Sun, 25 Jan 2015

New package reproducer with initial version 0.1.2
Package: reproducer
Title: Reproduce Statistical Analyses and Meta-Analyses
Version: 0.1.2
Date: 2015-01-25
Authors@R: c( person("Lech", "Madeyski", email = "lech.madeyski@gmail.com", role = c("cre", "aut")), person("Marian", "Jureczko", email = "marian.jureczko@gmail.com", role = "ctb", comment = "Data contributor"))
Maintainer: Lech Madeyski
Description: The reproducer R package includes data analysis functions and data sets (e.g., related to software defect prediction) to streamline reproducible research in software engineering.
Depends: R (>= 3.1.1)
License: CC BY 4.0
LazyData: true
URL: http://madeyski.e-informatyka.pl/reproducible-research/
Imports: openxlsx (>= 2.2.1), ggplot2 (>= 1.0.0), gridExtra(>= 0.9.1)
NeedsCompilation: no
Packaged: 2015-01-25 16:16:28 UTC; lma
Author: Lech Madeyski [cre, aut], Marian Jureczko [ctb] (Data contributor)
Repository: CRAN
Date/Publication: 2015-01-25 21:30:59

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Sat, 24 Jan 2015

New package knncat with initial version 1.2.1
Package: knncat
Version: 1.2.1
Date: 2015-01-22
Title: Nearest-neighbor Classification with Categorical Variables
Author: Sam Buttrey
Maintainer: Sam Buttrey
Description: Scale categorical variables in such a way as to make NN classification as accurate as possible. The code also handles continuous variables and prior probabilities, and does intelligent variable selection and estimation of both error rates and the right number of NN's.
License: GPL-2
Packaged: 2015-01-23 20:17:52 UTC; sebuttre
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-24 06:41:56

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Fri, 23 Jan 2015

New package LDAvis with initial version 0.2
Package: LDAvis
Title: Interactive Visualization of Topic Models
Version: 0.2
Authors@R: c(person("Carson", "Sievert", role = c("aut", "cre"), email = "cpsievert1@gmail.com"), person("Kenny", "Shirley", role = "aut", email = "kshirley@research.att.com"))
Description: Tools to create an interactive web-based visualization of a topic model that has been fit to a corpus of text data using Latent Dirichlet Allocation (LDA). Given the estimated parameters of the topic model, it computes various summary statistics as input to an interactive visualization built with D3.js that is accessed via a browser. The goal is to help users interpret the topics in their LDA topic model.
Depends: R (>= 2.10)
Imports: proxy, RJSONIO, parallel
License: MIT + file LICENSE
Suggests: mallet, lda, topicmodels, gistr (>= 0.0.8.99), servr, shiny, knitr, rmarkdown
LazyData: true
VignetteBuilder: knitr
URL: https://github.com/cpsievert/LDAvis
BugReports: https://github.com/cpsievert/LDAvis/issues
Packaged: 2015-01-23 16:58:48 UTC; cpsievert
Author: Carson Sievert [aut, cre], Kenny Shirley [aut]
Maintainer: Carson Sievert
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-23 21:07:17

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New package SpatPCA with initial version 1.0
Package: SpatPCA
Type: Package
Title: Regularized Principal Component Analysis for Spatial Data
Version: 1.0
Date: 2015-01-11
Author: Wen-Ting Wang and Hsin-Cheng Huang
Maintainer: Wen-Ting Wang
Description: This package provides regularized principal component analysis incorporating smoothness, sparseness and orthogonality of eigenfunctions by using alternating direction method of multipliers (ADMM) algorithm.
License: GPL-2
Depends: fields
Imports: Rcpp (>= 0.11.2)
Suggests: foreach
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2015-01-23 02:59:16 UTC; Joseph
Repository: CRAN
Date/Publication: 2015-01-23 09:06:28

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New package remMap with initial version 0.2-0
Package: remMap
Version: 0.2-0
Date: 2008-12-3
Title: Regularized Multivariate Regression for Identifying Master Predictors
Author: Jie Peng , Pei Wang , Ji Zhu .
Maintainer: Pei Wang
Description: remMap is developed for fitting multivariate response regression models under the high-dimension-low-sample-size setting
License: GPL (>= 2)
Packaged: 2015-01-22 19:04:20 UTC; xwan2
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-23 09:17:05

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Thu, 22 Jan 2015

New package shinybootstrap2 with initial version 0.2
Package: shinybootstrap2
Title: Bootstrap 2 web components for use with Shiny
Version: 0.2
Authors@R: c( person("Winston", "Chang", role = c("aut", "cre"), email = "winston@rstudio.com"), person(family = "RStudio", role = "cph"), person("Mark", "Otto", role = "ctb", comment = "Bootstrap library"), person("Jacob", "Thornton", role = "ctb", comment = "Bootstrap library"), person(family = "Bootstrap contributors", role = "ctb", comment = "Bootstrap library; authors listed at https://github.com/twbs/bootstrap/graphs/contributors"), person(family = "Twitter, Inc", role = "cph", comment = "Bootstrap library"), person("Brian", "Reavis", role = c("ctb", "cph"), comment = "selectize.js library"), person("Egor", "Khmelev", role = c("ctb", "cph"), comment = "jslider library"), person(family = "SpryMedia Limited", role = c("ctb", "cph"), comment = "DataTables library") )
Description: Provides Bootstrap 2 web components for use with the Shiny package. With versions of Shiny prior to 0.11, these Bootstrap 2 components were included as part of the package. Later versions of Shiny include Bootstrap 3, so the Bootstrap 2 components have been moved into this package for those uses who rely on features specific to Bootstrap 2.
Depends: R (>= 3.0.0)
License: GPL-3 | file LICENSE
LazyData: true
Imports: htmltools (>= 0.2.6), jsonlite (>= 0.9.12), shiny
Packaged: 2015-01-22 17:07:03 UTC; winston
Author: Winston Chang [aut, cre], RStudio [cph], Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library; authors listed at https://github.com/twbs/bootstrap/graphs/contributors), Twitter, Inc [cph] (Bootstrap library), Brian Reavis [ctb, cph] (selectize.js library), Egor Khmelev [ctb, cph] (jslider library), SpryMedia Limited [ctb, cph] (DataTables library)
Maintainer: Winston Chang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-22 19:16:49

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New package lba with initial version 1.0
Package: lba
Title: Latent Budget Analysis for Compositional Data
Version: 1.0
Date: 2015-01-22
Author: Enio G. Jelihovschi Ivan Bezerra Allaman
Maintainer: Enio G. Jelihovschi
Depends: R (>= 3.1.2), MASS, alabama, plotrix, ca
Description: Latent budget analysis is a method for the analysis of a two-way contingency table with an exploratory variable and a response variable. It is specially designed for compositional data.
Encoding: latin1
License: GPL (>= 2)
Packaged: 2015-01-22 12:13:45 UTC; ivan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-22 18:42:44

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New package ESEA with initial version 1.0
Package: ESEA
Version: 1.0
Title: ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis
Author: Junwei Han, Xinrui Shi, Chunquan Li
Maintainer: Xinrui Shi
Description: The package can identify the dysregulated canonical pathways by investigating the changes of biological relationships of pathways in the context of gene expression data. (1) The ESEA package constructs a background set of edges by extracting pathway structure (e.g. interaction, regulation, modification, and binding etc.) from the seven public databases (KEGG; Reactome; Biocarta; NCI; SPIKE; HumanCyc; Panther) and the edge sets of pathways for each of the above databases. (2) The ESEA package can can quantify the change of correlation between genes for each edge based on gene expression data with cases and controls. (3) The ESEA package uses the weighted Kolmogorov-Smirnov statistic to calculate an edge enrichment score (EES), which reflects the degree to which a given pathway is associated the specific phenotype. (4) The ESEA package can provide the visualization of the results.
Depends: R (>= 2.10),igraph,XML,parmigene
Suggests: Matrix,graph
Collate: calEdgeCorScore.R ESEA.Main.R PlotGlobEdgeCorProfile.R PlotPathwayGraph.R PlotRunEnrichment.R SavePathway2File.R getEnvironmentData.R GetExampleData.R GetEdgesBackgrandData.R GetPathwayEdgeData.R
LazyData: Yes
License: GPL (>= 2)
biocViews: Statistics, Pathways, edge, enrichment analysis
Packaged: 2015-01-22 12:50:32 UTC; Administrator
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-22 15:58:44

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New package RcmdrPlugin.NMBU with initial version 1.8.0
Package: RcmdrPlugin.NMBU
Type: Package
Title: R Commander Plug-In for University Level Applied Statistics
Version: 1.8.0
Date: 2015-01-22
Author: Kristian Hovde Liland, Solve Sæbø
Maintainer: Kristian Hovde Liland
Encoding: latin1
Depends: R (>= 3.0.0), mixlm (>= 1.0.8), MASS, pls, xtable
Imports: Rcmdr (>= 2.0-0), tcltk
Suggests: lme4, leaps, mvtnorm, gmodels, abind, lattice, pbkrtest, vcd, multcomp, e1071, nnet
Description: An R Commander "plug-in" extending functionality of linear models and providing an interface to Partial Least Squares Regression and Linear and Quadratic Discriminant analysis. Several statistical summaries are extended, predictions are offered for additional types of analyses, and extra plots, tests and mixed models are available.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
RcmdrModels: mvr, lda, qda, prcomp, mer, rsm, glmerMod, lmerMod
NeedsCompilation: no
Packaged: 2015-01-22 08:26:37 UTC; kristian.liland
Repository: CRAN
Date/Publication: 2015-01-22 13:35:54

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Wed, 21 Jan 2015

New package TRD with initial version 1.0
Package: TRD
Type: Package
Title: Transmission Ratio Distortion
Version: 1.0
Date: 2015-01-21
Author: Lam Opal Huang
Maintainer: Lam Opal Huang
Depends: Rlab (>= 2.14.0)
Description: Transmission Ratio Distortion (TRD) is a genetic phenomenon where two alleles from either parent are not transmitted to the offspring at the Mendelian 1:1 ratio. Occurrence of TRD in general population can lead to false inflation or attenuation of association signals in case populations. Therefore, it is necessary to adjust for TRD in model fitting of case populations. This package uses models such as loglinear model (Weinberg 1998), augmented loglinear model (Huang 2014), and tests such as TDT (Spielman 1993), augmented TDT (Labbe 2013), on simulated or real datasets. This package has a simulation function which generates a population that is under the influence of TRD, and samples a sub-population, which can serve as the dataset to fit a loglinear model or to perform a TDT. Real dataset with the same data structure as described in the help file of the function 'll' can also be used in the loglinear model and the TDT functions. No real dataset is included in this package.
License: GPL (>= 2)
Packaged: 2015-01-21 18:53:44 UTC; Opal - AL
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-22 00:48:35

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New package rebus with initial version 0.0-4
Package: rebus
Type: Package
Title: Build Regular Expressions in a Human Readable Way
Version: 0.0-4
Date: 2015-01-20
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton
Authors@R: person("Richard", "Cotton", role = c("aut", "cre"), email = "richierocks@gmail.com")
Description: Build regular expressions piece by piece using human readable code.
Depends: R (>= 3.1.0)
Suggests: testthat
License: Unlimited
LazyLoad: yes
LazyData: yes
Acknowledgments: Development of this package was partially funded by the Proteomics Core at Weill Cornell Medical College in Qatar . The Core is supported by 'Biomedical Research Program' funds, a program funded by Qatar Foundation.
Collate: 'alternation.R' 'regex-methods.R' 'backreferences.R' 'capture.R' 'internal.R' 'grouping-and-repetition.R' 'constants.R' 'class-groups.R' 'concatenation.R' 'compound-constants.R' 'escape_special.R' 'datetime.R' 'lookaround.R' 'misc.R' 'number_range.R' 'regex-package.R' 'unicode-groups.R' 'unicode.R' 'zzz.R'
Packaged: 2015-01-20 13:49:39 UTC; rjc2003
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-22 00:46:57

