmle, gdata, nlme, vegan
Description: Functions are primarily functions for systems of ordinary differential equations, difference equations, and eigenanalysis and projection of demographic matrices; data are for examples.
License: GPL
LazyLoad: yes
Packaged: 2012-05-16 11:17:29 UTC; mhhs
Repository: CRAN
Date/Publication: 2012-05-16 11:49:09

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New package fishmove with initial version 0.0-1
Package: fishmove
Type: Package
Title: Prediction of Fish Movement Parameters
Version: 0.0-1
Packaged: 2012-05-16 08:12:10 UTC; Johannes Radinger
Date/Publication: 2012-05-16 10:48:44
Author: Johannes Radinger
Maintainer: Johannes Radinger
Description: Functions to predict fish movement parameters based on multiple regression and plotting leptokurtic fish dispersal kernels
License: GPL (>= 2)
Depends: ggplot2, plyr
LazyLoad: yes
LazyData: yes
URL:
Repository: CRAN

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New package MetaDE with initial version 1.0
Package: MetaDE
Type: Package
Title: Meta analysis of multiple microarray data
Version: 1.0
Date: 2012-03-27
Author: Jia Li and Xingbin Wang
Maintainer: Jia Li and Xingbin Wang
Depends: survival, impute,Biobase,combinat,tools
Description: A collection of functions for conducting genomic meta-analysis in R.
License: GPL-2
LazyLoad: yes
Packaged: 2012-05-12 13:22:33 UTC; xingbin
Repository: CRAN
Date/Publication: 2012-05-15 15:35:38

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New package ri with initial version 0.9
Package: ri
Type: Package
Title: ri: R package for performing randomization-based inference for experiments
Version: 0.9
Date: 2012-05-10
Author: Peter M. Aronow and Cyrus Samii
Maintainer: Cyrus Samii
Description: This package provides a set of tools for conducting exact or approximate randomization-based inference for experiments of arbitrary design. The primary functionality of the package is in the generation, manipulation and use of permutation matrices implied by given experimental designs. Among other features, the package facilitates estimation of average treatment effects, constant effects variance estimation, randomization inference for significance testing against sharp null hypotheses and visualization of data and results.
License: GPL (>= 2)
Packaged: 2012-05-14 16:15:27 UTC; peteraronow
Repository: CRAN
Date/Publication: 2012-05-15 06:44:09

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New package lava.tobit with initial version 0.4-6
Package: lava.tobit
Type: Package
Title: LVM with censored and binary outcomes
Version: 0.4-6
Date: 2012-04-24
Author: Klaus K. Holst
Maintainer: Klaus K. Holst
Description: lava plugin allowing combinations of left and right censored and binary outcomes
Keywords: twin model, structural equation model
Depends: R (>= 2.8.0), lava (>= 0.9-15), mvtnorm, survival
License: GPL-3
LazyLoad: yes
Packaged: 2012-05-13 13:52:05 UTC; klaus
Repository: CRAN
Date/Publication: 2012-05-15 06:38:12

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New package dma with initial version 1.1
Package: dma
Type: Package
Title: Dynamic model averaging
Version: 1.1
Date: 2012-05-13
Author: Tyler H. McCormick, Adrian Raftery, David Madigan
Maintainer: Tyler H. McCormick
Description: Dynamic model averaging for binary and continuous outcomes.
Suggests: MASS, mnormt
License: GPL-2
LazyLoad: yes
Packaged: 2012-05-15 04:27:28 UTC; tylermccormick
Repository: CRAN
Date/Publication: 2012-05-15 06:38:01

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New package mets with initial version 0.1-8
Package: mets
Type: Package
Title: Analysis of Multivariate Event Times
Version: 0.1-8
Date: 2012-05-13
Author: Klaus K. Holst and Thomas Scheike
Maintainer: Klaus K. Holst
Description: Implementation of various statistical models for multivariate event history data. Including multivariate cumulative incidence models, and bivariate random effects probit models (Liability models)
License: GPL (>= 2)
LazyLoad: yes
URL: http://r-forge.r-project.org/projects/lava/
Depends: Rcpp (>= 0.9.2), RcppArmadillo (>= 0.2.17), lava, mvtnorm, numDeriv, splines, timereg, ucminf, prodlim
LinkingTo: Rcpp, RcppArmadillo
Collate: 'biprobit.R' 'biprobit.strata.R' 'bpnd.R' 'bptwin.R' 'claytonakes.R' 'coef.biprobit.R' 'cumh.R' 'Dbvn.R' 'fastapprox.R' 'ipw.R' 'logLik.biprobit.R' 'mets-packages.R' 'npc.R' 'onload.R' 'plot.bptwin.R' 'plotcr.R' 'print.biprobit.R' 'print.summary.biprobit.R' 'score.biprobit.R' 'sim.bptwin.R' 'sim.clayton.oakes.R' 'summary.biprobit.R' 'summary.bptwin.R' 'uniprobit.R' 'utils.R' 'vcov.biprobit.R' 'bicomprisk.R' 'event.R' 'procformula.R' 'concordance-scripts.R' 'cor.R' 'twinlm.R' 'twinsim.R' 'methodstwinlm.R' 'sim-nordic-twin.R'
Packaged: 2012-05-14 16:33:21 UTC; klaus
Repository: CRAN
Date/Publication: 2012-05-14 18:20:32

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New package lava with initial version 1.0-5
Package: lava
Type: Package
Title: Linear Latent Variable Models
Version: 1.0-5
Date: 2012-05-13
Author: Klaus K. Holst
Maintainer: Klaus K. Holst
Description: Estimation and simulation of latent variable models
Keywords: latent variable model, structural equation model, likelihood inference
Depends: R (>= 2.10.0), graph, mvtnorm, numDeriv
Suggests: Rgraphviz, igraph, Matrix, gof (>= 0.8), foreach, survival
License: GPL-3
LazyLoad: yes
Collate: 'addattr.R' 'addvar.R' 'baptize.R' 'bootstrap.R' 'cancel.R' 'children.R' 'cluster.hook.R' 'coef.R' 'compare.R' 'confint.R' 'constrain.R' 'copy.R' 'correlation.R' 'covariance.R' 'deriv.R' 'distribution.R' 'effects.R' 'endogenous.R' 'estimate.multigroup.R' 'estimate.R' 'exogenous.R' 'finalize.R' 'fix.R' 'formula.R' 'functional.R' 'glmest.R' 'gof.R' 'graph2lvm.R' 'graph.R' 'heavytail.R' 'hooks.R' 'index.sem.R' 'information.R' 'iv.R' 'kill.R' 'labels.R' 'latent.R' 'lava-package.R' 'lisrel.R' 'logLik.R' 'logo.R' 'lvm.R' 'makemissing.R' 'manifest.R' 'matrices.R' 'measurement.R' 'merge.R' 'missingMLE.R' 'model.frame.R' 'modelPar.R' 'model.R' 'modelsearch.R' 'modelVar.R' 'moments.R' 'multigroup.R' 'nested.R' 'nodecolor.R' 'Objective.R' 'onload.R' 'optims.R' 'parameter.R' 'parpos.R' 'pars.R' 'partialcor.R' 'path.R' 'plot.R' 'predict.R' 'print.R' 'profile.R' 'randomslope.R' 'regression.R' 'reorder.R' 'residuals.R' 'score.R' 'sim.R' 'startvalues.R' 'subgraph.R' 'subset.R' 'summary.R' 'survival.R' 'utils.R' 'variances.R' 'vars.R' 'vcov.R' 'weight.R' 'equivalence.R'
Packaged: 2012-05-14 16:33:18 UTC; klaus
Repository: CRAN
Date/Publication: 2012-05-14 18:20:30

