Title: Arrays with arbitrary offsets
Description: Generalise the starting point of the array index
Diff between Oarray versions 1.4 dated 2007-10-03 and 1.4-2 dated 2008-05-09
DESCRIPTION | 4 ++-- R/Oarray.R | 52 ++++++++++++++++++++++++++++++++++++++++++---------- man/Oarray.Rd | 28 +++++++++++++++++++++++----- man/internal.Rd | 10 ++++------ 4 files changed, 71 insertions(+), 23 deletions(-)
More information about Oarray at CRAN
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Package multipol updated to version 1.0-2 with previous version 1.0-1 dated 2008-04-22
Author: Robin K. S. Hankin
Title: multivariate polynomials
Description: Various utilities to manipulate multivariate polynomials
Diff between multipol versions 1.0-1 dated 2008-04-22 and 1.0-2 dated 2008-05-09
DESCRIPTION | 4 ++-- R/multipol.R | 11 +++++------ man/Ops.multipol.Rd | 18 ++++++++++++------ man/as.array.Rd | 3 ++- man/trim.Rd | 9 ++++----- 5 files changed, 25 insertions(+), 20 deletions(-)
More information about multipol at CRAN
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Package modeltools updated to version 0.2-15 with previous version 0.2-14 dated 2007-09-26
Author: Torsten Hothorn, Friedrich Leisch, Achim Zeileis
Title: Tools and Classes for Statistical Models
Description: A collection of tools to deal with statistical models.
The functionality is experimental and the user interface is likely to
change in the future. The documentation is rather terse, but packages `coin'
and `party' have some working examples. However, if you find the
implemented ideas interesting we would be very interested in a discussion
of this proposal. Contributions are more than welcome!
Diff between modeltools versions 0.2-14 dated 2007-09-26 and 0.2-15 dated 2008-05-09
CHANGES | 12 ++++++++++++ DESCRIPTION | 6 +++--- NAMESPACE | 4 ++-- R/Generics.R | 4 ++-- R/Methods.R | 27 ++++++++++++++++++++++----- R/NAhandling.R | 6 +++--- inst/CHANGES | 12 ++++++++++++ man/Generics.Rd | 6 +++--- man/ModelEnv-class.Rd | 16 +++++++++++++--- tests/regtest.R | 6 ++++++ 10 files changed, 78 insertions(+), 21 deletions(-)
More information about modeltools at CRAN
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Package flexmix updated to version 2.1-0 with previous version 2.0-2 dated 2008-03-26
Author: Friedrich Leisch and Bettina Gruen
Title: Flexible Mixture Modeling
Description: FlexMix implements a general framework for finite
mixtures of regression models using the EM algorithm.
FlexMix provides the E-step and all data handling, while the M-step can be
supplied by the user to easily define new models. Existing drivers
implement mixtures of standard linear models, generalized linear
models and model-based clustering.
Diff between flexmix versions 2.0-2 dated 2008-03-26 and 2.1-0 dated 2008-05-09
DESCRIPTION | 8 NAMESPACE | 2 NEWS | 10 R/allGenerics.R | 6 R/flexmix.R | 6 R/infocrit.R | 4 R/plot-flexmix.R | 4 R/plot.R | 4 R/refit.R | 9 inst/NEWS | 10 inst/doc/flexmix-intro.Rnw | 4 inst/doc/flexmix-intro.pdf | 1619 +++---- inst/doc/regression-examples.Rnw | 14 inst/doc/regression-examples.pdf | 8007 +++++++++++++++++++-------------------- man/FLXmclust.Rd | 6 man/flexmix.Rd | 6 man/patent.Rd | 4 man/plot-methods.Rd | 2 man/posterior.Rd | 10 man/salmonellaTA98.Rd | 4 tests/binomial.R | 4 tests/binomial.Rout.save | 4 tests/restart.R | 4 23 files changed, 4886 insertions(+), 4865 deletions(-)
More information about flexmix at CRAN
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Package flexclust updated to version 0.99-0 with previous version 0.9-1 dated 2007-05-03
Author: Friedrich Leisch
Title: Flexible Cluster Algorithms
Description: The main function kcca implements a general framework for
k-centroids cluster analysis supporting arbitrary
distance/similarity measures and centroid computation. Further
cluster methods include hard competitive learning, neural gas and QT
clustering.
Diff between flexclust versions 0.9-1 dated 2007-05-03 and 0.99-0 dated 2008-05-09
DESCRIPTION | 10 ++--- NAMESPACE | 11 ++++-- NEWS | 43 +++++++++++++++++++++++++ R/barplot.R | 55 +++++++++++++++++++++++++------- R/cclust.R | 22 ++++++++----- R/info.R | 7 ++-- R/kcca.R | 53 +++++++++++++++++++++++-------- R/plot.R | 79 ++++++++++++++++++++++++++++++++++++++--------- R/predict.R | 6 +-- R/projAxes.R | 14 ++++---- R/qtclust.R | 56 ++++++++++++++++++++++++--------- R/tour.R |only R/utils.R | 82 ++++++++++++++++++++++++++++++++++++++----------- data/dentitio.txt | 4 +- inst/CITATION | 68 ++++++++++++++++++++++++++++++++++++++-- inst/NEWS | 43 +++++++++++++++++++++++++ man/barplot-methods.Rd | 16 ++++----- man/cclust.Rd | 10 +++-- man/conversion.Rd | 6 +-- man/flxColors.Rd |only man/info.Rd | 2 - man/kcca.Rd | 47 +++++++++++++++++++++++----- man/plot-methods.Rd | 35 +++++++++++--------- man/predict-methods.Rd | 16 ++++----- man/projAxes.Rd | 4 +- man/qtclust.Rd | 39 ++++++++++++++++++----- man/randomTour.Rd |only man/stepFlexclust.Rd | 6 ++- tests/randomTour.R |only 29 files changed, 570 insertions(+), 164 deletions(-)
More information about flexclust at CRAN
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Thu, 08 May 2008
Package vcd updated to version 1.0-8 with previous version 1.0-6 dated 2007-10-16
Author: David Meyer, Achim Zeileis, Kurt Hornik
Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was inspired by the book "Visualizing Categorical Data"
by Michael Friendly.
