Title: Model Wrappers for Tree-Based Models
Description: Bindings for additional tree-based model engines for use with
the 'parsnip' package. Models include gradient boosted decision trees
with 'LightGBM' (Ke et al, 2017.), conditional inference trees and
conditional random forests with 'partykit' (Hothorn and Zeileis, 2015.
and Hothorn et al, 2006. <doi:10.1198/106186006X133933>), and
accelerated oblique random forests with 'aorsf' (Jaeger et al, 2022
<doi:10.5281/zenodo.7116854>).
Author: Daniel Falbel [aut],
Athos Damiani [aut],
Roel M. Hogervorst [aut] ,
Max Kuhn [aut] ,
Simon Couch [aut] ,
Emil Hvitfeldt [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between bonsai versions 0.4.0 dated 2025-06-25 and 0.4.1 dated 2026-05-21
DESCRIPTION | 10 - MD5 | 24 ++-- NAMESPACE | 1 NEWS.md | 10 + R/catboost.R | 75 +++++++++++++ R/catboost_data.R | 29 +++++ README.md | 2 build/partial.rdb |binary build/vignette.rds |binary man/bonsai-package.Rd | 2 man/catboost_helpers.Rd | 3 man/figures/logo.png |binary tests/testthat/test-catboost.R | 224 +++++++++++++++++++++++++++++++++++++++++ 13 files changed, 360 insertions(+), 20 deletions(-)
Title: A Common API to Clustering
Description: A common interface to specifying clustering models, in the
same style as 'parsnip'. Creates unified interface across different
functions and computational engines.
Author: Emil Hvitfeldt [aut, cre] ,
Kelly Bodwin [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between tidyclust versions 0.2.4 dated 2025-01-27 and 0.3.0 dated 2026-05-21
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| 58 tidyclust-0.3.0/tidyclust/tests/testthat/test-finalize.R |only tidyclust-0.3.0/tidyclust/tests/testthat/test-fit-interfaces.R |only tidyclust-0.3.0/tidyclust/tests/testthat/test-fitting.R |only tidyclust-0.3.0/tidyclust/tests/testthat/test-gm_clust-mclust.R |only tidyclust-0.3.0/tidyclust/tests/testthat/test-gm_clust.R |only tidyclust-0.3.0/tidyclust/tests/testthat/test-hier_clust-stats.R | 38 tidyclust-0.3.0/tidyclust/tests/testthat/test-hier_clust.R | 245 tidyclust-0.3.0/tidyclust/tests/testthat/test-interface-conversion.R |only tidyclust-0.3.0/tidyclust/tests/testthat/test-k_means-clustMixType.R | 52 tidyclust-0.3.0/tidyclust/tests/testthat/test-k_means-clusterR.R | 60 tidyclust-0.3.0/tidyclust/tests/testthat/test-k_means-klaR.R | 44 tidyclust-0.3.0/tidyclust/tests/testthat/test-k_means-stats.R | 57 tidyclust-0.3.0/tidyclust/tests/testthat/test-k_means.R | 81 tidyclust-0.3.0/tidyclust/tests/testthat/test-k_means_diagnostics.R | 32 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tidyclust-0.3.0/tidyclust/tests/testthat/test-workflows.R | 122 tidyclust-0.3.0/tidyclust/vignettes |only 224 files changed, 14471 insertions(+), 6480 deletions(-)
Title: Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Description: Read and write 'las' and 'laz' binary file formats. The LAS file format is a public file format for the interchange of 3-dimensional point cloud data between data users. The LAS specifications are approved by the American Society for Photogrammetry and Remote Sensing <https://community.asprs.org/leadership-restricted/leadership-content/public-documents/standards>. The LAZ file format is an open and lossless compression scheme for binary LAS format versions 1.0 to 1.4 <https://laszip.org/>.
Author: Jean-Romain Roussel [aut, cre, cph],
Florian De Boissieu [aut, ctb] ,
Martin Isenburg [cph] ,
David Auty [ctb] ,
Pierrick Marie [ctb] ,
Tiago de Conto [ctb]
Maintainer: Jean-Romain Roussel <info@r-lidar.com>
Diff between rlas versions 1.9.1 dated 2026-05-14 and 1.9.2 dated 2026-05-21
DESCRIPTION | 6 - MD5 | 12 +- NEWS.md | 4 R/readLAS.r | 3 src/LASzip/lasreaditemcompressed_v4.cpp | 148 ++++++++++++++++-------------- src/LASzip/laswriteitemcompressed_v3.cpp | 152 ++++++++++++++++--------------- src/LASzip/laswriteitemcompressed_v4.cpp | 152 ++++++++++++++++--------------- 7 files changed, 259 insertions(+), 218 deletions(-)
Title: Variational Autoencoders for Heterogeneous Tabular Data
Description: Build and train a variational autoencoder (VAE) for mixed-type
tabular data (continuous, binary, categorical).
Models are implemented using 'TensorFlow' and 'Keras' via the 'reticulate'
interface, enabling reproducible VAE training for heterogeneous tabular
datasets.
Author: Sarah Milligan [aut, cre]
Maintainer: Sarah Milligan <slm1999@bu.edu>
Diff between autotab versions 1.0 dated 2026-03-25 and 1.0.1 dated 2026-05-21
DESCRIPTION | 7 ++++--- MD5 | 17 ++++++++++------- R/data.R |only R/decoder.R | 19 ++++++++++++++++--- R/latent_sampling.R | 10 ++++------ R/loss.R | 3 +-- README.md | 14 ++++++-------- data |only man/Latent_sample.Rd | 10 ++++------ man/data_example.Rd |only man/decoder_model.Rd | 4 ++-- 11 files changed, 47 insertions(+), 37 deletions(-)
Title: Stepwise Regression Analysis
Description: Stepwise regression is a statistical technique used for model selection. This package streamlines stepwise regression analysis by supporting multiple regression types(linear, Cox, logistic, Poisson, Gamma, and negative binomial), incorporating popular selection strategies(forward, backward, bidirectional, and subset), and offering essential metrics. It enables users to apply multiple selection strategies and metrics in a single function call, visualize variable selection processes, and export results in various formats. StepReg offers a data-splitting option to address potential issues with invalid statistical inference and a randomized forward selection option to avoid overfitting. We validated StepReg's accuracy using public datasets within the SAS software environment. For an interactive web interface, users can install the companion 'StepRegShiny' package.
Author: Junhui Li [cre] ,
Junhui Li [aut],
Kai Hu [aut],
Xiaohuan Lu [aut],
Wenxin Liu [aut],
Lihua Julie Zhu [aut]
Maintainer: Junhui Li <junhui.li11@umassmed.edu>
Diff between StepReg versions 1.6.4 dated 2026-05-14 and 1.6.5 dated 2026-05-21
DESCRIPTION | 8 ++-- MD5 | 12 +++--- R/performance.R | 3 + R/stepwise.R | 2 - R/stepwiseUtils.R | 90 +++++++++++++++++++++++++++++--------------------- inst/doc/StepReg.html | 60 ++++++++++++++++----------------- man/performance.Rd | 3 + 7 files changed, 98 insertions(+), 80 deletions(-)
Title: Manipulation Testing Based on Density Discontinuity
Description: Density discontinuity testing (a.k.a. manipulation testing) is commonly employed in regression discontinuity designs and other program evaluation settings to detect perfect self-selection (manipulation) around a cutoff where treatment/policy assignment changes. This package implements manipulation testing procedures using local polynomial density estimators: rddensity() constructs test statistics and p-values given a prespecified cutoff, rdbwdensity() performs data-driven bandwidth selection, and rdplotdensity() constructs density plots.
Author: Matias D. Cattaneo [aut, cre],
Michael Jansson [aut],
Xinwei Ma [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between rddensity versions 2.6 dated 2024-10-06 and 3.0 dated 2026-05-21
DESCRIPTION | 40 ++++++++++++++++++++-------------------- MD5 | 25 ++++++++++++++----------- R/rdbwdensity.R | 44 +++++++++++++++++++++++--------------------- R/rddensity-package.R | 6 +++--- R/rddensity.R | 38 +++++++++++++++++++++----------------- R/rddensity_fun.R | 34 +++++++++++++++++++++++++++++++--- R/rdplotdensity.R | 6 +++--- build/partial.rdb |binary man/rdbwdensity.Rd | 6 +++--- man/rddensity-package.Rd | 6 +++--- man/rddensity.Rd | 6 +++--- man/rdplotdensity.Rd | 6 +++--- tests |only 13 files changed, 127 insertions(+), 90 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models. References: Lüdecke et al. (2021) <doi:10.21105/joss.03139>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Remi Theriault [aut, ctb] ,
Vincent Arel-Bundock [ctb] ,
Martin J [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between performance versions 0.16.0 dated 2026-02-04 and 0.17.0 dated 2026-05-21
DESCRIPTION | 12 MD5 | 103 +++---- NAMESPACE | 1 NEWS.md | 28 ++ R/check_collinearity.R | 53 +++ R/check_homogeneity.R | 2 R/check_model.R | 28 ++ R/check_outliers.R | 6 R/check_predictions.R | 80 ++--- R/performance_cv.R | 282 +++++++++++---------- R/test_likelihoodratio.R | 15 - R/test_performance.R | 15 - build/partial.rdb |binary man/check_autocorrelation.Rd | 22 - man/check_collinearity.Rd | 22 - man/check_convergence.Rd | 22 - man/check_heteroscedasticity.Rd | 22 - man/check_homogeneity.Rd | 22 - man/check_model.Rd | 51 ++- man/check_outliers.Rd | 32 +- man/check_overdispersion.Rd | 22 - man/check_predictions.Rd | 29 +- man/check_singularity.Rd | 22 - man/check_zeroinflation.Rd | 22 - man/compare_performance.Rd | 2 man/figures/card.png |binary man/figures/figure_workflow.png |binary man/figures/logo.png |binary man/figures/pp_check.png |binary man/figures/unnamed-chunk-14-1.png |binary man/figures/unnamed-chunk-15-1.png |binary man/figures/unnamed-chunk-20-1.png |binary man/figures/unnamed-chunk-21-1.png |binary man/performance-package.Rd | 1 man/performance_accuracy.Rd | 2 man/performance_cv.Rd | 6 man/r2_mlm.Rd | 2 man/reexports.Rd | 2 man/test_performance.Rd | 15 - tests/testthat/test-check_autocorrelation_simres.R | 4 tests/testthat/test-check_collinearity.R | 110 ++++++++ tests/testthat/test-check_homogeneity.R | 12 tests/testthat/test-check_normality.R | 2 tests/testthat/test-check_outliers.R | 2 tests/testthat/test-check_overdispersion.R | 18 - tests/testthat/test-check_predictions.R | 52 +++ tests/testthat/test-check_residuals.R | 2 tests/testthat/test-check_zeroinflation.R | 25 - tests/testthat/test-discovr_book.R |only tests/testthat/test-glmmPQL.R | 2 tests/testthat/test-performance_cv.R | 27 +- tests/testthat/test-r2_mcfadden.R | 4 tests/testthat/test-test_likelihoodratio.R | 71 +++++ 53 files changed, 827 insertions(+), 447 deletions(-)
Title: Model Evaluation and Analysis
Description: Analyses species distribution models and evaluates their performance. It includes functions for variation partitioning, extracting variable importance, computing several metrics of model discrimination and calibration performance, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots. Initially described in Barbosa et al. (2013) <doi:10.1111/ddi.12100>.
Author: A. Marcia Barbosa [aut, cre],
Jennifer A. Brown [aut],
Alberto Jimenez-Valverde [aut],
Raimundo Real [aut],
Oswald van Ginkel [ctb],
Jurica Levatic [ctb],
Victoria Formoso-Freire [ctb],
Andres Baselga [ctb],
Carola Gomez-Rodriguez [ctb],
Carlos C. Ra [...truncated...]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between modEvA versions 3.41 dated 2026-01-09 and 3.45 dated 2026-05-21
DESCRIPTION | 16 +-- MD5 | 98 ++++++++++--------- NAMESPACE | 10 + NEWS.md | 113 +++++++++++++++++++++- R/AUC.R | 33 +++++- R/Boyce.R | 67 +++++++------ R/HLfit.R | 203 ++++++++++++++++++++++------------------ R/Miller.R |only R/MillerCalib.R | 48 --------- R/evaluate.R | 8 - R/getBins.R | 246 ++++++++++++++++++++++++++++++------------------- R/lollipop.R | 2 R/modEvAmethods.R | 17 +-- R/multModEv.R | 2 R/optiPair.R | 2 R/optiThresh.R | 2 R/plotGLM.R | 162 ++++++++++++++++---------------- R/poMeasures.R |only R/predDensity.R | 236 ++++++++++++++++++++++++----------------------- R/predPlot.R | 80 +++++++-------- R/threshMeasures.R | 33 ++++-- data/rotif.mods.rda |binary inst/CITATION | 67 ++++++++++--- man/AUC.Rd | 31 ++++-- man/Boyce.Rd | 37 ++++--- man/Dsquared.Rd | 4 man/HLfit.Rd | 40 +++---- man/Miller.Rd |only man/MillerCalib.Rd | 102 ++++---------------- man/RMSE.Rd | 4 man/RsqGLM.Rd | 4 man/applyThreshold.Rd | 2 man/confusionLabel.Rd | 2 man/confusionMatrix.Rd | 2 man/errorMeasures.Rd | 118 +++++++++++------------ man/getBins.Rd | 49 ++++----- man/getModEqn.Rd | 4 man/getThreshold.Rd | 2 man/inputMunch.Rd | 4 man/logLike.Rd | 132 +++++++++++++------------- man/lollipop.Rd | 6 - man/modEvA-package.Rd | 33 +++--- man/multModEv.Rd | 6 - man/optiPair.Rd | 4 man/optiThresh.Rd | 4 man/plotGLM.Rd | 4 man/poMeasures.Rd |only man/predDensity.Rd | 16 +-- man/predPlot.Rd | 162 ++++++++++++++++---------------- man/pseudoRsq.Rd | 14 +- man/similarity.Rd | 2 man/threshMeasures.Rd | 55 ++++++++-- 52 files changed, 1272 insertions(+), 1016 deletions(-)
Title: Feature Selection for 'mlr3'
Description: Feature selection package of the 'mlr3' ecosystem. It selects
the optimal feature set for any 'mlr3' learner. The package works with
several optimization algorithms e.g. Random Search, Recursive Feature
Elimination, and Genetic Search. Moreover, it can automatically
optimize learners and estimate the performance of optimized feature
sets with nested resampling.
