Mon, 20 Oct 2014

New package restlos with initial version 0.1-3
Package: restlos
Type: Package
Title: Robust Estimation of Location and Scatter
Version: 0.1-3
Date: 2014-10-13
Author: Steffen Liebscher and Thomas Kirschstein
Maintainer: Steffen Liebscher
Description: The restlos package provides algorithms for robust estimation of location and scatter based on minimum spanning trees (pMST), self-organizing maps (Flood Algorithm), and Delaunay triangulations (RDELA). The functions are also suitable for outlier detection.
Depends: som, rgl, geometry, igraph
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: no
Repository: CRAN
Packaged: 2014-10-20 07:58:57 UTC; Steffen
X-CRAN-Comment: Archived on 2014-10-03 as depends on nnclust which has been archived.
Date/Publication: 2014-10-20 10:30:59

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New package commentr with initial version 0.1
Package: commentr
Type: Package
Title: Print Nicely Formatted Comments for use in Script Files
Version: 0.1
License: GPL-2
Date: 2014-10-13
Author: Erik Bulow
Maintainer: Erik Bulow
Description: Functions to produce nicely formatted comments to use in R-scripts (or Latex/HTML/markdown etc). A comment with formatting is printed to the console and can then be copied to a script.
Imports: stringr
Suggests: testthat
BugReports: https://github.com/cancercentrum/commentr/issues
Packaged: 2014-10-20 07:46:08 UTC; erikbulow
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-20 10:30:16

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Sat, 18 Oct 2014

New package multispatialCCM with initial version 1.0
Package: multispatialCCM
Title: Multispatial Convergent Cross Mapping
Version: 1.0
Date: 2014-10-18
Author: Adam Clark
Maintainer: Adam Clark
Depends: R (>= 3.0.2)
Description: The multispatial convergent cross mapping algorithm can be used as a test for causal associations between pairs of processes represented by time series. This is a combination of convergent cross mapping (CCM), described in Sugihara et al., 2012, Science, 338, 496-500, and dew-drop regression, described in Hsieh et al., 2008, American Naturalist, 171, 71–80. The algorithm allows CCM to be implemented on data that are not from a single long time series. Instead, data can come from many short time series, which are stitched together using bootstrapping.
License: GPL (>= 2)
Encoding: UTF-8
Packaged: 2014-10-18 23:48:53 UTC; atclark
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-19 01:55:59

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New package logconPH with initial version 1.0
Package: logconPH
Type: Package
Title: CoxPH Model with Log Concave Baseline Distribution
Version: 1.0
Date: 2014-08-19
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman
Description: Computes a cox PH model with a log concave baseline distribution. If no covariates are provided, estimates the log concave NPMLE. Built specifically for interval censored data, where data is a n by 2 matrix with [i, 1] as the left side of the interval for subject i and [i,2] as right side. Uncensored data can be entered by setting [i,1] = [i,2]. Alternatively, this can also handle uncensored data. If all the data is uncensored, you may enter data as a length(n) vector.
License: GPL-2
Packaged: 2014-10-18 23:32:43 UTC; Cliff
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-19 01:49:27

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New package landpred with initial version 1.0
Package: landpred
Type: Package
Title: Landmark Prediction of a Survival Outcome
Version: 1.0
Author: Layla Parast
Maintainer: Layla Parast
Description: This package includes functions for landmark prediction of a survival outcome incorporating covariate and short-term event information. For more information about landmark prediction please see: Parast, Layla, Su-Chun Cheng, and Tianxi Cai. Incorporating short-term outcome information to predict long-term survival with discrete markers. Biometrical Journal 53.2 (2011): 294-307.
License: GPL
Imports: survival
Packaged: 2014-10-17 22:28:12 UTC; parast
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-18 06:36:04

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Fri, 17 Oct 2014

New package RMKdiscrete with initial version 0.1
Package: RMKdiscrete
Version: 0.1
Date: 2014-10-17
Title: Sundry Discrete Probability Distributions
Author: Robert M. Kirkpatrick
Maintainer: Robert M. Kirkpatrick
Description: Sundry discrete probability distributions and helper functions.
Depends: stats, R (>= 2.15.0)
NeedsCompilation: yes
Repository: CRAN
License: GPL (>= 2)
Packaged: 2014-10-17 16:15:33 UTC; Rob
Date/Publication: 2014-10-17 20:23:16

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New package highTtest with initial version 1.0
Package: highTtest
Type: Package
Title: Simultaneous Critical Values for t-Tests in Very High Dimensions
Version: 1.0
Date: 2014-10-14
Authors@R: c(person("Hongyuan", "Cao", role = c("aut"), email = "caohong@missouri.edu"), person("Michael", "Kosorok", role = c("aut"), email = "kosorok@unc.edu"), person("Shannon","Holloway", role=c("aut","cre"), email="sthollow@ncsu.edu"))
Description: Implements the method developed by Cao and Kosorok (2011) for the significance analysis of thousands of features in high-dimensional biological studies. It is an asymptotically valid data-driven procedure to find critical values for rejection regions controlling the k-familywise error rate, false discovery rate, and the tail probability of false discovery proportion.
License: GPL-2
Depends: methods, colorfulVennPlot
Packaged: 2014-10-17 16:31:13 UTC; sthollow
Author: Hongyuan Cao [aut], Michael Kosorok [aut], Shannon Holloway [aut, cre]
Maintainer: Shannon Holloway
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-17 19:54:38

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New package sisVIVE with initial version 1.0
Package: sisVIVE
Type: Package
Title: Some Invalid Some Valid Instrumental Variables Estimator
Version: 1.0
Date: 2014-07-31
Author: Hyunseung Kang
Maintainer: Hyunseung Kang
Depends: lars
Suggests: MASS
Description: Selects invalid instruments amongst a candidate of potentially bad instruments. The algorithm selects potentially invalid instruments and provides an estimate of the causal effect between exposure and outcome. The paper, Instrumental Variables Estimation with Some Invalid Instruments and its Application to Mendelian Randomization by Hyunseung Kang, Anru Zhang, T. Tony Cai, and Dylan S. Small (on arXiv) has more details on this procedure.
License: GPL-2
Packaged: 2014-10-17 14:29:30 UTC; khyuns
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-17 17:39:17

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New package MRH with initial version 1.0
Package: MRH
Type: Package
Title: Multi-Resolution Estimation of the Hazard Rate
Version: 1.0
Date: 2013-10-28
Author: Yolanda Hagar, Yuanting Chen, Vanja Dukic
Maintainer: Yolanda Hagar
Description: Used on survival data to jointly estimate the hazard rate and the effects of covariates on failure times.
License: GPL-2
Depends: survival, KMsurv
Suggests: R.rsp
VignetteBuilder: R.rsp
Imports: coda, HI
Packaged: 2014-10-17 15:44:27 UTC; Yolanda
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-17 17:52:12

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New package mdscore with initial version 0.1-2
Package: mdscore
Type: Package
Title: Improved Score Tests for Generalized Linear Models
Version: 0.1-2
Date: 2014-10-15
Depends: R (>= 3.1.1), MASS
Suggests: Sleuth3
Authors@R: c(person("Antonio Hermes M.","da Silva-Junior", email = "hermes@ccet.ufrn.br", role = c("aut", "cre")), person("Damiao N.","da Silva", email = "damiao@ccet.ufrn.br", role = "aut"), person("Silvia L. P.", "Ferrari", email = "silviaferrari.usp@gmail.com", role = "ctb"))
Author: Antonio Hermes M. da Silva-Junior [aut, cre], Damiao N. da Silva [aut], Silvia L. P. Ferrari [ctb]
Maintainer: Antonio Hermes M. da Silva-Junior
Description: A set of functions to obtain modified score test for generalized linear models.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Packaged: 2014-10-17 12:28:47 UTC; mlfd58
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-17 17:50:40

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New package likert with initial version 1.2
Package: likert
Type: Package
Title: Functions to analyze and visualize likert type items
Version: 1.2
Date: 2014-09-28
Author: Jason Bryer , Kimberly Speerschneider
Maintainer: Jason Bryer
URL: http://jason.bryer.org/likert, http://github.com/jbryer/likert
BugReports: https://github.com/jbryer/likert/issues
Description: Functions to analyze and visualize likert type items
License: GPL
LazyLoad: yes
VignetteBuilder: utils
Depends: R (>= 3.0),ggplot2,xtable
Imports: psych,reshape,gridExtra,grid,plyr
Suggests: devtools,shiny
Packaged: 2014-10-17 14:01:18 UTC; jbryer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-17 17:43:09

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New package ecoval with initial version 1.0
Package: ecoval
Type: Package
Title: Procedures for Ecological Assessment of Surface Waters
Version: 1.0
Date: 2014-10-17
Author: Nele Schuwirth and Peter Reichert with contributions by Simone Langhans
Maintainer: Nele Schuwirth
Description: Functions for evaluating and visualizing ecological assessment procedures for surface waters containing physical, chemical and biological assessments in the form of value functions.
License: GPL (>= 2)
Depends: utility, rivernet
LazyData: true
Packaged: 2014-10-17 14:19:43 UTC; schuwine
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-17 17:36:36

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New package CLME with initial version 1.0-1
Package: CLME
Title: Constrained Inference for Linear Mixed Effects Models.
Version: 1.0-1
Depends: R (>= 3.0.2)
Imports: MASS, quadprog, shiny, methods, Iso
Suggests: nnet
Date: 2014-09-09
Description: Implements constrained inference for linear mixed effects models using residual bootstrap methodology.
Author: Casey M. Jelsema
Maintainer: Casey M. Jelsema
BugReports: https://github.com/jelsema/CLME/issues
BuildVignettes: true
LazyLoad: yes
License: GPL-2 | GPL-3
Packaged: 2014-10-17 16:02:45 UTC; jelsemacm
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-17 18:22:17

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New package pBrackets with initial version 1.0
Package: pBrackets
Version: 1.0
Date: 2014-10-17
Title: Plot Brackets
Author: Andreas Schulz
Maintainer: Andreas Schulz
Depends: R (>= 3.0.0)
Imports: grid
Description: Adds different kinds of brackets to a plot, including braces, chevrons, parentheses or square brackets.
License: GPL (>= 2.0)
Packaged: 2014-10-17 09:30:23 UTC; scu9a
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-17 13:08:28