Diff between vcd versions 1.0-6 dated 2007-10-16 and 1.0-8 dated 2008-05-08
DESCRIPTION | 6 R/Ord_plot.R | 2 R/assoc.R | 2 R/cd_plot.R | 2 R/cotabplot.R | 58 R/distplot.R | 8 R/doubledeckerplot.R | 2 R/fourfold.R | 26 R/goodfit.R | 21 R/labeling.R | 50 R/legends.R | 26 R/mosaic.R | 2 R/rootogram.R | 2 R/sieve.R | 2 R/spacings.R | 2 R/spine.R | 2 R/strucplot.R | 34 R/structable.R | 14 R/ternaryplot.R | 14 demo/mondrian.R | 3 inst/CITATION | 3 inst/doc/Rplots.ps |39208 +++++++++++----------- inst/doc/Z.cls |only inst/doc/bkde.png |binary inst/doc/bkde2.png |binary inst/doc/class.png |binary inst/doc/hcl-colors-arthritis1.pdf | 96 inst/doc/hcl-colors-pal-d1.pdf | 6 inst/doc/hcl-colors-pal-q1.pdf | 6 inst/doc/hcl-colors-pal-s1.pdf | 6 inst/doc/hcl-colors-seats1.pdf | 6 inst/doc/hcl-colors-votes1.pdf | 6 inst/doc/hcl-colors.aux | 18 inst/doc/hcl-colors.log | 282 inst/doc/hcl-colors.pdf | 3684 +- inst/doc/jss.bst |only inst/doc/residual-shadings-Arthritis-classic1.pdf | 6 inst/doc/residual-shadings-Punishment-assoc1.pdf | 346 inst/doc/residual-shadings-Punishment-mosaic1.pdf | 202 inst/doc/residual-shadings-alzheimer-plot1.pdf | 106 inst/doc/residual-shadings-shadings.pdf | 6 inst/doc/residual-shadings.aux | 10 inst/doc/residual-shadings.blg | 2 inst/doc/residual-shadings.log | 277 inst/doc/residual-shadings.pdf | 3609 +- inst/doc/strucplot-Arthritis.eps | 72 inst/doc/strucplot-Arthritis.pdf | 94 inst/doc/strucplot-Conditioningfig.eps | 74 inst/doc/strucplot-Conditioningfig.pdf | 100 inst/doc/strucplot-Expectedfig.eps | 98 inst/doc/strucplot-Expectedfig.pdf | 120 inst/doc/strucplot-Observedfig.eps | 98 inst/doc/strucplot-Observedfig.pdf | 104 inst/doc/strucplot-PreSex.eps | 104 inst/doc/strucplot-PreSex.pdf | 126 inst/doc/strucplot-Residualsfig.eps | 226 inst/doc/strucplot-Residualsfig.pdf | 248 inst/doc/strucplot-Titanic.pdf | 6 inst/doc/strucplot-UCBAdmissions.eps | 216 inst/doc/strucplot-UCBAdmissions.pdf | 238 inst/doc/strucplot-Variablesfig.pdf | 6 inst/doc/strucplot-arthritisfig.eps | 74 inst/doc/strucplot-arthritisfig.pdf | 96 inst/doc/strucplot-artspinefig.eps | 26 inst/doc/strucplot-artspinefig.pdf | 32 inst/doc/strucplot-bundesligafig.pdf | 6 inst/doc/strucplot-changeplotfig.eps | 116 inst/doc/strucplot-changeplotfig.pdf | 122 inst/doc/strucplot-cotabplotfig.eps | 76 inst/doc/strucplot-cotabplotfig.pdf | 86 inst/doc/strucplot-haireyefig1.pdf | 6 inst/doc/strucplot-haireyefig2.pdf | 6 inst/doc/strucplot-haireyefig3.pdf | 6 inst/doc/strucplot-interpolatefig.pdf | 6 inst/doc/strucplot-label1fig.pdf | 6 inst/doc/strucplot-label2fig.eps | 348 inst/doc/strucplot-label2fig.pdf | 394 inst/doc/strucplot-label3fig.eps | 352 inst/doc/strucplot-label3fig.pdf | 386 inst/doc/strucplot-listfig.pdf | 6 inst/doc/strucplot-ocdoubledecker.pdf | 6 inst/doc/strucplot-ocmosaicnull.eps | 119 inst/doc/strucplot-ocmosaicnull.pdf | 141 inst/doc/strucplot-ocmosaicstage.eps | 95 inst/doc/strucplot-ocmosaicstage.pdf | 117 inst/doc/strucplot-ocpairs.pdf | 6 inst/doc/strucplot-pairsfig.pdf | 6 inst/doc/strucplot-recyclingfig.eps | 136 inst/doc/strucplot-recyclingfig.pdf | 166 inst/doc/strucplot-shading1fig.eps | 20 inst/doc/strucplot-shading1fig.pdf | 26 inst/doc/strucplot-sievefig.eps | 1330 inst/doc/strucplot-sievefig.pdf | 736 inst/doc/strucplot-spacingfig.eps | 104 inst/doc/strucplot-spacingfig.pdf | 126 inst/doc/strucplot-splitfig.eps | 98 inst/doc/strucplot-splitfig.pdf | 120 inst/doc/strucplot-ucbfig.eps | 20 inst/doc/strucplot-ucbfig.pdf | 26 inst/doc/strucplot-vcdlayout.pdf | 6 inst/doc/strucplot-viewportnamesfig.eps | 56 inst/doc/strucplot-viewportnamesfig.pdf | 70 inst/doc/strucplot.aux | 74 inst/doc/strucplot.log | 346 inst/doc/strucplot.pdf |binary inst/doc/vcd.bib |only man/MSPatients.Rd | 3 man/agreementplot.Rd | 3 man/assocstats.Rd | 2 man/labeling_border.Rd | 3 man/oddsratio.Rd | 2 man/strucplot.Rd | 2 112 files changed, 28106 insertions(+), 28102 deletions(-)
More information about vcd at CRAN
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Package tseries updated to version 0.10-15 with previous version 0.10-14 dated 2008-02-26
Author: Compiled by Adrian Trapletti
Diff between tseries versions 0.10-14 dated 2008-02-26 and 0.10-15 dated 2008-05-08
More information about tseries at CRAN
Package scatterplot3d updated to version 0.3-27 with previous version 0.3-26 dated 2008-05-02 Author: Uwe Ligges
Diff between scatterplot3d versions 0.3-26 dated 2008-05-02 and 0.3-27 dated 2008-05-08
More information about scatterplot3d at CRAN
Package RFreak updated to version 0.2-1 with previous version 0.2-0 dated 2007-12-24 Author: Robin Nunkesser
Diff between RFreak versions 0.2-0 dated 2007-12-24 and 0.2-1 dated 2008-05-08
More information about RFreak at CRAN
New package BCE with initial version 1.1
More information about BCE at CRAN
New package tframePlus with initial version 2008.5-1
More information about tframePlus at CRAN
Package tframe updated to version 2008.5-1 with previous version 2007.5-3 dated 2007-07-13 Author: Paul Gilbert
Diff between tframe versions 2007.5-3 dated 2007-07-13 and 2008.5-1 dated 2008-05-08
More information about tframe at CRAN
Package ljr updated to version 1.2-0 with previous version 1.1-0 dated 2008-02-24 Author: Michal Czajkowski, Ryan Gill, Greg Rempala
Diff between ljr versions 1.1-0 dated 2008-02-24 and 1.2-0 dated 2008-05-08
More information about ljr at CRAN
Package epiR updated to version 0.9-6 with previous version 0.9-5 dated 2008-04-29 Author: Mark Stevenson
Diff between epiR versions 0.9-5 dated 2008-04-29 and 0.9-6 dated 2008-05-08
More information about epiR at CRAN
Package ape updated to version 2.2 with previous version 2.1-3 dated 2008-03-21 Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong,
Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel,
Gangolf Jobb, Christoph Heibl, Vincent Lefort, Jim Lemon,
Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Korbinian Strimmer,
Damien de Vienne
Diff between ape versions 2.1-3 dated 2008-03-21 and 2.2 dated 2008-05-08
More information about ape at CRAN
Package TSpadi updated to version 2008.5-1 with previous version 2007.10-1 dated 2007-11-03 Author: Paul Gilbert
Diff between TSpadi versions 2007.10-1 dated 2007-11-03 and 2008.5-1 dated 2008-05-08
More information about TSpadi at CRAN
