Sat, 28 Feb 2015

New package wkb with initial version 0.1-0
Package: wkb
Type: Package
Title: Convert Between Spatial Objects and Well-Known Binary (WKB) Geometry
Version: 0.1-0
Imports: sp
Date: 2015-02-28
Author: TIBCO Software Inc.
Maintainer: Ian Cook
Description: Utility functions to convert between the Spatial classes specified by the package sp, and the well-known binary (WKB) representation for geometry specified by the Open Geospatial Consortium (OGC). Supports Spatial objects of class SpatialPoints, SpatialPointsDataFrame, SpatialLines, SpatialLinesDataFrame, SpatialPolygons, and SpatialPolygonsDataFrame. Supports WKB geometry types Point, LineString, Polygon, MultiPoint, MultiLineString, and MultiPolygon. Includes extensions to enable creation of maps with TIBCO Spotfire.
BugReports: https://github.com/ianmcook/wkb/issues
NeedsCompilation: no
License: BSD_3_clause + file LICENSE
Packaged: 2015-02-28 14:42:00 UTC; icook
Repository: CRAN
Date/Publication: 2015-02-28 17:45:05

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New package laketemps with initial version 0.5.1
Package: laketemps
Type: Package
Title: Lake Temperatures Collected by Situ and Satellite Methods from 1985-2009
Version: 0.5.1
Date: 2015-02-28
Author: Jordan S Read
Maintainer: Jordan S Read
Description: Lake temperature records, metadata, and climate drivers for 291 global lakes during the time period 1985-2009. Temperature observations were collected using satellite and in situ methods. Climatic drivers and geomorphometric characteristics were also compiled and are included for each lake. Data are part of the associated publication from the Global Lake Temperature Collaboration project (http://www.laketemperature.org). See citation('laketemps') for dataset attribution.
License: CC0
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at http://www.usgs.gov/visual-id/credit_usgs.html#copyright. Data are part of the associated publication. See citation('laketemps') for dataset attribution.
BugReports: https://github.com/USGS-R/laketemps/issues
Depends: R (>= 3.0),
Imports: dplyr, reshape2
LazyLoad: yes
LazyData: no
Packaged: 2015-02-28 14:16:47 UTC; jread
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-28 17:44:57

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New package joint.Cox with initial version 1.0
Package: joint.Cox
Type: Package
Title: Penalized Likelihood Estimation under the Joint Cox Models Between TTP and OS for Meta-Analysis
Version: 1.0
Date: 2015-02-28
Author: Takeshi Emura
Maintainer: Takeshi Emura
Description: Perform regression analyses under the joint Cox proportional hazards model between TTP and OS for meta-analysis. The method is applicable for meta-analysis combining several studies or for cluster survival data.
License: GPL-2
Packaged: 2015-02-28 08:35:35 UTC; user
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-28 12:17:50

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Fri, 27 Feb 2015

New package GenForImp with initial version 1.0
Package: GenForImp
Type: Package
Title: The Forward Imputation: A Sequential Distance-Based Approach for Imputing Missing Data
Version: 1.0
Date: 2015-02-27
Author: Nadia Solaro, Alessandro Barbiero, Giancarlo Manzi, Pier Alda Ferrari
Maintainer: Alessandro Barbiero
Description: Two methods based on the Forward Imputation approach are implemented for the imputation of quantitative missing data. One method alternates Nearest Neighbour Imputation and Principal Component Analysis (function 'ForImp.PCA'), the other uses Nearest Neighbour Imputation with the Mahalanobis distance (function 'ForImp.Mahala').
License: GPL-3
Depends: mvtnorm, sn
Packaged: 2015-02-27 17:11:22 UTC; admin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-27 19:31:42

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New package hsdar with initial version 0.1
Package: hsdar
Type: Package
Title: Manage, Analyse and Simulate Hyperspectral Data in R
Version: 0.1
Date: 2015-02-10
Author: Lukas W. Lehnert [cre, aut], Hanna Meyer [ctb], Joerg Bendix [ctb]
Maintainer: Lukas W. Lehnert
Depends: R (>= 2.10.0), sp, raster, rgdal, rootSolve, signal, methods
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using PROSPECT and PROSAIL.
License: GPL
LazyLoad: yes
BuildVignettes: yes
Copyright: see file COPYRIGHTS
URL: http://lcrs.geographie.uni-marburg.de, http://teledetection.ipgp.jussieu.fr/prosail/
Packaged: 2015-02-27 08:50:23 UTC; lehnert
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-27 12:11:24

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New package itsadug with initial version 0.8
Package: itsadug
Title: Interpreting Time Series and Autocorrelated Data Using GAMMs
Version: 0.8
Date: 2015-02-26
Authors@R: c( person("Jacolien", "van Rij", email="vanrij.jacolien@gmail.com", role = c("aut", "cre")),person("Martijn","Wieling", role = "aut"), person("R. Harald","Baayen", role = "aut"), person("Hedderik", "van Rijn", role = "aut"))
Description: GAMM (Generalized Additive Mixed Modeling; Lin & Zhang, 1999) as implemented in the R package mgcv (Wood, S.N., 2006; 2011) is a nonlinear regression analysis which is particularly useful for time course data such as EEG, pupil dilation, gaze data (eye tracking), and articulography recordings, but also for behavioral data such as reaction times and response data. As time course measures are sensitive to autocorrelation problems, GAMMs implements methods to reduce the autocorrelation problems. This package includes functions for the evaluation of GAMM models (e.g., model comparisons, determining regions of significance, inspection of autocorrelational structure in residuals) and interpreting of GAMMs (e.g., visualization of complex interactions, and contrasts).
License: GPL (>= 2)
LazyData: true
Depends: R (>= 2.10), mgcv (>= 1.8)
URL: http://github.com/vr-vr/itsadug
VignetteBuilder: knitr
Suggests: knitr, xtable, sp
Packaged: 2015-02-26 15:26:27 UTC; Jacolien
Author: Jacolien van Rij [aut, cre], Martijn Wieling [aut], R. Harald Baayen [aut], Hedderik van Rijn [aut]
Maintainer: Jacolien van Rij
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-27 06:57:09

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Thu, 26 Feb 2015

New package mma with initial version 1.0-0
Package: mma
Type: Package
Title: Multiple Mediation Analysis
Version: 1.0-0
Date: 2015-02-18
Author: Qingzhao Yu
Maintainer: Qingzhao Yu
Depends: R (>= 2.14.1), gbm
Description: Used for general multiple mediation analysis. The analysis method is described in Yu et al. (2014).
License: GPL (>= 2)
URL: http://www.r-project.org, http://publichealth.lsuhsc.edu/Faculty_pages/qyu/index.html
Packaged: 2015-02-26 18:17:33 UTC; yu
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-26 20:16:55

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New package CEoptim with initial version 1.0
Package: CEoptim
Type: Package
Title: Cross-Entropy R Package for Optimization
Version: 1.0
Date: 2015-02-28
Author: Tim Benham and Qibin Duan and Dirk P. Kroese and Benoit Liquet
Maintainer: Benoit Liquet
Depends: MASS, msm, stats
Description: Optimization solver based on the Cross-Entropy method.
License: GPL (>= 2.0)
Packaged: 2015-02-26 12:02:25 UTC; uqblique
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-26 16:46:44

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Wed, 25 Feb 2015

New package SurvCorr with initial version 1.0
Package: SurvCorr
Type: Package
Title: Correlation of Bivariate Survival Times
Version: 1.0
Date: 2015-02-25
Author: Meinhard Ploner, Alexandra Kaider and Georg Heinze
Maintainer: Georg Heinze
Depends: R (>= 3.0.2)
Imports: survival, fields
Description: Estimates correlation coefficients with associated confidence limits for bivariate, partially censored survival times. Uses the iterative multiple imputation approach proposed by Schemper, Kaider, Wakounig and Heinze, Statistics in Medicine 2013. Provides a scatterplot function to visualize the bivariate distribution, either on the original time scale or as copula.
License: GPL
Packaged: 2015-02-25 16:02:48 UTC; Georg
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-26 02:18:35

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New package dplRCon with initial version 1.0
Package: dplRCon
Type: Package
Title: Concordance for Dendroclimatology
Version: 1.0
Date: 2015-01-16
Author: Maryann Pirie
Maintainer: M R Pirie
Description: The concordance method is a non-parametric method based on bootstrapping that is used to test the hypothesis that two subsets of time series are similar in terms of mean, variance or both. This method was developed to address a concern within dendroclimatology that young trees may produce a differing climate response to older more established trees. Details of this method are available in Pirie, M. (2013). The Climate of New Zealand reconstructed from kauri tree rings: Enhancement through the use of novel statistical methodology. PhD. Dissertation, School of Environment and Department of Statistics, University of Auckland, New Zealand. This package also produces a figure with 3 panels, each panel is for a different climate variable. An example of this figure in included in "On the influence of tree size on the climate - growth relationship of New Zealand kauri (Agathis australis): insights from annual, monthly and daily growth patterns. J Wunder, AM Fowler, ER Cook, M Pirie, SPJ McCloskey. Trees 27 (4), 937-948". For further R functions for loading your own dendroclimatology datasets and performing dendrochronology analysis refer to the R package "dplR: Dendrochronology Program Library in R". The concordance procedure is intended to add to the standard dendrochronology techniques provided in "dplR".
License: GPL
LazyLoad: yes
LazyData: yes
Depends: R (>= 2.10)
Packaged: 2015-02-25 20:43:10 UTC; piriem
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-26 01:56:47

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New package momentchi2 with initial version 0.1.0
Package: momentchi2
Title: Moment-Matching Methods for Weighted Sums of Chi-Squared Random Variables
Version: 0.1.0
Author: Dean Bodenham
Maintainer: Dean Bodenham
Description: A collection of moment-matching methods for computing the cumulative distribution function of a positively-weighted sum of chi-squared random variables. Methods include the Satterthwaite-Welch method, Hall-Buckley-Eagleson method, Wood's F method, and the Lindsay-Pilla-Basak method.
Depends: R (>= 3.1.2)
License: GPL-2 | GPL-3
LazyData: true
Packaged: 2015-02-25 10:34:38 UTC; dean
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-25 11:54:43

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New package ihs with initial version 1.0
Package: ihs
Version: 1.0
Type: Package
Title: Inverse Hyperbolic Sine Distribution
Date: 2015-02-24
Author: Carter Davis
Maintainer: Carter Davis
Depends: R (>= 2.4.0), maxLik (>= 1.2-4)
Description: Density, distribution function, quantile function and random generation for the inverse hyperbolic sine distribution. This package also provides a function that can fit data to the inverse hyperbolic sine distribution using maximum likelihood estimation.
License: GPL (>= 3)
Repository: CRAN
Packaged: 2015-02-25 05:40:24 UTC; carterdavis
NeedsCompilation: no
Date/Publication: 2015-02-25 08:12:31