Author: Marc Becker [aut, cre] ,
Patrick Schratz [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
John Zobolas [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 1.5.1 dated 2026-03-18 and 1.6.0 dated 2026-05-21
mlr3fselect-1.5.1/mlr3fselect/tests/testthat/helper_rush.R |only mlr3fselect-1.6.0/mlr3fselect/DESCRIPTION | 13 mlr3fselect-1.6.0/mlr3fselect/MD5 | 233 +++---- mlr3fselect-1.6.0/mlr3fselect/NEWS.md | 7 mlr3fselect-1.6.0/mlr3fselect/R/ArchiveAsyncFSelect.R | 44 - mlr3fselect-1.6.0/mlr3fselect/R/ArchiveAsyncFSelectFrozen.R | 34 - mlr3fselect-1.6.0/mlr3fselect/R/ArchiveBatchFSelect.R | 39 - mlr3fselect-1.6.0/mlr3fselect/R/AutoFSelector.R | 83 +- mlr3fselect-1.6.0/mlr3fselect/R/CallbackAsyncFSelect.R | 95 +- mlr3fselect-1.6.0/mlr3fselect/R/CallbackBatchFSelect.R | 68 +- mlr3fselect-1.6.0/mlr3fselect/R/ContextAsyncFSelect.R | 9 mlr3fselect-1.6.0/mlr3fselect/R/ContextBatchFSelect.R | 11 mlr3fselect-1.6.0/mlr3fselect/R/EnsembleFSResult.R | 229 ++++--- mlr3fselect-1.6.0/mlr3fselect/R/FSelectInstanceAsyncMultiCrit.R | 22 mlr3fselect-1.6.0/mlr3fselect/R/FSelectInstanceAsyncSingleCrit.R | 19 mlr3fselect-1.6.0/mlr3fselect/R/FSelectInstanceBatchMultiCrit.R | 16 mlr3fselect-1.6.0/mlr3fselect/R/FSelectInstanceBatchSingleCrit.R | 28 mlr3fselect-1.6.0/mlr3fselect/R/FSelector.R | 20 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorAsync.R | 13 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorAsyncDesignPoints.R | 4 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorAsyncExhaustiveSearch.R | 19 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorAsyncFromOptimizerAsync.R | 14 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorAsyncRandomSearch.R | 4 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatch.R | 37 - mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchDesignPoints.R | 4 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchExhaustiveSearch.R | 19 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchFromOptimizerBatch.R | 9 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchGeneticSearch.R | 20 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchRFE.R | 68 +- mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchRFECV.R | 46 - mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchRandomSearch.R | 7 mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchSequential.R | 53 - mlr3fselect-1.6.0/mlr3fselect/R/FSelectorBatchShadowVariableSearch.R | 78 +- mlr3fselect-1.6.0/mlr3fselect/R/ObjectiveFSelect.R | 16 mlr3fselect-1.6.0/mlr3fselect/R/ObjectiveFSelectAsync.R | 41 + mlr3fselect-1.6.0/mlr3fselect/R/ObjectiveFSelectBatch.R | 36 - mlr3fselect-1.6.0/mlr3fselect/R/assertions.R | 38 - mlr3fselect-1.6.0/mlr3fselect/R/auto_fselector.R | 5 mlr3fselect-1.6.0/mlr3fselect/R/bibentries.R | 27 mlr3fselect-1.6.0/mlr3fselect/R/embedded_ensemble_fselect.R | 19 mlr3fselect-1.6.0/mlr3fselect/R/ensemble_fselect.R | 30 mlr3fselect-1.6.0/mlr3fselect/R/extract_inner_fselect_archives.R | 32 mlr3fselect-1.6.0/mlr3fselect/R/extract_inner_fselect_results.R | 34 - mlr3fselect-1.6.0/mlr3fselect/R/faggregate.R | 27 mlr3fselect-1.6.0/mlr3fselect/R/fselect.R | 20 mlr3fselect-1.6.0/mlr3fselect/R/fselect_nested.R | 5 mlr3fselect-1.6.0/mlr3fselect/R/helper.R | 9 mlr3fselect-1.6.0/mlr3fselect/R/mlr_callbacks.R | 53 + mlr3fselect-1.6.0/mlr3fselect/R/mlr_fselectors.R | 27 mlr3fselect-1.6.0/mlr3fselect/R/sugar.R | 19 mlr3fselect-1.6.0/mlr3fselect/README.md | 26 mlr3fselect-1.6.0/mlr3fselect/build/partial.rdb |binary mlr3fselect-1.6.0/mlr3fselect/inst/testthat/helper_expectations.R | 7 mlr3fselect-1.6.0/mlr3fselect/inst/testthat/helper_fselector.R | 6 mlr3fselect-1.6.0/mlr3fselect/inst/testthat/helper_misc.R | 42 - mlr3fselect-1.6.0/mlr3fselect/man/ArchiveAsyncFSelect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/ArchiveBatchFSelect.Rd | 11 mlr3fselect-1.6.0/mlr3fselect/man/AutoFSelector.Rd | 19 mlr3fselect-1.6.0/mlr3fselect/man/CallbackAsyncFSelect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/CallbackBatchFSelect.Rd | 6 mlr3fselect-1.6.0/mlr3fselect/man/ContextBatchFSelect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/FSelectInstanceAsyncMultiCrit.Rd | 13 mlr3fselect-1.6.0/mlr3fselect/man/FSelectInstanceAsyncSingleCrit.Rd | 10 mlr3fselect-1.6.0/mlr3fselect/man/FSelectInstanceBatchMultiCrit.Rd | 10 mlr3fselect-1.6.0/mlr3fselect/man/FSelectInstanceBatchSingleCrit.Rd | 19 mlr3fselect-1.6.0/mlr3fselect/man/FSelector.Rd | 6 mlr3fselect-1.6.0/mlr3fselect/man/FSelectorAsync.Rd | 15 mlr3fselect-1.6.0/mlr3fselect/man/FSelectorAsyncFromOptimizerAsync.Rd | 6 mlr3fselect-1.6.0/mlr3fselect/man/FSelectorBatch.Rd | 31 mlr3fselect-1.6.0/mlr3fselect/man/ObjectiveFSelect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/ObjectiveFSelectAsync.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/ObjectiveFSelectBatch.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/auto_fselector.Rd | 15 mlr3fselect-1.6.0/mlr3fselect/man/callback_async_fselect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/callback_batch_fselect.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/embedded_ensemble_fselect.Rd | 20 mlr3fselect-1.6.0/mlr3fselect/man/ensemble_fs_result.Rd | 93 +- mlr3fselect-1.6.0/mlr3fselect/man/ensemble_fselect.Rd | 27 mlr3fselect-1.6.0/mlr3fselect/man/extract_inner_fselect_archives.Rd | 8 mlr3fselect-1.6.0/mlr3fselect/man/extract_inner_fselect_results.Rd | 6 mlr3fselect-1.6.0/mlr3fselect/man/fselect.Rd | 18 mlr3fselect-1.6.0/mlr3fselect/man/fsi.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/fsi_async.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/mlr3fselect.async_freeze_archive.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/mlr3fselect.svm_rfe.Rd | 2 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_genetic_search.Rd | 2 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_random_search.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_rfe.Rd | 15 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_rfecv.Rd | 21 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_sequential.Rd | 6 mlr3fselect-1.6.0/mlr3fselect/man/mlr_fselectors_shadow_variable_search.Rd | 3 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/helper.R | 5 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/setup.R | 14 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/teardown.R | 4 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_ArchiveAsyncFSelect.R | 21 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_ArchiveBatchFSelect.R | 322 ++++++++-- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_AutoFSelector.R | 94 ++ mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_CallbackAsyncFSelect.R | 254 ++++--- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectInstanceMultiCrit.R | 21 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectInstanceSingleCrit.R | 34 - mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorAsyncDesignPoints.R | 3 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorBatchDesignPoints.R | 6 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorExhaustiveSearch.R | 2 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorRFE.R | 37 - mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorRFECV.R | 28 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_FSelectorShadowVariableSearch.R | 10 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_ObjectiveFSelect.R | 90 +- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_ObjectiveFSelectAsync.R | 61 + mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_auto_fselector.R | 28 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_embedded_ensemble_fselect.R | 16 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_ensemble_fselect.R | 112 ++- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_extract_inner_fselect_archives.R | 293 ++++++++- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_extract_inner_fselect_result.R | 306 ++++++++- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_fselect.R | 30 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_fselect_nested.R | 12 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_fsi.R | 119 ++- mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_fsi_async.R | 6 mlr3fselect-1.6.0/mlr3fselect/tests/testthat/test_mlr_callbacks.R | 1 118 files changed, 2923 insertions(+), 1308 deletions(-)
Title: R Logging Package
Description: Pure R implementation of the ubiquitous log4j package. It offers hierarchic
loggers, multiple handlers per logger, level based filtering, space handling in messages
and custom formatting.
Author: Mario Frasca [aut, cre],
Walerian Sokolowski [aut]
Maintainer: Mario Frasca <mariotomo@gmail.com>
Diff between logging versions 0.10-108 dated 2019-07-14 and 0.10-111 dated 2026-05-21
DESCRIPTION | 16 ++++++++-------- MD5 | 9 +++++---- R/utils.R | 2 +- man/logging-package.Rd | 2 +- tests/testthat/_problems |only tests/testthat/test.msg-composer.R | 3 +++ 6 files changed, 18 insertions(+), 14 deletions(-)
Title: Accessing and Analyzing Large-Scale Environmental Data
Description: Functions are designed to facilitate access to and utility with large scale, publicly available environmental data in R. The package contains functions for downloading raw data files from web URLs (download_data()), processing the raw data files into clean spatial objects (process_covariates()), and extracting values from the spatial data objects at point and polygon locations (calculate_covariates()). These functions call a series of source-specific functions which are tailored to each data sources/datasets particular URL structure, data format, and spatial/temporal resolution. The functions are tested, versioned, and open source and open access. For sum_edc() method details, see Messier, Akita, and Serre (2012) <doi:10.1021/es203152a>.
Author: Mitchell Manware [aut, ctb] ,
Insang Song [aut, ctb] ,
Eva Marques [aut, ctb] ,
Mariana Alifa Kassien [aut, ctb] ,
Elizabeth Scholl [ctb] ,
Kyle Messier [aut, cre] ,
Spatiotemporal Exposures and Toxicology Group [cph]
Maintainer: Kyle Messier <kyle.messier@nih.gov>
Diff between amadeus versions 1.3.2.1 dated 2026-01-26 and 2.0.0 dated 2026-05-21
amadeus-1.3.2.1/amadeus/R/helpers.R |only amadeus-1.3.2.1/amadeus/inst/doc/gridmet_workflow.R |only amadeus-1.3.2.1/amadeus/inst/doc/gridmet_workflow.Rmd |only amadeus-1.3.2.1/amadeus/inst/doc/gridmet_workflow.html |only amadeus-1.3.2.1/amadeus/inst/doc/narr_workflow.R |only amadeus-1.3.2.1/amadeus/inst/doc/narr_workflow.Rmd |only amadeus-1.3.2.1/amadeus/inst/doc/narr_workflow.html |only amadeus-1.3.2.1/amadeus/inst/doc/terraclimate_workflow.R |only amadeus-1.3.2.1/amadeus/inst/doc/terraclimate_workflow.Rmd |only amadeus-1.3.2.1/amadeus/inst/doc/terraclimate_workflow.html |only amadeus-1.3.2.1/amadeus/inst/extdata/nasa |only amadeus-1.3.2.1/amadeus/inst/extdata/nlcd_classes.csv |only amadeus-1.3.2.1/amadeus/inst/extdata/openlandmap_assets.rds |only amadeus-1.3.2.1/amadeus/man/cov.Rd |only amadeus-1.3.2.1/amadeus/man/interactive.Rd |only amadeus-1.3.2.1/amadeus/man/process_modis_sds.Rd |only amadeus-1.3.2.1/amadeus/man/test.Rd |only amadeus-1.3.2.1/amadeus/man/test_download_functions.Rd 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amadeus-2.0.0/amadeus/man/download_data.Rd | 33 amadeus-2.0.0/amadeus/man/download_drought.Rd |only amadeus-2.0.0/amadeus/man/download_ecoregion.Rd | 70 amadeus-2.0.0/amadeus/man/download_edgar.Rd | 28 amadeus-2.0.0/amadeus/man/download_geos.Rd | 73 amadeus-2.0.0/amadeus/man/download_gmted.Rd | 64 amadeus-2.0.0/amadeus/man/download_goes.Rd |only amadeus-2.0.0/amadeus/man/download_gridmet.Rd | 70 amadeus-2.0.0/amadeus/man/download_groads.Rd | 72 amadeus-2.0.0/amadeus/man/download_hms.Rd | 81 amadeus-2.0.0/amadeus/man/download_huc.Rd | 21 amadeus-2.0.0/amadeus/man/download_improve.Rd |only amadeus-2.0.0/amadeus/man/download_koppen_geiger.Rd | 84 amadeus-2.0.0/amadeus/man/download_merra2.Rd | 246 amadeus-2.0.0/amadeus/man/download_modis.Rd | 152 amadeus-2.0.0/amadeus/man/download_narr.Rd | 193 amadeus-2.0.0/amadeus/man/download_nei.Rd | 101 amadeus-2.0.0/amadeus/man/download_nlcd.Rd | 90 amadeus-2.0.0/amadeus/man/download_population.Rd | 75 amadeus-2.0.0/amadeus/man/download_prism.Rd | 47 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Title: Power Analyses using Monte Carlo Simulations
Description: Provides a general purpose simulation-based power analysis
API for routine and customized simulation experimental designs.
The package focuses exclusively on Monte Carlo simulation experiment variants of
(expected) prospective power analyses,
criterion analyses, compromise analyses, sensitivity analyses, and
a priori/post-hoc analyses. The default simulation experiment functions defined within the package
provide stochastic variants of the power analysis subroutines in
G*Power 3.1 (Faul, Erdfelder, Buchner, and Lang, 2009) <doi:10.3758/brm.41.4.1149>,
along with various other parametric and non-parametric power analysis
applications (e.g., mediation analyses) and support for Bayesian power analysis
by way of Bayes factors or posterior probability evaluations.
Additional functions for building
empirical power curves, reanalyzing simulation information, and
for increasing the precision of the resulting power
estimates are also included, each of which utilize similar API structures. [...truncated...]
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between Spower versions 0.6.2 dated 2026-05-05 and 0.6.3 dated 2026-05-21
DESCRIPTION | 6 MD5 | 34 - inst/doc/SpowerIntro.R | 26 inst/doc/SpowerIntro.Rmd | 28 - inst/doc/SpowerIntro.html | 354 ++++++------ inst/doc/SpowerIntro_logicals.R | 20 inst/doc/SpowerIntro_logicals.Rmd | 20 inst/doc/SpowerIntro_logicals.html | 378 ++++++------- inst/doc/Spower_TypeSM.R | 10 inst/doc/Spower_TypeSM.Rmd | 10 inst/doc/Spower_TypeSM.html | 178 +++--- inst/doc/gpower_examples.R | 82 +- inst/doc/gpower_examples.Rmd | 82 +- inst/doc/gpower_examples.html | 1022 ++++++++++++++++++------------------- vignettes/SpowerIntro.Rmd | 28 - vignettes/SpowerIntro_logicals.Rmd | 20 vignettes/Spower_TypeSM.Rmd | 10 vignettes/gpower_examples.Rmd | 82 +- 18 files changed, 1195 insertions(+), 1195 deletions(-)
Title: Regional and Multi-Regional Input-Output Data
Description: Provides Regional (Brazil, 2020) and Multi-Regional (World, 2000)
input-output matrices for R. This package serves as a data-only
companion to the 'fio' package, facilitating input-output analysis
by providing standardized R6 data objects.
Author: Alberson da Silva Miranda [aut, cre, cph] ,
Celso Bissoli Sessa [aut, dtc]
Maintainer: Alberson da Silva Miranda <albersonmiranda@hotmail.com>
Diff between fiodata versions 0.1.1 dated 2026-03-05 and 0.2.0 dated 2026-05-21
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ README.md | 1 + data/br_2020.rda |binary data/world_2000.rda |binary man/fiodata-package.Rd | 1 + 7 files changed, 16 insertions(+), 10 deletions(-)
Title: Interface for Large Language Model APIs in R
Description: Provides a unified interface to large language models across multiple
providers. Supports text generation, tidy data workflows, structured output
with optional JSON Schema validation, XML-like tag extraction, and embeddings.
Includes chat sessions, consistent error handling, and parallel batch tools.
Author: Ali Sanaei [aut, cre]
Maintainer: Ali Sanaei <sanaei@uchicago.edu>
Diff between LLMR versions 0.6.3 dated 2025-10-11 and 0.6.4 dated 2026-05-21
LLMR-0.6.3/LLMR/.aspell |only LLMR-0.6.4/LLMR/DESCRIPTION | 14 LLMR-0.6.4/LLMR/MD5 | 124 ++-- LLMR-0.6.4/LLMR/NAMESPACE | 3 LLMR-0.6.4/LLMR/NEWS.md | 18 LLMR-0.6.4/LLMR/R/LLMR.R | 487 +++++++++--------- LLMR-0.6.4/LLMR/R/LLMR_response.R | 34 - LLMR-0.6.4/LLMR/R/LLMR_tidy.R | 96 ++- LLMR-0.6.4/LLMR/R/LLM_chat_session.R | 2 LLMR-0.6.4/LLMR/R/LLM_parallel_utils.R | 45 - LLMR-0.6.4/LLMR/R/LLM_robust_utils.R | 7 LLMR-0.6.4/LLMR/R/globalVariables.R | 3 LLMR-0.6.4/LLMR/R/json_mode.R | 29 + LLMR-0.6.4/LLMR/R/tags_mode.R |only LLMR-0.6.4/LLMR/README.md | 155 ++++- LLMR-0.6.4/LLMR/inst/doc/about-schema.R | 8 LLMR-0.6.4/LLMR/inst/doc/about-schema.Rmd | 26 LLMR-0.6.4/LLMR/inst/doc/about-schema.html | 40 - LLMR-0.6.4/LLMR/inst/doc/chat-basics.R | 2 LLMR-0.6.4/LLMR/inst/doc/chat-basics.Rmd | 10 LLMR-0.6.4/LLMR/inst/doc/chat-basics.html | 14 LLMR-0.6.4/LLMR/inst/doc/experiments.R | 6 LLMR-0.6.4/LLMR/inst/doc/experiments.Rmd | 6 LLMR-0.6.4/LLMR/inst/doc/experiments.html | 6 LLMR-0.6.4/LLMR/inst/doc/presidential_embeddings.R | 102 ++- LLMR-0.6.4/LLMR/inst/doc/presidential_embeddings.Rmd | 76 +- LLMR-0.6.4/LLMR/inst/doc/presidential_embeddings.html | 85 +-- LLMR-0.6.4/LLMR/inst/doc/tidy-and-structured.R | 18 LLMR-0.6.4/LLMR/inst/doc/tidy-and-structured.Rmd | 31 - LLMR-0.6.4/LLMR/inst/doc/tidy-and-structured.html | 89 ++- LLMR-0.6.4/LLMR/inst/examples/JSON-Scheme.R | 4 LLMR-0.6.4/LLMR/inst/examples/LLM_experiment.R | 4 LLMR-0.6.4/LLMR/inst/examples/demo.qmd | 70 ++ LLMR-0.6.4/LLMR/man/LLMR-package.Rd |only LLMR-0.6.4/LLMR/man/call_llm.Rd | 9 LLMR-0.6.4/LLMR/man/call_llm_broadcast.Rd | 10 LLMR-0.6.4/LLMR/man/call_llm_compare.Rd | 14 LLMR-0.6.4/LLMR/man/call_llm_par.Rd | 11 LLMR-0.6.4/LLMR/man/call_llm_par_structured.Rd | 4 LLMR-0.6.4/LLMR/man/call_llm_robust.Rd | 2 LLMR-0.6.4/LLMR/man/call_llm_sweep.Rd | 10 LLMR-0.6.4/LLMR/man/disable_structured_output.Rd | 3 LLMR-0.6.4/LLMR/man/enable_structured_output.Rd | 11 LLMR-0.6.4/LLMR/man/get_batched_embeddings.Rd | 2 LLMR-0.6.4/LLMR/man/llm_chat_session.Rd | 2 LLMR-0.6.4/LLMR/man/llm_config.Rd | 29 - LLMR-0.6.4/LLMR/man/llm_fn.Rd | 17 LLMR-0.6.4/LLMR/man/llm_fn_structured.Rd | 4 LLMR-0.6.4/LLMR/man/llm_mutate.Rd | 67 ++ LLMR-0.6.4/LLMR/man/llm_mutate_structured.Rd | 8 LLMR-0.6.4/LLMR/man/llm_mutate_tags.Rd |only LLMR-0.6.4/LLMR/man/llm_parse_structured.Rd | 8 LLMR-0.6.4/LLMR/man/llm_parse_structured_col.Rd | 9 LLMR-0.6.4/LLMR/man/llm_parse_tags.Rd |only LLMR-0.6.4/LLMR/man/llm_parse_tags_col.Rd |only LLMR-0.6.4/LLMR/man/llm_validate_structured_col.Rd | 3 LLMR-0.6.4/LLMR/man/log_llm_error.Rd | 2 LLMR-0.6.4/LLMR/man/parse_embeddings.Rd | 2 LLMR-0.6.4/LLMR/tests/testthat/test-call_llm.R | 2 LLMR-0.6.4/LLMR/tests/testthat/test-gemini-vertex.R |only LLMR-0.6.4/LLMR/tests/testthat/test-json-mode.R | 23 LLMR-0.6.4/LLMR/tests/testthat/test-llm_fn.R | 2 LLMR-0.6.4/LLMR/vignettes/about-schema.Rmd | 26 LLMR-0.6.4/LLMR/vignettes/chat-basics.Rmd | 10 LLMR-0.6.4/LLMR/vignettes/experiments.Rmd | 6 LLMR-0.6.4/LLMR/vignettes/presidential_embeddings.Rmd | 76 +- LLMR-0.6.4/LLMR/vignettes/tidy-and-structured.Rmd | 31 - 67 files changed, 1317 insertions(+), 700 deletions(-)
Title: Leakage-Safe Modeling and Auditing for Genomic and Clinical Data
Description: Prevents and detects information leakage in biomedical machine learning.
