Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction risk of species according to the IUCN (International Union for Conservation of Nature, see <https://iucn.org/> for more information) red list criteria.
Author: Pedro Cardoso [aut] ,
Vasco V. Branco [cre, aut]
Maintainer: Vasco V. Branco <vasco.branco@helsinki.fi>
Diff between red versions 1.6.1 dated 2023-09-08 and 1.6.2 dated 2025-05-10
DESCRIPTION | 17 +++++++++-------- MD5 | 6 +++--- R/main.R | 28 +++++++++++++++++++++++++++- man/records.Rd | 2 ++ 4 files changed, 41 insertions(+), 12 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb],
Karl Dunkle Werner [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 19.0.1.1 dated 2025-04-08 and 20.0.0 dated 2025-05-10
arrow-19.0.1.1/arrow/tools/cpp/src/arrow/compute/kernels/test_util.cc |only arrow-19.0.1.1/arrow/tools/cpp/src/arrow/compute/kernels/test_util.h |only arrow-19.0.1.1/arrow/tools/cpp/src/arrow/flight/server_middleware.cc |only arrow-19.0.1.1/arrow/tools/cpp/src/arrow/flight/transport/ucx |only arrow-20.0.0/arrow/DESCRIPTION | 13 arrow-20.0.0/arrow/MD5 | 523 ++-- arrow-20.0.0/arrow/NEWS.md | 26 arrow-20.0.0/arrow/R/enums.R | 2 arrow-20.0.0/arrow/R/metadata.R | 4 arrow-20.0.0/arrow/R/parquet.R | 15 arrow-20.0.0/arrow/configure.win | 9 arrow-20.0.0/arrow/man/enums.Rd | 2 arrow-20.0.0/arrow/man/write_parquet.Rd | 4 arrow-20.0.0/arrow/src/arrow_types.h | 4 arrow-20.0.0/arrow/src/r_to_arrow.cpp | 2 arrow-20.0.0/arrow/src/safe-call-into-r-impl.cpp | 8 arrow-20.0.0/arrow/src/safe-call-into-r.h | 8 arrow-20.0.0/arrow/src/symbols.cpp | 12 arrow-20.0.0/arrow/src/type_infer.cpp | 8 arrow-20.0.0/arrow/tests/testthat/helper-arrow.R | 6 arrow-20.0.0/arrow/tests/testthat/helper-skip.R | 1 arrow-20.0.0/arrow/tests/testthat/test-Array.R | 5 arrow-20.0.0/arrow/tests/testthat/test-RecordBatch.R | 6 arrow-20.0.0/arrow/tests/testthat/test-chunked-array.R | 6 arrow-20.0.0/arrow/tests/testthat/test-dataset.R | 6 arrow-20.0.0/arrow/tests/testthat/test-dplyr-collapse.R | 15 arrow-20.0.0/arrow/tests/testthat/test-parquet.R | 9 arrow-20.0.0/arrow/tools/LICENSE.txt | 33 arrow-20.0.0/arrow/tools/checksums |only arrow-20.0.0/arrow/tools/cpp/Brewfile | 5 arrow-20.0.0/arrow/tools/cpp/CMakeLists.txt | 75 arrow-20.0.0/arrow/tools/cpp/CMakeLists.txt-e | 75 arrow-20.0.0/arrow/tools/cpp/CMakePresets.json | 334 +- arrow-20.0.0/arrow/tools/cpp/cmake_modules/DefineOptions.cmake | 7 arrow-20.0.0/arrow/tools/cpp/cmake_modules/FindThriftAlt.cmake | 43 arrow-20.0.0/arrow/tools/cpp/cmake_modules/ThirdpartyToolchain.cmake | 215 - arrow-20.0.0/arrow/tools/cpp/cmake_modules/Usevcpkg.cmake | 92 arrow-20.0.0/arrow/tools/cpp/meson.build |only arrow-20.0.0/arrow/tools/cpp/meson.options |only arrow-20.0.0/arrow/tools/cpp/src/arrow/CMakeLists.txt | 13 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/CMakeLists.txt | 32 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/accumulation_queue.h | 7 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/aggregate_benchmark.cc | 15 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/aggregate_internal.cc | 3 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/aggregate_internal.h | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/aggregate_node.h | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/arrow-acero.pc.in | 3 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/asof_join_node.cc | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/concurrent_queue_internal.h | 38 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/groupby_aggregate_node.cc | 5 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/hash_join.cc | 16 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/hash_join.h | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/hash_join_benchmark.cc | 54 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/hash_join_node.cc | 3 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/options.h | 10 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/partition_util.h | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/project_node.cc | 7 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/sorted_merge_node.cc | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/source_node.cc | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/swiss_join.cc | 443 +-- arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/swiss_join_avx2.cc | 34 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/swiss_join_internal.h | 98 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/task_util.cc | 87 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/test_util_internal.cc | 88 arrow-20.0.0/arrow/tools/cpp/src/arrow/acero/test_util_internal.h | 12 arrow-20.0.0/arrow/tools/cpp/src/arrow/array/array_base.h | 8 arrow-20.0.0/arrow/tools/cpp/src/arrow/buffer.cc | 24 arrow-20.0.0/arrow/tools/cpp/src/arrow/buffer.h | 28 arrow-20.0.0/arrow/tools/cpp/src/arrow/c/bridge_benchmark.cc | 20 arrow-20.0.0/arrow/tools/cpp/src/arrow/c/meson.build |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compare.cc | 44 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/CMakeLists.txt | 23 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/api_aggregate.cc | 50 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/api_aggregate.h | 130 + arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/api_scalar.cc | 10 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/api_scalar.h | 10 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/api_vector.cc | 54 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/api_vector.h | 125 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/exec.h | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/expression.cc | 18 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/CMakeLists.txt | 40 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/aggregate_internal.h | 11 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/aggregate_mode.cc | 7 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/aggregate_pivot.cc |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/aggregate_quantile.cc | 26 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/aggregate_var_std.cc | 378 +- arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/aggregate_var_std_internal.h | 127 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/codegen_internal.h | 16 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/hash_aggregate.cc | 1271 ---------- arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/hash_aggregate_internal.h |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/hash_aggregate_numeric.cc |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/hash_aggregate_pivot.cc |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/pivot_internal.cc |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/pivot_internal.h |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_arithmetic_benchmark.