CRANberries

CRANberries aggregates information about new and and updated packages from the
CRAN network for R available as this html version and a corresponding RSS feed.
Created and provided by Dirk Eddelbuettel.

Tue, 09 Feb 2010

New package stoichcalc with initial version 1.1-0
Package: stoichcalc
Version: 1.1-0
Title: R Functions for Solving Stoichiometric Equations
Date: 2010-02-08
Author: Peter Reichert
Maintainer: Peter Reichert
Description: Given a list of substance compositions, a list of substances involved in a process, and a list of constraints in addition to mass conservation of elementary constituents, the package contains functions to build the substance composition matrix, to analyze the uniqueness of process stoichiometry, and to calculate stoichiometric coefficients if process stoichiometry is unique (see Reichert, P. and Schuwirt, N., A generic framework for deriving process stoichiometry in environmental models, Environmental Modelling and Software, in review, 2010 for more details).
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-02-08 20:50:25 UTC; Peter
Repository: CRAN
Date/Publication: 2010-02-09 09:16:59

More information about stoichcalc at CRAN
Path: /cran/new | permanent link

New package geosphere with initial version 1.0.0
Package: geosphere
Type: Package
Title: Spherical Trigonometry
Version: 1.0.0
Date: 6-Febrary-2010
Suggests: sp
Author: Robert J. Hijmans, Ed Williams, Chris Vennes
Maintainer: Robert J. Hijmans
Description: Spherical trigonometry for geographic applications
License: GPL
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: geosphere
Repository/R-Forge/Revision: 25
Date/Publication: 2010-02-09 09:16:39
Packaged: 2010-02-07 21:12:10 UTC; rforge

More information about geosphere at CRAN
Path: /cran/new | permanent link

Mon, 08 Feb 2010

New package grofit with initial version 1.0
Package: grofit
Type: Package
Title: The package was developed to fit fit many growth curves obtained under different conditions.
Version: 1.0
Date: 2010-02-04
Author: Matthias Kahm, Maik Kschischo
Maintainer: Matthias Kahm
Description: The package was developd to fit fit many growth curves obtained under different conditions in order to derive a conclusive dose-repsonse curve, for instance for a compound that potentially affects growth. grofit fits data to different parametric models (function gcFitModel) and in addition provides a model free spline fit (function gcFitSpline) to circumvent systematic errors that might occur within application of parametric methods.
License: GPL-2
LazyLoad: yes
Packaged: 2010-02-08 16:13:37 UTC; kahm
Repository: CRAN
Date/Publication: 2010-02-08 18:37:13

More information about grofit at CRAN
Path: /cran/new | permanent link

Sun, 07 Feb 2010

New package stam with initial version 0.0-1
Package: stam
Version: 0.0-1
Date: 2010-01-01
Depends: R (>= 2.10.0),np,sp
Title: Spatio-Temporal Analysis and Modelling
Author: Zhijie Zhang
Maintainer: Zhijie Zhang
Description: stam is an evolving package that target on the various methods to conduct Spatio-Temporal Analysis and Modelling,including Exploratory Spatio-Temporal Analysis and Inferred Spatio-Temporal Modelling.
License: GPL (>= 2)
Packaged: 2010-02-07 17:51:51 UTC; Administrator
Repository: CRAN
Date/Publication: 2010-02-07 19:27:03

More information about stam at CRAN
Path: /cran/new | permanent link

Sat, 06 Feb 2010

New package pamctdp with initial version 0.1.2
Package: pamctdp
Version: 0.1.2
Date: 04-02-10
Title: Principal Axes Methods for Contingency Tables with Partition Structures on Rows and Columns
Author: Campo Elias Pardo
Maintainer: Campo Elias Pardo
Depends: R (>= 2.7.0), ade4, xtable, FactoClass
Description: Correspondence Analysis of Contingency Tables with Simple and Double Structures Superimposed Representations, Intra Blocks Internal Corresponde Analysis, MFACT-DP.
License: GPL (>= 2)
URL: http://www.docentes.unal.edu.co/cepardot
Encoding: latin1
Packaged: 2010-02-05 19:51:54 UTC; cepardot
Repository: CRAN
Date/Publication: 2010-02-06 14:52:17

More information about pamctdp at CRAN
Path: /cran/new | permanent link

New package PropCIs with initial version 0.1-4
Package: PropCIs
Type: Package
Title: Computes confidence intervals for single proportions, for differences in proportions, for an odds-ratio and for the relative risk in a 2x2 table
Version: 0.1-4
Date: 2010-02-06
Author: Ralph Scherer
Maintainer: Ralph Scherer
Description: Computes confidence intervals for single proportions and confidence intervals for differences in proportions in a 2x2 table
License: GPL
LazyLoad: yes
Packaged: 2010-02-06 09:02:14 UTC; ralph
Repository: CRAN
Date/Publication: 2010-02-06 14:32:20

More information about PropCIs at CRAN
Path: /cran/new | permanent link

Fri, 05 Feb 2010

New package RFinanceYJ with initial version 0.0.7
Package: RFinanceYJ
Type: Package
Title: RFinanceYJ
Version: 0.0.7
Date: 2010-01-21
Author: Yohei Sato, Nobuaki Oshiro
Maintainer: Yohei Sato
Description: Japanese stock market from Yahoo!-finance-Japan
License: BSD
LazyLoad: yes
Depends: XML
Packaged: 2010-02-05 13:46:57 UTC; yokkuns
Repository: CRAN
Date/Publication: 2010-02-05 17:18:12

More information about RFinanceYJ at CRAN
Path: /cran/new | permanent link

New package rpsychi with initial version 0.0
Package: rpsychi
Title: Statistics for psychiatric research
Version: 0.0
Date: 2010-02-14
Author: Yasuyuki Okumura
Maintainer: Yasuyuki Okumura
Depends: doBy, gtools
Description: The rpsychi offers a number of functions for psychiatry, psychiatric nursing, clinical psychology. Functions are primarily for statistical significance testing using published work. For example, you can conduct a factorial analysis of variance (ANOVA), which requires only the mean, standard deviation, and sample size for each cell, rather than the individual data. This package covers fundamental statistical tests such as t-test, chi-square test, analysis of variance, and multiple regression analysis. With some exceptions, you can obtain effect size and its confidence interval. These functions help you to obtain effect size from published work, and then to conduct a priori power analysis or meta-analysis, even if a researcher do not report effect size in a published work.
License: GPL (>= 2)
URL: http://blue.zero.jp/yokumura/
LazyLoad: yes
Encoding: UTF-8
Packaged: 2010-02-05 10:20:41 UTC; Any
Repository: CRAN
Date/Publication: 2010-02-05 11:52:52

More information about rpsychi at CRAN
Path: /cran/new | permanent link

New package dae with initial version 1.0-1
Package: dae
Version: 1.0-1
Date: 2010-02-05
Title: Functions useful in the design and ANOVA of experiments
Author: Chris Brien .
Maintainer: Chris Brien
Depends: R (>= 2.10.0), lattice, methods
Description: This package includes a number of functions that aid in generating experimental designs and in examining their canonical efficiency factors. It also includes functions that facilitate diagnostic checking after an aov, especially when the Error function has been used in the call to aov.
License: GPL (>= 2)
Lazyload: yes
URL: http://chris.brien.name
Packaged: 2010-02-05 10:40:46 UTC; briencj
Repository: CRAN
Date/Publication: 2010-02-05 11:52:39

More information about dae at CRAN
Path: /cran/new | permanent link

Thu, 04 Feb 2010

New package ipw with initial version 1.0
Package: ipw
Version: 1.0
Date: 2010-02-04
Title: Estimate inverse probability weights.
Author: Willem M. van der Wal
Maintainer: Willem M. van der Wal
Depends: R (>= 2.0.1), boot, geepack, MASS, nlme, nnet, survival
Description: Estimate inverse probability weights. These are typically used to perform inverse probability weighting (IPW) to fit a marginal structural model (MSM), to estimate causal effects from observational data. Both data from point treatment situations and longitudinal studies can be used.
Encoding: latin1
License: GPL (>= 2)
Packaged: 2010-02-04 18:25:23 UTC; wwal
Repository: CRAN
Date/Publication: 2010-02-04 19:40:55

More information about ipw at CRAN
Path: /cran/new | permanent link

New package powerMediation with initial version 0.0.6
Package: powerMediation
Version: 0.0.6
Date: 2010-02-03
Title: Power/Sample size calculation for mediation analysis
Author: Weiliang Qiu
Maintainer: Weiliang Qiu
Depends: R (>= 2.9.0), stats
Description: The package contains functions for calculating power, sample size, and minimal detectable mediation effect for testing mediation effect (Sobel's test) of a simple mediation model with continuous response, and only one predictor and only one mediator. The package also contains functions for calculating power, sample size, and minimal detectable slope for testing the slope in a simple linear regression (only one predictor).
License: GPL (>= 2)
Repository: CRAN
Packaged: 2010-02-04 02:52:35 UTC; stwxq
Date/Publication: 2010-02-04 08:46:56

