Title: Text Mining Package
Diff between tm versions 0.5-7 dated 2011-12-17 and 0.5-7.1 dated 2012-02-03
More information about tm at CRAN
Description: A framework for text mining applications within R.
Author: Ingo Feinerer [aut, cre]
Maintainer: Ingo Feinerer
tm-0.5-7.1/tm/DESCRIPTION | 8 +++---
tm-0.5-7.1/tm/MD5 | 29 ++++++++++++---------
tm-0.5-7.1/tm/R/matrix.R | 32 +++++++++++++++---------
tm-0.5-7.1/tm/R/reader.R | 3 +-
tm-0.5-7.1/tm/R/source.R | 13 +--------
tm-0.5-7.1/tm/inst/NEWS.Rd |only
tm-0.5-7.1/tm/inst/doc/extensions.pdf |binary
tm-0.5-7.1/tm/inst/doc/tm.pdf |binary
tm-0.5-7.1/tm/inst/stopwords/catalan.dat |only
tm-0.5-7.1/tm/man/PCorpus.Rd | 5 +++
tm-0.5-7.1/tm/man/VCorpus.Rd | 5 +++
tm-0.5-7.1/tm/man/readPDF.Rd | 3 --
tm-0.5-7.1/tm/man/stopwords.Rd | 4 ++-
tm-0.5-7.1/tm/man/termFreq.Rd | 41 +++++++++++++++++--------------
tm-0.5-7.1/tm/vignettes |only
tm-0.5-7/tm/inst/NEWS |only
tm-0.5-7/tm/inst/doc/references.bib |only
17 files changed, 79 insertions(+), 64 deletions(-)
Path: /cran/updated | permanent link
Title: Reading machine learning benchmark data sets from different
sources in their original format.
Diff between readMLData versions 0.9-4 dated 2012-01-31 and 0.9-5 dated 2012-02-03
More information about readMLData at CRAN
Description: The data are not part of the package. The package requires
to receive a path to a local copy of the data and their
description, which consists of an XML file "contents.xml" and R
scripts. Each data set is read into R as a data frame using its
own R script. An example of the description directory for some
of the data sets from UCI Machine Learning Repository is
available at "http://www.cs.cas.cz/~savicky/readMLData".
Author: Petr Savicky
Maintainer: Petr Savicky
ChangeLog | 13 ++++++-------
DESCRIPTION | 22 +++++++++++-----------
MD5 | 38 ++++++++++++++++++++------------------
NAMESPACE | 2 ++
R/check.R | 29 +++++++++++++++++++++++------
R/functions.R | 43 ++++++++++++++++++++++++++++---------------
R/utils.R | 20 ++++++++++++++++++++
R/xml.R | 3 ++-
man/analyzaData.Rd | 3 +++
man/checkAvailability.Rd |only
man/checkConsistency.Rd | 3 +++
man/checkType.Rd | 3 +++
man/dsDownload.Rd |only
man/dsRead.Rd | 17 +++++++++++------
man/dsSearch.Rd | 5 ++++-
man/dsSort.Rd | 5 ++++-
man/getFields.Rd | 5 ++++-
man/getType.Rd | 3 +++
man/prepareDSList.Rd | 23 ++++++++++++++++-------
man/readMLData-package.Rd | 44 ++++++++++++++++++++++++++++++++++----------
man/xml.Rd | 3 +++
21 files changed, 200 insertions(+), 84 deletions(-)
Path: /cran/updated | permanent link
Title: Various plotting functions
Diff between plotrix versions 3.3-5 dated 2012-01-25 and 3.3-6 dated 2012-02-03
More information about plotrix at CRAN
Description: Lots of plots, various labeling, axis and color scaling
functions.
Author: Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry
Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi,
Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl
Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa
Biancotto, Ofir Levy, Christophe Dutang, Peter Solymos, Robby
Engelmann, Michael Hecker, Felix Steinbeck, Hans Borchers
Maintainer: Jim Lemon
DESCRIPTION | 8 ++++----
INDEX | 2 ++
MD5 | 20 ++++++++++++--------
NAMESPACE | 2 ++
R/battleship.plot.R |only
R/box.heresy.R |only
R/brkdnNest.R | 2 +-
R/staxlab.R | 16 +++++++++++++---
R/taylor.diagram.R | 20 +++++++++++---------
man/battleship.plot.Rd |only
man/box.heresy.Rd |only
man/staxlab.Rd | 3 ++-
man/taylor.diagram.Rd | 3 ++-
13 files changed, 49 insertions(+), 27 deletions(-)
Path: /cran/updated | permanent link
Title: Simulation of chromosomal regions shared by family members.
Diff between IBDsim versions 0.8 dated 2011-10-24 and 0.9-1 dated 2012-02-03
More information about IBDsim at CRAN
Description: R package for simulation of IBD sharing among family
members. Using sex specific recombination rates from the Decode
map (2010) of the human genome, phased chromosomes are
simulated for all pedigree members, either by unconditional
'gene dropping' or conditional on a specified IBD pattern.
Regions compatible with the query IBD pattern (possibly
different from the conditional pattern) are subsequently
detected and summarized.
Author: Magnus Dehli Vigeland
Maintainer:
IBDsim-0.8/IBDsim/data/twoloops.rda |only
IBDsim-0.8/IBDsim/man/twoloops.Rd |only
IBDsim-0.9-1/IBDsim/DESCRIPTION | 10 +++++-----
IBDsim-0.9-1/IBDsim/MD5 | 24 +++++++++++-------------
IBDsim-0.9-1/IBDsim/R/IBDsim.R | 16 ++++++++--------
IBDsim-0.9-1/IBDsim/R/genedrop.R | 2 +-
IBDsim-0.9-1/IBDsim/R/ibd.runs.R | 4 ++--
IBDsim-0.9-1/IBDsim/R/ped_utils.R | 4 ++--
IBDsim-0.9-1/IBDsim/R/summary.ibd.R | 2 +-
IBDsim-0.9-1/IBDsim/data/DecodeMap.rda |binary
IBDsim-0.9-1/IBDsim/data/datalist | 1 -
IBDsim-0.9-1/IBDsim/data/dominant1.rda |binary
IBDsim-0.9-1/IBDsim/man/IBDsim.Rd | 2 +-
IBDsim-0.9-1/IBDsim/man/dominant1.Rd | 2 +-
14 files changed, 32 insertions(+), 35 deletions(-)
Path: /cran/updated | permanent link
Title: Data Analysis And Graphics data and functions
Diff between DAAG versions 1.10 dated 2012-01-25 and 1.12 dated 2012-02-03
More information about DAAG at CRAN
Description: various data sets used in examples and exercises in the
book Maindonald, J.H. and Braun, W.J. (2003, 2007, 2010) "Data
Analysis and Graphics Using R".
Author: John Maindonald and W. John Braun
Maintainer: W. John Braun
DESCRIPTION | 6 ++--
MD5 | 18 ++++++++------
NAMESPACE | 7 +++--
R/logisticsim.R | 2 -
R/plotSampDist.R |only
R/simulateSampDist.R |only
data/nassCDS.RData |binary
man/kiwishade.Rd | 59 +++++++++++++++++++++--------------------------
man/nassCDS.Rd | 60 +++++++++++++++++++++++++++++-------------------
man/plotSampDist.Rd |only
man/science.Rd | 48 +++++++++++++++++++-------------------
man/simulateSampDist.Rd |only
12 files changed, 107 insertions(+), 93 deletions(-)
Path: /cran/updated | permanent link
Title: descriptives by groups
Diff between compareGroups versions 0.1-4 dated 2011-04-26 and 1.0 dated 2012-02-03
More information about compareGroups at CRAN
Description: This package is meant to facilitate the construction of
bivariate table (descriptives of several variables between
groups) and generate reports in LaTeX, HTML or (CSV) plain
text. Also, it includes a graphical interface (GUI) to build
these tables more easily.
Author: Isaac Subirana, Héctor Sanz, Joan Vila
Maintainer: Isaac Subirana
compareGroups-0.1-4/compareGroups/R/plot.compareGroups.r |only
compareGroups-0.1-4/compareGroups/R/zzz.R |only
compareGroups-0.1-4/compareGroups/data/myData.rda |only
compareGroups-0.1-4/compareGroups/inst/doc/Sweave.sty |only
compareGroups-0.1-4/compareGroups/inst/doc/compareGroups_vignette.Rnw |only
compareGroups-0.1-4/compareGroups/inst/doc/compareGroups_vignette.bib |only
compareGroups-0.1-4/compareGroups/inst/doc/figures |only
compareGroups-0.1-4/compareGroups/inst/doc/make_latex.r |only
compareGroups-0.1-4/compareGroups/inst/doc/tables |only
compareGroups-0.1-4/compareGroups/man/myData.Rd |only
compareGroups-1.0/compareGroups/DESCRIPTION | 21
compareGroups-1.0/compareGroups/MD5 |only
compareGroups-1.0/compareGroups/NAMESPACE | 41
compareGroups-1.0/compareGroups/R/Cox.plot.R |only
compareGroups-1.0/compareGroups/R/KM.plot.R |only
compareGroups-1.0/compareGroups/R/KMg.plot.R |only
compareGroups-1.0/compareGroups/R/bar.plot.R |only
compareGroups-1.0/compareGroups/R/bar2.plot.R |only
compareGroups-1.0/compareGroups/R/box.plot.R |only
compareGroups-1.0/compareGroups/R/cGroupsGUI.R | 1567 ++++++----
compareGroups-1.0/compareGroups/R/cbind.createTable.R |only
compareGroups-1.0/compareGroups/R/chisq.test2.R | 15
compareGroups-1.0/compareGroups/R/compare.i.R | 362 +-
compareGroups-1.0/compareGroups/R/compareGroups.default.R | 189 +
compareGroups-1.0/compareGroups/R/compareGroups.formula.R | 130
compareGroups-1.0/compareGroups/R/createTable.R | 154
compareGroups-1.0/compareGroups/R/descrip.R | 32
compareGroups-1.0/compareGroups/R/descripSurv.R |only
compareGroups-1.0/compareGroups/R/export2csv.R | 82
compareGroups-1.0/compareGroups/R/export2html.R |only
compareGroups-1.0/compareGroups/R/export2latex.R | 96
compareGroups-1.0/compareGroups/R/export2latex.cbind.createTable.R |only
compareGroups-1.0/compareGroups/R/export2latex.createTable.R |only
compareGroups-1.0/compareGroups/R/logrank.pval.R |only
compareGroups-1.0/compareGroups/R/norm.plot.R | 53
compareGroups-1.0/compareGroups/R/plot.compareGroups.R |only
compareGroups-1.0/compareGroups/R/prepare.R |only
compareGroups-1.0/compareGroups/R/print.cbind.createTable.R |only
compareGroups-1.0/compareGroups/R/print.compareGroups.R | 27
compareGroups-1.0/compareGroups/R/print.createTable.R | 104
compareGroups-1.0/compareGroups/R/print.summary.compareGroups.R | 22
compareGroups-1.0/compareGroups/R/print.summary.createTable.r |only
compareGroups-1.0/compareGroups/R/rbind.compareGroups.R |only
compareGroups-1.0/compareGroups/R/rbind.createTable.R |only
compareGroups-1.0/compareGroups/R/summ.i.R | 10
compareGroups-1.0/compareGroups/R/summary.compareGroups.R | 3
compareGroups-1.0/compareGroups/R/summary.createTable.R |only
compareGroups-1.0/compareGroups/R/table.i.R | 136
compareGroups-1.0/compareGroups/R/update.compareGroups.R | 14
compareGroups-1.0/compareGroups/R/update.formula2.R | 6
compareGroups-1.0/compareGroups/R/z[.cbind.createTable.R |only
compareGroups-1.0/compareGroups/R/z[.compareGroups.R |only
compareGroups-1.0/compareGroups/R/z[.createTable.R |only
compareGroups-1.0/compareGroups/R/z[.rbind.compareGroups.R |only
compareGroups-1.0/compareGroups/R/z[.rbind.createTable.R |only
compareGroups-1.0/compareGroups/compareGroups-Ex.R | 483 +--
compareGroups-1.0/compareGroups/data/regicor.rda |binary
compareGroups-1.0/compareGroups/inst/doc/changelog.txt | 59
compareGroups-1.0/compareGroups/inst/doc/compareGroups_vignette.pdf |binary
compareGroups-1.0/compareGroups/man/cGroupsGUI.Rd | 10
compareGroups-1.0/compareGroups/man/compareGroups-internal.Rd | 32
compareGroups-1.0/compareGroups/man/compareGroups-package.Rd | 8
compareGroups-1.0/compareGroups/man/compareGroups.Rd | 146
compareGroups-1.0/compareGroups/man/createTable.Rd | 114
compareGroups-1.0/compareGroups/man/export2csv.Rd | 20
compareGroups-1.0/compareGroups/man/export2html.Rd |only
compareGroups-1.0/compareGroups/man/export2latex.Rd | 56
compareGroups-1.0/compareGroups/man/regicor.Rd | 55
compareGroups-1.0/compareGroups/man/varinfo.Rd | 18
compareGroups-1.0/compareGroups/vignettes |only
70 files changed, 2717 insertions(+), 1348 deletions(-)
Path: /cran/updated | permanent link
More information about catdata at CRAN
Path: /cran/new | permanent link
Title: analysis of complex survey samples
Diff between survey versions 3.27 dated 2012-01-06 and 3.28 dated 2012-02-03
More information about survey at CRAN
Description: Summary statistics, two-sample tests, generalised linear
models, cumulative link models, Cox models, loglinear models,
and general maximum pseudolikelihood estimation for multistage
stratified, cluster-sampled, unequally weighted survey samples.
Variances by Taylor series linearisation or replicate weights.
Post-stratification, calibration, and raking. Two-phase
subsampling designs. Graphics. Predictive margins by direct
standardization. PPS sampling without replacement. Principal
components, factor analysis.
Author: Thomas Lumley
Maintainer: Thomas Lumley
survey-3.27/survey/inst/doc/epi.dvi |only
survey-3.28/survey/DESCRIPTION | 20 ++++--
survey-3.28/survey/MD5 | 74 +++++++++++------------
survey-3.28/survey/NAMESPACE | 13 ++++
survey-3.28/survey/R/anova.svyglm.R | 6 -
survey-3.28/survey/R/multistage.R | 2
survey-3.28/survey/R/multivariate.R | 4 -
survey-3.28/survey/R/regtest.R | 8 +-
survey-3.28/survey/R/survey.R | 1
survey-3.28/survey/R/surveygraph.R | 4 -
survey-3.28/survey/R/surveyrep.R | 79 +++++++++++++++++++++++--
survey-3.28/survey/R/transform.R |only
survey-3.28/survey/R/twophase.R | 14 ++--
survey-3.28/survey/THANKS | 7 +-
survey-3.28/survey/inst/NEWS | 11 +++
survey-3.28/survey/inst/doc/domain.pdf |binary
survey-3.28/survey/inst/doc/epi.pdf |binary
survey-3.28/survey/inst/doc/phase1.pdf |binary
survey-3.28/survey/inst/doc/pps.pdf |binary
survey-3.28/survey/inst/doc/survey.pdf |binary
survey-3.28/survey/man/update.survey.design.Rd | 4 +
survey-3.28/survey/man/withReplicates.Rd | 37 +++++++++--
survey-3.28/survey/tests/DBIcheck.Rout.save | 10 +--
survey-3.28/survey/tests/api.Rout.save | 2
survey-3.28/survey/tests/caleg.Rout.save | 22 +++---
survey-3.28/survey/tests/check.Rout.save | 10 +--
survey-3.28/survey/tests/deff.Rout.save | 12 +++
survey-3.28/survey/tests/domain.Rout.save | 23 ++-----
survey-3.28/survey/tests/fpc.Rout.save | 12 +++
survey-3.28/survey/tests/kalton.Rout.save | 10 +--
survey-3.28/survey/tests/lonely.psu.Rout.save | 12 +--
survey-3.28/survey/tests/multistage.Rout.save | 10 +--
survey-3.28/survey/tests/nwts-cch.Rout.save | 2
survey-3.28/survey/tests/nwts.Rout.save | 20 +++---
survey-3.28/survey/tests/pps.Rout.save | 21 ++----
survey-3.28/survey/tests/quantile.Rout.save | 14 ++--
survey-3.28/survey/tests/rakecheck.Rout.save | 10 +--
survey-3.28/survey/tests/regpredict.Rout.save | 10 +--
survey-3.28/survey/tests/twophase.Rout.save | 10 +--
39 files changed, 312 insertions(+), 182 deletions(-)
Path: /cran/updated | permanent link
Title: Reads mass spectrometry data in Bruker *flex format
Diff between readBrukerFlexData versions 1.2.3 dated 2012-01-29 and 1.2.4 dated 2012-02-03
More information about readBrukerFlexData at CRAN
Description: Reads files generated by MALDI-TOF MS of Bruker Daltonics'
*flex series. Successfully tested for Bruker Daltonics'
Autoflex MS.
