CRANberries

CRANberries aggregates information about new and and updated packages from the
CRAN network for R available as this html version and a corresponding RSS feed.
Created and provided by Dirk Eddelbuettel.

Wed, 01 Sep 2010

New package longpower with initial version 1.0-1
Package: longpower
Type: Package
Title: Sample size calculations for longitudinal data
Version: 1.0-1
Date: 2010-08-23
Author: Michael C. Donohue, Anthony C. Gamst, Steven D. Edland
Maintainer: Michael C. Donohue
Description: The longpower package contains functions for computing power and sample size for linear models of longitudinal data based on the formula due to Liu and Liang (1997) and Diggle et al (2002). Either formula is expressed in terms of marginal model or Generalized Estimating Equations (GEE) parameters. This package contains functions which translate pilot mixed effect model parameters (e.g. random intercept and/or slope) into marginal model parameters so that the formulas of Diggle et al or Liu and Liang formula can be applied to produce sample size calculations for two sample longitudinal designs assuming known variance.
License: GPL (>= 2)
Depends: Matrix, lme4, methods
LazyLoad: yes
URL: http://math.ucsd.edu/~mdonohue
Packaged: 2010-09-01 18:47:57 UTC; mdonohue
Repository: CRAN
Date/Publication: 2010-09-01 20:05:12

More information about longpower at CRAN
Path: /cran/new | permanent link

New package clustsig with initial version 1.0
Package: clustsig
Version: 1.0
Date: 2010-09-01
Title: Significant Cluster Analysis
Author: Douglas Whitaker and Mary Christman
Maintainer: Douglas Whitaker
Depends: R (>= 2.10.0)
Description: A complimentary package for use with hclust; simprof tests to see which (if any) clusters are statistically different. The null hypothesis is that there is no a priori group structure. See Clarke, K.R., Somerfield, P.J., and Gorley R.N. 2008. Testing of null hypothesis in exploratory community analyses: similarity profiles and biota-environment linkage. J. Exp. Mar. Biol. Ecol. 366, 56-69.
License: GPL (>= 2)
URL: http://www.stat.ufl.edu/~whitaker/clustsig/
Packaged: 2010-09-01 18:00:46 UTC; douglas
Repository: CRAN
Date/Publication: 2010-09-01 18:19:49

More information about clustsig at CRAN
Path: /cran/new | permanent link

New package imguR with initial version 0.1.2
Package: imguR
Type: Package
Title: What the package does (short line)
Version: 0.1.2
Date: 2010-08-31
Author: Aaron Statham
Maintainer: Aaron Statham
Depends: XML, RCurl
Description: A package to share plots using the image hosting service imgur.com
License: GPL-3
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: imgur
Repository/R-Forge/Revision: 5
Date/Publication: 2010-09-01 06:44:38
Packaged: 2010-08-31 20:47:43 UTC; rforge

More information about imguR at CRAN
Path: /cran/new | permanent link

Tue, 31 Aug 2010

New package costat with initial version 1.1-1
Package: costat
Version: 1.1-1
Date: 10/6/2008
Title: Time series costationarity determination and tests of stationarity.
Author: Guy Nason and Alessandro Cardinali
Maintainer: Guy Nason
Depends: R (>= 2.0), wavethresh (>= 4.5)
Description: Contains functions that can determine whether a time series is second-order stationary or not (and hence evidence for locally stationarity). Given two non-stationary series (i.e. locally stationary series) this package can then discover time-varying linear combinations that are second-order stationary.
License: GPL-2
Packaged: 2010-08-31 16:12:50 UTC; magpn3
Repository: CRAN
Date/Publication: 2010-08-31 16:30:27

More information about costat at CRAN
Path: /cran/new | permanent link

New package CFL with initial version 0.1
Package: CFL
Type: Package
Title: Compensatory Fuzzy Logic
Version: 0.1
Date: 2010-08-17
Author: Pablo Michel Marin Ortega, Kornelius Rohmeyer
Maintainer: Pablo Michel Marin Ortega
Description: The main results on this project are: a package to analyze the data based on compensatory fuzzy logic algorithms and a reasoner for the compensatory fuzzy logic.
License: Unlimited
LazyLoad: yes
Suggests: RUnit
Packaged: 2010-08-31 09:41:16 UTC; pablo
Repository: CRAN
Date/Publication: 2010-08-31 16:02:56

More information about CFL at CRAN
Path: /cran/new | permanent link

New package rmac with initial version 0.9
Package: rmac
Type: Package
Title: calculate RMAC or FMAC agreement coefficients
Version: 0.9
Date: 2010-06-02
Author: Jennifer Kirk
Maintainer: Jennifer Kirk
Depends: boot
Description: Calculate Cohen's kappa, Scott's Pi, or the RMAC concordance correlation coefficient
License: GPL-2
Packaged: 2010-08-27 20:40:54 UTC; kirkjl
Repository: CRAN
Date/Publication: 2010-08-31 05:57:28

More information about rmac at CRAN
Path: /cran/new | permanent link

New package emg with initial version 1.0.1
Package: emg
Type: Package
Title: Exponentially Modified Gaussian (EMG) Distribution
Version: 1.0.1
Date: 2010-08-26
Author: Shawn Garbett
Maintainer: Shawn Garbett
Depends: R (>= 1.8.0), stats, stats4
Description: Provides basic distribution functions for a mixture model of a gaussian and exponential distribution.
License: GPL-2
LazyLoad: yes
Packaged: Mon Aug 30 08:18:45 2010; garbetsp
Repository: CRAN
Date/Publication: 2010-08-31 05:56:41

More information about emg at CRAN
Path: /cran/new | permanent link

Mon, 30 Aug 2010

New package LVQTools with initial version 1.0
Package: LVQTools
Type: Package
Title: Learning Vector Quantization Tools
Version: 1.0
Date: 2010-08-14
Author: Sander Kelders
Maintainer: Sander Kelders
Description: This package provides several LVQ algorithms along with different usage methods and output visualization.
Depends: methods
License: GPL-2
Packaged: Mon Aug 30 14:19:37 2010; sander
Repository: CRAN
Date/Publication: 2010-08-30 12:42:44

More information about LVQTools at CRAN
Path: /cran/new | permanent link

Sun, 29 Aug 2010

New package ipdmeta with initial version 1.0
Package: ipdmeta
Type: Package
Title: Mixed models for complete and partial IPD survival meta-analysis
Version: 1.0
Date: 2010-08-24
Author: S. Kovalchik
Maintainer: S. Kovalchik
Depends: survival, coxme, Matrix, phmm, metafor
Description: Mixed effects IPD meta-analysis, mixed data meta-analysis with patient level data and mulivariate survival estimates for aggregate studies
License: GPL-2
LazyLoad: yes
Packaged: 2010-08-28 07:53:45 UTC; skoval
Repository: CRAN
Date/Publication: 2010-08-29 07:13:12

More information about ipdmeta at CRAN
Path: /cran/new | permanent link

Sat, 28 Aug 2010

New package RcmdrPlugin.TextMining with initial version 0.1-0
Package: RcmdrPlugin.TextMining
Type: Package
Title: Rcommander plugin for "tm" package
Version: 0.1-0
Author: Dzemil Lusija
Maintainer: Dzemil Lusija
Depends: R (>= 2.11.1), tcltk, tm (>= 0.5-3), XML (>= 3.1-0), Snowball (>= 0.0-7),Rgraphviz (>= 1.26.0),proxy (>= 0.4-6), Rcmdr (>= 1.5-6)
Description: WARNING: This package is currently in beta status! This package provide GUI for demonstration of text mining concepts and "tm" package. It is implemented as a plugin to the R-Commander, which is based on tcl/tk. This set of dialogs can be accessed through the menu TextMining that is added to the R-Commander menus.
License: Artistic-2.0
Date: 2010-01-01
Packaged: 2010-08-27 21:39:27 UTC; deimosX
Repository: CRAN
Date/Publication: 2010-08-28 06:19:40

More information about RcmdrPlugin.TextMining at CRAN
Path: /cran/new | permanent link

Fri, 27 Aug 2010

New package mpt with initial version 0.1-0
Package: mpt
Version: 0.1-0
Date: 2010-08-27
Title: Multinomial Processing Tree (MPT) Models
Author: Florian Wickelmaier
Maintainer: Florian Wickelmaier
Description: Fitting and testing multinomial processing tree models, a class of statistical models for categorical data that involve latent parameters. These parameters are often interpreted as psychological processing variables (Batchelder & Riefer, 1999; Erdfelder et al., 2009; Riefer & Batchelder, 1988).
License: GPL (>= 2)
URL: http://www.r-project.org, http://homepages.uni-tuebingen.de/florian.wickelmaier
Packaged: 2010-08-27 10:47:07 UTC; siifw01
Repository: CRAN
Date/Publication: 2010-08-27 13:31:12

More information about mpt at CRAN
Path: /cran/new | permanent link

New package schwartz97 with initial version 0.0.1
Package: schwartz97
Type: Package
Version: 0.0.1
Date: 2009-06-29
Title: A package on the Schwartz two-factor commodity model
Author: Philipp Erb, Juri Hinz, David Luethi, Simon Otziger
Maintainer: David Luethi
LazyLoad: yes
LazyData: no
Depends: R(>= 2.8), FKF, mvtnorm, methods
Description: This package provides detailed functionality for working with the Schwartz 1997 two-factor commodity model. Essentially, it contains pricing formulas for futures and European options and the standard d/p/q/r functions for the distribution of the state variables and futures prices. In addition, the a parameter estimation procedure is contained in the package together with many utilities as filtering and plotting functionality.
License: GPL (>= 2)
Encoding: latin1
Packaged: 2010-08-27 07:34:15 UTC; otis
Repository: CRAN
Date/Publication: 2010-08-27 09:05:45

