Fri, 29 Aug 2014

Package RcmdrPlugin.IPSUR updated to version 0.2-0 with previous version 0.1-8 dated 2012-03-23

Title: An IPSUR Plugin for the R Commander
Description: This package is an R Commander plugin that accompanies IPSUR, an Introduction to Probability and Statistics Using R.
Author: G. Jay Kerns [aut, cre], Theophilus Boye [ctb], Tyler Drombosky [ctb]
Maintainer: G. Jay Kerns

Diff between RcmdrPlugin.IPSUR versions 0.1-8 dated 2012-03-23 and 0.2-0 dated 2014-08-29

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Package mgcv updated to version 1.8-3 with previous version 1.8-2 dated 2014-07-21

Title: Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness estimation
Description: Routines for GAMs and other generalized ridge regression with multiple smoothing parameter selection by GCV, REML or UBRE/AIC. Also GAMMs. Includes a gam() function.
Author: Simon Wood
Maintainer: Simon Wood

Diff between mgcv versions 1.8-2 dated 2014-07-21 and 1.8-3 dated 2014-08-29

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New package lakemorpho with initial version 1.0
Package: lakemorpho
Type: Package
Title: Lake morphometry in R
Version: 1.0
Date: 2013-11-19
Authors@R: person(given = "Jeffrey W.", family = "Hollister", role = c("aut","cre"), email = "hollister.jeff@epa.gov")
URL: http://www.github.com/USEPA/lakemorpho
BugReports: https://www.github.com/USEPA/lakemorpho/issues
Maintainer: Jeffrey W. Hollister
License: CC0
Description: Lake morphometry metrics are used by limnologists to understand, among other things, the ecological processes in a lake. This package provides the tools to calculate a typical suite of these metrics from an input elevation model and lake polygon.
Depends: R (>= 2.10), maptools
Imports: rgdal, raster, rgeos, sp, geosphere
Author: Jeffrey W. Hollister [aut, cre]
Packaged: 2014-08-29 17:59:42 UTC; jhollist
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 20:29:33

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Package extraTrees updated to version 1.0.2 with previous version 1.0.1 dated 2014-08-10

Title: ExtraTrees method
Description: A package implementing ExtraTrees method for classification and regression. Uses Java implementation of the method.
Author: Jaak Simm, Ildefons Magrans de Abril
Maintainer: Jaak Simm

Diff between extraTrees versions 1.0.1 dated 2014-08-10 and 1.0.2 dated 2014-08-29

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Package BH updated to version 1.54.0-4 with previous version 1.54.0-3 dated 2014-08-04

Title: Boost C++ header files
Description: Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN package. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel

Diff between BH versions 1.54.0-3 dated 2014-08-04 and 1.54.0-4 dated 2014-08-29

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New package compendiumdb with initial version 0.1.0
Package: compendiumdb
Type: Package
Title: Tools for Storage and Retrieval of Gene Expession Data
Version: 0.1.0
Date: 2014-08-29
Author: Umesh Nandal , Perry D. Moerland
Maintainer: Umesh Nandal
Description: Package for the systematic collection, storage and retrieval of gene expression data via a MySQL database.
Depends: Biobase, RMySQL
Suggests: inSilicoDb, limma, hgu133a.db, GSVA, GSVAdata
SystemRequirements: Perl (>=5), MySQL (>=5.6)
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-08-29 17:20:10 UTC; ripley
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 19:20:50

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Package turboEM updated to version 2014.8-1 with previous version 2012.2-1 dated 2012-02-17

Title: A Suite of Convergence Acceleration Schemes for EM, MM and other fixed-point algorithms
Description: Algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM and MM algorithms. It can be used to accelerate any smooth, linearly convergent acceleration scheme. A tutorial style introduction to this package is available in a vignette on the CRAN download page or, when the package is loaded in an R session, with vignette("turboEM").
Author: Jennifer F. Bobb [aut], Ravi Varadhan [aut, cre], Hui Zhao [ctb]
Maintainer: Ravi Varadhan

Diff between turboEM versions 2012.2-1 dated 2012-02-17 and 2014.8-1 dated 2014-08-29

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Package birk updated to version 1.1 with previous version 1.0 dated 2014-06-25

Title: MA Birk functions
Description: This is a compilation of functions that I found useful to make. It currently includes a unit of measurement conversion function and a standard error function that behaves complementary to sd().
Author: Matthew A Birk
Maintainer: Matthew A Birk

Diff between birk versions 1.0 dated 2014-06-25 and 1.1 dated 2014-08-29

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Package mme updated to version 0.1-5 with previous version 0.1-4 dated 2014-01-05

Title: Multinomial Mixed Effects Models
Description: mme fit Gaussian Multinomial mixed-effects models for small area estimation: Model 1, with one random effect in each category of the response variable; Model 2, introducing independent time effect; Model 3, introducing correlated time effect. mme calculates analytical and parametric bootstrap MSE estimators.
Author: E. Lopez-Vizcaino, M.J. Lombardia and D. Morales
Maintainer: E. Lopez-Vizcaino

Diff between mme versions 0.1-4 dated 2014-01-05 and 0.1-5 dated 2014-08-29

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Package FreeSortR updated to version 1.1 with previous version 1.0 dated 2014-07-22

Title: Free Sorting data analysis.
Description: The package FreeSortR provides tools for describing and analysing free sorting data. Main methods are computation of consensus partition and factorial analysis of the dissimilarity matrix between stimuli (using multidimensional scaling approach).
Author: Philippe Courcoux
Maintainer: Philippe Courcoux

Diff between FreeSortR versions 1.0 dated 2014-07-22 and 1.1 dated 2014-08-29

 DESCRIPTION |   10 +++++-----
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Package decompr updated to version 1.2 with previous version 1.1 dated 2014-08-27

Title: Export Decomposition (Wang-Wei-Zhu and source)
Description: The R package "decompr" implements two export decomposition algorithms. Firstly, the Wang-Wei-Zhu (Wang, Wei, and Zhu 2013) algorithm splits bilateral gross exports into 16 value added components. Secondly, the Source decomposition algorithm derives the value added origin of exports by country and industry, which is also based on Wang, Wei, and Zhu (2013).
Author: Bastiaan Quast
Maintainer: Bastiaan Quast

Diff between decompr versions 1.1 dated 2014-08-27 and 1.2 dated 2014-08-29

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Package riverplot updated to version 0.3 with previous version 0.2 dated 2014-02-27

Title: Sankey or ribbon plots
Description: Sankey plots are a type of diagram that is convenient to illustrate how flow of information, resources etc. separates and joins, much like observing how rivers split and merge. For example, they can be used to compare different clusterings.
Author: January Weiner
Maintainer: January Weiner

Diff between riverplot versions 0.2 dated 2014-02-27 and 0.3 dated 2014-08-29

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New package iosmooth with initial version 0.91
Package: iosmooth
Type: Package
Title: Functions for smoothing with infinite order flat-top kernels
Version: 0.91
Date: 2014-08-19
Author: Timothy L. McMurry, Dimitris N. Politis
Maintainer: Timothy L. McMurry
Description: Density, spectral density, and regression estimation using infinite order kernels.
License: GPL
Packaged: 2014-08-23 18:53:39 UTC; tmcmurry
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 15:06:26

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Package rrdflibs (with last version 1.3.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-12-23 1.3.0
2011-12-02 1.2.2
2011-10-19 1.2
2011-04-26 1.1.2
2011-03-31 1.1.0

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Package speedRlibs (with last version 1.1-36) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-04-13 1.1-36

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Package rrdf (with last version 2.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-01-02 2.0.2
2014-01-01 2.0.1
2013-12-23 2.0.0
2012-11-30 1.9.2
2012-11-28 1.9.1
2011-12-02 1.8
2011-11-24 1.7
2011-10-19 1.6
2011-09-25 1.5
2011-08-11 1.4
2011-06-28 1.3
2011-06-15 1.2
2011-04-26 1.1.1
2011-03-31 1.1.0

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Package BayesFactor updated to version 0.9.8 with previous version 0.9.7 dated 2014-02-22

Title: Computation of Bayes factors for common designs
Description: The BayesFactor package is a suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.
Author: Richard D. Morey, Jeffrey N. Rouder, Tahira Jamil
Maintainer: Richard D. Morey

Diff between BayesFactor versions 0.9.7 dated 2014-02-22 and 0.9.8 dated 2014-08-29

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Package Ohmage (with last version 2.11-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-02-23 2.11-3
2012-07-05 2.11-2
2012-05-30 2.11-1
2012-02-12 2.9-7
2012-01-29 2.9-6
2012-01-27 2.9-5
2012-01-14 2.9-4
2012-01-04 2.9-2
2012-01-03 2.9-1
2011-12-27 2.9

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Package RNCBI (with last version 0.9.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-09-19 0.9.1
2010-06-25 0.9

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Package bartMachine (with last version 1.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-02-05 1.0.2
2013-12-08 1.0.1
2013-12-06 1.0

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Package rChoiceDialogs (with last version 1.0.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-10-12 1.0.4
2012-08-10 1.0.3
2011-01-15 1.0.1

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Package Rjms (with last version 0.0.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-07-07 0.0.5
2012-12-30 0.0.4
2012-05-23 0.0.3
2011-11-03 0.0.2
2011-07-07 0.0.1

