Title: Create, and Refine Data Nuggets
Description: Creating, and refining data nuggets.
Data nuggets reduce a large dataset into a small collection of nuggets of
data, each containing a center (location), weight (importance), and scale
(variability) parameter. Data nugget centers are created by choosing
observations in the dataset which are as equally spaced apart as possible.
Data nugget weights are created by counting the number observations
closest to a given data nugget center. We then say the data nugget
'contains' these observations and the data nugget center is recalculated
as the mean of these observations. Data nugget scales are created by
calculating the trace of the covariance matrix of the observations
contained within a data nugget divided by the dimension of the dataset.
Data nuggets are refined by 'splitting' data nuggets which have scales or
shapes (defined as the ratio of the two largest eigenvalues of the
covariance matrix of the observations contained within the data nugget)
Reference paper: [1] Beavers, T. E., Cheng [...truncated...]
Author: Yajie Duan [cre, ctb],
Traymon Beavers [aut],
Javier Cabrera [aut],
Ge Cheng [aut],
Kunting Qi [aut],
Mariusz Lubomirski [aut]
Maintainer: Yajie Duan <yajieritaduan@gmail.com>
Diff between datanugget versions 1.3.0 dated 2024-07-29 and 1.3.1 dated 2024-09-14
DESCRIPTION | 8 MD5 | 4 R/refineDN.R | 4809 +++++++++++++++++++++++++++++------------------------------ 3 files changed, 2412 insertions(+), 2409 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.27 dated 2023-07-20 and 0.4.28-1 dated 2024-09-14
DESCRIPTION | 15 MD5 | 129 NAMESPACE | 4 NEWS.md | 93 R/color-wrappers.r | 12 R/on-load.r | 3 R/read-cid-spectravue-csv.r | 4 R/read-cie-csv.r |only R/read-fmi-cum.R | 16 R/read-licor-prn.r | 4 R/read-oojaz-file.r | 2 R/read-oopi-file.r | 2 R/read-ooss-file.r | 2 R/read-tuv-file.r | 696 README.md | 49 build/partial.rdb |binary build/vignette.rds |binary inst/doc/user-guide.R | 54 inst/doc/user-guide.Rmd | 50 inst/doc/user-guide.html | 840 - inst/extdata/2013-05-01.hel |16890 ++++++++++++------------ inst/extdata/2014-08-21_cum.hel | 1028 - inst/extdata/2014-08-22_cum.hel | 1028 - inst/extdata/CIE_illum_C.csv |only inst/extdata/CIE_illum_C.csv_metadata.json |only inst/extdata/CIE_sle_photopic.csv |only inst/extdata/CIE_sle_photopic.csv_metadata.json |only inst/extdata/FReDflowerID_157.csv | 802 - inst/extdata/qtuv-00.htm |only inst/extdata/reflectance.jaz | 4134 ++--- inst/extdata/spectrum-seq0.pi | 4108 ++--- inst/extdata/spectrum.JazIrrad | 8240 +++++------ inst/extdata/spectrum.jaz | 4134 ++--- inst/extdata/spectrum.pi | 4108 ++--- inst/extdata/uvspec-multi.dat | 6110 ++++---- inst/extdata/yoctopuce-data.csv | 1412 +- man/as.colorSpec.Rd | 164 man/colorSpec2mspct.Rd | 218 man/hyperSpec2mspct.Rd | 160 man/photobiologyInOut-package.Rd | 118 man/qtuv_clouds.Rd |only man/qtuv_s.e.irrad.Rd |only man/read_ASTER_txt.Rd | 146 man/read_CIE_csv.Rd |only man/read_FReD_csv.Rd | 128 man/read_avaspec_csv.Rd | 148 man/read_cid_spectravue_csv.Rd | 4 man/read_csi_dat.Rd | 116 man/read_fmi2mspct.Rd | 166 man/read_fmi_cum.Rd | 180 man/read_foreign2mspct.Rd | 88 man/read_li180_txt.Rd | 204 man/read_licor_prn.Rd | 204 man/read_macam_dta.Rd | 124 man/read_oo_jazirrad.Rd | 212 man/read_oo_pidata.Rd | 164 man/read_oo_ssirrad.Rd | 150 man/read_qtuv_txt.Rd | 111 man/read_tuv_usrout.Rd | 130 man/read_uvspec_disort.Rd | 126 man/read_uvspec_disort_vesa.Rd | 114 man/read_wasatch_csv.Rd | 266 man/read_yoctopuce_csv.Rd | 152 man/rspec2mspct.Rd | 158 man/spct_CCT.Rd | 108 man/spct_CRI.Rd | 92 man/spct_SSI.Rd | 100 tests/testthat/test-licor.R | 74 tests/testthat/test-tuv.R | 124 vignettes/user-guide.Rmd | 50 70 files changed, 29607 insertions(+), 28661 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: SHAP Visualizations
Description: Visualizations for SHAP (SHapley Additive exPlanations), such
as waterfall plots, force plots, various types of importance plots,
dependence plots, and interaction plots. These plots act on a
'shapviz' object created from a matrix of SHAP values and a
corresponding feature dataset. Wrappers for the R packages 'xgboost',
'lightgbm', 'fastshap', 'shapr', 'h2o', 'treeshap', 'DALEX', and
'kernelshap' are added for convenience. By separating visualization
and computation, it is possible to display factor variables in graphs,
even if the SHAP values are calculated by a model that requires
numerical features. The plots are inspired by those provided by the
'shap' package in Python, but there is no dependency on it.
Author: Michael Mayer [aut, cre],
Adrian Stando [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between shapviz versions 0.9.4 dated 2024-08-20 and 0.9.5 dated 2024-09-14
shapviz-0.9.4/shapviz/man/figures/README-dep.png |only shapviz-0.9.4/shapviz/man/figures/VIGNETTE-dep.png |only shapviz-0.9.5/shapviz/DESCRIPTION | 6 shapviz-0.9.5/shapviz/MD5 | 59 - shapviz-0.9.5/shapviz/NEWS.md | 12 shapviz-0.9.5/shapviz/R/sv_force.R | 2 shapviz-0.9.5/shapviz/R/sv_waterfall.R | 2 shapviz-0.9.5/shapviz/README.md | 56 - shapviz-0.9.5/shapviz/build/vignette.rds |binary shapviz-0.9.5/shapviz/inst/doc/basic_use.R | 29 shapviz-0.9.5/shapviz/inst/doc/basic_use.Rmd | 48 - shapviz-0.9.5/shapviz/inst/doc/basic_use.html | 98 +- shapviz-0.9.5/shapviz/inst/doc/geographic.R | 68 - shapviz-0.9.5/shapviz/inst/doc/geographic.Rmd | 70 - shapviz-0.9.5/shapviz/inst/doc/geographic.html | 138 +-- shapviz-0.9.5/shapviz/inst/doc/multiple_output.html | 8 shapviz-0.9.5/shapviz/inst/doc/tidymodels.Rmd |only shapviz-0.9.5/shapviz/inst/doc/tidymodels.html |only shapviz-0.9.5/shapviz/man/figures/README-bee.svg |only shapviz-0.9.5/shapviz/man/figures/README-dep.svg |only shapviz-0.9.5/shapviz/man/figures/README-force.svg | 381 +--------- shapviz-0.9.5/shapviz/man/figures/README-imp.svg | 360 +-------- shapviz-0.9.5/shapviz/man/figures/README-waterfall.svg | 373 +-------- shapviz-0.9.5/shapviz/man/figures/VIGNETTE-dep-ranger.png |binary shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-class-lgb-dep.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-class-lgb-imp.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-class-normal-dep1.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-class-normal-dep2.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-class-normal-imp.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-class-xgb-dep.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-class-xgb-imp.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-lgb-dep.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-lgb-imp.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-rf-dep.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-rf-imp.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-xgb-dep.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-xgb-imp.png |only shapviz-0.9.5/shapviz/man/figures/VIGNETTE-tidy-xgb-inter.png |only shapviz-0.9.5/shapviz/vignettes/basic_use.Rmd | 48 - shapviz-0.9.5/shapviz/vignettes/geographic.Rmd | 70 - shapviz-0.9.5/shapviz/vignettes/tidymodels.Rmd |only 41 files changed, 571 insertions(+), 1257 deletions(-)
Title: Genotypic Variance Components
Description: Functionalities to compute model based genetic components i.e. genotypic variance, phenotypic variance and heritability for given traits of different genotypes from replicated data using methodology explained by Burton, G. W. & Devane, E. H. (1953) (<doi:10.2134/agronj1953.00021962004500100005x>) and Allard, R.W. (2010, ISBN:8126524154).
Author: Muhammad Yaseen [aut, cre],
Sami Ullah [aut, ctb]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Diff between gvcR versions 0.1.0 dated 2018-02-20 and 0.3.0 dated 2024-09-14
gvcR-0.1.0/gvcR/R/gvc_gvar.R |only gvcR-0.1.0/gvcR/R/gvc_herit.R |only gvcR-0.1.0/gvcR/R/gvc_pvar.R |only gvcR-0.1.0/gvcR/man/gvc_gvar.Rd |only gvcR-0.1.0/gvcR/man/gvc_herit.Rd |only gvcR-0.1.0/gvcR/man/gvc_pvar.Rd |only gvcR-0.3.0/gvcR/DESCRIPTION | 20 ++++--- gvcR-0.3.0/gvcR/MD5 | 17 ++---- gvcR-0.3.0/gvcR/NAMESPACE | 8 +- gvcR-0.3.0/gvcR/NEWS.md | 6 ++ gvcR-0.3.0/gvcR/R/gvc.R |only gvcR-0.3.0/gvcR/README.md | 107 +++++++++++++++++++++++++++++++++++---- gvcR-0.3.0/gvcR/inst |only gvcR-0.3.0/gvcR/man/gvc.Rd |only 14 files changed, 127 insertions(+), 31 deletions(-)
Title: Searching for Optimal Clustering Procedure for a Data Set
Description: Distance measures (GDM1, GDM2, Sokal-Michener, Bray-Curtis, for symbolic interval-valued data), cluster quality indices (Calinski-Harabasz, Baker-Hubert, Hubert-Levine, Silhouette, Krzanowski-Lai, Hartigan, Gap, Davies-Bouldin), data normalization formulas (metric data, interval-valued symbolic data), data generation (typical and non-typical data), HINoV method, replication analysis, linear ordering methods, spectral clustering, agreement indices between two partitions, plot functions (for categorical and symbolic interval-valued data).
(MILLIGAN, G.W., COOPER, M.C. (1985) <doi:10.1007/BF02294245>,
HUBERT, L., ARABIE, P. (1985) <doi:10.1007%2FBF01908075>,
RAND, W.M. (1971) <doi:10.1080/01621459.1971.10482356>,
JAJUGA, K., WALESIAK, M. (2000) <doi:10.1007/978-3-642-57280-7_11>,
MILLIGAN, G.W., COOPER, M.C. (1988) <doi:10.1007/BF01897163>,
JAJUGA, K., WALESIAK, M., BAK, A. (2003) <doi:10.1007/978-3-642-55721-7_12>,
DAVIES, D.L., BOULDIN, D.W. (1979) &l [...truncated...]
Author: Marek Walesiak [aut] ,
Andrzej Dudek [aut, cre]
Maintainer: Andrzej Dudek <andrzej.dudek@ue.wroc.pl>
Diff between clusterSim versions 0.51-4 dated 2024-06-26 and 0.51-5 dated 2024-09-14
clusterSim-0.51-4/clusterSim/INDEX |only clusterSim-0.51-5/clusterSim/DESCRIPTION | 8 +-- clusterSim-0.51-5/clusterSim/MD5 | 27 ++++++------- clusterSim-0.51-5/clusterSim/build/partial.rdb |binary clusterSim-0.51-5/clusterSim/data/data_binary.rda |binary clusterSim-0.51-5/clusterSim/data/data_interval.rda |binary clusterSim-0.51-5/clusterSim/data/data_mixed.rda |binary clusterSim-0.51-5/clusterSim/data/data_nominal.rda |binary clusterSim-0.51-5/clusterSim/data/data_ordinal.rda |binary clusterSim-0.51-5/clusterSim/data/data_ratio.rda |binary clusterSim-0.51-5/clusterSim/man/HINoV.Symbolic.rd | 2 clusterSim-0.51-5/clusterSim/man/cluster.Gen.rd | 4 - clusterSim-0.51-5/clusterSim/man/data.Normalization.rd | 2 clusterSim-0.51-5/clusterSim/man/interval_normalization.rd | 4 - clusterSim-0.51-5/clusterSim/man/speccl.rd | 3 - 15 files changed, 25 insertions(+), 25 deletions(-)
Title: Mappable Vector Library for Handling Large Datasets
Description: Mappable vector library provides convenient way to access large datasets. Use all of your data at once, with few limits. Memory mapped data can be shared between multiple R processes. Access speed depends on storage medium, so solid state drive is recommended, preferably with PCI Express (or M.2 nvme) interface or a fast network file system. The data is memory mapped into R and then accessed using usual R list and array subscription operators. Convenience functions are provided for merging, grouping and indexing large vectors and data.frames. The layout of underlying MVL files is optimized for large datasets. The vectors are stored to guarantee alignment for vector intrinsics after memory map. The package is built on top of libMVL, which can be used as a standalone C library. libMVL has simple C API making it easy to interchange datasets with outside programs. Large MVL datasets are distributed via Academic Torrents <https://academictorrents.com/collection/mvl-datasets>.
Author: Vladimir Dergachev [aut, cre]
Maintainer: Vladimir Dergachev <support@altumrete.com>
Diff between RMVL versions 1.1.0.0 dated 2024-05-08 and 1.1.0.1 dated 2024-09-14
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/RlibMVL.c | 20 ++++++++++---------- src/libMVL.c | 2 ++ 4 files changed, 18 insertions(+), 16 deletions(-)
Title: React Helpers
Description: Make it easy to use 'React' in R with 'htmlwidget' scaffolds,
helper dependency functions, an embedded 'Babel' 'transpiler',
and examples.
Author: Facebook Inc [aut, cph] ,
Michel Weststrate [aut, cph] ,
Kent Russell [aut, cre] ,
Alan Dipert [aut] ,
Greg Lin [aut]
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between reactR versions 0.6.0 dated 2024-06-26 and 0.6.1 dated 2024-09-14
reactR-0.6.0/reactR/inst/www/react-tools/react-tools.umd.cjs |only reactR-0.6.1/reactR/DESCRIPTION | 19 +++++++---- reactR-0.6.1/reactR/MD5 | 14 ++++---- reactR-0.6.1/reactR/NEWS.md | 4 ++ reactR-0.6.1/reactR/R/dependencies.R | 2 - reactR-0.6.1/reactR/inst/doc/intro_htmlwidgets.html | 4 +- reactR-0.6.1/reactR/inst/doc/intro_inputs.html | 4 +- reactR-0.6.1/reactR/inst/doc/intro_reactR.html | 6 +-- reactR-0.6.1/reactR/inst/www/react-tools/react-tools.js |only 9 files changed, 32 insertions(+), 21 deletions(-)
Title: Inference for Phase-Type Distributions
Description: Functions to perform Bayesian inference on absorption time data for
Phase-type distributions. The methods of Bladt et al (2003)
<doi:10.1080/03461230110106435> and Aslett (2012)
<https://www.louisaslett.com/PhD_Thesis.pdf> are provided.
Author: Louis Aslett [aut, cre],
Wally Gilks [ctb]
Maintainer: Louis Aslett <louis.aslett@durham.ac.uk>
Diff between PhaseType versions 0.2.1 dated 2023-04-07 and 0.3.0 dated 2024-09-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 6 ++++++ README.md | 21 ++++++++++++--------- src/utility.c | 4 ++-- 5 files changed, 27 insertions(+), 18 deletions(-)
Title: EZ-to-Use Biplots
Description: Provides users with an EZ-to-use platform for representing data
with biplots. Currently principal component analysis (PCA), canonical variate
analysis (CVA) and simple correspondence analysis (CA) biplots are included.
This is accompanied by various formatting
options for the samples and axes. Alpha-bags and concentration ellipses
are included for visual enhancements and interpretation. For an extensive
discussion on the topic, see Gower, J.C., Lubbe, S. and le Roux, N.J.
(2011, ISBN: 978-0-470-01255-0) Understanding Biplots. Wiley: Chichester.
Author: Sugnet Lubbe [aut, cre, cph] ,
Niel le Roux [aut] ,
Johane Nienkemper-Swanepoel [aut]
,
Raeesa Ganey [aut] ,
Ruan Buys [aut] ,
Zoe-Mae Adams [aut] ,
Peter Manefeldt [aut]
Maintainer: Sugnet Lubbe <muvisu@sun.ac.za>
Diff between biplotEZ versions 2.0 dated 2024-07-08 and 2.1 dated 2024-09-14
biplotEZ-2.0/biplotEZ/man/plot3D.Rd |only biplotEZ-2.1/biplotEZ/DESCRIPTION | 13 biplotEZ-2.1/biplotEZ/MD5 | 80 biplotEZ-2.1/biplotEZ/NAMESPACE | 3 biplotEZ-2.1/biplotEZ/R/CA.R | 2 biplotEZ-2.1/biplotEZ/R/CVA.R | 147 biplotEZ-2.1/biplotEZ/R/MDS.R | 3 biplotEZ-2.1/biplotEZ/R/PCA.R | 8 biplotEZ-2.1/biplotEZ/R/aesthetics.R | 437 - biplotEZ-2.1/biplotEZ/R/biplot.R | 23 biplotEZ-2.1/biplotEZ/R/calibrate_axes.R |only biplotEZ-2.1/biplotEZ/R/clouds.R | 4 biplotEZ-2.1/biplotEZ/R/more_biplots.R | 2 biplotEZ-2.1/biplotEZ/R/plot2D.R | 175 biplotEZ-2.1/biplotEZ/R/plotting.R | 86 biplotEZ-2.1/biplotEZ/R/utility.R | 3 biplotEZ-2.1/biplotEZ/inst/doc/Biplots_in_1D.html | 8 biplotEZ-2.1/biplotEZ/inst/doc/Biplots_in_3D.html | 54 biplotEZ-2.1/biplotEZ/inst/doc/CA_in_biplotEZ.Rmd | 1 biplotEZ-2.1/biplotEZ/inst/doc/CA_in_biplotEZ.html | 8 biplotEZ-2.1/biplotEZ/inst/doc/Class_separation.Rmd | 5 biplotEZ-2.1/biplotEZ/inst/doc/Class_separation.html | 4072 -------------- biplotEZ-2.1/biplotEZ/inst/doc/MDS.html | 650 -- biplotEZ-2.1/biplotEZ/inst/doc/biplotEZ.Rmd | 5 biplotEZ-2.1/biplotEZ/inst/doc/biplotEZ.html | 70 biplotEZ-2.1/biplotEZ/inst/doc/biplotEZ_enhancements.html | 12 biplotEZ-2.1/biplotEZ/man/AoD.Rd | 6 biplotEZ-2.1/biplotEZ/man/AoD.biplot.Rd | 6 biplotEZ-2.1/biplotEZ/man/CA.Rd | 3 biplotEZ-2.1/biplotEZ/man/CLPs.Rd |only biplotEZ-2.1/biplotEZ/man/CVA.Rd | 3 biplotEZ-2.1/biplotEZ/man/PCA.Rd | 6 biplotEZ-2.1/biplotEZ/man/axes.Rd | 113 biplotEZ-2.1/biplotEZ/man/axes_coordinates.Rd |only biplotEZ-2.1/biplotEZ/man/means.Rd | 52 biplotEZ-2.1/biplotEZ/man/newaxes.Rd | 61 biplotEZ-2.1/biplotEZ/man/newsamples.Rd | 60 biplotEZ-2.1/biplotEZ/man/plot.biplot.Rd | 26 biplotEZ-2.1/biplotEZ/man/samples.Rd | 83 biplotEZ-2.1/biplotEZ/vignettes/CA_in_biplotEZ.Rmd | 1 biplotEZ-2.1/biplotEZ/vignettes/Class_separation.Rmd | 5 biplotEZ-2.1/biplotEZ/vignettes/biplotEZ.Rmd | 5 biplotEZ-2.1/biplotEZ/vignettes/references.bib | 2 43 files changed, 985 insertions(+), 5318 deletions(-)
Title: Workflow for Open Reproducible Code in Science
Description: Create reproducible and transparent research projects in 'R'.
This package is based on the Workflow for Open
Reproducible Code in Science (WORCS), a step-by-step procedure based on best
practices for
Open Science. It includes an 'RStudio' project template, several
convenience functions, and all dependencies required to make your project
reproducible and transparent. WORCS is explained in the tutorial paper
by Van Lissa, Brandmaier, Brinkman, Lamprecht, Struiksma, & Vreede (2021).
<doi:10.3233/DS-210031>.
Author: Caspar J. Van Lissa [aut, cre]
,
Aaron Peikert [aut] ,
Andreas M. Brandmaier [aut]
Maintainer: Caspar J. Van Lissa <c.j.vanlissa@tilburguniversity.edu>
Diff between worcs versions 0.1.14 dated 2023-10-25 and 0.1.15 dated 2024-09-14
DESCRIPTION | 15 +- MD5 | 63 +++++--- NAMESPACE | 1 R/check_installation.R | 4 R/save_load.R | 14 - R/targets.R |only R/update_worcs_package.R |only R/worcs_badge.R | 4 R/worcs_project.R | 132 ++++++++++++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/citation.R | 4 inst/doc/citation.Rmd | 2 inst/doc/citation.html | 13 - inst/doc/endpoints.R | 2 inst/doc/endpoints.html | 2 inst/doc/git_cloud.R | 2 inst/doc/reproduce.R | 2 inst/doc/setup-docker.R | 4 inst/doc/setup-docker.html | 2 inst/doc/setup.R | 2 inst/doc/synthetic_data.R |only inst/doc/synthetic_data.Rmd |only inst/doc/synthetic_data.html |only inst/doc/workflow.R | 4 inst/doc/workflow.Rmd | 2 inst/doc/workflow.html | 6 inst/rstudio/templates/project/resources/_targets.rmd |only inst/rstudio/templates/project/worcs.dcf | 11 + man/add_targets.Rd |only man/figures |only man/worcs_project.Rd | 4 tests/testthat/helper_usethis.R |only tests/testthat/test-checksum_markdown.R | 4 tests/testthat/test-targets.R |only vignettes/citation.Rmd | 2 vignettes/synthetic_data.Rmd |only vignettes/workflow.Rmd | 2 38 files changed, 201 insertions(+), 102 deletions(-)
Title: An Interface to IMF (International Monetary Fund) Data JSON API
Description: A straightforward interface for accessing the IMF
(International Monetary Fund) data JSON API,
available at <https://data.imf.org/>. This package offers direct access to
the primary API endpoints: Dataflow, DataStructure, and CompactData.
And, it provides an intuitive interface for exploring available
dimensions and attributes, as well as querying individual time-series datasets.
Additionally, the package implements a rate limit on API calls to reduce the
chances of exceeding service limits (limited to 10 calls every 5 seconds)
and encountering response errors.
Author: Pedro Baltazar [aut, cre]
Maintainer: Pedro Baltazar <pedrobtz@gmail.com>
Diff between imf.data versions 0.1.6 dated 2024-07-16 and 0.1.7 dated 2024-09-14
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 8 ++++++++ R/database.R | 25 ++++++++++++++++++------- R/methods.R | 5 ++++- 5 files changed, 38 insertions(+), 16 deletions(-)
Title: Machine Learning Time Series Forecasting
Description: Compute static, onestep and multistep time series forecasts for machine learning models.
Author: Ho Tsung-wu [aut, cre]
Maintainer: Ho Tsung-wu <tsungwu@ntnu.edu.tw>
Diff between iForecast versions 1.0.7 dated 2023-07-01 and 1.0.8 dated 2024-09-14
iForecast-1.0.7/iForecast/R/ttsLSTM.R |only iForecast-1.0.8/iForecast/DESCRIPTION | 18 ++- iForecast-1.0.8/iForecast/MD5 | 22 ++-- iForecast-1.0.8/iForecast/NAMESPACE | 5 - iForecast-1.0.8/iForecast/R/deprecate.R |only iForecast-1.0.8/iForecast/R/ttsAutoML.R | 8 + iForecast-1.0.8/iForecast/R/ttsCaret.R | 2 iForecast-1.0.8/iForecast/R/ttsPredict.R | 44 ++++----- iForecast-1.0.8/iForecast/man/iForecast.Rd | 18 +-- iForecast-1.0.8/iForecast/man/tts.autoML.Rd |only iForecast-1.0.8/iForecast/man/tts.caret.Rd |only iForecast-1.0.8/iForecast/man/ttsAutoML.Rd | 91 +----------------- iForecast-1.0.8/iForecast/man/ttsCaret.Rd | 135 +--------------------------- iForecast-1.0.8/iForecast/man/ttsLSTM.Rd | 113 ----------------------- 14 files changed, 78 insertions(+), 378 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-10 1.0-1
Title: Bayesian Cure Rate Modeling for Time-to-Event Data
Description: A fully Bayesian approach in order to estimate a general family of cure rate models under the presence of covariates, see Papastamoulis and Milienos (2024) <doi:10.1007/s11749-024-00942-w>. The promotion time can be modelled (a) parametrically using typical distributional assumptions for time to event data (including the Weibull, Exponential, Gompertz, log-Logistic distributions), or (b) semiparametrically using finite mixtures of distributions. In both cases, user-defined families of distributions are allowed under some specific requirements. Posterior inference is carried out by constructing a Metropolis-coupled Markov chain Monte Carlo (MCMC) sampler, which combines Gibbs sampling for the latent cure indicators and Metropolis-Hastings steps with Langevin diffusion dynamics for parameter updates. The main MCMC algorithm is embedded within a parallel tempering scheme by considering heated versions of the target posterior distribution.
Author: Panagiotis Papastamoulis [aut, cre]
,
Fotios Milienos [aut]
Maintainer: Panagiotis Papastamoulis <papapast@yahoo.gr>
Diff between bayesCureRateModel versions 1.1 dated 2024-07-24 and 1.2 dated 2024-09-14
DESCRIPTION | 14 MD5 | 29 NAMESPACE | 7 R/bayesian_cure_rate_model.R | 1181 ++++++++++++++++++++++++++++++++++---- build/partial.rdb |binary data/marriage_dataset.RData |binary data/sim_mix_data.RData |only inst |only man/bayesCureRateModel-package.Rd | 20 man/compute_fdr_tpr.Rd |only man/cure_rate_MC3.Rd | 64 +- man/cure_rate_mcmc.Rd | 9 man/log_user_mixture.Rd |only man/marriage_dataset.Rd | 6 man/plot.bayesCureModel.Rd | 45 - man/predict.bayesCureModel.Rd |only man/residuals.bayesCureModel.Rd |only man/sim_mix_data.Rd |only man/summary.bayesCureModel.Rd | 34 - 19 files changed, 1222 insertions(+), 187 deletions(-)
More information about bayesCureRateModel at CRAN
Permanent link
Title: Multiple Indicator Cluster Survey (MICS) 2017-18 Data for
Punjab, Pakistan
Description: Provides data set and function for exploration of Multiple Indicator Cluster Survey (MICS) 2017-18 data for Punjab, Pakistan. The results of the present survey are critically important for the purposes of SDG monitoring, as the survey produces information on 32 global SDG indicators. The data was collected from 53,840 households selected at the second stage with systematic random sampling out of a sample of 2,692 clusters selected using Probability Proportional to size sampling. Six questionnaires were used in the survey: (1) a household questionnaire to collect basic demographic information on all de jure household members (usual residents), the household, and the dwelling; (2) a water quality testing questionnaire administered in three households in each cluster of the sample; (3) a questionnaire for individual women administered in each household to all women age 15-49 years; (4) a questionnaire for individual men administered in every second household to all men age 15-49 years; (5 [...truncated...]
Author: Muhammad Yaseen [aut, cre]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Diff between PakPMICS2018 versions 1.0.0 dated 2020-01-25 and 1.1.0 dated 2024-09-13
DESCRIPTION | 19 ++++++++--------- MD5 | 42 +++++++++++++++++++------------------- NEWS.md | 6 +++++ R/PakPMICS2018bh.R | 4 +-- R/PakPMICS2018ch.R | 4 +-- R/PakPMICS2018fs.R | 4 +-- R/PakPMICS2018hh.R | 4 +-- R/PakPMICS2018hl.R | 4 +-- R/PakPMICS2018mm.R | 4 +-- R/PakPMICS2018mn.R | 4 +-- R/PakPMICS2018wm.R | 4 +-- README.md | 55 +++++++++++++++++++------------------------------- build/vignette.rds |binary inst/CITATION | 43 +++++++-------------------------------- man/PakPMICS2018bh.Rd | 10 +++++---- man/PakPMICS2018ch.Rd | 10 +++++---- man/PakPMICS2018fs.Rd | 10 +++++---- man/PakPMICS2018hh.Rd | 10 +++++---- man/PakPMICS2018hl.Rd | 10 +++++---- man/PakPMICS2018mm.Rd | 10 +++++---- man/PakPMICS2018mn.Rd | 10 +++++---- man/PakPMICS2018wm.Rd | 10 +++++---- 22 files changed, 129 insertions(+), 148 deletions(-)
Title: Demographic Analysis and Data Manipulation
Description: Perform tasks commonly encountered when
preparing and analysing demographic data.
Some functions are intended for end users, and
others for developers. Includes functions for
working with life tables.
Author: John Bryant [aut, cre],
Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>
Diff between poputils versions 0.3.1 dated 2024-06-12 and 0.3.3 dated 2024-09-13
DESCRIPTION | 8 MD5 | 58 ++-- NAMESPACE | 4 NEWS.md | 44 +++ R/age.R | 201 ++++++++------- R/check-functions.R | 370 ++++++++++++++++++---------- R/cpp11.R | 4 R/lifetab.R | 300 +++++++++++++++-------- R/logit.R | 12 R/poputils-package.R | 39 +-- R/rr3.R |only R/to_matrix.R | 147 ++++------- R/trim_01.R |only README.md | 46 ++- build/vignette.rds |binary inst/doc/poputils.R | 6 inst/doc/poputils.Rmd | 10 inst/doc/poputils.html | 196 ++++++++------- man/check_n.Rd |only man/lifetab.Rd | 12 man/poputils-package.Rd | 40 +-- man/q0_to_m0.Rd |only man/rr3.Rd |only man/trim_01.Rd |only src/cpp11.cpp | 8 src/lifetab.cpp | 29 ++ tests/testthat/test-age.R | 37 ++ tests/testthat/test-check-functions.R | 122 ++++++++- tests/testthat/test-lifetab-src.R | 440 ++++++++++++---------------------- tests/testthat/test-lifetab.R | 193 +++++++++++++- tests/testthat/test-rr3.R |only tests/testthat/test-to_matrix.R | 16 - tests/testthat/test-trim_01.R |only vignettes/poputils.Rmd | 10 34 files changed, 1447 insertions(+), 905 deletions(-)
Title: Analyze, Process, Identify, and Share Raman and (FT)IR Spectra
Description: Raman and (FT)IR spectral analysis tool for plastic particles and
other environmental samples (Cowger et al. 2021,
<doi:10.1021/acs.analchem.1c00123>). With read_any(), Open Specy provides a
single function for reading individual, batch, or map spectral data files
like .asp, .csv, .jdx, .spc, .spa, .0, and .zip. process_spec() simplifies
processing spectra, including smoothing, baseline correction,
range restriction and flattening, intensity conversions, wavenumber
alignment, and min-max normalization. Spectra can be identified in batch
using an onboard reference library (Cowger et al. 2020,
<doi:10.1177/0003702820929064>) using match_spec(). A Shiny app is available
via run_app() or online at <https://openanalysis.org/openspecy/>.
Author: Win Cowger [cre, aut, dtc] ,
Zacharias Steinmetz [aut] ,
Nick Leong [aut] ,
Andrea Faltynkova [aut, dtc] ,
Hannah Sherrod [aut] ,
Andrew B Gray [ctb] ,
Hannah Hapich [ctb] ,
Jennifer Lynch [ctb, dtc] ,
Hannah De Frond [ctb, dtc] ,
Keenan Munno [ctb, [...truncated...]