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New package compLasso with initial version 0.0-1
Package: compLasso
Type: Package
Title: Implements the Component Lasso Method Functions
Version: 0.0-1
Date: 2014-10-04
Imports: quadprog, Matrix
Author: Nadine Hussami, Robert Tibshirani and Jerome Friedman
Maintainer: Nadine Hussami
Description: Implements the Component lasso method for linear regression using the sample covariance matrix connected-components structure, described in A Component Lasso, by Hussami and Tibshirani (2013)
License: GPL (>= 2)
Packaged: 2015-01-21 17:47:49 UTC; nadine
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-21 21:28:36

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New package npIntFactRep with initial version 1.0
Package: npIntFactRep
Type: Package
Title: Nonparametric Rank Test for Interaction in Factorial Designs with Repeated Measures
Version: 1.0
Date: 2015-01-15
Author: Jos Feys
Maintainer: Jos Feys
Description: Noparametric interaction tests on data set in 'wide' format with repeated measures. Choice between 1) Aligend Regular ranks, 2) Friedman ranks , and Koch ranks
License: GPL (>= 2)
Packaged: 2015-01-21 13:10:38 UTC; Jos
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-21 17:14:54

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New package mixlm with initial version 1.0.8
Package: mixlm
Type: Package
Title: Mixed Model ANOVA and Statistics for Education
Version: 1.0.8
Date: 2015-01-21
Authors@R: c(person("Kristian Hovde", "Liland", role = c("aut","cre"), email="kristian.liland@nmbu.no"), person("Solve", "Sæbø", role=c("ctb")), person(family="R-Core", role="ctb"))
Maintainer: Kristian Hovde Liland
Encoding: latin1
Description: The main functions perform mixed models analysis by least squares or REML by adding the function r() to formulas of lm and glm. A collection of text-book statistics for higher education is also included, e.g. modifications of the functions lm, glm and associated summaries from the package stats.
Depends: multcomp, pls, pracma
Imports: leaps, lme4, car
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
NeedsCompilation: no
Packaged: 2015-01-21 07:50:17 UTC; kristian.liland
Author: Kristian Hovde Liland [aut, cre], Solve Sæbø [ctb], R-Core [ctb]
X-CRAN-Comment: Earlier versions were removed on 2015-01-20 for copyright violation.
Repository: CRAN
Date/Publication: 2015-01-21 12:57:12

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New package gammSlice with initial version 1.3
Package: gammSlice
Type: Package
Title: Generalized additive mixed model analysis via slice sampling
Version: 1.3
Date: 2015-01-21
Author: Tung Pham and Matt Wand
Maintainer: Tung Pham
Description: Uses a slice sampling-based Markov chain Monte Carlo to conduct Bayesian fitting and inference for generalized additive mixed models (GAMM). Generalized linear mixed models and generalized additive models are also handled as special cases of GAMM.
Depends: R(>= 2.13), KernSmooth, lattice, mgcv
License: GPL (>= 2)
Packaged: 2015-01-21 06:46:35 UTC; tungp
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-21 08:24:52

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New package conformal with initial version 0.1
Package: conformal
Type: Package
Title: Conformal Prediction for Regression and Classification
Version: 0.1
Date: 04/10/2014
Author: Isidro Cortes
Maintainer: Isidro Cortes
Depends: R (>= 2.12.0), caret, ggplot2, grid, randomForest, e1071, methods
Suggests: kernlab
Description: Implementation of conformal prediction using caret models for classification and regression
License: GPL
LazyLoad: yes
Packaged: 2015-01-20 23:49:25 UTC; icortes
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-21 07:19:33

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New package ArfimaMLM with initial version 1.3
Package: ArfimaMLM
Type: Package
Title: Arfima-MLM Estimation For Repeated Cross-Sectional Data
Version: 1.3
Date: 2015-01-20
Authors@R: c(person("Patrick", "Kraft", role = c("aut", "cre"), email = "patrick.kraft@stonybrook.edu"), person("Christopher", "Weber", role = "ctb"))
Description: Functions to facilitate the estimation of Arfima-MLM models for repeated cross-sectional data and pooled cross-sectional time-series data (see Lebo and Weber 2015). The estimation procedure uses double filtering with Arfima methods to account for autocorrelation in repeated cross-sectional data followed by multilevel modeling (MLM) to estimate aggregate as well as individual-level parameters simultaneously.
Depends: R (>= 3.0.0), lme4, fractal
Imports: fracdiff
License: GPL (>= 2)
URL: https://github.com/pwkraft/ArfimaMLM
Packaged: 2015-01-20 23:53:31 UTC; patrick
Author: Patrick Kraft [aut, cre], Christopher Weber [ctb]
Maintainer: Patrick Kraft
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-21 07:09:03

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Tue, 20 Jan 2015

New package shinythemes with initial version 1.0
Package: shinythemes
Title: Themes for Shiny
Version: 1.0
Authors@R: c( person("Winston", "Chang", role = c("aut", "cre"), email = "winston@rstudio.com"), person(family = "RStudio", role = "cph"), person("Thomas", "Park", role = c("ctb", "cph"), comment = "Bootswatch themes"), person("Lukasz", "Dziedzic", role = c("ctb", "cph"), comment = "Lato font"), person("Nathan", "Willis", role = c("ctb", "cph"), comment = "News Cycle font"), person(family = "Google Corporation", role = c("ctb", "cph"), comment = "Open Sans font"), person("Matt", "McInerney", role = c("ctb", "cph"), comment = "Raleway font"), person(family = "Adobe Systems Incorporated", role = c("ctb", "cph"), comment = "Source Sans Pro font"), person(family = "Canonical Ltd", role = c("ctb", "cph"), comment = "Ubuntu font") )
Description: Themes for use with Shiny. Includes several Bootstrap themes from http://bootswatch.com/, which are packaged for use with Shiny applications.
Depends: R (>= 3.0.0)
Imports: shiny (>= 0.11)
License: GPL-3 | file LICENSE
Packaged: 2015-01-19 04:35:35 UTC; winston
Author: Winston Chang [aut, cre], RStudio [cph], Thomas Park [ctb, cph] (Bootswatch themes), Lukasz Dziedzic [ctb, cph] (Lato font), Nathan Willis [ctb, cph] (News Cycle font), Google Corporation [ctb, cph] (Open Sans font), Matt McInerney [ctb, cph] (Raleway font), Adobe Systems Incorporated [ctb, cph] (Source Sans Pro font), Canonical Ltd [ctb, cph] (Ubuntu font)
Maintainer: Winston Chang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-20 14:37:41

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New package RDS with initial version 0.7
Package: RDS
Type: Package
Title: Respondent-Driven Sampling
Version: 0.7
Date: 2014-11-11
Authors@R: c( person("Mark S.", "Handcock", role=c("aut","cre"), email="handcock@stat.ucla.edu"), person("Krista J.", "Gile", role=c("aut"), email="gile@math.umass.edu"), person("Ian E.", "Fellows", role=c("aut"), email="ian@fellstat.com"), person("W. Whipple", "Neely", role=c("aut"), email="wwneely@stat.washington.edu"))
Maintainer: Mark S. Handcock
Description: This package provides functionality for carrying out estimation with data collected using Respondent-Driven Sampling. This includes Heckathorn's RDS-I and RDS-II estimators as well as Gile's Sequential Sampling estimator.
License: LGPL-2.1
URL: http://www.hpmrg.org
Depends: methods
Suggests: isotone, network, survey, testthat
Imports: gridExtra, ggplot2, Hmisc, igraph, locfit, reshape2, scales
NeedsCompilation: yes
Packaged: 2015-01-19 23:59:13 UTC; handcock
Author: Mark S. Handcock [aut, cre], Krista J. Gile [aut], Ian E. Fellows [aut], W. Whipple Neely [aut]
Repository: CRAN
Date/Publication: 2015-01-20 06:14:09

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Mon, 19 Jan 2015

New package nLTT with initial version 1.0
Package: nLTT
Type: Package
Title: Calculate The NLTT Statistic
Version: 1.0
Date: 2014-09-17
Author: Thijs Janzen
Maintainer: Thijs Janzen
Description: Provides functions to calculate the normalised Lineage-Through-Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the absolute difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.
License: GPL-2
Imports: ape,coda,deSolve
Suggests: TESS
Packaged: 2015-01-19 14:04:52 UTC; janzen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-19 19:02:14

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New package gsw with initial version 1.0-3
Package: gsw
Version: 1.0-3
Date: 2015-01-11
Title: Gibbs Sea Water Functions
Authors@R: c(person("Dan", "Kelley", role=c("aut","cre","cph"), email="dan.kelley@dal.ca", comment="C wrapper plus R code, tests, and documentation"), person("Clark", "Richards", role=c("aut","cph"), email="clark.richards@gmail.com", comment="C wrapper plus R code, tests, and documentation"), person("WG127", "SCOR/IAPSO", role=c("aut","cph"), comment="Original Matlab and derived code"))
Copyright: Original algorithms and Matlab/C library (c) 2014 WG127 SCOR/IAPSO (Scientific Committee on Oceanic Research / International Association for the Physical Sciences of the Oceans, Working Group 127); C wrapper code and R code (c) 2015 Dan Kelley and Clark Richards
Maintainer: Dan Kelley
Depends: R (>= 2.15)
BugReports: https://github.com/TEOS-10/GSW-R/issues
Description: Provides an interface to the Gibbs SeaWater (TEOS-10) C library, which derives from Matlab and other code written by WG127 (Working Group 127) of SCOR/IAPSO (Scientific Committee on Oceanic Research / International Association for the Physical Sciences of the Oceans).
URL: http://teos-10.github.io/GSW-R/index.html
License: GPL (>= 2) | file LICENSE
LazyData: no
Packaged: 2015-01-19 15:17:55.139 UTC; kelley
Imports: utils
Author: Dan Kelley [aut, cre, cph] (C wrapper plus R code, tests, and documentation), Clark Richards [aut, cph] (C wrapper plus R code, tests, and documentation), WG127 SCOR/IAPSO [aut, cph] (Original Matlab and derived code)
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-19 18:43:55

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New package pathological with initial version 0.0-3
Package: pathological
Type: Package
Title: Path Manipulation Utilities
Version: 0.0-3
Date: 2014-12-23
Author: Richard Cotton [aut, cre], Janko Thyson [ctb]
Maintainer: Richard Cotton
Authors@R: c(person("Richard", "Cotton", role = c("aut", "cre"), email = "richierocks@gmail.com"), person("Janko", "Thyson", role = "ctb"))
Description: Utilities for paths, files and directories.
Depends: R (>= 2.15.0)
Imports: assertive, plyr, stringr
Suggests: testthat
License: Unlimited
LazyLoad: yes
Acknowledgments: Development of this package was partially funded by the Proteomics Core at Weill Cornell Medical College in Qatar . The Core is supported by 'Biomedical Research Program' funds, a program funded by Qatar Foundation.
Packaged: 2014-12-23 12:43:11 UTC; rjc2003
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-19 10:25:52

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Sun, 18 Jan 2015

New package hddtools with initial version 0.2.4
Package: hddtools
Type: Package
Version: 0.2.4
Date: 2014-11-21
Title: Hydrological Data Discovery Tools
Description: Facilitates discovery and handling of hydrological data, non-programmatic access to catalogues and databases.
Authors@R: c(person("Claudia", "Vitolo", role = c("aut", "cre"), email = "cvitolodev@gmail.com"), person("Simon", "Moulds", role = "aut", email = "simonmdev@riseup.net"))
Author: Claudia Vitolo [aut, cre], Simon Moulds [aut]
Maintainer: Claudia Vitolo
URL: http://cvitolo.github.io/r_hddtools/
BugReports: https://github.com/cvitolo/r_hddtools/issues
Depends: R (>= 3.0.2)
Imports: sp, rgdal, raster, RCurl, XML, zoo
License: GPL-3
LazyData: true
Repository: CRAN
Keywords: hydrology, hydrological modelling, hydrologic modeling, time series, environmental data, web technologies and services
Packaged: 2015-01-17 18:23:35 UTC; claudia
NeedsCompilation: no
Date/Publication: 2015-01-18 06:44:12

