Fri, 22 Jul 2016

New package EmiStatR with initial version 1.2.0
Package: EmiStatR
Type: Package
Title: Estimation of Wastewater Emissions in Combined Sewer Systems
Version: 1.2.0
Date: 2016-07-22
Author: J.A. Torres-Matallana [aut, cre] K. Klepiszewski [aut, cre] U. Leopold [ctb] G.B.M. Heuvelink [ctb]
Maintainer: J.A. Torres-Matallana <arturo.torres@list.lu>
Description: The EmiStatR provides a fast and parallelised calculator to estimate combined wastewater emissions. It supports the planning and design of urban drainage systems, without the requirement of extensive simulation tools. The EmiStatR package implements modular R methods. This enables to add new functionalities through the R framework. Furthermore, EmiStatR was implemented with an interactive user interface with sliders and input data exploration.
License: GPL (>= 3)
Depends: methods, foreach, parallel, doParallel, lattice, shiny
NeedsCompilation: yes
Packaged: 2016-07-22 18:50:12 UTC; torres
Repository: CRAN
Date/Publication: 2016-07-22 23:52:03

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New package sizeMat with initial version 0.1.0
Package: sizeMat
Type: Package
Title: Estimate Size at Sexual Maturity
Version: 0.1.0
Date: 2016-07-19
Authors@R: c(person("Josymar", "Torrejon-Magallanes", email = "ejosymart@gmail.com", role = c("cre", "aut")), person("Wencheng", "Lau-Medrano", role = "ctb"))
Maintainer: Josymar Torrejon-Magallanes <ejosymart@gmail.com>
Description: Contains functions to estimate morphometric and gonadal size at sexual maturity for organisms, usually fish and invertebrates. It includes methods for classification based on relative growth (using principal components analysis, hierarchical clustering, discriminant analysis), logistic regression (Frequentist or Bayes), parameters estimation and some basic plots.
Depends: R (>= 2.15)
Imports: MCMCpack, matrixStats, MASS, grDevices, graphics, stats, utils
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
License: GPL-2
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-22 16:16:10 UTC; Josymar
Author: Josymar Torrejon-Magallanes [cre, aut], Wencheng Lau-Medrano [ctb]
Repository: CRAN
Date/Publication: 2016-07-22 19:36:07

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New package rbgm with initial version 0.0.4
Package: rbgm
Type: Package
Title: Tools for 'Box Geometry Model' (BGM) Files and Topology for the Atlantis Ecosystem Model
Version: 0.0.4
Authors@R: c( person("Michael D.", "Sumner", , "mdsumner@gmail.com", c("aut", "cre")) )
Depends: R (>= 3.2.2), raster, sp
Imports: dplyr, geosphere, tibble (>= 1.1)
Suggests: bgmfiles, covr, graticule, knitr, rgdal, rmarkdown, roxygen2, scales, testthat
Description: Facilities for working with Atlantis box-geometry model (BGM) files. Atlantis is a deterministic, biogeochemical, whole-of-ecosystem model. Functions are provided to read from BGM files directly, preserving their internal topology, as well as helper functions to generate 'Spatial' objects. This functionality aims to simplify the creation and modification of box and geometry as well as the ability to integrate with other data sources.
NeedsCompilation: no
ByteCompile: yes
License: GPL-3
RoxygenNote: 5.0.1
URL: https://github.com/AustralianAntarcticDivision/rbgm/, http://atlantis.cmar.csiro.au/
BugReports: https://github.com/AustralianAntarcticDivision/rbgm/issues/
VignetteBuilder: knitr
Packaged: 2016-07-22 06:31:34 UTC; mdsumner
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-22 19:29:23

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New package MFPCA with initial version 1.0
Package: MFPCA
Type: Package
Title: Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains
Version: 1.0
Date: 2016-07-18
Authors@R: person("Clara", "Happ", email = "clara.happ@stat.uni-muenchen.de", role = c("aut", "cre"))
Author: Clara Happ [aut, cre]
Maintainer: Clara Happ <clara.happ@stat.uni-muenchen.de>
Description: Calculate a multivariate functional principal component analysis for data observed on different dimensional domains. The estimation algorithm relies on univariate basis expansions for each element of the multivariate functional data. Multivariate and univariate functional data objects are represented by S4 classes for this type of data implemented in the package 'funData'.
License: GPL-2
Imports: abind, foreach, irlba, Matrix, methods, mgcv, plyr, stats
Depends: R (>= 3.1.0), funData
Suggests: testthat
NeedsCompilation: yes
SystemRequirements: libfftw3 (>= 3.3.4)
RoxygenNote: 5.0.1
Packaged: 2016-07-22 16:02:31 UTC; happ
Repository: CRAN
Date/Publication: 2016-07-22 19:29:25

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New package CorrectOverloadedPeaks with initial version 1.2.13
Package: CorrectOverloadedPeaks
Type: Package
Title: Correct Overloaded Peaks from GC-APCI-MS Data
Version: 1.2.13
Date: 2016-07-22
Authors@R: person("Jan", "Lisec", role = c("aut", "cre"), email = "jan.lisec@charite.de")
Author: Jan Lisec [aut, cre]
Description: Analyzes and modifies metabolomics raw data (generated using GC-APCI-MS, Gas Chromatography-Atmospheric Pressure Chemical Ionization-Mass Spectrometry) to correct overloaded signals, i.e. ion intensities exceeding detector saturation leading to a cut-off peak. Data in xcmsRaw format are accepted as input and mzXML files can be processed alternatively. Overloaded signals are detected automatically and modified using an Gaussian or Isotopic-Ratio approach, QC plots are generated and corrected data are stored within the original xcmsRaw or mzXML respectively to allow further processing.
License: GPL-3
URL: http://dx.doi.org/10.1021/acs.analchem.6b02515
Depends: R(>= 2.10.0)
Imports: xcms, XML, digest, caTools
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-22 07:20:23 UTC; lisecj
Maintainer: Jan Lisec <jan.lisec@charite.de>
Repository: CRAN
Date/Publication: 2016-07-22 19:32:08

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New package humidity with initial version 0.1.0
Package: humidity
Type: Package
Title: An R Package for Calculating Water Vapor Measures from Temperature and Relative Humidity
Version: 0.1.0
Author: Jun Cai <cai-j12@mails.tsinghua.edu.cn>
Maintainer: Jun Cai <cai-j12@mails.tsinghua.edu.cn>
Description: Vapor pressure, absolute humidity, specific humidity, and mixing ratio are commonly used water vapor measures in meteorology. This R package provides functions for calculating saturation vapor pressure (hPa), partial water vapor pressure (Pa), absolute humidity (kg/m^3), specific humidity (kg/kg), and mixing ratio (kg/kg) from temperature (K) and relative humidity (%).
Depends: R (>= 2.10)
License: GPL-3
URL: https://github.com/caijun/humidity
BugReports: https://github.com/caijun/humidity/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-22 06:01:33 UTC; tonytsai
Repository: CRAN
Date/Publication: 2016-07-22 14:51:43

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Thu, 21 Jul 2016

New package IPtoCountry with initial version 0.0.1
Package: IPtoCountry
Title: Convert IP Addresses to Country Names or Full Location with Geoplotting
Version: 0.0.1
Date: 2016-07-21
Authors@R: c( person(c("Ronald", "E."), "Robertson", email = "robertson.ron@husky.neu.edu", role = c("cre", "aut")), person(c("Felix", "W."), "Tran", email = "felix.2930@gmail.com", role = "aut"), person("Jonathan", "Mejia", email = "mejiajon@yahoo.com", role = "aut"), person("Christine", "Mourani", email = "cmourani12@yahoo.com", role = "aut") )
Description: Tools for identifying the origins of IP addresses. Includes functions for converting IP addresses to country names, location details (region, city, zip, latitude, longitude), IP codes, binary values, as well as a function for plotting IP locations on a world map. This product includes IP2Location LITE data available from <http://www.ip2location.com> and is is available by Creative Commons Attribution-ShareAlike 4.0 Interational license (CC-BY-SA 4.0).
Depends: R (>= 3.2.3)
Imports: data.table, ggplot2, dtables, maps, scales, devtools, install.load
License: GPL-3
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-21 22:58:57 UTC; rer
Author: Ronald E. Robertson [cre, aut], Felix W. Tran [aut], Jonathan Mejia [aut], Christine Mourani [aut]
Maintainer: Ronald E. Robertson <robertson.ron@husky.neu.edu>
Repository: CRAN
Date/Publication: 2016-07-22 01:31:05

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New package ie2misc with initial version 0.8.0
Package: ie2misc
Title: Irucka Embry's Miscellaneous USGS Functions
Version: 0.8.0
Author: Irucka Embry [aut, cre] and Anne Hoos [ctb]
Maintainer: Irucka Embry <iembry@usgs.gov>
Depends: R (>= 3.0.0), tcltk, data.table (>= 1.9.4), stats, utils, tools
Imports: readxl, openxlsx, gWidgets2, gWidgets2tcltk, stringi, qdap, reader, lubridate
Suggests: ie2miscdata, iemisc, iemiscdata, Rcpp (>= 0.11.5), pracma
Description: A collection of Irucka Embry's miscellaneous USGS functions (processing .exp and .psf files, statistical error functions, "+" dyadic operator for use with NA, creating ADAPS and QW spreadsheet files, calculating saturated enthalpy). Irucka created these functions while a Cherokee Nation Technology Solutions (CNTS) United States Geological Survey (USGS) Contractor and/or USGS employee.
URL: https://github.com/iembry-USGS/ie2misc
BugReports: https://github.com/iembry-USGS/ie2misc/issues
License: CC0
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at http://www.usgs.gov/visual-id/credit_usgs.html#copyright
LazyData: true
Encoding: UTF-8
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-20 01:28:41 UTC; uoxyh
Repository: CRAN
Date/Publication: 2016-07-22 01:33:35

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New package icdGLM with initial version 1.0.0
Package: icdGLM
Type: Package
Title: EM by the Method of Weights for Incomplete Categorical Data in Generlized Linear Models
Version: 1.0.0
Date: 2016-07-21
Author: Lorenz Brachtendorf <Lorenz.Brachtendorf@gmx.de>, Stephan Dlugosz <stephan.dlugosz@googlemail.com>
Maintainer: Stephan Dlugosz <stephan.dlugosz@googlemail.com>
Description: Provides an estimator for generalized linear models with incomplete data for discrete covariates. The estimation is based on the EM algorithm by the method of weights by Ibrahim (1990) <DOI:10.2307/2290013>.
License: GPL (>= 2)
Depends: R (>= 3.3.0)
Imports: stats, Matrix
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-21 18:26:34 UTC; sdlugosz
Repository: CRAN
Date/Publication: 2016-07-22 01:26:44

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New package GetHFData with initial version 1.0.0
Package: GetHFData
Title: Download and Aggregate High Frequency Trading Data from Bovespa
Version: 1.0.0
Authors@R: person("Marcelo", "Perlin", email = "marceloperlin@gmail.com", role = c("aut", "cre"))
Description: Downloads and aggregates high frequency trading data for Brazilian instruments directly from Bovespa ftp site <ftp://ftp.bmf.com.br/MarketData/>.
Depends: R (>= 3.3.0)
Imports: stringr,stats,RCurl, lubridate, readr, utils, curl,dplyr
License: GPL-2
LazyData: true
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown, testthat, ggplot2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-21 20:44:30 UTC; 00141390
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-22 01:25:01

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New package validann with initial version 1.0.0
Package: validann
Type: Package
Title: Validation Tools for Artificial Neural Networks
Version: 1.0.0
Date: 2016-07-21
Authors@R: person("Greer B.", "Humphrey", email = "greer.humphrey@adelaide.edu.au", role = c("aut", "cre"))
Description: Methods and tools for analysing and validating the outputs and modelled functions of artificial neural networks (ANNs) in terms of predictive, replicative and structural validity. Also provides a method for fitting feed-forward ANNs with a single hidden layer.
Depends: R (>= 3.1.0)
Imports: moments
Suggests: nnet, knitr, rmarkdown
License: GPL (>= 2)
URL: http://github.com/gbhumphrey1/validann
BugReports: http://github.com/gbhumphrey1/validann/issues
NeedsCompilation: no
Packaged: 2016-07-21 13:11:35 UTC; ghumphrey
Author: Greer B. Humphrey [aut, cre]
Maintainer: Greer B. Humphrey <greer.humphrey@adelaide.edu.au>
Repository: CRAN
Date/Publication: 2016-07-21 19:09:23

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New package fasteraster with initial version 1.0
Package: fasteraster
Type: Package
Title: Raster Images Processing and Vector Recognition
Version: 1.0
Date: 2016-07-09
Author: Andy Bosyi
Maintainer: Andy Bosyi <andy@bosyi.com>
Description: If there is a need to recognise edges on a raster image or a bitmap or any kind of a matrix, one can find packages that does only 90 degrees vectorization. Typically the nature of artefact images is linear and can be vectorized in much more efficient way than draw a series of 90 degrees lines. The fasteraster package does recognition of lines using only one pass.
License: GPL (>= 2)
Imports: Rcpp (>= 0.12.5)
LinkingTo: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-07-21 09:11:52 UTC; andy
Repository: CRAN
Date/Publication: 2016-07-21 14:14:56