Package TSdbi updated to version 2008.5-1 with previous version 2007.10-1 dated 2007-10-27 Author: Paul Gilbert
Diff between TSdbi versions 2007.10-1 dated 2007-10-27 and 2008.5-1 dated 2008-05-08
More information about TSdbi at CRAN
Package TSSQLite updated to version 2008.5-1 with previous version 2007.10-1 dated 2007-11-03 Author: Paul Gilbert
Diff between TSSQLite versions 2007.10-1 dated 2007-11-03 and 2008.5-1 dated 2008-05-08
More information about TSSQLite at CRAN
Package TSMySQL updated to version 2008.5-1 with previous version 2007.10-1 dated 2007-11-05 Author: Paul Gilbert
Diff between TSMySQL versions 2007.10-1 dated 2007-11-05 and 2008.5-1 dated 2008-05-08
More information about TSMySQL at CRAN
New package RCurl with initial version 0.9-2
More information about RCurl at CRAN
Package GPArotation updated to version 2008.05-1 with previous version 2007.06-1 dated 2007-06-10 Author: Coen Bernaards and Robert Jennrich
Diff between GPArotation versions 2007.06-1 dated 2007-06-10 and 2008.05-1 dated 2008-05-08
More information about GPArotation at CRAN
Package EMD updated to version 1.1.0 with previous version 1.0.0 dated 2008-03-29 Author: Donghoh Kim
Diff between EMD versions 1.0.0 dated 2008-03-29 and 1.1.0 dated 2008-05-08
More information about EMD at CRAN
Package qAnalyst updated to version 0.5.2 with previous version 0.5.1 dated 2008-02-19 Author: Andrea Spano' and Giorgio Spedicato
Diff between qAnalyst versions 0.5.1 dated 2008-02-19 and 0.5.2 dated 2008-05-07
More information about qAnalyst at CRAN
New package singlecase with initial version 0.1
More information about singlecase at CRAN
Package neuralnet updated to version 1.1 with previous version 1.0 dated 2008-04-15 Author: Stefan Fritsch
Diff between neuralnet versions 1.0 dated 2008-04-15 and 1.1 dated 2008-05-07
More information about neuralnet at CRAN
Package gnm updated to version 0.9-4 with previous version 0.9-3 dated 2007-09-10 Author: Heather Turner and David Firth
Diff between gnm versions 0.9-3 dated 2007-09-10 and 0.9-4 dated 2008-05-07
More information about gnm at CRAN
Package gRc updated to version 0.2.1 with previous version 0.2.0 dated 2008-04-25 Author: Søren Højsgaard
Diff between gRc versions 0.2.0 dated 2008-04-25 and 0.2.1 dated 2008-05-07
More information about gRc at CRAN
Package gRain updated to version 0.3.2 with previous version 0.3.1 dated 2008-05-02 Author: Søren Højsgaard
Diff between gRain versions 0.3.1 dated 2008-05-02 and 0.3.2 dated 2008-05-07
More information about gRain at CRAN
New package empiricalBayes with initial version 2.0
More information about empiricalBayes at CRAN
Package XML updated to version 1.95-1 with previous version 1.93-2 dated 2007-10-03 Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Diff between XML versions 1.93-2 dated 2007-10-03 and 1.95-1 dated 2008-05-07
More information about XML at CRAN
Package GenABEL updated to version 1.3-9 with previous version 1.3-7 dated 2008-04-17 Author: Yurii Aulchenko, Maksim Struchalin, with contributions from
Stephan Ripke and Toby Johnson
Diff between GenABEL versions 1.3-7 dated 2008-04-17 and 1.3-9 dated 2008-05-07
More information about GenABEL at CRAN
Package lpSolve updated to version 5.6.2 with previous version 5.6.1 dated 2008-04-28 Author: Michel Berkelaar and others
Diff between lpSolve versions 5.6.1 dated 2008-04-28 and 5.6.2 dated 2008-05-07
More information about lpSolve at CRAN
Package knncat updated to version 1.1.11 with previous version 1.1.10 dated 2006-05-29 Author: Sam Buttrey
Diff between knncat versions 1.1.10 dated 2006-05-29 and 1.1.11 dated 2008-05-07
More information about knncat at CRAN
Package knnTree updated to version 1.2.4 with previous version 1.2.3 dated 2004-11-16 Author: Sam Buttrey
Diff between knnTree versions 1.2.3 dated 2004-11-16 and 1.2.4 dated 2008-05-07
More information about knnTree at CRAN
Package Rsac updated to version 0.1-6 with previous version 0.1-5 dated 2007-10-14 Author: Eric M. Thompson
Diff between Rsac versions 0.1-5 dated 2007-10-14 and 0.1-6 dated 2008-05-07
More information about Rsac at CRAN
New package mrdrc with initial version 1.0-0
More information about mrdrc at CRAN
New package nparcomp with initial version 1.0-0
More information about nparcomp at CRAN
Title: Time series analysis and computational finance
Description: Package for time series analysis and computational finance
ChangeLog | 7 +++++++
DESCRIPTION | 6 +++---
R/finance.R | 2 +-
inst/CITATION | 3 ++-
4 files changed, 13 insertions(+), 5 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: 3D Scatter Plot
Description: Plots a three dimensional (3D) point cloud.
CHANGES | 1 +
DESCRIPTION | 7 ++++---
inst/CITATION | 2 +-
inst/doc/s3d.pdf | 6 +++---
4 files changed, 9 insertions(+), 7 deletions(-)
posted at: 09:18 | path: /cran/updated | permanent link to this entry
Title: R/FrEAK interface
Description: An R interface to a modified version of the Free Evolutionary Algorithm Kit FrEAK. FrEAK is a toolkit written in Java to design and analyze evolutionary algorithms. Both the R interface and an extended version of FrEAK are contained in the RFreak package. For more information on FrEAK see http://sourceforge.net/projects/freak427/.
DESCRIPTION | 13
inst/java/resource/freak/gui/help/footnode.html | 2
inst/java/resource/freak/gui/help/index.html | 482 +++++++++++-----------
inst/java/resource/freak/gui/help/node1.html | 4
inst/java/resource/freak/gui/help/node3.html | 268 ++++++------
inst/java/resource/freak/gui/help/node4.html | 284 ++++++------
inst/java/resource/freak/gui/help/node5.html | 186 ++++----
inst/java/resource/freak/gui/help/node6.html | 375 ++++++++---------
inst/java/resource/freak/gui/help/node7.html | 3
inst/java/resource/freak/gui/help/node8.html | 3
inst/java/resource/freak/gui/help/usersguide.html | 38 -
inst/java/run.cmd | 2
man/RFreak-package.Rd | 9
13 files changed, 834 insertions(+), 835 deletions(-)
posted at: 09:18 | path: /cran/updated | permanent link to this entry
Package: BCE
Version: 1.1
Title: Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
Author: Karel Van den Meersche
Maintainer: Karel Van den Meersche
Depends: R (>= 2.01), quadprog
Description: Function to estimates taxonomic compositions from biomarker data, using a Bayesian approach.