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New package SPSL with initial version 0.1-5
Package: SPSL
Type: Package
Version: 0.1-5
Date: 2012-05-14
Title: Site Percolation on Square Lattice (SPSL)
Author: Pavel V. Moskalev
Maintainer: Pavel V. Moskalev
Description: SPSL package provides functionality for labeling of percolation cluster on 2D & 3D square lattice with various lattice size, relative fraction of accessible sites (occupation probability), iso- & anisotropy, von Neumann & Moore d-neighborhood
Depends: R (>= 2.14.0)
Suggests: lattice
License: GPL-3
LazyLoad: yes
URL: http://www.r-project.org
Packaged: 2012-05-14 06:14:21 UTC; paule
Repository: CRAN
Date/Publication: 2012-05-14 15:58:38

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New package cumplyr with initial version 0.1-1
Package: cumplyr
Type: Package
Title: Extends ddply to allow calculation of cumulative quantities.
Version: 0.1-1
Date: 2012-05-02
Author: John Myles White
Maintainer: John Myles White
Description: Extends ddply to allow calculation of cumulative quantities.
License: MIT
Packaged: 2012-05-13 02:46:31 UTC; johnmyleswhite
Repository: CRAN
Date/Publication: 2012-05-14 15:58:39

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New package tm.plugin.factiva with initial version 1.0
Package: tm.plugin.factiva
Type: Package
Title: A plug-in for the tm text mining framework to import articles from Factiva
Version: 1.0
Date: 2012-05-14
Author@R: person("Milan", "Bouchet-Valat", email="nalimilan@club.fr", role=c("aut", "cre"))
Author: Milan Bouchet-Valat
Maintainer: Milan Bouchet-Valat
Enhances: tm (>= 0.5)
Imports: tm (>= 0.5), XML
Description: This package provides a tm Source to create corpora from articles exported from the Dow Jones Factiva content provider as XML files.
License: GPL (>= 2)
URL: https://r-forge.r-project.org/projects/rcmdr-tms/
BugReports: https://r-forge.r-project.org/tracker/?group_id=1179
Packaged: 2012-05-14 13:54:33 UTC; milan
Repository: CRAN
Date/Publication: 2012-05-14 15:04:26

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New package pgnorm with initial version 1.1
Package: pgnorm
Type: Package
Title: The p-generalized normal distribution
Version: 1.1
Date: 2012-05-10
Author: Steve Kalke
Maintainer:
Description: Evaluation of the pdf and the cdf of the univariate p-generalized normal distribution. Sampling from the p-generalized normal distribution using either the p-generalized polar method, the p-generalized rejecting polar method, the Monty Python method, the Ziggurat method or the method of Nardon and Pianca. The package also includes routines for the simulation of the bivariate, p-generalized uniform distribution on the p-generalized unit circle and the simulation of the corresponding angular distribution.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-05-14 07:14:44 UTC; skadmin
Repository: CRAN
Date/Publication: 2012-05-14 09:43:11

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New package BCEA with initial version 1.0
Package: BCEA
Type: Package
Title: Bayesian Cost Effectiveness Analysis
Version: 1.0
Date: 2012-04-27
Author: Gianluca Baio
Maintainer: Gianluca Baio
Suggests: MASS
Description: Produces an economic evaluation of a Bayesian model in the form of MCMC simulations. Given suitable variables of cost and effectiveness / utility for two or more interventions, BCEA computes the most cost-effective alternative and produces graphical summaries and probabilistic sensitivity analysis
License: GPL (>= 2)
Packaged: 2012-05-13 10:23:37 UTC; gianluca
Repository: CRAN
Date/Publication: 2012-05-13 14:49:30

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New package TextRegression with initial version 0.1-3
Package: TextRegression
Type: Package
Title: Predict continuous valued outputs associated with text documents.
Version: 0.1-3
Date: 2012-05-12
Author: John Myles White
Maintainer: John Myles White
Description: Predict continuous valued outputs associated with text documents. The input corpus of text documents is transformed into a document-term matrix (DTM) and then a regularized linear regression is fit that uses this matrix as predictors to predict the continuous valued output. The corpus's terms, coefficients for all terms and an estimate of the model's predictive power are returned in a list.
License: Artistic-2.0
LazyLoad: yes
Suggests: testthat
Depends: tm, Matrix, glmnet, plyr
Collate: 'dtm.to.Matrix.R' 'help.R' 'regress.text.R'
Packaged: 2012-05-13 03:24:03 UTC; johnmyleswhite
Repository: CRAN
Date/Publication: 2012-05-13 08:35:21

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New package SightabilityModel with initial version 1.0
Package: SightabilityModel
Type: Package
Title: Wildlife Sightability Modeling
Version: 1.0
Date: 2012-05-12
Author: John Fieberg
Maintainer: John Fieberg
Description: Uses logistic regression to model the probability of detection as a function of covariates. This model is then used with observational survey data to estimate population size, while accounting for uncertain detection. See Steinhorst and Samuel (1989).
License: GPL-2
LazyLoad: yes
Packaged: 2012-05-11 19:03:23 UTC; Jofieber
Repository: CRAN
Date/Publication: 2012-05-12 15:13:56

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New package polywog with initial version 0.1-0
Package: polywog
Title: Bootstrapped Basis Regression with Oracle Model Selection
Version: 0.1-0
Date: 2012-05-11
Author: Brenton Kenkel and Curtis S. Signorino
Maintainer: Brenton Kenkel
Description: Routines for flexible functional form estimation via basis regression, with model selection via the adaptive LASSO or SCAD to prevent overfitting.
License: GPL (>= 2)
Depends: glmnet (>= 1.5.1), ncvreg, Formula, Matrix
Imports: stringr, games, car
Suggests: foreach, lattice, rgl
Collate: 'helpers.r' 'fn_pred.r' 'fn_plot.r' 'fn_poly.r' 'polywog.r'
Packaged: 2012-05-11 20:58:30 UTC; brenton
Repository: CRAN
Date/Publication: 2012-05-12 15:38:30