Author: Sebastian Gibb
Maintainer: Sebastian Gibb
readBrukerFlexData-1.2.3/readBrukerFlexData/inst/Examples/2010_05_19_Gibb_C8_A1/0_A1/1/1SLin/acqus |only
readBrukerFlexData-1.2.3/readBrukerFlexData/inst/Examples/2010_05_19_Gibb_C8_A1/0_A1/1/1SLin/pdata |only
readBrukerFlexData-1.2.3/readBrukerFlexData/inst/Examples/2010_05_19_Gibb_C8_A1/0_A1/1/1SLin/sptype |only
readBrukerFlexData-1.2.3/readBrukerFlexData/inst/Examples/2010_05_19_Gibb_C8_A1/0_A2/1/1SLin/acqus |only
readBrukerFlexData-1.2.3/readBrukerFlexData/inst/Examples/2010_05_19_Gibb_C8_A1/0_A2/1/1SLin/pdata |only
readBrukerFlexData-1.2.3/readBrukerFlexData/inst/Examples/2010_05_19_Gibb_C8_A1/0_A2/1/1SLin/sptype |only
readBrukerFlexData-1.2.3/readBrukerFlexData/inst/Examples/hpc/fid/0_A20/1/1SRef/acqus |only
readBrukerFlexData-1.2.3/readBrukerFlexData/inst/Examples/hpc/fid/0_A20/1/1SRef/pdata |only
readBrukerFlexData-1.2.3/readBrukerFlexData/inst/Examples/hpc/fid/0_A20/1/1SRef/sptype |only
readBrukerFlexData-1.2.4/readBrukerFlexData/DESCRIPTION | 8
readBrukerFlexData-1.2.4/readBrukerFlexData/MD5 | 27 --
readBrukerFlexData-1.2.4/readBrukerFlexData/NEWS | 4
readBrukerFlexData-1.2.4/readBrukerFlexData/R/double2singlePrecision.R | 2
readBrukerFlexData-1.2.4/readBrukerFlexData/R/mqReadBrukerFlex.R | 2
readBrukerFlexData-1.2.4/readBrukerFlexData/R/readBrukerFlexData.R | 95 +++++-----
readBrukerFlexData-1.2.4/readBrukerFlexData/man/readBrukerFlexData-package.Rd | 12 -
16 files changed, 74 insertions(+), 76 deletions(-)
Path: /cran/updated | permanent link
Title: Modern measures of population differentiation
Diff between mmod versions 0.2 dated 2012-01-27 and 0.2.1 dated 2012-02-03
More information about mmod at CRAN
Description: mmod provides functions for measuring population
divergence from genotypic data
Author: David Winter
Maintainer: David Winter
mmod-0.2.1/mmod/.gitignore | 2
mmod-0.2.1/mmod/DESCRIPTION | 7 +
mmod-0.2.1/mmod/MD5 | 48 ++++++------
mmod-0.2.1/mmod/NAMESPACE | 1
mmod-0.2.1/mmod/NEWS | 20 ++++-
mmod-0.2.1/mmod/R/D_Jost.R | 13 +--
mmod-0.2.1/mmod/R/Gst_Hedrick.R | 24 +++---
mmod-0.2.1/mmod/R/Gst_Nei.R | 13 +--
mmod-0.2.1/mmod/R/chao_bootstrap.R | 39 +++++++---
mmod-0.2.1/mmod/R/diff_stats.R | 12 +--
mmod-0.2.1/mmod/R/jacknife_pop.R | 11 +-
mmod-0.2.1/mmod/R/pairwise_D.R | 15 +---
mmod-0.2.1/mmod/R/pairwise_Gst_Hedrick.R | 2
mmod-0.2.1/mmod/R/rgenotypes.R |only
mmod-0.2.1/mmod/R/summarise_bootstrap.R | 12 +--
mmod-0.2.1/mmod/inst/doc/mmod-demo.Rnw | 104 ++++++++++++++--------------
mmod-0.2.1/mmod/inst/doc/mmod-demo.pdf |binary
mmod-0.2.1/mmod/man/Gst_Hedrick.Rd | 6 +
mmod-0.2.1/mmod/man/chao_bootstrap.Rd | 26 ++++++-
mmod-0.2.1/mmod/man/diff_stats.Rd | 4 +
mmod-0.2.1/mmod/man/jacknife_populations.Rd | 9 +-
mmod-0.2.1/mmod/man/pairwise_D.Rd | 6 -
mmod-0.2.1/mmod/man/pairwise_Gst_Hedrick.Rd | 4 -
mmod-0.2.1/mmod/man/rgenotypes.Rd |only
mmod-0.2.1/mmod/man/summarise_bootsrap.Rd | 2
mmod-0.2.1/mmod/mmod_0.2.1.tar.gz |only
mmod-0.2/mmod/chao_bootstrap.R |only
mmod-0.2/mmod/mmod_0.2.tar.gz |only
mmod-0.2/mmod/test/demo.Rnw |only
29 files changed, 219 insertions(+), 161 deletions(-)
Path: /cran/updated | permanent link
Title: Linear Model Bias Correction for RNA-Seq Data
Diff between lmbc versions 0.9 dated 2011-12-15 and 0.9.1 dated 2012-02-03
More information about lmbc at CRAN
Description: This is the package for implementing the method in "Bias
Correction in RNA-Seq Short-read Counts using Penalized
Regression." It first using a penalized regression to determine
an appropriate surrounding sequence, then refits the model
using the dinucleotide expansion.
Author: David Dalpiaz
Maintainer: David Dalpiaz
DESCRIPTION | 14 +++++--
MD5 | 4 +-
man/lmbc.Rd | 106 ++++--------------------------------------------------------
3 files changed, 19 insertions(+), 105 deletions(-)
Path: /cran/updated | permanent link
Title: A multiplatform GUI for drawing customizable graphs in R
Diff between GrapheR versions 1.9-71 dated 2011-12-27 and 1.9-75-2 dated 2012-02-03
More information about GrapheR at CRAN
Description: GrapheR is a multiplatform user interface for drawing
highly customizable graphs in R. It aims to be a valuable help
to quickly draw publishable graphs without any knowledge of R
commands. Six kinds of graph are available: histogram,
box-and-whisker plot, bar plot, pie chart, curve and scatter
plot.
Author: Maxime Hervé
Maintainer: Maxime Hervé
DESCRIPTION | 15 +
MD5 | 343 +++++++++++++++++++++++-----------------
NAMESPACE | 11 -
NEWS |only
R/active.erreur.R | 1
R/active.legende.R | 1
R/active.legende2.R | 1
R/affine.R | 1
R/aide.R | 2
R/barres.moy.R | 3
R/barres.prop.R | 3
R/code.ask.R | 1
R/code.data.R | 11 +
R/code.graph.R | 3
R/code.graph.axes.R | 36 +++-
R/code.graph.barres.R | 213 ++++++++++++++++--------
R/code.graph.barres.erreurs.R | 2
R/code.graph.moust.R | 42 +++-
R/code.graph.nuage.R | 245 ++++++++++++++++++++++++++--
R/code.graph.posleg.R | 2
R/code.graph.titre.R | 82 ++++++---
R/code.graphtype.R | 2
R/code.open.R | 1
R/col.barres.R | 1
R/col.bordures.R | 1
R/col.parts.R | 1
R/col.symboles.R | 1
R/convert.variable.R | 8
R/courbe.moy.R | 1
R/courbe.prop.R | 1
R/data.load1.R | 8
R/data.load2.R | 8
R/distrib.R | 5
R/enregistrer.R | 54 ++++--
R/fermer.GrapheR.R | 1
R/fr1.close.R | 1
R/fr1.openB.R | 43 ++---
R/fr1.openCa.R | 5
R/fr1.openCo.R | 5
R/fr1.openD.R | 1
R/fr1.openH.R | 5
R/fr1.openM.R | 55 +++++-
R/fr1.openN.R | 29 ++-
R/fr2.close.R | 1
R/fr2.openD.R | 1
R/fr2.opengraphe.R | 5
R/fr3.close.R | 1
R/fr3.openB.R | 45 ++---
R/fr3.openCa.R | 1
R/fr3.openCoN.R | 49 +++--
R/fr3.openD.R | 1
R/fr3.openH.R | 37 ++--
R/fr3.openM.R | 45 ++---
R/fr4.close.R | 1
R/fr4.openB.R | 1
R/fr4.openCa.R | 1
R/fr4.openCo.R | 1
R/fr4.openD.R | 1
R/fr4.openH.R | 1
R/fr4.openM.R | 55 ++++--
R/fr4.openN.R | 52 +-----
R/fr5.close.R | 1
R/fr5.openB.R | 1
R/fr5.openCa.R | 1
R/fr5.openCo.R | 1
R/fr5.openD.R |only
R/fr5.openH.R | 1
R/fr5.openM.R | 26 ---
R/fr5.openN.R | 95 +++++++----
R/fr6.close.R | 1
R/fr6.openB.R | 1
R/fr6.openCo.R | 1
R/fr6.openM.R | 22 --
R/fr6.openN.R |only
R/fr7.close.R | 1
R/graphe.axes.R | 16 +
R/graphe.box.R | 1
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R/run.GrapheR.R | 1
R/symboles.R | 1
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R/type.ligne.R | 1
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man/GrapheR-package.Rd | 4
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Title: Bayesian treed Gaussian process models
Diff between tgp versions 2.4-3 dated 2011-12-19 and 2.4-5 dated 2012-02-02
More information about tgp at CRAN
Description: Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes (GPs) with
jumps to the limiting linear model (LLM). Special cases also
implemented include Bayesian linear models, CART, treed linear
models, stationary separable and isotropic GPs, and GP
single-index models. Provides 1-d and 2-d plotting functions
(with projection and slice capabilities) and tree drawing,
designed for visualization of tgp-class output. Sensitivity
analysis and multi-resolution models are supported. Sequential
experimental design and adaptive sampling functions are also
provided, including ALM, ALC, and expected improvement. The
latter supports derivative-free optimization of noisy black-box
functions.
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
tgp-2.4-3/tgp/inst/doc/Makefile |only
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tgp-2.4-5/tgp/ChangeLog | 13 +++
tgp-2.4-5/tgp/DESCRIPTION | 34 ++++----
tgp-2.4-5/tgp/MD5 | 120 ++++++++++++++++---------------
tgp-2.4-5/tgp/NAMESPACE | 22 ++++-
tgp-2.4-5/tgp/R/predict.tgp.R | 4 -
tgp-2.4-5/tgp/demo/optim.R | 2
tgp-2.4-5/tgp/demo/sens.R | 2
tgp-2.4-5/tgp/inst/doc/optim.iRnw | 2
tgp-2.4-5/tgp/inst/doc/sens.iRnw | 2
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tgp-2.4-5/tgp/src/all_draws.c | 18 ++--
tgp-2.4-5/tgp/src/base.cc | 1
tgp-2.4-5/tgp/src/corr.cc | 14 +--
tgp-2.4-5/tgp/src/dopt.c | 6 -
tgp-2.4-5/tgp/src/exp.cc | 13 +--
tgp-2.4-5/tgp/src/exp_sep.cc | 17 ++--
tgp-2.4-5/tgp/src/gen_covar.c | 1
tgp-2.4-5/tgp/src/gp.cc | 109 +++++++++++++---------------
tgp-2.4-5/tgp/src/lh.c | 3
tgp-2.4-5/tgp/src/lik_post.c | 7 -
tgp-2.4-5/tgp/src/list.cc | 1
tgp-2.4-5/tgp/src/matern.cc | 19 ++--
tgp-2.4-5/tgp/src/matrix.c | 13 +--
tgp-2.4-5/tgp/src/model.cc | 6 -
tgp-2.4-5/tgp/src/mr_exp_sep.cc | 25 +++---
tgp-2.4-5/tgp/src/mstructs.cc | 2
tgp-2.4-5/tgp/src/params.cc | 17 ++--
tgp-2.4-5/tgp/src/predict.c | 7 -
tgp-2.4-5/tgp/src/predict_linear.c | 1
tgp-2.4-5/tgp/src/rand_draws.c | 3
tgp-2.4-5/tgp/src/rand_pdf.c | 3
tgp-2.4-5/tgp/src/randomkit.c | 2
tgp-2.4-5/tgp/src/rhelp.c | 9 +-
tgp-2.4-5/tgp/src/rhelp.h | 2
tgp-2.4-5/tgp/src/sim.cc | 18 ++--
tgp-2.4-5/tgp/src/temper.cc | 13 +--
tgp-2.4-5/tgp/src/tgp.cc | 42 +++++-----
tgp-2.4-5/tgp/src/tree.cc | 16 +++-
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61 files changed, 325 insertions(+), 293 deletions(-)
Path: /cran/updated | permanent link
Title: Serialize R objects to JSON, JavaScript Object Notation
Diff between RJSONIO versions 0.97-0 dated 2012-01-08 and 0.98-0 dated 2012-02-02
More information about RJSONIO at CRAN
Description: This is a package that allows conversion to and from data
in Javascript object notation (JSON) format. This allows R
objects to be inserted into Javascript/ECMAScript/ActionScript
code and allows R programmers to read and convert JSON content
to R objects. This is an alternative to rjson package. That
version was too slow for converting large R objects to JSON and
is not extensible, but a very useful prototype. It is fast for
parsing. This package uses methods, vectorized operations and
C code and callbacks to R functions for deserializing JSON
objects to R. Verison 0.4 of this package uses a new native
parser, implements the transformation code in C and allocates
memory efficiently (rather than concatenating because of event
driven parsing). The result is a significantly faster parsing
of large JSON documents.
Author: Duncan Temple Lang
Maintainer: Duncan Temple Lang
RJSONIO-0.97-0/RJSONIO/inst/doc/overview.aux |only
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RJSONIO-0.98-0/RJSONIO/Changes.html | 20
RJSONIO-0.98-0/RJSONIO/Changes.xml | 15
RJSONIO-0.98-0/RJSONIO/DESCRIPTION | 31
RJSONIO-0.98-0/RJSONIO/MD5 | 102
RJSONIO-0.98-0/RJSONIO/R/readJSON.R | 7
RJSONIO-0.98-0/RJSONIO/Web/index.html | 2
RJSONIO-0.98-0/RJSONIO/cleanup | 4
RJSONIO-0.98-0/RJSONIO/configure | 2976 ++++------
RJSONIO-0.98-0/RJSONIO/configure.in | 22
RJSONIO-0.98-0/RJSONIO/inst/sampleData/usaPolygons.as | 2
RJSONIO-0.98-0/RJSONIO/src/ConvertUTF.c | 4
RJSONIO-0.98-0/RJSONIO/src/Makevars | 3
RJSONIO-0.98-0/RJSONIO/src/Makevars.in | 3
RJSONIO-0.98-0/RJSONIO/src/Makevars.win | 2
RJSONIO-0.98-0/RJSONIO/src/RJSON.c | 4
RJSONIO-0.98-0/RJSONIO/src/libjson/JSONOptions.h | 70
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RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONChildren.h | 88
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONDebug.cpp | 6
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONDebug.h | 4
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONDefs.h | 43
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONDefs/GNU_C.h | 6
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONDefs/Strings_Defs.h | 2
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONGlobals.h |only
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONIterators.cpp | 52
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONMemory.cpp | 151
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONMemory.h | 49
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RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONNode.cpp | 234
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONNode.h | 468 -
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONNode_Mutex.cpp | 94
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RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONStream.h | 77
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONValidator.cpp | 50
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONValidator.h | 25
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONWorker.cpp | 301 -
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONWorker.h | 12
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONWriter.cpp | 166
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSON_Base64.cpp | 30
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/NumberToString.h | 156
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/internalJSONNode.cpp | 444 +
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/internalJSONNode.h | 268
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/libjson.cpp | 214
RJSONIO-0.98-0/RJSONIO/src/libjson/libjson.h | 136
RJSONIO-0.98-0/RJSONIO/src/libjson/makefile | 364 -
RJSONIO-0.98-0/RJSONIO/src/rlibjson.c | 95
RJSONIO-0.98-0/RJSONIO/testStream.R |only
60 files changed, 3985 insertions(+), 2888 deletions(-)
Path: /cran/updated | permanent link
Title: Interface between GRASS 6+ geographical information system and R
Diff between spgrass6 versions 0.7-8 dated 2012-02-01 and 0.7-9 dated 2012-02-02
More information about spgrass6 at CRAN
Description: Interpreted interface between GRASS 6+ geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 15 +++++++++++++++
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/bin_link.R | 2 +-
inst/ChangeLog | 15 +++++++++++++++
inst/doc/spgrass6_0.3.pdf |binary
6 files changed, 40 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Title: Soft classification performance measures
Diff between softclassval versions 0.5-20110804 dated 2011-08-12 and 0.5-20120202 dated 2012-02-02
More information about softclassval at CRAN
Description: Extension of sensitivity, specificity, positive and
negative predictive value to continuous predicted and reference
memberships in [0, 1]
Author: C. Beleites
Maintainer: C. Beleites
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softclassval-0.5-20120202/softclassval/R/init.R | 16
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softclassval-0.5-20120202/softclassval/R/nsamples.R | 3
softclassval-0.5-20120202/softclassval/R/operators.R | 116 ++++---
softclassval-0.5-20120202/softclassval/R/performance.R | 89 +++--
softclassval-0.5-20120202/softclassval/R/postproc.R | 2
softclassval-0.5-20120202/softclassval/R/softclassval.R | 59 ---
softclassval-0.5-20120202/softclassval/R/validate.R | 63 +++
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softclassval-0.5-20120202/softclassval/man/hard.Rd | 35 +-
softclassval-0.5-20120202/softclassval/man/hardclasses.Rd | 44 +-
softclassval-0.5-20120202/softclassval/man/nsamples.Rd | 43 +-
softclassval-0.5-20120202/softclassval/man/operators.Rd | 162 +++++-----
softclassval-0.5-20120202/softclassval/man/performance.Rd | 120 ++++---
softclassval-0.5-20120202/softclassval/man/postproc.Rd | 44 +-
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softclassval-0.5-20120202/softclassval/tests/tests.R | 1
29 files changed, 600 insertions(+), 388 deletions(-)
Path: /cran/updated | permanent link
Title: Fusing R and OpenBugs
Diff between rbugs versions 0.5-3 dated 2011-11-08 and 0.5-4 dated 2012-02-02
More information about rbugs at CRAN
Description: Functions to prepare files needed for running BUGS in
batch-mode, and running BUGS from R. Support for Linux and
Windows systems with OpenBugs is emphasized.
Author: Jun Yan
Maintainer: Marcos Prates
ChangeLog | 7 +++++++
DESCRIPTION | 13 +++++++------
MD5 | 6 +++---
R/rbugs.R | 2 +-
4 files changed, 18 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Title: Functions to generate fMRI data including activated data, noise
data and resting state data.
Diff between neuRosim versions 0.2-8 dated 2011-10-24 and 0.2-10 dated 2012-02-02
More information about neuRosim at CRAN
Description: The package allows users to generate fMRI time series or
4D data. Some high-level functions are created for fast data
generation with only a few arguments and a diversity of
functions to define activation and noise. For more advanced
users it is possible to use the low-level functions and
manipulate the arguments.
Author: Marijke Welvaert with contributions from Joke Durnez, Beatrijs
Moerkerke, Yves Rosseel and Geert Verdoolaege
Maintainer: Marijke Welvaert
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/simTSrestingstate.R | 2 +-
R/simVOLfmri.R | 16 ++++++++++++----
R/specifydesign.R | 1 +
man/neuRosim-package.Rd | 4 ++--
6 files changed, 25 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: Latent Variable Analysis
Diff between lavaan versions 0.4-11 dated 2011-12-21 and 0.4-12 dated 2012-02-02
More information about lavaan at CRAN
Description: Fit a variety of latent variable models, including
confirmatory factor analysis, structural equation modeling and
latent growth curve models.