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Sat, 17 Jan 2015

New package onls with initial version 0.1-0
Package: onls
Type: Package
LazyLoad: no
LazyData: yes
Title: Orthogonal Nonlinear Least-Squares Regression
Version: 0.1-0
Date: 2015-01-17
Author: Andrej-Nikolai Spiess
Maintainer: Andrej-Nikolai Spiess
Description: Orthogonal Nonlinear Least-Squares Regression using Levenberg-Marquardt minimization.
License: GPL (>= 2)
Depends: R (>= 2.13.0), minpack.lm
NeedsCompilation: no
Packaged: 2015-01-17 18:53:48 UTC; aspiess
Repository: CRAN
Date/Publication: 2015-01-17 21:10:48

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New package ALTopt with initial version 0.1.0
Package: ALTopt
Title: Optimal Experimental Designs for Accelerated Life Testing
Version: 0.1.0
Authors@R: c(person("Kangwon", "Seo", role = c("aut", "cre"), email = "kseo7@asu.edu"), person("Rong", "Pan", role = "aut", email = "rong.pan@asu.edu"))
Description: This package creates the optimal (D, U and I) designs for the accelerated life testing with right censoring or interval censoring. It uses generalized linear model (GLM) approach to derive the asymptotic variance-covariance matrix of regression coefficients. The failure time distribution is assumed to follow Weibull distribution with a known shape parameter and log-linear link functions are used to model the relationship between failure time parameters and stress variables. Any number of stress factors can be used but no more than 3 are recommended due to the computational time. ALTopt package also provides several plotting functions including contour plot, Fraction of Use Space (FUS) plot and Variance Dispersion graphs of Use Space (VDUS) plot.
Depends: R (>= 3.0.0)
License: GPL-3
LazyData: true
Imports: cubature (>= 1.0), lattice (>= 0.20)
Packaged: 2015-01-17 00:15:29 UTC; kseo7
Author: Kangwon Seo [aut, cre], Rong Pan [aut]
Maintainer: Kangwon Seo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-17 07:22:11

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Fri, 16 Jan 2015

New package caretEnsemble with initial version 1.0.0
Package: caretEnsemble
Type: Package
Title: Ensembles of Caret Models
Version: 1.0.0
Date: 2015-01-14
Authors@R: c(person(c("Zachary", "A."), "Mayer", role = c("aut", "cre"), email = "zach.mayer@gmail.com"), person(c("Jared", "E."), "Knowles", role=c("aut"), email="jknowles@gmail.com"))
URL: https://github.com/zachmayer/caretEnsemble
BugReports: https://github.com/zachmayer/caretEnsemble/issues
Description: Functions for creating ensembles of caret models: caretList, caretEnsemble, and caretStack. caretList is a convenience function for fitting multiple caret::train models to the same dataset. caretEnsemble will make a linear combination of these models using greedy forward selection, and caretStack will make linear or non-linear combinations of these models, using a caret::train model as a meta-model.
Depends: R (>= 3.1.0), caret
Suggests: testthat, randomForest, rpart, kernlab, nnet, e1071, ipred, pROC, knitr, mlbench, MASS, gbm, klaR
Imports: caTools, pbapply, ggplot2, digest, plyr, grid, lattice, gridExtra
License: MIT + file LICENSE
VignetteBuilder: knitr
Packaged: 2015-01-14 20:16:22 UTC; zach
Author: Zachary A. Mayer [aut, cre], Jared E. Knowles [aut]
Maintainer: Zachary A. Mayer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-16 22:19:29

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New package anfis with initial version 0.99.1
Package: anfis
Type: Package
Title: Adaptive Neuro Fuzzy Inference System in R
Version: 0.99.1
Date: 2015-01-16
Author: Cristobal Fresno, Andrea S. Llera and Elmer A. Fernandez
Maintainer: Cristobal Fresno
Description: The package implements ANFIS Type 3 Takagi and Sugeno's fuzzy if-then rule network with the following features: (1) Independent number of membership functions(MF) for each input, and also different MF extensible types. (2) Type 3 Takagi and Sugeno's fuzzy if-then rule (3) Full Rule combinations, e.g. 2 inputs 2 membership funtions -> 4 fuzzy rules (4) Hibrid learning, i.e. Descent Gradient for precedents and Least Squares Estimation for consequents (5) Multiple outputs.
URL: http://www.bdmg.com.ar
License: GPL (>= 2)
Depends: R (>= 3.0), methods, parallel
Collate: 'MembershipFunction.R' 'MembershipFunction-show.R' 'BellMF.R' 'GaussianMF.R' 'NormalizedGaussianMF.R' 'MembershipFunction-evaluateMF.R' 'Anfis.R' 'Anfis-initialize.R' 'Anfis-getters.R' 'Anfis-printshow.R' 'Anfis-metrics.R' 'Anfis-package.R' 'Anfis-plotMF.R' 'Anfis-plot.R' 'Anfis-predict.R' 'Anfis-training.R' 'Anfis-trainSet.R' 'Anfis3-example.R' 'MembershipFunction-derivateMF.R' 'MembershipFunction-getset.R' 'MembershipFunction-print.R'
NeedsCompilation: no
Packaged: 2015-01-16 14:45:54 UTC; cristobal
Repository: CRAN
Date/Publication: 2015-01-16 16:22:46

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New package jagsUI with initial version 1.3.1
Package: jagsUI
Version: 1.3.1
Date: 2015-1-15
Title: A Wrapper Around rjags to Streamline JAGS Analyses
Author: Ken Kellner
Maintainer: Ken Kellner
Depends: R (>= 2.14.0), lattice
Imports: rjags (>= 3-3), coda (>= 0.13), parallel, methods
SystemRequirements: JAGS (http://mcmc-jags.sourceforge.net)
Description: This package provides a set of wrappers around rjags functions to run Bayesian analyses in JAGS (specifically, via libjags). A single function call can control adaptive, burn-in, and sampling MCMC phases, with MCMC chains run in sequence or in parallel. Posterior distributions are automatically summarized (with the ability to exclude some monitored nodes if desired) and functions are available to generate figures based on the posteriors (e.g., predictive check plots, traceplots). Function inputs, argument syntax, and output format are nearly identical to the R2WinBUGS/R2OpenBUGS packages to allow easy switching between MCMC samplers.
License: GPL-2
URL: https://github.com/kenkellner/jagsUI
NeedsCompilation: no
Packaged: 2015-01-15 21:47:50 UTC; kkellner
Repository: CRAN
Date/Publication: 2015-01-16 06:42:38

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Thu, 15 Jan 2015

New package lfl with initial version 1.0
Package: lfl
Type: Package
Title: Linguistic Fuzzy Logic
Version: 1.0
Date: 2015-01-14
Author: Michal Burda
Maintainer: Michal Burda
Description: Various algorithms related to linguistic fuzzy logic: mining for linguistic fuzzy association rules, performing perception-based logical deduction (PbLD), and forecasting time-series using fuzzy rule-based ensemble (FRBE).
License: GPL (>= 3.0)
Suggests: testthat
Depends: R (>= 3.1.1)
Imports: Rcpp (>= 0.11.0), foreach, forecast (>= 5.5), plyr, tseries, e1071, zoo, utils
LinkingTo: Rcpp
NeedsCompilation: yes
SystemRequirements: C++11
Packaged: 2015-01-15 13:27:44 UTC; michal
Repository: CRAN
Date/Publication: 2015-01-15 17:04:00

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New package MultiMeta with initial version 0.1
Package: MultiMeta
Type: Package
Title: Meta-analysis of Multivariate Genome Wide Association Studies
Version: 0.1
Date: 2014-08-21
Author: Dragana Vuckovic
Maintainer: Dragana Vuckovic
Description: Allows running a meta-analysis of multivariate Genome Wide Association Studies (GWAS) and easily visualizing results through custom plotting functions. The multivariate setting implies that results for each single nucleotide polymorphism (SNP) include several effect sizes (also known as "beta coefficients", one for each trait), as well as related variance values, but also covariance between the betas. The main goal of the package is to provide combined beta coefficients across different cohorts, together with the combined variance/covariance matrix. The method is inverse-variance based, thus each beta is weighted by the inverse of its variance-covariance matrix, before taking the average across all betas. The default options of the main function \code{multi_meta} will work with files obtained from GEMMA multivariate option for GWAS (Zhou & Stephens, 2014). It will work with any other output, as soon as columns are formatted to have the according names. The package also provides several plotting functions for QQ-plots, Manhattan Plots and custom summary plots.
License: GPL (>= 2)
Imports: mvtnorm,expm,ggplot2,reshape2
Depends: gtable,grid
Collate: 'betas_plot.R' 'mhplot.R' 'multi_meta.R' 'qqplotter.R' 'Example_file_1.R' 'Example_file_2.R' 'Example_output_file.R'
Packaged: 2015-01-15 08:57:26 UTC; genetica
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-15 11:44:10

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Wed, 14 Jan 2015

New package mztwinreg with initial version 1.0-1
Package: mztwinreg
Title: Regression Models for Monozygotic Twin Data
Description: Linear and logistic regression models for quantitative genetic analysis of data from monozygotic twins.
Version: 1.0-1
Date: 2015-01-13
Author: Aldo Cordova-Palomera
Maintainer: Aldo Cordova-Palomera
Imports: rms, mclogit
Suggests: lme4
License: GPL-3
URL: https://github.com/AldoCP/mztwinreg
Packaged: 2015-01-14 18:20:24 UTC; Juan StepSon
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-14 19:50:57

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New package speaq with initial version 1.2.0
Package: speaq
Type: Package
Title: Tools for Nuclear Magnetic Resonance (NMR) spectrum alignment and quantitative analysis.
Version: 1.2.0
Date: 2015-10-01
Author: Trung Nghia Vu, Kris Laukens and Dirk Valkenborg
Maintainer: Trung Nghia Vu
Description: We introduce a novel suite of informatics tools for the quantitative analysis of NMR metabolomic profile data. The core of the processing cascade is a novel peak alignment algorithm, called hierarchical Cluster-based Peak Alignment (CluPA). The algorithm aligns a target spectrum to the reference spectrum in a top-down fashion by building a hierarchical cluster tree from peak lists of reference and target spectra and then dividing the spectra into smaller segments based on the most distant clusters of the tree. To reduce the computational time to estimate the spectral misalignment, the method makes use of Fast Fourier Transformation (FFT) cross-correlation. Since the method returns a high-quality alignment, we can propose a simple methodology to study the variability of the NMR spectra. For each aligned NMR data point the ratio of the between-group and within-group sum of squares (BW-ratio) is calculated to quantify the difference in variability between and within predefined groups of NMR spectra. This differential analysis is related to the calculation of the F-statistic or a one-way ANOVA, but without distributional assumptions. Statistical inference based on the BW-ratio is achieved by bootstrapping the null distribution from the experimental data. Related publication is available at http://www.biomedcentral.com/1471-2105/12/405/.
Depends: R (>= 3.0.0), MassSpecWavelet
Imports: graphics,stats
License: Apache License 2.0
URL: https://github.com/nghiavtr/speaq
Packaged: 2015-01-14 12:12:43 UTC; trungvu
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-14 19:33:33