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_boolean_benchmark.cc | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_cast_benchmark.cc | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_cast_boolean.cc | 3 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_cast_nested.cc | 50 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_cast_string.cc | 52 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_compare_benchmark.cc | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_list_benchmark.cc | 66 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_random_benchmark.cc | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_round_benchmark.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_set_lookup_benchmark.cc | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_string_ascii.cc | 205 + arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_string_benchmark.cc | 8 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/scalar_temporal_benchmark.cc | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/test_util_internal.cc |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/test_util_internal.h |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/util_internal.h | 19 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_partition_benchmark.cc | 3 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_rank.cc | 492 ++- arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_selection_benchmark.cc | 6 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_sort.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_sort_benchmark.cc | 5 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_sort_internal.h | 182 - arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_statistics.cc |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_swizzle.cc |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/kernels/vector_topk_benchmark.cc | 5 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/key_map_internal.cc | 215 - arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/key_map_internal.h | 135 - arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/key_map_internal_avx2.cc | 62 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/light_array_internal.cc | 8 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/registry.cc | 5 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/registry_internal.h | 5 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/row/compare_internal.cc | 22 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/row/compare_internal_avx2.cc | 81 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/row/encode_internal.cc | 54 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/row/encode_internal.h | 10 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/row/encode_internal_avx2.cc | 15 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/row/grouper.cc | 357 +- arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/row/grouper.h | 14 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/row/row_internal.cc | 10 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/row/row_internal.h | 61 arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/row/row_util_avx2_internal.h |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/test_util_internal.cc |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/test_util_internal.h |only arrow-20.0.0/arrow/tools/cpp/src/arrow/compute/type_fwd.h | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/csv/meson.build |only arrow-20.0.0/arrow/tools/cpp/src/arrow/csv/parser.cc | 74 arrow-20.0.0/arrow/tools/cpp/src/arrow/csv/reader.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/CMakeLists.txt | 13 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/arrow-dataset.pc.in | 3 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/dataset.cc | 14 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/dataset.h | 10 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/discovery.cc | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/file_base.cc | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/file_parquet.cc | 42 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/file_parquet.h | 5 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/scanner.cc | 32 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/scanner.h | 48 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/test_util_internal.cc | 30 arrow-20.0.0/arrow/tools/cpp/src/arrow/dataset/test_util_internal.h | 10 arrow-20.0.0/arrow/tools/cpp/src/arrow/engine/CMakeLists.txt | 9 arrow-20.0.0/arrow/tools/cpp/src/arrow/engine/arrow-substrait.pc.in | 3 arrow-20.0.0/arrow/tools/cpp/src/arrow/engine/substrait/expression_internal.cc | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/engine/substrait/serde.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/arrow/engine/substrait/util.cc | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/engine/substrait/util_internal.cc | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/filesystem/gcsfs.h | 3 arrow-20.0.0/arrow/tools/cpp/src/arrow/flight/CMakeLists.txt | 32 arrow-20.0.0/arrow/tools/cpp/src/arrow/flight/arrow-flight.pc.in | 3 arrow-20.0.0/arrow/tools/cpp/src/arrow/flight/flight_benchmark.cc | 24 arrow-20.0.0/arrow/tools/cpp/src/arrow/flight/perf_server.cc | 32 arrow-20.0.0/arrow/tools/cpp/src/arrow/flight/server_auth.h | 20 arrow-20.0.0/arrow/tools/cpp/src/arrow/flight/server_middleware.h | 24 arrow-20.0.0/arrow/tools/cpp/src/arrow/flight/sql/CMakeLists.txt | 9 arrow-20.0.0/arrow/tools/cpp/src/arrow/flight/sql/arrow-flight-sql.pc.in | 3 arrow-20.0.0/arrow/tools/cpp/src/arrow/flight/sql/server_session_middleware.cc | 11 arrow-20.0.0/arrow/tools/cpp/src/arrow/flight/sql/server_session_middleware_factory.h | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/io/memory.cc | 9 arrow-20.0.0/arrow/tools/cpp/src/arrow/io/memory.h | 16 arrow-20.0.0/arrow/tools/cpp/src/arrow/io/meson.build |only arrow-20.0.0/arrow/tools/cpp/src/arrow/io/test_common.cc | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/io/test_common.h | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/io/transform.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/arrow/ipc/feather.cc | 76 arrow-20.0.0/arrow/tools/cpp/src/arrow/ipc/message.cc | 12 arrow-20.0.0/arrow/tools/cpp/src/arrow/ipc/metadata_internal.cc | 283 +- arrow-20.0.0/arrow/tools/cpp/src/arrow/ipc/metadata_internal.h | 6 arrow-20.0.0/arrow/tools/cpp/src/arrow/ipc/reader.cc | 17 arrow-20.0.0/arrow/tools/cpp/src/arrow/ipc/writer.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/arrow/memory_pool.cc | 28 arrow-20.0.0/arrow/tools/cpp/src/arrow/memory_pool.h | 10 arrow-20.0.0/arrow/tools/cpp/src/arrow/memory_pool_internal.h | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/memory_pool_jemalloc.