Maintainer: Win Cowger <wincowger@gmail.com>
Diff between OpenSpecy versions 1.1.0 dated 2024-06-13 and 1.2.0 dated 2024-09-13
OpenSpecy-1.1.0/OpenSpecy/R/share_spec.R |only OpenSpecy-1.1.0/OpenSpecy/man/share_spec.Rd |only OpenSpecy-1.1.0/OpenSpecy/tests/testthat/test-share_spec.R |only OpenSpecy-1.1.0/OpenSpecy/tests/testthat/test-workflows.R |only OpenSpecy-1.2.0/OpenSpecy/DESCRIPTION | 15 OpenSpecy-1.2.0/OpenSpecy/MD5 | 217 OpenSpecy-1.2.0/OpenSpecy/NAMESPACE | 414 OpenSpecy-1.2.0/OpenSpecy/NEWS.md | 464 OpenSpecy-1.2.0/OpenSpecy/R/OpenSpecy-package.R | 86 OpenSpecy-1.2.0/OpenSpecy/R/adj_intens.R | 152 OpenSpecy-1.2.0/OpenSpecy/R/adj_range.R | 242 OpenSpecy-1.2.0/OpenSpecy/R/adj_wave.R | 86 OpenSpecy-1.2.0/OpenSpecy/R/as_OpenSpecy.R | 792 - OpenSpecy-1.2.0/OpenSpecy/R/conform_spec.R | 226 OpenSpecy-1.2.0/OpenSpecy/R/data_norm.R | 218 OpenSpecy-1.2.0/OpenSpecy/R/def_features.R | 612 OpenSpecy-1.2.0/OpenSpecy/R/gen_OpenSpecy.R | 256 OpenSpecy-1.2.0/OpenSpecy/R/human_ts.R | 54 OpenSpecy-1.2.0/OpenSpecy/R/interactive_plots.R | 660 - OpenSpecy-1.2.0/OpenSpecy/R/io_spec.R | 320 OpenSpecy-1.2.0/OpenSpecy/R/make_rel.R | 114 OpenSpecy-1.2.0/OpenSpecy/R/manage_lib.R | 534 OpenSpecy-1.2.0/OpenSpecy/R/manage_na.R | 214 OpenSpecy-1.2.0/OpenSpecy/R/manage_spec.R | 422 OpenSpecy-1.2.0/OpenSpecy/R/match_spec.R | 1050 - OpenSpecy-1.2.0/OpenSpecy/R/process_spec.R | 274 OpenSpecy-1.2.0/OpenSpecy/R/raman_hdpe.R | 66 OpenSpecy-1.2.0/OpenSpecy/R/read_envi.R | 348 OpenSpecy-1.2.0/OpenSpecy/R/read_ext.R | 698 - OpenSpecy-1.2.0/OpenSpecy/R/read_multi.R | 209 OpenSpecy-1.2.0/OpenSpecy/R/read_opus.R | 374 OpenSpecy-1.2.0/OpenSpecy/R/read_opus_raw.R | 2054 +-- OpenSpecy-1.2.0/OpenSpecy/R/run_app.R | 112 OpenSpecy-1.2.0/OpenSpecy/R/sig_noise.R | 284 OpenSpecy-1.2.0/OpenSpecy/R/smooth_intens.R | 362 OpenSpecy-1.2.0/OpenSpecy/R/spec_res.R | 90 OpenSpecy-1.2.0/OpenSpecy/R/split_spec.R | 104 OpenSpecy-1.2.0/OpenSpecy/R/subtr_baseline.R | 300 OpenSpecy-1.2.0/OpenSpecy/R/test_lib.R | 38 OpenSpecy-1.2.0/OpenSpecy/R/zzz.R | 14 OpenSpecy-1.2.0/OpenSpecy/README.md | 214 OpenSpecy-1.2.0/OpenSpecy/build/partial.rdb |binary OpenSpecy-1.2.0/OpenSpecy/build/vignette.rds |binary OpenSpecy-1.2.0/OpenSpecy/inst/doc/sop.R | 644 - OpenSpecy-1.2.0/OpenSpecy/inst/doc/sop.Rmd | 1624 +- OpenSpecy-1.2.0/OpenSpecy/inst/doc/sop.html | 6425 +++++----- OpenSpecy-1.2.0/OpenSpecy/inst/extdata/fitr_nitrocellulose.jdx | 2050 +-- OpenSpecy-1.2.0/OpenSpecy/inst/extdata/raman_hdpe.csv | 1930 +-- OpenSpecy-1.2.0/OpenSpecy/inst/extdata/raman_hdpe.json | 2 OpenSpecy-1.2.0/OpenSpecy/inst/extdata/raman_hdpe.yml | 3882 +++--- OpenSpecy-1.2.0/OpenSpecy/inst/extdata/raman_hdpe_os.csv | 4 OpenSpecy-1.2.0/OpenSpecy/man/adj_intens.Rd | 118 OpenSpecy-1.2.0/OpenSpecy/man/adj_range.Rd | 140 OpenSpecy-1.2.0/OpenSpecy/man/as_OpenSpecy.Rd | 414 OpenSpecy-1.2.0/OpenSpecy/man/conform_spec.Rd | 112 OpenSpecy-1.2.0/OpenSpecy/man/data_norm.Rd | 154 OpenSpecy-1.2.0/OpenSpecy/man/def_features.Rd | 232 OpenSpecy-1.2.0/OpenSpecy/man/gen_OpenSpecy.Rd | 146 OpenSpecy-1.2.0/OpenSpecy/man/human_ts.Rd | 60 OpenSpecy-1.2.0/OpenSpecy/man/interactive_plots.Rd | 292 OpenSpecy-1.2.0/OpenSpecy/man/io_spec.Rd | 171 OpenSpecy-1.2.0/OpenSpecy/man/make_rel.Rd | 98 OpenSpecy-1.2.0/OpenSpecy/man/manage_lib.Rd | 388 OpenSpecy-1.2.0/OpenSpecy/man/manage_na.Rd | 116 OpenSpecy-1.2.0/OpenSpecy/man/manage_spec.Rd | 166 OpenSpecy-1.2.0/OpenSpecy/man/match_spec.Rd | 410 OpenSpecy-1.2.0/OpenSpecy/man/process_spec.Rd | 236 OpenSpecy-1.2.0/OpenSpecy/man/raman_hdpe.Rd | 70 OpenSpecy-1.2.0/OpenSpecy/man/read_envi.Rd | 144 OpenSpecy-1.2.0/OpenSpecy/man/read_ext.Rd | 308 OpenSpecy-1.2.0/OpenSpecy/man/read_multi.Rd | 102 OpenSpecy-1.2.0/OpenSpecy/man/read_opus.Rd | 178 OpenSpecy-1.2.0/OpenSpecy/man/read_opus_raw.Rd | 158 OpenSpecy-1.2.0/OpenSpecy/man/run_app.Rd | 88 OpenSpecy-1.2.0/OpenSpecy/man/sig_noise.Rd | 196 OpenSpecy-1.2.0/OpenSpecy/man/smooth_intens.Rd | 208 OpenSpecy-1.2.0/OpenSpecy/man/spec_res.Rd | 82 OpenSpecy-1.2.0/OpenSpecy/man/split_spec.Rd | 80 OpenSpecy-1.2.0/OpenSpecy/man/subtr_baseline.Rd | 156 OpenSpecy-1.2.0/OpenSpecy/man/test_lib.Rd | 42 OpenSpecy-1.2.0/OpenSpecy/tests/logging/test-logging.R | 12 OpenSpecy-1.2.0/OpenSpecy/tests/testthat.R | 14 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/Rplots.pdf |only OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-adj_intens.R | 58 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-adj_range.R | 130 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-adj_wave.R | 34 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-as_OpenSpecy.R | 228 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-conform_spec.R | 148 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-data_norm.R | 38 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-def_features.R | 452 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-gen_OpenSpecy.R | 64 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-human_ts.R | 12 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-interactive_plots.R | 69 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-io_spec.R | 197 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-make_rel.R | 42 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-manage_lib.R | 126 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-manage_na.R | 82 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-manage_spec.R | 144 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-match_spec.R | 625 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-process_spec.R | 70 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-read_envi.R | 61 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-read_ext.R | 231 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-read_multi.R | 40 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-read_opus.R | 86 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-run_app.R | 22 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-sig_noise.R | 124 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-smooth_intens.R | 82 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-spec_res.R | 10 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-split_spec.R | 22 OpenSpecy-1.2.0/OpenSpecy/tests/testthat/test-subtr_baseline.R | 64 OpenSpecy-1.2.0/OpenSpecy/tests/validation/test-augmented.R | 260 OpenSpecy-1.2.0/OpenSpecy/vignettes/sop.Rmd | 1624 +- 112 files changed, 19747 insertions(+), 19739 deletions(-)
Title: Perform HTTP Requests and Process the Responses
Description: Tools for creating and modifying HTTP requests, then
performing them and processing the results. 'httr2' is a modern
re-imagining of 'httr' that uses a pipe-based interface and solves
more of the problems that API wrapping packages face.
Author: Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd],
Maximilian Girlich [ctb]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between httr2 versions 1.0.3 dated 2024-08-21 and 1.0.4 dated 2024-09-13
DESCRIPTION | 9 - MD5 | 202 ++++++++++++------------ NAMESPACE | 6 NEWS.md | 13 + R/content-type.R | 2 R/curl.R | 2 R/iterate.R | 5 R/multi-req.R | 6 R/oauth-client.R | 2 R/oauth-flow-auth-code.R | 5 R/oauth-flow-client-credentials.R | 3 R/oauth-flow-device.R | 3 R/oauth-flow-jwt.R | 3 R/oauth-flow-password.R | 3 R/oauth-flow-refresh.R | 3 R/req-body.R | 64 ++++--- R/req-cache.R | 43 +++-- R/req-cookies.R | 57 +++++- R/req-perform-connection.R |only R/req-perform-stream.R | 41 ---- R/req-perform.R | 30 ++- R/req-promise.R | 2 R/req-retries.R | 46 +++-- R/req-throttle.R | 2 R/req.R | 13 + R/resp-body.R | 36 +++- R/resp-headers.R | 4 R/resp-stream.R |only R/resp.R | 10 - R/secret.R | 6 R/sequential.R | 4 R/test.R | 2 R/url.R | 8 R/utils.R | 47 +++++ README.md | 9 - inst/doc/httr2.R | 3 inst/doc/httr2.Rmd | 3 inst/doc/httr2.html | 38 ++-- man/multi_req_perform.Rd | 4 man/oauth_client_req_auth.Rd | 2 man/oauth_token_cached.Rd | 2 man/req_auth_basic.Rd | 2 man/req_auth_bearer_token.Rd | 2 man/req_body.Rd | 2 man/req_cache.Rd | 9 - man/req_cookie_preserve.Rd | 46 ++++- man/req_dry_run.Rd | 2 man/req_error.Rd | 2 man/req_method.Rd | 2 man/req_oauth.Rd | 2 man/req_oauth_auth_code.Rd | 7 man/req_oauth_bearer_jwt.Rd | 5 man/req_oauth_client_credentials.Rd | 5 man/req_oauth_device.Rd | 7 man/req_oauth_password.Rd | 7 man/req_oauth_refresh.Rd | 5 man/req_perform.Rd | 2 man/req_perform_connection.Rd |only man/req_perform_iterative.Rd | 5 man/req_perform_parallel.Rd | 4 man/req_perform_promise.Rd | 4 man/req_perform_sequential.Rd | 4 man/req_perform_stream.Rd | 2 man/req_proxy.Rd | 2 man/req_retry.Rd | 29 ++- man/req_template.Rd | 2 man/req_throttle.Rd | 2 man/req_timeout.Rd | 2 man/req_url.Rd | 2 man/req_user_agent.Rd | 2 man/req_verbose.Rd | 2 man/request.Rd | 16 + man/resp_body_raw.Rd | 2 man/resp_check_content_type.Rd | 2 man/resp_content_type.Rd | 2 man/resp_date.Rd | 2 man/resp_headers.Rd | 2 man/resp_link_url.Rd | 2 man/resp_raw.Rd | 2 man/resp_retry_after.Rd | 2 man/resp_status.Rd | 2 man/resp_stream_raw.Rd |only man/resp_url.Rd | 2 man/secrets.Rd | 6 tests/testthat/_snaps/req-body.md | 9 + tests/testthat/_snaps/req-perform-connection.md |only tests/testthat/_snaps/req-retries.md | 18 ++ tests/testthat/_snaps/resp-stream.md |only tests/testthat/_snaps/resp.md | 7 tests/testthat/_snaps/utils.md | 6 tests/testthat/helper-webfakes.R |only tests/testthat/helper.R |only tests/testthat/test-curl.R | 7 tests/testthat/test-oauth-flow-auth-code.R | 14 - tests/testthat/test-req-body.R | 16 + tests/testthat/test-req-cache.R | 4 tests/testthat/test-req-cookies.R | 18 ++ tests/testthat/test-req-perform-connection.R |only tests/testthat/test-req-perform-stream.R | 4 tests/testthat/test-req-perform.R | 90 ++++++++++ tests/testthat/test-req-retries.R | 10 + tests/testthat/test-req-throttle.R | 19 +- tests/testthat/test-resp-body.R | 12 + tests/testthat/test-resp-stream.R |only tests/testthat/test-resp.R | 3 tests/testthat/test-utils.R | 28 ++- vignettes/httr2.Rmd | 3 107 files changed, 837 insertions(+), 385 deletions(-)
Title: Experimental Design and Analysis for Tree Improvement
Description: Provides data sets and R Codes for E.R. Williams, C.E. Harwood and A.C. Matheson (2023). Experimental Design and Analysis for Tree Improvement, CSIRO Publishing.
Author: Muhammad Yaseen [aut, cre, cph]
,
Sami Ullah [aut, ctb],
Kent Eskridge [aut, ctb],
Emlyn Williams [aut, ctb]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Diff between eda4treeR versions 0.6.0 dated 2023-05-01 and 1.1.0 dated 2024-09-13
DESCRIPTION | 19 ++-- MD5 | 116 ++++++++++++++--------------- NEWS.md | 56 +++++++------- R/DataExam2.1.R | 2 R/DataExam2.2.R | 2 R/DataExam3.1.1.R | 9 +- R/DataExam3.1.R | 8 +- R/DataExam4.3.R | 16 ++-- R/DataExam4.4.R | 10 +- R/DataExam5.1.R | 8 +- R/DataExam5.2.R | 8 +- R/DataExam8.2.R | 24 +++--- R/Exam2.1.R | 9 -- R/Exam2.2.R | 13 +-- R/Exam3.1.1.R | 12 +-- R/Exam3.1.R | 76 ++++++++++++++----- R/Exam4.3.1.R | 14 +-- R/Exam4.3.R | 36 +++++---- R/Exam4.4.R | 12 +-- R/Exam5.1.R | 124 ++++++++++++++++++------------- R/Exam5.2.R | 95 +++++++++++++++--------- R/Exam6.2.R | 57 +++++++------- R/Exam8.1.1.R | 154 ++++++++++++++++++++------------------ R/Exam8.1.2.R | 33 +++++--- R/Exam8.1.R | 27 ++++-- R/Exam8.2.R | 126 +++++++++++++++---------------- README.md | 186 +++++++++++++++++++++++------------------------ data/DataExam2.1.RData |binary data/DataExam2.2.RData |binary data/DataExam3.1.1.RData |binary data/DataExam3.1.RData |binary data/DataExam4.3.RData |binary data/DataExam4.4.RData |binary data/DataExam5.1.RData |binary data/DataExam5.2.RData |binary data/DataExam8.2.RData |binary man/DataExam2.1.Rd | 2 man/DataExam2.2.Rd | 2 man/DataExam3.1.1.Rd | 9 +- man/DataExam3.1.Rd | 8 +- man/DataExam4.3.Rd | 16 ++-- man/DataExam4.4.Rd | 10 +- man/DataExam5.1.Rd | 8 +- man/DataExam5.2.Rd | 8 +- man/DataExam8.2.Rd | 24 +++--- man/Exam2.1.Rd | 8 -- man/Exam2.2.Rd | 12 +-- man/Exam3.1.1.Rd | 11 +- man/Exam3.1.Rd | 76 ++++++++++++++----- man/Exam4.3.1.Rd | 13 +-- man/Exam4.3.Rd | 35 +++++--- man/Exam4.4.Rd | 11 +- man/Exam5.1.Rd | 123 ++++++++++++++++++------------- man/Exam5.2.Rd | 92 +++++++++++++++-------- man/Exam6.2.Rd | 56 +++++++------- man/Exam8.1.1.Rd | 33 +++++--- man/Exam8.1.2.Rd | 32 +++++--- man/Exam8.1.Rd | 26 ++++-- man/Exam8.2.Rd | 17 ++-- 59 files changed, 1081 insertions(+), 803 deletions(-)
Title: Diallel Analysis with R
Description: Performs Diallel Analysis with R using Griffing's and Hayman's approaches. Four different Methods (1: Method-I (Parents + F1's + reciprocals); 2: Method-II (Parents and one set of F1's); 3: Method-III (One set of F1's and reciprocals); 4: Method-IV (One set of F1's only)) and two Models (1: Fixed Effects Model; 2: Random Effects Model) can be applied using Griffing's approach.
Author: Muhammad Yaseen [aut, cre, cph]
,
Kent Eskridge [ctb, aut],
Pedro Barbosa [ctb, aut],
Yuhang Guo [ctb, aut]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Diff between DiallelAnalysisR versions 0.5.0 dated 2023-03-31 and 0.6.0 dated 2024-09-13
DESCRIPTION | 23 +++---- MD5 | 6 - NEWS.md | 56 +++++++++-------- README.md | 197 +++++++++++++++++++++++++++++------------------------------- 4 files changed, 142 insertions(+), 140 deletions(-)
More information about DiallelAnalysisR at CRAN
Permanent link
Title: 'Java' Environments for R Projects
Description: Quickly install 'Java Development Kit (JDK)' without
administrative privileges and set environment variables in current R
session or project to solve common issues with 'Java' environment
management in 'R'. Recommended to users of 'Java'/'rJava'-dependent
'R' packages such as 'r5r', 'opentripplanner', 'xlsx', 'openNLP',
'rWeka', 'RJDBC', 'tabulapdf', and many more. 'rJavaEnv' prevents
common problems like 'Java' not found, 'Java' version conflicts,
missing 'Java' installations, and the inability to install 'Java' due
to lack of administrative privileges. 'rJavaEnv' automates the
download, installation, and setup of the 'Java' on a per-project basis
by setting the relevant 'JAVA_HOME' in the current 'R' session or the
current working directory (via '.Rprofile', with the user's consent).
Similar to what 'renv' does for 'R' packages, 'rJavaEnv' allows
different 'Java' versions to be used across different projects, but
can also be configured to allow multiple versions within the same
proj [...truncated...]
Author: Egor Kotov [aut, cre, cph] ,
Mauricio Vargas [ctb] ,
Hadley Wickham [ctb]
Maintainer: Egor Kotov <kotov.egor@gmail.com>
Diff between rJavaEnv versions 0.2.1 dated 2024-09-03 and 0.2.2 dated 2024-09-13
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NAMESPACE | 1 + NEWS.md | 6 ++++++ R/java_env.R | 8 +++++--- README.md | 2 +- inst/schemaorg.json | 2 +- 7 files changed, 23 insertions(+), 14 deletions(-)
Title: Extensions to 'ggplot2' for Radiation Spectra
Description: Additional annotations, stats, geoms and scales for plotting
"light" spectra with 'ggplot2', together with specializations of ggplot()
and autoplot() methods for spectral data and waveband definitions
stored in objects of classes defined in package 'photobiology'. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggspectra versions 0.3.12 dated 2023-10-21 and 0.3.13 dated 2024-09-13
ggspectra-0.3.12/ggspectra/inst/doc/userguide3-data-manip.R |only ggspectra-0.3.12/ggspectra/inst/doc/userguide3-data-manip.Rmd |only ggspectra-0.3.12/ggspectra/inst/doc/userguide3-data-manip.html |only ggspectra-0.3.12/ggspectra/vignettes/userguide3-data-manip.Rmd |only ggspectra-0.3.13/ggspectra/DESCRIPTION | 14 ggspectra-0.3.13/ggspectra/MD5 | 158 - ggspectra-0.3.13/ggspectra/NEWS.md | 31 ggspectra-0.3.13/ggspectra/R/autoplot-calibration-spct.R | 116 ggspectra-0.3.13/ggspectra/R/autoplot-cps-spct.r | 152 - ggspectra-0.3.13/ggspectra/R/autoplot-filter-spct.r | 425 +-- ggspectra-0.3.13/ggspectra/R/autoplot-generic-spct.R | 87 ggspectra-0.3.13/ggspectra/R/autoplot-raw-spct.r | 113 ggspectra-0.3.13/ggspectra/R/autoplot-response-spct.r | 128 ggspectra-0.3.13/ggspectra/R/autoplot-source-spct.r | 181 - ggspectra-0.3.13/ggspectra/R/autotitle.R | 211 + ggspectra-0.3.13/ggspectra/R/axis-labels-texts.R | 159 - ggspectra-0.3.13/ggspectra/R/axis-utils-calibration-spct.R | 41 ggspectra-0.3.13/ggspectra/R/axis-utils-cps-spct.R | 41 ggspectra-0.3.13/ggspectra/R/axis-utils-filter-spct.R | 283 +- ggspectra-0.3.13/ggspectra/R/axis-utils-raw-spct.R | 45 ggspectra-0.3.13/ggspectra/R/axis-utils-response-spct.R | 148 - ggspectra-0.3.13/ggspectra/R/axis-utils-source-spct.R | 99 ggspectra-0.3.13/ggspectra/R/axis-utils-wlength.R | 180 + ggspectra-0.3.13/ggspectra/R/ggplot-methods.R | 27 ggspectra-0.3.13/ggspectra/README.md | 18 ggspectra-0.3.13/ggspectra/build/partial.rdb |binary ggspectra-0.3.13/ggspectra/build/vignette.rds |binary ggspectra-0.3.13/ggspectra/inst/doc/userguide-0-r4p-introduction.html | 4 ggspectra-0.3.13/ggspectra/inst/doc/userguide1-grammar.R | 8 ggspectra-0.3.13/ggspectra/inst/doc/userguide1-grammar.Rmd | 16 ggspectra-0.3.13/ggspectra/inst/doc/userguide1-grammar.html | 1296 +++++----- ggspectra-0.3.13/ggspectra/inst/doc/userguide2-autoplot-methods.R | 47 ggspectra-0.3.13/ggspectra/inst/doc/userguide2-autoplot-methods.Rmd | 99 ggspectra-0.3.13/ggspectra/inst/doc/userguide2-autoplot-methods.html | 472 ++- ggspectra-0.3.13/ggspectra/man/A_label.Rd | 13 ggspectra-0.3.13/ggspectra/man/Afr_label.Rd | 22 ggspectra-0.3.13/ggspectra/man/O_plot.Rd | 5 ggspectra-0.3.13/ggspectra/man/Rfr_label.Rd | 17 ggspectra-0.3.13/ggspectra/man/Tfr_label.Rd | 19 ggspectra-0.3.13/ggspectra/man/autoplot.calibration_spct.Rd | 90 ggspectra-0.3.13/ggspectra/man/autoplot.cps_spct.Rd | 89 ggspectra-0.3.13/ggspectra/man/autoplot.filter_spct.Rd | 124 ggspectra-0.3.13/ggspectra/man/autoplot.generic_spct.Rd | 76 ggspectra-0.3.13/ggspectra/man/autoplot.object_spct.Rd | 111 ggspectra-0.3.13/ggspectra/man/autoplot.raw_spct.Rd | 88 ggspectra-0.3.13/ggspectra/man/autoplot.reflector_spct.Rd | 96 ggspectra-0.3.13/ggspectra/man/autoplot.response_spct.Rd | 96 ggspectra-0.3.13/ggspectra/man/autoplot.source_spct.Rd | 110 ggspectra-0.3.13/ggspectra/man/autotitle.Rd | 30 ggspectra-0.3.13/ggspectra/man/axis_labels.Rd | 27 ggspectra-0.3.13/ggspectra/man/counts_label.Rd | 6 ggspectra-0.3.13/ggspectra/man/cps_label.Rd | 6 ggspectra-0.3.13/ggspectra/man/cps_plot.Rd | 5 ggspectra-0.3.13/ggspectra/man/e_plot.Rd | 13 ggspectra-0.3.13/ggspectra/man/e_rsp_plot.Rd | 5 ggspectra-0.3.13/ggspectra/man/figures/README-example0-1.png |binary ggspectra-0.3.13/ggspectra/man/figures/README-example1-1.png |binary ggspectra-0.3.13/ggspectra/man/figures/README-example2-1.png |binary ggspectra-0.3.13/ggspectra/man/generic_plot.Rd | 9 ggspectra-0.3.13/ggspectra/man/multipliers_label.Rd | 8 ggspectra-0.3.13/ggspectra/man/q_plot.Rd | 5 ggspectra-0.3.13/ggspectra/man/q_rsp_plot.Rd | 5 ggspectra-0.3.13/ggspectra/man/raw_plot.Rd | 5 ggspectra-0.3.13/ggspectra/man/s.e.irrad_label.Rd | 28 ggspectra-0.3.13/ggspectra/man/s.e.response_label.Rd | 15 ggspectra-0.3.13/ggspectra/man/scale_x_energy_eV_continuous.Rd | 11 ggspectra-0.3.13/ggspectra/man/scale_x_frequency_continuous.Rd | 7 ggspectra-0.3.13/ggspectra/man/scale_x_wavenumber_continuous.Rd | 7 ggspectra-0.3.13/ggspectra/man/scale_x_wl_continuous.Rd | 7 ggspectra-0.3.13/ggspectra/man/scale_y_A_continuous.Rd | 20 ggspectra-0.3.13/ggspectra/man/scale_y_Afr_continuous.Rd | 20 ggspectra-0.3.13/ggspectra/man/scale_y_Rfr_continuous.Rd | 33 ggspectra-0.3.13/ggspectra/man/scale_y_Tfr_continuous.Rd | 33 ggspectra-0.3.13/ggspectra/man/scale_y_counts_continuous.Rd | 10 ggspectra-0.3.13/ggspectra/man/scale_y_cps_continuous.Rd | 7 ggspectra-0.3.13/ggspectra/man/scale_y_multipliers_continuous.Rd | 7 ggspectra-0.3.13/ggspectra/man/scale_y_s.e.irrad_continuous.Rd | 19 ggspectra-0.3.13/ggspectra/man/scale_y_s.e.response_continuous.Rd | 19 ggspectra-0.3.13/ggspectra/man/sec_axis_w_number.Rd | 33 ggspectra-0.3.13/ggspectra/man/w_length_label.Rd | 27 ggspectra-0.3.13/ggspectra/vignettes/userguide1-grammar.Rmd | 16 ggspectra-0.3.13/ggspectra/vignettes/userguide2-autoplot-methods.Rmd | 99 82 files changed, 3651 insertions(+), 2446 deletions(-)
Title: Boldness-Recalibration of Binary Events
Description: Boldness-recalibration maximally spreads out probability predictions while maintaining a user specified level of calibration, facilitated the brcal() function. Supporting functions to assess calibration via Bayesian and Frequentist approaches, Maximum Likelihood Estimator (MLE) recalibration, Linear in Log Odds (LLO)-adjust via any specified parameters, and visualize results are also provided. Methodological details can be found in Guthrie & Franck (2024) <doi:10.1080/00031305.2024.2339266>.
Author: Adeline P. Guthrie [aut, cre] ,
Christopher T. Franck [aut]
Maintainer: Adeline P. Guthrie <apguthrie47@gmail.com>
Diff between BRcal versions 0.0.4 dated 2024-06-25 and 1.0.0 dated 2024-09-13
BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br90_ac47b5dd88ca2583e3d44e9682cbe57f.RData |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br90_ac47b5dd88ca2583e3d44e9682cbe57f.rdb |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br90_ac47b5dd88ca2583e3d44e9682cbe57f.rdx |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br90_tau_0145ca272a70355028da45bd15f5589a.RData |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br90_tau_0145ca272a70355028da45bd15f5589a.rdb |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br90_tau_0145ca272a70355028da45bd15f5589a.rdx |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br95_09588f0c17d7957638d385fbffa61064.RData |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br95_09588f0c17d7957638d385fbffa61064.rdb |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br95_09588f0c17d7957638d385fbffa61064.rdx |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br95_2_4eb1a9e9235c9c6ed392a27e3d820a98.RData |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br95_2_4eb1a9e9235c9c6ed392a27e3d820a98.rdb |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br95_2_4eb1a9e9235c9c6ed392a27e3d820a98.rdx |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br95_3_4701cfca89cc7ddfb92daf695ef21c15.RData |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br95_3_4701cfca89cc7ddfb92daf695ef21c15.rdb |only BRcal-0.0.4/BRcal/vignettes/hockey_vignette_cache/html/br95_3_4701cfca89cc7ddfb92daf695ef21c15.rdx |only BRcal-1.0.0/BRcal/DESCRIPTION | 12 BRcal-1.0.0/BRcal/MD5 | 57 +-- BRcal-1.0.0/BRcal/NAMESPACE | 2 BRcal-1.0.0/BRcal/R/boldness_recalib.R | 42 -- BRcal-1.0.0/BRcal/R/data.R | 57 ++- BRcal-1.0.0/BRcal/R/plotting_functions.R | 161 ++++++---- BRcal-1.0.0/BRcal/README.md | 2 BRcal-1.0.0/BRcal/build/partial.rdb |only BRcal-1.0.0/BRcal/data/foreclosure.rda |only BRcal-1.0.0/BRcal/inst/doc/hockey_vignette.R | 27 + BRcal-1.0.0/BRcal/inst/doc/hockey_vignette.Rmd | 44 +- BRcal-1.0.0/BRcal/inst/doc/hockey_vignette.html | 145 +++++---- BRcal-1.0.0/BRcal/man/foreclosure.Rd |only BRcal-1.0.0/BRcal/man/lineplot.Rd | 27 + BRcal-1.0.0/BRcal/man/plot_params.Rd | 17 - BRcal-1.0.0/BRcal/vignettes/hockey_vignette.Rmd | 44 +- BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br90_833624141bc7c2f984bd2a2aa5589f83.RData |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br90_833624141bc7c2f984bd2a2aa5589f83.rdb |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br90_833624141bc7c2f984bd2a2aa5589f83.rdx |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br90_tau_5cbcbb517f5ea9a6a92958ce86c80468.RData |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br90_tau_5cbcbb517f5ea9a6a92958ce86c80468.rdb |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br90_tau_5cbcbb517f5ea9a6a92958ce86c80468.rdx |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br95_2_bc84195f5545bbeeb9459ba87cee4579.RData |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br95_2_bc84195f5545bbeeb9459ba87cee4579.rdb |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br95_2_bc84195f5545bbeeb9459ba87cee4579.rdx |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br95_3_a15138f2ae67678b519d05efb23146d1.RData |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br95_3_a15138f2ae67678b519d05efb23146d1.rdb |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br95_3_a15138f2ae67678b519d05efb23146d1.rdx |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br95_49c34b170b17be939d8b4874d4c661aa.RData |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br95_49c34b170b17be939d8b4874d4c661aa.rdb |only BRcal-1.0.0/BRcal/vignettes/hockey_vignette_cache/html/br95_49c34b170b17be939d8b4874d4c661aa.rdx |only 46 files changed, 387 insertions(+), 250 deletions(-)
More information about timeSeriesDataSets at CRAN
Permanent link
More information about power.transform at CRAN
Permanent link
Title: Manipulate Date, POSIXct and hms Vectors
Description: Manipulates date ('Date'), date time ('POSIXct') and time
('hms') vectors. Date/times are considered discrete and are floored
whenever encountered. Times are wrapped and time zones are maintained
unless explicitly altered by the user.
Author: Joe Thorley [aut] ,
Ayla Pearson [aut, cre] ,
Poisson Consulting [cph, fnd]
Maintainer: Ayla Pearson <ayla@poissonconsulting.ca>
Diff between dttr2 versions 0.5.0 dated 2023-11-14 and 0.5.1 dated 2024-09-13
dttr2-0.5.0/dttr2/R/namespace.R |only dttr2-0.5.1/dttr2/DESCRIPTION | 13 +++---- dttr2-0.5.1/dttr2/LICENSE | 4 +- dttr2-0.5.1/dttr2/MD5 | 51 ++++++++++++++--------------- dttr2-0.5.1/dttr2/NAMESPACE | 5 ++ dttr2-0.5.1/dttr2/NEWS.md | 7 +++ dttr2-0.5.1/dttr2/R/complete.R | 6 +-- dttr2-0.5.1/dttr2/R/dttr2-package.R | 3 - dttr2-0.5.1/dttr2/R/excel_to_date_time.R | 2 - dttr2-0.5.1/dttr2/R/internal.R | 3 + dttr2-0.5.1/dttr2/R/utils.R | 2 + dttr2-0.5.1/dttr2/README.md | 9 ++--- dttr2-0.5.1/dttr2/man/dtt_adjust_units.Rd | 4 +- dttr2-0.5.1/dttr2/man/dtt_date.Rd | 2 - dttr2-0.5.1/dttr2/man/dtt_date_time.Rd | 2 - dttr2-0.5.1/dttr2/man/dtt_days_in_month.Rd | 4 +- dttr2-0.5.1/dttr2/man/dtt_days_in_year.Rd | 4 +- dttr2-0.5.1/dttr2/man/dtt_daytt.Rd | 4 +- dttr2-0.5.1/dttr2/man/dtt_excel_to_date.Rd | 4 +- dttr2-0.5.1/dttr2/man/dtt_floor.Rd | 2 - dttr2-0.5.1/dttr2/man/dtt_floored.Rd | 2 - dttr2-0.5.1/dttr2/man/dtt_sys_time.Rd | 4 +- dttr2-0.5.1/dttr2/man/dtt_time.Rd | 6 +-- dttr2-0.5.1/dttr2/man/dttr2-package.Rd | 3 + dttr2-0.5.1/dttr2/man/is_date_time.Rd | 4 +- dttr2-0.5.1/dttr2/tests/spelling.R | 9 +++-- dttr2-0.5.1/dttr2/tests/testthat.R | 8 ++++ 27 files changed, 98 insertions(+), 69 deletions(-)
Title: EcoPhyloMapper
Description: Facilitates the aggregation of species' geographic ranges from vector or raster spatial data, and that enables the calculation of various morphological and phylogenetic community metrics across geography. Citation: Title, PO, DL Swiderski and ML Zelditch (2022) <doi:10.1111/2041-210X.13914>.
Author: Pascal Title [aut, cre] ,
Donald Swiderski [aut],
Miriam Zelditch [aut]
Maintainer: Pascal Title <pascal.title@stonybrook.edu>
Diff between epm versions 1.1.2 dated 2023-12-19 and 1.1.3 dated 2024-09-13
DESCRIPTION | 8 +-- MD5 | 24 +++++------ R/addTraits.R | 4 + R/createEPMgrid.R | 3 + R/customBetaDiv.R | 2 R/epm-package.R | 3 - R/gridMetrics.R | 111 +++++++++++++++++++++++++++++++++++++++++++-------- R/tableFromEpmGrid.R | 29 +++++++++++++ build/partial.rdb |binary man/createEPMgrid.Rd | 2 man/customBetaDiv.Rd | 2 man/epm.Rd | 9 ++++ man/gridMetrics.Rd | 15 +++++- 13 files changed, 173 insertions(+), 39 deletions(-)
Title: Nonparametric Bootstrap Test with Pooled Resampling
Description: Addressing crucial research questions often necessitates a small
sample size due to factors such as distinctive target populations, rarity
of the event under study, time and cost constraints, ethical concerns, or
group-level unit of analysis. Many readily available analytic methods,
however, do not accommodate small sample sizes, and the choice of the best
method can be unclear. The 'npboottprm' package enables the execution of
nonparametric bootstrap tests with pooled resampling to help fill this gap.
Grounded in the statistical methods for small sample size studies detailed
in Dwivedi, Mallawaarachchi, and Alvarado (2017) <doi:10.1002/sim.7263>, the
package facilitates a range of statistical tests, encompassing independent
t-tests, paired t-tests, and one-way Analysis of Variance (ANOVA) F-tests.
The nonparboot() function undertakes essential computations, yielding
detailed outputs which include test statistics, effect sizes, confidence
intervals, and bootstrap distributions. F [...truncated...]
Author: Mackson Ncube [aut, cre],
mightymetrika, LLC [cph, fnd]
Maintainer: Mackson Ncube <macksonncube.stats@gmail.com>
Diff between npboottprm versions 0.3.1 dated 2024-07-16 and 0.3.2 dated 2024-09-13
npboottprm-0.3.1/npboottprm/NEWS.md |only npboottprm-0.3.1/npboottprm/man/format_citation.Rd |only npboottprm-0.3.1/npboottprm/man/handle_null.Rd |only npboottprm-0.3.1/npboottprm/man/text_to_vector.Rd |only npboottprm-0.3.2/npboottprm/DESCRIPTION | 12 npboottprm-0.3.2/npboottprm/MD5 | 28 npboottprm-0.3.2/npboottprm/R/app.R | 39 npboottprm-0.3.2/npboottprm/R/replext.R | 204 +- npboottprm-0.3.2/npboottprm/R/replext_helpers.R | 150 - npboottprm-0.3.2/npboottprm/R/replext_pgsql.R | 175 - npboottprm-0.3.2/npboottprm/R/replext_t2.R | 5 npboottprm-0.3.2/npboottprm/R/replext_t4.R | 1008 +++++----- npboottprm-0.3.2/npboottprm/R/replext_t5.R | 652 +++--- npboottprm-0.3.2/npboottprm/R/replext_ts2.R | 977 ++++----- npboottprm-0.3.2/npboottprm/man/replext_pgsql.Rd | 146 - npboottprm-0.3.2/npboottprm/tests/testthat/test-replext_t2.R | 30 npboottprm-0.3.2/npboottprm/tests/testthat/test-replext_ts2.R | 10 17 files changed, 1615 insertions(+), 1821 deletions(-)
Title: Deconvolution of Bulk RNA-Seq Data Based on Deep Learning
Description: Deconvolution of bulk RNA-Seq data using context-specific deconvolution models based on Deep Neural Networks using scRNA-Seq data as input. These models are able to make accurate estimates of the cell composition of bulk RNA-Seq samples from the same context using the advances provided by Deep Learning and the meaningful information provided by scRNA-Seq data. See Torroja and Sanchez-Cabo (2019) <doi:10.3389/fgene.2019.00978> for more details.
