Wed, 17 Dec 2014

New package GPareto with initial version 1.0.0
Package: GPareto
Type: Package
Title: Gaussian Processes for Pareto Front Estimation and Optimization
Version: 1.0.0
Date: 2014-12-17
Author: Mickael Binois, Victor Picheny
Maintainer: Mickael Binois
Description: Gaussian process regression models, a.k.a. kriging models, are applied to global multiobjective optimization of black-box functions. Multiobjective Expected Improvement and Stepwise Uncertainty Reduction sequential infill criteria are available. A quantification of uncertainty on Pareto fronts is provided using conditional simulations.
License: GPL-3
Depends: DiceKriging (>= 1.5.3), emoa, methods
Imports: Rcpp (>= 0.11.1), rgenoud, pbivnorm, pso, randtoolbox, KrigInv, MASS
Suggests: DiceDesign (>= 1.4)
LinkingTo: Rcpp
Packaged: 2014-12-17 09:42:42 UTC; a073501
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-17 13:08:28

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New package stpp with initial version 1.0-5
Package: stpp
Type: Package
Title: Space-Time Point Pattern simulation, visualisation and analysis
Version: 1.0-5
Date: 2014-12-11
Author: Edith Gabriel, Peter J Diggle, stan function by Barry Rowlingson
Maintainer: Edith Gabriel
Depends: R (>= 2.10), splancs, KernSmooth, spatstat
Suggests: rpanel, rgl
Description: A package for analysing, simulating and displaying space-time point patterns
License: GPL-3
LazyLoad: yes
Packaged: 2014-12-16 13:46:14 UTC; math
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-17 09:25:40

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Tue, 16 Dec 2014

New package RSNPset with initial version 0.3
Package: RSNPset
Type: Package
Title: Efficient Score Statistics For Genome-Wide SNP Set Analysis
Version: 0.3
Date: 2014-12-16
Author: Chanhee Yi, Alexander Sibley, and Kouros Owzar
Maintainer: Alexander Sibley
Description: RSNPset is an implementation of the use of efficient score statistics in genome-wide SNP set analysis with complex traits. The package provides three standard score statistics (Cox, Binomial, and Gaussian) but is easily extensible to include others. Code implementing the inferential procedure is primarily written in C++ and utilizes parallelization of the analysis to reduce runtime. A supporting function offers simple computation of observed, permutation, and FWER and FDR adjusted p-values.
License: GPL-3
Imports: fastmatch (>= 1.0-4), foreach (>= 1.4.1), doRNG (>= 1.5.3), qvalue (>= 1.34), Rcpp (>= 0.10.4)
LinkingTo: Rcpp, RcppEigen
Suggests: knitr
VignetteBuilder: knitr
Packaged: 2014-12-16 19:06:52 UTC; abs33
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-17 01:59:36

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New package refset with initial version 0.1.0
Package: refset
Type: Package
Title: Subsets with Reference Semantics
Version: 0.1.0
Date: 2014-11-20
Author: David Hugh-Jones
Maintainer: David Hugh-Jones
Description: Provides subsets with reference semantics, i.e. subsets which automatically reflect changes in the original object, and which optionally update the original object when they are changed.
License: GPL-2
NeedsCompilation: no
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, testthat
Packaged: 2014-12-16 21:42:46 UTC; david
Repository: CRAN
Date/Publication: 2014-12-17 01:57:34

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New package FPDclustering with initial version 1.0
Package: FPDclustering
Type: Package
Title: PD-Clustering and Factor PD-Clustering
Version: 1.0
Date: 2014-12-16
Author: Cristina Tortora and Paul D. McNicholas
Maintainer: Cristina Tortora
Description: Probabilistic distance clustering (PD-clustering) is an iterative, distribution free, probabilistic clustering method. PD-clustering assigns units to a cluster according to their probability of membership, under the constraint that the product of the probability and the distance of each point to any cluster centre is a constant. PD-clustering is a flexible method that can be used with non-spherical clusters, outliers, or noisy data. Facto PD-clustering (FPDC) is a recently proposed factor clustering method that involves a linear transformation of variables and a cluster optimizing the PD-clustering criterion. It allows clustering of high dimensional data sets.
Depends: ThreeWay
License: GPL (>= 2)
Packaged: 2014-12-16 18:46:17 UTC; ctortora
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-17 01:54:43

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New package rSPACE with initial version 1.0
Package: rSPACE
Type: Package
Title: Spatially-Explicit Power Analysis for Conservation and Ecology
Version: 1.0
Date: 2014-12-15
Author: Martha Ellis, Jake Ivan, Jody Tucker, Mike Schwartz
Maintainer: Martha Ellis
Description: Conducts a spatially-explicit, simulation-based power analysis for detecting trends in population abundance through occupancy-based modeling. Applicable for evaluating monitoring designs in conservation and ecological settings.
License: GPL (>= 2)
Imports: raster, RMark, ggplot2, tcltk2, sp, grid, plyr, tcltk
Packaged: 2014-12-16 18:20:03 UTC; marthamellis
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-16 22:38:08

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New package PRROC with initial version 1.0
Package: PRROC
Type: Package
Title: Precision-Recall and ROC Curves for Weighted and Unweighted Data
Version: 1.0
Date: 2014-12-16
Author: Jan Grau and Jens Keilwagen
Maintainer: Jan Grau
Description: Computes the areas under the precision-recall (PR) and ROC curve for weighted (e.g., soft-labeled) and unweighted data. In contrast to other implementations, the interpolation between points of the PR curve is done by a non-linear piecewise function. In addition to the areas under the curves, the curves themselves can also be computed and plotted by a specific S3-method.
License: GPL-3
Packaged: 2014-12-16 21:03:40 UTC; dev
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-16 22:34:59

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New package NeuralNetTools with initial version 1.0.0
Package: NeuralNetTools
Type: Package
Title: Visualization and Analysis Tools for Neural Networks
Version: 1.0.0
Date: 2014-12-10
Author: Marcus W. Beck [aut, cre]
Maintainer: Marcus W. Beck
Description: Visualization and analysis tools to aid in the interpretation of neural network models. Functions are available for plotting, quantifying variable importance, conducting a sensitivity analysis, and obtaining a simple list of model weights.
BugReports: https://github.com/fawda123/NeuralNetTools/issues
License: CC0
LazyData: true
Imports: ggplot2, neuralnet, nnet, reshape2, RSNNS, scales
Depends: R (>= 3.1.1)
Authors@R: person(given = "Marcus W.", family = "Beck", role = c("aut","cre"), email = "mbafs2012@gmail.com")
Packaged: 2014-12-16 16:06:56 UTC; Marcus
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-16 17:43:30

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New package spca with initial version 0.6.0
Package: spca
Type: Package
Title: Sparse Principal Component Analysis
Version: 0.6.0
Date: 2014-12-14
Author: Giovanni Maria Merola
Maintainer: Giovanni Merola
URL: http://github.com/merolagio/spca
BugReports: http://github.com/merolagio/spca/issues
Description: Computes Least Squares Sparse Principal Components either by a Branch-and-Bound search or with an iterative Backward Elimination algorithm. Sparse solutions can be plotted, printed and compared using the methods included.
Depends: R (>= 3.1)
VignetteBuilder: knitr
Suggests: formatR, knitr (>= 1.8.0), ggplot2, reshape2
Imports: MASS
License: GPL-3
LazyData: true
Packaged: 2014-12-16 11:39:18 UTC; Glovani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-16 13:19:52

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New package WaveletComp with initial version 1.0
Package: WaveletComp
Type: Package
Title: Computational Wavelet Analysis
Version: 1.0
Date: 2014-12-15
Author: Angi Roesch and Harald Schmidbauer
Maintainer: Angi Roesch
Description: Wavelet analysis and reconstruction of time series, cross-wavelets and phase-difference (with filtering options), significance with simulation algorithms.
Depends: R (>= 2.10)
License: GPL-2
URL: http://www.hs-stat.com/projects/WaveletComp/WaveletComp_guided_tour.pdf
Packaged: 2014-12-16 07:19:23 UTC; angi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-16 09:26:23

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New package networkD3 with initial version 0.1.1
Package: networkD3
Type: Package
Title: Tools for Creating D3 JavaScript Network Graphs from R
Description: Creates D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
Version: 0.1.1
Date: 2014-12-16
Author: Christopher Gandrud, J.J. Allaire, and B.W. Lewis
Maintainer: Christopher Gandrud
URL: http://github.com/christophergandrud/networkD3/
License: GPL (>= 3)
Depends: R (>= 3.0.0)
Imports: htmlwidgets (>= 0.3.2), plyr, rjson
Suggests: htmltools (>= 0.2.6), RCurl
Enhances: knitr, shiny
Packaged: 2014-12-16 06:52:00 UTC; christophergandrud
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-16 08:22:39

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New package BinNonNor with initial version 1.0
Package: BinNonNor
Type: Package
Title: Data Generation with Binary and Continuous Non-normal Components
Version: 1.0
Date: 2014-12-15
Author: Gul Inan, Hakan Demirtas
Maintainer: Gul Inan
Description: Generation of multiple binary and continuous non-normal variables simultaneously given the marginal characteristics and association structure based on the methodology proposed by Demirtas et al. (2012).
License: GPL (>= 2)
Depends: BB, corpcor, mvtnorm, Matrix
Packaged: 2014-12-15 19:20:02 UTC; arcelik
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-16 08:17:47

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Mon, 15 Dec 2014

New package RcppDL with initial version 0.0.3
Package: RcppDL
Type: Package
Title: Deep Learning Methods via Rcpp
Version: 0.0.3
Date: 2014-12-12
Author: Qiang Kou, Yusuke Sugomori
Maintainer: Qiang Kou
Description: This package is based on the C++ code from Yusuke Sugomori, which implements basic machine learning methods with many layers (deep learning), including dA (Denoising Autoencoder), SdA (Stacked Denoising Autoencoder), RBM (Restricted Boltzmann machine) and DBN (Deep Belief Nets).
License: GPL-3
Imports: methods, Rcpp (>= 0.11.2)
LinkingTo: Rcpp
URL: https://github.com/thirdwing/RcppDL
BugReports: https://github.com/thirdwing/RcppDL/issues
Packaged: 2014-12-15 20:35:49 UTC; qkou
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-16 01:02:30