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New package segmag with initial version 1.2.2
Package: segmag
Type: Package
Version: 1.2.2
Date: 2014-10-06
Title: Determine Event Boundaries in Event Segmentation Experiments
Maintainer: Frank Papenmeier
Author: Frank Papenmeier [aut, cre], Konstantin Sering [ctb]
Authors@R: c(person("Frank","Papenmeier", role=c("aut","cre"), email="frank.papenmeier@uni-tuebingen.de"), person("Konstantin","Sering", role="ctb"))
Description: This package contains functions that help to determine event boundaries in event segmentation experiments by bootstrapping a critical segmentation magnitude under the null hypothesis that all key presses were randomly distributed across the experiment. Segmentation magnitude is defined as the sum of Gaussians centered at the times of the segmentation key presses performed by the participants. Within a participant, the maximum of the overlaid Gaussians is used to prevent an excessive influence of a single participant on the overall outcome (e.g. if a participant is pressing the key multiple times in succession). Further functions are included, such as plotting the results.
License: GPL (>= 3)
Suggests: testthat
Imports: Rcpp (>= 0.11.0)
LinkingTo: Rcpp
Packaged: 2014-10-06 15:55:49 UTC; fpapenmeier
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-17 10:30:45

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Thu, 16 Oct 2014

New package rivernet with initial version 1.0
Package: rivernet
Type: Package
Title: Read, Analyze and Plot River Networks
Version: 1.0
Date: 2014-10-16
Author: Peter Reichert
Maintainer: Peter Reichert
Description: Functions for reading, analysing and plotting river networks. For this package, river networks consist of sections and nodes with associated attributes, e.g. to characterise their morphological, chemical and biological state. The package provides functions to read this data from text files, to analyse the network structure and network paths and regions consisting of sections and nodes that fulfill prescribed criteria, and to plot the river network and associated properties.
License: GPL (>= 2)
LazyData: true
Packaged: 2014-10-16 07:39:29 UTC; reichert
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-16 23:51:16

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New package enigma with initial version 0.1.0
Package: enigma
Title: R Client for the Enigma API
Description: Enigma (https://enigma.io) holds many public datasets from governments, companies, universities, and organizations. Enigma provides an API for data, metadata, and statistics on each of the datasets. enigma is an R client to interact with the Enigma API, including getting the data and metadata for datasets in Enigma, as well as collecting statistics on datasets. In addition, you can download a gzipped csv file of a dataset if you want the whole dataset. An API key from Enigma is required to use enigma.
Version: 0.1.0
Date: 2014-10-16
Authors@R: c(person("Scott", "Chamberlain", role = c("aut", "cre"), email = "myrmecocystus@gmail.com"))
License: MIT + file LICENSE
LazyData: true
Imports: httr, jsonlite, plyr
Suggests: testthat
Packaged: 2014-10-16 21:25:40 UTC; sacmac
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-17 00:42:42

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New package statar with initial version 0.1
Package: statar
Title: Tools Inspired by Stata to Clean, Explore and Join Datasets
Version: 0.1
Authors@R: person("Matthieu","Gomez", email = "mattg@princeton.edu", role = c("aut", "cre"))
Description: statar includes a set of functions for vectors: mode, tag, bin and winsorize. statar includes a set of functions for data.tables: summarize (in tables or graphs), panel data operations (lag, fill in gaps, fill in missing values) and SQL-type joins.
License: GPL-2
URL: https://github.com/matthieugomez/statar
BugReports: https://github.com/matthieugomez/statar/issues
Depends: R (>= 3.1.0)
Imports: data.table, dplyr (>= 0.3), ggplot2, grid, Hmisc, lazyeval, lubridate, matrixStats, stringr, tidyr
Suggests: knitr
VignetteBuilder: knitr
Packaged: 2014-10-16 15:26:12 UTC; Matthieu
Author: Matthieu Gomez [aut, cre]
Maintainer: Matthieu Gomez
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-16 22:56:33

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New package RCMIP5 with initial version 1.0
Package: RCMIP5
Title: Tools for Manipulating and Summarizing CMIP5 Data
Description: Working with CMIP5 data can be tricky, forcing scientists to write custom scripts and programs. The `RCMIP5` package aims to ease this process, providing a standard, robust, and high-performance set of scripts to (i) explore what data have been downloaded, (ii) identify missing data, (iii) average (or apply other mathematical operations) across experimental ensembles, (iv) produce both temporal and spatial statistical summaries, (v) regrid data, and (vi) produce easy-to-work-with graphical and data summaries.
Imports: abind (>= 1.4-0), plyr (>= 1.8.1), reshape2 (>= 1.4), foreach (>= 1.4.2), digest
Depends: R (>= 2.11.0)
Suggests: ggplot2 (>= 0.9.3), ncdf4 (>= 1.9), ncdf (>= 1.6), doParallel (>= 1.0.8), fields(>= 7.1), testthat (>= 0.9), knitr
Version: 1.0
Authors@R: c( person("Ben", "Bond-Lamberty", role = c("aut")), person("Kathe", "Todd-Brown", role = c("aut", "cre"), email = "ktoddbrown@gmail.com") )
License: MIT + file LICENSE
VignetteBuilder: knitr
Packaged: 2014-10-15 03:07:51 UTC; ben
Author: Ben Bond-Lamberty [aut], Kathe Todd-Brown [aut, cre]
Maintainer: Kathe Todd-Brown
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-16 14:03:50

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New package RcmdrPlugin.steepness with initial version 0.3-2
Package: RcmdrPlugin.steepness
Type: Package
Title: Steepness Rcmdr Plug-in
Version: 0.3-2
Date: 2014-29-09
Author: David Leiva & Han de Vries
Maintainer: David Leiva
Depends: Rcmdr (>= 2.1-2), tcltk, steepness
Description: This package provides a GUI for the steepness package, it is written as an Rcmdr plug-in.
License: GPL (>= 2)
Packaged: 2014-09-29 21:07:02 UTC; dleivaur
NeedsCompilation: no
X-CRAN-Comment: Archived on 2013-03-23 and again on 2014-05-30 as steepness was.
Repository: CRAN
Date/Publication: 2014-10-16 14:05:53

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New package logbin with initial version 1.0
Package: logbin
Title: Relative Risk Regression Using the Log Binomial Model
Description: Methods for fitting log-link GLMs and GAMs for binomial data. The package uses EM-type algorithms with more stable convergence properties than standard methods.
Version: 1.0
Date: 2014-10-16
Author: Mark Donoghoe
Maintainer: Mark Donoghoe
Depends: R (>= 3.0.1)
Imports: splines, glm2
License: GPL (>= 2)
LazyData: true
Packaged: 2014-10-16 03:19:53 UTC; mdonoghoe
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-16 07:58:44

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Wed, 15 Oct 2014

New package rfoaas with initial version 0.0.4
Package: rfoaas
Type: Package
Title: R Interface to FOAAS
Version: 0.0.4
Date: 2014-10-15
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
Description: R access to the FOAAS (F... Off As A Service) web service
License: GPL (>= 2)
Packaged: 2014-10-15 10:55:44.845568 UTC; edd
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-16 01:17:17

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New package metaMix with initial version 0.1
Package: metaMix
Title: Bayesian Mixture Analysis for Metagenomic Community Profiling
Version: 0.1
Author: Sofia Morfopoulou
Maintainer: Sofia Morfopoulou
Depends: R (>= 3.0.1)
Imports: data.table (>= 1.9.2), Matrix, gtools, Rmpi, ggplot2
Suggests: knitr
VignetteBuilder: knitr
Description: metaMix resolves complex metagenomic mixtures by analysing deep sequencing data, using a Mixture Model based approach. The use of parallel Monte Carlo Markov chains for the exploration of the species space enables the identification of the set of species more likely to contribute to the mixture.
License: GPL-3
LazyData: true
SystemRequirements: Open MPI (>=1.4.3)
Packaged: 2014-10-15 11:36:19 UTC; psofaki
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-16 01:26:14

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New package windex with initial version 1.0
Package: windex
Type: Package
Title: windex: Analysing convergent evolution using the Wheatsheaf index
Version: 1.0
Date: 2014-09-05
Author: Kevin Arbuckle and Amanda Minter
Maintainer: Kevin Arbuckle
Description: Analysing convergent evolution using the Wheatsheaf index.
License: GPL-2
Depends: geiger (>= 2.0), ape, scatterplot3d, utils, R (>= 3.0.0)
Packaged: 2014-10-14 13:49:37 UTC; aminter
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-16 00:01:11

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New package ggRandomForests with initial version 1.0.0
Package: ggRandomForests
Type: Package
Title: Creating and Plotting Data Objects for Understanding Random Forests
Version: 1.0.0
Date: 2014-10-15
Author: John Ehrlinger
Maintainer: John Ehrlinger
License: GPL (>= 3)
URL: https://github.com/ehrlinger/ggRandomForests
Description: The ggRandomForests package contains tools for creating and plotting data structures to visually understand random forest models. The functions are designed for use with the randomForestSRC package. This package is structured to extract intermediate data objects from the random forest. S3 Plot functions, which use the ggplot2 package, are included for each data object.
Depends: R (>= 3.1.0), ggplot2, randomForestSRC, reshape2, survival, dplyr
Suggests: testthat
Packaged: 2014-10-15 18:13:42 UTC; ehrlinj
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-15 23:53:25

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New package cwhmisc with initial version 5.0
Package: cwhmisc
Version: 5.0
Date: 2014-10-15
Title: Miscellaneous Functions for math, plotting, printing, statistics, strings, and tools
Author: Christian W. Hoffmann
Maintainer: Christian W. Hoffmann
Depends: R (>= 2.0), lattice, grid
Description: Miscellaneous useful or interesting functions. Some parameters of functions may have changed, so beware!
License: GPL (>= 2)
Packaged: 2014-10-15 14:05:48 UTC; hoffmann
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-15 23:37:39