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Package RNCBIAxis2Libs (with last version 0.9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-06-25 0.9

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Package bilan (with last version 2013.12) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-12-16 2013.12

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Package dataonelibs (with last version 1.0.0) was removed from CRAN

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2013-02-25 1.0.0

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Package Rjmsjars (with last version 0.0.1) was removed from CRAN

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2011-07-07 0.0.1

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Package dataone (with last version 1.0.0) was removed from CRAN

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2013-02-25 1.0.0

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Package vows updated to version 0.3 with previous version 0.2-1 dated 2013-03-22

Title: Voxelwise semiparametrics
Description: Parametric and semiparametric inference for massively parallel models, i.e., a large number of models with common design matrix, as often occurs with brain imaging data.
Author: Philip Reiss, Yin-Hsiu Chen, Lei Huang, Lan Huo, and Ruixin Tan
Maintainer: Philip Reiss

Diff between vows versions 0.2-1 dated 2013-03-22 and 0.3 dated 2014-08-29

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Package raincpc updated to version 0.4 with previous version 0.3 dated 2014-08-26

Title: Obtain and Analyze Rainfall Data from the Climate Prediction Center
Description: The Climate Prediction Center's (CPC) rainfall data for the world (1979 to present, 50 km resolution) and the USA (1948 to present, 25 km resolution), is one of the few high quality, long term, observation based, daily rainfall products available for free. Although raw data is available at CPC's ftp site, obtaining, processing and visualizing the data is not straightforward. There are more than 12,000 files for the world and about 24,000 files for the USA. Moreover, file formats and file extensions have not been consistent. This package provides functionality to download, process and visualize over 35 years of global rainfall data and over 65 years of USA rainfall data from CPC.
Author: Gopi Goteti
Maintainer: Gopi Goteti

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Package icamix updated to version 1.0.1 with previous version 1.0 dated 2014-07-02

Title: Estimation of ICA Mixture Models
Description: The icamix package provides R functions as well as a C++ library which facilitate the estimation of ICA mixture models. We have developed and implemented the NSMM-ICA algorithm in the function EMFASTICAALG that currently integrates npEM and Fast-ICA for non-parametric estimation of ICA mixture models.
Author: Xiaotian Zhu, David R. Hunter
Maintainer: Xiaotian Zhu

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Package heatmap3 updated to version 1.0.7 with previous version 1.0.4 dated 2014-06-10

Title: A improved heatmap package
Description: heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerful and convenient features.
Author: Shilin Zhao, Yan Guo, Quanhu Sheng, Yu Shyr
Maintainer: Shilin Zhao

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Package analogue updated to version 0.14-0 with previous version 0.12-0 dated 2013-12-14

Title: Analogue and weighted averaging methods for palaeoecology
Description: Fits Modern Analogue Technique and Weighted Averaging transfer function models for prediction of environmental data from species data, and related methods used in palaeoecology.
Author: Gavin L. Simpson [aut, cre], Jari Oksanen [aut]
Maintainer: Gavin L. Simpson

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Thu, 28 Aug 2014

Package ttScreening updated to version 1.4 with previous version 1.3 dated 2014-02-28

Title: Genome-wide DNA methylation sites screening by use of training and testing samples.
Description: This package utilizes training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.
Author: Meredith Ray, Xin Tong, Hongmei Zhang
Maintainer: Meredith Ray

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Package psychotree updated to version 0.14-0 with previous version 0.13-0 dated 2014-02-03

Title: Recursive Partitioning Based on Psychometric Models
Description: Recursive partitioning based on psychometric models, employing the general MOB algorithm (from package partykit) to obtain Bradley-Terry trees, Rasch trees, rating scale and partial credit trees.
Author: Achim Zeileis [aut, cre], Carolin Strobl [aut], Florian Wickelmaier [aut], Basil Abou El-Komboz [aut], Julia Kopf [aut]
Maintainer: Achim Zeileis

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Package psychotools updated to version 0.3-0 with previous version 0.2-0 dated 2014-02-03

Title: Infrastructure for Psychometric Modeling
Description: Infrastructure for psychometric modeling such as data classes (for item response data and paired comparisons), basic model fitting functions (for Bradley-Terry, Rasch, partial credit, and rating scale models), extractor functions for different types of parameters (item, person, threshold, discrimination), unified inference and visualizations, and various datasets for illustration. Intended as a common lightweight and efficient toolbox for psychometric modeling and a common building block for fitting psychometric mixture models in package "psychomix" and psychometric tree models in package "psychotree".
Author: Achim Zeileis [aut, cre], Carolin Strobl [aut], Florian Wickelmaier [aut], Basil Abou El-Komboz [aut], Julia Kopf [aut]
Maintainer: Achim Zeileis

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Package MGSDA updated to version 1.1 with previous version 1.0 dated 2014-07-08

Title: Multi-Group Sparse Discriminant Analysis
Description: Implements Multi-Group Sparse Discriminant Analysis proposal of 'I.Gaynanova, J.Booth and M.Wells (2014), Simultaneous sparse estimation of canonical vectors in the p>>N setting'
Author: Irina Gaynanova
Maintainer: Irina Gaynanova

Diff between MGSDA versions 1.0 dated 2014-07-08 and 1.1 dated 2014-08-28

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 MGSDA-1.1/MGSDA/R/classifyV.R        |   51 ++++++++++++++++-------------------
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Package corrgram updated to version 1.6 with previous version 1.5 dated 2013-08-29

Title: Plot a correlogram
Description: Calculates correlation of variables and displays the results graphically.
Author: Kevin Wright
Maintainer: Kevin Wright

Diff between corrgram versions 1.5 dated 2013-08-29 and 1.6 dated 2014-08-28

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New package Eplot with initial version 1.0
Package: Eplot
Type: Package
Title: Plotting longitudinal series
Version: 1.0
Date: 2014-08-20
Author: Eran Raviv
Maintainer: Eran Raviv
Description: Aim: Adjust the graphical parameters to create nicer longitudinal series plots. The default set of graphical parameters is very general, and can be improved upon when we are interested in plotting data points observed over time. Functions facilitate plotting those kind of series, univariate plots, bivariate plots (with vertical axis on both left and right hand sides), multivariate plots and plots which allow to examine whether a new observation is 'unusual' via construction and visualization of prediction intervals around it.
License: GPL-2
Packaged: 2014-08-28 17:06:09 UTC; MP-User
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 01:16:24

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New package BIOM.utils with initial version 0.9
Package: BIOM.utils
Type: Package
Title: Utilities for the BIOM (Biological Observation Matrix) Format
Authors@R: person (c("Daniel", "T."), "Braithwaite", role=c("aut", "cre"), email="contact.dtb@gmail.com")
Version: 0.9
Depends: R (>= 3.0), utils
Imports:
Suggests: RJSONIO, MGRASTer
URL: https://github.com/braithwaite/BIOM.utils/
Date: 2014-08-22
Description: Provides utilities to facilitate import, export and computation with the BIOM (Biological Observation Matrix) format (http://biom-format.org).
License: BSD_2_clause + file LICENSE
Copyright: University of Chicago
LazyData: yes
Collate: source.R
Packaged: 2014-08-28 20:46:11 UTC; dan
Author: Daniel T. Braithwaite [aut, cre]
Maintainer: Daniel T. Braithwaite
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 01:18:59

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Package SQUAREM updated to version 2014.8-1 with previous version 2012.7-1 dated 2012-07-26

Title: Squared extrapolation methods for accelerating fixed-point iterations
Description: Algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM algorithm. It can be used to accelerate any smooth, linearly convergent acceleration scheme. A tutorial style introduction to this package is available in a vignette on the CRAN download page or, when the package is loaded in an R session, with vignette("SQUAREM").
Author: Ravi Varadhan
Maintainer: Ravi Varadhan

Diff between SQUAREM versions 2012.7-1 dated 2012-07-26 and 2014.8-1 dated 2014-08-28

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Package Rcapture updated to version 1.4-2 with previous version 1.3-1 dated 2012-05-31

Title: Loglinear Models for Capture-Recapture Experiments
Description: Estimation of abundance and other of demographic parameters for closed populations, open populations and the robust design in capture-recapture experiments using loglinear models.
Author: Louis-Paul Rivest and Sophie Baillargeon
Maintainer: Louis-Paul Rivest

Diff between Rcapture versions 1.3-1 dated 2012-05-31 and 1.4-2 dated 2014-08-28

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New package RcmdrPlugin.FactoMineR with initial version 1.5-0
Package: RcmdrPlugin.FactoMineR
Type: Package
Version: 1.5-0
Date: 2014-08-12
Title: Graphical User Interface for FactoMineR
Author: Francois Husson, Julie Josse, Sebastien Le
Maintainer: Francois Husson
Imports: Rcmdr (>= 2.0-0), tcltk
Depends: FactoMineR
Description: Rcmdr Plugin for the FactoMineR package
License: GPL (>= 2)
URL: http://factominer.free.fr, http://www.agrocampus-ouest.fr/math/
LazyLoad: no
Encoding: latin1
Packaged: 2014-08-28 19:10:16 UTC; husson
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 01:11:08

