Wed, 29 Jul 2015

New package googlePublicData with initial version 0.15.7.28
Package: googlePublicData
Type: Package
Title: Working with Google Public Data Explorer DSPL Metadata Files
Version: 0.15.7.28
Date: 2015-07-28
Authors@R: person("George", "Vega Yon", email="g.vegayon@gmail.com", role =c("aut","cre"))
Description: Provides a collection of functions designed for working with 'Google Public Data Explorer'. Automatically builds up the corresponding DSPL (XML) metadata files and CSV files; compressing all the files and leaving them ready to be published on the 'Public Data Explorer'.
Depends: R (>= 3.2.0)
Imports: XLConnect, XML, utils
License: MIT + file LICENSE
URL: http://github.com/gvegayon/googlePublicData/
BugReports: http://github.com/gvegayon/googlePublicData/issues
LazyLoad: yes
NeedsCompilation: no
Packaged: 2015-07-28 23:59:39 UTC; george
Author: George Vega Yon [aut, cre]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Repository: CRAN
Date/Publication: 2015-07-29 02:05:35

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New package HistogramTools with initial version 0.3.2
Package: HistogramTools
Type: Package
Title: Utility Functions for R Histograms
Version: 0.3.2
Date: 2015-07-28
Maintainer: Murray Stokely <murray@stokely.org>
Authors@R: c(person("Murray", "Stokely", role = c("aut", "cre"), email = "murray@stokely.org"), person("Tim", "Hesterberg", role = "ctb", email = "rocket@google.com"))
Copyright: Copyright 2011 Google, Inc.
Imports: Hmisc, ash, stringr
Suggests: RUnit, emdist, gdata
Enhances: RProtoBuf
Description: Provides a number of utility functions useful for manipulating large histograms. This includes methods to trim, subset, merge buckets, merge histograms, convert to CDF, and calculate information loss due to binning. It also provides a protocol buffer representations of the default R histogram class to allow histograms over large data sets to be computed and manipulated in a MapReduce environment.
URL: https://r-forge.r-project.org/projects/histogramtools/
Classification/ACM: G.3
License: Apache License 2.0
NeedsCompilation: no
Packaged: 2015-07-29 17:24:10 UTC; murraystokely
Author: Murray Stokely [aut, cre], Tim Hesterberg [ctb]
Repository: CRAN
Date/Publication: 2015-07-29 20:48:41

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New package camtrapR with initial version 0.97.0
Package: camtrapR
Type: Package
Title: Camera Trap Photograph Management and Preparation of Occupancy Analyses
Version: 0.97.0
Date: 2015-07-29
Author: Juergen Niedballa [aut, cre], Alexandre Courtiol [ctb]
Maintainer: Juergen Niedballa <niedballa@izw-berlin.de>
Depends: R (>= 3.1.0)
Imports: methods, overlap
Suggests: unmarked
Description: Management of and data extraction from camera trap photographs in wildlife studies. The package provides a workflow for storing and sorting camera trap photographs, computes record databases and detection/non-detection matrices for occupancy analysis with great flexibility. In addition, it provides simple mapping functions (number of species, number of independent species detections by station) and can plot activity data using various functions (using package overlap and adapting function from the plotrix package).
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-07-29 15:08:30 UTC; niedballa
Repository: CRAN
Date/Publication: 2015-07-29 17:51:21

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New package wiod with initial version 0.3.0
Package: wiod
Title: World Input Output Database 1995-2011
Version: 0.3.0
Authors@R: person("Bastiaan", "Quast", email = "bquast@gmail.com", role = c("aut", "cre"))
Description: Data sets from the World Input Output Database, for the years 1995-2011.
Maintainer: Bastiaan Quast <bquast@gmail.com>
Depends: R (>= 3.2.0)
License: GPL-3
URL: http://www.wiod.org/ http://qua.st/wiod, https://github.com/bquast/wiod
BugReports: https://github.com/bquast/wiod/issues
Imports: decompr, gvc
Suggests: knitr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-07-29 08:52:06 UTC; quast2
Author: Bastiaan Quast [aut, cre]
Repository: CRAN
Date/Publication: 2015-07-29 11:08:39

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New package pweight with initial version 0.0.1
Package: pweight
Type: Package
Title: P-Value Weighting
Version: 0.0.1
Date: 2015-07-26
Authors@R: c( person("Edgar", "Dobriban", email = "dobriban@stanford.edu", role = c("aut","cre")), person("Kristen", "Fortney", email = "kfortney@stanford.edu", role = "aut"))
URL: https://github.com/dobriban/pweight
BugReports: https://github.com/dobriban/pweight/issues
Description: This R package contains open source implementations of several p-value weighting methods, including Spjotvoll, exponential and Bayes weights. These are methods for improving power in multiple testing via the use of prior information.
License: GPL-3
LazyData: TRUE
Suggests: knitr
Imports: qqman
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-07-29 05:26:42 UTC; Edgar
Author: Edgar Dobriban [aut, cre], Kristen Fortney [aut]
Maintainer: Edgar Dobriban <dobriban@stanford.edu>
Repository: CRAN
Date/Publication: 2015-07-29 11:08:38

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New package RBerkeley with initial version 0.7-5
Package: RBerkeley
Type: Package
Title: Oracle 'Berkeley DB' Interface for R
Version: 0.7-5
Date: 2015-07-28
Author: Jeffrey A. Ryan [aut, cre], Bob Rudis [ctb]
SystemRequirements: Oracle Berkeley DB 11gR2+
Maintainer: Bob Rudis <bob@rudis.net>
Description: Oracle Berkeley DB - <http://www.oracle.com/technetwork/database/database-technologies/berkeleydb/overview/index.html> - is a family of embedded key-value database libraries providing scalable high-performance data management services to applications. The Berkeley DB products use simple function-call APIs for data access and management. This package provides an R interface to the Berkeley DB API.
License: GPL-3
NeedsCompilation: yes
OS_type: unix
Repository: CRAN
URL: http://github.com/hrbrmstr/RBerkeley
BugReports: https://github.com/hrbrmstr/RBerkeley/issues
Packaged: 2015-07-28 11:59:41 UTC; bob
Date/Publication: 2015-07-29 07:18:01

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New package lsl with initial version 0.5.0
Package: lsl
Type: Package
Title: Latent Structure Learning
Version: 0.5.0
Date: 2015-07-31
Authors@R: person("Po-Hsien", "Huang", role = c("aut", "cre"), email = "psyphh@gmail.com")
Author: Po-Hsien Huang [aut, cre]
Maintainer: Po-Hsien Huang <psyphh@gmail.com>
Description: Conduct latent structure learning methods, particularly structural equation modeling via penalized likelihood.
Depends: R (>= 3.2.0)
License: GPL (>= 2)
Imports: ggplot2, reshape2, methods
LazyData: true
NeedsCompilation: no
Packaged: 2015-07-29 04:49:22 UTC; PHHuang
Repository: CRAN
Date/Publication: 2015-07-29 07:18:03

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New package TipDatingBeast with initial version 0.1-6
Encoding: UTF-8
Package: TipDatingBeast
Type: Package
Title: Using Tip Dates with Phylogenetic Trees in BEAST
Version: 0.1-6
Date: 2015-07-28
Author: Adrien Rieux, Camilo Khatchikian
Maintainer: Camilo Khatchikian <ckhatchikian@gmail.com>
Depends: R (>= 3.1.2)
Imports: mclust, utils, stats
Description: Assist performing tip-dating of phylogenetic trees with BEAST.
License: GPL (>= 2)
URL: http://www.r-project.org
BugReports: TipDatingBeast@gmail.com
Packaged: 2015-07-29 01:45:11 UTC; Camilo
Repository: CRAN
Date/Publication: 2015-07-29 06:21:40
Archs: i386, x64
NeedsCompilation: no

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New package SoyNAM with initial version 1.0
Package: SoyNAM
Type: Package
Title: Soybean Nested Association Mapping Dataset
Version: 1.0
Date: 2015-07-28
Author: Alencar Xavier, William Muir, William Beavis, James Specht, Brian Diers, Katy Rainey.
Maintainer: Alencar Xavier <xaviera@purdue.edu>
Description: Genomic and multi-environmental soybean data. Soybean Nested Association Mapping (SoyNAM) project dataset funded by the United Soybean Board (USB), pre-formatted for general analysis and genome-wide association analysis using the NAM package.
License: GPL-3
Imports: NAM, lme4, reshape2
Depends: R (>= 3.0.2)
Packaged: 2015-07-28 23:28:25 UTC; alencar_x
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-07-29 06:21:37

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New package RRNA with initial version 1.0
Package: RRNA
Type: Package
Title: Secondary Structure Plotting for RNA
Version: 1.0
Date: 2015-07-27
Author: JP Bida
Maintainer: JP Bida <bida.john@gmail.com>
Description: Functions for creating and manipulating RNA secondary structure plots.
License: GPL-3
Packaged: 2015-07-28 22:49:21 UTC; jpbida
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-29 06:21:35

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New package D3M with initial version 0.31
Package: D3M
Type: Package
Title: Two Sample Test with Wasserstein Metric
Version: 0.31
Date: 2015-07-26
Author: Yusuke Matsui & Teppei Shimamura
Maintainer: Yusuke Matsui <ymatsui@med.nagoya-u.ac.jp>
Description: Two sample test based on Wasserstein metric. This is motivated from detection of differential DNA-methylation sites based on underlying distributions.
License: GPL (>= 2)
Imports: Rcpp, beanplot, stats, parallel, graphics, grDevices
LinkingTo: Rcpp
Packaged: 2015-07-29 01:17:51 UTC; sysbiol07
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-07-29 06:21:31

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New package ClamR with initial version 2.1-1
Package: ClamR
Type: Package
Title: Time Series Modeling for Climate Change Proxies
Version: 2.1-1
Date: 2015-07-27
Imports: stats
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees<jonathan.lees@unc.edu>
Description: Implementation of the Wilkinson and Ivany (2002) approach to paleoclimate analysis, applied to isotope data extracted from clams.
License: GPL
LazyLoad: yes
Packaged: 2015-07-28 22:48:53 UTC; lees
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-29 06:21:30

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Tue, 28 Jul 2015

New package webuse with initial version 0.1.1
Package: webuse
Version: 0.1.1
Date: 2015-07-28
Title: Import Stata 'webuse' Datasets
Authors@R: c(person("Thomas J.", "Leeper", role = c("aut", "cre"), email = "thosjleeper@gmail.com"))
Description: A Stata-style `webuse()` function for importing named datasets from Stata's online collection.
Imports: rio
License: MIT + file LICENSE
URL: https://github.com/leeper/arco
BugReports: https://github.com/leeper/arco/issues
NeedsCompilation: no
Packaged: 2015-07-28 17:48:21 UTC; Thomas
Author: Thomas J. Leeper [aut, cre]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Repository: CRAN
Date/Publication: 2015-07-28 23:38:47

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New package Rgnuplot with initial version 1.0.3
Package: Rgnuplot
Type: Package
Title: R Interface for Gnuplot
Version: 1.0.3
Encoding: UTF-8
Authors@R: c(person(given = "Jose", family = "Gama", role = c("aut","cre"),email = "rxprtgama@gmail.com"), person(given = "Nicolas", family = "Devillard", role = "aut"), person(given = "Mauricio", family = "Galo", role = "ctb"), person(given = "Patrick", family = "J. Bartlein", role = "ctb"), person(given = "Oscar", family = "Perpiñán Lamigueiro", role = "ctb") )
SystemRequirements: gnuplot
Description: Interface for gnuplot Based on gnuplot_i version 1.11, the GPL code from Nicolas Devillard.
License: GPL (>= 3)
Depends: R (>= 2.7.0), methods
Enhances: colorspace, png, rgdal, sp
Packaged: 2015-07-28 21:09:05.378 UTC; poky
Author: Jose Gama [aut, cre], Nicolas Devillard [aut], Mauricio Galo [ctb], Patrick J. Bartlein [ctb], Oscar Perpiñán Lamigueiro [ctb]
Maintainer: Jose Gama <rxprtgama@gmail.com>
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-07-29 00:20:58

