Title: Online Principal Component Regression for Online Datasets
Description: The online principal component regression method can process the online data set. 'OPCreg' implements the online principal component regression method, which is specifically designed to process online datasets efficiently. This method is particularly useful for handling large-scale, streaming data where traditional batch processing methods may be computationally infeasible.The philosophy of the package is described in 'Guo' (2025) <doi:10.1016/j.physa.2024.130308>.
Author: Guangbao Guo [aut, cre] ,
Chunjie Wei [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between OPCreg versions 1.0.0 dated 2025-05-21 and 2.0.0 dated 2025-05-29
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- data/protein.rda |binary 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Metabolomics Data Analysis Functions
Description: A collection of functions for processing and analyzing metabolite data.
The namesake function mrbin() converts 1D
or 2D Nuclear Magnetic Resonance data into a matrix of values suitable for further data analysis and
performs basic processing steps in a reproducible way. Negative values, a
common issue in such data, can be replaced by positive values (<doi:10.1021/acs.jproteome.0c00684>). All used
parameters are stored in a readable text file and can be restored from that
file to enable exact reproduction of the data at a later time. The function fia() ranks features according
to their impact on classifier models, especially artificial neural network models.
Author: Matthias Klein [aut, cre]
Maintainer: Matthias Klein <matthias.s.klein@gmx.net>
Diff between mrbin versions 1.9.2 dated 2025-05-19 and 1.9.3 dated 2025-05-29
DESCRIPTION | 6 - MD5 | 26 +++--- NEWS.md | 8 + R/mrbin.R | 103 +++++++++++++++++-------- README.md | 13 +-- inst/doc/mrbin.R | 175 +++++++++++++++++++++++------------------- inst/doc/mrbin.Rnw | 180 ++++++++++++++++++++++++-------------------- inst/doc/mrbin.pdf |binary inst/extdata/data/milk.csv | 2 inst/extdata/data/serum.csv | 2 inst/extdata/data/urine.csv | 2 man/annotatemrbin.Rd | 16 ++- man/mrheatmap.Rd | 4 vignettes/mrbin.Rnw | 180 ++++++++++++++++++++++++-------------------- 14 files changed, 414 insertions(+), 303 deletions(-)
Title: Partitioned Local Depth for Community Structure in Data
Description: Implementation of the Partitioned Local Depth (PaLD)
approach which provides a measure of local depth and the cohesion of a point
to another which (together with a universal threshold for distinguishing
strong and weak ties) may be used to reveal local and global structure in
data, based on methods described in Berenhaut, Moore, and Melvin (2022)
<doi:10.1073/pnas.2003634119>. No extraneous inputs, distributional
assumptions, iterative procedures nor optimization criteria are employed.
This package includes functions for computing local depths and cohesion as
well as flexible functions for plotting community networks and displays of
cohesion against distance.
Author: Katherine Moore [aut] ,
Kenneth Berenhaut [aut],
Lucy D'Agostino McGowan [aut, cre]
Maintainer: Lucy D'Agostino McGowan <lucydagostino@gmail.com>
Diff between pald versions 0.0.4 dated 2024-04-18 and 0.0.5 dated 2025-05-29
DESCRIPTION | 14 +++++++------- MD5 | 6 +++--- NEWS.md | 4 ++++ R/pald_functions.R | 8 ++++---- 4 files changed, 18 insertions(+), 14 deletions(-)
Title: Precision Agriculture Computational Utilities
Description: Support for a variety of commonly used precision agriculture operations. Includes functions to download and process raw satellite images from Sentinel-2 <https://documentation.dataspace.copernicus.eu/APIs/OData.html>. Includes functions that download vegetation index statistics for a given period of time, without the need to download the raw images <https://documentation.dataspace.copernicus.eu/APIs/SentinelHub/Statistical.html>. There are also functions to download and visualize weather data in a historical context. Lastly, the package also contains functions to process yield monitor data. These functions can build polygons around recorded data points, evaluate the overlap between polygons, clean yield data, and smooth yield maps.
Author: dos Santos Caio [aut, cre],
Miguez Fernando [aut]
Maintainer: dos Santos Caio <clsantos@iastate.edu>
Diff between pacu versions 0.1.44 dated 2024-12-17 and 0.1.63 dated 2025-05-29
DESCRIPTION | 11 MD5 | 70 - NAMESPACE | 5 R/cardinal_dates.R |only R/dataspace.R | 10 R/get_rgb.R | 40 - R/pacu.R | 18 R/pacu_internal.R | 558 ++++++++++++-- R/plot.R | 584 +++++++++++--- R/statistics_api.R | 5 R/summary.R | 4 R/trial.R | 301 +++++-- R/vegetation_indices.R | 175 +++- R/weather_summary.R | 2 R/yield.R | 295 ++++--- R/yield_monitor.R | 6 README.md | 12 build/vignette.rds |binary inst/doc/pacu.html | 730 +++++++++--------- inst/doc/pacu_faq.R | 44 - inst/doc/pacu_faq.html | 816 ++++++++++---------- inst/doc/pacu_sat.R | 225 ++--- inst/doc/pacu_sat.Rmd | 1 inst/doc/pacu_sat.html | 1203 +++++++++++++++--------------- inst/doc/pacu_weather.R | 68 - inst/doc/pacu_weather.html | 898 +++++++++++----------- inst/doc/pacu_ym.R | 314 +++---- inst/doc/pacu_ym.html | 1784 ++++++++++++++++++++++----------------------- man/pa_cardinal_dates.Rd |only man/pa_compute_vi.Rd | 35 man/pa_get_rgb.Rd | 8 man/pa_plot.Rd | 34 man/pa_weather_summary.Rd | 2 man/pa_yield.Rd | 8 man/pacu.options.Rd | 2 man/pacu_options.Rd | 19 vignettes/pacu_sat.Rmd | 1 37 files changed, 4696 insertions(+), 3592 deletions(-)
Title: Tools for Computational Optimal Transport
Description: Transport theory has seen much success in many fields of statistics and machine learning. We provide a variety of algorithms to compute Wasserstein distance, barycenter, and others. See Peyré and Cuturi (2019) <doi:10.1561/2200000073> for the general exposition to the study of computational optimal transport.
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between T4transport versions 0.1.2 dated 2023-04-11 and 0.1.3 dated 2025-05-29
T4transport-0.1.2/T4transport/R/bary14C.R |only T4transport-0.1.2/T4transport/R/bary15B.R |only T4transport-0.1.2/T4transport/R/dist_wass_ipot.R |only T4transport-0.1.2/T4transport/R/dist_wass_sinkhorn.R |only T4transport-0.1.2/T4transport/R/dist_wass_wasserstein.R |only T4transport-0.1.2/T4transport/R/hist_median22Y.R |only T4transport-0.1.2/T4transport/R/image_median22Y.R |only T4transport-0.1.2/T4transport/R/later_gw.R |only T4transport-0.1.2/T4transport/man/bary14C.Rd |only T4transport-0.1.2/T4transport/man/bary15B.Rd |only T4transport-0.1.2/T4transport/man/figures/logo.png |only T4transport-0.1.2/T4transport/man/histmed22Y.Rd |only T4transport-0.1.2/T4transport/man/imagemed22Y.Rd |only T4transport-0.1.2/T4transport/src/src_barycenter.cpp |only T4transport-0.1.2/T4transport/src/src_distances.cpp |only T4transport-0.1.3/T4transport/DESCRIPTION | 18 - T4transport-0.1.3/T4transport/MD5 | 111 +++--- T4transport-0.1.3/T4transport/NAMESPACE | 14 T4transport-0.1.3/T4transport/NEWS.md | 7 T4transport-0.1.3/T4transport/R/RcppExports.R | 30 - T4transport-0.1.3/T4transport/R/auxiliary_compute.R |only T4transport-0.1.3/T4transport/R/dist_ipot.R |only T4transport-0.1.3/T4transport/R/dist_sinkhorn.R |only T4transport-0.1.3/T4transport/R/dist_swdist.R | 26 - T4transport-0.1.3/T4transport/R/dist_wasserstein.R |only T4transport-0.1.3/T4transport/R/fixed_bary_14C.R |only T4transport-0.1.3/T4transport/R/fixed_bary_15B.R |only T4transport-0.1.3/T4transport/R/free_bary_23L.R |only T4transport-0.1.3/T4transport/R/gauss_bary1d.R | 4 T4transport-0.1.3/T4transport/R/gauss_barypd.R | 6 T4transport-0.1.3/T4transport/R/gauss_median1d.R | 6 T4transport-0.1.3/T4transport/R/gauss_medianpd.R | 6 T4transport-0.1.3/T4transport/R/hist_bary14C.R | 6 T4transport-0.1.3/T4transport/R/hist_bary15B.R | 4 T4transport-0.1.3/T4transport/R/image_bary14C.R | 4 T4transport-0.1.3/T4transport/R/image_bary15B.R | 4 T4transport-0.1.3/T4transport/R/package-T4transport.R | 9 T4transport-0.1.3/T4transport/R/zzz.R | 4 T4transport-0.1.3/T4transport/README.md | 17 T4transport-0.1.3/T4transport/build/partial.rdb |binary T4transport-0.1.3/T4transport/data/datalist |only T4transport-0.1.3/T4transport/inst/REFERENCES.bib | 175 +++++----- T4transport-0.1.3/T4transport/man/digit3.Rd | 8 T4transport-0.1.3/T4transport/man/digits.Rd | 10 T4transport-0.1.3/T4transport/man/ecdfbary.Rd | 8 T4transport-0.1.3/T4transport/man/ecdfmed.Rd | 8 T4transport-0.1.3/T4transport/man/fbary14C.Rd |only T4transport-0.1.3/T4transport/man/fbary15B.Rd |only T4transport-0.1.3/T4transport/man/figures/my_logo.png |only T4transport-0.1.3/T4transport/man/gaussbary1d.Rd | 10 T4transport-0.1.3/T4transport/man/gaussbarypd.Rd | 12 T4transport-0.1.3/T4transport/man/gaussmed1d.Rd | 9 T4transport-0.1.3/T4transport/man/gaussmedpd.Rd | 9 T4transport-0.1.3/T4transport/man/gaussvis2d.Rd | 6 T4transport-0.1.3/T4transport/man/histbary14C.Rd | 16 T4transport-0.1.3/T4transport/man/histbary15B.Rd | 14 T4transport-0.1.3/T4transport/man/imagebary14C.Rd | 14 T4transport-0.1.3/T4transport/man/imagebary15B.Rd | 14 T4transport-0.1.3/T4transport/man/ipot.Rd | 41 +- T4transport-0.1.3/T4transport/man/rbary23L.Rd |only T4transport-0.1.3/T4transport/man/sinkhorn.Rd | 41 +- T4transport-0.1.3/T4transport/man/swdist.Rd | 25 - T4transport-0.1.3/T4transport/man/wasserstein.Rd | 42 +- T4transport-0.1.3/T4transport/src/RcppExports.cpp | 74 ++-- T4transport-0.1.3/T4transport/src/elementary.cpp | 4 T4transport-0.1.3/T4transport/src/src_dist_ipot.cpp |only T4transport-0.1.3/T4transport/src/src_dist_sinkhorn.cpp |only T4transport-0.1.3/T4transport/src/src_fixed_bary_benamou.cpp |only T4transport-0.1.3/T4transport/src/src_fixed_bary_sinkhorn.cpp |only T4transport-0.1.3/T4transport/src/src_gaussian.cpp | 2 T4transport-0.1.3/T4transport/src/src_routines.cpp | 1 T4transport-0.1.3/T4transport/src/utility.cpp |only T4transport-0.1.3/T4transport/src/utility.h |only 73 files changed, 435 insertions(+), 384 deletions(-)
Title: Support for Secure API Key Management
Description: Secure handling of API keys can be difficult. This package provides
secure convenience functions for
entering / handling API keys and opening connections via inversion of control
on those keys. Works seamlessly between production and developer environments.