Author: Yves Rosseel
Maintainer: Yves Rosseel
DESCRIPTION | 16 -
MD5 | 55 +++--
NAMESPACE | 6
R/00class.R | 1
R/02lavaanUser.R | 26 +-
R/03lavaanSample.R | 7
R/06lavaanEstimate.R | 38 ++-
R/07lavaanVcov.R | 44 ++--
R/08lavaanTest.R | 26 +-
R/09lavaanFit.R | 2
R/10lavaan-methods.R | 21 +-
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R/bootstrapLRT.R | 284 +++++++++++++++++------------
R/lavaan.R | 223 ++++++++++++++++++----
R/modification.R | 6
R/nlminb.constr.R | 2
R/objective.R | 12 +
R/prelis.R | 4
R/representation.LISREL.R | 21 +-
R/residuals.R | 20 +-
R/simulate.R | 166 ++++++++++++++++-
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R/utils-graphics.R |only
R/utils-user.R | 73 ++++---
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31 files changed, 1047 insertions(+), 500 deletions(-)
Path: /cran/updated | permanent link
Title: Forecasting functions for time series
Diff between forecast versions 3.16 dated 2011-12-24 and 3.17 dated 2012-02-02
More information about forecast at CRAN
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 6 +
DESCRIPTION | 17 ++--
MD5 | 13 +--
R/arima.R | 79 ++++++++++++++++----
R/lm.R | 5 +
R/newarima2.R | 208 ++++++++++++++++++++++++++++--------------------------
R/whichmodels.R |only
man/auto.arima.Rd | 6 +
8 files changed, 204 insertions(+), 130 deletions(-)
Path: /cran/updated | permanent link
More information about DiscreteLaplace at CRAN
Path: /cran/new | permanent link
Title: Convenience functions for arrays
Diff between arrayhelpers versions 0.75-20111128 dated 2011-11-29 and 0.75-20120202 dated 2012-02-02
More information about arrayhelpers at CRAN
Description: Some convenient functions to work with arrays
Author: C. Beleites
Maintainer: C. Beleites
DESCRIPTION | 12 ++++++------
MD5 | 16 +++++++++-------
NAMESPACE | 1 +
R/array2df.R | 1 +
R/colSums.R | 24 ++++++++++++------------
R/ndim.R | 2 ++
R/rowsum.R | 2 +-
R/slice.R |only
man/ndim.Rd | 5 +++++
man/slice.Rd |only
10 files changed, 37 insertions(+), 26 deletions(-)
Path: /cran/updated | permanent link
Title: Analysis of geostatistical data
Diff between geoR versions 1.7-1 dated 2011-11-11 and 1.7-2 dated 2012-02-02
More information about geoR at CRAN
Description: Geostatistical analysis including traditional,
likelihood-based and Bayesian methods.
Author: Paulo J. Ribeiro Jr
Maintainer: Paulo J. Ribeiro Jr
DESCRIPTION | 15 ++++++++-------
MD5 | 50 +++++++++++++++++++++++++-------------------------
NAMESPACE | 1 +
R/auxiliar.R | 4 +++-
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inst/CHANGES | 15 +++++++++++++--
26 files changed, 50 insertions(+), 35 deletions(-)
Path: /cran/updated | permanent link
Title: Exact Calculation of WMTR
Diff between WMTregions versions 3.1.0.2 dated 2011-11-02 and 3.2.4 dated 2012-02-02
More information about WMTregions at CRAN
Description: R realization of an exact algorithm for calculating the
weighted-mean trimmed regions
Author: Pavel Bazovkin
Maintainer: Pavel Bazovkin
WMTregions-3.1.0.2/WMTregions/R/WMTregions-internal.R |only
WMTregions-3.2.4/WMTregions/DESCRIPTION | 14 +--
WMTregions-3.2.4/WMTregions/MD5 | 30 +++----
WMTregions-3.2.4/WMTregions/NAMESPACE |only
WMTregions-3.2.4/WMTregions/R/WMTR.R | 2
WMTregions-3.2.4/WMTregions/R/showWMTR.R | 3
WMTregions-3.2.4/WMTregions/R/visualWMTR.R | 2
WMTregions-3.2.4/WMTregions/data |only
WMTregions-3.2.4/WMTregions/man/Indices_0809.Rd |only
WMTregions-3.2.4/WMTregions/man/WMTR.Rd | 6 -
WMTregions-3.2.4/WMTregions/man/WMTregions-package.Rd | 10 +-
WMTregions-3.2.4/WMTregions/man/generTRsample.Rd | 4
WMTregions-3.2.4/WMTregions/man/loadWMTR.Rd | 9 --
WMTregions-3.2.4/WMTregions/man/pointinTR.Rd | 8 -
WMTregions-3.2.4/WMTregions/man/showWMTR.Rd | 4
WMTregions-3.2.4/WMTregions/man/visualWMTR.Rd | 6 -
WMTregions-3.2.4/WMTregions/src/Agents.cpp | 75 ++++++++++--------
WMTregions-3.2.4/WMTregions/src/Objects.cpp | 40 ++++-----
18 files changed, 114 insertions(+), 99 deletions(-)
Path: /cran/updated | permanent link
Title: Parallel Computing Toolset for Genome-Wide Association Studies
(GWAS)
Diff between SNPRelate versions 0.9.1 dated 2011-08-13 and 0.9.2 dated 2012-02-02
More information about SNPRelate at CRAN
Description: A high-performance computing toolset for relatedness and
principal component analysis in GWAS
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
DESCRIPTION | 16
MD5 | 59
NAMESPACE |only
R/main.r | 355 +
data/hapmap.geno.RData |binary
inst/extdata/hapmap.geno.gds |binary
inst/extdata/plinkhapmap.bed |binary
inst/extdata/plinkhapmap.bim |10345 ++++++++++++++++++--------------------
inst/extdata/plinkhapmap.fam | 549 +-
man/SNPRelate-package.Rd | 9
man/snpgdsCreateGenoSet.Rd | 13
man/snpgdsExampleFileName.Rd | 4
man/snpgdsIBDMLE.Rd | 15
man/snpgdsIBDMLELogLik.Rd | 10
man/snpgdsIBDMoM.Rd | 1
man/snpgdsIBS.Rd | 13
man/snpgdsIBSNum.Rd | 1
man/snpgdsLDMat.Rd | 6
man/snpgdsLDpair.Rd | 6
man/snpgdsLDpruning.Rd | 15
man/snpgdsPCA.Rd | 10
man/snpgdsPCASNPLoading.Rd | 2
man/snpgdsPosition.Rd |only
man/snpgdsSummary.Rd |only
src/CoreArray.src/CoreGDSLink.hpp | 1
src/CoreArray.src/dGenGWAS.cpp | 219
src/CoreArray.src/dGenGWAS.hpp | 73
src/CoreArray.src/genIBD.cpp | 28
src/CoreArray.src/genIBS.cpp | 137
src/CoreArray.src/genLD.cpp | 20
src/CoreArray.src/genPCA.cpp | 448 -
src/main.cpp | 209
32 files changed, 6375 insertions(+), 6189 deletions(-)
Path: /cran/updated | permanent link
Title: Diverse basic statistical and graphical functions
Diff between RVAideMemoire versions 0.9-7 dated 2011-11-11 and 0.9-8 dated 2012-02-02
More information about RVAideMemoire at CRAN
Description: This package contains diverse more or less complicated
functions, written to simplify beginners' (but not only) life:
simplifications of existing functions, basic but not
implemented tests, easy-to-use tools... All functions are
presented in the French book 'Aide-memoire de statistique
appliquee a la biologie', written by the same author and
available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé
RVAideMemoire-0.9-7/RVAideMemoire/R/fisher.medtest.R |only
RVAideMemoire-0.9-7/RVAideMemoire/R/print.fisher.medtest.R |only
RVAideMemoire-0.9-7/RVAideMemoire/man/fisher.medtest.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/DESCRIPTION | 18
RVAideMemoire-0.9-8/RVAideMemoire/MD5 | 203 ++---
RVAideMemoire-0.9-8/RVAideMemoire/NAMESPACE | 16
RVAideMemoire-0.9-8/RVAideMemoire/R/adjust.esticon.R | 14
RVAideMemoire-0.9-8/RVAideMemoire/R/bootstrap.R | 16
RVAideMemoire-0.9-8/RVAideMemoire/R/chisq.exp.R | 18
RVAideMemoire-0.9-8/RVAideMemoire/R/chisq.multcomp.R | 24
RVAideMemoire-0.9-8/RVAideMemoire/R/chisq.theo.multcomp.R | 23
RVAideMemoire-0.9-8/RVAideMemoire/R/cochran.qtest.R | 68 -
RVAideMemoire-0.9-8/RVAideMemoire/R/cor.2comp.R | 60 -
RVAideMemoire-0.9-8/RVAideMemoire/R/cor.conf.R | 24
RVAideMemoire-0.9-8/RVAideMemoire/R/cor.multcomp.R | 86 +-
RVAideMemoire-0.9-8/RVAideMemoire/R/cox.resid.R | 6
RVAideMemoire-0.9-8/RVAideMemoire/R/cramer.coeff.R | 37
RVAideMemoire-0.9-8/RVAideMemoire/R/cv.R | 6
RVAideMemoire-0.9-8/RVAideMemoire/R/fisher.multcomp.R | 37
RVAideMemoire-0.9-8/RVAideMemoire/R/ind.contrib.R | 47 -
RVAideMemoire-0.9-8/RVAideMemoire/R/least.rect.R | 74 -
RVAideMemoire-0.9-8/RVAideMemoire/R/logis.fit.R | 14
RVAideMemoire-0.9-8/RVAideMemoire/R/lr.multcomp.R | 79 --
RVAideMemoire-0.9-8/RVAideMemoire/R/mod.R | 4
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.1way.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.2wayA.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.2wayB.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.2wayC.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.2wayD.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.bartlett.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.kruskal.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.t.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.var.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.wilcox.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/plotresid.R | 41 -
RVAideMemoire-0.9-8/RVAideMemoire/R/plotsurvivors.R | 28
RVAideMemoire-0.9-8/RVAideMemoire/R/print.adjust.esticon.R | 2
RVAideMemoire-0.9-8/RVAideMemoire/R/print.bootstrap.R | 3
RVAideMemoire-0.9-8/RVAideMemoire/R/print.chisq.exp.R | 4
RVAideMemoire-0.9-8/RVAideMemoire/R/print.chisq.multcomp.R | 5
RVAideMemoire-0.9-8/RVAideMemoire/R/print.chisq.theo.multcomp.R | 4
RVAideMemoire-0.9-8/RVAideMemoire/R/print.cochran.qtest.R | 10
RVAideMemoire-0.9-8/RVAideMemoire/R/print.cor.2comp.R | 6
RVAideMemoire-0.9-8/RVAideMemoire/R/print.cor.conf.R | 5
RVAideMemoire-0.9-8/RVAideMemoire/R/print.cor.multcomp.R | 14
RVAideMemoire-0.9-8/RVAideMemoire/R/print.cramer.coeff.R | 3
RVAideMemoire-0.9-8/RVAideMemoire/R/print.fisher.multcomp.R | 8
RVAideMemoire-0.9-8/RVAideMemoire/R/print.least.rect.R | 4
RVAideMemoire-0.9-8/RVAideMemoire/R/print.lr.multcomp.R | 8
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.anova.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.bartlett.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.kruskal.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.t.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.var.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.wilcox.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.prop.multcomp.R | 2
RVAideMemoire-0.9-8/RVAideMemoire/R/print.reg.intcomp.R | 6
RVAideMemoire-0.9-8/RVAideMemoire/R/print.reg.slpcomp.R | 8
RVAideMemoire-0.9-8/RVAideMemoire/R/print.spearman.ci.R | 4
RVAideMemoire-0.9-8/RVAideMemoire/R/print.surv.multcomp.R | 2
RVAideMemoire-0.9-8/RVAideMemoire/R/print.wilcox.paired.multcomp.R | 8
RVAideMemoire-0.9-8/RVAideMemoire/R/print.wilcox.signtest.R | 14
RVAideMemoire-0.9-8/RVAideMemoire/R/prop.multcomp.R | 20
RVAideMemoire-0.9-8/RVAideMemoire/R/psignif.R | 17
RVAideMemoire-0.9-8/RVAideMemoire/R/reg.ci.R | 32
RVAideMemoire-0.9-8/RVAideMemoire/R/reg.intcomp.R | 93 +-
RVAideMemoire-0.9-8/RVAideMemoire/R/reg.slpcomp.R | 65 -
RVAideMemoire-0.9-8/RVAideMemoire/R/scat.mix.categorical.R | 18
RVAideMemoire-0.9-8/RVAideMemoire/R/scat.mix.numeric.R | 6
RVAideMemoire-0.9-8/RVAideMemoire/R/se.R | 2
RVAideMemoire-0.9-8/RVAideMemoire/R/seq2.R | 2
RVAideMemoire-0.9-8/RVAideMemoire/R/spearman.ci.R | 29
RVAideMemoire-0.9-8/RVAideMemoire/R/surv.multcomp.R | 109 +-
RVAideMemoire-0.9-8/RVAideMemoire/R/wilcox.paired.multcomp.R | 53 -
RVAideMemoire-0.9-8/RVAideMemoire/R/wilcox.signtest.R | 42 -
RVAideMemoire-0.9-8/RVAideMemoire/R/zzz.R |only
RVAideMemoire-0.9-8/RVAideMemoire/RVAideMemoire-Ex.R | 381 ++++++----
RVAideMemoire-0.9-8/RVAideMemoire/man/RVAideMemoire-package.Rd | 6
RVAideMemoire-0.9-8/RVAideMemoire/man/adjust.esticon.Rd | 2
RVAideMemoire-0.9-8/RVAideMemoire/man/bootstrap.Rd | 2
RVAideMemoire-0.9-8/RVAideMemoire/man/chisq.exp.Rd | 12
RVAideMemoire-0.9-8/RVAideMemoire/man/chisq.multcomp.Rd | 10
RVAideMemoire-0.9-8/RVAideMemoire/man/chisq.theo.multcomp.Rd | 14
RVAideMemoire-0.9-8/RVAideMemoire/man/cochran.qtest.Rd | 21
RVAideMemoire-0.9-8/RVAideMemoire/man/cor.2comp.Rd | 16
RVAideMemoire-0.9-8/RVAideMemoire/man/cor.conf.Rd | 8
RVAideMemoire-0.9-8/RVAideMemoire/man/cor.multcomp.Rd | 32
RVAideMemoire-0.9-8/RVAideMemoire/man/cox.resid.Rd | 6
RVAideMemoire-0.9-8/RVAideMemoire/man/cramer.coeff.Rd | 8
RVAideMemoire-0.9-8/RVAideMemoire/man/fisher.multcomp.Rd | 12
RVAideMemoire-0.9-8/RVAideMemoire/man/ind.contrib.Rd | 8
RVAideMemoire-0.9-8/RVAideMemoire/man/least.rect.Rd | 14
RVAideMemoire-0.9-8/RVAideMemoire/man/logis.fit.Rd | 8
RVAideMemoire-0.9-8/RVAideMemoire/man/logis.noise.Rd | 10
RVAideMemoire-0.9-8/RVAideMemoire/man/lr.multcomp.Rd | 17
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.anova.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.bartlett.test.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.kruskal.test.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.t.test.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.var.test.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.wilcox.test.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/plotresid.Rd | 7
RVAideMemoire-0.9-8/RVAideMemoire/man/plotsurvivors.Rd | 5
RVAideMemoire-0.9-8/RVAideMemoire/man/print.bootstrap.Rd | 9
RVAideMemoire-0.9-8/RVAideMemoire/man/prop.multcomp.Rd | 14
RVAideMemoire-0.9-8/RVAideMemoire/man/psignif.Rd | 4
RVAideMemoire-0.9-8/RVAideMemoire/man/reg.ci.Rd | 8
RVAideMemoire-0.9-8/RVAideMemoire/man/reg.intcomp.Rd | 21
RVAideMemoire-0.9-8/RVAideMemoire/man/reg.slpcomp.Rd | 19
RVAideMemoire-0.9-8/RVAideMemoire/man/scat.mix.categorical.Rd | 22
RVAideMemoire-0.9-8/RVAideMemoire/man/scat.mix.numeric.Rd | 22
RVAideMemoire-0.9-8/RVAideMemoire/man/spearman.ci.Rd | 6
RVAideMemoire-0.9-8/RVAideMemoire/man/surv.multcomp.Rd | 27
RVAideMemoire-0.9-8/RVAideMemoire/man/wilcox.paired.multcomp.Rd | 47 -
RVAideMemoire-0.9-8/RVAideMemoire/man/wilcox.signtest.Rd | 13
116 files changed, 1242 insertions(+), 1120 deletions(-)
Path: /cran/updated | permanent link
Title: OCI based Oracle database interface for R
Diff between ROracle versions 0.5-12 dated 2011-09-15 and 1.1-1 dated 2012-02-02
More information about ROracle at CRAN
Description: Oracle database interface (DBI) driver for R. This is a
DBI-compliant Oracle driver based on the OCI.