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New package pco with initial version 1.0.1
Package: pco
Type: Package
Version: 1.0.1
Date: 2015-07-26
Title: Panel Cointegration Tests
Author: Georgi Marinov
Maintainer: Georgi Marinov <georgi.marinov@ue-varna.bg>
Depends: stats
Description: Computation of the Pedroni (1999) panel cointegration test statistics. Reported are the empirical and the standardized values.
License: GPL-2
NeedsCompilation: no
Packaged: 2015-07-28 19:20:10 UTC; st
Repository: CRAN
Date/Publication: 2015-07-29 00:06:51

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New package dotwhisker with initial version 0.1.0.1
Package: dotwhisker
Type: Package
Title: Dot-and-Whisker Plots of Regression Coefficients from Tidy Data Frames
Version: 0.1.0.1
Date: 2015-07-13
Author: Frederick Solt <frederick-solt@uiowa.edu>, Yue Hu <yue-hu-1@uiowa.edu>
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Description: Quick and easy dot-and-whisker plots of regression models saved in tidy data frames.
Depends: R (>= 3.2.1), ggplot2,dplyr, gridExtra, gtable
Imports: grid, stats
Suggests: broom, mfx, ordinal, knitr
License: MIT + file LICENSE
LazyData: TRUE
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-07-28 13:26:32 UTC; Sammo
Repository: CRAN
Date/Publication: 2015-07-28 23:40:41

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New package ranger with initial version 0.2.6
Package: ranger
Type: Package
Title: A Fast Implementation of Random Forests
Version: 0.2.6
Date: 2015-07-28
Author: Marvin N. Wright
Maintainer: Marvin N. Wright <wright@imbs.uni-luebeck.de>
Description: A fast implementation of Random Forests, particularly suited for high dimensional data. Ensembles of classification, regression, survival and probability prediction trees are supported. Data from genome-wide association studies can be analyzed efficiently. In addition to data frames, datasets of class 'gwaa.data' (R package GenABEL) can be directly analyzed.
License: GPL-3
Imports: Rcpp (>= 0.11.2)
LinkingTo: Rcpp
Depends: R (>= 3.1)
Suggests: survival
Packaged: 2015-07-28 10:51:07 UTC; wright
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-07-28 22:59:24

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New package MBTAr with initial version 1.0.0
Package: MBTAr
Type: Package
Title: Access Data from the Massachusetts Bay Transit Authority (MBTA) Web API
Version: 1.0.0
Authors@R: person("Justin", "de Benedictis-Kessner", email = "justindbk@gmail.com", role = c("aut", "cre"))
Depends: R (>= 3.2.1)
LazyData: true
Description: Access to the MBTA API for R. Creates an easy-to-use bundle of functions to work with all the built-in calls to the MBTA API. Allows users to download realtime tracking data in dataframe format that is manipulable in standard R analytics functions.
License: GPL-3
Imports: jsonlite
NeedsCompilation: no
Packaged: 2015-07-28 14:03:00 UTC; jdbk
Author: Justin de Benedictis-Kessner [aut, cre]
Maintainer: Justin de Benedictis-Kessner <justindbk@gmail.com>
Repository: CRAN
Date/Publication: 2015-07-28 23:06:31

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New package EMbC with initial version 1.9.3
Package: EMbC
Type: Package
Title: Expectation-Maximization Binary Clustering
Version: 1.9.3
Date: 2015-06-30
Author: Joan Garriga, John R.B. Palmer, Aitana Oltra, Frederic Bartumeus
Maintainer: Joan Garriga <jgarriga@ceab.csic.es>
Description: Unsupervised, multivariate, clustering algorithm yielding a meaningful binary clustering taking into account the uncertainty in the data. A specific constructor for trajectory movement analysis yields behavioural annotation of the tracks based on estimated local measures of velocity and turning angle, eventually with solar position covariate as a daytime indicator.
URL: 'Expectation-Maximization Binary Clustering for Behavioural Annotation', (submitted to PLOS ONE)
License: GPL-3 | file LICENSE
Imports: sp, methods, RColorBrewer, mnormt, maptools
Depends: move
Suggests: rgl, knitr
LazyData: true
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-07-28 16:43:39 UTC; jgarriga
Repository: CRAN
Date/Publication: 2015-07-28 22:43:28

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New package snn with initial version 1.0
Package: snn
Type: Package
Title: Stabilized Nearest Neighbor Classifier
Version: 1.0
Date: 2015-07-26
Author: Wei Sun, Xingye Qiao, and Guang Cheng
Maintainer: Wei Sun <sunweisurrey8@gmail.com>
Description: Implement K-nearest neighbor classifier, weighted nearest neighbor classifier, bagged nearest neighbor classifier, optimal weighted nearest neighbor classifier and stabilized nearest neighbor classifier, and perform model selection via 5 fold cross-validation for them. This package also provides functions for computing the classification error and classification instability of a classification procedure.
License: GPL-3
Depends: R (>= 3.0.0), stats
Packaged: 2015-07-28 04:29:05 UTC; wei
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-28 08:03:44

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New package PRIMsrc with initial version 0.5.7
Package: PRIMsrc
Type: Package
Title: PRIM Survival Regression Classification
Version: 0.5.7
Date: 2015-07-28
Authors@R: c(person("Jean-Eudes", "Dazard", role = c("aut", "cre"), email = "jxd101@case.edu"), person("Michael", "Choe", role = "ctb", email = "mjc206@case.edu"), person("Michael", "LeBlanc", role = "ctb", email = "mleblanc@fhcrc.org"), person("Alberto", "Santana", role = "ctb", email = "ahs4@case.edu"))
Author: Jean-Eudes Dazard [aut, cre], Michael Choe [ctb], Michael LeBlanc [ctb], Alberto Santana [ctb]
Maintainer: Jean-Eudes Dazard <jxd101@case.edu>
Description: Performs a unified treatment of Bump Hunting by Patient Rule Induction Method (PRIM) in Survival, Regression and Classification settings (SRC). The current version is a development release that only implements the case of a survival response. New features will be added soon as they are available.
Depends: R (>= 3.0.2), parallel, survival, Hmisc, glmnet, MASS
Imports: graphics, grDevices, stats
URL: https://github.com/jedazard/PRIMsrc
Repository: CRAN
License: GPL (>= 3) | file LICENSE
LazyLoad: yes
LazyData: yes
Archs: i386, x64
Packaged: 2015-07-28 01:37:26 UTC; jxd101
NeedsCompilation: no
Date/Publication: 2015-07-28 08:03:30

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New package fasttime with initial version 1.0-1
Package: fasttime
Version: 1.0-1
Title: Fast Utility Function for Time Parsing and Conversion
Author: Simon Urbanek <simon.urbanek@r-project.org>
Maintainer: Simon Urbanek <simon.urbanek@r-project.org>
Description: Fast functions for timestamp manipulation that avoid system calls and take shortcuts to facilitate operations on very large data.
License: GPL-2
URL: http://www.rforge.net/fasttime
NeedsCompilation: yes
Packaged: 2015-07-27 21:05:40 UTC; svnuser
Repository: CRAN
Date/Publication: 2015-07-28 08:03:39

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Mon, 27 Jul 2015

New package Rgbp with initial version 1.0.9
Package: Rgbp
Version: 1.0.9
Date: 2015-07-27
Title: Hierarchical Modeling and Frequency Method Checking on Overdispersed Gaussian, Poisson, and Binomial Data
Author: Joseph Kelly, Hyungsuk Tak, and Carl Morris
Maintainer: Joseph Kelly <josephkelly@post.harvard.edu>
Depends: R (>= 2.2.0), sn (>= 0.4-18), mnormt (>= 1.5-1)
Description: We utilize approximate Bayesian machinery to fit two-level conjugate hierarchical models on overdispersed Gaussian, Poisson, and Binomial data and evaluates whether the resulting approximate Bayesian interval estimates for random effects meet the nominal confidence levels via frequency coverage evaluation. The data that Rgbp assumes comprise observed sufficient statistic for each random effect, such as an average or a proportion of each group, without population-level data. The approximate Bayesian tool equipped with the adjustment for density maximization produces approximate point and interval estimates for model parameters including second-level variance component, regression coefficients, and random effect. For the Binomial data, the package provides an option to produce posterior samples of all the model parameters via the acceptance-rejection method. The package provides a quick way to evaluate coverage rates of the resultant Bayesian interval estimates for random effects via a parametric bootstrapping, which we call frequency method checking.
License: GPL-2
BugReports: https://github.com/jyklly/Rgbp/issues
Packaged: 2015-07-27 18:17:48 UTC; josephkelly
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-27 23:56:24

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New package QFRM with initial version 1.0.1
Package: QFRM
Type: Package
Title: Pricing of Vanilla and Exotic Option Contracts
Version: 1.0.1
Date: 2015-06-28
Maintainer: Oleg Melnikov <XisReal@gmail.com>
Authors@R: c( person("Oleg", "Melnikov", role = c("aut", "cre"), email = "XisReal@gmail.com"), person("Max", "Lee", role = "ctb", email = "max.lee@rice.edu"), person("Robert", "Abramov", role = "ctb", email = "rha1@rice.edu"), person("Richard", "Huang", role = "ctb", email = "richard.b.huang@rice.edu"), person("Liu", "Tong", role = "ctb", email = "tong.liu@rice.edu"), person("Jake", "Kornblau", role = "ctb", email = "jake.a.kornblau@rice.edu"), person("Xinnan", "Lu", role = "ctb", email = "xinnan.lu@rice.edu"), person("Kiryl", "Novikau", role = "ctb", email = "kiryl.novikau@rice.edu"), person("Tongyue", "Luo", role = "ctb", email = "tongyue.luo@rice.edu"), person("Le", "You", role = "ctb", email = "le.you@rice.edu"), person("Jin", "Chen", role = "ctb", email = "jin.chen@rice.edu"), person("Chengwei", "Ge", role = "ctb", email = "chengwei.ge@rice.edu"), person("Jiayao", "Huang", role = "ctb", email = "jiayao.huang@rice.edu"), person("Kim", "Raath", role = "ctb", email = "kcr2@rice.edu") )
Description: Option pricing (financial derivatives) techniques mainly following textbook 'Options, Futures and Other Derivatives', 9ed by John C.Hull, 2014. Prentice Hall. Implementations are via binomial tree option model (BOPM), Black-Scholes model, Monte Carlo simulations, etc. This package is a result of Quantitative Financial Risk Management course (STAT 449 and STAT 649) at Rice University, Houston, TX, USA, taught by Oleg Melnikov, statistics PhD student, as of Spring 2015.
Repository: CRAN
License: GPL (>= 2)
URL: http://Oleg.Rice.edu
NeedsCompilation: no
Depends: R (>= 2.14.0)
LazyLoad: yes
LazyData: yes
Imports: stats,methods,graphics
Packaged: 2015-07-27 22:28:29 UTC; Oleggio
Author: Oleg Melnikov [aut, cre], Max Lee [ctb], Robert Abramov [ctb], Richard Huang [ctb], Liu Tong [ctb], Jake Kornblau [ctb], Xinnan Lu [ctb], Kiryl Novikau [ctb], Tongyue Luo [ctb], Le You [ctb], Jin Chen [ctb], Chengwei Ge [ctb], Jiayao Huang [ctb], Kim Raath [ctb]
X-CRAN-Comment: Archived on 2015-05-08 as the maintainer <oleg.melnikov@rice.edu> said he is still collecting functions from his students and cleaning up the apparently unfinished package.
Date/Publication: 2015-07-28 00:48:16

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New package params with initial version 0.2
Package: params
Type: Package
Title: Simplify Parameters
Description: An interface to simplify organizing parameters used in a package, using external configuration files. This attempts to provide a cleaner alternative to options().
Version: 0.2
Date: 2015-07-10
Depends: whisker
Imports: knitr, utils
Suggests: openxlsx
URL: https://github.com/sahilseth/params
BugReports: https://github.com/sahilseth/params/issues
Authors@R: c(person("Sahil", "Seth", role = c("aut", "cre"), email = "me@sahilseth.com"))
License: GPL-2
NeedsCompilation: no
Packaged: 2015-07-27 16:54:21 UTC; sahilseth
Author: Sahil Seth [aut, cre]
Maintainer: Sahil Seth <me@sahilseth.com>
Repository: CRAN
Date/Publication: 2015-07-28 00:11:50