Author: Benjamin Nutter [ctb, aut],
Shawn Garbett [cre, ctb] ,
Hui Wu [aut],
Cole Beck [aut],
Savannah Obregon [aut]
Maintainer: Shawn Garbett <Shawn.Garbett@vumc.org>
Diff between shelter versions 0.1.1 dated 2024-11-07 and 0.2.0 dated 2025-05-29
DESCRIPTION | 13 ++++---- MD5 | 16 +++++----- NEWS | 6 +++ R/common_passwords.R | 2 - R/io.R | 2 - R/key.R | 2 - R/keyring.R | 2 - R/unlock.R | 79 +++++++++++++++++++++++++++++++++++++++++++++++++-- README.md | 46 +++++++++++++++++++++++++++-- 9 files changed, 145 insertions(+), 23 deletions(-)
Title: Infrastructure for Partially Observable Markov Decision
Processes (POMDP)
Description: Provides the infrastructure to define and analyze the solutions of Partially Observable Markov Decision Process (POMDP) models. Interfaces for various exact and approximate solution algorithms are available including value iteration, point-based value iteration and SARSOP. Hahsler and Cassandra <doi:10.32614/RJ-2024-021>.
Author: Michael Hahsler [aut, cph, cre] ,
Hossein Kamalzadeh [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between pomdp versions 1.2.4 dated 2024-12-05 and 1.2.5 dated 2025-05-29
DESCRIPTION | 14 +++--- MD5 | 36 ++++++++-------- NEWS.md | 6 ++ README.md | 70 +++++++++++++++++++-------------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 21 +++++++++ inst/README_files/policy_graph-1.png |binary inst/README_files/value_function-1.png |binary inst/doc/gridworlds.Rmd | 2 inst/doc/gridworlds.html | 69 +++++++++++++++++--------------- inst/doc/pomdp.R | 14 +++--- inst/doc/pomdp.Rmd | 2 inst/doc/pomdp.html | 28 ++++++++----- man/pomdp-package.Rd | 2 man/solve_SARSOP.Rd | 2 vignettes/gridworlds.Rmd | 2 vignettes/pomdp.Rmd | 2 vignettes/references.bib | 16 ++++++- 19 files changed, 175 insertions(+), 111 deletions(-)
Title: Goodness-of-Fit Methods for Right-Censored Data
Description: Graphical tools and goodness-of-fit tests for right-censored data:
1. Kolmogorov-Smirnov, Cramér-von Mises, and Anderson-Darling tests,
which use the empirical distribution function for complete data
and are extended for right-censored data.
2. Generalized chi-squared-type test, which is based on the squared
differences between observed and expected counts using random
cells with right-censored data.
3. A series of graphical tools such as probability or cumulative hazard
plots to guide the decision about the most suitable parametric model
for the data.
These functions share several features as they can handle both
complete and right-censored data, and they provide parameter
estimates for the distributions under study.
Author: Klaus Langohr [aut, cre] ,
Mireia Besalu [aut] ,
Matilde Francisco [aut] ,
Arnau Garcia [aut] ,
Guadalupe Gomez [aut]
Maintainer: Klaus Langohr <klaus.langohr@upc.edu>
Diff between GofCens versions 1.2.1 dated 2024-11-09 and 1.5 dated 2025-05-29
GofCens-1.2.1/GofCens/man/figures/GofCens_logo1.png |only GofCens-1.2.1/GofCens/man/print.ADcens.Rd |only GofCens-1.2.1/GofCens/man/print.CvMcens.Rd |only GofCens-1.2.1/GofCens/man/print.KScens.Rd |only GofCens-1.2.1/GofCens/man/print.chisqcens.Rd |only GofCens-1.2.1/GofCens/man/print.gofcens.Rd |only GofCens-1.5/GofCens/DESCRIPTION | 55 - GofCens-1.5/GofCens/MD5 | 87 +- GofCens-1.5/GofCens/NAMESPACE | 10 GofCens-1.5/GofCens/R/ADcens.default.R | 316 ++++++-- GofCens-1.5/GofCens/R/CvMcens.default.R | 314 ++++++-- GofCens-1.5/GofCens/R/KScens.default.R | 592 +++++++++++----- GofCens-1.5/GofCens/R/chisqcens.default.R | 446 +++++++++--- GofCens-1.5/GofCens/R/cumhazPlot.default.R | 159 +++- GofCens-1.5/GofCens/R/gofcens.default.R | 393 ++++++++-- GofCens-1.5/GofCens/R/kmPlot.default.R | 127 ++- GofCens-1.5/GofCens/R/plot.probPlot.R | 88 +- GofCens-1.5/GofCens/R/print.ADcens.R | 118 --- GofCens-1.5/GofCens/R/print.CvMcens.R | 118 --- GofCens-1.5/GofCens/R/print.KScens.R | 118 --- GofCens-1.5/GofCens/R/print.chisqcens.R | 128 --- GofCens-1.5/GofCens/R/print.cumhazPlot.R | 57 + GofCens-1.5/GofCens/R/print.gofcens.R | 124 --- GofCens-1.5/GofCens/R/print.kmPlot.R | 4 GofCens-1.5/GofCens/R/print.probPlot.R | 4 GofCens-1.5/GofCens/R/print.summary.ADcens.R |only GofCens-1.5/GofCens/R/print.summary.CvMcens.R |only GofCens-1.5/GofCens/R/print.summary.KScens.R |only GofCens-1.5/GofCens/R/print.summary.chisqcens.R |only GofCens-1.5/GofCens/R/print.summary.gofcens.R |only GofCens-1.5/GofCens/R/probPlot.default.R | 167 +++- GofCens-1.5/GofCens/R/summary.ADcens.R |only GofCens-1.5/GofCens/R/summary.CvMcens.R |only GofCens-1.5/GofCens/R/summary.KScens.R |only GofCens-1.5/GofCens/R/summary.chisqcens.R |only GofCens-1.5/GofCens/R/summary.gofcens.R |only GofCens-1.5/GofCens/README.md | 35 GofCens-1.5/GofCens/build/vignette.rds |binary GofCens-1.5/GofCens/inst/doc/Goodness_of_fit_Tests.R | 8 GofCens-1.5/GofCens/inst/doc/Goodness_of_fit_Tests.Rmd | 12 GofCens-1.5/GofCens/inst/doc/Goodness_of_fit_Tests.html | 122 --- GofCens-1.5/GofCens/man/ADcens.Rd | 37 - GofCens-1.5/GofCens/man/CvMcens.Rd | 29 GofCens-1.5/GofCens/man/GofCens-package.Rd | 33 GofCens-1.5/GofCens/man/KScens.Rd | 39 - GofCens-1.5/GofCens/man/chisqcens.Rd | 25 GofCens-1.5/GofCens/man/cumhazPlot.Rd | 10 GofCens-1.5/GofCens/man/gofcens.Rd | 38 - GofCens-1.5/GofCens/man/kmPlot.Rd | 14 GofCens-1.5/GofCens/man/methods_tests.Rd |only GofCens-1.5/GofCens/man/nba.Rd | 10 GofCens-1.5/GofCens/man/probPlot.Rd | 7 GofCens-1.5/GofCens/vignettes/Goodness_of_fit_Tests.Rmd | 12 53 files changed, 2410 insertions(+), 1446 deletions(-)
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing, manipulating
and analyzing transaction data and patterns (frequent itemsets and
association rules). Also provides C implementations of the
association mining algorithms Apriori and Eclat. Hahsler, Gruen and
Hornik (2005) <doi:10.18637/jss.v014.i15>.
Author: Michael Hahsler [aut, cre, cph] ,
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph] ,
Christian Borgelt [ctb, cph],
Ian Johnson [ctb],
Makhlouf Ledmi [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.7-10 dated 2025-04-22 and 1.7-11 dated 2025-05-29
arules-1.7-10/arules/R/AAADefs.R |only arules-1.7-10/arules/R/check_installed.R |only arules-1.7-10/arules/src/r_memcpy.h |only arules-1.7-11/arules/DESCRIPTION | 29 arules-1.7-11/arules/MD5 | 32 arules-1.7-11/arules/NEWS.md | 8 arules-1.7-11/arules/R/AAA_check_installed.R |only arules-1.7-11/arules/R/AAA_definitions.R |only arules-1.7-11/arules/R/AAA_nodots.R |only arules-1.7-11/arules/R/affinity.R |only arules-1.7-11/arules/R/dissimilarity.R | 700 ++++++--------- arules-1.7-11/arules/README.md | 21 arules-1.7-11/arules/inst/doc/arules.pdf |binary arules-1.7-11/arules/man/affinity.Rd | 2 arules-1.7-11/arules/man/dissimilarity.Rd | 18 arules-1.7-11/arules/src/matrix.c | 15 arules-1.7-11/arules/src/ptree.c | 13 arules-1.7-11/arules/src/similarity.c | 9 arules-1.7-11/arules/src/warm.c | 11 arules-1.7-11/arules/tests/testthat/test-dissimilarity.R |only arules-1.7-11/arules/tests/testthat/test-missing.R | 1 21 files changed, 384 insertions(+), 475 deletions(-)
Title: Parallel Low-Rank Approximation with Nonnegativity Constraints
Description: 'Rcpp' bindings for 'PLANC', a highly parallel
and extensible NMF/NTF (Non-negative Matrix/Tensor Factorization) library.
Wraps algorithms described in
Kannan et. al (2018) <doi:10.1109/TKDE.2017.2767592> and
Eswar et. al (2021) <doi:10.1145/3432185>.
Implements algorithms described in
Welch et al. (2019) <doi:10.1016/j.cell.2019.05.006>,
Gao et al. (2021) <doi:10.1038/s41587-021-00867-x>, and
Kriebel & Welch (2022) <doi:10.1038/s41467-022-28431-4>.