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New package leaderCluster with initial version 1.2
Package: leaderCluster
Type: Package
Title: Leader Clustering Algorithm
Version: 1.2
Date: 2014-12-11
Author: Taylor B. Arnold
Maintainer: Taylor B. Arnold
Description: The leader clustering algorithm provides a means for clustering a set of data points. Unlike many other clustering algorithms it does not require the user to specify the number of clusters, but instead requires the approximate radius of a cluster as its primary tuning parameter. The package provides a fast implementation of this algorithm in n-dimensions using Lp-distances (with special cases for p=1,2, and infinity) as well as for spatial data using the Haversine formula, which takes latitude/longitude pairs as inputs and clusters based on great circle distances.
License: LGPL-2
Packaged: 2014-12-15 15:30:02 UTC; taylor
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-16 00:58:11

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New package ztable with initial version 0.1.0
Package: ztable
Title: Zebra-Striped Tables in LaTeX and HTML Formats
Version: 0.1.0
Authors@R: "Keon-Woong Moon [aut, cre]"
Description: Makes zebra-striped tables (tables with alternating row colors) in LaTeX and HTML formats easily from a data.frame, matrix, lm, aov, anova, glm or coxph objects.
Depends: R (>= 3.1.2)
License: GPL-2
LazyData: true
Suggests: MASS, survival, testthat, knitr
VignetteBuilder: knitr
Packaged: 2014-12-15 16:29:35 UTC; cardiomoon
Author: "Keon-Woong Moon" [aut, cre]
Maintainer: "Keon-Woong Moon"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-15 20:04:46

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Sat, 13 Dec 2014

New package qqtest with initial version 1.0
Package: qqtest
Type: Package
Title: Quantile Quantile Plots Self Calibrating For Visual Testing
Version: 1.0
Date: 2014-12-02
Authors@R: person("Wayne", "Oldford", email="rwoldford@uwaterloo.ca", role=c("aut", "cre"))
Maintainer: Wayne Oldford
Description: Provides the function qqtest which incorporates uncertainty in its qqplot display(s) so that the user might have a better sense of the evidence against the specified distributional hypothesis. qqtest draws a quantile quantile plot for visually assessing whether the data come from a test distribution that has been defined in one of many ways. The vertical axis plots the data quantiles, the horizontal those of a test distribution. The default behaviour generates 1000 samples from the test distribution and overlays the plot with pointwise interval estimates for the ordered quantiles from the test distribution. A small number of independently generated exemplar quantile plots are also overlaid. Both the interval estimates and the exemplars provide different comparative information to assess the evidence provided by the qqplot for or against the hypothesis that the data come from the test distribution (default is normal or gaussian). Finally, a visual test of significance (a lineup plot) can also be displayed to test the null hypothesis that the data come from the test distribution.
License: GPL-3
Depends: R (>= 2.10.0)
Imports: grDevices, MASS
Packaged: 2014-12-13 19:36:06 UTC; rwoldford
Author: Wayne Oldford [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-14 01:15:35

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New package rodd with initial version 0.1-1
Package: rodd
Type: Package
Title: Optimal Discriminating Designs
Version: 0.1-1
Date: 2014-10-28
Authors@R: c(person("Roman", "Guchenko", role = c("aut", "cre"), email = "RomanGuchenko@yandex.ru"))
Depends: R (>= 3.0.0)
Imports: numDeriv, quadprog, Matrix, rootSolve, matrixcalc
Suggests: mvtnorm
Description: A collection of functions for numerical construction of optimal discriminating designs. At the current moment T-optimal designs (which maximize the lower bound for the power of F-test for regression model discrimination) and their robust analogues can be calculated with the package.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2014-12-13 19:04:46 UTC; Roman
Author: Roman Guchenko [aut, cre]
Maintainer: Roman Guchenko
Repository: CRAN
Date/Publication: 2014-12-14 01:05:16

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New package mixor with initial version 1.0.1
Package: mixor
Type: Package
Title: Mixed-Effects Ordinal Regression Analysis
Version: 1.0.1
Date: 2014-12-12
Author: Donald Hedeker , Kellie J. Archer, Rachel Nordgren, Robert D. Gibbons
Maintainer: Kellie J. Archer
Description: Provides the function 'mixord' for fitting a mixed-effects ordinal and binary response models and associated methods for printing, summarizing, extracting estimated coefficients and variance-covariance matrix, and estimating contrasts for the fitted models.
License: GPL (>= 2)
Depends: R (>= 2.10)
Suggests: survival
BuildResaveData: best
Biarch: yes
NeedsCompilation: yes
LazyLoad: true
Packaged: 2014-11-12 00:26:45 UTC; kjarcher
Repository: CRAN
Date/Publication: 2014-12-13 08:02:46

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New package gemmR with initial version 1.3-2
Package: gemmR
Type: Package
Title: General Monotone Model
Version: 1.3-2
Date: 2014-09-08
Authors@R: c(person("Jeffrey", "Chrabaszcz", role = c("aut", "cre"), email = "jchrabaszcz@gmail.com"), person("Joe", "Tidwell", role = "aut"), person("Michael", "Dougherty", role = c("aut")))
LazyData: yes
Description: An R-language implementation of the General Monotone Model proposed by Michael Dougherty and Rick Thomas. It is a procedure for estimating weights for a set of independent predictors that minimize the rank-order inversions between the model predictions and some outcome.
License: GPL-3
Depends: Rcpp(>= 0.11), doMC(>= 1.3.1), foreach (>= 1.4.2)
Suggests: knitr
LinkingTo: Rcpp
VignetteBuilder: knitr
BugReports: https://github.com/jchrszcz/gemmR/issues
Collate: 'gemmquick.R' 'RcppExports.R'
Packaged: 2014-12-12 22:13:31 UTC; jchrszcz
Author: Jeffrey Chrabaszcz [aut, cre], Joe Tidwell [aut], Michael Dougherty [aut]
Maintainer: Jeffrey Chrabaszcz
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-13 08:02:40

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Fri, 12 Dec 2014

New package gimme with initial version 0.1
Package: gimme
Title: Group Iterative Multiple Model Estimation
Description: Automated identification and estimation of group- and individual-level relations in time series data from within a structural equation modeling framework.
Version: 0.1
Author: Stephanie Lane
Maintainer: Stephanie Lane
Depends: R (>= 3.0.2), lavaan (>= 0.5-17), qgraph
License: GPL-2
LazyData: yes
Packaged: 2014-12-12 15:35:00 UTC; stlane
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-12 20:34:47

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New package tcR with initial version 1.0
Package: tcR
Type: Package
Title: Data Analysis of T-cell Receptor Repertoires
Version: 1.0
Date: 2014-12-12
Author: Vadim Nazarov, Mikhail Pogorelyy
Maintainer: Vadim Nazarov
Description: Platform for the advanced analysis of T-cell receptor repertoires data and visualisation of the analysis results.
License: Apache License 2.0
Depends: R (>= 2.10), ggplot2 (>= 1.0.0), dplyr (>= 0.2), gridExtra (>= 0.9.0), reshape2 (>= 1.2.0)
Imports: utils (>= 3.1.0), Rcpp (>= 0.11.1), grid (>= 3.0.0), data.table (>= 1.9.0), gtable (>= 0.1.2), roxygen2 (>= 3.0.0), stringdist (>= 0.7.3)
LinkingTo: Rcpp
Packaged: 2014-12-12 11:34:00 UTC; n-san
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-12 14:50:19

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New package InvariantCausalPrediction with initial version 0.1-4
Package: InvariantCausalPrediction
Type: Package
Title: Invariant Causal Prediction
Version: 0.1-4
Date: 2014-12-10
Author: Nicolai Meinshausen
Depends: glmnet, mboost
Maintainer: Nicolai Meinshausen
Description: Confidence intervals for causal prediction in a regression setting. An experimental version is also available for classification.
License: GPL
Packaged: 2014-12-12 10:22:33 UTC; nicolai
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-12 14:44:35

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New package ibmdbR with initial version 1.34.3
Package: ibmdbR
Version: 1.34.3
Title: IBM In-Database Analytics for R
Author: IBM Corporation
Maintainer: Michael Wurst
Depends: R (>= 2.15.1), methods, RODBC, MASS
Description: Functionality required to efficiently use R with IBM DB2(c) for Linux, Unix and Windows as well as IBM dashDB(c). Many basic and complex R operations are pushed down into the database, which removes the main memory boundary of R and allows to take advantage of parallel processing in the underlying database.
License: GPL-3
LazyLoad: Yes
Packaged: 2014-12-12 13:10:02 UTC; mwurst
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-12 14:54:03

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New package subrank with initial version 0.9.1
Package: subrank
Type: Package
Title: Computes copula using ranks and subsampling
Version: 0.9.1
Date: 2014-12-12
Author: Jerome Collet
Maintainer: Jerome Collet
Description: essentially a discussion tool about estimation of copula using ranks and subsampling.
License: GPL (>= 3)
LazyLoad: yes
Packaged: 2014-12-11 20:15:24 UTC; collet
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-12 11:11:34

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Thu, 11 Dec 2014

New package RecordLinkage with initial version 0.4-6
Package: RecordLinkage
Version: 0.4-6
Title: Record Linkage in R
Author: Andreas Borg , Murat Sariyar
Maintainer: Andreas Borg
Contact: reclinkmainz@googlemail.com
Description: Provides functions for linking and de-duplicating data sets. Methods based on a stochastic approach are implemented as well as classification algorithms from the machine learning domain.
License: GPL (>= 2)
Depends: R (>= 2.10.0), DBI, RSQLite(>= 0.9-1), ff, ffbase
Imports: e1071, rpart, ada, ipred, stats, evd, methods, data.table (>= 1.7.8), nnet, xtable
Suggests: RUnit
LinkingTo: RSQLite
URL: https://r-forge.r-project.org/projects/recordlinkage/, http://journal.r-project.org/archive/2010-2/RJournal_2010-2_Sariyar+Borg.pdf
Collate: register-S3-classes.r RLBigData-classes.r RLResult-class.r accessor-methods.r evt.r classify.r classifySupv-methods.r genSamples.r strcmp.r compare.r getPairs.r summary.r em-methods.r internals.r em.r mygllm.r epilink-methods.r phonetics.r onAttach.r getPairs-methods.r serialization.r tools.r stochastic.r
Packaged: 2014-12-11 09:26:14 UTC; rforge
Repository: CRAN
Repository/R-Forge/Project: recordlinkage
Repository/R-Forge/Revision: 437
Repository/R-Forge/DateTimeStamp: 2014-12-11 09:20:46
Date/Publication: 2014-12-11 19:37:43
NeedsCompilation: yes

