Wed, 01 Sep 2010
New package longpower with initial version 1.0-1
Package: longpower
Type: Package
Title: Sample size calculations for longitudinal data
Version: 1.0-1
Date: 2010-08-23
Author: Michael C. Donohue, Anthony C. Gamst, Steven D. Edland
Maintainer: Michael C. Donohue
Description: The longpower package contains functions for computing
power and sample size for linear models of longitudinal data
based on the formula due to Liu and Liang (1997) and Diggle et
al (2002). Either formula is expressed in terms of marginal
model or Generalized Estimating Equations (GEE) parameters.
This package contains functions which translate pilot mixed
effect model parameters (e.g. random intercept and/or slope)
into marginal model parameters so that the formulas of Diggle
et al or Liu and Liang formula can be applied to produce sample
size calculations for two sample longitudinal designs assuming
known variance.
License: GPL (>= 2)
Depends: Matrix, lme4, methods
LazyLoad: yes
URL: http://math.ucsd.edu/~mdonohue
Packaged: 2010-09-01 18:47:57 UTC; mdonohue
Repository: CRAN
Date/Publication: 2010-09-01 20:05:12
More information about longpower at CRAN
Path: /cran/new | permanent link
New package clustsig with initial version 1.0
Package: clustsig
Version: 1.0
Date: 2010-09-01
Title: Significant Cluster Analysis
Author: Douglas Whitaker
and Mary Christman
Maintainer: Douglas Whitaker
Depends: R (>= 2.10.0)
Description: A complimentary package for use with hclust; simprof tests
to see which (if any) clusters are statistically different. The
null hypothesis is that there is no a priori group structure.
See Clarke, K.R., Somerfield, P.J., and Gorley R.N. 2008.
Testing of null hypothesis in exploratory community analyses:
similarity profiles and biota-environment linkage. J. Exp. Mar.
Biol. Ecol. 366, 56-69.
License: GPL (>= 2)
URL: http://www.stat.ufl.edu/~whitaker/clustsig/
Packaged: 2010-09-01 18:00:46 UTC; douglas
Repository: CRAN
Date/Publication: 2010-09-01 18:19:49
More information about clustsig at CRAN
Path: /cran/new | permanent link
New package imguR with initial version 0.1.2
Package: imguR
Type: Package
Title: What the package does (short line)
Version: 0.1.2
Date: 2010-08-31
Author: Aaron Statham
Maintainer: Aaron Statham
Depends: XML, RCurl
Description: A package to share plots using the image hosting service
imgur.com
License: GPL-3
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: imgur
Repository/R-Forge/Revision: 5
Date/Publication: 2010-09-01 06:44:38
Packaged: 2010-08-31 20:47:43 UTC; rforge
More information about imguR at CRAN
Path: /cran/new | permanent link
Tue, 31 Aug 2010
New package costat with initial version 1.1-1
Package: costat
Version: 1.1-1
Date: 10/6/2008
Title: Time series costationarity determination and tests of
stationarity.
Author: Guy Nason and Alessandro Cardinali
Maintainer: Guy Nason
Depends: R (>= 2.0), wavethresh (>= 4.5)
Description: Contains functions that can determine whether a time
series is second-order stationary or not (and hence evidence
for locally stationarity). Given two non-stationary series
(i.e. locally stationary series) this package can then discover
time-varying linear combinations that are second-order
stationary.
License: GPL-2
Packaged: 2010-08-31 16:12:50 UTC; magpn3
Repository: CRAN
Date/Publication: 2010-08-31 16:30:27
More information about costat at CRAN
Path: /cran/new | permanent link
New package CFL with initial version 0.1
Package: CFL
Type: Package
Title: Compensatory Fuzzy Logic
Version: 0.1
Date: 2010-08-17
Author: Pablo Michel Marin Ortega, Kornelius Rohmeyer
Maintainer: Pablo Michel Marin Ortega
Description: The main results on this project are: a package to analyze
the data based on compensatory fuzzy logic algorithms and a
reasoner for the compensatory fuzzy logic.
License: Unlimited
LazyLoad: yes
Suggests: RUnit
Packaged: 2010-08-31 09:41:16 UTC; pablo
Repository: CRAN
Date/Publication: 2010-08-31 16:02:56
More information about CFL at CRAN
Path: /cran/new | permanent link
New package emg with initial version 1.0.1
Package: emg
Type: Package
Title: Exponentially Modified Gaussian (EMG) Distribution
Version: 1.0.1
Date: 2010-08-26
Author: Shawn Garbett
Maintainer: Shawn Garbett
Depends: R (>= 1.8.0), stats, stats4
Description: Provides basic distribution functions for a mixture model
of a gaussian and exponential distribution.
License: GPL-2
LazyLoad: yes
Packaged: Mon Aug 30 08:18:45 2010; garbetsp
Repository: CRAN
Date/Publication: 2010-08-31 05:56:41
More information about emg at CRAN
Path: /cran/new | permanent link
Mon, 30 Aug 2010
Sun, 29 Aug 2010
New package ipdmeta with initial version 1.0
Package: ipdmeta
Type: Package
Title: Mixed models for complete and partial IPD survival meta-analysis
Version: 1.0
Date: 2010-08-24
Author: S. Kovalchik
Maintainer: S. Kovalchik
Depends: survival, coxme, Matrix, phmm, metafor
Description: Mixed effects IPD meta-analysis, mixed data meta-analysis
with patient level data and mulivariate survival estimates for
aggregate studies
License: GPL-2
LazyLoad: yes
Packaged: 2010-08-28 07:53:45 UTC; skoval
Repository: CRAN
Date/Publication: 2010-08-29 07:13:12
More information about ipdmeta at CRAN
Path: /cran/new | permanent link
Sat, 28 Aug 2010
New package RcmdrPlugin.TextMining with initial version 0.1-0
Package: RcmdrPlugin.TextMining
Type: Package
Title: Rcommander plugin for "tm" package
Version: 0.1-0
Author: Dzemil Lusija
Maintainer: Dzemil Lusija
Depends: R (>= 2.11.1), tcltk, tm (>= 0.5-3), XML (>= 3.1-0), Snowball
(>= 0.0-7),Rgraphviz (>= 1.26.0),proxy (>= 0.4-6), Rcmdr (>=
1.5-6)
Description: WARNING: This package is currently in beta status! This
package provide GUI for demonstration of text mining concepts
and "tm" package. It is implemented as a plugin to the
R-Commander, which is based on tcl/tk. This set of dialogs can
be accessed through the menu TextMining that is added to the
R-Commander menus.
License: Artistic-2.0
Date: 2010-01-01
Packaged: 2010-08-27 21:39:27 UTC; deimosX
Repository: CRAN
Date/Publication: 2010-08-28 06:19:40
More information about RcmdrPlugin.TextMining at CRAN
Path: /cran/new | permanent link
Fri, 27 Aug 2010
New package mpt with initial version 0.1-0
Package: mpt
Version: 0.1-0
Date: 2010-08-27
Title: Multinomial Processing Tree (MPT) Models
Author: Florian Wickelmaier
Maintainer: Florian Wickelmaier
Description: Fitting and testing multinomial processing tree models, a
class of statistical models for categorical data that involve
latent parameters. These parameters are often interpreted as
psychological processing variables (Batchelder & Riefer, 1999;
Erdfelder et al., 2009; Riefer & Batchelder, 1988).
License: GPL (>= 2)
URL: http://www.r-project.org,
http://homepages.uni-tuebingen.de/florian.wickelmaier
Packaged: 2010-08-27 10:47:07 UTC; siifw01
Repository: CRAN
Date/Publication: 2010-08-27 13:31:12
More information about mpt at CRAN
Path: /cran/new | permanent link
New package schwartz97 with initial version 0.0.1
Package: schwartz97
Type: Package
Version: 0.0.1
Date: 2009-06-29
Title: A package on the Schwartz two-factor commodity model
Author: Philipp Erb, Juri Hinz, David Luethi, Simon Otziger
Maintainer: David Luethi
LazyLoad: yes
LazyData: no
Depends: R(>= 2.8), FKF, mvtnorm, methods
Description: This package provides detailed functionality for working
with the Schwartz 1997 two-factor commodity model. Essentially,
it contains pricing formulas for futures and European options
and the standard d/p/q/r functions for the distribution of the
state variables and futures prices. In addition, the a
parameter estimation procedure is contained in the package
together with many utilities as filtering and plotting
functionality.