License: GPL
LazyData: yes
Packaged: Thu May 8 04:31:09 2008; theussl
posted at: 09:18 | path: /cran/new | permanent link to this entry
Package: tframePlus
Title: Time Frame coding kernel extensions
Description: Extensions and additional tframe utilities.
Depends: R (>= 2.5.0), tframe
Imports: tframe
Suggests: zoo, its
Version: 2008.5-1
Date: 2008-05-02
LazyLoad: yes
License: GPL-2 | file LICENSE
Author: Paul Gilbert
Maintainer: Paul Gilbert
URL: http://www.bank-banque-canada.ca/pgilbert
Packaged: Fri May 2 10:24:00 2008; paul
posted at: 05:18 | path: /cran/new | permanent link to this entry
Title: Time Frame coding kernel
Description: Functions for writing code that is independent of the way time is represented. See ?tframe.Intro for more details.
tframe-2007.5-3/tframe/INDEX |only
tframe-2007.5-3/tframe/R/its.R |only
tframe-2007.5-3/tframe/R/zoo.R |only
tframe-2007.5-3/tframe/help |only
tframe-2007.5-3/tframe/tests/zoo.R |only
tframe-2007.5-3/tframe/tframe-manual.pdf |only
tframe-2008.5-1/tframe/DESCRIPTION | 8
tframe-2008.5-1/tframe/NAMESPACE | 21 -
tframe-2008.5-1/tframe/NEWS | 9
tframe-2008.5-1/tframe/R/tframe.R | 6
tframe-2008.5-1/tframe/inst/doc/tframe.pdf | 398 ++++++++++++++---------------
tframe-2008.5-1/tframe/man/tframe.Rd | 8
tframe-2008.5-1/tframe/man/tfstart.Rd | 24 -
tframe-2008.5-1/tframe/man/tfwindow.Rd | 4
tframe-2008.5-1/tframe/tests/utils.R | 24 +
15 files changed, 240 insertions(+), 262 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Logistic Joinpoint Regression
Description: Fits and tests logistic joinpoint models.
ljr-1.1-0/ljr/R/ljr02.R |only
ljr-1.1-0/ljr/R/ljr12.R |only
ljr-1.1-0/ljr/R/ljr2.R |only
ljr-1.1-0/ljr/R/ljr22.R |only
ljr-1.1-0/ljr/R/ljrb2.R |only
ljr-1.1-0/ljr/R/ljrf2.R |only
ljr-1.1-0/ljr/man/ljr02.rd |only
ljr-1.1-0/ljr/man/ljr12.rd |only
ljr-1.1-0/ljr/man/ljr2.rd |only
ljr-1.1-0/ljr/man/ljr22.rd |only
ljr-1.1-0/ljr/man/ljrb2.rd |only
ljr-1.1-0/ljr/man/ljrf2.rd |only
ljr-1.1-0/ljr/src/backward2.c |only
ljr-1.1-0/ljr/src/fillfreeint.c |only
ljr-1.1-0/ljr/src/forward2.c |only
ljr-1.1-0/ljr/src/ljr2.c |only
ljr-1.1-0/ljr/src/ljr22.c |only
ljr-1.1-0/ljr/src/ljr2rmint.c |only
ljr-1.1-0/ljr/src/ljr2rmtm.c |only
ljr-1.1-0/ljr/src/test02.c |only
ljr-1.1-0/ljr/src/test12.c |only
ljr-1.2-0/ljr/DESCRIPTION | 18 +++++++++---------
ljr-1.2-0/ljr/R/firstlib.R | 2 +-
ljr-1.2-0/ljr/R/ljr0.R | 3 ++-
ljr-1.2-0/ljr/R/ljr01.R | 3 ++-
ljr-1.2-0/ljr/R/ljr1.R | 14 +++++++-------
ljr-1.2-0/ljr/R/ljr11.R | 3 ++-
ljr-1.2-0/ljr/R/ljrb.R | 3 ++-
ljr-1.2-0/ljr/R/ljrf.R | 3 ++-
ljr-1.2-0/ljr/R/ljrjk.R | 5 +++--
ljr-1.2-0/ljr/R/ljrk.R | 3 ++-
ljr-1.2-0/ljr/R/ljrkk.R | 3 ++-
ljr-1.2-0/ljr/data |only
ljr-1.2-0/ljr/man/kcm.rd |only
ljr-1.2-0/ljr/man/ljr0.rd | 28 ++++++----------------------
ljr-1.2-0/ljr/man/ljr01.rd | 28 ++++++----------------------
ljr-1.2-0/ljr/man/ljr1.rd | 29 ++++++-----------------------
ljr-1.2-0/ljr/man/ljr11.rd | 30 +++++++-----------------------
ljr-1.2-0/ljr/man/ljrb.rd | 29 +++++++----------------------
ljr-1.2-0/ljr/man/ljrf.rd | 29 +++++++----------------------
ljr-1.2-0/ljr/man/ljrjk.rd | 27 ++++++---------------------
ljr-1.2-0/ljr/man/ljrk.rd | 27 +++++----------------------
ljr-1.2-0/ljr/man/ljrkk.rd | 28 ++++++----------------------
ljr-1.2-0/ljr/src/fillfixed.c | 2 ++
ljr-1.2-0/ljr/src/fillfixedrm.c | 2 ++
ljr-1.2-0/ljr/src/fillfreermint.c |only
ljr-1.2-0/ljr/src/rgi.c | 3 ++-
47 files changed, 96 insertions(+), 226 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains functions
for directly and indirectly adjusting measures of disease frequency,
quantifying measures of association on the basis of single or multiple
strata of count data presented in a contingency table, and computing
confidence intervals around incidence risk and incidence rate estimates.
Miscellaneous functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 6
R/epi.ccc.r | 2
doc/epiR.pdf | 5775 ++++++++++++++++++++++++++++-----------------------------
man/epi.ccc.Rd | 32
4 files changed, 2903 insertions(+), 2912 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Analyses of Phylogenetics and Evolution
Description: ape provides functions for reading, writing, plotting,
and manipulating phylogenetic trees, analyses of comparative data
in a phylogenetic framework, analyses of diversification and
macroevolution, computing distances from allelic and nucleotide
data, reading nucleotide sequences, and several tools such as
Mantel's test, computation of minimum spanning tree, the population
parameter theta based on various approaches, nucleotide diversity,
generalized skyline plots, estimation of absolute evolutionary rates
and clock-like trees using mean path lengths, non-parametric rate
smoothing and penalized likelihood, classifying genes in trees using
the Klastorin-Misawa-Tajima approach. Phylogeny estimation can be done
with the NJ, BIONJ, ME, and ML methods.