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New package SKAT with initial version 0.75
Package: SKAT
Type: Package
Title: SNP-set (Sequence) Kernel Association Test
Version: 0.75
Date: 2011-05-11
Author: Seunggeun Lee, Larisa Miropolsky and Micheal Wu
Maintainer: Seunggeun (Shawn) Lee
Description: Kernel based SNP set test
License: GPL (>= 2)
Depends: R (>= 2.13.0)
Packaged: 2012-05-11 15:13:23 UTC; seunggeun
Repository: CRAN
Date/Publication: 2012-05-11 17:45:50

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New package RTDAmeritrade with initial version 0.0.1
Package: RTDAmeritrade
Version: 0.0.1
Date: 2011-06-4
Title: RTDAmeritrade
Author: Theodore Van Rooy
Maintainer: Theodore Van Rooy
Depends: R (>= 2.9.1), xts, zoo, XML, RCurl, sfsmisc
Suggests: snow
Description: The package contains functions that can be used to interface with the TDAmeritrade API.
License: GPL (>= 2)
Packaged: 2012-05-10 22:31:23 UTC; greentheo
Repository: CRAN
Date/Publication: 2012-05-11 05:13:46

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New package rolasized with initial version 1.0
Package: rolasized
Type: Package
Title: Solarized colours in R
Version: 1.0
Date: 2012-05-03
Author: Christian Zang
Maintainer: Christian Zang
Depends: base
Description: Ethan Schoonover's solarized colour scheme for R (http://ethanschoonover.com/solarized)
License: MIT
LazyLoad: yes
Collate: 'rolasized.R'
Packaged: 2012-05-10 06:50:48 UTC; christian
Repository: CRAN
Date/Publication: 2012-05-10 09:48:37

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New package p2distance with initial version 1.0.1
Package: p2distance
Type: Package
Title: Welfare's Synthetic Indicator
Version: 1.0.1
Date: 2012-05-2
Author: A.J. Perez-Luque; R. Moreno; R. Perez-Perez and F.J. Bonet
Maintainer: A.J. Perez-Luque , R. Perez-Perez
Description: The welfare's synthetic indicator provides an ideal tool for measuring multi-dimensional concepts such as welfare, development, living standards, etc. It enables information from the various indicators to be aggregated into a single synthetic measure.
License: GPL
LazyLoad: yes
Packaged: 2012-05-09 17:28:56 UTC; rperez
Repository: CRAN
Date/Publication: 2012-05-10 09:48:36

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New package marqLevAlg with initial version 1.0
Package: marqLevAlg
Type: Package
Title: An algorithm for least-squares curve fitting
Version: 1.0
Date: 2011-09-29
Author: D. Commenges , M. Prague and Amadou Diakite
Maintainer: Melanie Prague
Depends: R (>= 2.0.0)
LazyLoad: yes
Description: This algorithm provides a numerical solution to the problem of minimizing a function. This is more efficient than the Gauss-Newton-like algorithm when starting from points vey far from the final minimum. A new convergence test is implemented (RDM) in addition to the usual stopping criterion : stopping rule is when the gradients are small enough in the parameters metric (GH-1G).
License: GPL (>= 2.0)
URL: http://www.r-project.org
Encoding: latin1
Repository: CRAN
Packaged: 2012-05-09 10:10:12 UTC; ad6
Date/Publication: 2012-05-10 04:31:21

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New package BVS with initial version 4.12.0
Package: BVS
Type: Package
Title: Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies
Author: Melanie Quintana
Maintainer: Melanie Quintana
Description: The functions in this package focus on analyzing case-control association studies involving a group of genetic variants. In particular, we are interested in modeling the outcome variable as a function of a multivariate genetic profile using Bayesian model uncertainty and variable selection techniques. The package incorporates functions to analyze data sets involving common variants as well as extensions to model rare variants via the Bayesian Risk Index (BRI) as well as haplotypes. Finally, the package also allows the incorporation of external biological information to inform the marginal inclusion probabilities via the iBMU.
Version: 4.12.0
License: Unlimited
Depends: MASS, msm, haplo.stats, R (>= 2.14.0)
Packaged: 2012-05-09 16:00:55 UTC; maw27
Repository: CRAN
Date/Publication: 2012-05-10 04:14:52

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New package bigml with initial version 0.1-1
Package: bigml
Type: Package
Title: R bindings for the BigML API
Version: 0.1-1
Date: 2012-04-30
Authors@R: c(person("Justin", "Donaldson", role=c("aut","cre"), email = "donaldson@bigml.com"))
Description: The bigml package contains bindings for the BigML API. The package includes methods that provide straightforward access to basic API functionality, as well as methods that accommodate idiomatic R datatypes and concepts.
License: LGPL-3
Depends: RJSONIO, RCurl, plyr
Collate: 'bigml-internal.R' 'formEncodeURL.R' 'bigml-package.R' 'createDataset.R' 'createModel.R' 'createPrediction.R' 'createSource.R' 'getDataset.R' 'getModel.R' 'getPrediction.R' 'getSource.R' 'listDatasets.R' 'listModels.R' 'listSources.R' 'quickDataset.R' 'quickModel.R' 'quickPrediction.R' 'quickSource.R' 'setCredentials.R' 'deleteResource.R'
Packaged: 2012-05-09 19:09:29 UTC; justindonaldson
Author: Justin Donaldson [aut, cre]
Maintainer: Justin Donaldson
Repository: CRAN
Date/Publication: 2012-05-10 04:14:54

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New package qtutils with initial version 0.1-2
Package: qtutils
Version: 0.1-2
Title: Miscellaneous Qt-based utilities
Author: Deepayan Sarkar
Depends: R (>= 2.14.0), qtbase
Suggests: xtable
Imports: qtbase
LinkingTo: qtbase
Maintainer: Deepayan Sarkar
Description: Miscellaneous Qt-based tools for R
URL: http://qtinterfaces.r-forge.r-project.org
License: LGPL (>= 2)
Packaged: 2012-05-09 13:15:56 UTC; deepayan
Repository: CRAN
Date/Publication: 2012-05-09 13:25:44

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New package TCC with initial version 0.2
Package: TCC
Version: 0.2
Date: 2012-05-07
Title: TCC: tag count comparison package
Author: Koji Kadota, Tomoaki Nishiyama, Kentaro Shimizu
Maintainer: Tomoaki Nishiyama
Description: This package provides normalization method of tag count data by TMM-bayseq-TMM pipeline. Expected application includes RNA-seq, SAGE, ChIP-seq and a like.
Depends: R (>= 2.14.0), edgeR (>= 2.4.6), baySeq, NBPSeq
License: GPL-2
Copyright: Authors listed above
Packaged: 2012-05-08 14:12:28 UTC; tomoaki
Repository: CRAN
Date/Publication: 2012-05-09 04:06:52