License: GPL (>= 2)
Encoding: latin1
Packaged: 2010-08-27 07:34:15 UTC; otis
Repository: CRAN
Date/Publication: 2010-08-27 09:05:45
More information about schwartz97 at CRAN
Path: /cran/new | permanent link
New package RandForestGUI with initial version 1.0
Package: RandForestGUI
Title: RandForestGUI
Version: 1.0
Date: 2010-07-26
Author: Rory Michelland
, Genevieve
Grundmann
Maintainer: Rory Michelland
Description: A graphical user interface program to analyze microbial
profiles (taxonomic sequences, fingerprints and microarrays)
based on conditional inference random forest
Depends:
party,randomForest,RColorBrewer,tcltk,tcltk2,MASS,vegan,Hmisc,clusterSim,rpart,car,sciplot
License: GPL-2
Packaged: 2010-08-26 15:29:46 UTC; rory
Repository: CRAN
Date/Publication: 2010-08-27 06:23:37
More information about RandForestGUI at CRAN
Path: /cran/new | permanent link
Thu, 26 Aug 2010
New package SMCP with initial version 1.1.1
Package: SMCP
Type: Package
Title: The fit for marglinalized linear model with SMCP penalties.
Version: 1.1.1
Date: 2010-04-28
Author: Jin (Gordon) Liu
Maintainer: Jin (Gordon) Liu
Description: A package containing functions that generate microarray
data, fit the marginalized linear model with MCP and QA
penalties and conduct cross-validation to select the tuning
parameter.
License: GPL
Packaged: 2010-08-25 16:16:29 UTC; jliu20
Repository: CRAN
Date/Publication: 2010-08-26 06:42:48
More information about SMCP at CRAN
Path: /cran/new | permanent link
New package QuACN with initial version 1.0
Package: QuACN
Type: Package
Title: What the package does (short line)
Version: 1.0
Date: 2010-05-27
Author: Laurin Mueller
Maintainer: Laurin Mueller
Description: Quantitative Analysis of Complex Networks. This package
offers a set of topological network measures to analyze complex
Networks structurally.
License: LGPL
LazyLoad: yes
Depends: graph, RBGL, igraph, combinat, Rgraphviz
Packaged: 2010-08-25 14:40:23 UTC; laurin
Repository: CRAN
Date/Publication: 2010-08-26 06:42:34
More information about QuACN at CRAN
Path: /cran/new | permanent link
Wed, 25 Aug 2010
New package ProjectTemplate with initial version 0.1-1
Package: ProjectTemplate
Type: Package
Title: Automates the creation of new R statistical analysis projects.
Version: 0.1-1
Date: 2010-08-24
Author: John Myles White
Maintainer: John Myles White
Description: The ProjectTemplate package provides a single function
create.project() that automatically builds a directory for a
new R project with a clean directory structure and useful
utility programs for automating the loading of project data.
The hope is that standardized and automated data loading,
automatic loading of best practice packages and useful nudges
towards keeping cleanly organized code will improve the quality
of R coding.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 2.7), reshape, plyr, stringr, ggplot2, testthat
Packaged: 2010-08-25 11:11:46 UTC; johnmyleswhite
Repository: CRAN
Date/Publication: 2010-08-25 12:50:31
More information about ProjectTemplate at CRAN
Path: /cran/new | permanent link
New package censReg with initial version 0.5-2
Package: censReg
Version: 0.5-2
Date: 2010/08/25
Title: Censored Regression (Tobit) Models
Author: Arne Henningsen
Maintainer: Arne Henningsen
Depends: R (>= 2.4.0), maxLik (>= 0.7-3)
Imports: glmmML (>= 0.81-6)
Suggests: plm, AER
Description: Estimation of censored regression (Tobit) models with
cross-section and panel data
License: GPL (>= 2)
URL: http://CRAN.R-project.org, http://www.sampleSelection.org
Packaged: 2010-08-25 09:47:22 UTC; suapm095
Repository: CRAN
Date/Publication: 2010-08-25 10:07:34
More information about censReg at CRAN
Path: /cran/new | permanent link
New package orderbook with initial version 1.0
Package: orderbook
Type: Package
Title: Orderbook visualization/Charting software
Depends: R (>= 2.11.0), methods, graphics, lattice, hash, grid
Version: 1.0
Date: 2010-01-15
Author: Andrew Liu, Khanh Nguyen, Dave Kane
Maintainer: Andrew Liu
Description: Functions for visualizing and retrieving data for the
state of an orderbook at a particular period in time.
License: GPL (>= 2)
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: limitob
Repository/R-Forge/Revision: 200
Date/Publication: 2010-08-25 09:37:41
Packaged: 2010-08-23 20:51:46 UTC; rforge
More information about orderbook at CRAN
Path: /cran/new | permanent link
New package ares with initial version 0.7.0
Package: ares
Version: 0.7.0
Date: 2010-08-24
Author: Washington Junger
and Antonio Ponce de
Leon
Maintainer: Washington Junger
Depends: R (>= 2.11.0),utils,stats,foreign,gam,splines,gplots
Title: Environment air pollution epidemiology: a library for time
series analysis
Description: A toolbox for time series analyses using generalized
additive models. This library includes routines for model
estimation and diagnostics. Polynomial distributed lag models
are also implemented.
License: GPL (>= 2)
Packaged: 2010-08-25 04:09:15 UTC; wjunger
Repository: CRAN
Date/Publication: 2010-08-25 09:37:21
More information about ares at CRAN
Path: /cran/new | permanent link
New package ecoreg with initial version 0.2
Package: ecoreg
Title: Ecological regression using aggregate and individual data
Version: 0.2
Date: 2010-08-24
Author: Christopher Jackson
Description: Estimating individual-level covariate-outcome associations
using aggregate data ("ecological inference") or a combination
of aggregate and individual-level data ("hierarchical related
regression").
Maintainer: Christopher Jackson
License: GPL (>= 2)
Packaged: 2010-08-24 16:13:08 UTC; chris
Repository: CRAN
Date/Publication: 2010-08-25 09:37:28
More information about ecoreg at CRAN
Path: /cran/new | permanent link
Sun, 22 Aug 2010
New package TRIANGG with initial version 1.0
Package: TRIANGG
Type: Package
Title: General discrete triangular distribution
Version: 1.0
Date: 2010-08-18
Author: Tristan Senga Kiess\'{e}, Francial G. Libengu\'e, Silvio S.
Zocchi, C\'{e}lestin C. Kokonendji
Maintainer: Tristan Senga Kiess\'{e}
Description: This is a package for general discrete triangular
distributions which is an extension of the symmetric discrete
triangular distributions
License: GPL-2
LazyLoad: yes
Packaged: Sat Aug 21 13:01:44 2010; root
Repository: CRAN
Date/Publication: 2010-08-22 07:57:44
More information about TRIANGG at CRAN
Path: /cran/new | permanent link
Fri, 20 Aug 2010
New package fmsb with initial version 0.11
Package: fmsb
Version: 0.11
Date: 2010/5/13
Title: Functions for medical statistics book with some demographic data
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
Depends: R (>= 2.2.0)
Description: Several utility functions for the book entitled "Practices
of Medical and Health Data Analysis using R" (Pearson Education
Japan, 2007)
License: GPL (>= 2)
URL: http://phi.med.gunma-u.ac.jp/msb/
Packaged: 2010-05-13 02:13:57 UTC; nminato
Repository: CRAN
Date/Publication: 2010-08-20 20:29:48
More information about fmsb at CRAN
Path: /cran/new | permanent link
New package mutossGUI with initial version 0.1-2
Package: mutossGUI
Version: 0.1-2
Date: 2010-08-16
Title: A graphical user interface for the MuToss Project
Author: Kornelius Rohmeyer
Maintainer: Kornelius Rohmeyer
Description: A graphical user interface for the MuToss Project
Depends: R (>= 2.8.0), rJava (>= 0.8-0), JavaGD (>= 0.5-2), plotrix,
mutoss (>= 0.1-0), multcomp
SystemRequirements: Java (>= 5.0)
License: GPL
Packaged: 2010-08-19 20:22:56 UTC; kornel
Repository: CRAN
Date/Publication: 2010-08-20 04:39:07
More information about mutossGUI at CRAN
Path: /cran/new | permanent link
Thu, 19 Aug 2010
New package DCGL with initial version 1.0
Package: DCGL
Type: Package
Title: Differential Coexpression Analysis of Gene Expression Microarray
Data
Version: 1.0
Date: 2010-08-18
Author: Bao-Hong Liu, Hui Yu
Maintainer: Bao-Hong Liu
Description: Functions for basic differential coexpression analyses:
gene filtering, link filtering, DCG (Differentially-Coexpressed
Gene) identification and DCL (Differentially-Coexpressed Links)
identification.Two algorithms,named DCP and DCe, are provided
for DCG-identification or DCG and DCL-identification.