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Wed, 20 Jul 2016

New package BayesianNetwork with initial version 0.1.0
Package: BayesianNetwork
Version: 0.1.0
Title: Bayesian Network Modeling and Analysis
Description: A Shiny web application for creating interactive Bayesian Network models, learning the structure and parameters of Bayesian networks, and utilities for classical network analysis.
URL: https://github.com/paulgovan/bayesiannetwork
BugReports: https://github.com/paulgovan/bayesiannetwork/issues
Authors@R: person("Paul", "Govan", email = "pgovan1@aggienetwork.com", role = c("aut", "cre"))
Depends: R (>= 2.10.0)
License: Apache License | file LICENSE
LazyData: TRUE
Imports: bnlearn, d3heatmap, lattice, networkD3, rhandsontable, shiny, shinydashboard
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-20 23:37:57 UTC; paulgovan
Author: Paul Govan [aut, cre]
Maintainer: Paul Govan <pgovan1@aggienetwork.com>
Repository: CRAN
Date/Publication: 2016-07-21 02:10:34

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New package USGSstates2k with initial version 1.0.0
Package: USGSstates2k
Title: United States of America Map with the NAD 1983 Albers Projection
Version: 1.0.0
Author: Irucka Embry [aut]
Maintainer: Irucka Embry <iembry@usgs.gov>
Depends: R (>= 2.14.0), sp (>= 1.1-0)
Suggests: rgdal
Description: A map of the USA from the United States Geological Survey (USGS). Irucka worked with this data set while a Cherokee Nation Technology Solutions (CNTS) USGS Contractor and/or USGS employee.
URL: https://github.com/iembry-USGS/USGSstates2k
BugReports: https://github.com/iembry-USGS/USGSstates2k/issues
License: CC0
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at http://www.usgs.gov/visual-id/credit_usgs.html#copyright
LazyData: true
Encoding: UTF-8
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-20 01:39:32 UTC; uoxyh
Repository: CRAN
Date/Publication: 2016-07-20 23:52:47

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New package scientoText with initial version 0.1
Package: scientoText
Type: Package
Title: Text & Scientometric Analytics
Version: 0.1
Date: 2016-07-20
Author: Ashraf Uddin
Maintainer: Ashraf Uddin <mdaakib18@gmail.com>
Description: It involves bibliometric indicators calculation from bibliometric data.It also deals pattern analysis using the text part of bibliometric data.The bibliometric data are obtained from mainly Web of Science and Scopus.
License: GPL-3
LazyData: TRUE
Imports: stringr, tm, utils
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-20 16:52:06 UTC; rajesh
Repository: CRAN
Date/Publication: 2016-07-20 23:55:39

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New package largeList with initial version 0.1.0
Package: largeList
Type: Package
Title: Serialization Interface for Large List Objects
Version: 0.1.0
Date: 2016-07-19
Author: Yuchun Zhang
Maintainer: Yuchun Zhang <yczhangvrc@gmail.com>
Depends: R (>= 3.2.0)
Description: Functions to write or append a R list to a file, read or remove elements from it without restoring the whole list.
License: GPL (>= 2)
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-07-20 19:51:58 UTC; yuchun
Repository: CRAN
Date/Publication: 2016-07-20 23:49:47

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New package ie2miscdata with initial version 1.0.0
Package: ie2miscdata
Title: Irucka Embry's Miscellaneous USGS Data Collection
Version: 1.0.0
Author: Irucka Embry [aut, cre]
Maintainer: Irucka Embry <iembry@usgs.gov>
Depends: R (>= 2.14.1)
Suggests: install.load, ie2misc, iemisc, iemiscdata, data.table (>= 1.9.4), USGSstates2k, spatstat, maptools, ggplot2, stringi, qdap, lubridate, knitr, rmarkdown
Description: A collection of Irucka Embry's miscellaneous USGS data sets (Environmental/Water Resources Engineering). Irucka created these data sets while a Cherokee Nation Technology Solutions (CNTS) United States Geological Survey (USGS) Contractor and/or USGS employee.
URL: https://github.com/iembry-USGS/ie2miscdata
BugReports: https://github.com/iembry-USGS/ie2miscdata/issues
License: CC0
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at http://www.usgs.gov/visual-id/credit_usgs.html#copyright
LazyData: true
Encoding: UTF-8
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-20 01:13:24 UTC; uoxyh
Repository: CRAN
Date/Publication: 2016-07-21 00:50:34

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New package ggpubr with initial version 0.1.0
Package: ggpubr
Type: Package
Title: 'ggplot2' Based Publication Ready Plots
Version: 0.1.0
Date: 2016-07-28
Authors@R: c( person("Alboukadel", "Kassambara", role = c("aut", "cre"), email = "alboukadel.kassambara@gmail.com"))
Description: 'ggplot2' is an excellent and flexible package for elegant data visualization in R. However the default generated plots requires some formatting before we can send them for publication. Furthermore, to customize a 'ggplot', the syntax is opaque and this raises the level of difficulty for researchers with no advanced R programming skills. 'ggpubr' provides some easy-to-use functions for creating and customizing 'ggplot2'- based publication ready plots.
License: GPL-2
LazyData: TRUE
Depends: R (>= 3.1.0), ggplot2
Imports: ggrepel, grid, ggsci, plyr, stats, utils
Suggests: knitr, scales
URL: http://www.sthda.com/english/rpkgs/ggpubr
BugReports: https://github.com/kassambara/ggpubr/issues
RoxygenNote: 5.0.1
Collate: 'desc_statby.R' 'diff_express.R' 'utilities.R' 'ggpar.R' 'ggbarplot.R' 'ggboxplot.R' 'ggdensity.R' 'stat_conf_ellipse.R' 'stat_chull.R' 'ggdotchart.R' 'ggdotplot.R' 'ggecdf.R' 'ggerrorplot.R' 'gghistogram.R' 'ggline.R' 'ggmaplot.R' 'ggpie.R' 'ggqqplot.R' 'ggscatter.R' 'ggstripchart.R' 'ggviolin.R' 'show_line_types.R' 'show_point_shapes.R' 'stat_mean.R' 'theme_pubr.R'
NeedsCompilation: no
Packaged: 2016-07-20 16:37:41 UTC; alboukadel
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-20 20:09:54

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New package udapi with initial version 0.1.0
Package: udapi
Type: Package
Title: Urban Dictionary API Client
Version: 0.1.0
Date: 2016-07-19
Author: Oliver Keyes [aut, cre]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Description: A client for the Urban Dictionary <http://www.urbandictionary.com/> API.
License: MIT + file LICENSE
LazyData: TRUE
RoxygenNote: 5.0.1
Imports: httr, curl
BugReports: https://github.com/Ironholds/udapi/issues
URL: https://github.com/Ironholds/udapi/
Suggests: testthat
NeedsCompilation: no
Packaged: 2016-07-20 15:38:24 UTC; ironholds
Repository: CRAN
Date/Publication: 2016-07-20 18:03:28

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New package mvst with initial version 1.0
Package: mvst
Type: Package
Title: Bayesian Inference for the Multivariate Skew-t Model
Version: 1.0
Date: 2016-07-20
Author: Brunero Liseo, Antonio Parisi
Maintainer: Antonio Parisi <antonio.parisi@uniroma2.it>
Description: Estimates the multivariate skew-t and nested models, as described in the articles Liseo, B., Parisi, A. (2013). Bayesian inference for the multivariate skew-normal model: a population Monte Carlo approach. Comput. Statist. Data Anal. <doi:10.1016/j.csda.2013.02.007> and in Parisi, A., Liseo, B. Objective Bayesian analysis for the multivariate skew-t model (to appear).
License: GPL-3
Imports: MCMCpack, mvtnorm, mnormt
Packaged: 2016-07-20 14:14:58 UTC; antonio
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-07-20 18:02:56

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New package ChIPtest with initial version 1.0
Package: ChIPtest
Type: Package
Title: Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data
Version: 1.0
Date: 2017-07-07
Author: Vicky Qian Wu ; Kyoung-Jae Won ; Hongzhe Li <hongzhe@upenn.edu>
Maintainer: Vicky Qian Wu <wuqian7@gmail.com>
Description: Nonparametric Tests to identify the differential enrichment region for two conditions or time-course ChIP-seq data. It includes: data preprocessing function, estimation of a small constant used in hypothesis testing, a kernel-based two sample nonparametric test, two assumption-free two sample nonparametric test.
License: GPL (>= 2.15.1)
Packaged: 2016-07-20 13:27:43 UTC; Lin Chai
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-07-20 17:59:16

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New package dggridR with initial version 0.1.5
Package: dggridR
Type: Package
Title: Discrete Global Grids for R
Version: 0.1.5
Date: 2016-07-19
Author: Richard Barnes [aut, cre], Kevin Sahr [ctb], Gerald Evenden [ctb], Angus Johnson [ctb], Frank Warmerdam [ctb]
Maintainer: Richard Barnes <rbarnes@umn.edu>
NeedsCompilation: yes
Depends: R (>= 3.0.0), rgdal (>= 1.1), ggplot2 (>= 2.1), dplyr (>= 0.4)
Suggests: knitr, rmarkdown, maps, mapproj, R.rsp
License: MIT + file LICENCE
Authors@R: c(person("Richard", "Barnes", role = c("aut", "cre"), email = "rbarnes@umn.edu"), person("Kevin", "Sahr", role = "ctb", email = "sahrk@sou.edu"), person("Gerald", "Evenden", role = "ctb"), person("Angus", "Johnson", role = "ctb"), person("Frank", "Warmerdam", role = "ctb"))
Description: Spatial analyses involving binning require that every bin have the same area, but this is impossible using a rectangular grid laid over the Earth or over any projection of the Earth. Discrete global grids use hexagons, triangles, and diamonds to overcome this issue, overlaying the Earth with equally-sized bins. This package provides utilities for working with discrete global grids, along with utilities to aid in plotting such data.
URL: https://github.com/r-barnes/dggridR/
BugReports: https://github.com/r-barnes/dggridR/
RoxygenNote: 5.0.1
VignetteBuilder: knitr, R.rsp
Packaged: 2016-07-19 23:15:34 UTC; rick
Repository: CRAN
Date/Publication: 2016-07-20 09:54:02

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New package AntAngiCool with initial version 1.1
Package: AntAngiCool
Type: Package
Title: AntiAngiogenic
Version: 1.1
Date: 2016-07-19
Author: Babak Khorsand
Maintainer: Babak Khorsand <khorsand80@yahoo.com>
Description: Machine learning based package to predict anti-angiogenic peptides using heterogeneous sequence descriptors.
License: GPL-2
RoxygenNote: 5.0.1
Depends: caret,rJava,RWeka,rpart, R(>= 2.10.0)
NeedsCompilation: no
Packaged: 2016-07-20 05:53:48 UTC; Challenger1980
Repository: CRAN
Date/Publication: 2016-07-20 09:46:12

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Tue, 19 Jul 2016

New package CorrToolBox with initial version 1.0
Package: CorrToolBox
Type: Package
Title: Modeling Correlational Magnitude Transformations in Discretization Contexts
Version: 1.0
Date: 2016-07-19
Author: Rawan Allozi, Hakan Demirtas
Maintainer: Rawan Allozi <ralloz2@uic.edu>
Description: Modeling the correlation transitions under specified distributional assumptions within the realm of discretization in the context of the latency and threshold concepts.
License: GPL-2 | GPL-3
Imports: BinNonNor, BinOrdNonNor, GenOrd, moments, mvtnorm, psych
NeedsCompilation: no
Repository: CRAN
Packaged: 2016-07-19 21:33:05 UTC; rawanallozi
Date/Publication: 2016-07-20 00:58:34

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New package bmlm with initial version 1.0.0
Package: bmlm
Title: Bayesian Multilevel Mediation
Version: 1.0.0
Date: 2016-07-18
Authors@R: person("Matti", "Vuorre", email = "mv2521@columbia.edu", role = c("aut", "cre"))
Description: Easy estimation of Bayesian multilevel mediation models with Stan.
URL: https://github.com/mvuorre/bmlm/
BugReports: http://github.com/mvuorre/bmlm/issues/
License: GPL (>= 3)
LazyData: true
Depends: R (>= 3.1.2), rstan
Imports: ggplot2 (>= 2.1.0)
Suggests: qgraph, knitr, rmarkdown, reshape2, dplyr, ReporteRs
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-19 18:22:24 UTC; Matti
Author: Matti Vuorre [aut, cre]
Maintainer: Matti Vuorre <mv2521@columbia.edu>
Repository: CRAN
Date/Publication: 2016-07-20 01:07:36