Author: Denis Mukhin, David A. James and Jake Luciani
Maintainer: Denis Mukhin
ROracle-0.5-12/ROracle/R/OraSupport.R |only
ROracle-0.5-12/ROracle/R/Oracle.R |only
ROracle-0.5-12/ROracle/R/S4R.R |only
ROracle-0.5-12/ROracle/R/dbObjectId.R |only
ROracle-0.5-12/ROracle/configure.in |only
ROracle-0.5-12/ROracle/inst/INSTALL |only
ROracle-0.5-12/ROracle/inst/LGPL |only
ROracle-0.5-12/ROracle/inst/NEWS |only
ROracle-0.5-12/ROracle/inst/README |only
ROracle-0.5-12/ROracle/inst/README.Oracle9 |only
ROracle-0.5-12/ROracle/inst/README.client |only
ROracle-0.5-12/ROracle/inst/README.macOSX |only
ROracle-0.5-12/ROracle/inst/README.windows |only
ROracle-0.5-12/ROracle/inst/TODO |only
ROracle-0.5-12/ROracle/man/DBIPreparedStatement-class.Rd |only
ROracle-0.5-12/ROracle/man/OraObject-class.Rd |only
ROracle-0.5-12/ROracle/man/OraPreparedStatement-class.Rd |only
ROracle-0.5-12/ROracle/man/S4R.Rd |only
ROracle-0.5-12/ROracle/man/dbDataType-methods.Rd |only
ROracle-0.5-12/ROracle/man/dbListTables-methods.Rd |only
ROracle-0.5-12/ROracle/man/dbObjectId-class.Rd |only
ROracle-0.5-12/ROracle/man/dbPrepareStatement-methods.Rd |only
ROracle-0.5-12/ROracle/man/isIdCurrent.Rd |only
ROracle-0.5-12/ROracle/man/make.db.names-methods.Rd |only
ROracle-0.5-12/ROracle/man/oraParseConParams.Rd |only
ROracle-0.5-12/ROracle/man/oraSupport.Rd |only
ROracle-0.5-12/ROracle/man/safe.write.Rd |only
ROracle-0.5-12/ROracle/src/Makefile.in |only
ROracle-0.5-12/ROracle/src/Makefile.win |only
ROracle-0.5-12/ROracle/src/RS-DBI.c |only
ROracle-0.5-12/ROracle/src/RS-DBI.h |only
ROracle-0.5-12/ROracle/src/RS-Oracle.h |only
ROracle-0.5-12/ROracle/src/RS-Oracle.pc |only
ROracle-0.5-12/ROracle/src/S4R.h |only
ROracle-1.1-1/ROracle/DESCRIPTION | 28
ROracle-1.1-1/ROracle/INSTALL |only
ROracle-1.1-1/ROracle/MD5 | 87
ROracle-1.1-1/ROracle/NAMESPACE | 43
ROracle-1.1-1/ROracle/NEWS |only
ROracle-1.1-1/ROracle/R/dbi.R |only
ROracle-1.1-1/ROracle/R/oci.R |only
ROracle-1.1-1/ROracle/R/zzz.R | 31
ROracle-1.1-1/ROracle/cleanup |only
ROracle-1.1-1/ROracle/configure | 1647 ++-------------
ROracle-1.1-1/ROracle/configure.ac |only
ROracle-1.1-1/ROracle/configure.win |only
ROracle-1.1-1/ROracle/inst/Copyrights | 7
ROracle-1.1-1/ROracle/inst/THANKS | 11
ROracle-1.1-1/ROracle/man/OraConnection-class.Rd | 38
ROracle-1.1-1/ROracle/man/OraDriver-class.Rd | 21
ROracle-1.1-1/ROracle/man/OraResult-class.Rd | 32
ROracle-1.1-1/ROracle/man/Oracle.Rd | 221 --
ROracle-1.1-1/ROracle/man/dbCallProc-methods.Rd | 7
ROracle-1.1-1/ROracle/man/dbCommit-methods.Rd | 19
ROracle-1.1-1/ROracle/man/dbConnect-methods.Rd | 59
ROracle-1.1-1/ROracle/man/dbDriver-methods.Rd | 27
ROracle-1.1-1/ROracle/man/dbGetInfo-methods.Rd | 34
ROracle-1.1-1/ROracle/man/dbListConnections-methods.Rd |only
ROracle-1.1-1/ROracle/man/dbReadTable-methods.Rd | 125 -
ROracle-1.1-1/ROracle/man/dbSendQuery-methods.Rd | 19
ROracle-1.1-1/ROracle/man/dbSetDataMappings-methods.Rd | 13
ROracle-1.1-1/ROracle/man/fetch-methods.Rd | 29
ROracle-1.1-1/ROracle/man/summary-methods.Rd | 30
ROracle-1.1-1/ROracle/src/Makevars.in | 4
ROracle-1.1-1/ROracle/src/Makevars.win |only
ROracle-1.1-1/ROracle/src/oci |only
ROracle-1.1-1/ROracle/src/roci.c |only
67 files changed, 622 insertions(+), 1910 deletions(-)
Path: /cran/updated | permanent link
Title: R interface to RNG with multiple streams
Diff between rlecuyer versions 0.3-2 dated 2012-01-26 and 0.3-3 dated 2012-02-02
More information about rlecuyer at CRAN
Description: Provides an interface to the C implementation of the
random number generator with multiple independent streams
developed by L'Ecuyer et al (2002). The main purpose of this
package is to enable the use of this random number generator in
parallel R applications.
Author: Hana Sevcikova
Maintainer: Hana Sevcikova
ChangeLog | 7 +++++--
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/zzz.R | 4 ++--
4 files changed, 14 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
Title: Fisher-Wright Population Simulation
Diff between fwsim versions 0.1-2 dated 2012-01-30 and 0.2-1 dated 2012-02-02
More information about fwsim at CRAN
Description: Simulates a population under the Fisher-Wright model with
a stepwise neutral mutation process. The population sizes are
random Poisson distributed and different kinds of population
growth are supported. It is possible to specify locus and
direction (in terms of upwards and downwards mutation rate)
specific mutation rate.
Author: Mikkel Meyer Andersen and Poul Svante Eriksen
Maintainer: Mikkel Meyer Andersen
DESCRIPTION | 17 +++--
MD5 | 29 +++++----
NEWS |only
R/fwsim.R | 33 +++++++++-
man/fwsim.Rd | 44 ++++++++------
src/clean.c | 3
src/common.h | 10 +++
src/fwsim.c | 174 ++++++++++++++++++++++++++++++++++++++-------------------
src/fwsim.h | 5 +
src/kdtree.c | 11 ++-
src/kdtree.h | 2
src/mutation.c |only
src/mutation.h |only
src/print.c | 92 ++++++++++++++++++++++++++++++
src/print.h | 4 +
src/sim.c | 173 ++++++++++++++++++++++++++++++++++++++------------------
src/sim.h | 4 -
17 files changed, 443 insertions(+), 158 deletions(-)
Path: /cran/updated | permanent link
Title: An R package for the analysis of epidemiological data
Diff between epiR versions 0.9-36 dated 2012-01-24 and 0.9-38 dated 2012-02-02
More information about epiR at CRAN
Description: An R package for the analysis of epidemiological data.
Contains functions for directly and indirectly adjusting
measures of disease frequency, quantifying measures of
association on the basis of single or multiple strata of count
data presented in a contingency table, and computing confidence
intervals around incidence risk and incidence rate estimates.
Miscellaneous functions for use in meta-analysis, diagnostic
test interpretation, and sample size calculations.
Author: Mark Stevenson
Maintainer: Mark Stevenson
epiR-0.9-36/epiR/R/epi.2by2.R |only
epiR-0.9-38/epiR/DESCRIPTION | 29 +++++++++++++-------------
epiR-0.9-38/epiR/MD5 | 18 ++++++++--------
epiR-0.9-38/epiR/R/epi.2by2.r |only
epiR-0.9-38/epiR/R/epi.about.R | 8 +++++--
epiR-0.9-38/epiR/R/epi.conf.R | 6 ++---
epiR-0.9-38/epiR/doc/epiR.pdf |binary
epiR-0.9-38/epiR/man/epi.2by2.Rd | 39 +++++++++++++++++++++---------------
epiR-0.9-38/epiR/man/epi.about.Rd | 2 -
epiR-0.9-38/epiR/man/epi.bohning.Rd | 2 -
epiR-0.9-38/epiR/man/epi.conf.Rd | 19 +++++++++++++----
11 files changed, 73 insertions(+), 50 deletions(-)
Path: /cran/updated | permanent link
More information about DandEFA at CRAN
Path: /cran/new | permanent link
Title: Seismic Hypocenter Determination
Diff between Rquake versions 1.2-2 dated 2012-01-25 and 1.3-2 dated 2012-02-01
More information about Rquake at CRAN
Description: Rquake is a package for analaysis of seismic data
collected continuously, or in trigger mode. The functions
organize other functions from RSEIS and GEOmap to help
researchers pick, locate, and store hypocenters for detailed
seismic investigation.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 6 ++--
MD5 | 37 ++++++++++++++++++++---------
R/EQXYresid.R | 4 ++-
R/Gfirstguess.R |only
R/Klocate.R |only
R/NLSlocate.R | 4 ++-
R/PCfiledatetime.R |only
R/PCsaveWPX.R |only
R/PFoutput.R | 2 -
R/RQ.R | 33 +++++++++++++++++++++-----
R/SaveCSV.R |only
R/SavePF.R | 2 -
R/Y2Pphase.R | 10 ++++----
R/defaultVEL.R |only
R/gMAP.R | 4 +--
R/latlonz2wpx.R |only
R/viewCHAC.R | 18 +++++++++++---
man/Gfirstguess.Rd |only
man/Klocate.Rd |only
man/PCfiledatetime.Rd |only
man/PCsaveWPX.Rd |only
man/Y2Pphase.Rd | 17 ++++++++-----
man/clusterWPX.Rd | 2 -
man/defaultVEL.Rd |only
man/latlonz2wpx.Rd |only
man/viewCHAC.Rd | 62 +++++++++++++++++++++++++++++++++++++++++++++-----
26 files changed, 152 insertions(+), 49 deletions(-)
Path: /cran/updated | permanent link
Title: Parametric linkage analysis in R
Diff between paramlink versions 0.3-1 dated 2011-10-15 and 0.6-1 dated 2012-02-01
More information about paramlink at CRAN
Description: Parametric linkage analysis and other likelihood-based
pedigree analyses based on the Elston-Stewart algorithm,
including singlepoint LOD scores, power analysis and various
marker genotype distributions. Multipoint analysis is provided
through a convenient MERLIN wrapper. Includes many utility
functions for creating, manipulating and plotting pedigrees,
markers and linkage results.
Author: Magnus Dehli Vigeland
Maintainer: Magnus Dehli Vigeland
paramlink-0.3-1/paramlink/R/genoDistr.R |only
paramlink-0.3-1/paramlink/R/read.linkdat.R |only
paramlink-0.3-1/paramlink/man/genoDistr.Rd |only
paramlink-0.3-1/paramlink/man/read.linkdat.Rd |only
paramlink-0.3-1/paramlink/man/setSim.Rd |only
paramlink-0.6-1/paramlink/ChangeLog.txt |only
paramlink-0.6-1/paramlink/DESCRIPTION | 26 -
paramlink-0.6-1/paramlink/MD5 | 92 ++-
paramlink-0.6-1/paramlink/NAMESPACE | 2
paramlink-0.6-1/paramlink/R/SNPsim.R | 107 ++--
paramlink-0.6-1/paramlink/R/SNPsim2.R |only
paramlink-0.6-1/paramlink/R/as.data.frame.linkdat.R | 52 +-
paramlink-0.6-1/paramlink/R/createPedigree.R | 14
paramlink-0.6-1/paramlink/R/likelihood.R | 98 +++-
paramlink-0.6-1/paramlink/R/linkage.power.R | 31 -
paramlink-0.6-1/paramlink/R/linkdat.R | 138 +----
paramlink-0.6-1/paramlink/R/linkdat.utils.R | 120 +++-
paramlink-0.6-1/paramlink/R/linkres.R | 64 ++
paramlink-0.6-1/paramlink/R/lod.R | 60 +-
paramlink-0.6-1/paramlink/R/markers.R | 413 ++++++++++++-----
paramlink-0.6-1/paramlink/R/merlin.R |only
paramlink-0.6-1/paramlink/R/modify.R | 175 +++----
paramlink-0.6-1/paramlink/R/multiallel.R |only
paramlink-0.6-1/paramlink/R/oneMarkerDistribution.R |only
paramlink-0.6-1/paramlink/R/plot.linkdat.R | 78 +--
paramlink-0.6-1/paramlink/R/print.linkdat.R | 48 +
paramlink-0.6-1/paramlink/R/setMap.R |only
paramlink-0.6-1/paramlink/R/setModel.R | 20
paramlink-0.6-1/paramlink/R/subset.linkdat.R | 21
paramlink-0.6-1/paramlink/R/twoMarkerDistribution.R |only
paramlink-0.6-1/paramlink/R/write.linkdat.R | 49 +-
paramlink-0.6-1/paramlink/data/Xped.rda |binary
paramlink-0.6-1/paramlink/data/dominant.rda |binary
paramlink-0.6-1/paramlink/data/toyped.rda |binary
paramlink-0.6-1/paramlink/data/twoloops.rda |only
paramlink-0.6-1/paramlink/inst |only
paramlink-0.6-1/paramlink/man/SNPsim.Rd | 22
paramlink-0.6-1/paramlink/man/Xped.Rd | 5
paramlink-0.6-1/paramlink/man/createPedigree.Rd | 27 -
paramlink-0.6-1/paramlink/man/dominant.Rd | 6
paramlink-0.6-1/paramlink/man/genotypeDistribution.Rd |only
paramlink-0.6-1/paramlink/man/likelihood.Rd | 17
paramlink-0.6-1/paramlink/man/linkage.power.Rd | 39 -
paramlink-0.6-1/paramlink/man/linkdat.Rd | 127 +++--
paramlink-0.6-1/paramlink/man/linkdat.utils.Rd | 46 +
paramlink-0.6-1/paramlink/man/linkres.Rd | 22
paramlink-0.6-1/paramlink/man/lod.Rd | 58 +-
paramlink-0.6-1/paramlink/man/markers.Rd | 91 ++-
paramlink-0.6-1/paramlink/man/merlin.Rd |only
paramlink-0.6-1/paramlink/man/modify.Rd | 38 +
paramlink-0.6-1/paramlink/man/plot.linkdat.Rd | 28 -
paramlink-0.6-1/paramlink/man/randomPed.Rd | 2
paramlink-0.6-1/paramlink/man/setAvailable.Rd |only
paramlink-0.6-1/paramlink/man/toyped.Rd | 3
paramlink-0.6-1/paramlink/man/twoMarkerDistribution.Rd |only
paramlink-0.6-1/paramlink/man/twoloops.Rd |only
56 files changed, 1389 insertions(+), 750 deletions(-)
Path: /cran/updated | permanent link
Title: bild: a package for BInary Longitudinal Data
Diff between bild versions 1.0-3 dated 2012-01-28 and 1.0-4 dated 2012-02-01
More information about bild at CRAN
Description: bild performs logistic regression for binary longitudinal
data, allowing for serial dependence among observations from a
given individual and a random intercept term. Estimation is via
maximization of the exact likelihood of a suitably defined
model. Missing values and unbalanced data are allowed, with
some restrictions.
Author: M. Helena Gonçalves, M. Salomé Cabral and Adelchi Azzalini,
apart from a set of Fortran-77 subroutines written by R.
Piessens and E. de Doncker, belonging to the suite "Quadpack"
Maintainer: M. Helena Gonçalves
DESCRIPTION | 8 ++--
MD5 | 10 ++---
history.txt | 27 +++++++++-----
inst/CITATION | 99 +++++++++++++++++++++++++---------------------------
man/bild-package.Rd | 4 +-
man/bild.Rd | 4 +-
6 files changed, 80 insertions(+), 72 deletions(-)
Path: /cran/updated | permanent link
Title: GUI Tool for Data Management like SPSS or Stata
Diff between Rz versions 0.3-3 dated 2012-01-31 and 0.3-6 dated 2012-02-01
More information about Rz at CRAN
Description: R is very powerfull but not enough for social science
becouse of lack in some functionality for managing survey data
SPSS or Stata provides. Memisc package supplements these,
variable labels, value labels, definable missing values and so
on, but to efficiently work these functions need graphical
interface to overlook data. This package provides such
graphical interface similar to SPSS's Variable View and data
managing system using memisc package as backend. Additionally,
Rz has powerful plot assistant interface based on ggplot2.
Author: Masahiro Hayashi
Maintainer: Masahiro Hayashi
DESCRIPTION | 8 -
MD5 | 16 +-
NEWS | 49 +++---
R/RzActionGroup.R | 134 +++++++++---------
R/RzDataView.R | 25 +++
R/RzMenu.R | 2
R/RzSettings.R | 381 ++++++++++++++++++++++++++++--------------------------
R/zzz.R | 11 -
misc.R | 377 ++++++++++++++++++++++++++---------------------------
9 files changed, 527 insertions(+), 476 deletions(-)
Path: /cran/updated | permanent link
Title: Interface between GRASS 6+ geographical information system and R
Diff between spgrass6 versions 0.7-4 dated 2011-09-16 and 0.7-8 dated 2012-02-01
More information about spgrass6 at CRAN
Description: Interpreted interface between GRASS 6+ geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 515 ++++++++++++++++++++++++++++++++--------------
DESCRIPTION | 11
MD5 | 26 +-
NAMESPACE | 2
R/AAA.R | 2
R/bin_link.R | 325 +++++++++++++++++++----------
R/options.R | 31 +-
R/vect_link.R | 16 -
R/xml1.R | 4
inst/ChangeLog | 515 ++++++++++++++++++++++++++++++++--------------
inst/doc/spgrass6_0.3.pdf |binary
man/readRAST6.Rd | 49 ++--
man/readVECT6.Rd | 1
man/spgrass6.Rd | 1
14 files changed, 1012 insertions(+), 486 deletions(-)
Path: /cran/updated | permanent link
More information about Interpol.T at CRAN
Path: /cran/new | permanent link
Title: classes and methods for spatial data
Diff between sp versions 0.9-93 dated 2011-12-21 and 0.9-94 dated 2012-02-01
More information about sp at CRAN
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
Author: Edzer Pebesma
Maintainer: Edzer Pebesma
sp-0.9-93/sp/ChangeLog |only
sp-0.9-94/sp/DESCRIPTION | 20 +++--
sp-0.9-94/sp/MD5 | 41 +++++-------
sp-0.9-94/sp/R/Class-SpatialGrid.R | 27 ++-----
sp-0.9-94/sp/R/Class-SpatialGridDataFrame.R | 6 -
sp-0.9-94/sp/R/SpatialGrid-methods.R | 44 +++++++-----
sp-0.9-94/sp/R/SpatialGridDataFrame-methods.R | 17 ++---
sp-0.9-94/sp/R/gridded.R | 63 ++++--------------
sp-0.9-94/sp/R/image.R | 3
sp-0.9-94/sp/R/over.R | 15 ++++
sp-0.9-94/sp/R/overlay.R | 13 +++
sp-0.9-94/sp/inst/ChangeLog | 85 +++++++++++++++++++++++++
sp-0.9-94/sp/inst/doc/over.pdf |binary
sp-0.9-94/sp/inst/doc/sp.pdf |binary
sp-0.9-94/sp/inst/external/.RData |only
sp-0.9-94/sp/man/00sp.Rd | 4 -
sp-0.9-94/sp/man/SpatialGrid-class.Rd | 3
sp-0.9-94/sp/man/SpatialGridDataFrame-class.Rd | 4 -
sp-0.9-94/sp/man/over.Rd | 10 ++
sp-0.9-94/sp/man/overlay-methods.Rd | 4 +
sp-0.9-94/sp/tests/fail1.R | 11 +++
sp-0.9-94/sp/tests/fail1.Rout.save | 13 +++
sp-0.9-94/sp/tests/grid.Rout.save | 5 -
23 files changed, 244 insertions(+), 144 deletions(-)
Path: /cran/updated | permanent link
Title: Automatic Text Classification via Supervised Learning
Diff between RTextTools versions 1.3.5 dated 2012-01-16 and 1.3.6 dated 2012-02-01
More information about RTextTools at CRAN
Description: RTextTools is a machine learning package for automatic
text classification that makes it simple for novice users to
get started with machine learning, while allowing experienced
users to easily experiment with different settings and
algorithm combinations. The package includes nine algorithms
for ensemble classification (svm, slda, boosting, bagging,
random forests, glmnet, decision trees, neural networks,
maximum entropy), comprehensive analytics, and thorough
documentation.