More information about powerMediation at CRAN
Path: /cran/new | permanent link

New package MAc with initial version 1.0
Package: MAc
Type: Package
Title: Meta-Analysis for Correlations
Version: 1.0
Date: 2010-02-01
Author: AC Del Re & William T. Hoyt
Maintainer: AC Del Re
Description: This is an integrated package for conducting all required steps in a meta-analysis with correlations. It uses recommended procedures as described in Cooper, Hedges, & Valentine's Handbook of Research Synthesis and Meta-Analysis (2009).
Depends: R (>= 2.10.1), plyr, ggplot2, psych
License: GPL-2
Packaged: 2010-02-04 04:06:28 UTC; User
Repository: CRAN
Date/Publication: 2010-02-04 08:46:28

More information about MAc at CRAN
Path: /cran/new | permanent link

Wed, 03 Feb 2010

New package sphet with initial version 0.1-22
Package: sphet
Version: 0.1-22
Date: 2009-12-17
Title: Spatial Models with heteroskedastic innovations
Author: Gianfranco Piras
Maintainer: Gianfranco Piras
Depends: R (>= 2.10.1), nlme, spdep, Matrix
Description: GM estimation and Spatial HAC
License: GPL-2
LazyLoad: yes
LazyData: yes
Repository: CRAN
Repository/R-Forge/Project: sphet
Repository/R-Forge/Revision: 8
Date/Publication: 2010-02-03 15:43:33
Packaged: 2010-01-24 23:25:36 UTC; rforge

More information about sphet at CRAN
Path: /cran/new | permanent link

New package GWRM with initial version 1.1
Package: GWRM
Version: 1.1
Date: 2009-12-01
Title: GWRM
Author: A.J. Saez-Castillo , J. Rodriguez-Avi , A. Conde-Sanchez , M.J. Olmo-Jimenez , A.M. Martinez-Rodriguez
Maintainer: A.J. Saez-Castillo
Description: GWRM is a package for fitting Generalized Waring Regression Models. It includes the dataset and the example of Rodriguez-Avi, J; Conde-Sanchez, A; Saez-Castillo, A.J., Olmo-Jimenez, M. J. and Martinez Rodriguez, A. M.(2009). A generalized Waring regression model for count data. Computational Statistics and Data Analysis, 53, pp. 3717-3725.
Depends: R (>= 2.6.0)
License: GPL (>= 2)
Packaged: 2010-01-27 07:15:32 UTC; UJA
Repository: CRAN
Date/Publication: 2010-02-03 15:43:09

More information about GWRM at CRAN
Path: /cran/new | permanent link

New package codep with initial version 0.1-6
Package: codep
Type: Package
Title: Multiscale Codependence Analysis
Version: 0.1-6
Date: 2010-03-2
Author: Guillaume Guenard, with contributions from Bertrand Pages
Maintainer: Guillaume Guenard
Description: Computation of Multiscale Codependence Analysis and Moran's eigenvector maps (mem), as an additional feature.
Depends: R (>= 2.0.0), stats
Suggests: vegan
License: GPL-2
LazyLoad: yes
Revision: 001
URL: http://www.r-project.org
Packaged: 2010-02-03 08:37:38 UTC; hornik
Repository: CRAN
Date/Publication: 2010-02-03 10:13:18

More information about codep at CRAN
Path: /cran/new | permanent link

Tue, 02 Feb 2010

New package RProtoBuf with initial version 0.1-0
Package: RProtoBuf
Version: 0.1-0
Date: $Date: 2010-02-01 20:54:42 +0100 (Mon, 01 Feb 2010) $
Author: Romain Francois and Dirk Eddelbuettel
Maintainer: Romain Francois
Title: R Interface to the Protocol Buffers API
Description: Protocol Buffers are a way of encoding structured data in an efficient yet extensible format. Google uses Protocol Buffers for almost all of its internal RPC protocols and file formats.
Depends: R (>= 2.10.0), Rcpp (>= 0.7.2), methods
Suggests: RUnit
SystemRequirements: Protocol Buffer compiler (to create C++ header and source files from .proto descriptions) and library (version 2.2.0 or later)
License: GPL-2
URL: http://r-forge.r-project.org/projects/rprotobuf/, http://code.google.com/p/protobuf/
MinimumLibProtoVersion: 2002000
BugReports: http://r-forge.r-project.org/tracker/index.php?group_id=576&atid=2338
OS_type: unix
Packaged: 2010-02-01 20:16:24 UTC; romain
Repository: CRAN
Date/Publication: 2010-02-02 10:08:32

More information about RProtoBuf at CRAN
Path: /cran/new | permanent link

New package JJcorr with initial version 0.01
Package: JJcorr
Type: Package
Title: Calculates polychorical correlations for several copula families.
Version: 0.01
Date: 2009-11-08
Author: Jeroen Ooms and Joakim Ekstrom
Maintainer: Jeroen Ooms
Description: Calculates polychorical correlations for several copula families.
License: GPL
LazyLoad: yes
Depends: fCopulae, mvtnorm
Packaged: 2010-02-01 21:24:14 UTC; jeroenooms
Repository: CRAN
Date/Publication: 2010-02-02 10:08:23

More information about JJcorr at CRAN
Path: /cran/new | permanent link

New package MADAM with initial version 1.0
Package: MADAM
Type: Package
Title: This package provides some basic methods for meta-analysis
Version: 1.0
Date: 2009-10-14
Author: Karl Kugler
Maintainer: Karl Kugler
Description: In this package we provide some basic utilities for performing meta-analysis. We included methods for dealing with missing values, or measurements with a variance of zero. For developing or testing meta-analysis methods a mock up data model is integrated. Additionally did we implement a method for performing significance based methods proposed by Fisher and Rhodes. For visualizing the results three methods were added.
License: LGPL
LazyLoad: yes
Depends: R (>= 2.9), Biobase (>= 2.4), snow, qvalue, RankProd
Imports: RColorBrewer, GeneMeta, gplots, genefilter, impute
Suggests: Rmpi
Packaged: 2010-02-02 09:03:36 UTC; kuglerka
Repository: CRAN
Date/Publication: 2010-02-02 10:08:24

More information about MADAM at CRAN
Path: /cran/new | permanent link

Mon, 01 Feb 2010

New package symmoments with initial version 1.0
Package: symmoments
Title: Symbolic Central Moments of the Multivariate Normal Distribution
Version: 1.0
Date: 2010-01-31
Author: Kem Phillips
Depends: mvtnorm
Maintainer: Kem Phillips
Description: Symbolic central moments of the multivariate normal distribution. Computes a standard representation, LateX code, and values at specified covariance matrices.
License: GPL-2
Packaged: 2010-02-01 22:57:18 UTC; zeileis
Repository: CRAN
Date/Publication: 2010-02-02 00:20:59

More information about symmoments at CRAN
Path: /cran/new | permanent link

New package RH2 with initial version 0.1-0
Package: RH2
Version: 0.1-0
Date: 2010-02-01
Title: H2 Database
Author: G. Grothendieck. Author of H2 is Thomas Mueller.
Maintainer: G. Grothendieck
Description: DBI interface to H2 database. H2 version 1.2.128 is included.
Depends: methods, RJDBC
SystemRequirements: java runtime
License: Mozilla Public License
URL: http://www.h2database.com
Packaged: 2010-01-31 21:52:50 UTC; Louis
Repository: CRAN
Date/Publication: 2010-02-01 19:26:37

More information about RH2 at CRAN
Path: /cran/new | permanent link

New package GGally with initial version 0.1
Package: GGally
Type: Package
Title: Extension to ggplot2.
Version: 0.1
Date: 2010-1-20
Author: Barret Schloerke , Di Cook , Heike Hofmann , and Hadley Wickham
Maintainer: Barret Schloerke
Description: Package contains templates for different plots to be combined into a plot matrix.
Depends: ggplot2
License: GPL (>= 2.0)
LazyLoad: yes
Collate: 'find-combo.r' 'gg-plots.r' 'ggpairs.r'
Packaged: 2010-01-31 18:02:03 UTC; barret
Repository: CRAN
Date/Publication: 2010-02-01 19:26:35

More information about GGally at CRAN
Path: /cran/new | permanent link

Fri, 29 Jan 2010

New package phyclust with initial version 0.1-1
Package: phyclust
Version: 0.1-1
Date: 2010-01-28
Title: Phylogenetic Clustering
Author: Wei-Chen Chen, Karin S. Dorman, Ranjan Maitra
Maintainer: Wei-Chen Chen
Depends: R (>= 2.6.0), ape
LazyLoad: no
LazyData: yes
Description: Model Based Phylogenetic Clustering
License: GPL (>= 2)
URL: http://thirteen-01.stat.iastate.edu/snoweye/phyclust/
Packaged: Thu Jan 28 18:45:25 2010; snoweye
Repository: CRAN
Date/Publication: 2010-01-29 07:53:08

More information about phyclust at CRAN
Path: /cran/new | permanent link

New package fftw with initial version 1.0-1
Package: fftw
Version: 1.0-1
Title: Fast FFT and DCT based on FFTW
Description: Provides a simple and efficient wrapper around the fastest Fourier transform in the west (FFTW) library.
Author: Sebastian Krey Uwe Ligges Olaf Mersmann
Maintainer: Olaf Mersmann
Depends: R (>= 2.10.0)
SystemRequirements: fftw3 (>= 3.1.2)
License: GPL-2
Date:
Packaged: 2010-01-28 17:39:38 UTC; olafm
Repository: CRAN
Date/Publication: 2010-01-29 07:52:53