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New package GAabbreviate with initial version 1.0
Package: GAabbreviate
Type: Package
Version: 1.0
Date: 2015-02-25
Title: Abbreviating Questionnaires (or Other Measures) Using Genetic Algorithms
Description: The GAabbreviate uses Genetic Algorithms as an optimization tool to create abbreviated forms of lengthy questionnaires (or other measures) that maximally capture the variance in the original data of the long form of the measure.
Authors@R: c(person("Luca", "Scrucca", role = "aut"), person("Baljinder K.", "Sahdra", role = c("aut", "cre"), email = "baljinder.sahdra@acu.edu.au"))
Depends: R (>= 3.0), GA (>= 2.0), psych (>= 1.4.3)
License: GPL (>= 2)
ByteCompile: true
LazyLoad: yes
Author: Luca Scrucca [aut], Baljinder K. Sahdra [aut, cre]
Maintainer: Baljinder K. Sahdra
Packaged: 2015-02-25 06:41:06 UTC; basahdra
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-25 08:05:20

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New package BayesSummaryStatLM with initial version 1.0
Package: BayesSummaryStatLM
Type: Package
Title: MCMC Sampling of Bayesian Linear Models via Summary Statistics
Version: 1.0
Date: 2015-01-01
Author: Evgeny Savel'ev, Alexey Miroshnikov, Erin Conlon
Maintainer: Evgeny Savel'ev
Description: Methods for generating Markov Chain Monte Carlo (MCMC) posterior samples of Bayesian linear regression model parameters that require only summary statistics of data as input. Summary statistics are useful for systems with very limited amounts of physical memory. The package provides two functions: one function that computes summary statistics of data and one function that carries out the MCMC posterior sampling for Bayesian linear regression models where summary statistics are used as input. The function read.regress.data.ff utilizes the R package 'ff' to handle data sets that are too large to fit into a user's physical memory, by reading in data in chunks.
Depends: mvnfast, ff
License: GPL (>= 2)
Packaged: 2015-02-25 03:36:21 UTC; evgeny
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-25 08:05:16

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Tue, 24 Feb 2015

New package sprex with initial version 1.0
Package: sprex
Type: Package
Title: Calculate Species Richness and Extrapolation Metrics
Description: Calculate species richness functions for rarefaction and extrapolation.
Version: 1.0
Date: 2015-02-23
Author: Eric Archer
Maintainer: Eric Archer
License: GNU General Public License
Packaged: 2015-02-24 18:47:46 UTC; eric.archer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-25 00:51:16

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New package babar with initial version 1.0
Package: babar
Type: Package
Title: Bayesian Bacterial Growth Curve Analysis in R
Version: 1.0
Date: 2014-11-13
Author: Lydia Rickett, Matthew Hartley, Richard Morris and Nick Pullen
Maintainer: Matthew Hartley
Description: Babar is designed to use nested sampling (a Bayesian analysis technique) to compare possible models for bacterial growth curves, as well as extracting parameters. It allows model evidence and parameter likelihood values to be extracted, and also contains helper functions for comparing distributions as well as direct access to the underlying nested sampling code.
License: GPL-2
Suggests: knitr, R.rsp
VignetteBuilder: knitr, R.rsp
Packaged: 2015-02-24 12:09:25 UTC; hartleym
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-24 23:27:07

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New package assist with initial version 3.1.3
Package: assist
Version: 3.1.3
Title: A Suite of R Functions Implementing Spline Smoothing Techniques
Author: Yuedong Wang , and Chunlei Ke .
Maintainer: Chunlei Ke
Depends: R (>= 3.0.2), nlme, lattice
Description: A comprehensive package for fitting various non-parametric/semi-parametric linear/nonlinear fixed/mixed smoothing spline models.
License: GPL (>= 2)
URL: http://www.pstat.ucsb.edu/faculty/yuedong/software.html
Packaged: 2015-02-20 00:07:50 UTC; Yuedong
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-24 20:17:43

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New package LLSR with initial version 0.0.1.9000
Package: LLSR
Type: Package
Title: Data Analysis of Liquid-Liquid Systems
Version: 0.0.1.9000
Date: 2015-02-24
Author: Diego F Coelho
Maintainer: Diego F Coelho
Description: The methods implemented here were based in the protocol proposed by Merchuk et al. (1998) and Murugesan & Perumalsamy (2005) to analyse Aqueous Two-Phases Systems. Each function brings in its description the reference for the original article which described it. These methods defines nonlinear equations that can be used to fit experimental data through regression methods and also allow us calculate other important system parameters (such as its critical composition, equivolume concentration and phase's composition). The package will include (every other update) new functions in order to comprise useful functions in liquid-liquid analysis.
License: GPL-3
LazyData: TRUE
Depends: R (>= 2.10)
Imports: rootSolve
URL: http://diegofcoelho.github.io/code/
BugReports: https://github.com/eqipehub/LLSR/issues
Suggests: testthat
Packaged: 2015-02-24 13:07:42 UTC; dfcoelho
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-24 15:29:59

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New package coloredICA with initial version 1.0.0
Package: coloredICA
Type: Package
Title: Implementation of Colored Independent Component Analysis and Spatial Colored Independent Component Analysis
Version: 1.0.0
Date: 2014-03-04
Author: Lee, S., Shen, H., Truong, Y. and Zanini, P.
Maintainer: Paolo Zanini
Depends: MASS
Suggests: fastICA
Description: It implements colored Independent Component Analysis (Lee et al., 2011) and spatial colored Independent Component Analysis (Shen et al., 2014). They are two algorithms to perform ICA when sources are assumed to be temporal or spatial stochastic processes, respectively.
License: GPL (>= 2)
Packaged: 2015-02-24 08:46:57 UTC; paolo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-24 11:01:51

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New package coxsei with initial version 0.1
Package: coxsei
Type: Package
Title: Fitting a CoxSEI Model
Version: 0.1
Date: 2015-02-23
Author: Feng Chen
Maintainer: Feng Chen
Description: It fits a CoxSEI (Cox type Self-Exciting Intensity) model to right-censored counting process data.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2015-02-24 00:46:09 UTC; z3243864
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-24 08:03:34

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Mon, 23 Feb 2015

New package wahc with initial version 1.0
Package: wahc
Type: Package
Title: Autocorrelation and Heteroskedasticity Correction in Fixed Effect Panel Data Model
Version: 1.0
Date: 2015-02-23
Author: Zaghdoudi Taha
Maintainer: Zaghdoudi Taha
Description: Fit the fixed effect panel data model with heteroskedasticity and autocorrelation correction.
License: GPL-3
Packaged: 2015-02-23 12:36:53 UTC; Taha
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-23 17:20:43

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New package biomonCore with initial version 1.3.50
Type: Package
Package: biomonCore
Date: 2015-02-16
Version: 1.3.50
Title: Controller Layer for Biomon App Data Analysis
Author: Rodrigo Buhler
Maintainer: Rodrigo Buhler
Description: Biomon app is a software for data analysis automation in Biomonitoring. The implementation is split in three packages taking into account the development model Models-Views-Controllers. Each of these layers supported by a different package: The package Analyz concerns the Models layer of Biomon app; BiomonCore concerns the Controllers layer and Biomon concerns the Views layer. BiomonCore delivers two classes, the class Global prepares the global environment for Biomon app execution and the class Action that delivers methods to deal with the user's requests from the interface, the View layer, and forward them to the methods defined in the Model layer.
License: GPL (>= 2)
Depends: R (>= 2.15.1)
Imports: methods, analyz
Packaged: 2015-02-22 14:15:05 UTC; rodrigobuhler
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-23 19:09:36

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New package RcppAPT with initial version 0.0.1
Package: RcppAPT
Type: Package
Title: Rcpp Interface to the APT Package Manager
Version: 0.0.1
Date: 2015-02-20
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
Description: The APT Package Management System provides Debian and Debian-derived Linux systems with a powerful system to resolve package dependencies. This package offers access directly from R.
SystemRequirements: A Debian-based system with the libapt-pkg-dev package
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.0)
LinkingTo: Rcpp
OS_type: unix
Packaged: 2015-02-21 15:46:27.376682 UTC; edd
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-23 16:45:10

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New package daff with initial version 0.1.1
Package: daff
Version: 0.1.1
Title: Diff, Patch and Merge for Data.frames
Authors@R: c( person("Paul", "Fitzpatrick", email="paul@robotrebuilt.com", role=c("aut"), comment="javascript original, http://paulfitz.github.io/daff/"), person("Edwin", "de Jonge", email="edwindjonge@gmail.com", role=c("aut","cre"), comment="R wrapper"))
Description: Diff, patch and merge for data frames. Document changes in data sets and use them to apply patches. Changes to data can be made visible by using render_diff. Daff uses the V8 package to wrap the 'daff.js' javascript library which is included in the package. Daff exposes a subset of 'daff.js' functionality, tailored for usage within R.
Depends: R (>= 3.1.2)
License: MIT + file LICENSE
LazyData: true
Imports: V8, jsonlite
URL: http://github.com/edwindj/daff
Suggests: testthat
Packaged: 2015-02-23 09:49:31 UTC; Edwin
Author: Paul Fitzpatrick [aut] (javascript original, http://paulfitz.github.io/daff/), Edwin de Jonge [aut, cre] (R wrapper)
Maintainer: Edwin de Jonge
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-23 11:16:20

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New package tRakt with initial version 0.7.4
Package: tRakt
Type: Package
Title: Pull Data from 'trakt.tv'
Version: 0.7.4
Date: 2015-02-15
Authors@R: person("Lukas Burk", email = "jemus42@gmail.com", role = c("aut", "cre"))
Description: A wrapper for the trakt.tv APIv2 which uses httr and jsonlite to send non-OAuth2 requests and receive tidied data.
Depends: R (>= 3.0.2)
Imports: httr, jsonlite, lubridate, plyr, stringr
Suggests: knitr, dplyr, ggplot2
VignetteBuilder: knitr
License: MIT + file LICENSE
LazyData: true
Encoding: UTF-8
URL: http://github.com/jemus42/tRakt
BugReports: http://github.com/jemus42/tRakt/issues
Packaged: 2015-02-22 16:50:53 UTC; Lukas
Author: Lukas Burk [aut, cre]
Maintainer: Lukas Burk
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-23 08:02:33

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New package stocks with initial version 1.1.1
Package: stocks
Type: Package
Title: Fast Functions for Stock Market Analysis
Version: 1.1.1
Date: 2015-02-22
Author: Dane R. Van Domelen
Maintainer: Dane R. Van Domelen
Description: Provides functions for analyzing historical performance of stocks or other investments. Functions are written in C++ to quickly calculate maximum draw-down, Sharpe ratio, Sterling ratio, and other commonly used metrics of stock performance.
License: GPL-2
Depends: R (>= 3.0.0), rbenchmark
Imports: Rcpp (>= 0.11.0)
LinkingTo: Rcpp
Repository: CRAN
Repository/R-Forge/Project: stocks
Repository/R-Forge/Revision: 17
Repository/R-Forge/DateTimeStamp: 2015-02-23 00:49:24
Date/Publication: 2015-02-23 08:09:47
Packaged: 2015-02-23 01:05:14 UTC; rforge
NeedsCompilation: yes