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New package spectrino with initial version 1.6.0
Package: spectrino
Type: Package
Title: Spectra Visualization, Organizer and Data Preparation
Version: 1.6.0
Date: 2015-07-27
Author: Teodor Krastev <spectrino@sicyon.com>
Maintainer: Teodor Krastev <spectrino@sicyon.com>
Description: Spectra visualization, organizer and data preparation from within R or stand-alone. Binary (application) part is installed separately by running spnInstallApp() immediately after installing the package.
License: GPL (>= 2)
OS_type: windows
Depends: R (>= 3.0.0)
Imports: utils, httpuv, jsonlite
LazyLoad: yes
LazyData: yes
URL: http://www.spectrino.com
BuildKeepEmpty: yes
Packaged: 2015-07-27 12:18:37 UTC; User
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-27 23:02:14

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New package qrage with initial version 1.0
Package: qrage
Type: Package
Title: Tools that Create D3 JavaScript Force Directed Graph from R
Version: 1.0
Date: 2015-07-27
Authors@R: c( person("\"Shingo Yamamoto (gloops, Inc.)\"",role=c("aut","cre"),email="si.yamamoto@gloops.com") ,person("RStudio, Inc.", role = "cph") ,person("Michael", "Bostock", role = c("ctb", "cph"), comment = "D3.js library") ,person(family = "jQuery Foundation", role = "cph",comment = "jQuery library and jQuery UI library") ,person(family = "jQuery contributors", role=c("ctb","cph"), comment= "jQuery library; authors listed in inst/htmlwidgets/lib/jquery/jquery-AUTHORS.txt") ,person(family = "jQuery UI contributors", role = c("ctb", "cph"),comment = "jQuery UI library; authors listed in inst/htmlwidgets/lib/jquery-ui/AUTHORS.txt") )
Author: "Shingo Yamamoto (gloops, Inc.)" [aut, cre], RStudio, Inc. [cph], Michael Bostock [ctb, cph] (D3.js library), jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/htmlwidgets/lib/jquery/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/htmlwidgets/lib/jquery-ui/AUTHORS.txt)
Maintainer: "Shingo Yamamoto (gloops, Inc.)" <si.yamamoto@gloops.com>
Description: Tools that create D3 JavaScript force directed graph from R. D3 JavaScript was created by Michael Bostock. See http://d3js.org/ and, more specifically for Force Directed Graph https://github.com/mbostock/d3/wiki/Force-Layout.
License: MIT + file LICENSE
Imports: htmlwidgets
Suggests: shiny
NeedsCompilation: no
Packaged: 2015-07-27 03:03:09 UTC; si.yamamoto
Repository: CRAN
Date/Publication: 2015-07-27 23:08:07

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New package muRL with initial version 0.1-10
Package: muRL
Type: Package
Title: Mailmerge using R, LaTeX, and the Web
Version: 0.1-10
Date: 2015-07-27
Author: Ryan T. Moore <rtm@american.edu> and Andrew Reeves <reeves@wustl.edu>
Maintainer: Ryan T. Moore <rtm@american.edu>
Depends: utils, maps
Imports: graphics
Description: Provides mailmerge methods for reading spreadsheets of addresses and other relevant information to create standardized but customizable letters. Provides a method for mapping US ZIP codes, including those of letter recipients. Provides a method for parsing and processing html code from online job postings of the American Political Science Association.
License: GPL-2 | file LICENSE
URL: http://nw18.american.edu/~rtm/software.muRL.htm
LazyLoad: yes
NeedsCompilation: no
Packaged: 2015-07-27 19:51:16 UTC; rtm
Repository: CRAN
Date/Publication: 2015-07-27 22:56:23

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New package OptGS with initial version 1.0
Package: OptGS
Type: Package
Title: Near-Optimal and Balanced Group-Sequential Designs for Clinical Trials with Continuous Outcomes
Version: 1.0
Date: 2015-07-27
Authors@R: c(person("James", "Wason", email = "james.wason@mrc-bsu.cam.ac.uk", role = c("aut", "cre")),person("John","Burkardt",role="ctb"))
Maintainer: James Wason <james.wason@mrc-bsu.cam.ac.uk>
Description: Functions to find near-optimal multi-stage designs for continuous outcomes.
License: GPL-2
Packaged: 2015-07-27 13:35:28 UTC; jamesw
NeedsCompilation: yes
Author: James Wason [aut, cre], John Burkardt [ctb]
Repository: CRAN
Date/Publication: 2015-07-27 15:40:26

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New package lazyWeave with initial version 3.0.0
Package: lazyWeave
Type: Package
Title: LaTeX Wrappers for R Users
Version: 3.0.0
Date: 2015-07-27
Author: Benjamin Nutter
Maintainer: Benjamin Nutter <nutter@battelle.org>
Description: Provides the functionality to write LaTeX code from within R without having to learn LaTeX. Functionality also exists to create HTML and Markdown code. While the functionality still exists to write complete documents with lazyWeave, it is generally easier to do so with with markdown and knitr. lazyWeave's main strength now is the ability to design custom and complex tables for reporting results.
License: GPL
LazyLoad: yes
Depends: R (>= 2.10.0)
Imports: Hmisc (>= 3.14-6)
Suggests: testthat
NeedsCompilation: no
Packaged: 2015-07-27 13:01:23 UTC; bnutter
Repository: CRAN
Date/Publication: 2015-07-27 15:05:40

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New package rddtools with initial version 0.4.0
Package: rddtools
Version: 0.4.0
Title: Toolbox for Regression Discontinuity Design ('RDD')
Description: Set of functions for Regression Discontinuity Design ('RDD'), for data visualisation, estimation and testing.
Authors@R: c( person("Matthieu", "Stigler", role = "aut"), person("Bastiaan", "Quast", email = "bquast@gmail.com", role = c("aut", "cre") ) )
Maintainer: Bastiaan Quast <bquast@gmail.com>
Imports: KernSmooth, ggplot2, rdd, sandwich, lmtest, Formula, locpol, methods
Depends: AER, np
Suggests: stats4, car, knitr, testthat
License: GPL (>= 2)
URL: https://github.com/bquast/RDDtools
BugReports: https://github.com/bquast/RDDtools/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-07-27 11:01:48 UTC; quast2
Author: Matthieu Stigler [aut], Bastiaan Quast [aut, cre]
Repository: CRAN
Date/Publication: 2015-07-27 13:32:08

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New package momr with initial version 1.1
Package: momr
Title: Mining Metaomics Data (MetaOMineR)
Version: 1.1
Date: 2015-07-24
Author: Edi Prifti, Emmanuelle Le Chatelier
Maintainer: Edi Prifti <edi.prifti@gmail.com>
Description: 'MetaOMineR' suite is a set of R packages that offers many functions and modules needed for the analyses of quantitative metagenomics data. 'momr' is the core package and contains routines for biomarker identification and exploration. Developed since the beginning of field, 'momr' has evolved and is structured around the different modules such as preprocessing, analysis, vizualisation, etc. See package help for more information.
License: Artistic-2.0
Depends: R (>= 2.10)
Imports: Hmisc, gplots, nortest
Collate: 'normalization.R' 'downsizing.R' 'querries.R' 'filtering.R' 'visualization.R' 'analyses.R' 'data.R' 'mapreduce.R'
LazyLoad: yes
License_restricts_use: yes
Packaged: 2015-07-27 10:20:05 UTC; eprifti
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-27 12:42:14

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Sun, 26 Jul 2015

New package landsat8 with initial version 0.1-9
Package: landsat8
Type: Package
Title: Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or Temperature
Version: 0.1-9
Date: 2015-07-21
Author: Alexandre dos Santos
Maintainer: Alexandre dos Santos <alexandre.santos@cas.ifmt.edu.br>
Description: Functions for converted Landsat 8 multispectral satellite imagery rescaled to the top of atmosphere (TOA) reflectance, radiance and/or at satellite brightness temperature using radiometric rescaling coefficients provided in the metadata file (MTL file).
Imports: rgdal, sp
Depends: R (>= 3.1.2)
License: GPL-2
LazyData: TRUE
Packaged: 2015-07-26 19:10:40 UTC; ASANTOS
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-26 23:10:31

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New package rstpm2 with initial version 1.2.2
Package: rstpm2
Type: Package
Title: Flexible Link-Based Survival Models
Authors@R: c(person("Mark", "Clements", role = c("aut", "cre"), email = "mark.clements@ki.se"), person("Xing-Rong", "Liu", role = "aut", email = "xingrong.liu@ki.se"), person("Paul", "Lambert", role = "ctb", email="pl4@leicester.ac.uk"))
Version: 1.2.2
Date: 2015-07-12
Depends: R (>= 2.10), methods, survival, splines
Imports: graphics, Rcpp (>= 0.10.2), numDeriv, stats, mgcv, bbmle (>= 1.0.3)
Suggests: RUnit, gaussquad
LinkingTo: Rcpp,RcppArmadillo
Author: Mark Clements [aut, cre], Xing-Rong Liu [aut], Paul Lambert [ctb]
Maintainer: Mark Clements <mark.clements@ki.se>
Description: R implementation of Stata's stpm2 function (flexible link-based survival models), with extensions to different smoothers and penalised models.
URL: http://github.com/mclements/rstpm2
BugReports: http://github.com/mclements/rstpm2/issues
License: GPL-2 | GPL-3
LazyLoad: yes
NeedsCompilation: yes
Packaged: 2015-07-26 09:13:35 UTC; marcle
Repository: CRAN
Date/Publication: 2015-07-26 18:57:30

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New package mHG with initial version 1.0
Package: mHG
Type: Package
Title: Minimum-Hypergeometric Test
Version: 1.0
Date: 2015-07-22
Author: Kobi Perl
Maintainer: Kobi Perl <kobipe3@gmail.com>
Description: Runs a minimum-hypergeometric (mHG) test as described in: Eden, E. (2007). Discovering Motifs in Ranked Lists of DNA Sequences. Haifa.
License: GPL-2
Depends: methods
Suggests: testthat
Packaged: 2015-07-26 06:41:10 UTC; kobiperl
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-26 09:23:57

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New package tglm with initial version 1.0
Package: tglm
Type: Package
Title: Binary Regressions under Independent Student-t Priors
Version: 1.0
Date: 2015-07-24
Author: Yingbo Li
Maintainer: Yingbo Li <ybli@clemson.edu>
Description: Use Gibbs sampler with Polya-Gamma data augmentation to fit logistic and probit regression under independent Student-t priors (including Cauchy priors and normal priors as special cases).
License: GPL (>= 2)
Depends: R (>= 2.14.0)
Imports: BayesLogit, mvtnorm, coda, truncnorm
Packaged: 2015-07-26 03:10:34 UTC; ybli
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-26 09:11:35

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New package packcircles with initial version 0.1.1
Package: packcircles
Type: Package
Title: Circle Packing
Version: 0.1.1
Date: 2015-07-22
Authors@R: c( person("Michael", "Bedward", role = c("aut", "cre"), email = "michael.bedward@gmail.com"), person("David", "Eppstein", role = "aut", email = "david.eppstein@gmail.com", comment = "Original author of Python code for graph-based circle packing ported to C++ for this package"))
Description: Simple algorithm to arrange non-overlapping circles within a rectangle.
License: MIT + file LICENSE
URL: https://github.com/mbedward/packcircles
Imports: Rcpp (>= 0.11.5)
Suggests: ggplot2, gridExtra, knitr
LinkingTo: Rcpp
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2015-07-26 03:49:55 UTC; mbedward
Author: Michael Bedward [aut, cre], David Eppstein [aut] (Original author of Python code for graph-based circle packing ported to C++ for this package)
Maintainer: Michael Bedward <michael.bedward@gmail.com>
Repository: CRAN
Date/Publication: 2015-07-26 09:11:33