Author: Andrew Robbins [aut, cre] ,
Yichen Wang [aut],
Joshua Welch [cph] ,
Ramakrishnan Kannan [cph] ,
Conrad Sanderson [cph] ,
Blue Brain Project/EPFL [cph] ,
UT-Batelle [cph]
Maintainer: Andrew Robbins <robbiand@umich.edu>
Diff between RcppPlanc versions 2.0.11 dated 2025-05-23 and 2.0.12 dated 2025-05-29
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ inst/doc/RcppPlanc.html | 10 +++++----- src/planc/CMakeLists.txt | 4 ++-- src/rcppplanc_nmf.cpp | 3 +++ tests/testthat/test_nmf.R | 4 ++++ tools/patches/01_remove_sprintf.patch | 13 +++++++++++++ tools/patches/03_remove_abort.patch | 13 +++++++++++++ 9 files changed, 58 insertions(+), 19 deletions(-)
Title: Polyspherical Kernel Density Estimation
Description: Kernel density estimation on the polysphere, (hyper)sphere, and
circle. Includes functions for density estimation, regression estimation,
ridge estimation, bandwidth selection, kernels, samplers, and homogeneity
tests. Companion package to García-Portugués and Meilán-Vila (2024)
<doi:10.48550/arXiv.2411.04166> and García-Portugués and Meilán-Vila
(2023) <doi:10.1007/978-3-031-32729-2_4>.
Author: Eduardo Garcia-Portugues [aut, cre] ,
Andrea Meilan-Vila [ctb]
Maintainer: Eduardo Garcia-Portugues <edgarcia@est-econ.uc3m.es>
Diff between polykde versions 1.1.3 dated 2025-04-15 and 1.1.4 dated 2025-05-29
DESCRIPTION | 16 ++-- MD5 | 18 ++-- NEWS.md | 11 ++ R/data.R |only R/mise.R | 158 ++++++++++++++++++++++++++++--------------- R/utils.R | 17 ++-- data |only inst/WORDLIST | 8 ++ man/hippocampus.Rd |only tests/testthat/Rplots.pdf |only tests/testthat/tests_mise.R | 35 ++++++++- tests/testthat/tests_utils.R | 17 ++-- 12 files changed, 192 insertions(+), 88 deletions(-)
Title: Optimal Design and Statistical Power for Experimental Studies
Investigating Main, Mediation, and Moderation Effects
Description: Calculate the optimal sample size allocation that
uses the minimum resources to achieve targeted statistical
power in experiments.
Perform power analyses with and without accommodating
costs and budget. The designs cover single-level
and multilevel experiments detecting main, mediation,
and moderation effects (and some combinations).
The references for the proposed methods include:
(1) Shen, Z., & Kelcey, B. (2020).
Optimal sample allocation under unequal costs in
cluster-randomized trials.
Journal of Educational and Behavioral Statistics, 45(4): 446-474.
<doi:10.3102/1076998620912418>.
(2) Shen, Z., & Kelcey, B. (2022b). Optimal sample allocation for
three-level multisite cluster-randomized trials.
Journal of Research on Educational Effectiveness, 15 (1), 130-150.
<doi:10.1080/19345747.2021.1953200>.
(3) Shen, Z., & Kelcey, B. (2022a). Optimal sample allocation in
multisite randomized trials. The Journal of Experimental Education,
90(3), 693-711. <doi:10.108 [...truncated...]
Author: Zuchao Shen [aut, cre] ,
Benjamin Kelcey [aut]
Maintainer: Zuchao Shen <zuchao.shen@gmail.com>
Diff between odr versions 1.4.4 dated 2023-08-08 and 1.5.0 dated 2025-05-29
DESCRIPTION | 35 - MD5 | 54 +- NAMESPACE | 3 R/od.2.221.R | 79 ++- R/od.2.221m.R |only R/od.2m.111m.R |only R/od.2m.R | 805 +++++++++++++++++++++++++++------ R/od.3m.R | 1220 ++++++++++++++++++++++++++++++++++++++++++++++++++- R/od.4m.R | 1 R/power.2.221.R | 1 R/power.2m.111m.R |only R/power.2m.R | 60 +- R/power.3m.R | 8 R/power.4m.R | 2 build/vignette.rds |binary inst/doc/odr.R | 4 inst/doc/odr.Rmd | 2 inst/doc/odr.html | 26 - man/od.2.221.Rd | 23 man/od.2.221m.Rd |only man/od.2m.111.Rd | 2 man/od.2m.111m.Rd |only man/od.2m.Rd | 96 +++- man/od.3m.Rd | 98 +++- man/od.4m.Rd | 2 man/power.2m.111.Rd | 5 man/power.2m.111m.Rd |only man/power.2m.Rd | 66 +- man/power.3m.Rd | 8 man/power.4m.Rd | 2 vignettes/odr.Rmd | 2 31 files changed, 2287 insertions(+), 317 deletions(-)
Title: Regularized Bayesian Estimator for Two-Level Latent Variable
Models
Description: Implements a regularized Bayesian estimator that optimizes the estimation
of between-group coefficients for multilevel latent variable models by minimizing
mean squared error (MSE) and balancing variance and bias. The package provides more reliable
estimates in scenarios with limited data, offering a robust solution for accurate
parameter estimation in two-level latent variable models. It is designed for
researchers in psychology, education, and related fields who face challenges in
estimating between-group effects under small sample sizes and low intraclass
correlation coefficients. Dashuk et al. (2024) <doi:10.13140/RG.2.2.18148.39048>
derived the optimal regularized Bayesian estimator;
Dashuk et al. (2024) <doi:10.13140/RG.2.2.34350.01604> extended it to
the multivariate case; and Luedtke et al. (2008) <doi:10.1037/a0012869>
formalized the two-level latent variable framework.
Author: Valerii Dashuk [aut, cre],
Binayak Timilsina [aut],
Martin Hecht [aut],
Steffen Zitzmann [aut]
Maintainer: Valerii Dashuk <vadashuk@gmail.com>
Diff between MultiLevelOptimalBayes versions 0.0.1.5 dated 2025-05-27 and 0.0.1.6 dated 2025-05-29
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/mlob.R | 24 ++++++++++++++++++------ 3 files changed, 23 insertions(+), 11 deletions(-)
More information about MultiLevelOptimalBayes at CRAN
Permanent link
Title: Interactive Statistical Data Visualization
Description: An extendable toolkit for interactive data visualization and exploration.
Author: Adrian Waddell [aut],
R. Wayne Oldford [aut, cre, ths],
Zehao Xu [ctb],
Martin Gauch [ctb]
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>
Diff between loon versions 1.4.1 dated 2023-06-15 and 1.4.2 dated 2025-05-29
DESCRIPTION | 11 MD5 | 96 ++- NAMESPACE | 31 + NEWS.md | 11 R/get_facets.R | 25 + R/l_binCut.R | 2 R/l_bind.R | 4 R/l_layer.R | 2 R/l_layer_sp.R | 109 +++- R/l_linkingWarning.R | 23 R/loonFacets.R | 76 +++ R/loonGrobInstantiation.R |only R/loonGrob_l_layer_scatterplot.R | 28 + build/vignette.rds |binary inst/doc/introduction.R | 769 +++++++++++++++---------------- inst/doc/introduction.Rmd | 11 inst/doc/introduction.html | 34 - inst/doc/logicalQueries.R | 62 +- inst/doc/logicalQueries.html | 4 inst/doc/loonPlotsAndGridGraphics.R | 318 ++++++------ inst/doc/loonPlotsAndGridGraphics.html | 26 - inst/doc/savingLoonPlots.R | 202 ++++---- inst/doc/savingLoonPlots.Rmd | 18 inst/doc/savingLoonPlots.html | 20 inst/doc/teaching-example-smoothing.R | 350 +++++++------- inst/doc/teaching-example-smoothing.html | 8 man/get_facets.Rd |only man/l_binCut.Rd | 2 man/l_bind_canvas.Rd | 2 man/l_bind_item.Rd | 2 man/l_getDeprecatedLinkedVar.Rd |only man/l_glyph_add.default.Rd | 2 man/l_glyph_add_image.Rd | 2 man/l_glyph_add_pointrange.Rd | 2 man/l_glyph_add_polygon.Rd | 2 man/l_glyph_add_serialaxes.Rd | 2 man/l_glyph_add_text.Rd | 2 man/l_glyph_delete.Rd | 2 man/l_glyph_getLabel.Rd | 2 man/l_glyph_getType.Rd | 2 man/l_glyph_ids.Rd | 2 man/l_glyph_relabel.Rd | 2 man/l_layer_line.Rd | 2 man/l_primitiveGlyphs.Rd | 2 man/loon.Rd | 2 man/loonFacets.Rd |only man/loonGlyphGrob.Rd |only man/loonGrobInstantiation.Rd |only man/spAsList.Rd |only man/spunlist.Rd |only tests/testthat/test_loonGrob.R | 53 +- vignettes/introduction.Rmd | 11 vignettes/savingLoonPlots.Rmd | 18 53 files changed, 1329 insertions(+), 1027 deletions(-)
Title: Download and Process Public Domain Works from Project Gutenberg
Description: Download and process public domain works in the Project
Gutenberg collection <https://www.gutenberg.org/>. Includes metadata
for all Project Gutenberg works, so that they can be searched and
retrieved.