Depends: R (>= 2.8.1), igraph
Imports: igraph
License: GPL (> 2)
LazyLoad: yes
Packaged: 2010-08-19 02:35:42 UTC; Bao-Hong Liu
Repository: CRAN
Date/Publication: 2010-08-19 05:39:47
More information about DCGL at CRAN
Path: /cran/new | permanent link
Wed, 18 Aug 2010
New package refund with initial version 0.1-0
Package: refund
Type: Package
Title: Regression with Functional Data
Version: 0.1-0
Date: 2010-08-16
Author: Philip Reiss
Maintainer: Lei Huang
Depends: R (>= 2.9.0), mgcv, fda, pls
Description: Functions for regression with functional data. The
principal methods currently implemented are (1)
functional-response/scalar-predictor regression by penalized
OLS or GLS; and (2) functional principal component regression
for scalar responses and functional predictors.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-08-18 15:09:59 UTC; huangl08
Repository: CRAN
Date/Publication: 2010-08-18 18:21:25
More information about refund at CRAN
Path: /cran/new | permanent link
New package soiltexture with initial version 1.0
Package: soiltexture
Version: 1.0
Date: 2010-08-16
Title: Functions for soil texture plot, classification and
transformation
Author: Julien MOEYS
Maintainer: Julien MOEYS
Depends: R (>= 2.11.1), sp, MASS, drc
Suggests: plotrix
Description: "The Soil Texture Wizard" is a set of R functions designed
to produce texture triangles (also called texture plots,
texture diagrams, texture ternary plots), classify and
transform soil textures data. These functions virtually allows
to plot any soil texture triangle / classification into any
triangle geometry (isosceles, right-angled triangles, etc.).
This set of function is expected to be useful to people using
soil textures data from different soil texture classification
or different particle size systems. Several texture triangles
are predefined: USDA; FAO (which is also the triangle for the
soil map of Europe); Aisne (France); GEPPA (France); German
triangle (Bodenkundliche Kartieranleitung 1994); Soil Survey of
England and Wales (UK); Australian triangle; Belgian triangle;
Canadian triangle; ISSS triangle; Romanian traingle. The Soil
Texture Wizard is initially develloped from the functions
'soil.texture()' from the package 'plotrix' by Jim Lemon et al.
License: GPL (>= 3)
URL: http://soiltexture.r-forge.r-project.org/
Repository: CRAN
Repository/R-Forge/Project: soiltexture
Repository/R-Forge/Revision: 35
Date/Publication: 2010-08-18 14:35:47
Packaged: 2010-08-16 20:58:14 UTC; rforge
More information about soiltexture at CRAN
Path: /cran/new | permanent link
New package mutoss with initial version 0.1-1
Package: mutoss
Type: Package
Title: GUI and wrappers for multiple testing procedures
Version: 0.1-1
Date: 2010-08-17
Author: MuToss Coding Team (Berlin 2010), Gilles Blanchard, Thorsten
Dickhaus, Niklas Hack, Frank Konietschke, Kornelius Rohmeyer,
Jonathan Rosenblatt, Marsel Scheer, Wiebke Werft
Maintainer: Kornelius Rohmeyer
Description: The Mutoss package and accompanying mutossGUI package are
designed to ease the application and comparison of multiple
hypothesis testing procedures.
Depends: R (>= 2.8.0), multcomp (>= 1.1-0), methods, plotrix
Suggests: fdrtool, multtest (>= 2.2.0), mvtnorm, qvalue
License: GPL
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: mutoss
Repository/R-Forge/Revision: 64
Date/Publication: 2010-08-18 14:35:29
Packaged: 2010-08-17 20:54:11 UTC; rforge
More information about mutoss at CRAN
Path: /cran/new | permanent link
Tue, 17 Aug 2010
New package isva with initial version 1.0
Package: isva
Type: Package
Title: Independent Surrogate Variable Analysis
Version: 1.0
Date: 2010-08-14
Author: Andrew E Teschendorff
Maintainer:
Depends: qvalue, fastICA
Description: Independent Surrogate Variable Analysis is a general
algorithm for feature selection in the presence of potentially
confounding factors.
License: GPL-2
LazyLoad: yes
Packaged: Mon Aug 16 22:56:38 2010; aet21
Repository: CRAN
Date/Publication: 2010-08-17 05:06:03
More information about isva at CRAN
Path: /cran/new | permanent link
New package IniStatR with initial version 1.0.0
Package: IniStatR
Version: 1.0.0
Date: 2010-08-17
Depends: R (>= 2.8.0)
Imports:
Enhances:
Suggests:
Title: Initiation à la Statistique avec R
Author: Frederic Bertrand
, Myriam
Maumy-Bertrand .
Maintainer: Frederic Bertrand
LazyLoad: yes
LazyData: yes
Description: This packages provides datasets for the book "Initiation à
la Statistique avec R", Dunod, 2010.
License: GPL-3
Encoding: latin1
URL: http://www-irma.u-strasbg.fr/~fbertran/
Classification/MSC:
Packaged: 2010-08-17 01:11:52 UTC; Bertrand
Repository: CRAN
Date/Publication: 2010-08-17 05:05:34
More information about IniStatR at CRAN
Path: /cran/new | permanent link
Mon, 16 Aug 2010
New package TunePareto with initial version 1.0
Package: TunePareto
Type: Package
Title: Multi-objective parameter tuning for classifiers
Version: 1.0
Date: 2010-07-13
Author: Christoph Muessel, Hans Kestler
Maintainer: Hans Kestler
Description: Generic methods for parameter tuning of classification
algorithms using multiple scoring functions
Suggests: snowfall, class, tree, e1071, randomForest, igraph
License: Artistic-2.0
LazyLoad: yes
Packaged: 2010-08-13 13:20:38 UTC; muessel
Repository: CRAN
Date/Publication: 2010-08-16 13:46:23
More information about TunePareto at CRAN
Path: /cran/new | permanent link
Sun, 15 Aug 2010
New package lubridate with initial version 0.1
Package: lubridate
Type: Package
Title: Make dealing with dates a little easier
Version: 0.1
Author: Hadley Wickham
, Garrett Grolemund
Maintainer: Hadley Wickham
Description: Lubridate makes it easier to work with dates and times by
providing functions to identify and parse date-time data,
extract and modify components of a date-time (years, months,
days, hours, minutes, and seconds), perform accurate math on
date-times, handle time zones and Daylight Savings Time.
Lubridate has a consistent, memorable syntax, that makes
working with dates fun instead of frustrating.
Depends: R (>= 2.8), plyr, stringr
Enhances: chron, timeDate, zoo, xts, its, tis, timeSeries, fts, tseries
Suggests: testthat
License: GPL
LazyData: true
Collate: 'accessors-day.r' 'accessors-hour.r' 'accessors-minute.r'
'accessors-misc.r' 'accessors-month.r' 'accessors-second.r'
'accessors-tz.r' 'accessors-week.r' 'accessors-year.r'
'coercion.r' 'durations.r' 'epochs.r' 'intervals.r'
'ops.durations.r' 'parse.r' 'periods.r' 'pretty.r' 'round.r'
'util.r' 'zzz.r'
Packaged: 2010-08-14 17:18:06 UTC; hadley
Repository: CRAN
Date/Publication: 2010-08-15 04:46:38
More information about lubridate at CRAN
Path: /cran/new | permanent link
New package FitARMA with initial version 1.3
Package: FitARMA
Title: FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
Version: 1.3
Date: 2010-08-14
Author: A.I. McLeod
Maintainer: A.I. McLeod
Depends: R (>= 2.0.0), FitAR
Description: Implements fast maximum likelihood algorithm for fitting
ARMA time series. Uses S3 methods print, summary, fitted,
residuals. Fast exact Gaussian ARMA simulation.
Classification/ACM: G.3, G.4, I.5.1
Classification/MSC: 62M10, 91B84
License: GPL (>= 2)
URL: http://www.stats.uwo.ca/faculty/aim
Packaged: 2010-08-14 22:34:51 UTC; aim
Repository: CRAN
Date/Publication: 2010-08-15 04:46:28
More information about FitARMA at CRAN
Path: /cran/new | permanent link
Sat, 14 Aug 2010
Fri, 13 Aug 2010
New package DeducerExtras with initial version 1.0
Package: DeducerExtras
Type: Package
Title: Additional dialogs and functions for Deducer
Version: 1.0
Date: 2010-08-10
Author: Ian Fellows
Maintainer: Ian Fellows
Description: Added functionality for Deducer. This package includes
additional dialogs for calculating distribution function
values, cluster analysis, factor analysis and more.
Depends: Deducer
License: GPL-2
LazyLoad: yes
Packaged: 2010-08-13 04:25:30 UTC; Ian
Repository: CRAN
Date/Publication: 2010-08-13 05:04:42
More information about DeducerExtras at CRAN
Path: /cran/new | permanent link
Thu, 12 Aug 2010
New package demography with initial version 1.0
Package: demography
Version: 1.0
Date: 2010-08-12
Title: Forecasting mortality, fertility, migration and population data
Author: Rob J Hyndman, Heather Booth, Leonie Tickle, John Maindonald
Maintainer: Rob J Hyndman
Depends: R (>= 2.6.0), forecast (>= 1.0), rainbow, ftsa
Suggests: mgcv, cobs, strucchange, RCurl
LazyData: yes
LazyLoad: yes
Description: Functions for demographic analysis including lifetable
calculations; Lee-Carter modelling; functional data analysis of
mortality rates, fertility rates, net migration numbers; and
stochastic population forecasting.