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/arrow/meson.build |only arrow-20.0.0/arrow/tools/cpp/src/arrow/record_batch.cc | 10 arrow-20.0.0/arrow/tools/cpp/src/arrow/record_batch.h | 2 arrow-20.0.0/arrow/tools/cpp/src/arrow/scalar.cc | 11 arrow-20.0.0/arrow/tools/cpp/src/arrow/testing/CMakeLists.txt | 3 arrow-20.0.0/arrow/tools/cpp/src/arrow/testing/generator.cc | 41 arrow-20.0.0/arrow/tools/cpp/src/arrow/testing/generator.h | 44 arrow-20.0.0/arrow/tools/cpp/src/arrow/testing/math.cc | 6 arrow-20.0.0/arrow/tools/cpp/src/arrow/testing/meson.build |only arrow-20.0.0/arrow/tools/cpp/src/arrow/testing/process.cc | 32 arrow-20.0.0/arrow/tools/cpp/src/arrow/type.cc | 6 arrow-20.0.0/arrow/tools/cpp/src/arrow/type.h | 8 arrow-20.0.0/arrow/tools/cpp/src/arrow/type_traits.h | 7 arrow-20.0.0/arrow/tools/cpp/src/arrow/util/CMakeLists.txt | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/util/async_generator.h | 69 arrow-20.0.0/arrow/tools/cpp/src/arrow/util/async_generator_fwd.h | 4 arrow-20.0.0/arrow/tools/cpp/src/arrow/util/bit_util_benchmark.cc | 8 arrow-20.0.0/arrow/tools/cpp/src/arrow/util/bitmap_ops.cc | 24 arrow-20.0.0/arrow/tools/cpp/src/arrow/util/bitmap_ops.h | 4 arrow-20.0.0/arrow/tools/cpp/src/arrow/util/config.h.cmake | 1 arrow-20.0.0/arrow/tools/cpp/src/arrow/util/delimiting.cc | 8 arrow-20.0.0/arrow/tools/cpp/src/arrow/util/iterator.h | 7 arrow-20.0.0/arrow/tools/cpp/src/arrow/util/math_internal.cc |only arrow-20.0.0/arrow/tools/cpp/src/arrow/util/math_internal.h |only arrow-20.0.0/arrow/tools/cpp/src/arrow/util/meson.build |only arrow-20.0.0/arrow/tools/cpp/src/arrow/util/type_fwd.h | 12 arrow-20.0.0/arrow/tools/cpp/src/arrow/visit_type_inline.h | 4 arrow-20.0.0/arrow/tools/cpp/src/generated/File_generated.h | 10 arrow-20.0.0/arrow/tools/cpp/src/generated/Message_generated.h | 116 arrow-20.0.0/arrow/tools/cpp/src/generated/Schema_generated.h | 514 ++-- arrow-20.0.0/arrow/tools/cpp/src/generated/SparseTensor_generated.h | 134 - arrow-20.0.0/arrow/tools/cpp/src/generated/Tensor_generated.h | 62 arrow-20.0.0/arrow/tools/cpp/src/generated/feather_generated.h | 204 - arrow-20.0.0/arrow/tools/cpp/src/parquet/CMakeLists.txt | 1 arrow-20.0.0/arrow/tools/cpp/src/parquet/arrow/reader_internal.cc | 24 arrow-20.0.0/arrow/tools/cpp/src/parquet/arrow/reader_writer_benchmark.cc | 5 arrow-20.0.0/arrow/tools/cpp/src/parquet/arrow/schema.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/parquet/arrow/schema_internal.cc | 7 arrow-20.0.0/arrow/tools/cpp/src/parquet/arrow/size_stats_benchmark.cc |only arrow-20.0.0/arrow/tools/cpp/src/parquet/arrow/writer.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/parquet/arrow/writer.h | 9 arrow-20.0.0/arrow/tools/cpp/src/parquet/benchmark_util.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/parquet/benchmark_util.h | 4 arrow-20.0.0/arrow/tools/cpp/src/parquet/bloom_filter_benchmark.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/parquet/column_io_benchmark.cc | 5 arrow-20.0.0/arrow/tools/cpp/src/parquet/column_reader.cc | 95 arrow-20.0.0/arrow/tools/cpp/src/parquet/column_reader.h | 13 arrow-20.0.0/arrow/tools/cpp/src/parquet/column_reader_benchmark.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/parquet/column_writer.cc | 234 - arrow-20.0.0/arrow/tools/cpp/src/parquet/encoder.cc | 2 arrow-20.0.0/arrow/tools/cpp/src/parquet/encryption/crypto_factory.h | 4 arrow-20.0.0/arrow/tools/cpp/src/parquet/encryption/encryption.cc | 94 arrow-20.0.0/arrow/tools/cpp/src/parquet/encryption/encryption.h | 88 arrow-20.0.0/arrow/tools/cpp/src/parquet/encryption/encryption_internal.cc | 308 +- arrow-20.0.0/arrow/tools/cpp/src/parquet/encryption/encryption_internal.h | 27 arrow-20.0.0/arrow/tools/cpp/src/parquet/encryption/encryption_internal_nossl.cc | 15 arrow-20.0.0/arrow/tools/cpp/src/parquet/encryption/internal_file_decryptor.cc | 207 - arrow-20.0.0/arrow/tools/cpp/src/parquet/encryption/internal_file_decryptor.h | 101 arrow-20.0.0/arrow/tools/cpp/src/parquet/encryption/internal_file_encryptor.cc | 22 arrow-20.0.0/arrow/tools/cpp/src/parquet/encryption/internal_file_encryptor.h | 1 arrow-20.0.0/arrow/tools/cpp/src/parquet/encryption/test_encryption_util.cc | 6 arrow-20.0.0/arrow/tools/cpp/src/parquet/file_reader.cc | 61 arrow-20.0.0/arrow/tools/cpp/src/parquet/file_writer.cc | 18 arrow-20.0.0/arrow/tools/cpp/src/parquet/metadata.cc | 32 arrow-20.0.0/arrow/tools/cpp/src/parquet/page_index.cc | 14 arrow-20.0.0/arrow/tools/cpp/src/parquet/page_index_benchmark.cc | 4 arrow-20.0.0/arrow/tools/cpp/src/parquet/properties.h | 6 arrow-20.0.0/arrow/tools/cpp/src/parquet/type_fwd.h | 6 arrow-20.0.0/arrow/tools/cpp/src/parquet/types.cc | 3 arrow-20.0.0/arrow/tools/cpp/subprojects |only arrow-20.0.0/arrow/tools/cpp/thirdparty/flatbuffers/README.md | 2 arrow-20.0.0/arrow/tools/cpp/thirdparty/flatbuffers/include/flatbuffers/base.h | 21 arrow-20.0.0/arrow/tools/cpp/thirdparty/flatbuffers/include/flatbuffers/flatbuffer_builder.h | 67 arrow-20.0.0/arrow/tools/cpp/thirdparty/flatbuffers/include/flatbuffers/flatbuffers.h | 16 arrow-20.0.0/arrow/tools/cpp/thirdparty/flatbuffers/include/flatbuffers/stl_emulation.h | 3 arrow-20.0.0/arrow/tools/cpp/thirdparty/flatbuffers/include/flatbuffers/string.h | 5 arrow-20.0.0/arrow/tools/cpp/thirdparty/versions.txt | 21 arrow-20.0.0/arrow/tools/cpp/vcpkg.json | 19 arrow-20.0.0/arrow/tools/dotenv | 16 arrow-20.0.0/arrow/tools/nixlibs.R | 10 arrow-20.0.0/arrow/tools/update-checksums.R | 9 268 files changed, 5321 insertions(+), 5748 deletions(-)
Title: Implements the SoftBart Algorithm
Description: Implements the SoftBart model of described by Linero and Yang (2018) <doi:10.1111/rssb.12293>, with the optional use of a sparsity-inducing prior to allow for variable selection. For usability, the package maintains the same style as the 'BayesTree' package.
Author: Antonio R. Linero [aut, cre]
Maintainer: Antonio R. Linero <antonio.linero@austin.utexas.edu>
Diff between SoftBart versions 1.0.1 dated 2022-10-29 and 1.0.2 dated 2025-05-10
SoftBart-1.0.1/SoftBart/inst/scripts |only SoftBart-1.0.2/SoftBart/DESCRIPTION | 10 +++---- SoftBart-1.0.2/SoftBart/MD5 | 28 +++++++++------------ SoftBart-1.0.2/SoftBart/NEWS.md | 7 ++++- SoftBart-1.0.2/SoftBart/R/MakeForest.R | 6 ++-- SoftBart-1.0.2/SoftBart/R/gsoftbart_regression.R | 5 +++ SoftBart-1.0.2/SoftBart/R/softbart_probit.R | 5 +++ SoftBart-1.0.2/SoftBart/R/softbart_regression.R | 5 +++ SoftBart-1.0.2/SoftBart/R/vc_softbart_regression.R | 5 +++ SoftBart-1.0.2/SoftBart/build/vignette.rds |binary SoftBart-1.0.2/SoftBart/inst/CITATION | 11 ++------ SoftBart-1.0.2/SoftBart/inst/doc/SoftBart-Vig.pdf |binary SoftBart-1.0.2/SoftBart/man/MakeForest.Rd | 6 ++-- SoftBart-1.0.2/SoftBart/src/RcppExports.cpp | 5 +++ 14 files changed, 57 insertions(+), 36 deletions(-)
Title: Extract Matching Lines from Matching Files
Description: Provides a simple interface to recursively list files from a
directory, filter them using a regular expression, read their
contents, and extract lines that match a user-defined pattern. The
package returns a dataframe containing the matched lines, their
line numbers, file paths, and the corresponding matched substrings.