Author: Diego Mananes [aut, cre] ,
Carlos Torroja [aut] ,
Fatima Sanchez-Cabo [aut]
Maintainer: Diego Mananes <dmananesc@cnic.es>
Diff between digitalDLSorteR versions 1.0.1 dated 2024-02-07 and 1.1.0 dated 2024-09-13
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More information about digitalDLSorteR at CRAN
Permanent link
Title: Tools for Handling Indices and Proportions in Small Area
Estimation
Description: It allows for mapping proportions and indicators defined on the unit interval. It implements Beta-based small area methods comprising the classical Beta regression models, the Flexible Beta model and Zero and/or One Inflated extensions (Janicki 2020 <doi:10.1080/03610926.2019.1570266>). Such methods, developed within a Bayesian framework through Stan <https://mc-stan.org/>, come equipped with a set of diagnostics and complementary tools, visualizing and exporting functions. A Shiny application with a user-friendly interface can be launched to further simplify the process. For further details, refer to De Nicolò and Gardini (2024 <doi:10.18637/jss.v108.i01>).
Author: Silvia De Nicolo [aut, cre] ,
Aldo Gardini [aut]
Maintainer: Silvia De Nicolo <silvia.denicolo@unibo.it>
Diff between tipsae versions 1.0.2 dated 2024-07-30 and 1.0.3 dated 2024-09-13
DESCRIPTION | 10 - MD5 | 35 ++-- R/fit_sae.R | 2 build/partial.rdb |binary inst/doc/tipsae_vignette.pdf |binary inst/shiny_tipsae/server_files/data_load_server.R | 4 inst/shiny_tipsae/server_files/plots/data_summary_plot_map.R | 7 inst/shiny_tipsae/server_files/plots/results_estimates_map.R | 5 inst/shiny_tipsae/server_files/plots/results_raneff_map_spat.R | 5 inst/shiny_tipsae/server_files/plots/results_raneff_map_temp.R | 5 inst/shiny_tipsae/server_files/plots/results_raneff_map_unstr.R | 5 inst/shiny_tipsae/server_files/plots/results_summary_map_resid.R | 5 inst/shiny_tipsae/server_files/results_estimates_server.R | 4 inst/shiny_tipsae/ui_files/results_estimates.R | 4 inst/shiny_tipsae/www/complement_theme.css | 1 inst/stan/include/transf_par_ZIBalt.stan | 4 man/fit_sae.Rd | 2 src/stanExports_global.h | 80 +++++----- vignettes/tipsae_vignette_output.pdf |only 19 files changed, 91 insertions(+), 87 deletions(-)
Title: Spatial Dependence: Weighting Schemes, Statistics
Description: A collection of functions to create spatial weights matrix
objects from polygon 'contiguities', from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial 'autocorrelation',
including global 'Morans I' and 'Gearys C' proposed by 'Cliff' and 'Ord'
(1973, ISBN: 0850860369) and (1981, ISBN: 0850860814), 'Hubert/Mantel'
general cross product statistic, Empirical Bayes estimates and
'Assunção/Reis' (1999) <doi:10.1002/(SICI)1097-0258(19990830)18:16%3C2147::AID-SIM179%3E3.0.CO;2-I> Index, 'Getis/Ord' G ('Getis' and 'Ord' 1992)
<doi:10.1111/j.1538-4632.1992.tb00261.x> and multicoloured
join count statistics, 'APLE' ('Li 'et al.' )
<doi:10.1111/j.1538-4632.2007.00708.x>, local 'Moran's I', 'Gearys C'
('Anselin' 1995) <doi:10.1111/j.1538-4632.1995.tb00338.x> and
'Getis/Ord' G ('Ord' and 'Getis' 1995)
< [...truncated...]
Author: Roger Bivand [cre, aut] ,
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assuncao [ctb],
Anil Bera [ctb],
Olaf Berke [ctb],
F. Guillaume Blanchet [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Steph [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spdep versions 1.3-5 dated 2024-06-10 and 1.3-6 dated 2024-09-13
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Title: Interpolation From C
Description: Simple interpolation methods designed to be used from C
code. Supports constant, linear and spline interpolation. An R
wrapper is included but this package is primarily designed to be
used from C code using 'LinkingTo'. The spline calculations are
classical cubic interpolation, e.g., Forsythe, Malcolm and Moler
(1977) <ISBN: 9780131653320>.
Author: Rich FitzJohn [aut, cre],
Imperial College of Science, Technology and Medicine [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between cinterpolate versions 1.0.1 dated 2023-11-29 and 1.0.2 dated 2024-09-13
DESCRIPTION | 6 +++--- LICENSE | 2 +- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/cinterpolate.html | 4 ++-- src/interpolate.c | 16 ++++++++-------- 6 files changed, 19 insertions(+), 19 deletions(-)
Title: Linear Predictive Models Based on the LIBLINEAR C/C++ Library
Description: A wrapper around the LIBLINEAR C/C++ library for machine
learning (available at
<https://www.csie.ntu.edu.tw/~cjlin/liblinear/>). LIBLINEAR is
a simple library for solving large-scale regularized linear
classification and regression. It currently supports
L2-regularized classification (such as logistic regression,
L2-loss linear SVM and L1-loss linear SVM) as well as
L1-regularized classification (such as L2-loss linear SVM and
logistic regression) and L2-regularized support vector
regression (with L1- or L2-loss). The main features of
LiblineaR include multi-class classification (one-vs-the rest,
and Crammer & Singer method), cross validation for model
selection, probability estimates (logistic regression only) or
weights for unbalanced data. The estimation of the models is
particularly fast as compared to other libraries.
Author: Thibault Helleputte [cre, aut, cph],
Jerome Paul [aut],
Pierre Gramme [aut]
Maintainer: Thibault Helleputte <thibault.helleputte@dnalytics.com>
Diff between LiblineaR versions 2.10-23 dated 2023-12-11 and 2.10-24 dated 2024-09-13
DESCRIPTION | 9 +++--- MD5 | 12 ++++----- NAMESPACE | 2 - NEWS | 3 ++ src/linear.cpp | 68 ++++++++++++++++++++++++++-------------------------- src/predictLinear.c | 10 +++---- src/trainLinear.c | 10 +++---- 7 files changed, 57 insertions(+), 57 deletions(-)
Title: Descriptive Analysis by Groups
Description: Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Author: Isaac Subirana [aut, cre] ,
Joan Salvador [ctb]
Maintainer: Isaac Subirana <isubirana@imim.es>
Diff between compareGroups versions 4.8.0 dated 2024-01-29 and 4.9.0 dated 2024-09-13
compareGroups-4.8.0/compareGroups/inst/app/rsconnect |only compareGroups-4.8.0/compareGroups/vignettes/file20385ed07b92.html |only compareGroups-4.8.0/compareGroups/vignettes/file4b40486364bd.html |only compareGroups-4.9.0/compareGroups/DESCRIPTION | 12 compareGroups-4.9.0/compareGroups/MD5 | 94 - compareGroups-4.9.0/compareGroups/NAMESPACE | 1 compareGroups-4.9.0/compareGroups/NEWS.md | 8 compareGroups-4.9.0/compareGroups/R/chisq.test2.R | 7 compareGroups-4.9.0/compareGroups/R/compare.i.R | 6 compareGroups-4.9.0/compareGroups/R/compareGroups.R | 12 compareGroups-4.9.0/compareGroups/R/compareGroups.fit.R | 4 compareGroups-4.9.0/compareGroups/R/createTable.R | 5 compareGroups-4.9.0/compareGroups/R/descrTable.R | 4 compareGroups-4.9.0/compareGroups/R/export2csv.R | 8 compareGroups-4.9.0/compareGroups/R/export2html.R | 8 compareGroups-4.9.0/compareGroups/R/export2latex.cbind.createTable.R | 8 compareGroups-4.9.0/compareGroups/R/export2latex.createTable.R | 8 compareGroups-4.9.0/compareGroups/R/export2md.R | 30 compareGroups-4.9.0/compareGroups/R/export2mdcbind.R | 19 compareGroups-4.9.0/compareGroups/R/export2mdword.R | 6 compareGroups-4.9.0/compareGroups/R/export2mdwordcbind.R | 17 compareGroups-4.9.0/compareGroups/R/export2xls.R | 8 compareGroups-4.9.0/compareGroups/R/format2.R | 12 compareGroups-4.9.0/compareGroups/R/prepare.r | 10 compareGroups-4.9.0/compareGroups/R/print.cbind.createTable.R | 10 compareGroups-4.9.0/compareGroups/R/print.createTable.R | 8 compareGroups-4.9.0/compareGroups/R/table.i.R | 6 compareGroups-4.9.0/compareGroups/build/vignette.rds |binary compareGroups-4.9.0/compareGroups/inst/app/global.R | 8 compareGroups-4.9.0/compareGroups/inst/app/server.R | 20 compareGroups-4.9.0/compareGroups/inst/app/ui.R | 34 compareGroups-4.9.0/compareGroups/inst/app/www/ReGiCor.jpg |only compareGroups-4.9.0/compareGroups/inst/app/www/ciberCV.png |only compareGroups-4.9.0/compareGroups/inst/app/www/datarus.jpg |only compareGroups-4.9.0/compareGroups/inst/app/www/imim.png |only compareGroups-4.9.0/compareGroups/inst/doc/compareGroups_vignette.R | 92 - compareGroups-4.9.0/compareGroups/inst/doc/compareGroups_vignette.Rmd | 30 compareGroups-4.9.0/compareGroups/inst/doc/compareGroups_vignette.html | 726 +++++----- compareGroups-4.9.0/compareGroups/man/compareGroups-internal.Rd | 22 compareGroups-4.9.0/compareGroups/man/compareGroups-package.Rd | 4 compareGroups-4.9.0/compareGroups/man/compareGroups.Rd | 7 compareGroups-4.9.0/compareGroups/man/createTable.Rd | 11 compareGroups-4.9.0/compareGroups/man/descrTable.Rd | 8 compareGroups-4.9.0/compareGroups/man/export2csv.Rd | 7 compareGroups-4.9.0/compareGroups/man/export2html.Rd | 7 compareGroups-4.9.0/compareGroups/man/export2latex.Rd | 10 compareGroups-4.9.0/compareGroups/man/export2md.Rd | 10 compareGroups-4.9.0/compareGroups/man/export2xls.Rd | 4 compareGroups-4.9.0/compareGroups/man/figures/var1age.pdf |binary compareGroups-4.9.0/compareGroups/man/figures/var1sex.pdf |binary compareGroups-4.9.0/compareGroups/vignettes/compareGroups_vignette.Rmd | 30 51 files changed, 705 insertions(+), 636 deletions(-)
Title: Spatial Dependence for Simple Features
Description: An interface to 'spdep' to integrate with 'sf' objects and the 'tidyverse'.
Author: Josiah Parry [aut] ,
Dexter Locke [aut, cre]
Maintainer: Dexter Locke <dexter.locke@gmail.com>
Diff between sfdep versions 0.2.4 dated 2024-02-20 and 0.2.5 dated 2024-09-13
DESCRIPTION | 12 +++++----- MD5 | 13 +++++------ R/spacetime-constructor.R | 4 +-- R/spacetime-methods.R | 2 - R/utils-set-operations.R | 3 ++ build/partial.rdb |binary man/as_spacetime.Rd | 2 - tests/testthat/test-spacetime-constructor_cli_update_patch.R |only 8 files changed, 20 insertions(+), 16 deletions(-)
Title: 'La Societe Nouvelle' API Access
Description: Tools facilitating access to the 'macro_data' service of the
'La Societe Nouvelle' API. It ensures an easy and fully-disclosed
access to all macro-level data used in the 'La Societe Nouvelle'
systems and the related metadata. Related API can be accessed from
<https://api.lasocietenouvelle.org/>.
Author: Joris Blain [aut, cre]
Maintainer: Joris Blain <joris.blain@lasocietenouvelle.org>
Diff between lsnstat versions 1.0.0 dated 2023-04-22 and 1.0.1 dated 2024-09-13
DESCRIPTION | 13 +++--- MD5 | 21 ++++++--- NAMESPACE | 6 ++ NEWS.md |only R/lsnstat-package.R | 18 ++++---- R/lsnstat_macrodata.R | 70 ++++++++++++++++++-------------- R/lsnstat_metadata.R | 46 +++++++++++---------- R/utils.R |only README.md | 4 - man/from_filter_list_to_sql.Rd |only man/get_endpoint.Rd |only man/get_lsn_dataset_list.Rd |only man/lsnstat_macrodata.Rd | 87 ++++++++++++++++++++++------------------- man/lsnstat_metadata.Rd | 70 +++++++++++++++----------------- 14 files changed, 181 insertions(+), 154 deletions(-)
Title: Equating of Multiple Forms
Description: Equating of multiple forms using Item Response Theory (IRT) methods (Battauz M. (2017) <doi:10.1007/s11336-016-9517-x>, Battauz and 'Leoncio' (2023) <doi:10.1177/01466216231151702>, Haberman S. J. (2009) <doi:10.1002/j.2333-8504.2009.tb02197.x>).
Author: Michela Battauz [aut, cre],
Waldir Leoncio [ctb]
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateMultiple versions 0.1.2 dated 2024-02-13 and 1.0.0 dated 2024-09-13
DESCRIPTION | 23 MD5 | 32 - NAMESPACE | 8 R/EqMult.r | 911 ++++++++++++++++++---------------- R/RcppExports.R | 8 build/vignette.rds |binary data |only inst/doc/equateMultiple_tutorial.R | 53 - inst/doc/equateMultiple_tutorial.Rmd | 74 +- inst/doc/equateMultiple_tutorial.html | 356 ++++++------- man/equateMultiple-package.Rd | 18 man/itm.Rd | 2 man/mathTest.Rd |only man/multiec.Rd | 41 + src/EqMult.cpp | 164 ++++++ src/Makevars |only src/Makevars.win |only src/RcppExports.cpp | 40 + vignettes/equateMultiple_tutorial.Rmd | 74 +- 19 files changed, 1078 insertions(+), 726 deletions(-)
More information about equateMultiple at CRAN
Permanent link
Title: Symbolic Differentiation
Description: R-based solution for symbolic differentiation. It admits
user-defined function as well as function substitution
in arguments of functions to be differentiated. Some symbolic
simplification is part of the work.
Author: Andrew Clausen [aut],
Serguei Sokol [aut, cre] ,
Andreas Rappold [ctb]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between Deriv versions 4.1.3 dated 2021-02-24 and 4.1.6 dated 2024-09-13
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NEWS | 21 ++++++++++++++++++++- R/Deriv.R | 20 +++++++++++++------- R/Simplify.R | 32 +++++++++++++++++++++++++++----- inst/CITATION | 2 +- man/Deriv-package.Rd | 4 ++-- man/Deriv.Rd | 17 +++++++++++++---- tests/testthat/test_Deriv.R | 7 +++++-- 9 files changed, 95 insertions(+), 36 deletions(-)
Title: R Interface to SDMX Web Services
Description: Provides functions to retrieve data and metadata from providers
that disseminate data by means of SDMX web services.
SDMX (Statistical Data and Metadata eXchange) is a standard that
has been developed with the aim of simplifying the exchange of
statistical information.
More about the SDMX standard and the SDMX Web Services
can be found at: <https://sdmx.org>.
Author: Attilio Mattiocco [aut, cre]
Maintainer: Attilio Mattiocco <attilio.mattiocco@bancaditalia.it>
Diff between RJSDMX versions 3.3-0 dated 2024-06-04 and 3.4-0 dated 2024-09-13
DESCRIPTION | 10 ++++++---- MD5 | 6 +++--- inst/java/SDMX.jar |binary man/RJSDMX-package.Rd | 2 +- 4 files changed, 10 insertions(+), 8 deletions(-)
Title: Quality Control for Label-Free Proteomics Expression Data
Description: Label-free bottom-up proteomics expression data is often affected by data heterogeneity and missing values. Normalization and missing value imputation are commonly used techniques to address these issues and make the dataset suitable for further downstream analysis. This package provides an optimal combination of normalization and imputation methods for the dataset. The package utilizes three normalization methods and three imputation methods.The statistical evaluation measures named pooled co-efficient of variance, pooled estimate of variance and pooled median absolute deviation are used for selecting the best combination of normalization and imputation method for the given dataset. The user can also visualize the results by using various plots available in this package. The user can also perform the differential expression analysis between two sample groups with the function included in this package. The chosen three normalization methods, three imputation methods and three evaluati [...truncated...]
Author: Kabilan S [aut, cre],
Dr Shashi Bhushan Lal [aut, ths],
Dr Sudhir Srivastava [aut, ths],
Dr Krishna Kumar Chaturvedi [ths],
Dr Yasin Jeshima K [ths],
Dr Ramasubramanian V [ths],
Dr Girish Kumar Jha [ctb]
Maintainer: Kabilan S <kabilan151414@gmail.com>
Diff between lfproQC versions 0.2.0 dated 2024-09-06 and 0.3.0 dated 2024-09-13
lfproQC-0.2.0/lfproQC/R/knn_rlr_yeast_data.R |only lfproQC-0.2.0/lfproQC/data/knn_rlr_yeast_data.rda |only lfproQC-0.2.0/lfproQC/man/knn_rlr_yeast_data.Rd |only lfproQC-0.3.0/lfproQC/DESCRIPTION | 8 lfproQC-0.3.0/lfproQC/MD5 | 49 - lfproQC-0.3.0/lfproQC/NEWS | 7 lfproQC-0.3.0/lfproQC/R/Boxplot_data.R | 2 lfproQC-0.3.0/lfproQC/R/Corrplot_data.R | 2 lfproQC-0.3.0/lfproQC/R/Densityplot_data.R | 2 lfproQC-0.3.0/lfproQC/R/MDSplot_data.R | 2 lfproQC-0.3.0/lfproQC/R/QQplot_data.R | 2 lfproQC-0.3.0/lfproQC/R/best_combination.R | 747 ++++++++++------------ lfproQC-0.3.0/lfproQC/R/rlr_knn_yeast_data.R |only lfproQC-0.3.0/lfproQC/R/top_table_fn.R | 2 lfproQC-0.3.0/lfproQC/README.md |only lfproQC-0.3.0/lfproQC/data/rlr_knn_yeast_data.rda |only lfproQC-0.3.0/lfproQC/inst/doc/user_guide.R | 14 lfproQC-0.3.0/lfproQC/inst/doc/user_guide.Rmd | 14 lfproQC-0.3.0/lfproQC/inst/doc/user_guide.html | 170 ++--- lfproQC-0.3.0/lfproQC/man/Boxplot_data.Rd | 2 lfproQC-0.3.0/lfproQC/man/Corrplot_data.Rd | 2 lfproQC-0.3.0/lfproQC/man/Densityplot_data.Rd | 2 lfproQC-0.3.0/lfproQC/man/MDSplot_data.Rd | 2 lfproQC-0.3.0/lfproQC/man/QQplot_data.Rd | 2 lfproQC-0.3.0/lfproQC/man/best_combination.Rd | 36 - lfproQC-0.3.0/lfproQC/man/lfproQC-package.Rd | 8 lfproQC-0.3.0/lfproQC/man/rlr_knn_yeast_data.Rd |only lfproQC-0.3.0/lfproQC/man/top_table_fn.Rd | 2 lfproQC-0.3.0/lfproQC/vignettes/user_guide.Rmd | 14 29 files changed, 556 insertions(+), 535 deletions(-)
Title: Lightening One-Code Resolving Microbial Ecology Solution
Description: Provides a robust collection of functions tailored for microbial ecology analysis, encompassing both data analysis and visualization. It introduces an encapsulation feature that streamlines the process into a summary object. With the initial configuration of this summary object, users can execute a wide range of analyses with a single line of code, requiring only two essential parameters for setup. The package delivers comprehensive outputs including analysis objects, statistical outcomes, and visualization-ready data, enhancing the efficiency of research workflows. Designed with user-friendliness in mind, it caters to both novices and seasoned researchers, offering an intuitive interface coupled with adaptable customization options to meet diverse analytical needs.
Author: Ningqi Wang [aut, cre, cph],
Yaozhong Zhang [aut],
Gaofei Jiang [aut]
Maintainer: Ningqi Wang <2434066068@qq.com>
Diff between LorMe versions 1.0.0 dated 2024-08-29 and 1.1.0 dated 2024-09-13
LorMe-1.0.0/LorMe/README.md |only LorMe-1.1.0/LorMe/DESCRIPTION | 10 +-- LorMe-1.1.0/LorMe/MD5 | 53 +++++++++----------- LorMe-1.1.0/LorMe/R/Alpha_diversity_calculator.R | 6 +- LorMe-1.1.0/LorMe/R/Deseq_analysis.R | 4 - LorMe-1.1.0/LorMe/R/Filter_function.R | 15 +---- LorMe-1.1.0/LorMe/R/Module_abundance.R | 7 ++ LorMe-1.1.0/LorMe/R/Module_composition.R | 4 - LorMe-1.1.0/LorMe/R/Pre_assumption.R | 4 - LorMe-1.1.0/LorMe/R/community_plot.R | 4 - LorMe-1.1.0/LorMe/R/differential_bar.R | 8 +-- LorMe-1.1.0/LorMe/R/indicator_analysis.R | 4 - LorMe-1.1.0/LorMe/R/network_analysis.R | 46 ++++++++++------- LorMe-1.1.0/LorMe/R/object_config.R | 11 ++++ LorMe-1.1.0/LorMe/R/structure_plot.R | 6 +- LorMe-1.1.0/LorMe/R/tax_summary.R | 3 + LorMe-1.1.0/LorMe/R/tbRDA_analysis.R | 2 LorMe-1.1.0/LorMe/man/Alpha_diversity_calculator.Rd | 4 - LorMe-1.1.0/LorMe/man/Deseq_analysis.Rd | 4 - LorMe-1.1.0/LorMe/man/Filter_function.Rd | 15 +---- LorMe-1.1.0/LorMe/man/Module_composition.Rd | 4 - LorMe-1.1.0/LorMe/man/auto_signif_test.Rd | 4 - LorMe-1.1.0/LorMe/man/community_plot.Rd | 2 LorMe-1.1.0/LorMe/man/differential_bar.Rd | 6 +- LorMe-1.1.0/LorMe/man/indicator_analysis.Rd | 4 - LorMe-1.1.0/LorMe/man/network_analysis.Rd | 3 + LorMe-1.1.0/LorMe/man/structure_plot.Rd | 2 LorMe-1.1.0/LorMe/man/tbRDA_analysis.Rd | 2 28 files changed, 128 insertions(+), 109 deletions(-)
Title: Handle Strings as Vectors of Characters
Description: Creates a new chars class which looks like a string but is actually
a vector of individual characters, making 'strings' iterable. This class
enables vector operations on 'strings' such as reverse, sort, head, and set
operations.
Author: Jonathan Carroll [aut, cre]
Maintainer: Jonathan Carroll <rpkg@jcarroll.com.au>
Diff between charcuterie versions 0.0.3 dated 2024-09-10 and 0.0.4 dated 2024-09-13
DESCRIPTION | 6 +++--- MD5 | 21 ++++++++++++++------- NAMESPACE | 4 ++++ NEWS.md | 5 +++++ R/classes.R |only README.md | 13 ++++++++++++- inst/doc/use_cases.R | 2 +- inst/doc/use_cases.Rmd | 2 +- man/is_alnum.Rd |only man/is_letter.Rd |only man/is_number.Rd |only man/is_punct.Rd |only tests/testthat/test-classes.R |only vignettes/spongebob.jpg |only vignettes/use_cases.Rmd | 2 +- 15 files changed, 41 insertions(+), 14 deletions(-)
Title: Individual Dose Optimization using Population Pharmacokinetics
Description: Optimize drug regimens through model-informed precision dosing,
using individual pharmacokinetic (PK) and pharmacokinetic-pharmacodynamic
(PK-PD) profiles. By integrating therapeutic drug monitoring (TDM) data with
population models, 'posologyr' provides accurate posterior estimates and
enables the calculation of personalized dosing regimens. The empirical Bayes
estimates are computed following the method described by Kang et al. (2012)
<doi:10.4196/kjpp.2012.16.2.97>.
Author: Cyril Leven [aut, cre, cph] ,
Matthew Fidler [ctb] ,
Emmanuelle Comets [ctb],
Audrey Lavenu [ctb],
Marc Lavielle [ctb]
Maintainer: Cyril Leven <cyril.leven@chu-brest.fr>
Diff between posologyr versions 1.2.6 dated 2024-08-27 and 1.2.7 dated 2024-09-13
posologyr-1.2.6/posologyr/build |only posologyr-1.2.6/posologyr/inst/doc |only posologyr-1.2.6/posologyr/tests/testthat/test_issue_53.R |only posologyr-1.2.6/posologyr/vignettes |only posologyr-1.2.7/posologyr/DESCRIPTION | 24 +++---- posologyr-1.2.7/posologyr/MD5 | 48 ++------------- posologyr-1.2.7/posologyr/NAMESPACE | 1 posologyr-1.2.7/posologyr/NEWS.md | 6 + posologyr-1.2.7/posologyr/R/et.R |only posologyr-1.2.7/posologyr/R/param_estim.R | 35 +++------- posologyr-1.2.7/posologyr/R/utils.R | 12 +-- posologyr-1.2.7/posologyr/man/poso_replace_et.Rd |only posologyr-1.2.7/posologyr/man/poso_simu_pop.Rd | 3 13 files changed, 46 insertions(+), 83 deletions(-)
Title: Compute Scagnostics on Pairs of Numeric Variables in a Data Set
Description: Computes a range of scatterplot diagnostics (scagnostics) on pairs
of numerical variables in a data set. A range of scagnostics, including graph
and association-based scagnostics described by Leland Wilkinson and Graham
Wills (2008) <doi:10.1198/106186008X320465> and association-based
scagnostics described by Katrin Grimm (2016,ISBN:978-3-8439-3092-5) can be
computed. Summary and plotting functions are provided.
Author: Harriet Mason [aut, cre] ,
Stuart Lee [aut] ,
Ursula Laa [aut] ,
Dianne Cook [aut]
Maintainer: Harriet Mason <harriet.m.mason@gmail.com>
Diff between cassowaryr versions 2.0.0 dated 2022-08-09 and 2.0.2 dated 2024-09-13
DESCRIPTION | 22 ++-- MD5 | 15 +-- NEWS.md | 10 +- R/scree.R | 5 - build/vignette.rds |binary inst/CITATION | 24 +++- inst/doc/cassowaryr.R | 4 inst/doc/cassowaryr.html | 232 ++++++++++++++++++++++++----------------------- man/figures |only 9 files changed, 172 insertions(+), 140 deletions(-)
Title: Fitting and Forecasting Gegenbauer ARMA Time Series Models
Description: Methods for estimating univariate long memory-seasonal/cyclical
Gegenbauer time series processes. See for example (2022) <doi:10.1007/s00362-022-01290-3>.
Refer to the vignette for details of fitting these processes.
Author: Richard Hunt [aut, cre]
Maintainer: Richard Hunt <maint@huntemail.id.au>
Diff between garma versions 0.9.22 dated 2024-09-05 and 0.9.23 dated 2024-09-12
DESCRIPTION | 8 MD5 | 13 - R/garma_main.R | 3 inst/doc/introduction.html | 4 tests/testthat/_snaps |only tests/testthat/test-garma.R |only tests/testthat/test-garma2.R |only tests/testthat/test-predict.R |only tests/testthat/test_garma.R | 492 +++++++++++++++++++++--------------------- 9 files changed, 263 insertions(+), 257 deletions(-)
Title: Visualization of Viral Protein Sequence Diversity Dynamics
Description: To ease the visualization of outputs from Diversity Motif Analyser ('DiMA';
<https://github.com/BVU-BILSAB/DiMA>). 'vDiveR' allows visualization of the diversity
motifs (index and its variants – major, minor and unique) for elucidation of
the underlying inherent dynamics. Please refer <https://vdiver-manual.readthedocs.io/en/latest/>
for more information.
Author: Pendy Tok [aut, cre],
Li Chuin Chong [aut],
Evgenia Chikina [aut],
Yin Cheng Chen [aut],
Mohammad Asif Khan [aut]
Maintainer: Pendy Tok <pendytok0518@gmail.com>
Diff between vDiveR versions 1.2.1 dated 2024-01-09 and 2.0.0 dated 2024-09-12
DESCRIPTION | 12 +- MD5 | 35 ++++---- NAMESPACE | 3 NEWS.md | 4 R/json2csv.R | 2 R/metadata_extraction.R | 182 ++++++++++++++++++++++++++++--------------- R/plot_time.R | 36 ++++---- R/plot_worldmap.R | 63 +++++++++----- R/sample_data.R | 8 - data/metadata.rda |binary inst/extdata/city_mapper.csv |only man/JSON_sample.Rd | 2 man/json2csv.Rd | 2 man/metadata.Rd | 2 man/metadata_extraction.Rd | 9 +- man/plot_time.Rd | 11 -- man/plot_worldmap.Rd | 4 man/protein_2hosts.Rd | 2 man/proteins_1host.Rd | 2 19 files changed, 226 insertions(+), 153 deletions(-)
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees [aut, cre],
Jake Anderson [ctb],
Leonard Lisapaly [ctb],
Dave Harris [aut, cph]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RSEIS versions 4.2-0 dated 2024-02-25 and 4.2-4 dated 2024-09-12
DESCRIPTION | 12 +- MD5 | 194 ++++++++++++++++++------------------ NAMESPACE | 2 R/ASCII.SEISN.R | 5 R/DECIMATE.SEISN.R | 22 +++- R/FAKEDATA.R |only R/JSAC.seis.R | 222 ++++++++--------------------------------- R/ReadSet.Instr.R | 36 ++++-- R/X2RSEIS.R | 5 R/Zdate.R | 2 R/butfilt.R | 15 ++ R/dateStamp.R | 2 R/downsample.R |only R/filedatetime.R | 2 R/getANSS.R | 4 R/getIRIS.R | 2 R/getPDEcsv.R | 2 R/getPDEscreen.R | 2 R/getseis24.R | 269 +++++++++++++++++--------------------------------- R/infoDB.R | 30 ++--- R/markseis24.R | 8 + R/pickseis24.R | 38 ++----- R/plotseis24.R | 31 ++++- R/read1segy.R | 6 - R/rseis2sac.R | 36 +----- R/rseis2segy.R | 38 ++++--- R/saveWPX.R | 4 R/view.seis.R | 19 ++- R/winseis24.R | 10 + R/wlet.do.R | 2 R/write1segy.R | 17 ++- man/ASCII.SEISN.Rd | 9 + man/AUGMENTbutfilt.Rd | 6 - man/DECIMATE.SEISN.Rd | 50 ++++++++- man/DISPLACE.SEISN.Rd | 23 ---- man/DISTxsec.Rd | 7 - man/DO.PMOT.ARR.Rd | 20 +++ man/FAKEDATA.Rd |only man/GET.seis.Rd | 87 ++++++++-------- man/Get1Dvel.Rd | 4 man/JSAC.seis.Rd | 49 ++------- man/MTMgabor.Rd | 6 - man/Mine.seis.Rd | 44 +++++--- man/P2GH.Rd | 7 - man/PLOT.ALLPX.Rd | 15 ++ man/PMOT.drive.Rd | 2 man/ReadInstr.Rd | 30 ++--- man/ReadSet.Instr.Rd | 11 -- man/SEARCHPIX.Rd | 7 + man/SEIS2list.Rd | 10 - man/SELBUT.Rd | 2 man/SPECT.drive.Rd | 31 ----- man/VELOCITY.SEISN.Rd | 20 --- man/WINGH.Rd | 2 man/X2RSEIS.Rd | 3 man/X2SAC.Rd | 6 - man/XTR.Rd | 2 man/YPIX.Rd | 2 man/ZOOM.SEISN.Rd | 4 man/Zdate.Rd | 6 - man/butfilt.Rd | 5 man/combineSEIS.Rd | 16 +- man/convert2Rseis.Rd | 62 ++--------- man/downsample.Rd |only man/editDB.Rd | 61 +++++++---- man/filedatetime.Rd | 2 man/getIRIS.Rd | 19 ++- man/getPDEcsv.Rd | 40 +++---- man/getseis24.Rd | 46 +++++++- man/grotseis.Rd | 17 ++- man/infoDB.Rd | 40 +++++-- man/lagplot.Rd | 11 -- man/longfft.Rd | 64 ++++++----- man/makeDB.Rd | 78 +++++--------- man/markseis24.Rd | 62 ++++++++--- man/parse.pde.Rd | 13 ++ man/pickseis24.Rd | 73 ++++++++++--- man/plotDB.Rd | 37 +++++- man/plotGH.Rd | 22 ++-- man/plotJGET.Rd | 19 ++- man/plotseis24.Rd | 43 ++++++- man/prepSEIS.Rd | 67 ------------ man/rdistaz.Rd | 25 ++++ man/read1segy.Rd | 21 +-- man/rseis2segy.Rd | 19 ++- man/ruler.Rd | 4 man/saveWPX.Rd | 4 man/segy2rseis.Rd | 23 ++-- man/seisorder.Rd | 2 man/setstas.Rd | 12 +- man/setupDB.Rd | 44 +++++--- man/swig.ALLPX.Rd | 13 +- man/tung.pulse.Rd | 11 +- man/view.seis.Rd | 112 +++++++++----------- man/winseis24.Rd | 49 +++++++-- man/wlet.do.Rd | 21 --- man/write1segy.Rd | 23 +++- src/ARAIC.c | 4 src/GetCornerFreq.c | 2 src/TTray.c | 48 ++++---- 100 files changed, 1410 insertions(+), 1326 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for data analysis with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre] ,
Edward L. Ionides [aut] ,
Carles Breto [aut] ,
Stephen P. Ellner [ctb] ,
Matthew J. Ferrari [ctb] ,
Sebastian Funk [ctb] ,
Steven G. Johnson [ctb],
Bruce E. Kendall [ctb] ,
Michael Lavine [ctb],
Dao Nguyen [ctb] ,
Eamon B. [...truncated...]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 5.10 dated 2024-07-01 and 5.11 dated 2024-09-12
DESCRIPTION | 8 +- MD5 | 134 +++++++++++++++++++++++----------------------- R/abc.R | 4 - R/accumulators.R | 2 R/basic_components.R | 2 R/basic_probes.R | 36 ++++++------ R/betabinom.R | 2 R/bsflu.R | 6 +- R/bsmc2.R | 2 R/bsplines.R | 4 - R/childhood.R | 2 R/conc.R | 2 R/concat.R | 4 - R/covariate_table.R | 2 R/csnippet.R | 2 R/dacca.R | 22 +++---- R/design.R | 4 - R/ebola.R | 6 +- R/eff_sample_size.R | 6 +- R/elementary_algorithms.R | 4 - R/estimation_algorithms.R | 2 R/filter_traj.R | 2 R/flow.R | 2 R/kalman.R | 9 +-- R/kf.R | 2 R/logmeanexp.R | 2 R/mcap.R | 16 ++--- R/mif2.R | 8 +- R/nlf.R | 40 ++++++------- R/objfun.R | 2 R/package.R | 4 - R/parameter_trans.R | 2 R/parmat.R | 2 R/parus.R | 3 - R/pfilter.R | 6 +- R/pmcmc.R | 8 +- R/pomp_examp.R | 6 +- R/probe.R | 2 R/probe_match.R | 12 ++-- R/profile_design.R | 6 +- R/proposals.R | 6 +- R/saved_states.R | 4 - R/sir.R | 42 +++++++------- R/skeleton_spec.R | 8 +- R/slice_design.R | 2 R/sobol_design.R | 4 - R/spect.R | 28 ++++----- R/spect_match.R | 4 - R/spy.R | 1 R/templates.R | 2 R/traj_match.R | 4 - R/trajectory.R | 4 - R/window.R | 2 R/workhorses.R | 2 R/wpfilter.R | 8 +- README.md | 2 inst/NEWS | 6 ++ inst/NEWS.Rd | 5 + man/bsplines.Rd | 2 man/macros/citations.Rd | 74 ++++++++++++------------- man/mcap.Rd | 2 man/probe_match.Rd | 5 + man/spy.Rd | 7 ++ src/distributions.c | 6 +- src/logmeanexp.c | 2 src/probe_marginal.c | 30 +++++----- src/synth_lik.c | 6 +- src/trajectory.c | 34 +++++------ 68 files changed, 359 insertions(+), 333 deletions(-)
Title: Many Ways to Make, Modify, Map, Mark, and Measure Myriad
Networks
Description: Many tools for making, modifying, mapping, marking, measuring,
and motifs and memberships of many different types of networks.