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New package bgmfiles with initial version 0.0.5
Package: bgmfiles
Title: Example BGM Files for the Atlantis Ecosystem Model
Version: 0.0.5
Authors@R: c( person("Michael D.", "Sumner", , "mdsumner@gmail.com", c("aut", "cre")) )
Description: A collection of box-geometry model (BGM) files for the Atlantis ecosystem model. Atlantis is a deterministic, biogeochemical, whole-of-ecosystem model.
License: CC0
RoxygenNote: 5.0.1
Suggests: testthat, covr
BugReports: https://github.com/AustralianAntarcticDivision/bgmfiles/issues/
URL: https://github.com/AustralianAntarcticDivision/bgmfiles/, http://atlantis.cmar.csiro.au/
NeedsCompilation: no
Packaged: 2016-07-19 22:09:07 UTC; mdsumner
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-20 01:08:47

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New package rslp with initial version 0.0.1
Package: rslp
Type: Package
Title: A Stemming Algorithm for the Portuguese Language
Version: 0.0.1
Author: Daniel Falbel
Maintainer: Daniel Falbel <dfalbel@gmail.com>
Description: Implements the "Stemming Algorithm for the Portuguese Language" <DOI:10.1109/SPIRE.2001.10024>.
URL: https://github.com/dfalbel/rslp
License: MIT + file LICENSE
LazyData: TRUE
Encoding: UTF-8
RoxygenNote: 5.0.1
Imports: stringr, stringi, plyr, rvest, magrittr, Rcpp, xml2
Suggests: dplyr, testthat, covr
NeedsCompilation: no
Packaged: 2016-07-19 14:17:39 UTC; dfalbel
Repository: CRAN
Date/Publication: 2016-07-19 19:11:58

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New package QRegVCM with initial version 1.0
Package: QRegVCM
Type: Package
Title: Quantile Regression in Varying-Coefficient Models
Version: 1.0
Date: 2016-07-19
Author: Andriyana, Y. with contribution from Gijbels, I.
Maintainer: "Andriyana.Y" <y.andriyana@unpad.ac.id>
Description: Quantile regression in varying-coefficient models (VCM) using one particular nonparametric technique called P-splines. The functions can be applied on three types of VCM; (1) Homoscedastic VCM, (2) Simple heteroscedastic VCM, and (3) General heteroscedastic VCM.
Depends: R (>= 3.1.3), quantreg, SparseM, truncSP
License: GPL-2
NeedsCompilation: no
Packaged: 2016-07-19 14:54:37 UTC; unpd
Repository: CRAN
Date/Publication: 2016-07-19 18:57:11

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New package VariableScreening with initial version 0.1.0
Package: VariableScreening
Type: Package
Title: High-Dimensional Screening for Semiparametric Longitudinal Regression
Version: 0.1.0
Authors@R: c( person("Runze","Li", email = "runzelipsu@gmail.com", role = "aut"), person("Wanghuan","Chu", email = "dqchuwh@gmail.com", role = "aut"), person("Liying","Huang", email = "lxh37@PSU.EDU", role = c("aut","cre")), person("John","Dziak", email = "jjd264@psu.edu", role ="aut"))
Depends: R (>= 3.2.1)
Description: Implements a screening procedure proposed by Chu, Li, and Reimherr (2016) for varying coefficient longitudinal models with ultra- high dimensional predictors <http://imstat.org/aoas/next_issue.html>. The effect of each predictor is allowed to vary over time, approximated by a low-dimensional B-spline. Within-subject correlation is handled using a generalized estimation equation approach with structure specified by the user. Variance is allowed to change over time, also approximated by a B-spline.
Copyright: The Pennsylvania State University
Imports: gee, expm, splines, MASS
License: GPL (>= 2)
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-18 18:18:00 UTC; admin_lxh37
Author: Runze Li [aut], Wanghuan Chu [aut], Liying Huang [aut, cre], John Dziak [aut]
Maintainer: Liying Huang <lxh37@PSU.EDU>
Repository: CRAN
Date/Publication: 2016-07-19 11:21:33

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New package BarcodingR with initial version 1.0-1
Package: BarcodingR
Title: Species Identification using DNA Barcodes
Version: 1.0-1
Authors@R: c(person("Ai-bing", "ZHANG", role = c("aut", "cre"),email = "Zhangab2008@mail.cnu.edu.cn"),person("Meng-di", "HAO", role = c("aut"),email = "dreamdy521@163.com"),person("Cai-qing", "YANG", role = c("aut"),email = "279226090@qq.com"),person("Zhi-yong", "SHI", role = c("aut"),email = "zhiyong-shi@163.com"))
Description: To perform species identification using DNA barcodes.
Depends: R (>= 3.2.1),ape,nnet,class,stats,sp
Suggests: pegas,cluster,compiler,cclust,utils
License: GPL-2
LazyData: true
ByteCompile: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-19 03:03:54 UTC; root
Author: Ai-bing ZHANG [aut, cre], Meng-di HAO [aut], Cai-qing YANG [aut], Zhi-yong SHI [aut]
Maintainer: Ai-bing ZHANG <Zhangab2008@mail.cnu.edu.cn>
Repository: CRAN
Date/Publication: 2016-07-19 10:06:11

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Mon, 18 Jul 2016

New package tranSurv with initial version 1.0-0
Package: tranSurv
Type: Package
Title: Estimating a Survival Distribution in the Presence of Dependent Left Truncation and Right Censoring
Version: 1.0-0
Date: 2016-07-18
Author: Sy Han (Steven) Chiou
Maintainer: Sy Han (Steven) Chiou <schiou@hsph.harvard.edu>
Description: A structural transformation model for a latent, quasi-independent truncation time as a function of the observed dependent truncation time and the event time, and an unknown dependence parameter. The dependence parameter is chosen to minimize the conditional Kendall's tau. The marginal distribution for the truncation time and the event time are completely left unspecified.
License: GPL (>= 3)
LazyLoad: yes
Imports: survival, SQUAREM
Packaged: 2016-07-18 22:01:39 UTC; steven
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-07-19 02:33:36

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New package SuperRanker with initial version 1.0.1
Package: SuperRanker
Type: Package
Title: Sequential Rank Agreement
Version: 1.0.1
Date: 2016-07-19
Author: Claus Thorn Ekstrøm and Thomas Alexander Gerds
Maintainer: Claus Thorn Ekstrøm <ekstrom@sund.ku.dk>
Description: Tools for analysing the aggreement of two or more rankings of the same items. Examples are importance rankings of predictor variables and risk predictions of subjects. Benchmarks for agreement are computed based on random permutation and bootstrap.
License: GPL (>= 2)
Imports: stats, graphics, Rcpp (>= 0.11.5), prodlim (>= 1.5.7)
LinkingTo: Rcpp
RoxygenNote: 5.0.1
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2016-07-19 00:02:06 UTC; cld189
Repository: CRAN
Date/Publication: 2016-07-19 02:45:01

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New package simPATHy with initial version 0.1
Package: simPATHy
Type: Package
Title: Simulation Model of Expression Data for Pathway Analysis
Version: 0.1
Date: 2016-07-18
Authors@R: c(person("Elisa", "Salviato", email = "elisa.salviato.88@gmail.com", role = c("aut", "cre")), person("Vera", "Djordjilovic", email = "djordjilovic@stat.unipd.it", role = "aut"), person("Chiara","Romualdi",email="chiara.romualdi@unipd.it",role="aut"), person("Monica","Chiogna",email="monica@stat.unipd.it",role="aut"))
Description: Simulate data from a Gaussian graphical model or a Gaussian Bayesian network in two conditions. Given a covariance matrix of a reference condition simulate plausible dysregulations.
Depends: R (>= 2.10)
Imports: mvtnorm, gRbase, graph, igraph, ggm, qpgraph, R.utils, htmlwidgets, shiny, shinydashboard ,grDevices, graphics, stats
License: AGPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-18 16:10:47 UTC; Elisetta
Author: Elisa Salviato [aut, cre], Vera Djordjilovic [aut], Chiara Romualdi [aut], Monica Chiogna [aut]
Maintainer: Elisa Salviato <elisa.salviato.88@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-18 20:08:47

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New package sensiPhy with initial version 0.5.0
Package: sensiPhy
Title: Sensitivity Analysis for Comparative Methods
Version: 0.5.0
Date: 2016-07-18
Authors@R: c( person("Gustavo","Paterno", email = "paternogbc@gmail.com", role = c("cre","aut")), person("Gijsbert", "Werner", email = "gijsbert.werner@zoo.ox.ac.uk", role = "aut"), person("Caterina", "Penone", email = "caterina.penone@gmail.com", role = "aut"))
Maintainer: Gustavo Paterno <paternogbc@gmail.com>
Description: An implementation of sensitivity analysis in phylogenetic regression models, for both linear and logistic phylogenetic regressions. The package is an umbrella of statistical and graphical methods that estimate and report different types of uncertainty in PGLS models: (i) Sampling uncertainty (sample size; influential species and clades). (ii) Phylogenetic uncertainty. (iii) Data uncertainty (intraspecific variation and measurement error).
Depends: R (>= 3.1.0), ape (>= 3.3), phylolm (>= 2.4), ggplot2 (>= 2.1.0)
License: GPL-2
URL: https://github.com/paternogbc/sensiPhy
BugReports: https://github.com/paternogbc/sensiPhy/issues
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-18 16:10:15 UTC; gugab
Author: Gustavo Paterno [cre, aut], Gijsbert Werner [aut], Caterina Penone [aut]
Repository: CRAN
Date/Publication: 2016-07-18 20:37:24

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New package Chaos01 with initial version 1.0.0
Package: Chaos01
Title: 0-1 Test for Chaos
Version: 1.0.0
Authors@R: person("Tomas", "Martinovic", email = "tomas.martinovic@vsb.cz", role = c("aut", "cre"))
Description: Computes and plot the results of the 0-1 test for chaos proposed by Gottwald and Melbourne (2004) <DOI:10.1137/080718851>. The algorithm is available in parallel for the independent values of parameter c.
Depends: R (>= 3.1.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
Imports: graphics, stats
Suggests: parallel, Rmpi
RoxygenNote: 5.0.1.9000
Packaged: 2016-07-18 15:43:34 UTC; martinovic
Author: Tomas Martinovic [aut, cre]
Maintainer: Tomas Martinovic <tomas.martinovic@vsb.cz>
Repository: CRAN
Date/Publication: 2016-07-18 20:33:42

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New package BoardGames with initial version 1.0.0
Package: BoardGames
Type: Package
Title: Board Games and Tools for Building Board Games
Version: 1.0.0
Authors@R: c(person("Derek", "Qiu", role = c("aut", "cre"), email = "qiu.derek.d@gmail.com"))
Description: Tools for constructing board/grid based games, as well as readily available game(s) for your entertainment.
Depends: R (>= 3.0.2)
License: GPL (>= 2)
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-18 18:25:23 UTC; admin123
Author: Derek Qiu [aut, cre]
Maintainer: Derek Qiu <qiu.derek.d@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-18 20:37:26

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New package statTarget with initial version 1.2.0
Package: statTarget
Type: Package
Title: Statistical Analysis of Metabolite Profile
Version: 1.2.0
Date: 2016-07-014
Author: Hemi Luan
Maintainer: Hemi Luan <hemi.luan@gmail.com>
Depends: R (>= 3.3.0),gWidgets2
Imports: randomForest,plyr,LMGene,pracma,pROC,robustbase,utils, grDevices,graphics,stats,rrcov, RGtk2,pls
Suggests: car, pdist, testthat, impute, gWidgetsRGtk2
Description: A easy to use tool provides a graphical user interface for quality control based signal correction, integration of metabolomic data from multiple batches, and the comprehensive statistic analysis for non-targeted and targeted approaches.
License: GPL (>= 2)
URL: https://github.com/13479776
biocViews: Metabolomics, MassSpectrometry
RoxygenNote: 5.0.1
LazyData: true
NeedsCompilation: no
Packaged: 2016-07-18 00:32:38 UTC; Hees
Repository: CRAN
Date/Publication: 2016-07-18 16:15:52

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New package shinyTime with initial version 0.1.0
Package: shinyTime
Type: Package
Title: A Time Input Widget for Shiny
Version: 0.1.0
Authors@R: person("Gerhard", "Burger", email = "burger.ga@gmail.com", role = c("aut", "cre"))
Description: Provides a time input widget for Shiny. This widget allows intuitive time input in the '[hh]:[mm]:[ss]' (24H) format by using a separate numeric input for each part of the time. The interface with R uses 'DateTimeClasses' objects. See the project page for more information and examples.
License: GPL-3 | file LICENSE
LazyData: TRUE
Imports: htmltools, shiny
URL: https://github.com/burgerga/shinyTime
BugReports: https://github.com/burgerga/shinyTime/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-18 13:46:10 UTC; gerhard
Author: Gerhard Burger [aut, cre]
Maintainer: Gerhard Burger <burger.ga@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-18 16:05:11

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New package funData with initial version 1.0
Package: funData
Type: Package
Title: An S4 Class for Functional Data
Version: 1.0
Date: 2016-07-18
Authors@R: person("Clara", "Happ", email = "clara.happ@stat.uni-muenchen.de", role = c("aut", "cre"))
Author: Clara Happ [aut, cre]
Maintainer: Clara Happ <clara.happ@stat.uni-muenchen.de>
Description: S4 classes for univariate and multivariate functional data with utility functions.
License: GPL-2
Depends: methods
Imports: abind, fields, foreach, graphics, grDevices, stats
Suggests: zoo, testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-18 09:03:34 UTC; happ
Repository: CRAN
Date/Publication: 2016-07-18 13:59:36