License: GPL (>= 2)
URL: http://robjhyndman.com/software/demography
Packaged: 2010-08-12 09:13:38 UTC; hyndman
Repository: CRAN
Date/Publication: 2010-08-12 11:22:09
More information about demography at CRAN
Path: /cran/new | permanent link
New package charlson with initial version 1.0
Package: charlson
Type: Package
Title: Converts listwise icd9 data into comorbidity count and Charlson
Index
Version: 1.0
Date: 2010-05-04
Author: Vanessa Cox
Depends: R (>= 2.8), plyr,reshape
Maintainer: Vanessa Cox
Description: Input patient id and icd9 codes and obtain summary index
License: Unlimited
LazyLoad: yes
Packaged: 2010-05-07 00:44:18 UTC; vanessa
Repository: CRAN
Date/Publication: 2010-08-12 04:59:20
More information about charlson at CRAN
Path: /cran/new | permanent link
Wed, 11 Aug 2010
New package normwhn.test with initial version 1.0
Package: normwhn.test
Type: Package
Title: Normality and White Noise Testing
Version: 1.0
Date: 2010-08-02
Author: Peter Wickham
Maintainer: Peter Wickham
Description: Includes Omnibus Univariate and Multivariate Normality
Tests (See Doornik and Hansen (1994)). One variation allows for
the possibility of weak dependence rather than independence in
the variable(s). Also included is an univariate white noise
test where the null hypothesis is "white noise" rather than
strict "white noise".
License: GPL-3
Packaged: 2010-08-10 23:08:55 UTC; peter
Repository: CRAN
Date/Publication: 2010-08-11 19:32:45
More information about normwhn.test at CRAN
Path: /cran/new | permanent link
Tue, 10 Aug 2010
New package phitest with initial version 1.0-0
Package: phitest
Title: Nonparametric goodness-of-fit methods based on phi-divergences
Version: 1.0-0
Author: Leah R. Jager
Description: This package perform a generalized goodness-of-fit test
based on phi-divergences. This test works by considering the
maximum 'distance' between the hypothesized distribution
function and the empirical distribution function, where the
measure of 'distance' is based on a phi-divergence. This
generalized family of tests is indexed by a real-valued
parameter, s, wich can take values in [-1,2]. Special cases of
this family include the Berk-Jones statistic (s=0), the
supremum form of the Anderson-Darling statistic (s=2), and the
statistic of Jaescke and Eicker (s=-1). See the references for
the phi.test() function for references regarding these special
cases. In addition to performing a statistical test, this
package will also invert the test statistic to form and plot
confidence bands for the true distribution function for sample
sizes up to 10,000.
Maintainer: Leah R. Jager
Depends: R (>= 2.7.0)
License: GPL
Packaged: Tue Aug 10 13:14:10 2010; jager
Repository: CRAN
Date/Publication: 2010-08-10 19:01:23
More information about phitest at CRAN
Path: /cran/new | permanent link
New package pathmox with initial version 0.1
Package: pathmox
Type: Package
Title: Segmentation Trees in Partial Least Squares Path Modeling
Version: 0.1
Date: 2010-08-09
Author: Gaston Sanchez
, and Tomas Aluja
Maintainer: Gaston Sanchez
Depends: plspm
Description: companion package of plspm with approaches of segmentation
trees in PLS Path Modeling.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-08-09 20:36:36 UTC; Gaston
Repository: CRAN
Date/Publication: 2010-08-10 14:17:07
More information about pathmox at CRAN
Path: /cran/new | permanent link
New package futile.paradigm with initial version 1.0.0
Package: futile.paradigm
Type: Package
Title: A framework for working in a functional programming paradigm in
R
Version: 1.0.0
Date: 2010-08-09
Depends: futile.options
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe
Description: Provides dispatching implementations suitable for
functional programming paradigms. The framework provides a
mechanism for attaching guards to functions similar to Erlang,
while also providing the safety of assertions reminiscent of
Eiffel.
License: LGPL-3
LazyLoad: yes
Packaged: Mon Aug 9 19:49:55 2010; brian
Repository: CRAN
Date/Publication: 2010-08-10 14:16:52
More information about futile.paradigm at CRAN
Path: /cran/new | permanent link
Mon, 09 Aug 2010
New package magma with initial version 0.2.1-1
Package: magma
Title: Matrix Algebra on GPU and Multicore Arcitectures
Version: 0.2.1-1
Date: 2010-08-09
Author: Brian J Smith
Maintainer: Brian J Smith
Depends: R (>= 2.10.0), methods
SystemRequirements: nVidia CUDA toolkit (>= release 3.0), LAPACK shared
library, MAGMA shared libraries (== release 0.2)
Description: Magma matrix classes and methods for parallel processing
of matrix algebra operations. Operations are performed with
algorithms developed by the MAGMA research project. MAGMA aims
to acheive the fastest possible linear algebra libraries on
hybrid mutlicore CPU and GPU architectures by exploiting their
massive parallelism and minimizeing communication latencies.
URL: http://icl.cs.utk.edu/magma
License: GPL (>= 2)
Packaged: 2010-08-09 14:22:20 UTC; bjsmith
Repository: CRAN
Date/Publication: 2010-08-09 14:49:28
More information about magma at CRAN
Path: /cran/new | permanent link
Sun, 08 Aug 2010
New package care with initial version 1.0.0
Package: care
Version: 1.0.0
Date: 2010-08-08
Title: CAR Estimation, Variable Selection, and Regression
Author: Verena Zuber and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
Depends: R (>= 2.7.0), corpcor (>= 1.5.7)
Suggests:
Description: The "care" package implements the CAR regression approach
described in Zuber and Strimmer (2010). CAR scores measure the
correlations between the response and the
Mahalanobis-decorrelated predictors. The squared CAR score is
a natural measure of variable importance and provides a
canonical ordering of variables - see
http://arxiv.org/abs/1007.5516 for details. This package
provides functions for estimating CAR scores, for variable
selection using CAR scores, and for estimating corresponding
regression coefficients. Both shrinkage as well as empirical
estimators are available.
License: GPL (>= 3)
URL: http://strimmerlab.org/software/care/
Packaged: Sun Aug 8 18:51:46 2010; strimmer
Repository: CRAN
Date/Publication: 2010-08-08 18:54:32
More information about care at CRAN
Path: /cran/new | permanent link
New package SQUAREM with initial version 2010.8-1
Package: SQUAREM
Title: Squared extrapolation methods for accelerating fixed-point
iterations
Description: Algorithms for accelerating the convergence of slow,
monotone sequences from smooth, contraction mapping such as the
EM algorithm. It can be used to accelerate any smooth, linearly
convergent acceleration scheme. A tutorial style introduction
to this package is available in a vignette on the CRAN download
page or, when the package is loaded in an R session, with
vignette("SQUAREM").
Depends: R (>= 2.10.0)
Suggests: setRNG
Version: 2010.8-1
LazyLoad: yes
License: GPL (>= 2)
Author: Ravi Varadhan
Maintainer: Ravi Varadhan and Paul Gilbert
URL:
http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html
Packaged: 2010-08-08 17:39:18 UTC; varadhan
Repository: CRAN
Date/Publication: 2010-08-08 18:54:28
More information about SQUAREM at CRAN
Path: /cran/new | permanent link
Fri, 06 Aug 2010
New package MSToolkit with initial version 2.0
Package: MSToolkit
Type: Package
Title: The MSToolkit library for clinical trial design
Version: 2.0
Date: 2009-06-29
Author: Mango Solutions & Pfizer
Maintainer: MSToolkit
Description: MSToolkit library for evaluating clinical trial design and
analysis operating characteristics through simulation.
Depends: R (>= 2.3.1), MASS
Suggests: RUnit, Rlsf
License: GPL
Repository: CRAN
Repository/R-Forge/Project: mstoolkit
Repository/R-Forge/Revision: 29
Date/Publication: 2010-08-06 09:29:26
Packaged: 2010-08-04 20:41:50 UTC; rforge
More information about MSToolkit at CRAN
Path: /cran/new | permanent link
Thu, 05 Aug 2010
New package MatrixModels with initial version 0.1-1
Package: MatrixModels
Version: 0.1-1
Date: 2010-08-01
Title: Modelling with Sparse And Dense Matrices
Author: Douglas Bates
and Martin Maechler
Maintainer: Doug and Martin
Description: Modelling with sparse and dense 'Matrix' matrices, using
modular prediction and response module classes.
