Publications

Polly: An R package for genotyping microsatellites and detecting highly polymorphic DNA markers from short-read data (with Annabel Perry, Gil Rosenthal, and Heath Blackmon): Molecular Ecology Resources, Feb 2024
DOI 10.1111/1755-0998.13933

CRAN Task Views: The Next Generation (with Achim Zeileis, Roger Bivand, Kurt Hornik, and Natalie Vialaneix): arXiv:2305:17573, May 2023
DOI 10.48550/arXiv.2305.17573
Creating Algorithmically Generated Questions Using a Modern, Open-Sourced, Online Platform: PrairieLearn (with Firas Moosvi, Craig Zilles, Steven A. Wolfram, Fraida Fund, Laura K. Alford, and Jonatan Schroeder): SIGCSE 2023: Proceedings of the 54th ACM Technical Symposium on Comptuer Science Education, Volume 2, Issue 5026, March 2023
DOI 10.1145/3545947.3569634
mlpack 4: a fast, header-only C++ machine learning library (with Ryan R. Curtin as lead author and several others): Journal of Open Source Software, Volume 8(82), Issue 5026, February 2023
DOI 10.21105/joss.05026
PDF version

Binary R Packages for Linux: Past, Present and Future (with Iñaki Ucar): arXiv:2103.08069, March 2021
PDF version
Parallel Computing with R: A brief review: WIREs Computational Statistics, 2021, Volume 13, Issue 2
DOI 10.1002/wics.1515

Assessing United States Country-Level Exposure for Research on Tropical Cyclones and Human Health (with G. Brooke Anderson as lead author and others): Environmental Health Perspectives, 2020, Vol 128, No 8
DOI 10.1289/EHP6976, PDF version
The Rockerverse: Packages and Applications for Containerization with R (with Daniel Nuest as lead author and many others): R Journal, Volume 12, Number 1, 2020
DOI 10.32614/RJ-2020-007, PDF version
An R Autograder for PrairieLearn (with Alton Barbehenn): arXiv:2003.06500, March 2020
PDF version
The Rockerverse: Packages and Applications for Containerization with R (with Daniel Nuest as lead author and many others): arXiv:2001.10641, January 2020
PDF version

Parallel Computing With R: A Brief Review: arXiv:1912.11144, December 2019
PDF version
Thirteen Simple Steps for Creating An R Package with an External C++ Library: arXiv:1911.06416, November 2019
PDF version

Seasonal Adjustment by X-13ARIMA-SEATS in R (with Christoph Sax): Journal of Statistical Software, Volume 87, Issue 11, December 2018
DOI 10.18637/jss.v087.i11
RcppMsgPack: MessagePack Headers and Interface Functions for R (with Travers Ching): The R Journal, Volume 10, Issue 2, December 2018
DOI 10.32614/RJ-2018-068, PDF version
NORMAN MATLOFF. Parallel Computing for Data Science: With Examples in R, C++, and CUDA. Boca Raton: CRC Press. (Book review): Biometrics, Volume 72, Issue 2, Pages 769-778, 2018
DOI 10.1111/biom.12896
Extending R with C++: A Brief Introduction to Rcpp (with James Balamuta): The American Statistician, Volume 72, Issue 1, Pages 28-36, 2018
DOI 10.1080/00031305.2017.1375990

An Introduction to Rocker: Docker Containers for R (with Carl Boettiger): The R Journal, Volume 9, Issue 2, December 2017
DOI 10.32614/RJ-2017-065, PDF version
Extending R with C++: A Brief Introduction to Rcpp (with James Balamuta): PeerJ Preprints, Volume 5, Issue 3188v1, August 2017
PDF version
Hosting Data Packages via drat: A Case Study with Hurricane Exposure Data (with Brooke Anderson): The R Journal, Volume 9, Issue 1, Pages 486-497, June 2017
DOI 10.32614/RJ-2017-026, PDF version

RcppCNPy: Read-Write Support for NumPy Files in R (with Wush Wu): Journal of Open Source Software, Volume 1, Issue 5, September 2016
DOI 10.21105/joss.00055
RProtoBuf: Efficient Cross-Language Data Serialization in R (with Murray Stokely and Jeroen Ooms): Journal of Statistical Software, Volume 71, Issue 2, July 2016
DOI 10.18637/jss.v071.i02