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Sun, 22 Feb 2015

New package wmlf with initial version 0.1.2
Package: wmlf
Type: Package
Title: Wavelet Leaders in Multifractal Analysis
Version: 0.1.2
Date: 2015-01-05
Author: Stephane Roux , Francois Semecurbe , Cecile Tannier
Maintainer: Francois Semecurbe
Description: Analyzing the texture of an image from a multifractal wavelet leader analysis.
License: GPL-2
Depends: R (>= 3.1.2), waveslim, methods
Packaged: 2015-02-22 20:21:09 UTC; Fsemecurbe
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-23 00:38:02

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New package SurvLong with initial version 1.0
Package: SurvLong
Type: Package
Title: Analysis of Proportional Hazards Model with Sparse Longitudinal Covariates
Version: 1.0
Date: 2015-02-22
Author: Hongyuan Cao, Mathew M. Churpek, Donglin Zeng, Jason P. Fine, and Shannon T. Holloway
Maintainer: Shannon T. Holloway
Description: Kernel weighting methods for estimation of proportional hazards models with intermittently observed longitudinal covariates.
License: GPL-2
Packaged: 2015-02-22 18:34:35 UTC; sthollow
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-23 00:23:10

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New package partDSA with initial version 0.9.10
Package: partDSA
Type: Package
Title: Partitioning Using Deletion, Substitution, and Addition Moves
Version: 0.9.10
Author: Annette Molinaro , Adam Olshen , Karen Lostritto , Gregory Ryslik , Steve Weston
Maintainer: Annette Molinaro
Description: A novel tool for generating a piecewise constant estimation list of increasingly complex predictors based on an intensive and comprehensive search over the entire covariate space.
Depends: R (>= 2.5), survival
Suggests: parallel, MASS, TH.data, VGAM
License: GPL-2
Packaged: 2015-02-18 23:14:51 UTC; molinaroa
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-19 00:22:46

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New package gmnl with initial version 1.0
Package: gmnl
Type: Package
Title: Multinomial Logit Models with Random Parameters
Version: 1.0
Date: 2015-02-22
Authors@R: c(person("Mauricio", "Sarrias", role = c("aut", "cre"), email = "msarrias86@gmail.com"), person("Ricardo", "Daziano", role = "aut", email = "daziano@cornell.edu"))
Description: An implementation of maximum simulated likelihood method for the estimation of multinomial logit models with random coefficients. Specifically, it allows estimating models with continuous heterogeneity such as the mixed multinomial logit and the generalized multinomial logit. It also allows estimating models with discrete heterogeneity such as the latent class and the mixed-mixed multinomial logit model.
Depends: R (>= 3.1.1), maxLik, Formula
Imports: plotrix, msm, mlogit, truncnorm, stats
Suggests: AER, lmtest, car, memisc
License: GPL (>= 2)
Packaged: 2015-02-22 20:58:55 UTC; mauriciosarrias
Author: Mauricio Sarrias [aut, cre], Ricardo Daziano [aut]
Maintainer: Mauricio Sarrias
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-23 00:48:06

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New package CopulaREMADA with initial version 0.5-1
Package: CopulaREMADA
Version: 0.5-1
Date: 2015-03-01
Title: Copula Mixed Effect Models for Bivariate Meta-Analysis of Diagnostic Test Accuracy Studies
Author: Aristidis K. Nikoloulopoulos
Maintainer: Aristidis K. Nikoloulopoulos
Depends: R (>= 2.0.0), statmod
Description: It has functions to implement the copula mixed model for meta-analysis of diagnostic test accuracy studies and produce SROC curves and summary operating points (a pair of average sensitivity and specificity) with a confidence region and a predictive region. See details for the methodology in Nikoloulopoulos, A.K. (2015) A mixed effect model for bivariate meta-analysis of diagnostic test accuracy studies using a copula representation of the random effects distribution, ArXiv e-prints.
License: GPL (>= 2)
Packaged: 2015-02-22 18:01:47 UTC; xry09vgu
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-23 00:14:28

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New package AsynchLong with initial version 1.0
Package: AsynchLong
Type: Package
Title: Regression Analysis of Sparse Asynchronous Longitudinal Data
Version: 1.0
Date: 2015-02-06
Author: Hongyuan Cao, Donglin Zeng, Jason P. Fine, and Shannon T. Holloway
Maintainer: Shannon T. Holloway
Description: Estimation of regression models for sparse asynchronous longitudinal observations, where time-dependent response and covariates are mismatched and observed intermittently within subjects. Kernel weighted estimating equations are used for generalized linear models with either time-invariant or time-dependent coefficients.
Depends: compiler, parallel
License: GPL-2
Packaged: 2015-02-11 14:23:10 UTC; sthollow
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-22 20:54:55

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New package TAQMNGR with initial version 2015.2-1
Package: TAQMNGR
Version: 2015.2-1
Date: 2015.02.22
Title: Manage Tick-by-Tick Transaction Data
Author: Francesco Calvori, Fabrizio Cipollini, Giampiero M. Gallo and 'gzstream' authors.
Maintainer: Fabrizio Cipollini
Depends: R (>= 3.0-2)
LinkingTo: Rcpp (>= 0.11.0)
Imports:
Suggests:
SystemRequirements: zlib headers and library
Description: Manager of tick-by-tick transaction data that performs 'cleaning', 'aggregation' and 'import' in an efficient and fast way. The package engine, written in C++, exploits the 'zlib' and 'gzstream' libraries to handle gzipped data without need to uncompress them. 'Cleaning' and 'aggregation' are performed according to Brownlees and Gallo (2006). Currently, TAQMNGR processes raw data from WRDS (Wharton Research Data Service).
License: GPL (>= 2)
URL: http://www.r-project.org
BugReports:
Packaged: 2015-02-22 08:11:51 UTC; cipollini
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-22 17:36:15

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New package pvrank with initial version 1.0
Package: pvrank
Type: Package
Title: Rank Correlations
Version: 1.0
Author: Amerise I. L. , Marozzi M. , Tarsitano A.
Maintainer: Ilaria Lucrezia Amerise
Description: Computes rank correlations and their p-values with various options for tied ranks.
LazyData: yes
NeedsCompilation: yes
Depends: R(>= 3.0.1), Rmpfr, utils
License: GPL (>= 2)
Packaged: 2015-02-21 19:50:07 UTC; agostinotarsitano
Repository: CRAN
Date/Publication: 2015-02-22 17:33:00

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New package SIMMS with initial version 1.0.1
Package: SIMMS
Version: 1.0.1
Type: Package
Title: Subnetwork Integration for Multi-Modal Signatures
Date: 2015-02-22
Author: Syed Haider, Michal Grzadkowski, Paul C. Boutros
Maintainer: Syed Haider
Depends: R (>= 2.15.0), survival (>= 2.36-2), MASS (>= 7.3-12), glmnet (>= 1.9-8)
Description: Algorithms to create prognostic biomarkers using biological networks.
License: GPL-2
LazyLoad: yes
Suggests: knitr
VignetteBuilder: knitr
Packaged: 2015-02-22 09:45:52 UTC; shaider
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-22 15:18:03

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New package mapDK with initial version 0.3.0
Package: mapDK
Type: Package
Title: Maps of Denmark
Version: 0.3.0
Date: 2015-01-21
Author: Sebastian Barfort
Maintainer: Sebastian Barfort
Description: Create static choropleth maps of Denmark using the ggplot2 package.
Depends: R (>= 3.00)
Imports: ggplot2, stringi
License: LGPL-3
LazyData: TRUE
Packaged: 2015-02-22 14:14:12 UTC; sbarfort
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-22 15:31:30

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New package ssize.fdr with initial version 1.2
Package: ssize.fdr
Type: Package
Title: Sample Size Calculations for Microarray Experiments
Version: 1.2
Date: 2015-02-21
Author: Megan Orr, Peng Liu
Maintainer: Megan Orr
Description: This package contains a set of functions that calculates appropriate sample sizes for one-sample t-tests, two-sample t-tests, and F-tests for microarray experiments based on desired power while controlling for false discovery rates. For all tests, the standard deviations (variances) among genes can be assumed fixed or random. This is also true for effect sizes among genes in one-sample and two sample experiments. Functions also output a chart of power versus sample size, a table of power at different sample sizes, and a table of critical test values at different sample sizes.
License: GPL-3
Packaged: 2015-02-22 00:01:01 UTC; megan.orr
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-22 07:59:58

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New package rivr with initial version 0.9.1
Package: rivr
Type: Package
Title: Steady and Unsteady Open-Channel Flow Computation
Version: 0.9.1
Date: 2015-01-10
Author: Michael C Koohafkan [aut, cre]
Maintainer: Michael C Koohafkan
Description: A tool for undergraduate courses in open-channel hydraulics. Provides functions for computing normal and critical depths, steady-state water surface profiles (e.g. backwater curves) and unsteady flow computations (e.g. flood wave routing).
URL: https://github.com/mkoohafkan/rivr
BugReports: https://github.com/mkoohafkan/rivr/issues
License: GPL (>= 3)
Depends: R (>= 3.1.2)
Imports: Rcpp (>= 0.11.3), reshape2 (>= 1.4)
Suggests: dplyr (>= 0.3), ggplot2 (>= 1.0), roxygen2 (>= 4.1), knitr (>= 1.8)
LinkingTo: Rcpp
LazyData: true
VignetteBuilder: knitr
Packaged: 2015-02-21 19:43:10 UTC; Michael
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-22 08:16:06

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New package FRESA.CAD with initial version 2.0.2
Package: FRESA.CAD
Type: Package
Title: FeatuRE Selection Algorithms for Computer Aided Diagnosis
Version: 2.0.2
Date: 2015-02-20
Author: Jose Gerardo Tamez-Pena, Antonio Martinez-Torteya and Israel Alanis
Maintainer: Jose Gerardo Tamez-Pena
Description: Contains a set of utilities for building and testing formula-based models (linear, logistic or COX) for Computer Aided Diagnosis/Prognosis applications. Utilities include data adjustment, univariate analysis, model building, model-validation, longitudinal analysis, reporting and visualization.
License: LGPL (>= 2)
Depends: Rcpp (>= 0.10.0),stringr,miscTools,Hmisc,pROC
LinkingTo: Rcpp, RcppArmadillo
Suggests: nlme,rpart,gplots,RColorBrewer,class,cvTools,glmnet,speedglm,survival
Packaged: 2015-02-22 02:26:03 UTC; Jose Tamez
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-22 08:10:06