Author: Timothy P. Jurka, Loren Collingwood, Amber E. Boydstun,
Emiliano Grossman, Wouter van Atteveldt
Maintainer: Timothy P. Jurka
ChangeLog | 8 ++++++++
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/create_matrix.R | 13 +++++++++----
man/create_matrix.Rd | 17 ++++++++++++-----
5 files changed, 37 insertions(+), 17 deletions(-)
Path: /cran/updated | permanent link
Title: Ridge regression and other kernels for genomic selection
Diff between rrBLUP versions 3.2 dated 2012-01-24 and 3.3 dated 2012-02-01
More information about rrBLUP at CRAN
Description: One application is to estimate marker effects by ridge
regression; alternatively, BLUPs can be calculated based on
kinship. The genetic covariance between lines can be modeled
using a marker-based, additive relationship matrix, or via
Gaussian and exponential kernels.
Author: Jeffrey Endelman
Maintainer: Jeffrey Endelman
rrBLUP-3.2/rrBLUP/R/impute.R |only
rrBLUP-3.2/rrBLUP/man/impute.Rd |only
rrBLUP-3.3/rrBLUP/DESCRIPTION | 9 +-
rrBLUP-3.3/rrBLUP/MD5 | 16 +---
rrBLUP-3.3/rrBLUP/NAMESPACE | 2
rrBLUP-3.3/rrBLUP/NEWS | 5 +
rrBLUP-3.3/rrBLUP/R/A.mat.R | 118 ++++++++++++++++++++++----------
rrBLUP-3.3/rrBLUP/man/A.mat.Rd | 18 ++--
rrBLUP-3.3/rrBLUP/man/GWA.Rd | 5 -
rrBLUP-3.3/rrBLUP/man/rrBLUP-package.Rd | 6 -
10 files changed, 115 insertions(+), 64 deletions(-)
Path: /cran/updated | permanent link
More information about RCALI at CRAN
Path: /cran/new | permanent link
Title: Functional time series analysis
Diff between ftsa versions 3.0 dated 2012-01-20 and 3.1 dated 2012-02-01
More information about ftsa at CRAN
Description: Functions for functional time series
Author: Rob J Hyndman and Han Lin Shang
Maintainer: Han Lin Shang
CHANGELOG | 4 ++++
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/mase.R | 25 +++++++++++++------------
R/mdase.R | 25 +++++++++++++------------
R/rmsse.R | 26 ++++++++++++++------------
6 files changed, 53 insertions(+), 45 deletions(-)
Path: /cran/updated | permanent link
More information about FactoClass at CRAN
Path: /cran/new | permanent link
More information about ExomeDepth at CRAN
Path: /cran/new | permanent link
More information about TPAM at CRAN
Path: /cran/new | permanent link
Title: R interface to the UNU.RAN random variate generators
Diff between Runuran versions 0.18.0 dated 2011-05-19 and 0.19.0 dated 2012-01-31
More information about Runuran at CRAN
Description: Interface to the UNU.RAN library for Universal Non-Uniform
RANdom variate generators. Thus it allows to build non-uniform
random number generators from quite arbitrary distributions. In
particular, it provides an algorithm for fast numerical
inversion for distribution with given density function. In
addition, the package contains densities, distribution
functions and quantiles from a couple of distributions.
Author: Josef Leydold and Wolfgang H\"ormann
Maintainer: Josef Leydold
Runuran-0.18.0/Runuran/inst/doc/src |only
Runuran-0.18.0/Runuran/src/unuran-src/specfunct/cephes_source.h |only
Runuran-0.19.0/Runuran/DESCRIPTION | 13
Runuran-0.19.0/Runuran/MD5 |only
Runuran-0.19.0/Runuran/NEWS | 24
Runuran-0.19.0/Runuran/R/Runuran.R | 4
Runuran-0.19.0/Runuran/R/distributions.R | 30
Runuran-0.19.0/Runuran/configure | 477 +++++-----
Runuran-0.19.0/Runuran/configure.ac | 5
Runuran-0.19.0/Runuran/inst/doc/Runuran.Rnw | 18
Runuran-0.19.0/Runuran/inst/doc/Runuran.pdf |binary
Runuran-0.19.0/Runuran/inst/doc/inputs |only
Runuran-0.19.0/Runuran/inst/include |only
Runuran-0.19.0/Runuran/man/Runuran-package.Rd | 4
Runuran-0.19.0/Runuran/man/Runuran.distributions.Rd | 4
Runuran-0.19.0/Runuran/man/ud.Rd | 25
Runuran-0.19.0/Runuran/man/udgig.Rd | 34
Runuran-0.19.0/Runuran/man/udmeixner.Rd |only
Runuran-0.19.0/Runuran/man/udvg.Rd |only
Runuran-0.19.0/Runuran/man/up.Rd | 34
Runuran-0.19.0/Runuran/scripts |only
Runuran-0.19.0/Runuran/src/Makevars.in | 4
Runuran-0.19.0/Runuran/src/Runuran.c | 64 -
Runuran-0.19.0/Runuran/src/Runuran.h | 2
Runuran-0.19.0/Runuran/src/Runuran_ext.c |only
Runuran-0.19.0/Runuran/src/Runuran_ext.h |only
Runuran-0.19.0/Runuran/src/Runuran_pinv.c | 1
Runuran-0.19.0/Runuran/src/config.h.in | 8
Runuran-0.19.0/Runuran/src/config.w32 | 12
Runuran-0.19.0/Runuran/src/distributions.c | 8
Runuran-0.19.0/Runuran/src/performance.c | 41
Runuran-0.19.0/Runuran/src/unuran-src/distr/cemp.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/cemp.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/condi.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/condi.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/cont.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/cont.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/corder.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distr/corder.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/cvec.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/cvec.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/cvemp.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/cvemp.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/cxtrans.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/cxtrans.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/deprecated_distr.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/discr.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/discr.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/distr.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/distr.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/distr_info.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/distr_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/distr_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/matr.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distr/matr.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_F.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_beta.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_beta_gen.c | 119 +-
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_burr.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_cauchy.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_chi.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_chi_gen.c | 12
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_chisquare.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_exponential.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_exponential_gen.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_extremeI.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_extremeII.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_gamma.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_gamma_gen.c | 28
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_ghyp.c | 82 +
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_gig.c | 48 -
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_gig2.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_gig_gen.c | 14
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_hyperbolic.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_ig.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_laplace.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_logistic.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_lognormal.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_lomax.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_meixner.c |only
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_normal.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_normal_gen.c | 20
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_pareto.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_powerexponential.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_powerexponential_gen.c | 12
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_rayleigh.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_slash.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_slash_gen.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_student.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_student_gen.c | 12
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_triangular.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_uniform.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_vg.c |only
Runuran-0.19.0/Runuran/src/unuran-src/distributions/c_weibull.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_binomial.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_binomial_gen.c | 40
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_geometric.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_hypergeometric.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_hypergeometric_gen.c | 23
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_logarithmic.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_logarithmic_gen.c | 17
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_negativebinomial.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_poisson.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_poisson_gen.c | 55 -
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_zipf.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/d_zipf_gen.c | 12
Runuran-0.19.0/Runuran/src/unuran-src/distributions/m_correlation.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/unur_distributions.h | 4
Runuran-0.19.0/Runuran/src/unuran-src/distributions/unur_distributions_source.h | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/unur_stddistr.h | 4
Runuran-0.19.0/Runuran/src/unuran-src/distributions/vc_copula.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distributions/vc_multicauchy.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/vc_multiexponential.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/vc_multinormal.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/distributions/vc_multinormal_gen.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/distributions/vc_multistudent.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/methods/arou.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/arou.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/arou_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ars.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ars.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ars_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/auto.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/auto_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/cext.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/cext_struct.h | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/cstd.h | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/dari.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/dau.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/dau_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/deprecated_methods.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/deprecated_tdrgw.h | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/dext.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/dss.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/dstd_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/empk.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/empk_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/empl.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/empl_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/gibbs.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/hinv_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/hist.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/hitro.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/hitro_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/hrb.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/hrb.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/hrb_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/hrd.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/hrd_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/hri.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/hri_struct.h | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/itdr_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/mcorr.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/mcorr_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/mixt.c | 4
Runuran-0.19.0/Runuran/src/unuran-src/methods/mixt.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/mixt_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/mvstd.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/mvstd_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/mvtdr.c | 3
Runuran-0.19.0/Runuran/src/unuran-src/methods/mvtdr.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/mvtdr_debug.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/mvtdr_info.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/mvtdr_init.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/mvtdr_newset.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/mvtdr_sample.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/mvtdr_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ninv.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ninv.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ninv_debug.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ninv_info.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ninv_init.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ninv_newset.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ninv_newton.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ninv_regula.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ninv_sample.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ninv_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/norta.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/norta.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/norta_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/nrou.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/nrou.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/nrou_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/pinv.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/pinv.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/pinv_debug.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/pinv_info.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/pinv_init.ch | 21
Runuran-0.19.0/Runuran/src/unuran-src/methods/pinv_newset.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/pinv_newton.ch | 4
Runuran-0.19.0/Runuran/src/unuran-src/methods/pinv_prep.ch | 17
Runuran-0.19.0/Runuran/src/unuran-src/methods/pinv_sample.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/pinv_struct.h | 3
Runuran-0.19.0/Runuran/src/unuran-src/methods/srou.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/srou_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ssr.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ssr.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/ssr_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tabl.c | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/tabl_debug.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tabl_info.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tabl_init.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tabl_newset.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tabl_sample.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tabl_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_debug.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_gw_debug.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_gw_init.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_gw_sample.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_ia_sample.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_info.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_init.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_newset.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_ps_debug.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_ps_init.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_ps_sample.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_sample.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/tdr_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/unif.c | 12
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Runuran-0.19.0/Runuran/src/unuran-src/methods/unif_struct.h | 2
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Runuran-0.19.0/Runuran/src/unuran-src/methods/utdr.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/utdr.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/utdr_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/vempk.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/vempk.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/vempk_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/vnrou.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/vnrou.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/vnrou_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/x_gen.c | 20
Runuran-0.19.0/Runuran/src/unuran-src/methods/x_gen.h | 4
Runuran-0.19.0/Runuran/src/unuran-src/methods/x_gen_source.h | 3
Runuran-0.19.0/Runuran/src/unuran-src/methods/x_gen_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_debug.ch | 2
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Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_parser.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_scanner.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_stringgen.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_symbols.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/parser.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/parser.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/parser_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/stringparser.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/stringparser_lists.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/specfunct/bessel_asympt.c |only
Runuran-0.19.0/Runuran/src/unuran-src/specfunct/cgamma.c |only
Runuran-0.19.0/Runuran/src/unuran-src/specfunct/hypot.c |only
Runuran-0.19.0/Runuran/src/unuran-src/specfunct/log1p.c |only
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Runuran-0.19.0/Runuran/src/unuran-src/tests/countpdf.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/tests/counturn.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/tests/inverror.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/tests/unuran_tests.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_builtin.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_fvoid.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_gsl.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_gslqrng.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_prng.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_randomshift.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_rngstreams.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/unur_cookies.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/unur_source.h | 6
Runuran-0.19.0/Runuran/src/unuran-src/unur_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/unur_typedefs.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/unuran.h | 61 +
Runuran-0.19.0/Runuran/src/unuran-src/unuran.h.in | 9
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng_default.c | 6
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng_set.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng_unuran.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/debug.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/debug.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/debug_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/eigensystem.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/error.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/error.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/error_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/fmax.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/fmax_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/hooke.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/hooke_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/lobatto.c | 35
Runuran-0.19.0/Runuran/src/unuran-src/utils/lobatto_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/lobatto_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/matrix.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/matrix_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/mrou_rectangle.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/mrou_rectangle_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/mrou_rectangle_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/slist.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/slist.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/slist_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/stream.c | 10
Runuran-0.19.0/Runuran/src/unuran-src/utils/stream.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/stream_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/string.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/string_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/string_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/umalloc.c | 13
Runuran-0.19.0/Runuran/src/unuran-src/utils/umalloc_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/umath.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/umath.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/umath_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/unur_errno.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/unur_fp.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/unur_fp_const_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/unur_fp_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/unur_math_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/vector.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/vector_source.h | 2
Runuran-0.19.0/Runuran/src/verify.c | 6
Runuran-0.19.0/Runuran/tests/test_ud.R | 5
Runuran-0.19.0/Runuran/tests/test_unuran.R | 17
364 files changed, 1419 insertions(+), 913 deletions(-)
Path: /cran/updated | permanent link
Title: Methods to convert R data to YAML and back
Diff between yaml versions 2.1.2 dated 2012-01-17 and 2.1.3 dated 2012-01-31
More information about yaml at CRAN
Description: This package implements the libyaml YAML parser and
emitter (http://pyyaml.org/wiki/LibYAML) for R.
Author: Jeremy Stephens
Maintainer: Jeremy Stephens
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
src/r-ext.c | 14 ++++++++++++--
src/r-ext.h | 1 +
tests/as_yaml_test.R | 2 +-
5 files changed, 22 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
Title: Segmented relationships in regression models
Diff between segmented versions 0.2-8.3 dated 2012-01-16 and 0.2-8.4 dated 2012-01-31
More information about segmented at CRAN
Description: Given a (generalized) linear model, segmented `updates'
the model by adding one or more segmented relationships.
Several variables with multiple breakpoints are allowed.
Author: Vito M.R. Muggeo
Maintainer: Vito M.R. Muggeo
DESCRIPTION | 8 +-
MD5 | 36 +++++------
NAMESPACE | 3
NEWS | 6 +
R/broken.line.R | 76 +++++++++++-------------
R/davies.test.r | 6 -
R/intercept.r | 136 +++++++++++++++++++++-----------------------
R/plot.segmented.R | 2
R/print.summary.segmented.R | 4 -
R/seg.glm.fit.r | 7 +-
R/seg.lm.fit.r | 2
R/segmented.glm.R | 10 ++-
R/vcov.segmented.R | 6 -
data/down.rda |binary
data/plant.rda |binary
data/stagnant.rda |binary
man/intercept.Rd | 5 +
man/segmented-package.Rd | 4 -
man/summary.segmented.Rd | 7 ++
19 files changed, 168 insertions(+), 150 deletions(-)
Path: /cran/updated | permanent link
More information about readMLData at CRAN
Path: /cran/new | permanent link
Title: Multi-model inference
Diff between MuMIn versions 1.7.0 dated 2012-01-25 and 1.7.2 dated 2012-01-31
More information about MuMIn at CRAN
Description: Model selection and model averaging based on information
criteria (AICc and alike).
Author: Kamil BartoÅ
Maintainer: Kamil BartoÅ
MuMIn-1.7.0/MuMIn/inst/doc |only
MuMIn-1.7.2/MuMIn/DESCRIPTION | 11 -
MuMIn-1.7.2/MuMIn/MD5 | 68 ++++---
MuMIn-1.7.2/MuMIn/NAMESPACE | 14 +
MuMIn-1.7.2/MuMIn/NEWS | 34 ++-
MuMIn-1.7.2/MuMIn/R/AICc.R | 1
MuMIn-1.7.2/MuMIn/R/QAIC.R | 9 -
MuMIn-1.7.2/MuMIn/R/class-unmarkedFit.R | 30 +--
MuMIn-1.7.2/MuMIn/R/coefTable.R | 5
MuMIn-1.7.2/MuMIn/R/dredge.R | 249 +++++------------------------
MuMIn-1.7.2/MuMIn/R/ext.R | 66 +++++++
MuMIn-1.7.2/MuMIn/R/getAllTerms.R | 11 -
MuMIn-1.7.2/MuMIn/R/init.R | 10 -
MuMIn-1.7.2/MuMIn/R/makeArgs.R | 48 +++--
MuMIn-1.7.2/MuMIn/R/misc-utils.R | 15 -
MuMIn-1.7.2/MuMIn/R/model-utils.R | 146 ++++++++---------
MuMIn-1.7.2/MuMIn/R/model.avg.R | 100 +++--------
MuMIn-1.7.2/MuMIn/R/model.selection.R |only
MuMIn-1.7.2/MuMIn/R/pdredge.R | 21 +-
MuMIn-1.7.2/MuMIn/R/r.squared.R | 48 +----
MuMIn-1.7.2/MuMIn/demo/dredge.distsamp.R | 83 ++++-----
MuMIn-1.7.2/MuMIn/demo/pdredge.pcount.R | 130 +++++++--------
MuMIn-1.7.2/MuMIn/inst/TODO | 3
MuMIn-1.7.2/MuMIn/man/AICc.Rd | 6
MuMIn-1.7.2/MuMIn/man/MuMIn-package.Rd | 26 +--
MuMIn-1.7.2/MuMIn/man/dredge.Rd | 35 +---
MuMIn-1.7.2/MuMIn/man/mod.sel.Rd | 4
MuMIn-1.7.2/MuMIn/man/model-utils.Rd | 7
MuMIn-1.7.2/MuMIn/man/model.avg.Rd | 27 ---
MuMIn-1.7.2/MuMIn/man/r.squaredLR.Rd | 16 +
MuMIn-1.7.2/MuMIn/man/supported-classes.Rd |only
MuMIn-1.7.2/MuMIn/tests/classes.R | 173 --------------------
MuMIn-1.7.2/MuMIn/tests/coxme.R | 18 +-
MuMIn-1.7.2/MuMIn/tests/hurdle.R |only
MuMIn-1.7.2/MuMIn/tests/me.R |only
MuMIn-1.7.2/MuMIn/tests/misc-tests.R | 43 -----
MuMIn-1.7.2/MuMIn/tests/unmarked.R | 10 +
37 files changed, 586 insertions(+), 881 deletions(-)
Path: /cran/updated | permanent link
Title: Simulating migration under climate change
Diff between MigClim versions 0.3 dated 2011-12-30 and 1.0 dated 2012-01-31
More information about MigClim at CRAN
Description: Functions for simulating species migration under climate
change scenarios.
Author: Robin Engler
Maintainer: Robin Engler
DESCRIPTION | 17 ++--
MD5 | 20 ++--
NAMESPACE | 2
R/MigClim.R | 40 +++++++++
man/MigClim.genClust.Rd |only
man/MigClim.migrate.Rd | 31 ++-----
man/MigClim.plot.Rd | 2
man/MigClim.validate.Rd |only
src/file_io.c | 202 +++++++++++++++++++++++++++++++++++++++++++++++-
src/genclust.c |only
src/migclim.h | 14 ++-
src/migrate.c | 8 -
src/validate.c |only
13 files changed, 291 insertions(+), 45 deletions(-)
Path: /cran/updated | permanent link
Title: Tools and Classes for Statistical Models
Diff between modeltools versions 0.2-18 dated 2011-08-23 and 0.2-19 dated 2012-01-31
More information about modeltools at CRAN
Description: A collection of tools to deal with statistical models.