Provides leakage-resistant split policies (subject-grouped, batch-blocked, study leave-out, time-ordered),
guarded preprocessing (train-only imputation, normalization, filtering, feature selection),
cross-validated fitting with common learners, permutation-gap auditing, batch and fold association tests,
and duplicate detection.
Author: Selcuk Korkmaz [aut, cre]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between bioLeak versions 0.3.7 dated 2026-04-29 and 0.3.8 dated 2026-05-21
DESCRIPTION | 16 - MD5 | 76 ++--- NAMESPACE | 15 + R/accessors.R | 445 ++++++++++++++++++-------------- R/audit.R | 22 + R/classes.R | 37 ++ R/delta_lsi.R | 29 +- R/fit_resample.R | 16 + R/globals.R | 2 R/make_split_plan.R | 6 R/plotting_audit.R | 180 ++++++++++++ R/simulate_suite.R | 8 inst/doc/bioLeak-intro.R | 22 - inst/doc/bioLeak-intro.Rmd | 27 + inst/doc/bioLeak-intro.html | 115 ++++---- man/LeakClasses.Rd | 55 +++ man/audit_batch_assoc.Rd | 16 - man/audit_duplicates.Rd | 23 + man/audit_info.Rd | 23 + man/audit_leakage.Rd | 22 + man/audit_perm_gap.Rd | 13 man/audit_target_assoc.Rd | 24 + man/delta_lsi.Rd | 29 +- man/dlsi_R_eff.Rd | 17 - man/dlsi_ci.Rd | 22 + man/dlsi_metric.Rd | 13 man/dlsi_p_value.Rd | 13 man/dlsi_repeats.Rd | 13 man/dlsi_robust.Rd | 13 man/dlsi_tier.Rd | 17 - man/fit_metrics.Rd | 13 man/fit_resample.Rd | 16 + man/make_split_plan.Rd | 6 man/plot-LeakAudit-missing-method.Rd |only man/plot-LeakDeltaLSI-missing-method.Rd |only man/plot-LeakFit-missing-method.Rd |only man/plot_dlsi_repeats.Rd |only man/simulate_leakage_suite.Rd | 8 tests/testthat/test-accessors.R | 43 +-- tests/testthat/test-plot-methods.R |only tests/testthat/test-s4-accessors.R |only vignettes/bioLeak-intro.Rmd | 27 + 42 files changed, 1009 insertions(+), 433 deletions(-)
Title: High Throughput Phenotyping (HTP) Data Analysis
Description: Phenotypic analysis of data coming from high throughput
phenotyping (HTP) platforms, including different types of outlier detection,
spatial analysis, and parameter estimation. The package is being developed
within the EPPN2020 project (<https://cordis.europa.eu/project/id/731013>).
Some functions have been created to be used in conjunction with the R
package 'asreml' for the 'ASReml' software, which can be obtained upon
purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r/>).
Author: Emilie J Millet [aut] ,
Maria Xose Rodriguez Alvarez [aut] ,
Diana Marcela Perez Valencia [aut] ,
Isabelle Sanchez [aut],
Nadine Hilgert [aut],
Bart-Jan van Rossum [aut, cre] ,
Fred van Eeuwijk [aut] ,
Martin Boer [aut]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenHTP versions 1.0.9.1 dated 2025-07-03 and 1.0.9.2 dated 2026-05-21
DESCRIPTION | 10 +-- MD5 | 74 +++++++++++------------ NEWS.md | 4 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/Overview_HTP.html | 82 ++++++++++++-------------- inst/tinytest/test_detectSerieOut.R | 8 +- inst/tinytest/test_estimateSplineParameters.R | 2 inst/tinytest/test_fitSpline.R | 4 - man/as.data.frame.TP.Rd | 12 +-- man/createTimePoints.Rd | 12 +-- man/detectSerieOut.Rd | 6 - man/detectSingleOut.Rd | 8 +- man/detectSingleOutMaize.Rd | 8 +- man/estimateSplineParameters.Rd | 4 - man/fitModels.Rd | 16 ++--- man/fitSpline.Rd | 4 - man/fitSplineHDM.Rd | 6 - man/getCorrected.Rd | 16 ++--- man/getEffDims.Rd | 16 ++--- man/getGenoPred.Rd | 16 ++--- man/getHerit.Rd | 16 ++--- man/getTimePoints.Rd | 12 +-- man/getVar.Rd | 16 ++--- man/plot.HTPSpline.Rd | 4 - man/plot.TP.Rd | 12 +-- man/plot.fitMod.Rd | 16 ++--- man/plot.psHDM.Rd | 6 - man/plot.serieOut.Rd | 6 - man/plot.singleOut.Rd | 8 +- man/plot.splineEst.Rd | 4 - man/predict.psHDM.Rd | 6 - man/removeSerieOut.Rd | 6 - man/removeSingleOut.Rd | 8 +- man/removeTimePoints.Rd | 12 +-- man/statgenHTP-package.Rd | 1 man/summary.TP.Rd | 12 +-- man/summary.fitMod.Rd | 16 ++--- 38 files changed, 236 insertions(+), 233 deletions(-)
Title: Helper Package for Installing 'OpenCV'
Description: Installs 'OpenCV' for use by other packages. 'OpenCV' <https://opencv.org/>
is library of programming functions mainly aimed at real-time computer
vision. This 'Lite' version installs the stable base version of 'OpenCV' and
some of its experimental externally contributed modules. It does not provide
R bindings directly.
Author: Simon Garnier [aut, cre, cph] ,
Muschelli John [ctb]
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between ROpenCVLite versions 4.110.0 dated 2025-05-05 and 4.130.0 dated 2026-05-21
DESCRIPTION | 31 +++-- MD5 | 41 ++++--- NEWS.md | 25 ++++ R/ROpenCVLite.R | 2 R/install.R | 237 +++++++++++++++++++++++++++++++-------------- R/utils.R | 148 +++++++++++++++++++--------- R/zzz.R | 61 ++++------- README.md | 13 -- build/vignette.rds |binary inst/doc/install.R | 9 - inst/doc/install.Rmd | 89 ++++++---------- inst/doc/install.html | 82 ++++++--------- inst/doc/usage.Rmd | 2 inst/doc/usage.html | 2 man/ROpenCVLite-package.Rd | 1 man/defaultOpenCVPath.Rd | 2 man/installOpenCV.Rd | 25 ++++ tests |only vignettes/install.Rmd | 89 ++++++---------- vignettes/usage.Rmd | 2 20 files changed, 497 insertions(+), 364 deletions(-)
Title: Correction of Preprocessed MS Data
Description: An 'R' implementation of the 'python' program Metabolomics Peak Analysis Computational Tool ('MPACT') (Robert M. Samples, Sara P. Puckett, and Marcy J. Balunas (2023) <doi:10.1021/acs.analchem.2c04632>). Filters in the package serve to address common errors in tandem mass spectrometry preprocessing, including: (1) isotopic patterns that are incorrectly split during preprocessing, (2) features present in solvent blanks due to carryover between samples, (3) features whose abundance is greater than user-defined abundance threshold in a specific group of samples, for example media blanks, (4) ions that are inconsistent between technical replicates, and (5) in-source fragment ions created during ionization before fragmentation in the tandem mass spectrometry workflow.
Author: Allison Mason [aut] ,
Gregory Johnson [aut] ,
Patrick Schloss [aut, cre, cph]
Maintainer: Patrick Schloss <pschloss@umich.edu>
Diff between mpactr versions 0.3.2 dated 2026-05-14 and 0.3.3 dated 2026-05-21
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Title: Extra Geometries and Stats for 'ggplot2'
Description: A collection of layers for 'ggplot2'. Provides geoms built on
linear and radial gradients from the 'grid' package, giving areas, bars,
paths, rectangles, and ridgelines a fading or glowing visual effect.
Also includes mathematically driven layers — catenary curves,
Chaikin's corner-cutting smoothing
(Chaikin, 1974, <doi:10.1016/0146-664X(74)90028-8>), and Fourier-series
reconstruction — plus Lexis diagrams, isotype bar charts.
Author: Markus Doering [aut, cre, cph]
Maintainer: Markus Doering <m4rkus.doering@gmail.com>
Diff between ggpointless versions 0.2.0 dated 2026-03-09 and 0.3.0 dated 2026-05-21
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Title: Understand and Describe Bayesian Models and Posterior
Distributions
Description: Provides utilities to describe posterior
distributions and Bayesian models. It includes point-estimates such as
Maximum A Posteriori (MAP), measures of dispersion (Highest Density
Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and
indices used for null-hypothesis testing (such as ROPE percentage, pd
and Bayes factors). References: Makowski et al. (2021) <doi:10.21105/joss.01541>.
Author: Dominique Makowski [aut, cre] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Micah K. Wilson [aut] ,
Brenton M. Wiernik [aut] ,
Paul-Christian Buerkner [rev],
Tristan Mahr [rev] ,
Henrik Singmann [ctb] ,
Quentin F. Gron [...truncated...]
Maintainer: Dominique Makowski <officialeasystats@gmail.com>
Diff between bayestestR versions 0.17.0 dated 2025-08-29 and 0.18.0 dated 2026-05-21
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bayestestR-0.18.0/bayestestR/build/partial.rdb |binary bayestestR-0.18.0/bayestestR/build/vignette.rds |binary bayestestR-0.18.0/bayestestR/man/bayesfactor.Rd | 2 bayestestR-0.18.0/bayestestR/man/bayesfactor_inclusion.Rd | 37 - bayestestR-0.18.0/bayestestR/man/bayesfactor_methods.Rd |only bayestestR-0.18.0/bayestestR/man/bayesfactor_models.Rd | 99 ++ bayestestR-0.18.0/bayestestR/man/bayesfactor_parameters.Rd | 89 +- bayestestR-0.18.0/bayestestR/man/bayesfactor_restricted.Rd | 91 +- bayestestR-0.18.0/bayestestR/man/bci.Rd | 34 bayestestR-0.18.0/bayestestR/man/check_prior.Rd | 2 bayestestR-0.18.0/bayestestR/man/ci.Rd | 10 bayestestR-0.18.0/bayestestR/man/convert_bayesian_as_frequentist.Rd | 2 bayestestR-0.18.0/bayestestR/man/describe_posterior.Rd | 11 bayestestR-0.18.0/bayestestR/man/diagnostic_draws.Rd | 5 bayestestR-0.18.0/bayestestR/man/diagnostic_posterior.Rd | 41 - bayestestR-0.18.0/bayestestR/man/display.describe_posterior.Rd | 2 bayestestR-0.18.0/bayestestR/man/distribution.Rd | 5 bayestestR-0.18.0/bayestestR/man/effective_sample.Rd | 9 bayestestR-0.18.0/bayestestR/man/equivalence_test.Rd | 12 bayestestR-0.18.0/bayestestR/man/estimate_density.Rd | 2 bayestestR-0.18.0/bayestestR/man/eti.Rd | 36 - bayestestR-0.18.0/bayestestR/man/figures/logo.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-10-1.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-12-1.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-14-1.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-16-1.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-7-1.png |binary bayestestR-0.18.0/bayestestR/man/figures/unnamed-chunk-8-1.png |binary bayestestR-0.18.0/bayestestR/man/hdi.Rd | 36 - bayestestR-0.18.0/bayestestR/man/map_estimate.Rd | 2 bayestestR-0.18.0/bayestestR/man/mcse.Rd | 2 bayestestR-0.18.0/bayestestR/man/mediation.Rd | 4 bayestestR-0.18.0/bayestestR/man/p_direction.Rd | 4 bayestestR-0.18.0/bayestestR/man/p_map.Rd | 2 bayestestR-0.18.0/bayestestR/man/p_significance.Rd | 2 bayestestR-0.18.0/bayestestR/man/p_to_bf.Rd | 2 bayestestR-0.18.0/bayestestR/man/point_estimate.Rd | 2 bayestestR-0.18.0/bayestestR/man/rope.Rd | 13 bayestestR-0.18.0/bayestestR/man/rope_range.Rd | 2 bayestestR-0.18.0/bayestestR/man/sensitivity_to_prior.Rd | 2 bayestestR-0.18.0/bayestestR/man/sexit.Rd | 2 bayestestR-0.18.0/bayestestR/man/si.Rd | 47 - bayestestR-0.18.0/bayestestR/man/simulate_correlation.Rd | 2 bayestestR-0.18.0/bayestestR/man/simulate_simpson.Rd | 2 bayestestR-0.18.0/bayestestR/man/spi.Rd | 4 bayestestR-0.18.0/bayestestR/tests/testthat/test-bayesfactor_models.R | 55 + bayestestR-0.18.0/bayestestR/tests/testthat/test-bayesfactor_restricted.R | 32 bayestestR-0.18.0/bayestestR/tests/testthat/test-blavaan.R | 26 bayestestR-0.18.0/bayestestR/tests/testthat/test-brms.R | 157 +++- bayestestR-0.18.0/bayestestR/tests/testthat/test-describe_posterior.R | 315 +++++++- bayestestR-0.18.0/bayestestR/tests/testthat/test-diagnostic_posterior.R |only bayestestR-0.18.0/bayestestR/tests/testthat/test-rope.R | 35 bayestestR-0.18.0/bayestestR/tests/testthat/test-rstanarm.R | 125 ++- 94 files changed, 3091 insertions(+), 1665 deletions(-)
Title: Tufte's Styles for R Markdown Documents
Description: Provides R Markdown output formats to use Tufte styles for
PDF and HTML output.
Author: Yihui Xie [aut] ,
Christophe Dervieux [ctb, cre] ,
JJ Allaire [aut],
Andrzej Oles [ctb],
Dave Liepmann [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Christophe Dervieux <cderv@posit.co>
Diff between tufte versions 0.14.0 dated 2025-07-29 and 0.15.0 dated 2026-05-21
tufte-0.14.0/tufte/tools |only tufte-0.15.0/tufte/DESCRIPTION | 16 - tufte-0.15.0/tufte/MD5 | 31 +- tufte-0.15.0/tufte/NAMESPACE | 3 tufte-0.15.0/tufte/NEWS.md | 87 ++++- tufte-0.15.0/tufte/R/handout.R | 105 ++++++ tufte-0.15.0/tufte/R/html.R | 48 ++- tufte-0.15.0/tufte/R/utils.R | 123 ++++++-- tufte-0.15.0/tufte/README.md | 2 tufte-0.15.0/tufte/inst/rmarkdown/templates/tufte_handout/patches |only tufte-0.15.0/tufte/man/tufte-package.Rd | 2 tufte-0.15.0/tufte/man/tufte_handout.Rd | 69 ++++ tufte-0.15.0/tufte/tests/testthat/_snaps/new-citeproc-post-3.8 |only tufte-0.15.0/tufte/tests/testthat/_snaps/pandoc-citeproc/html.md | 62 ++-- tufte-0.15.0/tufte/tests/testthat/helpers.R | 21 + tufte-0.15.0/tufte/tests/testthat/resources/refs-natbib.bib |only tufte-0.15.0/tufte/tests/testthat/test-handout.R |only tufte-0.15.0/tufte/tests/testthat/test-html.R | 153 +++++++++- tufte-0.15.0/tufte/tests/testthat/test-pdf.R |only tufte-0.15.0/tufte/tests/testthat/test-utils.R |only 20 files changed, 620 insertions(+), 102 deletions(-)
Title: Data Science Infrastructure for Global Health
Description: Supports global health data analysis, including a
publication-ready 'ggplot2' theme, a 'flextable' defaults helper,
a thin pie chart wrapper, built-in regional country-code datasets
with a WHO region lookup helper, a geometric mean function for
indicator aggregation, and convenience clients for the World
Health Organization Global Health Observatory (GHO) OData API
<https://ghoapi.azureedge.net/api/> and the United Nations
Sustainable Development Goals (SDG) API
<https://unstats.un.org/SDGAPI/swagger/>.