More information about schwartz97 at CRAN
Path: /cran/new | permanent link

New package RandForestGUI with initial version 1.0
Package: RandForestGUI
Title: RandForestGUI
Version: 1.0
Date: 2010-07-26
Author: Rory Michelland , Genevieve Grundmann
Maintainer: Rory Michelland
Description: A graphical user interface program to analyze microbial profiles (taxonomic sequences, fingerprints and microarrays) based on conditional inference random forest
Depends: party,randomForest,RColorBrewer,tcltk,tcltk2,MASS,vegan,Hmisc,clusterSim,rpart,car,sciplot
License: GPL-2
Packaged: 2010-08-26 15:29:46 UTC; rory
Repository: CRAN
Date/Publication: 2010-08-27 06:23:37

More information about RandForestGUI at CRAN
Path: /cran/new | permanent link

Thu, 26 Aug 2010

New package SMCP with initial version 1.1.1
Package: SMCP
Type: Package
Title: The fit for marglinalized linear model with SMCP penalties.
Version: 1.1.1
Date: 2010-04-28
Author: Jin (Gordon) Liu
Maintainer: Jin (Gordon) Liu
Description: A package containing functions that generate microarray data, fit the marginalized linear model with MCP and QA penalties and conduct cross-validation to select the tuning parameter.
License: GPL
Packaged: 2010-08-25 16:16:29 UTC; jliu20
Repository: CRAN
Date/Publication: 2010-08-26 06:42:48

More information about SMCP at CRAN
Path: /cran/new | permanent link

New package QuACN with initial version 1.0
Package: QuACN
Type: Package
Title: What the package does (short line)
Version: 1.0
Date: 2010-05-27
Author: Laurin Mueller
Maintainer: Laurin Mueller
Description: Quantitative Analysis of Complex Networks. This package offers a set of topological network measures to analyze complex Networks structurally.
License: LGPL
LazyLoad: yes
Depends: graph, RBGL, igraph, combinat, Rgraphviz
Packaged: 2010-08-25 14:40:23 UTC; laurin
Repository: CRAN
Date/Publication: 2010-08-26 06:42:34

More information about QuACN at CRAN
Path: /cran/new | permanent link

Wed, 25 Aug 2010

New package ProjectTemplate with initial version 0.1-1
Package: ProjectTemplate
Type: Package
Title: Automates the creation of new R statistical analysis projects.
Version: 0.1-1
Date: 2010-08-24
Author: John Myles White
Maintainer: John Myles White
Description: The ProjectTemplate package provides a single function create.project() that automatically builds a directory for a new R project with a clean directory structure and useful utility programs for automating the loading of project data. The hope is that standardized and automated data loading, automatic loading of best practice packages and useful nudges towards keeping cleanly organized code will improve the quality of R coding.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 2.7), reshape, plyr, stringr, ggplot2, testthat
Packaged: 2010-08-25 11:11:46 UTC; johnmyleswhite
Repository: CRAN
Date/Publication: 2010-08-25 12:50:31

More information about ProjectTemplate at CRAN
Path: /cran/new | permanent link

New package censReg with initial version 0.5-2
Package: censReg
Version: 0.5-2
Date: 2010/08/25
Title: Censored Regression (Tobit) Models
Author: Arne Henningsen
Maintainer: Arne Henningsen
Depends: R (>= 2.4.0), maxLik (>= 0.7-3)
Imports: glmmML (>= 0.81-6)
Suggests: plm, AER
Description: Estimation of censored regression (Tobit) models with cross-section and panel data
License: GPL (>= 2)
URL: http://CRAN.R-project.org, http://www.sampleSelection.org
Packaged: 2010-08-25 09:47:22 UTC; suapm095
Repository: CRAN
Date/Publication: 2010-08-25 10:07:34

More information about censReg at CRAN
Path: /cran/new | permanent link

New package orderbook with initial version 1.0
Package: orderbook
Type: Package
Title: Orderbook visualization/Charting software
Depends: R (>= 2.11.0), methods, graphics, lattice, hash, grid
Version: 1.0
Date: 2010-01-15
Author: Andrew Liu, Khanh Nguyen, Dave Kane
Maintainer: Andrew Liu
Description: Functions for visualizing and retrieving data for the state of an orderbook at a particular period in time.
License: GPL (>= 2)
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: limitob
Repository/R-Forge/Revision: 200
Date/Publication: 2010-08-25 09:37:41
Packaged: 2010-08-23 20:51:46 UTC; rforge

More information about orderbook at CRAN
Path: /cran/new | permanent link

New package ares with initial version 0.7.0
Package: ares
Version: 0.7.0
Date: 2010-08-24
Author: Washington Junger and Antonio Ponce de Leon
Maintainer: Washington Junger
Depends: R (>= 2.11.0),utils,stats,foreign,gam,splines,gplots
Title: Environment air pollution epidemiology: a library for time series analysis
Description: A toolbox for time series analyses using generalized additive models. This library includes routines for model estimation and diagnostics. Polynomial distributed lag models are also implemented.
License: GPL (>= 2)
Packaged: 2010-08-25 04:09:15 UTC; wjunger
Repository: CRAN
Date/Publication: 2010-08-25 09:37:21

More information about ares at CRAN
Path: /cran/new | permanent link

New package ecoreg with initial version 0.2
Package: ecoreg
Title: Ecological regression using aggregate and individual data
Version: 0.2
Date: 2010-08-24
Author: Christopher Jackson
Description: Estimating individual-level covariate-outcome associations using aggregate data ("ecological inference") or a combination of aggregate and individual-level data ("hierarchical related regression").
Maintainer: Christopher Jackson
License: GPL (>= 2)
Packaged: 2010-08-24 16:13:08 UTC; chris
Repository: CRAN
Date/Publication: 2010-08-25 09:37:28

More information about ecoreg at CRAN
Path: /cran/new | permanent link

Sun, 22 Aug 2010

New package TRIANGG with initial version 1.0
Package: TRIANGG
Type: Package
Title: General discrete triangular distribution
Version: 1.0
Date: 2010-08-18
Author: Tristan Senga Kiess\'{e}, Francial G. Libengu\'e, Silvio S. Zocchi, C\'{e}lestin C. Kokonendji
Maintainer: Tristan Senga Kiess\'{e}
Description: This is a package for general discrete triangular distributions which is an extension of the symmetric discrete triangular distributions
License: GPL-2
LazyLoad: yes
Packaged: Sat Aug 21 13:01:44 2010; root
Repository: CRAN
Date/Publication: 2010-08-22 07:57:44

More information about TRIANGG at CRAN
Path: /cran/new | permanent link

Fri, 20 Aug 2010

New package fmsb with initial version 0.11
Package: fmsb
Version: 0.11
Date: 2010/5/13
Title: Functions for medical statistics book with some demographic data
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
Depends: R (>= 2.2.0)
Description: Several utility functions for the book entitled "Practices of Medical and Health Data Analysis using R" (Pearson Education Japan, 2007)
License: GPL (>= 2)
URL: http://phi.med.gunma-u.ac.jp/msb/
Packaged: 2010-05-13 02:13:57 UTC; nminato
Repository: CRAN
Date/Publication: 2010-08-20 20:29:48

More information about fmsb at CRAN
Path: /cran/new | permanent link

New package mutossGUI with initial version 0.1-2
Package: mutossGUI
Version: 0.1-2
Date: 2010-08-16
Title: A graphical user interface for the MuToss Project
Author: Kornelius Rohmeyer
Maintainer: Kornelius Rohmeyer
Description: A graphical user interface for the MuToss Project
Depends: R (>= 2.8.0), rJava (>= 0.8-0), JavaGD (>= 0.5-2), plotrix, mutoss (>= 0.1-0), multcomp
SystemRequirements: Java (>= 5.0)
License: GPL
Packaged: 2010-08-19 20:22:56 UTC; kornel
Repository: CRAN
Date/Publication: 2010-08-20 04:39:07

More information about mutossGUI at CRAN
Path: /cran/new | permanent link

Thu, 19 Aug 2010

New package DCGL with initial version 1.0
Package: DCGL
Type: Package
Title: Differential Coexpression Analysis of Gene Expression Microarray Data
Version: 1.0
Date: 2010-08-18
Author: Bao-Hong Liu, Hui Yu
Maintainer: Bao-Hong Liu
Description: Functions for basic differential coexpression analyses: gene filtering, link filtering, DCG (Differentially-Coexpressed Gene) identification and DCL (Differentially-Coexpressed Links) identification.Two algorithms,named DCP and DCe, are provided for DCG-identification or DCG and DCL-identification.
Depends: R (>= 2.8.1), igraph
Imports: igraph
License: GPL (> 2)
LazyLoad: yes
Packaged: 2010-08-19 02:35:42 UTC; Bao-Hong Liu
Repository: CRAN
Date/Publication: 2010-08-19 05:39:47

More information about DCGL at CRAN
Path: /cran/new | permanent link

Wed, 18 Aug 2010

New package refund with initial version 0.1-0
Package: refund
Type: Package
Title: Regression with Functional Data
Version: 0.1-0
Date: 2010-08-16
Author: Philip Reiss
Maintainer: Lei Huang
Depends: R (>= 2.9.0), mgcv, fda, pls
Description: Functions for regression with functional data. The principal methods currently implemented are (1) functional-response/scalar-predictor regression by penalized OLS or GLS; and (2) functional principal component regression for scalar responses and functional predictors.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-08-18 15:09:59 UTC; huangl08
Repository: CRAN
Date/Publication: 2010-08-18 18:21:25