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New package RCassandra with initial version 0.1-0
Package: RCassandra
Version: 0.1-0
Title: R/Cassandra interface
Author: Simon Urbanek
Maintainer: Simon Urbanek
Description: This packages provides a direct interface (without the use of Java) to the most basic functionality of Apache Cassanda such as login, updates and queries.
License: GPL-2
URL: http://www.rforge.net/RCassandra
Packaged: 2012-05-05 14:20:29 UTC; svnuser
Repository: CRAN
Date/Publication: 2012-05-09 04:06:50

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New package plmDE with initial version 1.0
Package: plmDE
Type: Package
Title: Additive partially linear models for differential gene expression analysis
Version: 1.0
Date: 2012-05-01
Author: Jonas Mueller
Maintainer: Jonas
Depends: R (>= 2.14.2), MASS, splines, limma, R.oo
Suggests: Biobase, edgeR, DESeq
Description: A set of tools for identifying genes whose differential expression is associated with measurements of other covariates on a continuous scale. These methods rely on generalized additive partially linear models which can be fitted efficiently using a B-spline basis approximation. Still under development: methods for interfacing with objects extending the eSet class and a function to pass linear models in edgeR and DEseq format.
License: GPL (>= 2)
Packaged: 2012-05-09 00:37:12 UTC; jonasmueller
Repository: CRAN
Date/Publication: 2012-05-09 04:06:58

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New package phia with initial version 0.0-2
Package: phia
Version: 0.0-2
Date: 2012-05-08
Title: Post-Hoc Interaction Analysis
Author: Helios De Rosario-Martinez
Maintainer: Helios De Rosario-Martinez
Description: Analysis of terms in linear and generalized linear models, on the basis of multiple comparisons of factor contrasts. Specially suited for the analysis of interaction terms.
Depends: car, graphics, stats
Imports: car
License: GPL (>= 3)
LazyData: yes
Packaged: 2012-05-08 17:56:41 UTC; helios
Repository: CRAN
Date/Publication: 2012-05-09 04:06:56

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New package Animal with initial version 1.04
Package: Animal
Type: Package
Title: Analyze time-coded animal behavior data
Version: 1.04
Date: 2012-05-08
Author: Matti Pastell
Maintainer: Matti Pastell
Description: The Animal package is a collection of functions for analyzing animal (including humans) behavior data originating from a variety of sources. The package has functions to analyze time coded behaviors from CowLog (open source software for coding behaviors from digital video) data files and observation files with similar format. Other features include hourly, daily, weekly and monthly summaries of time coded data, analysis of RIC (roughage intake system, Insentec automation) data files and labeling measurement data according to behavioral observations for e.g model building purposes.
License: GPL (>= 3)
LazyLoad: yes
Repository: CRAN
URL: http://mpastell.com/CowLog/
Packaged: 2012-05-09 04:37:59 UTC; mpastell
Date/Publication: 2012-05-09 06:35:53

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New package gsbDesign with initial version 0.95
Package: gsbDesign
Type: Package
Title: Group Sequential Bayes Design
Version: 0.95
Date: 2012-05-07
Author: Florian Gerber, Thomas Gsponer
Depends: gsDesign, lattice, grid
Maintainer:
Description: Group Sequential Operating Characteristics for Clinical, Bayesian two-arm Trials with known Sigma and Normal Endpoints.
License: GPL-3
LazyLoad: yes
Packaged: 2012-05-07 16:32:11 UTC; flow
Repository: CRAN
Date/Publication: 2012-05-08 14:52:25

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New package AGD with initial version 0.30
Package: AGD
Type: Package
Version: 0.30
Title: Analysis of Growth Data
Date: 2012-05-07
Author: Stef van Buuren
Maintainer: Stef van Buuren
Depends: R (>= 2.10.0), gamlss
Suggests:
Description: Tools for NIHES course EP18 'Analysis of Growth Data', May 22-23 2012, Rotterdam.
License: GPL-2 | GPL-3
LazyLoad: yes
LazyData: yes
URL: http://www.stefvanbuuren.nl; http://nihes.nl/courses/analysis-of-growth-data/
Packaged: 2012-05-06 21:33:58 UTC; stefvanbuuren
Repository: CRAN
Date/Publication: 2012-05-08 14:48:19

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New package SunterSampling with initial version 1.0
Package: SunterSampling
Type: Package
Title: Sunter's sampling design
Version: 1.0
Date: 2012-05-02
Author: Alessandro Barbiero, Giancarlo Manzi
Maintainer: alessandro.barbiero
Description: Functions for drawing samples according to Sunter's sampling design, and for computing first and second order inclusion probabilities
License: GPL
LazyLoad: yes
Packaged: 2012-05-03 20:10:14 UTC; Alessandro
Repository: CRAN
Date/Publication: 2012-05-08 10:00:09

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New package pcaPA with initial version 1.0
Package: pcaPA
Title: Parallel Analysis for ordinal and numeric data using polychoric and Pearson correlations with S3 classes.
Version: 1.0
Date: 2012-05-04
Author: Carlos A. Arias and Víctor H. Cervantes .
SystemRequirements: Gnu Scientific Library version >= 1.18
Maintainer: Carlos A. Arias
Depends: R (>= 2.14.1), polycor, ltm, stats, ggplot2, mc2d
Description: A set of functions to perform parallel analysis for principal components analysis intended mainly for large data sets. It performs a parallel analysis of continuous, ordered (including dichotomous/binary as a special case) or mixed type of data associated with a principal components analysis. Polychoric correlations among ordered variables, Pearson correlations among continuous variables and polyserial correlation between mixed type variables (one ordered and one continuous) are used. Whenever the use of polyserial or polychoric correlations yields a non positive definite correlation matrix, the resulting matrix is transformed into the nearest positive definite matrix. For details on the GSL installation in windows please visit the following link: http://wiki.rglab.org/index.php?title=Public:Installation_of_GSL_from_Windows_binary
License: GPL (>= 2)
Encoding: latin1
Packaged: 2012-05-06 01:57:28 UTC; herulor
Repository: CRAN
Date/Publication: 2012-05-08 04:07:04

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New package nullabor with initial version 0.2
Package: nullabor
Version: 0.2
Description: Generate null datasets and null plots with ease.
Title: Tools for graphical inference
Author: Hadley Wickham
Maintainer: Hadley Wickham
License: GPL
Imports: MASS, ggplot2, plyr
Suggests: reshape2
LazyData: true
Type: Package
LazyLoad: false
Collate: 'encryption.r' 'lal.r' 'method-dist.r' 'method-model.r' 'method-permute.r' 'protocols.r'
Packaged: 2012-05-07 21:30:28 UTC; hadley
Repository: CRAN
Date/Publication: 2012-05-08 04:07:03