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New package bio3d with initial version 2.1-1
Package: bio3d
Title: Biological Structure Analysis
Version: 2.1-1
Author: Barry Grant, Xin-Qiu Yao, Lars Skjaerven, Julien Ide
VignetteBuilder: knitr
Imports: parallel, grid
Suggests: XML, RCurl, lattice, ncdf, igraph, bigmemory, knitr, testthat
Depends: R (>= 3.0.0)
LazyData: yes
Description: Utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. Please refer to the URLs below for more information.
Maintainer: Barry Grant
License: GPL (>= 2)
URL: http://thegrantlab.org/bio3d/, http://bitbucket.org/Grantlab/bio3d
Packaged: 2014-10-15 20:07:48 UTC; xinqyao
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-15 23:56:55

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New package gets with initial version 0.1
Package: gets
Type: Package
Title: General-to-Specific (GETS) Model Selection
Version: 0.1
Depends: R (>= 2.4.1), zoo, lgarch
Date: 2014-10-14
Author: Genaro Sucarrat
Maintainer: Genaro Sucarrat
Description: Automated multi-path General-to-Specific (GETS) model selection of either an AR-X model with log-ARCH-X errors, or a log-ARCH-X model of the log-variance. The three main functions of the package are arx, getsm and getsv. The first function estimates an AR-X model with log-ARCH-X errors. The second function undertakes GETS model selection of the mean specification of an arx object, whereas the third function undertakes GETS model selection of the log-variance specification of an arx object.
License: GPL-2
Packaged: 2014-10-15 09:28:20 UTC; admin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-15 13:16:36

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New package vetools with initial version 1.3-28
Encoding: UTF-8
Package: vetools
Depends: R (>= 2.10), sp
Imports: stringr, tis, lubridate, maptools, plyr, xts, scales
Maintainer: Andrew Sajo-Castelli
License: GPL
Title: Tools for Venezuelan Environmental Data
LazyData: false
Type: Package
Authors@R: c(person("Andrew", "Sajo-Castelli", email="asajo@usb.ve", role = c("aut", "cre")), person("Desiree", "Villalta", role = "ctb"),person("Lelys", "Bravo", role = "ctb"))
Description: Integrated data management library that offers a variety of tools concerning the loading and manipulation of environmental data available from different Venezuelan governmental sources. Facilities are provided to plot temporal and spatial data as well as understand the health of a collection of meteorological data.
Version: 1.3-28
Revision: $Rev: 4 $
BugReports: https://github.com/talassio/vetools/issues
Packaged: 2014-10-15 05:41:42 UTC; cesma
Author: Andrew Sajo-Castelli [aut, cre], Desiree Villalta [ctb], Lelys Bravo [ctb]
NeedsCompilation: no
Repository: CRAN
Date: 2013-08-01 14:10:01
Date/Publication: 2014-10-15 08:47:53

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New package nsgp with initial version 1.0.5
Package: nsgp
Title: Non-Stationary Gaussian Process Regression
Version: 1.0.5
Date: 2014-10-14
Author: Markus Heinonen
Maintainer: Markus Heinonen
Depends: R (>= 3.0.0)
Imports: MASS
Description: A Gaussian process regression using a Gaussian kernel for both one-sample and two-sample cases. Includes non-stationary Gaussian kernel (exponential decay function) and several likelihood ratio tests for differential testing along target points.
License: GPL-2
URL: http://amis-group.fr/software/nsgp
Packaged: 2014-10-14 14:29:42 UTC; markusheinonen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-15 06:54:09

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Tue, 14 Oct 2014

New package spark with initial version 1.0.0
Package: spark
Title: Sparklines in the R Terminal
Version: 1.0.0
Authors@R: "Gabor Csardi [aut, cre]"
Description: Sparklines in the terminal. Essentially an R implementation of the original shell project: http://zachholman.com/spark/
License: MIT + file LICENSE
LazyData: true
URL: https://github.com/gaborcsardi/spark
BugReports: https://github.com/gaborcsardi/pretty/spark
Imports: magrittr
Suggests: crayon, testthat
Packaged: 2014-10-14 13:44:34 UTC; gaborcsardi
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-15 02:45:14

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New package rex with initial version 0.1.0
Package: rex
Type: Package
Title: Simpler Regular Expressions
Version: 0.1.0
Date: 2013-01-16
Author: Kevin Ushey, Jim Hester
Maintainer: Jim Hester
Description: A simpler, human-readable interface for the construction of regular expressions.
Imports: magrittr, lazyeval
License: MIT + file LICENSE
Suggests: testthat, knitr, dplyr, ggplot2
VignetteBuilder: knitr
Collate: 'aaa.R' 'utils.R' 'escape.R' 'capture.R' 'character_class.R' 'counts.R' 'lookarounds.R' 'match.R' 'or.R' 'rex-mode.R' 'rex.R' 'shortcuts.R' 'wildcards.R' 'zzz.R'
Packaged: 2014-10-13 20:22:57 UTC; james.hester
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-14 05:27:22

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Mon, 13 Oct 2014

New package flam with initial version 1.0
Package: flam
Type: Package
Title: Fits Piecewise Constant Models with Data-Adaptive Knots
Version: 1.0
Date: 2014-10-13
Author: Ashley Petersen
Maintainer: Ashley Petersen
Imports: MASS
Description: Implements the fused lasso additive model as proposed in Petersen, A., Witten, D., and Simon, N. (2014). Fused Lasso Additive Model. arXiv preprint arXiv:1409.5391.
License: GPL (>= 2)
Packaged: 2014-10-13 17:51:08 UTC; ajpete
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-13 21:53:48

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New package dataRetrieval with initial version 1.4.0
Package: dataRetrieval
Type: Package
Title: Retrieval functions for hydrologic data
Version: 1.4.0
Date: 2014-10-13
Authors@R: c( person("Robert", "Hirsch", role = c("aut"), email = "rhirsch@usgs.gov"), person("Laura", "DeCicco", role = c("aut","cre"), email = "ldecicco@usgs.gov"))
Description: Collection of functions to help retrieve USGS data from either web services or user-provided data files.
License: Unlimited | file LICENSE
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at http://www.usgs.gov/visual-id/credit_usgs.html#copyright
Depends: R (>= 3.0)
Imports: zoo, XML, RCurl, reshape2, lubridate
Suggests: xtable, EGRET, knitr, testthat
LazyLoad: yes
LazyData: yes
VignetteBuilder: knitr
BuildVignettes: true
Additional_repositories: http://usgs-r.github.com
Packaged: 2014-10-13 15:59:48 UTC; ldecicco
Author: Robert Hirsch [aut], Laura DeCicco [aut, cre]
Maintainer: Laura DeCicco
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-13 21:59:18

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New package prettyunits with initial version 1.0.0
Package: prettyunits
Title: Pretty, Human Readable Formatting of Quantities
Version: 1.0.0
Authors@R: "Gabor Csardi [aut, cre]"
Description: Pretty, human readable formatting of quantities. Time intervals: 1337000 -> 15d 11h 23m 20s. Vague time intervals: 2674000 -> about a month ago. Bytes: 1337 -> 1.34 kB.
License: MIT + file LICENSE
LazyData: true
URL: https://github.com/gaborcsardi/prettyunits
BugReports: https://github.com/gaborcsardi/prettyunits/issues
Imports: magrittr, assertthat
Suggests: testthat
Packaged: 2014-10-13 13:22:50 UTC; gaborcsardi
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-13 17:32:18

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New package CP with initial version 1.5
Package: CP
Type: Package
Title: Conditional Power Calculations
Version: 1.5
Date: 2014-10-13
Author: Andreas Kuehnapfel
Maintainer: Andreas Kuehnapfel
Depends: R(>= 3.0.1)
Imports: survival
Description: Functions for calculating the conditional power for different models in survival time analysis within randomized clinical trials with two different treatments to be compared and survival as an endpoint.
License: GPL-3
URL: https://www.imise.uni-leipzig.de
LazyLoad: yes
LazyData: yes
Packaged: 2014-10-13 07:35:22 UTC; akuehnapfel
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-13 13:35:27

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New package QualInt with initial version 1.0.0
Package: QualInt
Title: Test for Qualitative Interactions
Version: 1.0.0
Author: Lixi Yu, Eun-Young Suh, Guohua (James) Pan
Maintainer: Lixi Yu
Description: Used for testing for qualitative interactions between treatment effects and patient subgroups. Here the term treatment effect means a comparison result of two treatments within each patient subgroup. Models included in this package are Gaussian, binomial and Cox models. Methods included here are interval based graphical approach and Gail Simon LRT.
Depends: survival, ggplot2
License: GPL-2
LazyLoad: yes
Packaged: 2014-10-13 06:18:25 UTC; Lixi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-13 09:58:21

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Sun, 12 Oct 2014

New package RNetLogo with initial version 1.0-1
Package: RNetLogo
Version: 1.0-1
Date: 2014-10-12
Title: Provides an Interface to the Agent-Based Modelling Platform NetLogo
Author: Jan C. Thiele
Maintainer: Jan C. Thiele
Description: Interface to use and access Wilensky's NetLogo (Wilensky 1999) from R using either headless (no GUI) or interactive GUI mode. Provides functions to load models, execute commands, and get values from reporters. Mostly analogous to the NetLogo Mathematica Link http://ccl.northwestern.edu/netlogo/docs/mathematica.html
Depends: R (>= 2.12.1), rJava (>= 0.6-3), igraph
Suggests: parallel
SystemRequirements: Java (>= 6.0), NetLogo (>= 5.0)
License: GPL-2
LazyLoad: yes
URL: http://rnetlogo.r-forge.r-project.org/
Packaged: 2014-10-12 13:24:12 UTC; jthiele
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-12 18:56:10

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Sat, 11 Oct 2014

New package BSGW with initial version 0.9
Package: BSGW
Type: Package
Title: Bayesian Survival Model using Generalized Weibull Regression
Version: 0.9
Date: 2014-10-11
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani
Description: Bayesian survival model using Weibull regression on both scale and shape parameters.
License: GPL (>= 2)
Depends: survival
Packaged: 2014-10-11 22:19:22 UTC; amahani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-12 02:02:48