More information about refund at CRAN
Path: /cran/new | permanent link

New package soiltexture with initial version 1.0
Package: soiltexture
Version: 1.0
Date: 2010-08-16
Title: Functions for soil texture plot, classification and transformation
Author: Julien MOEYS
Maintainer: Julien MOEYS
Depends: R (>= 2.11.1), sp, MASS, drc
Suggests: plotrix
Description: "The Soil Texture Wizard" is a set of R functions designed to produce texture triangles (also called texture plots, texture diagrams, texture ternary plots), classify and transform soil textures data. These functions virtually allows to plot any soil texture triangle / classification into any triangle geometry (isosceles, right-angled triangles, etc.). This set of function is expected to be useful to people using soil textures data from different soil texture classification or different particle size systems. Several texture triangles are predefined: USDA; FAO (which is also the triangle for the soil map of Europe); Aisne (France); GEPPA (France); German triangle (Bodenkundliche Kartieranleitung 1994); Soil Survey of England and Wales (UK); Australian triangle; Belgian triangle; Canadian triangle; ISSS triangle; Romanian traingle. The Soil Texture Wizard is initially develloped from the functions 'soil.texture()' from the package 'plotrix' by Jim Lemon et al.
License: GPL (>= 3)
URL: http://soiltexture.r-forge.r-project.org/
Repository: CRAN
Repository/R-Forge/Project: soiltexture
Repository/R-Forge/Revision: 35
Date/Publication: 2010-08-18 14:35:47
Packaged: 2010-08-16 20:58:14 UTC; rforge

More information about soiltexture at CRAN
Path: /cran/new | permanent link

New package mutoss with initial version 0.1-1
Package: mutoss
Type: Package
Title: GUI and wrappers for multiple testing procedures
Version: 0.1-1
Date: 2010-08-17
Author: MuToss Coding Team (Berlin 2010), Gilles Blanchard, Thorsten Dickhaus, Niklas Hack, Frank Konietschke, Kornelius Rohmeyer, Jonathan Rosenblatt, Marsel Scheer, Wiebke Werft
Maintainer: Kornelius Rohmeyer
Description: The Mutoss package and accompanying mutossGUI package are designed to ease the application and comparison of multiple hypothesis testing procedures.
Depends: R (>= 2.8.0), multcomp (>= 1.1-0), methods, plotrix
Suggests: fdrtool, multtest (>= 2.2.0), mvtnorm, qvalue
License: GPL
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: mutoss
Repository/R-Forge/Revision: 64
Date/Publication: 2010-08-18 14:35:29
Packaged: 2010-08-17 20:54:11 UTC; rforge

More information about mutoss at CRAN
Path: /cran/new | permanent link

Tue, 17 Aug 2010

New package mritc with initial version 0.3-1
Package: mritc
Title: MRI tissue classification.
Version: 0.3-1
Author: Dai Feng and Luke Tierney
Description: Various methods for MRI tissue classification.
Maintainer: Dai Feng
Depends: R (>= 2.11.1), fmri (>= 1.3), AnalyzeFMRI (>= 1.1-10), misc3d (>= 0.7-0), lattice (>= 0.18-8)
License: GPL
Packaged: 2010-08-17 13:25:36 UTC; fengd
Repository: CRAN
Date/Publication: 2010-08-17 18:47:24

More information about mritc at CRAN
Path: /cran/new | permanent link

New package isva with initial version 1.0
Package: isva
Type: Package
Title: Independent Surrogate Variable Analysis
Version: 1.0
Date: 2010-08-14
Author: Andrew E Teschendorff
Maintainer:
Depends: qvalue, fastICA
Description: Independent Surrogate Variable Analysis is a general algorithm for feature selection in the presence of potentially confounding factors.
License: GPL-2
LazyLoad: yes
Packaged: Mon Aug 16 22:56:38 2010; aet21
Repository: CRAN
Date/Publication: 2010-08-17 05:06:03

More information about isva at CRAN
Path: /cran/new | permanent link

New package IniStatR with initial version 1.0.0
Package: IniStatR
Version: 1.0.0
Date: 2010-08-17
Depends: R (>= 2.8.0)
Imports:
Enhances:
Suggests:
Title: Initiation à la Statistique avec R
Author: Frederic Bertrand , Myriam Maumy-Bertrand .
Maintainer: Frederic Bertrand
LazyLoad: yes
LazyData: yes
Description: This packages provides datasets for the book "Initiation à la Statistique avec R", Dunod, 2010.
License: GPL-3
Encoding: latin1
URL: http://www-irma.u-strasbg.fr/~fbertran/
Classification/MSC:
Packaged: 2010-08-17 01:11:52 UTC; Bertrand
Repository: CRAN
Date/Publication: 2010-08-17 05:05:34

More information about IniStatR at CRAN
Path: /cran/new | permanent link

Mon, 16 Aug 2010

New package TunePareto with initial version 1.0
Package: TunePareto
Type: Package
Title: Multi-objective parameter tuning for classifiers
Version: 1.0
Date: 2010-07-13
Author: Christoph Muessel, Hans Kestler
Maintainer: Hans Kestler
Description: Generic methods for parameter tuning of classification algorithms using multiple scoring functions
Suggests: snowfall, class, tree, e1071, randomForest, igraph
License: Artistic-2.0
LazyLoad: yes
Packaged: 2010-08-13 13:20:38 UTC; muessel
Repository: CRAN
Date/Publication: 2010-08-16 13:46:23

More information about TunePareto at CRAN
Path: /cran/new | permanent link

Sun, 15 Aug 2010

New package lubridate with initial version 0.1
Package: lubridate
Type: Package
Title: Make dealing with dates a little easier
Version: 0.1
Author: Hadley Wickham , Garrett Grolemund
Maintainer: Hadley Wickham
Description: Lubridate makes it easier to work with dates and times by providing functions to identify and parse date-time data, extract and modify components of a date-time (years, months, days, hours, minutes, and seconds), perform accurate math on date-times, handle time zones and Daylight Savings Time. Lubridate has a consistent, memorable syntax, that makes working with dates fun instead of frustrating.
Depends: R (>= 2.8), plyr, stringr
Enhances: chron, timeDate, zoo, xts, its, tis, timeSeries, fts, tseries
Suggests: testthat
License: GPL
LazyData: true
Collate: 'accessors-day.r' 'accessors-hour.r' 'accessors-minute.r' 'accessors-misc.r' 'accessors-month.r' 'accessors-second.r' 'accessors-tz.r' 'accessors-week.r' 'accessors-year.r' 'coercion.r' 'durations.r' 'epochs.r' 'intervals.r' 'ops.durations.r' 'parse.r' 'periods.r' 'pretty.r' 'round.r' 'util.r' 'zzz.r'
Packaged: 2010-08-14 17:18:06 UTC; hadley
Repository: CRAN
Date/Publication: 2010-08-15 04:46:38

More information about lubridate at CRAN
Path: /cran/new | permanent link

New package FitARMA with initial version 1.3
Package: FitARMA
Title: FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
Version: 1.3
Date: 2010-08-14
Author: A.I. McLeod
Maintainer: A.I. McLeod
Depends: R (>= 2.0.0), FitAR
Description: Implements fast maximum likelihood algorithm for fitting ARMA time series. Uses S3 methods print, summary, fitted, residuals. Fast exact Gaussian ARMA simulation.
Classification/ACM: G.3, G.4, I.5.1
Classification/MSC: 62M10, 91B84
License: GPL (>= 2)
URL: http://www.stats.uwo.ca/faculty/aim
Packaged: 2010-08-14 22:34:51 UTC; aim
Repository: CRAN
Date/Publication: 2010-08-15 04:46:28

More information about FitARMA at CRAN
Path: /cran/new | permanent link

Sat, 14 Aug 2010

New package ber with initial version 1.0
Package: ber
Type: Package
Title: Batch Effects Removal
Version: 1.0
Date: 2010-08-14
Author: Marco Giordan
Maintainer:
Suggests: MASS, golubEsets, vsn
Description: In this package there are functions for adjusting the data to remove batch effects
License: GPL-2
Packaged: 2010-08-14 16:07:39 UTC; marco
Repository: CRAN
Date/Publication: 2010-08-14 16:54:24

More information about ber at CRAN
Path: /cran/new | permanent link

Fri, 13 Aug 2010

New package DeducerExtras with initial version 1.0
Package: DeducerExtras
Type: Package
Title: Additional dialogs and functions for Deducer
Version: 1.0
Date: 2010-08-10
Author: Ian Fellows
Maintainer: Ian Fellows
Description: Added functionality for Deducer. This package includes additional dialogs for calculating distribution function values, cluster analysis, factor analysis and more.
Depends: Deducer
License: GPL-2
LazyLoad: yes
Packaged: 2010-08-13 04:25:30 UTC; Ian
Repository: CRAN
Date/Publication: 2010-08-13 05:04:42

More information about DeducerExtras at CRAN
Path: /cran/new | permanent link

Thu, 12 Aug 2010

New package demography with initial version 1.0
Package: demography
Version: 1.0
Date: 2010-08-12
Title: Forecasting mortality, fertility, migration and population data
Author: Rob J Hyndman, Heather Booth, Leonie Tickle, John Maindonald
Maintainer: Rob J Hyndman
Depends: R (>= 2.6.0), forecast (>= 1.0), rainbow, ftsa
Suggests: mgcv, cobs, strucchange, RCurl
LazyData: yes
LazyLoad: yes
Description: Functions for demographic analysis including lifetable calculations; Lee-Carter modelling; functional data analysis of mortality rates, fertility rates, net migration numbers; and stochastic population forecasting.
License: GPL (>= 2)
URL: http://robjhyndman.com/software/demography
Packaged: 2010-08-12 09:13:38 UTC; hyndman
Repository: CRAN
Date/Publication: 2010-08-12 11:22:09

More information about demography at CRAN
Path: /cran/new | permanent link

New package igraphtosonia with initial version 1.0
Package: igraphtosonia
Type: Package
Version: 1.0
Date: 2010-08-05
Title: Convert iGraph graps to SoNIA .son files
Author: Sean J Westwood
Maintainer: Sean J Westwood
Depends: igraph
Description: This program facilitates exporting igraph graphs to the SoNIA file format
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-08-11 19:45:59 UTC; seanwestwood
Repository: CRAN
Date/Publication: 2010-08-12 04:59:22