Author: Jon Harmon [aut, cre] ,
Myfanwy Johnston [aut],
Jordan Bradford [aut] ,
David Robinson [aut, cph]
Maintainer: Jon Harmon <jonthegeek@gmail.com>
Diff between gutenbergr versions 0.2.4 dated 2023-11-12 and 0.3.0 dated 2025-05-29
gutenbergr-0.2.4/gutenbergr/inst/doc/intro.R |only gutenbergr-0.2.4/gutenbergr/inst/doc/intro.Rmd |only gutenbergr-0.2.4/gutenbergr/inst/doc/intro.html |only gutenbergr-0.2.4/gutenbergr/inst/extdata |only gutenbergr-0.2.4/gutenbergr/man/read_zip_url.Rd |only gutenbergr-0.2.4/gutenbergr/tests/testthat/test-download.R |only gutenbergr-0.2.4/gutenbergr/tests/testthat/test-metadata.R |only gutenbergr-0.2.4/gutenbergr/tests/testthat/test-mock.R |only gutenbergr-0.2.4/gutenbergr/vignettes/intro.Rmd |only gutenbergr-0.3.0/gutenbergr/DESCRIPTION | 44 gutenbergr-0.3.0/gutenbergr/MD5 | 97 +- gutenbergr-0.3.0/gutenbergr/NAMESPACE | 19 gutenbergr-0.3.0/gutenbergr/NEWS.md |only gutenbergr-0.3.0/gutenbergr/R/data.R | 394 ++++---- gutenbergr-0.3.0/gutenbergr/R/globals.R | 32 gutenbergr-0.3.0/gutenbergr/R/gutenberg_download.R | 448 +++------- gutenbergr-0.3.0/gutenbergr/R/gutenberg_mirrors.R |only gutenbergr-0.3.0/gutenbergr/R/gutenberg_strip.R |only gutenbergr-0.3.0/gutenbergr/R/gutenberg_works.R | 244 ++--- gutenbergr-0.3.0/gutenbergr/R/gutenbergr-package.R | 18 gutenbergr-0.3.0/gutenbergr/R/utils.R | 129 +- gutenbergr-0.3.0/gutenbergr/README.md |only gutenbergr-0.3.0/gutenbergr/build/vignette.rds |binary gutenbergr-0.3.0/gutenbergr/data/gutenberg_authors.rda |binary gutenbergr-0.3.0/gutenbergr/data/gutenberg_languages.rda |binary gutenbergr-0.3.0/gutenbergr/data/gutenberg_metadata.rda |binary gutenbergr-0.3.0/gutenbergr/data/gutenberg_subjects.rda |binary gutenbergr-0.3.0/gutenbergr/data/sample_books.rda |only gutenbergr-0.3.0/gutenbergr/inst/doc/gutenbergr.R |only gutenbergr-0.3.0/gutenbergr/inst/doc/gutenbergr.Rmd |only gutenbergr-0.3.0/gutenbergr/inst/doc/gutenbergr.html |only gutenbergr-0.3.0/gutenbergr/man/discard_end_while.Rd |only gutenbergr-0.3.0/gutenbergr/man/discard_start_while.Rd |only gutenbergr-0.3.0/gutenbergr/man/dl_and_read.Rd |only gutenbergr-0.3.0/gutenbergr/man/flatten_gutenberg_id.Rd |only gutenbergr-0.3.0/gutenbergr/man/gutenberg_add_metadata.Rd |only gutenbergr-0.3.0/gutenbergr/man/gutenberg_authors.Rd | 20 gutenbergr-0.3.0/gutenbergr/man/gutenberg_download.Rd | 73 - gutenbergr-0.3.0/gutenbergr/man/gutenberg_get_all_mirrors.Rd |only gutenbergr-0.3.0/gutenbergr/man/gutenberg_get_mirror.Rd | 4 gutenbergr-0.3.0/gutenbergr/man/gutenberg_languages.Rd | 10 gutenbergr-0.3.0/gutenbergr/man/gutenberg_metadata.Rd | 166 +-- gutenbergr-0.3.0/gutenbergr/man/gutenberg_path_from_id.Rd |only gutenbergr-0.3.0/gutenbergr/man/gutenberg_strip.Rd | 8 gutenbergr-0.3.0/gutenbergr/man/gutenberg_subjects.Rd | 20 gutenbergr-0.3.0/gutenbergr/man/gutenberg_url.Rd |only gutenbergr-0.3.0/gutenbergr/man/gutenberg_works.Rd | 20 gutenbergr-0.3.0/gutenbergr/man/gutenbergr-package.Rd | 60 - gutenbergr-0.3.0/gutenbergr/man/is_working_gutenberg_mirror.Rd |only gutenbergr-0.3.0/gutenbergr/man/keep_while.Rd |only gutenbergr-0.3.0/gutenbergr/man/read_next.Rd |only gutenbergr-0.3.0/gutenbergr/man/read_url.Rd |only gutenbergr-0.3.0/gutenbergr/man/sample_books.Rd |only gutenbergr-0.3.0/gutenbergr/man/try_gutenberg_download.Rd |only gutenbergr-0.3.0/gutenbergr/tests/testthat.R | 8 gutenbergr-0.3.0/gutenbergr/tests/testthat/fixtures |only gutenbergr-0.3.0/gutenbergr/tests/testthat/helper-mocks.R |only gutenbergr-0.3.0/gutenbergr/tests/testthat/test-data.R |only gutenbergr-0.3.0/gutenbergr/tests/testthat/test-gutenberg_download.R |only gutenbergr-0.3.0/gutenbergr/tests/testthat/test-gutenberg_mirrors.R |only gutenbergr-0.3.0/gutenbergr/tests/testthat/test-gutenberg_strip.R |only gutenbergr-0.3.0/gutenbergr/tests/testthat/test-gutenberg_works.R |only gutenbergr-0.3.0/gutenbergr/tests/testthat/test-utils.R | 100 +- gutenbergr-0.3.0/gutenbergr/vignettes/gutenbergr.Rmd |only 64 files changed, 925 insertions(+), 989 deletions(-)
Title: Abstractions for Promise-Based Asynchronous Programming
Description: Provides fundamental abstractions for doing asynchronous
programming in R using promises. Asynchronous programming is useful
for allowing a single R process to orchestrate multiple tasks in the
background while also attending to something else. Semantics are
similar to 'JavaScript' promises, but with a syntax that is idiomatic
R.
Author: Joe Cheng [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Joe Cheng <joe@posit.co>
Diff between promises versions 1.3.2 dated 2024-11-27 and 1.3.3 dated 2025-05-29
DESCRIPTION | 16 LICENSE | 5 MD5 | 90 ++--- NEWS.md | 6 R/domains.R | 71 ++-- R/first_type.R | 6 R/function_type.R | 6 R/future_promise.R | 115 ++++--- R/is_something.R | 32 - R/pipe.R | 2 R/promise.R | 168 ++++++---- R/then.R | 12 R/utils.R | 12 README.md | 2 build/vignette.rds |binary inst/WORDLIST | 5 inst/doc/promises_02_intro.html | 96 ++--- inst/doc/promises_03_overview.html | 232 +++++++------- inst/doc/promises_04_futures.R |only inst/doc/promises_04_futures.Rmd | 22 + inst/doc/promises_04_futures.html | 52 ++- inst/doc/promises_05_future_promise.html | 32 - inst/doc/promises_06_shiny.R |only inst/doc/promises_06_shiny.Rmd | 11 inst/doc/promises_06_shiny.html | 340 ++++++++++---------- inst/doc/promises_07_combining.html | 168 +++++----- inst/doc/promises_08_casestudy.Rmd | 20 - inst/doc/promises_08_casestudy.html | 504 ++++++++++++++++--------------- man/figures/lifecycle-deprecated.svg | 22 + man/figures/lifecycle-experimental.svg | 22 + man/figures/lifecycle-stable.svg | 30 + man/figures/lifecycle-superseded.svg | 22 + man/future_promise.Rd | 16 man/promises-package.Rd | 2 tests/spelling.R | 9 tests/testthat.R | 8 tests/testthat/common.R | 34 +- tests/testthat/test-aplus-2-2.R | 38 +- tests/testthat/test-combining.R | 18 - tests/testthat/test-cpp.R | 13 tests/testthat/test-domains.R | 150 +++++---- tests/testthat/test-methods.R | 76 ++-- tests/testthat/test-visibility.R | 162 +++++---- tests/testthat/test-zzz-future_promise.R | 66 ++-- vignettes/promises_04_futures.Rmd | 22 + vignettes/promises_06_shiny.Rmd | 11 vignettes/promises_08_casestudy.Rmd | 20 - 47 files changed, 1561 insertions(+), 1205 deletions(-)
Title: Data Used to Illustrate 'Loon' Functionality
Description: Data used as examples in the 'loon' package.
Author: R. Wayne Oldford [aut, cre],
Adrian Waddell [aut]
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>
Diff between loon.data versions 0.1.3 dated 2021-05-13 and 0.1.4 dated 2025-05-29
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/SAheart.R | 4 ++-- R/alaska_forest.R | 1 - man/SAheart.Rd | 4 ++-- 6 files changed, 17 insertions(+), 14 deletions(-)
Title: Multivariate Random Forest with Compositional Responses
Description: Non linear regression with compositional responses and Euclidean predictors is performed. The compositional data are first transformed using the additive log-ratio transformation, and then the multivariate random forest of Rahman R., Otridge J. and Pal R. (2017), <doi:10.1093/bioinformatics/btw765>, is applied.
Author: Michail Tsagris [aut, cre],
Christos Adam [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between CompositionalRF versions 1.1 dated 2025-05-07 and 1.2 dated 2025-05-29
DESCRIPTION | 13 +- MD5 | 24 +++- NAMESPACE | 8 - R/RcppExports.R | 8 + R/alfa.comp.rf.R |only R/comp.rf.R | 24 ---- R/cv.alfacomprf.R |only R/mrf.R |only man/CompositionalRF-package.Rd | 4 man/alfa.comp.rf.Rd |only man/comp.rf.Rd | 45 +++++---- man/cv.alfacomprf.Rd |only man/cv.comprf.Rd | 14 +- man/mrf.Rd |only src/RcppExports.cpp | 36 ++++--- src/mrf.cpp | 199 +++++++++++++++++++++++++++++------------ 16 files changed, 239 insertions(+), 136 deletions(-)
More information about CompositionalRF at CRAN
Permanent link
Title: Client for World Banks's 'Indicators' and 'Poverty and
Inequality Platform (PIP)' APIs
Description: Download and search data from the 'World Bank Indicators
API', which provides access to nearly 16,000 time series indicators.
See
<https://datahelpdesk.worldbank.org/knowledgebase/articles/889392-about-the-indicators-api-documentation>
for further details about the API.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between worldbank versions 0.5.0 dated 2025-01-27 and 0.6.0 dated 2025-05-29
DESCRIPTION | 9 ++-- MD5 | 16 ++++---- NAMESPACE | 1 NEWS.md | 4 ++ R/fone.R | 6 ++- R/indicators.R | 76 ++++++++++++++++++++--------------------- R/pip.R | 81 ++++++++++++++++++++++++-------------------- README.md | 4 +- man/wb_country_indicator.Rd | 9 ++++ 9 files changed, 116 insertions(+), 90 deletions(-)
Title: Personalised Synthetic Controls
Description: Allows the comparison of data cohorts (DC) against a Counter Factual Model (CFM) and measures the difference in terms of an efficacy parameter. Allows the application of Personalised Synthetic Controls.