Author: Shanlong Ding [aut, cre]
Maintainer: Shanlong Ding <dings@who.int>
Diff between DSIR versions 0.2.0 dated 2026-04-21 and 0.7.0 dated 2026-05-21
DSIR-0.2.0/DSIR/man/wpro_cty.Rd |only DSIR-0.7.0/DSIR/DESCRIPTION | 39 - DSIR-0.7.0/DSIR/MD5 | 109 ++ DSIR-0.7.0/DSIR/NAMESPACE | 16 DSIR-0.7.0/DSIR/NEWS.md | 379 ++++++++- DSIR-0.7.0/DSIR/R/DSIR-package.R | 25 DSIR-0.7.0/DSIR/R/bind_indicators.R |only DSIR-0.7.0/DSIR/R/clean_schema.R |only DSIR-0.7.0/DSIR/R/data.R | 168 ++++ DSIR-0.7.0/DSIR/R/geomean.R |only DSIR-0.7.0/DSIR/R/ggpie.R | 149 +-- DSIR-0.7.0/DSIR/R/gho.R | 544 ++++++++++++-- DSIR-0.7.0/DSIR/R/iso3_to_m49.R |only DSIR-0.7.0/DSIR/R/iso3_to_region.R |only DSIR-0.7.0/DSIR/R/m49_to_iso3.R |only DSIR-0.7.0/DSIR/R/scale_dsi_col.R |only DSIR-0.7.0/DSIR/R/sdg.R | 392 ++++++++-- DSIR-0.7.0/DSIR/R/sdg_coverage.R |only DSIR-0.7.0/DSIR/R/theme_dsi.R | 304 ++++++- DSIR-0.7.0/DSIR/README.md | 409 ++++++++-- DSIR-0.7.0/DSIR/build |only DSIR-0.7.0/DSIR/data/afro_cty.rda |only DSIR-0.7.0/DSIR/data/amro_cty.rda |only DSIR-0.7.0/DSIR/data/emro_cty.rda |only DSIR-0.7.0/DSIR/data/euro_cty.rda |only DSIR-0.7.0/DSIR/data/pic_cty.rda |only DSIR-0.7.0/DSIR/data/searo_cty.rda |only DSIR-0.7.0/DSIR/data/who_countries.rda |only DSIR-0.7.0/DSIR/data/wpro_cty.rda |binary DSIR-0.7.0/DSIR/inst/doc |only DSIR-0.7.0/DSIR/man/DSIR-package.Rd | 76 + DSIR-0.7.0/DSIR/man/bind_indicators.Rd |only DSIR-0.7.0/DSIR/man/figures/logo.jpg |binary DSIR-0.7.0/DSIR/man/geomean.Rd |only DSIR-0.7.0/DSIR/man/ggpie.Rd | 110 +- DSIR-0.7.0/DSIR/man/gho_clean.Rd |only DSIR-0.7.0/DSIR/man/gho_count.Rd |only DSIR-0.7.0/DSIR/man/gho_coverage.Rd |only DSIR-0.7.0/DSIR/man/gho_data.Rd | 6 DSIR-0.7.0/DSIR/man/gho_dimensions.Rd | 2 DSIR-0.7.0/DSIR/man/gho_has_data.Rd |only DSIR-0.7.0/DSIR/man/gho_indicators.Rd | 83 +- DSIR-0.7.0/DSIR/man/iso3_to_m49.Rd |only DSIR-0.7.0/DSIR/man/iso3_to_region.Rd |only DSIR-0.7.0/DSIR/man/m49_to_iso3.Rd |only DSIR-0.7.0/DSIR/man/pic_cty.Rd |only DSIR-0.7.0/DSIR/man/scale_dsi_col.Rd |only DSIR-0.7.0/DSIR/man/sdg_areas.Rd | 6 DSIR-0.7.0/DSIR/man/sdg_clean.Rd |only DSIR-0.7.0/DSIR/man/sdg_coverage.Rd |only DSIR-0.7.0/DSIR/man/sdg_data.Rd | 25 DSIR-0.7.0/DSIR/man/sdg_goals.Rd | 6 DSIR-0.7.0/DSIR/man/sdg_indicators.Rd | 40 - DSIR-0.7.0/DSIR/man/sdg_targets.Rd | 6 DSIR-0.7.0/DSIR/man/theme_dsi.Rd | 71 + DSIR-0.7.0/DSIR/man/theme_dsi_facet.Rd |only DSIR-0.7.0/DSIR/man/who_countries.Rd |only DSIR-0.7.0/DSIR/man/who_region_vectors.Rd |only DSIR-0.7.0/DSIR/tests/testthat/helper-gho-cache.R |only DSIR-0.7.0/DSIR/tests/testthat/test-bind_indicators.R |only DSIR-0.7.0/DSIR/tests/testthat/test-clean.R |only DSIR-0.7.0/DSIR/tests/testthat/test-flextable_defaults.R | 24 DSIR-0.7.0/DSIR/tests/testthat/test-geomean.R |only DSIR-0.7.0/DSIR/tests/testthat/test-ggpie.R | 13 DSIR-0.7.0/DSIR/tests/testthat/test-gho-availability.R |only DSIR-0.7.0/DSIR/tests/testthat/test-gho-dimensions.R |only DSIR-0.7.0/DSIR/tests/testthat/test-gho-get-mock.R |only DSIR-0.7.0/DSIR/tests/testthat/test-gho.R |only DSIR-0.7.0/DSIR/tests/testthat/test-iso3-to-m49.R |only DSIR-0.7.0/DSIR/tests/testthat/test-iso3_to_region.R |only DSIR-0.7.0/DSIR/tests/testthat/test-m49_to_iso3.R |only DSIR-0.7.0/DSIR/tests/testthat/test-region_vectors.R |only DSIR-0.7.0/DSIR/tests/testthat/test-scale_dsi_col.R |only DSIR-0.7.0/DSIR/tests/testthat/test-sdg-area-resolution.R |only DSIR-0.7.0/DSIR/tests/testthat/test-sdg-coverage.R |only DSIR-0.7.0/DSIR/tests/testthat/test-sdg-get-mock.R |only DSIR-0.7.0/DSIR/tests/testthat/test-sdg-indicators.R |only DSIR-0.7.0/DSIR/tests/testthat/test-sdg-year-filter.R |only DSIR-0.7.0/DSIR/tests/testthat/test-theme-dsi-facet.R |only DSIR-0.7.0/DSIR/tests/testthat/test-theme_dsi.R | 55 + DSIR-0.7.0/DSIR/tests/testthat/test-who_countries.R |only DSIR-0.7.0/DSIR/vignettes |only 82 files changed, 2491 insertions(+), 566 deletions(-)
Title: Client for the Brazilian Foreign Trade Statistics API
('ComexStat')
Description: Interface to the 'ComexStat' API
<https://comexstat.mdic.gov.br/> from the Brazilian Ministry of
Development, Industry, Trade and Services (MDIC). Provides access to
detailed export and import data, including general trade statistics
(1997-present), city-level data, historical data (1989-1996), and
auxiliary tables with product codes (NCM - Nomenclatura Comum do
Mercosul, NBM - Nomenclatura Brasileira de Mercadorias, HS -
Harmonized System), countries, economic classifications (CGCE -
Classificacao por Grandes Categorias Economicas, SITC - Standard
International Trade Classification, ISIC - International Standard
Industrial Classification), and other categories. Uses only 'httr2'
for HTTP requests and 'cli' for console messages.
Author: Andre Leite [aut, cre],
Marcos Wasilew [aut],
Hugo Vasconcelos [aut],
Carlos Amorin [aut],
Diogo Bezerra [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between comexr versions 0.2.1 dated 2026-03-17 and 0.3.0 dated 2026-05-21
DESCRIPTION | 10 ++-- MD5 | 64 ++++++++++++++++-------------- NEWS.md | 51 +++++++++++++++++++++++ R/historical.R | 8 ++- R/query.R | 35 +++++++++------- R/query_city.R | 34 +++++++-------- R/tables.R | 11 ++++- R/tables_classifications.R | 52 ++++++++++-------------- R/utils.R | 81 ++++++++++++++++++++++---------------- README.md | 1 build/vignette.rds |binary inst/doc/auxiliary-tables.R | 5 +- inst/doc/auxiliary-tables.Rmd | 11 +++-- inst/doc/auxiliary-tables.html | 12 +++-- inst/doc/city-profile.R |only inst/doc/city-profile.Rmd |only inst/doc/city-profile.html |only inst/doc/getting-started.Rmd | 34 +++++++-------- inst/doc/getting-started.html | 64 ++++++++++++++++-------------- inst/doc/querying-trade-data.Rmd | 11 +++-- inst/doc/querying-trade-data.html | 15 ++++--- inst/doc/state-trade-profile.R |only inst/doc/state-trade-profile.Rmd |only inst/doc/state-trade-profile.html |only man/comex_export.Rd | 35 +++++++++------- man/comex_filter_values.Rd | 11 ++++- man/comex_historical.Rd | 8 ++- man/comex_import.Rd | 35 +++++++++------- man/comex_isic.Rd | 46 +++++++-------------- man/comex_query.Rd | 35 +++++++++------- man/comex_query_city.Rd | 26 ++++++------ man/comexr-package.Rd | 1 vignettes/auxiliary-tables.Rmd | 11 +++-- vignettes/city-profile.Rmd |only vignettes/getting-started.Rmd | 34 +++++++-------- vignettes/querying-trade-data.Rmd | 11 +++-- vignettes/state-trade-profile.Rmd |only 37 files changed, 439 insertions(+), 313 deletions(-)
Title: Fuzzy Similarity in Species Distributions
Description: Functions to compute fuzzy versions of species occurrence patterns based on presence-absence data (including inverse distance interpolation, trend surface analysis, and prevalence-independent favourability obtained from probability of presence), as well as pair-wise fuzzy similarity (based on fuzzy logic versions of commonly used similarity indices) among those occurrence patterns. Includes also functions for model consensus and comparison (overlap and fuzzy similarity, fuzzy loss, fuzzy gain), and for data preparation, such as obtaining unique abbreviations of species names, defining the background region, cleaning and gridding (thinning) point occurrence data onto raster maps, selecting among (pseudo)absences to address survey bias, converting species lists (long format) to presence-absence tables (wide format), transposing part of a data frame, selecting relevant variables for models, assessing the false discovery rate, or analysing and dealing with multicollinearity. Initially desc [...truncated...]
Author: A. Marcia Barbosa [aut],
Alba Estrada [ctb],
Paul Melloy [ctb],
Jose Carlos Guerrero [fnd],
A. Marcia Barbosa [cre]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between fuzzySim versions 4.50 dated 2026-03-28 and 4.54 dated 2026-05-21
DESCRIPTION | 8 +- MD5 | 34 ++++---- NEWS.md | 189 ++++++++++-------------------------------------- R/cleanCoords.R | 20 +++-- R/gridRecords.R | 9 +- R/multicol.R | 17 ++-- R/partialResp.R | 35 +++++--- data/rotif.env.rda |binary data/rotifers.rda |binary man/biasLayer.Rd | 3 man/cleanCoords.Rd | 18 ++-- man/corSelect.Rd | 2 man/fuzzySim-package.Rd | 4 - man/getRegion.Rd | 13 ++- man/gridRecords.Rd | 3 man/multicol.Rd | 10 +- man/partialResp.Rd | 8 +- man/stepwise.Rd | 12 +-- 18 files changed, 159 insertions(+), 226 deletions(-)
Title: Conducts Analyses Informing Ecosystem Restoration Decisions
Description: Three sets of data and functions for informing ecosystem restoration
decisions, particularly in the context of the U.S. Army Corps of Engineers.
First, model parameters are compiled as a data set and associated metadata
for over 300 habitat suitability models developed by the U.S. Fish and
Wildlife Service (USFWS 1980, <https://www.fws.gov/policy-library/870fw1>).
Second, functions for conducting habitat suitability analyses both for the
models described above as well as generic user-specified model parameterizations.
Third, a suite of decision support tools for conducting cost-effectiveness and
incremental cost analyses (Robinson et al. 1995, IWR Report 95-R-1, U.S.
Army Corps of Engineers).
Author: S. Kyle McKay [aut, cre] ,
Darixa D. Hernandez-Abrams [aut],
Kiara C. Cushway [aut]
Maintainer: S. Kyle McKay <skmckay@gmail.com>
Diff between ecorest versions 2.0.2 dated 2026-03-30 and 2.0.3 dated 2026-05-21
DESCRIPTION | 6 MD5 | 50 +++---- R/BBfinder.R | 12 + R/CEICAplotter.R | 144 +++++++++++---------- R/CEfinder.R | 8 - R/HSIarimean.R | 40 ++++- R/HSIeqtn.R | 352 +++++++++++++++++++++++++++++----------------------- R/HSIgeomean.R | 37 ++++- R/HSImin.R | 36 ++++- R/HSIplotter.R | 9 + R/HSIwarimean.R | 58 ++++++-- R/HUcalc.R | 47 +++++- R/SIcalc.R | 175 ++++++++++++++++--------- R/annualizer.R | 16 +- man/BBfinder.Rd | 6 man/CEICAplotter.Rd | 10 - man/CEfinder.Rd | 4 man/HSIarimean.Rd | 20 ++ man/HSIeqtn.Rd | 56 +++++--- man/HSIgeomean.Rd | 16 +- man/HSImin.Rd | 16 +- man/HSIplotter.Rd | 6 man/HSIwarimean.Rd | 15 +- man/HUcalc.Rd | 17 +- man/SIcalc.Rd | 35 ++--- man/annualizer.Rd | 5 26 files changed, 752 insertions(+), 444 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385>, Wilson (2025) <DOI:10.1002/mrm.30462> and
spectral alignment: Wilson (2018) <DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] ,
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin.wilson111@gmail.com>
Diff between spant versions 4.0.0 dated 2026-05-08 and 4.1.0 dated 2026-05-21
DESCRIPTION | 8 +- MD5 | 20 ++--- NEWS.md | 4 + R/fit_svs.R | 6 - R/fit_svs_edited.R | 6 - inst/doc/spant-intro.html | 132 +++++++++++++++++++------------------- inst/doc/spant-preprocessing.html | 4 - man/fit_svs.Rd | 4 - man/fit_svs_edited.Rd | 4 - src/lsei.f | 4 - tests/testthat/test_qm_sim.R | 2 11 files changed, 100 insertions(+), 94 deletions(-)
Title: Convert Chinese Characters into Hanyu Pinyin
Description: Convert Chinese characters into Hanyu Pinyin (the official
romanization system for Standard Chinese) with support for tones,
toneless output, initials, URL slugs, and valid R variable names.
The package was inspired by the now-orphaned CRAN package 'pinyin'
(archived in April 2026 after the maintainer became unreachable).
'hanyupinyin' is a ground-up rewrite using the authoritative Unicode
Unihan database, a vectorized engine, and modern R practices.
Dictionary data are derived from the Unicode Unihan Database
(Unicode Consortium, 2025) <https://www.unicode.org/reports/tr38/>.
Author: Haoran Cui [aut, cre]
Maintainer: Haoran Cui <hao.ran.cui@ktstat.com>
Diff between hanyupinyin versions 0.1.1 dated 2026-04-22 and 0.1.3 dated 2026-05-21
DESCRIPTION | 6 MD5 | 29 ++-- NAMESPACE | 1 NEWS.md | 19 ++ R/sysdata.rda |binary R/to_pinyin.R | 268 ++++++++++++++++++++++++++++++++++++---- README.md | 43 +++++- man/add_phrase.Rd | 30 +++- man/list_phrases.Rd | 11 + man/to_pinyin.Rd | 15 +- man/to_pinyin_initials.Rd | 7 - man/to_pinyin_marks.Rd |only man/to_pinyin_toneless.Rd | 7 - man/to_slug.Rd | 7 - man/to_varname.Rd | 7 - tests/testthat/test-to_pinyin.R | 48 ++++++- 16 files changed, 426 insertions(+), 72 deletions(-)
Title: Retrieve Data from 'Banco de España'
Description: Tools for retrieving time series data from 'Banco de España'
('BdE') as 'tibble' objects. 'Banco de España' is the national central
bank and, within the framework of the Single Supervisory Mechanism
('SSM'), the supervisor of the Spanish banking system alongside the
European Central Bank. This package is not sponsored, endorsed or
administered by 'Banco de España'.
Author: Diego H. Herrero [aut, cre, cph]
Maintainer: Diego H. Herrero <dev.dieghernan@gmail.com>
Diff between tidyBdE versions 0.6.0 dated 2026-03-23 and 0.6.1 dated 2026-05-21
DESCRIPTION | 21 MD5 | 96 +-- NAMESPACE | 78 +- NEWS.md | 150 ++-- R/bde_check_access.R | 122 +-- R/bde_tidy_palettes.R | 39 - R/catalogs.R | 793 ++++++++++++------------- R/data.R | 76 +- R/indicators.R | 368 +++++------ R/scales.R | 23 R/series.R | 914 ++++++++++++++--------------- R/superseded.R | 101 +-- R/theme_tidybde.R | 214 +++--- R/tidyBdE-package.R | 18 R/utils.R | 588 +++++++++--------- README.md | 93 +- build/vignette.rds |binary data/bde_ind_db.rda |binary inst/CITATION | 36 - inst/COPYRIGHTS | 30 inst/WORDLIST | 90 ++ inst/doc/tidyBdE.html | 86 +- inst/doc/tidyBdE.qmd | 60 - inst/schemaorg.json | 10 man/bde_catalog_load.Rd | 136 ++-- man/bde_catalog_search.Rd | 130 ++-- man/bde_catalog_update.Rd | 115 +-- man/bde_check_access.Rd | 43 - man/bde_ind_db.Rd | 98 +-- man/bde_indicators.Rd | 168 ++--- man/bde_pals.Rd | 66 +- man/bde_parse_dates.Rd | 118 +-- man/bde_series_full_load.Rd | 159 ++--- man/bde_series_load.Rd | 264 ++++---- man/bde_tidy_palettes.Rd | 112 +-- man/scales_bde.Rd | 195 +++--- man/theme_tidybde.Rd | 147 ++-- man/tidyBdE-package.Rd | 57 - tests/testthat.R | 24 tests/testthat/_snaps/bde_tidy_palettes.md | 30 tests/testthat/_snaps/superseded.md | 36 - tests/testthat/test-bde_tidy_palettes.R | 90 +- tests/testthat/test-catalogs.R | 218 +++--- tests/testthat/test-indicators.R | 70 +- tests/testthat/test-parse_dates.R | 43 - tests/testthat/test-scales.R | 194 +++--- tests/testthat/test-series.R | 257 ++++---- tests/testthat/test-superseded.R | 32 - vignettes/tidyBdE.qmd | 60 - 49 files changed, 3461 insertions(+), 3407 deletions(-)
Title: Nanosecond-Resolution Time Support for R
Description: Full 64-bit resolution date and time functionality with
nanosecond granularity is provided, with easy transition to and from
the standard 'POSIXct' type. Three additional classes offer interval,
period and duration functionality for nanosecond-resolution timestamps.
Author: Dirk Eddelbuettel [aut, cre] ,
Leonardo Silvestri [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between nanotime versions 0.3.14 dated 2026-04-22 and 0.3.15 dated 2026-05-21
ChangeLog | 24 ++++++++++++++++++++---- DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++++ src/rounding.cpp | 4 ++-- tools/configure.R | 8 +++++--- 7 files changed, 46 insertions(+), 19 deletions(-)
Title: Boundary Adaptive Local Polynomial Conditional Density Estimator
Description: Tools for estimation and inference of conditional densities, derivatives and functions. This is the companion software for Cattaneo, Chandak, Jansson and Ma (2024) <doi:10.3150/23-BEJ1711>.