All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
The package includes functions for importing and exporting, creating and generating networks,
modifying networks and node and tie attributes,
and describing and visualizing networks with sensible defaults.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Christian Steglich [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manynet versions 1.0.5 dated 2024-08-30 and 1.1.0 dated 2024-09-12
manynet-1.0.5/manynet/R/map_layout_configurations.R |only manynet-1.0.5/manynet/R/map_layout_partition.R |only manynet-1.0.5/manynet/R/mark_is.R |only manynet-1.0.5/manynet/R/print_classes.R |only manynet-1.0.5/manynet/data/ison_monastery_esteem.rda |only manynet-1.0.5/manynet/data/ison_monastery_influence.rda |only manynet-1.0.5/manynet/data/ison_monastery_like.rda |only manynet-1.0.5/manynet/data/ison_monastery_praise.rda |only manynet-1.0.5/manynet/man/add_nodes.Rd |only manynet-1.0.5/manynet/man/add_ties.Rd |only manynet-1.0.5/manynet/man/as.Rd |only manynet-1.0.5/manynet/man/between_centrality.Rd |only manynet-1.0.5/manynet/man/close_centrality.Rd |only manynet-1.0.5/manynet/man/cluster.Rd |only manynet-1.0.5/manynet/man/configuration_layouts.Rd |only manynet-1.0.5/manynet/man/degree_centrality.Rd |only manynet-1.0.5/manynet/man/eigenv_centrality.Rd |only manynet-1.0.5/manynet/man/features.Rd |only manynet-1.0.5/manynet/man/from.Rd |only manynet-1.0.5/manynet/man/graphr.Rd |only manynet-1.0.5/manynet/man/graphs.Rd |only manynet-1.0.5/manynet/man/grapht.Rd |only manynet-1.0.5/manynet/man/is.Rd |only manynet-1.0.5/manynet/man/is_format.Rd |only manynet-1.0.5/manynet/man/ison_monastery.Rd |only manynet-1.0.5/manynet/man/kselect.Rd |only manynet-1.0.5/manynet/man/learning.Rd |only manynet-1.0.5/manynet/man/make_generate.Rd |only manynet-1.0.5/manynet/man/many_palettes.Rd |only manynet-1.0.5/manynet/man/measure_infection.Rd |only manynet-1.0.5/manynet/man/measure_net_diffusion.Rd |only manynet-1.0.5/manynet/man/measure_node_diffusion.Rd |only manynet-1.0.5/manynet/man/miss.Rd |only manynet-1.0.5/manynet/man/over.Rd |only manynet-1.0.5/manynet/man/partition_layouts.Rd |only manynet-1.0.5/manynet/man/play.Rd |only manynet-1.0.5/manynet/man/read.Rd |only manynet-1.0.5/manynet/man/reformat.Rd |only manynet-1.0.5/manynet/man/scales.Rd |only manynet-1.0.5/manynet/man/themes.Rd |only manynet-1.0.5/manynet/man/to_levels.Rd |only manynet-1.0.5/manynet/man/to_paths.Rd |only manynet-1.0.5/manynet/man/to_project.Rd |only manynet-1.0.5/manynet/man/to_scope.Rd |only manynet-1.0.5/manynet/man/write.Rd |only manynet-1.1.0/manynet/DESCRIPTION | 30 manynet-1.1.0/manynet/MD5 | 318 +++++----- manynet-1.1.0/manynet/NAMESPACE | 24 manynet-1.1.0/manynet/NEWS.md | 68 ++ manynet-1.1.0/manynet/R/class_marks.R | 13 manynet-1.1.0/manynet/R/class_measures.R | 11 manynet-1.1.0/manynet/R/class_networks.R |only manynet-1.1.0/manynet/R/data_ison.R | 472 +++++++-------- manynet-1.1.0/manynet/R/make_create.R | 8 manynet-1.1.0/manynet/R/make_generate.R | 179 +++-- manynet-1.1.0/manynet/R/make_play.R | 18 manynet-1.1.0/manynet/R/make_read.R | 127 +++- manynet-1.1.0/manynet/R/manip_as.R | 71 +- manynet-1.1.0/manynet/R/manip_correlation.R | 6 manynet-1.1.0/manynet/R/manip_from.R | 20 manynet-1.1.0/manynet/R/manip_miss.R | 8 manynet-1.1.0/manynet/R/manip_nodes.R | 36 - manynet-1.1.0/manynet/R/manip_reformat.R | 49 - manynet-1.1.0/manynet/R/manip_reformed.R | 69 +- manynet-1.1.0/manynet/R/manip_split.R | 10 manynet-1.1.0/manynet/R/manip_ties.R | 43 - manynet-1.1.0/manynet/R/manynet-tutorials.R | 49 - manynet-1.1.0/manynet/R/manynet-utils.R | 5 manynet-1.1.0/manynet/R/map_autograph.R | 14 manynet-1.1.0/manynet/R/map_layouts.R |only manynet-1.1.0/manynet/R/map_palettes.R | 5 manynet-1.1.0/manynet/R/map_plot.R | 6 manynet-1.1.0/manynet/R/map_theme.R | 72 +- manynet-1.1.0/manynet/R/mark_net.R |only manynet-1.1.0/manynet/R/mark_nodes.R | 10 manynet-1.1.0/manynet/R/mark_ties.R | 86 ++ manynet-1.1.0/manynet/R/measure_attributes.R | 2 manynet-1.1.0/manynet/R/measure_centrality.R | 90 +- manynet-1.1.0/manynet/R/measure_closure.R | 10 manynet-1.1.0/manynet/R/measure_cohesion.R | 2 manynet-1.1.0/manynet/R/measure_diffusion.R | 42 - manynet-1.1.0/manynet/R/measure_features.R | 20 manynet-1.1.0/manynet/R/measure_heterogeneity.R | 4 manynet-1.1.0/manynet/R/measure_hierarchy.R | 2 manynet-1.1.0/manynet/R/measure_holes.R | 2 manynet-1.1.0/manynet/R/measure_over.R | 17 manynet-1.1.0/manynet/R/measure_properties.R | 2 manynet-1.1.0/manynet/R/member_cliques.R | 4 manynet-1.1.0/manynet/R/member_community.R | 2 manynet-1.1.0/manynet/R/member_components.R | 6 manynet-1.1.0/manynet/R/member_core.R | 4 manynet-1.1.0/manynet/R/member_equivalence.R | 2 manynet-1.1.0/manynet/R/model_cluster.R | 6 manynet-1.1.0/manynet/R/model_k.R | 10 manynet-1.1.0/manynet/R/motif_census.R | 30 manynet-1.1.0/manynet/R/reexports_classes.R | 24 manynet-1.1.0/manynet/R/zzz.R |only manynet-1.1.0/manynet/README.md | 59 - manynet-1.1.0/manynet/data/ison_adolescents.rda |binary manynet-1.1.0/manynet/data/ison_algebra.rda |binary manynet-1.1.0/manynet/data/ison_brandes.rda |binary manynet-1.1.0/manynet/data/ison_friends.rda |binary manynet-1.1.0/manynet/data/ison_greys.rda |binary manynet-1.1.0/manynet/data/ison_hightech.rda |binary manynet-1.1.0/manynet/data/ison_karateka.rda |binary manynet-1.1.0/manynet/data/ison_koenigsberg.rda |binary 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manynet-1.1.0/manynet/man/ison_friends.Rd | 2 manynet-1.1.0/manynet/man/ison_greys.Rd | 2 manynet-1.1.0/manynet/man/ison_hightech.Rd | 2 manynet-1.1.0/manynet/man/ison_karateka.Rd | 2 manynet-1.1.0/manynet/man/ison_koenigsberg.Rd | 2 manynet-1.1.0/manynet/man/ison_laterals.Rd | 8 manynet-1.1.0/manynet/man/ison_lawfirm.Rd | 2 manynet-1.1.0/manynet/man/ison_lotr.Rd | 2 manynet-1.1.0/manynet/man/ison_marvel.Rd | 4 manynet-1.1.0/manynet/man/ison_monks.Rd |only manynet-1.1.0/manynet/man/ison_networkers.Rd | 2 manynet-1.1.0/manynet/man/ison_physicians.Rd | 8 manynet-1.1.0/manynet/man/ison_potter.Rd | 12 manynet-1.1.0/manynet/man/ison_southern_women.Rd | 2 manynet-1.1.0/manynet/man/ison_starwars.Rd | 14 manynet-1.1.0/manynet/man/ison_thrones.Rd |only manynet-1.1.0/manynet/man/ison_usstates.Rd | 2 manynet-1.1.0/manynet/man/make_cran.Rd |only manynet-1.1.0/manynet/man/make_create.Rd | 12 manynet-1.1.0/manynet/man/make_explicit.Rd | 12 manynet-1.1.0/manynet/man/make_learning.Rd |only manynet-1.1.0/manynet/man/make_play.Rd |only manynet-1.1.0/manynet/man/make_random.Rd |only manynet-1.1.0/manynet/man/make_read.Rd |only manynet-1.1.0/manynet/man/make_stochastic.Rd |only manynet-1.1.0/manynet/man/make_write.Rd |only manynet-1.1.0/manynet/man/manip_as.Rd |only manynet-1.1.0/manynet/man/manip_correlation.Rd | 20 manynet-1.1.0/manynet/man/manip_from.Rd |only manynet-1.1.0/manynet/man/manip_levels.Rd |only manynet-1.1.0/manynet/man/manip_miss.Rd |only manynet-1.1.0/manynet/man/manip_nodes.Rd |only manynet-1.1.0/manynet/man/manip_paths.Rd |only manynet-1.1.0/manynet/man/manip_permutation.Rd | 20 manynet-1.1.0/manynet/man/manip_project.Rd |only manynet-1.1.0/manynet/man/manip_reformat.Rd |only manynet-1.1.0/manynet/man/manip_scope.Rd |only manynet-1.1.0/manynet/man/manip_split.Rd | 20 manynet-1.1.0/manynet/man/manip_ties.Rd |only manynet-1.1.0/manynet/man/map_graphr.Rd |only manynet-1.1.0/manynet/man/map_graphs.Rd |only manynet-1.1.0/manynet/man/map_grapht.Rd |only 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manynet-1.1.0/manynet/man/reexports.Rd | 4 manynet-1.1.0/manynet/tests/testthat/test-manip_grab.R | 2 206 files changed, 1563 insertions(+), 1088 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc]
,
Christoph Burow [aut, trl, dtc]
,
Michael Dietze [aut] ,
Margret C. Fuchs [aut] ,
Christoph Schmidt [aut] ,
Manfred Fischer [aut, trl],
Johannes Friedrich [aut] ,
Norbert Mercier [aut] ,
Rachel K. Smedley [ct [...truncated...]
Maintainer: Sebastian Kreutzer <maintainer_luminescence@r-luminescence.org>
Diff between Luminescence versions 0.9.24 dated 2024-06-07 and 0.9.25 dated 2024-09-12
Luminescence-0.9.24/Luminescence/tests/testthat/test_RLum.R |only Luminescence-0.9.24/Luminescence/tests/testthat/test_analyse_IRSARRF.R |only Luminescence-0.9.24/Luminescence/tests/testthat/test_analyse_SARCWOSL.R |only Luminescence-0.9.24/Luminescence/tests/testthat/test_analyse_SARTL.R |only Luminescence-0.9.24/Luminescence/tests/testthat/test_calc_CobbeDoseRate.R |only Luminescence-0.9.24/Luminescence/tests/testthat/test_convert_XYSG2CSV.R |only Luminescence-0.9.24/Luminescence/tests/testthat/test_merge_RLumDataCurve.R |only Luminescence-0.9.24/Luminescence/tests/testthat/test_merge_RLumResults.R |only Luminescence-0.9.24/Luminescence/tests/testthat/test_merge_RisoeBINfileData.R |only Luminescence-0.9.25/Luminescence/DESCRIPTION | 79 - Luminescence-0.9.25/Luminescence/MD5 | 716 +++++----- Luminescence-0.9.25/Luminescence/NAMESPACE | 6 Luminescence-0.9.25/Luminescence/NEWS.md | 312 ++-- Luminescence-0.9.25/Luminescence/R/Analyse_SAR.OSLdata.R | 2 Luminescence-0.9.25/Luminescence/R/CW2pHMi.R | 7 Luminescence-0.9.25/Luminescence/R/PSL2Risoe.BINfileData.R | 17 Luminescence-0.9.25/Luminescence/R/RLum.Analysis-class.R | 89 - Luminescence-0.9.25/Luminescence/R/RLum.Data.Curve-class.R | 6 Luminescence-0.9.25/Luminescence/R/RLum.Data.Image-class.R | 8 Luminescence-0.9.25/Luminescence/R/RLum.Results-class.R | 37 Luminescence-0.9.25/Luminescence/R/Risoe.BINfileData-class.R | 2 Luminescence-0.9.25/Luminescence/R/Risoe.BINfileData2RLum.Analysis.R | 128 - Luminescence-0.9.25/Luminescence/R/Risoe.BINfileData2RLum.Data.Curve.R | 8 Luminescence-0.9.25/Luminescence/R/Second2Gray.R | 2 Luminescence-0.9.25/Luminescence/R/addins_RLum.R | 17 Luminescence-0.9.25/Luminescence/R/analyse_Al2O3C_CrossTalk.R | 18 Luminescence-0.9.25/Luminescence/R/analyse_Al2O3C_ITC.R | 28 Luminescence-0.9.25/Luminescence/R/analyse_Al2O3C_Measurement.R | 90 - Luminescence-0.9.25/Luminescence/R/analyse_FadingMeasurement.R | 121 - Luminescence-0.9.25/Luminescence/R/analyse_IRSAR.RF.R | 217 +-- Luminescence-0.9.25/Luminescence/R/analyse_SAR.CWOSL.R | 173 -- Luminescence-0.9.25/Luminescence/R/analyse_SAR.TL.R | 63 Luminescence-0.9.25/Luminescence/R/analyse_baSAR.R | 423 ++--- Luminescence-0.9.25/Luminescence/R/analyse_pIRIRSequence.R | 38 Luminescence-0.9.25/Luminescence/R/analyse_portableOSL.R | 52 Luminescence-0.9.25/Luminescence/R/apply_CosmicRayRemoval.R | 11 Luminescence-0.9.25/Luminescence/R/calc_AliquotSize.R | 26 Luminescence-0.9.25/Luminescence/R/calc_AverageDose.R | 28 Luminescence-0.9.25/Luminescence/R/calc_CommonDose.R | 38 Luminescence-0.9.25/Luminescence/R/calc_CosmicDoseRate.R | 13 Luminescence-0.9.25/Luminescence/R/calc_FadingCorr.R | 15 Luminescence-0.9.25/Luminescence/R/calc_FastRatio.R | 72 - Luminescence-0.9.25/Luminescence/R/calc_FiniteMixture.R | 62 Luminescence-0.9.25/Luminescence/R/calc_FuchsLang2001.R | 2 Luminescence-0.9.25/Luminescence/R/calc_Huntley2006.R | 67 Luminescence-0.9.25/Luminescence/R/calc_Lamothe2003.R | 13 Luminescence-0.9.25/Luminescence/R/calc_MinDose.R | 96 - Luminescence-0.9.25/Luminescence/R/calc_OSLLxTxDecomposed.R | 30 Luminescence-0.9.25/Luminescence/R/calc_Statistics.R | 5 Luminescence-0.9.25/Luminescence/R/calc_TLLxTxRatio.R | 1 Luminescence-0.9.25/Luminescence/R/calc_ThermalLifetime.R | 27 Luminescence-0.9.25/Luminescence/R/calc_WodaFuchs2008.R | 72 - Luminescence-0.9.25/Luminescence/R/calc_gSGC.R | 44 Luminescence-0.9.25/Luminescence/R/calc_gSGC_feldspar.R | 4 Luminescence-0.9.25/Luminescence/R/combine_De_Dr.R | 6 Luminescence-0.9.25/Luminescence/R/convert_Daybreak2CSV.R | 10 Luminescence-0.9.25/Luminescence/R/convert_Wavelength2Energy.R | 3 Luminescence-0.9.25/Luminescence/R/convert_XSYG2CSV.R | 2 Luminescence-0.9.25/Luminescence/R/extract_IrradiationTimes.R | 109 - Luminescence-0.9.25/Luminescence/R/fit_CWCurve.R | 53 Luminescence-0.9.25/Luminescence/R/fit_EmissionSpectra.R | 49 Luminescence-0.9.25/Luminescence/R/fit_LMCurve.R | 70 Luminescence-0.9.25/Luminescence/R/fit_OSLLifeTimes.R | 113 - Luminescence-0.9.25/Luminescence/R/fit_SurfaceExposure.R | 27 Luminescence-0.9.25/Luminescence/R/fit_ThermalQuenching.R | 8 Luminescence-0.9.25/Luminescence/R/get_Layout.R | 5 Luminescence-0.9.25/Luminescence/R/import_Data.R | 5 Luminescence-0.9.25/Luminescence/R/install_DevelopmentVersion.R | 7 Luminescence-0.9.25/Luminescence/R/internal_as.latex.table.R | 26 Luminescence-0.9.25/Luminescence/R/internals_RLum.R | 142 + Luminescence-0.9.25/Luminescence/R/internals_Thermochronometry.R | 149 ++ Luminescence-0.9.25/Luminescence/R/merge_RLum.Analysis.R | 21 Luminescence-0.9.25/Luminescence/R/merge_RLum.Data.Curve.R | 32 Luminescence-0.9.25/Luminescence/R/merge_RLum.R | 10 Luminescence-0.9.25/Luminescence/R/merge_RLum.Results.R | 15 Luminescence-0.9.25/Luminescence/R/merge_Risoe.BINfileData.R | 13 Luminescence-0.9.25/Luminescence/R/methods_RLum.R | 13 Luminescence-0.9.25/Luminescence/R/plot_AbanicoPlot.R | 131 - Luminescence-0.9.25/Luminescence/R/plot_DRCSummary.R | 25 Luminescence-0.9.25/Luminescence/R/plot_DRTResults.R | 23 Luminescence-0.9.25/Luminescence/R/plot_DetPlot.R | 59 Luminescence-0.9.25/Luminescence/R/plot_FilterCombinations.R | 50 Luminescence-0.9.25/Luminescence/R/plot_GrowthCurve.R | 152 -- Luminescence-0.9.25/Luminescence/R/plot_Histogram.R | 53 Luminescence-0.9.25/Luminescence/R/plot_KDE.R | 114 - Luminescence-0.9.25/Luminescence/R/plot_NRt.R | 25 Luminescence-0.9.25/Luminescence/R/plot_RLum.Analysis.R | 106 - Luminescence-0.9.25/Luminescence/R/plot_RLum.Data.Curve.R | 7 Luminescence-0.9.25/Luminescence/R/plot_RLum.Data.Spectrum.R | 89 - Luminescence-0.9.25/Luminescence/R/plot_RLum.R | 2 Luminescence-0.9.25/Luminescence/R/plot_RLum.Results.R | 23 Luminescence-0.9.25/Luminescence/R/plot_RadialPlot.R | 71 Luminescence-0.9.25/Luminescence/R/plot_Risoe.BINfileData.R | 13 Luminescence-0.9.25/Luminescence/R/plot_ViolinPlot.R | 37 Luminescence-0.9.25/Luminescence/R/read_BIN2R.R | 713 ++++----- Luminescence-0.9.25/Luminescence/R/read_Daybreak2R.R | 9 Luminescence-0.9.25/Luminescence/R/read_HeliosOSL2R.R |only Luminescence-0.9.25/Luminescence/R/read_PSL2R.R | 80 - Luminescence-0.9.25/Luminescence/R/read_RF2R.R | 7 Luminescence-0.9.25/Luminescence/R/read_SPE2R.R | 70 Luminescence-0.9.25/Luminescence/R/read_TIFF2R.R | 3 Luminescence-0.9.25/Luminescence/R/read_XSYG2R.R | 123 - Luminescence-0.9.25/Luminescence/R/report_RLum.R | 29 Luminescence-0.9.25/Luminescence/R/scale_GammaDose.R | 4 Luminescence-0.9.25/Luminescence/R/template_DRAC.R | 3 Luminescence-0.9.25/Luminescence/R/use_DRAC.R | 18 Luminescence-0.9.25/Luminescence/R/verify_SingleGrainData.R | 18 Luminescence-0.9.25/Luminescence/R/write_R2BIN.R | 38 Luminescence-0.9.25/Luminescence/R/write_R2TIFF.R | 3 Luminescence-0.9.25/Luminescence/R/write_RLum2CSV.R | 9 Luminescence-0.9.25/Luminescence/R/zzz.R | 2 Luminescence-0.9.25/Luminescence/README.md | 21 Luminescence-0.9.25/Luminescence/build/partial.rdb |binary Luminescence-0.9.25/Luminescence/build/vignette.rds |binary Luminescence-0.9.25/Luminescence/inst/CITATION | 2 Luminescence-0.9.25/Luminescence/inst/extdata/HeliosOSL_Example.osl |only Luminescence-0.9.25/Luminescence/man/Analyse_SAR.OSLdata.Rd | 4 Luminescence-0.9.25/Luminescence/man/CW2pHMi.Rd | 2 Luminescence-0.9.25/Luminescence/man/CW2pLM.Rd | 2 Luminescence-0.9.25/Luminescence/man/CW2pLMi.Rd | 2 Luminescence-0.9.25/Luminescence/man/CW2pPMi.Rd | 2 Luminescence-0.9.25/Luminescence/man/GitHub-API.Rd | 2 Luminescence-0.9.25/Luminescence/man/Luminescence-package.Rd | 5 Luminescence-0.9.25/Luminescence/man/PSL2Risoe.BINfileData.Rd | 8 Luminescence-0.9.25/Luminescence/man/RLum-class.Rd | 2 Luminescence-0.9.25/Luminescence/man/RLum.Analysis-class.Rd | 2 Luminescence-0.9.25/Luminescence/man/RLum.Data.Curve-class.Rd | 2 Luminescence-0.9.25/Luminescence/man/RLum.Data.Image-class.Rd | 2 Luminescence-0.9.25/Luminescence/man/RLum.Data.Spectrum-class.Rd | 2 Luminescence-0.9.25/Luminescence/man/RLum.Results-class.Rd | 2 Luminescence-0.9.25/Luminescence/man/Risoe.BINfileData-class.Rd | 2 Luminescence-0.9.25/Luminescence/man/Risoe.BINfileData2RLum.Analysis.Rd | 4 Luminescence-0.9.25/Luminescence/man/Second2Gray.Rd | 2 Luminescence-0.9.25/Luminescence/man/analyse_Al2O3C_CrossTalk.Rd | 2 Luminescence-0.9.25/Luminescence/man/analyse_Al2O3C_ITC.Rd | 2 Luminescence-0.9.25/Luminescence/man/analyse_Al2O3C_Measurement.Rd | 6 Luminescence-0.9.25/Luminescence/man/analyse_FadingMeasurement.Rd | 7 Luminescence-0.9.25/Luminescence/man/analyse_IRSAR.RF.Rd | 6 Luminescence-0.9.25/Luminescence/man/analyse_SAR.CWOSL.Rd | 2 Luminescence-0.9.25/Luminescence/man/analyse_SAR.TL.Rd | 2 Luminescence-0.9.25/Luminescence/man/analyse_baSAR.Rd | 6 Luminescence-0.9.25/Luminescence/man/analyse_pIRIRSequence.Rd | 2 Luminescence-0.9.25/Luminescence/man/analyse_portableOSL.Rd | 4 Luminescence-0.9.25/Luminescence/man/apply_CosmicRayRemoval.Rd | 4 Luminescence-0.9.25/Luminescence/man/apply_EfficiencyCorrection.Rd | 2 Luminescence-0.9.25/Luminescence/man/bin_RLum.Data.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_AliquotSize.Rd | 4 Luminescence-0.9.25/Luminescence/man/calc_AverageDose.Rd | 4 Luminescence-0.9.25/Luminescence/man/calc_CentralDose.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_CobbleDoseRate.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_CommonDose.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_CosmicDoseRate.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_FadingCorr.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_FastRatio.Rd | 10 Luminescence-0.9.25/Luminescence/man/calc_FiniteMixture.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_FuchsLang2001.Rd | 4 Luminescence-0.9.25/Luminescence/man/calc_HomogeneityTest.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_Huntley2006.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_IEU.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_Kars2008.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_Lamothe2003.Rd | 4 Luminescence-0.9.25/Luminescence/man/calc_MaxDose.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_MinDose.Rd | 13 Luminescence-0.9.25/Luminescence/man/calc_OSLLxTxDecomposed.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_OSLLxTxRatio.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_SourceDoseRate.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_Statistics.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_TLLxTxRatio.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_ThermalLifetime.Rd | 2 Luminescence-0.9.25/Luminescence/man/calc_WodaFuchs2008.Rd | 8 Luminescence-0.9.25/Luminescence/man/calc_gSGC.Rd | 4 Luminescence-0.9.25/Luminescence/man/calc_gSGC_feldspar.Rd | 2 Luminescence-0.9.25/Luminescence/man/combine_De_Dr.Rd | 4 Luminescence-0.9.25/Luminescence/man/convert_Activity2Concentration.Rd | 2 Luminescence-0.9.25/Luminescence/man/convert_BIN2CSV.Rd | 2 Luminescence-0.9.25/Luminescence/man/convert_Concentration2DoseRate.Rd | 2 Luminescence-0.9.25/Luminescence/man/convert_Daybreak2CSV.Rd | 4 Luminescence-0.9.25/Luminescence/man/convert_PSL2CSV.Rd | 2 Luminescence-0.9.25/Luminescence/man/convert_RLum2Risoe.BINfileData.Rd | 2 Luminescence-0.9.25/Luminescence/man/convert_SG2MG.Rd | 2 Luminescence-0.9.25/Luminescence/man/convert_Wavelength2Energy.Rd | 2 Luminescence-0.9.25/Luminescence/man/convert_XSYG2CSV.Rd | 2 Luminescence-0.9.25/Luminescence/man/extract_IrradiationTimes.Rd | 12 Luminescence-0.9.25/Luminescence/man/extract_ROI.Rd | 2 Luminescence-0.9.25/Luminescence/man/fit_CWCurve.Rd | 15 Luminescence-0.9.25/Luminescence/man/fit_EmissionSpectra.Rd | 2 Luminescence-0.9.25/Luminescence/man/fit_LMCurve.Rd | 2 Luminescence-0.9.25/Luminescence/man/fit_OSLLifeTimes.Rd | 5 Luminescence-0.9.25/Luminescence/man/fit_SurfaceExposure.Rd | 2 Luminescence-0.9.25/Luminescence/man/fit_ThermalQuenching.Rd | 2 Luminescence-0.9.25/Luminescence/man/get_Layout.Rd | 2 Luminescence-0.9.25/Luminescence/man/get_Quote.Rd | 2 Luminescence-0.9.25/Luminescence/man/get_RLum.Rd | 2 Luminescence-0.9.25/Luminescence/man/get_Risoe.BINfileData.Rd | 2 Luminescence-0.9.25/Luminescence/man/get_rightAnswer.Rd | 2 Luminescence-0.9.25/Luminescence/man/import_Data.Rd | 4 Luminescence-0.9.25/Luminescence/man/length_RLum.Rd | 2 Luminescence-0.9.25/Luminescence/man/merge_RLum.Analysis.Rd | 6 Luminescence-0.9.25/Luminescence/man/merge_RLum.Data.Curve.Rd | 2 Luminescence-0.9.25/Luminescence/man/merge_RLum.Rd | 6 Luminescence-0.9.25/Luminescence/man/merge_RLum.Results.Rd | 2 Luminescence-0.9.25/Luminescence/man/merge_Risoe.BINfileData.Rd | 2 Luminescence-0.9.25/Luminescence/man/methods_RLum.Rd | 7 Luminescence-0.9.25/Luminescence/man/names_RLum.Rd | 2 Luminescence-0.9.25/Luminescence/man/plot_AbanicoPlot.Rd | 13 Luminescence-0.9.25/Luminescence/man/plot_DRCSummary.Rd | 4 Luminescence-0.9.25/Luminescence/man/plot_DRTResults.Rd | 2 Luminescence-0.9.25/Luminescence/man/plot_DetPlot.Rd | 5 Luminescence-0.9.25/Luminescence/man/plot_FilterCombinations.Rd | 2 Luminescence-0.9.25/Luminescence/man/plot_GrowthCurve.Rd | 9 Luminescence-0.9.25/Luminescence/man/plot_Histogram.Rd | 2 Luminescence-0.9.25/Luminescence/man/plot_KDE.Rd | 9 Luminescence-0.9.25/Luminescence/man/plot_NRt.Rd | 6 Luminescence-0.9.25/Luminescence/man/plot_OSLAgeSummary.Rd | 2 Luminescence-0.9.25/Luminescence/man/plot_RLum.Analysis.Rd | 9 Luminescence-0.9.25/Luminescence/man/plot_RLum.Data.Curve.Rd | 8 Luminescence-0.9.25/Luminescence/man/plot_RLum.Data.Image.Rd | 2 Luminescence-0.9.25/Luminescence/man/plot_RLum.Data.Spectrum.Rd | 2 Luminescence-0.9.25/Luminescence/man/plot_RLum.Rd | 2 Luminescence-0.9.25/Luminescence/man/plot_RLum.Results.Rd | 2 Luminescence-0.9.25/Luminescence/man/plot_ROI.Rd | 2 Luminescence-0.9.25/Luminescence/man/plot_RadialPlot.Rd | 7 Luminescence-0.9.25/Luminescence/man/plot_Risoe.BINfileData.Rd | 2 Luminescence-0.9.25/Luminescence/man/plot_ViolinPlot.Rd | 9 Luminescence-0.9.25/Luminescence/man/read_BIN2R.Rd | 10 Luminescence-0.9.25/Luminescence/man/read_Daybreak2R.Rd | 2 Luminescence-0.9.25/Luminescence/man/read_HeliosOSL2R.Rd |only Luminescence-0.9.25/Luminescence/man/read_PSL2R.Rd | 15 Luminescence-0.9.25/Luminescence/man/read_RF2R.Rd | 2 Luminescence-0.9.25/Luminescence/man/read_SPE2R.Rd | 8 Luminescence-0.9.25/Luminescence/man/read_TIFF2R.Rd | 2 Luminescence-0.9.25/Luminescence/man/read_XSYG2R.Rd | 12 Luminescence-0.9.25/Luminescence/man/replicate_RLum.Rd | 2 Luminescence-0.9.25/Luminescence/man/report_RLum.Rd | 2 Luminescence-0.9.25/Luminescence/man/sTeve.Rd | 2 Luminescence-0.9.25/Luminescence/man/scale_GammaDose.Rd | 6 Luminescence-0.9.25/Luminescence/man/set_RLum.Rd | 2 Luminescence-0.9.25/Luminescence/man/set_Risoe.BINfileData.Rd | 2 Luminescence-0.9.25/Luminescence/man/smooth_RLum.Rd | 2 Luminescence-0.9.25/Luminescence/man/structure_RLum.Rd | 2 Luminescence-0.9.25/Luminescence/man/subset_SingleGrainData.Rd | 2 Luminescence-0.9.25/Luminescence/man/template_DRAC.Rd | 2 Luminescence-0.9.25/Luminescence/man/trim_RLum.Data.Rd | 2 Luminescence-0.9.25/Luminescence/man/tune_Data.Rd | 2 Luminescence-0.9.25/Luminescence/man/use_DRAC.Rd | 2 Luminescence-0.9.25/Luminescence/man/verify_SingleGrainData.Rd | 14 Luminescence-0.9.25/Luminescence/man/write_R2BIN.Rd | 12 Luminescence-0.9.25/Luminescence/man/write_R2TIFF.Rd | 2 Luminescence-0.9.25/Luminescence/man/write_RLum2CSV.Rd | 2 Luminescence-0.9.25/Luminescence/tests/testthat/_data |only Luminescence-0.9.25/Luminescence/tests/testthat/test_Analyse_SAROSLdata.R | 5 Luminescence-0.9.25/Luminescence/tests/testthat/test_CW2pX.R | 2 Luminescence-0.9.25/Luminescence/tests/testthat/test_PSL2RisoeBINfiledata.R | 17 Luminescence-0.9.25/Luminescence/tests/testthat/test_RLum.Analysis-class.R | 174 ++ Luminescence-0.9.25/Luminescence/tests/testthat/test_RLum.Data.Curve.R | 1 Luminescence-0.9.25/Luminescence/tests/testthat/test_RLum.Data.Image.R | 1 Luminescence-0.9.25/Luminescence/tests/testthat/test_RLum.Data.Spectrum.R | 1 Luminescence-0.9.25/Luminescence/tests/testthat/test_RLum.Results-class.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_Risoe.BINfileData2RLum.Analysis.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_Risoe.BINfileData2RLum.Data.Curve.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_RisoeBINfileData-class.R | 20 Luminescence-0.9.25/Luminescence/tests/testthat/test_Second2Gray.R | 24 Luminescence-0.9.25/Luminescence/tests/testthat/test_analyse_Al2O3C_CrossTalk.R | 40 Luminescence-0.9.25/Luminescence/tests/testthat/test_analyse_Al2O3C_ITC.R | 54 Luminescence-0.9.25/Luminescence/tests/testthat/test_analyse_Al2O3C_Measurement.R | 84 - Luminescence-0.9.25/Luminescence/tests/testthat/test_analyse_FadingMeasurement.R | 57 Luminescence-0.9.25/Luminescence/tests/testthat/test_analyse_IRSAR.RF.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_analyse_SAR.CWOSL.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_analyse_SAR.TL.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_analyse_baSAR.R | 220 ++- Luminescence-0.9.25/Luminescence/tests/testthat/test_analyse_pIRIRSequence.R | 59 Luminescence-0.9.25/Luminescence/tests/testthat/test_analyse_portableOSL.R | 72 - Luminescence-0.9.25/Luminescence/tests/testthat/test_apply_CosmicRayRemoval.R | 8 Luminescence-0.9.25/Luminescence/tests/testthat/test_apply_EfficiencyCorrection.R | 7 Luminescence-0.9.25/Luminescence/tests/testthat/test_as_latex_table.R | 37 Luminescence-0.9.25/Luminescence/tests/testthat/test_bin_RLumData.R | 2 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_AliquotSize.R | 34 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_AverageDose.R | 32 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_CentralDose.R | 14 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_CobbleDoseRate.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_CommonDose.R | 31 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_CosmicDoseRate.R | 52 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_FadingCorr.R | 27 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_FastRatio.R | 67 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_FiniteMixture.R | 30 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_FuchsLang2001.R | 12 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_HomogeneityTest.R | 14 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_Huntley2006.R | 78 - Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_IEU.R | 12 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_Lamothe2003.R | 59 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_MaxDose.R | 4 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_MinDose.R | 55 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_OSLLxTxDecomposed.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_OSLLxTxRatio.R | 8 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_SourceDoseRate.R | 3 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_Statistics.R | 19 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_TLLxTxRatio.R | 8 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_ThermalLifetime.R | 26 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_WodaFuchs2008.R | 50 Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_gSGC.R | 85 - Luminescence-0.9.25/Luminescence/tests/testthat/test_calc_gSGC_feldspar.R | 21 Luminescence-0.9.25/Luminescence/tests/testthat/test_combine_De_Dr.R | 34 Luminescence-0.9.25/Luminescence/tests/testthat/test_convert_Activity2Concentration.R | 15 Luminescence-0.9.25/Luminescence/tests/testthat/test_convert_Concentration2DoseRate.R | 3 Luminescence-0.9.25/Luminescence/tests/testthat/test_convert_Daybreak2CSV.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_convert_PSL2CSV.R | 3 Luminescence-0.9.25/Luminescence/tests/testthat/test_convert_RLum2Risoe.BINfileData.R | 14 Luminescence-0.9.25/Luminescence/tests/testthat/test_convert_SG2MG.R | 12 Luminescence-0.9.25/Luminescence/tests/testthat/test_convert_Wavelength2Energy.R | 8 Luminescence-0.9.25/Luminescence/tests/testthat/test_convert_XSYG2CSV.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_extract_IrradiationTimes.R | 50 Luminescence-0.9.25/Luminescence/tests/testthat/test_extract_ROI.R | 2 Luminescence-0.9.25/Luminescence/tests/testthat/test_fit_CWCurve.R | 67 Luminescence-0.9.25/Luminescence/tests/testthat/test_fit_EmissionSpectra.R | 42 Luminescence-0.9.25/Luminescence/tests/testthat/test_fit_LMCurve.R | 83 - Luminescence-0.9.25/Luminescence/tests/testthat/test_fit_OSLLifeTimes.R | 102 + Luminescence-0.9.25/Luminescence/tests/testthat/test_fit_SurfaceExposure.R | 74 - Luminescence-0.9.25/Luminescence/tests/testthat/test_fit_ThermalQuenching.R | 13 Luminescence-0.9.25/Luminescence/tests/testthat/test_get_Layout.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_get_RLum.R | 14 Luminescence-0.9.25/Luminescence/tests/testthat/test_github.R | 5 Luminescence-0.9.25/Luminescence/tests/testthat/test_import_Data.R | 8 Luminescence-0.9.25/Luminescence/tests/testthat/test_internals.R | 121 + Luminescence-0.9.25/Luminescence/tests/testthat/test_merge_RLum.Analysis.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_merge_RLum.Data.Curve.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_merge_RLum.R | 18 Luminescence-0.9.25/Luminescence/tests/testthat/test_merge_RLum.Results.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_merge_Risoe.BINfileData.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_methods_DRAC.R | 13 Luminescence-0.9.25/Luminescence/tests/testthat/test_methods_S3.R | 158 +- Luminescence-0.9.25/Luminescence/tests/testthat/test_names_RLum.R | 1 Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_AbanicoPlot.R | 89 + Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_DRCSummary.R | 57 Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_DRTResults.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_DetPlot.R | 89 + Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_FilterCombinations.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_Functions.R | 45 Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_GrowthCurve.R | 147 +- Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_Histogram.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_KDE.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_NRt.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_OSLAgeSummary.R | 5 Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_RLum.Analysis.R | 95 - Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_RLum.Data.Curve.R | 11 Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_RLum.Data.Image.R | 7 Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_RLum.Data.Spectrum.R | 52 Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_RLum.R | 1 Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_RLum.Results.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_ROI.R | 1 Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_RadialPlot.R | 95 + Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_Risoe.BINfileData.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_plot_ViolinPlot.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_read_BIN2R.R | 211 +- Luminescence-0.9.25/Luminescence/tests/testthat/test_read_Daybreak2R.R | 75 - Luminescence-0.9.25/Luminescence/tests/testthat/test_read_HeliosOSL2R.R |only Luminescence-0.9.25/Luminescence/tests/testthat/test_read_PSL2R.R | 31 Luminescence-0.9.25/Luminescence/tests/testthat/test_read_RF2R.R | 20 Luminescence-0.9.25/Luminescence/tests/testthat/test_read_SPE2R.R | 69 Luminescence-0.9.25/Luminescence/tests/testthat/test_read_TIFF2R.R | 1 Luminescence-0.9.25/Luminescence/tests/testthat/test_read_XSYG2R.R | 76 - Luminescence-0.9.25/Luminescence/tests/testthat/test_replicate_RLum.R | 1 Luminescence-0.9.25/Luminescence/tests/testthat/test_report_RLum.R | 17 Luminescence-0.9.25/Luminescence/tests/testthat/test_scale_GammaDose.R | 12 Luminescence-0.9.25/Luminescence/tests/testthat/test_smooth_RLum.R | 2 Luminescence-0.9.25/Luminescence/tests/testthat/test_structure_RLum.R | 1 Luminescence-0.9.25/Luminescence/tests/testthat/test_subset_RLum.R | 12 Luminescence-0.9.25/Luminescence/tests/testthat/test_subset_SingleGrainData.R | 1 Luminescence-0.9.25/Luminescence/tests/testthat/test_template_DRAC.R | 20 Luminescence-0.9.25/Luminescence/tests/testthat/test_trim_RLum.Data.R | 10 Luminescence-0.9.25/Luminescence/tests/testthat/test_use_DRAC.R | 31 Luminescence-0.9.25/Luminescence/tests/testthat/test_verify_SingleGrainData.R | 49 Luminescence-0.9.25/Luminescence/tests/testthat/test_write_R2BIN.R | 72 - Luminescence-0.9.25/Luminescence/tests/testthat/test_write_R2TIFF.R | 1 Luminescence-0.9.25/Luminescence/tests/testthat/test_write_RLum2CSV.R | 27 Luminescence-0.9.25/Luminescence/tests/testthat/test_zzz.R | 7 375 files changed, 6085 insertions(+), 4646 deletions(-)
Title: Analytics & Machine Learning Sidekick
Description: Auxiliary package for better/faster analytics, visualization, data mining, and machine
learning tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling,
MMM, Exploratory, API, and Scrapper, it helps the analyst or data scientist to get quick and
robust results, without the need of repetitive coding or advanced R programming skills.