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New package visualFields with initial version 0.2-1
Package: visualFields
Type: Package
Title: Statistical methods for visual fields
Version: 0.2-1
Date: 2012-05-04
Author: Ivan Marin-Franch , Paul H Artes
Maintainer: Ivan Marin-Franch
Authors@R: c( person( given = "Ivan", family = "Marin-Franch", role = c( "aut", "cre" ), email = "imarinfr@indiana.edu", comment = NULL ), person( given = "Paul H", family = "Artes", role = c( "aut", "cre" ), email = "paul@dal.ca", comment = NULL ), person( given = "Chaitanya", family = "Khadilkar", role = c( "ctb" ), email = "chaikhad@indiana.edu", comment = "developer" ), person( given = "Neil", family = "O'Leary", role = c( "ctb" ), email = "oleary.neil@gmail.com", comment = "PoPLR" ), person( given = "Richard", family = "Russell", role = c( "ctb" ), email = "Richard.Russell.1@city.ac.uk", comment = "xml2csv" ), person( given = "William H", family = "Swanson", role = c( "ctb" ), email = "wilswans@indiana.edu", comment = "normative values" ), person( given = "Mitchell", family = "Dul", role = c( "ctb" ), email = "mdul@sunyopt.edu", comment = "normative values" ), person( given = "Victor E", family = "Malinovsky", role = c( "ctb" ), email = "malinovs@indiana.edu", comment = "normative values" ) )
Depends: R (>= 2.10.0), stats, utils, gridBase, flip, matrixStats, Hmisc
LazyData: yes
Description: A collection of tools for analyzing the field of vision. It provides a framework for development and use of innovative methods for visualization, statistical analysis, and clinical interpretation of visual-field loss and its change over time. It is intended to be a tool for collaborative research.
License: GPL (>= 2.0)
Repository: CRAN
Repository/R-Forge/Project: visualfields
Repository/R-Forge/Revision: 6
Packaged: 2012-05-05 06:15:12 UTC; rforge
Date/Publication: 2012-05-06 14:01:45

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New package BayesLogit with initial version 0.1-0
Package: BayesLogit
Version: 0.1-0
Date: 2012-05-06
Depends: R (>= 2.14.0)
Title: Logistic Regression
Author: Nicolas Polson, James G. Scott, and Jesse Windle
Maintainer: Jesse Windle
Description: The BayesLogit package does posterior simulation for binary and multinomial logistic regression using the Polya-Gamma latent variable technique. This method is fully automatic, exact, and fast. A routine to efficiently sample from the Polya-Gamma class of distributions is included.
License: GPL (>= 3)
Packaged: 2012-05-06 13:49:06 UTC; jwindle
Repository: CRAN
Date/Publication: 2012-05-06 14:11:24

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New package httr with initial version 0.1
Package: httr
Type: Package
Title: Tools for working with URLs and HTTP
Version: 0.1
Author: Hadley Wickham
Maintainer: Hadley Wickham
Description: Provides useful tools for working with HTTP connections. Is a simplified wrapper built on top of RCurl. It is much much less configurable but because it only attempts to encompass the most common operations it is also much much simpler.
Imports: RCurl, stringr, digest
Suggests: rjson, XML, testthat, png, jpeg, Rook
License: MIT
Collate: 'authenticate.r' 'config.r' 'content.r' 'cookies.r' 'handle.r' 'headers.r' 'proxy.r' 'insensitive.r' 'request-bin.r' 'http--request.r' 'response.r' 'url.r' 'xml.r' 'verbose.r' 'handle-pool.r' 'handle-url.r' 'http-browse.r' 'http-delete.r' 'http-get.r' 'http-head.r' 'http-post.r' 'http-put.r' 'httr.r' 'timeout.r' 'utils.r' 'oauth-app.r' 'oauth-endpoint.r' 'oauth-listener.r' 'ouath-signature.r' 'oauth-token.r' 'url-query.r' 'http-patch.r' 'user-agent.r' 'upload-file.r'
Packaged: 2012-05-06 09:22:23 UTC; hadley
Repository: CRAN
Date/Publication: 2012-05-06 09:36:49

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New package scio with initial version 0.4.1
Package: scio
Title: Sparse Column-wise Inverse Operator
Version: 0.4.1
Author: Xi (Rossi) LUO and Weidong Liu
Maintainer: Xi (Rossi) LUO
Suggests: clime, lorec
Description: Sparse Column-wise Inverse Operator for estimating the inverse covariance matrix. Note that this is a preliminary version accompanying the arXiv paper (arXiv:1203.3896) in 2012. This version contains only the minimal set of functions for estimation, and other facilitating R functions, such as those for cross validation, will be added in future releases.
License: GPL-2
Packaged: 2012-04-23 14:50:27 UTC; xluo
Repository: CRAN
Date/Publication: 2012-05-06 06:58:02

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New package imputeYn with initial version 1.0
Package: imputeYn
Type: Package
Title: Imputing the last largest censored datum under weighted least squares
Version: 1.0
Date: 2012-05-05
Author: Hasinur Rahaman Khan and Ewart Shaw
Maintainer: Hasinur Rahaman Khan
Description: If Kaplan-Meier weights are involved in modeling, especially solving AFT model using weighted least squares method, the package gives alternative choices to the Efron's tail correction approach that brings estimates with less bias and more efficiency
Depends: emplik, mvtnorm, quadprog, survival
License: GPL-2
Packaged: 2012-05-05 11:51:11 UTC; hasinur
Repository: CRAN
Date/Publication: 2012-05-06 06:57:55

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New package mmm2 with initial version 1.0
Package: mmm2
Type: Package
Title: Multivariate marginal models with shared regression parameters
Version: 1.0
Date: 2012-04-22
Author: Ozgur Asar, Ozlem Ilk
Depends: gee
Maintainer: Ozgur Asar
Description: Fits multivariate marginal models with shared regression parameters for discrete and continuous responses
License: GPL (>= 2)
Packaged: 2012-04-22 08:20:17 UTC; Administrator
Repository: CRAN
Date/Publication: 2012-05-05 16:34:35

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New package ISBF with initial version 0.1
Package: ISBF
Type: Package
Title: Iterative Selection of Blocks of Features - ISBF
Version: 0.1
Date: 2011-10-13
Author: Pierre Alquier
Maintainer: Pierre Alquier
Description: Selection of features for sparse regression estimation (like the LASSO). Selection of blocks of features when the regression parameter is sparse and constant by blocks (like the Fused-LASSO). Application to cgh arrays. TEST VERSION, USE AT YOUR OWN RISK!
License: GPL
LazyLoad: yes
Packaged: 2012-05-05 09:21:03 UTC; alquier
Repository: CRAN
Date/Publication: 2012-05-05 11:26:00