The functionality is experimental and the user interface is
likely to change in the future. The documentation is rather
terse, but packages `coin' and `party' have some working
examples. However, if you find the implemented ideas
interesting we would be very interested in a discussion of this
proposal. Contributions are more than welcome!
Author: Torsten Hothorn, Friedrich Leisch, Achim Zeileis
Maintainer: Torsten Hothorn
modeltools-0.2-18/modeltools/CHANGES |only
modeltools-0.2-18/modeltools/inst/CHANGES |only
modeltools-0.2-19/modeltools/DESCRIPTION | 22 +++++++++++-----------
modeltools-0.2-19/modeltools/MD5 | 10 +++++-----
modeltools-0.2-19/modeltools/NAMESPACE | 1 +
modeltools-0.2-19/modeltools/NEWS |only
modeltools-0.2-19/modeltools/R/survReg.R | 5 +++++
modeltools-0.2-19/modeltools/inst/NEWS |only
8 files changed, 22 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: GeneticStudio packages for R.
Diff between gstudio versions 0.6 dated 2012-01-12 and 0.8 dated 2012-01-31
More information about gstudio at CRAN
Description: This package was created to support population genetics
and landscape genetic courses I teach at Virginia Commonwealth
University. This package contains classes and functions for
the spatial analysis of marker data to include structure
statistics, analyses based upon allele frequencies, and the
Population Graphs network analysis of spatial conditional
genetic covariance.
Author: Rodney J. Dyer
Maintainer: Rodney J. Dyer
gstudio-0.6/gstudio/inst/docs |only
gstudio-0.8/gstudio/.Rinstignore |only
gstudio-0.8/gstudio/.tm_properties | 3
gstudio-0.8/gstudio/ChangeLog | 9 +
gstudio-0.8/gstudio/DESCRIPTION | 8 -
gstudio-0.8/gstudio/MD5 | 73 +++-------------
gstudio-0.8/gstudio/R/Locus-class.R | 11 +-
gstudio-0.8/gstudio/R/population.graph.R | 9 +
gstudio-0.8/gstudio/R/read.population.R | 23 +++--
gstudio-0.8/gstudio/inst/doc |only
gstudio-0.8/gstudio/man/Locus.Rd | 9 +
gstudio-0.8/gstudio/man/read.population.Rd | 16 ++-
gstudio-0.8/gstudio/tests/test.Locus.R | 14 +++
gstudio-0.8/gstudio/tests/test.congruence_probability.R | 2
gstudio-0.8/gstudio/tests/test.genetic_diversity.R | 1
gstudio-0.8/gstudio/tests/test.population_graph.R | 2
gstudio-0.8/gstudio/tests/test.stratum_distance.R | 4
17 files changed, 98 insertions(+), 86 deletions(-)
Path: /cran/updated | permanent link
Title: Forecasting mortality, fertility, migration and population data
Diff between demography versions 1.10 dated 2011-10-18 and 1.11 dated 2012-01-31
More information about demography at CRAN
Description: Functions for demographic analysis including lifetable
calculations; Lee-Carter modelling; functional data analysis of
mortality rates, fertility rates, net migration numbers; and
stochastic population forecasting.
Author: Rob J Hyndman with contributions from Heather Booth, Leonie
Tickle and John Maindonald
Maintainer: Rob J Hyndman
ChangeLog | 5 +++++
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
R/demogdata.R | 4 ++--
R/fdm.R | 12 +++++++++---
R/netmigration.R | 1 +
man/forecast.fdm.Rd | 3 ++-
7 files changed, 29 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
More information about DDD at CRAN
Path: /cran/new | permanent link
More information about CAscaling at CRAN
Path: /cran/new | permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-29 1.1-0
2009-09-28 1.0-9
2009-01-26 1.0-8
2008-04-27 1.0-7
2008-04-16 1.0-6
2008-04-14 1.0-4
2008-04-01 1.0.2
2008-04-01 1.0-3
Title: GUI Tool for Data Management like SPSS or Stata
Diff between Rz versions 0.2-1 dated 2011-04-04 and 0.3-3 dated 2012-01-31
More information about Rz at CRAN
Description: R is very powerfull but not enough for social science
becouse of lack in some functionality for managing survey data
SPSS or Stata provides. Memisc package supplements these,
variable labels, value labels, definable missing values and so
on, but to efficiently work these functions need graphical
interface to overlook data. This package provides such
graphical interface similar to SPSS's Variable View and data
managing system using memisc package as backend. Additionally,
Rz has powerful plot assistant interface based on ggplot2.
Author: Masahiro Hayashi
Maintainer: Masahiro Hayashi
Rz-0.2-1/Rz/R/class.R |only
Rz-0.3-3/Rz/DESCRIPTION | 17 -
Rz-0.3-3/Rz/LICENSE |only
Rz-0.3-3/Rz/MD5 |only
Rz-0.3-3/Rz/NAMESPACE | 1
Rz-0.3-3/Rz/NEWS |only
Rz-0.3-3/Rz/R/RzActionGroup.R |only
Rz-0.3-3/Rz/R/RzData.R |only
Rz-0.3-3/Rz/R/RzDataCollection.R |only
Rz-0.3-3/Rz/R/RzDataHandler.R |only
Rz-0.3-3/Rz/R/RzDataSetIO.R |only
Rz-0.3-3/Rz/R/RzDataView.R |only
Rz-0.3-3/Rz/R/RzFontSettingWidget.R |only
Rz-0.3-3/Rz/R/RzMain.R |only
Rz-0.3-3/Rz/R/RzMenu.R |only
Rz-0.3-3/Rz/R/RzPlot.R |only
Rz-0.3-3/Rz/R/RzPlotFacet.R |only
Rz-0.3-3/Rz/R/RzPlotGeom.R |only
Rz-0.3-3/Rz/R/RzPlotLabel.R |only
Rz-0.3-3/Rz/R/RzPlotPosition.R |only
Rz-0.3-3/Rz/R/RzPlotSave.R |only
Rz-0.3-3/Rz/R/RzPlotStat.R |only
Rz-0.3-3/Rz/R/RzPlotStratum.R |only
Rz-0.3-3/Rz/R/RzSearchEntry.R |only
Rz-0.3-3/Rz/R/RzSettings.R |only
Rz-0.3-3/Rz/R/RzVariableView.R |only
Rz-0.3-3/Rz/R/functions.R | 135 +++++++--
Rz-0.3-3/Rz/R/zzz.R |only
Rz-0.3-3/Rz/Rz.Rproj |only
Rz-0.3-3/Rz/inst/images/table.png |only
Rz-0.3-3/Rz/inst/po/Rz.pot | 456 ++++++++++++++++++++++---------
Rz-0.3-3/Rz/inst/po/ja/LC_MESSAGES/Rz.mo |binary
Rz-0.3-3/Rz/inst/po/ja/LC_MESSAGES/Rz.po | 423 +++++++++++++++++++++++-----
Rz-0.3-3/Rz/inst/themes |only
Rz-0.3-3/Rz/inst/ui/menu.ui | 19 +
Rz-0.3-3/Rz/man/Rz-package.Rd | 3
Rz-0.3-3/Rz/misc.R |only
37 files changed, 825 insertions(+), 229 deletions(-)
Path: /cran/updated | permanent link
More information about bayesMCClust at CRAN
Path: /cran/new | permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-30 1.0
Title: Tools for parsing and generating XML within R and S-Plus.
Diff between XML versions 3.9-2 dated 2012-01-21 and 3.9-4 dated 2012-01-31
More information about XML at CRAN
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Maintainer: Duncan Temple Lang
Changes | 14 ++++++++++++++
DESCRIPTION | 6 +++---
INSTALL | 2 +-
MD5 | 34 +++++++++++++++++-----------------
R/encoding.R | 3 +++
R/nodeAccessors.R | 16 ++++++++--------
R/saveXML.R | 27 ++++++++++++++++-----------
R/xmlNodes.R | 2 +-
R/xmlTreeParse.R | 10 ++++++++--
man/getEncoding.Rd | 1 +
man/saveXML.Rd | 10 +++++-----
man/xmlValue.Rd | 2 +-
src/DocParse.c | 2 +-
src/HTMLParse.c | 4 +++-
src/Makevars.win | 5 +++--
src/RUtils.c | 4 ++--
src/Utils.h | 2 +-
src/XMLTree.c | 13 ++++++-------
18 files changed, 94 insertions(+), 63 deletions(-)
Path: /cran/updated | permanent link
More information about vacem at CRAN
Path: /cran/new | permanent link
Title: Streams of random numbers
Diff between rstream versions 1.3.1 dated 2011-05-10 and 1.3.2 dated 2012-01-31
More information about rstream at CRAN
Description: Unified object oriented interface for multiple independent
streams of random numbers from different sources.
Author: Josef Leydold
Maintainer: Josef Leydold
DESCRIPTION | 8 -
MD5 |only
NEWS | 7 +
inst/doc/rstream.pdf |binary
man/rstream-package.Rd | 4
src/R_RNG.c | 2
src/R_RNG.h | 2
src/R_RngStreams.c | 2
src/R_RngStreams.h | 2
src/RngStreams.c | 240 +++++++++++++++++++++++++------------------------
src/RngStreams.h | 13 +-
11 files changed, 145 insertions(+), 135 deletions(-)
Path: /cran/updated | permanent link
Title: Reads mass spectrometry data in mzXML format
Diff between readMzXmlData versions 2.1.1 dated 2012-01-28 and 2.2 dated 2012-01-31
More information about readMzXmlData at CRAN
Description: Functions for reading mass spectrometry data in mzXML
format.
Author: Sebastian Gibb, Jarek Tuszynski
Maintainer: Sebastian Gibb
DESCRIPTION | 10 +++++-----
MD5 | 12 ++++++------
NEWS | 3 +++
R/base64.R | 9 ++++++++-
R/parseMzXml.R | 12 +++++++++---
man/base64.Rd | 8 +++++---
man/readMzXmlData-package.Rd | 4 ++--
7 files changed, 38 insertions(+), 20 deletions(-)
Path: /cran/updated | permanent link
Title: Hierarchical Models Made Easy with Data Cloning
Diff between dcmle versions 0.1-1 dated 2011-10-18 and 0.1-3 dated 2012-01-31
More information about dcmle at CRAN
Description: S4 classes around infrastructure provided by the dclone
package to make package development with data cloning for
hierarchical models easy as a breeze.
Author: Peter Solymos
Maintainer: Peter Solymos
DESCRIPTION | 13 +++++++------
MD5 | 18 +++++++++---------
NAMESPACE | 3 ++-
R/dcmle-classes.R | 3 ++-
R/dcmle-methods.R | 9 +++++++--
R/dcmle.R | 21 ++++++++++++++++++---
R/zzz.R | 2 +-
inst/ChangeLog | 14 ++++++++++++++
man/dcmle.Rd | 5 +++--
man/examples.Rd | 2 +-
10 files changed, 64 insertions(+), 26 deletions(-)
Path: /cran/updated | permanent link
Title: Data Cloning and MCMC Tools for Maximum Likelihood Methods
Diff between dclone versions 1.5-0 dated 2011-10-18 and 1.7-0 dated 2012-01-31
More information about dclone at CRAN
Description: Low level functions for implementing maximum likelihood
estimating procedures for complex models using data cloning and
Bayesian Markov chain Monte Carlo methods with support for
JAGS, WinBUGS and OpenBUGS. Parallel MCMC computation is
supported and can result in nearly linear speed-up.
Author: Peter Solymos
Maintainer: Peter Solymos
DESCRIPTION | 14 ++--
MD5 | 85 +++++++++++++-----------
NAMESPACE | 14 +++-
R/Extract.mcmc.list.dc.R |only
R/codaSamples.R | 2
R/dc.parfit.R | 47 +++++++++++--
R/dcFit.R | 22 +++++-
R/evalParallelArgument.R |only
R/jags.parfit.R | 16 +++-
R/jagsModel.R | 2
R/mclapplySB.R |only
R/parCodaSamples.R | 19 ++++-
R/parJagsModel.R | 18 ++++-
R/parLapplySB.R | 1
R/parLapplySLB.R | 1
R/parListFactories.R | 3
R/parListModules.R | 3
R/parLoadModule.R | 3
R/parSetFactory.R | 3
R/parUnloadModule.R | 3
R/parUpdate.R | 10 ++
R/parallel.inits.R | 2
R/plotClusterSize.R | 13 ++-
R/snowWrapper.R | 140 ++++++++++++++++++++++++-----------------
R/stack.mcmc.list.R |only
R/updated.model.mcmc.list.dc.R |only
R/zzz.R | 5 -
inst/ChangeLog | 52 ++++++++++++++-
man/bugs.fit.Rd | 2
man/clusterSize.Rd | 5 +
man/clusterSplitSB.Rd | 2
man/dc.fit.Rd | 6 +
man/dc.parfit.Rd | 26 ++++++-
man/dclone-package.Rd | 5 -
man/evalParallelArgument.Rd |only
man/jags.parfit.Rd | 11 ++-
man/mclapplySB.Rd |only
man/mcmcapply.Rd | 21 +++++-
man/parCodaSamples.Rd | 21 +++---
man/parJagsModel.Rd | 9 +-
man/parLoadModule.Rd | 2
man/parSetFactory.Rd | 2
man/parUpdate.Rd | 7 +-
man/parallel.inits.Rd | 6 +
man/snowWrapper.Rd | 19 ++++-
man/update.mcmc.list.Rd | 2
man/write.jags.model.Rd | 4 +
47 files changed, 453 insertions(+), 175 deletions(-)
Path: /cran/updated | permanent link
Title: Extension of data.frame for fast indexing, fast ordered joins,
fast assignment, fast grouping and list columns.
Diff between data.table versions 1.7.8 dated 2012-01-25 and 1.7.9 dated 2012-01-31
More information about data.table at CRAN
Description: Enhanced data.frame. Fast indexing, fast ordered joins,
fast assignment, fast grouping and list columns in a short and
flexible syntax. i and j may be expressions of column names
directly, for faster development. Example: X[Y] is a fast join
for large data.
Author: M Dowle, T Short, S Lianoglou
Maintainer: M Dowle
data.table-1.7.8/data.table/R/setattr.R |only
data.table-1.7.9/data.table/DESCRIPTION | 8
data.table-1.7.9/data.table/MD5 | 31 +--
data.table-1.7.9/data.table/NAMESPACE | 2
data.table-1.7.9/data.table/NEWS | 38 ++++
data.table-1.7.9/data.table/R/cedta.R | 6
data.table-1.7.9/data.table/R/data.table.R | 114 +++++++++----
data.table-1.7.9/data.table/R/merge.R | 3
data.table-1.7.9/data.table/R/read.R | 2
data.table-1.7.9/data.table/R/setkey.R | 9 -
data.table-1.7.9/data.table/inst/doc/datatable-faq.pdf |binary
data.table-1.7.9/data.table/inst/doc/datatable-intro.pdf |binary
data.table-1.7.9/data.table/inst/doc/datatable-timings.pdf |binary
data.table-1.7.9/data.table/inst/tests/tests.Rraw | 113 ++++++++----
data.table-1.7.9/data.table/man/setkey.Rd | 51 ++++-
data.table-1.7.9/data.table/src/assign.c | 16 +
data.table-1.7.9/data.table/src/wrappers.c | 5
17 files changed, 278 insertions(+), 120 deletions(-)
Path: /cran/updated | permanent link
Title: Spatial Search Trees
Diff between SearchTrees versions 0.1.6 dated 2011-10-04 and 0.5 dated 2012-01-30
More information about SearchTrees at CRAN
Description: This package provides an implementation of the QuadTree
data structure. It uses this to implement fast k-Nearest
Neighbor and Rectangular range lookups in 2 dimenions. The
primary target is high performance interactive graphics.
Author: Gabriel Becker
Maintainer: Gabriel Becker
SearchTrees-0.1.6/SearchTrees/R/QuadTree-internal.R |only
SearchTrees-0.1.6/SearchTrees/man/createIndex.Rd |only
SearchTrees-0.1.6/SearchTrees/man/findKNN.Rd |only
SearchTrees-0.1.6/SearchTrees/man/getPointsInRect.Rd |only
SearchTrees-0.1.6/SearchTrees/src/Rsearchtrees.h |only
SearchTrees-0.1.6/SearchTrees/src/kdtree.c |only
SearchTrees-0.1.6/SearchTrees/src/quadtree.c |only
SearchTrees-0.5/SearchTrees/DESCRIPTION | 6 ++--
SearchTrees-0.5/SearchTrees/MD5 | 25 +++++++++---------
SearchTrees-0.5/SearchTrees/NAMESPACE | 8 ++---
SearchTrees-0.5/SearchTrees/R/quadtree.R | 13 +++++++--
SearchTrees-0.5/SearchTrees/R/quadtree2.R |only
SearchTrees-0.5/SearchTrees/man/QuadTree-class.Rd | 24 +++++++----------
SearchTrees-0.5/SearchTrees/man/SearchTree-class.Rd | 22 +++++++--------
SearchTrees-0.5/SearchTrees/man/createTree.Rd |only
SearchTrees-0.5/SearchTrees/man/knnLookup-methods.Rd |only
SearchTrees-0.5/SearchTrees/man/knnLookup.Rd |only
SearchTrees-0.5/SearchTrees/man/rectLookup-methods.Rd |only
SearchTrees-0.5/SearchTrees/man/rectLookup.Rd |only
SearchTrees-0.5/SearchTrees/src/Rsearchtrees2.h |only
SearchTrees-0.5/SearchTrees/src/quadtree2.c |only
21 files changed, 51 insertions(+), 47 deletions(-)
Path: /cran/updated | permanent link
Title: This package creates variance dispersion graphs for response
surface designs
Diff between Vdgraph versions 1.0-1 dated 2011-06-03 and 2.0-1 dated 2012-01-30
More information about Vdgraph at CRAN
Description: This package calls a modification of the published FORTRAN
code for producing variance dispersion graphs. For more details
on variance dispersion graphs see "A Computer Program for
Generating Variance Dispersion Graphs" by G. Vining, Journal of
Quality Technology, Vol. 25 No. 1 January 1993.
Author: John Lawson
Maintainer: John Lawson
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE | 3 ++-
R/Compare2Vdg.R |only
R/Vdgraph.R | 20 ++++++++++++++++++--
R/f.R |only
data/D310.rda |binary
data/D311A.rda |binary
data/D311B.rda |binary
data/D416A.rda |binary
data/D416B.rda |binary
data/D416C.rda |binary
data/D628A.rda |binary
data/Hex2.rda |binary
data/SCDDL5.rda |binary
data/SCDH2.rda |binary
data/SCDH3.rda |binary
data/SCDH4.rda |binary
data/SCDH5.rda |binary
data/SCDH6.rda |binary
man/Compare2Vdg.Rd |only
man/Vdgraph.Rd | 3 +--
man/f.Rd |only
src/vdg.f | 2 +-
24 files changed, 26 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Title: Running Winsteps in R
Diff between Rwinsteps versions 1.0-0 dated 2011-09-02 and 1.0-1 dated 2012-01-30
More information about Rwinsteps at CRAN
Description: The Rwinsteps package facilitates communication between R
and the Rasch modeling software Winsteps. The package currently
includes functions for reading and writing command files,
sending them to Winsteps, reading and writing data according to
command file specifications, reading output into R, and
plotting various results.