Author: Matias D. Cattaneo [aut, cre],
Rajita Chandak [aut],
Michael Jansson [aut],
Xinwei Ma [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between lpcde versions 0.1.6 dated 2025-02-25 and 1.0.0 dated 2026-05-21
DESCRIPTION | 42 MD5 | 114 - NAMESPACE | 36 NEWS.md | 71 - R/RcppExports.R | 26 R/lpbwcde.R | 560 ++++---- R/lpbwcde_fns.R | 1828 +++++++++++++-------------- R/lpbwcde_methods.R | 404 +++--- R/lpcde-package.R | 10 R/lpcde.R | 728 +++++------ R/lpcde_fns.R | 1219 ++++++++---------- R/lpcde_methods.R | 1912 ++++++++++++++--------------- R/matrices.R | 379 +++-- R/utils.R | 542 ++++---- README.md | 105 - build/partial.rdb |binary inst/REFERENCES.bib | 78 - man/S_exact.Rd | 46 man/S_x.Rd | 44 man/T_x.Rd | 52 man/T_y.Rd | 44 man/T_y_exact.Rd | 52 man/b_x.Rd | 48 man/basis_vec.Rd | 52 man/bw_irot.Rd | 72 - man/bw_rot.Rd | 72 - man/c_exact.Rd | 52 man/c_x.Rd | 50 man/check_inv.Rd | 36 man/coef.lpbwcde.Rd | 87 - man/coef.lpcde.Rd | 90 - man/confint.lpcde.Rd | 142 +- man/cov_hat.Rd | 80 - man/fhat.Rd | 72 - man/int_val.Rd | 50 man/kernel_eval.Rd | 40 man/lpbwcde.Rd | 208 +-- man/lpcde.Rd | 310 ++-- man/lpcde_fn.Rd | 122 - man/mvec.Rd | 34 man/normal_dgps.Rd | 42 man/plot.lpcde.Rd | 262 +-- man/poly_base.Rd | 50 man/print.lpbwcde.Rd | 90 - man/print.lpcde.Rd | 88 - man/print_all_sumC.Rd | 38 man/summary.lpbwcde.Rd | 94 - man/summary.lpcde.Rd | 100 - man/vcov.lpcde.Rd | 98 - src/Makevars | 5 src/Makevars.win | 5 tests/fixtures |only tests/test.R | 98 - tests/testthat.R | 8 tests/testthat/test-lpbwcde.R | 88 - tests/testthat/test-lpcde.R | 218 +-- tests/testthat/test-matrices.R | 22 tests/testthat/test-numerical-regression.R |only tests/testthat/test-utils.R | 70 - 59 files changed, 5582 insertions(+), 5703 deletions(-)
Title: Convert Digital Images into 'SpatRaster' Objects
Description: Create 'SpatRaster' objects, as defined by the 'terra'
package, from digital images using a spatial object as a geographic
reference. Supported inputs include objects from the 'sf', 'terra' and
'stars' packages. The main function is an S3 generic, so other
packages can provide methods for additional spatial classes.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between rasterpic versions 0.4.0 dated 2026-03-21 and 0.5.0 dated 2026-05-21
rasterpic-0.4.0/rasterpic/tests/testthat/_snaps/bbox.md |only rasterpic-0.5.0/rasterpic/DESCRIPTION | 28 rasterpic-0.5.0/rasterpic/MD5 | 74 rasterpic-0.5.0/rasterpic/NAMESPACE | 20 rasterpic-0.5.0/rasterpic/NEWS.md | 78 rasterpic-0.5.0/rasterpic/R/asp_ratio.R | 75 rasterpic-0.5.0/rasterpic/R/rasterpic-package.R | 14 rasterpic-0.5.0/rasterpic/R/rasterpic_img.R | 907 ++++++---- rasterpic-0.5.0/rasterpic/R/test_helpers.R | 5 rasterpic-0.5.0/rasterpic/R/utils.R | 70 rasterpic-0.5.0/rasterpic/README.md | 64 rasterpic-0.5.0/rasterpic/build/vignette.rds |binary rasterpic-0.5.0/rasterpic/inst/CITATION | 36 rasterpic-0.5.0/rasterpic/inst/WORDLIST | 36 rasterpic-0.5.0/rasterpic/inst/doc/rasterpic.R | 13 rasterpic-0.5.0/rasterpic/inst/doc/rasterpic.html | 51 rasterpic-0.5.0/rasterpic/inst/doc/rasterpic.qmd | 53 rasterpic-0.5.0/rasterpic/inst/schemaorg.json | 8 rasterpic-0.5.0/rasterpic/man/asp_ratio.Rd | 61 rasterpic-0.5.0/rasterpic/man/rasterpic-package.Rd | 57 rasterpic-0.5.0/rasterpic/man/rasterpic_img.Rd | 546 +++--- rasterpic-0.5.0/rasterpic/tests/testthat/_snaps/errors_messages.md | 24 rasterpic-0.5.0/rasterpic/tests/testthat/_snaps/nlayers.md | 8 rasterpic-0.5.0/rasterpic/tests/testthat/_snaps/online.md | 3 rasterpic-0.5.0/rasterpic/tests/testthat/_snaps/s3.md |only rasterpic-0.5.0/rasterpic/tests/testthat/test-alignment.R | 133 - rasterpic-0.5.0/rasterpic/tests/testthat/test-asp_ratio.R | 6 rasterpic-0.5.0/rasterpic/tests/testthat/test-bbox.R | 125 - rasterpic-0.5.0/rasterpic/tests/testthat/test-crop_mask.R | 479 ++--- rasterpic-0.5.0/rasterpic/tests/testthat/test-errors_messages.R | 220 +- rasterpic-0.5.0/rasterpic/tests/testthat/test-expand.R | 24 rasterpic-0.5.0/rasterpic/tests/testthat/test-fileformat.R | 2 rasterpic-0.5.0/rasterpic/tests/testthat/test-nlayers.R | 5 rasterpic-0.5.0/rasterpic/tests/testthat/test-online.R | 54 rasterpic-0.5.0/rasterpic/tests/testthat/test-s3.R |only rasterpic-0.5.0/rasterpic/tests/testthat/test-sfg.R | 130 - rasterpic-0.5.0/rasterpic/tests/testthat/test-spatextent.R | 110 - rasterpic-0.5.0/rasterpic/tests/testthat/test-stars.R |only rasterpic-0.5.0/rasterpic/tests/testthat/test-vector.R | 125 - rasterpic-0.5.0/rasterpic/vignettes/rasterpic.qmd | 53 40 files changed, 2022 insertions(+), 1675 deletions(-)
Title: Weighting and Estimation for Panel Data with Non-Response
Description: Functions to calculate weights, estimates of changes and corresponding variance estimates for panel data with non-response. Partially overlapping samples are handled. Initially, weights are calculated by linear calibration. By default, the 'survey' package is used for this purpose. It is also possible to use 'ReGenesees', which can be installed from <https://github.com/DiegoZardetto/ReGenesees>. Variances of linear combinations (changes and averages) and ratios are calculated from a covariance matrix based on residuals according to the calibration model. The methodology was presented at the conference, The Use of R in Official Statistics, and is described in Langsrud (2016) <http://www.revistadestatistica.ro/wp-content/uploads/2016/06/RRS2_2016_A021.pdf>.
Author: Oeyvind Langsrud [aut, cre]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between CalibrateSSB versions 1.3.0 dated 2020-08-04 and 1.4.0 dated 2026-05-21
DESCRIPTION | 25 +- MD5 | 46 ++--- NEWS.md | 11 + R/CalibrateSSB-package.R | 3 R/CalibrateSSB.R | 62 ++++++- R/etosFunctions.R | 8 R/impVekt.R | 4 R/lagVekter.R | 13 - R/setAndGetTotal.R | 2 man/AkuData.Rd | 54 +++--- man/CalSSBobj.Rd | 156 ++++++++--------- man/CalSSBobjReGenesees.Rd | 126 +++++++------- man/CalibrateSSB-package.Rd | 82 +++++---- man/CalibrateSSB.Rd | 385 +++++++++++++++++++++++--------------------- man/CalibrateSSBpanel.Rd | 60 +++--- man/CrossStrata.Rd | 66 +++---- man/LinCombMatrix.Rd | 184 ++++++++++----------- man/MatchVarNames.Rd | 60 +++--- man/OrderedVarNames.Rd | 50 ++--- man/PanelEstimation.Rd | 230 +++++++++++++------------- man/WideFromCalibrate.Rd | 74 ++++---- man/print.calSSB.Rd | 44 ++--- man/print.calSSBwide.Rd | 44 ++--- man/testDataBasis.Rd | 22 +- 24 files changed, 960 insertions(+), 851 deletions(-)
Title: Conduct Additional Modeling and Analysis for 'seminr'
Description: Supplementary tools for evaluating and validating partial least
squares structural equation models estimated with 'seminr'. Provides methods
for predictive model assessment, importance-performance analysis with
necessary condition testing, overfitting diagnostics, measurement model
verification, mediator contribution analysis, unobserved heterogeneity
detection via latent class and prediction-oriented segmentation, and
congruence coefficient testing. All functions accept estimated 'seminr'
model objects and return results with print, summary, and plot methods.
Author: Soumya Ray [aut, ths],
Nicholas Patrick Danks [aut, cre]
Maintainer: Nicholas Patrick Danks <nicholasdanks@hotmail.com>
Diff between seminrExtras versions 1.0.0 dated 2026-04-29 and 1.0.1 dated 2026-05-21
DESCRIPTION | 7 MD5 | 28 +-- NEWS.md | 10 + inst/doc/SEMinRExtras.R | 11 - inst/doc/SEMinRExtras.Rmd | 11 - inst/doc/SEMinRExtras.html | 75 ++++------ tests/testthat/test-cipma-comprehensive.R | 6 tests/testthat/test-coa.R | 4 tests/testthat/test-cta.R | 3 tests/testthat/test-cvpat-comprehensive.R | 115 +++++---------- tests/testthat/test-cvpat.R | 221 ++++++++++++++---------------- tests/testthat/test-fimix.R | 7 tests/testthat/test-pcm.R | 1 tests/testthat/test-pos.R | 3 vignettes/SEMinRExtras.Rmd | 11 - 15 files changed, 227 insertions(+), 286 deletions(-)
Title: qPCR Data Analysis
Description: Tools for qPCR data analysis using Delta Ct and Delta Delta Ct methods, including t-test, Wilcoxon-test, ANOVA models, and publication-ready visualizations. The package supports multiple target, and multiple reference genes, and uses a calculation framework adopted from Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods.
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <mirzaghaderi@gmail.com>
Diff between rtpcr versions 2.1.7 dated 2026-04-13 and 2.1.8 dated 2026-05-21
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS.md | 5 +++++ R/meanTech.R | 12 ++++-------- vignettes/--find-assets.html |only 5 files changed, 16 insertions(+), 14 deletions(-)
Title: Estimate Parameters of Mixtures of Logistic Regressions
Description: Mixture of logistic regressions parameters (H)estimation with
(U)spectral methods. The main methods take d-dimensional inputs and a vector
of binary outputs, and return parameters according to the GLMs mixture model
(General Linear Model). For more details see chapter 3 in the PhD thesis of
Mor-Absa Loum: <https://theses.fr/s156435>, available here
<https://theses.hal.science/tel-01877796/document>.
Author: Benjamin Auder [aut, cre],
Mor-Absa Loum [aut]
Maintainer: Benjamin Auder <benjamin.auder@universite-paris-saclay.fr>
This is a re-admission after prior archival of version 1.0-4 dated 2023-02-09
Diff between morpheus versions 1.0-4 dated 2023-02-09 and 1.0-5 dated 2026-05-21
DESCRIPTION | 26 ++++++--- LICENSE | 4 - MD5 | 45 +++++++++------- NAMESPACE | 3 + R/A_NAMESPACE.R | 2 R/multiRun.R | 32 ++++++++--- R/optimParams.R | 2 R/plot.R | 83 ++++++++++++++++--------------- R/utils.R | 30 +++++++++++ build/partial.rdb |binary inst |only man/multiRun.Rd | 20 ++++--- man/normalize.Rd | 1 man/optimParams.Rd | 2 man/plotBox.Rd | 18 +++--- man/plotCoefs.Rd | 19 +++---- man/plotHist.Rd | 17 +++--- man/pvalue.Rd |only tests/testthat/test-alignMatrices.R | 2 tests/testthat/test-computeMu.R | 1 tests/testthat/test-hungarianAlgorithm.R | 1 tests/testthat/test-jointDiag.R | 2 tests/testthat/test-optimParams.R | 2 23 files changed, 197 insertions(+), 115 deletions(-)
Title: Case Classification and Selection Based on Regression Results
Description: Researchers doing a mixed-methods analysis (nested analysis as
developed by Lieberman (2005) <doi:10.1017/S0003055405051762>) can
use the package for the classification of cases and case selection using
results of a linear regression. One can designate cases
as typical, deviant, extreme and pathway case and use different case
selection strategies for the choice of a case belonging to one of
these types.
Author: Ingo Rohlfing [aut, cre]
Maintainer: Ingo Rohlfing <ingo.rohlfing@uni-passau.de>
This is a re-admission after prior archival of version 0.1.0 dated 2020-06-03
Diff between MMRcaseselection versions 0.1.0 dated 2020-06-03 and 0.2.0 dated 2026-05-21
DESCRIPTION | 18 - MD5 | 54 ++- NEWS.md |only R/classification.R | 14 - R/deviant.R | 8 R/extreme.R | 8 R/most_typical.R | 4 R/pathway.R | 10 README.md | 32 +- build/partial.rdb |only build/vignette.rds |binary inst/doc/Classification-as-typical-and-deviant.R | 6 inst/doc/Classification-as-typical-and-deviant.html | 277 ++++++++++++-------- inst/doc/Extreme-case.R | 2 inst/doc/Extreme-case.html | 265 +++++++++++-------- inst/doc/Most-typical-and-most-deviant.R | 2 inst/doc/Most-typical-and-most-deviant.html | 213 +++++++++------ inst/doc/Pathway-case.R | 6 inst/doc/Pathway-case.html | 254 ++++++++++++------ man/extreme_on_x.Rd | 2 man/extreme_on_y.Rd | 2 man/most_deviant.Rd | 2 man/most_typical.Rd | 2 man/pathway.Rd | 4 man/pathway_xvr.Rd | 2 man/predint.Rd | 2 man/predint_plot.Rd | 4 man/residstd.Rd | 2 man/residstd_plot.Rd | 2 29 files changed, 750 insertions(+), 447 deletions(-)
More information about MMRcaseselection at CRAN
Permanent link
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb] ,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between insight versions 1.5.0 dated 2026-04-14 and 1.5.1 dated 2026-05-21
DESCRIPTION | 10 MD5 | 74 +++---- NAMESPACE | 24 ++ NEWS.md | 34 +++ R/find_algorithm.R | 10 R/find_parameters_bayesian.R | 15 + R/format_bf.R | 51 +++- R/format_table.R | 7 R/get_data.R | 14 + R/get_df.R | 8 R/get_df_kenward-rogers.R | 199 ++++++++++++------- R/get_parameters_bayesian.R | 14 + R/get_response.R | 12 + R/get_varcov.R | 41 +-- R/get_varcov_fpc.R |only R/get_varcov_sandwich.R | 19 + R/has_intercept.R | 19 + R/standardize_column_order.R | 4 R/standardize_names.R | 19 - R/utils_model_info.R | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/display.html | 370 ++++++++++++++++++------------------ man/format_bf.Rd | 6 man/get_df.Rd | 8 man/get_predicted.Rd | 15 + man/get_predicted_ci.Rd | 15 + man/get_varcov.Rd | 20 + man/has_intercept.Rd | 4 man/insight-package.Rd | 1 man/vcovFPC.Rd |only tests/testthat/test-format.R | 32 +++ tests/testthat/test-format_table.R | 18 - tests/testthat/test-get_simulated.R | 1 tests/testthat/test-has_intercept.R | 49 +++- tests/testthat/test-htest.R | 34 +++ tests/testthat/test-mira.R |only tests/testthat/test-model_info.R | 2 tests/testthat/test-rstanarm.R | 3 tests/testthat/test-vcov_fpc.R |only 40 files changed, 757 insertions(+), 401 deletions(-)
Title: Coefficient of Variation (CV) with Confidence Intervals (CI)
Description: Provides some easy-to-use functions and classes to calculate
variability measures such as coefficient of variation with confidence
intervals provided with all available methods. References are
'Panichkitkosolkul' (2013) <doi:10.1155/2013/324940>,
'Altunkaynak' & 'Gamgam' (2018) <doi:10.1080/03610918.2018.1435800>,
'Albatineh', 'Kibria', Wilcox & 'Zogheib' (2014) <doi:10.1080/02664763.2013.847405>.