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Sat, 21 Feb 2015

New package syuzhet with initial version 0.2.0
Package: syuzhet
Type: Package
Title: Extracts Sentiment and Sentiment-Derived Plot Arcs from Text
Version: 0.2.0
Date: 2015-01-20
Authors@R: person("Matthew", "Jockers", email = "mjockers@gmail.com", role = c("aut", "cre"))
Maintainer: Matthew Jockers
Description: Extracts sentiment and sentiment-derived plot arcs from text using three sentiment dictionaries conveniently packaged for consumption by R users. Implemented dictionaries include "afinn" developed by Finn {\AA}rup Nielsen, "bing" developed by Minqing Hu and Bing Liu, and "nrc" developed by Mohammad, Saif M. and Turney, Peter D. Applicable references are available in README.md and in the documentation for the "get_sentiment" function. The package also provides a method for implementing Stanford's coreNLP sentiment parser. The package provides several methods for plot arc normalization.
URL: https://github.com/mjockers/syuzhet
License: GPL-3
Imports: openNLP, NLP
LazyData: true
Suggests: knitr, pander, testthat (>= 0.9.1)
NeedsCompilation: no
VignetteBuilder: knitr
Packaged: 2015-02-21 22:16:27 UTC; mjockers
Author: Matthew Jockers [aut, cre]
Repository: CRAN
Date/Publication: 2015-02-22 00:24:40

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New package rlm with initial version 1.1
Package: rlm
Type: Package
Title: Robust Fitting of Linear Model
Version: 1.1
Date: 2015-02-20
Author: Oleg Yegorov
Maintainer: Oleg Yegorov
Description: Robust fitting of linear model which can take response in matrix form.
License: GPL (>= 2)
Packaged: 2015-02-20 10:00:22 UTC; Oleg
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-21 07:22:14

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Fri, 20 Feb 2015

New package pullword with initial version 0.1
Package: pullword
Title: R Interface to Pullword Service
Description: R interface to pullword service for Natural Language Processing in Chinese. It enables users to extract valuable words from text by deep learning models. For more details please visit the official site (in Chinese) http://pullword.com/.
Version: 0.1
Author: Tong He
Maintainer: Tong He
BugReports: https://github.com/hetong007/pullword/issues
Depends: R (>= 3.0.2),RCurl
License: LGPL
LazyData: true
Packaged: 2015-02-20 21:59:24 UTC; hetongh
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-20 23:41:39

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New package fastpseudo with initial version 0.1
Package: fastpseudo
Title: Fast Pseudo Observations
Version: 0.1
Authors@R: c(person("Dayne", "Batten", email = "dbatten@bandwidth.com", role = c("aut", "cre")), person(c("Maja", "Pohar", "Perme"), role="ctb", email="maja.pohar@mf.uni-lj.si"), person("Mette", "Gerster", role = "ctb", email="mgerster@health.sdu.dk"))
Description: Computes pseudo-observations for survival analysis on right-censored data based on restricted mean survival time.
Depends: R (>= 3.1.1)
Suggests: geepack
License: GPL-2
LazyData: true
Packaged: 2015-02-20 14:52:40 UTC; dbatten
Author: Dayne Batten [aut, cre], Maja Pohar Perme [ctb], Mette Gerster [ctb]
Maintainer: Dayne Batten
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-20 23:55:47

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New package mmpp with initial version 0.1
Package: mmpp
Type: Package
Title: Various Similarity and Distance Metrics for Marked Point Processes
Version: 0.1
Date: 2015-02-20
Author: Hideitsu Hino, Ken Takano, Yuki Yoshikawa, and Noboru Murata
Maintainer: Hideitsu Hino
Description: Compute similarities and distances between marked point processes.
License: GPL-2
Packaged: 2015-02-20 11:58:51 UTC; hino
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-20 13:40:19

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New package lodGWAS with initial version 1.0-3
Package: lodGWAS
Type: Package
Title: Genome-Wide Association Analysis of a Biomarker Accounting for Limit of Detection
Version: 1.0-3
Date: 2015-02-19
Author: Ahmad Vaez, Ilja M. Nolte, Peter J. van der Most
Maintainer: Ilja M. Nolte
Depends: R (>= 3.0.0)
Imports: survival, rms
Description: Genome-wide association (GWAS) analyses of a biomarker that account for the limit of detection.
License: GPL (>= 3)
Packaged: 2015-02-19 14:26:00 UTC; mostPJ
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-20 11:58:28

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New package UBCRM with initial version 1.0.1
Package: UBCRM
Type: Package
Title: Functions to Simulate and Conduct Dose-Escalation Phase I Studies
Version: 1.0.1
Date: 2015-02-20
Author: Benjamin Esterni with contribution from Baboukar Mane
Maintainer: Christophe Zemmour
Description: Two Phase I designs are implemented in the package: the classical 3+3 and the Continual Reassessment Method. Simulations tools are also available to estimate the operating characteristics of the methods with several user-dependent options.
License: GPL (>= 2)
Packaged: 2015-02-20 08:41:40 UTC; SFUMATOP
NeedsCompilation: no
X-CRAN-Comment: Archived on 2014-08-18 as maintainer address bounced.
Repository: CRAN
Date/Publication: 2015-02-20 10:31:30

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New package Factoshiny with initial version 1.0
Package: Factoshiny
Type: Package
Title: Perform Factorial Analysis from FactoMineR with a Shiny Application
Version: 1.0
Date: 2015-02-19
Author: Pauline Vaissie, Astrid Monge, Francois Husson
Maintainer: Francois Husson
Depends: FactoMineR,shiny(>= 0.11)
Description: Perform factorial analysis with a menu and draw graphs interactively thanks to FactoMineR and a Shiny application.
License: GPL (>= 2)
Packaged: 2015-02-20 08:43:09 UTC; husson
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-20 10:31:28

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New package treeClust with initial version 0.2-2
Package: treeClust
Version: 0.2-2
Date: 2015-02-19
Title: Cluster Distances Through Trees
Author: Sam Buttrey
Maintainer: Sam Buttrey
Depends: rpart, cluster
Description: Create a measure of inter-point dissimilarity useful for clustering mixed data, and, optionally, perform the clustering.
License: GPL (>= 2)
Packaged: 2015-02-19 21:42:23 UTC; sebuttre
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-20 06:37:15

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New package hisse with initial version 1.0
Package: hisse
Version: 1.0
Date: 2015-2-18
Title: Hidden State Speciation and Extinction
Author: Jeremy M. Beaulieu , Brian O'Meara
Maintainer: Jeremy Beaulieu
Depends: ape, deSolve, GenSA, subplex
Imports: parallel
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character distribution to test for hidden shifts in trait dependent rates of diversification.
License: GPL (>= 2)
Packaged: 2015-02-19 17:57:53 UTC; jbeaulieu
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-20 06:35:33

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New package faisalconjoint with initial version 1.15
Package: faisalconjoint
Type: Package
Title: Faisal Conjoint Model: A New Approach to Conjoint Analysis
Version: 1.15
Date: 2015-01-30
Author: Faisal Afzal Siddiqui, Ghulam Hussain, and Mudassir Uddin
Maintainer: Faisal Afzal Siddiqui
Description: It is used for systematic analysis of decisions based on attributes and its levels.
License: GPL-3
NeedsCompilation: no
Packaged: 2015-02-19 23:24:03 UTC; Faisal
Repository: CRAN
Date/Publication: 2015-02-20 06:45:59

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New package boottol with initial version 1.0
Package: boottol
Type: Package
Title: Bootstrap Tolerance Levels for Credit Scoring Validation Statistics
Version: 1.0
Date: 2015-02-19
Author: Garrett Schiltgen
Maintainer: Garrett Schiltgen
Description: Used to create bootstrap tolerance levels for the Kolmogorov-Smirnov (KS) statistic, the area under receiver operator characteristic curve (AUROC) statistic, and the Gini coefficient for each score cutoff.
Depends: R (>= 3.0.0), boot,plyr,sqldf,tcltk
License: GPL-2
Packaged: 2015-02-20 02:14:59 UTC; garrettschiltgen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-20 06:33:08

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Thu, 19 Feb 2015

New package WhopGenome with initial version 0.9.1
Package: WhopGenome
Type: Package
Title: High-Speed Processing of VCF, FASTA and Alignment Data
Version: 0.9.1
Date: 2015-02-17
Author: Ulrich Wittelsbuerger [aut, cre], Heng Li [ctb], Bob Handsaker [ctb]
Authors@R: c( person("Ulrich", "Wittelsbuerger", role = c("aut", "cre"),email = "ulrich.wittelsbuerger@uni-duesseldorf.de"), person("Heng", "Li", role = "ctb"), person("Bob", "Handsaker", role = "ctb") )
Maintainer: Ulrich Wittelsbuerger
Depends: R (>= 1.8.0)
Suggests: RMySQL, DBI, AnnotationDbi
Description: Provides very fast access to whole genome, population scale variation data from VCF files and sequence data from FASTA-formatted files. It also reads in alignments from FASTA, Phylip, MAF and other file formats. Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
License: GPL (>= 2)
LazyLoad: yes
Copyright: inst/COPYRIGHTS
Packaged: 2015-02-19 12:48:27 UTC; uli
NeedsCompilation: yes
X-CRAN-Comment: Earlier versions were archived and removed on 2014-12-19 for misrepresentation of authorship and including zlib code which conflicted with that compiled into R.
Repository: CRAN
Date/Publication: 2015-02-19 22:34:20

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New package RVFam with initial version 1.0
Package: RVFam
Version: 1.0
Date: 2015-02-06
Title: Rare Variants Association Analyses with Family Data
Author: Ming-Huei Chen and Qiong Yang
Maintainer: Ming-Huei Chen
Depends: R (>= 3.0.0)
Imports: coxme, survival, lme4, kinship2, MASS, Matrix
LazyData: true
LazyDataCompression: gzip
Description: The RVFam package provides functions to perform single SNP association analyses and gene-based tests for continuous, binary and survival traits against sequencing data (e.g. exome chip) using family data.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-02-19 21:28:34 UTC; mhchen
Repository: CRAN
Date/Publication: 2015-02-19 22:50:59

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New package disparityfilter with initial version 2.1
Package: disparityfilter
Title: Disparity Filter Algorithm of Weighted Network
Version: 2.1
Description: Disparity filter is a network reduction algorithm to extract the backbone structure of both directed and undirected weighted networks. Disparity filter can reduce the network without destroying the multi-scale nature of the network. The algorithm has been developed by M. Angeles Serrano, Marian Boguna, and Alessandro Vespignani in Extracting the multiscale backbone of complex weighted networks, Proceedings of the national academy of sciences 106 (16).
Author: Alessandro Bessi
Maintainer: Alessandro Bessi
Depends: R (>= 3.1.1), igraph
License: GPL (>= 2)
LazyData: true
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-19 22:34:20