More information about igraphtosonia at CRAN
Path: /cran/new | permanent link

New package isdals with initial version 1.0-1
Package: isdals
Version: 1.0-1
Title: Provides data sets for Introduction to Statistical Data Analysis for the Life Sciences
Author: Claus Ekstrom and Helle Sorensen
Maintainer: Claus Ekstrom
Description: Provides data sets for Introduction to Statistical Data Analysis for the Life Sciences
License: GPL-2
Packaged: 2010-08-11 19:44:30 UTC; claus
Repository: CRAN
Date/Publication: 2010-08-12 04:59:24

More information about isdals at CRAN
Path: /cran/new | permanent link

New package charlson with initial version 1.0
Package: charlson
Type: Package
Title: Converts listwise icd9 data into comorbidity count and Charlson Index
Version: 1.0
Date: 2010-05-04
Author: Vanessa Cox
Depends: R (>= 2.8), plyr,reshape
Maintainer: Vanessa Cox
Description: Input patient id and icd9 codes and obtain summary index
License: Unlimited
LazyLoad: yes
Packaged: 2010-05-07 00:44:18 UTC; vanessa
Repository: CRAN
Date/Publication: 2010-08-12 04:59:20

More information about charlson at CRAN
Path: /cran/new | permanent link

Wed, 11 Aug 2010

New package normwhn.test with initial version 1.0
Package: normwhn.test
Type: Package
Title: Normality and White Noise Testing
Version: 1.0
Date: 2010-08-02
Author: Peter Wickham
Maintainer: Peter Wickham
Description: Includes Omnibus Univariate and Multivariate Normality Tests (See Doornik and Hansen (1994)). One variation allows for the possibility of weak dependence rather than independence in the variable(s). Also included is an univariate white noise test where the null hypothesis is "white noise" rather than strict "white noise".
License: GPL-3
Packaged: 2010-08-10 23:08:55 UTC; peter
Repository: CRAN
Date/Publication: 2010-08-11 19:32:45

More information about normwhn.test at CRAN
Path: /cran/new | permanent link

New package interactivity with initial version 0.1
Package: interactivity
Type: Package
Title: toggle R interactive mode.
Version: 0.1
Date: 2010-08-11
Author: Jeffrey Horner, Jeroen Ooms
Maintainer: Jeroen Ooms
Description: Toggle R interactive mode by setting C level global variable R_Interactive.
License: GPL
LazyLoad: yes
Packaged: 2010-08-11 18:21:51 UTC; root
Repository: CRAN
Date/Publication: 2010-08-11 19:32:32

More information about interactivity at CRAN
Path: /cran/new | permanent link

Tue, 10 Aug 2010

New package phitest with initial version 1.0-0
Package: phitest
Title: Nonparametric goodness-of-fit methods based on phi-divergences
Version: 1.0-0
Author: Leah R. Jager
Description: This package perform a generalized goodness-of-fit test based on phi-divergences. This test works by considering the maximum 'distance' between the hypothesized distribution function and the empirical distribution function, where the measure of 'distance' is based on a phi-divergence. This generalized family of tests is indexed by a real-valued parameter, s, wich can take values in [-1,2]. Special cases of this family include the Berk-Jones statistic (s=0), the supremum form of the Anderson-Darling statistic (s=2), and the statistic of Jaescke and Eicker (s=-1). See the references for the phi.test() function for references regarding these special cases. In addition to performing a statistical test, this package will also invert the test statistic to form and plot confidence bands for the true distribution function for sample sizes up to 10,000.
Maintainer: Leah R. Jager
Depends: R (>= 2.7.0)
License: GPL
Packaged: Tue Aug 10 13:14:10 2010; jager
Repository: CRAN
Date/Publication: 2010-08-10 19:01:23

More information about phitest at CRAN
Path: /cran/new | permanent link

New package pathmox with initial version 0.1
Package: pathmox
Type: Package
Title: Segmentation Trees in Partial Least Squares Path Modeling
Version: 0.1
Date: 2010-08-09
Author: Gaston Sanchez , and Tomas Aluja
Maintainer: Gaston Sanchez
Depends: plspm
Description: companion package of plspm with approaches of segmentation trees in PLS Path Modeling.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-08-09 20:36:36 UTC; Gaston
Repository: CRAN
Date/Publication: 2010-08-10 14:17:07

More information about pathmox at CRAN
Path: /cran/new | permanent link

New package futile.paradigm with initial version 1.0.0
Package: futile.paradigm
Type: Package
Title: A framework for working in a functional programming paradigm in R
Version: 1.0.0
Date: 2010-08-09
Depends: futile.options
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe
Description: Provides dispatching implementations suitable for functional programming paradigms. The framework provides a mechanism for attaching guards to functions similar to Erlang, while also providing the safety of assertions reminiscent of Eiffel.
License: LGPL-3
LazyLoad: yes
Packaged: Mon Aug 9 19:49:55 2010; brian
Repository: CRAN
Date/Publication: 2010-08-10 14:16:52

More information about futile.paradigm at CRAN
Path: /cran/new | permanent link

Mon, 09 Aug 2010

New package magma with initial version 0.2.1-1
Package: magma
Title: Matrix Algebra on GPU and Multicore Arcitectures
Version: 0.2.1-1
Date: 2010-08-09
Author: Brian J Smith
Maintainer: Brian J Smith
Depends: R (>= 2.10.0), methods
SystemRequirements: nVidia CUDA toolkit (>= release 3.0), LAPACK shared library, MAGMA shared libraries (== release 0.2)
Description: Magma matrix classes and methods for parallel processing of matrix algebra operations. Operations are performed with algorithms developed by the MAGMA research project. MAGMA aims to acheive the fastest possible linear algebra libraries on hybrid mutlicore CPU and GPU architectures by exploiting their massive parallelism and minimizeing communication latencies.
URL: http://icl.cs.utk.edu/magma
License: GPL (>= 2)
Packaged: 2010-08-09 14:22:20 UTC; bjsmith
Repository: CRAN
Date/Publication: 2010-08-09 14:49:28

More information about magma at CRAN
Path: /cran/new | permanent link

Sun, 08 Aug 2010

New package care with initial version 1.0.0
Package: care
Version: 1.0.0
Date: 2010-08-08
Title: CAR Estimation, Variable Selection, and Regression
Author: Verena Zuber and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
Depends: R (>= 2.7.0), corpcor (>= 1.5.7)
Suggests:
Description: The "care" package implements the CAR regression approach described in Zuber and Strimmer (2010). CAR scores measure the correlations between the response and the Mahalanobis-decorrelated predictors. The squared CAR score is a natural measure of variable importance and provides a canonical ordering of variables - see http://arxiv.org/abs/1007.5516 for details. This package provides functions for estimating CAR scores, for variable selection using CAR scores, and for estimating corresponding regression coefficients. Both shrinkage as well as empirical estimators are available.
License: GPL (>= 3)
URL: http://strimmerlab.org/software/care/
Packaged: Sun Aug 8 18:51:46 2010; strimmer
Repository: CRAN
Date/Publication: 2010-08-08 18:54:32

More information about care at CRAN
Path: /cran/new | permanent link

New package SQUAREM with initial version 2010.8-1
Package: SQUAREM
Title: Squared extrapolation methods for accelerating fixed-point iterations
Description: Algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM algorithm. It can be used to accelerate any smooth, linearly convergent acceleration scheme. A tutorial style introduction to this package is available in a vignette on the CRAN download page or, when the package is loaded in an R session, with vignette("SQUAREM").
Depends: R (>= 2.10.0)
Suggests: setRNG
Version: 2010.8-1
LazyLoad: yes
License: GPL (>= 2)
Author: Ravi Varadhan
Maintainer: Ravi Varadhan and Paul Gilbert
URL: http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html
Packaged: 2010-08-08 17:39:18 UTC; varadhan
Repository: CRAN
Date/Publication: 2010-08-08 18:54:28

More information about SQUAREM at CRAN
Path: /cran/new | permanent link

Fri, 06 Aug 2010

New package HapEstXXR with initial version 0.1-3
Package: HapEstXXR
Type: Package
Title: HapEstXXR
Version: 0.1-3
Date: 2010-08-06
Author: Sven Knueppel and Klaus Rohde
Maintainer: Sven Knueppel
Description: Haplotype-Based Analysis of Association for genetic traits
Depends: survival
License: GPL-2
Packaged: 2010-08-06 12:45:08 UTC; knueppel
Repository: CRAN
Date/Publication: 2010-08-06 14:23:32

More information about HapEstXXR at CRAN
Path: /cran/new | permanent link

New package MSToolkit with initial version 2.0
Package: MSToolkit
Type: Package
Title: The MSToolkit library for clinical trial design
Version: 2.0
Date: 2009-06-29
Author: Mango Solutions & Pfizer
Maintainer: MSToolkit
Description: MSToolkit library for evaluating clinical trial design and analysis operating characteristics through simulation.
Depends: R (>= 2.3.1), MASS
Suggests: RUnit, Rlsf
License: GPL
Repository: CRAN
Repository/R-Forge/Project: mstoolkit
Repository/R-Forge/Revision: 29
Date/Publication: 2010-08-06 09:29:26
Packaged: 2010-08-04 20:41:50 UTC; rforge

More information about MSToolkit at CRAN
Path: /cran/new | permanent link

Thu, 05 Aug 2010

New package MatrixModels with initial version 0.1-1
Package: MatrixModels
Version: 0.1-1
Date: 2010-08-01
Title: Modelling with Sparse And Dense Matrices
Author: Douglas Bates and Martin Maechler
Maintainer: Doug and Martin
Description: Modelling with sparse and dense 'Matrix' matrices, using modular prediction and response module classes.
Depends: R (>= 2.10.1), stats, utils, methods, Matrix (>= 0.999375-43)
notyetImports: stats4
LazyLoad: yes
Encoding: UTF-8
License: GPL (>= 2)
URL: http://Matrix.R-forge.R-project.org/
Packaged: 2010-08-05 20:31:28 UTC; hornik
Repository: CRAN
Date/Publication: 2010-08-05 20:52:15