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Sun, 17 Jul 2016

New package SinIW with initial version 0.1
Package: SinIW
Type: Package
Title: The SinIW Distribution
Version: 0.1
Date: 2016-07-14
Author: Luciano Souza <lcnsza@gmail.com>, Lucas Gallindo <lgallindo@gmail.com>, Luciano Serafim de Souza <lucianoserafimdesouza@gmail.com>
Maintainer: Lucas Gallindo <lgallindo@gmail.com>
Description: Density, distribution function, quantile function, random generation and survival function for the Sine Inverse Weibull Distribution as defined by SOUZA, L. New Trigonometric Class of Probabilistic Distributions. 219 p. Thesis (Doctorate in Biometry and Applied Statistics) - Department of Statistics and Information, Federal Rural University of Pernambuco, Recife, Pernambuco, 2015 (available at <http://www.openthesis.org/documents/New-trigonometric-classes-probabilistic-distributions-602633.html>) and BRITO, C. C. R. Method Distributions generator and Probability Distributions Classes. 241 p. Thesis (Doctorate in Biometry and Applied Statistics) - Department of Statistics and Information, Federal Rural University of Pernambuco, Recife, Pernambuco, 2014 (available upon request).
Depends: R (>= 3.0.1)
Imports: pracma, fdrtool
License: MIT + file LICENSE
LazyData: TRUE
URL: https://github.com/TrigonometricDistribution
BugReports: https://github.com/TrigonometricDistribution/SinIW/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-17 17:16:23 UTC; Robson
Repository: CRAN
Date/Publication: 2016-07-17 22:12:28

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New package SecKW with initial version 0.1
Package: SecKW
Type: Package
Title: The SecKW Distribution
Version: 0.1
Date: 2016-07-14
Author: Luciano Souza <lcnsza@gmail.com>, Lucas Gallindo <lgallindo@gmail.com>, Luciano Serafim de Souza <lucianoserafimdesouza@gmail.com>
Maintainer: Lucas Gallindo <lgallindo@gmail.com>
Description: Density, distribution function, quantile function, random generation and survival function for the Secant Kumaraswamy Weibull Distribution as defined by SOUZA, L. New Trigonometric Class of Probabilistic Distributions. 219 p. Thesis (Doctorate in Biometry and Applied Statistics) - Department of Statistics and Information, Federal Rural University of Pernambuco, Recife, Pernambuco, 2015 (available at <http://www.openthesis.org/documents/New-trigonometric-classes-probabilistic-distributions-602633.html>) and BRITO, C. C. R. Method Distributions generator and Probability Distributions Classes. 241 p. Thesis (Doctorate in Biometry and Applied Statistics) - Department of Statistics and Information, Federal Rural University of Pernambuco, Recife, Pernambuco, 2014 (available upon request).
Depends: R (>= 3.0.1)
Imports: pracma, fdrtool
License: MIT + file LICENSE
LazyData: TRUE
URL: https://github.com/TrigonometricDistribution
BugReports: https://github.com/TrigonometricDistribution/SecKW/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-17 17:24:27 UTC; Robson
Repository: CRAN
Date/Publication: 2016-07-17 22:12:30

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New package CosW with initial version 0.1
Package: CosW
Type: Package
Title: The CosW Distribution
Version: 0.1
Date: 2016-07-14
Author: Luciano Souza <lcnsza@gmail.com>, Lucas Gallindo <lgallindo@gmail.com>, Luciano Serafim de Souza <lucianoserafimdesouza@gmail.com>
Maintainer: Lucas Gallindo <lgallindo@gmail.com>
Description: Density, distribution function, quantile function, random generation and survival function for the Cosine Weibull Distribution as defined by SOUZA, L. New Trigonometric Class of Probabilistic Distributions. 219 p. Thesis (Doctorate in Biometry and Applied Statistics) - Department of Statistics and Information, Federal Rural University of Pernambuco, Recife, Pernambuco, 2015 (available at <http://www.openthesis.org/documents/New-trigonometric-classes-probabilistic-distributions-602633.html>) and BRITO, C. C. R. Method Distributions generator and Probability Distributions Classes. 241 p. Thesis (Doctorate in Biometry and Applied Statistics) - Department of Statistics and Information, Federal Rural University of Pernambuco, Recife, Pernambuco, 2014 (available upon request).
Depends: R (>= 3.0.1)
Imports: pracma, fdrtool
License: MIT + file LICENSE
LazyData: TRUE
URL: https://github.com/TrigonometricDistribution
BugReports: https://github.com/TrigonometricDistribution/CosW/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-17 17:21:36 UTC; Robson
Repository: CRAN
Date/Publication: 2016-07-17 22:12:26

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Sat, 16 Jul 2016

New package LaplacesDemon with initial version 16.0.1
Package: LaplacesDemon
Version: 16.0.1
Date: 2016-07-04
Title: Complete Environment for Bayesian Inference
Authors@R: c(person("Byron", "Hall", role = "aut"), person("Martina", "Hall", role = "aut"), person(family="Statisticat, LLC", role = "aut"), person(given="Eric", family="Brown", role = "ctb"), person(given="Richard", family="Hermanson", role = "ctb"), person(given="Emmanuel", family="Charpentier", role = "ctb"), person(given="Henrik", family="Singmann", email="singmann+LaplacesDemon@gmail.com", role="cre"))
Depends: R (>= 3.0.0)
Imports: parallel, grDevices, graphics, stats, utils
Suggests: KernSmooth
ByteCompile: TRUE
Description: Provides a complete environment for Bayesian inference using a variety of different samplers (see ?LaplacesDemon for an overview). The README describes the history of the package development process.
License: MIT + file LICENSE
URL: https://github.com/LaplacesDemonR/LaplacesDemon
BugReports: https://github.com/LaplacesDemonR/LaplacesDemon/issues
NeedsCompilation: no
Packaged: 2016-07-16 19:24:34 UTC; henrik
Author: Byron Hall [aut], Martina Hall [aut], Statisticat, LLC [aut], Eric Brown [ctb], Richard Hermanson [ctb], Emmanuel Charpentier [ctb], Henrik Singmann [cre]
Maintainer: Henrik Singmann <singmann+LaplacesDemon@gmail.com>
X-CRAN-Comment: The package has been archived on maintainer request on 2013-07-16.
Repository: CRAN
Date/Publication: 2016-07-17 02:10:04

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Fri, 15 Jul 2016

New package sbfc with initial version 1.0
Package: sbfc
Type: Package
Title: Selective Bayesian Forest Classifier
Version: 1.0
Date: 2016-07-14
Author: Viktoriya Krakovna
Maintainer: Viktoriya Krakovna <vkrakovna@gmail.com>
URL: http://github.com/vkrakovna/sbfc
BugReports: http://github.com/vkrakovna/sbfc/issues
Description: An MCMC algorithm for simultaneous feature selection and classification, and visualization of the selected features and feature interactions. An implementation of SBFC by Krakovna, Du and Liu (2015), <http://arxiv.org/abs/1506.02371>.
License: GPL (>= 2)
Depends: R (>= 2.10)
Imports: Rcpp (>= 0.12.2), DiagrammeR, Matrix, discretization
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 5.0.1
LazyData: true
NeedsCompilation: yes
Packaged: 2016-07-15 18:33:14 UTC; Vika
Repository: CRAN
Date/Publication: 2016-07-16 00:01:12

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New package mason with initial version 0.2.4
Package: mason
Type: Package
Title: Build Data Structures for Common Statistical Analysis
Version: 0.2.4
Authors@R: person("Luke", "Johnston", email = "lwjohnst@gmail.com", role = c("aut", "cre"))
Description: Use a consistent syntax to create data structures of common statistical techniques that can be continued in a pipe chain. Design the analysis, add settings and variables, construct the results, and polish the final structure. Rinse and repeat for any number of statistical techniques.
License: MIT + file LICENSE
LazyData: TRUE
Depends: R (>= 3.1.0)
Imports: dplyr, tidyr, broom, assertive, magrittr, stats, utils, lazyeval, MASS
RoxygenNote: 5.0.1
Suggests: knitr, geepack, rmarkdown, testthat
VignetteBuilder: knitr
BugReports: https://github.com/lwjohnst86/mason/issues
URL: https://github.com/lwjohnst86/mason
NeedsCompilation: no
Packaged: 2016-07-15 21:40:30 UTC; luke
Author: Luke Johnston [aut, cre]
Maintainer: Luke Johnston <lwjohnst@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-15 23:46:18

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New package EconDemand with initial version 1.0
Package: EconDemand
Title: General Analysis of Various Economics Demand Systems
Version: 1.0
Authors@R: person("Tianhao", "Wu", email = "tianhao.wu@yale.edu", role = c("aut", "cre"))
Imports: stats, graphics
Description: Tools for general properties including price, quantity, elasticity, convexity, marginal revenue and manifold of various economics demand systems including Linear, Translog, CES, LES and CREMR.
Depends: R (>= 3.2.2)
License: GNU General Public License version 2
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-15 18:13:29 UTC; tianhaowu
Author: Tianhao Wu [aut, cre]
Maintainer: Tianhao Wu <tianhao.wu@yale.edu>
Repository: CRAN
Date/Publication: 2016-07-16 00:01:13

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New package funrar with initial version 1.0.0
Package: funrar
Title: Functional Rarity Indices Computation
Version: 1.0.0
Authors@R: c( person("Matthias", "Grenié", email = "matthias.grenie@gmail.com", role = c("aut", "cre")), person("Pierre", "Denelle", email = "pierre.denelle@cefe.cnrs.fr", role = "aut"), person("Caroline", "Tucker", email = "carolinemtucker@gmail.com", role = "aut") )
Description: Computes functional rarity indices as proposed by Violle et al (in revision). Various indices can be computed using both regional and local information. Functional Rarity combines both the functional aspect of rarity as well as the extent aspect of rarity.
Depends: R (>= 3.2.2)
License: GPL (>= 2)
LazyData: true
Imports: cluster, dplyr (>= 0.4.3), methods, stats
URL: https://github.com/Rekyt/funrar
BugReports: https://github.com/Rekyt/funrar/issues
RoxygenNote: 5.0.1
Suggests: ade4, ggplot2, knitr, Matrix, microbenchmark, reshape2, rmarkdown, StatMatch, testthat
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2016-07-15 14:44:09 UTC; grenie
Author: Matthias Grenié [aut, cre], Pierre Denelle [aut], Caroline Tucker [aut]
Maintainer: Matthias Grenié <matthias.grenie@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-15 17:34:08

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New package cobalt with initial version 1.0.0
Package: cobalt
Title: Covariate Balance Tables and Plots
Version: 1.0.0
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah@unc.edu>
Description: Generate balance tables and plots for covariates of groups preprocessed through matching, weighting or subclassification, for example, using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching', and 'CBPS' for assessing balance on the output of their preprocessing functions. Users can also specify their data not generated through the above packages.
Depends: R (>= 3.2.0)
Imports: ggplot2
Suggests: MatchIt, twang, Matching, CBPS
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Date: 2016-07-14
NeedsCompilation: no
Packaged: 2016-07-15 14:36:23 UTC; NoahGreifer
Repository: CRAN
Date/Publication: 2016-07-15 17:34:06

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New package pMineR with initial version 0.27
Package: pMineR
Type: Package
Title: Processes Mining in Medicine
Version: 0.27
Date: 2016-07-14
Authors@R: c(person("Roberto", "Gatta", role = c("aut", "cre"), email = "roberto.gatta.bs@gmail.com"), person("Jacopo", "Lenkowicz", role = "aut"), person("Mauro", "Vallati", role = "aut"), person("Alessandro", "Stefanini", role = "aut"), person("Nicola", "Dinapoli", role = "ctb"), person("Berardino", "De Bari", role = "ctb"), person("Lucia", "Sacchi", role = "ctb"))
Author: Roberto Gatta [aut, cre], Jacopo Lenkowicz [aut], Mauro Vallati [aut], Alessandro Stefanini [aut], Nicola Dinapoli [ctb], Berardino De Bari [ctb], Lucia Sacchi [ctb]
Maintainer: Roberto Gatta <roberto.gatta.bs@gmail.com>
Description: Allows to build and train simple Process Mining (PM) models (at the moment only AlphaAlgorithm and First Order Markov Model). The aim is to support PM specifically for the clinical domain from both administrative and clinical data.
License: GPL-2
Depends: DiagrammeR (>= 0.8.2), stringr (>= 1.0.0), XML (>= 3.98-1.3)
NeedsCompilation: yes
RoxygenNote: 5.0.1
Packaged: 2016-07-15 12:51:15 UTC; roberto
Repository: CRAN
Date/Publication: 2016-07-15 15:25:23