More information about fftw at CRAN
Path: /cran/new | permanent link

Thu, 28 Jan 2010

New package fisheyeR with initial version 0.9
Package: fisheyeR
Type: Package
Title: Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
Version: 0.9
Date: 2009-12-29
Author: Eduardo San Miguel Martin
Maintainer: Eduardo San Miguel Martin
Description: fisheyeR provides tools for creating Interactive Data Visualizations by implementing ideas from Furnas, Munzner, Costa and Venturini.
License: GPL-2
LazyLoad: yes
Depends: tkrplot, methods
Repository: CRAN
Repository/R-Forge/Project: fisheyer
Repository/R-Forge/Revision: 10
Date/Publication: 2010-01-28 07:49:41
Packaged: 2010-01-24 22:33:04 UTC; rforge

More information about fisheyeR at CRAN
Path: /cran/new | permanent link

Wed, 27 Jan 2010

New package trio with initial version 1.0.2
Package: trio
Type: Package
Title: Processing and Simulating Genotype Data for Trio Logic Regression
Version: 1.0.2
Date: 2010-02-26
Author: Qing Li, Holger Schwender
Maintainer: Qing Li
Depends: survival, haplo.stats
Description: Set up matched case-pseudo controls genotypes data for trios in order to run trio logic regreesion, to impute missing genotypes in trios, or to simulate case-parent trios with disease risk dependent on SNP-SNP interaction. This package furthermore contains functions for computing the values of pairwise LD measures and for identifying LD blocks.
License: LGPL-2
Packaged: 2010-01-26 23:26:57 UTC; hschwend
Repository: CRAN
Date/Publication: 2010-01-27 16:30:45

More information about trio at CRAN
Path: /cran/new | permanent link

New package exactci with initial version 1.0-0
Package: exactci
Type: Package
Title: Exact P-values and Matching Confidence Intervals for simple Discrete Parametric Cases
Version: 1.0-0
Date: 2010-01-04
Author: M.P. Fay
Maintainer: M.P. Fay
Depends: stats
Description: Calculates exact tests and confidence intervals for one and two-sample binomial and Poisson cases.
License: GPL-2
LazyLoad: yes
Packaged: 2010-01-26 20:38:31 UTC; faym
Repository: CRAN
Date/Publication: 2010-01-27 10:51:25

More information about exactci at CRAN
Path: /cran/new | permanent link

Tue, 26 Jan 2010

New package rEMM with initial version 0.1-2
Package: rEMM
Version: 0.1-2
Date: 2010-01-25
Title: Extensible Markov Model (EMM) for Data Stream Clustering in R
Author: Michael Hahsler and Margaret H. Dunham
Maintainer: Michael Hahsler
Description: The Extensible Markov Model (EMM) adds a temporal component to data stream clustering by superimposing a dynamically adapting Markov Chain. This package implements EMM on top of threshold NN, a simple clustering algorithm for data streams.
Classification/ACM: G.4, H.2.8, I.5.1
URL: http://R-Forge.R-project.org/projects/remm/
Depends: R (>= 2.7.0), methods, stats, graph, proxy, cluster, MASS, clusterGeneration
Imports: stats
Suggests: Rgraphviz, RBGL
License: GPL-2
Packaged: 2010-01-25 16:56:08 UTC; hahsler
Repository: CRAN
Date/Publication: 2010-01-26 08:45:25

More information about rEMM at CRAN
Path: /cran/new | permanent link

New package lmPerm with initial version 1.0-0
Package: lmPerm
Version: 1.0-0
Date: 2010/1/13
Title: Permutation tests for linear models
Author: Bob Wheeler
Maintainer: Bob Wheeler
Description: Linear model functions using permutation tests.
License: GPL (>= 2)
URL: http://www.bobwheeler.com/stat
Packaged: 2010-01-25 17:22:31 UTC; Bob Wheeler
Repository: CRAN
Date/Publication: 2010-01-26 08:26:43

More information about lmPerm at CRAN
Path: /cran/new | permanent link

New package Unicode with initial version 0.1-1
Package: Unicode
Version: 0.1-1
Date: 2010-01-26
Title: Unicode data and utilities
Author: Kurt Hornik
Maintainer: Kurt Hornik
Description: Data from Unicode 5.2.0 and related utilities
Depends: R (>= 2.10.0)
Encoding: UTF-8
License: GPL-2
Packaged: 2010-01-26 10:37:12 UTC; hornik
Repository: CRAN
Date/Publication: 2010-01-26 10:45:49

More information about Unicode at CRAN
Path: /cran/new | permanent link

Sat, 23 Jan 2010

New package recommenderlab with initial version 0.1-0
Package: recommenderlab
Version: 0.1-0
Date: 2009-09-11
Title: Lab for Testing and Developing Recommender Algorithms for Binary Data
Author: Michael Hahsler
Maintainer: Michael Hahsler
Description: Provides a research infrastructure to test and develop recommender algorithms. Currently the focus is on recommender systems for binary data.
Classification/ACM: G.4, H.2.8
Depends: R (>= 2.8.0), methods, Matrix, registry, arules (>= 1.0-1), cluster, proxy
Imports: Matrix, arules
Suggests: ROCR
URL: http://R-Forge.R-project.org/projects/recommenderlab/
License: GPL-2
Copyright: All code is joint Copyright (C) Southern Methodist University and Michael Hahsler
Packaged: 2010-01-22 19:55:42 UTC; hahsler
Repository: CRAN
Date/Publication: 2010-01-23 10:54:46

More information about recommenderlab at CRAN
Path: /cran/new | permanent link

New package ROracleUI with initial version 1.0-0
Package: ROracleUI
Version: 1.0-0
Date: 2010-01-23
Title: Convenient Tools for Working with Oracle Databases
Author: Arni Magnusson
Maintainer: Arni Magnusson
Depends: R (>= 2.10.0), DBI, ROracle
SystemRequirements: Oracle client
OS_type: unix
Description: Easy-to-use functions to explore Oracle databases and import data into R. User interface for the ROracle package.
License: GPL (>= 2)
Packaged: 2010-01-23 01:08:17 UTC; arnima
Repository: CRAN
Date/Publication: 2010-01-23 11:05:45

More information about ROracleUI at CRAN
Path: /cran/new | permanent link

Fri, 22 Jan 2010

New package edtdbg with initial version 1.0.0
Package: edtdbg
Version: 1.0.0
Author: Norm Matloff
Maintainer: Norm Matloff
Depends: R (>= 2.10.0)
Date: 1/19/2010
Title: Integrating R's debug() with Your Text Editor
Description: Integrates R's debugging facilities with your text editor, featuring code tracking, variable display, quick breakpoint setting, and easy toggling of function debug status.
LazyLoad: no
License: GPL (>= 2)
Repository: CRAN
Packaged: 2010-01-21 17:20:43 UTC; matloff
Date/Publication: 2010-01-22 07:47:49

More information about edtdbg at CRAN
Path: /cran/new | permanent link

New package SQN with initial version 1.0
Package: SQN
Type: Package
Title: subset quantile normalization
Version: 1.0
Date: 2009-06-11
Author: Zhijin(Jean) Wu
Maintainer: Zhijin(Jean) Wu
Depends: R (>= 2.6.0), mclust(>= 3.2), nor1mix(>= 1.0-7)
Description: normalizes based a subset of negative control probes
License: LGPL (>= 2.0)
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: sqn
Repository/R-Forge/Revision: 2
Date/Publication: 2010-01-22 07:47:36
Packaged: 2009-12-11 21:13:03 UTC; rforge

More information about SQN at CRAN
Path: /cran/new | permanent link

Thu, 21 Jan 2010

New package unmarked with initial version 0.8-1
Package: unmarked
Version: 0.8-1
Date: 2009-12-23
Type: Package
Title: Models for Data from Unmarked Animals
Author: Ian Fiske, Richard Chandler
Maintainer: Ian Fiske
Depends: R (>= 2.9.0), methods, reshape, lattice
Imports: graphics, stats, utils
Description: Unmarked estimates wildlife parameters for many popular sampling methods including occurrence, point count, and distance data using hierarchical models.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Collate: 'classes.R' 'unmarkedEstimate.R' 'mapInfo.R' 'unmarkedFrame.R' 'unmarkedFit.R' 'utils.R' 'colext.R' 'distsamp.R' 'multinomPois.R' 'occu.R' 'occuRN.R' 'pcount.R' 'unmarkedFitList.R' 'unmarkedLinComb.R'
URL: http://r-forge.r-project.org/projects/unmarked/
Repository: CRAN
Repository/R-Forge/Project: unmarked
Repository/R-Forge/Revision: 547
Date/Publication: 2010-01-21 16:28:37
Packaged: 2010-01-20 21:28:51 UTC; rforge