Author: Richard Jackson [cre, aut, cph]
Maintainer: Richard Jackson <richJ23@liverpool.ac.uk>
Diff between psc versions 1.2.0 dated 2025-04-10 and 1.3.0 dated 2025-05-29
DESCRIPTION | 17 - MD5 | 106 +++++--- NAMESPACE | 15 + NEWS.md | 14 + R/cfmDataSumm.R |only R/cfmDataVis.R |only R/dataComb.R | 3 R/dataComb.flexsurvreg.R | 56 ++-- R/dataComb.glm.R | 47 +-- R/dataComb.pscCFM.R |only R/data_match.R | 44 ++- R/e4_data.R |only R/facVis.R |only R/facVisComp.R |only R/gemCFM.R |only R/initParm.glm.R | 3 R/initParm.pscCFM.R |only R/linPred.R | 9 R/modelExtract.flexsurvreg.R | 24 + R/modelExtract.glm.R | 21 + R/numVis.R |only R/numVisComp.R |only R/print.quiet_gglist.R |only R/print.quiet_gtsumm.R |only R/print.quiet_list.R |only R/pscCFM.R |only R/pscEst.pscCFM.R |only R/pscSumm.R | 17 - R/pscfit.R | 15 - R/summary.R | 9 R/surv.mod.R | 2 R/surv_fpm.R | 7 R/visComp.R |only README.md | 10 build/vignette.rds |binary data/e4_data.rda |only data/gemCFM.rda |only inst/doc/psc-vignette.R | 79 ------ inst/doc/psc-vignette.Rmd | 208 ++--------------- inst/doc/psc-vignette.html | 483 +++++----------------------------------- man/cfmDataSumm.Rd |only man/cfmDataVis.Rd |only man/dataComb.Rd | 4 man/dataComb.flexsurvreg.Rd | 4 man/dataComb.glm.Rd | 4 man/dataComb.pscCFM.Rd |only man/data_match.Rd | 8 man/e4_data.Rd |only man/facVis.Rd |only man/facVisComp.Rd |only man/gemCFM.Rd |only man/initParm.glm.Rd | 4 man/initParm.pscCFM.Rd |only man/linPred.Rd | 8 man/modelExtract.flexsurvreg.Rd | 5 man/modelExtract.glm.Rd | 5 man/numVis.Rd |only man/numVisComp.Rd |only man/print.quiet_gglist.Rd |only man/print.quiet_gtsumm.Rd |only man/print.quiet_list.Rd |only man/psc-package.Rd | 1 man/pscCFM.Rd |only man/pscEst.pscCFM.Rd |only man/pscSumm.Rd | 8 man/pscfit.Rd | 8 man/summary.psc.Rd | 9 man/surv.mod.Rd | 2 man/surv_fpm.Rd | 8 man/visComp.Rd |only vignettes/psc-vignette.Rmd | 208 ++--------------- 71 files changed, 424 insertions(+), 1051 deletions(-)
Title: Parse Messy Geographic Coordinates
Description: Parse messy geographic coordinates from various character formats
to decimal degree numeric values. Parse coordinates into
their parts (degree, minutes, seconds); calculate hemisphere
from coordinates; pull out individually degrees,
minutes, or seconds; add and subtract degrees, minutes,
and seconds. C++ code herein originally inspired from code
written by Jeffrey D. Bogan, but then completely re-written.
Author: Scott Chamberlain [aut] ,
Alban Sagouis [aut, cre] ,
Alec L. Robitaille [ctb] ,
Maelle Salmon [ctb] ,
Hiroaki Yutani [ctb],
Jeffrey Bogan [ctb] ,
Julien Brun [rev] ,
Maria Munafo [rev] ,
rOpenSci [fnd] ,
German Centre for Integrative Biodiversity Res [...truncated...]
Maintainer: Alban Sagouis <sagouis@pm.me>
Diff between parzer versions 0.4.2 dated 2025-05-19 and 0.4.3 dated 2025-05-29
parzer-0.4.2/parzer/README.md |only parzer-0.4.3/parzer/DESCRIPTION | 6 +++--- parzer-0.4.3/parzer/MD5 | 17 ++++++++--------- parzer-0.4.3/parzer/NEWS.md | 8 ++++++++ parzer-0.4.3/parzer/R/parse_lat.R | 4 ++-- parzer-0.4.3/parzer/R/parse_lon.R | 4 ++-- parzer-0.4.3/parzer/inst/doc/parzer.html | 4 ++-- parzer-0.4.3/parzer/inst/doc/use_cases.html | 16 ++++++++-------- parzer-0.4.3/parzer/man/parse_lat.Rd | 4 ++-- parzer-0.4.3/parzer/man/parse_lon.Rd | 4 ++-- 10 files changed, 37 insertions(+), 30 deletions(-)
Title: 'date' C++ Header Library for Date and Time Functionality
Description: A header-only C++ library is provided with support
for dates, time zones, ISO weeks, Julian dates, and Islamic dates.
'date' offers extensive date and time functionality for the C++11,
C++14 and C++17 standards and was written by Howard Hinnant and released
under the MIT license. A slightly modified version has been accepted
(along with 'tz.h') as part of C++20. This package regroups all
header files from the upstream repository by Howard Hinnant so that
other R packages can use them in their C++ code. At present, few of
the types have explicit 'Rcpp' wrappers though these may be added as
needed.
Author: Dirk Eddelbuettel [aut, cre] ,
Howard Hinnant [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppDate versions 0.0.5 dated 2025-03-06 and 0.0.6 dated 2025-05-29
ChangeLog | 16 ++++++ DESCRIPTION | 11 ++-- MD5 | 12 ++-- build/partial.rdb |binary inst/NEWS.Rd | 6 ++ inst/include/date.h | 133 +++++++++++++++++++++++++++++++++++++++++++++++----- inst/include/ptz.h | 6 +- 7 files changed, 160 insertions(+), 24 deletions(-)
Title: A Grammar of Nested Data Manipulation
Description: Provides functions for manipulating nested data frames in a
list-column using 'dplyr' <https://dplyr.tidyverse.org/> syntax. Rather than
unnesting, then manipulating a data frame, 'nplyr' allows users to
manipulate each nested data frame directly. 'nplyr' is a wrapper for 'dplyr'
functions that provide tools for common data manipulation steps: filtering
rows, selecting columns, summarising grouped data, among others.
Author: Mark Rieke [aut],
Bolivar Aponte Rolon [cre] ,
Joran Elias [ctb]
Maintainer: Bolivar Aponte Rolon <bolaponte@pm.me>
Diff between nplyr versions 0.2.0 dated 2023-02-14 and 0.3.0 dated 2025-05-29
DESCRIPTION | 33 LICENSE | 4 MD5 | 150 ++-- NAMESPACE | 148 ++-- NEWS.md | 64 + R/assertions.R | 74 +- R/data.R | 64 - R/nest_arrange.R | 126 +-- R/nest_count-tally.R | 198 ++--- R/nest_distinct.R | 126 +-- R/nest_drop_na.R | 114 +-- R/nest_extract.R | 142 ++- R/nest_fill.R | 116 +-- R/nest_filter.R | 156 ++-- R/nest_group-by.R | 220 ++--- R/nest_join.R | 818 +++++++++++----------- R/nest_mutate.R | 248 +++--- R/nest_relocate.R | 120 +-- R/nest_rename.R | 190 ++--- R/nest_replace_na.R | 111 +-- R/nest_select.R | 128 +-- R/nest_separate.R | 145 ++- R/nest_slice.R | 518 +++++++------- R/nest_summarise.R | 186 ++--- R/nest_unite.R | 118 +-- R/utils-pipe.R |only README.md | 363 ++++----- build/vignette.rds |binary inst/doc/Use-case-for-nplyr.R | 157 ++-- inst/doc/Use-case-for-nplyr.Rmd | 257 +++--- inst/doc/Use-case-for-nplyr.html | 1146 +++++++++++++++---------------- man/job_survey.Rd | 50 - man/nest-filter-joins.Rd | 182 ++-- man/nest-mutate-joins.Rd | 394 +++++----- man/nest_arrange.Rd | 120 +-- man/nest_count.Rd | 122 +-- man/nest_distinct.Rd | 98 +- man/nest_drop_na.Rd | 106 +- man/nest_extract.Rd | 170 ++-- man/nest_fill.Rd | 114 +-- man/nest_filter.Rd | 152 ++-- man/nest_group_by.Rd | 144 +-- man/nest_mutate.Rd | 208 ++--- man/nest_nest_join.Rd | 178 ++-- man/nest_relocate.Rd | 96 +- man/nest_rename.Rd | 130 +-- man/nest_replace_na.Rd | 105 +- man/nest_select.Rd | 118 +-- man/nest_separate.Rd | 215 ++--- man/nest_slice.Rd | 274 +++---- man/nest_summarise.Rd | 180 ++-- man/nest_unite.Rd | 146 +-- man/personal_survey.Rd | 50 - man/pipe.Rd |only tests/testthat.R | 9 tests/testthat/data/gm_codes.csv | 376 +++++----- tests/testthat/nplyr-reusable.R | 54 - tests/testthat/test-grouped-operations.R | 448 ++++++------ tests/testthat/test-nest-arrange.R | 90 +- tests/testthat/test-nest-count.R | 216 ++--- tests/testthat/test-nest-distinct.R | 72 - tests/testthat/test-nest-drop-na.R | 56 - tests/testthat/test-nest-extract.R | 64 - tests/testthat/test-nest-fill.R | 52 - tests/testthat/test-nest-filter.R | 60 - tests/testthat/test-nest-group-by.R | 130 +-- tests/testthat/test-nest-join.R | 450 ++++++------ tests/testthat/test-nest-mutate.R | 116 +-- tests/testthat/test-nest-relocate.R | 78 +- tests/testthat/test-nest-rename.R | 100 +- tests/testthat/test-nest-replace-na.R | 60 - tests/testthat/test-nest-select.R | 56 - tests/testthat/test-nest-separate.R | 56 - tests/testthat/test-nest-slice.R | 372 +++++----- tests/testthat/test-nest-summarise.R | 44 - tests/testthat/test-nest-unite.R | 50 - vignettes/Use-case-for-nplyr.Rmd | 257 +++--- 77 files changed, 6474 insertions(+), 6384 deletions(-)
Title: Goodness of Fit Tests Based on Empirical Distribution Functions
Description: Routines that allow the user to run goodness of fit tests based on empirical distribution functions for formal model evaluation in a general likelihood model. In addition, functions are provided to test if a sample follows Normal or Gamma distributions, validate the normality assumptions in a linear model, and examine the appropriateness of a Gamma distribution in generalized linear models with various link functions. Michael Arthur Stephens (1976) <http://www.jstor.org/stable/2958206>.