Author: Maani Beigy [aut, cre]
Maintainer: Maani Beigy <manibeygi@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2019-08-06
Diff between cvcqv versions 1.0.0 dated 2019-08-06 and 1.0.3 dated 2026-05-21
DESCRIPTION | 26 MD5 | 105 NAMESPACE | 42 NEWS.md | 72 R/BootCoefQuartVar.R | 409 +-- R/BootCoefVar.R | 400 +-- R/CoefQuartVar.R | 348 +- R/CoefQuartVarCI.R | 760 +++--- R/CoefVar.R | 210 - R/CoefVarCI.R | 3336 +++++++++++++-------------- R/SampleQuantiles.R | 258 +- R/cqv_versatile.R | 802 +++--- R/cv_versatile.R | 2495 ++++++++++---------- README.md | 322 +- build/partial.rdb |only build/vignette.rds |binary inst/doc/cqv_versatile.R | 732 ++--- inst/doc/cqv_versatile.Rmd | 824 +++--- inst/doc/cqv_versatile.html | 933 ++++--- inst/doc/cv_versatile.R | 2532 ++++++++++---------- inst/doc/cv_versatile.Rmd | 2812 +++++++++++----------- inst/doc/cv_versatile.html | 1407 ++++++----- man/BootCoefQuartVar.Rd | 94 man/BootCoefVar.Rd | 92 man/CoefQuartVar.Rd | 80 man/CoefQuartVarCI.Rd | 166 - man/CoefVar.Rd | 84 man/CoefVarCI.Rd | 250 +- man/SampleQuantiles.Rd | 76 man/cqv_versatile.Rd | 154 - man/cv_versatile.Rd | 232 - man/figures/sticker.svg | 236 - tests/testthat.R | 8 tests/testthat/test_state_BootCoefQuartVar.R | 278 +- tests/testthat/test_state_BootCoefVar.R | 252 +- tests/testthat/test_state_CoefQuartVar.R | 348 +- tests/testthat/test_state_CoefQuartVarCI.R | 352 +- tests/testthat/test_state_CoefVar.R | 60 tests/testthat/test_state_CoefVarCI.R | 2092 ++++++++-------- tests/testthat/test_state_R.R | 102 tests/testthat/test_state_SampleQuantiles.R | 84 tests/testthat/test_state_alpha.R | 118 tests/testthat/test_state_cqv_versatile.R | 630 ++--- tests/testthat/test_state_cv_versatile.R | 1795 +++++++------- tests/testthat/test_state_digits.R | 428 +-- tests/testthat/test_state_na_rm.R | 194 - tests/testthat/test_state_names.R | 64 tests/testthat/test_state_probs.R | 120 tests/testthat/test_state_type.R | 34 tests/testthat/test_state_x.R | 410 +-- vignettes/apa.csl | 1550 ++++++------ vignettes/cqv_versatile.Rmd | 824 +++--- vignettes/cv_versatile.Rmd | 2812 +++++++++++----------- vignettes/cvcqv.bib | 282 +- 54 files changed, 16731 insertions(+), 16395 deletions(-)
More information about CopernicusDataspace at CRAN
Permanent link
Title: Oncology Extension Package for ADaM in 'R' Asset Library
Description: Programming oncology specific Clinical Data Interchange
Standards Consortium (CDISC) compliant Analysis Data Model (ADaM)
datasets in 'R'. ADaM datasets are a mandatory part of any New Drug or
Biologics License Application submitted to the United States Food and
Drug Administration (FDA). Analysis derivations are implemented in
accordance with the "Analysis Data Model Implementation Guide" (CDISC
Analysis Data Model Team (2021),
<https://www.cdisc.org/standards/foundational/adam>). The package is
an extension package of the 'admiral' package.
Author: Stefan Bundfuss [aut, cre],
Amit Jain [aut],
Vinh Nguyen [aut],
Olga Starostecka [aut],
Kiran Peddamudium [aut],
Tomoyuki Namai [aut],
Ross Farrugia [aut],
Yirong Cao [ctb],
Ashwini Weber [ctb],
F. Hoffmann-La Roche AG [cph, fnd],
GlaxoSmithKline LLC [...truncated...]
Maintainer: Stefan Bundfuss <stefan.bundfuss@external.roche.com>
Diff between admiralonco versions 1.4.0 dated 2026-01-29 and 1.4.1 dated 2026-05-21
DESCRIPTION | 51 +++++++------ MD5 | 80 ++++++++++----------- NEWS.md | 9 ++ R/admiralonco-package.R | 33 ++++++--- README.md | 2 build/vignette.rds |binary inst/WORDLIST | 4 - inst/doc/admiralonco.html | 13 +-- inst/doc/adrs.Rmd | 2 inst/doc/adrs.html | 131 +++++++++++++++++++---------------- inst/doc/adrs_basic.Rmd | 2 inst/doc/adrs_basic.html | 41 +++++------ inst/doc/adrs_gcig.Rmd | 2 inst/doc/adrs_gcig.html | 132 +++++++++++++++++++----------------- inst/doc/adrs_imwg.html | 18 +++- inst/doc/adrs_pcwg3.html | 135 +++++++++++++++++++------------------ inst/doc/adtr.Rmd | 2 inst/doc/adtr.html | 7 + inst/doc/adtte.Rmd | 4 - inst/doc/adtte.html | 9 +- inst/doc/irecist.html | 5 - inst/doc/nactdt.html | 5 - man/admiralonco-package.Rd | 3 man/date_source.Rd | 14 +-- man/derive_param_bor.Rd | 14 +-- man/derive_param_clinbenefit.Rd | 14 +-- man/derive_param_confirmed_bor.Rd | 14 +-- man/derive_param_confirmed_resp.Rd | 14 +-- man/derive_param_response.Rd | 14 +-- man/event_objects.Rd | 1 man/figures/gsk_logo.png |binary man/figures/roche_logo.png |binary man/filter_pd.Rd | 14 +-- man/get_crpr_dataset.Rd | 2 man/signal_crpr.Rd | 2 man/tte_source_objects.Rd | 1 vignettes/adrs.Rmd | 2 vignettes/adrs_basic.Rmd | 2 vignettes/adrs_gcig.Rmd | 2 vignettes/adtr.Rmd | 2 vignettes/adtte.Rmd | 4 - 41 files changed, 431 insertions(+), 375 deletions(-)
Title: Fetch Data from Yahoo Finance API
Description: Obtain historical and near real time data related to stocks, index
and currencies from the Yahoo Finance API. This package is community maintained
and is not officially supported by 'Yahoo'. The accuracy of data is only as
correct as provided on <https://finance.yahoo.com/>.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between yahoofinancer versions 0.4.0 dated 2024-11-14 and 0.5.0 dated 2026-05-21
yahoofinancer-0.4.0/yahoofinancer/R/index.R |only yahoofinancer-0.4.0/yahoofinancer/man/Index-class.Rd |only yahoofinancer-0.5.0/yahoofinancer/DESCRIPTION | 12 yahoofinancer-0.5.0/yahoofinancer/MD5 | 47 yahoofinancer-0.5.0/yahoofinancer/NAMESPACE | 3 yahoofinancer-0.5.0/yahoofinancer/NEWS.md | 18 yahoofinancer-0.5.0/yahoofinancer/R/base.R |only yahoofinancer-0.5.0/yahoofinancer/R/indice.R |only yahoofinancer-0.5.0/yahoofinancer/R/others.R | 41 yahoofinancer-0.5.0/yahoofinancer/R/ticker.R | 475 +--------- yahoofinancer-0.5.0/yahoofinancer/R/tickers.R |only yahoofinancer-0.5.0/yahoofinancer/R/utils.R | 23 yahoofinancer-0.5.0/yahoofinancer/README.md | 20 yahoofinancer-0.5.0/yahoofinancer/man/Indice-class.Rd |only yahoofinancer-0.5.0/yahoofinancer/man/Ticker-class.Rd | 289 +----- yahoofinancer-0.5.0/yahoofinancer/man/Tickers.Rd |only yahoofinancer-0.5.0/yahoofinancer/man/YahooFinanceBase-class.Rd |only yahoofinancer-0.5.0/yahoofinancer/man/validate.Rd | 40 yahoofinancer-0.5.0/yahoofinancer/tests/testthat/helper-mocks.R |only yahoofinancer-0.5.0/yahoofinancer/tests/testthat/samples |only yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-currency.R | 86 + yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-index-success.R |only yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-index.R | 84 + yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-market-summary.R | 1 yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-ticker-success.R |only yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-ticker.R | 205 +++- yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-tickers.R |only yahoofinancer-0.5.0/yahoofinancer/tests/testthat/test-utils.R | 52 - 28 files changed, 585 insertions(+), 811 deletions(-)
Title: 'SAS'-Style 'PROC FORMAT' for R
Description: Provides 'SAS' 'PROC FORMAT'-like functionality for creating and applying
value formats in R. Supports discrete and range-based mapping of values to labels,
reverse formatting (invalue), date/time/datetime formatting with built-in 'SAS' format
names, multi-label formats, expression labels evaluated at apply-time,
case-insensitive matching, import/export of format definitions, and proper handling
of missing values (NA, NULL, NaN).
Author: Vladimir Larchenko [aut, cre],
Igor Aleschenkov [aut]
Maintainer: Vladimir Larchenko <vladimir.larchenko@keystatsolutions.com>
Diff between ksformat versions 0.4.2 dated 2026-03-28 and 0.7.1 dated 2026-05-21
DESCRIPTION | 11 MD5 | 71 + NAMESPACE | 9 NEWS.md |only R/cheatsheet.R | 2 R/format_apply.R | 608 +++++++++++++-- R/format_create.R | 301 +++++++ R/format_invalue.R | 93 ++ R/format_library_app.R |only R/format_parse.R | 467 +++++++++++ R/ksformat-package.R | 2 R/utilities.R | 998 ++++++++++++++++++++++++ README.md | 18 build/vignette.rds |binary inst/doc/ksformat-Cheat-Sheet.pdf |binary inst/doc/ksformat-cheatsheet.html | 173 +--- inst/doc/usage_examples.R | 508 ++++++++++++ inst/doc/usage_examples.Rmd | 771 +++++++++++++++++++ inst/doc/usage_examples.html | 1083 ++++++++++++++++++++++++-- inst/rstudio |only man/dot-expr_parse_cache.Rd |only man/dot-format_date_bound.Rd |only man/dot-format_library.Rd | 4 man/dot-sas_format_defaults.Rd | 4 man/fimport.Rd | 1 man/finput.Rd | 11 man/finputk.Rd |only man/flist.Rd |only man/fmap.Rd |only man/fmap_ranges.Rd |only man/fmap_strata.Rd |only man/fmap_to_ranges.Rd |only man/fnew.Rd | 94 ++ man/fnew_bid.Rd | 6 man/format_library_app.Rd |only man/fparse.Rd | 24 man/fprint.Rd | 5 man/fputk.Rd |only man/franges.Rd |only man/ksformat-package.Rd | 3 man/ksformat_cheatsheet.Rd | 2 tests/testthat/test-format-library-app.R |only tests/testthat/test-formats.R | 1245 +++++++++++++++++++++++++++++++ vignettes/usage_examples.Rmd | 771 +++++++++++++++++++ 44 files changed, 6900 insertions(+), 385 deletions(-)
Title: Euclidean Distance-Optimized Data Transformation
Description: A data transformation method which takes into account the special property of scale non-invariance with a breakpoint at 1 of the Euclidean distance.
Author: Jorn Lotsch [aut, cre] ,
Alfred Ultsch [aut]
Maintainer: Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>
Diff between EDOtrans versions 0.2.5 dated 2024-04-14 and 0.3.5 dated 2026-05-21
DESCRIPTION | 26 ++++- MD5 | 17 ++- NAMESPACE | 6 + R/EDOtrans.R | 144 ++++++++++++++++++++++++------ R/RcppExports.R |only R/combinedModesParameters.R | 27 ++++- R/get_seed.R | 205 +++++++++++++++++++++++++++++++++++++++----- inst |only man/EDOtrans.Rd | 31 ++++-- man/get_seed.Rd |only src |only 11 files changed, 381 insertions(+), 75 deletions(-)
Title: Sequential Trial Emulation
Description: Implementation of sequential trial emulation for the analysis of observational databases.
The 'SEQTaRget' software accommodates time-varying treatments and confounders, as well as binary
and failure time outcomes. 'SEQTaRget' allows to compare both static and dynamic strategies,
can be used to estimate observational analogs of intention-to-treat
and per-protocol effects, and can adjust for potential selection bias
induced by losses-to-follow-up. (Paper to come).
Author: Ryan O'Dea [aut, cre] ,
Alejandro Szmulewicz [aut] ,
Tom Palmer [aut] ,
Paul Madley-Dowd [aut] ,
Miguel Hernan [aut] ,
The President and Fellows of Harvard College [cph]
Maintainer: Ryan O'Dea <ryan.odea@psi.ch>
Diff between SEQTaRget versions 1.4.1 dated 2026-03-31 and 1.4.2 dated 2026-05-21
SEQTaRget-1.4.1/SEQTaRget/R/internal_fatglmHelpers.R |only SEQTaRget-1.4.1/SEQTaRget/man/format.time.Rd |only SEQTaRget-1.4.2/SEQTaRget/DESCRIPTION | 14 SEQTaRget-1.4.2/SEQTaRget/MD5 | 122 + SEQTaRget-1.4.2/SEQTaRget/NAMESPACE | 3 SEQTaRget-1.4.2/SEQTaRget/NEWS.md | 23 SEQTaRget-1.4.2/SEQTaRget/R/SEQTaRget-package.R |only SEQTaRget-1.4.2/SEQTaRget/R/SEQestimate.R | 13 SEQTaRget-1.4.2/SEQTaRget/R/SEQexpand.R | 32 SEQTaRget-1.4.2/SEQTaRget/R/SEQopts.R | 38 SEQTaRget-1.4.2/SEQTaRget/R/SEQuential.R | 49 SEQTaRget-1.4.2/SEQTaRget/R/class_definitions.R | 12 SEQTaRget-1.4.2/SEQTaRget/R/class_setters.R | 14 SEQTaRget-1.4.2/SEQTaRget/R/internal_analysis.R | 34 SEQTaRget-1.4.2/SEQTaRget/R/internal_covariates.R | 10 SEQTaRget-1.4.2/SEQTaRget/R/internal_glmHelpers.R |only SEQTaRget-1.4.2/SEQTaRget/R/internal_hazard.R | 2 SEQTaRget-1.4.2/SEQTaRget/R/internal_misc.R | 238 ++- SEQTaRget-1.4.2/SEQTaRget/R/internal_models.R | 29 SEQTaRget-1.4.2/SEQTaRget/R/internal_multinomial.R | 11 SEQTaRget-1.4.2/SEQTaRget/R/internal_survival.R | 19 SEQTaRget-1.4.2/SEQTaRget/R/internal_weights.R | 23 SEQTaRget-1.4.2/SEQTaRget/build/vignette.rds |binary SEQTaRget-1.4.2/SEQTaRget/inst/doc/ITT.R | 1 SEQTaRget-1.4.2/SEQTaRget/inst/doc/ITT.Rmd | 1 SEQTaRget-1.4.2/SEQTaRget/inst/doc/ITT.html | 3 SEQTaRget-1.4.2/SEQTaRget/inst/doc/SEQuential.R | 3 SEQTaRget-1.4.2/SEQTaRget/inst/doc/SEQuential.Rmd | 3 SEQTaRget-1.4.2/SEQTaRget/inst/doc/SEQuential.html | 682 +++++------ SEQTaRget-1.4.2/SEQTaRget/inst/doc/censoring.R | 282 ++-- SEQTaRget-1.4.2/SEQTaRget/inst/doc/censoring.Rmd | 4 SEQTaRget-1.4.2/SEQTaRget/inst/doc/censoring.html | 328 +---- SEQTaRget-1.4.2/SEQTaRget/inst/doc/doseresponse.R | 1 SEQTaRget-1.4.2/SEQTaRget/inst/doc/doseresponse.Rmd | 1 SEQTaRget-1.4.2/SEQTaRget/inst/doc/doseresponse.html | 3 SEQTaRget-1.4.2/SEQTaRget/inst/doc/seqopts.R | 1 SEQTaRget-1.4.2/SEQTaRget/inst/doc/seqopts.Rmd | 29 SEQTaRget-1.4.2/SEQTaRget/inst/doc/seqopts.html | 121 + SEQTaRget-1.4.2/SEQTaRget/man/SEQTaRget-package.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/SEQestimate.Rd | 4 SEQTaRget-1.4.2/SEQTaRget/man/SEQopts.Rd | 23 SEQTaRget-1.4.2/SEQTaRget/man/SEQoutput-class.Rd | 2 SEQTaRget-1.4.2/SEQTaRget/man/SEQuential.Rd | 6 SEQTaRget-1.4.2/SEQTaRget/man/bake_followup_spline.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/clean_fastglm.Rd | 8 SEQTaRget-1.4.2/SEQTaRget/man/fit_glm.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/format_time.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/formula_vars.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/inline.pred.Rd | 4 SEQTaRget-1.4.2/SEQTaRget/man/internal.model.Rd | 2 SEQTaRget-1.4.2/SEQTaRget/man/multinomial.Rd | 2 SEQTaRget-1.4.2/SEQTaRget/man/predict_model.Rd |only SEQTaRget-1.4.2/SEQTaRget/man/prepare.data_cached.Rd | 2 SEQTaRget-1.4.2/SEQTaRget/man/resolve_risk_times.Rd |only SEQTaRget-1.4.2/SEQTaRget/tests/testthat/setup.R |only SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_coefficients.R | 1 SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_coverage.R | 25 SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_hazard.R | 3 SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_misc.R | 121 + SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_parallel.R | 2 SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_parglm.R |only SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_setters.R | 19 SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_splines.R |only SEQTaRget-1.4.2/SEQTaRget/tests/testthat/test_survival.R | 59 SEQTaRget-1.4.2/SEQTaRget/vignettes/ITT.Rmd | 1 SEQTaRget-1.4.2/SEQTaRget/vignettes/SEQuential.Rmd | 3 SEQTaRget-1.4.2/SEQTaRget/vignettes/censoring.Rmd | 4 SEQTaRget-1.4.2/SEQTaRget/vignettes/doseresponse.Rmd | 1 SEQTaRget-1.4.2/SEQTaRget/vignettes/seqopts.Rmd | 29 69 files changed, 1468 insertions(+), 1002 deletions(-)
Title: Analyzing the Survey of Consumer Finances
Description: Analyze public-use micro data from the Survey of Consumer Finances.
Provides tools to download prepared data files, construct replicate-weighted
multiply imputed survey designs, compute descriptive statistics and model
estimates, and produce plots and tables. Methods follow design-based inference
for complex surveys and pooling across multiple imputations. See the package
website and the code book for background.
Author: Joseph Cohen [aut, cre]
Maintainer: Joseph Cohen <joseph.cohen@qc.cuny.edu>
Diff between scf versions 1.0.8 dated 2026-05-14 and 1.0.10 dated 2026-05-21
DESCRIPTION | 6 - MD5 | 18 +-- NEWS | 8 + R/scf_axis_text_x.R |only R/scf_pctile_sum.R | 194 ++++++++++++++++++++++++++++---------- R/scf_plot_cbar.R | 2 R/scf_plot_dbar.R | 2 R/scf_plot_dist.R | 2 R/utils-weighted.R |only inst/extdata/scf2022_mock_raw.rds |binary man/scf_pctile_sum.Rd | 27 +++-- 11 files changed, 187 insertions(+), 72 deletions(-)
Title: Ex Post Survey Data Harmonization
Description: Assist in reproducible retrospective (ex-post) harmonization
of data, particularly individual level survey data, by providing tools
for organizing metadata, standardizing the coding of variables, and
variable names and value labels, including missing values, and
documenting the data transformations, with the help of comprehensive
s3 classes.