Changes | 48 ++++++++
DESCRIPTION | 13 +-
R/DNA.R | 9 -
R/PGLS.R | 84 +++++++++++++++
R/chronopl.R | 265 ++++++++++++++++++++++++++++++++++---------------
R/cophyloplot.R |only
R/dist.topo.R | 168 ++++++++++++++++++-------------
R/drop.tip.R | 22 ++--
R/multi2di.R | 4
R/plot.phylo.R | 9 -
R/plotPhyloCoor.R |only
R/read.dna.R | 8 -
R/rtree.R | 41 +++----
R/subtreeplot.R |only
R/subtrees.R |only
R/summary.phylo.R | 3
R/zoom.R | 8 -
Thanks | 22 ++--
inst/doc/MoranI.pdf |binary
man/ape-internal.Rd | 2
man/boot.phylo.Rd | 9 +
man/chronopl.Rd | 57 ++++++++--
man/compar.cheverud.Rd | 2
man/consensus.Rd | 13 ++
man/cophyloplot.Rd |only
man/corBlomberg.Rd |only
man/corClasses.Rd | 29 +++--
man/corPagel.Rd |only
man/plot.phylo.Rd | 10 +
man/subtreeplot.Rd |only
man/subtrees.Rd |only
31 files changed, 579 insertions(+), 247 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: TSdbi Interface to PADI Time Series Server (for e.g. Fame)
Description: Provides methods for generics in the TSdbi package to
connect through a protocol for application database interface (PADI)
to a time series database (e.g. Fame).
DESCRIPTION | 9 +++++----
NEWS | 5 +++++
inst/doc/TSpadiFame.pdf |binary
3 files changed, 10 insertions(+), 4 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Time Series Database Interface
Description: TSdbi provides an common interface to time series databases.
DESCRIPTION | 8 ++++----
NAMESPACE | 3 ++-
NEWS | 10 +++++++++-
R/TSdbi.R | 14 ++++++++------
R/TSquery.R |only
S4checks.R.tex |only
inst/doc/TSdbi.pdf |binary
man/TSquery.Rd |only
tests/S4checks.R |only
9 files changed, 23 insertions(+), 12 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Time Series Database Interface extentions for SQLite
Description: TSSQLite provides a SQLite interface for TSdbi.
DESCRIPTION | 10 +++++-----
Rplots.pdf |only
inst/doc/TSSQLite.pdf |binary
test |binary
4 files changed, 5 insertions(+), 5 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Time Series Database Interface extensions for MySQL
Description: TSMySQL provides a MySQL interface for TSdbi.
DESCRIPTION | 10 +++++-----
Rplots.pdf |only
S4checks.R.tex |only
inst/doc/TSMySQL.pdf |binary
4 files changed, 5 insertions(+), 5 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Package: RCurl
Version: 0.9-2
Title: HTTP request interface
Author: Duncan Temple Lang
SystemRequirements: curl (version 7.12.0 or higher) http://curl.haxx.se
Maintainer: Duncan Temple Lang
Description: The package allows one to compose HTTP requests to fetch URIs, post forms,
etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP connection and the form
of the request while providing a higher-level interface than is available just
using R socket connections. Additionally, the underlying implementation is robust
and extensive, supporting SSL/HTTPS, cookies, redirects, authentication, etc.
License: BSD
LazyLoad: true
Depends: methods
URL: http://www.omegahat.org/RCurl
Limitations:
One doesn't yet have full control over the contents of a POST form such as specifying
files, content type.
Error handling uses a single global variable at present.
Note: This will be used generally to communicate with HTTP servers and specifically
in the SOAP package, HTML forms and for accessing data on Web sites that require
more state information than simply URL access (e.g. cookies).
Check: To run R CMD check, one really needs network access. It is an HTTP client!
This can be problematic as a Web site may be down when you run
but the real tests are important.
Packaged: Thu May 8 02:28:19 2008; duncan
posted at: 05:18 | path: /cran/new | permanent link to this entry
Title: GPA Factor Rotation
Description: Gradient Projection Algorithm Rotation for Factor Analysis. See ?GPArotation.Intro for more details.
GPArotation-2007.06-1/GPArotation/GPArotation-manual.pdf |only
GPArotation-2007.06-1/GPArotation/INDEX |only
GPArotation-2007.06-1/GPArotation/help |only
GPArotation-2008.05-1/GPArotation/DESCRIPTION | 8 ++++----
GPArotation-2008.05-1/GPArotation/LICENSE | 2 +-
GPArotation-2008.05-1/GPArotation/NAMESPACE | 9 ++++++---
GPArotation-2008.05-1/GPArotation/NEWS | 9 +++++++++
GPArotation-2008.05-1/GPArotation/R/GPArotation.R | 4 ++--
GPArotation-2008.05-1/GPArotation/R/echelon.R |only
GPArotation-2008.05-1/GPArotation/R/eiv.R | 4 ++--
GPArotation-2008.05-1/GPArotation/Rplots.pdf |only
GPArotation-2008.05-1/GPArotation/inst/doc/GPArotation.pdf |binary
GPArotation-2008.05-1/GPArotation/man/GPA.Rd | 2 +-
GPArotation-2008.05-1/GPArotation/man/echelon.Rd |only
GPArotation-2008.05-1/GPArotation/man/eiv.Rd | 5 +++--
GPArotation-2008.05-1/GPArotation/man/rotations.Rd | 9 ++++++---
16 files changed, 34 insertions(+), 18 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Empirical Mode Decomposition and Hilbert Spectral Analysis
Description: This package carries out empirical mode decompostion and Hilbert spectral
analysis.
DESCRIPTION | 8 ++++----
R/EMD1d.R | 6 +++++-
man/emd2d.Rd | 2 +-
man/extrema.Rd | 6 +++---
4 files changed, 13 insertions(+), 9 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entryWed, 07 May 2008
Title: Variables and Attributes Control Charts
Description: qAnalyst performs: control charts for variables and attributes according to Douglas C. Montgomery Introduction to Statistical Quality Control book, Capability analysis for normal and non - normal distributions and Distributions Identification
DESCRIPTION | 8 ++++----
R/capabilityNormal.R | 10 +++++-----
R/getParameterFun.R | 4 ++--
R/spc.R | 2 +-
README | 4 ++++
man/capabilityNormal.Rd | 34 +++++++++++++++++++---------------
man/spc.Rd | 5 ++---
7 files changed, 37 insertions(+), 30 deletions(-)
posted at: 13:19 | path: /cran/updated | permanent link to this entry
Package: singlecase
Type: Package
Title: statistical tests for single case studies in neuropsychology
Version: 0.1
Date: 2008-05-07
Author: Matthieu Dubois
Maintainer: Matthieu Dubois
Description: The singlecase package implements various functions for the single-case research in neuropsychology. Currently, the functions that are implemented were all originally developed by John Crawford, Paul Garthwaite and colleagues. These functions mainly deal with the comparison of a patient's test score (or score difference) to a control or normative sample. These methods also provide a point estimate of the percentage of the population that would obtain a more extreme score (or score difference) and, for some problems, an accompanying interval estimate (i.e., confidence limits) on this percentage.
License: GPL version 2 or newer
URL: http://www.code.ucl.ac.be/MatthieuDubois/r_code.html
Packaged: Wed May 7 16:55:50 2008; hornik
posted at: 13:19 | path: /cran/new | permanent link to this entry
Title: Training of neural networks
Description: Training of neural networks using the Resilient Backpropagation with (Riedmiller, 1994) or without Weightbacktracking (Riedmiller, 1993) or the modified globally convergent version by Anastasiadis et. al. (2005). The package allows flexible settings through custom-choice of error- and activation-function. Furthermore the calculation of generalized weights (Intrator O & Intrator N, 1993) is implemented.