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New package RM.weights with initial version 1.0
Package: RM.weights
Type: Package
Title: Weighted Rasch Modeling and Extensions using Conditional Maximum Likelihood
Version: 1.0
Date: 2016-07-14
Author: Carlo Cafiero, Mark Nord, Sara Viviani
Maintainer: Sara Viviani <sara.viviani@fao.org>
Description: Rasch model and extensions for survey data, using Conditional Maximum likelihood (CML).
License: GPL (>= 3.0.0)
Depends: R (>= 3.0.0), psychotools, Hmisc
Packaged: 2016-07-15 08:30:04 UTC; viviani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-07-15 14:07:10

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New package sophisthse with initial version 0.7.0
Package: sophisthse
Type: Package
Title: Load Russian Economic Indicators from the Archive of Economic and Social Data
Version: 0.7.0
Date: 2016-06-27
Author: Boris Demeshev
Maintainer: Boris Demeshev <boris.demeshev@gmail.com>
Depends: R (>= 2.10)
Imports: XML, RCurl, zoo, dplyr (>= 0.2), stringr
Description: Load Russian economic indicators from the Archive of Economic and Social Data <http://sophist.hse.ru/>.
License: GPL-3
LazyData: true
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown, forecast (>= 7.0)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-14 23:14:14 UTC; boris
Repository: CRAN
Date/Publication: 2016-07-15 10:31:40

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New package modEvA with initial version 1.3.2
Package: modEvA
Type: Package
Title: Model Evaluation and Analysis
Version: 1.3.2
Date: 2016-07-12
Author: Barbosa A.M., Brown J.A., Jimenez-Valverde A., Real R.
Maintainer: A. Marcia Barbosa <barbosa@uevora.pt>
Imports: graphics, stats
Description: Analyses species distribution models and evaluates their performance. It includes functions for performing variation partitioning, calculating several measures of model discrimination and calibration, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots.
LazyLoad: yes
LazyData: yes
License: GPL-3
URL: http://modeva.r-forge.r-project.org/
Repository: CRAN
Repository/R-Forge/Project: modeva
Repository/R-Forge/Revision: 106
Repository/R-Forge/DateTimeStamp: 2016-07-14 16:37:50
Date/Publication: 2016-07-15 10:38:46
NeedsCompilation: no
Packaged: 2016-07-14 16:45:21 UTC; rforge
Depends: R (>= 2.10)

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Thu, 14 Jul 2016

New package RStripe with initial version 0.1
Package: RStripe
Title: A Convenience Interface for the Stripe Payment API
Version: 0.1
Author: Evan Farrell <evandev@gastrograph.com>
Maintainer: Evan Farrell <evandev@gastrograph.com>
Description: A convenience interface for communicating with the Stripe payment processor to accept payments online. See <https://stripe.com> for more information.
Depends: R (>= 3.1.1)
Imports: jsonlite, RCurl, httr
License: MIT + file LICENSE
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-14 21:42:22 UTC; evan
Repository: CRAN
Date/Publication: 2016-07-15 00:28:26

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New package lmeresampler with initial version 0.1.0
Package: lmeresampler
Title: Bootstrap Methods for Nested Linear Mixed-Effects Models
Version: 0.1.0
Authors@R: c(person("Adam", "Loy", email = "loyad01@gmail.com", role = c("aut", "cre")), person("Spenser", "steele", role = "aut"))
Description: Bootstrap routines for nested linear mixed effects models fit using either 'lme4' or 'nlme'. The provided 'bootstrap()' function implements the parametric, semi-parametric (i.e., CGR), residual, cases, and random effect block (REB) bootstrap procedures.
Depends: R (>= 3.1.2)
Imports: boot, plyr, dplyr, Matrix, nlmeU, RLRsim
Suggests: lme4 (>= 1.1-7), nlme, testthat, mlmRev
License: GPL-3
LazyData: true
URL: https://github.com/aloy/lmeresampler
BugReports: https://github.com/aloy/lmeresampler/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-14 20:29:26 UTC; loya
Author: Adam Loy [aut, cre], Spenser steele [aut]
Maintainer: Adam Loy <loyad01@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-15 00:31:07

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New package Peacock.test with initial version 1.0
Package: Peacock.test
Type: Package
Title: Two and Three Dimensional Kolmogorov-Smirnov Two-Sample Tests
Version: 1.0
Date: 2016-07-13
Author: Yuanhui Xiao
Maintainer: Yuanhui Xiao <xiao_yuanhui@hotmail.com>
Description: The original definition of the two and three dimensional Kolmogorov-Smirnov two-sample test statistics given by Peacock (1983) is implemented. Two R-functions: peacock2 and peacock3, are provided to compute the test statistics in two and three dimensional spaces, respectively. Note the Peacock test is different from the Fasano and Franceschini test (1987). The latter is a variant of the Peacock test.
License: GPL-2
Packaged: 2016-07-14 16:59:45 UTC; Y Xiao
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-07-14 20:33:50

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New package milr with initial version 0.1.0
Package: milr
Type: Package
Title: Multiple-Instance Logistic Regression with LASSO Penalty
Version: 0.1.0
Date: 2016-07-14
Description: The multiple instance data set consists of many independent subjects (called bags) and each subject is composed of several components (called instances). The outcomes of such data set are binary or multinomial, and, we can only observe the subject-level outcomes. For example, in manufactory processes, a subject is labeled as "defective" if at least one of its own components is defective, and otherwise, is labeled as "non-defective". The milr package focuses on the predictive model for the multiple instance data set with binary outcomes and performs the maximum likelihood estimation with the Expectation-Maximization algorithm under the framework of logistic regression. Moreover, the LASSO penalty is attached to the likelihood function for simultaneous parameter estimation and variable selection.
Authors@R: c(person("Ping-Yang", "Chen", , "pychen.ping@gmail.com", c("aut", "cre")), person("ChingChuan", "Chen", , "celestial0230@stat.sinica.edu.tw", "aut"), person("Chun-Hao", "Yang", , "chunhaoyang@ufl.edu", "aut"), person("Sheng-Mao", "Chang", , "smchang@mail.ncku.edu.tw", "aut"))
Author: Ping-Yang Chen [aut, cre], ChingChuan Chen [aut], Chun-Hao Yang [aut], Sheng-Mao Chang [aut]
URL: https://github.com/PingYangChen/milr
BugReports: https://github.com/PingYangChen/milr/issues
Maintainer: Ping-Yang Chen <pychen.ping@gmail.com>
Depends: R (>= 3.2.3)
Imports: assertthat, pipeR (>= 0.5), numDeriv, purrr (>= 0.2.0), Rcpp (>= 0.12.0), utils
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat
LazyData: yes
License: MIT + file LICENSE
Collate: 'RcppExports.R' 'milr-package.R' 'DGP.R' 'softmax.R' 'milr.R'
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-07-14 15:46:29 UTC; stat
Repository: CRAN
Date/Publication: 2016-07-14 20:15:18

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New package imfr with initial version 0.1.0
Package: imfr
Type: Package
Title: Download Data from the International Monetary Fund's Data API
Version: 0.1.0
Description: Explore and download data from the International Monetary Fund's data API <http://data.imf.org/>.
Date: 2016-07-14
Authors@R: c( person("Christopher", "Gandrud", email = "christopher.gandrud@gmail.com", role = c("aut", "cre")) )
BugReports: https://github.com/christophergandrud/imfr/issues
License: GPL (>= 3)
Imports: dplyr, httr (>= 1.2.0), jsonlite
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-14 17:54:52 UTC; christophergandrud
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-14 20:16:44

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New package matrixLaplacian with initial version 1.0
Package: matrixLaplacian
Title: Normalized Laplacian Matrix and Laplacian Map
Version: 1.0
Authors@R: person("Tianhao", "Wu", email = "tianhao.wu@yale.edu", role = c("aut", "cre"))
Imports: scatterplot3d, graphics
Description: Constructs the normalized Laplacian matrix of a square matrix, returns the eigenvectors (singular vectors) and visualization of normalized Laplacian map.
Depends: R (>= 3.2.2)
License: GNU General Public License version 2
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-14 13:44:09 UTC; tianhaowu
Author: Tianhao Wu [aut, cre]
Maintainer: Tianhao Wu <tianhao.wu@yale.edu>
Repository: CRAN
Date/Publication: 2016-07-14 15:57:37

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New package rDNAse with initial version 1.1-1
Package: rDNAse
Type: Package
Version: 1.1-1
Date: 2016-6-24
Title: Generating Various Numerical Representation Schemes of DNA Sequences
Description: Comprehensive toolkit for generating various numerical representation schemes of DNA sequence. The descriptors and similarity scores included are extensively used in bioinformatics and chemogenomics.
Author: Min-feng Zhu <wind2zhu@163.com>, Jie Dong <biomed@csu.edu.cn>, Dong-sheng Cao <oriental-cds@163.com>
Maintainer: Min-feng Zhu <wind2zhu@163.com>
License: GPL (>= 2)
URL: https://github.com/wind22zhu/rDNAse
BugReports: https://github.com/wind22zhu/rDNAse/issues
LazyData: yes
Suggests: Biostrings, GOSemSim, foreach, doParallel, RCurl, org.Hs.eg.db
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-14 00:59:48 UTC; root
Repository: CRAN
Date/Publication: 2016-07-14 07:18:52

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New package givitiR with initial version 1.2
Package: givitiR
Type: Package
Title: The GiViTI Calibration Test and Belt
Version: 1.2
Date: 2016-06-28
Authors@R: c(person("Giovanni", "Nattino", email = "giovanni.nattino@marionegri.it", role = c("cre","aut")), person("Stefano", "Finazzi", role = "aut"), person("Guido", "Bertolini", role = "aut"), person("Carlotta", "Rossi", role = "aut"), person("Greta", "Carrara", role = "aut"))
Description: Functions to assess the calibration of logistic regression models with the GiViTI (Gruppo Italiano per la Valutazione degli interventi in Terapia Intensiva, Italian Group for the Evaluation of the Interventions in Intensive Care Units - see <http://www.giviti.marionegri.it/>) approach. The approach consists in a graphical tool, namely the GiViTI calibration belt, and in the associated statistical test. These tools can be used both to evaluate the internal calibration (i.e. the goodness of fit) and to assess the validity of an externally developed model.
License: GPL-3
LazyData: TRUE
Imports: alabama, rootSolve, grDevices, graphics, stats
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-13 19:30:28 UTC; Giovanni
Author: Giovanni Nattino [cre, aut], Stefano Finazzi [aut], Guido Bertolini [aut], Carlotta Rossi [aut], Greta Carrara [aut]
Maintainer: Giovanni Nattino <giovanni.nattino@marionegri.it>
Repository: CRAN
Date/Publication: 2016-07-14 07:21:13

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Wed, 13 Jul 2016

New package TCGAretriever with initial version 1.1
Package: TCGAretriever
Type: Package
Title: Retrieve Genomic and Clinical Data from TCGA
Version: 1.1
Date: 2016-07-11
Author: Damiano Fantini
Maintainer: Damiano Fantini <damiano.fantini@gmail.com>
Depends: R (>= 3.0.0)
Imports: httr, graphics
Suggests: XML, stats, Hmisc
Description: The Cancer Genome Atlas (TCGA) is a program aimed at improving our understanding of Cancer Biology. Several TCGA Datasets are available online. 'TCGAretriever' helps accessing and downloading TCGA data via the 'cBioPortal' Web Interface (see <http://www.cbioportal.org/web_api.jsp> for more information). Features of 'TCGAretriever' include: 1) it is very simple to use (get all the TCGA data you need with a few lines of code); 2) performance (smooth and reliable data download via 'httr'); 3) it is tailored for downloading large volumes of data.
License: GPL-2
NeedsCompilation: no
Packaged: 2016-07-13 17:20:13 UTC; dami
Repository: CRAN
Date/Publication: 2016-07-13 19:42:25

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New package SizeEstimation with initial version 1.1.0
Package: SizeEstimation
Type: Package
Title: Estimating the Sizes of Populations at Risk of HIV Infection from Multiple Data Sources Using a Bayesian Hierarchical Model
Version: 1.1.0
Author: Le Bao, Kyongwon Kim
Maintainer: Kyongwon Kim<kbk5206@psu.edu>
Description: This function develops an algorithm for presenting a Bayesian hierarchical model for estimating the sizes of local and national drug injected populations in Bangladesh. The model incorporates multiple commonly used data sources including mapping data, surveys, interventions, capture-recapture data, estimates or guesstimates from organizations, and expert opinion.
Imports: MCMCpack, msm
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-13 16:11:04 UTC; Kyongwon
Repository: CRAN
Date/Publication: 2016-07-13 18:28:28