Author: Daniel Antal [aut, cre] ,
Marta Kolczynska [ctb]
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
This is a re-admission after prior archival of version 0.2.7 dated 2026-01-14
Diff between retroharmonize versions 0.2.7 dated 2026-01-14 and 0.2.8 dated 2026-05-21
DESCRIPTION | 16 MD5 | 198 +-- NAMESPACE | 10 NEWS.md | 31 R/assertions.R | 47 R/concatenate.R | 69 - R/create_codebook.R | 126 + R/crosswalk.R | 162 +- R/document_survey_item.R | 76 - R/harmonize_na_values.R | 2 R/harmonize_survey_values.R | 123 - R/harmonize_survey_variables.R | 9 R/harmonize_values.R | 157 +- R/harmonize_var_names.R | 103 + R/labelled_spss_survey-print.R |only R/labelled_spss_survey-vctrs.R |only R/labelled_spss_survey.R | 1143 ------------------ R/labelled_spss_survey_arithmetic.R | 25 R/labelled_spss_survey_coercion.R | 1 R/merge_surveys.R | 104 + R/metadata_create.R | 222 ++- R/na_range_to_values.R | 19 R/pull_survey.R | 65 - R/read_csv.R | 159 +- R/read_dta.R | 125 + R/read_rds.R | 87 - R/read_spss.R | 168 +- R/read_surveys.R | 103 + R/retroharmonize.R | 2 R/subset_surveys.R | 60 R/survey.R | 28 R/survey_df.R | 30 R/utils.R | 8 inst/WORDLIST | 17 inst/doc/afrobarometer.html | 38 inst/doc/codelist.R | 2 inst/doc/codelist.Rmd | 2 inst/doc/codelist.html | 2 inst/doc/concept.Rmd | 2 inst/doc/concept.html | 8 inst/doc/crosswalk.html | 6 inst/doc/documentation.html | 6 inst/doc/harmonize_labels.html | 13 inst/doc/labelled_spss_survey.html | 18 inst/doc/metadata.html | 6 inst/doc/retroharmonize.html | 8 man/as_labelled_spss_survey.Rd | 2 man/collect_val_labels.Rd | 16 man/create_codebook.Rd | 13 man/crosswalk_surveys.Rd | 16 man/crosswalk_table_create.Rd | 32 man/document_survey_item.Rd | 72 - man/document_surveys.Rd | 4 man/harmonize_na_values.Rd | 16 man/harmonize_survey_values.Rd | 30 man/harmonize_survey_variables.Rd | 19 man/harmonize_values.Rd | 142 +- man/harmonize_var_names.Rd | 88 - man/label_normalize.Rd | 29 man/labelled_spss_survey.Rd | 102 - man/labelled_spss_survey_coercion.Rd | 4 man/labelled_spss_survey_vctrs.Rd | 35 man/merge_surveys.Rd | 68 - man/merge_waves.Rd |only man/metadata_create.Rd | 55 man/metadata_survey_create.Rd | 91 - man/na_range_to_values.Rd | 4 man/pull_survey.Rd | 69 - man/read_csv.Rd | 70 - man/read_dta.Rd | 71 - man/read_rds.Rd | 70 - man/read_spss.Rd | 96 - man/read_surveys.Rd | 93 - man/retroharmonize-package.Rd | 5 man/retroharmonize.Rd | 5 man/survey.Rd | 4 man/survey_df.Rd | 4 tests/testthat/_snaps |only tests/testthat/test-as_labelled_spss_survey.R |only tests/testthat/test-collect_val_labels.R | 7 tests/testthat/test-concatenate.R |only tests/testthat/test-create_codebook.R | 26 tests/testthat/test-crosswalk.R | 71 - tests/testthat/test-document_survey_item.R | 128 +- tests/testthat/test-harmonize_na_values.R | 57 tests/testthat/test-harmonize_survey_values.R | 40 tests/testthat/test-harmonize_values.R | 40 tests/testthat/test-harmonize_var_names.R |only tests/testthat/test-labelled_spss_survey-print.R |only tests/testthat/test-labelled_spss_survey-vctrs.R |only tests/testthat/test-labelled_spss_survey.R | 129 -- tests/testthat/test-labelled_spss_survey_arithmetic.R |only tests/testthat/test-merge_surveys.R | 9 tests/testthat/test-merge_surveys_harmonize_surveys.R | 76 - tests/testthat/test-metadata_create.R | 192 ++- tests/testthat/test-na_range_to_values.R | 12 tests/testthat/test-pull_survey.R | 147 ++ tests/testthat/test-read_csv.R | 99 + tests/testthat/test-read_dta.R |only tests/testthat/test-read_rds.R | 70 + tests/testthat/test-read_spss.R | 143 ++ tests/testthat/test-read_surveys.R | 131 ++ tests/testthat/test-survey_df.R | 21 tests/testthat/test-utils.R |only vignettes/codelist.Rmd | 2 vignettes/concept.Rmd | 2 106 files changed, 3349 insertions(+), 2984 deletions(-)
More information about retroharmonize at CRAN
Permanent link
Title: Miscellaneous Utilities for 'rerddap'
Description: The 'rerddapUtils' package is an 'R' package that is a set of four main
functions designed to work with and extend the 'rerddap' package. These functions includes one for restricting by season,
one for splitting large requests, and two for working with projected datasets. There are also two utility functions
that provide estimates of the size of a proposed 'rerddap::griddap()' request.
Author: Roy Mendelssohn [aut, cre]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddapUtils versions 1.0.0 dated 2026-05-19 and 1.0.1 dated 2026-05-21
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/conversion.R | 12 +++++++----- R/griddap_season.R | 1 + R/griddap_split.R | 1 + data/proj_extract.rda |binary man/griddap_season.Rd | 1 + man/griddap_split.Rd | 1 + man/latlon_to_xy.Rd | 1 + man/xy_to_latlon.Rd | 11 ++++++----- 11 files changed, 36 insertions(+), 24 deletions(-)
Title: Causal Mediation Analysis in Presence of Multiple Mediators
Uncausally Related
Description: Estimates key quantities in causal mediation analysis - including
average causal mediation effects (indirect effects), average direct
effects, total effects, and proportions mediated - in the presence of
multiple uncausally related mediators. Methods are described by
Jerolon et al., (2021) <doi:10.1515/ijb-2019-0088> and extended to
accommodate survival outcomes as described by Domingo-Relloso et al.,
(2024) <doi:10.1101/2024.02.16.24302923>.
Author: Allan Jerolon [aut],
Arce Domingo-Relloso [aut],
Samara Kiihl [cre, aut],
Maria Tellez-Plaza [aut]
Maintainer: Samara Kiihl <samarak@unicamp.br>
Diff between multimediate versions 0.1.4 dated 2025-07-14 and 0.1.6 dated 2026-05-21
multimediate-0.1.4/multimediate/data/data1.csv |only multimediate-0.1.4/multimediate/data/data2.csv |only multimediate-0.1.4/multimediate/data/data3.csv |only multimediate-0.1.4/multimediate/data/data4.csv |only multimediate-0.1.4/multimediate/data/data5.csv |only multimediate-0.1.6/multimediate/DESCRIPTION | 12 multimediate-0.1.6/multimediate/MD5 | 32 multimediate-0.1.6/multimediate/R/functions_cor.R | 35 multimediate-0.1.6/multimediate/R/multimediate.R | 1838 ++++++++------ multimediate-0.1.6/multimediate/R/multimediate_survival.R | 18 multimediate-0.1.6/multimediate/README.md | 4 multimediate-0.1.6/multimediate/data/data1.csv.gz |only multimediate-0.1.6/multimediate/data/data2.csv.gz |only multimediate-0.1.6/multimediate/data/data3.csv.gz |only multimediate-0.1.6/multimediate/data/data4.csv.gz |only multimediate-0.1.6/multimediate/data/data5.csv.gz |only multimediate-0.1.6/multimediate/man/data1.Rd | 23 multimediate-0.1.6/multimediate/man/data2.Rd | 27 multimediate-0.1.6/multimediate/man/data3.Rd | 26 multimediate-0.1.6/multimediate/man/data4.Rd | 24 multimediate-0.1.6/multimediate/man/data5.Rd | 14 multimediate-0.1.6/multimediate/man/multimediate.Rd | 24 22 files changed, 1217 insertions(+), 860 deletions(-)
Title: Local Polynomial Density Estimation and Inference
Description: Implements local polynomial distribution and density methods for point estimation, inference and bandwidth selection, documented in Cattaneo, Jansson and Ma (2020) <doi:10.1080/01621459.2019.1635480>, Cattaneo, Jansson and Ma (2022) <doi:10.18637/jss.v101.i02>, and Cattaneo, Jansson and Ma (2024) <doi:10.1016/j.jeconom.2021.01.006>. lpdensity() constructs local polynomial distribution and density estimators with robust bias-corrected inference, and lpbwdensity() implements data-driven bandwidth selection.
Author: Matias D. Cattaneo [aut, cre],
Michael Jansson [aut],
Xinwei Ma [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between lpdensity versions 2.5 dated 2024-10-06 and 3.0 dated 2026-05-21
DESCRIPTION | 39 +++++------ MD5 | 51 +++++++------- R/lpbwdensity.R | 6 - R/lpbwdensity_fn.R | 159 +++++++++++++++++++-------------------------- R/lpbwdensity_methods.R | 18 ++--- R/lpdensity-package.R | 8 +- R/lpdensity.R | 6 - R/lpdensity_fn.R | 16 ++-- R/lpdensity_methods.R | 48 ++++++------- build/partial.rdb |binary inst/CITATION | 7 - man/coef.lpbwdensity.Rd | 6 - man/coef.lpdensity.Rd | 6 - man/confint.lpdensity.Rd | 6 - man/lpbwdensity.Rd | 6 - man/lpdensity-package.Rd | 8 +- man/lpdensity.Rd | 6 - man/lpdensity.plot.Rd | 6 - man/plot.lpdensity.Rd | 6 - man/print.lpbwdensity.Rd | 6 - man/print.lpdensity.Rd | 6 - man/summary.lpbwdensity.Rd | 6 - man/summary.lpdensity.Rd | 6 - man/vcov.lpdensity.Rd | 6 - tests |only 25 files changed, 212 insertions(+), 226 deletions(-)
Title: Analysis of Surface Plasmon Resonance Data
Description: Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.
Author: Janice McCarthy Developer [aut, cre, cph],
Kan Li Dev [aut],
S. Moses Dennison [aut],
Georgia D. Tomaras [aut]
Maintainer: Janice McCarthy Developer <janice.mccarthy@duke.edu>
This is a re-admission after prior archival of version 0.1.2 dated 2026-05-05
Diff between htrSPRanalysis versions 0.1.2 dated 2026-05-05 and 0.1.3 dated 2026-05-21
DESCRIPTION | 6 ++-- MD5 | 8 ++--- R/InputProcessingFunctions.R | 6 ---- R/UserFunctions.R | 64 +++++++++++++++++++++++++++++++++---------- man/process_input.Rd | 58 +++++++++++++++++++++++++++++++------- 5 files changed, 105 insertions(+), 37 deletions(-)
More information about htrSPRanalysis at CRAN
Permanent link
Title: Automated Eye Tracking Data Quality Determination for
Screen-Based Eye Trackers
Description: Compute common data quality metrics for accuracy, precision and data loss
for screen-based eye trackers. The package supports gaze input in screen pixels or
degrees and reports angular measures in degrees where appropriate. If you use this
package, please cite Niehorster, D.C., Nyström, M., Hessels, R.S., Benjamins, J.S.,
Andersson, R., and Hooge, I.T.C. (2026). The fundamentals of eye tracking part 7:
Determining data quality. Behavior Research Methods. <doi:10.3758/s13428-026-03039-4>.
Author: Diederick Niehorster [aut, cre, cph]
Maintainer: Diederick Niehorster <diederick_c.niehorster@humlab.lu.se>
Diff between ETDQualitizer versions 0.9.0 dated 2025-09-09 and 1.0.0 dated 2026-05-21
DESCRIPTION | 13 LICENSE | 2 MD5 | 20 R/ETDQualitizer.R | 1518 ++++++++++++++-------------- man/DataQuality.Rd | 4 man/compute_data_quality_from_validation.Rd | 5 man/report_data_quality_table.Rd | 5 tests/testthat/test-data_quality_class.R | 226 ++-- tests/testthat/test-data_quality_metrics.R | 150 +- tests/testthat/test-fick_conversions.R | 74 - tests/testthat/test-screen_configuration.R | 160 +- 11 files changed, 1109 insertions(+), 1068 deletions(-)
Title: Bayesian Estimation of the Temporal and Spatio-Temporal ETAS
Models for Earthquake Occurrences
Description: The Epidemic Type Aftershock Sequence (ETAS) model is widely
used for modelling and forecasting earthquake occurrences. This package
implements Bayesian estimation routines for both the temporal and spatial ETAS
model, allowing samples to be drawn from the full posterior distribution
of the model parameters given an earthquake catalogue. The methods are
described in Ross (2021) "Bayesian Estimation of the ETAS Model for
Earthquake Occurrences" <doi:10.1785/0120200198>.
Author: Gordon J. Ross [aut, cre]
Maintainer: Gordon J. Ross <gordon@gordonjross.co.uk>
This is a re-admission after prior archival of version 1.0.3 dated 2017-01-17
Diff between bayesianETAS versions 1.0.3 dated 2017-01-17 and 2.0.0 dated 2026-05-21
bayesianETAS-1.0.3/bayesianETAS/R/bayesianETAS-package.R |only bayesianETAS-1.0.3/bayesianETAS/R/maxLikelihoodETAS.R |only bayesianETAS-1.0.3/bayesianETAS/R/sampleETASposterior.R |only bayesianETAS-1.0.3/bayesianETAS/R/simulateETAS.R |only bayesianETAS-1.0.3/bayesianETAS/R/simulateNHPP.R |only bayesianETAS-1.0.3/bayesianETAS/man/bayesianETAS.Rd |only bayesianETAS-1.0.3/bayesianETAS/man/sampleETASposterior.Rd |only bayesianETAS-1.0.3/bayesianETAS/man/simulateNHPP.Rd |only bayesianETAS-1.0.3/bayesianETAS/src/Makevars |only bayesianETAS-2.0.0/bayesianETAS/DESCRIPTION | 30 bayesianETAS-2.0.0/bayesianETAS/MD5 | 26 bayesianETAS-2.0.0/bayesianETAS/NAMESPACE | 8 bayesianETAS-2.0.0/bayesianETAS/R/packagefiles.R |only bayesianETAS-2.0.0/bayesianETAS/inst |only bayesianETAS-2.0.0/bayesianETAS/man/estimateETAS.Rd |only bayesianETAS-2.0.0/bayesianETAS/man/maxLikelihoodETAS.Rd | 75 - bayesianETAS-2.0.0/bayesianETAS/man/simulateETAS.Rd | 72 - bayesianETAS-2.0.0/bayesianETAS/src/etas.cpp | 790 ++++++++----- bayesianETAS-2.0.0/bayesianETAS/src/init.c |only bayesianETAS-2.0.0/bayesianETAS/tests |only 20 files changed, 676 insertions(+), 325 deletions(-)
Title: Record Linkage Based on an Entropy-Maximizing Classifier
Description: The goal of 'automatedRecLin' is to perform record linkage (also known as entity resolution) in unsupervised or supervised settings. It compares pairs of records from two datasets using selected comparison functions to estimate the probability or density ratio between matched and non-matched records. Based on these estimates, it predicts a set of matches that maximizes entropy. For details see: Lee et al. (2022) <https://www150.statcan.gc.ca/n1/pub/12-001-x/2022001/article/00007-eng.htm>, Vo et al. (2023) <https://ideas.repec.org/a/eee/csdana/v179y2023ics0167947322002365.html>, Sugiyama et al. (2008) <doi:10.1007/s10463-008-0197-x>.
Author: Adam Struzik [aut, cre] ,
Maciej Beresewicz [aut, ctb]
Maintainer: Adam Struzik <adastr5@st.amu.edu.pl>
Diff between automatedRecLin versions 1.1.0 dated 2026-05-08 and 1.1.1 dated 2026-05-21
automatedRecLin-1.1.0/automatedRecLin/man/est_se_bootstrap.Rd |only automatedRecLin-1.1.1/automatedRecLin/DESCRIPTION | 9 automatedRecLin-1.1.1/automatedRecLin/MD5 | 27 automatedRecLin-1.1.1/automatedRecLin/NEWS.md | 5 automatedRecLin-1.1.1/automatedRecLin/R/bootstrap.R | 18 automatedRecLin-1.1.1/automatedRecLin/R/internals.R | 1644 ++++++++-- automatedRecLin-1.1.1/automatedRecLin/R/methods.R | 12 automatedRecLin-1.1.1/automatedRecLin/R/unsupervised_learning.R | 807 ---- automatedRecLin-1.1.1/automatedRecLin/inst/doc/mec-blocking.R | 12 automatedRecLin-1.1.1/automatedRecLin/inst/doc/mec-blocking.Rmd | 16 automatedRecLin-1.1.1/automatedRecLin/inst/doc/mec-blocking.html | 87 automatedRecLin-1.1.1/automatedRecLin/inst/tinytest/test_mec_blocking.R | 133 automatedRecLin-1.1.1/automatedRecLin/man/mec_blocking.Rd | 131 automatedRecLin-1.1.1/automatedRecLin/tests/tinytest.R | 16 automatedRecLin-1.1.1/automatedRecLin/vignettes/mec-blocking.Rmd | 16 15 files changed, 1744 insertions(+), 1189 deletions(-)
More information about automatedRecLin at CRAN
Permanent link
Title: Bayesian Multivariate GARCH Models
Description: Fit Bayesian multivariate GARCH models using 'Stan' for full Bayesian inference. Generate (weighted) forecasts for means, variances (volatility) and correlations. Currently DCC(P,Q), CCC(P,Q), pdBEKK(P,Q), and BEKK(P,Q) parameterizations are implemented, alongside a constant covariance baseline (that can be used for testing whether GARCH is warranted), based either on a multivariate gaussian normal or student-t distribution. DCC and CCC models are based on Engle (2002) <doi:10.1198/073500102288618487> and Bollerslev (1990). The BEKK parameterization follows Engle and Kroner (1995) <doi:10.1017/S0266466600009063> while the pdBEKK as well as the estimation approach for this package is described in Rast et al. (2020) <doi:10.31234/osf.io/j57pk>. The fitted models contain 'rstan' objects and can be examined with 'rstan' functions.