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New package Mediana with initial version 1.0
Package: Mediana
Type: Package
Title: Clinical Trial Simulations
Version: 1.0
Date: 2015-07-25
Author: Gautier Paux, Alex Dmitrienko.
Maintainer: Gautier Paux <gautier@paux.fr>
Description: Provides a general framework for clinical trial simulations based on the Clinical Scenario Evaluation (CSE) approach. The package supports a broad class of data models (including clinical trials with continuous, binary, survival-type and count-type endpoints as well as multivariate outcomes that are based on combinations of different endpoints), analysis strategies and commonly used evaluation criteria.
Imports: doParallel, doRNG, foreach, MASS, mvtnorm, ReporteRs, stats, survival, utils
License: GPL-2
URL: http://biopharmnet.com/mediana
NeedsCompilation: no
Packaged: 2015-07-25 22:00:59 UTC; Gautier
Repository: CRAN
Date/Publication: 2015-07-26 09:11:19

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Sat, 25 Jul 2015

New package credule with initial version 0.1
Package: credule
Version: 0.1
Date: 2015-07-16
Title: Credit Default Swap Functions
Authors@R: c(person("Bertrand", "Le Nezet", role = c("cre","ctb", "cph"), email = "bertrand.lenezet@gmail.com" ))
Maintainer: Bertrand Le Nezet <bertrand.lenezet@gmail.com>
Depends: R (>= 2.14.1)
Description: One function to bootstrap a credit curve from market quotes (Credit Default Swap spreads) and another function to price Credit Default Swaps from a credit curve.
License: MIT + file LICENSE
NeedsCompilation: yes
Packaged: 2015-07-25 16:24:10 UTC; pc
Author: Bertrand Le Nezet [cre, ctb, cph]
Repository: CRAN
Date/Publication: 2015-07-25 23:13:39

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New package rgeolocate with initial version 0.4.1
Package: rgeolocate
Type: Package
Title: IP Address Geolocation
Version: 0.4.1
Date: 2015-07-25
Author: Oliver Keyes [aut, cre], Drew Schmidt [aut], Maxmind, Inc. [cph], Pascal Gloor [cph]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Copyright: MaxMind, Inc. for the underlying libmaxmminddb library, and the package authors for all other content.
Description: Connectors to online and offline sources for taking IP addresses and geolocating them to country, city, timezone and other geographic ranges. For individual connectors, see the package index.
License: Apache License (== 2.0)
BugReports: https://github.com/ironholds/rgeolocate/issues
LinkingTo: Rcpp
Imports: Rcpp, httr
Suggests: testthat, knitr, iptools
VignetteBuilder: knitr
Packaged: 2015-07-25 20:18:23 UTC; ironholds
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-07-25 23:05:39

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New package COMBIA with initial version 1.0-3
Encoding: UTF-8
Package: COMBIA
Type: Package
Title: Synergy/Antagonism Analyses of Drug Combinations
Version: 1.0-3
Date: 2015-07-24
Author: Muhammad Kashif
Maintainer: Muhammad Kashif <Muhammad.Kashif@medsci.uu.se>
Description: A comprehensive synergy/antagonism analyses of drug combinations with quality graphics and data. The analyses can be performed by Bliss independence and Loewe additivity models. COMBIA provides improved statistical analysis and makes only very weak assumption of data variability while calculating bootstrap intervals (BIs). Finally, package saves analyzed data, 2D and 3D plots ready to use in research publications. COMBIA does not require manual data entry. Data can be directly input from wetlab experimental platforms for example fluostar, automated robots etc. One needs to call a single function only to perform all analysis (examples are provided with sample data).
Depends: hash, gdata, lattice, latticeExtra, oro.nifti
Imports: grDevices, stats, utils
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: no
Packaged: 2015-07-25 06:07:42 UTC; dawood
Repository: CRAN
Date/Publication: 2015-07-25 11:38:23

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Fri, 24 Jul 2015

New package RKlout with initial version 1.0
Package: RKlout
Type: Package
Title: Fetch Klout Scores for Twitter Users
Version: 1.0
Date: 2015-07-22
Author: Binayak Goswami
Maintainer: Binayak Goswami <bnayok@gmail.com>
Description: An interface of R to Klout API v2. It fetches Klout Score for a Twitter Username/handle in real time. Klout is a website and mobile app that uses social media analytics to rank its users according to online social influence via the "Klout Score", which is a numerical value between 1 and 100. In determining the user score, Klout measures the size of a user's social media network and correlates the content created to measure how other users interact with that content.
License: GPL-2
Imports: RCurl
Packaged: 2015-07-24 17:26:33 UTC; Ubuntu
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-24 21:10:41

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New package varian with initial version 0.2.1
Package: varian
Type: Package
Version: 0.2.1
Title: Variability Analysis in R
Description: Uses a Bayesian model to estimate the variability in a repeated measure outcome and use that as an outcome or a predictor in a second stage model.
Date: 2015-7-24
Author: Joshua F. Wiley [aut, cre], Elkhart Group Limited [cph]
Maintainer: Joshua F. Wiley <josh@elkhartgroup.com>
URL: https://github.com/ElkhartGroup/varian
BugReports: https://github.com/ElkhartGroup/varian/issues
Depends: R (>= 3.1.1), rstan (>= 2.7.0), ggplot2
Imports: stats, MASS, Formula, grid, gridExtra
Suggests: testthat
LazyLoad: yes
License: MIT + file LICENSE
NeedsCompilation: no
Packaged: 2015-07-24 12:46:24 UTC; Joshua
Repository: CRAN
Date/Publication: 2015-07-24 18:21:42

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New package TransModel with initial version 1.0
Package: TransModel
Type: Package
Title: Fit Linear Transformation Models for Censored Data
Version: 1.0
Date: 2015-07-23
Author: Jie Zhou, Jiajia Zhang, Wenbin Lu
Maintainer: Jie Zhou <zhoujie02569@gmail.com>
Description: A unified estimation procedure for the analysis of censored data using linear transformation models.
License: GPL-2
Depends: stats,graphics,survival
Packaged: 2015-07-24 16:31:19 UTC; gazhou
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-24 19:05:32

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New package rotl with initial version 0.4.1
Package: rotl
Title: Interface to the 'Open Tree of Life' API
Version: 0.4.1
Authors@R: c( person("Francois", "Michonneau", role=c("aut", "cre"), email="francois.michonneau@gmail.com"), person("Joseph", "Brown", role="aut"), person("David", "Winter", role="aut"))
Description: An interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all named species.
URL: https://github.com/ropensci/rotl
BugReports: https://github.com/ropensci/rotl/issues
Depends: R (>= 3.1.1)
Imports: httr, jsonlite, rncl (>= 0.6.0), ape
License: BSD_2_clause + file LICENSE
Suggests: knitr (>= 1.10.5), rmarkdown (>= 0.7), testthat, RNeXML, phylobase
VignetteBuilder: knitr
LazyData: true
NeedsCompilation: no
Packaged: 2015-07-24 14:37:18 UTC; francois
Author: Francois Michonneau [aut, cre], Joseph Brown [aut], David Winter [aut]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Repository: CRAN
Date/Publication: 2015-07-24 18:21:38

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New package warbleR with initial version 1.0.1
Package: warbleR
Type: Package
Title: Streamline Bioacoustic Analysis
Version: 1.0.1
Date: 2015-07-22
Author: Marcelo Araya-Salas, Grace Smith Vidaurre, Hua Zhong
Maintainer: Marcelo Araya-Salas <marceloa27@gmail.com>
Description: Offers three overarching categories of functions to download recordings and metadata from Xeno Canto, manage sound files, and facilitate acoustic analysis in R.
License: GPL (>= 2)
Imports: rjson, pbapply, RCurl, fftw, utils, stats, grDevices, graphics
Depends: R (>= 2.10), maps, seewave (>= 2.0.1), tuneR
LazyData: TRUE
NeedsCompilation: no
Packaged: 2015-07-23 23:04:11 UTC; m
Repository: CRAN
Date/Publication: 2015-07-24 07:54:19

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New package PharmacoGx with initial version 1.0.6
Package: PharmacoGx
Type: Package
Title: Large-Scale Analysis of Pharmacogenomic Data
Version: 1.0.6
Date: 2015-07-23
Author: Petr Smirnov, Zhaleh Safikhani, Benjamin Haibe-Kains
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Description: Contains a set of functions to perform large-scale analysis of pharmacogenomic data.
License: Artistic-2.0
Suggests: xtable
Encoding: UTF-8
Imports: Biobase, piano, magicaxis, RColorBrewer, parallel, caTools, methods, downloader, stats, utils, graphics, grDevices
Depends: R (>= 2.10)
URL: http://www.pmgenomics.ca/bhklab/software/pharmacogx
LazyData: yes
NeedsCompilation: no
Packaged: 2015-07-23 21:59:54 UTC; haibeb
Repository: CRAN
Date/Publication: 2015-07-24 07:53:45

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New package acmeR with initial version 1.0.0
Package: acmeR
Title: Implements ACME Estimator of Bird and Bat Mortality by Wind Turbines
Version: 1.0.0
Authors@R: c(person("Robert", "Wolpert", email = "wolpert@stat.duke.edu", role = c("aut", "cre")), person("Jacob", "Coleman", email = "jrc71@stat.duke.edu", role = c("aut")))
Description: Implementation of estimator ACME, described in Wolpert (2015), ACME: A Partially Periodic Estimator of Avian & Chiropteran Mortality at Wind Turbines (submitted). Unlike most other models, this estimator supports decreasing-hazard Weibull model for persistence; decreasing search proficiency as carcasses age; variable bleed-through at successive searches; and interval mortality estimates. The package provides, based on search data, functions for estimating the mortality inflation factor in Frequentist and Bayesian settings.
Depends: R (>= 3.1.1)
Imports: foreign (>= 0.8-63), grDevices (>= 3.1.1), graphics (>= 3.1.1), stats (>= 3.1.1), utils (>= 3.1.1)
License: MIT + file LICENSE
LazyData: true
NeedsCompilation: no
Packaged: 2015-07-23 18:18:44 UTC; rlw
Author: Robert Wolpert [aut, cre], Jacob Coleman [aut]
Maintainer: Robert Wolpert <wolpert@stat.duke.edu>
Repository: CRAN
Date/Publication: 2015-07-24 07:53:48

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Thu, 23 Jul 2015

New package functools with initial version 0.1.0
Package: functools
Title: Extending Functional Programming in R
Version: 0.1.0
Description: Extending functional programming in R by providing support to the usual higher order functional suspects (Map, Reduce, Filter, etc.).
Authors@R: person("Paul", "Hendricks", , "paul.hendricks.2013@owu.edu", c("aut", "cre"))
URL: https://github.com/paulhendricks/functools
BugReports: https://github.com/paulhendricks/functools/issues
Depends: R (>= 3.1.2)
License: MIT + file LICENSE
LazyData: true
Suggests: testthat
NeedsCompilation: no
Packaged: 2015-07-23 14:04:27 UTC; phendricks
Author: Paul Hendricks [aut, cre]
Maintainer: Paul Hendricks <paul.hendricks.2013@owu.edu>
Repository: CRAN
Date/Publication: 2015-07-23 16:33:00

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New package EstHer with initial version 1.0
Package: EstHer
Type: Package
Title: Estimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection
Version: 1.0
Date: 2015-07-16
Author: Anna Bonnet and Celine Levy-Leduc
Maintainer: Anna Bonnet <anna.bonnet@agroparistech.fr>
Description: Our method is a variable selection method to select active components in sparse linear mixed models in order to estimate the heritability. The selection allows us to reduce the size of the data sets which improves the accuracy of the estimations. Our package also provides a confidence interval for the estimated heritability.
License: GPL-2
Depends: R (>= 2.10), glmnet, parallel, MASS
Imports: Rcpp (>= 0.11.5)
LinkingTo: Rcpp, RcppArmadillo
Packaged: 2015-07-23 13:56:04 UTC; abonnet
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-07-23 16:32:59

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New package BayesComm with initial version 0.1-2
Package: BayesComm
Type: Package
Title: Bayesian Community Ecology Analysis
Version: 0.1-2
Date: 2015-07-20
Author: Nick Golding and David J. Harris
Maintainer: Nick Golding <nick.golding.research@gmail.com>
Description: Bayesian multivariate binary (probit) regression models for analysis of ecological communities.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.6), abind, coda, mvtnorm
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2015-07-23 14:16:58 UTC; lina1864
Repository: CRAN
Date/Publication: 2015-07-23 16:32:57