Designed for quick code base exploration, log inspection, or any use
case involving pattern-based file and line filtering.
Author: Sacha Martingay [aut, cre, cph]
Maintainer: Sacha Martingay <martingay.sacha@hotmail.com>
Diff between seekr versions 0.1.2 dated 2025-05-05 and 0.1.3 dated 2025-05-10
DESCRIPTION | 6 MD5 | 51 ++-- NEWS.md | 6 R/filter-files.R | 363 +++++++++++++++----------------- R/list-files.R | 168 +++++++------- R/prepare_df.R | 102 ++++---- R/read-filter-lines.R | 138 ++++++------ R/seek.R | 352 +++++++++++++++---------------- R/test_wclass.R |only R/utils.R | 146 ++++++------ README.md | 2 man/extract_lower_file_extension.Rd | 40 +-- man/filter_files.Rd | 74 +++--- man/has_known_nontext_extension.Rd | 38 +-- man/has_known_text_extension.Rd | 38 +-- man/is_in_gitfolder.Rd | 42 +-- man/list_files.Rd | 80 +++---- man/prepare_df.Rd | 92 ++++---- man/read_filter_lines.Rd | 80 +++---- man/seek_lines.Rd | 68 ++--- tests/testthat/helper-seek.R | 53 ++-- tests/testthat/test-filter-files.R | 260 +++++++++++----------- tests/testthat/test-list-files.R | 14 - tests/testthat/test-prepare_df.R | 182 ++++++++-------- tests/testthat/test-read-filter-lines.R | 214 +++++++++--------- tests/testthat/test-seek.R | 274 ++++++++++++------------ tests/testthat/test-zzz.R | 47 ++-- 27 files changed, 1469 insertions(+), 1461 deletions(-)
Title: Visualize Simple 2-D Decision Tree Partitions
Description: Visualize the partitions of simple decision trees, involving one or
two predictors, on the scale of the original data. Provides an intuitive
alternative to traditional tree diagrams, by visualizing how a decision tree
divides the predictor space in a simple 2D plot alongside the original data.
The 'parttree' package supports both classification and regression trees
from 'rpart' and 'partykit', as well as trees produced by popular frontend
systems like 'tidymodels' and 'mlr3'. Visualization methods are provided for
both base R graphics and 'ggplot2'.
Author: Grant McDermott [aut, cre] ,
Achim Zeileis [ctb] ,
Brian Heseung Kim [ctb] ,
Julia Silge [ctb]
Maintainer: Grant McDermott <gmcd@amazon.com>
Diff between parttree versions 0.1.0 dated 2025-01-16 and 0.1.1 dated 2025-05-10
DESCRIPTION | 27 - MD5 | 20 NEWS.md | 8 build/vignette.rds |binary inst/doc/parttree-art.Rmd | 4 inst/doc/parttree-art.html | 26 - inst/doc/parttree-intro.html | 20 inst/tinytest/_tinysnapshot/iris_classification.svg | 54 +- inst/tinytest/_tinysnapshot/iris_classification_flip.svg | 54 +- inst/tinytest/_tinysnapshot/iris_regression.svg | 384 +++++++-------- vignettes/parttree-art.Rmd | 4 11 files changed, 315 insertions(+), 286 deletions(-)
Title: Multiple Imputation for Exploratory Factor Analysis
Description: Impute the covariance matrix of incomplete data so that factor
analysis can be performed. Imputations are made using multiple imputation
by Multivariate Imputation with Chained Equations (MICE) and combined with
Rubin's rules. Parametric Fieller confidence intervals and nonparametric
bootstrap confidence intervals can be obtained for the variance explained by
different numbers of principal components. The method is described in
Nassiri et al. (2018) <doi:10.3758/s13428-017-1013-4>.
Author: Vahid Nassiri [aut],
Aniko Lovik [aut],
Geert Molenberghs [aut],
Geert Verbeke [aut],
Tobias Busch [aut, cre]
Maintainer: Tobias Busch <teebusch@gmail.com>
Diff between mifa versions 0.2.0 dated 2021-01-22 and 0.2.1 dated 2025-05-10
DESCRIPTION | 12 LICENSE | 4 MD5 | 48 NAMESPACE | 14 NEWS.md | 55 R/mice-helpers.R | 112 - R/mifa-ci.R | 536 ++++----- R/mifa-helpers.R | 40 R/mifa.R | 464 ++++---- README.md | 377 +++--- build/partial.rdb |binary man/clean_n_pc.Rd | 40 man/combine_rubin.Rd | 68 - man/figures/README-fa-diagram-1.svg | 989 ++++++++--------- man/figures/README-fa-group-comparison-1.svg | 1545 +++++++++++++-------------- man/get_fieller_ci.Rd | 68 - man/mice_impute_all_NA.Rd | 46 man/mice_impute_once.Rd | 36 man/mifa.Rd | 396 +++--- man/mifa_ci_boot.Rd | 368 +++--- man/mifa_ci_fieller.Rd | 114 - man/stop_constants.Rd | 42 tests/testthat.R | 8 tests/testthat/test-mifa-ci.R | 170 +- tests/testthat/test-mifa.R | 282 ++-- 25 files changed, 2915 insertions(+), 2919 deletions(-)
Title: Beta Regression
Description: Beta regression for modeling beta-distributed dependent variables on the open unit interval (0, 1),
e.g., rates and proportions, see Cribari-Neto and Zeileis (2010) <doi:10.18637/jss.v034.i02>.
Moreover, extended-support beta regression models can accommodate dependent variables with
boundary observations at 0 and/or 1, see Kosmidis and Zeileis (2024) <doi:10.48550/arXiv.2409.07233>.
For the classical beta regression model, alternative specifications are provided:
Bias-corrected and bias-reduced estimation, finite mixture models, and recursive partitioning for
beta regression, see Grün, Kosmidis, and Zeileis (2012) <doi:10.18637/jss.v048.i11>.