Author: Anthony Albano
Maintainer: Anthony Albano
DESCRIPTION | 8 ++++----
MD5 | 26 +++++++++++++-------------
NEWS | 9 ++++++++-
R/plot.ifile.R | 3 +--
R/print.winsteps.R | 2 +-
R/read.ifile.R | 19 +++++++++++--------
R/read.pfile.R | 19 +++++++++++--------
R/read.wcmd.R | 4 ++--
R/rtef.R | 1 -
R/rtif.R | 2 +-
R/rtrf.R | 2 +-
man/Rwinsteps-package.Rd | 4 ++--
man/ifile.Rd | 9 ++++++---
man/plot.ifile.Rd | 3 +--
14 files changed, 62 insertions(+), 49 deletions(-)
Path: /cran/updated | permanent link
Title: Prediction Error Curves for Survival Models
Diff between pec versions 2.1.2 dated 2011-12-22 and 2.1.7 dated 2012-01-30
More information about pec at CRAN
Description: Validation of predicted surival probabilities using
inverse weighting and resampling.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds
DESCRIPTION | 9 +-
MD5 | 44 +++++----
NAMESPACE | 2
R/CindexBootstrapCrossValidation.R | 64 +++++++-------
R/R2.R | 2
R/bootstrapCrossValidation.R | 6 +
R/calPlot.R | 1
R/checkModels.R | 4
R/cindexMethods.R | 166 +++++++++++++++++++++++++------------
R/crps.R | 2
R/ipcw.R | 20 ++--
R/kFoldCrossValidation.R | 14 ++-
R/pecMethods.R | 18 ----
R/plot.Cindex.R | 4
R/predictEventProb.R | 7 +
R/print.Cindex.R | 21 +++-
R/pseudoPecMethods.R | 2
R/resolveSplitMethod.R | 8 -
R/summary.pec.R | 2
exa/Cindex-Examples.R |only
exa/Pec-Examples.R | 7 +
man/cindex.Rd | 8 +
src/ccr.c |only
src/cindex.c | 36 ++++++--
24 files changed, 286 insertions(+), 161 deletions(-)
Path: /cran/updated | permanent link
Title: Multivariate Autoregressive State-Space Modeling
Diff between MARSS versions 2.7 dated 2011-10-23 and 2.8 dated 2012-01-30
More information about MARSS at CRAN
Description: The MARSS package provides maximum-likelihood parameter
estimation for constrained and unconstrained linear
multivariate autoregressive state-space (MARSS) models fit to
multivariate time-series data. Fitting is primarily via an
Expectation-Maximization (EM) algorithm, although fitting via
the BFGS algorithm (using the optim function) is also provided.
MARSS models are a class of dynamic linear model (DLM) and
vector autoregressive model (VAR) model. Functions are
provided for parametric and innovations bootstrapping, Kalman
filtering and smoothing, bootstrap model selection criteria
(AICb), confidences intervals via the hessian approximation and
via bootstrapping and calculation of auxilliary residuals for
detecting outliers and shocks. The user guide shows examples
of using MARSS for parameter estimation for a variety of
applications, model selection, dynamic factor analysis, outlier
and shock detection, and addition of covariates. Type
RShowDoc("UserGuide", package="MARSS") at the R command line to
open the MARSS user guide. Online workshops (lecture material)
at http://faculty.washington.edu/eeholmes/workshops.shtml
Author: Eli Holmes, Eric Ward, and Kellie Wills, NOAA, Seattle, USA
Maintainer: Eli Holmes
MARSS-2.7/MARSS/inst/doc/changes.Rnw |only
MARSS-2.7/MARSS/inst/doc/changes.pdf |only
MARSS-2.7/MARSS/inst/doc/refs |only
MARSS-2.7/MARSS/inst/doc/tex |only
MARSS-2.8/MARSS/DESCRIPTION | 14 -
MARSS-2.8/MARSS/MD5 | 56 +++----
MARSS-2.8/MARSS/NEWS |only
MARSS-2.8/MARSS/R/MARSS.R | 2
MARSS-2.8/MARSS/R/MARSSinits.R | 46 ++---
MARSS-2.8/MARSS/R/MARSSkem.r | 5
MARSS-2.8/MARSS/R/MARSSkemcheck.r | 40 ++++-
MARSS-2.8/MARSS/R/MARSSkf.R | 95 +++++++-----
MARSS-2.8/MARSS/R/MARSSmcinit.R | 30 +--
MARSS-2.8/MARSS/R/MARSSoptim.r | 46 ++++-
MARSS-2.8/MARSS/R/MARSSsettings.R | 8 -
MARSS-2.8/MARSS/R/checkPopWrap.R | 2
MARSS-2.8/MARSS/R/is_marssMLE.r | 5
MARSS-2.8/MARSS/R/popWrap.R | 4
MARSS-2.8/MARSS/R/progressBar.R |only
MARSS-2.8/MARSS/R/summary_marssm.R | 3
MARSS-2.8/MARSS/inst/doc/.Rinstignore |only
MARSS-2.8/MARSS/inst/doc/EMDerivation.Rnw | 235 +++++++++++++++++++++---------
MARSS-2.8/MARSS/inst/doc/EMDerivation.pdf |binary
MARSS-2.8/MARSS/inst/doc/Manual.bib |only
MARSS-2.8/MARSS/inst/doc/Manual.pdf |only
MARSS-2.8/MARSS/inst/doc/Quick_Start.Rnw | 34 ++++
MARSS-2.8/MARSS/inst/doc/Quick_Start.pdf |binary
MARSS-2.8/MARSS/inst/doc/UserGuide.Rnw | 17 ++
MARSS-2.8/MARSS/inst/doc/UserGuide.pdf |binary
MARSS-2.8/MARSS/inst/doc/index.html | 4
MARSS-2.8/MARSS/man/MARSSLLprofile.Rd | 2
MARSS-2.8/MARSS/man/MARSSinits.Rd | 3
MARSS-2.8/MARSS/man/MARSSoptim.Rd | 2
MARSS-2.8/MARSS/man/graywhales.Rd | 17 +-
34 files changed, 448 insertions(+), 222 deletions(-)
Path: /cran/updated | permanent link
Title: Variational Bayes Latent Position Cluster Model for networks.
Diff between VBLPCM versions 1.0 dated 2011-11-24 and 1.3 dated 2012-01-30
More information about VBLPCM at CRAN
Description: A package to fit and simulate latent position and cluster
models for statistical networks using a Variational Bayes
approximation.
Author: Michael Salter-Townshend
Maintainer: Michael Salter-Townshend
DESCRIPTION | 11 ++--
MD5 | 38 ++++++++--------
NAMESPACE |only
R/KL.R | 1
R/VBLPCM.R | 27 -----------
R/gof.vblpcm.R | 13 +++--
R/plot_network.R | 4 -
R/start.R | 10 ++--
R/zzz.R | 10 ++--
configure | 114 +++++++++++++++++++++++++++++++-------------------
man/VBLPCM-package.Rd | 54 +++++++++++------------
man/gof.vblpcm.Rd | 2
man/vblpcmfit.Rd | 4 -
man/vblpcmstart.Rd | 4 -
src/KL_funcs.c | 40 +++++++----------
src/Makevars | 8 +--
src/Makevars.in | 8 +--
src/Makevars.win |only
src/VBLPCM.c | 20 +++-----
src/bb.c | 2
src/optim.c | 3 -
21 files changed, 184 insertions(+), 189 deletions(-)
Path: /cran/updated | permanent link
More information about fwsim at CRAN
Path: /cran/new | permanent link
Title: Structural equation modeling diagnostics
Diff between semdiag versions 0.1.1 dated 2011-10-26 and 0.1.2 dated 2012-01-30
More information about semdiag at CRAN
Description: Outlier and leverage diagnostics for SEM.
Author: Zhiyong Zhang and Ke-Hai Yuan
Maintainer: Zhiyong Zhang
semdiag-0.1.1/semdiag/semdiag |only
semdiag-0.1.2/semdiag/DESCRIPTION | 6 ++--
semdiag-0.1.2/semdiag/MD5 | 32 ++-----------------------
semdiag-0.1.2/semdiag/NAMESPACE |only
semdiag-0.1.2/semdiag/R/semdiag.R | 47 +++++++++++++++++++++-----------------
5 files changed, 32 insertions(+), 53 deletions(-)
Path: /cran/updated | permanent link
Title: LDcorSV
Diff between LDcorSV versions 1.0 dated 2011-09-27 and 1.1 dated 2012-01-30
More information about LDcorSV at CRAN
Description: The package provides a set of functions which aim is to
propose four measures of linkage disequilibrium: the usual r^2
measure, the r^2_S measure (r^2 corrected by the structure
sample), the r^2_V (r^2 corrected by the relatedness of
genotyped individuals), the r^2_VS measure (r^2 corrected by
both the relatedness of genotyped individuals and the structure
of the sample).
Author: David Desrousseaux, Aurelie Siberchicot, Christine
Cierco-Ayrolles and Brigitte Mangin
Maintainer:
DESCRIPTION | 10 +++++-----
MD5 | 35 ++++++++++++++++++-----------------
NAMESPACE |only
R/Info.Locus.R | 1 -
R/Inv.proj.matrix.sdp.R | 4 ++--
R/LD.Measures.R | 8 ++++----
R/Measure.R2.R | 14 +++++++++-----
R/Measure.R2S.R | 14 ++++++++++----
R/Measure.R2V.R | 16 ++++++++++------
R/Measure.R2VS.R | 18 ++++++++++--------
data/data.test.rda |binary
man/Inv.proj.matrix.sdp.Rd | 2 +-
man/LD.Measures.Rd | 4 ++--
man/LDcorSV-package.Rd | 6 +++---
man/Measure.R2.Rd | 4 ++--
man/Measure.R2S.Rd | 6 +++---
man/Measure.R2V.Rd | 4 ++--
man/Measure.R2VS.Rd | 4 ++--
man/data.test.Rd | 3 ++-
19 files changed, 85 insertions(+), 68 deletions(-)
Path: /cran/updated | permanent link
Title: Computation of functional similarities between GO terms and gene
products; GO enrichement analysis
Diff between GOSim versions 1.2.6 dated 2012-01-27 and 1.2.7.1 dated 2012-01-30
More information about GOSim at CRAN
Description: This package implements several functions useful for
computing similarities between GO terms and gene products based
on their GO annotation. Moreover it allows for computing a GO
enrichment analysis
Author: Holger Froehlich
Maintainer: Holger Froehlich
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/general.R | 2 +-
inst/doc/GOSim.pdf |binary
4 files changed, 8 insertions(+), 8 deletions(-)
Path: /cran/updated | permanent link
Title: Benchmark Experiments Toolbox
Diff between benchmark versions 0.3-2 dated 2011-02-10 and 0.3-3 dated 2012-01-30
More information about benchmark at CRAN
Description: The benchmark package provides a toolbox for setup,
execution and analysis of benchmark experiments. Main focus is
the analysis of data accumulating during the execution -- one
primary objective is the statistical correct computation of the
candidate algorithms' order.
Author: Manuel J. A. Eugster
Maintainer: Manuel J. A. Eugster
DESCRIPTION | 18 +++++----------
MD5 |only
NAMESPACE | 2 -
R/proto.R | 45 +++++++++++++++++--------------------
data/ghraw.RData |binary
data/ghrel.RData |binary
data/monks3raw.RData |binary
data/uci621raw.RData |binary
data/uci621rel.RData |binary
inst/CITATION | 61 ++++++++++++++++++++++++++++++++++-----------------
10 files changed, 68 insertions(+), 58 deletions(-)
Path: /cran/updated | permanent link
More information about cpm at CRAN
Path: /cran/new | permanent link
Title: doBy - Groupwise summary statistics, general linear contrasts,
population means (least-squares-means), and other utilities
Diff between doBy versions 4.5.0 dated 2012-01-19 and 4.5.1 dated 2012-01-30
More information about doBy at CRAN
Description: doBy contains a variety of utilities including: 1)
Facilities for groupwise computations of summary statistics and
other facilities for working with grouped data. 2) General
linear contrasts and LSMEANS (least-squares-means also known as
population means), 3) Rscript2HTML for autmatic generation of
HTML file from R-script with a minimum of markup, 4) other
utilities. doBy originally contained facilities for 'doing
something to data where data would be partitioned by some
variables which define groupings of data' - hence the name
doBy.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
ChangeLog | 8 +++++++-
DESCRIPTION | 6 +++---
MD5 | 26 +++++++++++++-------------
R/Rmarkup.R | 13 +++++++++----
inst/doc/doBy.pdf |binary
inst/doc/popMeans.pdf |binary
man/Rmarkup.Rd | 6 +++++-
vignettes/figures/doBy-042.pdf |binary
vignettes/figures/doBy-043.pdf |binary
vignettes/figures/doBy-044.pdf |binary
vignettes/figures/doBy-046.pdf |binary
vignettes/figures/doBy-048.pdf |binary
vignettes/figures/doBy-052.pdf |binary
vignettes/figures/doBy-053.pdf |binary
14 files changed, 37 insertions(+), 22 deletions(-)
Path: /cran/updated | permanent link
More information about McSpatial at CRAN
Path: /cran/new | permanent link
Title: A framework for comparing the performance of MCMC samplers
Diff between SamplerCompare versions 1.2.1 dated 2011-08-24 and 1.2.2 dated 2012-01-29
More information about SamplerCompare at CRAN
Description: This package consists of two components: a framework for
running sets of MCMC samplers on sets of distributions with a
variety of tuning parameters and plotting functions to
visualize the results of those simulations. See sc-intro.pdf
for an introduction. Version 1.2 adds a mechanism for loading
external simulations.
Author: Madeleine Thompson
Maintainer: Madeleine Thompson
SamplerCompare-1.2.1/SamplerCompare/inst/doc/jss.bst |only
SamplerCompare-1.2.1/SamplerCompare/inst/doc/jss.cls |only
SamplerCompare-1.2.1/SamplerCompare/inst/doc/jsslogo.jpg |only
SamplerCompare-1.2.2/SamplerCompare/.Rinstignore |only
SamplerCompare-1.2.2/SamplerCompare/DESCRIPTION | 12 +-
SamplerCompare-1.2.2/SamplerCompare/MD5 | 41 ++++------
SamplerCompare-1.2.2/SamplerCompare/R/comparison-plot.R | 4
SamplerCompare-1.2.2/SamplerCompare/inst/doc/Figures/ex-compare-results.txt | 2
SamplerCompare-1.2.2/SamplerCompare/inst/doc/Figures/ex-compare-samplers.txt | 4
SamplerCompare-1.2.2/SamplerCompare/inst/doc/Figures/ex-comparison-plot.pdf |binary
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SamplerCompare-1.2.2/SamplerCompare/inst/doc/glue.Rnw | 7 -
SamplerCompare-1.2.2/SamplerCompare/inst/doc/glue.pdf |binary
SamplerCompare-1.2.2/SamplerCompare/inst/doc/sc-intro.pdf |binary
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SamplerCompare-1.2.2/SamplerCompare/man/ar.act.Rd | 4
SamplerCompare-1.2.2/SamplerCompare/man/chud.Rd | 4
SamplerCompare-1.2.2/SamplerCompare/man/compare.samplers.Rd | 10 +-
SamplerCompare-1.2.2/SamplerCompare/man/comparison.plot.Rd | 12 +-
SamplerCompare-1.2.2/SamplerCompare/man/compounded.sampler.Rd | 2
SamplerCompare-1.2.2/SamplerCompare/man/make.c.dist.Rd | 4
SamplerCompare-1.2.2/SamplerCompare/man/make.dist.Rd | 4
SamplerCompare-1.2.2/SamplerCompare/man/simulation.result.Rd | 4
SamplerCompare-1.2.2/SamplerCompare/man/wrap.c.sampler.Rd | 4
24 files changed, 64 insertions(+), 66 deletions(-)
Path: /cran/updated | permanent link
Title: Reads mass spectrometry data in Bruker *flex format
Diff between readBrukerFlexData versions 1.2.2 dated 2012-01-18 and 1.2.3 dated 2012-01-29
More information about readBrukerFlexData at CRAN
Description: Reads files generated by MALDI-TOF MS of Bruker Daltonics'
*flex series. Successfully tested for Bruker Daltonics'
Autoflex MS.
Author: Sebastian Gibb
Maintainer: Sebastian Gibb
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
NAMESPACE | 5 +++--
NEWS | 5 +++++
R/readBrukerFlexData.R | 15 ++++++++++++---
man/double2singlePrecision.Rd | 3 ++-
man/hpc.Rd | 2 +-
man/readBrukerFlexData-package.Rd | 4 ++--
man/readBrukerFlexFile.Rd | 1 +
9 files changed, 38 insertions(+), 21 deletions(-)
Path: /cran/updated | permanent link
Title: Visualization methods for the raster package
Diff between rasterVis versions 0.10-7 dated 2011-12-09 and 0.10-9 dated 2012-01-29
More information about rasterVis at CRAN
Description: The raster package defines classes and methods for spatial
raster data access and manipulation. The rasterVis package
complements raster providing a set of methods for enhanced
visualization and interaction.
Author: Oscar Perpinan Lamigueiro [cre, aut], Robert Hijmans [aut]
Maintainer: Oscar Perpinan Lamigueiro
DESCRIPTION | 19 +++++++++------
MD5 | 16 ++++++-------
R/contourplot.R | 3 +-
R/gplot.R | 41 ++++++++++++++++++++--------------
R/grid.R | 40 ++++++++++++++++-----------------
R/levelplot.R | 56 ++++++++++++++++++++++++-----------------------
man/gplot-methods.Rd | 21 ++++++++++-------
man/levelplot-methods.Rd | 16 +++++++++++--
rasterVis-Ex.R | 33 ++++++++++++++++++---------
9 files changed, 143 insertions(+), 102 deletions(-)
Path: /cran/updated | permanent link
More information about rSFA at CRAN
Path: /cran/new | permanent link
Title: R interface to the PostgreSQL database system
Diff between RPostgreSQL versions 0.3-1 dated 2012-01-03 and 0.3-2 dated 2012-01-29
More information about RPostgreSQL at CRAN
Description: Database interface and PostgreSQL driver for R This
package provides a Database Interface (DBI) compliant driver
for R to access PostgreSQL database systems.