Author: Richard Lockhart [aut],
Payman Nickchi [aut, cre]
Maintainer: Payman Nickchi <payman.nickchi@gmail.com>
Diff between gofedf versions 0.1.0 dated 2023-10-01 and 1.0.0 dated 2025-05-29
gofedf-0.1.0/gofedf/man/applyGamma.Rd |only gofedf-0.1.0/gofedf/man/applyLMNormal.Rd |only gofedf-0.1.0/gofedf/man/expMLE.Rd |only gofedf-0.1.0/gofedf/man/expPIT.Rd |only gofedf-0.1.0/gofedf/man/expScore.Rd |only gofedf-0.1.0/gofedf/man/gammaFisherByHessian.Rd |only gofedf-0.1.0/gofedf/man/gammaMLE.Rd |only gofedf-0.1.0/gofedf/man/gammaPIT.Rd |only gofedf-0.1.0/gofedf/man/gammaScore.Rd |only gofedf-0.1.0/gofedf/man/glmMLE.Rd |only gofedf-0.1.0/gofedf/man/glmScorePIT.Rd |only gofedf-0.1.0/gofedf/man/inversegaussianMLE.Rd |only gofedf-0.1.0/gofedf/man/inversegaussianPIT.Rd |only gofedf-0.1.0/gofedf/man/inversegaussianScore.Rd |only gofedf-0.1.0/gofedf/man/lmFisherByHessian.Rd |only gofedf-0.1.0/gofedf/man/lmMLE.Rd |only gofedf-0.1.0/gofedf/man/lmPIT.Rd |only gofedf-0.1.0/gofedf/man/lmScore.Rd |only gofedf-0.1.0/gofedf/man/normalFisherByHessian.Rd |only gofedf-0.1.0/gofedf/man/normalMLE.Rd |only gofedf-0.1.0/gofedf/man/normalPIT.Rd |only gofedf-0.1.0/gofedf/man/normalScore.Rd |only gofedf-1.0.0/gofedf/DESCRIPTION | 14 gofedf-1.0.0/gofedf/MD5 | 89 ++--- gofedf-1.0.0/gofedf/NAMESPACE | 26 - gofedf-1.0.0/gofedf/R/applyExponential.R | 8 gofedf-1.0.0/gofedf/R/applyGLMGamma.R | 64 +-- gofedf-1.0.0/gofedf/R/applyGamma.R | 55 +-- gofedf-1.0.0/gofedf/R/applyLMNormal.R | 54 +-- gofedf-1.0.0/gofedf/R/applyNormal.R | 49 +-- gofedf-1.0.0/gofedf/R/testExponential.R | 213 ++++++++++--- gofedf-1.0.0/gofedf/R/testGLMGamma.R | 286 +++++++++++++---- gofedf-1.0.0/gofedf/R/testGamma.R | 234 +++++++++++--- gofedf-1.0.0/gofedf/R/testLMNormal.R | 345 +++++++++++++-------- gofedf-1.0.0/gofedf/R/testNormal.R | 197 +++++++++--- gofedf-1.0.0/gofedf/R/testYourModel.R | 314 +++++++++++++------ gofedf-1.0.0/gofedf/R/utils_exp.R | 8 gofedf-1.0.0/gofedf/R/utils_gamma.R | 260 ++++++++-------- gofedf-1.0.0/gofedf/R/utils_glmgamma.R | 12 gofedf-1.0.0/gofedf/R/utils_gof.R | 190 +++++++---- gofedf-1.0.0/gofedf/R/utils_lmnormal.R | 229 +++++++------- gofedf-1.0.0/gofedf/R/utils_normal.R | 210 ++++++------- gofedf-1.0.0/gofedf/R/utils_testYourModel.R | 10 gofedf-1.0.0/gofedf/README.md | 229 +++++++------- gofedf-1.0.0/gofedf/build/vignette.rds |binary gofedf-1.0.0/gofedf/inst/doc/gofedf-vignette.R | 19 - gofedf-1.0.0/gofedf/inst/doc/gofedf-vignette.Rmd | 37 -- gofedf-1.0.0/gofedf/inst/doc/gofedf-vignette.html | 353 ++++++++++------------ gofedf-1.0.0/gofedf/man/IGMLE.Rd |only gofedf-1.0.0/gofedf/man/IGPIT.Rd |only gofedf-1.0.0/gofedf/man/IGScore.Rd |only gofedf-1.0.0/gofedf/man/testExponential.Rd | 48 ++ gofedf-1.0.0/gofedf/man/testGLMGamma.Rd | 99 ++++-- gofedf-1.0.0/gofedf/man/testGamma.Rd | 59 ++- gofedf-1.0.0/gofedf/man/testLMNormal.Rd | 83 +++-- gofedf-1.0.0/gofedf/man/testNormal.Rd | 54 ++- gofedf-1.0.0/gofedf/man/testYourModel.Rd | 94 +++-- gofedf-1.0.0/gofedf/vignettes/gofedf-vignette.Rmd | 37 -- 58 files changed, 2447 insertions(+), 1532 deletions(-)
Title: Quality Control and Analysis of Massachusetts Water Quality Data
Description: Methods for quality control and exploratory analysis of surface
water quality data collected in Massachusetts, USA. Functions are developed
to facilitate data formatting for the Water Quality Exchange Network
<https://www.epa.gov/waterdata/water-quality-data-upload-wqx> and reporting
of data quality objectives to state agencies. Quality control methods are
from Massachusetts Department of Environmental Protection (2020)
<https://www.mass.gov/orgs/massachusetts-department-of-environmental-protection>.
Author: Marcus Beck [aut, cre] ,
Jill Carr [aut],
Ben Wetherill [aut]
Maintainer: Marcus Beck <mbeck@tbep.org>
Diff between MassWateR versions 2.1.5 dated 2024-10-20 and 2.2.0 dated 2025-05-29
DESCRIPTION | 12 - MD5 | 190 ++++++++++++----------- NAMESPACE | 4 NEWS.md | 17 ++ R/anlzMWRdate.R | 15 - R/anlzMWRmap.R | 48 +++-- R/anlzMWRoutlier.R | 11 - R/anlzMWRoutlierall.R | 31 +++ R/anlzMWRseason.R | 7 R/anlzMWRsite.R | 7 R/checkMWRacc.R | 2 R/checkMWRcens.R |only R/checkMWRresults.R | 12 - R/checkMWRsites.R | 10 - R/formMWRcens.R |only R/globalVariables.R | 4 R/qcMWRcom.R | 69 +++++++- R/qcMWRreview.R | 62 ++++++- R/readMWRcens.R |only R/readMWRresultsview.R | 7 R/tabMWRcom.R | 35 +++- R/tabMWRwqx.R | 7 R/utilMWRinput.R | 56 +++++- R/utilMWRinputcheck.R | 9 - R/utilMWRsheet.R |only README.md | 2 inst/extdata/ExampleCensored.xlsx |only inst/extdata/MassWateR_Censored_Template.xlsx |only inst/extdata/MassWateR_DQOAccuracy_Template.xlsx |binary inst/extdata/MassWateR_DQOFreqComp_Template.xlsx |binary inst/extdata/MassWateR_Results_Template.xlsx |binary inst/extdata/MassWateR_WQXMeta_Template.xlsx |binary man/anlzMWRdate.Rd | 3 man/anlzMWRmap.Rd | 3 man/anlzMWRoutlier.Rd | 3 man/anlzMWRoutlierall.Rd | 10 - man/anlzMWRseason.Rd | 3 man/anlzMWRsite.Rd | 3 man/checkMWRcens.Rd |only man/formMWRcens.Rd |only man/qcMWRcom.Rd | 28 ++- man/qcMWRreview.Rd | 22 ++ man/readMWRacc.Rd | 60 +++---- man/readMWRcens.Rd |only man/readMWRfrecom.Rd | 62 +++---- man/readMWRresultsview.Rd | 2 man/readMWRsites.Rd | 56 +++--- man/tabMWRcom.Rd | 17 +- man/tabMWRwqx.Rd | 3 man/utilMWRfiltersurface.Rd | 60 +++---- man/utilMWRinput.Rd | 30 ++- man/utilMWRinputcheck.Rd | 5 man/utilMWRoutlier.Rd | 52 +++--- man/utilMWRsheet.Rd |only man/utilMWRsumfun.Rd | 88 +++++----- man/utilMWRsummary.Rd | 112 ++++++------- man/utilMWRvaluerange.Rd | 62 +++---- tests/testthat.R | 8 tests/testthat/helper-data.R | 69 ++++---- tests/testthat/test-anlzMWRdate.R | 18 +- tests/testthat/test-anlzMWRmap.R | 20 +- tests/testthat/test-anlzMWRoutlier.R | 14 - tests/testthat/test-anlzMWRoutlierall.R | 4 tests/testthat/test-anlzMWRseason.R | 14 - tests/testthat/test-anlzMWRsite.R | 10 - tests/testthat/test-checkMWRacc.R | 28 +-- tests/testthat/test-checkMWRcens.R |only tests/testthat/test-checkMWRfrecom.R | 12 - tests/testthat/test-checkMWRresults.R | 48 ++--- tests/testthat/test-checkMWRsites.R | 14 - tests/testthat/test-checkMWRwqx.R | 10 - tests/testthat/test-formMWRacc.R | 2 tests/testthat/test-formMWRcens.R |only tests/testthat/test-formMWRfrecom.R | 2 tests/testthat/test-formMWRresults.R | 12 - tests/testthat/test-formMWRwqx.R | 2 tests/testthat/test-qcMWRacc.R | 40 ++-- tests/testthat/test-qcMWRcom.R | 31 ++- tests/testthat/test-qcMWRfre.R | 14 - tests/testthat/test-qcMWRreview.R | 8 tests/testthat/test-readMWRacc.R | 2 tests/testthat/test-readMWRcens.R |only tests/testthat/test-readMWRfrecom.R | 2 tests/testthat/test-readMWRresults.R | 4 tests/testthat/test-readMWRresultsview.R | 6 tests/testthat/test-readMWRsites.R | 2 tests/testthat/test-readMWRwqx.R | 6 tests/testthat/test-tabMWRacc.R | 28 +-- tests/testthat/test-tabMWRcom.R | 7 tests/testthat/test-tabMWRfre.R | 6 tests/testthat/test-tabMWRwqx.R | 25 +-- tests/testthat/test-utilMWRfilter.R | 20 +- tests/testthat/test-utilMWRfre.R | 14 - tests/testthat/test-utilMWRinput.R | 15 + tests/testthat/test-utilMWRinputcheck.R | 4 tests/testthat/test-utilMWRlimits.R | 14 - tests/testthat/test-utilMWRsheet.R |only tests/testthat/test-utilMWRsumfun.R | 10 - tests/testthat/test-utilMWRsummary.R | 22 +- tests/testthat/test-utilMWRthresh.R | 20 +- tests/testthat/test-utilMWRtitle.R | 4 tests/testthat/test-utilMWRvaluerange.R | 10 - tests/testthat/test-utilMWRyscale.R | 10 - 103 files changed, 1133 insertions(+), 779 deletions(-)
Title: Generating Multi-Omics Datasets for Testing and Benchmarking
Description: Provides tools to simulate multi-omics datasets with predefined signal structures. The generated data can be used for testing, validating, and benchmarking integrative analysis methods such as factor models and clustering approaches. This version includes enhanced signal customization, visualization tools (scatter, histogram, 3D), MOFA-based analysis pipelines, PowerPoint export, and statistical profiling of datasets. Designed for both method development and teaching, SUMO supports real and synthetic data pipelines with interpretable outputs. Tini, Giulia, et al (2019) <doi:10.1093/bib/bbx167>.