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New package EffectTreat with initial version 0.1-1
Package: EffectTreat
Type: Package
Title: Prediction of Therapeutic Success
Version: 0.1-1
Date: 2014-12-11
Author: Wim Van der Elst, Ariel Alonso & Geert Molenberghs
Maintainer: Wim Van der Elst
Description: In personalized medicine, one wants to know, for a given patient and his or her outcome for a predictor (pre-treatment variable), how likely it is that a treatment will be more beneficial than an alternative treatment. This package allows for the quantification of the predictive causal association(i.e., the association between the predictor variable and the individual causal effect of the treatment) and related metrics.
Depends:
License: GPL (>= 2)
BugReports: Wim Van der Elst
Repository: CRAN
Packaged: 2014-12-11 15:59:18 UTC; wimvde
NeedsCompilation: no
Date/Publication: 2014-12-11 19:32:48

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New package clusterCrit with initial version 1.2.4
Package: clusterCrit
Type: Package
Title: Clustering Indices
Version: 1.2.4
Date: 2014-12-11
Author: Bernard Desgraupes (University of Paris Ouest - Lab Modal'X)
Maintainer: Bernard Desgraupes
Description: compute clustering validation indices
License: GPL (>= 2)
URL: http:www.r-project.org
Collate: main.R zzz.R
Encoding: latin1
Suggests: RUnit, rbenchmark
Packaged: 2014-12-11 10:15:06 UTC; bernardo
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-11 13:20:18

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New package medflex with initial version 0.4.0
Package: medflex
Title: Flexible Mediation Analysis using Natural Effect Models
Version: 0.4.0
Date: 2014-12-10
Authors@R: c( person("Johan", "Steen", email = "johan.steen@gmail.com", role = c("aut", "cre")), person("Tom", "Loeys", email = "tom.loeys@ugent.be", role = "aut"), person("Beatrijs", "Moerkerke", email = "beatrijs.moerkerke@ugent.be", role = "aut"), person("Stijn", "Vansteelandt", email = "stijn.vansteelandt@ugent.be", role = "aut"), person("Joris", "Meys", email = "joris.meys@ugent.be", comment = "technical support", role = "ctb"), person("Theis", "Lange", email = "thlan@sund.ku.dk", comment = "valuable suggestions", role = "ctb"))
Description: medflex allows to run flexible mediation analyses using natural effect models as described in Lange, Vansteelandt and Bekaert (2012), Vansteelandt, Bekaert and Lange (2012) and Loeys, Moerkerke, De Smet, Buysse, Steen and Vansteelandt (2013).
Depends: R (>= 3.1.2), multcomp (>= 1.3-6)
License: GPL-2
LazyData: true
Imports: boot (>= 1.3-8)
Suggests: arm (>= 1.7-05), car (>= 2.0-21), gam (>= 1.09.1), glmnet (>= 1.9-8), Matrix (>= 1.1-4), rpart (>= 4.1-8), SuperLearner (>= 2.0-15), VGAM (>= 0.9-5)
Packaged: 2014-12-10 23:05:29 UTC; johansteen
Author: Johan Steen [aut, cre], Tom Loeys [aut], Beatrijs Moerkerke [aut], Stijn Vansteelandt [aut], Joris Meys [ctb] (technical support), Theis Lange [ctb] (valuable suggestions)
Maintainer: Johan Steen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-11 08:02:18

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Wed, 10 Dec 2014

New package filenamer with initial version 0.2
Package: filenamer
Type: Package
Title: Easy Management of File Names
Version: 0.2
Date: 2014-12-07
Author: David J. H. Shih
Maintainer: David J. H. Shih
Description: Create descriptive file names with ease. New file names are automatically (but optionally) time stamped and placed in date stamped directories. Streamline your analysis pipeline with input and output file names that have informative tags and proper file extensions.
URL: https://bitbucket.org/djhshih/filenamer
BugReports: https://bitbucket.org/djhshih/filenamer/issues
License: GPL (>= 3)
Suggests: io, testthat
Packaged: 2014-12-10 19:34:46 UTC; davids
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-10 23:15:50

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New package spiders with initial version 1.0
Package: spiders
Type: Package
Title: Fits predator preferences model
Version: 1.0
Date: 2014-12-04
Author: Edward A. Roualdes and Simon Bonner
Maintainer: Edward A. Roualdes
Description: Fits and simulates data from our predator preferences model
Depends: R (>= 3.0.2)
Imports: plyr
Suggests: testthat
License: GPL (>= 2.0)
Packaged: 2014-12-10 16:37:08 UTC; easy-e
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-10 21:15:29

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New package snplist with initial version 0.13
Package: snplist
Type: Package
Title: Tools to create Gene Sets
Version: 0.13
Date: 2014-12-03
Author: Chanhee Yi, Alexander Sibley, and Kouros Owzar
Maintainer: Alexander Sibley
Description: A set of functions to create SQL tables of gene and SNP information and compose them into a SNP Set, for example for use with the RSNPset package, or to export to a PLINK set.
License: GPL-3
Depends: R (>= 3.0.0), RSQLite (>= 0.11.4)
Imports: biomaRt (>= 2.16.0), Rcpp (>= 0.10.5), R.utils (>= 1.27.1), DBI (>= 0.3.1)
Suggests: knitr
LinkingTo: Rcpp
VignetteBuilder: knitr
Packaged: 2014-12-04 17:24:15 UTC; abs33
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-10 21:14:31

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New package jomo with initial version 0.1-0
Package: jomo
Type: Package
Title: A package for Multilevel Joint Modelling Multiple Imputation
Version: 0.1-0
Date: 2014-10-24
Author: Matteo Quartagno, James Carpenter
Maintainer: Matteo Quartagno
Description: Building on Schafer's pan and on standalone program REALCOM, jomo is a package for multilevel joint modelling multiple imputation. Binary and categorical variables are handled through latent normal variables and algorithms for cluster specific covariance matrices are introduced.
License: GPL-2
Suggests: BaBooN
Packaged: 2014-12-10 16:21:43 UTC; lsh366965
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-10 17:36:11

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New package bnormnlr with initial version 1.0
Package: bnormnlr
Type: Package
Title: Bayesian Estimation for Normal Heteroscedastic Nonlinear Regression Models
Version: 1.0
Date: 2014-12-08
Author: Nicolas Molano-Gonzalez, Marta Corrales Bossio, Maria Fernanda Zarate, Edilberto Cepeda-Cuervo.
Maintainer: Nicolas Molano-Gonzalez
Description: Implementation of Bayesian estimation in normal heteroscedastic nonlinear regression Models following Cepeda-Cuervo, (2001).
License: GPL-2
Depends: mvtnorm, numDeriv
Suggests: car, coda, MASS
Packaged: 2014-12-10 14:05:43 UTC; A80873475
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-10 16:26:13

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New package sprm with initial version 1.1
Package: sprm
Type: Package
Title: Sparse and Non-Sparse Partial Robust M Regression
Version: 1.1
Date: 2014-12-10
Author: Sven Serneels, BASF Corp and Irene Hoffmann
Maintainer: Irene Hoffmann
Description: Robust methods for dimension reduction and regression analysis are implemented that yield estimates with a partial least squares alike interpretability. Partial robust M regression is robust to both vertical outliers and leverage points. Sparse partial robust M regression is a related robust method with sparse coefficient estimate, and therefore with intrinsic variable selection.
License: GPL (>= 3)
Depends: ggplot2, grid
Imports: cvTools, reshape2, pcaPP
Packaged: 2014-12-10 11:00:00 UTC; hoffmann
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-10 14:41:27

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New package OneArmPhaseTwoStudy with initial version 0.1
Package: OneArmPhaseTwoStudy
Type: Package
Title: Planing, Monitoring and Evaluating Oncological Phase 2 Studies
Version: 0.1
Date: 2014-08-05
Author: Marius Wirths
Maintainer: Marius Wirths
Description: Purpose of this package is it to plan, monitor and evaluate oncological phase II studies. In general this kind of studies are single-arm trials with planned interim analysis and binary endpoint. To meet the resulting requirements, the package provides functions to calculate and evaluate "Simon's two-stage designs" and so called "subset designs". If you are unfamiliar with this package a good starting point is to take a closer look at the functions "getSolutions" and "getSolutionsSub1".
License: GPL (>= 2)
Depends: methods, Rcpp (>= 0.9.11)
LinkingTo: Rcpp
RcppModules: simon, sub1
Packaged: 2014-12-10 09:56:19 UTC; wirthsmarius
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-10 13:41:13

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Tue, 09 Dec 2014

New package timma with initial version 0.99.0
Package: timma
Type: Package
Title: Target Inhibition Interaction using Maximization and Minimization Averaging
Version: 0.99.0
Date: 2014-09-08
Author: Liye
Maintainer: Liye He
Description: Target Inhibition Interaction using Maximization/Minimization Averaging
License: Artistic License 2.0
Imports: Rcpp (>= 0.11.2), QCA (>= 1.1-3)
LinkingTo: Rcpp, RcppArmadillo
biocViews: Software, StatisticalMethod
Packaged: 2014-12-09 19:27:51 UTC; localadmin_lzhe
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-09 22:34:23

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New package smnet with initial version 1.0
Package: smnet
Type: Package
Title: Smoothing For Stream Network Data
Version: 1.0
Date: 2014-12-09
Depends: SSN, spam
Imports: splines, dfoptim, RSQLite, igraph, DBI
Author: Alastair Rushworth
Maintainer: Alastair Rushworth
Description: Fits flexible additive models to data on stream networks, taking account of flow-connectivity of the network. Models are fit using penalised least squares.
License: GPL-2
LazyLoad: yes
Packaged: 2014-12-09 15:36:43 UTC; alastair
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-09 17:51:37

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New package MRSP with initial version 0.4.3
Package: MRSP
Type: Package
Title: Multinomial Response Models with Structured Penalties
Version: 0.4.3
Date: 2014-12-09
Author: Wolfgang Poessnecker
Maintainer: Wolfgang Poessnecker
Description: Fits regularized multinomial response models using penalized loglikelihood methods with structured penalty terms.
License: GPL (>= 2)
Depends: methods, parallel, compiler, matrixcalc, Formula, R (>= 2.14.1)
Imports: base
LazyData: yes
NeedsCompilation: yes
Repository: CRAN
Collate: MRSP-prespecifier.r MRSP-classes-7.r FISTA-classes-3.r FISTA-generics-2.r FISTA-27.r MRSP-methods-15.r MRSP-cfunctions-2.r MRSP-helpers-21.r MRSP-fista-7.r MRSP-family-23.r MRSP-fit-39.r MRSP-formula-2.r MRSP-3.r zzz.r
Packaged: 2014-12-09 14:08:16 UTC; poessnecker
Date/Publication: 2014-12-09 16:11:35