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New package RAdwords with initial version 0.1
Package: RAdwords
Type: Package
Title: RAdwords: Loading Adwords data into R
Description: The aim of RAdwords is loading Adwords data into R. Therefore the package implements three main features. First, the package provides an authentication process for R with the Adwords API via OAUTH2. Second, the package offers an interface to apply the Adwords query language in R and query the Adwords API with ad-hoc reports. Third, the received data are transformed into suitable data formats for further data processing and data analysis.
Version: 0.1
Author: Johannes Burkhardt , Matthias Bannert
Maintainer: Johannes Burkhardt
Depends: R (>= 3.0.3)
Imports: RCurl, rjson
License: GPL (>= 2) | MIT + file LICENSE
URL: https://github.com/jburkhardt/RAdwords
Packaged: 2014-10-11 15:44:41 UTC; jburkhardt
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-11 18:33:25

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New package mfblock with initial version 1.0
Package: mfblock
Type: Package
Title: Fitting and Simulation of a block multifactor model
Version: 1.0
Date: 2014-09-11
Author: Marc Fortier
Maintainer: Marc Fortier
Imports: boot,nloptr
Description: Implementation of the simulated method of moments (smm) of Oh and Patton for copula-based multivariate models
License: GPL-3
Depends: skewt
NeedsCompilation: TRUE
Packaged: 2014-10-10 21:40:10 UTC; root
Repository: CRAN
Date/Publication: 2014-10-11 07:07:36

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Fri, 10 Oct 2014

New package BNSP with initial version 1.0.0
Package: BNSP
Title: Bayesian Non- and Semi-parametric Model Fitting
Version: 1.0.0
Date: 2014-10-10
Author: Georgios Papageorgiou
Maintainer: Georgios Papageorgiou
Description: Markov chain Monte Carlo algorithms for non- and semi-parametric models
Depends: R (>= 3.1.0)
License: GPL (>= 2)
URL: http://www.bbk.ac.uk/ems/faculty/papageorgiou
Packaged: 2014-10-10 14:30:48 UTC; papgeo
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-10 23:54:56

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New package HierO with initial version 0.1
Package: HierO
Type: Package
Title: A graphical user interface for calculating power and sample size for hierarchical data
Version: 0.1
Date: 2014-10-10
Author: Kari Tokola
Maintainer: Kari Tokola
Description: HierO is a graphical user interface (GUI) tool for calculating optimal statistical power and sample size for hierarchical data structure. HierO constructs a user defined sample size optimization problem to GAMS (General Algebraic Modeling System)form and uses Rneos package to send the problem to NEOS server for solving.
License: GPL-2
Depends: methods, rneos
Imports: XMLRPC, RCurl, bitops, XML, tcltk, tcltk2
Additional_repositories: http://www.omegahat.org/R
Packaged: 2014-10-10 12:38:01 UTC; kt61380
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-10 21:54:10

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New package adwave with initial version 1.0
Package: adwave
Type: Package
Title: Wavelet Analysis of Genomic Data from Admixed Populations
Version: 1.0
Date: 2014-10-03
Depends: R (>= 2.10), waveslim
Author: Jean Sanderson
Maintainer: Murray Cox
Description: Implements wavelet-based approaches for describing population admixture. Principal Components Analysis (PCA) is used to define the population structure and produce a localized admixture signal for each individual. Wavelet summaries of the PCA output describe variation present in the data and can be related to population-level demographic processes. For more details, see accompanying paper.
License: GPL (>= 2)
Packaged: 2014-10-10 09:36:22 UTC; jean
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-10 21:54:19

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New package RSQLServer with initial version 0.1.1
Package: RSQLServer
Type: Package
Title: SQL Server R Database Interface (DBI)
Version: 0.1.1
Date: 2014-10-10
Authors@R: as.person(c("Imanuel Costigan [aut,cre]", "The jTDS Project (for MSSQL Server driver) [aut]", "Simon Urbanek [ctb]", "The Legion Of The Bouncy Castle [cph,ctb]"))
Maintainer: Imanuel Costigan
Description: RSQLServer wraps the jTDS Project's JDBC 3.0 SQL Server driver and extends the RJDBC classes and DBI methods. It defines a SQLServerDriver, SQLServerConnection & SQLServerRsult S4 classes as extensions of the RJDBC equivalent classes. Most of the DBI methods will simply be calls to methods defined by RJDBC classes. However, the dbConnect and some of the dbGetInfo methods are specific to SQL Server. The jTDS drivers do extend to Sybase SQL Server, but currently, only Microsoft SQL Server is supported by this package.
License: GPL-2
Depends: methods, DBI (>= 0.3.1), rJava (>= 0.9-6)
Imports: RJDBC (>= 0.2-4)
SystemRequirements: Java (>= 1.3)
Collate: 'DBDriver.R' 'DBConnection.R' 'DBResult.R' 'RSQLServer.R' 'Utils.R' 'onLoad.R'
Packaged: 2014-10-10 08:55:42 UTC; imanuel
Author: Imanuel Costigan [aut, cre], The jTDS Project [aut] (for MSSQL Server driver), Simon Urbanek [ctb], The Legion Of The Bouncy Castle [cph, ctb]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-10 12:10:24

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New package sptm with initial version 14.10-8
Package: sptm
LazyLoad: yes
LazyData: yes
Version: 14.10-8
Date: 14.10-08
Title: SemiParametric Transformation Model Methods
Author: Youyi Fong , Krisztian Sebestyen
Maintainer: Youyi Fong
Depends: R (>= 3.0.0), survival, survey
Imports: kyotil
Suggests: RUnit, mvtnorm, Matrix, MASS
Description: Semiparametric transformation model, calibration weights
License: GPL (>= 2)
Packaged: 2014-10-09 22:23:29 UTC; yfong
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-10 07:27:16

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Thu, 09 Oct 2014

New package ENiRG with initial version 0.1
Package: ENiRG
Type: Package
Title: Ecological Niche in R and GRASS
Version: 0.1
Date: 2014-05-21
Author: Fernando Canovas, Chiara Magliozzi, Jose Antonio Palazon-Ferrando, Frederico Mestre, Mercedes Gonzalez-Wanguemert
Maintainer: Fernando Garcia Canovas
Description: The package allows to perform the Ecological Niche Factor Analysis, calculate habitat suitability maps and classify the habitat in suitability classes. Computations are executed in a throw-away GRASS environment from R in order to be able to perform analysis with large data sets.
License: GPL (>= 2)
Depends: ade4, raster, R.utils, sp, spgrass6
Imports: gdata, fgui, miniGUI, tcltk
Packaged: 2014-10-09 10:30:36 UTC; fcgarcia
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-09 14:33:32

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New package CEC with initial version 0.9.1
Package: CEC
Title: Cross-Entropy Clustering
Version: 0.9.1
Date: 2014-10-09
Author: Konrad Kamieniecki
Maintainer: Konrad Kamieniecki
Description: Cross-Entropy Clustering (CEC) divides the data into Gaussian type clusters. It performs the automatic reduction of unnecessary clusters, while at the same time allows the simultaneous use of various type Gaussian mixture models.
ByteCompile: true
Encoding: UTF-8
NeedsCompilation: yes
License: GPL-3
Packaged: 2014-10-08 20:18:08 UTC; konrad
Repository: CRAN
Date/Publication: 2014-10-09 14:30:45

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New package anominate with initial version 0.5
Package: anominate
Type: Package
Title: alpha-NOMINATE Ideal Point Estimator
Version: 0.5
Date: 2014-10-06
Author: Royce Carroll , Christopher Hare , Jeffrey B. Lewis , James Lo , Keith T. Poole , and Howard Rosenthal
Maintainer: Christopher Hare
Depends: coda, wnominate, oc, pscl, MCMCpack
Description: Fits ideal point model described in Carroll, Lewis, Lo, Poole and Rosenthal, "The Structure of Utility in Models of Spatial Voting," American Journal of Political Science 57(4): 1008--1028.
License: GPL-2
URL: http://www.voteview.com/alphanominate.asp
Packaged: 2014-10-09 01:51:51 UTC; Christopher
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-09 14:49:04

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Wed, 08 Oct 2014

New package HiDimMaxStable with initial version 0.1
Package: HiDimMaxStable
Version: 0.1
Date: 2014-10-07
Encoding: UTF-8
Title: Inference on High Dimensional Max-Stable Distributions
Authors@R: c(person("Alexis","Bienvenüe",role=c("aut","cre"), email="alexis.bienvenue@univ-lyon1.fr"), person("Christian","Robert",role="aut"))
Depends: R (>= 2.2.0), methods, copula
Imports: mnormt, partitions, maxLik, mnormpow, VGAM
Suggests: rgl, snowfall, MASS, SpatialExtremes
Description: Inference of high dimensional max-stable distributions, from the paper "Likelihood based inference for high-dimensional extreme value distributions", by A. Bienvenüe and C. Robert, arXiv:1403.0065 [stat.AP].
License: GPL (>= 2)
URL: http://arxiv.org/abs/1403.0065
Packaged: 2014-10-08 19:15:57 UTC; alexis
Author: Alexis Bienvenüe [aut, cre], Christian Robert [aut]
Maintainer: Alexis Bienvenüe
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-08 21:57:23

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New package bdscale with initial version 1.0
Package: bdscale
Version: 1.0
Date: 2014-10-08
Title: Remove weekends and holidays from ggplot2 axes
Author: Dave Mills
Maintainer: Dave Mills
Depends: R (>= 3.0)
Imports: ggplot2, scales
Suggests: magrittr, dplyr
URL: http://github.com/dvmlls/bdscale
Description: Provides a continuous date scale, omitting weekends and holidays
License: GPL-2
Packaged: 2014-10-08 20:14:28 UTC; David.Mills
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-08 22:27:33