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New package SparseFactorAnalysis with initial version 1.0
Package: SparseFactorAnalysis
Type: Package
Title: Scaling Count and Binary Data with Sparse Factor Analysis
Version: 1.0
Date: 2015-07-20
Author: Marc Ratkovic, In Song Kim, John Londregan, and Yuki Shiraito
Maintainer: Marc Ratkovic <ratkovic@princeton.edu>
Description: Multidimensional scaling provides a means of uncovering a latent structure underlying observed data, while estimating the number of latent dimensions. This package presents a means for scaling binary and count data, for example the votes and word counts for legislators. Future work will include an EM implementation and extend this work to ordinal and continuous data.
License: GPL (>= 2)
Depends: directlabels, proto, ggplot2
Imports: Rcpp (>= 0.11.4), MASS, VGAM, truncnorm
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2015-07-23 03:06:28 UTC; ratkovic
Repository: CRAN
Date/Publication: 2015-07-23 07:05:04

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New package scorer with initial version 0.1.0
Package: scorer
Title: Quickly Score Models
Version: 0.1.0
Description: A set of tools to quickly score models commonly used to data analysis and data science using uncommon scoring metrics. For example, you might want to use a weighted absolute percent error instead of a root mean square deviation to score that regression model.
Authors@R: person("Paul", "Hendricks", , "paul.hendricks.2013@owu.edu", c("aut", "cre"))
URL: https://github.com/paulhendricks/scorer
BugReports: https://github.com/paulhendricks/scorer/issues
Depends: R (>= 3.1.2)
License: MIT + file LICENSE
LazyData: true
Suggests: testthat
NeedsCompilation: no
Packaged: 2015-07-22 14:00:02 UTC; phendricks
Author: Paul Hendricks [aut, cre]
Maintainer: Paul Hendricks <paul.hendricks.2013@owu.edu>
Repository: CRAN
Date/Publication: 2015-07-23 05:46:07

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New package reservoir with initial version 1.0.0
Package: reservoir
Type: Package
Title: Tools for Analysis, Design, and Operation of Water Supply Storages
Version: 1.0.0
Date: 2015-07-23
Authors@R: c( person("Sean", "Turner", , "swd.turner@gmail.com", c("aut", "cre")), person("Stefano", "Galelli", , "stefano_galelli@sutd.edu.sg", "aut") )
URL: https://github.com/swd-turner/reservoir
Description: Measure single-storage water supply system performance using resilience, reliability, and vulnerability metrics; assess storage-yield-reliability relationships; determine no-fail storage with sequent peak analysis; optimize release decisions using deterministic and stochastic dynamic programming; evaluate inflow persistence using the Hurst coefficient.
License: GPL (>= 2)
LazyData: yes
Imports: gtools, stats
NeedsCompilation: no
Packaged: 2015-07-23 03:48:46 UTC; sean_turner
Author: Sean Turner [aut, cre], Stefano Galelli [aut]
Maintainer: Sean Turner <swd.turner@gmail.com>
Repository: CRAN
Date/Publication: 2015-07-23 07:16:21

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New package colorscience with initial version 1.0.1
Package: colorscience
Type: Package
Title: Color Science Methods and Data
Version: 1.0.1
Encoding: UTF-8
Maintainer: Jose Gama <rxprtgama@gmail.com>
Authors@R: c(person(given = "Jose", family = "Gama", role = c("aut","cre"),email = "rxprtgama@gmail.com"))
Description: Methods and data for color science - color conversions by observer, illuminant and gamma. Color matching functions and chromaticity diagrams. Color indices, color differences and spectral data conversion/analysis.
License: GPL (>= 3)
Depends: R (>= 2.10), Hmisc, munsellinterpol, pracma, sp
Enhances: png
LazyData: yes
Author: Jose Gama [aut, cre]
Repository: CRAN
Repository/R-Forge/Project: colorscience
Repository/R-Forge/Revision: 9
Repository/R-Forge/DateTimeStamp: 2015-07-23 07:02:23
Date/Publication: 2015-07-23 11:35:01
NeedsCompilation: no
Packaged: 2015-07-23 07:26:22 UTC; rforge

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New package munsellinterpol with initial version 1.0.2
Package: munsellinterpol
Type: Package
Title: Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
Version: 1.0.2
Encoding: UTF-8
Authors@R: c(person(given = "Jose", family = "Gama", role = c("aut","cre","trl"),email = "rxprtgama@gmail.com"), person(given = "Paul", family = "Centore", role = c("aut","cph"),email = "centore@99main.com"))
Description: Methods for interpolating data in the Munsell color system following the ASTM D-1535 standard. Hues and chromas with decimal values can be interpolated and converted to/from the Munsell color system and CIE xyY, CIE XYZ, sRGB, CIE Lab or CIE Luv. Chromas can be odd and hue steps can be real numbers. Based on the work by Paul Centore, "The Munsell and Kubelka-Munk Toolbox".
License: GPL (>= 3)
LazyLoad: no
LazyData: no
Depends: R (>= 2.10), geometry
Author: Jose Gama [aut, cre, trl], Paul Centore [aut, cph]
Maintainer: Jose Gama <rxprtgama@gmail.com>
Repository: CRAN
Repository/R-Forge/Project: munsellinterpol
Repository/R-Forge/Revision: 14
Repository/R-Forge/DateTimeStamp: 2015-07-22 15:36:13
Date/Publication: 2015-07-23 06:58:30
NeedsCompilation: no
Packaged: 2015-07-22 15:45:12 UTC; rforge
X-CRAN-Comment: Archived on 2014-12-07 as maintainer address <jgama@abo.fi> bounced.

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New package FastGP with initial version 1.0
Package: FastGP
Type: Package
Title: Efficiently Using Gaussian Processes with Rcpp and RcppEigen
Version: 1.0
Date: 2015-07-20
Author: Giri Gopalan, Luke Bornn
Maintainer: Giri Gopalan <gopalan88@gmail.com>
Description: Contains Rcpp and RcppEigen implementations of matrix operations useful for Gaussian process models, such as the inversion of a symmetric Toeplitz matrix, sampling from multivariate normal distributions, evaluation of the log-density of a multivariate normal vector, and Bayesian inference for latent variable Gaussian process models with elliptical slice sampling (Murray, Adams, and MacKay 2010).
License: GPL-2
Imports: Rcpp, MASS, mvtnorm, rbenchmark, stats
LinkingTo: Rcpp, RcppEigen
Repository: CRAN
NeedsCompilation: yes
Packaged: 2015-07-22 19:22:24 UTC; DRB-Giri
Date/Publication: 2015-07-23 06:58:55

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Wed, 22 Jul 2015

New package highriskzone with initial version 1.2
Package: highriskzone
Type: Package
Title: Determining and Evaluating High-Risk Zones
Version: 1.2
Date: 2015-07-09
Author: Heidi Seibold <Heidi.Seibold@uzh.ch>, Monia Mahling <monia.mahling@stat.uni-muenchen.de>, Sebastian Linne <Sebastian.Linne@campus.lmu.de>
Maintainer: Heidi Seibold <Heidi.Seibold@uzh.ch>
Depends: ks, fields, rgeos, deldir, Matrix
Imports: spatstat, methods, stats, utils
Suggests: INLA
Additional_repositories: http://www.math.ntnu.no/inla/R/stable
Description: Functions for determining and evaluating high-risk zones and simulating and thinning point process data, as described in 'Determining high risk zones using point process methodology - Realization by building an R package' (Seibold, 2012) and 'Determining high-risk zones for unexploded World War II bombs by using point process methodology' (Mahling et al., 2013).
License: MIT + file LICENSE
Repository: CRAN
Repository/R-Forge/Project: highriskzone
Repository/R-Forge/Revision: 78
Repository/R-Forge/DateTimeStamp: 2015-07-22 09:55:35
Date/Publication: 2015-07-22 23:01:07
NeedsCompilation: no
Packaged: 2015-07-22 10:10:23 UTC; rforge
X-CRAN-Comment: Archived on 2014-10-31 as never updated for changes to spatstat despite multiple reminders.

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New package mri with initial version 0.1.1
Package: mri
Type: Package
Title: Modified Rand Index (1 and 2.1 and 2.2) and Modified Adjusted Rand Index (1 and 2.1 and 2.2)
Version: 0.1.1
Date: 2015-07-20
Author: Marjan Cugmas
Maintainer: Marjan Cugmas <marjan.cugmas@fdv.uni-lj.si>
Description: Provides three Modified Rand Indices and three Modified Adjusted Rand Indices for comparing two partitions, which are usually obtained on two different sets of units, where one is a subset of another set of units. Splitting and merging of clusters have a different affects on the value of the indices.
License: GPL (>= 2)
LazyData: TRUE
NeedsCompilation: no
Packaged: 2015-07-22 12:53:29 UTC; marss
Repository: CRAN
Date/Publication: 2015-07-22 16:15:48

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New package favnums with initial version 1.0.0
Package: favnums
Type: Package
Depends: R (>= 2.10)
Title: A Dataset of Favourite Numbers
Version: 1.0.0
Date: 2015-07-21
Author: Oliver Keyes [aut, cre], Alex Bellos [cph]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Description: A dataset of favourite numbers, selected from an online poll of over 30,000 people by Alex Bellos (http://pages.bloomsbury.com/favouritenumber).
License: CC0
LazyData: true
NeedsCompilation: no
Packaged: 2015-07-22 13:02:23 UTC; ironholds
Repository: CRAN
Date/Publication: 2015-07-22 16:15:47

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New package ConsRank with initial version 0.0
Package: ConsRank
Type: Package
Title: Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach
Version: 0.0
Date: 2015-07-17
Author: Antonio D'Ambrosio <antdambr@unina.it>, Sonia Amodio <sonia.amodio@unina.it>
Maintainer: Antonio D'Ambrosio <antdambr@unina.it>
Depends: MASS,proxy,rgl,gtools
Description: Compute the median ranking according the Kemeny's axiomatic approach. Rankings can or cannot contain ties, rankings can be both complete or incomplete.
License: GPL-3
URL: http://www.r-project.org
Repository: CRAN
NeedsCompilation: no
Packaged: 2015-07-22 11:31:08 UTC; An
Date/Publication: 2015-07-22 16:15:27

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New package biomartr with initial version 0.0.1
Package: biomartr
Title: Biological Data Retrieval with R
Version: 0.0.1
Author: Hajk-Georg Drost
Maintainer: Hajk-Georg Drost <hajk-georg.drost@informatik.uni-halle.de>
Description: Performing biological data retrieval and functional annotation with R.
Depends: R (>= 3.1.1)
Imports: biomaRt (>= 2.24.0), Biostrings (>= 2.32.1), data.table (>= 1.9.4), dplyr (>= 0.3.0), downloader (>= 0.3), RCurl (>= 1.95-4.5), XML (>= 3.98-1.1), httr (>= 0.6.1), stringr (>= 0.6.2)
License: GPL-3
LazyData: true
Suggests: testthat
NeedsCompilation: no
Packaged: 2015-07-22 11:42:04 UTC; h-gd
Repository: CRAN
Date/Publication: 2015-07-22 16:15:42

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New package satellite with initial version 0.1.0
Package: satellite
Type: Package
Title: Various Functions for Handling and Manipulating Remote Sensing Data
Version: 0.1.0
Date: 2015-07-22
Author: Thomas Nauss, Hanna Meyer, Florian Detsch, Tim Appelhans
Maintainer: Tim Appelhans <admin@environmentalinformatics-marburg.de>
Description: This smorgasbord provides a variety of functions which are useful for handling, manipulating and visualizing remote sensing data.
Depends: R (>= 2.10), raster, Rcpp (>= 0.10.3), methods, utils, stats, grDevices, graphics
Imports: plyr, tools
License: GPL-3
Suggests: devtools, knitr, rgdal, testthat
LazyData: true
VignetteBuilder: knitr
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2015-07-22 09:13:20 UTC; ede
Repository: CRAN
Date/Publication: 2015-07-22 12:37:38