More information about unmarked at CRAN
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New package mspath with initial version 0.9-6
Package: mspath
Title: Multi-state Path-Dependent Models in Discrete Time
Version: 0.9-6
Date: 2010-01-20
Author: Ross Boylan and Peter Bacchetti , building on the work of Christopher H. Jackson . Thorsten Ottosen for the ptr_container library. Gennadiy Rozental for the Boost Test Library. And the authors of other Boost libraries used by the previous two.
Description: Functions for fitting path-dependent (non-Markov) multi-state models to categorical processes observed at arbitrary times, optionally with misclassified responses, and covariates on transition or misclassification rates. Uses discrete-time approximation. Based on the Jackson's msm package v 0.3.1, with an interface as compatible as possible.
Maintainer: Ross Boylan
Depends: methods, stats
Suggests: Rmpi
SystemRequirements: Boost C++ libraries (1.31 or greater)
License: file LICENSE
Collate: allGenerics.R checkPoint.R mspathCoefficients.R mspathCalculator.R mspathDistributedCalculator.R mspath.R readingError.R runTime.R subset.R trial.R utils.R zzz.R
Packaged: Wed Jan 20 16:44:50 2010; ross
Repository: CRAN
Date/Publication: 2010-01-21 07:13:45

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Wed, 20 Jan 2010

New package umlr with initial version 0.1.1
Package: umlr
Title: Statistical Software Development with UML and R
Depends: oosp (>= 0.2.0)
Version: 0.1.1
Date: 2010-01-20
Author: CHARLOTTE MAIA
Maintainer: Charlotte Maia
Description: Very early and very rough (hence very limited) prototype for developing statistical software with UML and R, with an emphasis on using (both Latex-friendly and GUI-based) UML class diagrams for object oriented design and visualisation.
License: GPL (>= 2)
Packaged: 2010-01-20 08:49:16 UTC; maia
Repository: CRAN
Date/Publication: 2010-01-20 13:11:18

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Tue, 19 Jan 2010

New package extracat with initial version 1.0-0
Package: extracat
Type: Package
Title: Graphic Extensions for Categorical Data
Version: 1.0-0
Date: 2010-01-18
Author: Alexander Pilhoefer
Maintainer: Alexander Pilhoefer
Description: graphic extensions for categorical data
Depends: R (>= 2.9.2), reshape, grid, iplots, MASS
Suggests: iWidgets, JGR
LazyLoad: yes
LazyData: yes
License: GPL (>= 2)
Packaged: 2010-01-19 16:40:36 UTC; Aggilex
Repository: CRAN
Date/Publication: 2010-01-19 18:14:11

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New package SLC with initial version 0.1
Package: SLC
Version: 0.1
Date: 2009-12-16
Title: Slope and level change
Author: Antonio Solanas, Rumen Manolov, and Patrick Onghena
Maintainer: Rumen Manolov
Depends: R (>= 2.6.2)
Description: Estimates the slope and level change present in data after removing phase A trend. Represents graphically the original and the detrended data.
License: GPL (>= 2)
Packaged: 2010-01-19 09:21:08 UTC; dleivaur
Repository: CRAN
Date/Publication: 2010-01-19 10:18:39

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New package RcmdrPlugin.SLC with initial version 0.1
Package: RcmdrPlugin.SLC
Type: Package
Title: SLC Rcmdr Plug-in
Version: 0.1
Date: 2010-14-01
Author: Antonio Solanas , Rumen Manolov .
Maintainer: Rumen Manolov
Depends: Rcmdr (>= 1.3), tcltk, SLC
Description: This package provides a GUI for the SLC package, it is written as an Rcmdr plug-in.
License: GPL (>= 2)
Packaged: 2010-01-19 09:22:34 UTC; dleivaur
Repository: CRAN
Date/Publication: 2010-01-19 10:18:37

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New package FunctSNP with initial version 1.0-1
Package: FunctSNP
Type: Package
Title: FunctSNP - SNP annotation data methods and species specific database builder
Version: 1.0-1
Date: 2009-09-10
Author: S. J. Goodswen with contributions from N. S. Watson-Haigh, H. N. Kadarmideen and C. Gondro
Maintainer: S. J. Goodswen
Description: This package provides functions to query species specific annotation databases. The main use of the package is to associate SNPs to functional information. Functions are also provided to download or build local databases from public repositories.
License: GPL-3
Depends: R (>= 2.9.0), DBI, RSQLite, utils
LazyLoad: yes
Packaged: 2010-01-19 06:11:43 UTC; goo17a
Repository: CRAN
Date/Publication: 2010-01-19 08:00:14

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Mon, 18 Jan 2010

New package RPPanalyzer with initial version 1.0
Package: RPPanalyzer
Type: Package
Title: Reads, annotates, and normalizes reverse phase protein array data
Version: 1.0
Date: 2009-11-11
Author: Heiko Mannsperger with contributions of Stephan Gade
Maintainer: Heiko Mannsperger
Depends: R (>= 2.8.1), limma, gam, Hmisc, gplots, quantreg, stats4, Biobase (>= 1.14.1)
Description: Reads in sampledescription and slidedescription files and annotates the expression values taken from gpr files. After Normalization data can be presented in boxplots, heatmaps or dotplots.
License: LGPL
LazyLoad: yes
Packaged: 2010-01-18 14:51:07 UTC; gade
Repository: CRAN
Date/Publication: 2010-01-18 16:01:27

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New package halp with initial version 0.1.1
Package: halp
Type: Package
Title: halp
Version: 0.1.1
Date: 2010-01-18
Author: Daniel Haase
Maintainer: Daniel Haase
Description: Show certain type of comments from function bodies as "live-help"
License: GPL (>= 2)
Packaged: 2010-01-18 10:42:33 UTC; haase
Repository: CRAN
Date/Publication: 2010-01-18 13:22:02

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New package asd with initial version 1.0
Package: asd
Type: Package
Title: Simulations for adaptive seamless designs
Version: 1.0
Date: 2009-12-04
Author: Nick parsons
Maintainer: Nick Parsons
Depends: mvtnorm
Description: Package runs simulations for adaptive seamless designs using early outcomes for treatment selection.
License: GPL-2
LazyLoad: yes
Packaged: 2010-01-13 09:49:02 UTC; Nick
Repository: CRAN
Date/Publication: 2010-01-18 10:45:40

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New package SpatialEpi with initial version 0.1
Package: SpatialEpi
Type: Package
Title: Performs various spatial epidemiological analyses
Version: 0.1
Date: 2010-01-17
Depends: MASS, sp, maps, maptools, shapefiles
Author: Albert Y. Kim
Maintainer: Albert Y. Kim
Description: Cluster Detection, Disease Mapping
License: GPL-2
LazyLoad: yes
Packaged: 2010-01-18 01:47:30 UTC; rudeboybert
Repository: CRAN
Date/Publication: 2010-01-18 07:56:38

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Sun, 17 Jan 2010

New package paleoMAS with initial version 1.1
Package: paleoMAS
Type: Package
Title: Paleoecological Analysis
Version: 1.1
Date: 2010-01-16
Author: Alexander Correa-Metrio, Dunia Urrego, Kenneth Cabrera, Mark Bush
Maintainer: Alexander Correa-Metrio
Depends: MASS, vegan, lattice
Description: basic statistical operations for paleoecology
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-01-16 21:16:11 UTC; acorrea
Repository: CRAN
Date/Publication: 2010-01-17 10:52:48

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New package epinet with initial version 0.0-7
Package: epinet
Version: 0.0-7
Date: 2010-01-15
Title: A collection of epidemic/network-related tools
Author: Chris Groendyke , David Welch , David R. Hunter ,
Maintainer: Chris Groendyke
Depends:
Suggests: network
Description: A collection of epidemic/network-related tools. Simulates transmission of diseases through contact networks. Performs Bayesian inference on network and epidemic parameters, given epidemic data.
License: GPL-2
Packaged: 2010-01-16 01:49:40 UTC; ChrisG
Repository: CRAN
Date/Publication: 2010-01-17 10:52:44

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Fri, 15 Jan 2010

New package traitr with initial version 0.1
Package: traitr
Type: Package
Title: An interface for creating GUIs modeled in part after traits UI module for python.
Version: 0.1
Author: John Verzani
Maintainer: John Verzani
Description: An inteface for creating GUIs modeled in part after the traits UI module for pytoh. The basic design takes advantage of model-view-controller design pattern. The overall interface makes basic dialogs quite easy to produce.
Depends: digest, proto, gWidgets, gWidgetsRGtk2
License: GPL (>= 2)
LazyLoad: FALSE
Collate: 'helpers.R' 'base.R' 'model.R' 'view.R' 'controller.R' 'container.R' 'editor.R' 'itemgroup.R' 'dialog.R' 'items.R' 'traitR-package.R'
Packaged: 2010-01-15 03:25:05 UTC; verzani
Repository: CRAN
Date/Publication: 2010-01-15 08:50:03

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New package logging with initial version 0.1-8996
Package: logging
Version: 0.1-8996
Date: 2010-01-14
Title: a tentative logging package
Author: Mario Frasca
Maintainer: Mario Frasca
Description: a logging package emulating the python logging package.
License: GPL (>= 2)
Depends: R (>= 2.9.2)
Packaged: 2010-01-15 09:08:28 UTC; mario
Repository: CRAN
Date/Publication: 2010-01-15 09:17:34