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Tue, 07 Oct 2014

New package saps with initial version 1.0.0
Package: saps
Title: Significance Analysis of Prognostic Signatures
Description: Functions implementing the Significance Analysis of Prognostic Signatures method (SAPS). SAPS provides a robust method for identifying biologically significant gene sets associated with patient survival. Three basic statistics are computed. First, patients are clustered into two survival groups based on differential expression of a candidate gene set. P_pure is calculated as the probability of no survival difference between the two groups. Next, the same procedure is applied to randomly generated gene sets, and P_random is calculated as the proportion achieving a P_pure as significant as the candidate gene set. Finally, a pre-ranked Gene Set Enrichment Analysis (GSEA) is performed by ranking all genes by concordance index, and P_enrich is computed to indicate the degree to which the candidate gene set is enriched for genes with univariate prognostic significance. A SAPS_score is calculated to summarize the three statistics, and optionally a Q-value is computed to estimate the significance of the SAPS_score by calculating SAPS_scores for random gene sets.
Version: 1.0.0
biocViews: BiomedicalInformatics, GeneExpression, GeneSetEnrichment, DifferentialExpression, Survival
Authors@R: c( person("Daniel", "Schmolze", email = "saps@schmolze.com", role = c("aut", "cre")), person("Andrew", "Beck", email = "abeck2@bidmc.harvard.edu", role = "aut"), person("Benjamin", "Haibe-Kains", email = "benjamin.haibe.kains@utoronto.ca", role = "aut"))
Maintainer: Daniel Schmolze
Depends: R (>= 2.14.0), survival
Imports: piano, survcomp, reshape2
Suggests: snowfall, knitr
License: MIT + file LICENSE
LazyData: true
VignetteBuilder: knitr
Packaged: 2014-10-08 01:32:33 UTC; Daniel
Author: Daniel Schmolze [aut, cre], Andrew Beck [aut], Benjamin Haibe-Kains [aut]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-08 04:52:36

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New package PLordprob with initial version 1.0
Package: PLordprob
Type: Package
Title: Multivariate Ordered Probit Model via Pairwise Likelihood
Version: 1.0
Date: 2014-09-29
Author: Euloge Clovis Kenne Pagui [aut,cre], Antonio Canale [aut], Alan Genz [ctb], Adelchi Azzalini [ctb]
Maintainer: Euloge Clovis Kenne Pagui
Depends: mnormt
Description: Multivariate ordered probit model, i.e. the extension of the scalar ordered probit model where the observed variables have dimension greater than one. Estimation of the parameters is done via maximization of the pairwise likelihood, a special case of the composite likehood obtained as product of bivariate marginal distributions. The package uses the Fortran 77 subroutine SADMVN by Alan Genz, with minor adaptations made by Adelchi Azzalini in his "mvnormt" package for evaluating the two-dimensional Gaussian integrals involved in the pairwise log-likelihood. Optimization of the latter objective function is performed via quasi-Newton box-constrained optimization algorithm, as implemented in nlminb.
License: GPL-2
Packaged: 2014-10-07 14:29:04 UTC; kenne
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-07 18:28:10

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New package MareyMap with initial version 1.2
Package: MareyMap
Title: Estimation of meiotic recombination rates using marey maps.
Version: 1.2
Date: 07/10/2014
Depends: R (>= 2.10)
Imports: tcltk, tkrplot, tools
Suggests: methods
Author: Aurelie Siberchicot, Clement Rezvoy, Delphine Charif, Laurent Gueguen and Gabriel Marais
Maintainer: Aurelie Siberchicot
License: GPL (>= 2)
Description: A package to graphically estimate local recombination rates across a genome using marey maps.
URL: http://pbil.univ-lyon1.fr/software/mareymap
LazyData: no
Encoding: UTF-8
Packaged: 2014-10-07 09:23:27 UTC; aurelie
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-07 12:04:50

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New package ibelief with initial version 1.0
Package: ibelief
Type: Package
Title: An R Package for Implementing Belief Functions
Version: 1.0
Author: Kuang Zhou ; Arnaud Martin
Maintainer: Kuang Zhou
Description: This package contains several basic functions to implement belief functions.
LazyData: FALSE
Depends: R (>= 3.0.2)
License: GPL (>= 2)
Packaged: 2014-10-07 09:03:25 UTC; zhoukuang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-07 11:20:18

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New package vegan3d with initial version 0.65-0
Package: vegan3d
Title: Static and dynamic 3D plots for vegan package
Version: 0.65-0
Date: 2014-10-06
Authors@R: c(person("Jari", "Oksanen", role=c("aut","cre"), email="jari.oksanen@oulu.fi"), person("Roeland", "Kindt", role="aut"), person(given=c("Gavin", "L."), family="Simpson", role="aut", email="ucfagls@gmail.com"))
Depends: vegan (>= 2.0-10)
Imports: rgl, scatterplot3d
Description: Static and dynamic 3D plots to be used with ordination results and in diversity analysis, especially with the vegan package
License: GPL-2
BugReports: https://github.com/vegandevs/vegan3d/issues
URL: https://github.com/vegandevs/vegan3d
Packaged: 2014-10-07 07:44:05 UTC; jarioksa
Author: Jari Oksanen [aut, cre], Roeland Kindt [aut], Gavin L. Simpson [aut]
Maintainer: Jari Oksanen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-07 10:53:45

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New package TEEReg with initial version 1.0
Package: TEEReg
Type: Package
Title: Trimmed Elemental Estimation for Linear Models
Version: 1.0
Date: 2014-10-06
Author: Wei Jiang and Matthew S. Mayo
Maintainer: Wei Jiang
Description: For fitting multiple linear regressions, the ordinary least squares approach is sensitive to outliers and/or violations of model assumptions. The trimmed elemental estimators are more robust to such situations. This package contains functions for computing the trimmed elemental estimates, as well as for creating the bias-corrected and accelerated bootstrap confidence intervals in the context of trimmed elemental regressions.
License: GPL (>= 2)
Packaged: 2014-10-07 08:07:58 UTC; Will Jiang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-07 10:37:09

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New package qicharts with initial version 0.1.0
Package: qicharts
Version: 0.1.0
Date: 2014-10-05
Title: Quality improvement charts
Authors@R: person("Jacob", "Anhoej", email = "jacob@anhoej.net", role = c("aut", "cre"))
Description: Functions for making run charts and basic Shewhart control charts for measure and count data. The main function, qic, creates run and control charts and has a simple interface with a rich set of options to control data analysis and plotting, including options for automatic data aggregation by subgroups, easy analysis of before-and-after data, exclusion of one or more data points from analysis, and splitting charts into sequential time periods. Missing values and empty subgroups are handled gracefully.
Depends: R (>= 3.1.1)
Imports: lattice, latticeExtra
License: GPL-3
LazyData: true
Suggests: knitr
VignetteBuilder: knitr
Packaged: 2014-10-05 15:15:56 UTC; jacob
Author: Jacob Anhoej [aut, cre]
Maintainer: Jacob Anhoej
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-07 09:38:49

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New package PerFit with initial version 1.2
Package: PerFit
Type: Package
Title: Person Fit
Version: 1.2
Date: 2014-08-26
Author: Jorge N. Tendeiro
Maintainer: Jorge N. Tendeiro
Description: PerFit contains several person fit indices that allow assessing whether individual response patterns to tests or questionnaires are (im)plausible given the other respondents in the sample or a specified Item Response Theory model.
Depends: ltm, irtoys
License: GPL (>= 2)
Packaged: 2014-10-07 08:43:49 UTC; p250795
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-07 11:07:48

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New package msBP with initial version 1.0
Package: msBP
Type: Package
Title: Multiscale Bernstein Polynomials for Densities
Version: 1.0
Date: 2014-10-06
Author: Antonio Canale
Maintainer: Antonio Canale
Depends: DPpackage
Description: Performs Bayesian nonparametric multiscale density estimation and multiscale testing of group differences with multiscale Bernstein polynomials (msBP) mixtures as in Canale and Dunson (2014).
License: GPL-2
Packaged: 2014-10-07 08:22:01 UTC; antonio
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-07 10:53:43

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Mon, 06 Oct 2014

New package NB with initial version 0.9
Package: NB
Type: Package
Title: Maximum Likelihood method in estimating effective population size from genetic data
Version: 0.9
Date: 2014-10-03
Author: Tin-Yu Hui @ Imperial College London
Maintainer: Tin-Yu Hui
Description: Estimate the effective population size of a closed population using genetic data collected from two or more data points.
License: GPL (>= 2)
Packaged: 2014-10-06 14:29:51 UTC; tjh111
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-06 17:37:10

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New package snipEM with initial version 1.0
Package: snipEM
Type: Package
Title: Snipping methods for robust estimation and clustering
Version: 1.0
Date: 2014-10-02
Author: Alessio Farcomeni, Andy Leung
Maintainer: Alessio Farcomeni
Description: Snipping methods
License: GPL (>= 2)
Depends: R (>= 3.0.0), Rcpp (>= 0.10.0), mvtnorm, MASS, GSE
LinkingTo: Rcpp, RcppArmadillo
Packaged: 2014-10-06 11:44:43 UTC; Alessio
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-06 15:09:20

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New package mvprpb with initial version 1.0.4
Package: mvprpb
Type: Package
Title: Orthant Probability of the Multivariate Normal Distribution
Version: 1.0.4
Date: 2014-10-06
Author: Noboru Nomura
Maintainer: Noboru Nomura
Description: Computes orthant probabilities multivariate normal distribution.
License: BSD_3_clause + file LICENSE
Copyright: (C) 2014 National Institute of Advanced Industrial Science and Technology (AIST)
Packaged: 2014-10-05 23:59:51 UTC; Nomura
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-06 08:14:11

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Sun, 05 Oct 2014

New package mnormpow with initial version 0.1
Package: mnormpow
Version: 0.1
Date: 2014-07-10
Title: Multivariate Normal Distributions with Power Integrand
Authors@R: c(person("Alan","Genz",role="ctb"), person("Adelchi","Azzalini",role="ctb"), person("Alexis","Bienvenue",role=c("aut","cre"), email="alexis.bienvenue@univ-lyon1.fr"), person("Christian","Robert",role="aut"))
Depends: R (>= 2.2.0)
Description: Computes integral of f(x)*x_i^k on a product of intervals, where f is the density of a gaussian law. This a is small alteration of the mnormt code from A. Genz and A. Azzalini.
License: GPL (>= 2)
Packaged: 2014-10-05 22:29:31 UTC; alexis
Author: Alan Genz [ctb], Adelchi Azzalini [ctb], Alexis Bienvenue [aut, cre], Christian Robert [aut]
Maintainer: Alexis Bienvenue
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-06 00:41:58