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New package iFes with initial version 1.0
Package: iFes
Type: Package
Title: Incremental Feature Selection Algorithm accelerated by GPU
Version: 1.0
Date: 2014-12-05
Depends: R (>= 2.10), ROCR, parallel, doParallel, foreach
SystemRequirements: Nvidia's CUDA toolkit (>= release 5.5)
Author: Qinghan Meng, Fengfeng Zhou
Maintainer: Qinghan Meng
Description: Incremental gene selection algorithm(iFes) expands the screening targets in each step of the forward stepwise algorithm, and proposes a novel feature selection algorithm iFes with both high accuracies and low feature numbers. Logistic regression classification algorithm accelerated by NVIDIA GPU is utilized to measure how good the currently chosen feature subset is.
License: GPL-2
Packaged: 2014-12-09 13:45:29 UTC; qhmeng
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-09 18:02:13

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New package htmlwidgets with initial version 0.3.2
Package: htmlwidgets
Type: Package
Title: HTML Widgets for R
Version: 0.3.2
Date: 2014-12-03
Author: Ramnath Vaidyanathan, Joe Cheng, JJ Allaire, Yihui Xie, and Kenton Russell
Maintainer: JJ Allaire
Description: A framework for creating HTML widgets that render in various contexts including the R console, R Markdown documents, and Shiny web applications.
License: MIT + file LICENSE
VignetteBuilder: knitr
Imports: htmltools (>= 0.2.6), RJSONIO, yaml
Suggests: knitr (>= 1.8)
Enhances: shiny (>= 0.10.2.1),
Packaged: 2014-12-09 12:55:41 UTC; jjallaire
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-09 14:54:14

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New package urltools with initial version 0.5
Package: urltools
Type: Package
Title: Vectorised Tools for URL Handling and Parsing
Version: 0.5
Date: 2014-12-07
Author: Oliver Keyes
Maintainer: Oliver Keyes
Description: A toolkit for handling URLs that so far includes functions for URL encoding and decoding, parsing, and parameter extraction. All functions are designed to be both fast and entirely vectorised. It is intended to be useful for people dealing with web-related datasets, such as server-side logs, although may be useful for other situations involving large sets of URLs.
License: MIT + file LICENSE
LinkingTo: Rcpp
Imports: Rcpp
Suggests: testthat, knitr
BugReports: https://github.com/Ironholds/urltools/issues
VignetteBuilder: knitr
Packaged: 2014-12-09 02:42:01 UTC; ironholds
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-09 07:12:40

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New package RDataCanvas with initial version 0.1
Package: RDataCanvas
Type: Package
Title: Basic Runtime Support for Datacanvas.io
Version: 0.1
Authors@R: c(person("Xiaolin", "Zhang", role = c("aut", "cre"), email = "leoncamel@gmail.com"))
Description: Provides basic functionalities for writing a module for http://datacanvas.io. The http://datacanvas.io is a big data analytics platform that helps data scientists to build, manage and share data pipelines.
Depends: R (>= 3.0.0)
License: BSD_3_clause + file LICENSE
URL: https://github.com/DataCanvasIO/RDataCanvas
BugReports: https://github.com/DataCanvasIO/RDataCanvas/issues
LazyData: true
Imports: jsonlite
Suggests: testthat
Packaged: 2014-12-09 05:57:45 UTC; xiaolin
Author: Xiaolin Zhang [aut, cre]
Maintainer: Xiaolin Zhang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-09 08:43:09

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New package GeneticSubsetter with initial version 0.5
Package: GeneticSubsetter
Type: Package
Title: Identify Favorable Subsets of Germplasm Collections
Version: 0.5
Date: 2015-11-24
Author: Ryan C. Graebner and Alfonso Cuesta-Marcos
Maintainer: Ryan C. Graebner
Description: Finds subsets of sets of genotypes with a high mean Polymorphism Information Content (PIC), and Mean of Transformed Kinships (MTK), measures that can indicate a subset would be beneficial for rare-trait discovery and genome-wide association scanning, respectively.
License: GPL (>= 2)
Imports: rrBLUP
Packaged: 2014-12-08 23:24:39 UTC; ryan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-09 06:56:03

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Mon, 08 Dec 2014

New package MetSizeR with initial version 1.1
Package: MetSizeR
Type: Package
Title: GUI Tool for Estimating Sample Sizes for Metabolomic Experiments
Version: 1.1
Date: 2013-09-08
Author: Gift Nyamundanda, Isobel Claire Gormley, Yue Fan, William M Gallagher, Lorraine Brennan
Maintainer: Gift Nyamundanda
Description: An easy to use Graphical User Interface for estimating sample sizes required for metabolomic experiments even when experimental pilot data is not available.
Depends: mvtnorm,MetabolAnalyze,cairoDevice, gWidgets, gWidgetsRGtk2
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-12-08 12:21:11 UTC; Gift
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-08 22:15:50

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New package V8 with initial version 0.1
Package: V8
Type: Package
Title: Embedded JavaScript Engine
Version: 0.1
Date: 2014-12-07
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
Description: V8 is an open source JavaScript engine developed by Google.
License: MIT + file LICENSE
URL: http://github.com/jeroenooms/v8, https://code.google.com/p/v8/
BugReports: http://github.com/jeroenooms/V8/issues
SystemRequirements: V8 development library: libv8-dev (deb), v8-devel (rpm)
NeedsCompilation: yes
Imports: Rcpp, jsonlite
LinkingTo: Rcpp
Packaged: 2014-12-08 03:59:36 UTC; jeroen
Repository: CRAN
Date/Publication: 2014-12-08 07:09:10

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New package thermocouple with initial version 1.0.0
Package: thermocouple
Type: Package
Title: Temperature Measurement with Thermocouples, RTD and IC Sensors
Version: 1.0.0
Encoding: UTF-8
Authors@R: c(person(given = "Jose", family = "Gama", role = c("aut","cre"),email = "rxprtgama@gmail.com"))
Description: Temperature measurement data, equations and methods for Thermocouples, wire RTD, thermistors and IC thermometers
License: GPL (>= 3)
LazyData: yes
Depends: R (>= 2.7.0)
Packaged: 2014-12-07 23:27:28.378 UTC; poky
Author: Jose Gama [aut, cre]
Maintainer: Jose Gama
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-08 07:17:11

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New package seqminer with initial version 3.4
Package: seqminer
Type: Package
Title: Efficiently Read Sequence Data (VCF format, BCF format and METAL format) into R
Version: 3.4
Date: 2014-12-07
Author: Xiaowei Zhan and Dajiang Liu , with contributions of Heng Li (this author wrote tabix and with MIT license we include tabix source codes).
Maintainer: Xiaowei Zhan
Description: Integrate sequencing data (VCF/BCF) or meta-analysis results in R
Copyright: We have used the following software and made minimal necessary changes: Tabix, Heng Li (MIT license). We removed standard IO related functions, e.g. printf, fprintf ; also changed its un-safe pointer arithmetics.
License: GPL | file LICENSE
URL: http://seqminer.genomic.codes
Packaged: 2014-12-07 21:22:35 UTC; zhanxw
Repository: CRAN
Date/Publication: 2014-12-08 07:38:24
Depends: stringr
Suggests: testthat, SKAT
SystemRequirements: zlib headers and libraries, optionally also bzip2 and POSIX-compliant regex functions.
NeedsCompilation: yes

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New package RSurveillance with initial version 0.1.0
Package: RSurveillance
Type: Package
Title: Design and Analysis of Disease Surveillance Activities
Version: 0.1.0
Date: 2014-11-15
Author: Evan Sergeant
Maintainer: Evan Sergeant
Description: This package provides a range of functions for the design and analysis of disease surveillance activities. These functions were originally developed for animal health surveillance activities but can be equally applied to aquatic animal, wildlife, plant and human health surveillance activities. Utilities are included for sample size calculation and analysis of representative surveys for disease freedom, risk-based studies for disease freedom and for prevalence estimation.
License: GPL-2 | GPL-3
LazyLoad: yes
Imports: epitools, epiR
Packaged: 2014-12-08 01:07:28 UTC; evan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-08 07:06:21

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Sun, 07 Dec 2014

New package dashboard with initial version 0.1.0
Package: dashboard
Type: Package
Title: Interactive Data Visualization with D3.js
Version: 0.1.0
Date: 2014-12-05
Author: Johann Laurent
Maintainer: Johann Laurent.
Description: The dashboard package allows users to create web pages which display interactive data visualizations working in a standard modern browser. It displays them locally using the Rook server. Nor knowledge about web technologies nor Internet connection are required. D3.js is a JavaScript library for manipulating documents based on data. D3 helps the dashboard package bring data to life using HTML, SVG and CSS.
Depends: R (>= 2.13.0)
Imports: Rook
License: GPL-2
NeedsCompilation: no
Packaged: 2014-12-07 20:05:36 UTC; johannlaurent
Repository: CRAN
Date/Publication: 2014-12-07 22:48:31

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New package rtdists with initial version 0.2-6
Package: rtdists
Type: Package
Title: Response time distributions
Depends: R (>= 3.0.0)
Suggests: testthat
Imports: evd, msm, gsl
Description: Provides response time distributions (density/PDF, distribution function/CDF, and random generation): (a) Ratcliff diffusion model based on C code by Andreas and Jochen Voss and (b) linear ballistic accumulator (LBA) with different distribution underlying the drift rate.
URL: https://github.com/rtdists/rtdists/
License: GPL (>= 3)
Authors@R: c( person(given="Scott", family="Brown", role=c("aut")), person(given="Matthew", family="Gretton", role=c("aut")), person(given="Andrew", family="Heathcote", role=c("aut")), person(given="Andreas", family="Voss", role=c("ctb")), person(given="Jochen", family="Voss", role=c("ctb")), person(given="Andrew", family="Terry", role=c("ctb")), person(given="Henrik", family="Singmann", email="singmann+rtdists@gmail.com", role=c("aut", "cre")) )
Version: 0.2-6
Date: 2014-12-06
Packaged: 2014-12-06 22:45:16 UTC; Henrik
Author: Scott Brown [aut], Matthew Gretton [aut], Andrew Heathcote [aut], Andreas Voss [ctb], Jochen Voss [ctb], Andrew Terry [ctb], Henrik Singmann [aut, cre]
Maintainer: Henrik Singmann
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-07 06:44:55

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Sat, 06 Dec 2014

New package knockoff with initial version 0.1
Package: knockoff
Type: Package
Title: Knockoff Filter
Version: 0.1
Date: 2014-12-05
Author: Rina Barber, Emmanuel Candes, Evan Patterson
Maintainer: Evan Patterson
Description: The knockoff filter for controlling the false discovery rate
License: GPL-3
Imports: glmnet, RJSONIO
Suggests: lars, knitr, testthat
VignetteBuilder: knitr
Packaged: 2014-12-06 00:33:17 UTC; epatters
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-06 15:09:57