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Package RcmdrPlugin.DoE updated to version 0.12-3 with previous version 0.12-2 dated 2013-08-29

Title: R Commander Plugin for (industrial) Design of Experiments
Description: The package provides a platform-independent GUI for design of experiments. It is implemented as a plugin to the R-Commander, which is a more general graphical user interface for statistics in R based on tcl/tk. DoE functionality can be accessed through the menu Design that is added to the R-Commander menus.
Author: Ulrike Groemping [aut, cre], Fox John [ctb]
Maintainer: Ulrike Groemping

Diff between RcmdrPlugin.DoE versions 0.12-2 dated 2013-08-29 and 0.12-3 dated 2014-08-28

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 NAMESPACE                                   |    6 ++++--
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 8 files changed, 34 insertions(+), 17 deletions(-)

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Package HiClimR updated to version 1.1.3 with previous version 1.1.2 dated 2014-07-27

Title: Hierarchical Climate Regionalization: An Improved Hierarchical Clustering in R for Climate Regionalization
Description: HiClimR package modifies and improves hierarchical clustering in R ('hclust' function in 'stats' library), for climate regionalization. It adds a new clustering method (called, regional linkage) to the set of available methods together with several features including regridding, coarsening spatial resolution, geographic masking, data thresholds, detrending and standardization preprocessing, faster correlation function, hybrid hierarchical clustering, and cluster validation. Badr et. al (2014) describes the regionalization algorithms and data processing tools included in the package and presents a demonstration application in which the package is used to regionalize Africa on the basis of interannual precipitation variability. It is applicable to any correlation-based clustering.
Author: Hamada S. Badr [aut, cre], Benjamin F. Zaitchik [aut], Amin K. Dezfuli [aut]
Maintainer: Hamada S. Badr

Diff between HiClimR versions 1.1.2 dated 2014-07-27 and 1.1.3 dated 2014-08-28

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 15 files changed, 136 insertions(+), 106 deletions(-)

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Package compareGroups updated to version 2.0.5 with previous version 2.0.4 dated 2014-05-02

Title: Descriptive analysis by groups
Description: This package is designed to read, interpret, summarise, display and analyse epidemiological data. Can be used to create data summaries for quality control, extensive reports for exploring data, including publication-ready univariate or bivariate tables in plain text HTML and LaTeX, and a figures to quickly visualise the distribution of your data. Depending on the nature of the variable, various statistics are calculated (mean, median, frequencies, incidences) and appropriate tests are performed (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...). The latest version includes functionality for summarising genetic data, and for performing low-level quality control of your database (see radiograph()) to help identify data-entry errors. This version has also been implemented in a web-interface to make this package accessible to non-R-users (see www.comparegroups.eu).
Author: Isaac Subirana, Joan Vila, Héctor Sanz, Gavin Lucas, Judith Peñafiel and David Giménez
Maintainer: Isaac Subirana

Diff between compareGroups versions 2.0.4 dated 2014-05-02 and 2.0.5 dated 2014-08-28

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New package bvarsv with initial version 1.0
Package: bvarsv
Type: Package
Title: Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters
Version: 1.0
Date: 2014-08-22
Author: Fabian Krueger
Maintainer: Fabian Krueger
Description: R/C++ implementation of the model proposed by Primiceri ("Time Varying Structural Vector Autoregressions and Monetary Policy", Review of Economic Studies, 2005), with a focus on generating posterior predictive distributions.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.0)
LinkingTo: Rcpp, RcppArmadillo
URL: https://sites.google.com/site/fk83research/code
Packaged: 2014-08-28 11:37:09 UTC; kruegefn
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-28 19:56:22

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Package Rlabkey updated to version 2.1.125 with previous version 2.1.123 dated 2013-11-04

Title: Data exchange between R and LabKey Server
Description: This package allows an R user to discover, query and modify data in LabKey Server
Author: Peter Hussey
Maintainer: Cory Nathe

Diff between Rlabkey versions 2.1.123 dated 2013-11-04 and 2.1.125 dated 2014-08-28

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New package NPBayesImpute with initial version 0.1
Package: NPBayesImpute
Type: Package
Title: Non-parametric Bayesian Multiple Imputation for Categorical Data
Version: 0.1
Date: 2014-04-05
Author: Quanli Wang, Daniel Manrique-Vallier, Jerome P. Reiter and Jingchen Hu
Maintainer: Quanli Wang
Description: These routines create multiple imputations of missing at random categorical data, with or without structural zeros. Imputations are based on Dirichlet process mixtures of multinomial distributions, which is a non-parametric Bayesian modeling approach that allows for flexible joint modeling.
License: GPL (>= 3)
Depends: methods, Rcpp (>= 0.10.2)
LinkingTo: Rcpp
RcppModules: clcm
Packaged: 2014-08-28 12:51:41 UTC; quanli
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-28 15:12:18

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Package effsize updated to version 0.5.2 with previous version 0.5.1 dated 2014-05-21

Title: Efficient effect size computation
Description: This package contains the functions to compute the standardized effect sizes for experiments (Cohen d, Hedges g, Cliff delta, Vargha and Delaney A). The computation algorithms have been optimized to allow efficient computation even with very large data sets.
Author: Marco Torchiano
Maintainer: Marco Torchiano

Diff between effsize versions 0.5.1 dated 2014-05-21 and 0.5.2 dated 2014-08-28

 DESCRIPTION            |    8 ++++----
 MD5                    |    6 +++---
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Package BioStatR updated to version 2.0.0 with previous version 1.0.4 dated 2012-03-30

Title: Initiation à la Statistique avec R
Description: This packages provides datasets and functions for the book "Initiation à la Statistique avec R", Dunod, 2ed, 2014.
Author: Frederic Bertrand , Myriam Maumy-Bertrand .
Maintainer: Frederic Bertrand

Diff between BioStatR versions 1.0.4 dated 2012-03-30 and 2.0.0 dated 2014-08-28

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New package parsedate with initial version 1.0.2
Package: parsedate
Title: Recognize and parse dates in various formats, including all ISO 8601 formats
Version: 1.0.2
Maintainer: Gabor Csardi
Author: Gabor Csardi, Linus Torvalds
Description: Parse dates automatically, without the need of specifying a format. Currently it includes the git date parser. It can also recognize and parse all ISO 8601 formats.
License: GPL-2
LazyData: true
Depends: methods
Imports: lubridate
Suggests: testthat
URL: https://github.com/gaborcsardi/parsedate
BugReports: https://github.com/gaborcsardi/parsedate/issues
Packaged: 2014-08-28 10:58:49 UTC; gaborcsardi
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-28 13:12:40

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Package fscaret updated to version 0.8.5.7 with previous version 0.8.5.6 dated 2014-04-14

Title: Automated caret feature selection
Description: Automated feature selection using variety of models provided by caret package
Author: Jakub Szlek , acknowledgments to Aleksander Mendyk, contributions from stackoverflow and r-help@r-project.org mailing list community. Acknowledgments: This work was funded by Poland-Singapore bilateral cooperation project no 2/3/POL-SIN/2012.
Maintainer: Jakub Szlek

Diff between fscaret versions 0.8.5.6 dated 2014-04-14 and 0.8.5.7 dated 2014-08-28

 DESCRIPTION |   14 +++++++-------
 MD5         |    2 +-
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Package trajectories updated to version 0.1-1 with previous version 0.1-0 dated 2014-08-27

Title: Classes and methods for trajectory data
Description: Classes and methods for trajectory data, with nested classes for individual trips, and collections for different entities. Methods include selection, generalization, aggregation, intersection, and plotting.
Author: Edzer Pebesma [cre, aut], Benedikt Klus [aut]
Maintainer: Edzer Pebesma

Diff between trajectories versions 0.1-0 dated 2014-08-27 and 0.1-1 dated 2014-08-28

 DESCRIPTION            |    8 +-
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 R/Tracks-methods.R     |  146 +++++++++++++++++++++++++------------------------
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Package QuantifQuantile updated to version 1.0 with previous version 0.2 dated 2014-06-13

Title: Estimation of conditional quantiles using optimal quantization
Description: Estimation of conditional quantiles using optimal quantization. Construction of an optimal grid of N quantizers, estimation of conditional quantiles and data driven selection of the size N of the grid. Graphical illustrations for the selection of N and of resulting estimated curves or surfaces when the dimension of the covariate is one or two.
Author: Isabelle Charlier and Davy Paindaveine and Jerome Saracco
Maintainer: Isabelle Charlier

Diff between QuantifQuantile versions 0.2 dated 2014-06-13 and 1.0 dated 2014-08-28

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Package georob updated to version 0.1-5 with previous version 0.1-4 dated 2014-06-02

Title: Robust Geostatistical Analysis of Spatial Data
Description: The georob package provides functions for fitting linear models with spatially correlated errors by robust and Gaussian Restricted Maximum Likelihood and for computing robust and customary point and block kriging predictions, along with utility functions for cross-validation and for unbiased back-transformation of kriging predictions of log-transformed data.
Author: Andreas Papritz [cre, aut], Cornelia Schwierz [ctb]
Maintainer: Andreas Papritz

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Package cheddar updated to version 0.1-626 with previous version 0.1-625 dated 2014-02-26