More information about MatrixModels at CRAN
Path: /cran/new | permanent link

New package cumSeg with initial version 1.0
Package: cumSeg
Type: Package
Title: Change point detection in genomic sequences
Version: 1.0
Date: 2010-08-03
Author: Vito M.R. Muggeo
Maintainer: Vito M.R. Muggeo
Description: Estimation of number and location of change points in mean-shift (piecewise constant) models. Particularly useful to model genomic sequences of continuous measurements.
Depends: lars
License: GPL
LazyLoad: no
Packaged: 2010-08-05 09:48:48 UTC; PcVito
Repository: CRAN
Date/Publication: 2010-08-05 10:45:47

More information about cumSeg at CRAN
Path: /cran/new | permanent link

New package mhurdle with initial version 0.1-0
Package: mhurdle
Version: 0.1-0
Date: 2010-05-03
Title: Estimation of models with limited dependent variables
Author: Fabrizio Carlevaro , Yves Croissant , Stephane Hoareau
Maintainer: Yves Croissant
Depends: R (>= 1.8.0), Formula, truncreg, maxLik
Suggests:
Description: Estimation of models with zero left-censored variables. Null values may be caused by a selection process, insufficient ressource or infrequency of purchase.
License: GPL (>= 2)
URL: http://www.r-project.org
Repository: CRAN
Repository/R-Forge/Project: mhurdle
Repository/R-Forge/Revision: 7
Date/Publication: 2010-08-05 06:54:56
Packaged: 2010-08-04 21:05:49 UTC; rforge

More information about mhurdle at CRAN
Path: /cran/new | permanent link

Tue, 03 Aug 2010

New package GWASExactHW with initial version 1.0
Package: GWASExactHW
Type: Package
Title: Exact Hardy-Weinburg testing for Genome Wide Association Studies
Version: 1.0
Date: 2009-08-24
Author: Ian Painter, GENEVA project, University of Washington
Maintainer: Ian Painter
Description: This package contains a function to do exact Hardy-Weinburg testing (using Fisher's test) for SNP genotypes as typically obtained in a Genome Wide Association Study (GWAS).
License: GPL-3
LazyLoad: yes
Packaged: 2010-07-29 19:22:12 UTC; Ian
Repository: CRAN
Date/Publication: 2010-08-03 05:50:12

More information about GWASExactHW at CRAN
Path: /cran/new | permanent link

Mon, 02 Aug 2010

New package optimx with initial version 0.84
Package: optimx
Version: 0.84
Date: 2010-07-30
Title: A replacement and extension of the optim() function
Author: John C Nash and Ravi Varadhan
Maintainer: John C Nash
Description: Provides a replacement and extension of the optim() function to unify and streamline optimization capabilities in R for smooth, possibly box constrained functions of several or many parameters
License: GPL-2
Lazyload: Yes
Depends: numDeriv, BB, ucminf, Rcgmin, Rvmmin, minqa, setRNG
Repository: CRAN
Repository/R-Forge/Project: optimizer
Repository/R-Forge/Revision: 369
Date/Publication: 2010-08-02 05:48:18
Packaged: 2010-08-01 20:52:45 UTC; rforge

More information about optimx at CRAN
Path: /cran/new | permanent link

New package nnc with initial version 1.10
Package: nnc
Type: Package
Title: Nearest Neighbour Autocovariates
Version: 1.10
Date: 2010-08-01
Author: A. I. McLeod and M. S. Islam
Maintainer:
Depends: R (>= 2.0.0), class, nnet
Description: Computes nearest neighbour autocovariates
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-08-01 20:33:50 UTC; aim
Repository: CRAN
Date/Publication: 2010-08-02 05:48:16

More information about nnc at CRAN
Path: /cran/new | permanent link

New package SlimPLS with initial version 0.3
Package: SlimPLS
Version: 0.3
Date: 2010-07-15
Title: SlimPLS multivariate feature selection
Author: Michael Gutkin
Maintainer: Ofer Lavi
Depends: R (>= 2.0.1), e1071, randomForest, methods, bioDist, zipfR
Description: SlimPLS is an implementation of SlimPLS multivariate feature selection.
License: GPL-2
Packaged: Sun Aug 1 21:27:41 2010; oferlav1
Repository: CRAN
Date/Publication: 2010-08-02 05:48:07

More information about SlimPLS at CRAN
Path: /cran/new | permanent link

Sun, 01 Aug 2010

New package corrsieve with initial version 1.6-1
Package: corrsieve
Version: 1.6-1
Date: 2010/07/30
Title: CorrSieve
Author: Michael G. Campana
Maintainer: Michael G. Campana
Description: Statistical summary of Structure output.
License: GPL (>= 3)
Depends: methods
URL: http://www.mcdonald.cam.ac.uk/projects/genetics/projects/CorrSieve/CorrSieve.htm
Cite: Campana et al. CorrSieve: software for summarising and evaluating STRUCTURE output
BugReports:
Packaged: 2010-08-01 04:46:17 UTC; michaelcampana
Repository: CRAN
Date/Publication: 2010-08-01 09:35:29

More information about corrsieve at CRAN
Path: /cran/new | permanent link

Fri, 30 Jul 2010

New package RGtk2Extras with initial version 0.0.1
Package: RGtk2Extras
Type: Package
Title: Data frame editor and dialog making wrapper for RGtk2
Version: 0.0.1
Date: 2010-06-25
Author: Tom Taverner, with contributions from John Verzani and Iago Conde
Maintainer: Tom Taverner
Description: Useful add-ons for RGtk2
Depends: methods, RGtk2(>= 2.12.8), gWidgets, gWidgetsRGtk2
Recommends: cairoDevice
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-30 19:27:19 UTC; d3x487
Repository: CRAN
Date/Publication: 2010-07-30 20:19:52

More information about RGtk2Extras at CRAN
Path: /cran/new | permanent link

New package rJython with initial version 0.0-2
Package: rJython
Version: 0.0-2
Date: 2010-07-19
Title: R interface to Python via Jython
Author: G. Grothendieck and Carlos J. Gil Bellosta (authors of Jython itself are Jim Hugunin, Barry Warsaw, Samuele Pedroni, Brian Zimmer, Frank Wierzbicki and others; Bob Ippolito is the author of the simplejson Python module)
Maintainer: Carlos J. Gil Bellosta
Description: R interface to Python via Jython allowing R to call python code.
SystemRequirements: Java
Depends: rJava (>= 0.8-1), rjson (>= 0.1.9)
License: GPL (>= 2)
URL: https://r-forge.r-project.org/projects/rjython/
Repository: CRAN
Repository/R-Forge/Project: rjython
Repository/R-Forge/Revision: 20
Date/Publication: 2010-07-30 13:57:59
Packaged: 2010-07-27 20:56:19 UTC; rforge

More information about rJython at CRAN
Path: /cran/new | permanent link

New package VecStatGraphs3D with initial version 1.0
Package: VecStatGraphs3D
Type: Package
Title: Vector analysis using graphical and analytical methods in 3D.
Version: 1.0
Date: 2010-07-21
Author: Juan Carlos Ruiz Cuetos, Maria Eugenia Polo Garcia, Pablo Garcia Rodriguez
Maintainer: Juan Carlos Ruiz Cuetos , Pablo Garcia Rodriguez
Depends: R (>= 2.10.1), rgl, misc3d, tcltk
Description: This package performs a 3D statistical analysis, both numerical and graphic, of a set of vectors. Since a vector has three components (a module and two angles) vector analysis is performed in two stages: modules are analyzed by means of linear statistics and orientations are analyzed by spherical statistics. Tests and spherical statistic parameters have associated a full range of graphing: vector maps, density maps, distribution modules and angles. The tests, spherical statistic parameters and graphs allow us detecting another distribution properties (I.e. anisotropy) and outliers.
License: GPL-3
URL: http://vecstat3d.mhostweb.com/
Packaged: 2010-07-30 10:58:22 UTC; Juan Carlos
Repository: CRAN
Date/Publication: 2010-07-30 11:34:36

More information about VecStatGraphs3D at CRAN
Path: /cran/new | permanent link

New package Runiversal with initial version 1.0
Package: Runiversal
Type: Package
Title: Runiversal - Package for converting R objects to Java variables and XML.
Version: 1.0
Date: 2010-07-29
Author: Mehmet Hakan Satman
Maintainer: Mehmet Hakan Satman - http://www.mhsatman.com
Description: This package contains some functions for converting R objects to Java style variables and XML. Generated Java code is interpretable by dynamic Java libraries such as Beanshell. Calling R externally and handling the Java or XML output is an other way to call R from other languages without native interfaces.
License: GPL
LazyLoad: yes
Packaged: 2010-07-29 19:20:48 UTC; hako
Repository: CRAN
Date/Publication: 2010-07-30 05:02:06

More information about Runiversal at CRAN
Path: /cran/new | permanent link

New package gaussDiff with initial version 1.0
Package: gaussDiff
Version: 1.0
Date: 2010-06-30
Title: Difference measures for multivariate Gaussian probability density functions
Author: Henning Rust
Maintainer: Henning Rust
Depends: R (>= 1.8.0)
Enhanves:
Suggests:
Description: A collection difference measures for multivariate Gaussian probability density functions, such as the Euclidian mean, the Mahalanobis distance, the Kullback-Leibler divergence, the J-Coefficient, the Minkowski L2-distance, the Chi-square divergence and the Hellinger Coefficient.
License: GPL (>= 2)
URL: http://www.lsce.ipsl.fr/Pisp/64/henning.rust.html
Packaged: 2010-07-29 22:28:45 UTC; hrust
Repository: CRAN
Date/Publication: 2010-07-30 05:02:10