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New package ropensecretsapi with initial version 1.0.0
Package: ropensecretsapi
Type: Package
Title: R Package for the OpenSecrets.org API
Version: 1.0.0
Date: 2014-04-10
Author: Thomas P. Fuller
Maintainer: Thomas P. Fuller
Description: An R package for the OpenSecrets.org web services API.
Depends: R (>= 3.0.3), RJSONIO, RCurl
SystemRequirements:
LazyLoad: yes
License: LGPL-3
Copyright: (C) 2014 Coherent Logic Limited; ALL RIGHTS RESERVED.
URL: http://www.r-project.org, http://coherentlogic.com/r-package-for-the-opensecrets-org-api&source=cran
Repository: CRAN
Archs: i386, x64
Packaged: 2014-10-05 04:31:00 UTC; thospfuller
NeedsCompilation: no
Date/Publication: 2014-10-05 08:48:31

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Sat, 04 Oct 2014

New package SightabilityModel with initial version 1.3
Package: SightabilityModel
Type: Package
Title: Wildlife Sightability Modeling
Version: 1.3
Date: 2014-10-03
Author: John Fieberg
Maintainer: John Fieberg
Description: Uses logistic regression to model the probability of detection as a function of covariates. This model is then used with observational survey data to estimate population size, while accounting for uncertain detection. See Steinhorst and Samuel (1989).
License: GPL-2
LazyLoad: yes
Packaged: 2014-10-04 18:05:18 UTC; jfieberg
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-04 21:59:03

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New package vec2dtransf with initial version 1.1
Package: vec2dtransf
Type: Package
Title: 2D Cartesian Coordinate Transformation
Version: 1.1
Date: 2012-04-09
Author: German Carrillo
Maintainer: German Carrillo
Description: A package for applying affine and similarity transformations on vector spatial data (sp objects). Transformations can be defined from control points or directly from parameters. If redundant control points are provided Least Squares is applied allowing to obtain residuals and RMSE.
License: GPL (>= 2)
Collate: Class-Cartesian2DCoordinateTransformation.R Cartesian2DCoordinateTransformation-methods.R Class-SimilarityTransformation.R Class-AffineTransformation.R SimilarityTransformation-methods.R AffineTransformation-methods.R
Depends: sp, methods
Packaged: 2014-10-04 13:33:09 UTC; germap
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-04 15:35:58

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New package DynNom with initial version 1.0
Package: DynNom
Type: Package
Title: A Dynamic Nomogram for Linear and Generalized Linear Models as Shiny Applications
Version: 1.0
Date: 2014-08-05
Author: Amirhossein Jalali, Alberto Alvarez-Iglesias, John Newell
Depends: ggplot2, stargazer, shiny, compare
Maintainer: Amirhossein Jalali
Description: The DynNom function makes it possible to present the results of an lm or glm model object as a dynamic nomogram that can be displayed in an R Studio panel or web browser.
License: GPL-2
Packaged: 2014-10-04 11:50:09 UTC; 13239018
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-04 18:07:26

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New package saccades with initial version 0.1
Package: saccades
Type: Package
Title: Detection of Fixations in Eye-Tracking Data
Version: 0.1
Date: 2014-09-30
Authors@R: c(person("Titus", "von der Malsburg", email="malsburg@posteo.de", role=c("aut", "cph", "cre")))
Description: Functions for detecting eye fixations in raw eye-tracking data. The detection is done using a velocity-based algorithm for saccade detection proposed by Ralf Engbert and Reinhold Kliegl in 2003. The algorithm labels segments as saccades when the velocity of the eye movement exceeds a certain threshold. Anything between two saccades is considered a fixation. Thus the algorithm is not appropriate for data containing episodes of smooth pursuit eye movements.
License: GPL-2
URL: https://github.com/tmalsburg/saccades
BugReports: https://github.com/tmalsburg/saccades/issues
Depends: R (>= 2.10), zoom
Packaged: 2014-10-04 01:05:13 UTC; malsburg
Author: Titus von der Malsburg [aut, cph, cre]
Maintainer: Titus von der Malsburg
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-04 06:35:47

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Fri, 03 Oct 2014

New package enpls with initial version 1.0
Package: enpls
Type: Package
Title: Ensemble Partial Least Squares (EnPLS) Regression
Version: 1.0
Date: 2014-10-04
Author: Nan Xiao , Dong-Sheng Cao , Qing-Song Xu
Maintainer: Nan Xiao
Description: R package for ensemble partial least squares regression, a unified framework for feature selection, outlier detection, and ensemble learning.
License: GPL (>= 2)
URL: https://github.com/road2stat/enpls
BugReports: https://github.com/road2stat/enpls/issues
LazyData: yes
VignetteBuilder: knitr
Imports: pls, foreach, doParallel
Suggests: knitr
Packaged: 2014-10-03 19:13:00 UTC; jimmy
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-03 22:10:51

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New package WRS2 with initial version 0.1-0
Package: WRS2
Type: Package
Title: Wilcox Robust Estimation and Testing.
Version: 0.1-0
Date: 2014-10-02
Authors@R: c(person(given="Patrick", family="Mair", email="mair@fas.harvard.edu", role=c("cre","aut")), person(given="Felix", family="Schoenbrodt", email="felix@nicebread.de", role=c("aut")), person(given=c("Rand"), family="Wilcox", email="rwilcox@usc.edu", role=c("aut")))
Description: A user-friendly version of Wilcox' robust statistics functions (WRS package on GitHub). It implements robust tests for ANOVA and ANCOVA as described in R. Wilcox (2012) 'Introduction to Robust Estimation and Hypothesis Testing'.
License: GPL-2
URL: https://github.com/nicebread/WRS
Imports: MASS
Depends: R (>= 3.0.0)
Encoding: latin1
LazyData: yes
LazyLoad: yes
ByteCompile: yes
Packaged: 2014-10-03 11:54:51 UTC; patrick
Author: Patrick Mair [cre, aut], Felix Schoenbrodt [aut], Rand Wilcox [aut]
Maintainer: Patrick Mair
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-03 14:23:49

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Thu, 02 Oct 2014

New package msda with initial version 1.0.1
Package: msda
Title: Multi-class Sparse Discriminant Analysis
Version: 1.0.1
Date: 2014-09-26
Author: Qing Mai , Yi Yang , Hui Zou
Maintainer: Yi Yang
Depends: Matrix, MASS
Description: Efficient procedures for computing a new multi-class sparse discriminant analysis method that estimates all discriminant directions simultaneously.
LazyData: yes
License: GPL-2
URL: https://github.com/emeryyi/msda
Packaged: 2014-10-02 21:29:17 UTC; emeryyi
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-03 01:00:26

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New package mfp with initial version 1.5.0
Package: mfp
Title: Multivariable Fractional Polynomials
Version: 1.5.0
Date: 2014-09-15
Author: original by Gareth Ambler , modified by Axel Benner
Maintainer: Stephan Luecke
Depends: survival
Description: Fractional polynomials are used to represent curvature in regression models. A key reference is Royston and Altman, 1994.
License: GPL (>= 2)
Packaged: 2014-10-02 11:57:32 UTC; stephan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-02 17:19:49

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New package stabs with initial version 0.1-0
Package: stabs
Title: Stability Selection with Error Control
Version: 0.1-0
Date: 2014-10-02
Authors@R: c(person("Benjamin", "Hofner", role = c("aut", "cre"), email = "benjamin.hofner@fau.de"), person("Torsten", "Hothorn", role = c("aut")))
Description: Resampling procedures to assess the stability of selected variables with additional finite sample error control for high-dimensional variable selection procedures such as Lasso or boosting
Depends: R (>= 2.14.0), methods, stats, parallel
Suggests: TH.data, hdi
Enhances: glmnet, lars, mboost (> 2.3-0)
LazyData: yes
License: GPL-2
URL: http://r-forge.r-project.org/projects/stabsel/
Packaged: 2014-10-02 13:26:51 UTC; bhofner
Author: Benjamin Hofner [aut, cre], Torsten Hothorn [aut]
Maintainer: Benjamin Hofner
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-02 15:43:49

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New package mycor with initial version 0.1
Package: mycor
Title: Automatic Correlation and Regression Test in a Data Frame
Version: 0.1
Authors@R: person("Keon-Woong","Moon", email="cardiomoon@gmail.com", role=c("aut","cre"))
Description: Perform correlation and linear regression test among the numeric columns in a data frame automatically and make plots using pairs or lattice::parallelplot.
Depends: R (>= 3.1.1)
License: CC0
LazyData: true
Imports: lattice
Suggests: knitr, testthat
VignetteBuilder: knitr
Packaged: 2014-10-01 23:07:17 UTC; cardiomoon
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-02 07:55:29

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Wed, 01 Oct 2014

New package TFDEA with initial version 0.9.5
Package: TFDEA
Version: 0.9.5
Title: TFDEA (Technology Forecasting using DEA)
Author: ETA Research Group at Portland State University
Maintainer: Tom Shott
Depends: R (>= 3.0.0), lpSolveAPI
License: GPL-2
Description: The package implements the TFDEA algorithm for technology forecasting. Using DEA it forecasts the capabilities of future technologies. The package also includes basic DEA (Data Envelopment Analysis) and SDEA (Super-efficiency Data Envelopment Analysis). In additional the package includes some standard technology forecasting data sets.
URL: http://www.pdx.edu/extreme-technology-analytics/open-tfdea-r-package
Packaged: 2014-09-28 17:14:36 UTC; tshott
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-01 18:51:41

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New package measuRing with initial version 0.1
Package: measuRing
Type: Package
Title: Detection and Control of Tree-Ring Widths on Scanned Image Sections of Dendrochronological Samples
Version: 0.1
Date: 2014-10-01
Author: Wilson Lara , Carlos Sierra
Maintainer: Wilson Lara
Description: This package assists in the identification of ring borders on scanned image sections from dendrochronological samples. It processes the image section and computes luminance data from images producing a matrix of gray values and a time series of smoothed gray values. Luminance data is plotted on segmented images for users to perform both: visual identification of ring borders, or control of automatic detection. The package provides functions to visually include/exclude ring borders on the R graphical device, or automatically detect ring borders using a linear detection algorithm. This algorithm detects ring borders according to negative extreme values in the smoothed time-series of gray values.
License: GPL-3
Depends: tiff, zoo, pastecs
LazyData: TRUE
Packaged: 2014-10-01 09:36:57 UTC; wilar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-01 17:32:39