DESCRIPTION | 8 ++++----
R/plot.nn.r | 2 +-
man/neuralnet-package.Rd | 4 ++--
3 files changed, 7 insertions(+), 7 deletions(-)
posted at: 13:19 | path: /cran/updated | permanent link to this entry
Title: Generalized Nonlinear Models
Description: Functions to specify and fit generalized nonlinear models, including models with multiplicative interaction terms such as the UNIDIFF model from sociology and the AMMI model from crop science, and many others. Over-parameterized representations of models are used throughout; functions are provided for inference on estimable parameter combinations, as well as standard methods for diagnostics etc.
gnm-0.9-3/gnm/R/DrefVariables.R |only
gnm-0.9-3/gnm/inst/CHANGES |only
gnm-0.9-3/gnm/inst/doc/gnmOverview.Rnw |only
gnm-0.9-3/gnm/man/Log.Rd |only
gnm-0.9-3/gnm/man/Logit.Rd |only
gnm-0.9-3/gnm/man/Raise.Rd |only
gnm-0.9-4/gnm/.directory |only
gnm-0.9-4/gnm/DESCRIPTION | 28
gnm-0.9-4/gnm/NAMESPACE | 13
gnm-0.9-4/gnm/R/Const.R | 10
gnm-0.9-4/gnm/R/Diag.R | 11
gnm-0.9-4/gnm/R/Exp.R | 3
gnm-0.9-4/gnm/R/Inv.R | 17
gnm-0.9-4/gnm/R/Log.R | 17
gnm-0.9-4/gnm/R/Logit.R | 17
gnm-0.9-4/gnm/R/Mult.R | 6
gnm-0.9-4/gnm/R/MultHomog.R | 21
gnm-0.9-4/gnm/R/Nonlin.R | 6
gnm-0.9-4/gnm/R/Raise.R | 17
gnm-0.9-4/gnm/R/Symm.R | 17
gnm-0.9-4/gnm/R/anova.gnm.R | 40
gnm-0.9-4/gnm/R/asGnm.glm.R | 1
gnm-0.9-4/gnm/R/asGnm.lm.R | 1
gnm-0.9-4/gnm/R/checkCall.R | 12
gnm-0.9-4/gnm/R/cholInv.R | 156 -
gnm-0.9-4/gnm/R/cholInv1.R | 68
gnm-0.9-4/gnm/R/confint.gnm.R | 26
gnm-0.9-4/gnm/R/confint.profile.gnm.R | 50
gnm-0.9-4/gnm/R/fitted.gnm.R |only
gnm-0.9-4/gnm/R/getData.R | 12
gnm-0.9-4/gnm/R/gnm.R | 75
gnm-0.9-4/gnm/R/gnmStart.R | 8
gnm-0.9-4/gnm/R/gnmTerms.R | 25
gnm-0.9-4/gnm/R/gnmTools.R | 23
gnm-0.9-4/gnm/R/hashSplit.R | 42
gnm-0.9-4/gnm/R/hatvalues.gnm.R | 4
gnm-0.9-4/gnm/R/instances.R | 22
gnm-0.9-4/gnm/R/nonlinTerms.R | 421 +--
gnm-0.9-4/gnm/R/ofInterest.R | 6
gnm-0.9-4/gnm/R/ofInterestReplacement.R | 22
gnm-0.9-4/gnm/R/parameters.R | 4
gnm-0.9-4/gnm/R/pickCoef.R | 48
gnm-0.9-4/gnm/R/plot.gnm.R | 96
gnm-0.9-4/gnm/R/plot.profile.gnm.R | 42
gnm-0.9-4/gnm/R/predict.gnm.R | 94
gnm-0.9-4/gnm/R/print.gnm.R | 7
gnm-0.9-4/gnm/R/print.profile.gnm.R | 29
gnm-0.9-4/gnm/R/print.summary.gnm.R | 18
gnm-0.9-4/gnm/R/profile.gnm.R | 276 +-
gnm-0.9-4/gnm/R/qrSolve.R | 78
gnm-0.9-4/gnm/R/residuals.gnm.R | 12
gnm-0.9-4/gnm/R/rstandard.gnm.R | 2
gnm-0.9-4/gnm/R/sumExpression.R | 14
gnm-0.9-4/gnm/R/termPredictors.gnm.R | 11
gnm-0.9-4/gnm/R/weighted.MM.R | 22
gnm-0.9-4/gnm/R/weights.gnm.R |only
gnm-0.9-4/gnm/R/zzz.R | 6
gnm-0.9-4/gnm/demo/gnm.R | 64
gnm-0.9-4/gnm/inst/.directory |only
gnm-0.9-4/gnm/inst/CITATION | 32
gnm-0.9-4/gnm/inst/NEWS |only
gnm-0.9-4/gnm/inst/doc/.directory |only
gnm-0.9-4/gnm/inst/doc/gnmOverview.pdf | 3630 ++++++++++++++----------------
gnm-0.9-4/gnm/man/Const.Rd | 78
gnm-0.9-4/gnm/man/Exp.Rd | 94
gnm-0.9-4/gnm/man/Inv.Rd | 100
gnm-0.9-4/gnm/man/confint.gnm.Rd | 212 -
gnm-0.9-4/gnm/man/gnm.Rd | 20
gnm-0.9-4/gnm/man/instances.Rd | 90
gnm-0.9-4/gnm/man/model.matrix.gnm.Rd | 64
gnm-0.9-4/gnm/man/nonlin.function.Rd | 353 +-
gnm-0.9-4/gnm/man/ofInterest.Rd | 130 -
gnm-0.9-4/gnm/man/parameters.Rd | 66
gnm-0.9-4/gnm/man/pickCoef.Rd | 122 -
gnm-0.9-4/gnm/man/predict.gnm.Rd |only
gnm-0.9-4/gnm/man/profile.gnm.Rd | 362 +-
gnm-0.9-4/gnm/man/qrSolve.Rd | 122 -
gnm-0.9-4/gnm/tests/RC.Rout.save | 94
gnm-0.9-4/gnm/tests/RChomog.Rout.save | 96
gnm-0.9-4/gnm/tests/biplot.Rout.save | 70
gnm-0.9-4/gnm/tests/diagonalRef.Rout.save | 100
gnm-0.9-4/gnm/tests/gammi.Rout.save | 76
gnm-0.9-4/gnm/tests/nls.R | 18
gnm-0.9-4/gnm/tests/stereotype.Rout.save | 96
gnm-0.9-4/gnm/tests/unidiff.Rout.save | 84
85 files changed, 4118 insertions(+), 4011 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
Description: Estimation, model selection and other aspects of statistical inference in Graphical Gaussian models with edge and vertex symmetries (Graphical Gaussian models with colours)
gRc-0.2.0/gRc/src/rconipm.c |only
gRc-0.2.1/gRc/ChangeLog | 6 +
gRc-0.2.1/gRc/DESCRIPTION | 4
gRc-0.2.1/gRc/R/getScoreAndInformation4.R | 1
gRc-0.2.1/gRc/R/rcox-Scoring.R | 7 +
gRc-0.2.1/gRc/R/sets-SetOp-Lists.R | 44 -------
gRc-0.2.1/gRc/R/switchThetaK4.R | 84 +++++++++++++++
gRc-0.2.1/gRc/R/xxx2yyy.R | 20 +--
gRc-0.2.1/gRc/src/clevertrace.c | 118 ++++++++++-----------
gRc-0.2.1/gRc/src/rconipm2.c |only
gRc-0.2.1/gRc/src/shd_utils.c | 167 +++++++++++++++++++++++-------
gRc-0.2.1/gRc/src/shd_utils.h | 5
12 files changed, 304 insertions(+), 152 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Graphical Independence Networks
Description: A package for probability propagation in graphical independence networks, also known as probabilistic expert systems (which includes Bayesian networks as a special case).