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New package betas with initial version 0.1.0
Package: betas
Title: Standardized Beta Coefficients
Version: 0.1.0
Authors@R: person("Andrea", "Cantieni", email = "andrea.cantieni@phsz.ch", role = c("aut", "cre"))
Description: Computes standardized beta coefficients and corresponding standard errors for the following models: - linear regression models with numerical covariates only - linear regression models with numerical and factorial covariates - weighted linear regression models - robust linear regression models with numerical covariates only
Depends: R (>= 3.1.1)
Imports: robust
License: GPL-3
LazyData: true
URL: https://github.com/andreaphsz/betas
BugReports: https://github.com/andreaphsz/betas/issues
Packaged: 2015-01-14 12:25:08 UTC; phsz
Author: Andrea Cantieni [aut, cre]
Maintainer: Andrea Cantieni
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-14 14:09:25

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New package EFDR with initial version 0.1.0
Package: EFDR
Type: Package
Title: Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images
Version: 0.1.0
Date: 2014-10-22
Authors@R: c(person("Andrew", "Zammit-Mangion", role = c("aut", "cre"), email = "andrewzm@gmail.com"), person("Hsin-Cheng", "Huang", role = "aut"))
Suggests: knitr, ggplot2, RCurl, fields, gridExtra, animation
Description: Enhanced False Discovery Rate (EFDR) is a tool to detect anomalies in an image. The image is first transformed into the wavelet domain in order to decorrelate any noise components, following which the coefficients at each resolution are standardised. Statistical tests (in a multiple hypothesis testing setting) are then carried out to find the anomalies. The power of EFDR exceeds that of standard FDR, which would carry out tests on every wavelet coefficient: EFDR choose which wavelets to test based on a criterion described in Shen et al. (2002). The package also provides elementary tools to interpolate spatially irregular data onto a grid of the required size. The work is based on Shen, X., Huang, H.-C., and Cressie, N. 'Nonparametric hypothesis testing for a spatial signal.' Journal of the American Statistical Association 97.460 (2002): 1122-1140.
Imports: Matrix, foreach (>= 1.4.2), doParallel (>= 1.0.8), waveslim (>= 1.7.5), parallel, gstat (>= 1.0-19), tidyr (>= 0.1.0.9000), dplyr (>= 0.3.0.2), sp (>= 1.0-15)
URL: http://github.com/andrewzm/EFDR
Depends: R (>= 3.0)
VignetteBuilder: knitr
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-01-14 05:30:49 UTC; andrew
Author: Andrew Zammit-Mangion [aut, cre], Hsin-Cheng Huang [aut]
Maintainer: Andrew Zammit-Mangion
Repository: CRAN
Date/Publication: 2015-01-14 07:19:56

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Tue, 13 Jan 2015

New package WCE with initial version 1.0
Package: WCE
Type: Package
Title: Weighted Cumulative Exposure Models
Version: 1.0
Date: 2015-01-12
Author: Marie-Pierre Sylvestre , Marie-Eve Beauchamp , Ryan Patrick Kyle , Michal Abrahamowicz
Maintainer: Marie-Pierre Sylvestre
Depends: R (>= 2.10)
Imports: plyr, survival, splines
Suggests: R.rsp
VignetteBuilder: R.rsp
Description: WCE implements a flexible method for modeling cumulative effects of time-varying exposures, weighted according to their relative proximity in time, and represented by time-dependent covariates. The current implementation estimates the weight function in the Cox proportional hazards model. The function that assigns weights to doses taken in the past is estimated using cubic regression splines.
License: GPL (>= 2)
LazyData: true
NeedsCompilation: no
Packaged: 2015-01-13 23:52:35 UTC; kyle
Repository: CRAN
Date/Publication: 2015-01-14 01:59:06

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New package htmltab with initial version 0.5.0
Package: htmltab
Title: Assemble Data Frames from HTML Tables
Version: 0.5.0
Authors@R: person("Christian", "Rubba", email = "christian.rubba@gmail.com", role = c("aut", "cre"))
Description: htmltab is a package for extracting structured information from HTML tables. It is similar to readHTMLTable() of the XML package but provides two major advantages. First, the package automatically expands row and column spans in the header and body cells. Second, users are given more control over the identification of header and body rows which will end up in the R table. Additionally, the function preprocesses table code, removes unneeded parts and so helps to alleviate the need for tedious post-processing.
Depends: R (>= 3.1.0)
Imports: XML (>= 3.98.1.1)
License: MIT + file LICENSE
LazyData: true
Suggests: testthat, knitr, magrittr (>= 1.5), tidyr
URL: http://github.com/crubba/htmltab
BugReports: https://github.com/crubba/htmltab/issues
VignetteBuilder: knitr
Packaged: 2015-01-13 23:17:15 UTC; christian
Author: Christian Rubba [aut, cre]
Maintainer: Christian Rubba
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-14 01:51:29

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New package bayesDccGarch with initial version 1.0
Package: bayesDccGarch
Type: Package
Title: The Bayesian Dynamic Conditional Correlation GARCH Model
Version: 1.0
Date: 2014-11-30
Author: Jose A Fioruci , Ricardo S Ehlers , Francisco Louzada
Maintainer: Jose A Fioruci
Depends: R (>= 2.14), coda
Description: Bayesian estimation of DCC-GARCH(1,1) Model
License: GPL (>= 2.14)
URL: http://arxiv.org/abs/1412.2967
Packaged: 2015-01-13 19:07:11 UTC; JAF
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-14 01:55:33

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New package BNPTSclust with initial version 1.0
Package: BNPTSclust
Type: Package
Title: A Bayesian Nonparametric Algorithm for Time Series Clustering
Version: 1.0
Date: 2015-01-12
Author: Martell-Juarez, D.A. & Nieto-Barajas, L.E.
Maintainer: David Alejandro Martell Juarez
Depends: R(>= 3.1.2), mvtnorm, MASS
Description: Performs the algorithm for time series clustering described in Nieto-Barajas and Contreras-Cristan (2014).
NeedsCompilation: no
Repository: CRAN
License: GPL (>= 2)
Packaged: 2015-01-13 01:48:36 UTC; David M
Date/Publication: 2015-01-13 19:40:14

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New package fsia with initial version 1.0
Package: fsia
Type: Package
Title: Import and Analysis of OMR Data from FormScanner
Version: 1.0
Date: 2015-01-13
Author: Michela Battauz
Maintainer: Michela Battauz
Description: Import data of tests and questionnaires from FormScanner. FormScanner is an open source software that converts scanned images to data using optical mark recognition (OMR) and it can be downloaded from http://sourceforge.net/projects/formscanner/. The spreadsheet file created by FormScanner is imported in a convenient format to perform the analyses provided by the package. These analyses include the conversion of multiple responses to binary (correct/incorrect) data, the computation of the number of corrected responses for each subject or item, the computation and the graphical representation of the frequencies of the responses to each item and the report of the responses of one or a few persons.
License: GPL (>= 2)
Packaged: 2015-01-13 14:20:17 UTC; Michela
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-13 16:42:28

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New package bigrquery with initial version 0.1.0
Package: bigrquery
Title: An Interface to Google's BigQuery API
Description: Easily talk to Google's BigQuery database from R.
Version: 0.1.0
Authors@R: c( person("Hadley", "Wickham", , "hadley@rstudio.com", c("aut", "cre")), person("RStudio", role = "cph") )
Depends: R (>= 3.1.0)
Imports: httr, jsonlite, assertthat, R6 (>= 2.0.0), dplyr (>= 0.3.0)
Suggests: testthat
License: GPL-3
LazyData: true
Packaged: 2015-01-13 14:16:38 UTC; hadley
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-13 16:41:14

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New package mixor with initial version 1.0.2
Package: mixor
Type: Package
Title: Mixed-Effects Ordinal Regression Analysis
Version: 1.0.2
Date: 2015-01-05
Author: Donald Hedeker , Kellie J. Archer, Rachel Nordgren, Robert D. Gibbons
Maintainer: Kellie J. Archer
Description: Provides the function 'mixord' for fitting a mixed-effects ordinal and binary response models and associated methods for printing, summarizing, extracting estimated coefficients and variance-covariance matrix, and estimating contrasts for the fitted models.
License: GPL (>= 2)
Depends: R (>= 2.10)
Suggests: survival
BuildResaveData: best
Biarch: yes
NeedsCompilation: yes
LazyLoad: true
Packaged: 2015-01-05 17:11:19 UTC; kjarcher
Repository: CRAN
Date/Publication: 2015-01-13 12:04:55

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New package FACTscorer with initial version 0.1.0
Package: FACTscorer
Title: Scores the FACT and FACIT Family of Patient-Reported Outcome Measures
Version: 0.1.0
Authors@R: c( person("Ray", "Baser", email="ray.stats@gmail.com", role=c("aut", "cre")), person("Ayelet", "Greenberg", email="greenberg613@gmail.com", role="ctb"))
Description: Provides functions to score the Functional Assessment of Cancer Therapy (FACT) and Functional Assessment of Chronic Illness Therapy (FACIT) family of patient-reported outcome (PRO) measures. The questionnaires themselves can be downloaded from www.FACIT.org. For most of the FACIT questionnaires, FACIT.org provides scoring syntax for use with commercial statistical software (SAS and SPSS). The FACTscorer R package is intended to serve as a free, reliable alternative for those without access to SAS or SPSS. Additionally, it will allow R users to both score and analyze the FACT and FACIT scales in R, avoiding the time-consuming and and error-prone process of transferring data back-and-forth between statistical software. Finally, use of the FACTscorer package will prevent many sources of scoring error common when using SAS and/or SPSS syntax (e.g., copy-paste errors and other accidental modifications to the syntax).
Depends: R (>= 3.1.1)
License: GPL-3
LazyData: true
NeedsCompilation: no
Packaged: 2015-01-13 06:14:51 UTC; Ray
Author: Ray Baser [aut, cre], Ayelet Greenberg [ctb]
Maintainer: Ray Baser
Repository: CRAN
Date/Publication: 2015-01-13 10:05:51

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New package dst with initial version 0.3
Package: dst
Type: Package
Title: Using Dempster-Shafer Theory
Version: 0.3
Date: 2014-12-30
Author: Claude Boivin, Stat.ASSQ
Maintainer: Claude Boivin
Description: This package allows you to make basic probability assignments on a set of possibilities (events) and combine these events with Dempster's rule of combination.
License: GPL-2
Collate: 'bca.R' 'belplau.R' 'combmasses.R' 'dempster.R' 'dotprod.R' 'doubles.R' 'dsrwon.R' 'dstCombListfacts.R' 'dstCombListfacts2.R' 'identRow.R' 'initsing.R' 'inters.R' 'nzdsr.R' 'plautrans.R' 'probCombListfacts.R' 'rplau.R' 'smppmexample.R' 'tabresul.R' 'tabresulSingl.R'
Packaged: 2015-01-08 02:38:05 UTC; chrono03
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-13 10:27:11

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New package chromer with initial version 0.1
Package: chromer
Title: Interface to Chromosome Counts Database API
Version: 0.1
Date: 2014-12-01
Authors@R: person("Matthew", "Pennell", role = c("aut", "cre"), email = "mwpennell@gmail.com")
Description: A programmatic interface to the Chromosome Counts Database (http://ccdb.tau.ac.il/). This package is part of the rOpenSci suite (http://ropensci.org)
Depends: R (>= 2.15)
Imports: dplyr, httr, data.table
Suggests: testthat, roxygen2
URL: http://www.github.com/ropensci/chromer
BugReports: http://www.github.com/ropensci/chromer/issues/new
License: CC0
Packaged: 2014-12-19 21:10:50 UTC; mwp
Author: Matthew Pennell [aut, cre]
Maintainer: Matthew Pennell
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-13 10:27:09