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New package lazyeval with initial version 0.1.9
Package: lazyeval
Version: 0.1.9
Title: Lazy (Non-Standard) Evaluation
Description: A disciplined approach to non-standard evaluation.
Authors@R: as.person(c( "Hadley Wickham [aut,cre]", "RStudio [cph]" ))
License: GPL-3
LazyData: true
Depends: R (>= 3.1.0)
Suggests: knitr, rmarkdown (>= 0.2.65), microbenchmark
VignetteBuilder: knitr
Packaged: 2014-10-01 15:45:41 UTC; hadley
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-01 18:28:28

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New package checkpoint with initial version 0.3.2
Package: checkpoint
Title: Install Packages from Snapshots on the Checkpoint Server for Reproducibility
Description: The goal of checkpoint is to solve the problem of package reproducibility in R. Specifically, checkpoint allows you to install packages as they existed on CRAN on a specific snapshot date as if you had a CRAN time machine. To achieve reproducibility, the checkpoint() function installs the packages required or called by your project and scripts to a local library exactly as they existed at the specified point in time. Only those packages are available to your project, thereby avoiding any package updates that came later and may have altered your results. In this way, anyone using checkpoint's checkpoint() can ensure the reproducibility of your scripts or projects at any time. To create the snapshot archives, once a day (at midnight UTC) we refresh the Austria CRAN mirror, on the "Managed R Archived Network" server (http://mran.revolutionanalytics.com/). Immediately after completion of the rsync mirror process, we take a snapshot, thus creating the archive. Snapshot archives exist starting from 2014-09-17.
Version: 0.3.2
Date: 2014-10-01
Author: Revolution Analytics
Maintainer: Andrie de Vries
Copyright: Revolution Analytics
License: GPL-2
URL: https://github.com/RevolutionAnalytics/checkpoint
BugReports: http://www.github.com/RevolutionAnalytics/checkpoint/issues
Imports: knitr
Suggests: testthat(>= 0.9)
Packaged: 2014-10-01 16:25:38 UTC; Andrie de Vries
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-01 18:44:47

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New package steepness with initial version 0.2-2
Package: steepness
Version: 0.2-2
Date: 2014-29-09
Title: Testing Steepness of Dominance Hierarchies
Author: David Leiva & Han de Vries .
Maintainer: David Leiva
Depends: R (>= 3.1.0)
Description: steepness is a package that computes steepness as a property of dominance hierarchies. Steepness is defined as the absolute slope of the straight line fitted to the normalized David's scores. The normalized David's scores can be obtained on the basis of dyadic dominance indices corrected for chance or by means of proportions of wins. Given an observed sociomatrix, it computes hierarchy's steepness and estimates statistical significance by means of a randomization test.
License: GPL (>= 2)
Packaged: 2014-09-29 21:01:16 UTC; dleivaur
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-01 07:28:10

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New package SQDA with initial version 1.0
Package: SQDA
Type: Package
Title: Sparse Quadratic Discriminant Analysis
Version: 1.0
Date: 2014-09-19
Author: Jiehuan Sun
Maintainer: Jiehuan Sun
Depends: R (>= 2.10)
Imports: limma (>= 3.18.13), PDSCE (>= 1.2), mvtnorm (>= 0.9.99992)
Description: Sparse Quadratic Discriminant Analysis (SQDA) can be performed. In SQDA, the covariance matrix are assumed to be block-diagonal.And, for each block, sparsity assumption is imposed on the covariance matrix. It is useful in high-dimensional setting.
License: GPL-3
Packaged: 2014-09-30 18:53:29 UTC; jiehuansun
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-01 07:22:24

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New package repra with initial version 0.4.1
Package: repra
Title: Renewable Energy Probability Resource Assessment Tool (REPRA)
Version: 0.4.1
Date: 2014-09-30
Authors@R: as.person(c( "Eduardo Ibanez [aut, cre]", "National Renewable Energy Laboratory [cph]" ))
Description: This package includes methods to calculate resource adequacy metrics in power systems. These methods are based in the notion of loss-of-load probability (LOLP) and include the treatment of conventional and variable renewable generators.
License: MIT + file LICENSE
Depends: R(>= 3.1.0)
Imports: data.table, dplyr, Rcpp, reshape2, ggplot2, assertthat
Suggests: testthat, knitr
LinkingTo: Rcpp (>= 0.11.1)
VignetteBuilder: knitr
LazyData: TRUE
Packaged: 2014-09-30 16:21:53 UTC; eibanez
Author: Eduardo Ibanez [aut, cre], National Renewable Energy Laboratory [cph]
Maintainer: Eduardo Ibanez
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-01 07:06:42

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Tue, 30 Sep 2014

New package mdsdt with initial version 1.0
Package: mdsdt
Version: 1.0
Date: 2014-09-27
Title: Functions for Analysis of Data with General Recognition Theory
Author: Robert X.D. Hawkins , Joe Houpt , Noah Silbert , Leslie Blaha , Thomas D. Wickens
Maintainer: Robert X.D. Hawkins
Depends: R (>= 1.8.0), ellipse, mnormt, polycor
Description: This package contains a series of tools associated with General Recognition Theory (Townsend & Ashby, 1986), including Gaussian model fitting of 4x4 and more general confusion matrices, associated plotting and model comparison tools, and tests of marginal response invariance and report independence.
License: GPL (>= 2)
Collate: 'grt-data.R' 'grt_base.R'
Packaged: 2014-09-30 02:49:43 UTC; hawkrobe
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-30 07:50:30

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Mon, 29 Sep 2014

New package repra with initial version 0.4
Package: repra
Title: Renewable Energy Probability Resource Assessment Tool (REPRA)
Version: 0.4
Date: 2014-09-29
Author: Eduardo Ibanez
Maintainer: Eduardo Ibanez
Description: This package includes methods to calculate resource adequacy metrics in power systems. These methods are based in the notion of loss-of-load probability (LOLP) and include the treatment of conventional and variable renewable generators.
License: MIT + file LICENSE
Depends: R(>= 3.1.0)
Imports: data.table, dplyr, Rcpp, reshape2, ggplot2, assertthat
Suggests: testthat, knitr
LinkingTo: Rcpp (>= 0.11.1)
VignetteBuilder: knitr
LazyData: TRUE
Packaged: 2014-09-29 21:02:43 UTC; eibanez
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-30 00:03:48

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New package rjstat with initial version 0.2
Package: rjstat
Type: Package
Title: Read and write JSON-stat data sets
Version: 0.2
Date: 2014-08-16
Author: Aaron Schumacher , Håkon Malmedal
Maintainer: Aaron Schumacher
Description: Read and write the JSON-stat format (http://json-stat.org) to and from (lists of) R data frames. Not all features are supported, especially the extensive metadata features of JSON-stat.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/ajschumacher/rjstat
BugReports: https://github.com/ajschumacher/rjstat/issues
Imports: jsonlite (>= 0.9.8), assertthat
Suggests: testthat (>= 0.8), reshape (>= 0.7)
Packaged: 2014-09-29 13:40:28 UTC; hmalmedal
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 23:06:22

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New package gender with initial version 0.4.1
Package: gender
Type: Package
Title: Gender: predict gender from names using historical data
Version: 0.4.1
Authors@R: c(person("Lincoln", "Mullen", role = c("aut", "cre"), email = "lincoln@lincolnmullen.com"), person("Cameron", "Blevins", role = "ctb"), person("Ben", "Schmidt", role = "ctb"))
Description: Encodes gender based on names and dates of birth, using either the Social Security Administration's data set of first names by year of birth or Census Bureau data from 1789 to 1940, both from the United States of America. By using these data sets instead of lists of male and female names, this package is able to more accurately guess the gender of a name, and it is able to report the probability that a name was male or female.
URL: https://github.com/ropensci/gender
Depends: R (>= 3.0.0), utils, stats
Imports: devtools(>= 1.5), dplyr (>= 0.2), httr (>= 0.4), jsonlite (>= 0.9.10)
Suggests: ggplot2, knitr, magrittr, testthat
LazyData: yes
License: MIT + file LICENSE
VignetteBuilder: knitr
BugReports: https://github.com/ropensci/gender/issues
Packaged: 2014-09-29 15:17:37 UTC; lmullen
Author: Lincoln Mullen [aut, cre], Cameron Blevins [ctb], Ben Schmidt [ctb]
Maintainer: Lincoln Mullen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 23:04:09

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New package atmcmc with initial version 1.0
Package: atmcmc
Type: Package
Title: Automatically Tuned Markov Chain Monte Carlo
Version: 1.0
Date: 2014-09-16
Author: Jinyoung Yang
Maintainer: Jinyoung Yang
Description: Uses adaptive diagnostics to tune and run a random walk Metropolis MCMC algorithm, to converge to a specified target distribution and estimate means of functionals.
License: GPL (>= 2)
Packaged: 2014-09-29 20:01:29 UTC; 1
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 23:00:15

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New package sprint with initial version 1.0.7
Package: sprint
Title: Simple Parallel R INTerface
Version: 1.0.7
Date: 2014-09-24
Author: University of Edinburgh SPRINT Team
Copyright: University of Edinburgh
Maintainer: Eilidh Troup
Contact: University of Edinburgh SPRINT Team
Depends: R (>= 2.9.2), rlecuyer, ff (>= 2.1-1), randomForest
Suggests: cluster, stringdist, RUnit, Matrix, SparseM, multtest, Biostrings, ShortRead, golubEsets, RankProd
Imports: boot, e1071
SystemRequirements: MPI(>= 2.0)
Description: SPRINT (Simple Parallel R INTerface) is a parallel framework for R. It provides a High Performance Computing (HPC) harness which allows R scripts to run on HPC clusters. SPRINT contains a library of selected R functions that have been parallelized. Functions are named after the original R function with the added prefix 'p', i.e. the parallel version of cor() in SPRINT is called pcor(). Call to the parallel R functions are included directly in standard R scripts. SPRINT contains functions for correlation (pcor), partitioning around medoids (ppam), apply (papply), permutation testing (pmaxT), bootstrapping (pboot), random forest (prandomForest), rank product (pRP) and hamming distance (pstringdistmatrix).
License: GPL (>= 3)
URL: http://www.r-sprint.org
Repository: CRAN
Packaged: 2014-09-29 12:12:34 UTC; eilidhtroup
Date/Publication: 2014-09-29 18:03:00
NeedsCompilation: yes