ChangeLog | 6 ++++++
DESCRIPTION | 4 ++--
inst/doc/gRain-intro.pdf |binary
3 files changed, 8 insertions(+), 2 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Bundle: empiricalBayes
Contains: HighProbability localFDR
Version: 2.0
Date: 2008-03-05
Author: David R. Bickel , Zahra Montazeri
Maintainer: David. R. Bickel
BundleDescription: EmpiricalBayes provides a simple solution to the extreme multiple testing problem by estimating local false
discovery rates. It contains two packages, localFDR and HighProbability. Given a vector of p- values, localFDR estimates local false discovery rates and HighProbability determines which p-values are low enough that their alternative hypotheses can be considered highly probable .
License: Mozilla Public License 1.1
Packaged: Wed May 7 16:51:03 2008; hornik
posted at: 13:18 | path: /cran/new | permanent link to this entry
Title: Tools for parsing and generating XML within R and S-Plus.
Description: Parsing facilities for arbitrary XML files, DTDs and HTML, offering both
event and tree based parsers which are customizable with R functions.
XML-1.93-2/XML/inst/Docs/MathML.pdf |only
XML-1.93-2/XML/inst/Docs/Outline.pdf |only
XML-1.93-2/XML/inst/Docs/Tour.pdf |only
XML-1.93-2/XML/inst/Docs/WritingXML.html |only
XML-1.93-2/XML/inst/Docs/description.pdf |only
XML-1.93-2/XML/inst/Docs/manual.pdf |only
XML-1.93-2/XML/inst/examples/obis.R |only
XML-1.95-1/XML/Changes | 101
XML-1.95-1/XML/DESCRIPTION | 4
XML-1.95-1/XML/INSTALL | 2
XML-1.95-1/XML/NAMESPACE | 39
XML-1.95-1/XML/R/XMLClasses.R | 232 +
XML-1.95-1/XML/R/accessors.R | 123
XML-1.95-1/XML/R/catalog.R | 74
XML-1.95-1/XML/R/createNode.R | 11
XML-1.95-1/XML/R/error.R |only
XML-1.95-1/XML/R/hashTree.R | 15
XML-1.95-1/XML/R/htmlParse.R | 11
XML-1.95-1/XML/R/parseDTD.R | 10
XML-1.95-1/XML/R/tree.R | 2
XML-1.95-1/XML/R/xmlErrorEnums.R |only
XML-1.95-1/XML/R/xmlEventParse.R | 24
XML-1.95-1/XML/R/xmlInternalSource.R | 104
XML-1.95-1/XML/R/xmlNodes.R | 337 +
XML-1.95-1/XML/R/xmlTree.R | 44
XML-1.95-1/XML/R/xmlTreeParse.R | 94
XML-1.95-1/XML/R/zzz.R | 2
XML-1.95-1/XML/configure | 4956 ++++++++++----------------
XML-1.95-1/XML/configure.in | 12
XML-1.95-1/XML/inst/exampleData/Rsource.xml | 7
XML-1.95-1/XML/inst/exampleData/entity.xml- |only
XML-1.95-1/XML/inst/exampleData/iTunes.plist |only
XML-1.95-1/XML/inst/exampleData/largeText.xml |only
XML-1.95-1/XML/inst/exampleData/same.xml |only
XML-1.95-1/XML/inst/exampleData/utf.xml |only
XML-1.95-1/XML/inst/examples/CIS.R |only
XML-1.95-1/XML/inst/examples/DiGIR.R |only
XML-1.95-1/XML/inst/examples/catalog.R |only
XML-1.95-1/XML/inst/examples/event.R | 6
XML-1.95-1/XML/inst/examples/itunesSax.R |only
XML-1.95-1/XML/inst/examples/mi1.R |only
XML-1.95-1/XML/man/XMLInternalDocument.Rd | 2
XML-1.95-1/XML/man/addChildren.Rd | 49
XML-1.95-1/XML/man/addSibling.Rd |only
XML-1.95-1/XML/man/catalogResolve.Rd | 24
XML-1.95-1/XML/man/catalogs.Rd |only
XML-1.95-1/XML/man/docName.Rd |only
XML-1.95-1/XML/man/dtdIsAttribute.Rd | 4
XML-1.95-1/XML/man/free.Rd | 4
XML-1.95-1/XML/man/getNodeSet.Rd | 59
XML-1.95-1/XML/man/getXMLErrors.Rd |only
XML-1.95-1/XML/man/newXMLDoc.Rd | 63
XML-1.95-1/XML/man/parseDTD.Rd | 5
XML-1.95-1/XML/man/processXInclude.Rd |only
XML-1.95-1/XML/man/saveXML.Rd | 10
XML-1.95-1/XML/man/xmlAttributeType.Rd | 2
XML-1.95-1/XML/man/xmlAttrs.Rd | 5
XML-1.95-1/XML/man/xmlChildren.Rd | 8
XML-1.95-1/XML/man/xmlEventParse.Rd | 58
XML-1.95-1/XML/man/xmlFlatListTree.Rd | 2
XML-1.95-1/XML/man/xmlGetAttr.Rd | 15
XML-1.95-1/XML/man/xmlNamespace.Rd | 10
XML-1.95-1/XML/man/xmlNamespaceDefinitions.Rd | 16
XML-1.95-1/XML/man/xmlNode.Rd | 7
XML-1.95-1/XML/man/xmlSource.Rd | 53
XML-1.95-1/XML/man/xmlStopParser.Rd |only
XML-1.95-1/XML/man/xmlStructuredStop.Rd |only
XML-1.95-1/XML/man/xmlTreeParse.Rd | 165
XML-1.95-1/XML/src/DocParse.c | 373 +
XML-1.95-1/XML/src/DocParse.h | 2
XML-1.95-1/XML/src/EventParse.c | 98
XML-1.95-1/XML/src/EventParse.h | 7
XML-1.95-1/XML/src/HTMLParse.c | 3
XML-1.95-1/XML/src/RSDTD.c | 17
XML-1.95-1/XML/src/RSDTD.h | 2
XML-1.95-1/XML/src/RS_XML.h | 1
XML-1.95-1/XML/src/RUtils.c | 139
XML-1.95-1/XML/src/Utils.c | 168
XML-1.95-1/XML/src/Utils.h | 63
XML-1.95-1/XML/src/XMLEventParse.c | 161
XML-1.95-1/XML/src/XMLTree.c | 244 +
XML-1.95-1/XML/src/catalog.c | 97
XML-1.95-1/XML/src/xpath.c | 37
83 files changed, 4612 insertions(+), 3571 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: genome-wide SNP association analysis
Description: a package for genome-wide association analysis between
quantitative or binary traits and single-nucleiotide
polymorphisms (SNPs).