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New package precintcon with initial version 2.1
Package: precintcon
Type: Package
Title: Precipitation Intensity, Concentration and Anomaly Analysis
Version: 2.1
Date: 2015-02-06
LazyData: true
Author: Lucas Venezian Povoa
Maintainer: Lucas Venezian Povoa
Description: It contains functions to analyze the precipitation intensity, concentration and anomaly.
URL: https://github.com/lucasvenez/precintcon
BugReports: https://github.com/lucasvenez/precintcon/issues
Depends: R (>= 2.14), ggplot2, scales
License: GPL (>= 2)
Collate: 'as.precintcon.annual.r' 'as.annual.r' 'as.precintcon.daily.r' 'as.daily.r' 'as.precintcon.decade.r' 'as.decade.r' 'precintcon.deciles.analysis.r' 'deciles.r' 'as.precintcon.deciles.r' 'as.deciles.r' 'precintcon.fd.r' 'as.precintcon.fd.r' 'as.fd.r' 'as.precintcon.monthly.r' 'as.monthly.r' 'as.precintcon.seasonal.r' 'as.seasonal.r' 'precintcon.ci.per.year.analysis.r' 'ci.per.year.r' 'precintcon.ci.analysis.r' 'ci.r' 'precintcon.limits.analysis.r' 'limits.r' 'precintcon.pci.analysis.r' 'pci.r' 'precintcon.pn.analysis.r' 'pn.r' 'precintcon.plot.deciles.r' 'pplot.deciles.r' 'precintcon.plot.histogram.r' 'pplot.histogram.r' 'precintcon.plot.lorenz.r' 'pplot.lorenz.r' 'precintcon.plot.pci.r' 'pplot.pci.r' 'precintcon.plot.pn.r' 'pplot.pn.r' 'precintcon.plot.rai.r' 'pplot.rai.r' 'precintcon.plot.spi.r' 'pplot.spi.r' 'precintcon.H.r' 'precintcon.Z.r' 'precintcon.b.r' 'precintcon.classification.r' 'precintcon.gamma.r' 'precintcon.ln.a.r' 'precintcon.max.r' 'precintcon.min.r' 'precintcon.monthly.aggregation.r' 'precintcon.plot.lorenz.ungrouped.r' 'precintcon.pn.r' 'precintcon.r' 'precintcon.r.squared.r' 'precintcon.rai.analysis.r' 'precintcon.read.data.r' 'precintcon.spi.analysis.r' 'precintcon.spi.per.year.analysis.r' 'precintcon.stat.analysis.r' 'precintcon.trend.test.r' 'rai.r' 'read.data.r' 'spi.per.year.r' 'spi.r' 'stat.r'
Packaged: 2015-02-19 06:40:57 UTC; lucas
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-19 12:14:45

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New package npIntFactRep with initial version 1.2
Package: npIntFactRep
Type: Package
Title: Nonparametric Interaction Tests for Factorial Designs with Repeated Measures
Version: 1.2
Date: 2015-02-19
Author: Jos Feys
Depends: R (>= 3.1.2)
Imports: ez, plyr
Maintainer: Jos Feys
Description: Nonparametric aligned rank tests for interaction in two-way factorial designs, on data set with repeated measures in 'wide' format. There is a choice between three types of aligned ranks for the tests: (1) REGULAR, (2) FRIEDMAN, and (3) KOCH ranks.
License: GPL (>= 2)
Packaged: 2015-02-19 09:37:36 UTC; Jos Feys
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-19 12:13:41

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Wed, 18 Feb 2015

New package rjade with initial version 0.1
Package: rjade
Type: Package
Title: A Clean, Whitespace-Sensitive Template Language for Writing HTML
Version: 0.1
Date: 2015-02-17
Author: Jeroen Ooms, Forbes Lindesay
Maintainer: Jeroen Ooms
Description: Jade is a high performance template engine heavily influenced by Haml and implemented with JavaScript for node and browsers.
License: MIT + file LICENSE
URL: https://github.com/jeroenooms/rjade https://www.npmjs.com/package/jade
BugReports: https://github.com/jeroenooms/rjade/issues
VignetteBuilder: knitr
Imports: V8 (>= 0.5)
Suggests: knitr
Packaged: 2015-02-18 21:15:43 UTC; jeroen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-18 23:38:36

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New package lbfgsb3 with initial version 2015-2.13
Package: lbfgsb3
Type: Package
Title: Limited Memory BFGS Minimizer with Bounds on Parameters
Version: 2015-2.13
Date: 2015-02-13
Authors@R: c( person(given = c("John", "C"), family = "Nash", role = c("aut", "cre"), email = "nashjc@uottawa.ca"), person(given = "Ciyou", family = "Zhu", role = "aut"), person(given = "Richard", family = "Byrd", role = "aut"), person(given = "Jorge", family = "Nocedal", role = "aut"), person(given = c("Jose", "Luis"), family = "Morales", role = "aut"))
Maintainer: John C Nash
Description: Interfacing to Nocedal et al. L-BFGS-B.3.0 (2011) limited memory BFGS minimizer with bounds on parameters.
License: GPL-2
Depends: R (>= 2.15.0), numDeriv
Packaged: 2015-02-16 20:01:08 UTC; john
Author: John C Nash [aut, cre], Ciyou Zhu [aut], Richard Byrd [aut], Jorge Nocedal [aut], Jose Luis Morales [aut]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-18 23:34:54

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New package git2r with initial version 0.6
Package: git2r
Title: Provides Access to Git Repositories
Description: Interface to the libgit2 library, which is a pure C implementation of the Git core methods. Provides access to Git repositories to extract data and running some basic git commands.
Version: 0.6
Date: 2015-02-18
License: GPL-2
Copyright: See COPYRIGHTS file.
URL: https://github.com/ropensci/git2r
BugReports: https://github.com/ropensci/git2r/issues
Maintainer: Stefan Widgren
Author: See AUTHORS file.
Depends: R (>= 3.0.2), methods
Type: Package
LazyData: true
Biarch: true
NeedsCompilation: yes
SystemRequirements: zlib headers and library. While the package provides git functionality without the need for dependencies, it can make use of a few libraries to add to it: OpenSSL (non-Windows) to talk over HTTPS and provide the SHA-1 functions. LibSSH2 to enable the SSH transport. iconv (OSX) to handle the HFS+ path encoding peculiarities.
Collate: 'S4_classes.r' 'blame.r' 'blob.r' 'branch.r' 'checkout.r' 'commit.r' 'config.r' 'contributions.r' 'credential.r' 'diff.r' 'fetch.r' 'git2r.r' 'index.r' 'libgit2.r' 'merge.r' 'note.r' 'odb.r' 'pull.r' 'push.r' 'reference.r' 'reflog.r' 'remote.r' 'repository.r' 'reset.r' 'signature.r' 'stash.r' 'status.r' 'tag.r' 'time.r' 'tree.r' 'when.r'
Packaged: 2015-02-18 19:11:20 UTC; stefan
Repository: CRAN
Date/Publication: 2015-02-19 00:11:37

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New package fgpt with initial version 2.2
Package: fgpt
Type: Package
Title: Floating Grid Permutation Technique
Version: 2.2
Date: 2014-08-09
Author: Reinder Radersma & Ben Sheldon
Maintainer: Reinder Radersma
Description: A permutation technique to explore and control for spatial autocorrelation. This package contains low level functions for performing permutations and calculating statistics as well as higher level functions. Higher level functions are an easy to use function for performing spatially restricted permutation tests and summarize and plot results.
VignetteBuilder: knitr
Suggests: knitr
License: GPL
Repository: CRAN
Repository/R-Forge/Project: fgm
Repository/R-Forge/Revision: 45
Repository/R-Forge/DateTimeStamp: 2015-02-18 20:42:27
Date/Publication: 2015-02-19 00:10:08
Packaged: 2015-02-18 21:07:24 UTC; rforge
Depends: R (>= 2.10)
NeedsCompilation: no

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New package HistDAWass with initial version 0.1
Package: HistDAWass
Type: Package
Title: Histogram-Valued Data Analysis
Version: 0.1
Date: 2015-02-17
Authors@R: c(person("Antonio", "Irpino", role = c("aut", "cre"), email = "antonio.irpino@unina2.it"))
Author: Antonio Irpino [aut, cre]
Maintainer: Antonio Irpino
Description: In the framework of Symbolic Data Analysis, a relatively new approach to the statistical analysis of multi-valued data, we consider histogram-valued data, i.e., data described by univariate histograms. The methods and the basic statistics for histogram-valued data are mainly based on the L2 Wasserstein metric between distributions, i.e., a Euclidean metric between quantile functions. The package contains unsupervised classification techniques, least square regression and tools for histogram-valued data and for histogram time series.
License: GPL (>= 2)
Imports: methods, FactoMineR, class
Depends: R (>= 2.10), graphics
LazyData: true
Collate: 'All_classes.R' 'Fuzzy_cmeans.R' 'H_time_series.R' 'HistDAWass-package.R' 'Kohonen_maps.R' 'Met_HTS.R' 'Met_MatH.R' 'Met_distributionH.R' 'Utility.R' 'principal_components.R' 'regression.R' 'unsuperv_classification.R'
NeedsCompilation: no
Packaged: 2015-02-18 15:09:08 UTC; Antonio
Repository: CRAN
Date/Publication: 2015-02-18 17:08:50

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New package modMax with initial version 1.0
Package: modMax
Type: Package
Title: Community Structure Detection via Modularity Maximization
Version: 1.0
Date: 2015-02-09
Author: Maria Schelling, Cang Hui
Maintainer: Maria Schelling
Depends: gtools, igraph
Description: The algorithms implemented here are used to detect the community structure of a network. These algorithms follow different approaches, but are all based on the concept of modularity maximization.
License: GPL-2
Packaged: 2015-02-18 09:44:37 UTC; xxx
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-18 13:58:02

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New package semsfa with initial version 1.0
Package: semsfa
Type: Package
Title: Semiparametric Estimation of Stochastic Frontier Models
Version: 1.0
Date: 2015-02-18
Author: Giancarlo Ferrara and Francesco Vidoli
Maintainer: Giancarlo Ferrara
Description: Semiparametric Estimation of Stochastic Frontier Models following a two step procedure: in the first step semiparametric or nonparametric regression techniques are used to relax parametric restrictions of the functional form representing technology and in the second step variance parameters are obtained by pseudolikelihood estimators or by method of moments.
Depends: R (>= 3.1.2), mgcv, np,
Imports: moments, doParallel, foreach, iterators
License: GPL
Packaged: 2015-02-18 08:13:25 UTC; gferrara
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-18 11:36:02