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New package algstat with initial version 0.0.2
Package: algstat
Type: Package
Title: Algebraic statistics in R
Version: 0.0.2
Date: 2014-12-04
Authors@R: c(person("David", "Kahle", role = c("aut","cre"), email = "david.kahle@gmail.com"), person("Luis", "Garcia-Puente", role = "aut", email = "lgarcia@shsu.edu"))
Maintainer: David Kahle
Description: algstat provides functionality for algebraic statistics in R. Current applications include exact inference in log-linear models for contingency table data, analysis of ranked and partially ranked data, and general purpose tools for multivariate polynomials, building on the mpoly package. To aid in the process, algstat has ports to Macaulay2, Bertini, LattE-integrale and 4ti2.
Depends: mpoly
LinkingTo: Rcpp
Imports: stringr, reshape2, Rcpp
License: GPL-2
SystemRequirements: Optionally Latte-integrale, Bertini, and Macaulay2. Cygwin is required for each of the above for Windows users. See INSTALL file for details.
Packaged: 2014-12-06 01:17:27 UTC; david_kahle
Author: David Kahle [aut, cre], Luis Garcia-Puente [aut]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-06 02:23:38

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Fri, 05 Dec 2014

New package NISTunits with initial version 1.0.0
Package: NISTunits
Type: Package
Title: Fundamental Physical Constants and Unit Conversions from NIST
Version: 1.0.0
Encoding: UTF-8
Authors@R: c(person(given = "Jose", family = "Gama", role = c("aut","cre"),email = "rxprtgama@gmail.com"))
Description: Fundamental physical constants (Quantity, Value, Uncertainty, Unit) for SI (International System of Units) and non-SI, plus unit conversions Based on the data from NIST (National Institute of Standards and Technology)
License: GPL (>= 3)
Depends: R (>= 2.7.0)
Packaged: 2014-12-05 22:45:28.711 UTC; poky
Author: Jose Gama [aut, cre]
Maintainer: Jose Gama
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-06 00:00:05

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New package EpiResTest with initial version 1.0
Package: EpiResTest
Type: Package
Title: Latent Residuals Test for Epidemiology and Ecology Models
Version: 1.0
Date: 2014-07-07
Author: Max S. Y. Lau; Jeffrey Pollock
Maintainer: Max S. Y. Lau
Description: Latent residual tests recently developed (Lau et al. 2014) which are specifically designed to measure the goodness-of-fit of different model components of a general spatial S-E-I-R model commonly used in epidemiology and ecology studies. More restrictive model classes such as S-I-R can be accommodated. Note that although each test is specifically designed to be sensitive to one particular component of a spatio-temporal model, they are not theoretically restricted to only testing these specific aspects and can be used as a general model assessment tool like any other conventional model selection techniques. The underlying functions are coded in C++ so they should be generally quick.
Note: Under the null hypothesis that the model is correct, the residuals follow distribution U(0,1). The examples only compute a single set of residuals given actual values of most of the model components which are typically required to be imputed in data augmentation schemes such as MCMC in which multiple sets of residuals can be imputed. Only the raw residuals are outputted, a natural summary statistics of the residual samples is the p-value which may be computed using Kolmogorov-Smirnov or Anderson-Darling test.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.2)
LinkingTo: Rcpp, RcppArmadillo
Suggests: RUnit, ADGofTest
Packaged: 2014-12-05 14:12:57 UTC; sl451
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-05 15:29:39

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New package archiDART with initial version 1.0
Package: archiDART
Type: Package
Title: Plant Root System Architecture Analysis Using DART Output Files
Version: 1.0
Date: 2014-12-05
Author: Benjamin M Delory, Caroline Baudson, Yves Brostaux, Patrick du Jardin, Loic Pages, Pierre Delaplace
Maintainer: Benjamin M Delory
Description: Analysis of complex plant root system architectures using the output files created by Data Analysis of Root Tracings (DART), an open-access software dedicated to the study of plant root architecture and development across time series (Le Bot et al (2010) DART: a software to analyse root system architecture and development from captured images, Plant and Soil, 326, 261--273).
License: GPL-2
Imports: stats, utils, graphics, grDevices
Packaged: 2014-12-05 09:14:22 UTC; Benjamin Delory
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-05 11:00:19

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Thu, 04 Dec 2014

New package rstackdeque with initial version 1.1
Package: rstackdeque
Type: Package
Title: Persistent Fast Amortized Stack and Queue Data Structures
Version: 1.1
Date: 2014-12-01
URL: https://github.com/oneilsh/rstackdeque
BugReports: https://github.com/oneilsh/rstackdeque/issues
Author: Shawn T. O'Neil
Maintainer: Shawn T. O'Neil
Description: Provides fast, persistent (side-effect-free) stack, queue and deque (double-ended-queue) data structures. While deques include a superset of functionality provided by queues, in these implementations queues are more efficient in some specialized situations. See the documentation for rstack, rdeque, and rpqueue for details.
License: MIT + file LICENSE
Suggests: testthat
Depends: utils
Packaged: 2014-12-04 20:03:38 UTC; soneil
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-05 01:31:28

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New package acid with initial version 1.0
Package: acid
Type: Package
Title: Analysing Conditional Distributions of Income
Version: 1.0
Date: 2014-11-18
Author: Alexander Sohn
Maintainer: Alexander Sohn
Description: Functions for the analysis of income distributions for subgroups of the population as defined by a set of variables like age, gender, region, etc. This entails a Kolmogorov-Smirnov test for a mixture distribution as well as functions for moments, inequality measures and entropy measures of income distributions. This package thus aides the analysis of income inequality by offering tools for the exploratory analysis of income distributions at the disaggregated level.
Depends: gamlss,gamlss.dist,Hmisc
Suggests: ineq
License: GPL-3
Packaged: 2014-12-04 10:03:30 UTC; admin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-05 01:30:20

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New package textreg with initial version 0.1
Package: textreg
Type: Package
Title: n-gram Text Regression, aka Concise Comparative Summarization
Version: 0.1
Date: 2014-01-16
Author: Luke Miratrix
Maintainer: Luke Miratrix
Description: Function for sparse regression on raw text, regressing a labeling vector onto a feature space consisting of all possible phrases.
License: GPL (>= 2)
Depends: R (>= 2.10),
Imports: tm (>= 0.6), NLP (>= 0.1-3), Rcpp (>= 0.10.6)
Suggests: corrplot
LinkingTo: Rcpp
Packaged: 2014-12-04 15:36:01 UTC; lmiratrix
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-04 17:52:34

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New package RStars with initial version 1.0
Package: RStars
Type: Package
Title: Access to the Digital Universe Data set API
Version: 1.0
Date: 2014-12-03
Author: William Kyle Hamilton
Maintainer: William Kyle Hamilton
Description: Access to the Digital Universe Data set API pulls data on exoplants, stars, and galaxies.
Depends: R (>= 3.0.3), RJSONIO, RCurl
License: GPL-3
URL: https://github.com/kylehamilton/RStars
BugReports: https://github.com/kylehamilton/RStars/issues
Packaged: 2014-12-04 01:38:06 UTC; whamilton
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-04 08:29:55

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Wed, 03 Dec 2014

New package sensitivityPStrat with initial version 1.0-6
Package: sensitivityPStrat
Type: Package
Title: Principal Stratification Sensitivity Analysis Functions
Version: 1.0-6
Date: 2014-11-04
Author: Charles Dupont, Bryan Shepherd
Maintainer: Charles Dupont
Description: This package provides functions to perform principal stratification sensitivity analyses on datasets.
Imports: stats, survival
License: GPL
LazyLoad: yes
Packaged: 2014-12-03 15:40:49 UTC; dupontct
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-04 00:14:37

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New package panelaggregation with initial version 0.1
Package: panelaggregation
Title: Aggregate Longitudinal Survey Data
Description: Aggregate Business Tendency Survey Data (and other qualitative surveys) to time series at various aggregation levels. Run aggregation of survey data in a speedy, re-traceable and a easily deployable way. Aggregation is substantially accelerated by use of data.table. Panelaggregation aims at providing an interface that is more geared towards survey researchers.
Version: 0.1
Authors@R: as.person(c('Matthias Bannert [aut, cre]','Gabriel Bucur [aut]'))
Author: Matthias Bannert [aut, cre], Gabriel Bucur [aut]
Maintainer: Matthias Bannert
Depends: R (>= 3.0.0), data.table (>= 1.9.4)
License: GPL-2
LazyData: true
Packaged: 2014-12-03 14:04:09 UTC; mbannert
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-03 17:25:49

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New package ClimClass with initial version 1.0
Package: ClimClass
Type: Package
Title: Climate Classification According To Several Indices
Version: 1.0
Date: 2014-11-27
Author: Emanuele Eccel, Emanuele Cordano, Giambattista Toller
Maintainer: Emanuele Eccel
Description: Classification of climate according to Koeppen - Geiger, of aridity indices, of continentality indices, and of water balance after Thornthwaite. Drawing climographs: Thornthwaite, Peguy, Bagnouls-Gaussen.
License: GPL (>= 2)
Depends: R(>= 2.10.0),geosphere,ggplot2,reshape2
Suggests: stringr
URL: https://github.com/ecor/ClimClass
Packaged: 2014-12-03 12:36:13 UTC; ecor
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-03 17:01:22

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Tue, 02 Dec 2014

New package retistruct with initial version 0.5.9
Package: retistruct
License: CC BY-NC-SA 4.0
Title: Retistruct - Retinal Reconstruction Program
Authors@R: c(person("David C.", "Sterratt", role=c("aut", "cre", "cph"), email="david.c.sterratt@ed.ac.uk"), person("Daniel", "Lyngholm", role=c("aut", "cph")))
Description: Program to reconstruct retinae from flattened retinae in which there are incisions and tears
Version: 0.5.9
URL: http://retistruct.r-forge.r-project.org/
BugReports: https://github.com/davidcsterratt/retistruct/issues
Date: 2014-12-02
Depends: R (>= 3.1.0)
Imports: foreign, RImageJROI, png, ttutils, sp, geometry (>= 0.2-1), RTriangle (>= 1.6-0.4), rgl, R.matlab
Suggests: testthat, gWidgetsRGtk2, gWidgets, cairoDevice
Packaged: 2014-12-02 16:59:26 UTC; sterratt
Author: David C. Sterratt [aut, cre, cph], Daniel Lyngholm [aut, cph]
Maintainer: David C. Sterratt
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-02 20:19:11