Depends: R (>= 2.10.1), stats, utils, methods, Matrix (>= 0.999375-43)
notyetImports: stats4
LazyLoad: yes
Encoding: UTF-8
License: GPL (>= 2)
URL: http://Matrix.R-forge.R-project.org/
Packaged: 2010-08-05 20:31:28 UTC; hornik
Repository: CRAN
Date/Publication: 2010-08-05 20:52:15
More information about MatrixModels at CRAN
Path: /cran/new | permanent link
New package cumSeg with initial version 1.0
Package: cumSeg
Type: Package
Title: Change point detection in genomic sequences
Version: 1.0
Date: 2010-08-03
Author: Vito M.R. Muggeo
Maintainer: Vito M.R. Muggeo
Description: Estimation of number and location of change points in
mean-shift (piecewise constant) models. Particularly useful to
model genomic sequences of continuous measurements.
Depends: lars
License: GPL
LazyLoad: no
Packaged: 2010-08-05 09:48:48 UTC; PcVito
Repository: CRAN
Date/Publication: 2010-08-05 10:45:47
More information about cumSeg at CRAN
Path: /cran/new | permanent link
New package mhurdle with initial version 0.1-0
Package: mhurdle
Version: 0.1-0
Date: 2010-05-03
Title: Estimation of models with limited dependent variables
Author: Fabrizio Carlevaro
, Yves
Croissant , Stephane
Hoareau
Maintainer: Yves Croissant
Depends: R (>= 1.8.0), Formula, truncreg, maxLik
Suggests:
Description: Estimation of models with zero left-censored variables.
Null values may be caused by a selection process, insufficient
ressource or infrequency of purchase.
License: GPL (>= 2)
URL: http://www.r-project.org
Repository: CRAN
Repository/R-Forge/Project: mhurdle
Repository/R-Forge/Revision: 7
Date/Publication: 2010-08-05 06:54:56
Packaged: 2010-08-04 21:05:49 UTC; rforge
More information about mhurdle at CRAN
Path: /cran/new | permanent link
Tue, 03 Aug 2010
New package GWASExactHW with initial version 1.0
Package: GWASExactHW
Type: Package
Title: Exact Hardy-Weinburg testing for Genome Wide Association Studies
Version: 1.0
Date: 2009-08-24
Author: Ian Painter, GENEVA project, University of Washington
Maintainer: Ian Painter
Description: This package contains a function to do exact
Hardy-Weinburg testing (using Fisher's test) for SNP genotypes
as typically obtained in a Genome Wide Association Study
(GWAS).
License: GPL-3
LazyLoad: yes
Packaged: 2010-07-29 19:22:12 UTC; Ian
Repository: CRAN
Date/Publication: 2010-08-03 05:50:12
More information about GWASExactHW at CRAN
Path: /cran/new | permanent link
Mon, 02 Aug 2010
New package optimx with initial version 0.84
Package: optimx
Version: 0.84
Date: 2010-07-30
Title: A replacement and extension of the optim() function
Author: John C Nash
and Ravi Varadhan
Maintainer: John C Nash
Description: Provides a replacement and extension of the optim()
function to unify and streamline optimization capabilities in R
for smooth, possibly box constrained functions of several or
many parameters
License: GPL-2
Lazyload: Yes
Depends: numDeriv, BB, ucminf, Rcgmin, Rvmmin, minqa, setRNG
Repository: CRAN
Repository/R-Forge/Project: optimizer
Repository/R-Forge/Revision: 369
Date/Publication: 2010-08-02 05:48:18
Packaged: 2010-08-01 20:52:45 UTC; rforge
More information about optimx at CRAN
Path: /cran/new | permanent link
Sun, 01 Aug 2010
New package corrsieve with initial version 1.6-1
Package: corrsieve
Version: 1.6-1
Date: 2010/07/30
Title: CorrSieve
Author: Michael G. Campana
Maintainer: Michael G. Campana
Description: Statistical summary of Structure output.
License: GPL (>= 3)
Depends: methods
URL:
http://www.mcdonald.cam.ac.uk/projects/genetics/projects/CorrSieve/CorrSieve.htm
Cite: Campana et al. CorrSieve: software for summarising and evaluating
STRUCTURE output
BugReports:
Packaged: 2010-08-01 04:46:17 UTC; michaelcampana
Repository: CRAN
Date/Publication: 2010-08-01 09:35:29
More information about corrsieve at CRAN
Path: /cran/new | permanent link
Fri, 30 Jul 2010
New package RGtk2Extras with initial version 0.0.1
Package: RGtk2Extras
Type: Package
Title: Data frame editor and dialog making wrapper for RGtk2
Version: 0.0.1
Date: 2010-06-25
Author: Tom Taverner, with contributions from John Verzani and Iago
Conde
Maintainer: Tom Taverner
Description: Useful add-ons for RGtk2
Depends: methods, RGtk2(>= 2.12.8), gWidgets, gWidgetsRGtk2
Recommends: cairoDevice
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-30 19:27:19 UTC; d3x487
Repository: CRAN
Date/Publication: 2010-07-30 20:19:52
More information about RGtk2Extras at CRAN
Path: /cran/new | permanent link
New package rJython with initial version 0.0-2
Package: rJython
Version: 0.0-2
Date: 2010-07-19
Title: R interface to Python via Jython
Author: G. Grothendieck and Carlos J. Gil Bellosta (authors of Jython
itself are Jim Hugunin, Barry Warsaw, Samuele Pedroni, Brian
Zimmer, Frank Wierzbicki and others; Bob Ippolito is the author
of the simplejson Python module)
Maintainer: Carlos J. Gil Bellosta
Description: R interface to Python via Jython allowing R to call python
code.
SystemRequirements: Java
Depends: rJava (>= 0.8-1), rjson (>= 0.1.9)
License: GPL (>= 2)
URL: https://r-forge.r-project.org/projects/rjython/
Repository: CRAN
Repository/R-Forge/Project: rjython
Repository/R-Forge/Revision: 20
Date/Publication: 2010-07-30 13:57:59
Packaged: 2010-07-27 20:56:19 UTC; rforge
More information about rJython at CRAN
Path: /cran/new | permanent link
New package VecStatGraphs3D with initial version 1.0
Package: VecStatGraphs3D
Type: Package
Title: Vector analysis using graphical and analytical methods in 3D.
Version: 1.0
Date: 2010-07-21
Author: Juan Carlos Ruiz Cuetos, Maria Eugenia Polo Garcia, Pablo
Garcia Rodriguez
Maintainer: Juan Carlos Ruiz Cuetos
, Pablo Garcia
Rodriguez
Depends: R (>= 2.10.1), rgl, misc3d, tcltk
Description: This package performs a 3D statistical analysis, both
numerical and graphic, of a set of vectors. Since a vector has
three components (a module and two angles) vector analysis is
performed in two stages: modules are analyzed by means of
linear statistics and orientations are analyzed by spherical
statistics. Tests and spherical statistic parameters have
associated a full range of graphing: vector maps, density maps,
distribution modules and angles. The tests, spherical statistic
parameters and graphs allow us detecting another distribution
properties (I.e. anisotropy) and outliers.
License: GPL-3
URL: http://vecstat3d.mhostweb.com/
Packaged: 2010-07-30 10:58:22 UTC; Juan Carlos
Repository: CRAN
Date/Publication: 2010-07-30 11:34:36
More information about VecStatGraphs3D at CRAN
Path: /cran/new | permanent link
New package Runiversal with initial version 1.0
Package: Runiversal
Type: Package
Title: Runiversal - Package for converting R objects to Java variables
and XML.
Version: 1.0
Date: 2010-07-29
Author: Mehmet Hakan Satman
Maintainer: Mehmet Hakan Satman - http://www.mhsatman.com
Description: This package contains some functions for converting R
objects to Java style variables and XML. Generated Java code is
interpretable by dynamic Java libraries such as Beanshell.
Calling R externally and handling the Java or XML output is an
other way to call R from other languages without native
interfaces.
License: GPL
LazyLoad: yes
Packaged: 2010-07-29 19:20:48 UTC; hako
Repository: CRAN
Date/Publication: 2010-07-30 05:02:06
More information about Runiversal at CRAN
Path: /cran/new | permanent link
New package gaussDiff with initial version 1.0
Package: gaussDiff
Version: 1.0
Date: 2010-06-30
Title: Difference measures for multivariate Gaussian probability
density functions
Author: Henning Rust
Maintainer: Henning Rust
Depends: R (>= 1.8.0)
Enhanves:
Suggests:
Description: A collection difference measures for multivariate Gaussian
probability density functions, such as the Euclidian mean, the
Mahalanobis distance, the Kullback-Leibler divergence, the
J-Coefficient, the Minkowski L2-distance, the Chi-square
divergence and the Hellinger Coefficient.