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Mon, 12 Jan 2015

New package mlxR with initial version 2.1.0
Package: mlxR
Type: Package
Version: 2.1.0
Title: Simulation of Longitudinal Data
Description: Simulation and visualization of complex models for longitudinal data. The models are encoded using the model coding language Mlxtran, automatically converted into C++ codes, compiled on the fly and linked to R using the Rcpp package. That allows one to implement very easily complex ODE-based models and complex statistical models, including mixed effects models, for continuous, count, categorical, and time-to-event data.
Authors@R: c( person( "Marc", "Lavielle", role = c("aut","cre"), email = "Marc.Lavielle@inria.fr" ), person( "Romain", "Francois", role = "aut", email = "romain@r-enthusiasts.com"), person( "Fazia", "Bellal", role = "ctb" ) )
URL: http://simulx.webpopix.org
BugReports: https://github.com/MarcLavielle/mlxR/issues
Depends: R (>= 3.0.3), ggplot2
Suggests: reshape2, gridExtra
Imports: XML, Rcpp (>= 0.11.3), tools
License: BSD_2_clause + file LICENSE
Copyright: Inria
Packaged: 2015-01-12 14:10:36 UTC; romain
Author: Marc Lavielle [aut, cre], Romain Francois [aut], Fazia Bellal [ctb]
Maintainer: Marc Lavielle
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-12 23:27:59

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New package hwwntest with initial version 1.3
Package: hwwntest
Type: Package
Title: Tests of White Noise using Wavelets
Version: 1.3
Date: 2014-05-14
Authors@R: c(person("Delyan", "Savchev", role=c("aut"),email="madbss@bristol.ac.uk"), person("Guy", "Nason", role=c("aut","cre"), email="g.p.nason@bristol.ac.uk"))
Description: Provides methods to test whether time series is consistent with white noise.
Depends: R(>= 3.0)
Imports: parallel, polynom, wavethresh
License: GPL-2
Packaged: 2015-01-12 15:54:43 UTC; magpn
Author: Delyan Savchev [aut], Guy Nason [aut, cre]
Maintainer: Guy Nason
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-13 00:18:30

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New package DEEPR with initial version 0.1
Package: DEEPR
Version: 0.1
Date: 2015-01-08
Title: Dirichlet-multinomial Evolutionary Event Profile Randomization (DEEPR) test
Author: Mark T Merilo
Maintainer: Mark T Merilo
Description: Tests for, and describe differences in event count profiles in groups of reconstructed cophylogenies
Depends: R (>= 3.0), dirmult
License: GPL (>= 2)
Packaged: 2015-01-12 20:25:16 UTC; Mark
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-12 23:03:29

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New package readGenalex with initial version 0.4.1
Package: readGenalex
Type: Package
Title: Read and Manipulate GenAlEx-format Genotype Files
Version: 0.4.1
Date: 2015-01-12
Author: Douglas G. Scofield
Maintainer: "Douglas G. Scofield"
Description: A collection of R functions to read genotype data file in GenAlEx format, as exported from Excel as a delimited text file, into an annotated data.frame, and manipulate it in that form. Several functions are provided for accessing and printing this data. GenAlEx and its documentation are available at http://biology-assets.anu.edu.au/GenAlEx.
URL: https://github.com/douglasgscofield/readGenalex
License: LGPL-3 | file LICENSE
Packaged: 2015-01-12 00:51:07 UTC; douglasgscofield
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-12 10:33:07

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New package HomoPolymer with initial version 1.0
Package: HomoPolymer
Type: Package
Title: Theoretical Model to Simulate Radical Polymerization
Version: 1.0
Date: 2014-12-23
Author: Gianmarco Polotti
Maintainer: Gianmarco Polotti
Description: A theoretical model to simulate radical polymerization. Material, energy and population balances are integrated for batch, semi batch and continuous process in a ideally mixed reactor. Limitations: single monomer (i.e.homo polymer), one phase (organic, aqueous). Datasets with chemical-physical data for the most common monomers is included. Some background in polymer science is suggested for its use. Graphical interface for a quick and friendly use is available.
Depends: R (>= 3.0.0), RGtk2, MenuCollection
Imports: deSolve
LazyData: true
LazyLoad: true
License: GPL-2
Packaged: 2015-01-11 19:21:42 UTC; PolGia0
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-12 10:27:23

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Sun, 11 Jan 2015

New package patchSynctex with initial version 0.1-0
Package: patchSynctex
Type: Package
Title: Communication between Editor and Viewer for Literate Programs
Version: 0.1-0
Date: 2015-01-10
Authors@R: c(person(given="Jan", family="Gleixner", email="jan.gleixner@gmail.com", role="aut"), person(given="Emmanuel", family="Charpentier", email="emm.charpentier@free.fr", role=c("aut", "cre")))
Depends: tools, stringr
Enhances: knitr, utils
Description: This utility eases the debugging of literate documents (noweb files) by patching the synchronization information (the .synctex(.gz) file) produced by pdflatex with concordance information produced by Sweave or knitr and Sweave or knitr ; this allows for bilateral communication between a text editor (visualizing the noweb source) and a viewer (visualizing the resultant PDF), thus bypassing the intermediate TeX file.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-01-11 08:58:22 UTC; charpent
Author: Jan Gleixner [aut], Emmanuel Charpentier [aut, cre]
Maintainer: Emmanuel Charpentier
Repository: CRAN
Date/Publication: 2015-01-11 16:53:11

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Sat, 10 Jan 2015

New package BACA with initial version 0.99.0
Package: BACA
Type: Package
Title: Bubble Chart to compare Biological Annotations by using DAVID
Version: 0.99.0
Date: 2014-06-19
Author: Vittorio Fortino and Dario Greco
Maintainer: Vittorio Fortino
Description: R-based graphical tool to concisely visualise and compare biological annotations queried from the DAVID web service. It provides R functions to perform enrichment analysis (via DAVID - http://david.abcc.ncifcrf.gov) on several gene lists at once, and then visualizing all the results in one generated figure that allows R users to compare the enrichments found in the lists.
License: GPL (>= 2)
Depends: R (>= 3.0.0)
Imports: RDAVIDWebService, ggplot2, rJava
VignetteBuilder: knitr
Suggests: knitr
Packaged: 2015-01-10 12:13:54 UTC; vittoriofortino2
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-10 17:04:39

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New package neuRosim with initial version 0.2-12
Package: neuRosim
Type: Package
Title: Functions to Generate fMRI Data Including Activated Data, Noise Data and Resting State Data
Version: 0.2-12
Date: 2015-01-09
Author: Marijke Welvaert with contributions from Joke Durnez, Beatrijs Moerkerke, Yves Rosseel and Geert Verdoolaege
Maintainer: Marijke Welvaert
Depends: R (>= 3.1.1), deSolve
Description: The package allows users to generate fMRI time series or 4D data. Some high-level functions are created for fast data generation with only a few arguments and a diversity of functions to define activation and noise. For more advanced users it is possible to use the low-level functions and manipulate the arguments.
License: GPL (>= 2)
LazyLoad: yes
Repository: CRAN
Date/Publication: 2015-01-10 10:01:21
Packaged: 2015-01-09 00:52:20 UTC; wel18s
NeedsCompilation: yes

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New package IFP with initial version 0.1.1
Package: IFP
Version: 0.1.1
Date: 2014-12-28
Title: Identifying Functional Polymorphisms
Author: Leeyoung Park
Maintainer: Leeyoung Park
Description: A suite for identifying causal models using relative concordances and identifying causal polymorphisms in case-control genetic association data, especially with large controls re-sequenced data.
License: GPL (>= 2)
Depends: R (>= 2.11.1)
Imports: haplo.stats,coda
Suggests:
URL: http://www.r-project.org
NeedsCompilation: yes
Repository: CRAN
Packaged: 2015-01-07 14:58:19 UTC; x998ply
Date/Publication: 2015-01-10 10:01:19

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Fri, 09 Jan 2015

New package RFmarkerDetector with initial version 1.0
Package: RFmarkerDetector
Type: Package
Title: Multivariate Analysis of Metabolomics Data using Random Forests
Version: 1.0
Date: 2014-11-24
Author: Piergiorgio Palla, Giuliano Armano
Maintainer: Piergiorgio Palla
Description: A collection of tools for multivariate analysis of metabolomics data, which includes several preprocessing methods (normalization, scaling) and various exploration and data visualization techniques (Principal Components Analysis and Multi Dimensional Scaling). The core of the package is the Random Forest algorithm used for the construction, optimization and validation of classification models with the aim of identifying potentially relevant biomarkers.
License: GPL-3
LazyData: true
Imports: randomForest, ggplot2, UsingR, WilcoxCV, ROCR
Depends: AUCRF
Packaged: 2015-01-09 14:23:32 UTC; Pg
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-10 04:15:07

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New package RBPcurve with initial version 1.0-20
Package: RBPcurve
Type: Package
Title: The Residual-based Predictiveness Curve
Version: 1.0-20
Date: 2015-01-09
Author: Giuseppe Casalicchio, Bernd Bischl
URL: https://github.com/giuseppec/RBPcurve
BugReports: https://github.com/giuseppec/RBPcurve/issues
Maintainer: Giuseppe Casalicchio
Description: The package provides a visual tool, the RBP curve, to assess the performance of prediction models.
License: GPL-3
Depends: mlr
Imports: BBmisc, checkmate, shape, TeachingDemos
Suggests: testthat, mlbench, mboost
Packaged: 2015-01-09 10:17:33 UTC; Admin2
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-09 21:57:51

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New package DiagrammeR with initial version 0.1
Package: DiagrammeR
Type: Package
Title: Create diagrams and flowcharts using R.
Version: 0.1
Date: 2015-01-06
Author: Richard Iannone
Maintainer: Richard Iannone
Description: Create diagrams and flowcharts using R.
License: MIT + file LICENSE
Imports: htmlwidgets (>= 0.3.2)
Suggests: knitr
VignetteBuilder: knitr
Packaged: 2015-01-09 05:36:30 UTC; riannone
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-09 10:02:34

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New package blockTools with initial version 0.6-2
Package: blockTools
Type: Package
Title: Block, Assign, and Diagnose Potential Interference in Randomized Experiments
Version: 0.6-2
Date: 2015-01-08
Author: Ryan T. Moore and Keith Schnakenberg
Maintainer: Ryan T. Moore
Imports: MASS
Suggests: nbpMatching, RItools, xtable
Description: Blocks units into experimental blocks, with one unit per treatment condition, by creating a measure of multivariate distance between all possible pairs of units. Maximum, minimum, or an allowable range of differences between units on one variable can be set. Randomly assign units to treatment conditions. Diagnose potential interference between units assigned to different treatment conditions. Write outputs to .tex and .csv files.
License: GPL (>= 2) | file LICENSE
Packaged: 2015-01-08 23:44:44 UTC; rtm
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-09 06:24:26

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Thu, 08 Jan 2015

New package sra with initial version 0.1.1
Package: sra
Type: Package
Title: Selection Response Analysis
Version: 0.1.1
Date: 2015-01-08
Author: Arnaud Le Rouzic
Maintainer: Arnaud Le Rouzic
Imports: stats4
Description: This package (sra) provides a set of tools to analyse artificial-selection response datasets. The data typically feature for several generations the average value of a trait in a population, the variance of the trait, the population size and the average value of the parents that were chosen to breed. Sra implements two families of models aiming at describing the dynamics of the genetic architecture of the trait during the selection response. The first family relies on purely descriptive (phenomenological) models, based on an autoregressive framework. The second family provides different mechanistic models, accounting e.g. for inbreeding, mutations, genetic and environmental canalization, or epistasis. The parameters underlying the dynamics of the time series are estimated by maximum likelihood. The sra package thus provides (i) a wrapper for the R functions mle() and optim() aiming at fitting in a convenient way a predetermined set of models, and (ii) some functions to plot and analyze the output of the models.
License: GPL-2
Packaged: 2015-01-08 16:45:07 UTC; lerouzic
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-08 18:21:13