Author: Bernardo Lares [aut, cre]
Maintainer: Bernardo Lares <laresbernardo@gmail.com>
Diff between lares versions 5.2.8 dated 2024-06-11 and 5.2.9 dated 2024-09-12
DESCRIPTION | 16 MD5 | 514 +++---- NAMESPACE | 1077 ++++++++-------- R/apis.R | 68 - R/audio.R | 359 ++--- R/cache.R | 326 ++-- R/chatgpt.R | 938 ++++++------- R/checks.R | 304 ++-- R/clusters.R | 694 +++++----- R/colour_palettes.R | 394 ++--- R/confidence.R | 172 +- R/correlations.R | 1116 ++++++++-------- R/cran.R | 176 +- R/credentials.R | 196 +- R/crosstab.R | 202 +-- R/currency.R | 146 +- R/dalex_explainers.R | 441 +++--- R/dataframe_str.R | 462 +++--- R/datasets.R | 160 +- R/dim_reduction.R | 336 ++--- R/distribution.R | 950 +++++++------- R/dropbox.R | 246 +-- R/encoding.R | 44 R/facebook.R | 1528 +++++++++++----------- R/forecasting.R | 710 +++++----- R/frequencies.R | 1724 ++++++++++++------------- R/gemini.R | 166 +- R/geodata.R | 524 +++---- R/google_analytics.R | 130 - R/google_sheets.R | 258 +-- R/google_trends.R | 380 ++--- R/hubspot.R | 398 ++--- R/hubspot_f1.R | 502 +++---- R/lares.R | 300 ++-- R/lasso.R | 262 +-- R/linkedin.R | 114 - R/logo.R | 98 - R/mails.R | 190 +- R/maze.R | 669 ++++----- R/missings.R | 260 +-- R/model_functions.R | 1954 ++++++++++++++--------------- R/model_metrics.R | 1232 +++++++++--------- R/model_plots.R | 2928 +++++++++++++++++++++---------------------- R/model_predict.R | 326 ++-- R/model_preprocessing.R | 490 +++---- R/numble.R | 54 R/object_detection.R | 120 - R/onehotencoding.R | 1050 +++++++-------- R/other_functions.R | 2264 ++++++++++++++++----------------- R/other_plots.R | 548 ++++---- R/outliers.R | 358 ++--- R/plot_scales.R | 224 +-- R/querieSQL.R | 64 R/robyn.R | 1169 +++++++++-------- R/rtistry.R | 96 - R/scrabble.R | 959 +++++++------- R/shapley.R | 538 ++++---- R/shiny.R | 2 R/slack.R | 92 - R/statusbar.R | 158 +- R/stocks.R | 3016 ++++++++++++++++++++++----------------------- R/sudoku.R | 178 +- R/surveys.R | 84 - R/text_mining.R | 1124 ++++++++-------- R/theme_lares.R | 818 ++++++------ R/tictoc.R | 188 +- R/trees.R | 297 ++-- R/twitter.R | 56 R/typeform.R | 98 - R/update.R | 74 - R/wordle.R | 596 ++++---- R/wrangling.R | 1722 ++++++++++++------------- R/x2y.R | 736 +++++----- R/zzz.R | 198 +- README.md | 146 +- inst/_pkgdown.yml | 20 inst/docs/config.yml | 28 inst/docs/stocksReport.Rmd | 160 +- man/ROC.Rd | 132 - man/autoline.Rd | 154 +- man/balance_data.Rd | 126 - man/bind_files.Rd | 114 - man/bring_api.Rd | 154 +- man/cache_write.Rd | 160 +- man/categ_reducer.Rd | 172 +- man/checks.Rd | 144 +- man/chr2num.Rd | 142 +- man/ci_lower.Rd | 74 - man/ci_var.Rd | 72 - man/clean_text.Rd | 214 +-- man/clusterKmeans.Rd | 236 +-- man/clusterOptimalK.Rd | 116 - man/clusterVisualK.Rd | 86 - man/conf_mat.Rd | 144 +- man/corr.Rd | 208 +-- man/corr_cross.Rd | 218 +-- man/corr_var.Rd | 230 +-- man/cran_logs.Rd | 74 - man/crosstab.Rd | 146 +- man/dalex_local.Rd | 64 man/dalex_residuals.Rd | 48 man/dalex_variable.Rd | 88 - man/date_cuts.Rd | 102 - man/date_feats.Rd | 206 +-- man/db_download.Rd | 212 +-- man/db_upload.Rd | 174 +- man/df_str.Rd | 122 - man/dfr.Rd | 70 - man/dft.Rd | 98 - man/dist2d.Rd | 70 - man/distr.Rd | 268 +-- man/errors.Rd | 132 - man/etf_sector.Rd | 68 - man/export_plot.Rd | 180 +- man/export_results.Rd | 196 +- man/fb_accounts.Rd | 144 +- man/fb_ads.Rd | 174 +- man/fb_creatives.Rd | 134 - man/fb_insights.Rd | 294 ++-- man/fb_process.Rd | 114 - man/fb_report_check.Rd | 150 +- man/fb_rf.Rd | 306 ++-- man/fb_token.Rd | 116 - man/file_name.Rd | 156 +- man/filesGD.Rd | 86 - man/files_functions.Rd | 148 +- man/filterdata.Rd | 246 +-- man/font_exists.Rd | 138 +- man/forecast_arima.Rd | 162 +- man/formatColoured.Rd | 144 +- man/format_string.Rd | 322 ++-- man/freqs.Rd | 272 ++-- man/freqs_df.Rd | 178 +- man/freqs_list.Rd | 258 +-- man/freqs_plot.Rd | 180 +- man/gain_lift.Rd | 142 +- man/gemini_ask.Rd | 200 +- man/get_credentials.Rd | 268 +-- man/get_currency.Rd | 88 - man/get_mp3.Rd | 174 +- man/get_tweets.Rd | 68 - man/gg_fill_customs.Rd | 162 +- man/glued.Rd | 192 +- man/google_sheets.Rd | 174 +- man/google_trends.Rd | 106 - man/gpt_ask.Rd | 354 ++--- man/gpt_prompter.Rd | 276 ++-- man/grepl_letters.Rd | 68 - man/grepm.Rd | 158 +- man/h2o_automl.Rd | 426 +++--- man/h2o_explainer.Rd | 140 +- man/h2o_results.Rd | 142 +- man/h2o_selectmodel.Rd | 154 +- man/h2o_shap.Rd | 154 +- man/haveInternet.Rd | 118 - man/holidays.Rd | 174 +- man/image_metadata.Rd | 112 - man/importxlsx.Rd | 114 - man/impute.Rd | 140 +- man/install_recommended.Rd | 38 man/ip_data.Rd | 156 +- man/is_url.Rd | 110 - man/iter_seeds.Rd | 84 - man/json2vector.Rd | 122 - man/lares-exports.Rd | 18 man/lares.Rd | 44 man/lares_logo.Rd | 36 man/lares_pal.Rd | 114 - man/lasso_vars.Rd | 188 +- man/left_right.Rd | 106 - man/li_auth.Rd | 88 - man/li_profile.Rd | 78 - man/list_cats.Rd | 134 - man/listfiles.Rd | 152 +- man/loglossBinary.Rd | 58 man/mail_send.Rd | 218 +-- man/markdown2df.Rd | 120 - man/maze_solve.Rd | 182 +- man/missingness.Rd | 140 +- man/model_metrics.Rd | 248 +-- man/model_preprocess.Rd | 230 +-- man/move_files.Rd | 120 - man/mplot_conf.Rd | 180 +- man/mplot_cuts.Rd | 134 - man/mplot_cuts_error.Rd | 128 - man/mplot_density.Rd | 138 +- man/mplot_full.Rd | 188 +- man/mplot_gain.Rd | 192 +- man/mplot_importance.Rd | 164 +- man/mplot_lineal.Rd | 118 - man/mplot_metrics.Rd | 104 - man/mplot_response.Rd | 186 +- man/mplot_roc.Rd | 174 +- man/mplot_splits.Rd | 158 +- man/mplot_topcats.Rd | 98 - man/msplit.Rd | 172 +- man/myip.Rd | 116 - man/ngrams.Rd | 98 - man/noPlot.Rd | 82 - man/normalize.Rd | 102 - man/num_abbr.Rd | 114 - man/ohe_commas.Rd | 140 +- man/ohse.Rd | 248 +-- man/outlier_turkey.Rd | 60 man/outlier_zscore.Rd | 68 - man/outlier_zscore_plot.Rd | 86 - man/plot_cats.Rd | 72 - man/plot_chord.Rd | 110 - man/plot_df.Rd | 72 - man/plot_nums.Rd | 80 - man/plot_palette.Rd | 82 - man/plot_survey.Rd | 74 - man/plot_timeline.Rd | 182 +- man/prophesize.Rd | 104 - man/quants.Rd | 132 - man/queryDB.Rd | 72 - man/queryGA.Rd | 160 +- man/quiet.Rd | 118 - man/read.file.Rd | 128 - man/reduce_pca.Rd | 128 - man/reduce_tsne.Rd | 102 - man/remove_stopwords.Rd | 82 - man/replaceall.Rd | 182 +- man/replacefactor.Rd | 114 - man/robyn_hypsbuilder.Rd | 124 - man/robyn_modelselector.Rd | 164 +- man/robyn_performance.Rd | 119 - man/rtistry_sphere.Rd | 36 man/scale_x_comma.Rd | 208 +-- man/scrabble.Rd | 310 ++-- man/sentimentBreakdown.Rd | 110 - man/shap_var.Rd | 118 - man/slackSend.Rd | 124 - man/spread_list.Rd | 82 - man/statusbar.Rd | 182 +- man/stocks_hist.Rd | 170 +- man/stocks_report.Rd | 334 ++-- man/sudoku_solver.Rd | 96 - man/target_set.Rd | 56 man/textCloud.Rd | 112 - man/textFeats.Rd | 134 - man/textTokenizer.Rd | 204 +-- man/theme_lares.Rd | 206 +-- man/tic.Rd | 200 +- man/topics_rake.Rd | 72 - man/tree_var.Rd | 270 +--- man/trim_mp3.Rd | 72 - man/try_require.Rd | 148 +- man/updateLares.Rd | 130 - man/vector2text.Rd | 132 - man/warnifnot.Rd | 118 - man/weighted_value.Rd | 102 - man/what_size.Rd | 146 +- man/winsorize.Rd | 64 man/wordle.Rd | 156 +- man/x2y.Rd | 256 +-- man/year_month.Rd | 110 - man/zerovar.Rd | 98 - 258 files changed, 33920 insertions(+), 33824 deletions(-)
Title: Generalized Additive Models
Description: Functions for fitting and working with generalized additive models, as described in chapter 7 of "Statistical Models in S" (Chambers and Hastie (eds), 1991), and "Generalized Additive Models" (Hastie and Tibshirani, 1990).
Author: Trevor Hastie [aut, cre],
Balasubramanian Narasimhan [ctb]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between gam versions 1.22-4 dated 2024-07-18 and 1.22-5 dated 2024-09-12
ChangeLog | 14 +++++++++++--- DESCRIPTION | 21 +++++++++++++-------- MD5 | 6 +++--- src/loessc.c | 12 ++++++------ 4 files changed, 33 insertions(+), 20 deletions(-)
Title: Dynamic Web-Based Analytics for the Energy Industry
Description: A 'Shiny' web application for energy industry analytics.
Take an overview of the industry, measure Key Performance Indicators,
identify changes in the industry over time, and discover new relationships in the data.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between eAnalytics versions 0.3 dated 2023-06-26 and 0.3.1 dated 2024-09-12
DESCRIPTION | 16 ++++++++-------- MD5 | 7 ++++--- NEWS.md | 2 -- README.md | 14 ++++++++++---- inst/CITATION |only 5 files changed, 22 insertions(+), 17 deletions(-)
Title: Analysis and Visualization of Macroevolutionary Dynamics on
Phylogenetic Trees
Description: Provides functions for analyzing and visualizing complex
macroevolutionary dynamics on phylogenetic trees. It is a companion
package to the command line program BAMM (Bayesian Analysis of
Macroevolutionary Mixtures) and is entirely oriented towards the analysis,
interpretation, and visualization of evolutionary rates. Functionality
includes visualization of rate shifts on phylogenies, estimating
evolutionary rates through time, comparing posterior distributions of
evolutionary rates across clades, comparing diversification models using
Bayes factors, and more.
Author: Dan Rabosky [aut],
Michael Grundler [aut],
Pascal Title [aut, cre] ,
Carlos Anderson [aut],
Jeff Shi [aut],
Joseph Brown [aut],
Huateng Huang [aut],
Jon Mitchell [aut]
Maintainer: Pascal Title <ptitle@umich.edu>
Diff between BAMMtools versions 2.1.11 dated 2023-12-19 and 2.1.12 dated 2024-09-12
DESCRIPTION | 29 ++++++++++++++++++++++------- MD5 | 14 +++++++------- R/BAMMtools-package.R | 3 +-- R/cohorts.R | 2 +- man/BAMMtools.Rd | 8 ++++++++ man/cohorts.Rd | 2 +- src/jenksBrks.c | 17 +++++++++-------- src/treetraverse.c | 40 ++++++++++++++++++++-------------------- 8 files changed, 69 insertions(+), 46 deletions(-)
Title: Conducts Analyses Informing Ecosystem Restoration Decisions
Description: Three sets of data and functions for informing ecosystem restoration
decisions, particularly in the context of the U.S. Army Corps of Engineers.
First, model parameters are compiled as a data set and associated metadata
for over 300 habitat suitability models developed by the U.S. Fish and
Wildlife Service (USFWS 1980, <https://www.fws.gov/policy-library/870fw1>).
Second, functions for conducting habitat suitability analyses both for the
models described above as well as generic user-specified model parameterizations.
Third, a suite of decision support tools for conducting cost-effectiveness and
incremental cost analyses (Robinson et al. 1995, IWR Report 95-R-1, U.S.
Army Corps of Engineers).
Author: S. Kyle McKay [aut, cre] ,
Darixa D. Hernandez-Abrams [aut],
Kiara C. Cushway [aut]
Maintainer: S. Kyle McKay <kyle.mckay@usace.army.mil>
Diff between ecorest versions 1.0.0 dated 2020-06-26 and 2.0.0 dated 2024-09-12
DESCRIPTION | 30 ++++---- MD5 | 24 +++--- NAMESPACE | 2 R/HSIeqtn.R | 135 +++++++++++++++++++++++++++--------- R/HSImetadata.R | 38 +++++++++- R/HSImodels.R | 11 +- R/SIcalc.R | 3 data/HSImetadata.RData |binary data/HSImodels.RData |binary man/HSIeqtn.Rd | 24 +++++- man/HSImetadata.Rd | 182 ++++++++++++++++++++++++++++--------------------- man/HSImodels.Rd | 65 +++++++++-------- man/SIcalc.Rd | 3 13 files changed, 341 insertions(+), 176 deletions(-)
Title: Statistical Tools for Ranks
Description: Account for uncertainty when working with ranks.
Estimate standard errors consistently in linear regression with ranked variables.
Construct confidence sets of various kinds for positions of populations in a ranking
based on values of a certain feature and their estimation errors.
Theory based on Mogstad, Romano, Shaikh, and Wilhelm (2023)<doi:10.1093/restud/rdad006> and
Chetverikov and Wilhelm (2023) <doi:10.48550/arXiv.2310.15512>.
Author: Daniel Wilhelm [aut, cre],
Pawel Morgen [aut]
Maintainer: Daniel Wilhelm <d.wilhelm@lmu.de>
Diff between csranks versions 1.2.2 dated 2024-01-24 and 1.2.3 dated 2024-09-12
csranks-1.2.2/csranks/tests/spelling.Rout.save |only csranks-1.2.3/csranks/DESCRIPTION | 10 csranks-1.2.3/csranks/MD5 | 57 +-- csranks-1.2.3/csranks/NAMESPACE | 3 csranks-1.2.3/csranks/NEWS.md | 12 csranks-1.2.3/csranks/R/data.R | 4 csranks-1.2.3/csranks/R/lmranks.R | 2 csranks-1.2.3/csranks/R/lmranks_model_selection.R | 15 csranks-1.2.3/csranks/R/lmranks_model_usage.R | 2 csranks-1.2.3/csranks/R/lmranks_summary.R | 21 - csranks-1.2.3/csranks/R/plotranking.R | 3 csranks-1.2.3/csranks/R/rank_utils.R | 40 +- csranks-1.2.3/csranks/R/ranks.R | 6 csranks-1.2.3/csranks/build/partial.rdb |binary csranks-1.2.3/csranks/build/vignette.rds |binary csranks-1.2.3/csranks/inst/doc/Inference-for-Ranks.html | 17 csranks-1.2.3/csranks/inst/doc/Inference-for-Ranks.rmd | 2 csranks-1.2.3/csranks/inst/doc/Rank-Rank-Reg.html | 188 ++++------ csranks-1.2.3/csranks/inst/doc/Rank-Rank-Reg.rmd | 2 csranks-1.2.3/csranks/man/csranks.Rd | 6 csranks-1.2.3/csranks/man/cstaubest.Rd | 2 csranks-1.2.3/csranks/man/irank.Rd | 15 csranks-1.2.3/csranks/man/irank_against.Rd | 36 + csranks-1.2.3/csranks/man/lmranks.Rd | 16 csranks-1.2.3/csranks/man/pisa.Rd | 2 csranks-1.2.3/csranks/man/pisa2018.Rd | 2 csranks-1.2.3/csranks/tests/testthat/test_grouped_lmranks_vcov.R | 8 csranks-1.2.3/csranks/tests/testthat/test_lmranks_vcov.R | 8 csranks-1.2.3/csranks/vignettes/Inference-for-Ranks.rmd | 2 csranks-1.2.3/csranks/vignettes/Rank-Rank-Reg.rmd | 2 30 files changed, 272 insertions(+), 211 deletions(-)
Title: "Risk Model Regression and Analysis with Complex Non-Linear
Models"
Description: Performs survival analysis using general non-linear models. Risk models can be the sum or product of terms. Each term is the product of exponential/linear functions of covariates. Additionally sub-terms can be defined as a sum of exponential, linear threshold, and step functions. Cox Proportional hazards <https://en.wikipedia.org/wiki/Proportional_hazards_model>, Poisson <https://en.wikipedia.org/wiki/Poisson_regression>, and Fine-Grey competing risks <https://www.publichealth.columbia.edu/research/population-health-methods/competing-risk-analysis> regression are supported. This work was sponsored by NASA Grant 80NSSC19M0161 through a subcontract from the National Council on Radiation Protection and Measurements (NCRP). The computing for this project was performed on the Beocat Research Cluster at Kansas State University, which is funded in part by NSF grants CNS-1006860, EPS-1006860, EPS-0919443, ACI-1440548, CHE-1726332, and NIH P20GM113109.
Author: Eric Giunta [aut, cre] ,
Amir Bahadori [ctb] ,
Dan Andresen [ctb],
Linda Walsh [ctb] ,
Benjamin French [ctb] ,
Lawrence Dauer [ctb],
John Boice Jr [ctb] ,
Kansas State University [cph],
NASA [fnd],
NCRP [fnd],
NRC [fnd]
Maintainer: Eric Giunta <egiunta@ksu.edu>
Diff between Colossus versions 1.1.3 dated 2024-09-06 and 1.1.3.1 dated 2024-09-12
DESCRIPTION | 6 - MD5 | 48 ++++---- NEWS.md | 4 README.md | 2 inst/doc/Alt_Distrib_Starts.Rmd | 8 - inst/doc/Alt_Distrib_Starts.html | 8 - inst/doc/Alt_Run_Opt.R | 12 ++ inst/doc/Alt_Run_Opt.Rmd | 28 +++- inst/doc/Alt_Run_Opt.html | 36 ++++-- inst/doc/Control_Options.Rmd | 7 + inst/doc/Control_Options.html | 214 ++++++++++++++++++++++++++++++------ inst/doc/Plotting_And_Analysis.Rmd | 2 inst/doc/Plotting_And_Analysis.html | 2 inst/doc/Starting-Description.R | 2 inst/doc/Starting-Description.Rmd | 20 +-- inst/doc/Starting-Description.html | 20 +-- src/R_Interface.cpp | 1 tests/testthat/test-multidose.R | 14 +- tests/testthat/test-omnibus.R | 8 + tools/config/configure.R | 4 vignettes/Alt_Distrib_Starts.Rmd | 8 - vignettes/Alt_Run_Opt.Rmd | 28 +++- vignettes/Control_Options.Rmd | 7 + vignettes/Plotting_And_Analysis.Rmd | 2 vignettes/Starting-Description.Rmd | 20 +-- 25 files changed, 376 insertions(+), 135 deletions(-)
Title: Ensembles of Caret Models
Description: Functions for creating ensembles of caret models: caretList()
and caretStack(). caretList() is a convenience function for fitting multiple
caret::train() models to the same dataset. caretStack() will make linear or
non-linear combinations of these models, using a caret::train() model as a
meta-model.
Author: Zachary A. Deane-Mayer [aut, cre, cph],
Jared E. Knowles [ctb],
Anton Lopez [ctb]
Maintainer: Zachary A. Deane-Mayer <zach.mayer@gmail.com>
Diff between caretEnsemble versions 4.0.0 dated 2024-08-17 and 4.0.1 dated 2024-09-12
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 3 +++ R/caretStack.R | 2 +- inst/doc/Version-4.0-New-Features.html | 18 +++++++++--------- inst/doc/caretEnsemble-intro.html | 32 ++++++++++++++++---------------- man/autoplot.caretStack.Rd | 2 +- 7 files changed, 42 insertions(+), 39 deletions(-)
Title: Dereplicate and Cherry-Pick Mass Spectrometry Spectra
Description: Convenient wrapper functions for the analysis of
matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF)
spectra data in order to select only representative spectra (also
called cherry-pick). The package covers the preprocessing and
dereplication steps (based on Strejcek, Smrhova, Junkova and Uhlik
(2018) <doi:10.3389/fmicb.2018.01294>) needed to cluster MALDI-TOF
spectra before the final cherry-picking step. It enables the easy
exclusion of spectra and/or clusters to accommodate complex
cherry-picking strategies. Alternatively, cherry-picking using
taxonomic identification MALDI-TOF data is made easy with functions to
import inconsistently formatted reports.
Author: Charlie Pauvert [aut, cre, cph]
,
David Wylensek [ctb] ,
Selina Nuechtern [ctb],
Thomas Clavel [ctb, fnd, cph]
Maintainer: Charlie Pauvert <cpauvert@ukaachen.de>
Diff between maldipickr versions 1.3.0 dated 2023-12-14 and 1.3.1 dated 2024-09-12
maldipickr-1.3.0/maldipickr/man/figures/logo.png |only maldipickr-1.3.1/maldipickr/DESCRIPTION | 13 maldipickr-1.3.1/maldipickr/MD5 | 44 +- maldipickr-1.3.1/maldipickr/NAMESPACE | 1 maldipickr-1.3.1/maldipickr/NEWS.md | 28 + maldipickr-1.3.1/maldipickr/R/gather_spectra_stats.R |only maldipickr-1.3.1/maldipickr/R/import_biotyper_spectra.R | 4 maldipickr-1.3.1/maldipickr/R/merge_processed_spectra.R | 21 + maldipickr-1.3.1/maldipickr/README.md | 163 +++------- maldipickr-1.3.1/maldipickr/build/vignette.rds |binary maldipickr-1.3.1/maldipickr/inst/WORDLIST | 17 - maldipickr-1.3.1/maldipickr/inst/doc/dereplicate-bruker-maldi-biotyper-spectra.R | 8 maldipickr-1.3.1/maldipickr/inst/doc/dereplicate-bruker-maldi-biotyper-spectra.Rmd | 8 maldipickr-1.3.1/maldipickr/inst/doc/dereplicate-bruker-maldi-biotyper-spectra.html | 12 maldipickr-1.3.1/maldipickr/inst/doc/import-data-from-bruker-maldi-biotyper.html | 14 maldipickr-1.3.1/maldipickr/inst/doc/maldipickr.R |only maldipickr-1.3.1/maldipickr/inst/doc/maldipickr.Rmd |only maldipickr-1.3.1/maldipickr/inst/doc/maldipickr.html |only maldipickr-1.3.1/maldipickr/man/figures/logo.svg |only maldipickr-1.3.1/maldipickr/man/figures/maldipickr-data-flow-portrait-thumb.png |only maldipickr-1.3.1/maldipickr/man/figures/maldipickr-data-flow-portrait.png |only maldipickr-1.3.1/maldipickr/man/figures/maldipickr-data-flow-portrait.svg |only maldipickr-1.3.1/maldipickr/man/gather_spectra_stats.Rd |only maldipickr-1.3.1/maldipickr/man/maldipickr-package.Rd | 3 maldipickr-1.3.1/maldipickr/man/merge_processed_spectra.Rd | 16 maldipickr-1.3.1/maldipickr/tests/testthat/test-gather_spectra_stats.R |only maldipickr-1.3.1/maldipickr/tests/testthat/test-merge_processed_spectra.R | 8 maldipickr-1.3.1/maldipickr/vignettes/dereplicate-bruker-maldi-biotyper-spectra.Rmd | 8 maldipickr-1.3.1/maldipickr/vignettes/maldipickr.Rmd |only 29 files changed, 218 insertions(+), 150 deletions(-)
Title: Variational Inference for Hierarchical Generalized Linear Models
Description: Estimates hierarchical models using mean-field variational Bayes.
At present, it can estimate logistic, linear, and negative binomial models.
It can accommodate models with an arbitrary number of random effects and
requires no integration to estimate. It also provides the ability to improve
the quality of the approximation using marginal augmentation.
Goplerud (2022) <doi:10.1214/21-BA1266> and Goplerud (2024) <doi:10.1017/S0003055423000035>
provide details on the variational algorithms.