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New package htmltab with initial version 0.6.0
Package: htmltab
Title: Assemble Data Frames from HTML Tables
Version: 0.6.0
Authors@R: person("Christian", "Rubba", email = "christian.rubba@gmail.com", role = c("aut", "cre"))
Description: HTML tables are a valuable data source but extracting and recasting these data into a useful format can be tedious. htmltab is a package for extracting structured information from HTML tables. It is similar to readHTMLTable() of the XML package but provides two major advantages. First, the function automatically expands row and column spans in the header and body cells. Second, users are given more control over the identification of header and body rows which will end up in the R table. Additionally, the function preprocesses table code, removes unneeded parts and so helps to alleviate the need for tedious post-processing.
Depends: R (>= 3.0.0)
Imports: XML (>= 3.98.1.3), httr (>= 1.0.0)
License: MIT + file LICENSE
LazyData: true
Suggests: testthat, knitr, magrittr (>= 1.5), tidyr
URL: https://github.com/crubba/htmltab
BugReports: https://github.com/crubba/htmltab/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-07-22 07:31:18 UTC; christian
Author: Christian Rubba [aut, cre]
Maintainer: Christian Rubba <christian.rubba@gmail.com>
Repository: CRAN
Date/Publication: 2015-07-22 12:21:09

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New package PlotPrjNetworks with initial version 1.0.0
Package: PlotPrjNetworks
Type: Package
Title: Useful Networking Tools for Project Management
Version: 1.0.0
Date: 2015-07-04
Author: Javier Celigueta Mu<c3><b1>oz
Maintainer: Joaquin Bienvenido Ordieres Mere <j.ordieres@upm.es>
Description: Useful set of tools for plotting network diagrams in any kind of project.
License: GPL-3
Imports: reshape2, ggplot2, grid
Packaged: 2015-07-20 22:34:00 UTC; celigueta
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-22 07:24:20

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New package imputeTS with initial version 0.1
Package: imputeTS
Version: 0.1
Date: 2015-07-21
Title: Time Series Missing Value Imputation
Description: Imputation (replacement) of missing values in univariate time series.
Author: Steffen Moritz
Maintainer: Steffen Moritz <steffen.moritz10@gmail.com>
Type: Package
LazyData: yes
ByteCompile: TRUE
Depends: R (>= 3.0.1)
Imports: stats
License: GPL (>= 2)
Packaged: 2015-07-22 04:04:10 UTC; Steve
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-22 06:13:12

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Tue, 21 Jul 2015

New package sparsereg with initial version 1.0
Package: sparsereg
Type: Package
Title: Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data
Version: 1.0
Date: 2015-07-20
Author: Marc Ratkovic and Dustin Tingley
Maintainer: Marc Ratkovic <ratkovic@princeton.edu>
Description: Sparse modeling provides a mean selecting a small number of non-zero effects from a large possible number of candidate effects. This package includes a suite of methods for sparse modeling. Beyond regression analyses, applications include subgroup analysis, particularly for conjoint experiments, and panel data. Functionality for dichotomous and censored outcome (Types I and II tobit) is also included. Future plans involve extending the method to propensity score and instrumental variable methods.
License: GPL (>= 2)
Depends: R (>= 3.0.2), MASS, ggplot2
Imports: Rcpp (>= 0.11.0), msm, VGAM, MCMCpack, coda, glmnet, gridExtra, grid
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2015-07-20 22:47:57 UTC; ratkovic
Repository: CRAN
Date/Publication: 2015-07-21 07:53:29

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New package jetset with initial version 3.1.3
Package: jetset
Version: 3.1.3
Date: 2015-07-20
Title: One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays
Author: Qiyuan Li, Aron Eklund
Maintainer: Aron Eklund <eklund@cbs.dtu.dk>
Depends: R (>= 2.10)
Imports: org.Hs.eg.db, AnnotationDbi
Description: On Affymetrix gene expression microarrays, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene "signature" that is defined by gene names rather than by specific probe sets. This package provides a one-to-one mapping from gene to "best" probe set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a, hgu133plus2, and u133x3p. This package also includes the pre-calculated probe set quality scores that were used to define the mapping.
License: Artistic-2.0
LazyData: Yes
URL: http://www.cbs.dtu.dk/biotools/jetset/
NeedsCompilation: no
Packaged: 2015-07-20 20:34:18 UTC; aron
Repository: CRAN
Date/Publication: 2015-07-21 07:53:22

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New package IRISSeismic with initial version 1.0.5
Type: Package
Package: IRISSeismic
Version: 1.0.5
Title: Classes and Methods for Seismic Data Analysis
Authors@R: c( person("Jonathan", "Callahan", email="jonathan.s.callahan@gmail.com", role=c("aut","cre")), person("Rob", "Casey", email="rob@iris.washington.edu", role=c("aut")), person("Mary", "Templeton", email="met@iris.washington.edu", role=c("aut")) )
Author: Jonathan Callahan [aut, cre], Rob Casey [aut], Mary Templeton [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Depends: R (>= 3.1.0)
Imports: methods, pracma, RCurl, seismicRoll (>= 1.0.1), signal, stringr, XML
Suggests: mapdata, maps
Description: Provides classes and methods for seismic data analysis. The base classes and methods are inspired by the python code found in the 'ObsPy' python toolbox <http://github.com/obsypy/obspy>. Additional classes and methods support data returned by web services provided by the 'IRIS DMC' <http://service.iris.edu/>.
Collate: Class-Trace.R Class-Stream.R Class-IrisClient.R mseedWrappers.R Utils.R spectralUtils.R
License: GPL (>= 2)
Repository: CRAN
Packaged: 2015-07-20 20:53:33 UTC; jonathan
NeedsCompilation: yes
Date/Publication: 2015-07-21 07:53:04

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New package ifaTools with initial version 0.6
Package: ifaTools
Date: 2015-07-21
Title: Toolkit for Item Factor Analysis with OpenMx
Authors@R: c(person(c("Joshua","N."), family="Pritikin", email="jpritikin@pobox.com", role=c('cre','aut')))
Version: 0.6
Description: Tools, tutorials, and demos of Item Factor Analysis using OpenMx.
LazyData: yes
LazyDataCompression: bzip2
License: AGPL (>= 3)
Imports: methods
Suggests: testthat, roxygen2, knitr (>= 1.8)
Depends: shiny (>= 0.10), ggplot2, reshape2, rpf (>= 0.40), OpenMx (>= 2.2.6), R (>= 2.14.0)
URL: https://github.com/jpritikin/ifaTools
Packaged: 2015-07-21 06:15:47 UTC; joshua
Author: Joshua N. Pritikin [cre, aut]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-21 08:37:27

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New package convoSPAT with initial version 0.1
Package: convoSPAT
Type: Package
Title: Convolution-Based Nonstationary Spatial Modeling
Version: 0.1
Date: 2015-07-20
Authors@R: person("Mark D.", "Risser", email = "markdrisser@gmail.com", role = c("aut", "cre"))
Description: Fits convolution-based nonstationary Gaussian process models to point-referenced spatial data. The nonstationary covariance function allows the user to specify the underlying correlation structure and which spatial dependence parameters should be allowed to vary over space: the anisotropy, nugget variance, and process variance. The parameters are estimated via maximum likelihood, using a local likelihood approach. Also provided are functions to fit stationary spatial models for comparison, calculate the kriging predictor and standard errors, and create various plots to visualize nonstationarity.
Depends: R (>= 3.1.2)
License: MIT + file LICENSE
LazyData: TRUE
Imports: stats, graphics, ellipse, fields, geoR, MASS, plotrix, StatMatch
URL: http://github.com/markdrisser/convoSPAT
Packaged: 2015-07-20 22:06:53 UTC; markdrisser
Author: Mark D. Risser [aut, cre]
Maintainer: Mark D. Risser <markdrisser@gmail.com>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-21 07:53:15

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Mon, 20 Jul 2015

New package timedelay with initial version 1.0.0
Package: timedelay
Version: 1.0.0
Date: 2015-05-21
Title: Time Delay Estimation for Stochastic Time Series of Gravitationally Lensed Quasars
Author: Hyungsuk Tak, Kaisey Mandel, David A. van Dyk, Vinay L. Kashyap, Xiao-Li Meng, and Aneta Siemiginowska
Maintainer: Hyungsuk Tak <hyungsuk.tak@gmail.com>
Depends: R (>= 2.2.0)
Imports: stats
Description: We provide a toolbox to estimate the time delay between the brightness time series of gravitationally lensed quasar images via Bayesian and profile likelihood approaches. The model is based on a state-space representation for irregularly observed time series data generated from a latent continuous-time Ornstein-Uhlenbeck process. Our Bayesian method adopts scientifically motivated hyper-prior distributions and a Metropolis-Hastings within Gibbs sampler, producing posterior samples of the model parameters that include the time delay. A profile likelihood of the time delay is a simple approximation to the marginal posterior distribution of the time delay. Both Bayesian and profile likelihood approaches complement each other, producing almost identical results; the Bayesian way is more principled but the profile likelihood is easier to implement.
License: GPL-2
Packaged: 2015-07-20 02:19:49 UTC; hyungsuktak
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-20 11:18:19

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Sun, 19 Jul 2015

New package SDR with initial version 0.6.0.0
Package: SDR
Type: Package
Title: Subgroup Discovery Algorithms for R
Version: 0.6.0.0
Date: 2015-06-14
Authors@R: c(person("Angel M.", "Garcia", email = "amgv0009@red.ujaen.es", role = c("aut", "cre")), person("Pedro", "Gonzalez", email = "pglez@ujaen.es", role = c("aut", "cph")), person("Cristobal J.", "Carmona", email = "ccarmona@ujaen.es", role = c("aut", "cph")), person("Francisco", "Charte", email = "francisco@fcharte.com", role = "ctb") )
Maintainer: Angel M. Garcia <amgv0009@red.ujaen.es>
Description: Implementation of some algorithms for the data mining task called "subgroup discovery" without package dependencies. It also provide a Shiny App for make the analysis easier. The algorithms works with data sets provided in KEEL format. If you want more information about this format, please refer to < http://www.keel.es > .
URL: https://github.com/aklxao2/SDR
Depends: R (>= 3.0.0)
License: LGPL (>= 3) | file LICENSE
LazyData: TRUE
Imports: methods, parallel, stats, shiny (>= 0.11)
Suggests: knitr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-07-19 16:01:43 UTC; a
Author: Angel M. Garcia [aut, cre], Pedro Gonzalez [aut, cph], Cristobal J. Carmona [aut, cph], Francisco Charte [ctb]
Repository: CRAN
Date/Publication: 2015-07-19 19:51:06

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New package anoint with initial version 1.4
Package: anoint
Type: Package
Title: Analysis of Interactions
Version: 1.4
Date: 2015-07-10
Author: Ravi Varadhan <rvaradhan@jhmi.edu> and Stephanie Kovalchik
Maintainer: Stephanie Kovalchik <s.a.kovalchik@gmail.com>
Description: The tools in this package are intended to help researchers assess multiple treatment-covariate interactions with data from a parallel-group randomized controlled clinical trial.
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 2.13.0), stats, survival, MASS, graphics, grid
Imports: methods, glmnet
NeedsCompilation: no
Packaged: 2015-07-19 08:25:13 UTC; skovalch
Repository: CRAN
Date/Publication: 2015-07-19 19:44:25

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New package viridis with initial version 0.1
Package: viridis
Type: Package
Title: Matplotlib Default Color Map
Version: 0.1
Date: 2015-07-16
Author: Simon Garnier <garnier@njit.edu>
Maintainer: Simon Garnier <garnier@njit.edu>
Description: Port of the new Matplotlib default color map ('viridis') to R. This color map is designed in such a way that it will analytically be perfectly perceptually-uniform, both in regular form and also when converted to black-and-white. It is also designed to be perceived by readers with the most common form of color blindness.
License: MIT + file LICENSE
LazyData: TRUE
Encoding: UTF-8
Depends: R (>= 2.10)
Imports: stats (>= 3.2.1), grDevices (>= 3.2.1)
Suggests: ggplot2 (>= 1.0.1), hexbin (>= 1.27.0)
NeedsCompilation: no
Packaged: 2015-07-19 00:01:02 UTC; simongarnier
Repository: CRAN
Date/Publication: 2015-07-19 09:39:03