More information about gaussDiff at CRAN
Path: /cran/new | permanent link

Thu, 29 Jul 2010

New package pvclass with initial version 1.0
Package: pvclass
Type: Package
Title: P-values for Classification
Version: 1.0
Date: 2010-07-29
Author: Niki Zumbrunnen , Lutz Duembgen .
Maintainer: Niki Zumbrunnen
Depends: Matrix
Description: Computes nonparametric p-values for the potential class memberships of new observations as well as cross-validated p-values for the training data. The p-values are based on permutation tests applied to an estimated Bayesian likelihood ratio, using a plug-in statistic for the Gaussian model, 'k nearest neighbors' or 'weighted nearest neighbors'. Additionally, it provides graphical displays and quantitative analyses of the p-values.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-29 14:06:28 UTC; niki
Repository: CRAN
Date/Publication: 2010-07-29 15:47:20

More information about pvclass at CRAN
Path: /cran/new | permanent link

New package rTOFsPRO with initial version 1.1
Package: rTOFsPRO
Type: Package
Title: Time-of-flight mass spectra signal processing
Version: 1.1
Date: 2010-07-12
Author: Dariya Malyarenko, Maureen Tracy and William Cooke
Maintainer: Dariya Malyarenko
Suggests: R.matlab
Description: rTOFsPRO provides functions for signal processing of the linear TOF spectra to produce aligned peak intensity matrix (and peak positions)
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-28 17:19:00 UTC; Maureen Tracy
Repository: CRAN
Date/Publication: 2010-07-29 09:14:26

More information about rTOFsPRO at CRAN
Path: /cran/new | permanent link

New package constrainedKriging with initial version 0.1.0
Package: constrainedKriging
Version: 0.1.0
Type: Package
Title: Constrained, covariance-matching constrained and universal point or block kriging
Date: 2010-02-24
Author: Christoph Hofer
Maintainer: Christoph Hofer
Description: The constrainedKriging package provides functions for efficient computations of nonlinear spatial predictions with local change of support. The package supplies functions for tow-dimensional spatial interpolation by constrained, covariance-matching constrained and universal (external drift) kriging for points or block of any shape for data with a nonstationary mean function and an isotropic weakly stationary variogram. The linear spatial interpolation methods, constrained and covariance-matching constrained kriging, provide approximately unbiased prediction for nonlinear target values under change of support. The constrainedKriging package extends the range of geostatistical tools available in R and provides a veritable alternative to conditional simulation for nonlinear spatial prediction problems with local change of support.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Depends: R (>= 2.9.0), sp(>= 0.9-60), spatialCovariance(>= 0.6-4), methods
Imports: gpclib(>= 1.5-1), RandomFields(>= 1.3.41)
Packaged: 2010-07-28 11:09:56 UTC; hoferc
Repository: CRAN
Date/Publication: 2010-07-29 09:13:31

More information about constrainedKriging at CRAN
Path: /cran/new | permanent link

New package dafs with initial version 1.0-34
Package: dafs
Version: 1.0-34
Date: 2010-07-29
Title: Data analysis for forensic scientists
Author: James Curran, Danny Chang
Maintainer: James Curran
Depends: s20x
Description: Data and miscellanea to support the book "Introduction to Data analysis with R for Forensic Scientists", Curran, J.M. 2010 CRC Press ISBN: 978-1-4200-8826-7
License: GPL (>= 2)
Packaged: 2010-07-29 05:20:19 UTC; jcur002
Repository: CRAN
Date/Publication: 2010-07-29 09:13:34

More information about dafs at CRAN
Path: /cran/new | permanent link

New package compareGroups with initial version 0.1-3
Package: compareGroups
Type: Package
Title: descriptives by groups
Version: 0.1-3
Date: 2010-07-27
Depends: R (>= 2.11.0), xtable, Hmisc, gdata, tcltk, foreign
Author: Héctor Sanz, Isaac Subirana, Joan Vila
Maintainer: Isaac Subirana
Description: This package is meant to facilitate the construction of bivariate table (descriptives of several variables between groups) and generate reports in LaTeX or (CSV) plain text. Also, it includes a graphical interface to build these tables more easily.
License: GPL (>= 2)
LazyLoad: yes
Encoding: latin1
Packaged: 2010-07-29 08:54:20 UTC; instalar
Repository: CRAN
Date/Publication: 2010-07-29 09:21:17

More information about compareGroups at CRAN
Path: /cran/new | permanent link

Wed, 28 Jul 2010

New package splinesurv with initial version 0.6-13
Package: splinesurv
Version: 0.6-13
Title: Nonparametric bayesian survival analysis
Author: Emmanuel Sharef , Robert L. Strawderman , and David Ruppert
Maintainer: Emmanuel Sharef
Depends: R (>= 2.5.0), MASS, survival
Suggests: coda, tkrplot
Description: Utilities for nonparametric Bayesian analysis of clustered survival data. The baseline hazard function and frailty density are modeled using penalized B-splines. Options include adaptive knot selection and the inclusion of a parametric component.
License: GPL (>= 2)
Repository: CRAN
Repository/R-Forge/Project: splinesurv
Repository/R-Forge/Revision: 21
Date/Publication: 2010-07-28 07:55:39
Packaged: 2010-07-27 20:58:20 UTC; rforge

More information about splinesurv at CRAN
Path: /cran/new | permanent link

Tue, 27 Jul 2010

New package sprint with initial version 0.2.0
Package: sprint
Version: 0.2.0
Date: 2010-06-12
Title: Simple Parallel R INTerface
Author: University of Edinburgh SPRINT Team
Maintainer: University of Edinburgh SPRINT Team
Depends: R (>= 2.9.2)
Suggests: ff (>= 2.1-1), multtest, RUnit
SystemRequirements: MPI2, Unix, GNU Make
Description: A simple framework for performing computation in parallel of R scripts and a library of parallelized R functions.
License: GPL (>= 3)
Packaged: 2010-07-27 12:40:28 UTC; mpiotrow
Repository: CRAN
Date/Publication: 2010-07-27 18:11:18

More information about sprint at CRAN
Path: /cran/new | permanent link

New package grt with initial version 0.1.0
Package: grt
Version: 0.1.0
Date: 2010-07-27
Depends: R (>= 2.10.1), grDevices, graphics, stats, utils, MASS, rgl, misc3d
Author: The original Matlab toolbox by Leola A. Alfonso-Reese. R port, with several significant modifications by Kazunaga Matsuki.
Maintainer: Kazunaga Matsuki
Description: Functions to generate and analyze data for psychology experiments based on the General Recognition Theory.
Title: General Recognition Theory
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-27 07:36:32 UTC; hornik
Repository: CRAN
Date/Publication: 2010-07-27 07:43:12

More information about grt at CRAN
Path: /cran/new | permanent link

Mon, 26 Jul 2010

New package dismo with initial version 0.5-1
Package: dismo
Type: Package
Title: Species distribution modeling
Version: 0.5-1
Date: 25-July-2010
Depends: R (>= 2.7.0), rJava (>= 0.5-0), methods, raster, sp
Suggests: rgdal, gbm, splines, XML, ROCR, deldir, gstat, randomForest, kernlab
Author: Robert Hijmans, Steven Phillips, John Leathwick and Jane Elith
Maintainer:
Description: Functions for species distribution modeling, that is, predicting entire distributions form occurences at specific sites.
License: GPL (>= 3)
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: dismo
Repository/R-Forge/Revision: 200
Date/Publication: 2010-07-26 21:43:10
Packaged: 2010-07-26 20:56:08 UTC; rforge

More information about dismo at CRAN
Path: /cran/new | permanent link

New package HDclassif with initial version 1.0
Package: HDclassif
Type: Package
Title: High Dimensionnal Classification.
Version: 1.0
Depends: graphics, stats, MASS
Date: 2010-07-01
Author: R.Aidan L.Berge C.Bouveyron S.Girard
Maintainer: L.Berge
Description: New disciminant analysis and data clustering methods for high dimensional data, based on the asumption that high-dimensional data live in different subspaces with low dimensionality proposing a new parametrization of the Gaussian mixture model which combines the ideas of dimension reduction and constraints on the model.
License: GPL-2
LazyLoad: yes
ZipData: yes
Packaged: 2010-07-26 13:21:51 UTC; Laurent
Repository: CRAN
Date/Publication: 2010-07-26 21:02:10

More information about HDclassif at CRAN
Path: /cran/new | permanent link

New package WGCNA with initial version 0.92-3
Package: WGCNA
Version: 0.92-3
Date: 2010-07-26
Title: Weighted Gene Co-Expression Network Analysis
Author: Peter Langfelder and Steve Horvath
Maintainer: Peter Langfelder
Depends: R (>= 2.3.0), stats, impute, grDevices, dynamicTreeCut (>= 1.20), utils, flashClust, qvalue, Hmisc, splines
Suggests: GO.db, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi
ZipData: no
License: GPL (>= 2)
Description: Functions necessary to perform Weighted Gene Co-Expression Network Analysis
URL: http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/BranchCutting/
Packaged: 2010-07-26 16:33:01 UTC; plangfelder
Repository: CRAN
Date/Publication: 2010-07-26 17:08:05

More information about WGCNA at CRAN
Path: /cran/new | permanent link

New package rAverage with initial version 0.3-1
Package: rAverage
Version: 0.3-1
Date: 2010-07-23
Title: Parameter estimation for the Averaging model of Information Integration Theory
Author: Stefano Noventa , Davide Massidda , Marco Vicentini , Giulio Vidotto
Maintainer: Stefano Noventa , Davide Massidda
Depends: R (>= 2.8), methods, tcltk, foreign
Suggests: RODBC
Description: Parameter estimation for the averaging model of Anderson's Information Integration Theory
License: GPL (>= 2)
URL: http://qplab.psy.unipd.it/
Packaged: 2010-07-26 13:12:41 UTC; Davide
Repository: CRAN
Date/Publication: 2010-07-26 13:47:11