Author: Bernard Isekah Osang'ir [aut, cre] ,
Ziv Shkedy [ctb],
Surya Gupta [ctb],
Juergen Claesen [ctb]
Maintainer: Bernard Isekah Osang'ir <Bernard.Osangir@sckcen.be>
Diff between SUMO versions 0.2.0 dated 2025-04-13 and 1.2.0 dated 2025-05-29
SUMO-0.2.0/SUMO/R/OmixCraftHD.R |only SUMO-0.2.0/SUMO/man/OmixCraftHD.Rd |only SUMO-0.2.0/SUMO/tests/testthat/Rplots.pdf |only SUMO-0.2.0/SUMO/tests/testthat/test-OmixCraftHD.R |only SUMO-1.2.0/SUMO/DESCRIPTION | 26 +-- SUMO-1.2.0/SUMO/MD5 | 49 +++--- SUMO-1.2.0/SUMO/NAMESPACE | 9 + SUMO-1.2.0/SUMO/NEWS.md | 80 ++++++---- SUMO-1.2.0/SUMO/R/SUMO.R | 3 SUMO-1.2.0/SUMO/R/demo_multiomics_analysis.R | 71 ++++---- SUMO-1.2.0/SUMO/R/divide_samples.R | 2 SUMO-1.2.0/SUMO/R/divide_samples_alternative.R |only SUMO-1.2.0/SUMO/R/feature_selection_one.R | 3 SUMO-1.2.0/SUMO/R/plot_factor.R | 6 SUMO-1.2.0/SUMO/R/plot_simData.R | 96 ++++++++---- SUMO-1.2.0/SUMO/R/plot_weights.R | 2 SUMO-1.2.0/SUMO/R/simulateMultiOmics.R |only SUMO-1.2.0/SUMO/R/simulate_twoOmicsData.R |only SUMO-1.2.0/SUMO/man/SUMO.Rd | 3 SUMO-1.2.0/SUMO/man/demo_multiomics_analysis.Rd | 10 - SUMO-1.2.0/SUMO/man/divide_samples.Rd | 35 +++- SUMO-1.2.0/SUMO/man/plot_factor.Rd | 4 SUMO-1.2.0/SUMO/man/plot_simData.Rd | 36 ++-- SUMO-1.2.0/SUMO/man/plot_weights.Rd | 2 SUMO-1.2.0/SUMO/man/simulateMultiOmics.Rd |only SUMO-1.2.0/SUMO/man/simulate_twoOmicsData.Rd |only SUMO-1.2.0/SUMO/tests/testthat/test-plot_factor.R | 4 SUMO-1.2.0/SUMO/tests/testthat/test-plot_simData.R | 4 SUMO-1.2.0/SUMO/tests/testthat/test-plot_weights.R | 2 SUMO-1.2.0/SUMO/tests/testthat/test-simulateMultiOmics.R |only SUMO-1.2.0/SUMO/tests/testthat/test-simulate_twoOmicsData.R |only 31 files changed, 282 insertions(+), 165 deletions(-)
Title: Interpretation Tools for Partial Least Squares Regression
Description: Various kinds of plots (observations, variables, correlations, weights, regression coefficients and Variable Importance in the Projection) and aids to interpretation (coefficients, Q2, correlations, redundancies) for partial least squares regressions computed with the 'pls' package, following Tenenhaus (1998, ISBN:2-7108-0735-1).
Author: Nicolas Robette [aut, cre]
Maintainer: Nicolas Robette <nicolas.robette@uvsq.fr>
Diff between morepls versions 0.2 dated 2025-05-20 and 0.2.1 dated 2025-05-29
DESCRIPTION | 9 ++++----- MD5 | 12 +++++++----- NEWS.md | 10 +++++++++- R/plo_part.R | 27 +++++++++++++++------------ R/utils.R |only README.md | 14 +++++++++++++- inst |only man/plo_part.Rd | 7 +++++-- 8 files changed, 53 insertions(+), 26 deletions(-)
Title: Descriptive Statistical Analysis
Description: Description of statistical associations between variables : measures of local and global association between variables (phi, Cramér V, correlations, eta-squared, Goodman and Kruskal tau, permutation tests, etc.), multiple graphical representations of the associations between variables (using 'ggplot2') and weighted statistics.
Author: Nicolas Robette [aut, cre]
Maintainer: Nicolas Robette <nicolas.robette@uvsq.fr>
Diff between descriptio versions 1.4 dated 2025-05-21 and 1.4.1 dated 2025-05-29
DESCRIPTION | 6 +-- MD5 | 8 ++-- NEWS.md | 10 +++++ R/regtab.R | 102 ++++++++++++++++++++++++++++++---------------------------- inst/CITATION | 8 ++-- 5 files changed, 74 insertions(+), 60 deletions(-)
Title: Easy Access to NetCDF Files with CF Metadata Conventions
Description: Network Common Data Form ('netCDF') files are widely used for
scientific data. Library-level access in R is provided through packages
'RNetCDF' and 'ncdf4'. Package 'ncdfCF' is built on top of 'RNetCDF' and
makes the data and its attributes available as a set of R6 classes that are
informed by the Climate and Forecasting Metadata Conventions. Access to the
data uses standard R subsetting operators and common function forms.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between ncdfCF versions 0.5.0 dated 2025-04-16 and 0.6.0 dated 2025-05-29
ncdfCF-0.5.0/ncdfCF/R/CFAxisScalar.R |only ncdfCF-0.5.0/ncdfCF/man/CFAxisScalar.Rd |only ncdfCF-0.5.0/ncdfCF/vignettes/ncdfCF-datamodel-0.4.png |only ncdfCF-0.6.0/ncdfCF/DESCRIPTION | 10 ncdfCF-0.6.0/ncdfCF/MD5 | 140 ++++----- ncdfCF-0.6.0/ncdfCF/NAMESPACE | 4 ncdfCF-0.6.0/ncdfCF/NEWS.md | 12 ncdfCF-0.6.0/ncdfCF/R/AOI.R | 13 ncdfCF-0.6.0/ncdfCF/R/AOImethod.R | 34 +- ncdfCF-0.6.0/ncdfCF/R/CFArray.R | 95 +++++- ncdfCF-0.6.0/ncdfCF/R/CFAuxiliaryLongLat.R | 118 ++++--- ncdfCF-0.6.0/ncdfCF/R/CFAxis.R | 89 +++-- ncdfCF-0.6.0/ncdfCF/R/CFAxisCharacter.R | 41 ++ ncdfCF-0.6.0/ncdfCF/R/CFAxisDiscrete.R | 68 ++-- ncdfCF-0.6.0/ncdfCF/R/CFAxisLatitude.R | 48 +-- ncdfCF-0.6.0/ncdfCF/R/CFAxisLongitude.R | 48 +-- ncdfCF-0.6.0/ncdfCF/R/CFAxisNumeric.R | 137 +++++---- ncdfCF-0.6.0/ncdfCF/R/CFAxisTime.R | 130 ++++---- ncdfCF-0.6.0/ncdfCF/R/CFAxisVertical.R | 5 ncdfCF-0.6.0/ncdfCF/R/CFBounds.R | 6 ncdfCF-0.6.0/ncdfCF/R/CFDataset.R | 9 ncdfCF-0.6.0/ncdfCF/R/CFGridMapping.R | 5 ncdfCF-0.6.0/ncdfCF/R/CFLabel.R | 5 ncdfCF-0.6.0/ncdfCF/R/CFObject.R | 30 +- ncdfCF-0.6.0/ncdfCF/R/CFVariable.R | 254 +++++++---------- ncdfCF-0.6.0/ncdfCF/R/CFVariableBase.R | 241 +++++++++++++++- ncdfCF-0.6.0/ncdfCF/R/CFVariableL3b.R | 122 ++++---- ncdfCF-0.6.0/ncdfCF/R/NCObject.R | 23 + ncdfCF-0.6.0/ncdfCF/R/makeCFObjects.R | 146 +++++++-- ncdfCF-0.6.0/ncdfCF/R/ncdfCF-package.R | 7 ncdfCF-0.6.0/ncdfCF/R/readCF.R | 121 +++----- ncdfCF-0.6.0/ncdfCF/R/utils.R | 52 +++ ncdfCF-0.6.0/ncdfCF/README.md | 248 +++++++--------- ncdfCF-0.6.0/ncdfCF/TODO | 16 - ncdfCF-0.6.0/ncdfCF/build/vignette.rds |binary ncdfCF-0.6.0/ncdfCF/inst/doc/R-CF.Rmd | 159 +++++++--- ncdfCF-0.6.0/ncdfCF/inst/doc/R-CF.html | 90 +++--- ncdfCF-0.6.0/ncdfCF/inst/doc/Using_ncdfCF.R | 8 ncdfCF-0.6.0/ncdfCF/inst/doc/Using_ncdfCF.Rmd | 14 ncdfCF-0.6.0/ncdfCF/inst/doc/Using_ncdfCF.html | 251 +++++++--------- ncdfCF-0.6.0/ncdfCF/man/CFArray.Rd | 67 +++- ncdfCF-0.6.0/ncdfCF/man/CFAuxiliaryLongLat.Rd | 19 - ncdfCF-0.6.0/ncdfCF/man/CFAxis.Rd | 110 +++++-- ncdfCF-0.6.0/ncdfCF/man/CFAxisCharacter.Rd | 65 +++- ncdfCF-0.6.0/ncdfCF/man/CFAxisDiscrete.Rd | 49 ++- ncdfCF-0.6.0/ncdfCF/man/CFAxisLatitude.Rd | 17 - ncdfCF-0.6.0/ncdfCF/man/CFAxisLongitude.Rd | 17 - ncdfCF-0.6.0/ncdfCF/man/CFAxisNumeric.Rd | 82 ++++- ncdfCF-0.6.0/ncdfCF/man/CFAxisTime.Rd | 66 +++- ncdfCF-0.6.0/ncdfCF/man/CFAxisVertical.Rd | 8 ncdfCF-0.6.0/ncdfCF/man/CFBounds.Rd | 3 ncdfCF-0.6.0/ncdfCF/man/CFGridMapping.Rd | 5 ncdfCF-0.6.0/ncdfCF/man/CFLabel.Rd | 5 ncdfCF-0.6.0/ncdfCF/man/CFObject.Rd | 30 +- ncdfCF-0.6.0/ncdfCF/man/CFVariable.Rd | 141 ++++----- ncdfCF-0.6.0/ncdfCF/man/CFVariableBase.Rd | 84 +++++ ncdfCF-0.6.0/ncdfCF/man/CFVariableL3b.Rd | 27 - ncdfCF-0.6.0/ncdfCF/man/NCDimension.Rd | 1 ncdfCF-0.6.0/ncdfCF/man/NCGroup.Rd | 1 ncdfCF-0.6.0/ncdfCF/man/NCObject.Rd | 24 + ncdfCF-0.6.0/ncdfCF/man/NCUDT.Rd | 1 ncdfCF-0.6.0/ncdfCF/man/NCVariable.Rd | 1 ncdfCF-0.6.0/ncdfCF/man/aoi.Rd | 28 - ncdfCF-0.6.0/ncdfCF/man/dimnames.Rd | 1 ncdfCF-0.6.0/ncdfCF/man/makeAxis.Rd |only ncdfCF-0.6.0/ncdfCF/man/makeDiscreteAxis.Rd |only ncdfCF-0.6.0/ncdfCF/man/makeGroup.Rd | 8 ncdfCF-0.6.0/ncdfCF/man/makeLatitudeAxis.Rd | 10 ncdfCF-0.6.0/ncdfCF/man/makeLongitudeAxis.Rd | 13 ncdfCF-0.6.0/ncdfCF/man/makeTimeAxis.Rd | 8 ncdfCF-0.6.0/ncdfCF/man/ncdfCF-package.Rd | 7 ncdfCF-0.6.0/ncdfCF/vignettes/R-CF.Rmd | 159 +++++++--- ncdfCF-0.6.0/ncdfCF/vignettes/Using_ncdfCF.Rmd | 14 ncdfCF-0.6.0/ncdfCF/vignettes/ncdfCF-datamodel-0.5.png |only 74 files changed, 2430 insertions(+), 1440 deletions(-)
Title: Geometric Data Analysis
Description: Many tools for Geometric Data Analysis (Le Roux & Rouanet (2005) <doi:10.1007/1-4020-2236-0>), such as MCA variants (Specific Multiple Correspondence Analysis, Class Specific Analysis), many graphical and statistical aids to interpretation (structuring factors, concentration ellipses, inductive tests, bootstrap validation, etc.) and multiple-table analysis (Multiple Factor Analysis, between- and inter-class analysis, Principal Component Analysis and Correspondence Analysis with Instrumental Variables, etc.).