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New package popprxl with initial version 0.1
Package: popprxl
Type: Package
Title: Read GenAlEx Files Directly from Excel
Version: 0.1
Date: 2015-07-18
Authors@R: c(person(c("Zhian", "N."), "Kamvar", role = c("cre", "aut"), email = "kamvarz@science.oregonstate.edu"))
Maintainer: Zhian N. Kamvar <kamvarz@science.oregonstate.edu>
Encoding: UTF-8
Description: A wrapper for 'readxl' to read GenAlEx data directly into 'poppr'.
Depends: poppr (>= 2.0.1)
Imports: readxl, utils
License: GPL-3
LazyData: TRUE
Suggests: testthat
NeedsCompilation: no
Packaged: 2015-07-19 03:16:04 UTC; zhian
Author: Zhian N. Kamvar [cre, aut]
Repository: CRAN
Date/Publication: 2015-07-19 09:39:01

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New package nordklimdata1 with initial version 1.2
Package: nordklimdata1
Type: Package
Title: Dataset for Climate Analysis with Data from the Nordic Region
Version: 1.2
Encoding: UTF-8
Authors@R: c(person(given = "Heikki", family = "Tuomenvirta", role = "aut"), person(given = "Achim", family = "Drebs", role = "aut"), person(given = "Eirik", family = "Førland", role = "aut"), person(given = "Ole", family = "Einar Tveito", role = "aut"), person(given = "Hans", family = "Alexandersson", role = "aut"), person(given = "Ellen", family = "Vaarby Laursen", role = "aut"), person(given = "Trausti", family = "Jónsson", role = "aut"), person(given = "Jose", family = "Gama", role = "cre",email = "rxprtgama@gmail.com"))
Description: The Nordklim dataset 1.0 is a unique and useful achievement for climate analysis. It includes observations of twelve different climate elements from more than 100 stations in the Nordic region, in time span over 100 years. The project contractors were NORDKLIM/NORDMET on behalf of the National meteorological services in Denmark (DMI), Finland (FMI), Iceland (VI), Norway (DNMI) and Sweden (SMHI).
License: GPL (>= 3)
Depends: R (>= 2.10)
Author: Heikki Tuomenvirta [aut], Achim Drebs [aut], Eirik Førland [aut], Ole Einar Tveito [aut], Hans Alexandersson [aut], Ellen Vaarby Laursen [aut], Trausti Jónsson [aut], Jose Gama [cre]
Maintainer: Jose Gama <rxprtgama@gmail.com>
Repository: CRAN
Repository/R-Forge/Project: nordklimdata1
Repository/R-Forge/Revision: 16
Repository/R-Forge/DateTimeStamp: 2015-07-18 16:22:57
Date/Publication: 2015-07-19 09:38:58
NeedsCompilation: no
Packaged: 2015-07-18 16:45:18 UTC; rforge

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Sat, 18 Jul 2015

New package SigTree with initial version 1.10.2
Package: SigTree
Type: Package
Title: Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree
Version: 1.10.2
Date: 2015-07-18
Author: John R. Stevens and Todd R. Jones
Maintainer: John R. Stevens <john.r.stevens@usu.edu>
Description: Takes a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip labels and p-values, and determines the significance of the branches (families of p-values) and plots the tree with colored branches (corresponding to families) according to their levels of significance. Also produces a CSV file with the p-values of all of the branches as well as which tips belong to which branches. Finally, it exports a file that can be opened in FigTree that produces a colored plot (colored branches according to their significance of corresponding groups of p-values) with p-value annotations.
Imports: ape, phylobase, phyext2, RColorBrewer, phyloseq, graphics, utils, stats
Repository: CRAN
License: GPL-3
NeedsCompilation: yes
Packaged: 2015-07-18 21:51:22 UTC; John
Date/Publication: 2015-07-19 00:51:30

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New package mvtboost with initial version 0.2.1
Package: mvtboost
Type: Package
Title: Tree Boosting for Multivariate Outcomes
Version: 0.2.1
Date: 2015-07-17
Author: Patrick Miller [aut, cre]
Maintainer: Patrick Miller <patrick.mil10@gmail.com>
Description: Fits a multivariate model of decision trees for multiple, continuous outcome variables. A model for each outcome variable is fit separately, selecting predictors that explain that explain covariance in multiple outcomes. Package is built on top of 'gbm'.
License: GPL (>= 2) | file LICENSE
URL: https://github.com/patr1ckm/mvtboost
BugReports: https://github.com/patr1ckm/mvtboost/issues
Depends: R (>= 3.0.0)
Suggests: testthat, plyr, MASS, parallel, lars, ggplot2, knitr, rmarkdown
Imports: gbm, RColorBrewer, stats, graphics, grDevices, utils,
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-07-17 20:08:09 UTC; pmille13
Repository: CRAN
Date/Publication: 2015-07-18 19:26:23

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New package RAHRS with initial version 1.0.2
Package: RAHRS
Type: Package
Title: Data Fusion Filters for Attitude Heading Reference System (AHRS) with Several Variants of the Kalman Filter and the Mahoney and Madgwick Filters
Version: 1.0.2
Encoding: UTF-8
Authors@R: c(person(given = "Jose", family = "Gama", role = c("aut","cre","trl"),email = "rxprtgama@gmail.com"), person(given = "Vlad", family = "Maximov", role = "aut"), person(given = "Sebastian", family = "O.H. Madgwick", role = "aut"), person(given = "Alain", family = "Barraud", role = "ctb"))
Description: Data fusion filters for Attitude Heading Reference System (AHRS) based on Vlad Maximov's GyroLib AHRS library (quaternion based linearized/extended/unscented Kalman filter, Euler based LKF, gyro-free with vector matching, SVD calibration and EKF calibration), Sebastian O.H. Madgwick AHRS algorithms and Sebastian O.H. Madgwick implementation of Mayhony et al AHRS algorithm.
License: GPL (>= 3)
LazyLoad: yes
LazyData: yes
Depends: R (>= 2.10), pracma, RSpincalc (>= 1.0.1)
Author: Jose Gama [aut, cre, trl], Vlad Maximov [aut], Sebastian O.H. Madgwick [aut], Alain Barraud [ctb]
Maintainer: Jose Gama <rxprtgama@gmail.com>
Repository: CRAN
Repository/R-Forge/Project: rahrs
Repository/R-Forge/Revision: 15
Repository/R-Forge/DateTimeStamp: 2015-07-18 10:30:57
Date/Publication: 2015-07-18 17:36:39
NeedsCompilation: yes
Packaged: 2015-07-18 10:45:11 UTC; rforge

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New package rstan with initial version 2.7.0-1
Package: rstan
Type: Package
Title: R Interface to Stan
Version: 2.7.0-1
Date: 2015-07-17
Authors@R: c(person("Jiqiang", "Guo", email = "guojq28@gmail.com", role = "aut"), person("Daniel", "Lee", role = "ctb"), person("Ben", "Goodrich", email = "benjamin.goodrich@columbia.edu", role = c("cre", "aut")), person("Joel", "de Guzman", role = "ctb"), person("Eric", "Niebler", role = "ctb"), person("Thomas", "Heller", role = "ctb"), person("John", "Fletcher", role = "ctb"))
Description: User-facing R functions are provided by this package to parse, compile, test, estimate, and analyze Stan models by accessing the header-only Stan library provided by the 'StanHeaders' package. The Stan project develops a probabilistic programming language that implements full Bayesian statistical inference via Markov Chain Monte Carlo and (optionally penalized) maximum likelihood estimation via optimization. In both cases, automatic differentiation is used to quickly and accurately evaluate gradients without burdening the user with the need to derive the partial derivatives.
License: GPL (>= 3)
NeedsCompilation: yes
Imports: stats4
Depends: R (>= 3.0.2), Rcpp (>= 0.11.0), utils, inline, methods
LinkingTo: Rcpp, RcppEigen, BH (>= 1.58), StanHeaders (>= 2.7.0)
Suggests: RUnit, RcppEigen, BH (>= 1.58), StanHeaders (>= 2.7.0), parallel, KernSmooth, RCurl, loo
URL: http://mc-stan.org
Packaged: 2015-07-17 18:12:01 UTC; goodrich
Author: Jiqiang Guo [aut], Daniel Lee [ctb], Ben Goodrich [cre, aut], Joel de Guzman [ctb], Eric Niebler [ctb], Thomas Heller [ctb], John Fletcher [ctb]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Repository: CRAN
Date/Publication: 2015-07-18 17:00:30

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New package paco with initial version 0.2.1
Package: paco
Version: 0.2.1
Date: 2015-07-13
Title: Procrustes Application to Cophylogenetic Analysis
Description: Procrustes analyses to infer co-phylogenetic matching between pairs of (ultrametric) phylogenetic trees.
Author: Juan Antonio Balbuena <ja.balbuena@uv.es>, Timothee Poisot <tim@poisotlab.io>, Matthew Hutchinson <matthewhutchinson15@gmail.com>, Fernando Cagua <fernando@cagua.co>
Maintainer: Timothee Poisot <tim@poisotlab.io>
Depends: R (>= 3.0.0)
Imports: vegan (>= 2.2-0), plyr
Suggests: ape, doMC
License: MIT + file LICENSE
URL: http://www.uv.es/cophylpaco/
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-18 17:00:22

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New package lpbrim with initial version 1.0.0
Package: lpbrim
Version: 1.0.0
Date: 2015-07-17
Title: LP-BRIM Bipartite Modularity
Author: Timothee Poisot <tim@poisotlab.io>, Daniel B Stouffer <daniel.stouffer@canterbury.ac.nz>
Maintainer: Timothee Poisot <tim@poisotlab.io>
Depends: R (>= 2.12.0)
Imports: Matrix, plyr, RColorBrewer
Suggests: doMC
Description: Optimization of bipartite modularity using LP-BRIM (Label propagation followed by Bipartite Recursively Induced Modularity).
License: BSD_2_clause + file LICENSE
URL: http://poisotlab.io/software
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-18 17:00:13

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Fri, 17 Jul 2015

New package TCGA2STAT with initial version 1.0
Package: TCGA2STAT
Type: Package
Title: TCGA to Statistical Analysis
Version: 1.0
Date: 2015-07-14
Author: Ying-Wooi Wan, Genevera I. Allen, Matthew L. Anderson, Zhandong Liu
Maintainer: Ying-Wooi Wan <yingwoow@bcm.edu>
Depends: R (>= 3.0.0)
Imports: XML, parallel, CNTools
Description: Automatically downloads and processes TCGA genomics and clinical data into a format convenient for statistical analyses in the R environment.
License: GPL-2
URL: http://www.liuzlab.org/TCGA2STAT/
LazyLoad: true
Packaged: 2015-07-17 16:42:45 UTC; wooi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-17 19:58:09

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New package phyext2 with initial version 0.0.3
Package: phyext2
Type: Package
Title: An Extension (for Package 'SigTree') of Some of the Classes in Package 'phylobase'
Version: 0.0.3
Date: 2015-07-16
Author: J. Conrad Stack
Maintainer: John R. Stevens <john.r.stevens@usu.edu>
Imports: methods, phylobase, ape, grid, stats
Description: Based on (but not identical to) the no-longer-maintained package 'phyext', provides enhancements to 'phylobase' classes, specifically for use by package 'SigTree'; provides classes and methods which help users manipulate branch-annotated trees (as in 'SigTree'); also provides support for a few other extra features.
License: GPL-3
NeedsCompilation: no
Packaged: 2015-07-16 18:07:42 UTC; John
Repository: CRAN
Date/Publication: 2015-07-17 20:32:57

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New package flows with initial version 1.0
Package: flows
Type: Package
Title: Flow Selection and Analysis
Version: 1.0
Date: 2015-07-15
Authors@R: c( person("Timothée", "Giraud", email = "timothee.giraud@ums-riate.fr", role = c("cre","aut")), person("Laurent", "Beauguitte", email = "laurent.beauguitte@univ-rouen.fr", role = c("aut")), person("Marianne", "Guérois", email = "guerois@parisgeo.cnrs.fr", role = c("ctb")))
Description: Selections on flow matrices, statistics on selected flows, map and graph visualisations.
License: GPL-3
LazyData: TRUE
Depends: R (>= 2.10)
Imports: reshape2, igraph, sp, graphics, stats
Suggests: knitr
URL: https://github.com/rCarto/flows
BugReports: https://github.com/rCarto/flows/issues
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2015-07-17 12:23:28 UTC; tg
Author: Timothée Giraud [cre, aut], Laurent Beauguitte [aut], Marianne Guérois [ctb]
Maintainer: Timothée Giraud <timothee.giraud@ums-riate.fr>
Repository: CRAN
Date/Publication: 2015-07-17 15:22:49