Author: Max Goplerud [aut, cre]
Maintainer: Max Goplerud <mgoplerud@austin.utexas.edu>
Diff between vglmer versions 1.0.3 dated 2022-10-27 and 1.0.5 dated 2024-09-12
vglmer-1.0.3/vglmer/.Rinstignore |only vglmer-1.0.5/vglmer/DESCRIPTION | 18 vglmer-1.0.5/vglmer/MD5 | 37 vglmer-1.0.5/vglmer/NAMESPACE | 8 vglmer-1.0.5/vglmer/NEWS.md | 12 vglmer-1.0.5/vglmer/R/RcppExports.R | 4 vglmer-1.0.5/vglmer/R/mgcv_functions.R |only vglmer-1.0.5/vglmer/R/predict_functions.R | 105 ++ vglmer-1.0.5/vglmer/R/print_functions.R | 2 vglmer-1.0.5/vglmer/R/spline_functions.R | 385 +++++++--- vglmer-1.0.5/vglmer/R/vglmer_regression.R | 92 +- vglmer-1.0.5/vglmer/README.md | 8 vglmer-1.0.5/vglmer/man/LinRegChol.Rd | 4 vglmer-1.0.5/vglmer/man/Predict.matrix.randwalk.smooth.Rd |only vglmer-1.0.5/vglmer/man/fallback_subbars.Rd |only vglmer-1.0.5/vglmer/man/smooth.construct.randwalk.smooth.spec.Rd |only vglmer-1.0.5/vglmer/man/v_s.Rd | 23 vglmer-1.0.5/vglmer/man/vglmer_predict.Rd | 6 vglmer-1.0.5/vglmer/src/eigen_alpha.cpp | 4 vglmer-1.0.5/vglmer/tests/testthat/test-errors.R | 56 + vglmer-1.0.5/vglmer/tests/testthat/test-gKRLS.R |only vglmer-1.0.5/vglmer/tests/testthat/test-predict.R | 25 vglmer-1.0.5/vglmer/tests/testthat/test-splines.R | 85 +- 23 files changed, 654 insertions(+), 220 deletions(-)
Title: Star Trek Color Palettes
Description: Provides a dataset of predefined color palettes based on the Star Trek science fiction series, associated color palette functions,
and additional functions for generating customized palettes that are on theme. The package also offers functions for applying
the palettes to plots made using the 'ggplot2' package.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between trekcolors versions 0.1.3 dated 2021-06-01 and 0.2.0 dated 2024-09-12
DESCRIPTION | 16 ++-- MD5 | 51 ++++++------- NEWS.md | 4 + R/lcars.R | 59 ++++++++------- R/trekcolors.R | 30 +++++-- README.md | 97 +++++++++++++----------- inst/WORDLIST | 8 -- man/figures/README-ex2-1.png |binary man/figures/README-ex3-1.png |binary man/figures/README-ex3-2.png |binary man/figures/README-ex3-3.png |binary man/figures/README-ex3-4.png |binary man/figures/README-ex3-5.png |binary man/figures/README-ex3-6.png |binary man/figures/README-ex3-7.png |binary man/figures/README-ex3-8.png |binary man/figures/README-ex3-9.png |binary man/figures/README-ex5-1.png |binary man/figures/README-ex5-2.png |binary man/figures/README-ex5-3.png |binary man/figures/README-ex6-1.png |binary man/lcars_colors.Rd | 81 ++++++++++---------- man/lcars_pals.Rd | 112 +++++++++++++++------------- man/scale_lcars.Rd | 168 ++++++++++++++++++++++--------------------- man/scale_trek.Rd | 74 +++++++++--------- man/trek_pal.Rd | 81 ++++++++++---------- man/trekcolors.Rd |only 27 files changed, 413 insertions(+), 368 deletions(-)
Title: Read Cancer Records in the NAACCR Format
Description: Functions for reading cancer record files which follow a format
defined by the North American Association of Central Cancer Registries
(NAACCR).
Author: Nathan Werth [aut, cre],
Pennsylvania Department of Health [cph],
North American Association of Cancer Registries [cph],
World Health Organization [cph],
United States Centers for Disease Control and Prevention [cph],
United States Bureau of the Cens [...truncated...]
Maintainer: Nathan Werth <nwerth@pa.gov>
Diff between naaccr versions 2.0.2 dated 2022-11-23 and 3.0.1 dated 2024-09-12
DESCRIPTION | 52 ++++++-- MD5 | 43 +++--- NAMESPACE | 12 + NEWS | 21 +++ R/data-item-interpreting.R | 37 ++++- R/gis.R |only R/onLoad.R | 5 R/read_naaccr.R | 2 R/record_format.R | 8 + R/sysdata.rda |binary R/write_naaccr.R | 207 +++++++++++++++++++------------- README.md | 3 data/field_levels.RData |binary man/field_levels.Rd | 2 man/naaccr_datetime.Rd | 15 +- man/naaccr_formats.Rd | 12 + man/parse_geocoding_quality_codes.Rd |only man/read_naaccr.Rd | 2 man/write_naaccr_xml.Rd | 5 tests/testthat/test-gis.R |only tests/testthat/test-item-interpreting.R | 67 ++++++++-- tests/testthat/test-naaccr_record.R | 30 ++++ tests/testthat/test-utilities.R | 17 +- tests/testthat/test-write_naaccr.R | 2 24 files changed, 382 insertions(+), 160 deletions(-)
Title: Practical Functions for Biostatistics Beginners
Description: A set of user-friendly functions designed to fill gaps in existing introductory biostatistics R tools, making it easier for newcomers to perform basic biostatistical analyses without needing advanced programming skills.
The methods implemented in this package are based on the works:
Connor (1987) <doi:10.2307/2531961>
Fleiss, Levin, & Paik (2013, ISBN:978-1-118-62561-3)
Levin & Chen (1999) <doi:10.1080/00031305.1999.10474431>
McNemar (1947) <doi:10.1007/BF02295996>.
Author: Marina Mautner Wizentier [aut, cre]
,
Melody S. Goodman [aut] ,
Jemar R. Bather [aut]
Maintainer: Marina Mautner Wizentier <mm12025@nyu.edu>
Diff between biostats101 versions 0.1.0 dated 2024-09-04 and 0.1.1 dated 2024-09-12
DESCRIPTION | 6 - MD5 | 12 +-- R/power.2p.2n.R | 6 + R/power.paired.prop.R | 156 +++++++++++++++++++++++++++++++++-------------- README.md | 2 inst/CITATION | 2 man/power.paired.prop.Rd | 13 +-- 7 files changed, 135 insertions(+), 62 deletions(-)
Title: Stock Status Plots (SSPs)
Description: Pauly et al. (2008) <http://legacy.seaaroundus.s3.amazonaws.com/doc/Researcher+Publications/dpauly/PDF/2008/Books%26Chapters/FisheriesInLargeMarineEcosystems.pdf> created (and coined the name) 'Stock Status Plots' for a UNEP compendium on Large Marine Ecosystems(LMEs, Sherman and Hempel (2009)<https://marineinfo.org/imis?module=ref&refid=142061&printversion=1&dropIMIStitle=1>). Stock status plots are bivariate graphs summarizing the status (e.g., developing, fully exploited, overexploited, etc.), through time, of the multispecies fisheries of a fished area or ecosystem. This package contains three functions to generate stock status plots viz., SSplots_pauly() (as per the criteria proposed by Pauly et al.,2008), SSplots_kleisner() (as per the criteria proposed by Kleisner and Pauly (2011) <http://www.ecomarres.com/downloads/regional.pdf> and Kleisner et al. (2013) <doi:10.1111/j.1467-2979.2012.00469.x>)and SSplots_EPI() (as per the criteria proposed b [...truncated...]
Author: Eldho Varghese [aut, cre],
J Jayasankar [aut],
Sreepriya V [aut],
Reshma Gills [ctb],
Ashutosh Dalal [ctb]
Maintainer: Eldho Varghese <eldhoiasri@gmail.com>
Diff between SSplots versions 0.1.1 dated 2023-05-08 and 0.1.2 dated 2024-09-12
DESCRIPTION | 10 +++++----- MD5 | 12 +++++++----- NAMESPACE | 1 + R/SSplots_EPI.R |only R/SSplots_kleisner.R | 43 ++++++++++++++++++------------------------- R/SSplots_pauly.R | 41 ++++++++++++++++++----------------------- man/SSplots_EPI.Rd |only man/SSplots_pauly.Rd | 5 +++-- 8 files changed, 52 insertions(+), 60 deletions(-)
Title: List, Query, Manipulate System Processes
Description: List, query and manipulate all system processes, on
'Windows', 'Linux' and 'macOS'.
Author: Jay Loden [aut],
Dave Daeschler [aut],
Giampaolo Rodola' [aut],
Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between ps versions 1.7.7 dated 2024-07-02 and 1.8.0 dated 2024-09-12
DESCRIPTION | 10 MD5 | 112 +++--- NAMESPACE | 6 NEWS.md | 31 + R/cleancall.R |only R/disk.R | 302 ++++++++++++++++ R/iso-date.R |only R/kill-tree.R | 39 +- R/linux.R | 107 +++++ R/low-level.R | 260 ++++++++++++-- R/macos.R |only R/ps.R | 10 R/rematch2.R |only R/testthat-reporter.R | 59 ++- R/utils.R | 42 ++ README.md | 449 ++++++++---------------- configure | 9 man/CleanupReporter.Rd | 5 man/ps-package.Rd | 1 man/ps_apps.Rd |only man/ps_disk_io_counters.Rd |only man/ps_disk_partitions.Rd | 1 man/ps_disk_usage.Rd | 1 man/ps_environ.Rd | 25 + man/ps_fs_info.Rd |only man/ps_fs_mount_point.Rd |only man/ps_fs_stat.Rd |only man/ps_interrupt.Rd | 2 man/ps_kill.Rd | 26 + man/ps_kill_tree.Rd | 8 man/ps_memory_info.Rd | 2 man/ps_resume.Rd | 2 man/ps_send_signal.Rd | 2 man/ps_status.Rd | 28 + man/ps_suspend.Rd | 2 man/ps_terminate.Rd | 2 man/ps_wait.Rd |only src/api-linux.c | 582 +++++++++++++++++++++++++++++-- src/api-macos.c | 446 +++++++++++++++++++++--- src/api-posix.c | 301 ++++++++++++++++ src/api-windows.c | 603 +++++++++++++++++++++++++++++---- src/arch/macos/apps.m |only src/arch/macos/disk.c |only src/cleancall.c |only src/cleancall.h |only src/dummy.c | 16 src/extra.c | 24 - src/init.c | 17 src/ps-internal.h | 9 src/ps.h | 9 src/px.c | 57 +++ tests/testthat.R | 4 tests/testthat/_snaps |only tests/testthat/fixtures |only tests/testthat/helpers.R | 1 tests/testthat/test-cleanup-reporter.R | 14 tests/testthat/test-common.R | 83 ++++ tests/testthat/test-connections.R | 2 tests/testthat/test-disk.R |only tests/testthat/test-finished.R | 4 tests/testthat/test-kill-tree.R | 1 tests/testthat/test-macos.R | 8 tests/testthat/test-pid-reuse.R | 4 tests/testthat/test-posix.R | 49 ++ tests/testthat/test-wait-inotify.R |only tests/testthat/test-wait.R |only tools |only 67 files changed, 3168 insertions(+), 609 deletions(-)
Title: Package Dependency Resolution and Downloads
Description: Find recursive dependencies of 'R' packages from various
sources. Solve the dependencies to obtain a consistent set of packages
to install. Download packages, and install them. It supports packages
on 'CRAN', 'Bioconductor' and other 'CRAN-like' repositories,
'GitHub', package 'URLs', and local package trees and files. It caches
metadata and package files via the 'pkgcache' package, and performs
all 'HTTP' requests, downloads, builds and installations in parallel.
'pkgdepends' is the workhorse of the 'pak' package.
Author: Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pkgdepends versions 0.7.2 dated 2024-03-17 and 0.8.0 dated 2024-09-12
DESCRIPTION | 15 MD5 | 289 ++++++------ NAMESPACE | 4 R/builder.R |only R/gh-mirror.R |only R/gh-releases.R |only R/gh-repo.R |only R/ghcr.R |only R/git-app.R | 7 R/git-auth.R | 21 R/git-protocol.R | 79 ++- R/git-submodules.R |only R/install-plan.R | 58 +- R/iso-date.R |only R/parse-remotes.R | 13 R/repo.R |only R/resolution-df.R | 14 R/resolution.R | 2 R/solve.R | 34 + R/sysreqs2.R | 12 R/system-packages.R | 42 + R/time.R | 2 R/type-cran.R | 4 R/type-git.R | 43 - R/type-gitlab.R | 34 + R/utils.R | 14 R/zzz-pkgdepends-config.R | 12 inst/WORDLIST | 3 inst/docs/pak-config-docs.rds |binary inst/docs/pkg-refs.rds |binary inst/sysreqs/HEAD | 2 inst/sysreqs/rules/apparmor.json | 11 inst/sysreqs/rules/atk.json | 41 + inst/sysreqs/rules/automake.json | 9 inst/sysreqs/rules/berkeleydb.json | 9 inst/sysreqs/rules/blender.json | 10 inst/sysreqs/rules/boost.json |only inst/sysreqs/rules/cairo.json | 9 inst/sysreqs/rules/chrome.json | 38 + inst/sysreqs/rules/cmake.json | 9 inst/sysreqs/rules/eigen.json |only inst/sysreqs/rules/exiftool.json | 9 inst/sysreqs/rules/fftw3.json | 9 inst/sysreqs/rules/flint.json |only inst/sysreqs/rules/fluidsynth.json |only inst/sysreqs/rules/fontconfig.json | 9 inst/sysreqs/rules/freetype.json | 9 inst/sysreqs/rules/fribidi.json | 9 inst/sysreqs/rules/gdal.json | 14 inst/sysreqs/rules/geos.json | 9 inst/sysreqs/rules/git.json | 11 inst/sysreqs/rules/glib.json | 9 inst/sysreqs/rules/glpk.json | 14 inst/sysreqs/rules/glu.json | 9 inst/sysreqs/rules/gmp.json | 9 inst/sysreqs/rules/gnumake.json | 9 inst/sysreqs/rules/gpgme.json | 9 inst/sysreqs/rules/grpcpp.json |only inst/sysreqs/rules/gsl.json | 9 inst/sysreqs/rules/gtk.json | 9 inst/sysreqs/rules/harfbuzz.json | 9 inst/sysreqs/rules/haveged.json | 9 inst/sysreqs/rules/hdf5.json | 9 inst/sysreqs/rules/hiredis.json | 9 inst/sysreqs/rules/imagemagick.json | 9 inst/sysreqs/rules/java.json | 13 inst/sysreqs/rules/latex.json | 9 inst/sysreqs/rules/leptonica.json | 9 inst/sysreqs/rules/libarchive.json | 9 inst/sysreqs/rules/libavfilter.json | 11 inst/sysreqs/rules/libbsd.json | 9 inst/sysreqs/rules/libcurl.json | 10 inst/sysreqs/rules/libgit2.json | 15 inst/sysreqs/rules/libicu.json | 28 + inst/sysreqs/rules/libjpeg.json | 9 inst/sysreqs/rules/libjq.json | 9 inst/sysreqs/rules/libmagic.json | 9 inst/sysreqs/rules/libmysqlclient.json | 13 inst/sysreqs/rules/libpng.json | 9 inst/sysreqs/rules/libprotobuf.json | 9 inst/sysreqs/rules/librsvg2.json | 9 inst/sysreqs/rules/libsecret.json | 9 inst/sysreqs/rules/libsndfile.json | 9 inst/sysreqs/rules/libsodium.json | 9 inst/sysreqs/rules/libssh.json |only inst/sysreqs/rules/libssh2.json | 9 inst/sysreqs/rules/libtiff.json | 9 inst/sysreqs/rules/libtool.json |only inst/sysreqs/rules/libwebp.json | 9 inst/sysreqs/rules/libxml2.json | 9 inst/sysreqs/rules/libxslt.json | 9 inst/sysreqs/rules/libzstd.json |only inst/sysreqs/rules/mongodb.json | 9 inst/sysreqs/rules/mpfr.json | 9 inst/sysreqs/rules/mysql.json | 9 inst/sysreqs/rules/netcdf4.json | 9 inst/sysreqs/rules/odbc.json | 9 inst/sysreqs/rules/openbabel.json |only inst/sysreqs/rules/opencl.json | 10 inst/sysreqs/rules/opencv.json | 11 inst/sysreqs/rules/opengl.json | 9 inst/sysreqs/rules/openmpi.json | 9 inst/sysreqs/rules/openssl.json | 9 inst/sysreqs/rules/pandoc-citeproc.json | 3 inst/sysreqs/rules/pandoc.json | 20 inst/sysreqs/rules/pango.json | 9 inst/sysreqs/rules/perl.json | 9 inst/sysreqs/rules/pkg-config.json | 9 inst/sysreqs/rules/poppler.json | 11 inst/sysreqs/rules/postgresql.json | 35 - inst/sysreqs/rules/proj.json | 11 inst/sysreqs/rules/protobuf-compiler.json | 11 inst/sysreqs/rules/protobuf-grpc.json |only inst/sysreqs/rules/python.json | 9 inst/sysreqs/rules/python3.json | 9 inst/sysreqs/rules/redland.json | 9 inst/sysreqs/rules/rust.json | 9 inst/sysreqs/rules/sasl.json | 9 inst/sysreqs/rules/sdl2.json |only inst/sysreqs/rules/sqlite3.json | 9 inst/sysreqs/rules/suitesparse.json | 9 inst/sysreqs/rules/tcltk.json | 9 inst/sysreqs/rules/tesseract.json | 9 inst/sysreqs/rules/tk.json | 11 inst/sysreqs/rules/udunits2.json | 14 inst/sysreqs/rules/v8.json | 2 inst/sysreqs/rules/wget.json | 9 inst/sysreqs/rules/xft.json | 9 inst/sysreqs/rules/xz.json |only inst/sysreqs/rules/zeromq.json | 9 inst/sysreqs/rules/zlib.json | 9 man/ghr.Rd |only man/ghrepo.Rd |only man/pkg_build.Rd |only man/pkg_config.Rd | 5 man/pkg_refs.Rd | 22 man/repo.Rd |only tests/testthat/_snaps/assertions.md | 6 tests/testthat/_snaps/git-protocol.md | 49 +- tests/testthat/_snaps/git-submodules.md |only tests/testthat/_snaps/parse-remotes.md | 561 +++++++++++++++++++++--- tests/testthat/_snaps/pillar-1.9.0/type-bioc.md | 3 tests/testthat/_snaps/pillar-1.9.0/type-git.md | 5 tests/testthat/_snaps/pkg-dependencies.md | 22 tests/testthat/_snaps/pkg-downloads.md | 22 tests/testthat/_snaps/pkg-installation.md | 22 tests/testthat/_snaps/pkgdepends-config.md | 22 tests/testthat/_snaps/sysreqs.md | 22 tests/testthat/_snaps/type-cran.md | 84 +-- tests/testthat/_snaps/type-gitlab.md | 2 tests/testthat/fixtures/git-repo.tar.gz |binary tests/testthat/fixtures/submodules.ini |only tests/testthat/fixtures/submodules2.ini |only tests/testthat/fixtures/submodules3.ini |only tests/testthat/helper-install.R | 2 tests/testthat/test-git-submodules.R |only tests/testthat/test-parse-remotes.R | 27 - tests/testthat/test-sysreqs.R | 2 tests/testthat/test-type-git.R | 21 tests/testthat/test-type-gitlab.R | 4 160 files changed, 2054 insertions(+), 497 deletions(-)
Title: Cache 'CRAN'-Like Metadata and R Packages
Description: Metadata and package cache for CRAN-like repositories. This
is a utility package to be used by package management tools that want
to take advantage of caching.
Author: Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pkgcache versions 2.2.2 dated 2024-04-04 and 2.2.3 dated 2024-09-12
DESCRIPTION | 8 MD5 | 46 +-- NAMESPACE | 1 NEWS.md | 15 + R/aaa-async.R | 1 R/archive.R | 2 R/bioc.R | 1 R/installed.R | 2 R/metadata-cache.R | 3 R/onload.R | 438 ------------------------------------- R/packages-gz.R | 15 - R/ppm.R | 39 --- R/repo-set.R | 16 - man/pkgcache-package.Rd | 83 +++---- man/repo_get.Rd | 2 src/lib.c | 4 tests/async/test-call-function.R | 1 tests/testthat/_snaps/installed.md | 7 tests/testthat/_snaps/platform.md | 11 tests/testthat/_snaps/ppm.md | 39 +-- tests/testthat/test-installed.R | 9 tests/testthat/test-platform.R | 7 tests/testthat/test-ppm.R | 35 -- tests/testthat/test-repo-set.R | 25 -- 24 files changed, 169 insertions(+), 641 deletions(-)
Title: Methods for Graphical Models and Causal Inference
Description: Functions for causal structure
learning and causal inference using graphical models. The main algorithms
for causal structure learning are PC (for observational data without hidden
variables), FCI and RFCI (for observational data with hidden variables),
and GIES (for a mix of data from observational studies
(i.e. observational data) and data from experiments
involving interventions (i.e. interventional data) without hidden
variables). For causal inference the IDA algorithm, the Generalized
Backdoor Criterion (GBC), the Generalized Adjustment Criterion (GAC)
and some related functions are implemented. Functions for incorporating
background knowledge are provided.
Author: Markus Kalisch [aut, cre],
Alain Hauser [aut],
Martin Maechler [aut],
Diego Colombo [ctb],
Doris Entner [ctb],
Patrik Hoyer [ctb],
Antti Hyttinen [ctb],
Jonas Peters [ctb],
Nicoletta Andri [ctb],
Emilija Perkovic [ctb],
Preetam Nandy [ctb],
Philipp R [...truncated...]
Maintainer: Markus Kalisch <kalisch@stat.math.ethz.ch>
Diff between pcalg versions 2.7-11 dated 2024-02-12 and 2.7-12 dated 2024-09-12
pcalg-2.7-11/pcalg/tests/test_randDAG.Rout.save |only pcalg-2.7-12/pcalg/DESCRIPTION | 8 +-- pcalg-2.7-12/pcalg/MD5 | 56 ++++++++++++------------ pcalg-2.7-12/pcalg/build/partial.rdb |binary pcalg-2.7-12/pcalg/build/vignette.rds |binary pcalg-2.7-12/pcalg/inst/doc/vignette2018.pdf |binary pcalg-2.7-12/pcalg/man/LINGAM.Rd | 2 pcalg-2.7-12/pcalg/man/ages.Rd | 8 ++- pcalg-2.7-12/pcalg/man/amatType.Rd | 2 pcalg-2.7-12/pcalg/man/corGraph.Rd | 2 pcalg-2.7-12/pcalg/man/dag2essgraph.Rd | 4 - pcalg-2.7-12/pcalg/man/fciPlus.Rd | 5 +- pcalg-2.7-12/pcalg/man/ges.Rd | 4 + pcalg-2.7-12/pcalg/man/getGraph.Rd | 8 +-- pcalg-2.7-12/pcalg/man/gmG.Rd | 2 pcalg-2.7-12/pcalg/man/gmI.Rd | 2 pcalg-2.7-12/pcalg/man/opt.target.Rd | 2 pcalg-2.7-12/pcalg/man/optAdjSet.Rd | 2 pcalg-2.7-12/pcalg/man/pcAlgo-class.Rd | 2 pcalg-2.7-12/pcalg/man/pdag2allDags.Rd | 2 pcalg-2.7-12/pcalg/man/possAn.Rd | 2 pcalg-2.7-12/pcalg/man/possDe.Rd | 2 pcalg-2.7-12/pcalg/man/randDAG.Rd | 33 +++++++------- pcalg-2.7-12/pcalg/man/randomDAG.Rd | 3 - pcalg-2.7-12/pcalg/tests/Rplots.pdf |binary pcalg-2.7-12/pcalg/tests/filesToFix_Tests.txt |only pcalg-2.7-12/pcalg/tests/test_addBgKnowledge.R | 2 pcalg-2.7-12/pcalg/tests/test_possDeAn.R | 2 pcalg-2.7-12/pcalg/tests/test_randDAG.R | 18 ++++--- pcalg-2.7-12/pcalg/tests/test_rfci.R | 7 +-- 30 files changed, 97 insertions(+), 83 deletions(-)
Title: Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
Description: Lp_solve is freely available (under LGPL 2) software for
solving linear, integer and mixed integer programs. In this
implementation we supply a "wrapper" function in C and some R
functions that solve general linear/integer problems,
assignment problems, and transportation problems. This version
calls lp_solve version 5.5.
Author: Gabor Csardi [cre],
Michel Berkelaar [aut]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between lpSolve versions 5.6.20 dated 2023-12-10 and 5.6.21 dated 2024-09-12
DESCRIPTION | 15 ++++++++++----- MD5 | 7 ++++--- NEWS.md |only src/commonlib.c | 6 +----- src/lp_utils.c | 1 - 5 files changed, 15 insertions(+), 14 deletions(-)
Title: Local Likelihood Inference for Conditional Copula Models
Description: Implements a local likelihood estimator for the dependence parameter in bivariate conditional copula models. Copula family and local likelihood bandwidth parameters are selected by leave-one-out cross-validation. The models are implemented in 'TMB', meaning that the local score function is efficiently calculated via automated differentiation (AD), such that quasi-Newton algorithms may be used for parameter estimation.
Author: Elif Fidan Acar [aut],
Martin Lysy [aut, cre],
Alan Kuchinsky [ctb]
Maintainer: Martin Lysy <mlysy@uwaterloo.ca>
Diff between LocalCop versions 0.0.1 dated 2024-03-21 and 0.0.2 dated 2024-09-12
LocalCop-0.0.1/LocalCop/inst/doc/LocalCop-vignette.R |only LocalCop-0.0.1/LocalCop/inst/doc/LocalCop-vignette.Rmd |only LocalCop-0.0.1/LocalCop/inst/doc/LocalCop-vignette.html |only LocalCop-0.0.1/LocalCop/vignettes/LocalCop-vignette.Rmd |only LocalCop-0.0.2/LocalCop/DESCRIPTION | 17 ++-- LocalCop-0.0.2/LocalCop/MD5 | 58 ++++++++-------- LocalCop-0.0.2/LocalCop/NEWS.md | 14 +++ LocalCop-0.0.2/LocalCop/R/CondiCopLikCV.R | 4 - LocalCop-0.0.2/LocalCop/R/CondiCopLocFit.R | 4 - LocalCop-0.0.2/LocalCop/R/CondiCopLocFun.R | 7 - LocalCop-0.0.2/LocalCop/R/CondiCopSelect.R | 26 ++++--- LocalCop-0.0.2/LocalCop/R/ConvertPar.R | 16 +++- LocalCop-0.0.2/LocalCop/R/utils.R | 26 ++++++- LocalCop-0.0.2/LocalCop/build/vignette.rds |binary LocalCop-0.0.2/LocalCop/inst/doc/LocalCop.R |only LocalCop-0.0.2/LocalCop/inst/doc/LocalCop.Rmd |only LocalCop-0.0.2/LocalCop/inst/doc/LocalCop.html |only LocalCop-0.0.2/LocalCop/man/ConvertPar.Rd | 6 + LocalCop-0.0.2/LocalCop/src/TMB/LocalLikelihood.hpp | 40 ++++++++--- LocalCop-0.0.2/LocalCop/src/TMB/dclayton.hpp | 2 LocalCop-0.0.2/LocalCop/src/TMB/dfrank.hpp | 2 LocalCop-0.0.2/LocalCop/src/TMB/dgumbel.hpp | 2 LocalCop-0.0.2/LocalCop/src/TMB/hclayton.hpp | 22 +++--- LocalCop-0.0.2/LocalCop/src/TMB/hfrank.hpp | 2 LocalCop-0.0.2/LocalCop/src/TMB/hgaussian.hpp | 2 LocalCop-0.0.2/LocalCop/src/TMB/hgumbel.hpp | 2 LocalCop-0.0.2/LocalCop/src/TMB/pclayton.hpp | 22 +++--- LocalCop-0.0.2/LocalCop/src/TMB/pfrank.hpp | 2 LocalCop-0.0.2/LocalCop/src/TMB/pgumbel.hpp | 22 +++--- LocalCop-0.0.2/LocalCop/src/TMB/pt.hpp | 18 ++-- LocalCop-0.0.2/LocalCop/src/TMB/qt.hpp | 18 ++-- LocalCop-0.0.2/LocalCop/tests/testthat/helper.R | 16 +++- LocalCop-0.0.2/LocalCop/tests/testthat/test-LocLikFun.R | 29 +++++--- LocalCop-0.0.2/LocalCop/vignettes/LocalCop.Rmd |only 34 files changed, 236 insertions(+), 143 deletions(-)
Title: Likelihood-Based Intrinsic Dimension Estimators
Description: Provides functions to estimate the intrinsic dimension of a dataset
via likelihood-based approaches. Specifically, the package implements the
'TWO-NN' and 'Gride' estimators and the 'Hidalgo' Bayesian mixture model.
In addition, the first reference contains an extended vignette on the usage of
the 'TWO-NN' and 'Hidalgo' models. References:
Denti (2023, <doi:10.18637/jss.v106.i09>);
Allegra et al. (2020, <doi:10.1038/s41598-020-72222-0>);
Denti et al. (2022, <doi:10.1038/s41598-022-20991-1>);
Facco et al. (2017, <doi:10.1038/s41598-017-11873-y>);
Santos-Fernandez et al. (2021, <doi:10.1038/s41598-022-20991-1>).
Author: Francesco Denti [aut, cre, cph]
,
Andrea Gilardi [aut]
Maintainer: Francesco Denti <francescodenti.personal@gmail.com>
Diff between intRinsic versions 1.0.2 dated 2024-01-15 and 1.1.0 dated 2024-09-12
intRinsic-1.0.2/intRinsic/src/intR_source.cpp |only intRinsic-1.1.0/intRinsic/DESCRIPTION | 11 - intRinsic-1.1.0/intRinsic/MD5 | 27 ++- intRinsic-1.1.0/intRinsic/NEWS.md | 9 + intRinsic-1.1.0/intRinsic/R/RcppExports.R | 24 +- intRinsic-1.1.0/intRinsic/R/hidalgo.R | 67 ++------ intRinsic-1.1.0/intRinsic/R/rdir_exmcmcPack.R | 16 - intRinsic-1.1.0/intRinsic/README.md | 49 +++-- intRinsic-1.1.0/intRinsic/build/partial.rdb |binary intRinsic-1.1.0/intRinsic/man/figures/README-pressure-1.png |only intRinsic-1.1.0/intRinsic/src/A_AUX.cpp |only intRinsic-1.1.0/intRinsic/src/A_AUX.h |only intRinsic-1.1.0/intRinsic/src/B_FULLCOND.cpp |only intRinsic-1.1.0/intRinsic/src/B_FULLCOND.h |only intRinsic-1.1.0/intRinsic/src/C_GAMMA.cpp |only intRinsic-1.1.0/intRinsic/src/C_GAMMA.h |only intRinsic-1.1.0/intRinsic/src/G_GRIDE.cpp |only intRinsic-1.1.0/intRinsic/src/G_GRIDE.h |only intRinsic-1.1.0/intRinsic/src/RcppExports.cpp | 100 ++++++------ intRinsic-1.1.0/intRinsic/src/Z_unused.cpp |only 20 files changed, 154 insertions(+), 149 deletions(-)
Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as
'cloud charts'. Static and interactive visualizations with tools for
creating, backtesting and development of quantitative 'ichimoku' strategies.
As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement
on candlestick charting, originating from Japan and now in widespread use in
technical analysis worldwide. Translating as 'one-glance equilibrium chart',
it allows the price action and market structure of financial securities to
be determined 'at-a-glance'. Incorporates an interface with the OANDA
fxTrade API <https://developer.oanda.com/> for retrieving historical and
live streaming price data for major currencies, metals, commodities,
government bonds and stock indices.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between ichimoku versions 1.5.4 dated 2024-08-18 and 1.5.5 dated 2024-09-12
DESCRIPTION | 8 +-- MD5 | 108 ++++++++++++++++++++--------------------- NAMESPACE | 3 - NEWS.md | 10 +++ R/archive.R | 4 - R/data.R | 38 +++++++------- R/ichimoku-package.R | 9 ++- R/ichimoku.R | 14 +++-- R/iplot.R | 24 ++++----- R/methods.R | 67 +++++++++++++------------ R/mltools.R | 36 +++++++------ R/oanda.R | 47 +++++++++++------ R/plot.R | 50 ++++++++++-------- R/strat.R | 22 ++++---- R/switch.R | 5 + R/utils.R | 89 ++++++++++++++++++--------------- inst/doc/utilities.html | 94 +++++++++++++++++------------------ man/as.data.frame.ichimoku.Rd | 10 +-- man/autoplot.ichimoku.Rd | 27 +++++----- man/autostrat.Rd | 13 ++-- man/coredata.ichimoku.Rd | 15 +++-- man/df_append.Rd | 23 ++++---- man/df_merge.Rd | 10 +-- man/dot-ichimoku.Rd | 10 ++- man/grid_dup.Rd | 6 +- man/ichimoku.Rd | 8 +-- man/index.ichimoku.Rd | 15 +++-- man/iplot.Rd | 32 ++++++------ man/is.ichimoku.Rd | 3 - man/look.Rd | 8 +-- man/matrix_df.Rd | 2 man/mlgrid.Rd | 29 ++++++----- man/oanda.Rd | 27 +++++----- man/oanda_chart.Rd | 23 ++++---- man/oanda_instruments.Rd | 10 +-- man/oanda_orders.Rd | 10 +-- man/oanda_positions.Rd | 10 +-- man/oanda_quote.Rd | 14 ++--- man/oanda_stream.Rd | 10 +-- man/oanda_studio.Rd | 30 ++++++----- man/oanda_switch.Rd | 5 + man/oanda_view.Rd | 14 ++--- man/plot.ichimoku.Rd | 29 ++++++----- man/print.ichimoku.Rd | 6 +- man/str.ichimoku.Rd | 8 +-- man/strat.Rd | 15 +++-- man/stratcombine.Rd | 7 +- man/summary.ichimoku.Rd | 13 ++-- man/tradingDays.Rd | 10 +-- man/xts_df.Rd | 6 +- src/shikokuchuo.c | 78 +++++++++++++---------------- tests/testthat/test-ichimoku.R | 11 ++-- tests/testthat/test-mltools.R | 15 +++-- tests/testthat/test-strat.R | 14 +++-- tests/testthat/test-utils.R | 6 -- 55 files changed, 642 insertions(+), 568 deletions(-)
Title: ASCII Formatting for Values and Tables
Description: We provide a framework for rendering complex tables to ASCII,
and a set of formatters for transforming values or sets of values into
ASCII-ready display strings.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Davide Garolini [ctb],
Emily de la Rua [ctb],
Abinaya Yogasekaram [ctb],
Joe Zhu [ctb, cre],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between formatters versions 0.5.8 dated 2024-06-19 and 0.5.9 dated 2024-09-12
DESCRIPTION | 18 +++++------ MD5 | 36 +++++++++++----------- NAMESPACE | 4 ++ NEWS.md | 6 ++- R/format_value.R | 42 +++++++++++++++++-------- R/matrix_form.R | 1 R/package.R | 1 README.md | 62 +++++++++++--------------------------- inst/WORDLIST | 2 - inst/doc/formatters.html | 9 ++++- man/format_value.Rd | 9 +++-- man/test_matrix_form.Rd | 3 + tests/testthat/setup.R | 1 tests/testthat/test-exporters.R | 15 ++++----- tests/testthat/test-formatters.R | 40 ++++++++++++++++++++---- tests/testthat/test-listings.R | 8 +++- tests/testthat/test-matrix_form.R | 5 +++ tests/testthat/test-pagination.R | 16 ++++----- tests/testthat/test-print.R | 4 ++ 19 files changed, 162 insertions(+), 120 deletions(-)
Title: Generating Features for a Cohort
Description: An R interface for generating features for a cohort using data in the Common Data Model. Features can be constructed using default or custom made feature definitions. Furthermore it's possible to aggregate features and get the summary statistics.