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Thu, 14 Jan 2010

New package itertools with initial version 0.1-1
Package: itertools
Type: Package
Title: Iterator Tools
Version: 0.1-1
Author: Steve Weston, Hadley Wickham
Maintainer: Steve Weston
Description: Various tools for creating iterators, many patterned after functions in the Python itertools module, and others patterned after functions in the 'snow' package.
Depends: R (>= 2.5.0), iterators(>= 1.0.0)
Suggests: foreach
Enhances: foreach, iterators
License: GPL-2
Repository: CRAN
Repository/R-Forge/Project: itertools
Repository/R-Forge/Revision: 38
Date/Publication: 2010-01-14 15:37:23
Packaged: 2010-01-13 21:12:15 UTC; rforge

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New package mvabund with initial version 0.1-6
Package: mvabund
Title: statistical methods for analysing multivariate abundance data
Version: 0.1-6
Date: 13-01-2010
Author: Ulrike Naumann, Yi Wang and David Warton
Maintainer: Yi Wang
Description: A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See mvabund-package.Rd for details of overall package organization. The package is implemented with the Gnu Scientific Library (http://www.gnu.org/software/gsl/) v1.13 and Rcpp (http://dirk.eddelbuettel.com/code/rcpp.html) v0.6.6 C++ classes.
Depends: R (>= 2.9.0), methods
SystemRequirements: None
License: LGPL (>= 2.1)
Packaged: 2010-01-14 00:11:36 UTC; z3069443
Repository: CRAN
Date/Publication: 2010-01-14 12:00:32

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Mon, 11 Jan 2010

New package scrapeR with initial version 0.1
Package: scrapeR
Type: Package
Title: Functions for Scraping Data from HTML and XML Documents
Version: 0.1
Date: 2009-10-12
Author: Ryan M. Acton
Maintainer: Ryan M. Acton
Depends: XML,RCurl
Description: Functions for Scraping Data from Web-Based Documents
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-01-11 07:10:53 UTC; ryan
Repository: CRAN
Date/Publication: 2010-01-11 07:42:50

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New package GAMens with initial version 1.0
Package: GAMens
Title: Applies GAMbag, GAMrsm and GAMens ensemble classifiers for binary classification
Version: 1.0
Author: Koen W. De Bock, Kristof Coussement and Dirk Van den Poel
Maintainer: Koen W. De Bock
Depends: R (>= 2.4.0), splines, akima, gam
Description: This package implements the GAMbag, GAMrsm and GAMens ensemble classifiers for binary classification (De Bock et al., 2010). The ensembles implement Bagging (Breiman, 1996), the Random Subspace Method (Ho, 1998), or both, and use Hastie and Tibshirani's (1990) generalized additive models (GAMs) as base classifiers. Once an ensemble classifier has been trained, it can be used for predictions on new data. A function for cross validation is also included.
License: GPL (>= 2)
Packaged: Mon Jan 11 11:20:11 2010; kwdebock
Repository: CRAN
Date/Publication: 2010-01-11 11:11:08

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Sun, 10 Jan 2010

New package samplesize with initial version 0.1-5
Package: samplesize
Type: Package
Title: a collection of sample size functions
Version: 0.1-5
Date: 2010-01-09
Author: Ralph Scherer>
Maintainer: Ralph Scherer
Description: Computes sample size for Student's t-test with equal and nonequal variances and Wilcoxon-Mann-Whitney test with and without ties
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-01-09 20:59:18 UTC; ralph
Repository: CRAN
Date/Publication: 2010-01-10 08:04:43

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New package HMM with initial version 1.0
Package: HMM
Type: Package
Version: 1.0
Title: HMM - Hidden Markov Models
Date: 2010-01-10
Maintainer: Lin Himmelmann
Author: Scientific Software Development - Dr. Lin Himmelmann, www.linhi.com
Depends: R (>= 2.0.0)
Description: Easy to use library to setup, apply and make inference with discrete time and discrete space Hidden Markov Models
License: GPL (>= 2)
Packaged: 2010-01-09 19:56:19 UTC; x
Repository: CRAN
Date/Publication: 2010-01-10 08:04:29

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Fri, 08 Jan 2010

New package optpart with initial version 2.0-1
Package: optpart
Version: 2.0-1
Date: 2010-01-04
Title: Optimal partitioning of similarity relations
Author: David W. Roberts
Maintainer: David W. Roberts
Depends: cluster, labdsv, MASS, plotrix
Description: The package contains a set of algorithms for creating partitions and coverings of objects largely based on operations on similarity relations (or matrices). There are several iterative re-assigmnent algorithms optimizing different goodness-of-clustering criteria. In addition, there are covering algorithms "clique" which derives maximal cliques, and "maxpact" which creates a covering of maximally compact sets. Graphical analyses and conversion routines are also included.
License: GPL (>= 2)
URL: http://ecology.msu.montana.edu/labdsv/R
Packaged: 2010-01-08 12:28:36 UTC; root
Repository: CRAN
Date/Publication: 2010-01-08 17:04:20

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New package coenoflex with initial version 1.0-1
Package: coenoflex
Version: 1.0-1
Date: 2010-01-08
Title: Gradient-Based Coenospace Vegetation Simulator
Author: David W. Roberts
Maintainer: David W. Roberts
Depends: mgcv
Description: Simulates the composition of samples of vegetation according to gradient-based vegetation theory. Features a flexible algorithm incorporating competition and complex multi-gradient interaction.
License: GPL (>= 2)
URL: http://ecology.msu.montana.edu/labdsv/R/coenoflex
Packaged: 2010-01-08 15:32:07 UTC; root
Repository: CRAN
Date/Publication: 2010-01-08 17:04:17

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New package MImix with initial version 1.0
Package: MImix
Title: Mixture summary method for multiple imputation
Version: 1.0
Author: Russell Steele, Naisyin Wang, and Adrian Raftery
Description: Tools to combine results for multiply-imputed data using mixture approximations
Maintainer: Russell Steele
Requires: mitools
License: GPL-2
Packaged: 2010-01-07 23:46:05 UTC; steele
Repository: CRAN
Date/Publication: 2010-01-08 08:08:03

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Thu, 07 Jan 2010

New package CorrBin with initial version 1.02
Package: CorrBin
Title: Nonparametrics with clustered binary data
Version: 1.02
Date: 2010-01-06
Author: Aniko Szabo
Maintainer: Aniko Szabo
Depends: R(>= 2.6.0), boot
Suggests: geepack, lattice
Description: This package implements non-parametric analyses for clustered binary data. The elements of the cluster are assumed exchangeable, and identical joint distribution (also known as marginal compatibility, or reproducibility) is assumed for clusters of different sizes. A trend test based on stochastic ordering is implemented.
License: GPL (>= 2)
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: corrbin
Repository/R-Forge/Revision: 44
Date/Publication: 2010-01-07 15:58:56
Packaged: 2010-01-06 21:05:05 UTC; rforge

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Wed, 06 Jan 2010

New package R2Cuba with initial version 1.0-0
Package: R2Cuba
Title: Multidimensional Numerical Integration
Version: 1.0-0
Date: 2010-01-01
Author: The Cuba library has been written by Thomas Hahn
(http: //wwwth.mppmu.mpg.de/members/hahn); Interface to R was written by Annie Bouvier and Kiên Kiêu
Maintainer: Annie Bouvier
Depends: methods
Description: R2Cuba implements four general-purpose multidimensional integration algorithms: Vegas, Suave, Divonne and Cuhre
License: GPL (>= 3)
Encoding: latin1
Packaged: Tue Jan 5 15:11:01 2010; abouvier
Repository: CRAN
Date/Publication: 2010-01-06 15:31:51

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New package pyramid with initial version 1.1
Package: pyramid
Version: 1.1
Date: 2010/1/6
Title: Functions to draw population pyramid
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
Depends: R (>= 2.2.0)
Description: Drawing population pyramid using (1) data.frame or (2) vectors. The former is named as pyramid() and the latter pyramids(), as lapper function of pyramid().
License: GPL (>= 2)
URL: http://phi.med.gunma-u.ac.jp/swtips/R.html#PYRAMID
Packaged: 2010-01-06 04:14:16 UTC; nminato
Repository: CRAN
Date/Publication: 2010-01-06 12:11:59

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New package rworldmap with initial version 0.106
Package: rworldmap
Type: Package
Title: For mapping global data : rworldmap
Version: 0.106
Date: 2010-01-04
Author: Andy South, with contributions from Barry Rowlingson, Roger Bivand, Matthew Staines & Pru Foster
Maintainer: Andy South
Description: Enables mapping of country level and gridded user datasets.
License: GPL (>= 2)
Depends: R (>= 2.7.0), sp, maptools, foreign
Suggests: fields, spam, maps, RColorBrewer, classInt, cshapes
Packaged: 2010-01-05 12:40:57 UTC; ABS00
Repository: CRAN
Date/Publication: 2010-01-06 12:12:01