RcppArmadillo: Accelerating R with high-performance C++ linear algebra (with Conrad Sanderson): Computational Statistics & Data Analysis, Volume 71, March 2014, Pages 1054-1063.
DOI 10.1016/j.csda.2013.02.005.
Pre-print also available as a vignette in R package RcppArmadillo. Local copy of pre-print (~178 kBytes)

Seamless R and C++ Integration with Rcpp: UseR! Series, Springer, June 2013, 220 pages.
Soft-cover version (ISBN 978-1-4614-6867-7) and e-book (ISBN 978-1-4614-6868-4).
Springer page, and Rcpp site page
Fast and Elegant Numerical Linear Algebra Using the RcppEigen Package (with Douglas Bates): Journal of Statistical Software, Volume 52, Issue 5, February 2013
Journal page with paper; Local copy of associated package (~337 kBytes)

Review of R for Dummies by A. De Vries and J. Meys: Journal of Statistical Software, Vol 50, Book Review 1, August 2012.
Local copy of pre-print (~176 kBytes)
Review of R in Action by R. Kabacoff: Journal of Statistical Software, Vol 46, Book Review 2, February 2012.
Local copy of pre-print (~167 kBytes)

Rcpp: Seamless R and C++ Integration (with Romain Francois): Journal of Statistical Software, Volume 40, Issue 8, April 2011
Journal page with paper; Local copy of vignette (~350 kBytes)
Review of R in a Nutshell by J. Adler: Journal of Statistical Software, Vol 40, Book Review 1, April 2011.
Local copy of pre-print (~207 kBytes)

Review of Computational Statistics: An Introduction to R by G. Sawitzki: Journal of Statistical Software, Vol 32, Book Review 2, Dec 2009.
Local copy of pre-print (~114 kBytes)
State-of-the-art in Parallel Computing with R (with Markus Schmidberger [lead author], Martin Morgan, Hao Yu, Luke Tierney and Ulrich Mansmann): Journal of Statistical Software, Volume 31, Issue 1, August 2009
Journal page with paper; Local copy of pre-print (~525 kBytes)
Review of Analysis of Integrated and Cointegrated Time Series with R (2nd ed) by B. Pfaff: Journal of Statistical Software, Vol 30, Book Review 5, Apr 2009.
Local copy of pre-print (~112 kBytes)
Review of Applied Econometrics with R by C. Kleiber and A. Zeileis: Journal of Statistical Software, Vol 29, Book Review 14, Feb 2009.
Local copy of pre-print (~136 kBytes)
State-of-the-art in Parallel Computing with R (with Markus Schmidberger [lead author], Martin Morgan, Hao Yu, Luke Tierney and Ulrich Mansmann): Ludwig-Maximilians Univ Munich, Dept of Statistics, Technical Report No 47, Jan 2009
Local copy of Technical Report (~525 kBytes)

Quantian: A Comprehensive Statistical Computing Environment (with Chris Lawrence): The Political Methodologist, Volume 13, Number 2, Fall 2005
Final version (~100 kBytes)

Quantian: A Scientific Computing Environment: K. Hornik, F. Leisch and A. Zeileis (eds.), Proceedings of the 3rd International Workshop on Distributed Statistical Computing (DSC 2003), ISSN 1609-395X, March 2003.
Revised version, accepted for publication (~215 kBytes)
Review of 'Modeling Financial Time Series with S-Plus' by Eric Zivot and Jiahui Wang.: Short Book Reviews, International Statistics Institute. Dec. 2003.
Review (~44 kByte)

Econometrics with Octave: Journal of Applied Econometrics, Vol. 15, No. 5, pp. 531-542, December 2000.
PDF version of final draft (~250 kBytes)

Display and Interactive Languages for the Internet: HTML, PDF, and Java (with William L. Goffe): Computational Economics, Vol. 14, No. 1, pp. 89-107, October 1999.
Postscript version of paper for US letter paper (315 kBytes)

A Code Archive for Economics and Econometrics: Computational Economics, Vol. 10, No. 4, pp 353-357, November 1997.
Postscript version of paper for US letter paper (96 kBytes)

Object-Oriented Econometrics: Matrix Programming in C++ using GCC and Newmat: Journal of Applied Econometrics, Vol. 11, No. 2, pp 199-209, March 1996.
gzipped Postscript version of article (46 kBytes)

Last modified: Thu Mar 14 07:37:18 CDT 2024