License: GPL (>= 2)
URL: http://www.lsce.ipsl.fr/Pisp/64/henning.rust.html
Packaged: 2010-07-29 22:28:45 UTC; hrust
Repository: CRAN
Date/Publication: 2010-07-30 05:02:10
More information about gaussDiff at CRAN
Path: /cran/new | permanent link
Thu, 29 Jul 2010
New package pvclass with initial version 1.0
Package: pvclass
Type: Package
Title: P-values for Classification
Version: 1.0
Date: 2010-07-29
Author: Niki Zumbrunnen
, Lutz Duembgen
.
Maintainer: Niki Zumbrunnen
Depends: Matrix
Description: Computes nonparametric p-values for the potential class
memberships of new observations as well as cross-validated
p-values for the training data. The p-values are based on
permutation tests applied to an estimated Bayesian likelihood
ratio, using a plug-in statistic for the Gaussian model, 'k
nearest neighbors' or 'weighted nearest neighbors'.
Additionally, it provides graphical displays and quantitative
analyses of the p-values.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-29 14:06:28 UTC; niki
Repository: CRAN
Date/Publication: 2010-07-29 15:47:20
More information about pvclass at CRAN
Path: /cran/new | permanent link
New package rTOFsPRO with initial version 1.1
Package: rTOFsPRO
Type: Package
Title: Time-of-flight mass spectra signal processing
Version: 1.1
Date: 2010-07-12
Author: Dariya Malyarenko, Maureen Tracy and William Cooke
Maintainer: Dariya Malyarenko
Suggests: R.matlab
Description: rTOFsPRO provides functions for signal processing of the
linear TOF spectra to produce aligned peak intensity matrix
(and peak positions)
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-28 17:19:00 UTC; Maureen Tracy
Repository: CRAN
Date/Publication: 2010-07-29 09:14:26
More information about rTOFsPRO at CRAN
Path: /cran/new | permanent link
New package constrainedKriging with initial version 0.1.0
Package: constrainedKriging
Version: 0.1.0
Type: Package
Title: Constrained, covariance-matching constrained and universal point
or block kriging
Date: 2010-02-24
Author: Christoph Hofer
Maintainer: Christoph Hofer
Description: The constrainedKriging package provides functions for
efficient computations of nonlinear spatial predictions with
local change of support. The package supplies functions for
tow-dimensional spatial interpolation by constrained,
covariance-matching constrained and universal (external drift)
kriging for points or block of any shape for data with a
nonstationary mean function and an isotropic weakly stationary
variogram. The linear spatial interpolation methods,
constrained and covariance-matching constrained kriging,
provide approximately unbiased prediction for nonlinear target
values under change of support. The constrainedKriging package
extends the range of geostatistical tools available in R and
provides a veritable alternative to conditional simulation for
nonlinear spatial prediction problems with local change of
support.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Depends: R (>= 2.9.0), sp(>= 0.9-60), spatialCovariance(>= 0.6-4),
methods
Imports: gpclib(>= 1.5-1), RandomFields(>= 1.3.41)
Packaged: 2010-07-28 11:09:56 UTC; hoferc
Repository: CRAN
Date/Publication: 2010-07-29 09:13:31
More information about constrainedKriging at CRAN
Path: /cran/new | permanent link
New package dafs with initial version 1.0-34
Package: dafs
Version: 1.0-34
Date: 2010-07-29
Title: Data analysis for forensic scientists
Author: James Curran, Danny Chang
Maintainer: James Curran
Depends: s20x
Description: Data and miscellanea to support the book "Introduction to
Data analysis with R for Forensic Scientists", Curran, J.M.
2010 CRC Press ISBN: 978-1-4200-8826-7
License: GPL (>= 2)
Packaged: 2010-07-29 05:20:19 UTC; jcur002
Repository: CRAN
Date/Publication: 2010-07-29 09:13:34
More information about dafs at CRAN
Path: /cran/new | permanent link
New package compareGroups with initial version 0.1-3
Package: compareGroups
Type: Package
Title: descriptives by groups
Version: 0.1-3
Date: 2010-07-27
Depends: R (>= 2.11.0), xtable, Hmisc, gdata, tcltk, foreign
Author: Héctor Sanz, Isaac Subirana, Joan Vila
Maintainer: Isaac Subirana
Description: This package is meant to facilitate the construction of
bivariate table (descriptives of several variables between
groups) and generate reports in LaTeX or (CSV) plain text.
Also, it includes a graphical interface to build these tables
more easily.
License: GPL (>= 2)
LazyLoad: yes
Encoding: latin1
Packaged: 2010-07-29 08:54:20 UTC; instalar
Repository: CRAN
Date/Publication: 2010-07-29 09:21:17
More information about compareGroups at CRAN
Path: /cran/new | permanent link
Wed, 28 Jul 2010
New package splinesurv with initial version 0.6-13
Package: splinesurv
Version: 0.6-13
Title: Nonparametric bayesian survival analysis
Author: Emmanuel Sharef
, Robert L. Strawderman
, and David Ruppert
Maintainer: Emmanuel Sharef
Depends: R (>= 2.5.0), MASS, survival
Suggests: coda, tkrplot
Description: Utilities for nonparametric Bayesian analysis of clustered
survival data. The baseline hazard function and frailty density
are modeled using penalized B-splines. Options include adaptive
knot selection and the inclusion of a parametric component.
License: GPL (>= 2)
Repository: CRAN
Repository/R-Forge/Project: splinesurv
Repository/R-Forge/Revision: 21
Date/Publication: 2010-07-28 07:55:39
Packaged: 2010-07-27 20:58:20 UTC; rforge
More information about splinesurv at CRAN
Path: /cran/new | permanent link
Tue, 27 Jul 2010
New package sprint with initial version 0.2.0
Package: sprint
Version: 0.2.0
Date: 2010-06-12
Title: Simple Parallel R INTerface
Author: University of Edinburgh SPRINT Team
Maintainer: University of Edinburgh SPRINT Team
Depends: R (>= 2.9.2)
Suggests: ff (>= 2.1-1), multtest, RUnit
SystemRequirements: MPI2, Unix, GNU Make
Description: A simple framework for performing computation in parallel
of R scripts and a library of parallelized R functions.
License: GPL (>= 3)
Packaged: 2010-07-27 12:40:28 UTC; mpiotrow
Repository: CRAN
Date/Publication: 2010-07-27 18:11:18
More information about sprint at CRAN
Path: /cran/new | permanent link
New package grt with initial version 0.1.0
Package: grt
Version: 0.1.0
Date: 2010-07-27
Depends: R (>= 2.10.1), grDevices, graphics, stats, utils, MASS, rgl,
misc3d
Author: The original Matlab toolbox by Leola A. Alfonso-Reese. R port,
with several significant modifications by Kazunaga Matsuki.
Maintainer: Kazunaga Matsuki
Description: Functions to generate and analyze data for psychology
experiments based on the General Recognition Theory.
Title: General Recognition Theory
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-27 07:36:32 UTC; hornik
Repository: CRAN
Date/Publication: 2010-07-27 07:43:12
More information about grt at CRAN
Path: /cran/new | permanent link
Mon, 26 Jul 2010
New package dismo with initial version 0.5-1
Package: dismo
Type: Package
Title: Species distribution modeling
Version: 0.5-1
Date: 25-July-2010
Depends: R (>= 2.7.0), rJava (>= 0.5-0), methods, raster, sp
Suggests: rgdal, gbm, splines, XML, ROCR, deldir, gstat, randomForest,
kernlab
Author: Robert Hijmans, Steven Phillips, John Leathwick and Jane Elith
Maintainer:
Description: Functions for species distribution modeling, that is,
predicting entire distributions form occurences at specific
sites.
License: GPL (>= 3)
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: dismo
Repository/R-Forge/Revision: 200
Date/Publication: 2010-07-26 21:43:10
Packaged: 2010-07-26 20:56:08 UTC; rforge
More information about dismo at CRAN
Path: /cran/new | permanent link
New package HDclassif with initial version 1.0
Package: HDclassif
Type: Package
Title: High Dimensionnal Classification.
Version: 1.0
Depends: graphics, stats, MASS
Date: 2010-07-01
Author: R.Aidan L.Berge C.Bouveyron S.Girard
Maintainer: L.Berge
Description: New disciminant analysis and data clustering methods for
high dimensional data, based on the asumption that
high-dimensional data live in different subspaces with low
dimensionality proposing a new parametrization of the Gaussian
mixture model which combines the ideas of dimension reduction
and constraints on the model.