Author: Achim Zeileis [aut, cre] ,
Francisco Cribari-Neto [aut] ,
Bettina Gruen [aut] ,
Ioannis Kosmidis [aut] ,
Alexandre B. Simas [ctb] ,
Andrea V. Rocha [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between betareg versions 3.2-2 dated 2025-03-14 and 3.2-3 dated 2025-05-10
DESCRIPTION | 23 ++++++++------- MD5 | 20 ++++++------- NEWS.md | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/betareg-ext.R | 26 ++++++++--------- inst/doc/betareg-ext.html | 39 +++----------------------- inst/doc/betareg.R | 6 ++-- inst/doc/betareg.html | 39 +++----------------------- man/betar_family.Rd | 2 - tests/Examples/betareg-Ex.Rout.save | 54 ++++++++++++++++++------------------ 11 files changed, 78 insertions(+), 132 deletions(-)
Title: Text Based Plots
Description: Provides functions to produce rudimentary ascii graphics
directly in the terminal window. Provides a basic plotting
function (and equivalents of curve, density, acf and barplot)
as well as boxplot and image functions.
Author: Bjoern Bornkamp [aut, cre],
Ivan Krylov [ctb]
Maintainer: Bjoern Bornkamp <bbnkmp@mail.de>
Diff between txtplot versions 1.0-4 dated 2020-04-05 and 1.0-5 dated 2025-05-10
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- R/txtimage.R | 30 +++++++++++++++++++----------- 3 files changed, 26 insertions(+), 17 deletions(-)
Title: Stable Iterative Variable Selection
Description: An iterative feature selection method that internally utilizes
various Machine Learning methods that have embedded feature reduction in
order to shrink down the feature space into a small and yet robust set.
Author: Mehrad Mahmoudian [aut, cre] ,
Mikko Venaelaeinen [aut, rev] ,
Riku Klen [aut, ths] ,
Laura Elo [aut, ths, fnd]
Maintainer: Mehrad Mahmoudian <m.mahmoudian@gmail.com>
Diff between sivs versions 0.2.10 dated 2023-10-31 and 0.2.11 dated 2025-05-10
DESCRIPTION | 30 ++--- MD5 | 26 ++-- NEWS.md | 7 + R/is.sivs.R | 2 R/plot.sivs.R | 8 - R/sivs.R | 6 - R/str.sivs.R | 4 R/suggest.R | 8 - R/zzz.R | 2 build/vignette.rds |binary inst/doc/vignette_simple_usage.R | 14 ++ inst/doc/vignette_simple_usage.Rmd | 12 +- inst/doc/vignette_simple_usage.html | 212 ++++++++++++++---------------------- vignettes/vignette_simple_usage.Rmd | 12 +- 14 files changed, 173 insertions(+), 170 deletions(-)
Title: Rcpp Bindings for Sequential Monte Carlo
Description: R access to the Sequential Monte Carlo Template Classes
by Johansen <doi:10.18637/jss.v030.i06> is provided. At present, four
additional examples have been added, and the first example from the JSS
paper has been extended. Further integration and extensions are planned.
Author: Dirk Eddelbuettel [aut, cre] ,
Adam M. Johansen [aut] ,
Leah F. South [aut] ,
Ilya Zarubin [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSMC versions 0.2.7 dated 2023-03-22 and 0.2.8 dated 2025-05-10
ChangeLog | 29 +++++++++++++++++++++++++++++ DESCRIPTION | 23 +++++++++++++++++------ MD5 | 12 ++++++------ build/partial.rdb |binary data/radiata.rda |binary inst/NEWS.Rd | 8 ++++++++ man/cSMCexamples.Rd | 16 ++++++++-------- 7 files changed, 68 insertions(+), 20 deletions(-)
Title: Nonparametric and Semiparametric Mixture Estimation
Description: Mainly for maximum likelihood estimation of nonparametric
and semiparametric mixture models, but can also be used
for fitting finite mixtures. The algorithms are
developed in Wang (2007)
<doi:10.1111/j.1467-9868.2007.00583.x> and Wang (2010)
<doi:10.1007/s11222-009-9117-z>.
Author: Yong Wang [aut, cre]
Maintainer: Yong Wang <yongwang@auckland.ac.nz>
Diff between nspmix versions 1.5-0 dated 2020-09-20 and 2.0-0 dated 2025-05-10
DESCRIPTION | 18 MD5 | 76 +- NAMESPACE | 155 ++++- R/cnm.R | 1502 ++++++++++++++++++++++++++++++++------------------- R/cvp.R | 184 +++--- R/disc.R | 201 ++++-- R/mlogit.R | 192 +++--- R/npgeom.R |only R/npnbinom.R |only R/npnorm.R | 304 ++++++---- R/nppois.R | 377 ++++++++---- R/nspmix-package.R | 447 +++++++-------- R/utils.R | 87 +- data/thai.rda |binary man/betablockers.Rd | 1 man/brca.Rd | 1 man/cnm.Rd | 184 +++--- man/cnmms.Rd | 173 +++-- man/cvps.Rd | 106 +-- man/disc.Rd | 26 man/dmix.Rd |only man/gridpoints.Rd |only man/hcnm.Rd |only man/initial.Rd |only man/initial0.Rd |only man/llex.Rd |only man/llexdb.Rd |only man/logd.Rd |only man/loglik.Rd |only man/lungcancer.Rd | 1 man/mlogit.Rd | 101 +-- man/npgeom.Rd |only man/npnbinom.Rd |only man/npnorm.Rd | 99 +-- man/nppois.Rd | 79 +- man/plot.disc.Rd |only man/plot.npgeom.Rd |only man/plot.npnbinom.Rd |only man/plot.npnorm.Rd |only man/plot.nppois.Rd |only man/plot.nspmix.Rd | 39 + man/plotgrad.Rd | 45 - man/print.disc.Rd |only man/sort.npnorm.Rd |only man/sort.nppois.Rd |only man/suppspace.Rd |only man/thai.Rd | 1 man/toxo.Rd | 1 man/valid.Rd |only man/weight.Rd |only man/whist.Rd | 50 + 51 files changed, 2692 insertions(+), 1758 deletions(-)
Title: Multiple Bias Analysis in Causal Inference
Description: Quantify the causal effect of a binary exposure on a binary
outcome with adjustment for multiple biases. The functions can
simultaneously adjust for any combination of uncontrolled confounding,
exposure/outcome misclassification, and selection bias.
The underlying method generalizes the concept of combining inverse
probability of selection weighting with predictive value weighting.
Simultaneous multi-bias analysis can be used to enhance the validity
and transparency of real-world evidence obtained from observational,
longitudinal studies. Based on the work from Paul Brendel, Aracelis Torres,
and Onyebuchi Arah (2023) <doi:10.1093/ije/dyad001>.