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New package rootWishart with initial version 0.3.0
Package: rootWishart
Title: Distribution of Largest Root for Single and Double Wishart Settings
Version: 0.3.0
Authors@R: person("Maxime", "Turgeon", email = "maxime.turgeon@mail.mcgill.ca", role = c("aut", "cre"))
Description: Functions for hypothesis testing in single and double Wishart settings, based on Roy's largest root. This test statistic is especially useful in multivariate analysis. The computations are based on results by Chiani (2014) <DOI:10.1016/j.jmva.2014.04.002> and Chiani (2016) <DOI:10.1016/j.jmva.2015.10.007>. They use the fact that the CDF is related to the Pfaffian of a matrix that can be computed in a finite number of iterations. This package takes advantage of the Boost and Eigen C++ libraries to perform multi-precision linear algebra.
Depends: R (>= 3.1.0)
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
RoxygenNote: 5.0.1
LinkingTo: Rcpp, RcppEigen, BH
Imports: Rcpp
URL: http://github.com/turgeonmaxime/rootWishart
BugReports: http://github.com/turgeonmaxime/rootWishart/issues
Packaged: 2016-07-13 13:24:05 UTC; mturgeon
Author: Maxime Turgeon [aut, cre]
Maintainer: Maxime Turgeon <maxime.turgeon@mail.mcgill.ca>
Repository: CRAN
Date/Publication: 2016-07-13 16:17:16

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New package QGglmm with initial version 0.4
Package: QGglmm
Type: Package
Title: Estimate Quantitative Genetics Parameters from Generalised Linear Mixed Models
Version: 0.4
Date: 2016-07-13
Author: Pierre de Villemereuil <bonamy@horus.ens.fr>
Maintainer: Pierre de Villemereuil <bonamy@horus.ens.fr>
BugReports: https://github.com/devillemereuil/qgglmm/issues
Description: Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observed phenotypic mean, phenotypic variance and additive genetic variance.
Depends: mvtnorm, R2Cuba
License: GPL-2
NeedsCompilation: no
Packaged: 2016-07-13 10:23:12 UTC; flyos
Repository: CRAN
Date/Publication: 2016-07-13 14:52:24

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New package SDEFSR with initial version 0.7.1.0
Package: SDEFSR
Type: Package
Title: Subgroup Discovery with Evolutionary Fuzzy Systems in R
Version: 0.7.1.0
Date: 2016-07-27
Authors@R: c(person("Angel M.", "Garcia", email = "amgv0009@red.ujaen.es", role = c("aut", "cre")), person("Pedro", "Gonzalez", email = "pglez@ujaen.es", role = c("aut", "cph")), person("Cristobal J.", "Carmona", email = "ccarmona@ujaen.es", role = c("aut", "cph")), person("Francisco", "Charte", email = "francisco@fcharte.com", role = "ctb"), person("Maria J.", "del Jesus", email = "mjjesus@ujaen.es", role = c("aut", "cph")) )
Maintainer: Angel M. Garcia <amgv0009@red.ujaen.es>
Description: Implementation of evolutionary fuzzy systems for the data mining task called "subgroup discovery". It also provide a Shiny App for make the analysis easier. The algorithms works with data sets provided in KEEL, ARFF and CSV format and also with data.frame objects.
URL: https://github.com/aklxao2/SDR
Depends: R (>= 3.0.0)
License: LGPL (>= 3) | file LICENSE
LazyData: TRUE
Imports: grDevices, methods, parallel, stats, utils
Suggests: ggplot2, knitr, shiny (>= 0.11)
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-12 16:54:11 UTC; angel
Author: Angel M. Garcia [aut, cre], Pedro Gonzalez [aut, cph], Cristobal J. Carmona [aut, cph], Francisco Charte [ctb], Maria J. del Jesus [aut, cph]
Repository: CRAN
Date/Publication: 2016-07-13 10:19:14

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New package europepmc with initial version 0.1.0
Package: europepmc
Title: R Interface to the Europe PubMed Central RESTful Web Service
Version: 0.1.0
Authors@R: c( person("Najko", "Jahn", email = "najko.jahn@gmail.com", role = c("aut", "cre", "cph")))
License: GPL-3
URL: http://github.com/ropensci/europepmc/
BugReports: http://github.com/ropensci/europepmc/issues
Description: An R Client for the Europe PubMed Central RESTful Web Service. It gives access to both metadata on life science literature and open access full texts. Europe PMC indexes all PubMed content and other literature sources including Agricola, a bibliographic database of citations to the agricultural literature, or Biological Patents. In addition to bibliographic metadata, the client allows users to fetch citations and reference lists. Links between life-science literature and other EBI databases, including ENA, PDB or ChEMBL are also accessible. No registration or API key is required. See the vignettes for usage examples.
LazyLoad: yes
LazyData: yes
VignetteBuilder: knitr
Depends: R (>= 3.00)
Imports: httr, jsonlite, plyr, xml2
RoxygenNote: 5.0.1
Suggests: testthat, knitr, rmarkdown
NeedsCompilation: no
Packaged: 2016-07-12 16:32:11 UTC; najko
Author: Najko Jahn [aut, cre, cph]
Maintainer: Najko Jahn <najko.jahn@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-13 10:19:21

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New package bookdown with initial version 0.1
Package: bookdown
Type: Package
Title: Authoring Books with R Markdown
Version: 0.1
Authors@R: c( person("Yihui", "Xie", role = c("aut", "cre"), email = "xie@yihui.name"), person("JJ", "Allaire", role = "ctb"), person(family = "RStudio Inc", role = "cph"), person("Bartek", "Szopka", role = "ctb", comment = "The jQuery Highlight plugin"), person(family = "jQuery Foundation", role = "cph", comment = "jQuery library"), person(family = "jQuery contributors", role = c("ctb", "cph"), comment = "jQuery library; authors listed in inst/resources/AUTHORS"), person(family = "MathQuill contributors", role = "ctb", comment = "The MathQuill library; authors listed in inst/resources/AUTHORS"), person(family = "FriendCode Inc", role = c("cph", "ctb"), comment = "The gitbook style, with modifications") )
Maintainer: Yihui Xie <xie@yihui.name>
Description: Output formats and utilities for authoring books with R Markdown.
License: GPL-3
Imports: htmltools (>= 0.3.5), knitr (>= 1.13), miniUI, rmarkdown (>= 0.9.6), yaml, rsconnect (>= 0.4.3)
Suggests: htmlwidgets, rstudioapi, servr (>= 0.3), shiny, testit (>= 0.5), tufte, webshot
URL: https://github.com/rstudio/bookdown
BugReports: https://github.com/rstudio/bookdown/issues
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-12 11:42:24 UTC; yihui
Author: Yihui Xie [aut, cre], JJ Allaire [ctb], RStudio Inc [cph], Bartek Szopka [ctb] (The jQuery Highlight plugin), jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/resources/AUTHORS), MathQuill contributors [ctb] (The MathQuill library; authors listed in inst/resources/AUTHORS), FriendCode Inc [cph, ctb] (The gitbook style, with modifications)
Repository: CRAN
Date/Publication: 2016-07-13 10:19:19

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Tue, 12 Jul 2016

New package SiMRiv with initial version 0.9
Package: SiMRiv
Version: 0.9
Date: 2016-07-12
Title: Individual-Based, Spatially-Explicit Simulation and Analysis of Multi-State Movements in River Networks and Heterogeneous Landscapes
Authors@R: c(person("Lorenzo", "Quaglietta", role = c("aut"), email = "lontrenzo@gmail.com") ,person("Miguel", "Porto", role = c("aut", "cre"), email = "mpbertolo@gmail.com") ,person("Erida", "Gjini", role = c("ctb"), email = "egjini@igc.gulbenkian.pt") ,person("Bob", "Harris", role = c("ctb")) )
Depends: R (>= 1.8.0), raster
Imports: methods, stats
Suggests: adehabitatLT, maptools
Description: Provides functions to generate and analyze individual-based spatially-explicit simulations of multi-state movements in heterogeneous landscapes, based on "resistance" rasters. Although originally conceived and designed to fill the gap of softwares simulating spatially-explicit trajectories of species constrained to linear, dendritic habitats (e.g., river networks), the simulation algorithm is built to be highly flexible and can be applied to any (aquatic, semi-aquatic or terrestrial) organism. Thus, the user will be able to use the package to simulate movements either in homogeneous landscapes, heterogeneous landscapes (e.g. semi-aquatic animal in a riverscape), or even in highly contrasted landscapes (e.g. fish in a river network). The algorithm and its input parameters are the same for all cases, so that results are comparable. Simulated trajectories can then be used as null models to test e.g. for species site fidelity and other movement ecology hypotheses, or to build predictive, mechanistic movement models, among other things. The package should thus be relevant to explore a broad spectrum of ecological phenomena, such as those at the interface of animal behaviour, landscape, spatial and movement ecology, disease and invasive species spread, and population dynamics. This is the first released experimental version; do test before using in production.
License: GPL (>= 2)
URL: http://www.r-project.org, https://github.com/miguel-porto/SiMRiv
BugReports: https://github.com/miguel-porto/SiMRiv
NeedsCompilation: yes
Packaged: 2016-07-12 09:27:07 UTC; miguel
Author: Lorenzo Quaglietta [aut], Miguel Porto [aut, cre], Erida Gjini [ctb], Bob Harris [ctb]
Maintainer: Miguel Porto <mpbertolo@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-12 13:36:28

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New package FFTrees with initial version 1.0.1
Package: FFTrees
Type: Package
Title: Generate, Visualise, and Compare Fast and Frugal Decision Trees (FFTs)
Version: 1.0.1
Date: 2016-07-11
Authors@R: person("Nathaniel", "Phillips", email = "Nathaniel.D.Phillips.is@gmail.com", role = c("aut", "cre"))
Maintainer: Nathaniel Phillips <Nathaniel.D.Phillips.is@gmail.com>
Description: Fast and Frugal Trees (FFTs) are very simply decision trees for classifying cases (i.e.; breast cancer patients) into one of two classes (e.g.; no cancer vs. true cancer). FFTs can be preferable to more complex algorithms (such as logistic regression) because they are easy to communicate and implement, and are robust against noisy data. This package contains several functions that allow users to input their own data, set model criteria and visualize the best tree(s) for their data.
LazyData: TRUE
Depends: R(>= 2.10)
Imports: rpart, snowfall, MASS, circlize, graphics
License: CC0
BugReports: https://github.com/ndphillips/FFTrees/issues
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-12 09:03:30 UTC; nphillips
Author: Nathaniel Phillips [aut, cre]
Repository: CRAN
Date/Publication: 2016-07-12 13:36:23

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New package simulator with initial version 0.2.0
Package: simulator
Title: An Engine for Running Simulations
Version: 0.2.0
Date: 2016-07-11
Authors@R: person("Jacob", "Bien", email = "jbien@cornell.edu", role = c("aut", "cre"))
Description: A framework for performing simulations such as those common in methodological statistics papers. The design principles of this package are described in greater depth in Bien, J. (2016) "The simulator: An Engine to Streamline Simulations," which is available at <http://faculty.bscb.cornell.edu/~bien/simulator.pdf>.
Depends: R (>= 3.2.0)
Imports: methods, graphics, grDevices, stats, utils, magrittr
Suggests: digest, ggplot2, knitr, rmarkdown, testthat, glmnet, mvtnorm
License: GPL-3
LazyData: true
VignetteBuilder: knitr
URL: http://github.com/jacobbien/simulator
BugReports: http://github.com/jacobbien/simulator/issues
Collate: 'evals-class.R' 'output-class.R' 'component-class.R' 'model-class.R' 'draws-class.R' 'reference-classes.R' 'simulation-class.R' 'add-to-simulation.R' 'aggregator-class.R' 'utils.R' 'create.R' 'draws.R' 'evaluate.R' 'metric-class.R' 'method-class.R' 'examples.R' 'extended-method-class.R' 'get-from-simulation.R' 'import_from.R' 'load.R' 'manage.R' 'method-extension-class.R' 'methods.R' 'models.R' 'parallel-draws.R' 'parallel-methods.R' 'parallel.R' 'plot_eval.R' 'plot_eval_by.R' 'plot_evals.R' 'tables.R' 'zzz.R'
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-12 05:25:30 UTC; jbien
Author: Jacob Bien [aut, cre]
Maintainer: Jacob Bien <jbien@cornell.edu>
Repository: CRAN
Date/Publication: 2016-07-12 10:55:18

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New package nzelect with initial version 0.2.0
Package: nzelect
Title: New Zealand Election Results
Version: 0.2.0
Authors@R: person("Peter", "Ellis", email = "peter.ellis2013nz@gmail.com", role = c("aut", "cre"))
Description: Convenient access to New Zealand election results by voting place. Voting places have been matched to Regional Council, Territorial Authority, and Area Unit, to facilitate matching with additional data.
Depends: R (>= 3.1.2)
License: GPL-3
LazyData: true
Suggests: testthat, dplyr, tidyr, knitr, rmarkdown, ggplot2, scales, ggthemes, GGally
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-12 02:06:10 UTC; Peter
Author: Peter Ellis [aut, cre]
Maintainer: Peter Ellis <peter.ellis2013nz@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-12 07:49:45