More information about rAverage at CRAN
Path: /cran/new | permanent link

New package BMS with initial version 0.2.4
Package: BMS
Type: Package
Title: Bayesian Model Averaging Library
Version: 0.2.4
Date: 2010-07-26
Author: Martin Feldkircher and Stefan Zeugner
Maintainer: Stefan Zeugner
Depends: R (>= 2.5), methods
Description: see help on BMS-package
License: Artistic-2.0
URL: http://bms.zeugner.eu
Packaged: 2010-07-26 09:01:12 UTC; zeugner
Repository: CRAN
Date/Publication: 2010-07-26 11:48:46

More information about BMS at CRAN
Path: /cran/new | permanent link

New package alabama with initial version 2010.7-1
Package: alabama
Type: Package
Title: Constrained nonlinear optimization
Description: Augmented Lagrangian Adaptive Barrier Minimization Algorithm for optimizing smooth nonlinear objective functions with constraints. Linear or nonlinear equality and inequality constraints are allowed.
Depends: R (>= 2.10.1), numDeriv
Version: 2010.7-1
Date: 2010-07-24
Author: Ravi Varadhan (with contributions from Gabor Grothendieck)
Maintainer: Ravi Varadhan
URL: http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-25 21:17:16 UTC; varadhan
Repository: CRAN
Date/Publication: 2010-07-26 09:32:56

More information about alabama at CRAN
Path: /cran/new | permanent link

Sun, 25 Jul 2010

New package RcmdrPlugin.SensoMineR with initial version 1.11
Package: RcmdrPlugin.SensoMineR
Type: Package
Title: Graphical User Interface for SensoMineR
Version: 1.11
Date: 2007-08-10
Author: F. Husson, J. Josse, S. Le
Encoding: latin1
Maintainer: Francois Husson
Depends: R (>= 2.5.0), SensoMineR, FactoMineR, Rcmdr, tcltk
Description: Rcmdr Plugin for the SensoMineR package
License: GPL (>= 2)
URL: http://sensominer.free.fr, http://www.agrocampus-rennes.fr/math/
LazyLoad: no
Packaged: 2010-07-19 09:04:04 UTC; PRI
Repository: CRAN
Date/Publication: 2010-07-25 11:06:09

More information about RcmdrPlugin.SensoMineR at CRAN
Path: /cran/new | permanent link

New package LogicForest with initial version 1.0
Package: LogicForest
Type: Package
Title: Logic Forest
Version: 1.0
Date: 2010-07-07
Author: Bethany Wolf
Maintainer: Bethany Wolf
Depends: LogicReg, CircStats, gtools, plotrix
Description: Classification ensemble based on logic regression trees. Used for classification of binary responses based on binary predictors and for identification of important variables and variable interactions predictive of a binary outcome.
License: GPL-2
LazyLoad: yes
Packaged: 2010-07-09 15:42:20 UTC; wolfb
Repository: CRAN
Date/Publication: 2010-07-25 11:06:03

More information about LogicForest at CRAN
Path: /cran/new | permanent link

New package GPseq with initial version 0.1
Package: GPseq
Type: Package
Title: gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments
Version: 0.1
Date: 2010-07-21
Author: Sudeep Srivastava, Liang Chen
Maintainer: Sudeep Srivastava
Description: Some functions for modeling sequence read counts as a generalized poisson model and to use this model for detecting differentially expressed genes in different conditions and differentially spliced exons.
Depends: R (>= 2.10.1)
License: GPL-2
LazyLoad: yes
Packaged: 2010-07-22 00:04:48 UTC; sudeepsr
Repository: CRAN
Date/Publication: 2010-07-25 11:05:48

More information about GPseq at CRAN
Path: /cran/new | permanent link

Sat, 24 Jul 2010

New package someMTP with initial version 1.0
Package: someMTP
Type: Package
Title: What the package does (short line)
Version: 1.0
Date: 2010-07-06
Author: livio finos
Maintainer:
Description: It is a collection of functions for Multiplicty Correction and Multiple Testing.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-21 08:56:10 UTC; livio
Repository: CRAN
Date/Publication: 2010-07-24 20:43:43

More information about someMTP at CRAN
Path: /cran/new | permanent link

New package sigclust with initial version 1.0.0
Package: sigclust
Title: Statistical Significance of Clustering
Version: 1.0.0
Author: Hanwen Huang, Yufeng Liu & J. S. Marron
Description: SigClust is a statistical method for testing the significance of clustering results. SigClust can be applied to assess the statistical significance of splitting a data set into two clusters. For more than two clusters, SigClust can be used iteratively.
Depends: R (>= 2.4.0), methods
Maintainer: Hanwen Huang
License: GPL (>= 2)
Packaged: 2010-07-20 19:56:30 UTC; hanwenh
Repository: CRAN
Date/Publication: 2010-07-24 20:43:34

More information about sigclust at CRAN
Path: /cran/new | permanent link

New package rvgtest with initial version 0.5.0
Package: rvgtest
Type: Package
Title: Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators
Version: 0.5.0
Date: 2010-07-12
Author: Josef Leydold and Sougata Chaudhuri
Maintainer: Josef Leydold
Description: Test suite for non-uniform pseudo-random number generators.
License: GPL-2
URL: http://statmath.wu.ac.at/unuran/
Repository: CRAN
Repository/R-Forge/Project: rvgtest
Repository/R-Forge/Revision: 47
Date/Publication: 2010-07-24 20:43:26
Packaged: 2010-07-12 20:52:32 UTC; rforge

More information about rvgtest at CRAN
Path: /cran/new | permanent link

New package pglm with initial version 0.1-0
Package: pglm
Version: 0.1-0
Date: 2010-07-13
Title: panel generalized linear model
Author: Yves Croissant
Maintainer: Yves Croissant
Depends: R (>= 1.8.0), maxLik, statmod, plm
Suggests: lmtest, car
Description: Estimation of panel models for glm-like models: this includes binomial models (logit and probit) count models (poisson and negbin) and ordered models (logit and probit)
License: GPL (>= 2)
URL: http://www.r-project.org
Repository: CRAN
Repository/R-Forge/Project: pglm
Repository/R-Forge/Revision: 4
Date/Publication: 2010-07-24 20:41:56
Packaged: 2010-07-13 20:52:24 UTC; rforge

More information about pglm at CRAN
Path: /cran/new | permanent link

New package operator.tools with initial version 1.0.0
Package: operator.tools
Type: Package
Title: Utilities for working with R's operators
Version: 1.0.0
Date: 2010-07-18
Author: Christopher Brown
Maintainer: Christopher Brown
Suggests: operators, RUnit
Description: Utilities for working with R's operators
License: GPL-2
URL: http://opendatagroup.com/category/blog/
Packaged: 2010-07-21 16:34:43 UTC; cbrown
Repository: CRAN
Date/Publication: 2010-07-24 20:21:53

More information about operator.tools at CRAN
Path: /cran/new | permanent link

New package multitaper with initial version 0.1-1
Package: multitaper
Version: 0.1-1
Date: 2010-06-08
Title: Multitaper Spectral Analysis
Author: Karim Rahim
Maintainer: Karim Rahim
Depends: R (>= 2.11.1)
Suggests:
Description: Generates Discrete Prolate Spheroidal Sequences and provides functions to perform general multitaper spectral analysis.
License: GPL (>= 2)
URL:
Packaged: 2010-07-10 22:13:52 UTC; karim
Repository: CRAN
Date/Publication: 2010-07-24 20:21:37

More information about multitaper at CRAN
Path: /cran/new | permanent link

New package evaluate with initial version 0.1
Package: evaluate
Type: Package
Title: Parsing and evaluation tools that provide more details than the default.
Version: 0.1
Author: Hadley Wickham
Maintainer: Hadley Wickham
Description: Parsing and evaluation tools that make it easy to recreate the command line behaviour of R.
License: GPL
Collate: 'eval.r' 'graphics.r' 'output.r' 'parse.r' 'replay.r' 'src-region.r' 'watcher.r'
Packaged: 2010-07-19 12:56:17 UTC; hadley
Repository: CRAN
Date/Publication: 2010-07-24 20:15:43

More information about evaluate at CRAN
Path: /cran/new | permanent link

New package SII with initial version 1.0.0
Package: SII
Type: Package
Title: Calculate ANSI S3.5-1997 Speech Intelligibility Index
Version: 1.0.0
Date: 2010-07-22
Author: Gregory R. Warnes
Maintainer: Gregory R. Warnes
Description: This package calculates ANSI S3.5-1997 Speech Intelligibility Index (SII), a standard method for computing the intelligibility of speech from acoustical measurements of speech, noise, and hearing thresholds. This package includes data frames corresponding to Tables 1 - 4 in the ANSI standard as well as a function utilizing these tables and user-provided hearing threshold and noise level measurements to compute the SII score. The methods implemented here extend the standard computations to allow calculation of SII when the measured frequencies do not match those required by the standard by applying interpolation to obtain values for the required frequencies -- Development of this package was funded by the Center for Bioscience Education and Technology (CBET) of the Rochester Institute of Technology (RIT).
Depends:
Suggests: splines, gdata, xtable
License: GPL-2
LazyLoad: yes
Packaged: 2010-07-23 01:20:50 UTC; warnes
Repository: CRAN
Date/Publication: 2010-07-24 19:42:30