Author: Philippe Rast [aut, cre] ,
Stephen Martin [aut]
Maintainer: Philippe Rast <rast.ph@gmail.com>
Diff between bmgarch versions 2.0.0 dated 2023-09-11 and 2.1.0 dated 2026-05-21
DESCRIPTION | 19 MD5 | 95 NAMESPACE | 2 NEWS.md | 55 R/bmgarch-package.R | 7 R/bmgarch.R | 99 R/cmdstan_path.R |only R/forecasting_gq.R | 16 R/helper.R | 22 R/lfocv.R | 35 R/model_weights.R | 8 R/print.R | 119 R/stanmodels.R | 4 R/zzz.R | 12 README.md | 2 build/partial.rdb |binary inst/REFERENCES.bib | 15 inst/auto/REFERENCES.el | 6 inst/stan/CCCMGARCH.stan | 4 inst/stan/DCCMGARCH.stan | 2 inst/stan/constMGARCH.stan |only inst/stan/forecastConst.stan |only inst/stan/functions/jacobian.stan | 2 man/bmgarch-package.Rd | 10 man/bmgarch.Rd | 7 man/dot-colQTs.Rd | 2 man/dot-extract_param_list.Rd |only man/dot-f_MA.Rd | 10 man/dot-f_array_x_mat.Rd | 8 man/dot-get_target_stan_path.Rd |only man/dot-pred_array_to_df.Rd | 2 man/dot-qtile.Rd | 2 man/supported_models.Rd | 4 src/Makevars | 2 src/RcppExports.cpp | 4 src/stanExports_BEKKMGARCH.cc | 34 src/stanExports_BEKKMGARCH.h | 3889 +++++++++++++--------------- src/stanExports_CCCMGARCH.cc | 34 src/stanExports_CCCMGARCH.h | 4369 ++++++++++++++----------------- src/stanExports_DCCMGARCH.cc | 34 src/stanExports_DCCMGARCH.h | 5235 +++++++++++++++++--------------------- src/stanExports_constMGARCH.cc |only src/stanExports_constMGARCH.h |only src/stanExports_forecastBEKK.cc | 34 src/stanExports_forecastBEKK.h | 4072 +++++++++++++---------------- src/stanExports_forecastCCC.cc | 34 src/stanExports_forecastCCC.h | 3823 ++++++++++++--------------- src/stanExports_forecastConst.cc |only src/stanExports_forecastConst.h |only src/stanExports_forecastDCC.cc | 34 src/stanExports_forecastDCC.h | 4862 ++++++++++++++++------------------- src/stanExports_pdBEKKMGARCH.cc | 34 src/stanExports_pdBEKKMGARCH.h | 4889 ++++++++++++++++------------------- 53 files changed, 14800 insertions(+), 17152 deletions(-)
Title: Sparse Three-Dimensional Arrays and Linear Algebra Utilities
Description: Defines sparse three-dimensional arrays
and supports standard operations on them.
The package also includes utility functions for
matrix calculations that are common in
statistics, such as quadratic forms.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.sparse versions 3.1-0 dated 2024-06-21 and 3.2-0 dated 2026-05-21
DESCRIPTION | 18 ++++---- MD5 | 45 +++++++++++--------- NAMESPACE | 7 +++ NEWS | 35 ++++++++++++++++ R/halfmatrix.R |only R/linalg.R | 27 +++++++----- R/matrixpower.R | 3 - R/sparse3Darray.R | 55 +++++++++++++++++-------- R/sparseMarkov.R |only R/sparsecommon.R | 87 ++++++++++++++++++++++++++++++++-------- R/sparselinalg.R | 18 ++++---- inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/macros/defns.Rd | 36 +++++++++++----- man/methods.sparse3Darray.Rd | 12 ++++- man/runSparseMarkovChain.Rd |only man/spatstat.sparse-internal.Rd | 8 ++- man/spatstat.sparse-package.Rd | 7 ++- man/sumouter.Rd | 1 man/sumsymouter.Rd |only man/symmatrix.Rd |only src/init.c | 2 src/proto.h | 2 src/rmarkovchain.c |only src/spasumsymout.h | 4 - tests/sparse3Darrays.R | 69 ++++++++++++++++++++++++------- tests/sparsemarkov.R |only 27 files changed, 323 insertions(+), 115 deletions(-)
More information about spatstat.sparse at CRAN
Permanent link
Title: Introductory Statistics with R
Description: Data sets and scripts for text examples and exercises in
P. Dalgaard (2008), `Introductory Statistics with R', 2nd ed., Springer Verlag, ISBN 978-0387790534.
Author: Peter Dalgaard [aut, cre]
Maintainer: Peter Dalgaard <pd.mes@cbs.dk>
Diff between ISwR versions 2.0-11 dated 2025-10-23 and 2.0-12 dated 2026-05-21
DESCRIPTION | 8 +-- MD5 | 6 +- tests/allexercises.Rout.save | 12 ++--- tests/allscripts.Rout.save | 96 +++++++++++++++++++++---------------------- 4 files changed, 61 insertions(+), 61 deletions(-)
Title: Generalized Kumaraswamy Distribution Family
Description: Implements the five-parameter Generalized Kumaraswamy ('gkw')
distribution proposed by 'Carrasco, Ferrari and Cordeiro (2010)'
<doi:10.48550/arXiv.1004.0911> and its seven nested sub-families for
modeling bounded continuous data on the unit interval (0,1). The 'gkw'
distribution extends the Kumaraswamy distribution described by Jones (2009)
<doi:10.1016/j.stamet.2008.04.001>. Provides density, distribution,
quantile, and random generation functions, along with analytical
log-likelihood, gradient, and Hessian functions implemented in 'C++' via
'RcppArmadillo' for maximum computational efficiency. Suitable for modeling
proportions, rates, percentages, and indices exhibiting complex features
such as asymmetry, or heavy tails and other shapes not adequately captured by
standard distributions like simple Beta or Kumaraswamy.
Author: Jose Evandeilton Lopes [aut, cre]
Maintainer: Jose Evandeilton Lopes <evandeilton@gmail.com>
Diff between gkwdist versions 1.1.2 dated 2026-01-08 and 1.1.3 dated 2026-05-21
DESCRIPTION | 6 MD5 | 20 NEWS.md | 64 + README.md | 1531 +++++++++++++++++++++---------------------- inst/doc/into-gkwdist.html | 43 - inst/doc/theory-gkwdist.html | 4 src/bkw.cpp | 23 src/ekw.cpp | 57 - src/gkw.cpp | 71 - src/gkwinit.cpp | 23 src/utils.h | 22 11 files changed, 930 insertions(+), 934 deletions(-)
Title: Dendrochronology Program Library in R
Description: Perform tree-ring analyses such as detrending, chronology
building, and cross dating. Read and write standard file formats
used in dendrochronology.
Author: Andy Bunn [aut, cph, cre, trl],
Mikko Korpela [aut, cph, trl],
Franco Biondi [aut, cph],
Filipe Campelo [aut, cph],
Stefan Klesse [aut, cph],
Pierre Merian [aut, cph],
Fares Qeadan [aut, cph],
Christian Zang [aut, cph],
Allan Buras [ctb],
Alice Cecil [...truncated...]
Maintainer: Andy Bunn <bunna@wwu.edu>
Diff between dplR versions 1.7.8 dated 2025-01-30 and 1.7.9 dated 2026-05-21
ChangeLog | 74 ++++ DESCRIPTION | 6 MD5 | 54 +-- NAMESPACE | 3 R/bakker.R | 7 R/chron.ars.R | 91 +++-- R/rcs.R | 133 ++++---- R/rwi.stats.running.R | 732 +++++++++++++++++++++++------------------------ R/universalPOWT.R | 11 R/xdate.floater.R | 301 +++++++++++-------- man/ads.Rd | 4 man/caps.Rd | 2 man/ccf.series.rwl.Rd | 2 man/chron.ars.Rd | 98 ++++-- man/chron.stabilized.Rd | 2 man/csv2rwl.Rd | 2 man/detrend.series.Rd | 2 man/rcs.Rd | 108 +++++- man/read.crn.Rd | 2 man/read.tucson.Rd | 2 man/rwi.stats.running.Rd | 6 man/rwl.report.Rd | 6 man/ssf.Rd | 2 man/sss.Rd | 47 ++- man/treeMean.Rd | 2 man/write.crn.Rd | 2 man/write.tucson.Rd | 2 man/xdate.floater.Rd | 164 +++++++--- 28 files changed, 1140 insertions(+), 727 deletions(-)
Title: Grammar of Graphics for 'base' Plot
Description: A grammar of graphics framework built on 'base' graphics. It
provides a 'bbplot' object and a '+' operator to incrementally compose plots
from data, aesthetic mappings and layers, then render them using the base
plotting system. The package includes common geometric layers (points, lines,
segments, bars, histograms, boxplots and tiles), scales for color and other
aesthetics, legends, faceting, themes, and significance annotations.
Author: Guangchuang Yu [aut, cre, cph]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between plotbb versions 0.1.1 dated 2026-01-30 and 0.1.2 dated 2026-05-21
DESCRIPTION | 6 +- MD5 | 25 +++++----- NAMESPACE | 2 NEWS.md | 8 +++ R/bb-density.R |only R/bb-lm.R | 105 ++++++++++++++++++++++++++++++------------ R/print.R | 74 ++++++++++++++++++++++++++--- R/scale.R | 107 ++++++++++++++++++++++++++++++++++--------- R/utilities.R | 35 +++++++++++++- build/vignette.rds |binary inst/doc/plotbb.html | 50 ++++++++++---------- man/bb_legend.Rd | 5 +- man/layer.Rd | 19 ++++++- tests/testthat/test-basics.R | 28 +++++++++++ 14 files changed, 356 insertions(+), 108 deletions(-)
Title: High Dimensional Analysis in Linked Spaces
Description: A 'shiny' GUI that performs high dimensional cluster analysis.
This tool performs data preparation, clustering and visualisation within a dynamic GUI.
With interactive methods allowing the user to change settings all without having to to leave the GUI.
An earlier version of this package was described in Laa and Valencia (2022) <doi:10.1140/epjp/s13360-021-02310-1>.
Author: Gabriel McCoy [aut, cre] ,
Ursula Laa [aut] ,
German Valencia [aut]
Maintainer: Gabriel McCoy <gabe.mccoy02@gmail.com>
Diff between pandemonium versions 0.2.4 dated 2025-11-03 and 1.0.0 dated 2026-05-21
pandemonium-0.2.4/pandemonium/man/chi2bins.Rd |only pandemonium-0.2.4/pandemonium/man/chi2score.Rd |only pandemonium-0.2.4/pandemonium/man/outsidescore.Rd |only pandemonium-1.0.0/pandemonium/DESCRIPTION | 26 pandemonium-1.0.0/pandemonium/MD5 | 145 pandemonium-1.0.0/pandemonium/NAMESPACE | 5 pandemonium-1.0.0/pandemonium/R/coordinates.R | 53 pandemonium-1.0.0/pandemonium/R/data.R | 1 pandemonium-1.0.0/pandemonium/R/dimensionReduction.R | 12 pandemonium-1.0.0/pandemonium/R/helper.R | 135 pandemonium-1.0.0/pandemonium/R/output.R | 59 pandemonium-1.0.0/pandemonium/R/plotting.R | 407 +- pandemonium-1.0.0/pandemonium/R/scores.R | 165 - pandemonium-1.0.0/pandemonium/R/server.R | 1515 +++++----- pandemonium-1.0.0/pandemonium/R/tourMaker.R | 128 pandemonium-1.0.0/pandemonium/R/ui.R | 550 ++- pandemonium-1.0.0/pandemonium/README.md | 13 pandemonium-1.0.0/pandemonium/inst/doc/analysis-pages.R | 10 pandemonium-1.0.0/pandemonium/inst/doc/analysis-pages.Rmd | 63 pandemonium-1.0.0/pandemonium/inst/doc/analysis-pages.html | 144 pandemonium-1.0.0/pandemonium/inst/doc/datainput.R | 13 pandemonium-1.0.0/pandemonium/inst/doc/datainput.Rmd | 28 pandemonium-1.0.0/pandemonium/inst/doc/datainput.html | 46 pandemonium-1.0.0/pandemonium/inst/doc/dim-reduction.R | 18 pandemonium-1.0.0/pandemonium/inst/doc/dim-reduction.Rmd | 18 pandemonium-1.0.0/pandemonium/inst/doc/dim-reduction.html | 18 pandemonium-1.0.0/pandemonium/inst/doc/get-coords.R | 10 pandemonium-1.0.0/pandemonium/inst/doc/get-coords.Rmd | 10 pandemonium-1.0.0/pandemonium/inst/doc/get-coords.html | 33 pandemonium-1.0.0/pandemonium/inst/doc/get-scores.R | 49 pandemonium-1.0.0/pandemonium/inst/doc/get-scores.Rmd | 59 pandemonium-1.0.0/pandemonium/inst/doc/get-scores.html | 69 pandemonium-1.0.0/pandemonium/inst/doc/make-plots.R | 11 pandemonium-1.0.0/pandemonium/inst/doc/make-plots.Rmd | 27 pandemonium-1.0.0/pandemonium/inst/doc/make-plots.html | 138 pandemonium-1.0.0/pandemonium/inst/doc/output.Rmd | 2 pandemonium-1.0.0/pandemonium/inst/doc/output.html | 2 pandemonium-1.0.0/pandemonium/man/chi2Bins.Rd |only pandemonium-1.0.0/pandemonium/man/chi2Score.Rd |only pandemonium-1.0.0/pandemonium/man/computeChi2.Rd | 2 pandemonium-1.0.0/pandemonium/man/getBenchmarkInformation.Rd | 2 pandemonium-1.0.0/pandemonium/man/getClusterDists.Rd | 2 pandemonium-1.0.0/pandemonium/man/getDists.Rd | 4 pandemonium-1.0.0/pandemonium/man/makePlots.Rd | 55 pandemonium-1.0.0/pandemonium/man/makeResults.Rd |only pandemonium-1.0.0/pandemonium/man/normCoords.Rd | 1 pandemonium-1.0.0/pandemonium/man/outsideScore.Rd |only pandemonium-1.0.0/pandemonium/man/pandemonium.Rd | 14 pandemonium-1.0.0/pandemonium/man/plotChi2.Rd | 2 pandemonium-1.0.0/pandemonium/man/plotDimRed.Rd | 5 pandemonium-1.0.0/pandemonium/man/plotObs.Rd | 2 pandemonium-1.0.0/pandemonium/man/plotSigBin.Rd | 2 pandemonium-1.0.0/pandemonium/man/plotWC.Rd | 2 pandemonium-1.0.0/pandemonium/man/pullCoords.Rd | 7 pandemonium-1.0.0/pandemonium/man/pullCoordsNoCov.Rd | 7 pandemonium-1.0.0/pandemonium/man/rawCoords.Rd | 1 pandemonium-1.0.0/pandemonium/man/tSNE.Rd | 3 pandemonium-1.0.0/pandemonium/man/tourMaker.Rd | 5 pandemonium-1.0.0/pandemonium/man/umap.Rd | 3 pandemonium-1.0.0/pandemonium/man/userCoords.Rd | 9 pandemonium-1.0.0/pandemonium/man/writeResults.Rd | 29 pandemonium-1.0.0/pandemonium/tests/testthat/test-plotting.R | 43 pandemonium-1.0.0/pandemonium/vignettes/Images/benchmark_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/comparison_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/coordinates_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/dimred_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/distancebreak_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/input_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/statistics_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/Images/tour_tab_bike.png |binary pandemonium-1.0.0/pandemonium/vignettes/analysis-pages.Rmd | 63 pandemonium-1.0.0/pandemonium/vignettes/datainput.Rmd | 28 pandemonium-1.0.0/pandemonium/vignettes/dim-reduction.Rmd | 18 pandemonium-1.0.0/pandemonium/vignettes/get-coords.Rmd | 10 pandemonium-1.0.0/pandemonium/vignettes/get-scores.Rmd | 59 pandemonium-1.0.0/pandemonium/vignettes/make-plots.Rmd | 27 pandemonium-1.0.0/pandemonium/vignettes/output.Rmd | 2 77 files changed, 2641 insertions(+), 1748 deletions(-)
Title: Synthesise and Correlate Likert Scale and Rating-Scale Data
Based on Summary Statistics
Description: Generate and correlate synthetic Likert and rating-scale
questionnaire responses with predefined means, standard deviations,
Cronbach's Alpha, Factor Loading table, coefficients, and other summary
statistics.
It can be used to simulate Likert data, construct multi-item scales,
generate correlation matrices, and create example survey datasets for
teaching statistics, psychometrics, and methodological research.
Worked examples and documentation are available in the package
articles, accessible via the package website,
<https://winzarh.github.io/LikertMakeR/>.
Author: Hume Winzar [cre, aut]
Maintainer: Hume Winzar <winzar@gmail.com>
Diff between LikertMakeR versions 2.0.0 dated 2026-03-23 and 2.3.0 dated 2026-05-21
DESCRIPTION | 21 MD5 | 35 NAMESPACE | 17 NEWS.md | 21 R/RcppExports.R | 4 R/makeItemsScale.R | 445 +++++---- README.md | 2 build/vignette.rds |binary inst/doc/LikertMakeR_vignette.R | 65 - inst/doc/LikertMakeR_vignette.Rmd | 74 - inst/doc/LikertMakeR_vignette.html | 1559 +++++++++++++++++------------------ inst/doc/reliability_measures.html | 28 inst/extdata |only man/makeItemsScale.Rd | 114 -- src/RcppExports.cpp | 15 src/score_items.cpp |only tests/testthat/test-makeItemsScale.R | 13 vignettes/LikertMakeR_vignette.Rmd | 74 - vignettes/references_2.bib | 36 19 files changed, 1248 insertions(+), 1275 deletions(-)