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New package MortalitySmooth with initial version 2.3.4
Package: MortalitySmooth
Type: Package
Title: Smoothing and Forecasting Poisson Counts with P-Splines
Version: 2.3.4
Date: 2015-02-18
Author: Carlo G Camarda
Maintainer: Carlo G Camarda
Depends: R (>= 3.0.2), svcm, lattice
Description: Smoothing one- and two-dimensional Poisson counts with P-splines specifically tailored to mortality data. Extra-Poisson variation can be accounted as well as forecasting. Collection of mortality data and a specific function for selecting those data by country, sex, age and years.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
VignetteBuilder: knitr
Suggests: knitr
Packaged: 2015-02-18 10:19:48 UTC; giancarlo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-18 11:45:57

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New package frmpd with initial version 1.0.1
Package: frmpd
Type: Package
Title: Regression Analysis of Panel Fractional Responses
Version: 1.0.1
Date: 2015-02-18
Author: Joaquim J.S. Ramalho
Maintainer: Joaquim J.S. Ramalho
Description: Estimation of panel data regression models for fractional responses.
License: GPL-2
Packaged: 2015-02-18 09:33:04 UTC; Joaquim
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-18 11:35:59

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Tue, 17 Feb 2015

New package ATE with initial version 0.2.0
Package: ATE
Type: Package
Title: Inference for Average Treatment Effects using Covariate Balancing
Version: 0.2.0
Date: 2015-02-16
Author: Asad Haris and Gary Chan
Maintainer: Asad Haris
Description: Nonparametric estimation and inference for average treatment effects based on covariate balancing.
License: GPL (>= 2)
Packaged: 2015-02-17 19:08:32 UTC; Asad
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-17 23:42:59

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New package linbin with initial version 0.1.0
Package: linbin
Version: 0.1.0
Date: 2015-02-16
Authors@R: c( person("Ethan Z.", "Welty", email = "ethan.welty+linbin@gmail.com", role = c("aut", "cre")), person("Christian E.", "Torgersen", role = "ctb", comment = "author support and guidance"), person("Samuel J.", "Brenkman", role = "ctb", comment = "elwha and quinault datasets"), person("Jeffrey J.", "Duda", role = "ctb", comment = "elwha dataset"), person("Jonathan B.", "Armstrong", role = "ctb", comment = "fishmotion dataset"))
Type: Package
Depends: R (>= 3.0.1)
License: AGPL-3
Title: Binning and Plotting of Linearly Referenced Data
Description: Short for 'linear binning', the linbin package provides functions for manipulating, binning, and plotting linearly referenced data. Although developed for data collected on river networks, it can be used with any interval or point data referenced to a 1-dimensional coordinate system. Flexible bin generation and batch processing makes it easy to compute and visualize variables at multiple scales, useful for identifying patterns within and between variables and investigating the influence of scale of observation on data interpretation.
LazyData: true
Suggests: knitr
VignetteBuilder: knitr
URL: https://github.com/ezwelty/linbin
BugReports: https://github.com/ezwelty/linbin/issues
Packaged: 2015-02-17 01:38:15 UTC; Admin
Author: Ethan Z. Welty [aut, cre], Christian E. Torgersen [ctb] (author support and guidance), Samuel J. Brenkman [ctb] (elwha and quinault datasets), Jeffrey J. Duda [ctb] (elwha dataset), Jonathan B. Armstrong [ctb] (fishmotion dataset)
Maintainer: Ethan Z. Welty
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-17 19:18:28

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New package GaDiFPT with initial version 1.0
Package: GaDiFPT
Type: Package
Title: First Passage Time Simulation for Gaussian Diffusion Processes
Version: 1.0
Date: 2015-01-16
Author: A. Buonocore, M.F. Carfora
Maintainer: Maria Francesca Carfora
Description: In this package we consider Gaussian Diffusion processes and smooth thresholds. After evaluating the mean of the process to check the subthreshold regimen hypothesis, the FPT density function is reconstructed via the numerical quadrature of the integral equation in (Buonocore 1987); first passage times are also generated by the method in (Buonocore 2014) and results are compared. The timestep of the simulations can iteratively be refined. User should provide the functional form for the drift and the infinitesimal variance in the script 'userfunc.R' and for the threshold in the script 'userthresh.R'. All the parameters required by the implementation are to be set in the script 'userparam.R'. Example scripts for common drifts and thresholds are given.
License: GPL-2
Packaged: 2015-02-17 09:52:29 UTC; carfora
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-17 19:43:09

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Mon, 16 Feb 2015

New package IBDLabels with initial version 1.1
Package: IBDLabels
Type: Package
Title: Convert Between Different IBD-State Labelling Schemes
Version: 1.1
Date: 2014-12-15
Author: Fiona Grimson
Maintainer: Fiona Grimson
Description: Convert "label", "lexicographic", "jacquard" and "vec", full state description vector. All conversions are done to and from "label", as used in IBD_Haplo. More information regarding IBD_Haplo can be found at http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml.
License: GPL-3
LazyLoad: yes
LazyData: yes
Repository: CRAN
Repository/R-Forge/Project: morgan-rtools
Repository/R-Forge/Revision: 36
Repository/R-Forge/DateTimeStamp: 2015-02-14 01:16:14
Date/Publication: 2015-02-17 01:07:25
Packaged: 2015-02-14 01:25:41 UTC; rforge
NeedsCompilation: no

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New package stepR with initial version 1.0
Package: stepR
Title: Fitting Step-Functions
Version: 1.0
Date: 2014-08-04
Authors@R: c(person("Thomas", "Hotz", role = c("aut", "cre"), email = "thomas.hotz@tu-ilmenau.de"), person("Hannes", "Sieling", role = "aut", email = "hsielin@uni-goettingen.de"))
Depends: R (>= 2.15.3), stats
Description: Allows to fit step-functions to univariate serial data where neither the number of jumps nor their positions is known.
License: GPL-3
Classification/MSC: 62G08, 92C40, 92D20
LazyData: yes
Packaged: 2015-02-16 18:03:33 UTC; thomas
Author: Thomas Hotz [aut, cre], Hannes Sieling [aut]
Maintainer: Thomas Hotz
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-16 19:28:55

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New package qrNLMM with initial version 1.0
Package: qrNLMM
Type: Package
Title: Quantile Regression for Nonlinear Mixed-Effects Models
Version: 1.0
Date: 2015-01-30
Author: Christian E. Galarza and Victor H. Lachos
Maintainer: Christian E. Galarza
Imports: matrixcalc, mvtnorm, ghyp, quantreg, psych, tcltk, ald
Description: Quantile regression (QR) for Nonlinear Mixed-Effects Models via the asymmetric Laplace distribution (ALD). It uses the Stochastic Approximation of the EM (SAEM) algorithm for deriving exact maximum likelihood estimates and full inference results for the fixed-effects and variance components. It also provides graphical summaries for assessing the algorithm convergence and fitting results.
License: GPL (>= 2)
Packaged: 2015-02-16 18:07:07 UTC; ra143711
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-16 19:28:54

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New package DNMF with initial version 1.0
Package: DNMF
Version: 1.0
Date: 2014-02-16
Title: Discriminant Non-Negative Matrix Factorization
Author: Zhilong Jia
Maintainer: Zhilong Jia
Description: Discriminant Non-Negative Matrix Factorization aims to extend the Non-negative Matrix Factorization algorithm in order to extract features that enforce not only the spatial locality, but also the separability between classes in a discriminant manner. This algorithm refers to an article, Zafeiriou, Stefanos, et al. "Exploiting discriminant information in nonnegative matrix factorization with application to frontal face verification." Neural Networks, IEEE Transactions on 17.3 (2006): 683-695.
License: GPL (>= 2)
LazyData: true
URL: https://github.com/zhilongjia/DNMF
BugReports: https://github.com/zhilongjia/DNMF/issues
Packaged: 2015-02-16 17:18:13 UTC; zjia
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-16 19:22:58

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New package cds with initial version 1.0
Package: cds
Type: Package
Title: Constrained Dual Scaling for Detecting Response Styles
Version: 1.0
Date: 2015-02-16
Author: Pieter Schoonees [aut, cre]
Authors@R: c(person(given = "Pieter", family = "Schoonees", role = c("aut", "cre"), email = "schoonees@gmail.com"))
Maintainer: Pieter Schoonees
Description: This is an implementation of constrained dual scaling for detecting response styles in categorical data, including utility functions. The procedure involves adding additional columns to the data matrix representing the boundaries between the rating categories. The resulting matrix is then doubled and analyzed by dual scaling. One-dimensional solutions are sought which provide optimal scores for the rating categories. These optimal scores are constrained to follow monotone quadratic splines. Clusters are introduced within which the response styles can vary. The type of response style present in a cluster can be diagnosed from the optimal scores for said cluster, and this can be used to construct an imputed version of the data set which adjusts for response styles.
Depends: R(>= 3.1.2), parallel
Imports: MASS, limSolve, clue, colorspace, copula
LazyLoad: yes
LazyData: yes
ByteCompile: yes
License: GPL (>= 2)
Packaged: 2015-02-16 17:24:39 UTC; pieter
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-16 19:23:01

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New package sgt with initial version 1.0
Package: sgt
Version: 1.0
Type: Package
Title: Skewed Generalized T
Date: 2015-02-12
Author: Carter Davis
Maintainer: Carter Davis
Depends: R (>= 2.4.0), maxLik (>= 1.2-4)
Description: Density, distribution function, quantile function and random generation for the skewed generalized t distribution. This package also provides a function that can fit data to the skewed generalized t distribution using maximum likelihood estimation.
License: GPL (>= 3)
Repository: CRAN
Packaged: 2015-02-16 16:35:38 UTC; carterdavis
NeedsCompilation: yes
Date/Publication: 2015-02-16 17:58:53

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New package glba with initial version 0.2
Package: glba
Version: 0.2
Title: General Linear Ballistic Accumulator Models
Date: 2015-02-15
Author: Ingmar Visser
Maintainer: Ingmar Visser
Depends: R (>= 3.1.2)
Description: Analyses response times and accuracies from psychological experiments with the linear ballistic accumulator (LBA) model from Brown and Heathcote (2008). The LBA model is optionally fitted with explanatory variables on the parameters such as the drift rate, the boundary and the starting point parameters. A log-link function on the linear predictors can be used to ensure that parameters remain positive when needed.
License: GPL
Packaged: 2015-02-16 13:34:50 UTC; ingmar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-16 17:45:52