Author: Paul Brendel [aut, cre, cph]
Maintainer: Paul Brendel <pcbrendel@gmail.com>
Diff between multibias versions 1.7 dated 2025-04-08 and 1.7.1 dated 2025-05-10
DESCRIPTION | 10 MD5 | 92 ++-- NAMESPACE | 5 NEWS.md | 8 R/adjust_em.R | 171 ++------- R/adjust_em_om.R | 482 ++++++------------------- R/adjust_em_sel.R | 262 +++---------- R/adjust_om.R | 130 +----- R/adjust_om_sel.R | 208 +++------- R/adjust_sel.R | 160 +------- R/adjust_uc.R | 165 ++------ R/adjust_uc_em.R | 531 ++++++--------------------- R/adjust_uc_em_sel.R | 627 +++++++-------------------------- R/adjust_uc_om.R | 445 ++++++----------------- R/adjust_uc_om_sel.R | 553 +++++++---------------------- R/adjust_uc_sel.R | 240 +++--------- R/causal_data.R | 42 ++ R/multibias_adjust.R | 55 ++ R/utils.R | 22 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/evans_example.R | 54 +- inst/doc/evans_example.Rmd | 78 ++-- inst/doc/evans_example.html | 167 +++++--- inst/doc/multibias.R | 31 - inst/doc/multibias.Rmd | 33 - inst/doc/multibias.html | 54 -- inst/doc/multibias_validation.R | 125 ++---- inst/doc/multibias_validation.Rmd | 106 ++--- inst/doc/multibias_validation.html | 213 +++++------ man/multibias-package.Rd | 2 man/multibias_adjust.Rd | 15 tests/testthat/test-adjust_em.R | 68 +-- tests/testthat/test-adjust_em_om.R | 130 +----- tests/testthat/test-adjust_em_sel.R | 70 +-- tests/testthat/test-adjust_om.R | 68 +-- tests/testthat/test-adjust_om_sel.R | 69 +-- tests/testthat/test-adjust_sel.R | 68 +-- tests/testthat/test-adjust_uc.R | 71 +-- tests/testthat/test-adjust_uc_em.R | 134 +------ tests/testthat/test-adjust_uc_em_sel.R | 146 ++----- tests/testthat/test-adjust_uc_om.R | 174 +++------ tests/testthat/test-adjust_uc_om_sel.R | 142 ++----- tests/testthat/test-adjust_uc_sel.R | 64 --- vignettes/evans_example.Rmd | 78 ++-- vignettes/multibias.Rmd | 33 - vignettes/multibias_validation.Rmd | 106 ++--- 47 files changed, 2025 insertions(+), 4482 deletions(-)
Title: Nested Cross Validation for the Relaxed Lasso and Other Machine
Learning Models
Description: Cross validation informed Relaxed LASSO (or more generally elastic net), gradient boosting machine ('xgboost'), Random Forest ('RandomForestSRC'), Oblique Random Forest ('aorsf'), Artificial Neural Network (ANN), Recursive Partitioning ('RPART') or step wise regression models are fit. Cross validation leave out samples (leading to nested cross validation) or bootstrap out-of-bag samples are used to evaluate and compare performances between these models with results presented in tabular or graphical means. Calibration plots can also be generated, again based upon (outer nested) cross validation or bootstrap leave out (out of bag) samples.
For some datasets, for example when the design matrix is not of full rank, 'glmnet' may have very long run times when fitting the relaxed lasso model, from our experience when fitting Cox models on data with many predictors and many patients. This may be remedied by using the 'path=TRUE' option, which is passed to the glmnet() and cv.glmnet() calls.
O [...truncated...]
Author: Walter K Kremers [aut, cre] ,
Nicholas B Larson [ctb]
Maintainer: Walter K Kremers <kremers.walter@mayo.edu>
Diff between glmnetr versions 0.5-5 dated 2025-01-17 and 0.6-1 dated 2025-05-10
glmnetr-0.5-5/glmnetr/R/ann_tab_cv_240422.R |only glmnetr-0.5-5/glmnetr/R/calplot_241224.R |only glmnetr-0.5-5/glmnetr/R/cv.glmnetr_240422.R |only glmnetr-0.5-5/glmnetr/R/nested.cis_240708.R |only glmnetr-0.5-5/glmnetr/R/nested.compare_241224.R |only glmnetr-0.5-5/glmnetr/R/nested.glmnetr_241224.R |only glmnetr-0.5-5/glmnetr/R/perform_240708.R |only glmnetr-0.5-5/glmnetr/R/plot.cv.glmnetr_241220.R |only glmnetr-0.5-5/glmnetr/R/plot.nested.glmnetr_241220.R |only glmnetr-0.5-5/glmnetr/R/plot.perf.glmnetr_241104.R |only glmnetr-0.5-5/glmnetr/R/predict_240608.R |only glmnetr-0.5-5/glmnetr/R/predict_ann_tab_240322.R |only glmnetr-0.5-5/glmnetr/R/summary.cv.glmnetr_240608.R |only glmnetr-0.5-5/glmnetr/R/summary.nested.glmnetr_241104.R |only glmnetr-0.5-5/glmnetr/inst/doc/An_Overview_of_glmnetr_241228.pdf |only glmnetr-0.5-5/glmnetr/inst/doc/An_Overview_of_glmnetr_241228.pdf.asis |only glmnetr-0.5-5/glmnetr/inst/doc/Calibration_241228.pdf |only glmnetr-0.5-5/glmnetr/inst/doc/Calibration_241228.pdf.asis |only glmnetr-0.5-5/glmnetr/inst/doc/Ridge_and_Lasso_241228.pdf |only glmnetr-0.5-5/glmnetr/inst/doc/Ridge_and_Lasso_241228.pdf.asis |only glmnetr-0.5-5/glmnetr/inst/doc/Using_ann_tab_cv_241228.pdf |only glmnetr-0.5-5/glmnetr/inst/doc/Using_ann_tab_cv_241228.pdf.asis |only glmnetr-0.5-5/glmnetr/inst/doc/Using_stepreg_241228.pdf |only glmnetr-0.5-5/glmnetr/inst/doc/Using_stepreg_241228.pdf.asis |only glmnetr-0.5-5/glmnetr/man/glmnetr.Rd |only glmnetr-0.5-5/glmnetr/man/predict.glmnetr.Rd |only glmnetr-0.5-5/glmnetr/vignettes/An_Overview_of_glmnetr_241228.Rmd |only glmnetr-0.5-5/glmnetr/vignettes/An_Overview_of_glmnetr_241228.pdf.asis |only glmnetr-0.5-5/glmnetr/vignettes/Calibration_241228.Rmd |only glmnetr-0.5-5/glmnetr/vignettes/Calibration_241228.pdf.asis |only glmnetr-0.5-5/glmnetr/vignettes/Ridge_and_Lasso_241228.Rmd |only glmnetr-0.5-5/glmnetr/vignettes/Ridge_and_Lasso_241228.pdf.asis |only glmnetr-0.5-5/glmnetr/vignettes/Using_ann_tab_cv_241228.Rmd |only glmnetr-0.5-5/glmnetr/vignettes/Using_ann_tab_cv_241228.pdf.asis |only