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New package genomatic with initial version 0.0-7
Package: genomatic
Type: Package
Title: Manages microsatellite projects. Creates 96-well maps, genotyping submission forms, rerun management, and import into statistical software.
Version: 0.0-7
Date: 2010-01-05
Author: Brian J. Knaus
Maintainer: Brian J. Knaus
Depends: R (>= 2.9.2), tcltk
Description: Manages DNA fragment analysis projects. Creates 96-well maps, genotyping submission forms, rerun management, and import to statistical software.
License: GPL-2
Packaged: 2010-01-06 04:21:09 UTC; knausb
Repository: CRAN
Date/Publication: 2010-01-06 12:11:47

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Tue, 05 Jan 2010

New package biglars with initial version 1.0
Package: biglars
Type: Package
Title: Scalable Least-Angle Regression and Lasso
Version: 1.0
Date: Mon Jan 04 14:00:00 PDT 2010
Author: Mark Seligman, Chris Fraley, Tim Hesterberg
Maintainer: Mark Seligman
Description: Least-angle regression, lasso and stepwise regression for numeric datasets in which the number of observations is greater than the number of predictors. The functions can be used with the ff library to accomodate datasets that are too large to be held in memory.
Depends: R (>= 2.10), ff
License: GPL (>= 2)
Packaged: 2010-01-05 09:52:40 UTC; hornik
Repository: CRAN
Date/Publication: 2010-01-05 10:05:48

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Mon, 04 Jan 2010

New package asbio with initial version 0.1
Package: asbio
Type: Package
Title: A collection of statistical tools for biologists
Version: 0.1
Depends: plotrix, vegan, MASS, lmomco, cluster, boot
Date: 2009-10-13
Author: Ken Aho
Maintainer: Ken Aho
Description: Contains functions from the book: "Applied Statistics for Biologists"
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2010-01-04 17:55:37 UTC; ken
Repository: CRAN
Date/Publication: 2010-01-04 20:32:09

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Sun, 03 Jan 2010

New package xlsxjars with initial version 0.1.0
Package: xlsxjars
Type: Package
Title: Package required jars for the xlsx package
Version: 0.1.0
Date: 2010-01-01
Depends: rJava
Imports: rJava
LazyLoad: yes
Author: Adrian A. Dragulescu
Maintainer: Adrian A. Dragulescu
Description: The xlsxjars package collects all the external jars required for the xlxs package. These external jars are quite large in size (15MB) and have a slow release cycle. By separating the Java and R development, the storage footprint on CRAN is reduced.
License: GPL-3
Repository: CRAN
Packaged: 2010-01-02 14:41:05 UTC; home
Date/Publication: 2010-01-03 11:43:10

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New package xlsx with initial version 0.1.1
Package: xlsx
Type: Package
Title: Read, write, format Excel 2007 (xlsx) files
Version: 0.1.1
Date: 2010-01-01
Depends: xlsxjars
Imports: xlsxjars
LazyLoad: yes
Author: Adrian A. Dragulescu
Maintainer: Adrian A. Dragulescu
Description: Provide R functions to read/write/format Excel 2007 (xlsx) file formats.
License: GPL-3
Packaged: 2010-01-02 15:20:52 UTC; home
Repository: CRAN
Date/Publication: 2010-01-03 11:43:07

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Fri, 01 Jan 2010

New package genefu with initial version 1.0.0
Package: genefu
Type: Package
Title: Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer.
Version: 1.0.0
Date: 2009
Description: R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.
Author: Benjamin Haibe-Kains, Gianluca Bontempi, Christos Sotiriou
Maintainer: Benjamin Haibe-Kains
Depends: survcomp, amap, mclust, gplots, R (>= 2.5.0)
Suggests: GeneMeta
License: GPL (>= 3)
URL: http://www.ulb.ac.be/di/mlg
LazyData: yes
Packaged: 2009-12-30 19:46:04 UTC; bhaibeka
Repository: CRAN
Date/Publication: 2010-01-01 17:51:20

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Tue, 29 Dec 2009

New package partitionMetric with initial version 1.0
Package: partitionMetric
Type: Package
Title: Compute a distance metric between two partitions of a set
Version: 1.0
Date: 2009-12-29
Author: David Weisman, Dan Simovici
Maintainer:
Depends: R (>= 2.10.1)
Description: partitionMetric computes a distance between two partitions of a set.
License: BSD
Copyright: Copyright (c) 2010, David Weisman and Dan Simovici, All rights reserved.
LazyLoad: yes
Packaged: 2009-12-29 15:56:41 UTC; mn1281
Repository: CRAN
Date/Publication: 2009-12-29 17:46:52

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Mon, 28 Dec 2009

New package micEconAids with initial version 0.6-0
Package: micEconAids
Version: 0.6-0
Date: 2009/12/25
Title: Demand Analysis with the Almost Ideal Demand System (AIDS)
Author: Arne Henningsen
Maintainer: Arne Henningsen
Depends: R (>= 2.4.0), systemfit (>= 1.0-0), miscTools (>= 0.6-0), lmtest, micEcon (>= 0.6-0)
Description: Demand analysis with the Almost Ideal Demand System (AIDS) suggested by Deaton and Muellbauer (1980)
License: GPL (>= 2)
URL: http://www.r-project.org, http://www.micEcon.org
Packaged: 2009-12-28 07:30:32 UTC; suapm095
Repository: CRAN
Date/Publication: 2009-12-28 11:33:56

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New package miscTools with initial version 0.6-0
Package: miscTools
Version: 0.6-0
Date: 2009/12/25
Title: Miscellanneous Tools and Utilities
Author: Arne Henningsen
Maintainer: Arne Henningsen
Suggests: Ecdat (>= 0.1-5)
Description: Miscellanneous small tools and utilities
License: GPL (>= 2)
URL: http://www.r-project.org, http://www.micEcon.org
Packaged: 2009-12-28 07:21:51 UTC; suapm095
Repository: CRAN
Date/Publication: 2009-12-28 11:34:06

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New package dcemriS4 with initial version 0.20.1
Package: dcemriS4
Version: 0.20.1
Date: 2009-12-22
Title: A Package for Medical Image Analysis (S4 implementation)
Author: Brandon Whitcher and Volker Schmid, with contributions from Andrew Thornton
Maintainer: Brandon Whitcher
Depends: R (>= 2.6.0), grDevices, graphics, methods, utils
Suggests: bitops, minpack.lm, multicore, splines, XML
Description: A collection of routines and documentation that allows one to perform a quantitative analysis of dynamic contrast-enhanced or diffusion-weighted MRI data. Medical imaging data should be organized using either the Analyze or NIfTI data formats.
License: BSD
URL: http://www.dcemri.org/, http://dcemri.sourceforge.net/
Packaged: 2009-12-26 19:54:11 UTC; bjw34032
Repository: CRAN
Date/Publication: 2009-12-28 11:33:47

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New package nytR with initial version 0.1
Package: nytR
Type: Package
Title: Provides access to the NY Times API.
Version: 0.1
Date: 2009-12-23
Author: Shane Conway
Maintainer: Shane Conway
Description: Provides access to various data sources (congressional vote data) through the NY Times API.
License: GPL-3
LazyLoad: no
Depends: XML, plyr
Collate: 'nyt.congress.R'
Packaged: 2009-12-27 17:07:37 UTC; sconway
Repository: CRAN
Date/Publication: 2009-12-28 10:53:08

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Sat, 26 Dec 2009

New package RcmdrPlugin.sos with initial version 0.1-0
Package: RcmdrPlugin.sos
Version: 0.1-0
Date: 2009-12-20
Title: Efficiently search R Help pages
Author: Liviu Andronic
Maintainer: Liviu Andronic
Depends: Rcmdr (>= 1.5-4), sos (>= 1.2-3), tcltk2
Description: Rcmdr interface to sos. The plug-in renders the sos searching functionality easily accessible via the Rcmdr menus. It also simplifies the task of performing multiple searches and subsequently obtaining the union or the intersection of the search results.
License: GPL (>= 2)
Repository: CRAN
Repository/R-Forge/Project: rsitesearch
Repository/R-Forge/Revision: 162
Date/Publication: 2009-12-26 14:50:38
Packaged: 2009-12-21 21:06:55 UTC; rforge

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Thu, 24 Dec 2009

New package r2dRue with initial version 1.0
Package: r2dRue
Type: Package
Title: 2dRue: 2d Rain Use Efficience model
Version: 1.0
Date: 2009-12-17
Author: Gabriel del Barrio, Juan Puigdefabregas, Maria E. Sanjuan, Marion Stellmes & Alberto Ruiz
Maintainer:
Description: 2dRUE is a methodology to make a diagnostic of land condition in a large territory during a given time period. Was developed under the DeSurvey IP.
License: GPL
LazyLoad: yes
Depends: rgdal,sp,matrixStats
Packaged: 2009-12-24 09:27:25 UTC; aruiz
Repository: CRAN
Date/Publication: 2009-12-24 10:42:16