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New package discreteMTP with initial version 0.1-2
Package: discreteMTP
Type: Package
Title: Multiple testing procedures for discrete test statistics
Version: 0.1-2
Date: 2012-05-04
Authors@R: c(person("Ruth", "Heller", role = "aut"), person("Hadas", "Gur", role = "aut"), person("Shay", "Yaacoby", role = c("aut","cre"),email = "shay66@gmail.com"))
Description: Multiple testing procedures for discrete test statistics, that use the known discrete null distribution of the p-values for simultaneous inference.
License: GPL (>= 2)
URL: http://www.math.tau.ac.il/~ruheller/
Packaged: 2012-05-04 15:01:51 UTC; Shay
Author: Ruth Heller [aut], Hadas Gur [aut], Shay Yaacoby [aut, cre]
Maintainer: Shay Yaacoby
Repository: CRAN
Date/Publication: 2012-05-05 09:25:07

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New package varcompci with initial version 1.0.1
Package: varcompci
Type: Package
Title: VARCOMPCI: A Package for Computation of Confidence Intervals for Variance Components of Mixed Models in R.
Version: 1.0.1
Date: 2011-02-14
Author: Civit, S., Vilardell, M., Hess, A., Matthew, Z., Ge, Y., Caballe, A.
Maintainer: Sergi Civit
Description: This package compute confidence intervals on individual variances for any balanced mixed model, involving five or fewer factors according to Burdick and Graybill (1992) methodology. The package would fit a saturated model to the data (main effect and interaction terms of all orders) providing an ANOVA model with Expected Mean Squares (type III) by using the (Bennett and Franklin 1954) algorithm. The output will include: a table showing the confidence interval (CI) and estimate of each covariance parameter, as well as the method used to compute the CI, the Expected Mean Square, an ANOVA table showing the degrees of freedom (df), sums of squares (SS), mean squares (MS), F statistic, and finally AIC and BIC measures.
License: GPL (>= 2)
LazyLoad: yes
Depends: methods
Packaged: 2012-05-04 14:49:07 UTC; adri
Repository: CRAN
Date/Publication: 2012-05-05 06:18:32

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New package pathClass with initial version 0.9.3
Package: pathClass
Type: Package
Title: Classification using biological pathways as prior knowledge
Version: 0.9.3
Date: 2012-04-29
Author: Marc Johannes
Maintainer: Marc Johannes
Description: pathClass is a collection of classification methods that use information about feature connectivity in a biological network as an additional source of information. This additional knowledge is incorporated into the classification a priori. Several authors have shown that this approach significantly increases the classification performance.
Depends: R (>= 2.10), svmpath, kernlab, affy, Biobase, ROCR, igraph, lpSolve
Enhances: multicore
Suggests: hu6800.db, golubEsets
License: GPL (>= 2)
LazyLoad: yes
Collate: 'CrossValidation.R' 'GeneRank.R' 'GraphSVM.R' 'networkBasedSVM.R' 'PathwayMethods.R' 'RecursiveFeatureElimination.R' 'RRFE.R' 'SpanBound.R' 'SVMs.R'
Packaged: 2012-04-30 01:35:26 UTC; marc
Repository: CRAN
Date/Publication: 2012-05-05 07:23:04

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New package RSeed with initial version 0.1.31
Package: RSeed
Type: Package
Title: borenstein analysis
Version: 0.1.31
Date: 2012-04-25
Author: Claus Jonathan Fritzemeier
Maintainer: Claus Jonathan Fritzemeier
Description: an implementation of the analysis about seed components from borenstein 2008
License: GNU General Public License
LazyLoad: yes
Depends: R (>= 2.15.0), methods, sybil, RBGL, graph
Suggests: Rgraphviz
Collate: RSeed-class.R borenstein.R
Packaged: 2012-04-25 17:09:16 UTC; jonathan
Repository: CRAN
Date/Publication: 2012-05-04 09:56:00

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New package crrstep with initial version 2012-5.3
Package: crrstep
Type: Package
Title: Stepwise covariate selection for the Fine & Gray competing risks regression model
Version: 2012-5.3
Date: 2012-05-03
Author: Ravi Varadhan & Deborah Kuk
Maintainer: Ravi Varadhan
Description: Performs forward and backwards stepwise regression for the Proportional subdistribution hazards model in competing risks (Fine & Gray 1999). Procedure uses AIC, BIC and BICcr as selection criteria. BICcr has a penalty of k = log(n*), where n* is the number of primary events.
Depends: cmprsk
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-05-03 16:17:01 UTC; rvaradh1
Repository: CRAN
Date/Publication: 2012-05-04 05:41:07

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New package R.devices with initial version 2.1.1
Package: R.devices
Version: 2.1.1
Date: 2012-05-01
Title: Enhanced methods for handling graphical devices
Description: This package provides utility methods that enhance the existing graphical device functions already available in R for the purpose of simplify the creation of figure files of various image formats and much more.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
Depends: R (>= 2.10.0), R.utils (>= 1.12.1)
Imports: R.methodsS3 (>= 1.2.2), R.oo (>= 0.9.3), R.utils (>= 1.12.1)
Suggests: digest (>= 0.5.2)
License: LGPL (>= 2.1)
URL: http://www.braju.com/R/
LazyLoad: TRUE
Packaged: 2012-05-01 20:13:21 UTC; hb
Repository: CRAN
Date/Publication: 2012-05-03 06:23:30

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New package RcmdrPlugin.EBM with initial version 1.0-1
Package: RcmdrPlugin.EBM
Type: Package
Title: Rcmdr Evidence Based Medicine Plug-In package
Version: 1.0-1
Date: 2012-04-22
Author: Daniel-Corneliu Leucuta
Maintainer: Daniel-Corneliu Leucuta
Depends: R (>= 2.10), Rcmdr (>= 1.7.0), epiR, abind
Description: This package provides an Rcmdr plug-in for Evidence Based Medicine medical indicators calculations (Sensitivity, specificity, absolute risk reduction, relative risk, ...).
License: GPL (>= 2)
Log-Exceptions:
Models:
Packaged: 2012-04-30 20:45:56 UTC; danny
Repository: CRAN
Date/Publication: 2012-05-03 05:22:43

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New package mpoly with initial version 0.0.1
Package: mpoly
Type: Package
Title: Symbolic computation and more with multivariate polynomials
Version: 0.0.1
Date: 2012-05-01
Author: David Kahle
Maintainer: David Kahle
Description: mpoly allows for the symbolic manipulation of multivariate polynomials in a general and consistent way designed especially for sparse and super sparse polynomials. It also allows for basic differential calculus with multivariate polynomials and Grobner basis calculations from computational algebraic geometry.
Imports: stringr, rSymPy, rJython, rJava, rjson, partitions, plyr
License: MIT
Collate: 'as.function.mpoly.R' 'as.function.mpolyList.R' 'deriv.mpoly.R' 'grobner.R' 'is.mpoly.R' 'is.mpolyList.R' 'is.wholenumber.R' 'LCM.R' 'mp.R' 'mpoly.R' 'mpolyAdd.R' 'mpolyEqual.R' 'mpolyExp.R' 'mpolyList.R' 'mpolyListAdd.R' 'mpolyListProd.R' 'mpolyProd.R' 'print.mpoly.R' 'print.mpolyList.R' 'reorder.mpoly.R' 'terms.mpoly.R' 'vars.R' 'help.R' 'permutations.R' 'tuples.R' 'partitions.R' 'burst.R'
Packaged: 2012-05-02 00:00:42 UTC; david_kahle
Repository: CRAN
Date/Publication: 2012-05-02 13:23:46