CHANGES.LOG | 8
DESCRIPTION | 10
NAMESPACE | 4
R/GASurv.R |only
R/convert.snp.affymetrix.R |only
R/merge.snp.data.R | 20
R/mlreg.R |only
TODO | 25
inst/doc/GenABEL-tutorial.pdf | 3453 +++++++++++++++++++-------------------
man/GASurv.Rd |only
man/GenABEL-package.Rd | 22
man/HWE.show.Rd | 3
man/Xfix.Rd | 2
man/add.plot.Rd | 1
man/as.character.gwaa.data.Rd | 10
man/as.character.snp.coding.Rd | 10
man/as.character.snp.data.Rd | 10
man/as.character.snp.strand.Rd | 10
man/as.data.frame.gwaa.data.Rd | 6
man/as.double.gwaa.data.Rd | 10
man/as.double.snp.data.Rd | 10
man/as.genotype.Rd | 10
man/as.genotype.gwaa.data.Rd | 10
man/as.genotype.snp.data.Rd | 10
man/as.hsgeno.Rd | 10
man/as.hsgeno.gwaa.data.Rd | 10
man/as.hsgeno.snp.data.Rd | 10
man/catable.Rd | 10
man/convert.snp.affymetrix.Rd |only
man/crnames.Rd | 12
man/descriptives.marker.Rd | 14
man/descriptives.scan.Rd | 14
man/descriptives.trait.Rd | 14
man/emp.ccfast.Rd | 5
man/emp.qtscore.Rd | 7
man/formetascore.Rd | 1
man/gwaa.data-class.Rd | 4
man/hom.Rd | 6
man/merge.snp.data.Rd | 2
man/mlreg.Rd |only
man/qtscore.Rd | 3
man/qvaluebh95.Rd | 8
man/scan.glm.2D.Rd | 4
man/scan.glm.Rd | 4
man/show.ncbi.Rd | 18
man/snp.names.Rd | 2
man/srdta.Rd | 18
man/sset.Rd | 12
src/Chip.cpp |only
src/Chip.h |only
src/chinv2.cpp |only
src/cholesky2.cpp |only
src/chsolve2.cpp |only
src/convert.snp.affymetrix.cpp |only
src/convert_snp_merlin.cpp | 2
src/convert_snp_merlin_wslash.cpp | 6
src/coxfit2.cpp |only
src/dmatrix.cpp |only
src/gtps_container.cpp | 37
src/gtps_container.h | 16
src/gwaa.c | 1
src/lm_gwaa.cpp |only
src/mematri1.h |only
src/mematriR.h |only
src/mematrix.h |only
src/merge.snp.data.cpp | 96 -
src/reg1.h |only
src/reg1data.h |only
src/survS.h |only
src/survproto.h |only
70 files changed, 2013 insertions(+), 1977 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Interface to Lp_solve v. 5.5 to solve linear/integer programs
Description: Lp_solve is freely available (under LGPL 2) software for
solving linear, integer and mixed integer programs. In this implementation
we supply a "wrapper" function in C and some R functions that solve
general linear/integer problems, assignment problems, and transportation
problems. This version calls lp_solve version 5.5.
DESCRIPTION | 6 +++---
src/lpslink56.c | 1 -
2 files changed, 3 insertions(+), 4 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Nearest-neighbor classification with categorical variables
Description: This program scales categorical variables in such a way as to
make NN classification as accurate as possible. It also handles continuous
variables and prior probabilities, and does intelligent variable selection
and estimation of error rates and the right number of NN's.
DESCRIPTION | 24 ++++++++++++------------
src/matrix.c | 2 +-
src/utilsR.c | 1 -
3 files changed, 13 insertions(+), 14 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: k-nn classification with variable selection inside leaves of a tree
Description: Construct or predict with k-nearest-neighbor classifiers,
using cross-validation to select k, choose variables (by forward
or backwards selection), and choose scaling (from among no scaling,
scaling each column by its SD, or scaling each column by its MAD).
The finished classifier will consist of a classification tree with
one such k-nn classifier in each leaf.
DESCRIPTION | 27 ++++++++++++++-------------
src/knnTree.c | 1 -
src/matrix.c | 2 +-
src/utils.c | 1 -
4 files changed, 15 insertions(+), 16 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entry
Title: Seismic analysis tools in R
Description: The functions in this package are mostly designed to
reproduce the most commonly used functions in the LLNL software
Seismic Analysis Code (SAC, http://www.llnl.gov/sac/). This includes
reading standard binary SAC (and also SEGY) files, plotting
arrays of seismic recordings (the "SAC" plotting style), filtering
(highpass, lowpass, and bandpass IIR filters), integration, and
differentiation.
DESCRIPTION | 13 +++++++------
R/GET.seis.R | 2 +-
R/NumCalculus.R | 4 ++--
R/firstlib.r | 4 ++--
R/gcp.R | 4 ++--
R/getunits.R | 2 +-
R/iir.R | 16 ++++++++--------
R/mul.R | 6 +++---
R/plot.rsac.R | 22 +++++++++++++++-------
R/rotate.R | 2 +-
R/rsac.R | 2 +-
R/rtrend.R | 7 ++-----
R/section.R |only
R/spect.R | 2 +-
R/sync.R | 2 +-
R/taper.R | 4 ++--
data/sumatra.rda |binary
man/section.Rd |only
man/spect.Rd | 2 +-
man/sumatra.Rd | 4 ++--
src/LLNfilt.c | 3 ++-
src/get_seis.c | 2 +-
22 files changed, 55 insertions(+), 48 deletions(-)
posted at: 05:18 | path: /cran/updated | permanent link to this entryTue, 06 May 2008
Package: mrdrc
Title: Model-robust concentration-response analysis
LazyLoad: yes
LazyData: yes
Version: 1.0-0
Author: Christian Ritz
Maintainer: Christian Ritz
Description: Model-robust, semi-parametric modelling of continuous and quantal concentration/dose-response data.
License: GNU GPL (>= 2)
Depends: R (>= 2.6.0), drc, locfit, EffectiveDose
Date: 2008-05-05
URL: http://www.r-project.org
Packaged: Tue May 6 07:46:20 2008; ritz
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: nparcomp
Type: Package
Title: nparcomp-package
Version: 1.0-0
Date: 2008-05-04
Author: Frank Konietschke
Maintainer: Frank Konietschke
Depends: multcomp, mvtnorm
Description: With this package, it is possible to compute nonparametric simultaneous
confidence intervals for relative contrast effects in the unbalanced one way layout.
Moreover, it computes simultaneous p-values. The simultaneous confidence intervals can
be computed using multivariate normal distribution, multivariate t-distribution with a Satterthwaite
Approximation of the degree of freedom or using multivariate range preserving transformations with
Logit or Probit as transformation function. 2 sample comparisons can be performed with the same
methods described above. There is no assumption on the underlying distribution function, only that
the data have to be at least ordinal numbers.
License: GPL
Packaged: Tue May 6 11:45:42 2008; manager
posted at: 17:18 | path: /cran/new | permanent link to this entry