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Wed, 23 Dec 2009

New package WMBrukerParser with initial version 1.1
Package: WMBrukerParser
Type: Package
Title: William and Mary Parser For Bruker-Ultraflex Mass Spec Data
Version: 1.1
Date: 2009-12-22
Author: William Cooke, Maureen Tracy and Dariya Malyarenko
Maintainer: William Cooke
Description: The package parses Bruker Ultraflex TOF mass spectrometry data and experimental parameter files into R structures for further signal processing and statistical analysis.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2009-12-23 01:32:25 UTC; Maureen Tracy
Repository: CRAN
Date/Publication: 2009-12-23 08:28:09

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Sun, 20 Dec 2009

New package cubature with initial version 1.0
Package: cubature
Type: Package
Title: Adaptive multivariate integration over hypercubes
Version: 1.0
Date: 2009-12-17
Author: C code by Steven G. Johnson, R by Balasubramanian Narasimhan
Maintainer: Balasubramanian Narasimhan
Description: Adaptive multivariate integration over hypercubes
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2009-12-18 23:17:03 UTC; naras
Repository: CRAN
Date/Publication: 2009-12-20 09:34:47

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Fri, 18 Dec 2009

New package Imap with initial version 1.0
Package: Imap
Type: Package
Title: Interactive Mapping
Version: 1.0
Date: 2009-10-28
Author: John R. Wallace
Maintainer: John R. Wallace
Depends: R (>= 2.10.0)
Description: Zoom in and out of maps or any supplied lines or points, with control for color, poly fill, and aspect.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2009-12-18 15:52:08 UTC; john wallace
Repository: CRAN
Date/Publication: 2009-12-18 16:36:34

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New package SampleSizeMeans with initial version 1.0
Package: SampleSizeMeans
Type: Package
Title: Sample size calculations for normal means
Version: 1.0
Date: 2009-12-16
Author: Lawrence Joseph and Patrick Belisle
Maintainer: Lawrence Joseph
Description: A set of R functions for calculating sample size requirements using three different Bayesian criteria in the context of designing an experiment to estimate a normal mean or the difference between two normal means. Functions for calculation of required sample sizes for the Average Length Criterion, the Average Coverage Criterion and the Worst Outcome Criterion in the context of normal means are provided. Functions for both the fully Bayesian and the mixed Bayesian/likelihood approaches are provided.
License: GPL (>= 2)
Packaged: Thu Dec 17 16:21:12 2009; Patrick
Repository: CRAN
Date/Publication: 2009-12-18 08:02:31

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Thu, 17 Dec 2009

New package batch with initial version 1.0-0
Package: batch
Version: 1.0-0
Date: 2009-11-26
Title: Batching Routines in Parallel and Passing Command-Line Arguments to R
Author: Thomas Hoffmann
Maintainer: Thomas Hoffmann
Description: Functions to allow you to easily pass command-line arguments into R (primary use is linux), and functions to aid in submitting your R code in parallel on a cluster and joining the results afterward (e.g. multiple parameter values for simulations running in parallel, splitting up a permutation test in parallel, etc.). See `parseCommandArgs(...)' for the main example of how to use this package.
Suggests: multicore
Imports: multicore
License: GPL
OS_type: unix
URL: http://sites.google.com/site/thomashoffmannproject/
LazyLoad: true
Packaged: 2009-12-16 18:20:03 UTC; merlin
Repository: CRAN
Date/Publication: 2009-12-17 17:17:16

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New package SampleSizeProportions with initial version 1.0
Package: SampleSizeProportions
Type: Package
Title: Calculating sample size requirements when estimating the difference between two binomial proportions
Version: 1.0
Date: 2009-12-16
Author: Lawrence Joseph , Roxane du Berger and Patrick Belisle
Maintainer: Lawrence Joseph
Description: A set of R functions for calculating sample size requirements using three different Bayesian criteria in the context of designing an experiment to estimate the difference between two binomial proportions. Functions for calculation of required sample sizes for the Average Length Criterion, the Average Coverage Criterion and the Worst Outcome Criterion in the context of binomial observations are provided. In all cases, estimation of the difference between two binomial proportions is considered. Functions for both the fully Bayesian and the mixed Bayesian/likelihood approaches are provided.
License: GPL (>= 2)
Packaged: Wed Dec 16 13:07:07 2009; Patrick
Repository: CRAN
Date/Publication: 2009-12-17 17:17:13

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New package CCP with initial version 0.1
Package: CCP
Type: Package
Title: Significance Tests for Canonical Correlation Analysis (CCA)
Version: 0.1
Date: 2009-12-14
Author: Uwe Menzel
Maintainer: Uwe Menzel to
Description: Significance tests for canonical correlation analysis, including asymptotic tests and a Monte Carlo method
License: GPL
LazyLoad: yes
Packaged: 2009-12-17 08:08:42 UTC; Uwe
Repository: CRAN
Date/Publication: 2009-12-17 17:17:09

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Wed, 16 Dec 2009

New package UScensus2000tract with initial version 0.02
Package: UScensus2000tract
Type: Package
Title: US Census 2000 Tract Level Shapefiles and Additional Demographic Data
Version: 0.02
Date: 2009-11-11
Author: Zack W. Almquist
Maintainer: Zack W. Almquist
Description: US 2000 Census Tract shapefiles and additional demographic data from the SF1 100 percent files. This data set contains polygon files in lat/lon coordinates and the corresponding demographic data for a number of different variables.
License: GPL (>= 2)
Depends: R (>= 2.10), maptools, sp, foreign, methods, grDevices, base, stats, utils
LazyLoad: yes
URL: http://disasternets.calit2.uci.edu/census2000/
Packaged: 2009-12-16 04:57:09 UTC; zack
Repository: CRAN
Date/Publication: 2009-12-16 11:02:35

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New package UScensus2000add with initial version 0.01
Package: UScensus2000add
Type: Package
Title: US Census 2000 Suite of R Packages: Demographic Add
Version: 0.01
Date: 2009-11-11
Author: Zack W. Almquist
Maintainer: Zack W. Almquist
Description: US 2000 Census shape files and additional demographic data from the SF1 100 percent files. This package contains a helper functions for the UScensus2000addblk, UScensus2000addblkgrp, UScensus2000addtract, UScensus2000add packages.
License: GPL (>= 2)
Depends: R (>= 2.10), maptools, sp, foreign, methods, grDevices, base, stats, utils, UScensus2000tract, UScensus2000cdp, gpclib, XML, UScensus2000
Suggests: UScensus2000blk, UScensus2000blkgrp
LazyLoad: yes
URL: http://disasternets.calit2.uci.edu/census2000/
Packaged: 2009-12-16 07:57:02 UTC; zack
Repository: CRAN
Date/Publication: 2009-12-16 11:01:58

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New package UScensus2000cdp with initial version 0.02
Package: UScensus2000cdp
Type: Package
Title: US Census 2000 Designated Places Shapefiles and Additional Demographic Data
Version: 0.02
Date: 2009-11-11
Author: Zack W. Almquist
Maintainer: Zack W. Almquist
Description: US Census 2000 Designated Places shapefiles and additional demographic data from the SF1 100 percent files. This data set contains polygon files in lat/lon coordinates and the corresponding demographic data for a number of different variables.
License: GPL (>= 2)
Depends: R (>= 2.10), maptools, sp, foreign, methods, grDevices, base, stats, utils
LazyLoad: yes
URL: http://disasternets.calit2.uci.edu/census2000/
Packaged: 2009-12-16 05:05:17 UTC; zack
Repository: CRAN
Date/Publication: 2009-12-16 11:02:03

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New package UScensus2000 with initial version 0.01
Package: UScensus2000
Type: Package
Title: US Census 2000 Suite of R Packages
Version: 0.01
Date: 2009-11-11
Author: Zack W. Almquist
Maintainer: Zack W. Almquist
Description: US 2000 Census shape files and additional demographic data from the SF1 100 percent files. This package contains a number of helper functions for the UScensus2000blk, UScensus2000blkgrp, UScensus2000tract, UScensus2000cdp packages.
License: GPL (>= 2)
Depends: R (>= 2.10), maptools, sp, foreign, methods, grDevices, base, stats, utils, UScensus2000tract, UScensus2000cdp, gpclib
LazyLoad: yes
URL: http://disasternets.calit2.uci.edu/census2000/
Packaged: 2009-12-16 05:41:17 UTC; zack
Repository: CRAN
Date/Publication: 2009-12-16 11:01:44

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Tue, 15 Dec 2009

New package heavy with initial version 0.1-1
Package: heavy
Title: Estimation in the linear mixed model using heavy-tailed distributions
Version: 0.1-1
Date: 2009-12-01
Author: Felipe Osorio
Maintainer: Felipe Osorio
Description: Estimation in linear mixed effects models using heavy-tailed distributions
URL: http://staff.deuv.cl/osorio/heavy
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2009-12-14 23:58:14 UTC; Administrador
Repository: CRAN
Date/Publication: 2009-12-15 12:33:08

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Mon, 14 Dec 2009

New package BioStatR with initial version 1.0.0
Package: BioStatR
Version: 1.0.0
Date: 2009-12-14
Depends: R (>= 2.4.0)
Imports:
Enhances:
Suggests:
Title: Exercices et problèmes de statistique avec le logiciel R
Author: Frederic Bertrand , Myriam Maumy-Bertrand .
Maintainer: Frederic Bertrand
Description: This packages provides datasets for the book "Exercices et problèmes de statistique avec le logiciel R".
License: GPL-2 | GPL-3
Encoding: latin1
URL: http://www-irma.u-strasbg.fr/~fbertran/
Classification/MSC:
Packaged: 2009-12-14 11:35:28 UTC; Bertrand
Repository: CRAN
Date/Publication: 2009-12-14 19:58:34