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New package condmixt with initial version 1.0
Package: condmixt
Type: Package
Title: Conditional Density Estimation with Neural Network Conditional Mixtures
Version: 1.0
Date: 2012-04-06
Author: Julie Carreau
Maintainer: Julie Carreau
Description: Conditional density estimation with mixtures for heavy-tailed distributions
Depends: evd
License: GPL-2
LazyLoad: yes
Packaged: 2012-05-01 14:55:59 UTC; carreau
Repository: CRAN
Date/Publication: 2012-05-01 15:17:00

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New package Momocs with initial version 0.1
Package: Momocs
Type: Package
Title: Shape Analysis of Outlines
Version: 0.1
Date: 2012-05-01
Author: Vincent Bonhomme, Sandrine Picq, Julien Claude
Maintainer: Vincent Bonhomme
Description: Momocs is intended to ease and popularize shape analysis of outlines (especially using elliptical Fourier analysis). It mostly hinges on the functions developped in Morphometrics with R (Claude, 2008). From outline extraction of images and elliptical Fourier calculation to multivariate analysis and the visualization of transformations within the morphological space, Momocs provides a complete and convenient toolkit to specialists within every field that are, or may be, interested in morphological comparisons of outlines.
License: GPL (>= 2)
Depends: methods, sp, ReadImages
Collate: global.R Coo.R Nef.R
Packaged: 2012-05-01 05:47:55 UTC; vincent.bonhomme
Repository: CRAN
Date/Publication: 2012-05-01 08:05:48

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New package stellaR with initial version 0.1-0
Package: stellaR
Title: stellar evolution tracks and isochrones
Version: 0.1-0
Date: 2012-04-03
Authors@R: c(person("Matteo", "Dell'Omodarme", role = c("aut", "cre"), email = "mattdell@fastmail.fm"), person("Giada", "Valle", role = "aut"))
Description: A package to manage and display stellar tracks and isochrones from Pisa low-mass database. Includes tools for isochrones construction and tracks interpolation.
URL: The database is described at: http://astro.df.unipi.it/stellar-models/
LazyData: yes
License: GPL (>= 2)
Packaged: 2012-04-30 14:43:03 UTC; matt
Author: Matteo Dell'Omodarme [aut, cre], Giada Valle [aut]
Maintainer: Matteo Dell'Omodarme
Repository: CRAN
Date/Publication: 2012-04-30 19:14:30

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New package SemiParSampleSel with initial version 0.1
Package: SemiParSampleSel
Version: 0.1
Author: Giampiero Marra and Rosalba Radice
Maintainer: Giampiero Marra
Title: Semiparametric Sample Selection Modelling with Continuous Response
Description: Routine for fitting continuous response sample selection models with semiparametric predictors, including linear and nonlinear effects.
Depends: R (>= 2.14.0), magic, mgcv, trust, mvtnorm
LazyLoad: yes
License: GPL (>= 2)
URL: http://www.ucl.ac.uk/statistics/people/giampieromarra
Repository: CRAN
Date/Publication: 2012-04-30 10:05:54
Packaged: 2012-04-25 08:41:56 UTC; giampiero

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New package gglasso with initial version 1.0
Package: gglasso
Title: Group Lasso Penalized Learning Using A Unified BMD Algorithm
Version: 1.0
Date: 2012-4-23
Author: Yi Yang , Hui Zou
Maintainer: Yi Yang
Description: This package implements a unified algorithm, blockwise-majorization-decent (BMD), for efficiently computing the solution paths of the group-lasso penalized least squares, logistic regression, Huberized SVM and squared SVM.
License: GPL-2
URL: http://code.google.com/p/gglasso/
Packaged: 2012-04-30 02:13:55 UTC; emeryyi
Repository: CRAN
Date/Publication: 2012-04-30 05:42:32

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New package lqmm with initial version 1.0
Package: lqmm
Type: Package
Title: Linear Quantile Mixed Models
Version: 1.0
Date: 2012-04-29
Author: Marco Geraci
Maintainer: Marco Geraci
Depends: R (>= 2.12.0)
Description: Fit quantile regression models for independent and hierarchical data
License: GPL (>= 3)
URL: http://CRAN.R-project.org/package=lqmm
LazyLoad: yes
Packaged: 2012-04-29 15:25:37 UTC; Marco Geraci
Repository: CRAN
Date/Publication: 2012-04-29 20:58:52

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New package bpkde with initial version 1.0
Package: bpkde
Version: 1.0
Date: 2012-04-28
Title: Back Projected Kernel Density Estimation
Author: Kjell Konis , Victor Panaretos .
Maintainer: Kjell Konis
Depends: R (>= 2.15.0), mvtnorm, KernSmooth
Description: alpha version but now a little bit better
License: GPL-2
Packaged: 2012-04-28 18:38:23 UTC; kjell
Repository: CRAN
Date/Publication: 2012-04-29 20:58:33

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New package iDEMO with initial version 0.2-0
Package: iDEMO
Version: 0.2-0
Date: 2012-04-29
Title: integrated degradation models
Authors@R: c(person("Ya-Shan", "Cheng", role = c("aut", "cre"),email = "acidnoodle@hotmail.com"), person("Chien-Yu", "Peng", role = c("aut", "cre"),email = "chienyu@stat.sinica.edu.tw"))
Author: Ya-Shan Cheng, Chien-Yu Peng
Maintainer: Ya-Shan Cheng
Depends: R (>= 2.14.0),tcltk,tcltk2,gsl,ADGofTest
Description: The package iDEMO written in R and R GUI is a tool to build a linear degradation model which can simultaneously consider the unit-to-unit variation, time-dependent structure and measurement error in the degradation paths. Moreover, we provide the maximum likelihood estimates (MLEs) of the unknown parameters, mean-time-to-failure (MTTF) and qth quantile, and their corresponding confidence intervals.
License: GPL-2
URL: http://www.r-project.org, http://www.idemo.tw
Repository: CRAN
Packaged: 2012-04-29 14:19:38 UTC; LH530
Date/Publication: 2012-04-29 18:49:47