glmnetr-0.5-5/glmnetr/vignettes/Using_stepreg_241228.Rmd |only glmnetr-0.5-5/glmnetr/vignettes/Using_stepreg_241228.pdf.asis |only glmnetr-0.6-1/glmnetr/DESCRIPTION | 19 - glmnetr-0.6-1/glmnetr/MD5 | 148 +++++----- glmnetr-0.6-1/glmnetr/NAMESPACE | 13 glmnetr-0.6-1/glmnetr/R/ann_tab_cv_250428.R |only glmnetr-0.6-1/glmnetr/R/calplot_240404.R |only glmnetr-0.6-1/glmnetr/R/cv.glmnetr_250418.R |only glmnetr-0.6-1/glmnetr/R/cv.glmnetr_perf_250504.R |only glmnetr-0.6-1/glmnetr/R/getlamgam_250404.R |only glmnetr-0.6-1/glmnetr/R/nested.cis_250416.R |only glmnetr-0.6-1/glmnetr/R/nested.compare_0_6_1_250416.R |only glmnetr-0.6-1/glmnetr/R/nested.compare_250428.R |only glmnetr-0.6-1/glmnetr/R/nested.glmnetr_250424.R |only glmnetr-0.6-1/glmnetr/R/perform_250328.R |only glmnetr-0.6-1/glmnetr/R/plot.cv.glmnetr_0_5_5_250328.R |only glmnetr-0.6-1/glmnetr/R/plot.cv.glmnetr_0_6_1_250503.R |only glmnetr-0.6-1/glmnetr/R/plot.cv.glmnetr_250503.R |only glmnetr-0.6-1/glmnetr/R/plot.nested.glmnetr_250501.R |only glmnetr-0.6-1/glmnetr/R/plot_perf_glmnetr_0_5_5_241104.R |only glmnetr-0.6-1/glmnetr/R/plot_perf_glmnetr_0_6_1_250416.R |only glmnetr-0.6-1/glmnetr/R/plot_perf_glmnetr_250328.R |only glmnetr-0.6-1/glmnetr/R/predict.cv.glmnetr.list_250404.R |only glmnetr-0.6-1/glmnetr/R/predict.cv.glmnetr_0_5_5_250404.R |only glmnetr-0.6-1/glmnetr/R/predict.cv.glmnetr_0_6_1_250502.R |only glmnetr-0.6-1/glmnetr/R/predict.cv.glmnetr_250404.R |only glmnetr-0.6-1/glmnetr/R/predict.glmnetr_0_5_5_250404.R |only glmnetr-0.6-1/glmnetr/R/predict.nested.glmnetr_250504.R |only glmnetr-0.6-1/glmnetr/R/predict_250422.R |only glmnetr-0.6-1/glmnetr/R/predict_ann_tab_250428.R |only glmnetr-0.6-1/glmnetr/R/summary.cv.glmnetr_0_5_5_250404.R |only glmnetr-0.6-1/glmnetr/R/summary.cv.glmnetr_0_6_1_250501.R |only glmnetr-0.6-1/glmnetr/R/summary.cv.glmnetr_250502.R |only glmnetr-0.6-1/glmnetr/R/summary.nested.glmnetr_0_5_1_241104.R | 2 glmnetr-0.6-1/glmnetr/R/summary.nested.glmnetr_0_6_1_250502.R |only glmnetr-0.6-1/glmnetr/R/summary.nested.glmnetr_250328.R |only glmnetr-0.6-1/glmnetr/R/tools_241106.R | 5 glmnetr-0.6-1/glmnetr/build/vignette.rds |binary glmnetr-0.6-1/glmnetr/inst/doc/An_Overview_of_glmnetr_250510.pdf |only glmnetr-0.6-1/glmnetr/inst/doc/An_Overview_of_glmnetr_250510.pdf.asis |only glmnetr-0.6-1/glmnetr/inst/doc/Calibration_250510.pdf |only glmnetr-0.6-1/glmnetr/inst/doc/Calibration_250510.pdf.asis |only glmnetr-0.6-1/glmnetr/inst/doc/Elastic_net_models_250510.pdf |only glmnetr-0.6-1/glmnetr/inst/doc/Elastic_net_models_250510.pdf.asis |only glmnetr-0.6-1/glmnetr/inst/doc/Ridge_and_Lasso_250510.pdf |only glmnetr-0.6-1/glmnetr/inst/doc/Ridge_and_Lasso_250510.pdf.asis |only glmnetr-0.6-1/glmnetr/inst/doc/Using_ann_tab_cv_250510.pdf |only glmnetr-0.6-1/glmnetr/inst/doc/Using_ann_tab_cv_250510.pdf.asis |only glmnetr-0.6-1/glmnetr/inst/doc/Using_stepreg_250510.pdf |only glmnetr-0.6-1/glmnetr/inst/doc/Using_stepreg_250510.pdf.asis |only glmnetr-0.6-1/glmnetr/man/ann_tab_cv.Rd | 2 glmnetr-0.6-1/glmnetr/man/ann_tab_cv_best.Rd | 2 glmnetr-0.6-1/glmnetr/man/calceloss.Rd | 2 glmnetr-0.6-1/glmnetr/man/calplot.Rd | 2 glmnetr-0.6-1/glmnetr/man/cv.glmnetr.Rd | 84 ++--- glmnetr-0.6-1/glmnetr/man/glmnetr.cis.Rd | 2 glmnetr-0.6-1/glmnetr/man/glmnetr.compcv.Rd | 2 glmnetr-0.6-1/glmnetr/man/glmnetr.simdata.Rd | 5 glmnetr-0.6-1/glmnetr/man/nested.cis.Rd | 6 glmnetr-0.6-1/glmnetr/man/nested.compare.Rd | 2 glmnetr-0.6-1/glmnetr/man/nested.glmnetr.Rd | 73 +++- glmnetr-0.6-1/glmnetr/man/plot.cv.glmnetr.Rd | 50 +-- glmnetr-0.6-1/glmnetr/man/plot.glmnetr.Rd | 52 ++- glmnetr-0.6-1/glmnetr/man/plot.nested.glmnetr.Rd | 58 ++- glmnetr-0.6-1/glmnetr/man/plot_perf_glmnetr.Rd | 15 - glmnetr-0.6-1/glmnetr/man/plot_perf_glmnetr_0_5_5.Rd |only glmnetr-0.6-1/glmnetr/man/predict.cv.glmnetr.Rd | 49 +-- glmnetr-0.6-1/glmnetr/man/predict.cv.glmnetr.el.Rd |only glmnetr-0.6-1/glmnetr/man/predict.cv.glmnetr.list.Rd |only glmnetr-0.6-1/glmnetr/man/predict.nested.glmnetr.Rd | 33 +- glmnetr-0.6-1/glmnetr/man/predict_ann_tab.Rd | 2 glmnetr-0.6-1/glmnetr/man/print.nested.glmnetr.Rd | 2 glmnetr-0.6-1/glmnetr/man/roundperf.Rd | 2 glmnetr-0.6-1/glmnetr/man/summary.cv.glmnetr.Rd | 25 - glmnetr-0.6-1/glmnetr/man/summary.cv.glmnetr_0_6_1.Rd |only glmnetr-0.6-1/glmnetr/man/summary.nested.glmnetr.Rd | 6 glmnetr-0.6-1/glmnetr/vignettes/An_Overview_of_glmnetr_250510.Rmd |only glmnetr-0.6-1/glmnetr/vignettes/An_Overview_of_glmnetr_250510.pdf.asis |only glmnetr-0.6-1/glmnetr/vignettes/Calibration_250510.Rmd |only glmnetr-0.6-1/glmnetr/vignettes/Calibration_250510.pdf.asis |only glmnetr-0.6-1/glmnetr/vignettes/Elastic_net_models_250510.Rmd |only glmnetr-0.6-1/glmnetr/vignettes/Elastic_net_models_250510.pdf.asis |only glmnetr-0.6-1/glmnetr/vignettes/Ridge_and_Lasso_250510.Rmd |only glmnetr-0.6-1/glmnetr/vignettes/Ridge_and_Lasso_250510.pdf.asis |only glmnetr-0.6-1/glmnetr/vignettes/Using_ann_tab_cv_250510.Rmd |only glmnetr-0.6-1/glmnetr/vignettes/Using_ann_tab_cv_250510.pdf.asis |only glmnetr-0.6-1/glmnetr/vignettes/Using_stepreg_250510.Rmd |only glmnetr-0.6-1/glmnetr/vignettes/Using_stepreg_250510.pdf.asis |only 122 files changed, 381 insertions(+), 282 deletions(-)
Title: Tools for Creating and Visualizing Fixed-Effects Event Study
Models
Description: Provides functions for creating, analyzing, and visualizing event study models using fixed-effects regression.