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Mon, 11 Jul 2016

New package MGL with initial version 1.1
Package: MGL
Type: Package
Title: Module Graphical Lasso
Version: 1.1
Date: 2014-11-01
Author: Safiye Celik
Maintainer: Safiye Celik <safiye@cs.washington.edu>
Description: An aggressive dimensionality reduction and network estimation technique for a high-dimensional Gaussian graphical model (GGM). Please refer to: Efficient Dimensionality Reduction for High-Dimensional Network Estimation, Safiye Celik, Benjamin A. Logsdon, Su-In Lee, Proceedings of The 31st International Conference on Machine Learning, 2014, p. 1953--1961.
License: GPL (>= 2)
URL: https://sites.google.com/a/cs.washington.edu/mgl/
Packaged: 2014-11-05 08:31:11 UTC; Administrator
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-05 13:33:01

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New package Homeric with initial version 0.1-3
Package: Homeric
Type: Package
Title: Doughnut Plots
Version: 0.1-3
Date: 2016-07-11
Author: Lawrence Hudson
Maintainer: Lawrence Hudson <quicklizard@googlemail.com>
Description: A simple implementation of doughnut plots - pie charts with a blank center. The package is named after Homer Simpson - arguably the best-known lover of doughnuts.
License: GPL-2
NeedsCompilation: no
Packaged: 2016-07-11 08:34:01 UTC; lawrence
Repository: CRAN
Date/Publication: 2016-07-11 11:36:56

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New package triebeard with initial version 0.2.0
Package: triebeard
Type: Package
Title: 'Radix' Trees in 'Rcpp'
Version: 0.2.0
Author: Oliver Keyes [aut, cre], Drew Schmidt [aut], Yuuki Takano [cph]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Description: 'Radix trees', or 'tries', are key-value data structures optimised for efficient lookups, similar in purpose to hash tables. 'triebeard' provides an implementation of 'radix trees' for use in R programming and in developing packages with 'Rcpp'.
License: MIT + file LICENSE
LazyData: TRUE
LinkingTo: Rcpp
Imports: Rcpp
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
URL: https://github.com/Ironholds/triebeard/
BugReports: https://github.com/Ironholds/triebeard/issues
Date: 2016-07-07
NeedsCompilation: yes
Packaged: 2016-07-10 17:39:08 UTC; ironholds
Repository: CRAN
Date/Publication: 2016-07-11 08:45:05

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New package nbc4va with initial version 1.0
Package: nbc4va
Type: Package
Title: Bayes Classifier for Verbal Autopsy Data
Version: 1.0
Date: 2016-07-10
Author: Richard Wen <rwenite@gmail.com>
Maintainer: Richard Wen <rwenite@gmail.com>
Description: An implementation of the Naive Bayes Classifier (NBC) algorithm used for Verbal Autopsy (VA) built on code from Miasnikof et al (2015) <DOI:10.1186/s12916-015-0521-2>.
Depends: R (>= 3.0.0)
Imports: graphics, methods, utils
Suggests: shiny, testthat
Enhances: openVA
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
Collate: 'nbc4va.R' 'nbc4va_data.R' 'nbc4va_validation.R' 'nbc4va_internal.R' 'nbc4va_main.R' 'nbc4va_extra.R' 'nbc4va_help.R' 'nbc4va_utility.R' 'nbc4va_wrapper.R'
NeedsCompilation: no
Packaged: 2016-07-11 02:40:35 UTC; Rich
Repository: CRAN
Date/Publication: 2016-07-11 08:44:53

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New package MEGENA with initial version 1.3.4-1
Package: MEGENA
Type: Package
Title: Multiscale Clustering of Geometrical Network
Version: 1.3.4-1
Date: 2016-07-09
Author: Won-Min Song, Bin Zhang
Maintainer: Won-Min Song <wonmin1984@gmail.com>
Description: Co-Expression Network Analysis by adopting network embedding technique.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.3),Matrix (>= 1.1-5),ggplot2 (>= 1.0.0),reshape (>= 0.8.5),fpc (>= 2.1-9),cluster (>= 1.15.3)
Depends: R (>= 3.0.1),doParallel (>= 1.0.8),foreach (>= 1.4.2),igraph (>= 0.7.1)
LinkingTo: Rcpp,BH
Packaged: 2016-07-10 23:20:53 UTC; songw01
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-07-11 08:44:46

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New package ANLP with initial version 1.3
Package: ANLP
Type: Package
Title: Build Text Prediction Model
Version: 1.3
Author: Achal Shah
Maintainer: Achal Shah <achalshah20@gmail.com>
Description: Library to sample and clean text data, build N-gram model, Backoff algorithm etc.
License: GPL-3
LazyData: True
RoxygenNote: 5.0.1
Depends: tm,qdap,RWeka,dplyr, R (>= 2.10)
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-10 21:37:39 UTC; Mr.Lazy
Repository: CRAN
Date/Publication: 2016-07-11 08:44:37

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Sun, 10 Jul 2016

New package Rfast with initial version 1.0
Package: Rfast
Type: Package
Title: Fast R Functions
Version: 1.0
Date: 2016-07-09
Author: Michail Tsagris, Manos Papadakis and Ioannis Tsamardinos
Maintainer: Manos Papadakis <papadakm95@gmail.com>
Depends: R (>= 3.2.2), Rcpp (>= 0.12.3)
LinkingTo: Rcpp (>= 0.12.3), RcppArmadillo
Description: A collection of fast (utility) functions for data analysis. Fast covariance matrix calculation, Mahalanobis distance and column-wise variances are some of the functions.
License: GPL-2
LazyData: TRUE
NeedsCompilation: yes
Packaged: 2016-07-09 18:17:01 UTC; MANOS
Repository: CRAN
Date/Publication: 2016-07-10 11:55:46

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New package burnr with initial version 0.1.0
Package: burnr
Title: Advanced Fire History Analysis in R
Version: 0.1.0
Authors@R: c( person("Steven", "Malevich", email = "malevich@email.arizona.edu", role = c("aut", "cre")), person("Christopher", "Guiterm1an", role = c("ctb")), person("Ellis", "Margolis", role = c("ctb")))
Description: Basic tools to analyze forest fire history data (e.g. FHX2) in R.
Depends: R (>= 3.2)
License: GPL (>= 3)
LazyData: true
Suggests: testthat, knitr, rmarkdown
Imports: ggplot2, reshape2, plyr
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-09 15:33:55 UTC; sbm
Author: Steven Malevich [aut, cre], Christopher Guiterm1an [ctb], Ellis Margolis [ctb]
Maintainer: Steven Malevich <malevich@email.arizona.edu>
Repository: CRAN
Date/Publication: 2016-07-10 11:55:49

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New package after with initial version 1.0.0
Package: after
Title: Run Code in the Background
Version: 1.0.0
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Description: Run an R function in the background, possibly after a delay. The current version uses the Tcl event loop and was ported from the 'tcltk2' package.
License: LGPL-3
LazyData: true
URL: https://github.com/gaborcsardi/after
BugReports: https://github.com/gaborcsardi/after/issues
RoxygenNote: 5.0.1
Imports: tcltk
Suggests: covr, testthat
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2016-07-09 16:03:44 UTC; gaborcsardi
Repository: CRAN
Date/Publication: 2016-07-10 11:55:48

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Sat, 09 Jul 2016

New package KernelKnn with initial version 1.0
Package: KernelKnn
Type: Package
Title: Kernel k Nearest Neighbors
Version: 1.0
Date: 2016-07-09
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions.
License: MIT + file LICENSE
LazyData: TRUE
Depends: R(>= 2.10.0)
Imports: Rcpp (>= 0.12.5), OpenImageR
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, covr, knitr, rmarkdown, irlba
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-07-09 11:32:55 UTC; lampros
Repository: CRAN
Date/Publication: 2016-07-09 14:48:36

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Fri, 08 Jul 2016

New package esc with initial version 0.1.0
Package: esc
Type: Package
Encoding: UTF-8
Title: Effect Size Computation for Meta Analysis
Version: 0.1.0
Date: 2016-06-07
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Description: Implementation of the web-based 'Practical Meta-Analysis Effect Size Calculator' from David B. Wilson in R. Based on the input, the effect size can be returned as standardized mean difference, Hedges' g, correlation coefficient r or Fisher's transformation z, odds ratio or log odds effect size.
License: GPL-3
Depends: R (>= 3.2), stats
URL: https://github.com/sjPlot/esc
BugReports: https://github.com/sjPlot/esc/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-08 16:02:41 UTC; Standardbenutzer
Repository: CRAN
Date/Publication: 2016-07-08 18:47:25

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New package unvotes with initial version 0.1.0
Package: unvotes
Type: Package
Title: United Nations General Assembly Voting Data
Version: 0.1.0
Authors@R: person("David", "Robinson", email = "admiral.david@gmail.com", role = c("aut", "cre"))
Description: Historical voting data of the United Nations General Assembly. This includes votes for each country in each roll call, as well as descriptions and topic classifications for each vote.
License: MIT + file LICENSE
LazyData: TRUE
URL: http://github.com/dgrtwo/unvotes
VignetteBuilder: knitr
BugReports: http://github.com/dgrtwo/unvotes/issues
Depends: R (>= 2.10)
Suggests: knitr, dplyr, readxl, countrycode, tidyr, lubridate, devtools, rmarkdown, ggplot2
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-08 04:21:34 UTC; dgrtwo
Author: David Robinson [aut, cre]
Maintainer: David Robinson <admiral.david@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-08 11:51:36

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New package StratifiedBalancing with initial version 0.1.0
Package: StratifiedBalancing
Type: Package
Title: Performs Stratified Covariate Balancing for Data with Discrete and Continuous Outcome Variables
Version: 0.1.0
Author: Amr ElRafey
Maintainer: Amr ElRafey <ae2504@columbia.edu>
Description: Stratified covariate balancing through naturally occurring strata to adjust for confounding and interaction effects. Contains 2 primary functions which perform stratification and return adjusted odds along with naturally occurring strata.
License: GPL-2
LazyData: TRUE
Depends: plyr
NeedsCompilation: no
Packaged: 2016-07-07 22:32:51 UTC; HAP
Repository: CRAN
Date/Publication: 2016-07-08 11:48:05

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New package robustrank with initial version 7.15-16
Package: robustrank
LazyLoad: yes
LazyData: yes
Version: 7.15-16
Title: Robust Rank-Based Tests
Author: Youyi Fong <youyifong@gmail.com>
Maintainer: Youyi Fong <youyifong@gmail.com>
Depends: R (>= 3.0.0)
Suggests: RUnit, VGAM, copula, mvtnorm
Imports: pracma
Description: Implements several rank-based tests, including the modified Wilcoxon-Mann-Whitney two sample location test, also known as the Fligner-Policello test.
License: GPL-2
NeedsCompilation: yes
Packaged: 2016-07-07 23:13:44 UTC; Youyi
Repository: CRAN
Date/Publication: 2016-07-08 11:51:35

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New package KSD with initial version 0.1.0
Package: KSD
Type: Package
Title: Kernelized Stein Discrepancy
Version: 0.1.0
Date: 2016-06-05
Authors@R: c(person("Qiang", "Liu",role="aut",email="qliu@cs.dartmouth.edu"),person("Min Hyung", "Kang", role = c("aut","cre"), email = "Minhyung.Daniel.Kang@gmail.com"))
Description: An adaptation of Kernelized Stein Discrepancy, a discrepancy statistic for measuring differences between two probability distributions based on combination of Stein's method and reproducing kernel Hilbert space theory. It provides a method for a user to evaluate how similar two distributions are. It is based on "A Kernelized Stein Discrepancy for Goodness-of-fit Tests and Model Evaluation" by Liu, Lee, and Jordan, available at <http://arxiv.org/abs/1602.03253>.
License: MIT + file LICENSE
LazyData: TRUE
RoxygenNote: 5.0.1
Imports: pryr, graphics, stats
Suggests: datasets, ggplot2, gridExtra, mclust, mvtnorm
NeedsCompilation: no
Packaged: 2016-07-08 02:18:06 UTC; user
Author: Qiang Liu [aut], Min Hyung Kang [aut, cre]
Maintainer: Min Hyung Kang <Minhyung.Daniel.Kang@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-08 11:52:57

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New package corrr with initial version 0.1.0
Package: corrr
Type: Package
Version: 0.1.0
Title: Correlations in R
Description: A tool for exploring correlations. It makes it possible to easily perform routine tasks when exploring correlation matrices such as ignoring the diagonal, focusing on the correlations of certain variables against others, or rearranging and visualising the matrix in terms of the strength of the correlations.
Authors@R: c( person("Simon", "Jackson", email = "drsimonjackson@gmail.com", role = c("aut", "cre")) )
URL: https://github.com/drsimonj/corrr
BugReports: https://github.com/drsimonj/corrr/issues
Depends: R (>= 3.3.1), dplyr (>= 0.5.0)
LazyData: yes
License: MIT + file LICENSE
RoxygenNote: 5.0.1
Suggests: testthat (>= 1.0.2), knitr (>= 1.13), rmarkdown (>= 0.9.6)
Imports: magrittr (>= 1.5), tidyr (>= 0.5.1), ggplot2 (>= 2.1.0), seriation (>= 1.2-0), lazyeval (>= 0.2.0), purrr (>= 0.2.2), tibble (>= 1.1)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-07-07 23:02:23 UTC; Simon
Author: Simon Jackson [aut, cre]
Maintainer: Simon Jackson <drsimonjackson@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-08 11:48:07