License: GPL-2
LazyLoad: yes
ZipData: yes
Packaged: 2010-07-26 13:21:51 UTC; Laurent
Repository: CRAN
Date/Publication: 2010-07-26 21:02:10
More information about HDclassif at CRAN
Path: /cran/new | permanent link
New package WGCNA with initial version 0.92-3
Package: WGCNA
Version: 0.92-3
Date: 2010-07-26
Title: Weighted Gene Co-Expression Network Analysis
Author: Peter Langfelder
and Steve Horvath
Maintainer: Peter Langfelder
Depends: R (>= 2.3.0), stats, impute, grDevices, dynamicTreeCut (>=
1.20), utils, flashClust, qvalue, Hmisc, splines
Suggests: GO.db, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi
ZipData: no
License: GPL (>= 2)
Description: Functions necessary to perform Weighted Gene Co-Expression
Network Analysis
URL:
http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/BranchCutting/
Packaged: 2010-07-26 16:33:01 UTC; plangfelder
Repository: CRAN
Date/Publication: 2010-07-26 17:08:05
More information about WGCNA at CRAN
Path: /cran/new | permanent link
New package rAverage with initial version 0.3-1
Package: rAverage
Version: 0.3-1
Date: 2010-07-23
Title: Parameter estimation for the Averaging model of Information
Integration Theory
Author: Stefano Noventa
, Davide Massidda
, Marco Vicentini
, Giulio Vidotto
Maintainer: Stefano Noventa , Davide Massidda
Depends: R (>= 2.8), methods, tcltk, foreign
Suggests: RODBC
Description: Parameter estimation for the averaging model of Anderson's
Information Integration Theory
License: GPL (>= 2)
URL: http://qplab.psy.unipd.it/
Packaged: 2010-07-26 13:12:41 UTC; Davide
Repository: CRAN
Date/Publication: 2010-07-26 13:47:11
More information about rAverage at CRAN
Path: /cran/new | permanent link
New package BMS with initial version 0.2.4
Package: BMS
Type: Package
Title: Bayesian Model Averaging Library
Version: 0.2.4
Date: 2010-07-26
Author: Martin Feldkircher and Stefan Zeugner
Maintainer: Stefan Zeugner
Depends: R (>= 2.5), methods
Description: see help on BMS-package
License: Artistic-2.0
URL: http://bms.zeugner.eu
Packaged: 2010-07-26 09:01:12 UTC; zeugner
Repository: CRAN
Date/Publication: 2010-07-26 11:48:46
More information about BMS at CRAN
Path: /cran/new | permanent link
New package alabama with initial version 2010.7-1
Package: alabama
Type: Package
Title: Constrained nonlinear optimization
Description: Augmented Lagrangian Adaptive Barrier Minimization
Algorithm for optimizing smooth nonlinear objective functions
with constraints. Linear or nonlinear equality and inequality
constraints are allowed.
Depends: R (>= 2.10.1), numDeriv
Version: 2010.7-1
Date: 2010-07-24
Author: Ravi Varadhan (with contributions from Gabor Grothendieck)
Maintainer: Ravi Varadhan
URL:
http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-25 21:17:16 UTC; varadhan
Repository: CRAN
Date/Publication: 2010-07-26 09:32:56
More information about alabama at CRAN
Path: /cran/new | permanent link
Sun, 25 Jul 2010
New package LogicForest with initial version 1.0
Package: LogicForest
Type: Package
Title: Logic Forest
Version: 1.0
Date: 2010-07-07
Author: Bethany Wolf
Maintainer: Bethany Wolf
Depends: LogicReg, CircStats, gtools, plotrix
Description: Classification ensemble based on logic regression trees.
Used for classification of binary responses based on binary
predictors and for identification of important variables and
variable interactions predictive of a binary outcome.
License: GPL-2
LazyLoad: yes
Packaged: 2010-07-09 15:42:20 UTC; wolfb
Repository: CRAN
Date/Publication: 2010-07-25 11:06:03
More information about LogicForest at CRAN
Path: /cran/new | permanent link
New package GPseq with initial version 0.1
Package: GPseq
Type: Package
Title: gpseq: Using the generalized Poisson distribution to model
sequence read counts from high throughput sequencing
experiments
Version: 0.1
Date: 2010-07-21
Author: Sudeep Srivastava, Liang Chen
Maintainer: Sudeep Srivastava
Description: Some functions for modeling sequence read counts as a
generalized poisson model and to use this model for detecting
differentially expressed genes in different conditions and
differentially spliced exons.
Depends: R (>= 2.10.1)
License: GPL-2
LazyLoad: yes
Packaged: 2010-07-22 00:04:48 UTC; sudeepsr
Repository: CRAN
Date/Publication: 2010-07-25 11:05:48
More information about GPseq at CRAN
Path: /cran/new | permanent link
Sat, 24 Jul 2010
New package sigclust with initial version 1.0.0
Package: sigclust
Title: Statistical Significance of Clustering
Version: 1.0.0
Author: Hanwen Huang, Yufeng Liu & J. S. Marron
Description: SigClust is a statistical method for testing the
significance of clustering results. SigClust can be applied to
assess the statistical significance of splitting a data set
into two clusters. For more than two clusters, SigClust can be
used iteratively.
Depends: R (>= 2.4.0), methods
Maintainer: Hanwen Huang
License: GPL (>= 2)
Packaged: 2010-07-20 19:56:30 UTC; hanwenh
Repository: CRAN
Date/Publication: 2010-07-24 20:43:34
More information about sigclust at CRAN
Path: /cran/new | permanent link
New package rvgtest with initial version 0.5.0
Package: rvgtest
Type: Package
Title: Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators
Version: 0.5.0
Date: 2010-07-12
Author: Josef Leydold and Sougata Chaudhuri
Maintainer: Josef Leydold
Description: Test suite for non-uniform pseudo-random number
generators.
License: GPL-2
URL: http://statmath.wu.ac.at/unuran/
Repository: CRAN
Repository/R-Forge/Project: rvgtest
Repository/R-Forge/Revision: 47
Date/Publication: 2010-07-24 20:43:26
Packaged: 2010-07-12 20:52:32 UTC; rforge
More information about rvgtest at CRAN
Path: /cran/new | permanent link
New package pglm with initial version 0.1-0
Package: pglm
Version: 0.1-0
Date: 2010-07-13
Title: panel generalized linear model
Author: Yves Croissant
Maintainer: Yves Croissant
Depends: R (>= 1.8.0), maxLik, statmod, plm
Suggests: lmtest, car
Description: Estimation of panel models for glm-like models: this
includes binomial models (logit and probit) count models
(poisson and negbin) and ordered models (logit and probit)
License: GPL (>= 2)
URL: http://www.r-project.org
Repository: CRAN
Repository/R-Forge/Project: pglm
Repository/R-Forge/Revision: 4
Date/Publication: 2010-07-24 20:41:56
Packaged: 2010-07-13 20:52:24 UTC; rforge
More information about pglm at CRAN
Path: /cran/new | permanent link
New package evaluate with initial version 0.1
Package: evaluate
Type: Package
Title: Parsing and evaluation tools that provide more details than the
default.
Version: 0.1
Author: Hadley Wickham
Maintainer: Hadley Wickham
Description: Parsing and evaluation tools that make it easy to recreate
the command line behaviour of R.
License: GPL
Collate: 'eval.r' 'graphics.r' 'output.r' 'parse.r' 'replay.r'
'src-region.r' 'watcher.r'
Packaged: 2010-07-19 12:56:17 UTC; hadley
Repository: CRAN
Date/Publication: 2010-07-24 20:15:43
More information about evaluate at CRAN
Path: /cran/new | permanent link
New package SII with initial version 1.0.0
Package: SII
Type: Package
Title: Calculate ANSI S3.5-1997 Speech Intelligibility Index
Version: 1.0.0
Date: 2010-07-22
Author: Gregory R. Warnes
Maintainer: Gregory R. Warnes
Description: This package calculates ANSI S3.5-1997 Speech
Intelligibility Index (SII), a standard method for computing
the intelligibility of speech from acoustical measurements of
speech, noise, and hearing thresholds. This package includes
data frames corresponding to Tables 1 - 4 in the ANSI standard
as well as a function utilizing these tables and user-provided
hearing threshold and noise level measurements to compute the
SII score. The methods implemented here extend the standard
computations to allow calculation of SII when the measured
frequencies do not match those required by the standard by
applying interpolation to obtain values for the required
frequencies -- Development of this package was funded by the
Center for Bioscience Education and Technology (CBET) of the
Rochester Institute of Technology (RIT).
Depends:
Suggests: splines, gdata, xtable
License: GPL-2
LazyLoad: yes
Packaged: 2010-07-23 01:20:50 UTC; warnes
Repository: CRAN
Date/Publication: 2010-07-24 19:42:30
More information about SII at CRAN
Path: /cran/new | permanent link
Fri, 09 Jul 2010
New package list with initial version 1.0
Package: list
Version: 1.0
Date: 2010-07-08
Title: Multivariate Statistical Analysis for the Item Count Technique
Author: Graeme Blair
, Kosuke Imai
Maintainer: Graeme Blair
Depends: R (>= 2.10.0), utils, VGAM (>= 0.8-1), magic (>= 1.4-6),
gamlss.dist (>= 4.0-0)
Description: list is a publicly available R package that allows
researchers to conduct a multivariate statistical analysis for
the item count technique. This survey methodology is also
known as the list experiment or the unmatched count technique
is an alternative to the commonly used randomized response
method. The package implements the methods described in Imai
(2010).