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New package noia with initial version 0.97.1
Package: noia
Type: Package
Title: Implementation of the Natural and Orthogonal InterAction (NOIA) model
Version: 0.97.1
Date: 2015-01-06
Author: Arnaud Le Rouzic (2007-2014), Arne B. Gjuvsland (2010), Olivier Ariste (2010)
Maintainer: Arnaud Le Rouzic
Depends: stats
LazyData: yes
Description: The NOIA model, as described extensively in Alvarez-Castro & Carlborg (2007), is a framework facilitating the estimation of genetic effects and genotype-to-phenotype maps. This package provides the basic tools to perform linear and multilinear regressions from real populations (provided the phenotype and the genotype of every individuals), estimating the genetic effects from different reference points, the genotypic values, and the decomposition of genetic variances in a multi-locus, 2 alleles system. This package is presented in Le Rouzic & Alvarez-Castro (2008).
License: GPL-2
Packaged: 2015-01-06 17:21:28 UTC; lerouzic
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-08 18:21:15

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New package radir with initial version 1.0
Package: radir
Type: Package
Title: Inverse-Regression Estimation of Radioactive Doses
Version: 1.0
Date: 2014-10-03
Encoding: UTF-8
Author: David Moriña (Centre for Research in Environmental Epidemiology, CREAL), Manuel Higueras (Universitat Autònoma de Barcelona and Public Health England) and Pedro Puig (Universitat Autònoma de Barcelona)
Maintainer: David Moriña Soler
Description: Radioactive doses estimation using individual chromosomal aberrations information. See Higueras M, Puig P, Ainsbury E, Rothkamm K. (2015). A new inverse regression model applied to radiation biodosimetry. Proceedings of the Royal Society A, 471
Depends: R (>= 3.1.1), hermite
Repository: CRAN
License: GPL (>= 2)
Packaged: 2015-01-08 12:50:59 UTC; dmorinya
NeedsCompilation: no
Date/Publication: 2015-01-08 17:02:05

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New package qrLMM with initial version 1.0-9
Package: qrLMM
Type: Package
Title: Quantile Regression for Linear Mixed-Effects Models
Version: 1.0-9
Date: 2014-12-19
Author: Christian E. Galarza and Victor H. Lachos
Maintainer: Christian E. Galarza
Depends: nlme
Imports: matrixcalc, mvtnorm, ghyp, quantreg, psych, tcltk
Description: Quantile regression (QR) for Linear Mixed-Effects Models via the asymmetric Laplace distribution (ALD). It uses the Stochastic Approximation of the EM (SAEM) algorithm for deriving exact maximum likelihood estimates and full inference results for the fixed-effects and variance components. It also provides graphical summaries for assessing the algorithm convergence and fitting results.
License: GPL (>= 2)
Packaged: 2015-01-08 00:27:24 UTC; ra143711
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-08 12:24:39

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New package interferenceCI with initial version 1.1
Package: interferenceCI
Type: Package
Title: Exact Confidence Intervals in the Presence of Interference
Version: 1.1
Date: 2015-1-7
Author: Joseph Rigdon
Maintainer: Joseph Rigdon
Depends: compiler, gtools
Description: Computes large sample confidence intervals of Liu and Hudgens (2014), exact confidence intervals of Tchetgen Tchetgen and VanderWeele (2012), and exact confidence intervals of Rigdon and Hudgens (2014) for treatment effects on a binary outcome in two-stage randomized experiments with interference.
License: GPL-3
Packaged: 2015-01-07 21:32:53 UTC; joe
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-08 12:20:14

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Wed, 07 Jan 2015

New package RGENERATEPREC with initial version 1.0
Package: RGENERATEPREC
Maintainer: Emanuele Cordano
License: GPL (>= 2)
Title: Tools To Generate Daily-Precipitation Time Series
Type: Package
Author: Emanuele Cordano
Description: The method 'generate' is extended for spatial multi-site stochastic generation of daily precipitation. It generates precipitation occurrence in several sites using logit regression (Generalized Linear Models) and D.S. Wilks' approach (Journal of Hydrology, 1998).
Version: 1.0
Repository: CRAN
Date: 2015-01-05
Depends: R (>= 3.0), copula, RGENERATE, blockmatrix, Matrix, stringr
Imports: RMAWGEN
URL: https://github.com/ecor/RGENERATEPREC
Packaged: 2015-01-07 18:04:07 UTC; ecor
NeedsCompilation: no
Date/Publication: 2015-01-07 19:39:29

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New package QCAtools with initial version 0.1
Package: QCAtools
Title: Helper functions for QCA in R
Version: 0.1
Author: Jirka Lewandowski [aut, cre]
Maintainer: Jirka Lewandowski
Description: Helper functions for Qualitative Comparative Analysis: evaluate and plot Boolean formulae on fuzzy set score data, apply Boolean operations, compute consistency and coverage measures
Depends: R (>= 3.1.0), stringr (>= 0.6.2), QCA (>= 1.1), ggplot2 (>= 0.9.3.1), directlabels (>= 2013.6.15)
License: GPL (>= 3)
LazyData: true
Packaged: 2015-01-07 18:26:37 UTC; jlewando
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-07 19:39:31

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New package BEQI2 with initial version 2.0-0
Package: BEQI2
Type: Package
Title: Benthic Ecosystem Quality Index 2
Description: Tool for analysing benthos data. It estimates several quality indices like the total abundance of species, species richness, Margalef's d, AZTI Marine Biotic Index (AMBI), and the BEQI-2 index. Furthermore, additional (optional) features are provided that enhance data preprocessing: (1) genus to species conversion, i.e.,taxa counts at the taxonomic genus level can optionally be converted to the species level and (2) pooling: small samples are combined to bigger samples with a standardized size to (a) meet the data requirements of the AMBI, (b) generate comparable species richness values and (c) give a higher benthos signal to noise ratio.
Version: 2.0-0
Date: 2015-01-06
Authors@R: c(person(given = "Willem", family = "van Loon", email = "willem.van.loon@rws.nl", role = c("aut", "cph")), person(given = "Dennis", family = "Walvoort", email = "dennis.Walvoort@wur.nl", role = c("aut", "cre")))
Depends: R (>= 3.0.2), methods
Imports: knitr, markdown, jsonlite, xtable, plyr, reshape2
Suggests: testthat
VignetteBuilder: knitr
License: GPL (>= 3)
Packaged: 2015-01-06 20:41:20 UTC; dennis
Author: Willem van Loon [aut, cph], Dennis Walvoort [aut, cre]
Maintainer: Dennis Walvoort
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-07 06:33:26

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Tue, 06 Jan 2015

New package physiology with initial version 0.2.2
Package: physiology
Title: Calculate Physiological Characteristics of Adults and Children
Version: 0.2.2
Date: 2015-01-03
Authors@R: person("Jack O. Wasey", role=c("aut", "cre"), email="jack@jackwasey.com")
Description: A variety of formulae are provided for estimation of height, weight and fluid compartments of adults and children. Each formula is referenced to the original publication. Warnings can be given for estimation based on input data outside of normal ranges. Future functions will cover more material with a focus on anaesthesia, critical care and peri-operative medicine.
URL: https://github.com/jackwasey/physiology
Depends: R (>= 3.0.2)
Suggests: ggplot2, reshape2, testthat, knitr
License: GPL-3
BugReports: https://github.com/jackwasey/physiology/issues
VignetteBuilder: knitr
Packaged: 2015-01-05 16:01:01 UTC; jwasey1
Author: Jack O. Wasey [aut, cre]
Maintainer: Jack O. Wasey
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-06 19:49:31

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New package jwutil with initial version 1.0.2
Package: jwutil
Title: Utilities for Data Manipulation, Disk Caching, Testing
Version: 1.0.2
Date: 2015-01-03
Authors@R: person("Jack O. Wasey", role = c("aut", "cre"), email = "jack@jackwasey.com")
Description: This is a set of simple utilities for various data manipulation and caching tasks. The goal is to use base tools well, without bringing in any dependencies. Main areas of interest are data frame manipulation, such as converting factors in multiple binary indicator columns, and disk caching of data frames (which is optionally done by date range). There are testing functions which provide testthat expectations to permute arguments to function calls. There are functions and data to test extreme numbers, dates, and bad input of various kinds which should allow testing failure and corner cases. The test suite has many examples of usage.
URL: https://github.com/jackwasey/jwutil
Depends: R (>= 3.1.1)
Suggests: testthat
License: GPL-3
BugReports: https://github.com/jackwasey/jwutil/issues
Encoding: UTF-8
Packaged: 2015-01-06 13:34:04 UTC; jwasey1
Author: Jack O. Wasey [aut, cre]
Maintainer: Jack O. Wasey
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-06 19:50:43

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New package CEGO with initial version 1.0.1108
Package: CEGO
Version: 1.0.1108
Title: Combinatorial Efficient Global Optimization
Author: Martin Zaefferer
Maintainer: Martin Zaefferer
Description: Model building, surrogate model based optimization and Efficient Global Optimization in combinatorial or mixed search spaces.
License: GPL (>= 3)
Type: Package
LazyLoad: yes
Depends: R (>= 3.0.0)
Imports: MASS, stats, DEoptim
Suggests: nloptr
ByteCompile: TRUE
Date: 06.01.2015
Date/Publication: 2015-01-06 17:35:45
Packaged: 2015-01-06 14:58:19 UTC; Martin
NeedsCompilation: yes
Repository: CRAN

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New package medicalrisk with initial version 1.1
Package: medicalrisk
Type: Package
Title: Medical Risk and Comorbidity Tools for ICD-9-CM Data
Version: 1.1
Date: 2015-01-04
Authors@R: c(person("Patrick", "McCormick", role = c("aut", "cre"), email = "patrick.mccormick@alum.mit.edu"), person("Thomas", "Joseph", role = "aut", email = "thomas.joseph@mountsinai.org"))
Description: Generates risk estimates and comorbidity flags from ICD-9-CM codes available in administrative medical datasets. The package supports the Charlson Comorbidity Index, the Elixhauser Comorbidity classification, the Revised Cardiac Risk Index, and the Risk Stratification Index. Methods are table-based, fast, and use the plyr package, so parallelization is possible for large jobs. Also includes a sample of real ICD-9 data for 100 patients from a publicly available dataset.
Depends: R (>= 2.11.0)
Imports: plyr (>= 1.5), reshape2, hash
Suggests: testthat, knitr
License: GPL-3
LazyData: true
VignetteBuilder: knitr
Packaged: 2015-01-06 02:54:46 UTC; patrick
Author: Patrick McCormick [aut, cre], Thomas Joseph [aut]
Maintainer: Patrick McCormick
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-06 05:43:42

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Mon, 05 Jan 2015

New package cquad with initial version 1.0
Package: cquad
Type: Package
Title: Conditional ML for Quadratic Exponential Models for Binary Panel Data
Version: 1.0
Date: 2015-01-05
Author: Francesco Bartolucci (University of Perugia), Claudia Pigini (University of Perugia)
Maintainer: Francesco Bartolucci
Description: The package estimates, by conditional maximum likelihood, the quadratic exponential model proposed by Bartolucci & Nigro (2010) and a simplified and a modified version of this model. The quadratic exponential model is suitable for the analysis of binary longitudinal data when state dependence (further to the effect of the covariates and a time-fixed individual intercept) has to be taken into account. Therefore, this is an alternative to the dynamic logit model having the advantage of easily allowing conditional inference in order to eliminate the individual intercepts and then getting consistent estimates of the parameters of main interest (for the covariates and the lagged response). The simplified version of this model does not distinguish, as the original model does, between the last time occasion and the previous occasions. The modified version formulates in a different way the interaction terms and it may be used to test in a easy way state dependence as shown in Bartolucci, Nigro & Pigini (2013). The package also includes estimation of the dynamic logit model by a pseudo conditional estimator based on the quadratic exponential model, as proposed by Bartolucci & Nigro (2012).
License: GPL (>= 2)
Depends: R (>= 2.0.0)
Packaged: 2015-01-05 20:22:01 UTC; francescobartolucci
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-05 22:36:09