Title: Analysis and visualisation of ecological communities
Description: Cheddar provides a flexible, extendable representation of an ecological community and a range of functions for analysis and visualisation, focusing on food web, body mass and numerical abundance data. It also allows inter-web comparisons such as examining changes in community structure over environmental, temporal or spatial gradients.
Author: Lawrence Hudson with contributions from Dan Reuman and Rob Emerson
Maintainer: Lawrence Hudson

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Package Bergm updated to version 2.9.1 with previous version 2.9 dated 2014-07-22

Title: Bayesian analysis for exponential random graph models
Description: Set of tools to analyse Bayesian exponential random graph models
Author: Alberto Caimo and Nial Friel
Maintainer: Alberto Caimo

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Package spatstat updated to version 1.38-1 with previous version 1.38-0 dated 2014-08-15

Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, and point patterns on a linear network. Contains about 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported. Parametric models can be fitted to point pattern data using the functions ppm, kppm, slrm similar to glm. Types of models include Poisson, Gibbs, Cox and cluster point processes. Models may involve dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods. Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise, AIC). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley , Rolf Turner and Ege Rubak , with substantial contributions of code by Kasper Klitgaard Berthelsen; Abdollah Jalilian; Marie-Colette van Lieshout; Dominic Schuhmacher; and Rasmus Waagepetersen. Additional contributions by Q.W. Ang; S. Azaele; M. Baddeley; C. Beale; M. Bell; R. Bernhardt; T. Bendtsen; A. Bevan; B. Biggerstaff; L. Bischof; R. Bivand; J.M. Blanco Moreno; F. Bonneu; J. Burgos; S. Byers; Y.M. Chang; J.B. Chen; I. Chernayavsky; Y.C. Chin; B. Christensen; J.-F. Coeurjolly; R. Corria Ainslie; M. de la Cruz; P. Dalgaard; S. Das; P.J. Diggle; P. Donnelly; I. Dryden; S. Eglen; O. Flores; E.D. Ford; P. Forbes; J. Franklin; N. Funwi-Gabga; O. Garcia; A. Gault; M. Genton; J. Gilbey; J. Goldstick; P. Grabarnik; C. Graf; U. Hahn; A. Hardegen; M. Hering; M.B. Hansen; M. Hazelton; J. Heikkinen; K. Hornik; P. Hunziker; R. Ihaka; A. Jammalamadaka; R. John-Chandran; D. Johnson; M. Kuhn; J. Laake; F. Lavancier; T. Lawrence; R.A. Lamb; J. Lee; G.P. Leser; H.T. Li; G. Limitsios; B. Madin; J. Marcus; K. Marchikanti; R. Mark; J. Mateu; P. McCullagh; U. Mehlig; S. Meyer; X.C. Mi; L. De Middeleer; R.K. Milne; J. Moller; E. Mudrak; G.M. Nair; L.S. Nielsen; F. Nunes; J. Oehlschlaegel; T. Onkelinx; S. O'Riordan; E. Parilov; J. Picka; N. Picard; M. Porter; S. Protsiv; A. Raftery; S. Rakshit; P. Ramon; X. Raynaud, M. Reiter; T.O. Richardson; B.D. Ripley; E. Rosenbaum; B. Rowlingson; J. Rudokas; J. Rudge; C. Ryan; F. Safavimanesh; A. Sarkka; K. Schladitz; B.T. Scott; G.C. Shen; V. Shcherbakov; I.-M. Sintorn; Y. Song; M. Spiess; M. Stevenson; K. Stucki; M. Sumner; P. Surovy; B. Taylor; T. Thorarinsdottir; B. Turlach; K. Ummer; M. Uppala; A. van Burgel; T. Verbeke; M. Vihtakari; A. Villers; F. Vinatier; H. Wang; H. Wendrock; J. Wild; S. Wong; M.E. Zamboni and A. Zeileis.
Maintainer: Adrian Baddeley

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Package FactoMineR updated to version 1.27 with previous version 1.26 dated 2014-04-09

Title: Multivariate Exploratory Data Analysis and Data Mining with R
Description: an R package for exploratory data analysis
Author: Francois Husson, Julie Josse, Sebastien Le, Jeremy Mazet
Maintainer: Francois Husson

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Package rAvis updated to version 0.1.2 with previous version 0.1.1 dated 2014-03-07

Title: Interface to the bird-watching datasets at proyectoavis.com
Description: Interface to the proyectoavis.com bird observations records database. It provides means to download datasets filtered by species, order, family, and several other criteria. Provides also basic functionality to plot exploratory maps of the datasets.
Author: Javier González Hernández , Sara Varela
Maintainer: Sara Varela

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Package LatticeKrig updated to version 3.4 with previous version 3.3 dated 2014-07-11

Title: Multiresolution Kriging based on Markov random fields
Description: Functions for the interpolation of large spatial datasets. This package follows a "fixed rank Kriging" approach using a large number of basis functions and provides spatial estimates that are comparable to standard families of covariance functions. Using a large number of basis functions allows for estimates that can come close to interpolating the observations (a spatial model with a small nugget variance.) The covariance model for this method can approximate the Matern covariance family but also allows for a multi-resolution model and supports efficient computation of the profile likelihood for estimating covariance parameters. This is accomplished through compactly supported basis functions and a Markov random field model for the basis coefficients. These features lead to sparse matrices for the computations. One benefit of this approach is the facilty to do unconditional and conditional simulation of the field for large numbers of arbitrary points. There is also the flexibility for estimating nonstationary covariances. Included are generic methods for prediction, standard errors for prediction, plotting of the estimated surface and conditional and unconditional simulation.
Author: Douglas Nychka [aut, cre], Dorit Hammerling [aut], Stephan Sain [aut], Nathan Lenssen [aut]
Maintainer: Douglas Nychka

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Package ifultools updated to version 2.0-1 with previous version 2.0-0 dated 2013-12-30

Title: Insightful Research Tools
Description: Insightful Research Tools.
Author: William Constantine and Donald Percival (Applied Physics Laboratory, University of Washington)
Maintainer: Don Percival

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Package fastR updated to version 0.8-1 with previous version 0.4-2 dated 2013-04-11

Title: Data sets and utilities for Foundations and Applications of Statistics by R Pruim
Description: Data sets and utilities for Foundations and Applications of Statistics:an Introduction using R by R Pruim
Author: Randall Pruim
Maintainer: Randall Pruim

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More information about fastR at CRAN
Permanent link

Package cgAUC updated to version 1.2.1 with previous version 1.1.2 dated 2013-01-16

Title: Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it.
Description: The cgAUC can calculate the AUC-type measure of Obuchowski(2006) when gold standard is continuous, and find the optimal linear combination of variables with respect to this measure.
Author: Yuan-chin I. Chang, Yu-chia Chang, and Ling-wan Chen
Maintainer: Yu-chia Chang

Diff between cgAUC versions 1.1.2 dated 2013-01-16 and 1.2.1 dated 2014-08-28

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 cgAUC-1.2.1/cgAUC/DESCRIPTION             |   18 +++++++++---------
 cgAUC-1.2.1/cgAUC/MD5                     |   21 ++++++++++++---------
 cgAUC-1.2.1/cgAUC/NAMESPACE               |    2 ++
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 cgAUC-1.2.1/cgAUC/man/cgAUC-package.Rd    |   17 +++++++++++------
 cgAUC-1.2.1/cgAUC/man/cgAUC.Rd            |    1 +
 cgAUC-1.2.1/cgAUC/src                     |only
 17 files changed, 35 insertions(+), 24 deletions(-)

More information about cgAUC at CRAN
Permanent link

Wed, 27 Aug 2014

New package trajectories with initial version 0.1-0
Package: trajectories
Version: 0.1-0
Date: 2014-08-27
Title: Classes and methods for trajectory data
Authors@R: c(person("Edzer", "Pebesma", role = c("cre", "aut"), email = "edzer.pebesma@uni-muenster.de"), person("Benedikt", "Klus", role = "aut"))
Depends: R (>= 2.14.0)
Imports: methods, lattice, sp (>= 1.0-14), spacetime (>= 1.0-0), rgdal, rgeos
Suggests: rgl, OpenStreetMap, RCurl, rjson, adehabitatLT
LazyData: no
Description: Classes and methods for trajectory data, with nested classes for individual trips, and collections for different entities. Methods include selection, generalization, aggregation, intersection, and plotting.
License: GPL (>= 2)
URL: http://github.com/edzer/trajectories
Collate: Class-Tracks.R Tracks-methods.R stplot.R
Packaged: 2014-08-27 21:05:41 UTC; edzer
Author: Edzer Pebesma [cre, aut], Benedikt Klus [aut]
Maintainer: Edzer Pebesma
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-28 00:05:09

More information about trajectories at CRAN
Permanent link

Package Runuran updated to version 0.21.0 with previous version 0.20.0 dated 2012-09-10

Title: R interface to the UNU.RAN random variate generators
Description: Interface to the UNU.RAN library for Universal Non-Uniform RANdom variate generators. Thus it allows to build non-uniform random number generators from quite arbitrary distributions. In particular, it provides an algorithm for fast numerical inversion for distribution with given density function. In addition, the package contains densities, distribution functions and quantiles from a couple of distributions.
Author: Josef Leydold and Wolfgang H\"ormann
Maintainer: Josef Leydold