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New package fdrDiscreteNull with initial version 1.0
Package: fdrDiscreteNull
Type: Package
Title: False Discovery Rate Procedure Under Discrete Null Distributions
Version: 1.0
Date: 2015-02-06
Author: Xiongzhi Chen and R.W. Doerge
Maintainer: Xiongzhi Chen
Description: It is known that current false discovery rate (FDR) procedures can be very conservative when applied to p-values (and test statistics) with discrete (and heterogeneous) null distributions. This package implements the more powerful weighted generalized FDR procedure that adapts to these two features of the discrete paradigm for multiple testing. The package takes in the original data set rather than the p-values in order to carry out the adjustments needed for multiple testing in this paradigm. The methodology applies also to multiple testing where the null p-values are uniformly distributed. The package implements the method for three types of test statistics and their p-values: (a) binomial test on if two independent Poisson distributions have the same means, (b) Fisher's exact test on if the conditional distribution is the same as the marginal distribution for two binomial distributions, (c) the exact negative binomial test on if two independent negative binomial distributions with the same size parameter have the same means. It depends on the R packages ``MCMCpack'' to use its function ``dnoncenhypergeom'' for hypergeometric distributions, and edgeR to uses its normalization techniques for data that follow negative binomial distributions.
Imports: MCMCpack, edgeR
Depends: R(>= 3.1.0)
URL: http://www.princeton.edu/~xiongzhi/fdrDiscreteNull
License: LGPL
Encoding: UTF-8
Packaged: 2015-02-07 02:21:30 UTC; Admin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-16 14:10:01

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Sun, 15 Feb 2015

New package smbinning with initial version 0.1
Package: smbinning
Title: Optimal Binning for Scoring Modeling
Version: 0.1
Author: Herman R. Jopia Bonnet
Maintainer: Herman Jopia
URL: http://www.scoringmodeling.com/rpackage/smbinning
Description: In its core, smbinning categorizes a numeric variable into buckets for ulterior usage in scoring modeling. Its purpose is to automate, as much as possible, the time consuming process of generating predictive characteristics, and also document SQL codes, tables and plots used during the development stage.
Depends: R (>= 3.1.2),sqldf,partykit,Formula
Imports: gsubfn
License: GPL (>= 2)
LazyData: true
Packaged: 2015-02-15 06:17:12 UTC; Owner
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-15 09:59:19

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New package pacman with initial version 0.2.0
Package: pacman
Type: Package
Title: Package Management Tool
Version: 0.2.0
Date: 2012-06-03
Authors@R: c(person("Tyler", "Rinker", role = c("aut", "cre", "ctb"), email = "tyler.rinker@gmail.com"), person("Dason", "Kurkiewicz", role = c("aut", "ctb"), email = "dasonk@iastate.edu"))
Author: Tyler Rinker [aut, cre, ctb], Dason Kurkiewicz [aut, ctb]
Maintainer: Tyler Rinker
Depends: R (>= 2.13.0)
Imports: devtools
Suggests: knitr, lattice, testthat, XML
BugReports: https://github.com/trinker/pacman/issues?state=open
Description: Tools to more conveniently perform tasks associated with add on packages. pacman conveniently wraps library and package related functions and names them in an intuitive and consistent fashion. It seeks to combine functionality from lower level functions which can speed up workflow.
License: GPL-2
URL: https://github.com/trinker/pacman
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-02-15 00:48:13 UTC; Tyler
Repository: CRAN
Date/Publication: 2015-02-15 07:35:42

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New package nFCA with initial version 0.3
Package: nFCA
Type: Package
Title: Numerical Formal Concept Analysis for Systematic Clustering
Version: 0.3
Date: 2015-02-10
Author: Junheng Ma, Jiayang Sun, and Guo-Qiang Zhang
Maintainer: Junheng Ma
Description: Numerical Formal Concept Analysis (nFCA) is a modern unsupervised learning tool for analyzing general numerical data. Given input data, this R package nFCA outputs two nFCA graphs: a H-graph and an I-graph that reveal systematic, hierarchical clustering and inherent structure of the data.
License: GPL-2
SystemRequirements: Ruby, Graphviz
Packaged: 2015-02-15 03:26:42 UTC; Junheng Ma
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-15 07:35:41

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New package js with initial version 0.1
Package: js
Type: Package
Title: Tools for Working with JavaScript in R
Version: 0.1
Date: 2015-02-15
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
Description: A set of utility functions for working with JavaScript in R. It currently includes functions to validate, reformat, optimize and analyze JavaScript code.
License: MIT + file LICENSE
URL: https://github.com/jeroenooms/js
BugReports: https://github.com/jeroenooms/js/issues
VignetteBuilder: knitr
Imports: V8 (>= 0.5)
Suggests: knitr
Packaged: 2015-02-15 02:18:57 UTC; jeroen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-15 07:35:39

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Sat, 14 Feb 2015

New package minimist with initial version 0.1
Package: minimist
Type: Package
Title: Parse Argument Options
Version: 0.1
Date: 2015-02-14
Author: Jeroen Ooms, James Halliday
Maintainer: Jeroen Ooms
Description: A binding to the minimist JavaScript library. This module implements the guts of optimist's argument parser without all the fanciful decoration.
License: MIT + file LICENSE
Imports: V8
URL: https://github.com/jeroenooms/minimist, https://www.npmjs.com/package/minimist
BugReports: https://github.com/jeroenooms/minimist/issues
Packaged: 2015-02-14 21:48:11 UTC; jeroen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-14 23:56:28

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New package Simile with initial version 1.3.2
Package: Simile
Type: Package
Title: Interact with Simile Models
Version: 1.3.2
Depends: tcltk
Date: 2015-02-11
Author: Simulistics Ltd
Maintainer: Jasper Taylor
Description: Allows a Simile model saved as a compiled binary to be loaded, parameterized, executed and interrogated. This version works with Simile v5.97 on.
License: Unlimited
LazyLoad: yes
Packaged: 2015-02-14 13:58:14 UTC; jaspert
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-14 17:31:00

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New package Rborist with initial version 0.1-0
Package: Rborist
Title: Extensible, Parallelizable Implementation of the Random Forest Algorithm
Version: 0.1-0
Date: 2015-1-19
Author: Mark Seligman
Maintainer: Mark Seligman
SystemRequirements: gcc (release >= 4.5).
Description: Scalable decision tree training and prediction.
URL: http://www.suiji.org/arborist, https://github.com/suiji/Arborist
License: MPL (>= 2) | GPL (>= 2) | file LICENSE
LazyLoad: yes
Depends: Rcpp (>= 0.10.1), R(>= 3.1)
Suggests: testthat
LinkingTo: Rcpp, RcppArmadillo
Packaged: 2015-02-14 00:27:46 UTC; seligman
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-14 08:25:43

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Fri, 13 Feb 2015

New package phytotools with initial version 1.0
Package: phytotools
Type: Package
Title: Phytoplankton Production Tools
Version: 1.0
Date: 2015-02-10
Author: Greg M. Silsbe, Sairah Y. Malkin
Maintainer: Greg Silsbe
Depends: insol, FME
Description: Fits PE and RLC data to one of a four published PE models. Simulates incident irradiance as a function of time and space. Calculates phytoplankton production by transposing modeled PE or RLC data to a water column with a user-defined theoretical in-situ irradiance field.
License: GPL-2
Packaged: 2015-02-13 23:31:46 UTC; Greg
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-14 01:08:08

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New package pampe with initial version 1.0
Package: pampe
Type: Package
Title: Implementation of the Panel Data Approach Method for Program Evaluation
Version: 1.0
Date: 2014-07-08
Author: Ainhoa Vega-Bayo
Maintainer: Ainhoa Vega-Bayo
Description: Implements the Panel Data Approach Method for program evaluation as developed in Hsiao, Ching and Ki Wan (2012). pampe estimates the effect of an intervention by comparing the evolution of the outcome for a unit affected by an intervention or treatment to the evolution of the unit had it not been affected by the intervention.
Depends: leaps
License: GPL-2
Packaged: 2015-02-13 19:43:14 UTC; ripley
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-13 20:49:41

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New package FedData with initial version 1.0
Package: FedData
Type: Package
Title: Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
Version: 1.0
Date: 2015-02-06
Author: R. Kyle Bocinsky
Maintainer: R. Kyle Bocinsky
Description: Functions to automate downloading geospatial data available from several federated data sources (mainly sources maintained by the US Federal government). Currently, the package allows for retrieval of four datasets: The National Elevation Dataset digital elevation models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic (SSURGO) database from the National Cooperative Soil Survey (NCSS), which is led by the Natural Resources Conservation Service (NRCS) under the USDA; and the Global Historical Climatology Network (GHCN), coordinated by National Climatic Data Center at NOAA. Additional data sources are in the works, including global DEM resources (ETOPO1, ETOPO5, ETOPO30, SRTM), global soils (HWSD), tree-ring records (ITRDB), MODIS satellite data products, the National Atlas (US), Natural Earth, PRISM, and WorldClim.
License: GPL-3
Depends: sp, raster, rgdal, igraph, Hmisc
Packaged: 2015-02-13 17:48:03 UTC; Bocinsky
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-13 20:22:51

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New package mldr with initial version 0.1.70
Package: mldr
Title: Exploratory Data Analysis and Manipulation of Multi-Label Data Sets
Version: 0.1.70
Date: 2015-02-08
Authors@R: c( person("David", "Charte", email = "fdavidcl@outlook.com", role = "cre"), person("Francisco", "Charte", email = "francisco@fcharte.com", role = "aut"))
Description: Exploratory data analysis and manipulation functions for multi-label data sets along with interactive Shiny application to ease their use.
URL: https://github.com/fcharte/mldr
Depends: R (>= 3.0.0)
Imports: shiny (>= 0.11), XML, circlize
License: LGPL (>= 3) | file LICENSE
LazyData: true
Packaged: 2015-02-13 15:57:45 UTC; fdavidcl
Author: David Charte [cre], Francisco Charte [aut]
Maintainer: David Charte
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-13 17:26:42

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New package shinyTree with initial version 0.2.2
Package: shinyTree
Type: Package
Title: jsTree Bindings for Shiny
Version: 0.2.2
Date: 2015-01-28
Authors@R: c( person(family="Trestle Technology, LLC", role="aut", email="cran@trestletechnology.net"), person("Jeff", "Allen", role="cre", email="cran@trestletechnology.net"), person(family="Institut de Radioprotection et de Sret Nuclaire", role=c("cph"), email = "yann.richet@irsn.fr"), person("Ivan", "Bozhanov", role=c("ctb", "cph"), comment = "jsTree"), person(family="The Dojo Foundation", role=c("ctb", "cph"), comment="require.js"), person(family="jQuery Foundation, Inc.", role=c("ctb", "cph")))
Description: Exposes bindings to jsTree -- a JavaScript library that supports interactive trees -- to enable a rich, editable trees in Shiny.
License: MIT + file LICENSE
Depends: R (>= 2.15.1), methods
Imports: shiny (>= 0.9.0)
Suggests: testthat
BugReports: https://github.com/trestletech/shinyTree/issues
Packaged: 2015-02-13 02:43:02 UTC; jeff
Author: Trestle Technology, LLC [aut], Jeff Allen [cre], Institut de Radioprotection et de Sret Nuclaire [cph], Ivan Bozhanov [ctb, cph] (jsTree), The Dojo Foundation [ctb, cph] (require.js), jQuery Foundation, Inc. [ctb, cph]
Maintainer: Jeff Allen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-13 11:27:51