Author: Yosuke Abe [aut, cre]
Maintainer: Yosuke Abe <yosuke.abe0507@gmail.com>
Diff between fixes versions 0.2.0 dated 2025-04-23 and 0.2.1 dated 2025-05-10
DESCRIPTION | 6 +-- MD5 | 14 ++++---- NAMESPACE | 1 NEWS.md | 17 ++++++++- R/event_study.R | 79 ++++++++++++++++++++++++++++++---------------- README.md | 46 +++++++++++++++++--------- inst/doc/fixes-intro.html | 4 +- man/run_es.Rd | 54 +++++++++++++++++++------------ 8 files changed, 144 insertions(+), 77 deletions(-)
Title: Interactive and Reproducible Data Cleaning
Description: Flexible and efficient cleaning of data with interactivity.
'datacleanr' facilitates best practices in data analyses and reproducibility with built-in features and by translating interactive/manual operations to code.
The package is designed for interoperability, and so seamlessly fits into reproducible analyses pipelines in 'R'.
Author: Alexander Hurley [cre, aut, cph] ,
Richard Peters [ctb] ,
Christoforos Pappas [ctb]
Maintainer: Alexander Hurley <agl.hurley@gmail.com>
Diff between datacleanr versions 1.0.3 dated 2021-11-18 and 1.0.5 dated 2025-05-10
DESCRIPTION | 31 ++++++++++++++++--------------- MD5 | 14 +++++++------- NEWS.md | 16 ++++++++++++++++ R/datacleanr_app.R | 2 +- R/module_plot_selectable.R | 4 ++++ R/utils.R | 2 +- README.md | 17 ++++++++++++----- man/dcr_app.Rd | 8 +++++--- 8 files changed, 62 insertions(+), 32 deletions(-)
Title: Interactive Graphics for QTL Experiments
Description: Web-based interactive charts (using D3.js) for the analysis of
experimental crosses to identify genetic loci (quantitative trait
loci, QTL) contributing to variation in quantitative traits.
Broman (2015) <doi:10.1534/genetics.114.172742>.
Author: Karl W Broman [aut, cre] ,
Michael Bostock [ctb, cph] ,
jQuery Foundation [cph] ,
jQuery contributors [ctb] ,
jQuery UI contributors [ctb]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtlcharts versions 0.16 dated 2022-01-07 and 0.18 dated 2025-05-10
DESCRIPTION | 13 ++-- LICENSE | 2 MD5 | 72 ++++++++++++------------- NEWS.md | 15 ++++- R/iplot.R | 2 R/qtlcharts.R | 2 README.md | 3 - data/geneExpr.rda |binary data/grav.rda |binary inst/CITATION | 4 - inst/LICENSE | 2 inst/htmlwidgets/iboxplot.yaml | 6 +- inst/htmlwidgets/idotplot.yaml | 6 +- inst/htmlwidgets/iheatmap.yaml | 6 +- inst/htmlwidgets/ipleiotropy.yaml | 6 +- inst/htmlwidgets/iplot.yaml | 6 +- inst/htmlwidgets/iplotCorr.yaml | 6 +- inst/htmlwidgets/iplotCurves.yaml | 6 +- inst/htmlwidgets/iplotMScanone.yaml | 6 +- inst/htmlwidgets/iplotMap.yaml | 8 +- inst/htmlwidgets/iplotRF.yaml | 6 +- inst/htmlwidgets/iplotScanone.yaml | 6 +- inst/htmlwidgets/iplotScantwo.yaml | 6 +- inst/htmlwidgets/itriplot.yaml | 6 +- inst/htmlwidgets/lib/d3/LICENSE | 2 inst/htmlwidgets/lib/d3/d3.min.js | 4 - inst/htmlwidgets/lib/d3/package.json | 29 ++++++---- inst/htmlwidgets/lib/d3panels/LICENSE.md | 2 inst/htmlwidgets/lib/d3panels/README.md | 1 inst/htmlwidgets/lib/d3panels/d3panels.min.js | 2 inst/htmlwidgets/lib/d3panels/package.json | 6 +- inst/htmlwidgets/lib/jquery/README.md | 12 +--- inst/htmlwidgets/lib/jquery/dist/jquery.min.js | 4 - inst/htmlwidgets/package.json | 2 inst/htmlwidgets/scat2scat.yaml | 6 +- man/iplot.Rd | 2 man/qtlcharts-package.Rd | 2 37 files changed, 143 insertions(+), 126 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-20 1.2.3
2015-12-19 1.2.1
2015-07-24 1.2
2014-08-13 1.0
2014-03-29 0.2.4
2014-03-01 0.2.3
2014-01-04 0.2.2
2013-12-18 0.2.1
2013-11-06 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-16 0.4.2
2022-11-01 0.4.1
2021-11-12 0.4
2020-10-10 0.3.4
2020-09-01 0.3.3
2020-05-18 0.3.2
2020-04-27 0.3.1
2019-05-31 0.3
2018-10-21 0.2