Diff between Runuran versions 0.20.0 dated 2012-09-10 and 0.21.0 dated 2014-08-27

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 Runuran-0.21.0/Runuran/MD5                                                      |  739 +++++-----
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 Runuran-0.21.0/Runuran/NEWS                                                     |   20 
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New package replicationInterval with initial version 0.1
Package: replicationInterval
Type: Package
Title: Replication Interval Functions
Version: 0.1
Date: 2014-08-27
Author: David Stanley
Maintainer: David Stanley
Description: A common problem faced by journal reviewers and authors is the question of whether the results of a replication study are consistent with the original published study. One solution to this problem is to examine the effect size from the published study and generate the range of effect sizes that could reasonably be obtained (due to random sampling) in a replication attempt (i.e., calculate a replication interval). If a replication effect size falls outside the replication interval then that value could not have occurred to due the effects of sampling error alone. Alternatively, if a replication effect size falls within the replication interval then the replication results could have reasonably occurred due to the effects of sampling error alone. This package has functions that calculate the replication interval for two different types of effect sizes (i.e., correlation, Cohen's d).
Imports: MBESS
License: Unlimited
Packaged: 2014-08-27 20:23:22 UTC; stanley
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 23:32:23

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Package gWidgets updated to version 0.0-54 with previous version 0.0-53 dated 2014-07-20

Title: gWidgets API for building toolkit-independent, interactive GUIs
Description: gWidgets provides a toolkit-independent API for building interactive GUIs. At least one of the 'gWidgetsXXX packages', such as gWidgetstcltk, needs to be installed. Some icons are on loan from the scigraphica project http://scigraphica.sourceforge.net.
Author: John Verzani. Based on the iwidgets code of Simon Urbanek and suggestions by Simon Urbanek, Philippe Grosjean and Michael Lawrence
Maintainer: John Verzani

Diff between gWidgets versions 0.0-53 dated 2014-07-20 and 0.0-54 dated 2014-08-27

 DESCRIPTION                |    6 +++---
 MD5                        |   12 ++++++------
 NEWS                       |   12 ++++++++++++
 R/gcommandline.R           |    4 ++--
 R/gvariables.R             |   17 +++++++++--------
 inst/doc/addingToolkit.pdf |binary
 inst/doc/gWidgets.pdf      |binary
 7 files changed, 32 insertions(+), 19 deletions(-)

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New package dotenv with initial version 1.0
Package: dotenv
Title: Load environment variables from .env
Version: 1.0
Authors@R: "Gabor Csardi [aut, cre]"
Description: Load configuration from a .env file, that is in the current working directory, into environment variables.
License: MIT + file LICENSE
LazyData: true
Imports: magrittr, falsy
URL: https://github.com/gaborcsardi/dotenv
BugReports: https://github.com/gaborcsardi/dotenv/issues
Packaged: 2014-08-27 19:55:50 UTC; gaborcsardi
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 23:42:52

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Package bfast updated to version 1.5.7 with previous version 1.4.4 dated 2013-03-27

Title: Breaks For Additive Season and Trend (BFAST)
Description: BFAST integrates the decomposition of time series into trend, seasonal, and remainder components with methods for detecting and characterizing abrupt changes within the trend and seasonal components. BFAST can be used to analyze different types of satellite image time series and can be applied to other disciplines dealing with seasonal or non-seasonal time series, such as hydrology, climatology, and econometrics. The algorithm can be extended to label detected changes with information on the parameters of the fitted piecewise linear models. BFAST monitoring functionality is added based on a paper that has been submitted to Remote Sensing of Environment. BFAST monitor provides functionality to detect disturbance in near real-time based on BFAST-type models. BFAST approach is flexible approach that handles missing data without interpolation. Furthermore now different models can be used to fit the time series data and detect structural changes (breaks).
Author: Jan Verbesselt [aut, cre], Achim Zeileis [aut], Rob Hyndman [ctb]
Maintainer: Jan Verbesselt

Diff between bfast versions 1.4.4 dated 2013-03-27 and 1.5.7 dated 2014-08-27

 DESCRIPTION            |   57 ++++++++++++----------------
 MD5                    |   44 ++++++++++++---------
 NAMESPACE              |   44 ++++++++++++++-------
 NEWS                   |   12 +++++
 R/bfast.R              |   57 ++++++++++++++--------------
 R/bfast01.R            |only
 R/bfast01classify.R    |only
 R/bfastts.R            |   13 ++++--
 R/plot.bfast.R         |    1 
 R/seasonal.R           |   48 ++++++++++++-----------
 data/harvest.rda       |binary
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 data/som.rda           |binary
 data/somaliadat.rda    |binary
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 man/bfast01classify.Rd |only
 man/bfastmonitor.Rd    |   32 +++++++--------
 man/bfastpp.Rd         |    1 
 man/bfastts.Rd         |   23 +++--------
 man/dates.Rd           |    4 -
 man/ndvi.Rd            |only
 man/plot.bfast.Rd      |    3 -
 man/som.Rd             |    4 +
 26 files changed, 255 insertions(+), 201 deletions(-)

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New package lmeVarComp with initial version 1.0
Package: lmeVarComp
Type: Package
Title: Testing for a subset of variance components in linear mixed models
Version: 1.0
Date: 2014-08-27
Author: Yichi Zhang
Maintainer: Yichi Zhang
Description: Test zero variance components in linear mixed models and test additivity in nonparametric regression using the restricted likelihood ratio test and the generalized F-test.
License: GPL (>= 2)
Suggests: RLRsim, varComp
ByteCompile: yes
NeedsCompilation: yes
Packaged: 2014-08-27 17:33:32 UTC; yzhang52
Repository: CRAN
Date/Publication: 2014-08-27 21:17:18

More information about lmeVarComp at CRAN
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Package gsubfn updated to version 0.6-6 with previous version 0.6-5 dated 2012-10-22

Title: Utilities for strings and function arguments.
Description: gsubfn is like gsub but can take a replacement function or certain other objects instead of the replacement string. Matches and back references are input to the replacement function and replaced by the function output. gsubfn can be used to split strings based on content rather than delimiters and for quasi-perl-style string interpolation. The package also has facilities for translating formulas to functions and allowing such formulas in function calls instead of functions. This can be used with R functions such as apply, sapply, lapply, optim, integrate, xyplot, Filter and any other function that expects another function as an input argument or functions like cat or sql calls that may involve strings where substitution is desirable.
Author: G. Grothendieck
Maintainer: G. Grothendieck

Diff between gsubfn versions 0.6-5 dated 2012-10-22 and 0.6-6 dated 2014-08-27

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 gsubfn-0.6-6/gsubfn/DESCRIPTION                                    |   33 ++++------
 gsubfn-0.6-6/gsubfn/MD5                                            |   27 ++++----
 gsubfn-0.6-6/gsubfn/NAMESPACE                                      |    4 -
 gsubfn-0.6-6/gsubfn/R/fn.R                                         |    4 -
 gsubfn-0.6-6/gsubfn/R/gsubfn.R                                     |   13 ++-
 gsubfn-0.6-6/gsubfn/R/read.pattern.R                               |only
 gsubfn-0.6-6/gsubfn/R/strapplyc.R                                  |    7 +-
 gsubfn-0.6-6/gsubfn/R/zzz.R                                        |    3 
 gsubfn-0.6-6/gsubfn/build                                          |only
 gsubfn-0.6-6/gsubfn/inst/NEWS                                      |    8 ++
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 18 files changed, 71 insertions(+), 56 deletions(-)

More information about gsubfn at CRAN
Permanent link

Package ptinpoly updated to version 2.4 with previous version 2.1 dated 2014-04-30

Title: Point-In-Polyhedron Test (2D and 3D)
Description: Function 'pip3d' tests whether a point in 3D space is within, exactly on, or outside an enclosed surface defined by a triangular mesh. Function 'pip2d' tests whether a point in 2D space is within, exactly on, or outside a polygon.
Author: Jose M. Maisog, Yuan Wang, George Luta, Jianfei Liu
Maintainer: Jose M. Maisog

Diff between ptinpoly versions 2.1 dated 2014-04-30 and 2.4 dated 2014-08-27

 DESCRIPTION           |   19 ++++++------
 MD5                   |   28 +++++++++---------
 NAMESPACE             |    4 +-
 R/blocks2vf.R         |   24 +++++++++++++++-
 data/comb.rda         |binary
 data/faces.rda        |binary
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 man/pip2d.Rd          |    6 ++--
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 src/kodtree.h         |    2 -
 src/pinpolyhedronA.cc |   74 +++++++++++++++++++++++++++++++++-----------------
 15 files changed, 123 insertions(+), 72 deletions(-)

More information about ptinpoly at CRAN
Permanent link

Package R.filesets updated to version 2.6.0 with previous version 2.4.0 dated 2014-02-28