LazyLoad: yes
LazyData: yes
License: GPL (>= 2)
Packaged: 2010-07-09 11:24:50 UTC; gblair
Repository: CRAN
Date/Publication: 2010-07-09 13:27:53
More information about list at CRAN
Path: /cran/new | permanent link
New package simexaft with initial version 1.0.2
Package: simexaft
Type: Package
Title: simexaft
Version: 1.0.2
Date: 2010-07-08
Author: Juan Xiong
, Wenqing He ,
Grace Y. Yi
Maintainer: Juan Xiong
Description: Implement of the Simulation-Extrapolation (SIMEX)
algorithm for the accelerated failure time (AFT) with
covariates subject to measurement error.
License: GPL
Depends: survival, mvtnorm
LazyLoad: yes
Packaged: 2010-07-08 20:44:11 UTC; pandahc
Repository: CRAN
Date/Publication: 2010-07-09 08:43:32
More information about simexaft at CRAN
Path: /cran/new | permanent link
New package delftfews with initial version 0.1-0
Package: delftfews
Version: 0.1-0
Date: 2010-07-08
Title: delftfews R extensions
Author: Mario Frasca
, Mich{\` e}l
van Leeuwen
Maintainer: Mario Frasca
Description: a collection of timeseries sets handling functions used
here at work (Nelen en Schuurmans), initially for the Lizard
Scripter.
License: GPL (>= 2)
Depends: R (>= 2.9.2), XML, logging (>= 0.4)
Repository: CRAN
Repository/R-Forge/Project: delftfews
Repository/R-Forge/Revision: 7
Date/Publication: 2010-07-09 08:50:26
Packaged: 2010-07-08 20:46:48 UTC; rforge
More information about delftfews at CRAN
Path: /cran/new | permanent link
Thu, 08 Jul 2010
New package expm with initial version 0.98-1
Package: expm
Type: Package
Title: Matrix exponential
Version: 0.98-1
Date: 2010-07-08
Author: Vincent Goulet, Christophe Dutang, Martin Maechler, David
Firth, Marina Shapira, Michael Stadelmann,
expm-developers@lists.R-forge.R-project.org
Maintainer: Martin Maechler
Description: Simple package for computation of the matrix exponential
and related quantities.
Depends: R (>= 2.9.2), Matrix
License: GPL (>= 2)
Packaged: 2010-07-08 16:26:23 UTC; maechler
Repository: CRAN
Date/Publication: 2010-07-08 18:31:16
More information about expm at CRAN
Path: /cran/new | permanent link
New package fwdmsa with initial version 0.1
Package: fwdmsa
Version: 0.1
Date: 2010-04-19
Title: Forward search for Mokken scale analysis
Author: Wobbe P. Zijlstra
Maintainer: Wobbe P. Zijlstra
Depends: R (>= 2.10.0)
Description: fwdmsa performs the Forward Search for Mokken scale
analysis. It detects outliers, it produces several types of
diagnostic plots.
License: GPL (>= 2)
URL: http://spitswww.uvt.nl/~pzijlstr/
Packaged: 2010-07-08 11:07:08 UTC; Pzijlstr
Repository: CRAN
Date/Publication: 2010-07-08 18:31:22
More information about fwdmsa at CRAN
Path: /cran/new | permanent link
Tue, 06 Jul 2010
New package NCBI2R with initial version 1.3
Package: NCBI2R
Type: Package
Title: NCBI2R-An R package to navigate and annotate genes and SNPs
Version: 1.3
Date: 2010-07-05
Author: Scott Melville
Maintainer: Scott Melville
Description: NCBI2R is a R package that annotates lists of SNPs and/or
genes, with current information from NCBI, including LD
information. Functions are provided that with one command will
provide annotation of the results from genome wide association
studies to provide a broader context of their meaning. Other
functions enable comparisons between a user's GWA results, and
candidate snp/gene lists that are created from keywords, such
as specific diseases, phenotypes or gene ontology terms.
Commands are simple to follow and designed to work with R
objects to integrate into existing workflows. The output
produces text fields and weblinks to more information for items
such as: gene descriptions, nucleotide positions, OMIM,
pathways, phenotypes, and lists of interacting and neighboring
genes. Annotation can then be used in R for further analysis,
or the objects can be customized for use in spreadsheet
programs or web browsers. The NCBI2R package was designed to
allow those performing genome analysis to produce output that
could easily be understood by a person not familiar with R.
Please see http://drop.io/NCBI2R_package for more information.
The internet is required for almost all of these functions.
License: GPL (> 2)
LazyLoad: yes
Packaged: 2010-07-06 03:28:22 UTC; melville
Repository: CRAN
Date/Publication: 2010-07-06 07:34:42
More information about NCBI2R at CRAN
Path: /cran/new | permanent link
Mon, 05 Jul 2010
New package rseedcalc with initial version 1.0
Package: rseedcalc
Type: Package
Title: Estimation of Proportion of GM Stacked Seeds in Seed Lots
Version: 1.0
Date: 2010-06-22
Author: Kevin Wright, Jean-Louis Laffont
Maintainer: Kevin Wright
Description: Estimate the percentage of seeds containing GM traits.
Suggests: RExcelInstaller, rcom
License: GPL-2
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: rseedcalc
Repository/R-Forge/Revision: 5
Date/Publication: 2010-07-05 11:21:20
Packaged: 2010-07-02 21:05:04 UTC; rforge
More information about rseedcalc at CRAN
Path: /cran/new | permanent link
New package MMST with initial version 0.6-1
Package: MMST
Type: Package
Title: DATASETS FROM MMST
Version: 0.6-1
Date: 2010-07-04
Author: Keith Halbert
Maintainer: Keith Halbert
Description: The datasets from Modern Multivariate Statistical
Techniques by Alan Julian Izenman are contained in this
package. The documentation descriptions show the page numbers
of references to the data set within the text. See the text
for detailed descriptions of the datasets. Also included in
this package is a function for exporting these datasets en
masse.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-04 14:26:57 UTC; K
Repository: CRAN
Date/Publication: 2010-07-05 11:20:30
More information about MMST at CRAN
Path: /cran/new | permanent link
Fri, 02 Jul 2010
New package nacopula with initial version 0.4-2
Package: nacopula
Version: 0.4-2
Date: 2010-07-02
LastChanged: $LastChangedRevision: 226 $; $LastChangedDate: 2010-07-02
09:41:53 +0200 (Fri, 02. Jul 2010) $
Title: Nested Archimedean Copulas
Description: An R package for nested Archimedean copulas, providing a
procedure for computing function values, characteristics such
as Kendall's tau and tail dependence coefficients, as well as
sampling algorithms for generating random variates.
Author: Marius Hofert
and Martin Maechler
Maintainer: Martin Maechler
Depends: methods, R (>= 2.9.1)
Imports: gsl
Suggests: lattice
License: GPL (>= 2)
LazyData: yes
Packaged: 2010-07-02 07:42:31 UTC; maechler
Repository: CRAN
Date/Publication: 2010-07-02 10:02:51
More information about nacopula at CRAN
Path: /cran/new | permanent link
New package bisoreg with initial version 1.0
Package: bisoreg
Type: Package
Title: Bayesian Isotonic Regression with Bernstein Polynomials
Version: 1.0
Date: 2008-10-07
Author: Removed for reviewers
Maintainer: S. McKay Curtis
Depends: R (>= 2.7.0), bootstrap, monreg, R2WinBUGS, coda
Description: Bayesian monotonic regression function
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-07-01 20:46:05 UTC; smcurtis
Repository: CRAN
Date/Publication: 2010-07-02 07:11:23
More information about bisoreg at CRAN
Path: /cran/new | permanent link
Wed, 30 Jun 2010
New package seqRFLP with initial version 1.0.0
Package: seqRFLP
Type: Package
Title: Simulation and visualization of restriction enzyme cutting
pattern from DNA sequences.
Version: 1.0.0
Date: 2010-06-29
Author: Qiong Ding, Jinlong Zhang
Maintainer: Qiong Ding
Description: This package includes functions for handling DNA
sequences, especially simulated RFLP and TRFLP pattern based on
selected restriction enzyme and DNA sequences.
License: GPL-2
LazyLoad: yes
Packaged: 2010-06-30 13:08:41 UTC; new
Repository: CRAN
Date/Publication: 2010-06-30 13:30:11
More information about seqRFLP at CRAN
Path: /cran/new | permanent link