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Thu, 07 Jul 2016

New package SOIL with initial version 1.0
Package: SOIL
Type: Package
Title: Sparsity Oriented Importance Learning
Version: 1.0
Date: 2016-07-07
Author: Chenglong Ye <yexxx323@umn.edu>, Yi Yang <yi.yang6@mcgill.ca>, Yuhong Yang <yyang@stat.umn.edu>
Maintainer: Yi Yang <yi.yang6@mcgill.ca>
Depends: stats, glmnet, ncvreg, MASS, parallel, brglm
Description: Sparsity Oriented Importance Learning (SOIL) provides an objective and informative profile of variable importances for high dimensional regression and classification models.
License: GPL-2
URL: https://github.com/emeryyi/SOIL
Packaged: 2016-07-07 20:30:37 UTC; yiyang
Date/Publication: 2016-07-07 23:52:14
NeedsCompilation: no
Repository: CRAN

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New package Rtnmin with initial version 2016-7.7
Package: Rtnmin
Type: Package
Title: Truncated Newton Function Minimization with Bounds Constraints
Version: 2016-7.7
Date: 2016-07-07
Authors@R: c( person(given = c("John", "C"), family = "Nash", role = c("aut", "cre", "cph"), email = "nashjc@uottawa.ca"), person(given = c("Stephen", "G"), family = "Nash", role = c("aut", "cph"), email = "sgn@gmu.edu") )
Maintainer: John C Nash <nashjc@uottawa.ca>
Description: Truncated Newton function minimization with bounds constraints based on the 'Matlab'/'Octave' codes of Stephen Nash.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-07-07 20:47:11 UTC; john
Author: John C Nash [aut, cre, cph], Stephen G Nash [aut, cph]
Repository: CRAN
Date/Publication: 2016-07-07 23:56:42

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New package expss with initial version 0.5.1
Package: expss
Type: Package
Title: Some Useful Functions from Spreadsheets and 'SPSS' Statistics
Version: 0.5.1
Date: 2016-07-07
Author: Gregory Demin
Maintainer: Gregory Demin <gdemin@gmail.com>
URL: https://github.com/gdemin/expss
Depends: R (>= 3.3)
Imports: foreign, utils, stats
Suggests: knitr
Description: Package implements several popular functions from Excel ('COUNTIF', 'VLOOKUP', etc.) and 'SPSS' Statistics ('RECODE', 'COUNT', etc.). Also there are functions for basic tables with value labels/variable labels support. Package aimed to help people to move data processing from Excel/'SPSS' to R.
VignetteBuilder: knitr
LazyData: yes
License: GPL (>= 2)
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-07 20:30:55 UTC; gregory
Repository: CRAN
Date/Publication: 2016-07-07 23:56:43

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New package SpectralMap with initial version 1.0
Package: SpectralMap
Title: Diffusion Map and Spectral Map
Version: 1.0
Authors@R: person("Tianhao", "Wu", email = "tianhao.wu@yale.edu", role = c("aut", "cre"))
Imports: scatterplot3d, graphics, fields
Description: Implements the diffusion map method of dimensionality reduction and spectral method of combining multiple diffusion maps, including creation of the spectra and visualization of maps.
Depends: R (>= 3.2.2)
License: GNU General Public License version 2
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-07 14:36:20 UTC; tianhaowu
Author: Tianhao Wu [aut, cre]
Maintainer: Tianhao Wu <tianhao.wu@yale.edu>
Repository: CRAN
Date/Publication: 2016-07-07 17:37:38

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New package changepoint.np with initial version 0.0.2
Package: changepoint.np
Type: Package
Title: Methods for Nonparametric Changepoint Detection
Version: 0.0.2
Date: 2016-07-06
Author: c(person("Kaylea", "Haynes", role = c("aut", "cre"), email = "k.haynes1@lancaster.ac.uk"), person("Rebecca", "Killick", role="ctr"), person("Paul", "Fearnhead", role=c("ths", "ctr")), person("Idris", "Eckley", role=c("ths")))
Maintainer: Kaylea Haynes <k.haynes1@lancaster.ac.uk>
Description: Implements the multiple changepoint algorithm PELT with a nonparametric cost function based on the empirical distribution of the data. The cpt.np() function should be your first point of call. This package is an extension to the \code{changepoint} package which uses parametric changepoint methods. For further information on the methods see the documentation for \code{changepoint}.
Depends: R(>= 3.2), changepoint
Imports: methods, zoo
License: GPL
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-07-07 13:58:55 UTC; kaylea
Repository: CRAN
Date/Publication: 2016-07-07 17:37:39

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New package QCApro with initial version 1.1-1
Package: QCApro
Version: 1.1-1
Date: 2016-07-07
Title: Professional Functionality for Performing and Evaluating Qualitative Comparative Analysis
Authors@R: c(person("Alrik", "Thiem", role = c("aut", "cre", "cph"), email = "alrik.thiem@unige.ch"), person("Michael", "Baumgartner", role = "ctb"), person("Adrian", "Dusa", role = "ctb"), person("Reto", "Spoehel", role = "ctb") )
URL: http://www.alrik-thiem.net/; https://www.researchgate.net/profile/Alrik_Thiem
Depends: R (>= 3.2.5)
Suggests: QCA3 (<= 0.0-7), QCAGUI (<= 2.3), testthat (<= 0.11.0)
Imports: lpSolve, utils
Description: The 'QCApro' package provides professional functionality for performing configurational comparative research with Qualitative Comparative Analysis (QCA), including crisp-set, multi-value, and fuzzy-set QCA. It also offers advanced tools for sensitivity diagnostics and methodological evaluations of QCA.
License: GPL-3
NeedsCompilation: yes
Packaged: 2016-07-07 13:09:18 UTC; Alrik Thiem
Author: Alrik Thiem [aut, cre, cph], Michael Baumgartner [ctb], Adrian Dusa [ctb], Reto Spoehel [ctb]
Maintainer: Alrik Thiem <alrik.thiem@unige.ch>
Repository: CRAN
Date/Publication: 2016-07-07 15:44:34

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New package OpenImageR with initial version 1.0
Package: OpenImageR
Type: Package
Title: An Image Processing Toolkit
Version: 1.0
Imports: Rcpp (>= 0.12.5), shiny, jpeg, png, tiff, utils
Date: 2016-07-06
Authors@R: c( person("Lampros", "Mouselimis", email = "mouselimislampros@gmail.com", role = c("aut", "cre")), person("Sight", "Machine", role = "cph", comment = "findHOGFeatures function of the SimpleCV computer vision platform"), person("Johannes", "Buchner", role = "cph", comment = "average_hash, dhash and phash functions of the ImageHash python library") )
Description: Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions. The histogram of oriented gradients descriptor is a modification of the 'findHOGFeatures' function of the 'SimpleCV' computer vision platform and the average_hash(), dhash() and phash() functions are based on the 'ImageHash' python library.
License: GPL-3
Copyright: See file inst/COPYRIGHT
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, knitr, rmarkdown, grid
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-07-07 09:59:53 UTC; lampros
Author: Lampros Mouselimis [aut, cre], Sight Machine [cph] (findHOGFeatures function of the SimpleCV computer vision platform), Johannes Buchner [cph] (average_hash, dhash and phash functions of the ImageHash python library)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-07 15:54:10

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New package NetOrigin with initial version 1.0-2
Package: NetOrigin
Title: Origin Estimation for Propagation Processes on Complex Networks
Description: Performs network-based source estimation. Different approaches are available: effective distance median, recursive backtracking, and centrality-based source estimation. Additionally, we provide public transportation network data as well as methods for data preparation, source estimation performance analysis and visualization.
Version: 1.0-2
Authors@R: c(person("Juliane", "Manitz", email="r@manitz.org", role=c("aut", "cre")), person("Jonas", "Harbering", email="", role=c("ctb")))
Depends: R (>= 3.2.2)
Imports: igraph, Hmisc, colorspace
License: GPL-3
LazyData: true
RoxygenNote: 5.0.1
Collate: '0_helper_net.r' 'NetOrigin.r' 'origin_helper.r' 'origin_methods.r' 'distance.r' 'data.r' 'data_handling.r' 'robustness.r'
NeedsCompilation: no
Packaged: 2016-07-06 22:29:05 UTC; jmanitz
Author: Juliane Manitz [aut, cre], Jonas Harbering [ctb]
Maintainer: Juliane Manitz <r@manitz.org>
Repository: CRAN
Date/Publication: 2016-07-07 07:39:10

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New package EXRQ with initial version 1.0
Package: EXRQ
Type: Package
Title: Extreme Regression of Quantiles
Version: 1.0
Date: 2016-07-06
Author: Huixia Judy Wang
Maintainer: Huixia Judy Wang <judywang@gwu.edu>
Description: Estimation for high conditional quantiles based on quantile regression.
Depends: quantreg, mnormt
License: GPL-3
Packaged: 2016-07-06 15:57:38 UTC; jwang1
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-07-06 23:48:41

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Wed, 06 Jul 2016

New package RSmartlyIO with initial version 0.1.0
Package: RSmartlyIO
Type: Package
Title: Loading Facebook and Instagram Advertising Data from Smartly.io
Description: Aims at loading Facebook and Instagram advertising data from Smartly.io into R. Smartly.io is an online advertising service that enables advertisers to display commercial ads on social media networks. The package offers an interface to query the Smartly.io API and loads data directly into R for further data processing and data analysis.
Version: 0.1.0
Author: Johannes Burkhardt <johannes.burkhardt@gmail.com>
Maintainer: Johannes Burkhardt <johannes.burkhardt@gmail.com>
Depends: R (>= 3.0.0)
Imports: RCurl
License: MIT + file LICENSE
URL: https://github.com/rstats-lab/RSmartlyIO, https://app.smartly.io
BugReports: https://github.com/rstats-lab/RSmartlyIO/issues
Date: 2016-05-25
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-06 14:02:03 UTC; jburkhardt
Repository: CRAN
Date/Publication: 2016-07-06 17:35:03

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New package forestinventory with initial version 0.1.0
Package: forestinventory
Type: Package
Title: Design-Based Global and Small-Area Estimations for Multiphase Forest Inventories
Version: 0.1.0
Date: 2016-07-06
Authors@R: c(person(given = c("Andreas"), family = "Hill", email = "forestinventory@gmx.ch", role = c("aut","cre")), person(given = c("Alexander"), family = "Massey", email = "forestinventory@gmx.ch", role = c("aut")), person(given = c("Daniel"), family = "Mandallaz", role = c("ctb")) )
Maintainer: Andreas Hill <forestinventory@gmx.ch>
Description: Extensive global and small-area estimation procedures for multiphase forest inventories under the design-based Monte-Carlo approach are provided. The implementation includes estimators for simple and cluster sampling published by Daniel Mandallaz in 2007 (<DOI:10.1201/9781584889779>), 2013 (<DOI:10.1139/cjfr-2012-0381>, <DOI:10.1139/cjfr-2013-0181>, <DOI:10.1139/cjfr-2013-0449>, <DOI:10.3929/ethz-a-009990020>) and 2016 (<DOI:10.3929/ethz-a-010579388>). It provides point estimates, their external- and design-based variances as well as confidence intervals. The procedures have also been optimized for the use of remote sensing data as auxiliary information.
License: GPL (>= 2)
LazyData: TRUE
Imports: plyr (>= 1.8.3), stats, utils
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-07-06 13:01:28 UTC; hilla
Author: Andreas Hill [aut, cre], Alexander Massey [aut], Daniel Mandallaz [ctb]
Repository: CRAN
Date/Publication: 2016-07-06 16:04:39

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New package propr with initial version 1.1.0
Package: propr
Title: Calculating Proportionality Between Vectors of Compositional Data
Version: 1.1.0
URL: http://github.com/tpq/propr
BugReports: http://github.com/tpq/propr/issues
Authors@R: c( person("Thomas", "Quinn", email = "contacttomquinn@gmail.com", role = c("aut", "cre")), person("David", "Lovell", email = "david.lovell@qut.edu.au", role = "aut") )
Description: The bioinformatic evaluation of gene co-expression often begins with correlation-based analyses. However, this approach lacks statistical validity when applied to relative data, including those biological count data produced by microarray assays or high-throughput RNA-sequencing. As an alternative, Lovell et al propose a proportionality metric, phi, derived from compositional data analysis, a branch of math dealing specifically with relative data. In a subsequent publication, Erb and Nicodemus expounded these efforts by elaborating on another proportionality metric, rho. This package introduces a programmatic framework for the calculation of feature dependence using proportionality and other compositional data methods discussed in the cited publications.
License: GPL-2
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 5.0.1
Depends: R (>= 3.2.2)
Imports: methods
Suggests: compositions, dendextend, ggplot2, ggthemes, knitr, rmarkdown, testthat
NeedsCompilation: no
Packaged: 2016-07-06 00:08:59 UTC; thom
Author: Thomas Quinn [aut, cre], David Lovell [aut]
Maintainer: Thomas Quinn <contacttomquinn@gmail.com>
Repository: CRAN
Date/Publication: 2016-07-06 09:44:00

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