Title: Easy handling of and access to files organized in structured directories
Description: A file set refers to a set of files located in one or more directories on the file system. This package provides classes and methods to locate, setup, subset, navigate and iterate such sets. The API is designed such that these classes can be extended via inheritance to provide a richer API for special file formats. Moreover, a specific name format is defined such that filenames and directories can be considered to have full names which consists of a name followed by comma-separated tags. This adds additional flexibility to identify file sets and individual files. NOTE: This package's API should be considered to be in an beta stage. Its main purpose is currently to support the aroma.* packages, where it is one of the main core components; if you decide to build on top of this package, please contact the author first.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson

Diff between R.filesets versions 2.4.0 dated 2014-02-28 and 2.6.0 dated 2014-08-27

 DESCRIPTION                                         |   16 +-
 MD5                                                 |   54 ++++---
 NAMESPACE                                           |    3 
 NEWS                                                |   75 ++++++++++
 R/ChecksumFileSet.R                                 |    6 
 R/FullNameInterface.appendFullNameTranslatorByNnn.R |    2 
 R/GenericDataFile.R                                 |   30 +++-
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 R/GenericDataFileSet.R                              |  145 ++++++++++++--------
 R/GenericDataFileSet.getChecksum.R                  |    2 
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 34 files changed, 454 insertions(+), 138 deletions(-)

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Permanent link

New package shopifyr with initial version 0.28
Package: shopifyr
Type: Package
Title: An R Interface to the Shopify API
Version: 0.28
Date: 2014-07-28
Author: Charlie Friedemann
Maintainer: Charlie Friedemann
Description: An interface to the API of the E-commerce service Shopify (http://docs.shopify.com/api)
URL: https://github.com/charliebone/shopifyr/
License: GPL-3
Depends: R (>= 3.0), RCurl
Imports: R6 (>= 2.0), RJSONIO
Collate: 'Announcement.R' 'ApplicationCharge.R' 'Article.R' 'Asset.R' 'Blog.R' 'CarrierService.R' 'Checkout.R' 'Collect.R' 'Comment.R' 'Country.R' 'CustomCollection.R' 'Customer.R' 'CustomerGroup.R' 'Event.R' 'Fulfillment.R' 'FulfillmentService.R' 'Location.R' 'MetaField.R' 'Order.R' 'OrderRisks.R' 'Page.R' 'Product.R' 'ProductImage.R' 'ProductVariant.R' 'Province.R' 'RecurringApplicationCharge.R' 'Redirect.R' 'Refund.R' 'ScriptTag.R' 'Shop.R' 'private.R' 'Webhook.R' 'Transaction.R' 'Theme.R' 'SmartCollection.R' 'ShopifyShop.R' 'shopfyr-package.R'
Packaged: 2014-08-27 15:24:00 UTC; Charlie
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 18:04:04

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Package pscl updated to version 1.4.6 with previous version 1.04.4 dated 2012-06-13

Title: Political Science Computational Laboratory, Stanford University
Description: Bayesian analysis of item-response theory (IRT) models, roll call analysis; computing highest density regions; maximum likelihood estimation of zero-inflated and hurdle models for count data; goodness-of-fit measures for GLMs; data sets used in writing and teaching at the Political Science Computational Laboratory; seats-votes curves.
Author: Simon Jackman, with contributions from Alex Tahk, Achim Zeileis, Christina Maimone and Jim Fearon
Maintainer: Simon Jackman

Diff between pscl versions 1.04.4 dated 2012-06-13 and 1.4.6 dated 2014-08-27

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 pscl-1.4.6/pscl/MD5                            |   77 +++++++++++++------------
 pscl-1.4.6/pscl/NAMESPACE                      |    1 
 pscl-1.4.6/pscl/NEWS                           |   13 +++-
 pscl-1.4.6/pscl/R/ideal.r                      |    5 -
 pscl-1.4.6/pscl/R/odTest.R                     |    2 
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 pscl-1.4.6/pscl/R/zeroinfl.R                   |   18 ++---
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 pscl-1.4.6/pscl/man/constrain.legis.Rd         |   23 ++-----
 pscl-1.4.6/pscl/man/extractRollCallObject.Rd   |    9 --
 pscl-1.4.6/pscl/man/hitmiss.Rd                 |    1 
 pscl-1.4.6/pscl/man/hurdletest.Rd              |    2 
 pscl-1.4.6/pscl/man/ideal.Rd                   |   54 +++++------------
 pscl-1.4.6/pscl/man/idealToMCMC.Rd             |    9 --
 pscl-1.4.6/pscl/man/iraqVote.Rd                |    9 --
 pscl-1.4.6/pscl/man/odTest.Rd                  |    1 
 pscl-1.4.6/pscl/man/pR2.Rd                     |    1 
 pscl-1.4.6/pscl/man/plot.predict.ideal.Rd      |    9 --
 pscl-1.4.6/pscl/man/politicalInformation.Rd    |    1 
 pscl-1.4.6/pscl/man/postProcess.Rd             |   31 ++--------
 pscl-1.4.6/pscl/man/presidentialElections.Rd   |   17 ++---
 pscl-1.4.6/pscl/man/readKH.Rd                  |    6 -
 pscl-1.4.6/pscl/man/vuong.Rd                   |    3 
 pscl-1.4.6/pscl/src/IDEAL.c                    |    3 
 pscl-1.4.6/pscl/src/dtnorm.c                   |    1 
 pscl-1.4.6/pscl/src/rigamma.c                  |   12 ---
 pscl-1.4.6/pscl/src/updatex.c                  |    1 
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 42 files changed, 164 insertions(+), 240 deletions(-)

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Package MultiSV updated to version 0.0-67 with previous version 0.0-62 dated 2014-07-02

Title: MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing
Description: MultiSV is an R package for identification of structural variations in multiple populations based on whole genome resequencing. It fits linear mixed model and identifies structural variations in multiple populations using whole genome sequencing data. It could also be manipulated to use on RNA-seq data for differential gene expression (implementation in future releases). Main steps for analysis include generating read depth in bins using ComputeBinCounts. conversion of bins to MultiSV format using Bin2MultiSV. Finally, identification of structural variations using CallMultiSV.
Author: Khurram Maqbool
Maintainer: Khurram Maqbool

Diff between MultiSV versions 0.0-62 dated 2014-07-02 and 0.0-67 dated 2014-08-27

 MultiSV-0.0-62/MultiSV/R/MultiSV.Data.R          |only
 MultiSV-0.0-67/MultiSV/DESCRIPTION               |   27 ++++++++------
 MultiSV-0.0-67/MultiSV/MD5                       |   17 ++++----
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 MultiSV-0.0-67/MultiSV/data/MultiSV.Data.rda     |binary
 MultiSV-0.0-67/MultiSV/inst/CITATION             |    2 -
 MultiSV-0.0-67/MultiSV/inst/extdata/MultiSV.conf |   14 +++----
 MultiSV-0.0-67/MultiSV/man/CallMultiSV.Rd        |    8 +++-
 MultiSV-0.0-67/MultiSV/man/ComputeBinCounts.Rd   |    4 +-
 MultiSV-0.0-67/MultiSV/man/MultiSVData.Rd        |    7 ++-
 10 files changed, 46 insertions(+), 77 deletions(-)

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Package fwsim updated to version 0.3.2 with previous version 0.3.1 dated 2014-04-25

Title: Fisher-Wright Population Simulation
Description: Simulates a population under the Fisher-Wright model (fixed or stochastic population size) with a one-step neutral mutation process (stepwise mutation model, logistic mutation model and exponential mutation model supported). The stochastic population sizes are random Poisson distributed and different kinds of population growth are supported. For the stepwise mutation model, it is possible to specify locus and direction specific mutation rate (in terms of upwards and downwards mutation rate). Intermediate generations can be saved in order to study e.g. drift.
Author: Mikkel Meyer Andersen and Poul Svante Eriksen
Maintainer: Mikkel Meyer Andersen

Diff between fwsim versions 0.3.1 dated 2014-04-25 and 0.3.2 dated 2014-08-27

 DESCRIPTION            |   10 +--
 MD5                    |   20 ++++---
 NAMESPACE              |    1 
 NEWS                   |    3 +
 R/RcppExports.R        |    4 +
 R/fwsim.R              |  128 +++++++++++++++++++++++++++++++++++++++++++++++++
 R/print.R              |    6 +-
 R/summary.R            |   36 +++++++++----
 man/fwsim.Rd           |   11 +++-
 src/RcppExports.cpp    |   22 ++++++++
 src/fwpopsim_fixed.cpp |only
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 12 files changed, 214 insertions(+), 27 deletions(-)

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New package falsy with initial version 1.0
Package: falsy
Title: Define truthy and falsy values
Version: 1.0
Authors@R: "Gabor Csardi [aut, cre]"
Description: A value is falsy if it is NULL, FALSE, the empty string, zero, or an empty vector or list. Other values are truthy. The new %&&% and %||% operators work with falsy and truthy values and can be used for concise conditional execution.
License: MIT + file LICENSE
Suggests: testthat
URL: https://github.com/gaborcsardi/falsy
BugReports: https://github.com/gaborcsardi/falsy/issues
Packaged: 2014-08-27 16:10:35 UTC; gaborcsardi
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 18:52:29