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New package RadTran with initial version 1.0
Package: RadTran
Type: Package
Title: Radon and Soil Gas Transport in 2D Porous Medium
Version: 1.0
Date: 2014-10-14
Depends: R (>= 2.10), ReacTran
Imports: rootSolve
Author: Francisco Lopes
Maintainer: Francisco Lopes
Description: Contains 4 different functions for radon and soil gas transport in a porous medium.
License: GPL-2
Packaged: 2015-01-05 14:42:02 UTC; Francisco
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-05 16:46:06

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New package sdwd with initial version 1.0.1
Package: sdwd
Title: Sparse Distance Weighted Discrimination
Version: 1.0.1
Date: 2015-01-04
Author: Boxiang Wang , Hui Zou
Maintainer: Boxiang Wang
Depends: Matrix
Description: Solves the solution paths of the sparse distance weighted discrimination (DWD) with the L1, the elastic-net, and the adaptive elastic-net penalties.
License: GPL-2
Repository: CRAN
NeedsCompilation: yes
Packaged: 2015-01-04 23:39:47 UTC; Boxiang
Date/Publication: 2015-01-05 07:45:05

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Sun, 04 Jan 2015

New package ThreeArmedTrials with initial version 0.1-0
Package: ThreeArmedTrials
Type: Package
Title: Design and Analysis of Clinical Non-inferiority or Superiority Trials with Active and Placebo Control
Version: 0.1-0
Date: 2015-01-04
Author: Tobias Muetze
Maintainer: Tobias Muetze
Description: Design and analyze three-armed non-inferiority or superiority trials which follow a gold-standard design, i.e. trials with an experimental treatment, an active and a placebo control. The following distribution of endpoints is covered: negative binomial distribution.
Depends: R (>= 3.0.0)
Imports: stats, MASS
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2015-01-04 17:28:53 UTC; tonux
Repository: CRAN
Date/Publication: 2015-01-04 23:44:03

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New package rUnemploymentData with initial version 1.0.0
Package: rUnemploymentData
Title: Data and Functions for USA State and County Unemployment Data
Description: Contains data and visualization functions for USA unemployment data. Data comes from the US Bureau of Labor Statistics (BLS). State data is in ?df_state_unemployment and covers 2000-2013. County data is in ?df_county_unemployment and covers 1990-2013. Choropleth maps of the data can be generated with ?state_unemployment_choropleth and ?county_unemployment_choropleth respectively. See the vignettes for additional information.
Version: 1.0.0
Author: Ari Lamstein [cre]
Maintainer: Ari Lamstein
URL: https://github.com/trulia/rUnemploymentData/, https://groups.google.com/forum/#!forum/choroplethr
BugReports: https://github.com/trulia/choroplethr/issues
Copyright: Trulia, Inc.
License: BSD_3_clause + file LICENSE
Imports: stringr, choroplethr, rvest
Suggests: choroplethrMaps, knitr, testthat
VignetteBuilder: knitr
Packaged: 2015-01-04 22:09:35 UTC; arilamstein
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-04 23:32:00

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New package gistr with initial version 0.1.0
Package: gistr
Title: Work with GitHub Gists
Description: Work with GitHub gists from R (e.g., http://en.wikipedia.org/wiki/GitHub#Gist, https://help.github.com/articles/about-gists/). A gist is simply one or more files with code/text/images/etc. gistr allows the user to create new gists, update gists with new files, rename files, delete files, get and delete gists, star and un-star gists, fork gists, open a gist in your default browser, get embed code for a gist, list gist commits, and get rate limit information when authenticated. Some requests require authentication and some do not. Gists website: https://gist.github.com/.
Version: 0.1.0
Date: 2015-01-04
Authors@R: c(person("Ramnath", "Vaidyanathan", role = "aut", email = "ramnath.vaidya@gmail.com"), person("Karthik", "Ram", role = "aut", email = "karthik.ram@gmail.com"), person("Scott", "Chamberlain", role = c("aut", "cre"), email = "myrmecocystus@gmail.com"))
License: MIT + file LICENSE
URL: https://github.com/ropensci/gistr
BugReports: http://www.github.com/ropensci/gistr/issues
VignetteBuilder: knitr
Imports: jsonlite, httr, magrittr, knitr
Suggests: roxygen2, testthat
Packaged: 2015-01-04 17:05:29 UTC; sacmac
Author: Ramnath Vaidyanathan [aut], Karthik Ram [aut], Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-04 23:49:00

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New package FAmle with initial version 1.3.2
Package: FAmle
Type: Package
Title: Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions
Version: 1.3.2
Date: 2015-01-01
Author: Francois Aucoin
Maintainer: Thomas Petzoldt
Depends: mvtnorm
Suggests: FAdist
Description: A series of functions that might be useful in carrying out maximum likelihood and Bayesian estimations of univariate probability distributions
License: GPL-2
URL: https://github.com/tpetzoldt/FAmle
Packaged: 2015-01-04 18:31:30 UTC; thpe
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-05 00:00:43

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New package Gmisc with initial version 1.0
Package: Gmisc
Version: 1.0
Date: 2015-01-02
Title: Descriptive Statistics, Transition Plots, and More
Author: Max Gordon
Maintainer: Max Gordon
Description: Tools for making the descriptive "Table 1" used in medical articles, a transition plot for showing changes between categories, a method for variable selection based on the SVD, Bézier lines with arrows complementing the ones in the 'grid' package, and more.
License: GPL (>= 3)
URL: http://gforge.se
BugReports: https://github.com/gforge/Gmisc/issues
Biarch: yes
Depends: htmlTable
Imports: grid, lattice, sp, Hmisc, forestplot
Suggests: testthat, knitr
Encoding: UTF-8
NeedsCompilation: no
VignetteBuilder: knitr
Packaged: 2015-01-02 22:05:16 UTC; Max
Repository: CRAN
Date/Publication: 2015-01-04 18:55:33

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New package tsc with initial version 1.0-2
Package: tsc
Type: Package
Title: Likelihood-ratio Tests for Two-Sample Comparisons
Version: 1.0-2
Date: 2014-11-20
Author: Yang Zhao, Albert Vexler, Alan Hutson
Maintainer: Yang Zhao
Description: Performs the two-sample comparisons using the following exact test procedures: the exact likelihood-ratio test (LRT) for equality of two normal populations proposed in Zhang et al. (2012); the combined test based on the LRT and Shapiro-Wilk test for normality via the Bonferroni correction technique; the newly proposed density-based empirical likelihood (DBEL) ratio test. To calculate p-values of the DBEL procedures, three procedures are used: (a) the traditional Monte Carlo (MC) method implemented in C++, (b) a new interpolation method based on regression techniques to operate with tabulated critical values of the test statistic; (c) a Bayesian type method that uses the tabulated critical values as the prior information and MC generated DBEL-test-statistic's values as data.
License: GPL (>= 2)
LazyData: yes
Packaged: 2015-01-03 01:47:08 UTC; starvictoria
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-04 07:07:54

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New package jiebaRD with initial version 0.1
Package: jiebaRD
Type: Package
Title: Chinese Text Segmentation Data for jiebaR Package
Description: jiebaR is a package for Chinese text segmentation, keyword extraction and speech tagging. This package provides the data files required by jiebaR.
Version: 0.1
Date: 2015-01-03
Author: Qin Wenfeng
Maintainer: Qin Wenfeng
License: MIT + file LICENSE
Suggests: jiebaR
URL: https://github.com/qinwf/jiebaRD/
BugReports: https://github.com/qinwf/jiebaRD/issues
NeedsCompilation: no
Packaged: 2015-01-04 03:40:31 UTC; outwen
Repository: CRAN
Date/Publication: 2015-01-04 07:11:14

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New package AnglerCreelSurveySimulation with initial version 0.2.1
Package: AnglerCreelSurveySimulation
Version: 0.2.1
Date: 2015-01-03
Title: Simulate a Bus Route Creel Survey of Anglers
Author: Steven Ranney
Maintainer: Steven H. Ranney
Depends: R (>= 3.0.2)
Description: Create an angler population, sample the population with a user-specified survey times, and calculate metrics from a bus route-type creel survey.
License: GPL-3
Packaged: 2015-01-03 19:56:29 UTC; Steven Harris Ranney
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-04 06:55:13

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Sat, 03 Jan 2015

New package NAM with initial version 1.0
Package: NAM
Type: Package
Title: Nested Association Mapping
Version: 1.0
Date: 2014-12-23
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu
Maintainer: Alencar Xavier
Description: NAM, biparental and random populations toolbox
License: GPL-3
Imports: Rcpp, Matrix, missForest
LinkingTo: Rcpp
Packaged: 2014-12-23 00:56:24 UTC; alencar_x
Depends: R (>= 2.10)
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-01-04 00:38:47

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New package LDPD with initial version 1.0.2
Package: LDPD
Type: Package
Title: Probability of Default Calibration
Version: 1.0.2
Date: 2015-01-03
Author: Denis Surzhko
Maintainer: Denis Surzhko
Description: Implementation of most popular approaches to PD (probability of default) calibration: Quasi Moment Matching algorithm (D.Tasche), algorithm proposed by M.van der Burgt, K.Pluto and D.Tasche's most prudent estimation methodology.
License: GPL-2
Imports: MASS, nleqslv
Packaged: 2015-01-03 09:16:45 UTC; user
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-03 10:26:08

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New package PivotalR with initial version 0.1.17.45
Package: PivotalR
Type: Package
Title: A Fast, Easy-to-use Tool for Manipulating Tables in Databases and A Wrapper of MADlib
Version: 0.1.17.45
Date: 2014-09-15
Author: Predictive Analytics Team at Pivotal Inc. , with contributions from Data Scientist Team at Pivotal Inc.
Maintainer: Caleb Welton
Contact: Predictive Analytics Team at Pivotal Inc.
Depends: R (>= 2.14.0), methods, Matrix
Enhances: DBI, RPostgreSQL, shiny, testthat, tools, rpart
Description: R interface of Pivotal Data Fabrics running on PostgreSQL or Pivotal (Greenplum and HAWQ) database with parallel and distributed computation ability for big data analytics. PivotalR is a package that enables users of R to interact with the Pivotal (Greenplum) Database as well as Pivotal HD/HAWQ for Big Data analytics. It does so by providing an interface to the operations on tables/views in the database. These operations are almost the same as those of data.frame. Thus the users of R do not need to learn SQL when they operate on the objects in the database. It also provides a wrapper for MADlib, which is an open-source library for parallel and scalable in-database analytics.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
NeedsCompilation: yes
Packaged: 2014-12-31 18:52:23 UTC; hqian
Repository: CRAN
Date/Publication: 2015-01-03 07:56:55

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New package partools with initial version 1.0.1
Package: partools
Version: 1.0.1
Author: Norm Matloff
Maintainer: Norm Matloff
Date: 12/15/2014
Title: Tools for the 'Parallel' Package
Description: Miscellaneous utilities for the 'parallel' package, cluster-oriented section. Includes a debugging aid.
Depends: parallel
OS_type: Linux/Mac/Unix needed for the dbs() debugging tool
LazyLoad: no
ByteCompile: yes
NeedsCompilation: no
License: GPL (>= 2)
Repository: CRAN
Packaged: 2015-01-03 00:41:47 UTC; normanmatloff
Date/Publication: 2015-01-03 07:03:08

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Fri, 02 Jan 2015

New package linkR with initial version 1.0.0
Package: linkR
Date: 2015-01-01
Type: Package
Title: 3D Lever and Linkage Mechanism Modeling
Description: Creates kinematic and static force models of 3D levers and linkage mechanisms, with particular application to the fields of engineering and biomechanics.
Version: 1.0.0
Depends: R (>= 2.11.0)
Imports: svgViewR
Author: Aaron Olsen
Maintainer: Aaron Olsen
Repository: CRAN
URL: http://home.uchicago.edu/~aolsen/software/linkr.shtml
License: GPL (>= 2)
Packaged: 2015-01-01 18:57:54 UTC; aaron
NeedsCompilation: no
Date/Publication: 2015-01-02 06:45:33