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New package hnp with initial version 1.0
Package: hnp
Type: Package
Title: Half-Normal Plots with Simulation Envelopes
Version: 1.0
Date: 2014-11-27
Authors@R: c(person("Rafael", "de Andrade Moral", role = c("aut", "cre"), email = "rafael_moral@yahoo.com.br"), person("John", "Hinde", role = "aut"), person("Clarice", "Garcia Borges Demetrio", role = "aut"))
Author: Rafael de Andrade Moral [aut, cre], John Hinde [aut], Clarice Garcia Borges Demetrio [aut]
Maintainer: Rafael de Andrade Moral
Depends: R (>= 3.0.0), MASS (>= 7.3-35)
Suggests: lme4, gamlss, gamlss.dist, pscl, nnet, aods3, VGAM, glmmADMB, latticeExtra
Additional_repositories: http://www.hafro.is/~arnima/repos
Description: Generates (half-)normal plots with simulation envelopes using different diagnostics from a range of different fitted models. A few example datasets are included.
License: GPL (>= 2)
Packaged: 2014-12-02 18:49:32 UTC; Rafael
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-02 20:22:29

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New package rncl with initial version 0.2.0
Package: rncl
Title: An interface to the Nexus Class Library
Version: 0.2.0
Date: 2014-12-01
Authors@R: c(person("Francois", "Michonneau", role=c("aut", "cre"), email="francois.michonneau@gmail.com"), person("Ben", "Bolker", role=c("aut")), person("Mark", "Holder", role=c("aut", "cre")), person("Paul", "Lewis", role=c("aut", "cre")), person("Brian", "O'Meara", role=c("aut", "cre")))
Maintainer: Francois Michonneau
Description: An interface to the Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. It provides elements of the file that can be used to build phylogenetic objects such as ape's phylo or phylobase's phylo4(d).
Imports: Rcpp (>= 0.11.0), ape
Suggests: testthat
LinkingTo: Rcpp
Depends: R (>= 3.1.1)
License: BSD_2_clause + file LICENSE
URL: https://github.com/fmichonneau/rncl
BugReports: https://github.com/fmichonneau/rncl/issues
LazyData: true
Packaged: 2014-12-02 16:52:49 UTC; francois
Author: Francois Michonneau [aut, cre], Ben Bolker [aut], Mark Holder [aut, cre], Paul Lewis [aut, cre], Brian O'Meara [aut, cre]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-02 18:23:19

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New package radar with initial version 1.0.0
Package: radar
Type: Package
Title: Fundamental Formulas for Radar
Version: 1.0.0
Encoding: UTF-8
Authors@R: c(person(given = "Jose'", family = "Gama", role = c("aut","cre"),email = "rxprtgama@gmail.com"), person(given = "Nick", family = "Guy", role = c("aut")))
Description: Fundamental formulas for Radar, for attenuation, range, velocity, effectiveness, power, scatter, doppler, geometry, radar equations, etc. Based on Nick Guy's Python package PyRadarMet
License: GPL (>= 3)
Depends: R (>= 2.7.0)
Packaged: 2014-12-02 15:31:46.027 UTC; poky
Author: Jose' Gama [aut, cre], Nick Guy [aut]
Maintainer: Jose' Gama
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-02 17:04:26

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New package RPANDA with initial version 1.0
Package: RPANDA
Version: 1.0
Date: 2014-02-04
Type: Package
Title: Phylogenetic ANalyses of DiversificAtion
Depends: R (>= 2.14.2), ape, picante, pspline, deSolve
Suggests: testthat
Encoding: UTF-8
Author: Hélène Morlon [aut, cre, cph]
Authors@R: c(person("Hélène", "Morlon", role = c("aut", "cre", "cph"), email = "morlon@biologie.ens.fr"))
Maintainer: Hélène Morlon
Description: Implements fits of diversification models to phylogenetic data. See Morlon et al. PLoSB (2010), Morlon et al. PNAS (2011), Condamine et al. Eco Lett (2013), Morlon et al. Eco Lett (2014) and Manceau et al. (in prep).
License: GPL-2
URL: https://github.com/hmorlon/PANDA
Packaged: 2014-12-02 11:24:04 UTC; helenemorlon
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-02 14:36:08

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New package choroplethrAdmin1 with initial version 1.0.0
Package: choroplethrAdmin1
Type: Package
Title: Contains an Administrative-Level-1 Map of the World
Version: 1.0.0
Date: 2014-12-02
Author: Ari Lamstein
Maintainer: Ari Lamstein
Description: Contains an administrative-level-1 map of the world. Administrative-level-1 is the generic term for the largest sub-national subdivision of a country. This package was created for use with the choroplethr package.
License: BSD_3_clause + file LICENSE
URL: https://groups.google.com/forum/#!forum/choroplethr
Imports: ggplot2
Packaged: 2014-12-02 11:47:09 UTC; arilamstein
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-02 14:30:53

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New package ASPBay with initial version 1.0
Package: ASPBay
Type: Package
Title: Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data
Depends: hexbin, Rcpp
LinkingTo: Rcpp, RcppArmadillo
Version: 1.0
Date: 2014-11-18
Author: Claire Dandine-Roulland
Maintainer: Claire Dandine-Roulland
Description: This package allows to make inference on the properties of causal genetic variants in linkage disequilibrium with genotyped markers. In a first step, we select a subset of variants using a score statistic for affected sib-pairs. In a second step, on the selected subset, we make inference on causal genetic variants in the considered region.
License: GPL-2
Packaged: 2014-12-02 11:25:15 UTC; dandine
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-02 14:28:23

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New package ARTool with initial version 0.9.3
Package: ARTool
Title: Aligned Rank Transform
Version: 0.9.3
Date: 2014-11-20
Authors@R: c(person("Matthew", "Kay", role = c("aut", "cre"), email = "mjskay@uw.edu"), person("Jacob O.", "Wobbrock", role = "aut", email = "wobbrock@uw.edu"))
Maintainer: Matthew Kay
Description: Aligned Rank Transform for nonparametric factorial ANOVAs
Depends: lme4, car
Imports: plyr, pbkrtest
Suggests: testthat, lsmeans
License: GPL (>= 2)
BugReports: https://github.com/mjskay/ARTool/issues/new
URL: https://github.com/mjskay/ARTool
Packaged: 2014-12-02 09:30:57 UTC; Matthew
Author: Matthew Kay [aut, cre], Jacob O. Wobbrock [aut]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-02 12:24:50

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New package secrlinear with initial version 1.0.3
Package: secrlinear
Type: Package
Title: Spatially Explicit Capture-Recapture for Linear Habitats
Version: 1.0.3
Depends: R (>= 3.0.0), secr(>= 2.9.1), sp, igraph
Imports: parallel, maptools, rgeos, MASS
Suggests: knitr, secrdesign
VignetteBuilder: knitr
Date: 2014-12-02
Author: Murray Efford
Maintainer: Murray Efford
Description: Tools for spatially explicit capture-recapture analysis of animal populations in linear habitats, extending package 'secr'
License: GPL (>= 2)
LazyData: yes
URL: http://www.otago.ac.nz/density
Packaged: 2014-12-02 07:18:35 UTC; Murray
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-02 09:45:03

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New package netgsa with initial version 1.0
Package: netgsa
Type: Package
Title: Network-based Gene Set Analysis
Version: 1.0
Date: 2014-12-01
Author: Ali Shojaie and Jing Ma
Maintainer: Jing Ma
Description: Functions for carrying out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data
Depends: cvTools, corpcor, glasso, glmnet, igraph
Suggests: MASS
License: GPL (>= 2)
LazyLoad: yes
URL: http://arxiv.org/abs/1411.7919
Packaged: 2014-12-02 02:14:06 UTC; jingma
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-02 07:29:28

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New package MOrder with initial version 0.1
Package: MOrder
Title: Check Time Homogeneity and Markov Chain Order
Description: MOrder provide functions to check time homogeneity and order of markov chain by using chi-squared test, AIC value and BIC value.
Version: 0.1
Date: 2014-03-04
Author: Akshay Chougule , Dr Robert Canales
Maintainer: Dr Robert Canales
License: GPL-2
LazyData: true
Packaged: 2014-12-01 22:49:02 UTC; akshaychougule
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-02 07:23:02

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Mon, 01 Dec 2014

New package wrassp with initial version 0.1.3
Package: wrassp
Version: 0.1.3
Title: Interface to the ASSP Library
Authors@R: as.person(c( "Raphael Winkelmann [aut, cre]", "Lasse Bombien [aut]", "Michel Scheffers [aut]"))
Description: wrassp is a wrapper around Michel Scheffers's libassp (Advanced Speech Signal Processor). The libassp library aims at providing functionality for handling speech signal files in most common audio formats and for performing analyses common in phonetic science/speech science. This includes the calculation of formants, fundamental frequency, root mean square, auto correlation, a variety of spectral analyses, zero crossing rate, filtering etc. This wrapper provides R with a large subset of libassp's signal processing functions and provides them to the user in a (hopefully) user-friendly manner.
Depends: R (>= 3.1.1)
VignetteBuilder: knitr
Suggests: compare(>= 0.2.4), knitr(>= 1.7), testthat(>= 0.7.1.99)
License: GPL (>= 3)
URL: https://github.com/IPS-LMU/wrassp
BugReports: https://github.com/IPS-LMU/wrassp/issues
Packaged: 2014-12-01 17:13:26 UTC; raphaelwinkelmann
Author: Raphael Winkelmann [aut, cre], Lasse Bombien [aut], Michel Scheffers [aut]
Maintainer: Raphael Winkelmann
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-02 00:17:08

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New package RegressionFactory with initial version 0.7
Package: RegressionFactory
Type: Package
Title: Expander Functions for Generating Full Gradient and Hessian from Single- and Multi-Slot Base Distributions
Version: 0.7
Date: 2014-12-01
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani
Description: The expander functions rely on the mathematics developed for the Hessian-definiteness invariance theorem for linear projection transformations of variables, described in authors' paper, to generate the full, high-dimensional gradient and Hessian from the lower-dimensional derivative objects. This greatly relieves the computational burden of generating the regression-function derivatives, which in turn can be fed into any optimization routine that utilizes such derivatives. The theorem guarantees that Hessian definiteness is preserved, meaning that reasoning about this property can be performed in the low-dimensional space of the base distribution. This is often a much easier task than its equivalent in the full, high-dimensional space. Definiteness of Hessian can be useful in selecting optimization/sampling algorithms such as Newton-Raphson optimization or its sampling equivalent, the Stochastic Newton Sampler. Finally, in addition to being a computational tool, the regression expansion framework is of conceptual value by offering new opportunities to generate novel regression problems.
License: GPL (>= 2)
Suggests: sns
Packaged: 2014-12-01 17:23:57 UTC; amahani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-01 22:00:48