More information about falsy at CRAN
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New package decompr with initial version 1.1
Package: decompr
Type: Package
Title: Export Decomposition (Wang-Wei-Zhu and source)
Version: 1.1
Date: 2014-08-27
Author: Bastiaan Quast
Maintainer: Bastiaan Quast
Description: The R package 'decompr' implements two export decomposition algorithms. Firstly, the Wang-Wei-Zhu (Wang, Wei, and Zhu 2013) algorithm splits bilateral gross exports into 16 value added components. Secondly, the Source decomposition algorithm derives the value added origin of exports by country and industry, which is also based on Wang, Wei, and Zhu (2013).
Depends: R (>= 2.10)
License: GPL-3
Packaged: 2014-08-27 13:03:19 UTC; quast2
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 18:09:17

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New package Crossover with initial version 0.1-10
Package: Crossover
Type: Package
Title: Crossover Designs
Version: 0.1-10
Author: Kornelius Rohmeyer
Maintainer: Kornelius Rohmeyer
Description: Package Crossover provides different crossover designs from combinatorial or search algorithms as well as from literature and a GUI to access them.
Depends: R (>= 3.0.2), rJava (>= 0.8-3), CommonJavaJars (>= 1.0.5), JavaGD, ggplot2
Imports: MASS, crossdes (>= 1.1-1), xtable, methods, Matrix, multcomp, stats4, digest
Suggests: knitr, RUnit, nlme
SystemRequirements: Java (>= 5.0)
LinkingTo: Rcpp (>= 0.10.3), RcppArmadillo (>= 0.2.0)
License: GPL-2
VignetteBuilder: knitr
URL: https://github.com/kornl/Crossover/wiki
BugReports: https://github.com/kornl/Crossover/issues
Packaged: 2014-08-27 14:36:10 UTC; kornel
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-27 17:28:51

More information about Crossover at CRAN
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Package WhopGenome updated to version 0.8.9 with previous version 0.8.2 dated 2013-12-03

Title: High-speed processing of whole-genome VCF-format variation data, FASTA-format sequence data and several alignments formats.
Description: WhopGenome's provides very fast access to whole genome, population scale variation data from VCF files and sequence data from FASTA-formatted files. It also reads in alignments from FASTA, Phylip, MAF and other file formats. Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
Author: Ulrich Wittelsbuerger
Maintainer: Ulrich Wittelsbuerger

Diff between WhopGenome versions 0.8.2 dated 2013-12-03 and 0.8.9 dated 2014-08-27

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 WhopGenome-0.8.9/WhopGenome/man/vcf_getregion.Rd                           |    4 
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 WhopGenome-0.8.9/WhopGenome/man/whop.ped.males.Rd                          |    4 
 WhopGenome-0.8.9/WhopGenome/man/whop.ucsc.query.Rd                         |    9 
 WhopGenome-0.8.9/WhopGenome/src/Makevars                                   |    9 
 WhopGenome-0.8.9/WhopGenome/src/Makevars.win                               |    3 
 WhopGenome-0.8.9/WhopGenome/src/functor_common.h                           |   77 
 WhopGenome-0.8.9/WhopGenome/src/rdnapp_MAF.h                               |    3 
 WhopGenome-0.8.9/WhopGenome/src/readdnapp.cpp                              |    8 
 WhopGenome-0.8.9/WhopGenome/src/t_info.cpp                                 |    2 
 WhopGenome-0.8.9/WhopGenome/src/t_main.cpp                                 |    7 
 WhopGenome-0.8.9/WhopGenome/src/t_read.cpp                                 |   32 
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New package statebins with initial version 1.0
Package: statebins
Type: Package
Title: statebins is an alternative to choropleth maps for USA States
Version: 1.0
Date: 2014-08-26
Author: Bob Rudis (@hrbrmstr)
Maintainer: Bob Rudis
Description: statebins is an alternative to choropleth maps for USA States and is based on work by the Washington Post graphics department in their report on "The states most threatened by trade". statebins preserves as much of the geographic placement of the states as possible but has the look and feel of a traditional heatmap. Functions are provided that allow for use of both a binned, discrete scale and continuous scale depending on what is needed for the underlying data.
URL: http://github.com/hrbrmstr/statebins
BugReports: https://github.com/hrbrmstr/statebins/issues
License: MIT + file LICENSE
Suggests: testthat
Depends: R (>= 3.0.0), ggplot2, grid, scales, gridExtra, RColorBrewer
Packaged: 2014-08-27 13:24:41 UTC; bob
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 16:35:46

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Package mediation updated to version 4.4.2 with previous version 4.4.1 dated 2014-08-13

Title: Causal Mediation Analysis
Description: mediation allows both parametric and nonparametric causal mediation analysis. It implements the methods and suggestions in Imai, Keele and Yamamoto (2010), Imai, Keele and Tingley (2010), Imai, Tingley and Yamamoto (2013), Imai and Yamamoto (2013) and Yamamoto (2013). In addition to the estimation of causal mediation effects, the software also allows researchers to conduct sensitivity analysis for certain parametric models.
Author: Dustin Tingley , Teppei Yamamoto , Kentaro Hirose , Luke Keele , Kosuke Imai
Maintainer: Teppei Yamamoto

Diff between mediation versions 4.4.1 dated 2014-08-13 and 4.4.2 dated 2014-08-27

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Package SemiParSampleSel updated to version 1.1-1 with previous version 1.1 dated 2014-03-11

Title: Semiparametric Sample Selection Modelling with Continuous Response
Description: Routine for fitting continuous response copula sample selection models with semiparametric predictors, including linear and nonlinear effects.
Author: Giampiero Marra, Rosalba Radice and Malgorzata Wojtys
Maintainer: Giampiero Marra

Diff between SemiParSampleSel versions 1.1 dated 2014-03-11 and 1.1-1 dated 2014-08-27

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Package GMD updated to version 0.3.3 with previous version 0.3.1.1 dated 2012-02-06

Title: Generalized Minimum Distance of distributions
Description: GMD is a package for non-parametric distance measurement between two discrete frequency distributions.
Author: Xiaobei Zhao [aut, cre, cph], Albin Sandelin [aut]
Maintainer: Xiaobei Zhao

Diff between GMD versions 0.3.1.1 dated 2012-02-06 and 0.3.3 dated 2014-08-27

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New package SelvarMix with initial version 1.0
Package: SelvarMix
Type: Package
Title: Regularization for variable selection in model-based clustering and discriminant analysis.
Version: 1.0
Date: 2014-04-03
Author: Mohammed Sedki, Gilles Celeux, Cathy Maugis-Rabusseau
Maintainer: Mohammed Sedki
Description: Regularization for variable selection in model-based clustering and discriminant analysis
License: GPL (>= 3)
Imports: Rcpp (>= 0.11.1), glasso, parallel, Rmixmod
LinkingTo: Rcpp, RcppArmadillo
Packaged: 2014-08-27 08:54:54 UTC; sedki
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-27 11:13:29

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New package rsdmx with initial version 0.3
Package: rsdmx
Version: 0.3
Date: 2014-08-27
Title: A package to read SDMX data and metadata
Authors@R: c( person("Emmanuel", "Blondel", role = c("aut", "cre"), email = "emmanuel.blondel1@gmail.com"), person("Matthieu", "Stigler", role = c("ctb")))
Maintainer: Emmanuel Blondel
Depends: R (>= 2.15)
Imports: methods, XML (>= 3.96-1.1), RCurl, plyr
Suggests: testthat
Description: The package hosts a set of classes and methods to parse/read SDMX data and metadata.
License: GPL (>= 2)
URL: https://github.com/opensdmx/rsdmx
BugReports: https://github.com/opensdmx/rsdmx/issues
LazyLoad: yes
Collate: Class-SDMXSchema.R Class-SDMXType.R Class-SDMXStructureType.R Class-SDMXHeader.R Class-SDMX.R Class-SDMXGenericData.R Class-SDMXCompactData.R Class-SDMXMessageGroup.R Class-SDMXConcept.R Class-SDMXConceptScheme.R Class-SDMXConcepts.R Class-SDMXCode.R Class-SDMXCodelist.R Class-SDMXCodelists.R Class-SDMXDimension.R Class-SDMXTimeDimension.R Class-SDMXPrimaryMeasure.R Class-SDMXAttribute.R Class-SDMXComponents.R Class-SDMXDataStructure.R Class-SDMXDataStructures.R Class-SDMXDataStructureDefinition.R SDMXSchema-methods.R SDMXType-methods.R SDMXStructureType-methods.R SDMXHeader-methods.R SDMX-methods.R SDMXGenericData-methods.R SDMXCompactData-methods.R SDMXMessageGroup-methods.R SDMXConcept-methods.R SDMXConceptScheme-methods.R SDMXConcepts-methods.R SDMXCode-methods.R SDMXCodelist-methods.R SDMXCodelists-methods.R SDMXDimension-methods.R SDMXTimeDimension-methods.R SDMXPrimaryMeasure-methods.R SDMXAttribute-methods.R SDMXComponents-methods.R SDMXDataStructure-methods.R SDMXDataStructures-methods.R SDMXDataStructureDefinition-methods.R readSDMX.R
Packaged: 2014-08-27 08:54:13 UTC; Utilisateur
Author: Emmanuel Blondel [aut, cre], Matthieu Stigler [ctb]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 11:13:31

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Package arm updated to version 1.7-07 with previous version 1.7-05 dated 2014-08-01

Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing lm, glm, svy.glm, merMod and polr outputs.
Author: Andrew Gelman [aut], Yu-Sung Su [aut, cre], Masanao Yajima [ctb], Jennifer Hill [ctb], Maria Grazia Pittau [ctb], Jouni Kerman [ctb], Tian Zheng [ctb], Vicent Dorie [ctb]
Maintainer: Yu-Sung Su

Diff between arm versions 1.7-05 dated 2014-08-01 and 1.7-07 dated 2014-08-27

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Package RHive updated to version 2.0-0.1 with previous version 2.0-0.0 dated 2014-04-16

Title: R and Hive
Description: RHive is an R extension facilitating distributed computing via HIVE query. It provides an easy to use HQL like SQL and R objects and functions in HQL.
Author: NexR
Maintainer: Johan Ahn

Diff between RHive versions 2.0-0.0 dated 2014-04-16 and 2.0-0.1 dated 2014-08-27

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Package pamr updated to version 1.55 with previous version 1.54.1 dated 2013-07-25

Title: Pam: prediction analysis for microarrays
Description: Some functions for sample classification in microarrays
Author: T. Hastie, R. Tibshirani, Balasubramanian Narasimhan, Gil Chu
Maintainer: Rob Tibshirani

Diff between pamr versions 1.54.1 dated 2013-07-25 and 1.55 dated 2014-08-27

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Package blkergm updated to version 1.1 with previous version 1.0 dated 2013-10-19

Title: Fitting block ERGM given the block structure on social networks
Description: This package is an extension to the "ergm" package which implements the block ergms.
Author: Xiaolin Yang [aut, cre], Stephen E. Fienberg [aut], Alessandro Rinaldo [aut], Han Liu [aut], Michael Rosenblum [aut]
Maintainer: Xiaolin Yang

Diff between blkergm versions 1.0 dated 2013-10-19 and 1.1 dated 2014-08-27

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Tue, 26 Aug 2014

Package GoFKernel updated to version 2.0-4 with previous version 2.0-3 dated 2014-07-15

Title: GoFKernel: Testing Goodness-of-fit with the Kernel Density Estimator
Description: Tests of goodness-of-fit based on kernel smoothing of the data
Author: Jose M. Pavia
Maintainer: Jose M. Pavia

Diff between GoFKernel versions 2.0-3 dated 2014-07-15 and 2.0-4 dated 2014-08-26

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Package bigsplines updated to version 1.0-3 with previous version 1.0-2 dated 2014-07-12

Title: Smoothing splines for large samples
Description: Fits smoothing spline regression models using scalable algorithms designed for large samples. Five marginal spline types are supported: cubic, different cubic, cubic periodic, cubic thin-plate, and nominal. Parametric predictors are also supported. Response can be Gaussian or non-Gaussian: Binomial, Poisson, Gamma, Inverse Gaussian, or Negative Binomial.
Author: Nathaniel E. Helwig
Maintainer: Nathaniel E. Helwig

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Package swirl updated to version 2.2.16 with previous version 2.2.15 dated 2014-08-08

Title: Learn R, in R.
Description: swirl turns the R console into an interactive learning environment. Users receive immediate feedback as they are guided through self-paced lessons in data science and R programming.
Author: Nick Carchedi [aut, cre], Bill Bauer [aut], Gina Grdina [aut], Sean Kross [aut]
Maintainer: Nick Carchedi

Diff between swirl versions 2.2.15 dated 2014-08-08 and 2.2.16 dated 2014-08-26

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New package rucm with initial version 0.3
Package: rucm
Type: Package
Title: Implementation of Unobserved Components Model (UCM) in R
Version: 0.3
Date: 2014-08-25
Author: Kaushik Roy Chowdhury
Maintainer: Kaushik Roy Chowdhury
Description: Unobserved Components Models (introduced in Harvey, A. (1989), Forecasting, structural time series models and the Kalman filter, Cambridge New York: Cambridge University Press) decomposes a time series into components such as trend, seasonal, cycle, and the regression effects due to predictor series which captures the salient features of the series to predict its behavior.
License: GPL (>= 2)
Depends: KFAS
Packaged: 2014-08-25 09:54:52 UTC; k.roy.chowdhury
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-26 22:55:16

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Package phytools updated to version 0.4-31 with previous version 0.4-21 dated 2014-06-28

Title: Phylogenetic Tools for comparative biology (and other things)
Description: phytools provides various functions for phylogenetic analysis, mostly relevant to comparative biology.
Author: Liam J. Revell
Maintainer: Liam J. Revell

Diff between phytools versions 0.4-21 dated 2014-06-28 and 0.4-31 dated 2014-08-26

 DESCRIPTION             |   10 +++++-----
 MD5                     |   25 +++++++++++++------------
 NAMESPACE               |   10 ++++++----
 R/contMap.R             |   11 +++++++++++
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 R/threshBayes.R         |    7 ++++---
 R/utilities.R           |    2 +-
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 14 files changed, 119 insertions(+), 77 deletions(-)

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Package HistogramTools updated to version 0.3.1 with previous version 0.3 dated 2013-12-11

Title: Utility Functions for R Histograms
Description: This package provides a number of utility functions useful for manipulating large histograms. This includes methods to trim, subset, merge buckets, merge histograms, convert to CDF, and calculate information loss due to binning. It also provides a protocol buffer representations of the default R histogram class to allow histograms over large data sets to be computed and manipulated in a MapReduce environment.
Author: Murray Stokely [aut, cre], Tim Hesterberg [ctb]
Maintainer: Murray Stokely

Diff between HistogramTools versions 0.3 dated 2013-12-11 and 0.3.1 dated 2014-08-26

 ChangeLog                             |   18 +++++++++++++++++-
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Package extRemes updated to version 2.0-3 with previous version 2.0-2 dated 2014-08-18

Title: Extreme Value Analysis
Description: Functions for performing extreme value analysis.
Author: Eric Gilleland
Maintainer: Eric Gilleland

Diff between extRemes versions 2.0-2 dated 2014-08-18 and 2.0-3 dated 2014-08-26

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 extRemes-2.0-3/extRemes/R/fitdiagnostics.R |    6 ++----
 5 files changed, 7 insertions(+), 11 deletions(-)

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Package ecoengine updated to version 1.6 with previous version 1.5 dated 2014-08-13

Title: Programmatic interface to the API serving UC Berkeley's Natural History Data
Description: The ecoengine (http://ecoengine.berkeley.edu/) provides access to more than 2 million georeferenced specimen records from the Berkeley Natural History Museums. http://bnhm.berkeley.edu/
Author: Karthik Ram [aut, cre]
Maintainer: Karthik Ram

Diff between ecoengine versions 1.5 dated 2014-08-13 and 1.6 dated 2014-08-26

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 ecoengine-1.6/ecoengine/DESCRIPTION                                                      |   10 -
 ecoengine-1.6/ecoengine/MD5                                                              |   63 +++++-----
 ecoengine-1.6/ecoengine/NAMESPACE                                                        |    2 
 ecoengine-1.6/ecoengine/NEWS                                                             |    9 +
 ecoengine-1.6/ecoengine/R/ee_about.R                                                     |    8 -
 ecoengine-1.6/ecoengine/R/ee_checklists.R                                                |    6 
 ecoengine-1.6/ecoengine/R/ee_footprints.R                                                |    2 
 ecoengine-1.6/ecoengine/R/ee_map.R                                                       |   10 -
 ecoengine-1.6/ecoengine/R/ee_observations.R                                              |    7 -
 ecoengine-1.6/ecoengine/R/ee_search.R                                                    |   10 -
 ecoengine-1.6/ecoengine/R/ee_sensor_aggregation.R                                        |    2 
 ecoengine-1.6/ecoengine/R/ee_sensors.R                                                   |    7 -
 ecoengine-1.6/ecoengine/R/ee_sources.R                                                   |    2 
 ecoengine-1.6/ecoengine/README.md                                                        |    4 
 ecoengine-1.6/ecoengine/inst/Using_ecoengine.Rmd                                         |   15 +-
 ecoengine-1.6/ecoengine/inst/Using_ecoengine.md                                          |   13 +-
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 ecoengine-1.6/ecoengine/man/ee_about.Rd                                                  |    6 
 ecoengine-1.6/ecoengine/man/ee_checklists.Rd                                             |    6 
 ecoengine-1.6/ecoengine/man/ee_footprints.Rd                                             |    2 
 ecoengine-1.6/ecoengine/man/ee_map.Rd                                                    |   10 -
 ecoengine-1.6/ecoengine/man/ee_observations.Rd                                           |    4 
 ecoengine-1.6/ecoengine/man/ee_search.Rd                                                 |    2 
 ecoengine-1.6/ecoengine/man/ee_search_obs.Rd                                             |    6 
 ecoengine-1.6/ecoengine/man/ee_sensor_agg.Rd                                             |    2 
 ecoengine-1.6/ecoengine/man/ee_sensor_data.Rd                                            |    2 
 ecoengine-1.6/ecoengine/man/ee_sensors.Rd                                                |    4 
 ecoengine-1.6/ecoengine/man/ee_sources.Rd                                                |    2 
 37 files changed, 120 insertions(+), 96 deletions(-)

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