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New package bfast with initial version 1.1
Package: bfast
Version: 1.1
Date: 2009-12-11
Title: BFAST: Breaks For Additive Seasonal and Trend
Author: Jan Verbesselt, with contributions from Rob Hyndman
Maintainer: Jan Verbesselt
Depends: R (>= 2.0.0), strucchange, MASS, forecast
Description: BFAST integrates the decomposition of time series into trend, seasonal, and remainder components with methods for detecting and characterizing abrupt changes within the trend and seasonal components. BFAST can be used to analyze different types of satellite image time series and can be applied to other disciplines dealing with seasonal or non-seasonal time series, such as hydrology, climatology, and econometrics. The algorithm can be extended to label detected changes with information on the parameters of the fitted piecewise linear models.
License: GPL (>= 2)
URL: http://bfast.R-Forge.R-project.org/
LazyLoad: yes
LazyData: yes
Repository: CRAN
Repository/R-Forge/Project: bfast
Repository/R-Forge/Revision: 32
Date/Publication: 2009-12-14 19:58:44
Packaged: 2009-12-11 21:13:51 UTC; rforge

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New package openintro with initial version 1.0
Package: openintro
Type: Package
Title: Open Intro data sets and supplement functions
Version: 1.0
Date: 2009-12-13
Author: David M Diez and Christopher D Barr
Maintainer: David M Diez
Description: This package is intended to be a supplement to the Open Intro open source book project. This package contains data sets used in the book along with functions used to make the book's figures.
License: GPL-2
LazyLoad: yes
URL: http://www.openintro.org/
Packaged: Sun Dec 13 18:39:59 2009; diez
Repository: CRAN
Date/Publication: 2009-12-14 07:46:26

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New package boolfun with initial version 0.2.1
Package: boolfun
Title: Cryptographic Boolean Functions
Version: 0.2.1
Date: 2009
Author: F.Lafitte
Description: This package can be used to assess cryptographic properties of Boolean functions (such as nonlinearity, algebraic immunity, resiliency, ...).
Maintainer: Frederic Lafitte
Depends: R (>= 2.3.0), R.oo
License: GPL (>= 3)
Keywords: package, math, logic
Packaged: 2009-12-13 20:30:03 UTC; fred
Repository: CRAN
Date/Publication: 2009-12-14 07:46:23

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Sun, 13 Dec 2009

New package GrassmannOptim with initial version 1.0
Package: GrassmannOptim
Type: Package
Title: Grassmann Manifold Optimization
Version: 1.0
Date: 2009-12-11
Author: Kofi Placid Adragni and Seongho Wu
Maintainer: Kofi Placid Adragni
Depends: Matrix
Description: Optimizing a function F(U), where U is a semi-orthogonal matrix and F is invariant under an orthogonal transformation of U
License: GPL (>= 2)
Packaged: 2009-12-12 00:34:43 UTC; KAdragni
Repository: CRAN
Date/Publication: 2009-12-13 09:46:08

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Fri, 11 Dec 2009

New package rngWELL with initial version 0.9
Package: rngWELL
Type: Package
Title: toolbox for WELL random number generators.
Version: 0.9
Date: 2009-12-10
Author: C code by F. Panneton, P. L'Ecuyer and M. Matsumoto and R port by Christophe Dutang and Petr Savicky .
Maintainer: Christophe Dutang
Description: It is a dedicated package to WELL pseudo random generators. But it is not intended to use it directly, you are strongly __encouraged__ to directly use the 'randtoolbox' package, which depends on this package.
Depends: R (>= 2.6.0)
License: file LICENSE
Encoding: latin1
LazyLoad: yes
Packaged: 2009-12-11 12:54:08 UTC; dutangc
Repository: CRAN
Date/Publication: 2009-12-11 19:01:29

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New package bibtex with initial version 0.1-0
Package: bibtex
Type: Package
Title: bibtex parser
Version: 0.1-0
Date: 2009-12-11
Author: Romain Francois
Maintainer: Romain Francois
Description: Utility to parse a bibtex file
License: GPL-3
LazyLoad: yes
BugReports: http://r-forge.r-project.org/tracker/?atid=1587&group_id=384&func=browse
URL: http://r-forge.r-project.org/projects/highlight/, http://romainfrancois.blog.free.fr/index.php?category/R-package/bibtex
Packaged: 2009-12-11 14:59:42 UTC; romain
Repository: CRAN
Date/Publication: 2009-12-11 18:07:35

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New package BoSSA with initial version 1.0
Package: BoSSA
Type: Package
Title: a Bunch of Structure and Sequence Analysis
Version: 1.0
Date: 2009-12-03
Author: Pierre Lefeuvre
Maintainer: Pierre Lefeuvre
Imports: ape, SoDA
Description: Sort sequence from genbank. Retrieve sequence information from genbank (designed for viruses sequences and retrieve information such as isolation dates and host). Detect group of sequences presenting phylogeography signal. Read PDB file (protein 3D structure file).
License: GPL
LazyLoad: yes
Packaged: Fri Dec 11 08:31:02 2009; pierre
Repository: CRAN
Date/Publication: 2009-12-11 07:03:40

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Thu, 10 Dec 2009

New package SDMTools with initial version 1.0
Package: SDMTools
Type: Package
Title: Tools for processing data associated with species distribution modelling exercises.
Version: 1.0
Date: 2009-11-20
Author: Jeremy VanDerWal, Luke Shoo and Stephanie Januchowski
Maintainer: Jeremy VanDerWal
Depends: adehabitat
Description: This is a set of tools that are useful for applications of species distribution modelling.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2009-12-10 03:18:11 UTC; jc165798
Repository: CRAN
Date/Publication: 2009-12-10 19:56:28

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Wed, 09 Dec 2009

New package doMPI with initial version 0.1-3
Package: doMPI
Type: Package
Title: Foreach parallel adaptor for the Rmpi package
Version: 0.1-3
Author: Steve Weston
Maintainer: Steve Weston
Description: Provides a parallel backend for the %dopar% function using the Rmpi package.
Depends: R (>= 2.5.0), foreach(>= 1.3.0), iterators(>= 1.0.0), Rmpi(>= 0.5-7), utils
Suggests: multicore(>= 0.1-3), nws(>= 1.7.0.0)
License: GPL-2
Packaged: 2009-12-07 19:50:01 UTC; weston
Repository: CRAN
Date/Publication: 2009-12-09 08:53:34

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Mon, 07 Dec 2009

New package Bergm with initial version 1.0
Package: Bergm
Type: Package
Title: Bayesian inference for exponential random graph models
Version: 1.0
Date: 2009-09-27
Author: Alberto Caimo and Nial Friel
Maintainer: Alberto Caimo
Description: Functions implementing Bayesian estimation for exponential random graph models via exchange algorithm
License: GPL (>= 2)
Depends: network, ergm, coda
LazyLoad: yes
Packaged: 2009-12-06 22:11:22 UTC; alb
Repository: CRAN
Date/Publication: 2009-12-07 10:53:49

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Sun, 06 Dec 2009

New package nanop with initial version 1.0
Package: nanop
Type: Package
Title: tools for nanoparticle simulation and PDF calculation
Version: 1.0
Author: Katharine Mullen
Maintainer: Katharine Mullen
Description: This software package implements functions to simulate spherical monoatomic nanoparticles with face-centered cubic structure and calculate the associated pair distribution and total scattering structure functions.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2009-12-06 00:52:56 UTC; kmullen
Repository: CRAN
Date/Publication: 2009-12-06 10:08:39

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New package mecdf with initial version 0.1.0
Package: mecdf
Title: Multivariate ECDF Based Models
Version: 0.1.0
Date: 2009-12-06
Author: CHARLOTTE MAIA
Maintainer: Charlotte Maia
Description: Univariate and multivariate ECDFs. Currently this produces step functions (which is what one would expect). Methods for producing smooth(ish) distribution functions are being considered. Note, this package is still experimental.
License: GPL (>= 2)
Depends: oosp (>= 0.2.0)
Packaged: 2009-12-06 09:15:30 UTC; maia
Repository: CRAN
Date/Publication: 2009-12-06 10:15:06

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New package Boruta with initial version 1.0
Package: Boruta
Title: Boruta -- a tool for finding significant attributes in information systems
Version: 1.0
Date: 2009-07-30
Depends: R (>= 2.0.0), randomForest
Suggests: mlbench
Author: Algorithm by Witold R. Rudnicki , R implementation by Miron B. Kursa .
Description: Boruta is a feature selection algorithm based on a randomForest predictor. It selects the full set of all important attributes by comparing original attributes importance with datum importance of their randomised copies.
Maintainer: Miron B. Kursa
License: GPL (>= 2)
Packaged: 2009-12-05 15:46:27 UTC; mbq
Repository: CRAN
Date/Publication: 2009-12-06 10:08:07

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