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New package EffectStars with initial version 1.5
Package: EffectStars
Type: Package
Title: Visualization of Categorical Response Models
Version: 1.5
Date: 2014-09-29
Depends: VGAM
Author: Gunther Schauberger
Maintainer: Gunther Schauberger
Description: The package provides functions to visualize regression models with categorical response. The effects of the covariates are plotted with star plots in order to allow for an optical impression of the fitted model.
License: GPL-2
LazyLoad: yes
Packaged: 2014-09-29 13:30:38 UTC; schaubergerg
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 18:02:57

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New package rFDSN with initial version 0.0.0
Package: rFDSN
Type: Package
Title: Get Seismic Data from the International Federation of Digital Seismograph Networks
Description: This package facilitates searching for and downloading seismic time series in miniSEED format (a minimalist version of the Standard for the Exchange of Earthquake Data) from International Federation of Digital Seismograph Networks repositories. This package can also be used to gather information about seismic networks (stations, channels, locations, etc) and find historical earthquake data (origins, magnitudes, etc).
Version: 0.0.0
Date: 2014-09-28
Authors@R: c(person(given="Daniel C.",family="Bowman", role=c("aut", "cre"), email="daniel.bowman@unc.edu"))
Depends: R (>= 3.1.1), XML (>= 3.98.1.1)
Enhances: RSEIS (>= 3.3.3)
License: GPL (>= 3)
Packaged: 2014-09-29 12:44:12 UTC; bowman
Maintainer: Daniel C. Bowman
Author: Daniel C. Bowman [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 15:10:04

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New package activity with initial version 1.0
Package: activity
Title: Animal Activity Statistics
Version: 1.0
Date: 24/09/14
Author: Marcus Rowcliffe
Maintainer: Marcus Rowcliffe
Description: Provides functions to fit kernel density functions to animal activity time data; plot activity distributions; quantify overall levels of activity; statistically compare activity metrics through bootstrapping; and evaluate variation in linear variables with time (or other circular variables).
License: GPL-3
Depends: methods
Imports: circular, overlap, pbapply,
LazyData: true
Packaged: 2014-09-29 11:45:26 UTC; Rowcliffe.M
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 15:07:49

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New package robustDA with initial version 1.0
Package: robustDA
Type: Package
Title: Robust Mixture Discriminant Analysis
Version: 1.0
Date: 2014-09-26
Author: Charles Bouveyron & Stephane Girard
Maintainer: Charles Bouveyron
Depends: MASS, mclust, Rsolnp
Description: Robust mixture discriminant analysis (RMDA, Bouveyron & Girard, 2009) allows to build a robust supervised classifier from learning data with label noise. The idea of the proposed method is to confront an unsupervised modeling of the data with the supervised information carried by the labels of the learning data in order to detect inconsistencies. The method is able afterward to build a robust classifier taking into account the detected inconsistencies into the labels.
License: GPL-2
Packaged: 2014-09-28 17:32:50 UTC; charles
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 07:27:55

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New package blocksdesign with initial version 1.0
Package: blocksdesign
Type: Package
Title: Nested block designs for unstructured treatments
Version: 1.0
Date: 2014-09-16
Author: R. N. Edmondson
Maintainer: Rodney Edmondson
Description: Nested block designs for unstructured treatment sets where blocks can be repeatedly nested and treatments can have different levels of replication. Blocks strata are optimized hierarchically with each set of nested blocks optimized within the levels of the preceding set. Block sizes are equal if the number of blocks exactly divides the number of plots, otherwise they differ by at most one plot. The design output is a data table giving a randomised allocation of treatments to blocks together with a plan table showing treatments in blocks and a set of blocks-by-treatments incidence matrices, one for each blocks stratum.
License: GPL (>= 2)
URL: http://www.expdesigns.co.uk
Suggests: knitr
VignetteBuilder: knitr
Imports: crossdes
Packaged: 2014-09-28 18:51:17 UTC; rne
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 07:23:52

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Sun, 28 Sep 2014

New package neural with initial version 1.4.2.2
Package: neural
Version: 1.4.2.2
Title: Neural Networks
Author: Adam Nagy
Maintainer: Billy Aung Myint
Description: RBF and MLP neural networks with graphical user interface
License: GPL (>= 2)
Repository: CRAN
Packaged: 2014-09-28 13:32:07 UTC; billy
NeedsCompilation: no
Date/Publication: 2014-09-28 18:26:46

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New package ecoretriever with initial version 0.1
Package: ecoretriever
Title: R Interface to the EcoData Retriever
Description: Provides an R interface to the EcoData Retriever (http://ecodataretriever.org/) via the EcoData Retriever's command line interface. The EcoData Retriever automates the tasks of finding, downloading, and cleaning ecological datasets, and then stores them in a local database.
Version: 0.1
Date: 2014-09-07
Authors@R: c(person("Daniel", "McGlinn", role = c("aut", "cre"), email = "danmcglinn@gmail.com"), person("Ethan", "White", role = "aut", email = "ethan@weecology.org"))
BugReports: https://github.com/ropensci/ecoretriever/issues
URL: https://github.com/ropensci/ecoretriever/
Depends: R (>= 3.0.0)
SystemRequirements: EcoData Retriever (>= 1.6)
License: MIT + file LICENSE
LazyData: true
Packaged: 2014-09-28 14:46:23 UTC; danmcglinn
Author: Daniel McGlinn [aut, cre], Ethan White [aut]
Maintainer: Daniel McGlinn
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-28 18:18:03

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Sat, 27 Sep 2014

New package MetFns with initial version 1.0
Package: MetFns
Type: Package
Title: Analysis of Visual Meteor Data
Version: 1.0
Date: 2014-09-16
Author: Kristina Veljkovic
Maintainer: Kristina Veljkovic
Description: Functions for selection of visual meteor data, calculations of Zenithal Hourly Rate (ZHR) and population index, graphics of ZHR and magnitude distribution
License: GPL-2 | GPL-3
Depends: astroFns, plotrix, graphics, R (>= 2.10)
Packaged: 2014-09-27 12:44:17 UTC; Kiki Moreau
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-27 16:04:27

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Fri, 26 Sep 2014

New package oc with initial version 0.95
Package: oc
Version: 0.95
Date: 2014-09-25
Title: OC Roll Call Analysis Software.
Author: Keith Poole , Jeffrey Lewis , James Lo and Royce Carroll
Maintainer: James Lo
Depends: R (>= 2.3.1), pscl (>= 0.59)
Description: Estimates Optimal Classification scores from roll call votes supplied though a 'rollcall' object from package 'pscl'.
License: GPL-2
Repository: CRAN
Date/Publication: 2014-09-26 19:05:36
Packaged: 2014-09-25 23:15:49 UTC; jameslo
NeedsCompilation: yes

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New package Guerry with initial version 1.6-1
Package: Guerry
Type: Package
Title: Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
Version: 1.6-1
Date: 2014-09-26
Authors@R: c(person(given = "Michael", family = "Friendly", role=c("aut", "cre"), email="friendly@yorku.ca"), person(given = "Stephane", family = "Dray", role="aut"))
Author: Michael Friendly [aut, cre], Stephane Dray [aut]
Maintainer: Michael Friendly
Encoding: latin1
Depends: R (>= 2.10)
Suggests: sp, shapefiles, spdep, ade4, maptools
Description: This package comprises maps of France in 1830, multivariate data from A.-M. Guerry and others, and statistical and graphic methods related to Guerry's "Moral Statistics of France". The goal is to facilitate the exploration and development of statistical and graphic methods for multivariate data in a geo-spatial context of historical interest.
License: GPL
URL: http://guerry.r-forge.r-project.org/
LazyLoad: yes
LazyData: yes
Repository: CRAN
Repository/R-Forge/Project: guerry
Repository/R-Forge/Revision: 25
Repository/R-Forge/DateTimeStamp: 2014-09-26 12:11:25
Date/Publication: 2014-09-26 19:03:40
Packaged: 2014-09-26 12:50:09 UTC; rforge
NeedsCompilation: no

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New package GenWin with initial version 0.1
Package: GenWin
Title: Spline Based Window Boundaries for Genomic Analyses
Version: 0.1
Date: 9/25/2014
Author: Timothy M. Beissinger
Maintainer: Timothy M. Beissinger
Description: Defines window or bin boundaries for the analysis of genomic data. Boundaries are based on the inflection points of a cubic smoothing spline fitted to the raw data. Along with defining boundaries, a technique to evaluate results obtained from unequally-sized windows is provided. Applications are particularly pertinent for, though not limited to, genome scans for selection based on variability between populations (e.g. using Wright's fixations index, Fst, which measures variability in subpopulations relative to the total population).
Depends: R (>= 3.1.1)
Imports: pspline
License: MIT + file LICENSE
LazyData: true
Packaged: 2014-09-26 13:33:03 UTC; beissinger
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-26 16:51:09

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New package ADDT with initial version 1.0
Package: ADDT
Type: Package
Title: A Package for Analysis of Accelerated Destructive Degradation Test Data
Version: 1.0
Date: 2014-09-23
Author: Yili Hong, Yimeng Xie, and Caleb King
Maintainer: Yili Hong
Description: Accelerated destructive degradation tests (ADDT) are often used to collect necessary data for assessing the long-term properties of polymeric materials. Based on the collected data, a thermal index (TI) is estimated. The TI can be useful for material rating and comparison. This package performs the least squares (LS) and maximum likelihood (ML) procedures for estimating TI for polymeric materials. The LS approach is a two-step approach that is currently used in industrial standards, while the ML procedure is widely used in the statistical literature. The ML approach allows one to do statistical inference such as quantifying uncertainties in estimation, hypothesis testing, and predictions. Two publicly available datasets are provided to allow users to experiment and practice with the functions.
License: GPL-2
Packaged: 2014-09-25 23:57:12 UTC; Yili Hong
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-26 07:55:35

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