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New package ABCanalysis with initial version 1.0
Package: ABCanalysis
Type: Package
Title: Computed ABC Analysis
Version: 1.0
Date: 2015-02-11
Author: Michael Thrun, Jorn Lotsch, Alfred Ultsch
Maintainer: Michael Thrun
Description: For a given data set, the package provides a novel method of computing precise limits to acquire subsets which are easily interpreted. Closely related to the Lorenz curve, the ABC curve visualizes the data by graphically representing the cumulative distribution function. Based on an ABC analysis the algorithm calculates, with the help of the ABC curve , the optimal limits by exploiting the mathematical properties pertaining to distribution of analyzed items. The data containing positive values is divided into three disjoint subsets A, B and C, with subset A comprising very profitable values, i.e. largest data values ("the important few") subset B comprising values where the profit equals to the effort required to obtain it, and the subset C comprising of non-profitable values, i.e., the smallest data sets ("the trivial many").
Imports: Hmisc, plotrix
Depends: R (>= 2.10)
License: GPL-3
LazyLoad: yes
Packaged: 2015-02-13 05:52:08 UTC; MT
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-13 11:27:49

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New package BSGS with initial version 1.0
Package: BSGS
Type: Package
Title: Bayesian Sparse Group Selection
Version: 1.0
Date: 2015-02-10
Author: Kuo-Jung Lee and Ray-Bin Chen
Maintainer: Kuo-Jung Lee
Description: The integration of Bayesian variable and sparse group variable selection approaches for regression models.
Depends: R (>= 3.1.1), MASS, compiler, pscl, plyr
License: GPL-2
LazyLoad: yes
Repository: CRAN
NeedsCompilation: no
Packaged: 2015-02-11 23:18:39 UTC; Kuojung Lee
Date/Publication: 2015-02-13 07:39:32

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Thu, 12 Feb 2015

New package PDQutils with initial version 0.1.0
Package: PDQutils
Maintainer: Steven E. Pav
Authors@R: c(person(c("Steven", "E."), "Pav", role=c("aut","cre"), email="shabbychef@gmail.com"))
Version: 0.1.0
Date: 2015-02-12
License: LGPL-3
Title: PDQ Functions via Gram Charlier and Cornish Fisher Approximations
BugReports: https://github.com/shabbychef/PDQutils/issues
Description: A collection of tools for approximating the 'PDQ' functions (respectively, the cumulative distribution, density, and quantile) of probability distributions via classical expansions involving moments and cumulants.
Depends: R (>= 3.0.2)
Imports: orthopolynom, moments
Suggests: testthat, knitr
URL: https://github.com/shabbychef/PDQutils
VignetteBuilder: knitr
Collate: 'appx.r' 'moments.r' 'PDQutils.r'
Packaged: 2015-02-12 18:43:44 UTC; spav
Author: Steven E. Pav [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-12 22:59:25

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New package FastKNN with initial version 0.0.1
Package: FastKNN
Type: Package
Title: Fast k-Nearest Neighbors
Version: 0.0.1
Date: 2015-02-11
Author: Gaston Besanson
Maintainer: Gaston Besanson
Description: Compute labels for a test set according to the k-Nearest Neighbors classification. This is a fast way to do k-Nearest Neighbors classification because the distance matrix -between the features of the observations- is an input to the function rather than being calculated in the function itself every time.
License: GPL-3
Imports: pdist, assertthat
Packaged: 2015-02-12 18:39:41 UTC; DON
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-12 22:37:24

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Wed, 11 Feb 2015

New package tmg with initial version 0.3
Package: tmg
Type: Package
Title: Truncated Multivariate Gaussian Sampling
Version: 0.3
Date: 2015-02-11
Author: Ari Pakman
Maintainer: Ari Pakman
Description: Random number generation of truncated multivariate Gaussian distributions using Hamiltonian Monte Carlo. The truncation is defined using linear and/or quadratic polynomials.
License: GPL-2
Imports: Rcpp
LinkingTo: Rcpp, RcppEigen
URL: http://arxiv.org/abs/1208.4118
Packaged: 2015-02-11 18:54:14 UTC; aripakman
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-11 20:57:16

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New package rlm with initial version 1.0
Package: rlm
Type: Package
Title: Robust Fitting of Linear Model
Version: 1.0
Date: 2015-02-09
Author: Oleg Yegorov
Maintainer: Oleg Yegorov
Description: Robust fitting of linear model which can take response in matrix form.
License: GPL (>= 2)
Packaged: 2015-02-11 14:57:07 UTC; Oleg
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-11 19:58:15

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New package condMVNorm with initial version 2015.2-1
Package: condMVNorm
Title: Conditional Multivariate Normal Distribution
Version: 2015.2-1
Date: 2015-02-10
Authors@R: c(person("Ravi", "Varadhan", role = c("aut", "cre"), email = "ravi.varadhan@jhu.edu"))
Description: Computes conditional multivariate normal probabilities, random deviates and densities.
Imports: stats
Depends: R(>= 1.9.0), mvtnorm
License: GPL-2
Author: Ravi Varadhan [aut, cre]
Maintainer: Ravi Varadhan
NeedsCompilation: no
Repository: CRAN
Packaged: 2015-02-11 17:55:04 UTC; rvaradh1
Date/Publication: 2015-02-11 19:55:24

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New package COMMUNAL with initial version 1.0
Package: COMMUNAL
Type: Package
Title: Robust Selection of Cluster Number K
Version: 1.0
Date: 2014-02-11
Author: Albert Chen [aut, cre], Timothy E Sweeney [aut], Olivier Gevaert [ths]
Maintainer: Albert Chen
Authors@R: c(person("Albert", "Chen", role = c("aut", "cre"), email = "acc2015@stanford.edu"), person(c("Timothy", "E"), "Sweeney", role = "aut", email = "tes17@stanford.edu"), person("Olivier", "Gevaert", role = "ths", email = "ogevaert@stanford.edu"))
Depends: R (>= 2.10), cluster
Suggests: RUnit, NMF, ConsensusClusterPlus
Imports: clValid, fpc, methods, rgl
Description: Facilitates optimal clustering of a data set. Provides a framework to run a wide range of clustering algorithms to determine the optimal number (k) of clusters in the data. Then analyzes the cluster assignments from each clustering algorithm to identify samples that repeatedly classify to the same group. We call these 'core clusters', providing a basis for later class discovery.
NeedsCompilation: no
License: GPL-2
Packaged: 2015-02-11 18:01:27 UTC; stanfordinoxford
Repository: CRAN
Date/Publication: 2015-02-11 19:55:20

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New package tscount with initial version 1.0.0
Package: tscount
Type: Package
Title: Analysis of Count Time Series
Version: 1.0.0
Date: 2015-02-10
Authors@R: c( person("Tobias", "Liboschik", role=c("aut", "cre"), email="liboschik@statistik.tu-dortmund.de"), person("Roland", "Fried", role=c("aut"), email="fried@statistik.tu-dortmund.de"), person("Konstantinos", "Fokianos", role=c("aut"), email="fokianos@ucy.ac.cy"), person("Philipp", "Probst", role=c("aut"), email="philipp.probst@tu-dortmund.de"), person("Jonathan", "Rathjens", role=c("ctb"), email="jonathan.rathjens@tu-dortmund.de"))
Description: Likelihood-based methods for model fitting and assessment, prediction and intervention analysis of count time series following generalized linear models are provided. Models with the identity and with the logarithmic link function are allowed. The conditional distribution can be Poisson or Negative Binomial.
Imports: parallel, ltsa
Suggests: Matrix, xtable, gamlss.data
License: GPL-2 | GPL-3
URL: http://tscount.r-forge.r-project.org
ByteCompile: true
LazyData: true
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2015-02-11 08:36:55 UTC; liboschik
Author: Tobias Liboschik [aut, cre], Roland Fried [aut], Konstantinos Fokianos [aut], Philipp Probst [aut], Jonathan Rathjens [ctb]
Maintainer: Tobias Liboschik
Repository: CRAN
Date/Publication: 2015-02-11 10:40:44

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New package rNMF with initial version 0.5.0
Package: rNMF
Type: Package
Title: Robust Nonnegative Matrix Factorization
Description: An implementation of robust nonnegative matrix factorization (rNMF). The rNMF algorithm decomposes a nonnegative high dimension data matrix into the product of two low rank nonnegative matrices, while detecting and trimming outliers. The main function is rnmf(). The package also includes a visualization tool, see(), that arranges and prints vectorized images.
Version: 0.5.0
Author: Yifan Ethan Xu , Jiayang Sun
Maintainer: Yifan Ethan Xu
Depends: R (>= 2.14.0)
Imports: nnls, knitr
VignetteBuilder: knitr
License: GPL (>= 2)
LazyData: true
Packaged: 2015-02-11 00:55:21 UTC; yifanxu
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-11 07:47:35

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New package readstata13 with initial version 0.5-3
Package: readstata13
Type: Package
Title: Import Stata 13 Data Files
Version: 0.5-3
Authors@R: c( person("Jan Marvin", "Garbuszus", email = "jan.garbuszus@ruhr-uni-bochum.de", role = c("aut")), person("Sebastian", "Jeworutzki", email="Sebastian.Jeworutzki@ruhr-uni-bochum.de", role = c("aut", "cre")), person("R Core Team", role="cph") )
Description: Function to read and write the Stata 13 file format.
URL: https://github.com/sjewo/readstata13
License: GPL-2 | file LICENSE
Imports: Rcpp (>= 0.11.2)
LinkingTo: Rcpp
ByteCompile: yes
Packaged: 2015-02-10 20:45:41 UTC; sj
Author: Jan Marvin Garbuszus [aut], Sebastian Jeworutzki [aut, cre], R Core Team [cph]
Maintainer: Sebastian Jeworutzki
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-11 07:50:08

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New package MazamaSpatialUtils with initial version 0.1.2
Type: Package
Package: MazamaSpatialUtils
Version: 0.1.2
Date: 2015-02-10
Title: Mazama Science Spatial Data Download and Utility Functions
Authors@R: c( person("Jonathan", "Callahan", email="jonathan.s.callahan@gmail.com", role=c("aut","cre")), person("Will", "Leahy", email="procterw@gmail.com", role=c("aut")) )
Author: Jonathan Callahan [aut, cre], Will Leahy [aut]
Maintainer: Jonathan Callahan
Depends: R (>= 3.1.0)
Imports: dplyr, rgdal, rvest, sp, stringr
Suggests: ISOcodes, knitr, lubridate, maps, testthat
Description: A suite of conversion scripts to create internally standardized spatial polygons dataframes. Utility scripts use these datasets to return values such as country, state, timezone, watershed, etc. associated with a set of longitude/latitude pairs. (They also make cool maps.)
License: GPL-3
VignetteBuilder: knitr
Repository: CRAN
LazyData: true
Packaged: 2015-02-10 18:40:33 UTC; jonathancallahan
NeedsCompilation: no
Date/Publication: 2015-02-11 07:48:27

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