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New package BayesSingleSub with initial version 0.6
Package: BayesSingleSub
Type: Package
Title: Computation of Bayes factors for interrupted time-series designs
Version: 0.6
Date: 2012-3-28
Author: Richard D. Morey, Rivka de Vries
Maintainer: Richard D. Morey
Description: The BayesSingleSub package is a suite of functions for computing various Bayes factors for interrupted time-series, based on the models described in de Vries and Morey (submitted).
License: GPL-2
Imports: coda, mvtnorm, MCMCpack
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: bayesfactorpcl
Repository/R-Forge/Revision: 124
Packaged: 2012-04-27 10:15:06 UTC; rforge
Date/Publication: 2012-04-29 11:51:42

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New package GUniFrac with initial version 1.0
Package: GUniFrac
Type: Package
Title: Generalized UniFrac distances
Version: 1.0
Date: 2012-04-27
Author: Jun Chen
Maintainer: Jun Chen
Description: Generalized UniFrac distance for comparing microbial communities. Permutational multivariate analysis of variance using multiple distance matrices.
License: GPL-2
Depends: vegan, ape
Suggests: ade4
LazyLoad: yes
Packaged: 2012-04-28 15:38:21 UTC; chenjun
Repository: CRAN
Date/Publication: 2012-04-28 16:47:08

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New package QRM with initial version 0.4-7
Package: QRM
Version: 0.4-7
Date: 2012-04-27
Title: Provides R-language code to examine Quantitative Risk Management concepts
Author: Bernhard Pfaff
Maintainer: Bernhard Pfaff
Depends: R(>= 2.10.0), gsl, Matrix, mvtnorm, numDeriv, timeSeries
Description: This package is designed to accompany the book Quantitative Risk Management: Concepts, Techniques and Tools by Alexander J. McNeil, Rudiger Frey and Paul Embrechts.
LazyData: Yes
License: GPL (>= 2)
Packaged: 2012-04-27 17:55:42 UTC; bp
Repository: CRAN
Date/Publication: 2012-04-28 09:56:14

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New package risaac with initial version 0.1
Package: risaac
Type: Package
Title: A fast cryptographic random number generator using ISAAC by Robert Jenkins.
Version: 0.1
Date: 2012-04-25
Author: David L Gibbs
Maintainer: David L Gibbs
Description: Uses the ISAAC algorithm: http://burtleburtle.net/bob/rand/isaacafa.html
License: GPL-3
LazyLoad: yes
Packaged: 2012-04-27 19:21:39 UTC; dailyoperation
Repository: CRAN
Date/Publication: 2012-04-28 06:21:10

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New package CePa with initial version 0.1
Package: CePa
Type: Package
Title: Centrality-based pathway enrichment
Version: 0.1
Date: 2012-04-20
Author: Zuguang Gu
Maintainer: Zuguang Gu
Depends: R (>= 2.10.0), igraph
Description: Use pathway topology information to assign weight to pathway nodes.
LazyLoad: yes
URL: http://mcube.nju.edu.cn/jokergoo/
License: GPL (>= 2)
Packaged: 2012-04-28 06:01:37 UTC; Administrator
Repository: CRAN
Date/Publication: 2012-04-28 06:24:39

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New package biwavelet with initial version 0.1
Package: biwavelet
Type: Package
Title: Conduct univariate and bivariate wavelet analyses
Version: 0.1
Date: 2012-04-19
Author: Tarik C. Gouhier, Aslak Grinsted
Maintainer: Tarik C. Gouhier
Depends: R (>= 2.10), fields
Description: This is a port of the WTC MATLAB package written by Aslak Grinsted and the wavelet program written by Christopher Torrence and Gibert P. Compo. This package can be used to perform univariate and bivariate (cross-wavelet, wavelet coherence) wavelet analyses.
License: GPL (>= 2)
URL: http://biwavelet.r-forge.r-project.org
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: biwavelet
Repository/R-Forge/Revision: 10
Packaged: 2012-04-27 22:15:22 UTC; rforge
Date/Publication: 2012-04-28 05:18:10

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New package mmand with initial version 0.1.0
Package: mmand
Version: 0.1.0
Date: 2012-04-27
Title: Mathematical Morphology in Any Number of Dimensions
Author: Jon Clayden
Maintainer: Jon Clayden
Depends: R (>= 2.9.0)
Imports: reportr
Description: This package provides tools for performing mathematical morphology operations, such as erosion and dilation, on data of arbitrary dimensionality. It can also be used for smoothing and other image processing-style operations.
License: GPL-2
URL: https://github.com/jonclayden/mmand
Packaged: 2012-04-27 12:32:04 UTC; jon
Repository: CRAN
Date/Publication: 2012-04-27 13:44:58

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New package weightedKmeans with initial version 1.2.0
Package: weightedKmeans
Version: 1.2.0
Date: 2012-04-27
Title: Weighted KMeans Clustering
Author: Graham Williams, Joshua Z Huang, Xiaojun Chen, Qiang Wang, Longfei Xiao
Maintainer: Graham Williams
Depends: lattice, latticeExtra, clv
Description: Entropy weighted kmeans (ewkm) is a weighted subspace clustering algorithm that is well suited to very high dimensional data. Weights are calculated as the importance of a variable with regard to cluster membership. The feature group weighted kmenas (fgkm) extends this concept by grouping features and weighting the group in addition to weihgting individual features.
License: GPL (>= 3)
Copyright: 2011-2012 Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences
LazyLoad: yes
LazyData: yes
URL: http://www.siat.ac.cn
Packaged: 2012-04-26 20:11:09 UTC; gjw
Repository: CRAN
Date/Publication: 2012-04-27 06:28:29

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New package RfmriVC with initial version 1.0
Package: RfmriVC
Type: Package
Title: Varying stimulus coefficient fMRI models in R
Version: 1.0
Date: 2012-04-25
Author: Ludwig Bothmann, Stefanie Kalus
Maintainer: Stefanie Kalus
Description: A varying coefficient on the stimulus effect is introduced into the voxelwise fMRI regression model. By this the effects of the canonical hemodynamic response function are allowed to vary with another variable, like for example time or a vigilance parameter.
Depends: methods, splines, mvtnorm, mgcv, Rniftilib
License: GPL-2
Packaged: 2012-04-25 14:40:30 UTC; kalus
Repository: CRAN
Date/Publication: 2012-04-26 05:08:42

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New package MAMS with initial version 0.1
Package: MAMS
Type: Package
Title: Designing Multi-Arm Multi-Stage Studies
Version: 0.1
Author: Thomas Jaki and Dominic Magirr
Maintainer: Thomas Jaki
Depends: mvtnorm
Description: Designing multi-arm multi-stage studies with normal endpoints and known variance
License: GPL-2
Acknowledgement:
Packaged: 2012-04-25 14:42:00 UTC; jaki
Repository: CRAN
Date/Publication: 2012-04-25 20:42:39

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