Author: Nicolas Robette [aut, cre]
Maintainer: Nicolas Robette <nicolas.robette@uvsq.fr>
Diff between GDAtools versions 2.2 dated 2025-05-20 and 2.3 dated 2025-05-29
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++------ NAMESPACE | 3 ++- NEWS.md | 15 ++++++++++++++- R/break_interaction.R |only R/ggadd_partial.R | 38 +++++++++++++++++++++++--------------- README.md | 3 ++- man/break_interaction.Rd |only man/ggadd_partial.Rd | 10 +++++----- 9 files changed, 57 insertions(+), 32 deletions(-)
Title: Linear Discriminant Function and Canonical Correlation Analysis
Description: Produces SPSS- and SAS-like output for linear discriminant
function analysis and canonical correlation analysis. The methods are described in
Manly & Alberto (2017, ISBN:9781498728966),
Rencher (2002, ISBN:0-471-41889-7), and
Tabachnik & Fidell (2019, ISBN:9780134790541).
Author: Brian P. O'Connor [aut, cre]
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between DFA.CANCOR versions 0.3.6 dated 2024-11-16 and 0.3.8 dated 2025-05-29
DESCRIPTION | 8 MD5 | 18 NAMESPACE | 24 R/DFA.R | 1618 ++++++++++++++++++++++++++--------------------------- R/GROUP.DIFFS.R | 269 +++++--- R/GROUP.PROFILES.R | 4 R/umvn.R | 20 R/utilities_boc.R | 51 - man/DFA.Rd | 5 man/GROUP.DIFFS.Rd | 154 +++-- 10 files changed, 1143 insertions(+), 1028 deletions(-)
Title: Spatial Exploration of ArcHaeological Objects in R Shiny
Description: An R 'Shiny' application dedicated to the intra-site spatial analysis of piece-plotted archaeological remains, making the two and three-dimensional spatial exploration of archaeological data as user-friendly as possible. Documentation about 'SEAHORS' is provided by the vignette included in this package and by the companion scientific paper: Royer, Discamps, Plutniak, Thomas (2023, PCI Archaeology, <doi:10.5281/zenodo.7674698>).
Author: Aurelien Royer [aut] ,
Sebastien Plutniak [cre] ,
Emmanuel Discamps [ctb] ,
Marc Thomas [ctb]
Maintainer: Sebastien Plutniak <sebastien.plutniak@posteo.net>
Diff between SEAHORS versions 1.8.0 dated 2023-06-23 and 1.9.0 dated 2025-05-29
DESCRIPTION | 26 - MD5 | 14 NAMESPACE | 5 NEWS.md | 8 R/app_server.R | 598 ++++++++++++++++++++++++++++++++++++++++- R/app_ui.R | 210 ++++++++++---- build/vignette.rds |binary inst/doc/SEAHORS-vignette.html | 72 +++- 8 files changed, 823 insertions(+), 110 deletions(-)
Title: 'REST' API Client for Accessing Data on 'WEkEO HDA V2'
Description: Provides seamless access to the WEkEO Harmonised Data Access (HDA) API, enabling
users to query, download, and process data efficiently from the HDA platform.
With 'hdar', researchers and data scientists can integrate the extensive HDA
datasets into their R workflows, enhancing their data analysis capabilities.
Comprehensive information on the API functionality and usage is available
at <https://gateway.prod.wekeo2.eu/hda-broker/docs>.
Author: Matteo Mattiuzzi [aut, cre]
Maintainer: Matteo Mattiuzzi <matteo.mattiuzzi@eea.europa.eu>
Diff between hdar versions 1.0.5 dated 2025-03-13 and 1.0.6 dated 2025-05-29
hdar-1.0.5/hdar/LICENSE |only hdar-1.0.5/hdar/vignettes/dsvsd.html |only hdar-1.0.5/hdar/vignettes/dsvsd.qmd |only hdar-1.0.5/hdar/vignettes/dsvsd_files |only hdar-1.0.6/hdar/DESCRIPTION | 13 +++--- hdar-1.0.6/hdar/MD5 | 31 ++++------------ hdar-1.0.6/hdar/NAMESPACE | 4 +- hdar-1.0.6/hdar/R/client.R | 36 ++++++------------ hdar-1.0.6/hdar/R/paginator.R | 15 +++++-- hdar-1.0.6/hdar/R/search_results.R | 58 ++++++++++++++++++++---------- hdar-1.0.6/hdar/R/utils.R | 65 ++++++++++++++++++++++++++++++++++ hdar-1.0.6/hdar/R/zzz.R |only hdar-1.0.6/hdar/README.md | 10 +++++ hdar-1.0.6/hdar/inst/doc/hdar.html | 5 +- 14 files changed, 160 insertions(+), 77 deletions(-)
Title: Extending 'gt' for Beautiful HTML Tables
Description: Provides additional functions for creating beautiful tables
with 'gt'. The functions are generally wrappers around boilerplate or
adding opinionated niche capabilities and helpers functions.
Author: Thomas Mock [aut, cre, cph],
Daniel D. Sjoberg [ctb]
Maintainer: Thomas Mock <j.thomasmock@gmail.com>
Diff between gtExtras versions 0.5.0 dated 2023-09-15 and 0.6.0 dated 2025-05-29
gtExtras-0.5.0/gtExtras/man/gt_fa_column.Rd |only gtExtras-0.5.0/gtExtras/man/gt_fa_repeats.Rd |only gtExtras-0.6.0/gtExtras/DESCRIPTION | 18 gtExtras-0.6.0/gtExtras/MD5 | 134 +- gtExtras-0.6.0/gtExtras/NAMESPACE | 3 gtExtras-0.6.0/gtExtras/NEWS.md | 42 gtExtras-0.6.0/gtExtras/R/fontawesome-icons.R | 465 +++++----- gtExtras-0.6.0/gtExtras/R/gt-bar-html.R | 197 ++-- gtExtras-0.6.0/gtExtras/R/gtExtras-package.R | 36 gtExtras-0.6.0/gtExtras/R/gt_pct_bar.R | 51 - gtExtras-0.6.0/gtExtras/R/gt_plt_dist.R | 64 + gtExtras-0.6.0/gtExtras/R/gt_plt_sparkline.R | 113 +- gtExtras-0.6.0/gtExtras/R/gt_summary_table.R | 178 ++- gtExtras-0.6.0/gtExtras/R/gt_theme_538.R | 29 gtExtras-0.6.0/gtExtras/R/gt_theme_dark.R | 5 gtExtras-0.6.0/gtExtras/R/gt_theme_dot_matrix.R | 24 gtExtras-0.6.0/gtExtras/R/gt_theme_nytimes.R | 5 gtExtras-0.6.0/gtExtras/R/gt_theme_pff.R | 5 gtExtras-0.6.0/gtExtras/R/gtsave_extra.R | 25 gtExtras-0.6.0/gtExtras/R/html-helpers.R | 56 - gtExtras-0.6.0/gtExtras/R/two-column-layouts.R | 77 + gtExtras-0.6.0/gtExtras/man/add_text_img.Rd | 17 gtExtras-0.6.0/gtExtras/man/fa_icon_repeat.Rd | 4 gtExtras-0.6.0/gtExtras/man/fmt_pad_num.Rd | 4 gtExtras-0.6.0/gtExtras/man/fmt_pct_extra.Rd | 4 gtExtras-0.6.0/gtExtras/man/fmt_symbol_first.Rd | 4 gtExtras-0.6.0/gtExtras/man/generate_df.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_add_divider.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_badge.Rd | 14 gtExtras-0.6.0/gtExtras/man/gt_double_table.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_duplicate_column.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_fa_rank_change.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_fa_rating.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_highlight_cols.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_highlight_rows.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_img_border.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_img_circle.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_img_multi_rows.Rd | 11 gtExtras-0.6.0/gtExtras/man/gt_img_rows.Rd | 11 gtExtras-0.6.0/gtExtras/man/gt_index.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_merge_stack.Rd | 2 gtExtras-0.6.0/gtExtras/man/gt_merge_stack_color.Rd | 2 gtExtras-0.6.0/gtExtras/man/gt_plt_bar_pct.Rd | 2 gtExtras-0.6.0/gtExtras/man/gt_plt_bar_stack.Rd | 7 gtExtras-0.6.0/gtExtras/man/gt_plt_dist.Rd | 7 gtExtras-0.6.0/gtExtras/man/gt_plt_percentile.Rd | 2 gtExtras-0.6.0/gtExtras/man/gt_plt_point.Rd | 2 gtExtras-0.6.0/gtExtras/man/gt_plt_sparkline.Rd | 2 gtExtras-0.6.0/gtExtras/man/gt_plt_winloss.Rd | 2 gtExtras-0.6.0/gtExtras/man/gt_theme_538.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_theme_dot_matrix.Rd | 4 gtExtras-0.6.0/gtExtras/man/gt_two_column_layout.Rd | 9 gtExtras-0.6.0/gtExtras/man/gtsave_extra.Rd | 4 gtExtras-0.6.0/gtExtras/man/img_header.Rd | 4 gtExtras-0.6.0/gtExtras/man/pad_fn.Rd | 4 gtExtras-0.6.0/gtExtras/man/plot_data.Rd | 4 gtExtras-0.6.0/gtExtras/man/tab_style_by_grp.Rd | 4 gtExtras-0.6.0/gtExtras/tests/testthat/test-fontawesome-icons.R | 160 +-- gtExtras-0.6.0/gtExtras/tests/testthat/test-gt_img_circle.R | 12 gtExtras-0.6.0/gtExtras/tests/testthat/test-gt_pct_bar.R | 133 +- gtExtras-0.6.0/gtExtras/tests/testthat/test-gt_plt_bar.R | 15 gtExtras-0.6.0/gtExtras/tests/testthat/test-gt_plt_bullet.R | 14 gtExtras-0.6.0/gtExtras/tests/testthat/test-gt_plt_conf_int.R | 65 - gtExtras-0.6.0/gtExtras/tests/testthat/test-gt_plt_percentile_dot.R | 39 gtExtras-0.6.0/gtExtras/tests/testthat/test-gt_plt_point.R | 13 gtExtras-0.6.0/gtExtras/tests/testthat/test-gt_plt_sparkline.R | 14 gtExtras-0.6.0/gtExtras/tests/testthat/test-gt_summary_table.R | 4 gtExtras-0.6.0/gtExtras/tests/testthat/test-gt_win_loss.R | 208 +++- gtExtras-0.6.0/gtExtras/tests/testthat/test-gtsave_extra.R | 3 69 files changed, 1437 insertions(+), 948 deletions(-)