Author: Martijn Schuemie [aut],
Marc Suchard [aut],
Patrick Ryan [aut],
Jenna Reps [aut],
Anthony Sena [aut],
Ger Inberg [aut, cre],
Observational Health Data Science and Informatics [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between FeatureExtraction versions 3.7.0 dated 2024-09-03 and 3.7.1 dated 2024-09-12
FeatureExtraction-3.7.0/FeatureExtraction/inst/java/featureExtraction-3.7.0-SNAPSHOT.jar |only FeatureExtraction-3.7.1/FeatureExtraction/DESCRIPTION | 8 +- FeatureExtraction-3.7.1/FeatureExtraction/MD5 | 38 +++++----- FeatureExtraction-3.7.1/FeatureExtraction/NEWS.md | 12 +++ FeatureExtraction-3.7.1/FeatureExtraction/inst/csv/jarChecksum.txt | 2 FeatureExtraction-3.7.1/FeatureExtraction/inst/doc/CreatingCovariatesBasedOnOtherCohorts.pdf |binary FeatureExtraction-3.7.1/FeatureExtraction/inst/doc/CreatingCovariatesUsingCohortAttributes.pdf |binary FeatureExtraction-3.7.1/FeatureExtraction/inst/doc/CreatingCustomCovariateBuilders.pdf |binary FeatureExtraction-3.7.1/FeatureExtraction/inst/doc/CreatingCustomCovariateBuildersKorean.pdf |binary FeatureExtraction-3.7.1/FeatureExtraction/inst/doc/UsingFeatureExtraction.pdf |binary FeatureExtraction-3.7.1/FeatureExtraction/inst/doc/UsingFeatureExtractionKorean.pdf |binary FeatureExtraction-3.7.1/FeatureExtraction/inst/java/featureExtraction-3.7.1-SNAPSHOT.jar |only FeatureExtraction-3.7.1/FeatureExtraction/java/org/ohdsi/featureExtraction/FeatureExtraction.java | 2 FeatureExtraction-3.7.1/FeatureExtraction/tests/testBigQuery.R | 2 FeatureExtraction-3.7.1/FeatureExtraction/tests/testOracle.R | 4 - FeatureExtraction-3.7.1/FeatureExtraction/tests/testPostgres.R | 4 - FeatureExtraction-3.7.1/FeatureExtraction/tests/testRedshift.R | 4 - FeatureExtraction-3.7.1/FeatureExtraction/tests/testSnowflake.R | 2 FeatureExtraction-3.7.1/FeatureExtraction/tests/testSpark.R | 2 FeatureExtraction-3.7.1/FeatureExtraction/tests/testSqlServer.R | 4 - FeatureExtraction-3.7.1/FeatureExtraction/tests/testthat/test-query-no-fail.R | 6 + 21 files changed, 52 insertions(+), 38 deletions(-)
More information about FeatureExtraction at CRAN
Permanent link
Title: Estimation Statistics with Confidence Intervals
Description: A collection of functions and 'jamovi' module for the estimation approach to inferential statistics, the approach which emphasizes effect sizes, interval estimates, and meta-analysis. Nearly all functions are based on 'statpsych' and 'metafor'. This package is still under active development, and breaking changes are likely, especially with the plot and hypothesis test functions. Data sets are included for all examples from Cumming & Calin-Jageman (2024) <ISBN:9780367531508>.
Author: Robert Calin-Jageman [aut, cre, cph]
Maintainer: Robert Calin-Jageman <rcalinjageman@dom.edu>
Diff between esci versions 1.0.3 dated 2024-07-08 and 1.0.4 dated 2024-09-12
DESCRIPTION | 10 - MD5 | 138 +++++++-------- NEWS.md | 15 + R/data.R | 68 ++++--- R/estimate_mdiff_ind_contrast.R | 15 + R/jamovidescribe.b.R | 2 R/jamovidescribe.h.R | 28 --- R/jamovimdifftwo.b.R | 4 R/jamovirdifftwo.b.R | 2 R/plot_mdiff.R | 13 - R/statpsych_wrapper.R | 18 +- R/tools_jamovi.R | 14 - README.md | 7 build/stage23.rdb |binary man/data_altruism_happiness.Rd | 76 ++++---- man/data_anchor_estimate_ma.Rd | 86 ++++----- man/data_basol_badnews.Rd | 96 +++++------ man/data_bem_psychic.Rd | 96 +++++------ man/data_bodywellf.Rd | 48 ++--- man/data_bodywellfm.Rd | 48 ++--- man/data_bodywellm.Rd | 48 ++--- man/data_campus_involvement.Rd | 66 +++---- man/data_chap_8_paired_ex_8.18.Rd | 54 +++--- man/data_clean_moral.Rd | 78 ++++----- man/data_college_survey_1.Rd | 90 +++++----- man/data_college_survey_2.Rd | 76 ++++---- man/data_damischrcj.Rd | 52 +++--- man/data_effronraj_fakenews.Rd | 90 +++++----- man/data_emotion_heartrate.Rd | 64 +++---- man/data_exam_scores.Rd | 58 +++--- man/data_flag_priming_ma.Rd | 76 ++++---- man/data_gender_math_iat.Rd | 78 ++++----- man/data_gender_math_iat_ma.Rd | 84 ++++----- man/data_halagappa.Rd | 82 ++++----- man/data_home_prices.Rd | 66 +++---- man/data_kardas_expt_3.Rd | 86 ++++----- man/data_kardas_expt_4.Rd | 94 +++++----- man/data_labels_flavor.Rd | 78 ++++----- man/data_latimier_3groups.Rd | 81 ++++----- man/data_latimier_prequiz.Rd | 56 +++--- man/data_latimier_quiz.Rd | 56 +++--- man/data_latimier_quiz_prequiz.Rd | 56 +++--- man/data_latimier_reread.Rd | 56 +++--- man/data_latimier_reread_prequiz.Rd | 56 +++--- man/data_latimier_reread_quiz.Rd | 56 +++--- man/data_macnamara_r_ma.Rd | 86 ++++----- man/data_mccabemichael_brain.Rd | 130 +++++++-------- man/data_mccabemichael_brain2.Rd | 68 +++---- man/data_meditationbrain.Rd | 92 +++++----- man/data_organicmoral.Rd | 92 +++++----- man/data_penlaptop1.Rd | 52 +++--- man/data_powerperformance_ma.Rd | 94 +++++----- man/data_rattanmotivation.Rd | 82 ++++----- man/data_religionsharing.Rd | 67 ++++--- man/data_religious_belief.Rd | 54 +++--- man/data_selfexplain.Rd | 78 ++++----- man/data_simmonscredibility.Rd | 120 ++++++------- man/data_sleep_beauty.Rd | 58 +++--- man/data_smithrecall.Rd | 54 +++--- man/data_stickgold.Rd | 74 ++++---- man/data_studystrategies.Rd | 82 ++++----- man/data_thomason_1.Rd | 60 +++--- man/data_videogameaggression.Rd | 74 ++++---- man/estimate_magnitude.Rd | 4 man/estimate_mdiff_one.Rd | 4 man/estimate_pdiff_one.Rd | 2 man/estimate_proportion.Rd | 2 man/estimate_r.Rd | 312 ++++++++++++++++++------------------ man/jamovidescribe.Rd | 5 man/overview.Rd | 4 70 files changed, 2147 insertions(+), 2124 deletions(-)
Title: Official R API for Fetching Data from 'EODHD'
Description: Second and backward-incompatible version of R package 'eodhd' <https://eodhd.com/>, extended with a cache and quota system,
also offering functions for cleaning and aggregating the financial data.
Author: Marcelo S. Perlin [aut, cre, ctr],
Unicorn Data Services [cph]
Maintainer: Marcelo S. Perlin <marceloperlin@gmail.com>
Diff between eodhdR2 versions 0.5.0 dated 2024-09-03 and 0.5.1 dated 2024-09-12
DESCRIPTION | 6 +- MD5 | 20 +++++--- NAMESPACE | 2 NEWS.md | 7 ++- R/base-query.R | 3 - R/cache.R | 2 R/ipos.R |only R/news.R |only README.md | 70 +++++++++++++++---------------- man/figures/README-unnamed-chunk-6-1.png |binary man/get_ipos.Rd |only man/get_news.Rd |only tests/testthat/test-ipos.R |only tests/testthat/test-news.R |only 14 files changed, 62 insertions(+), 48 deletions(-)
Title: Beta Regression
Description: Beta regression for modeling beta-distributed dependent variables on the open unit interval (0, 1),
e.g., rates and proportions, see Cribari-Neto and Zeileis (2010) <doi:10.18637/jss.v034.i02>.
Moreover, extended-support beta regression models can accommodate dependent variables with
boundary observations at 0 and/or 1. For the classical beta regression model, alternative specifications are
provided: Bias-corrected and bias-reduced estimation, finite mixture models, and recursive partitioning for
beta regression, see Grün, Kosmidis, and Zeileis (2012) <doi:10.18637/jss.v048.i11>.
Author: Achim Zeileis [aut, cre] ,
Francisco Cribari-Neto [aut] ,
Bettina Gruen [aut] ,
Ioannis Kosmidis [aut] ,
Alexandre B. Simas [ctb] ,
Andrea V. Rocha [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between betareg versions 3.2-0 dated 2024-07-07 and 3.2-1 dated 2024-09-12
betareg-3.2-0/betareg/inst/doc/betareg-ext.Rnw |only betareg-3.2-0/betareg/inst/doc/betareg-ext.pdf |only betareg-3.2-0/betareg/inst/doc/betareg.Rnw |only betareg-3.2-0/betareg/inst/doc/betareg.pdf |only betareg-3.2-0/betareg/vignettes/betareg-ext.Rnw |only betareg-3.2-0/betareg/vignettes/betareg.Rnw |only betareg-3.2-1/betareg/DESCRIPTION | 29 betareg-3.2-1/betareg/MD5 | 66 - betareg-3.2-1/betareg/NEWS.md | 17 betareg-3.2-1/betareg/R/betareg.R | 92 - betareg-3.2-1/betareg/README.md | 129 +- betareg-3.2-1/betareg/build/vignette.rds |binary betareg-3.2-1/betareg/inst/CITATION | 10 betareg-3.2-1/betareg/inst/doc/betareg-ext.R | 253 +--- betareg-3.2-1/betareg/inst/doc/betareg-ext.html |only betareg-3.2-1/betareg/inst/doc/betareg-ext.qmd |only betareg-3.2-1/betareg/inst/doc/betareg.R | 287 +--- betareg-3.2-1/betareg/inst/doc/betareg.html |only betareg-3.2-1/betareg/inst/doc/betareg.qmd |only betareg-3.2-1/betareg/man/CarTask.Rd | 5 betareg-3.2-1/betareg/man/ImpreciseTask.Rd | 11 betareg-3.2-1/betareg/man/LossAversion.Rd | 31 betareg-3.2-1/betareg/man/MockJurors.Rd | 4 betareg-3.2-1/betareg/man/ReadingSkills.Rd | 11 betareg-3.2-1/betareg/man/StressAnxiety.Rd | 2 betareg-3.2-1/betareg/man/WeatherTask.Rd | 11 betareg-3.2-1/betareg/man/betamix.Rd | 8 betareg-3.2-1/betareg/man/betareg.Rd | 3 betareg-3.2-1/betareg/man/betatree.Rd | 6 betareg-3.2-1/betareg/man/gleverage.Rd | 6 betareg-3.2-1/betareg/man/plot.betareg.Rd | 4 betareg-3.2-1/betareg/man/predict.betareg.Rd | 62 - betareg-3.2-1/betareg/man/residuals.betareg.Rd | 19 betareg-3.2-1/betareg/man/summary.betareg.Rd | 6 betareg-3.2-1/betareg/tests/Examples/betareg-Ex.Rout.save | 18 betareg-3.2-1/betareg/vignettes/betareg-ext.Rout.save | 186 +-- betareg-3.2-1/betareg/vignettes/betareg-ext.qmd |only betareg-3.2-1/betareg/vignettes/betareg.Rout.save | 219 +-- betareg-3.2-1/betareg/vignettes/betareg.bib | 839 +++++++------- betareg-3.2-1/betareg/vignettes/betareg.qmd |only 40 files changed, 1144 insertions(+), 1190 deletions(-)
Title: Multi-Format Archive and Compression Support
Description: Bindings to 'libarchive' <http://www.libarchive.org> the
Multi-format archive and compression library. Offers R connections and
direct extraction for many archive formats including 'tar', 'ZIP',
'7-zip', 'RAR', 'CAB' and compression formats including 'gzip',
'bzip2', 'compress', 'lzma' and 'xz'.
Author: Jim Hester [aut] ,
Gabor Csardi [aut, cre],
Ondrej Holy [cph] ,
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between archive versions 1.1.8 dated 2024-04-28 and 1.1.9 dated 2024-09-12
archive-1.1.8/archive/tests/version.R |only archive-1.1.8/archive/tests/version.Rout.save |only archive-1.1.9/archive/DESCRIPTION | 6 archive-1.1.9/archive/MD5 | 40 archive-1.1.9/archive/NEWS.md | 4 archive-1.1.9/archive/src/cpp11/include/cpp11/R.hpp | 69 archive-1.1.9/archive/src/cpp11/include/cpp11/data_frame.hpp | 12 archive-1.1.9/archive/src/cpp11/include/cpp11/doubles.hpp | 123 archive-1.1.9/archive/src/cpp11/include/cpp11/environment.hpp | 10 archive-1.1.9/archive/src/cpp11/include/cpp11/external_pointer.hpp | 8 archive-1.1.9/archive/src/cpp11/include/cpp11/function.hpp | 56 archive-1.1.9/archive/src/cpp11/include/cpp11/integers.hpp | 117 archive-1.1.9/archive/src/cpp11/include/cpp11/list.hpp | 134 - archive-1.1.9/archive/src/cpp11/include/cpp11/list_of.hpp | 4 archive-1.1.9/archive/src/cpp11/include/cpp11/logicals.hpp | 117 archive-1.1.9/archive/src/cpp11/include/cpp11/matrix.hpp | 5 archive-1.1.9/archive/src/cpp11/include/cpp11/protect.hpp | 156 - archive-1.1.9/archive/src/cpp11/include/cpp11/r_bool.hpp | 2 archive-1.1.9/archive/src/cpp11/include/cpp11/r_vector.hpp | 1312 ++++++---- archive-1.1.9/archive/src/cpp11/include/cpp11/raws.hpp | 129 archive-1.1.9/archive/src/cpp11/include/cpp11/sexp.hpp | 36 archive-1.1.9/archive/src/cpp11/include/cpp11/strings.hpp | 129 22 files changed, 1330 insertions(+), 1139 deletions(-)
Title: Import, Manipulate and Explore the Results of an 'Antares'
Simulation
Description: Import, manipulate and explore results generated by 'Antares', a
powerful open source software developed by RTE (Réseau de Transport d’Électricité) to simulate and study electric power systems
(more information about 'Antares' here : <https://antares-simulator.org/>).
Author: Tatiana Vargas [aut, cre],
Jalal-Edine ZAWAM [aut],
Frederic Breant [ctb],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
Victor Perrier [ctb],
Etienne Sanchez [ctb],
Assil Mansouri [ctb],
Clement Berthet [ctb],
Kamel Kemiha [c [...truncated...]
Maintainer: Tatiana Vargas <tatiana.vargas@rte-france.com>
Diff between antaresRead versions 2.7.1 dated 2024-08-30 and 2.7.2 dated 2024-09-12
DESCRIPTION | 6 MD5 | 50 +- NAMESPACE | 2 NEWS.md | 19 + R/importOutput.R | 26 - R/readAntares.R | 4 R/readAntaresClusters.R | 54 +++ R/readBindingConstraints.R | 2 R/readClusterDesc.R | 203 ++++++++--- R/setSimulationPathAPI.R |only R/utils.R | 1 R/utils_api.R | 448 -------------------------- R/zzz.R | 32 + inst/doc/antaresRead.html | 4 inst/referential_properties |only man/readAntares.Rd | 2 man/readAntaresSTClusters.Rd |only man/readClusterDesc.Rd | 2 man/setSimulationPath.Rd | 2 tests/testthat/helper_init.R | 1 tests/testthat/test-importOutputForClusters.R | 124 +++---- tests/testthat/test-readAntares_STclusters.R | 58 ++- tests/testthat/test-readBindingConstraints.R | 1 tests/testthat/test-readClusterDesc.R | 83 +++- tests/testthat/test-readInputClusters.R | 32 + tests/testthat/test-setSimulationPath.R | 1 26 files changed, 516 insertions(+), 641 deletions(-)
Title: Combine Multidimensional Arrays
Description: Combine multidimensional arrays into a single array.
This is a generalization of 'cbind' and 'rbind'. Works with
vectors, matrices, and higher-dimensional arrays (aka tensors).
Also provides functions 'adrop', 'asub', and 'afill' for
manipulating, extracting and replacing data in arrays.
Author: Tony Plate [aut, cre],
Richard Heiberger [aut]
Maintainer: Tony Plate <tplate@acm.org>
Diff between abind versions 1.4-5 dated 2016-07-21 and 1.4-8 dated 2024-09-12
abind-1.4-5/abind/inst |only abind-1.4-8/abind/ChangeLog | 10 ++++ abind-1.4-8/abind/DESCRIPTION | 20 +++++---- abind-1.4-8/abind/LICENSE |only abind-1.4-8/abind/MD5 | 27 ++++++------- abind-1.4-8/abind/NAMESPACE | 1 abind-1.4-8/abind/R/abind.R | 32 +++++++-------- abind-1.4-8/abind/R/acorn.R | 10 ++-- abind-1.4-8/abind/R/adrop.R | 2 abind-1.4-8/abind/R/afill.R | 12 ++--- abind-1.4-8/abind/R/asub.R | 6 +- abind-1.4-8/abind/man/abind.Rd | 6 +- abind-1.4-8/abind/man/asub.Rd | 2 abind-1.4-8/abind/tests/afill.R | 17 -------- abind-1.4-8/abind/tests/afill.Rout.save | 65 +++++++------------------------- 15 files changed, 85 insertions(+), 125 deletions(-)
Title: Blind Source Separation Methods for Tensor-Valued Observations
Description: Contains several utility functions for manipulating tensor-valued data (centering, multiplication from a single mode etc.) and the implementations of the following blind source separation methods for tensor-valued data: 'tPCA', 'tFOBI', 'tJADE', k-tJADE', 'tgFOBI', 'tgJADE', 'tSOBI', 'tNSS.SD', 'tNSS.JD', 'tNSS.TD.JD', 'tPP' and 'tTUCKER'.
Author: Joni Virta [aut, cre] ,
Christoph L. Koesner [aut] ,
Bing Li [aut],
Klaus Nordhausen [aut] ,
Hannu Oja [aut],
Una Radojicic [aut]
Maintainer: Joni Virta <joni.virta@outlook.com>
Diff between tensorBSS versions 0.3.8 dated 2021-06-02 and 0.3.9 dated 2024-09-12
DESCRIPTION | 8 +-- MD5 | 16 +++--- R/RcppExports.R | 118 +++++++++++++++++++++++------------------------ R/tPCAaug.R | 2 build/partial.rdb |binary inst/ChangeLog | 6 +- man/tPCAaug.Rd | 7 +- man/tensorBSS-package.Rd | 8 ++- src/RcppExports.cpp | 5 + 9 files changed, 93 insertions(+), 77 deletions(-)
Title: Genetic Analysis of Pooled Samples
Description: Analyzing genetic data obtained from pooled samples.
This package can read in Fragment Analysis output files, process the data,
and score peaks, as well as facilitate various analyses, including cluster
analysis, calculation of genetic distances and diversity indices,
as well as bootstrap resampling for statistical inference. Specifically
tailored to handle genetic data efficiently, researchers can explore
population structure, genetic differentiation, and genetic relatedness
among samples. We updated some functions from Covarrubias-Pazaran et al.
(2016) <doi:10.1186/s12863-016-0365-6> to allow for the use of new file formats
and referenced the following to write our genetic analysis functions:
Long et al. (2022) <doi:10.1038/s41598-022-04776-0>, Jost (2008)
<doi:10.1111/j.1365-294x.2008.03887.x>, Nei (1973)
<doi:10.1073/pnas.70.12.3321>, Foulley et al. (2006)
<doi:10.1016/j.livprodsci.2005.10.021>, Chao et al. (2008)
<doi:10.1111/j.1541-0420.2008.01010 [...truncated...]
Author: Kathleen Kuesters [aut, cre, cph]
,
Jeffrey Long [aut],
Jessica Blanton [aut],
Walter Blank [ctb],
Jeffrey Kovach [ctb],
Ronald Blanton [ctb]
Maintainer: Kathleen Kuesters <kathleen.kuesters@gmail.com>
Diff between pooledpeaks versions 1.0.5 dated 2024-09-03 and 1.0.6 dated 2024-09-12
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- NEWS.md | 2 ++ man/pooledpeaks-package.Rd | 8 ++++++-- tests/testthat/test-Replicate_check.R | 5 +++-- 5 files changed, 22 insertions(+), 15 deletions(-)
Title: Mobility Network Analysis
Description: Implements the method to analyse weighted mobility networks or distribution networks as outlined in:
Block, P., Stadtfeld, C., & Robins, G. (2022) <doi:10.1016/j.socnet.2021.08.003>.
The purpose of the model is to analyse the structure of mobility,
incorporating exogenous predictors pertaining to individuals and locations
known from classical mobility analyses, as well as modelling emergent mobility
patterns akin to structural patterns known from the statistical analysis of social networks.
Author: Per Block [cre, aut, cph] ,
Christoph Stadtfeld [aut] ,
Nico Keiser [aut] ,
Marion Hoffman [aut]
Maintainer: Per Block <block@soziologie.uzh.ch>
Diff between MoNAn versions 1.0.0 dated 2024-04-25 and 1.1.0 dated 2024-09-12
DESCRIPTION | 18 - MD5 | 57 ++-- NAMESPACE | 14 - NEWS.md | 13 + R/1_hiddenFunctions.R | 2 R/2_effectFunctions.R | 73 +++++ R/2b_effectFunctions_loops.R | 81 ++++++ R/2c_effectFunctions_concentration.R | 293 +++++++++++++++++++++++- R/2d_effectFunctions_reciprocity.R | 195 +++++++++++++++ R/2e_effectFunctions_transitivity.R | 81 ++++++ R/2f_effectFunctions_endogenousCovariateBased.R | 170 +++++++++++++ R/4_auxiliaryFunctions.R | 188 +++++++++------ README.md | 188 ++++----------- build/partial.rdb |binary data/myEffects.rda |binary data/myResDN.rda |binary data/mySimDN.rda |binary man/MoNAn-package.Rd | 4 man/associativity_all_AC_covar_bin.Rd |only man/associativity_one_AC_covar_bin.Rd |only man/concentration_AC.Rd |only man/concentration_AC_dyad_covar.Rd |only man/concentration_AC_resource_covar_bin.Rd |only man/concentration_basic_cube.Rd |only man/figures/README-unnamed-chunk-18-1.png |binary man/figures/README-unnamed-chunk-18-2.png |binary man/figures/README-unnamed-chunk-18-3.png |binary man/figures/README-unnamed-chunk-18-4.png |only man/figures/README-unnamed-chunk-20-1.png |binary man/figures/README-unnamed-chunk-20-2.png |binary man/in_weights_AC.Rd |only man/loops_AC.Rd |only man/reciprocity_AC.Rd |only man/reciprocity_AC_dyad_covar.Rd |only man/reciprocity_AC_dyad_covar_bin.Rd |only man/transitivity_AC.Rd |only 36 files changed, 1119 insertions(+), 258 deletions(-)
Title: Create ToxPi Prioritization Models
Description: Enables users to build 'ToxPi' prioritization models and provides
functionality within the grid framework for plotting ToxPi graphs.
'toxpiR' allows for more customization than the 'ToxPi GUI'
(<https://toxpi.org>) and integration into existing workflows for greater
ease-of-use, reproducibility, and transparency.
toxpiR package behaves nearly identically to the GUI; the package
documentation includes notes about all differences.
The vignettes download example files from
<https://github.com/ToxPi/ToxPi-example-files>.
Author: Jonathon F Fleming [aut, cre] ,
Dayne L Filer [aut, fnd] ,
Dillon T Lloyd [aut],
Preethi Thunga [aut] ,
Skylar W Marvel [aut],
Alison A Motsinger-Reif [fnd] ,
David M Reif [aut, fnd]
Maintainer: Jonathon F Fleming <jffleming0129@gmail.com>
Diff between toxpiR versions 1.2.1 dated 2022-07-20 and 1.3.0 dated 2024-09-12
DESCRIPTION | 23 MD5 | 158 - NAMESPACE | 174 - NEWS.md | 29 R/allClasses.R | 259 +- R/allGenerics.R | 141 - R/methods-NamedList.R | 56 R/methods-TxpModel.R | 516 ++--- R/methods-TxpModelList.R | 286 +- R/methods-TxpResult-plot.R | 643 ++++-- R/methods-TxpResult.R | 730 +++---- R/methods-TxpResultList.R | 194 - R/methods-TxpResultParam.R | 180 - R/methods-TxpSlice.R | 376 +-- R/methods-TxpSliceList.R | 250 +- R/methods-TxpTransFunc.R | 260 +- R/methods-TxpTransFuncList.R | 242 +- R/plotting-annScatterGrob.R | 188 - R/plotting-boxLegendGrob.R | 106 - R/plotting-pieGridGrob.R | 374 +-- R/plotting-pieGrob.R | 268 +- R/toxpiR-package.R | 127 - R/txpCalculateScores.R | 236 +- R/txpExportGui.R | 316 +-- R/txpImportGui.R | 260 +- R/utils.R | 138 - build/vignette.rds |binary inst/doc/exportToGui.R | 106 - inst/doc/exportToGui.html | 1717 ++++++++--------- inst/doc/exportToGui.rmd | 220 +- inst/doc/importFromGui.R | 122 - inst/doc/importFromGui.Rmd | 192 - inst/doc/importFromGui.html | 931 ++++----- inst/doc/introduction.R | 428 +++- inst/doc/introduction.Rmd | 900 ++++++-- inst/doc/introduction.html | 1694 ++++++++++------ man/TxpModel-class.Rd | 270 +- man/TxpModelList-class.Rd | 122 - man/TxpResult-class.Rd | 477 ++-- man/TxpResult-plot.Rd | 247 +- man/TxpResultList-class.Rd | 106 - man/TxpResultParam-class.Rd | 86 man/TxpSlice-class.Rd | 234 +- man/TxpSliceList-class.Rd | 154 - man/TxpTransFunc-class.Rd | 104 - man/TxpTransFuncList-class.Rd | 120 - man/boxLegendGrob.Rd | 56 man/pieGridGrob.Rd | 182 - man/pieGrob.Rd | 102 - man/toxpiR-datasets.Rd | 108 - man/toxpiR-package.Rd | 75 man/txpCalculateScores.Rd | 173 - man/txpExportGui.Rd | 90 man/txpGenerics.Rd | 133 - man/txpImportGui.Rd | 54 tests/testthat.R | 8 tests/testthat/Rplots.pdf |binary tests/testthat/guiFiles/gui_bad_input.csv | 28 tests/testthat/guiFiles/gui_distributions.csv | 2016 ++++++++++---------- tests/testthat/guiFiles/gui_output_data.csv | 34 tests/testthat/guiFiles/gui_output_missingFuncs.csv | 34 tests/testthat/guiFiles/gui_output_nonNumeric.csv | 34 tests/testthat/guiFiles/gui_test_data.csv | 132 - tests/testthat/guiFiles/gui_test_results.csv | 52 tests/testthat/test-TxpModel.R | 246 +- tests/testthat/test-TxpModelList.R | 134 - tests/testthat/test-TxpResult.R | 384 +-- tests/testthat/test-TxpResultList.R | 256 +- tests/testthat/test-TxpSlice.R | 160 - tests/testthat/test-TxpSliceList.R | 148 - tests/testthat/test-TxpTransFunc.R | 50 tests/testthat/test-TxpTransFuncList.R | 148 - tests/testthat/test-txpExportGui.R | 168 - tests/testthat/test-txpImportGui.R | 54 tests/testthat/test-vsGuiResults.R | 284 +- vignettes/embeddedFigures/coord_munch_new.png |only vignettes/embeddedFigures/coord_munch_orig.png |only vignettes/embeddedFigures/txp_PDF.pdf |only vignettes/embeddedFigures/txp_explain1.png |only vignettes/exportToGui.rmd | 220 +- vignettes/importFromGui.Rmd | 192 - vignettes/introduction.Rmd | 900 ++++++-- 82 files changed, 11585 insertions(+), 9830 deletions(-)
Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit
conversion and formatting of Global Surface Summary of the Day
('GSOD') weather data from the from the USA National Centers for
Environmental Information ('NCEI'). Units are converted from from
United States Customary System ('USCS') units to International System
of Units ('SI'). Stations may be individually checked for number of
missing days defined by the user, where stations with too many missing
observations are omitted. Only stations with valid reported latitude
and longitude values are permitted in the final data. Additional
useful elements, saturation vapour pressure ('es'), actual vapour
pressure ('ea') and relative humidity ('RH') are calculated from the
original data using the improved August-Roche-Magnus approximation
(Alduchov & Eskridge 1996) and included in the final data set. The
resulting metadata include station identification information,
country, state, latitude, longitude, elevation, weather observatio [...truncated...]
Author: Adam H. Sparks [aut, cre] ,
Tomislav Hengl [aut] ,
Andrew Nelson [aut] ,
Hugh Parsonage [cph, ctb] ,
Taras Kaduk [ctb] ,
Gwenael Giboire [ctb] ,
Lukasz Pawlik [ctb] ,
Ross Darnell [ctb] ,
Tyler Widdison [ctb] ` did not
return stations in order of nea [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 4.1.1 dated 2024-07-23 and 4.1.2 dated 2024-09-12
DESCRIPTION | 12 +++--- MD5 | 16 ++++---- NEWS.md | 10 ++++- R/internal_functions.R | 25 +++++++++--- README.md | 85 +++++++++++++++++++++++++++---------------- inst/WORDLIST | 10 ++++- inst/extdata/isd_diff.rda |binary inst/extdata/isd_history.rda |binary man/GSODR-package.Rd | 1 9 files changed, 106 insertions(+), 53 deletions(-)
Title: Fisher's z-Tests Concerning Differences Between Correlations
Description: Computations of Fisher's z-tests concerning different kinds of correlation differences. The 'diffpwr' family entails approaches to estimating statistical power via Monte Carlo simulations. Important to note, the Pearson correlation coefficient is sensitive to linear association, but also to a host of statistical issues such as univariate and bivariate outliers, range restrictions, and heteroscedasticity (e.g., Duncan & Layard, 1973 <doi:10.1093/BIOMET/60.3.551>; Wilcox, 2013 <doi:10.1016/C2010-0-67044-1>). Thus, every power analysis requires that specific statistical prerequisites are fulfilled and can be invalid if the prerequisites do not hold. To this end, the 'bootcor' family provides bootstrapping confidence intervals for the incorporated correlation difference tests.
Author: Christian Bloetner [aut, cre]
Maintainer: Christian Bloetner <c.bloetner@gmail.com>
Diff between diffcor versions 0.8.3 dated 2024-05-03 and 0.8.4 dated 2024-09-12
DESCRIPTION | 18 +++++++++++------- MD5 | 14 ++++++++++---- NAMESPACE | 2 +- R/bootcor.dep.R |only R/bootcor.one.R |only R/bootcor.two.R |only man/bootcor.dep.Rd |only man/bootcor.one.Rd |only man/bootcor.two.Rd |only man/diffpwr.one.Rd | 8 ++++---- man/diffpwr.two.Rd | 2 +- 11 files changed, 27 insertions(+), 17 deletions(-)
Title: Custom Gov Style Inputs for Shiny
Description: Collection of 'shiny' application styling that are the based
on the GOV.UK Design System. See
<https://design-system.service.gov.uk/components/> for details.
Author: Ross Wyatt [aut, cre],
Cameron Race [ctb],
Sarah Wong [ctb],
Richard Bielby [ctb],
Charlotte Foster [ctb],
Jeni Martin [ctb]
Maintainer: Ross Wyatt <ross.wyatt@justice.gov.uk>
Diff between shinyGovstyle versions 0.0.8 dated 2022-02-22 and 0.1.0 dated 2024-09-12
DESCRIPTION | 41 MD5 | 79 NAMESPACE | 3 NEWS.md | 10 R/accordion.R | 1 R/attachDependency.R | 12 R/backlink_Input.R | 10 R/banner.R | 2 R/clean_heading_text.R |only R/contents_links.R |only R/cookieBanner.R | 14 R/govTabs.R | 2 R/header.R | 2 R/heading_text.R | 11 R/run_example.R | 274 + R/tag.R | 4 R/utils-pipe.R |only R/warning_text.R | 2 README.md | 178 + inst/www/css/font.css | 5 inst/www/css/govuk-frontend-norem.css | 5198 ++++++++++++++++-------------- inst/www/fonts/bold-affa96571d-v2.woff |only inst/www/fonts/bold-b542beb274-v2.woff2 |only inst/www/fonts/light-94a07e06a1-v2.woff2 |only inst/www/fonts/light-f591b13f7d-v2.woff |only inst/www/images/favicon.ico |only inst/www/images/favicon.svg |only inst/www/images/govuk-icon-180.png |only inst/www/images/govuk-icon-192.png |only inst/www/images/govuk-icon-512.png |only inst/www/images/govuk-icon-mask.svg |only inst/www/images/govuk-opengraph-image.png |only inst/www/js/accordion.js | 87 inst/www/js/contents_link.js |only inst/www/js/govuk-frontend-5.4.0.min.js |only man/backlink_Input.Rd | 4 man/banner.Rd | 2 man/clean_heading_text.Rd |only man/contents_link.Rd |only man/cookieBanner.Rd | 2 man/figures/accordion.png |binary man/figures/contents_link.png |only man/figures/header_text.png |only man/figures/tags.png |binary man/heading_text.Rd | 4 man/pipe.Rd |only man/subcontents_links.Rd |only man/tag_Input.Rd | 4 tests/testthat/test-backlink_Input.R | 2 tests/testthat/test-clean_heading_text.R |only tests/testthat/test-contents_links.R |only tests/testthat/test-subcontents_links.R |only tests/testthat/test-tag.R | 6 53 files changed, 3545 insertions(+), 2414 deletions(-)
Title: Automatic Calculation of Effects for Piecewise Structural
Equation Models
Description: Automatically calculate direct, indirect, and total effects for
piecewise structural equation models, comprising lists of fitted models
representing structured equations (Lefcheck, 2016 <doi:10/f8s8rb>).
Confidence intervals are provided via bootstrapping.