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New package dropR with initial version 0.1
Package: dropR
Title: Analyze Drop Out of an Experiment or Survey
Description: Drop out analysis for psychologists in a R based web application. Shiny is used to visualize and analyze drop outs tailored to the methods of online survey methodology. Concept and app presented at the SCIP Conference in Long Beach, California.
Version: 0.1
Authors@R: as.person(c('Matthias Bannert [aut, cre]','Ulf-Dietrich Reips [aut]'))
Author: Matthias Bannert [aut, cre], Ulf-Dietrich Reips [aut]
Maintainer: Matthias Bannert
Depends: R (>= 3.0.0)
Imports: plyr,shiny
Copyright: See file COPYRIGHTS
License: GPL-2
LazyData: true
Packaged: 2015-01-01 09:42:38 UTC; mbannert
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-02 06:52:56

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Thu, 01 Jan 2015

New package SRCS with initial version 1.0
Package: SRCS
Title: Statistical Ranking Color Scheme for Multiple Pairwise Comparisons
Description: Implementation of the SRCS method for a color-based visualization of the results of multiple pairwise tests on a large number of problem configurations, proposed in: I.G. del Amo, D.A. Pelta. SRCS: a technique for comparing multiple algorithms under several factors in dynamic optimization problems. In: E. Alba, A. Nakib, P. Siarry (Eds.), Metaheuristics for Dynamic Optimization. Series: Studies in Computational Intelligence 433, Springer, Berlin/Heidelberg, 2012.
Version: 1.0
Date: 2014-12-30
Author: Pablo J. Villacorta
Maintainer: Pablo J. Villacorta
Imports: parallel
License: LGPL (>= 3)
URL: http://decsai.ugr.es/~pjvi
LazyData: true
Packaged: 2015-01-01 18:53:59 UTC; Pablo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-01-01 21:29:35

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New package Rdsdp with initial version 1.0.1
Package: Rdsdp
Version: 1.0.1
Title: R Interface to DSDP Semidefinite Programming Library
Author: Zhisu Zhu, Yinyu Ye (DSDP by Steve Benson, Yinyu Ye and Xiong Zhang)
Maintainer: Zhisu Zhu
Description: R interface to DSDP semidefinite programming library. Installs version 5.8 of DSDP from DSDP website. An existing installation of DSDP may be used by passing the proper configure arguments to the installation command.
LazyLoad: yes
License: GPL-3
URL: http://www.mcs.anl.gov/hs/software/DSDP
NeedsCompilation: yes
Packaged: 2014-12-31 06:48:48 UTC; zhisu
X-CRAN-Comment: Archived on 2014-12-24 as failed (often segfaulting) on most platforms.
Repository: CRAN
Date/Publication: 2015-01-01 06:45:56

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New package glrt with initial version 2.0
Package: glrt
Type: Package
Title: Generalized Logrank Tests for Interval-censored Failure Time Data
Version: 2.0
Depends: R (>= 3.1.1), survival, stats
Date: 2014-12-24
Author: Qiang Zhao and Jianguo Sun
Maintainer: Qiang Zhao
Description: Functions to conduct four generalized logrank tests and a score test under a proportional hazards model
License: GPL-2
Repository: CRAN
Packaged: 2014-12-31 21:51:20 UTC; liyanzhao
NeedsCompilation: no
Date/Publication: 2015-01-01 05:46:56

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Wed, 31 Dec 2014

New package snpRF with initial version 0.3
Package: snpRF
Title: Random Forest for SNPs to Prevent X-chromosome SNP Importance Bias
Version: 0.3
Date: 2014-12-31
Depends: R (>= 2.5.0), stats
Suggests: RColorBrewer, MASS
Author: Fortran original by Leo Breiman and Adele Cutler, R port by Andy Liaw and Matthew Wiener. Modifications of randomForest v 4.6-7 for SNPs by Greg Jenkins based on a method developed by Stacey Winham, Greg Jenkins and Joanna Biernacka.
Description: A modification of Breiman and Cutler's classification random forests modified for SNP (Single Nucleotide Polymorphism) data (based on randomForest v4.6-7) to prevent X-chromosome SNP variable importance bias compared to autosomal SNPs by simulating the process of X chromosome inactivation. Classification is based on a forest of trees using random subsets of SNPs and other variables as inputs.
Maintainer: Greg Jenkins
License: GPL (>= 2)
Packaged: 2014-12-31 15:33:18 UTC; jenkins
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-31 18:18:49

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New package strataG with initial version 0.9.2
Package: strataG
Type: Package
Title: Summaries and Population Structure Analyses of Haplotypic and Genotypic Data
Description: A toolkit for analyzing stratified population genetic data.
Version: 0.9.2
Date: 2014-11-14
Author: Eric Archer
Maintainer: Eric Archer
Imports: parallel, swfscMisc, pegas, ape, MASS, reshape2
LinkingTo: Rcpp
License: GNU General Public License
Packaged: 2014-12-31 07:38:26 UTC; eric.archer
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-31 16:07:32

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New package Quor with initial version 0.1
Package: Quor
Version: 0.1
Date: 2014-12-30
Title: Quantile Ordering
Author: Adriano Polpo , Carlos A. de B. Pereira , Cassio P. de Campos
Maintainer: Cassio P. de Campos
Depends: R (>= 3.1.2)
Imports: combinat
Description: Functions to compute confidence statistics for ordering population quantiles.
License: GPL (>= 3) | file LICENSE
Repository: CRAN
URL: http://code.google.com/p/quor/
Packaged: 2014-12-30 14:10:55 UTC; cassio
NeedsCompilation: yes
Date/Publication: 2014-12-31 16:09:22

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New package digitalPCR with initial version 1.0
Package: digitalPCR
Type: Package
Title: Estimate copy number for digital PCR
Version: 1.0
Date: 2014-12-28
Author: Xutao Deng
Maintainer: Xutao Deng
Description: The assay sensitivity is the minimum number of copies that the digital PCR assay can detect. Users provide serial dilution results in the format of counts of positive and total reaction wells. The output is the estimated assay sensitivity and the copy number per well in the initial dilute.
License: GPL-2
Packaged: 2014-12-31 09:00:26 UTC; xutao
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-31 16:07:37

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New package blsAPI with initial version 0.1.1
Package: blsAPI
Version: 0.1.1
Title: Request Data From The U.S. Bureau of Labor Statistics API
Author: Michael Silva
Maintainer: Michael Silva
Description: Allows users to request data for one or multiple series through the U.S. Bureau of Labor Statistics API. Users provide parameters as specified in http://www.bls.gov/developers/api_signature.htm and the function returns a JSON string.
Depends: R (>= 3.1.1)
Imports: rjson, RCurl
License: GPL (>= 2)
LazyData: true
Packaged: 2014-12-31 12:58:06 UTC; The Silva Family
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-31 16:14:09

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New package FeaLect with initial version 1.7
Package: FeaLect
Type: Package
Title: Scores Features for Feature Selection
Version: 1.7
Date: 2014-12-03
Author: Habil Zare
Maintainer: Habil Zare
Depends: lars, rms
Description: For each feature, a score is computed that can be useful for feature selection. Several random subsets are sampled from the input data and for each random subset, various linear models are fitted using lars method. A score is assigned to each feature based on the tendency of LASSO in including that feature in the models.Finally, the average score and the models are returned as the output. The features with relatively low scores are recommended to be ignored because they can lead to overfitting of the model to the training data. Moreover, for each random subset, the best set of features in terms of global error is returned. They are useful for applying Bolasso, the alternative feature selection method that recommends the intersection of features subsets.
License: GPL (>= 2)
LazyLoad: yes
Repository: CRAN
Date/Publication: 2014-12-31 05:47:23
Packaged: 2014-12-30 16:55:55 UTC; habil
NeedsCompilation: no

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Tue, 30 Dec 2014

New package RAMP with initial version 1.0
Package: RAMP
Type: Package
Title: Regularized Generalized Linear Models with Interaction Effects
Version: 1.0
Date: 2014-12-24
Author: Yang Feng, Ning Hao and Hao Helen Zhang
Maintainer: Yang Feng
Description: This package provides an efficient procedure for fitting the entire solution path for high-dimensional regularized generalized linear models with interactions effects under the strong heredity constraint.
License: GPL-2
Packaged: 2014-12-30 18:59:28 UTC; fy2158
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-31 01:11:46

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New package spMC with initial version 0.3.6
Package: spMC
Type: Package
Title: Continuous-Lag Spatial Markov Chains
Version: 0.3.6
Date: 2014-12-30
Author: Luca Sartore
Maintainer: Luca Sartore
Description: A set of functions is provided for 1) the stratum lengths analysis along a chosen direction, 2) fast estimation of continuous lag spatial Markov chains model parameters and probability computing (also for large data sets), 3) transition probability maps and transiograms drawing, 4) simulation methods for categorical random fields.
Depends: R (>= 3.0.0), base, methods, datasets, utils, grDevices, graphics, stats
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-12-30 14:55:40 UTC; root
NeedsCompilation: yes
X-CRAN-Comment: Archived on 2014-12-24 as invalid OpenMP code was not corrected.
Repository: CRAN
Date/Publication: 2014-12-31 00:09:47

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New package MVar.pt with initial version 1.0
Package: MVar.pt
Type: Package
Language: pt_BR
Title: Analise Multivariada (Brazilian Portuguese)
Version: 1.0
Date: 2014-11-25
Author: Paulo Cesar Ossani Marcelo Angelo Cirillo
Maintainer: Paulo Cesar Ossani
Description: Pacote para Analise Multivariada, que possui funcoes que executam Analise de Correspondencia Simples (CA) e Multipla (MCA), Analise de Componentes Principais (PCA), Analise de Multiplos Fatores (MFA) para dados Quantitativos, Qualitativos, Frequencia (MFACT) e dados Mistos. Tambem possuim outras funcoes uteis para a Analise Multivariada.
License: GPL-2
Packaged: 2014-12-29 13:14:07 UTC; Pc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-30 07:49:05

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Mon, 29 Dec 2014

New package metabolomics with initial version 0.1.4
Package: metabolomics
Type: Package
Title: Analysis of Metabolomics Data
Version: 0.1.4
Date: 2014-12-27
Author: Alysha M De Livera and Jairus B Bowne
Maintainer: Alysha M De Livera
Description: A collection of functions to aid in the statistical analysis of metabolomic data
License: GPL-2 | GPL-3
LazyLoad: yes
Depends: limma, crmn, gplots, R (>= 3.1.0)
Packaged: 2014-12-29 18:19:26 UTC; alyshad
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-29 19:25:29

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New package forestplot with initial version 1.0
Package: forestplot
Version: 1.0
Date: 2014-12-29
Title: Advanced Forest Plot Using 'grid' Graphics
Authors@R: c(person(given = "Max", family = "Gordon", role = c("aut", "cre"), email = "max@gforge.se"), person(given = "Thomas", family = "Lumley", role = c("aut", "ctb")))
Description: The plot allows for multiple confidence intervals per row, custom fonts for each text element, custom confidence intervals, text mixed with expressions, and more. The aim is to extend the use of forest plots beyond meta-analyses. This is a more general version of the original 'rmeta' package's forestplot function and relies heavily on the 'grid' package.
License: GPL-2
URL: http://gforge.se/packages/
BugReports: https://github.com/gforge/forestplot/issues
Biarch: yes
Depends: grid
Suggests: testthat, knitr
Encoding: UTF-8
NeedsCompilation: no
VignetteBuilder: knitr
Packaged: 2014-12-29 18:28:15 UTC; Max
Author: Max Gordon [aut, cre], Thomas Lumley [aut, ctb]
Maintainer: Max Gordon
Repository: CRAN
Date/Publication: 2014-12-30 00:24:56

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