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New package paleofire with initial version 1.1.5
Package: paleofire
Type: Package
Title: Analysis of Charcoal Records from the Global Charcoal Database
Version: 1.1.5
Date: 2014-11-24
Author: Global Paleofire Working Group
Maintainer: Olivier Blarquez
Description: Tools to extract and analyse charcoal sedimentary data stored in the Global Charcoal Database. Main functionalities includes data extraction and sites selection, transformation and interpolation of the charcoal records as well as compositing.
URL: http://gpwg.org
License: GPL (>= 2)
Imports: locfit, raster, ggplot2, plyr, rgdal, lattice
Suggests: gtools,caTools,pscl,agricolae,Imap,sp,rworldmap,RColorBrewer
Depends: R(>= 2.10.0), methods, GCD
LazyLoad: yes
LazyData: no
Encoding: UTF-8
Packaged: 2014-11-30 18:41:01 UTC; Olivier
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-01 18:09:29

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New package GCPM with initial version 1.1.1
Package: GCPM
Type: Package
Title: Generalized Credit Portfolio Model
Version: 1.1.1
Date: 2014-12-01
Author: Kevin Jakob
Maintainer: Kevin Jakob
Description: The package helps to analyze the default risk of credit portfolios. Commonly known models, like CreditRisk+ or the CreditMetrics model are implemented in their very basic settings. The portfolio loss distribution can be achieved either by simulation or analytically in case of the classic CreditRisk+ model. Models are only implemented to respect losses caused by defaults, i.e. migration risk is not included. The package structure is kept flexible especially with respect to distributional assumptions in order to quantify the sensitivity of risk figures with respect to several assumptions. Therefore the package can be used to determine the credit risk of a given portfolio as well as to quantify model sensitivities.
License: GPL-2
Imports: Rcpp (>= 0.11.2), methods, RcppProgress(>= 0.1)
LinkingTo: Rcpp, RcppProgress
SystemRequirements: Windows, Linux, OS X
Packaged: 2014-12-01 09:43:48 UTC; Kevin_Jakob
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-01 18:13:42

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New package ssd with initial version 0.3
Package: ssd
Type: Package
Title: Sample Size Determination (SSD) for Unordered Categorical Data
Version: 0.3
Date: 2014-11-30
Author: Junheng Ma and Jiayang Sun
Maintainer: Junheng Ma
Description: ssd calculates the sample size needed to detect the differences between two sets of unordered categorical data.
License: GPL-2
Packaged: 2014-12-01 05:48:18 UTC; Junheng Ma
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-01 09:28:44

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New package rngSetSeed with initial version 0.3-1
Package: rngSetSeed
Type: Package
Title: Seeding the Default RNG With a Numeric Vector
Version: 0.3-1
Date: 2014-12-01
Author: Petr Savicky
Maintainer: Petr Savicky
Description: A function setVectorSeed() is provided. Its argument is a numeric vector of an arbitrary nonzero length, whose components have integer values from [0, 2^32-1]. The input vector is transformed using AES (Advanced Encryption Standard) algorithm into an initial state of Mersenne-Twister random number generator. The function provides a better alternative to the R base function set.seed() if the input vector is a single integer. Initializing a stream of random numbers with a vector is a convenient way to obtain several streams, each of which is identified by several integer indices.
License: GPL-3
Packaged: 2014-12-01 08:01:26 UTC; petr
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-01 11:07:13

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New package mipfp with initial version 1.0
Package: mipfp
Type: Package
Title: Multidimensional Iterative Proportional Fitting
Version: 1.0
Date: 2014-11-26
Authors@R: c(person("Johan", "Barthelemy", role = c("aut", "cre"),email = "johan@uow.edu.au"),person("Thomas", "Suesse", role = "aut"),person("Mohammad", "Namazi-Rad", role = "ctb"))
Author: Johan Barthelemy [aut, cre], Thomas Suesse [aut], Mohammad Namazi-Rad [ctb]
Maintainer: Johan Barthelemy
Description: An implementation of the iterative proportional fitting procedure for updating a N-dimensional array with respect to given target marginal distributions (which, in turn can be multi-dimensional)
License: GPL-2
URL: www.r-project.org
Packaged: 2014-12-01 00:10:22 UTC; johan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-01 09:10:27

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New package lintr with initial version 0.2.0
Package: lintr
Title: Static R Code Analysis
Version: 0.2.0
Authors@R: "Jim Hester [aut, cre]"
URL: https://github.com/jimhester/lintr
BugReports: https://github.com/jimhester/lintr/issues
Description: Checks adherence to a given style, syntax errors and possible semantic issues. Supports on the fly checking of R code edited with Emacs, Vim and Sublime Text.
Depends: R (>= 3.1.1)
Imports: rex, crayon, codetools, stringdist, testthat, digest, igraph
License: MIT + file LICENSE
LazyData: true
Suggests: knitr
VignetteBuilder: knitr
Packaged: 2014-12-01 02:53:22 UTC; james.hester
Author: "Jim Hester" [aut, cre]
Maintainer: "Jim Hester"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-01 09:09:24

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Sun, 30 Nov 2014

New package moonBook with initial version 0.1.0
Package: moonBook
Title: Functions and Datasets for the Book by Keon-Woong Moon
Version: 0.1.0
Authors@R: "Keon-Woong Moon [aut, cre]"
Description: Several analysis-related functions for the book entitled "R statistics and graph for medical articles" (written in Korean), version 1, by Keon-Woong Moon with Korean demographic data with several plot functions.
Depends: R (>= 3.1.1)
License: GPL-2
LazyData: true
Imports: DescTools, survival
Suggests: testthat, knitr, ggplot2
VignetteBuilder: knitr
Packaged: 2014-11-30 12:06:53 UTC; cardiomoon
Author: "Keon-Woong Moon" [aut, cre]
Maintainer: "Keon-Woong Moon"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-30 17:16:21

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New package rDEA with initial version 1.0-1
Package: rDEA
Version: 1.0-1
Title: Robust Data Envelopment Analysis (DEA) for R
Description: Data Envelopment Analysis for R, estimating robust DEA scores without and with environmental variables and doing returns-to-scale tests.
Authors@R: c(person("Jaak", "Simm", role = c("aut", "cre"), email = "jaak.simm@gmail.com"), person("Galina", "Besstremyannaya", role = c("aut") ))
Imports: slam (>= 0.1-9), truncreg(>= 0.2-1), truncnorm(>= 1.0-7), maxLik
Suggests: testthat
SystemRequirements:
License: GPL-2 | GPL-3
URL: https://github.com/jaak-s/rDEA
Packaged: 2014-11-30 00:21:27 UTC; jaak
Author: Jaak Simm [aut, cre], Galina Besstremyannaya [aut]
Maintainer: Jaak Simm
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-30 07:56:09

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Sat, 29 Nov 2014

New package simrel with initial version 1.0-1
Encoding: latin1
Package: simrel
Type: Package
Title: Linear Model Data Simulation and Design of Computer Experiments
Version: 1.0-1
Date: 2014-11-28
Author: Solve Sb
Maintainer: Solve Sb
Description: Facilitates data simulation from a random regression model where the data properties can be controlled by a few input parameters. The data simulation is based on the concept of relevant latent components and relevant predictors, and was developed for the purpose of testing methods for variable selection for prediction. Included are also functions for designing computer experiments in order to investigate the effects of the data properties on the performance of the tested methods. The design is constructed using the Multi-level Binary Replacement (MBR) design approach which makes it possible to set up fractional designs for multi-factor problems with potentially many levels for each factor.
License: GPL-2
Repository: CRAN
Depends: FrF2, sfsmisc
Suggests: pls
Packaged: 2014-11-28 23:11:24 UTC; solvsa
NeedsCompilation: no
Date/Publication: 2014-11-29 07:59:54

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New package rcrossref with initial version 0.2.0
Package: rcrossref
Title: R Client for Various CrossRef APIs
Description: R client for various CrossRef APIs, including metadata search with their old and search APIs, get citations in various formats (including bibtex, citeproc-json, rdf-xml, etc.), convert DOIs to PMIDs, and vice versa, get citations for DOIs, and get links to full text of articles when available.
Version: 0.2.0
License: MIT + file LICENSE
Date: 2014-11-28
Authors@R: c(person("Carl", "Boettiger", role = "aut"), person("Ted", "Hart", role = "aut"), person("Scott", "Chamberlain", role = c("aut", "cre"), email = "myrmecocystus@gmail.com"), person("Karthik", "Ram", role = "aut"))
URL: https://github.com/ropensci/rcrossref
BugReports: https://github.com/ropensci/rcrossref/issues
VignetteBuilder: knitr
Imports: jsonlite, XML, httr, plyr, bibtex, dplyr
Suggests: testthat, roxygen2 (>= 4.0.1), knitr
Packaged: 2014-11-29 00:16:59 UTC; sacmac
Author: Carl Boettiger [aut], Ted Hart [aut], Scott Chamberlain [aut, cre], Karthik Ram [aut]
Maintainer: Scott Chamberlain
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-29 08:01:05

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New package diffeR with initial version 0.0-1
Package: diffeR
Type: Package
Title: Difference Metrics for Comparing Pairs of Maps
Version: 0.0-1
Date: 2014-11-28
Author: Robert Gilmore Pontius Jr. , Al Santacruz
Maintainer: Al Santacruz
Depends: R (>= 2.14.0), rgdal, raster, methods, ggplot2
Description: Difference metrics for comparing pairs of maps representing real or categorical variables at original and multiple resolutions
License: GPL (>= 2)
Encoding: latin1
Packaged: 2014-11-28 18:54:36 UTC; Al
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-29 07:50:18

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Fri, 28 Nov 2014

New package highfrequency with initial version 0.4
Package: highfrequency
Version: 0.4
Date: 2014-11-25
Title: Tools For Highfrequency Data Analysis
Author: Kris Boudt [aut, cre], Jonathan Cornelissen [aut], Scott Payseur [aut], Giang Nguyen [ctb], Maarten Schermer [ctb]
Maintainer: Kris Boudt
Description: Provide functionality to manage, clean and match highfrequency trades and quotes data, calculate various liquidity measures, estimate and forecast volatility, and investigate microstructure noise and intraday periodicity.
License: GPL (>= 2)
Depends: R (>= 2.12.0), xts, zoo
Suggests: robustbase, cubature, mvtnorm, chron, timeDate, quantmod, MASS, sandwich, numDeriv, FKF, BMS, rugarch
LazyLoad: yes
Packaged: 2014-11-28 09:19:49 UTC; kboudt
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-28 11:27:28