In order to build and install this package from source, PostgreSQL
itself must be present your system to provide PostgreSQL
functionality via its libraries and header files. These files
are provided as postgresql-devel package under some Linux
distributions.
On Microsoft Windows system the attached libpq library source will be
used.
A wiki and issue tracking system for the package are available at
Google Code at https://code.google.com/p/rpostgresql/ .
Author: Joe Conway, Dirk Eddelbuettel, Tomoaki Nishiyama, Sameer Kumar
Prayaga (during 2008), Neil Tiffin
Maintainer: Tomoaki Nishiyama
RPostgreSQL-0.3-1/RPostgreSQL/src/install.libs.R |only
RPostgreSQL-0.3-2/RPostgreSQL/ChangeLog | 14 +++
RPostgreSQL-0.3-2/RPostgreSQL/DESCRIPTION | 33 ++++----
RPostgreSQL-0.3-2/RPostgreSQL/MD5 | 17 ++--
RPostgreSQL-0.3-2/RPostgreSQL/inst/NEWS | 11 ++
RPostgreSQL-0.3-2/RPostgreSQL/inst/doc/DBI.pdf |binary
RPostgreSQL-0.3-2/RPostgreSQL/src/Makevars.win | 4 -
RPostgreSQL-0.3-2/RPostgreSQL/src/libpq/Makefile.global.win64 | 37 ++++++++--
RPostgreSQL-0.3-2/RPostgreSQL/src/libpq/Makefile.shlib | 17 +++-
RPostgreSQL-0.3-2/RPostgreSQL/src/libpq/Makefile.win | 2
10 files changed, 102 insertions(+), 33 deletions(-)
Path: /cran/updated | permanent link
Title: Rcmdr Plug-In for Business and Customer Analytics
Diff between RcmdrPlugin.BCA versions 0.9-2 dated 2011-12-28 and 0.9-3 dated 2012-01-29
More information about RcmdrPlugin.BCA at CRAN
Description: This package provides an Rcmdr "plug-in" to accompany the
book Customer and Business Analytics: Applied Data Mining for
Business Decision Making Using R by Daniel S. Putler and Robert
E. Krider.
Author: Dan Putler
Maintainer: Dan Putler
DESCRIPTION | 16 +--
MD5 | 10 -
R/RcmdrPlugin.BCA.R | 206 ---------------------------------------
inst/etc/menus.txt | 6 -
man/RcmdrPlugin.BCA-package.Rd | 10 -
man/RcmdrPlugin.BCA.Utilities.Rd | 4
6 files changed, 22 insertions(+), 230 deletions(-)
Path: /cran/updated | permanent link
Title: R Client for Mobilize/Andwellness server
Diff between Ohmage versions 2.9-5 dated 2012-01-27 and 2.9-6 dated 2012-01-29
More information about Ohmage at CRAN
Description: R Client for Mobilize and Andwellness server. Implements
basic R functions to call and process data.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
DESCRIPTION | 6 +++---
MD5 | 9 +++++----
R/multifactor.R | 2 +-
R/oh.call.R | 4 ++++
test/benchmark.R |only
test/datagen.R | 4 +---
6 files changed, 14 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
More information about marelac at CRAN
Path: /cran/new | permanent link
Title: Graph Based Multiple Comparison Procedures
Diff between gMCP versions 0.7-4 dated 2012-01-22 and 0.7-5 dated 2012-01-29
More information about gMCP at CRAN
Description: This package provides functions and a graphical user
interface for graphical described multiple test procedures.
Author: Kornelius Rohmeyer, Florian Klinglmueller (parametric tests,
adaptive designs), Bjoern Bornkamp (power simulations)
Maintainer: Kornelius Rohmeyer
gMCP-0.7-4/gMCP/inst/java/jhlir.jar |only
gMCP-0.7-5/gMCP/.Rinstignore | 6
gMCP-0.7-5/gMCP/DESCRIPTION | 12 -
gMCP-0.7-5/gMCP/INSTALL | 4
gMCP-0.7-5/gMCP/MD5 | 95 +++++-----
gMCP-0.7-5/gMCP/NEWS | 33 +++
gMCP-0.7-5/gMCP/R/calcPower.R | 2
gMCP-0.7-5/gMCP/R/closure.R | 2
gMCP-0.7-5/gMCP/R/gMCP.R | 13 -
gMCP-0.7-5/gMCP/R/graphTest.R | 2
gMCP-0.7-5/gMCP/R/misc.R | 25 ++
gMCP-0.7-5/gMCP/R/onLoad.R | 4
gMCP-0.7-5/gMCP/R/subVariables.R | 2
gMCP-0.7-5/gMCP/TODO | 31 ++-
gMCP-0.7-5/gMCP/inst/CITATION | 12 -
gMCP-0.7-5/gMCP/inst/References.html | 5
gMCP-0.7-5/gMCP/inst/doc/AQuickStart.pdf |binary
gMCP-0.7-5/gMCP/inst/doc/gMCP.pdf |binary
gMCP-0.7-5/gMCP/inst/doc/gMCP/gMCP.Rnw | 12 +
gMCP-0.7-5/gMCP/inst/doc/literatur.bib | 9
gMCP-0.7-5/gMCP/inst/doc/parametric.pdf |binary
gMCP-0.7-5/gMCP/inst/doc/pictures/optionsDialog.png |binary
gMCP-0.7-5/gMCP/inst/doc/pictures/optionsDialog2.png |only
gMCP-0.7-5/gMCP/inst/doc/pictures/optionsDialog3.png |only
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/config/GeneralConfig.java | 49 +++++
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/CreateGraphGUI.java | 4
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/MenuBarMGraph.java | 20 +-
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/GroupDialog.java |only
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/PowerDialogParameterUncertainty.java | 82 ++++++--
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/TextFileViewer.java | 52 +++--
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/graph/Edge.java | 4
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/graph/EdgeWeight.java | 6
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/graph/GraphMCP.java | 3
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/graph/NetList.java | 61 +++++-
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/graph/PView.java | 37 +++
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/options/MiscPanel.java | 17 +
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/options/NumericPanel.java | 55 +++++
gMCP-0.7-5/gMCP/inst/java-src/org/af/gMCP/gui/options/OptionsDialog.java | 1
gMCP-0.7-5/gMCP/inst/java-src/tests/RControlTest.java | 8
gMCP-0.7-5/gMCP/inst/java/afcommons.jar |only
gMCP-0.7-5/gMCP/inst/java/gsrmtp.jar |binary
gMCP-0.7-5/gMCP/inst/unitTests/runit.LaTeX.R | 4
gMCP-0.7-5/gMCP/inst/unitTests/runit.gMCP.R | 26 ++
gMCP-0.7-5/gMCP/man/calcPower.Rd | 4
gMCP-0.7-5/gMCP/man/doInterim.Rd | 6
gMCP-0.7-5/gMCP/man/gMCP-package.Rd | 37 ++-
gMCP-0.7-5/gMCP/man/gMCP.Rd | 25 +-
gMCP-0.7-5/gMCP/man/generateBounds.Rd | 6
gMCP-0.7-5/gMCP/man/graphTest.Rd | 10 -
gMCP-0.7-5/gMCP/man/rejectNode.Rd | 6
gMCP-0.7-5/gMCP/man/substituteEps.Rd | 2
gMCP-0.7-5/gMCP/src/gMCP.c | 24 +-
52 files changed, 606 insertions(+), 212 deletions(-)
Path: /cran/updated | permanent link
Title: Epidemiological calculator
Diff between epicalc versions 2.14.0.3 dated 2012-01-16 and 2.14.1.0 dated 2012-01-29
More information about epicalc at CRAN
Description: Functions making R easy for epidemiological calculation.
Author: Virasakdi Chongsuvivatwong
Maintainer: Virasakdi Chongsuvivatwong
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/epicalc.R | 26 +++++++++++++++++++-------
man/tableStack.rd | 3 ++-
4 files changed, 28 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Title: Plots Coefficients from Fitted Models
Diff between coefplot versions 1.1.5 dated 2012-01-12 and 1.1.6 dated 2012-01-29
More information about coefplot at CRAN
Description: Plots the coefficients from a model object
Author: Jared P. Lander
Maintainer:
.gitignore |only
DESCRIPTION | 6 +++---
MD5 | 27 ++++++++++++++-------------
R/coefplot.r | 2 +-
R/multiplot.r | 2 +-
R/utilities.r | 15 +++++++++------
README | 2 ++
coefplot.Rproj |only
man/buildModelCI.Rd | 8 ++++----
man/buildPlotting.lm.Rd | 15 ++++++++-------
man/coefplot.Rd | 2 +-
man/coefplot.lm.Rd | 19 ++++++++++---------
man/getModelInfo.lm.Rd | 2 +-
man/getModelInfo.rxLinMod.Rd | 4 ++--
man/meltModelCI.Rd | 18 +++++++++++-------
man/multiplot.Rd | 23 ++++++++++++-----------
16 files changed, 79 insertions(+), 66 deletions(-)
Path: /cran/updated | permanent link
Title: A general-purpose package for dynamic report generation in R
Diff between knitr versions 0.1 dated 2012-01-17 and 0.2 dated 2012-01-28
More information about knitr at CRAN
Description: This package provides a general-purpose tool for dynamic
report generation in R, which can be used to deal with any type
of (plain text) files, including Sweave and HTML. The patterns
of code chunks and inline R expressions can be customized. R
code is evaluated as if it were copied and pasted in an R
terminal thanks to the evaluate package (e.g. we do not need to
explicitly print() plots from ggplot2 or lattice). R code can
be reformatted by the formatR package so that long lines are
automatically wrapped, with indent and spaces being added, and
comments being preserved. A simple caching mechanism is
provided to cache results from computations for the first time
and the computations will be skipped the next time. Almost all
common graphics devices, including those in base R and add-on
packages like Cairo, cairoDevice and tikzDevice, are built-in
with this package and it is straightforward to switch between
devices without writing any special functions. The width and
height as well as alignment of plots in the output document can
be specified in chunk options (the size of plots for graphics
devices is still supported as usual). Multiple plots can be
recorded in a single code chunk, and it is also allowed to
rearrange plots to the end of a chunk or just keep the last
plot. Warnings, messages and errors are written in the output
document by default (can be turned off). Currently LaTeX, HTML
and Markdown are supported, and other output formats can be
supported by hook functions. The large collection of hooks in
this package makes it possible for the user to control almost
everything in the R code input and output. Hooks can be used
either to format the output or to run a specified R code
fragment before or after a code chunk. Most features are
borrowed or inspired by Sweave, cacheSweave, pgfSweave, brew
and decumar.
Author: Yihui Xie
Maintainer: Yihui Xie
knitr-0.1/knitr/inst/examples/knitr-code-themes.Rnw |only
knitr-0.2/knitr/.Rinstignore |only
knitr-0.2/knitr/DESCRIPTION | 8
knitr-0.2/knitr/FAQ.md |only
knitr-0.2/knitr/MD5 | 78 +++++---
knitr-0.2/knitr/NAMESPACE | 4
knitr-0.2/knitr/NEWS |only
knitr-0.2/knitr/R/block.R | 46 +++--
knitr-0.2/knitr/R/cache.R | 4
knitr-0.2/knitr/R/defaults.R | 16 +
knitr-0.2/knitr/R/eclipse.R | 3
knitr-0.2/knitr/R/hooks.R | 48 +++--
knitr-0.2/knitr/R/output.R | 153 ++++++++++++++---
knitr-0.2/knitr/R/package.R | 14 +
knitr-0.2/knitr/R/parser.R | 30 ++-
knitr-0.2/knitr/R/pattern.R | 2
knitr-0.2/knitr/R/plot.R | 19 ++
knitr-0.2/knitr/R/themes.R | 5
knitr-0.2/knitr/R/utils.R | 65 ++++++-
knitr-0.2/knitr/README.md | 43 +---
knitr-0.2/knitr/inst/doc |only
knitr-0.2/knitr/inst/examples/knitr-graphics.Rnw | 2
knitr-0.2/knitr/inst/examples/knitr-graphics.lyx | 3
knitr-0.2/knitr/inst/examples/knitr-input-child.Rnw |only
knitr-0.2/knitr/inst/examples/knitr-input.Rnw |only
knitr-0.2/knitr/inst/examples/knitr-minimal.Rnw | 5
knitr-0.2/knitr/inst/examples/knitr-minimal.lyx | 28 ++-
knitr-0.2/knitr/inst/examples/knitr-minimal_knit_.html | 6
knitr-0.2/knitr/inst/examples/knitr-minimal_knit_.md | 7
knitr-0.2/knitr/inst/examples/knitr-themes.Rnw | 9 -
knitr-0.2/knitr/inst/examples/knitr-themes.lyx | 24 ++
knitr-0.2/knitr/inst/examples/knitr-twocolumn.Rnw |only
knitr-0.2/knitr/inst/examples/knitr-twocolumn.lyx |only
knitr-0.2/knitr/inst/misc/knitr-minimal_knit_.html |only
knitr-0.2/knitr/inst/misc/knitr-template.Rnw |only
knitr-0.2/knitr/inst/misc/knitr-template.lyx |only
knitr-0.2/knitr/inst/misc/stitch-test.R |only
knitr-0.2/knitr/inst/tests/test-parser.R | 3
knitr-0.2/knitr/inst/tests/test-utils.R | 7
knitr-0.2/knitr/man/all_patterns.Rd | 2
knitr-0.2/knitr/man/eclipse_theme.Rd | 5
knitr-0.2/knitr/man/knit.Rd | 46 ++++-
knitr-0.2/knitr/man/knit_child.Rd |only
knitr-0.2/knitr/man/knit_env.Rd |only
knitr-0.2/knitr/man/knit_theme.Rd | 2
knitr-0.2/knitr/man/knitr-package.Rd |only
knitr-0.2/knitr/man/stitch.Rd |only
47 files changed, 501 insertions(+), 186 deletions(-)
Path: /cran/updated | permanent link
Title: The Trapezoidal Distribution
Diff between trapezoid versions 1.0-4 dated 2012-01-02 and 1.0-5 dated 2012-01-28
More information about trapezoid at CRAN
Description: The trapezoid package provides dtrapezoid, ptrapezoid,
qtrapezoid, and rtrapezoid functions for the trapezoidal
distribution.
Author: Jeremy Thoms Hetzel [aut, cre]
Maintainer: Jeremy Thoms Hetzel
ChangeLog | 1 +
DESCRIPTION | 16 +++++++++-------
MD5 | 14 +++++++-------
NAMESPACE | 2 +-
inst/doc/trapezoid.Rnw | 3 ++-
inst/doc/trapezoid.pdf |binary
man/trapezoid.Rd | 13 +++++++------
vignettes/trapezoid.Rnw | 3 ++-
8 files changed, 29 insertions(+), 23 deletions(-)
Path: /cran/updated | permanent link
Title: Shape constrained additive models
Diff between scam versions 1.1 dated 2012-01-22 and 1.1-1 dated 2012-01-28
More information about scam at CRAN
Description: Routines for generalized additive modelling under shape
constraints on the component functions of the linear predictor.
Models can contain multiple shape constrained (univariate
and/or bivariate) and unconstrained terms. The routines of
mgcv(gam) package are used for setting up the model matrix,
printing and plotting the results. Penalized likelihood
maximization based on Newton-Raphson method is used to fit a
model with multiple smoothing parameter selection by GCV or
UBRE/AIC.
Author: Natalya Pya
Maintainer: Natalya Pya
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/uni.smooth.const.R | 20 ++++++++++----------
man/scam-package.Rd | 4 ++--
man/smooth.construct.mdcv.smooth.spec.Rd | 7 +++----
5 files changed, 23 insertions(+), 24 deletions(-)
Path: /cran/updated | permanent link
Title: Linear Student-t Mixed-Effects Models with Censored Data
Diff between tlmec versions 0.0-1 dated 2011-12-02 and 0.0-2 dated 2012-01-28
More information about tlmec at CRAN
Description: Fit a linear mixed effects model for censored data with
Student-t or normal distributions. The errors are assumed
independent and identically distributed.
Author: Larissa Matos
Maintainer: Larissa Matos
ChangeLog | 6 ++
DESCRIPTION | 15 +++---
MD5 | 12 ++---
R/linearN.R | 25 +++++-----
R/linearT.R | 123 ++++++++++++++++++++++++++++++++++++++--------------
data/UTIdata.tab.gz |binary
man/tlmec.Rd | 2
7 files changed, 125 insertions(+), 58 deletions(-)
Path: /cran/updated | permanent link
More information about ReCiPa at CRAN
Path: /cran/new | permanent link
Title: Reads mass spectrometry data in mzXML format.
Diff between readMzXmlData versions 2.1 dated 2012-01-26 and 2.1.1 dated 2012-01-28
More information about readMzXmlData at CRAN
Description: Functions for reading mass spectrometry data in mzXML
format.
Author: Sebastian Gibb, Jarek Tuszynski
Maintainer: Sebastian Gibb
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NAMESPACE | 4 ----
NEWS | 6 +++++-
R/parseMzXml.R | 2 +-
man/readMzXmlData-package.Rd | 4 ++--
6 files changed, 17 insertions(+), 17 deletions(-)
Path: /cran/updated | permanent link
Title: Random name generating function and data set
Diff between randomNames versions 0.0-4 dated 2011-11-20 and 0.0-5 dated 2012-01-28
More information about randomNames at CRAN
Description: Function to generate random gender and ethnicity correct
first and/or last names. Names are chosen proportionally based
upon their probability of appearing in a large scale data base
of real names.
Author: Damian W. Betebenner
Maintainer: Damian W. Betebenner
DESCRIPTION | 15 +++++++++------
MD5 | 10 +++++-----
R/randomNames.R | 6 +++---
inst/CITATION | 8 ++++----
inst/NEWS | 4 ++++
man/randomNames-package.Rd | 4 ++--
6 files changed, 27 insertions(+), 20 deletions(-)
Path: /cran/updated | permanent link
Title: A Package for Running jags from R
Diff between R2jags versions 0.03-05 dated 2012-01-27 and 0.03-06 dated 2012-01-28
More information about R2jags at CRAN
Description: Using this package to call jags from R.
Author: Yu-Sung Su
Maintainer: Yu-Sung Su
CHANGELOG | 7 ++++
DESCRIPTION | 8 ++---
MD5 | 14 ++++-----
NAMESPACE | 1
R/jags.R | 26 ++++++++++++++++-
R/jagsParallel.R | 5 ++-
R/print.R | 8 ++++-
man/jags.Rd | 80 ++++++++++++++++++++++++++++++++++++++++++++-----------
8 files changed, 117 insertions(+), 32 deletions(-)
Path: /cran/updated | permanent link