More information about SII at CRAN
Path: /cran/new | permanent link

Fri, 09 Jul 2010

New package list with initial version 1.0
Package: list
Version: 1.0
Date: 2010-07-08
Title: Multivariate Statistical Analysis for the Item Count Technique
Author: Graeme Blair , Kosuke Imai
Maintainer: Graeme Blair
Depends: R (>= 2.10.0), utils, VGAM (>= 0.8-1), magic (>= 1.4-6), gamlss.dist (>= 4.0-0)
Description: list is a publicly available R package that allows researchers to conduct a multivariate statistical analysis for the item count technique. This survey methodology is also known as the list experiment or the unmatched count technique is an alternative to the commonly used randomized response method. The package implements the methods described in Imai (2010).
LazyLoad: yes
LazyData: yes
License: GPL (>= 2)
Packaged: 2010-07-09 11:24:50 UTC; gblair
Repository: CRAN
Date/Publication: 2010-07-09 13:27:53

More information about list at CRAN
Path: /cran/new | permanent link

New package simexaft with initial version 1.0.2
Package: simexaft
Type: Package
Title: simexaft
Version: 1.0.2
Date: 2010-07-08
Author: Juan Xiong , Wenqing He , Grace Y. Yi
Maintainer: Juan Xiong
Description: Implement of the Simulation-Extrapolation (SIMEX) algorithm for the accelerated failure time (AFT) with covariates subject to measurement error.
License: GPL
Depends: survival, mvtnorm
LazyLoad: yes
Packaged: 2010-07-08 20:44:11 UTC; pandahc
Repository: CRAN
Date/Publication: 2010-07-09 08:43:32

More information about simexaft at CRAN
Path: /cran/new | permanent link

New package delftfews with initial version 0.1-0
Package: delftfews
Version: 0.1-0
Date: 2010-07-08
Title: delftfews R extensions
Author: Mario Frasca , Mich{\` e}l van Leeuwen
Maintainer: Mario Frasca
Description: a collection of timeseries sets handling functions used here at work (Nelen en Schuurmans), initially for the Lizard Scripter.
License: GPL (>= 2)
Depends: R (>= 2.9.2), XML, logging (>= 0.4)
Repository: CRAN
Repository/R-Forge/Project: delftfews
Repository/R-Forge/Revision: 7
Date/Publication: 2010-07-09 08:50:26
Packaged: 2010-07-08 20:46:48 UTC; rforge

More information about delftfews at CRAN
Path: /cran/new | permanent link

Thu, 08 Jul 2010

New package expm with initial version 0.98-1
Package: expm
Type: Package
Title: Matrix exponential
Version: 0.98-1
Date: 2010-07-08
Author: Vincent Goulet, Christophe Dutang, Martin Maechler, David Firth, Marina Shapira, Michael Stadelmann, expm-developers@lists.R-forge.R-project.org
Maintainer: Martin Maechler
Description: Simple package for computation of the matrix exponential and related quantities.
Depends: R (>= 2.9.2), Matrix
License: GPL (>= 2)
Packaged: 2010-07-08 16:26:23 UTC; maechler
Repository: CRAN
Date/Publication: 2010-07-08 18:31:16

More information about expm at CRAN
Path: /cran/new | permanent link

New package fwdmsa with initial version 0.1
Package: fwdmsa
Version: 0.1
Date: 2010-04-19
Title: Forward search for Mokken scale analysis
Author: Wobbe P. Zijlstra
Maintainer: Wobbe P. Zijlstra
Depends: R (>= 2.10.0)
Description: fwdmsa performs the Forward Search for Mokken scale analysis. It detects outliers, it produces several types of diagnostic plots.
License: GPL (>= 2)
URL: http://spitswww.uvt.nl/~pzijlstr/
Packaged: 2010-07-08 11:07:08 UTC; Pzijlstr
Repository: CRAN
Date/Publication: 2010-07-08 18:31:22

More information about fwdmsa at CRAN
Path: /cran/new | permanent link

Tue, 06 Jul 2010

New package mcmcplots with initial version 0.1
Package: mcmcplots
Type: Package
Title: Create Plots from MCMC Output
Version: 0.1
Date: 2010-01-12
Author: S. McKay Curtis
Maintainer: S. McKay Curtis
Depends: coda
Imports: sfsmisc, R2HTML, colorspace
Suggests: R2WinBUGS
Description: MCMC plots
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Packaged: 2010-07-05 22:23:51 UTC; smcurtis
Repository: CRAN
Date/Publication: 2010-07-06 07:35:02

More information about mcmcplots at CRAN
Path: /cran/new | permanent link

New package NCBI2R with initial version 1.3
Package: NCBI2R
Type: Package
Title: NCBI2R-An R package to navigate and annotate genes and SNPs
Version: 1.3
Date: 2010-07-05
Author: Scott Melville
Maintainer: Scott Melville
Description: NCBI2R is a R package that annotates lists of SNPs and/or genes, with current information from NCBI, including LD information. Functions are provided that with one command will provide annotation of the results from genome wide association studies to provide a broader context of their meaning. Other functions enable comparisons between a user's GWA results, and candidate snp/gene lists that are created from keywords, such as specific diseases, phenotypes or gene ontology terms. Commands are simple to follow and designed to work with R objects to integrate into existing workflows. The output produces text fields and weblinks to more information for items such as: gene descriptions, nucleotide positions, OMIM, pathways, phenotypes, and lists of interacting and neighboring genes. Annotation can then be used in R for further analysis, or the objects can be customized for use in spreadsheet programs or web browsers. The NCBI2R package was designed to allow those performing genome analysis to produce output that could easily be understood by a person not familiar with R. Please see http://drop.io/NCBI2R_package for more information. The internet is required for almost all of these functions.
License: GPL (> 2)
LazyLoad: yes
Packaged: 2010-07-06 03:28:22 UTC; melville
Repository: CRAN
Date/Publication: 2010-07-06 07:34:42

More information about NCBI2R at CRAN
Path: /cran/new | permanent link

Mon, 05 Jul 2010

New package rseedcalc with initial version 1.0
Package: rseedcalc
Type: Package
Title: Estimation of Proportion of GM Stacked Seeds in Seed Lots
Version: 1.0
Date: 2010-06-22
Author: Kevin Wright, Jean-Louis Laffont
Maintainer: Kevin Wright
Description: Estimate the percentage of seeds containing GM traits.
Suggests: RExcelInstaller, rcom
License: GPL-2
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: rseedcalc
Repository/R-Forge/Revision: 5
Date/Publication: 2010-07-05 11:21:20
Packaged: 2010-07-02 21:05:04 UTC; rforge

More information about rseedcalc at CRAN
Path: /cran/new | permanent link

New package MMST with initial version 0.6-1
Package: MMST
Type: Package
Title: DATASETS FROM MMST
Version: 0.6-1
Date: 2010-07-04
Author: Keith Halbert
Maintainer: Keith Halbert
Description: The datasets from Modern Multivariate Statistical Techniques by Alan Julian Izenman are contained in this package. The documentation descriptions show the page numbers of references to the data set within the text. See the text for detailed descriptions of the datasets. Also included in this package is a function for exporting these datasets en masse.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-04 14:26:57 UTC; K
Repository: CRAN
Date/Publication: 2010-07-05 11:20:30

More information about MMST at CRAN
Path: /cran/new | permanent link

Fri, 02 Jul 2010

New package nacopula with initial version 0.4-2
Package: nacopula
Version: 0.4-2
Date: 2010-07-02
LastChanged: $LastChangedRevision: 226 $; $LastChangedDate: 2010-07-02 09:41:53 +0200 (Fri, 02. Jul 2010) $
Title: Nested Archimedean Copulas
Description: An R package for nested Archimedean copulas, providing a procedure for computing function values, characteristics such as Kendall's tau and tail dependence coefficients, as well as sampling algorithms for generating random variates.
Author: Marius Hofert and Martin Maechler
Maintainer: Martin Maechler
Depends: methods, R (>= 2.9.1)
Imports: gsl
Suggests: lattice
License: GPL (>= 2)
LazyData: yes
Packaged: 2010-07-02 07:42:31 UTC; maechler
Repository: CRAN
Date/Publication: 2010-07-02 10:02:51

More information about nacopula at CRAN
Path: /cran/new | permanent link

New package bisoreg with initial version 1.0
Package: bisoreg
Type: Package
Title: Bayesian Isotonic Regression with Bernstein Polynomials
Version: 1.0
Date: 2008-10-07
Author: Removed for reviewers
Maintainer: S. McKay Curtis
Depends: R (>= 2.7.0), bootstrap, monreg, R2WinBUGS, coda
Description: Bayesian monotonic regression function
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-01 20:46:05 UTC; smcurtis
Repository: CRAN
Date/Publication: 2010-07-02 07:11:23

More information about bisoreg at CRAN
Path: /cran/new | permanent link

New package SAPP with initial version 1.0.0
Package: SAPP
Version: 1.0.0
Title: Statistical Analysis of Point Processes
Author: The Institute of Statistical Mathematics
Maintainer: Masami Saga
Depends: R (>= 2.9.0)
Description: Functions for statistical analysis of ponit processes
License: GPL (>= 2)
Packaged: 2010-06-23 07:23:14 UTC; msaga
Repository: CRAN
Date/Publication: 2010-07-02 07:11:17

More information about SAPP at CRAN
Path: /cran/new | permanent link

Wed, 30 Jun 2010

New package seqRFLP with initial version 1.0.0
Package: seqRFLP
Type: Package
Title: Simulation and visualization of restriction enzyme cutting pattern from DNA sequences.
Version: 1.0.0
Date: 2010-06-29
Author: Qiong Ding, Jinlong Zhang
Maintainer: Qiong Ding
Description: This package includes functions for handling DNA sequences, especially simulated RFLP and TRFLP pattern based on selected restriction enzyme and DNA sequences.
License: GPL-2
LazyLoad: yes
Packaged: 2010-06-30 13:08:41 UTC; new
Repository: CRAN
Date/Publication: 2010-06-30 13:30:11

More information about seqRFLP at CRAN
Path: /cran/new | permanent link

Built and running on Debian GNU/Linux using R, littler and blosxom. Last updated on Wed, 30 Jun 2010 at 09:16.