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New package EnsemblePenReg with initial version 0.6
Package: EnsemblePenReg
Type: Package
Title: Extensible Classes and Methods for Penalized-Regression-based Integration of Base Learners
Version: 0.6
Date: 2014-11-25
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani
Description: Extending the base classes and methods of EnsembleBase package for Penalized-Regression-based (Ridge and Lasso) integration of base learners. Default implementation uses cross-validation error to choose the optimal lambda (shrinkage parameter) for the final predictor. The package takes advantage of the file method provided in EnsembleBase package for writing estimation objects to disk in order to circumvent RAM bottleneck. Special save and load methods are provided to allow estimation objects to be saved to permanent files on disk, and to be loaded again into temporary files in a later R session. Users and developers can extend the package by extending the generic methods and classes provided in EnsembleBase package as well as this package.
License: GPL (>= 2)
Depends: EnsembleBase
Imports: parallel,methods,glmnet
Packaged: 2014-11-28 06:57:09 UTC; amahani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-28 09:31:26

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Thu, 27 Nov 2014

New package NormPsy with initial version 1.0.2
Package: NormPsy
Type: Package
Title: Normalisation of psychometric tests
Version: 1.0.2
Date: 2014-05-28
Author: Cecile Proust-Lima, Viviane Philipps
Maintainer: Cecile Proust-Lima
Description: This package provides functions for normalizing psychometric test scores. The normalization aims at correcting the metrological properties of the psychometric tests such as the ceiling and floor effects and the curvilinearity (unequal interval scaling). The package also provides functions to compute and plot predictions in the natural scale of the psychometric test from the estimates of a linear mixed model estimated on the normalized scores.
License: GPL
Depends: R (>= 2.9.0)
Imports: lcmm (>= 1.6.4)
Packaged: 2014-11-27 20:56:50 UTC; cecile
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-27 23:19:56

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New package EnsemblePCReg with initial version 0.6
Package: EnsemblePCReg
Type: Package
Title: Extensible Package for Principal-Component-Regression-based Integration of Base Learners
Version: 0.6
Date: 2014-11-25
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani
Description: This package extends the base classes and methods of EnsembleBase package for Principal-Components-Regression-based (PCR) integration of base learners. Default implementation uses cross-validation error to choose the optimal number of PC components for the final predictor. The package takes advantage of the file method provided in EnsembleBase package for writing estimation objects to disk in order to circumvent RAM bottleneck. Special save and load methods are provided to allow estimation objects to be saved to permanent files on disk, and to be loaded again into temporary files in a later R session. Users and developers can extend the package by extending the generic methods and classes provided in EnsembleBase package as well as this package.
License: GPL (>= 2)
Depends: EnsembleBase
Imports: parallel,methods
Packaged: 2014-11-26 22:37:10 UTC; amahani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-28 00:21:18

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New package cmprskQR with initial version 0.9.0
Package: cmprskQR
Version: 0.9.0
Date: 2014-11-26
Title: Analysis of Competing Risks Using Quantile Regressions
Author: Stephan Dlugosz, based on code from Limin Peng and Ruosha Li
Maintainer: Stephan Dlugosz
Depends: R (>= 2.13.0)
Imports: survival, quantreg
Description: Estimation, testing and regression modeling of subdistribution functions in competing risks using quantile regressions, as described in Peng and Fine JP (2009), Competing risks quantile regression, JASA, 104:1440-1453
License: GPL (>= 2)
URL: http://www.r-project.org
NeedsCompilation: yes
Repository: CRAN
Packaged: 2014-11-27 15:09:46 UTC; sdl
Date/Publication: 2014-11-27 18:38:56

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New package SSrat with initial version 1.0
Package: SSrat
Type: Package
Title: Two-dimensional sociometric status determination with rating scales
Version: 1.0
Date: 2014-09-09
Author: Hans Landsheer
Maintainer: Hans Landsheer
Description: SSRAT is a computer program for two-dimensional sociometric status determination with rating scales. For each person assessed, SSRAT computes probability distributions of the total scores for `sympathy' (S), `antipathy' (A), `social preference' (P) and `social impact' (I), and applies the criteria for sociometric status categorization.
License: GPL-2
Depends: plyr, sna
LazyData: yes
Packaged: 2014-11-27 14:18:47 UTC; lands101
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-27 16:04:43

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New package orderedLasso with initial version 1.7
Package: orderedLasso
Title: Ordered Lasso and Time-lag Sparse Regression
Version: 1.7
Author: Jerome Friedman, Xiaotong Suo and Robert Tibshirani
Description: Ordered lasso and time-lag sparse regression. Ordered Lasso fits a linear model and imposes an order constraint on the coefficients. It writes the coefficients as positive and negative parts, and requires positive parts and negative parts are non-increasing and positive. Time-Lag Lasso generalizes the ordered Lasso to a general data matrix with multiple predictors. For more details, see Suo, X.,Tibshirani, R., (2014) 'An Ordered Lasso and Sparse Time-lagged Regression'.
Maintainer: Xiaotong Suo
Depends: R (>= 3.0.0), Matrix
Imports: Iso,quadprog,ggplot2,reshape2
License: GPL-2
Packaged: 2014-11-27 07:18:25 UTC; xiaotong
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-27 08:32:37

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New package cqrReg with initial version 1.0
Package: cqrReg
Type: Package
Title: Quantile, Composite Quantile Regression and Regularized Versions
Version: 1.0
Date: 2014-11-07
Author: Jueyu Gao & Linglong Kong
Maintainer: Jueyu Gao
Description: Estimate quantile regression(QR) and composite quantile regression (cqr) and with adaptive lasso penalty using interior point (IP), majorize and minimize(MM), coordinate descent (CD), and alternating direction method of multipliers algorithms(ADMM).
License: GPL (>= 2)
Depends: Matrix,Rmosek
Imports: Rcpp (>= 0.10.0)
LinkingTo: Rcpp,RcppArmadillo
Packaged: 2014-11-27 00:30:38 UTC; billy
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-27 07:39:36

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Wed, 26 Nov 2014

New package rclinicaltrials with initial version 1.4
Package: rclinicaltrials
Type: Package
Title: Download Aggregate Trial Information and Results from ClinicalTrials.gov
Description: ClinicalTrials.gov is a registry and results database of publicly and privately supported clinical studies of human participants conducted around the world. Users can search for information about and results from those trials. This provides a set of functions to interact with the search and download features. Results are downloaded to temporary directories and returned as R objects.
Version: 1.4
Date: 2014-11-25
Author: Michael C Sachs
Maintainer: Michael C Sachs
Depends: R (>= 3.0.0)
License: MIT + file LICENSE
Imports: httr, XML, plyr
Suggests: devtools, knitr, roxygen2, testthat, ggplot2
VignetteBuilder: knitr
LazyData: true
Packaged: 2014-11-26 16:03:28 UTC; sachsmc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 18:37:28

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New package pointdensityP with initial version 0.1
Package: pointdensityP
Title: Point density for geospatial data
Version: 0.1
Author: "Paul Evangelista and Dave Beskow "
Maintainer: Paul Evangelista
Description: pointdensity returns a density count and the temporal average for every point in the original list. The dataframe returned includes four columns: lat, lon, count, and date_avg. The "lat" column is the original latitude data; the "lon" column is the original longitude data; the "count" is the density count of the number of points within a radius of radius*grid_size (the neighborhood); and the date_avg column includes the average date of each point in the neighborhood.
Depends: R (>= 3.1.1)
License: MIT + file LICENSE
LazyData: true
Packaged: 2014-11-26 15:07:34 UTC; Paul.Evangelista
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 18:39:20

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New package kpodclustr with initial version 1.0
Package: kpodclustr
Title: Method for Clustering Partially Observed Data
Version: 1.0
Authors@R: as.person(c( "Jocelyn T. Chi [aut, cre]", "Eric C. Chi [ctb]" ))
Description: The kpodclustr package implements the k-POD method for clustering partially observed data.
URL: http://jocelynchi.com/kpodclustr
Depends: R (>= 3.1.0), clues
License: MIT + file LICENSE
LazyData: true
Packaged: 2014-11-26 15:37:47 UTC; jocelyn
Author: Jocelyn T. Chi [aut, cre], Eric C. Chi [ctb]
Maintainer: Jocelyn T. Chi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 18:33:47

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New package EstSimPDMP with initial version 1.2
Package: EstSimPDMP
Type: Package
Title: Estimation and Simulation for PDMPs
Version: 1.2
Date: 2014-11-25
Author: Romain Azais
Maintainer: Romain Azais
Description: This package deals with the estimation of the jump rate for piecewise-deterministic Markov processes (PDMPs), from only one observation of the process within a long time. The main functions provide an estimate of this function. The state space may be discrete or continuous. The associated paper has been published in Scandinavian Journal of Statistics and is given in references. Other functions provide a method to simulate random variables from their (conditional) hazard rate, and then to simulate PDMPs.
License: GPL (>= 2)
Packaged: 2014-11-26 14:50:50 UTC; azais
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 18:53:19

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New package BayesianAnimalTracker with initial version 1.0
Package: BayesianAnimalTracker
Type: Package
Title: Bayesian Melding of GPS and DR Path for Animal Tracking
Version: 1.0
Date: 2014-11-07
Author: Yang (Seagle) Liu
Maintainer: Yang (Seagle) Liu
Suggests: TrackReconstruction
Description: Bayesian melding approach to combine the GPS observations and Dead-Reckoned path for an accurate animal's track, or equivalently, use the GPS observations to correct the Dead-Reckoned path. It can take the measurement errors in the GPS observations into account and provide uncertainty statement about the corrected path. The main calculation can be done by the BMAnimalTrack function.
License: GPL (>= 2)
Packaged: 2014-11-26 17:37:12 UTC; User
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 18:57:31

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New package timeseriesdb with initial version 0.1
Package: timeseriesdb
Title: Store and Organize Time Series in a Database
Description: An R package to store and organize time series and their multi-lingual meta information in a database. The timeseriesdb package suggests a simple yet powerful database structure to store a large amount of time series in a relational PostgreSQL database. The package provides an interface to the R user to create, update and delete time series.
Version: 0.1
Authors@R: 'Matthias Bannert [aut, cre]'
Depends: R (>= 3.0.0)
Suggests: RPostgreSQL
Imports: DBI
License: GPL-2
LazyData: true
Maintainer: 'Matthias Bannert'
Packaged: 2014-11-26 14:02:06 UTC; mbannert
Author: 'Matthias Bannert' [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 15:40:25

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