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New package WufooR with initial version 0.5.5
Package: WufooR
Type: Package
Title: R Wrapper for the 'Wufoo.com' - The Form Building Service
Description: Allows form managers to download entries from their respondents using Wufoo JSON API. Additionally, the Wufoo reports - when public - can be also acquired programmatically. Note that building new forms within this package is not supported.
Version: 0.5.5
Date: 2015-07-17
Authors@R: c( person("John", "Malc", email = "cincenko@outlook.com", role = c("aut", "cre"), comment = "@dmpe") )
Depends: R (>= 3.2.0)
Imports: httr (>= 1.0.0), jsonlite (>= 0.9.16), dplyr (>= 0.4.2)
Suggests: roxygen2 (>= 4.1.0), knitr (>= 1.10.5), testthat (>= 0.10.0)
VignetteBuilder: knitr
License: Apache License 2.0
URL: https://github.com/dmpe/wufoor
BugReports: https://github.com/dmpe/wufoor/issues
NeedsCompilation: no
Packaged: 2015-07-17 09:05:22 UTC; jm
Author: John Malc [aut, cre] (@dmpe)
Maintainer: John Malc <cincenko@outlook.com>
Repository: CRAN
Date/Publication: 2015-07-17 12:44:27

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New package RSpincalc with initial version 1.0.2
Package: RSpincalc
Type: Package
Title: Conversion Between Attitude Representations of DCM, Euler Angles, Quaternions, and Euler Vectors
Version: 1.0.2
Encoding: UTF-8
Authors@R: c(person(given = "Jose", family = "Gama", role = c("aut","cre"),email = "rxprtgama@gmail.com"), person(given = "John", family = "Fuller", role = c("aut","cph")), person(given = "Paolo", family = "Leva", role = c("aut","cph")))
Description: Conversion between attitude representations: DCM, Euler angles, Quaternions, and Euler vectors. Plus conversion between 2 Euler angle set types (xyx, yzy, zxz, xzx, yxy, zyz, xyz, yzx, zxy, xzy, yxz, zyx). Fully vectorized code, with warnings/errors for Euler angles (singularity, out of range, invalid angle order), DCM (orthogonality, not proper, exceeded tolerance to unity determinant) and Euler vectors(not unity). Also quaternion and other useful functions. Based on SpinCalc by John Fuller and SpinConv by Paolo de Leva.
License: GPL (>= 3)
Author: Jose Gama [aut, cre], John Fuller [aut, cph], Paolo Leva [aut, cph]
Maintainer: Jose Gama <rxprtgama@gmail.com>
Repository: CRAN
Repository/R-Forge/Project: rspincalc
Repository/R-Forge/Revision: 16
Repository/R-Forge/DateTimeStamp: 2015-07-16 22:34:34
Date/Publication: 2015-07-17 12:51:32
NeedsCompilation: no
Packaged: 2015-07-16 22:45:13 UTC; rforge

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New package EDFIR with initial version 1.0
Package: EDFIR
Title: Estimating Discrimination Factors
Version: 1.0
Date: 2015-07-15
Author: Alex Bond and Robert Robere
Depends: R (>= 2.15.3), lpSolve, geometry, vertexenum, MASS
Maintainer: Robert Robere <robere@cs.toronto.edu>
Description: Functions for reading in data sets of prey and predator isotopic measurements and producing estimates for discrimination factors.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-07-17 05:15:14 UTC; robere
Repository: CRAN
Date/Publication: 2015-07-17 12:44:21

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Thu, 16 Jul 2015

New package stmBrowser with initial version 1.0
Package: stmBrowser
Type: Package
Title: Structural Topic Model Browser
Version: 1.0
Date: 2015-07-02
Author: Michael K. Freeman, Jason Chuang, Margaret E. Roberts, Brandon M. Stewart and Dustin Tingley
Maintainer: Margaret E. Roberts <meroberts@ucsd.edu>
Description: This visualization allows users to interactively explore the relationships between topics and the covariates estimated from the stm package in R.
Imports: rjson, stm, jsonlite, httr, utils
License: MIT + file LICENSE
URL: http://structuraltopicmodel.com
NeedsCompilation: no
Packaged: 2015-07-15 20:28:07 UTC; jeffrey
Repository: CRAN
Date/Publication: 2015-07-16 23:55:43

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New package webreadr with initial version 0.3.0
Package: webreadr
Type: Package
Title: Tools for Reading Formatted Access Log Files
Version: 0.3.0
Date: 2015-07-13
Author: Oliver Keyes
Maintainer: Oliver Keyes <ironholds@gmail.com>
Description: R is used by a vast array of people for a vast array of purposes - including web analytics. This package contains functions for consuming and munging various common forms of request log, including the Common and Combined Web Log formats and AWS logs.
License: MIT + file LICENSE
Suggests: iptools, urltools, knitr, testthat
LinkingTo: Rcpp
Imports: Rcpp, readr
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2015-07-16 14:37:13 UTC; ironholds
Repository: CRAN
Date/Publication: 2015-07-16 17:29:10

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New package monogeneaGM with initial version 1.0
Package: monogeneaGM
Version: 1.0
Date: 2015-07-16
Title: Geometric Morphometric Analysis of Monogenean Anchors
Author: Tsung Fei Khang
Maintainer: Tsung Fei Khang <tfkhang@um.edu.my>
Depends: R (>= 3.0.3)
Imports: ape, cluster, circular, geomorph, gplots, phytools, rgl
ZipData: no
Description: Geometric morphometric and evolutionary biology analyses of anchor shape from four-anchored monogeneans.
License: GPL (>= 2)
Packaged: 2015-07-16 03:47:00 UTC; TFKhang
Repository: CRAN
Date/Publication: 2015-07-16 17:29:06
NeedsCompilation: no
LazyData: true

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New package dbscan with initial version 0.9-0
Package: dbscan
Version: 0.9-0
Date: 2015-7-15
Title: Density Based Clustering of Applications with Noise (DBSCAN)
Authors@R: c(person("Michael", "Hahsler", role = c("aut", "cre", "cph"), email = "mhahsler@lyle.smu.edu"), person("Sunil", "Arya", role = c("ctb", "cph")), person("David", "Mount", role = c("ctb", "cph")))
Copyright: ANN library is copyright University of Maryland and Sunil Arya and David Mount.
Description: A fast reimplementation of the DBSCAN clustering algorithm using the kd-tree data structure for speedup.
Imports: Rcpp
Suggests: fpc, microbenchmark
License: GPL (>= 2)
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2015-07-16 13:44:55 UTC; hahsler
Author: Michael Hahsler [aut, cre, cph], Sunil Arya [ctb, cph], David Mount [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Repository: CRAN
Date/Publication: 2015-07-16 16:08:03

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New package weatherr with initial version 0.1
Package: weatherr
Type: Package
Title: Tools for Handling and Scrapping Instant Weather Forecast Feeds
Version: 0.1
Date: 2015-07-15
Author: Stan Yip [aut, cre]
Maintainer: Stan Yip <stanyip101@gmail.com>
Description: Handle instant weather forecasts and geographical information. It combines multiple sources of information to obtain instant weather forecasts.
Depends: ggmap, lubridate, RJSONIO, XML
License: GPL (>= 2)
Packaged: 2015-07-16 02:55:23 UTC; STANLEYCYYIP
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-16 14:24:43

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New package svgPanZoom with initial version 0.2.0
Package: svgPanZoom
Title: R 'Htmlwidget' to Add Pan and Zoom to Almost any R Graphic
Version: 0.2.0
Authors@R: c( person( "Anders", "Riutta et. al.", role = c("aut", "cph"), comment = "svg-pan-zoom.js BSD-licensed library in htmlwidgets/lib, https://github.com/ariutta/svg-pan-zoom" ), person( "Kent", "Russell", role = c("aut", "cre"), comment = "R interface to svg-pan-zoom.js", email = "kent.russell@timelyportfolio.com" ) )
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Description: This 'htmlwidget' provides pan and zoom interactivity to R graphics, including 'base', 'lattice', and 'ggplot2'. The interactivity is provided through the 'svg-pan-zoom.js' library. Various options to the widget can tailor the pan and zoom experience to nearly any user desire.
URL: https://github.com/timelyportfolio/svgPanZoom
BugReports: https://github.com/timelyportfolio/svgPanZoom/issues
License: MIT + file LICENSE
Depends: R (>= 3.1.2)
Imports: htmlwidgets (>= 0.3.2)
Suggests: gridSVG, htmltools, knitr, SVGAnnotation, XML
Packaged: 2015-07-15 16:05:40 UTC; kent
Author: Anders Riutta et. al. [aut, cph] (svg-pan-zoom.js BSD-licensed library in htmlwidgets/lib, https://github.com/ariutta/svg-pan-zoom), Kent Russell [aut, cre] (R interface to svg-pan-zoom.js)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-07-16 14:24:41

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New package efflog with initial version 1.0
Package: efflog
Title: The Causal Effects for a Causal Loglinear Model
Description: Fitting a causal loglinear model and calculating the causal effects for a causal loglinear model with the multiplicative interaction or without the multiplicative interaction, obtaining the natural direct, indirect and the total effect. It calculates also the cell effect, which is a new interaction effect.
Version: 1.0
Author: Gloria Gheno [aut, cre]
Maintainer: Gloria Gheno <gloriagheno@libero.it>
Date: 2015-07-14
Depends: stats, R(>= 2.10.1)
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-07-16 00:39:32 UTC; Gloria
Repository: CRAN
Date/Publication: 2015-07-16 14:24:26

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New package ACDm with initial version 1.0.2
Package: ACDm
Version: 1.0.2
Date: 2015-07-16
Title: Tools for Autoregressive Conditional Duration Models
Author: Markus Belfrage
Depends: R(>= 2.10.0)
Imports: plyr, dplyr, ggplot2, Rsolnp, zoo, graphics
Suggests: optimx
Maintainer: Markus Belfrage <markus.belfrage@gmail.com>
Description: Package for Autoregressive Conditional Duration (ACD, Engle and Russell, 1998) models. Creates trade, price or volume durations from transactions (tic) data, performs diurnal adjustments, fits various ACD models and tests them.
LazyData: yes
NeedsCompilation: yes
License: GPL (>= 2)
Packaged: 2015-07-16 08:44:13 UTC; Markus
Repository: CRAN
Date/Publication: 2015-07-16 14:24:13

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Wed, 15 Jul 2015

New package UpSetR with initial version 0.0.4
Package: UpSetR
Title: Visualization of Intersecting Sets
Version: 0.0.4
Date: 2015-07-13
Authors@R: c( person("Conway", "Jake", email = "jake_conway@student.uml.edu", role = "cre"), person("Gehlenborg", "Nils", email = "nils@hms.harvard.edu", role = "aut"))
Description: Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks.
Depends: R (>= 2.5)
Imports: ggplot2, grid, gridExtra, plyr, utils, stats, methods, grDevices
License: MIT + file LICENSE
LazyData: true
NeedsCompilation: no
Packaged: 2015-07-15 14:27:29 UTC; jakeconway
Author: Conway Jake [cre], Gehlenborg Nils [aut]
Maintainer: Conway Jake <jake_conway@student.uml.edu>
Repository: CRAN
Date/Publication: 2015-07-16 00:35:51

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New package SwarmSVM with initial version 0.1
Package: SwarmSVM
Title: Ensemble Learning Algorithms Based on Support Vector Machines
Version: 0.1
Date: 2015-05-27
Author: Tong He <hetong007@gmail.com>, Aydin Demircioglu <aydin.demircioglu@ini.ruhr-uni-bochum.de>
Maintainer: Tong He <hetong007@gmail.com>
Description: Three ensemble learning algorithms based on support vector machines. They all train support vector machines on subset of data and combine the result.
Depends: R (>= 3.0.2)
Imports: e1071, LiblineaR, Matrix, SparseM, kernlab, methods, checkmate (>= 1.6.0), BBmisc
License: GPL-2
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
Packaged: 2015-07-15 19:36:42 UTC; hetongh
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-07-15 23:50:15

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