Author: Mark V. Murphy [aut, cre]
Maintainer: Mark V. Murphy <murphymv@gmail.com>
Diff between semEff versions 0.6.1 dated 2022-08-22 and 0.7.2 dated 2024-09-12
DESCRIPTION | 13 MD5 | 47 NAMESPACE | 6 NEWS.md | 33 R/bootEff-fun.R | 26 R/semEff-fun.R | 424 ++-- R/stdEff-fun.R | 63 README.md | 33 build/partial.rdb |binary build/vignette.rds |binary data/shipley.rda |binary inst/doc/predicting-effects.html | 313 +-- inst/doc/semEff.html | 421 ++-- man/R2.Rd | 12 man/VIF.Rd | 6 man/bootCI.Rd | 6 man/bootEff.Rd | 18 man/getEff.Rd | 47 man/getFamily.Rd |only man/predEff.Rd | 9 man/print.semEff.Rd | 7 man/semEff-package.Rd | 2 man/semEff.Rd | 19 vignettes/apa.csl | 3832 +++++++++++++++++++-------------------- vignettes/references.bib | 96 25 files changed, 2768 insertions(+), 2665 deletions(-)
Title: Price Index Aggregation
Description: Most price indexes are made with a two-step procedure, where
period-over-period elemental indexes are first calculated for a collection
of elemental aggregates at each point in time, and then aggregated according
to a price index aggregation structure. These indexes can then be chained
together to form a time series that gives the evolution of prices with
respect to a fixed base period. This package contains a collection of
functions that revolve around this work flow, making it easy to build
standard price indexes, and implement the methods described by
Balk (2008, <doi:10.1017/CBO9780511720758>), von der Lippe (2007,
<doi:10.3726/978-3-653-01120-3>), and the CPI manual (2020,
<doi:10.5089/9781484354841.069>) for bilateral price indexes.
Author: Steve Martin [aut, cre, cph]
Maintainer: Steve Martin <marberts@protonmail.com>
Diff between piar versions 0.7.0 dated 2024-03-08 and 0.8.1 dated 2024-09-12
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Title: Deep Learning with 'mlr3'
Description: Deep Learning library that extends the mlr3 framework by building
upon the 'torch' package. It allows to conveniently build, train,
and evaluate deep learning models without having to worry about low level
details. Custom architectures can be created using the graph language
defined in 'mlr3pipelines'.
Author: Sebastian Fischer [cre, aut] ,
Bernd Bischl [ctb] ,
Lukas Burk [ctb] ,
Martin Binder [aut],
Florian Pfisterer [ctb]
Maintainer: Sebastian Fischer <sebf.fischer@gmail.com>
Diff between mlr3torch versions 0.1.0 dated 2024-07-08 and 0.1.1 dated 2024-09-12
mlr3torch-0.1.0/mlr3torch/man/figures/logo.png |only mlr3torch-0.1.0/mlr3torch/tests/testthat/TODO.md |only mlr3torch-0.1.1/mlr3torch/DESCRIPTION | 11 mlr3torch-0.1.1/mlr3torch/MD5 | 249 +++++----- mlr3torch-0.1.1/mlr3torch/NAMESPACE | 1 mlr3torch-0.1.1/mlr3torch/NEWS.md | 10 mlr3torch-0.1.1/mlr3torch/R/LearnerTorch.R | 14 mlr3torch-0.1.1/mlr3torch/R/LearnerTorchMLP.R | 12 mlr3torch-0.1.1/mlr3torch/R/LearnerTorchTabResNet.R | 2 mlr3torch-0.1.1/mlr3torch/R/PipeOpTaskPreprocTorch.R | 10 mlr3torch-0.1.1/mlr3torch/R/PipeOpTorchIngress.R | 5 mlr3torch-0.1.1/mlr3torch/R/PipeOpTorchReshape.R | 2 mlr3torch-0.1.1/mlr3torch/R/TorchDescriptor.R | 2 mlr3torch-0.1.1/mlr3torch/R/materialize.R | 2 mlr3torch-0.1.1/mlr3torch/R/nn.R |only mlr3torch-0.1.1/mlr3torch/R/paramset_torchlearner.R | 15 mlr3torch-0.1.1/mlr3torch/R/preprocess.R | 4 mlr3torch-0.1.1/mlr3torch/R/utils.R | 2 mlr3torch-0.1.1/mlr3torch/R/with_torch_settings.R | 11 mlr3torch-0.1.1/mlr3torch/R/zzz.R | 4 mlr3torch-0.1.1/mlr3torch/README.md | 17 mlr3torch-0.1.1/mlr3torch/build/partial.rdb |binary mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentCenterCrop.Rd | 4 mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentColorJitter.Rd | 4 mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentCrop.Rd | 4 mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentHflip.Rd | 4 mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentRandomAffine.Rd | 4 mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentRandomChoice.Rd | 4 mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentRandomCrop.Rd | 4 mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentRandomHorizontalFlip.Rd | 4 mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentRandomOrder.Rd | 4 mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentRandomResizedCrop.Rd | 4 mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentRandomVerticalFlip.Rd | 4 mlr3torch-0.1.1/mlr3torch/man/PipeOpPreprocTorchAugmentResizedCrop.Rd | 4 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Title: Geometrically Designed Spline Regression
Description: Spline Regression, Generalized Additive Models, and Component-wise Gradient
Boosting, utilizing Geometrically Designed (GeD) Splines. GeDS regression is a
non-parametric method inspired by geometric principles, for fitting spline regression
models with variable knots in one or two independent variables. It efficiently estimates
the number of knots and their positions, as well as the spline order, assuming the
response variable follows a distribution from the exponential family. GeDS models
integrate the broader category of Generalized (Non-)Linear Models, offering a flexible
approach to modeling complex relationships. A description of the method can be found in
Kaishev et al. (2016) <doi:10.1007/s00180-015-0621-7> and Dimitrova et al. (2023)
<doi:10.1016/j.amc.2022.127493>. Further extending its capabilities, GeDS's implementation
includes Generalized Additive Models (GAM) and Functional Gradient Boosting (FGB),
enabling versatile multivariate predictor modeling, as discuss [...truncated...]
Author: Dimitrina S. Dimitrova [aut],
Emilio S. Guillen [aut, cre],
Vladimir K. Kaishev [aut],
Andrea Lattuada [aut],
Richard J. Verrall [aut]
Maintainer: Emilio S. Guillen <Emilio.Saenz-Guillen@bayes.city.ac.uk>
Diff between GeDS versions 0.2.3 dated 2024-07-19 and 0.2.4 dated 2024-09-12
GeDS-0.2.3/GeDS/man/plot.GeDSboost.Rd |only GeDS-0.2.4/GeDS/DESCRIPTION | 40 - GeDS-0.2.4/GeDS/MD5 | 107 +- GeDS-0.2.4/GeDS/NAMESPACE | 5 GeDS-0.2.4/GeDS/R/BivariateFitter.R | 68 - GeDS-0.2.4/GeDS/R/GGeDS.R | 88 +- GeDS-0.2.4/GeDS/R/GeDS-package.R | 55 - GeDS-0.2.4/GeDS/R/GeDSClass.R | 201 ++--- GeDS-0.2.4/GeDS/R/IRLSfit.R | 23 GeDS-0.2.4/GeDS/R/IntegrateDerive.R | 4 GeDS-0.2.4/GeDS/R/NGeDS.R | 6 GeDS-0.2.4/GeDS/R/NGeDSboost.R | 118 +-- GeDS-0.2.4/GeDS/R/NGeDSgam.R | 121 +-- GeDS-0.2.4/GeDS/R/S3methods.R | 56 - GeDS-0.2.4/GeDS/R/S3methods_GeDSboost-GeDSgam.R | 857 ++++++++++++----------- GeDS-0.2.4/GeDS/R/SplineReg.R | 103 +- GeDS-0.2.4/GeDS/R/SplineReg_Multivar.R | 132 +-- GeDS-0.2.4/GeDS/R/SplineReg_biv.R | 42 - GeDS-0.2.4/GeDS/R/UnivariateFitter.R | 42 - GeDS-0.2.4/GeDS/R/cv_GeDSMethod.R | 18 GeDS-0.2.4/GeDS/R/dynlib.R | 13 GeDS-0.2.4/GeDS/R/helpers_NGeDSboost-NGeDSgam.R | 2 GeDS-0.2.4/GeDS/R/lines_GeDSMethod.R | 16 GeDS-0.2.4/GeDS/R/plot_GeDSMethod.R | 435 ++++++++++- GeDS-0.2.4/GeDS/R/read.formula.R | 49 - GeDS-0.2.4/GeDS/README.md | 2 GeDS-0.2.4/GeDS/build/partial.rdb |binary GeDS-0.2.4/GeDS/man/BaFe2As2.Rd | 7 GeDS-0.2.4/GeDS/man/BivariateFitters.Rd | 301 ++++---- GeDS-0.2.4/GeDS/man/Derive.Rd | 2 GeDS-0.2.4/GeDS/man/GGeDS.Rd | 86 +- GeDS-0.2.4/GeDS/man/GeDS-class.Rd | 87 +- GeDS-0.2.4/GeDS/man/GeDS-package.Rd | 55 - GeDS-0.2.4/GeDS/man/GeDSboost-class.Rd | 235 ++---- GeDS-0.2.4/GeDS/man/GeDSgam-class.Rd | 207 ++--- GeDS-0.2.4/GeDS/man/IRLSfit.Rd | 210 ++--- GeDS-0.2.4/GeDS/man/Integrate.Rd | 2 GeDS-0.2.4/GeDS/man/NGeDS.Rd | 4 GeDS-0.2.4/GeDS/man/NGeDSboost.Rd | 578 +++++++-------- GeDS-0.2.4/GeDS/man/NGeDSgam.Rd | 400 +++++----- GeDS-0.2.4/GeDS/man/SplineReg.Rd | 10 GeDS-0.2.4/GeDS/man/UnivariateFitters.Rd | 408 +++++----- GeDS-0.2.4/GeDS/man/bl_imp.Rd | 131 +-- GeDS-0.2.4/GeDS/man/coalMining.Rd | 6 GeDS-0.2.4/GeDS/man/coef.GeDSboost_GeDSgam.Rd | 112 +-- GeDS-0.2.4/GeDS/man/coef.Rd | 26 GeDS-0.2.4/GeDS/man/crossv_GeDS.Rd | 18 GeDS-0.2.4/GeDS/man/deviance.GeDS.Rd | 3 GeDS-0.2.4/GeDS/man/f.Rd | 2 GeDS-0.2.4/GeDS/man/formula.GeDS.Rd | 47 - GeDS-0.2.4/GeDS/man/plot-GeDS-method.Rd | 4 GeDS-0.2.4/GeDS/man/plot-GeDSboost-method.Rd |only GeDS-0.2.4/GeDS/man/plot-GeDSgam-method.Rd |only GeDS-0.2.4/GeDS/man/predict.GeDS.Rd | 2 GeDS-0.2.4/GeDS/man/predict.GeDSboost_GeDSgam.Rd | 124 ++- GeDS-0.2.4/GeDS/man/visualize_boosting.Rd | 124 +-- 56 files changed, 3203 insertions(+), 2591 deletions(-)
Title: Text Mining E-Mail Plug-in
Description: A plug-in for the tm text mining framework providing mail handling
functionality.
Author: Ingo Feinerer [aut] ,
Wolfgang Mauerer [aut],
Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tm.plugin.mail versions 0.3-0 dated 2024-08-16 and 0.3-1 dated 2024-09-12
DESCRIPTION | 6 ++-- MD5 | 8 ++--- NAMESPACE | 7 +++- R/reader.R | 85 ++++++++++++++++++++++++++++++++++++++++++++++++------------ R/zzz.R | 3 ++ 5 files changed, 84 insertions(+), 25 deletions(-)
More information about tm.plugin.mail at CRAN
Permanent link
Title: Inference for Panel Partially Observed Markov Processes
Description: Data analysis based on panel partially-observed Markov process (PanelPOMP) models. To implement such models, simulate them and fit them to panel data, 'panelPomp' extends some of the facilities provided for time series data by the 'pomp' package. Implemented methods include filtering (panel particle filtering) and maximum likelihood estimation (Panel Iterated Filtering) as proposed in Breto, Ionides and King (2020) "Panel Data Analysis via Mechanistic Models" <doi:10.1080/01621459.2019.1604367>.
Author: Carles Breto [aut] ,
Edward L. Ionides [aut] ,
Aaron A. King [aut] ,
Jesse Wheeler [aut, cre]
Maintainer: Jesse Wheeler <jeswheel@umich.edu>
Diff between panelPomp versions 1.1 dated 2023-03-29 and 1.4 dated 2024-09-12
panelPomp-1.1/panelPomp/R/package.R |only panelPomp-1.1/panelPomp/man/pparams.Rd |only panelPomp-1.1/panelPomp/man/unitlogLik.Rd |only panelPomp-1.1/panelPomp/man/unitobjects.Rd |only panelPomp-1.4/panelPomp/DESCRIPTION | 35 - panelPomp-1.4/panelPomp/MD5 | 145 ++-- panelPomp-1.4/panelPomp/NAMESPACE | 22 panelPomp-1.4/panelPomp/R/aaa.R | 2 panelPomp-1.4/panelPomp/R/generics.R | 153 +++- panelPomp-1.4/panelPomp/R/mif2.R | 33 - panelPomp-1.4/panelPomp/R/panelPomp-package.R |only panelPomp-1.4/panelPomp/R/panelPomp.R | 42 - panelPomp-1.4/panelPomp/R/panelPomp_methods.R | 327 ++++++++-- panelPomp-1.4/panelPomp/R/panel_designs.R |only panelPomp-1.4/panelPomp/R/panel_logmeanexp.R | 8 panelPomp-1.4/panelPomp/R/params.R | 94 -- panelPomp-1.4/panelPomp/R/pfilter.R | 34 - panelPomp-1.4/panelPomp/R/pfilter_methods.R | 102 ++- panelPomp-1.4/panelPomp/R/simulate.R | 4 panelPomp-1.4/panelPomp/README.md |only panelPomp-1.4/panelPomp/build/partial.rdb |binary panelPomp-1.4/panelPomp/build/vignette.rds |only panelPomp-1.4/panelPomp/inst/NEWS | 209 ++++++ panelPomp-1.4/panelPomp/inst/NEWS.Rd | 171 +++++ panelPomp-1.4/panelPomp/inst/doc |only panelPomp-1.4/panelPomp/man/as.Rd | 4 panelPomp-1.4/panelPomp/man/figures |only panelPomp-1.4/panelPomp/man/macros/newcommands.Rd | 4 panelPomp-1.4/panelPomp/man/mif2.Rd | 6 panelPomp-1.4/panelPomp/man/panel-designs.Rd |only panelPomp-1.4/panelPomp/man/panelPomp-package.Rd | 16 panelPomp-1.4/panelPomp/man/panelPomp.Rd | 4 panelPomp-1.4/panelPomp/man/panelPomp_methods.Rd | 80 +- panelPomp-1.4/panelPomp/man/panel_logmeanexp.Rd | 8 panelPomp-1.4/panelPomp/man/params.Rd | 25 panelPomp-1.4/panelPomp/man/pfilter.Rd | 16 panelPomp-1.4/panelPomp/man/pfilterd-setter.Rd |only panelPomp-1.4/panelPomp/man/shared-set.Rd |only panelPomp-1.4/panelPomp/man/shared.Rd |only panelPomp-1.4/panelPomp/man/specific-set.Rd |only panelPomp-1.4/panelPomp/man/specific.Rd |only panelPomp-1.4/panelPomp/man/unitLogLik.Rd |only panelPomp-1.4/panelPomp/man/unit_objects.Rd |only panelPomp-1.4/panelPomp/man/unitlogLik-deprecated.Rd |only panelPomp-1.4/panelPomp/man/unitlogLik-pfilterd.ppomp-method.Rd |only panelPomp-1.4/panelPomp/tests/_options.R | 2 panelPomp-1.4/panelPomp/tests/_options.Rout.save | 11 panelPomp-1.4/panelPomp/tests/aaa.Rout.save | 11 panelPomp-1.4/panelPomp/tests/contacts.Rout.save | 23 panelPomp-1.4/panelPomp/tests/get_col_row.Rout.save | 11 panelPomp-1.4/panelPomp/tests/mif2.R | 20 panelPomp-1.4/panelPomp/tests/mif2.Rout.save | 32 panelPomp-1.4/panelPomp/tests/mif2_intern.R | 8 panelPomp-1.4/panelPomp/tests/mif2_intern.Rout.save | 19 panelPomp-1.4/panelPomp/tests/mif2_methods.R | 15 panelPomp-1.4/panelPomp/tests/mif2_methods.Rout.save | 29 panelPomp-1.4/panelPomp/tests/panelGompertz.Rout.save | 23 panelPomp-1.4/panelPomp/tests/panelGompertzLikelihood.Rout.save | 11 panelPomp-1.4/panelPomp/tests/panelPomp.R | 8 panelPomp-1.4/panelPomp/tests/panelPomp.Rout.save | 39 - panelPomp-1.4/panelPomp/tests/panelPomp_methods.R | 37 - panelPomp-1.4/panelPomp/tests/panelPomp_methods.Rout.save | 58 + panelPomp-1.4/panelPomp/tests/panelRandomWalk.Rout.save | 23 panelPomp-1.4/panelPomp/tests/panel_designs.R |only panelPomp-1.4/panelPomp/tests/panel_designs.Rout.save |only panelPomp-1.4/panelPomp/tests/panel_loglik.Rout.save | 11 panelPomp-1.4/panelPomp/tests/params.R | 38 - panelPomp-1.4/panelPomp/tests/params.Rout.save | 52 + panelPomp-1.4/panelPomp/tests/pfilter.R | 39 - panelPomp-1.4/panelPomp/tests/pfilter.Rout.save | 53 + panelPomp-1.4/panelPomp/tests/pfilter_methods.R | 16 panelPomp-1.4/panelPomp/tests/pfilter_methods.Rout.save | 37 - panelPomp-1.4/panelPomp/tests/plot.Rout.save | 11 panelPomp-1.4/panelPomp/tests/print-results.Rout.save | 27 panelPomp-1.4/panelPomp/tests/seeded-results.R | 4 panelPomp-1.4/panelPomp/tests/seeded-results.Rout.save | 15 panelPomp-1.4/panelPomp/tests/simulate.R | 2 panelPomp-1.4/panelPomp/tests/simulate.Rout.save | 21 panelPomp-1.4/panelPomp/tests/specificShared.R |only panelPomp-1.4/panelPomp/tests/specificShared.Rout.save |only panelPomp-1.4/panelPomp/vignettes |only 81 files changed, 1645 insertions(+), 605 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of
use. Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions. Various
matrix decompositions are provided through optional integration with
LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the
header files from the templated 'Armadillo' library. Thus users do
not need to install 'Armadillo' itself in order to use
'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed
under Apache License 2; previous releases were under licensed as MPL
2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed
under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 14.0.0-1 dated 2024-07-08 and 14.0.2-1 dated 2024-09-12
ChangeLog | 25 +++++++++ DESCRIPTION | 25 +++++++-- MD5 | 54 ++++++++++----------- configure | 18 +++---- configure.ac | 2 inst/CITATION | 6 +- inst/NEWS.Rd | 13 +++++ inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/armadillo | 3 - inst/include/armadillo_bits/Cube_meat.hpp | 4 - inst/include/armadillo_bits/Mat_meat.hpp | 4 - inst/include/armadillo_bits/Proxy.hpp | 4 - inst/include/armadillo_bits/SpMat_meat.hpp | 4 - inst/include/armadillo_bits/arma_version.hpp | 2 inst/include/armadillo_bits/compiler_setup.hpp | 2 inst/include/armadillo_bits/config.hpp | 12 ---- inst/include/armadillo_bits/diskio_meat.hpp | 16 +++--- inst/include/armadillo_bits/field_meat.hpp | 4 - inst/include/armadillo_bits/fn_accu.hpp | 53 -------------------- inst/include/armadillo_bits/memory.hpp | 32 +++--------- inst/include/armadillo_bits/mul_gemm.hpp | 4 - inst/include/armadillo_bits/mul_gemv.hpp | 2 inst/include/armadillo_bits/mul_herk.hpp | 2 inst/include/armadillo_bits/mul_syrk.hpp | 2 inst/include/armadillo_bits/subview_field_meat.hpp | 3 - inst/include/armadillo_bits/subview_meat.hpp | 29 +++++++---- inst/include/armadillo_bits/unwrap.hpp | 2 28 files changed, 154 insertions(+), 173 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate, ?modify, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 1.0.3 dated 2024-03-29 and 1.1.2 dated 2024-09-11
DESCRIPTION | 14 MD5 | 376 +++++----- NAMESPACE | 6 R/append_units.R | 4 R/classified.R | 21 R/dvec.R | 1 R/io_csv.R | 2 R/sub_units.R | 2 R/vec_cast_dvec.R |only R/vec_classified.R |only R/vec_ptype2_dvec.R |only R/yamlet_options.R | 3 inst/doc/scripted-html.html | 4 inst/doc/scripted-pdf.pdf |binary inst/doc/yamlet-introduction.html | 4 man/alias.data.frame.Rd | 6 man/append_units.Rd | 4 man/append_units.data.frame.Rd | 6 man/append_units.default.Rd | 10 man/as.character.yam.Rd | 4 man/as.character.yamlet.Rd | 4 man/as.data.frame.dvec.Rd | 2 man/as.integer.classified.Rd | 6 man/as_decorated.Rd | 10 man/as_decorated.default.Rd | 10 man/as_dvec.character.Rd | 2 man/as_dvec.complex.Rd | 2 man/as_dvec.dvec.Rd | 2 man/as_dvec.integer.Rd | 2 man/as_dvec.logical.Rd | 2 man/as_dvec.numeric.Rd | 2 man/as_unit_string.character.Rd | 4 man/as_unit_string.factor.Rd | 4 man/as_unit_string.symbolic_units.Rd | 4 man/as_unit_string.units.Rd | 4 man/as_yam.character.Rd | 4 man/as_yam.yamlet.Rd | 4 man/as_yamlet.Rd | 2 man/as_yamlet.character.Rd | 4 man/as_yamlet.data.frame.Rd | 4 man/as_yamlet.list.Rd | 4 man/as_yamlet.yam.Rd | 2 man/as_yamlet.yamlet.Rd | 2 man/c.classified.Rd | 19 man/c.dvec.Rd | 2 man/canonical.decorated.Rd | 4 man/canonical.yamlet.Rd | 4 man/classified.Rd | 4 man/classified.classified.Rd | 6 man/classified.data.frame.Rd | 6 man/classified.default.Rd | 6 man/classified.dvec.Rd | 8 man/classified.factor.Rd | 6 man/decorate.Rd | 10 man/decorate.character.Rd | 12 man/decorate.data.frame.Rd | 12 man/decorate.list.Rd | 12 man/decorate_groups.Rd | 10 man/decorate_groups.data.frame.Rd | 10 man/decorations.Rd | 10 man/decorations.data.frame.Rd | 12 man/decorations_groups.Rd | 10 man/decorations_groups.data.frame.Rd | 10 man/desolve.Rd | 4 man/desolve.classified.Rd | 12 man/desolve.data.frame.Rd | 6 man/desolve.decorated.Rd | 6 man/desolve.dvec.Rd | 8 man/drop_title.Rd | 4 man/drop_title.decorated.Rd | 6 man/drop_title.default.Rd | 6 man/drop_title.dvec.Rd | 6 man/explicit_guide.Rd | 2 man/explicit_guide.data.frame.Rd | 6 man/explicit_guide.dvec.Rd | 4 man/explicit_guide.yamlet.Rd | 4 man/filter.decorated.Rd | 2 man/format.dvec.Rd | 2 man/ggready.data.frame.Rd | 4 man/ggready.decorated.Rd | 4 man/group_by_decorations.Rd | 10 man/group_by_decorations.data.frame.Rd | 10 man/implicit_guide.Rd | 2 man/implicit_guide.data.frame.Rd | 4 man/implicit_guide.dvec.Rd | 6 man/infer_guide.Rd | 6 man/io_csv.Rd | 8 man/io_csv.character.Rd | 10 man/io_csv.data.frame.Rd | 12 man/io_res.Rd | 8 man/io_res.character.Rd | 10 man/io_res.decorated.Rd | 10 man/io_table.Rd | 8 man/io_table.character.Rd | 10 man/io_table.data.frame.Rd | 10 man/io_yamlet.Rd | 6 man/io_yamlet.character.Rd | 10 man/io_yamlet.data.frame.Rd | 10 man/io_yamlet.yamlet.Rd | 10 man/isConditional.default.Rd | 4 man/isConditional.list.Rd | 4 man/isLevels.character.Rd | 4 man/isLevels.default.Rd | 4 man/length.dvec.Rd | 2 man/make_title.Rd | 4 man/make_title.decorated.Rd | 6 man/make_title.default.Rd | 6 man/make_title.dvec.Rd | 6 man/mimic.classified.Rd | 4 man/mimic.default.Rd | 4 man/modify.Rd | 4 man/modify.default.Rd | 4 man/named.Rd | 6 man/parsimonious.default.Rd | 4 man/parsimonious.list.Rd | 4 man/print.dvec.Rd | 2 man/print.yamlet.Rd | 4 man/promote.data.frame.Rd | 2 man/promote.list.Rd | 2 man/reconcile.list.Rd | 16 man/redecorate.Rd | 14 man/resolve.Rd | 2 man/resolve.classified.Rd | 8 man/resolve.data.frame.Rd | 6 man/resolve.decorated.Rd | 6 man/resolve.dvec.Rd | 8 man/selected.Rd | 2 man/selected.default.Rd | 2 man/singularity.Rd | 4 man/sub-.classified.Rd | 6 man/sub-.decorated.Rd | 2 man/sub-.dvec.Rd | 2 man/sub-.unit_string.Rd | 4 man/sub-.yamlet.Rd | 4 man/sub-sub-.classified.Rd | 6 man/sub-sub-.dvec.Rd | 2 man/sub-sub-.unit_string.Rd | 4 man/sub-subset-.classified.Rd | 6 man/sub-subset-.dvec.Rd | 2 man/sub_units.Rd | 10 man/subset-.classified.Rd | 6 man/subset-.dvec.Rd | 2 man/to_yamlet.NULL.Rd | 4 man/to_yamlet.character.Rd | 4 man/to_yamlet.default.Rd | 4 man/to_yamlet.list.Rd | 4 man/to_yamlet.numeric.Rd | 4 man/to_yamlet.yamlet.Rd | 4 man/unclassified.Rd | 2 man/unclassified.classified.Rd | 6 man/unclassified.data.frame.Rd | 6 man/unclassified.dvec.Rd | 2 man/unnest.default.Rd | 4 man/unnest.list.Rd | 4 man/vec_cast.character.dvec.Rd | 6 man/vec_cast.classified.classified.Rd |only man/vec_cast.classified.factor.Rd |only man/vec_cast.complex.dvec.Rd | 6 man/vec_cast.double.dvec.Rd | 6 man/vec_cast.dvec.character.Rd | 6 man/vec_cast.dvec.complex.Rd | 6 man/vec_cast.dvec.double.Rd | 6 man/vec_cast.dvec.dvec.Rd | 6 man/vec_cast.dvec.integer.Rd | 6 man/vec_cast.dvec.logical.Rd | 6 man/vec_cast.factor.classified.Rd |only man/vec_cast.integer.dvec.Rd | 6 man/vec_cast.logical.dvec.Rd | 6 man/vec_ptype2.character.dvec.Rd | 6 man/vec_ptype2.classified.classified.Rd |only man/vec_ptype2.classified.factor.Rd |only man/vec_ptype2.complex.dvec.Rd | 6 man/vec_ptype2.double.dvec.Rd | 6 man/vec_ptype2.dvec.character.Rd | 6 man/vec_ptype2.dvec.complex.Rd | 6 man/vec_ptype2.dvec.double.Rd | 13 man/vec_ptype2.dvec.dvec.Rd | 16 man/vec_ptype2.dvec.integer.Rd | 6 man/vec_ptype2.dvec.logical.Rd | 6 man/vec_ptype2.factor.classified.Rd |only man/vec_ptype2.integer.dvec.Rd | 6 man/vec_ptype2.logical.dvec.Rd | 6 man/yamlet.Rd | 6 man/yamlet_options.Rd | 3 tests/testthat/122.rds |only tests/testthat/123.rds |only tests/testthat/124.rds |only tests/testthat/125.rds |only tests/testthat/126.rds |only tests/testthat/127.rds |only tests/testthat/128.rds |only tests/testthat/129.rds |only tests/testthat/130.rds |only tests/testthat/131.rds |only tests/testthat/132.rds |only tests/testthat/133.rds |only tests/testthat/test-classified.R |only tests/testthat/test-dvec.R | 42 + vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-4-1.pdf |binary vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-5-1.pdf |binary 200 files changed, 817 insertions(+), 607 deletions(-)
Title: Star Trek Fonts Collection
Description: Provides a collection of true type and open type Star Trek-themed fonts.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between trekfont versions 0.9.5 dated 2021-06-01 and 0.9.6 dated 2024-09-11
DESCRIPTION | 20 ++++++++++---------- MD5 | 11 ++++++----- NEWS.md | 4 ++++ R/trekfont.R | 3 +++ README.md | 36 +++++++++++------------------------- inst/WORDLIST | 7 ++----- man/trekfont.Rd |only 7 files changed, 36 insertions(+), 45 deletions(-)
Title: Create Geographic and Non-Geographic Map Tiles
Description: Creates geographic map tiles from geospatial map files or
non-geographic map tiles from simple image files. This package provides a
tile generator function for creating map tile sets for use with packages
such as 'leaflet'. In addition to generating map tiles based on a common
raster layer source, it also handles the non-geographic edge case, producing
map tiles from arbitrary images. These map tiles, which have a
non-geographic, simple coordinate reference system (CRS), can also be used
with 'leaflet' when applying the simple CRS option. Map tiles can be created
from an input file with any of the following extensions: tif, grd and nc for
spatial maps and png, jpg and bmp for basic images. This package requires
'Python' and the 'gdal' library for 'Python'. 'Windows' users are
recommended to install 'OSGeo4W' (<https://trac.osgeo.org/osgeo4w/>) as an
easy way to obtain the required 'gdal' support for 'Python'.
Author: Matthew Leonawicz [aut, cre] ,
Alex M Chubaty [ctb]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between tiler versions 0.3.1 dated 2023-09-09 and 0.3.2 dated 2024-09-11
DESCRIPTION | 12 ++++++------ MD5 | 23 ++++++++++++----------- NEWS.md | 4 ++++ R/options.R | 2 +- R/tiler.R | 10 +++++----- README.md | 7 +++++-- build/vignette.rds |binary inst/doc/tiler-intro.Rmd | 43 ++++++++++++++++++++----------------------- inst/doc/tiler-intro.html | 13 +++++-------- man/tiler-details.Rd |only man/tiler.Rd | 41 ++++++++++++++++++++++------------------- man/tiler_options.Rd | 2 +- vignettes/tiler-intro.Rmd | 43 ++++++++++++++++++++----------------------- 13 files changed, 101 insertions(+), 99 deletions(-)
Title: Music Notation Syntax, Manipulation, Analysis and Transcription
in R
Description: Provides a music notation syntax and a collection of music
programming functions for generating, manipulating, organizing, and analyzing
musical information in R. Music syntax can be entered directly in character
strings, for example to quickly transcribe short pieces of music. The
package contains functions for directly performing various mathematical,
logical and organizational operations and musical transformations on special
object classes that facilitate working with music data and notation. The
same music data can be organized in tidy data frames for a familiar and
powerful approach to the analysis of large amounts of structured music data.
Functions are available for mapping seamlessly between these formats and
their representations of musical information. The package also provides an
API to 'LilyPond' (<https://lilypond.org/>) for transcribing musical
representations in R into tablature ("tabs") and sheet music. 'LilyPond' is
open source music engraving software for gener [...truncated...]
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between tabr versions 0.5.0 dated 2024-06-29 and 0.5.1 dated 2024-09-11
DESCRIPTION | 12 +++++----- MD5 | 13 ++++++----- NEWS.md | 4 +++ R/tabr.R | 9 ++++---- README.md | 8 +++---- build/vignette.rds |binary man/tabr-details.Rd |only man/tabr.Rd | 57 ++++++++++++---------------------------------------- 8 files changed, 40 insertions(+), 63 deletions(-)
Title: 'Amazon Web Services' Storage Services
Description: Interface to 'Amazon Web Services' storage services,
including 'Simple Storage Service' ('S3') and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.storage versions 0.6.0 dated 2024-05-10 and 0.7.0 dated 2024-09-11
paws.storage-0.6.0/paws.storage/R/backupstorage_interfaces.R |only paws.storage-0.6.0/paws.storage/R/backupstorage_operations.R |only paws.storage-0.6.0/paws.storage/R/backupstorage_service.R |only paws.storage-0.6.0/paws.storage/man/backupstorage.Rd |only paws.storage-0.6.0/paws.storage/man/backupstorage_delete_object.Rd |only paws.storage-0.6.0/paws.storage/man/backupstorage_get_chunk.Rd |only paws.storage-0.6.0/paws.storage/man/backupstorage_get_object_metadata.Rd |only paws.storage-0.6.0/paws.storage/man/backupstorage_list_chunks.Rd |only paws.storage-0.6.0/paws.storage/man/backupstorage_list_objects.Rd |only paws.storage-0.6.0/paws.storage/man/backupstorage_notify_object_complete.Rd |only paws.storage-0.6.0/paws.storage/man/backupstorage_put_chunk.Rd |only paws.storage-0.6.0/paws.storage/man/backupstorage_put_object.Rd |only paws.storage-0.6.0/paws.storage/man/backupstorage_start_object.Rd |only paws.storage-0.6.0/paws.storage/tests/testthat/test_backupstorage.R |only paws.storage-0.7.0/paws.storage/DESCRIPTION | 24 paws.storage-0.7.0/paws.storage/MD5 | 228 +-- paws.storage-0.7.0/paws.storage/NAMESPACE | 1 paws.storage-0.7.0/paws.storage/R/backup_interfaces.R | 4 paws.storage-0.7.0/paws.storage/R/backup_operations.R | 751 +++++----- paws.storage-0.7.0/paws.storage/R/backup_service.R | 28 paws.storage-0.7.0/paws.storage/R/dlm_operations.R | 24 paws.storage-0.7.0/paws.storage/R/dlm_service.R | 4 paws.storage-0.7.0/paws.storage/R/ebs_operations.R | 18 paws.storage-0.7.0/paws.storage/R/ebs_service.R | 4 paws.storage-0.7.0/paws.storage/R/efs_operations.R | 93 - paws.storage-0.7.0/paws.storage/R/efs_service.R | 4 paws.storage-0.7.0/paws.storage/R/finspacedata_operations.R | 93 - paws.storage-0.7.0/paws.storage/R/finspacedata_service.R | 4 paws.storage-0.7.0/paws.storage/R/fsx_interfaces.R | 42 paws.storage-0.7.0/paws.storage/R/fsx_operations.R | 180 +- paws.storage-0.7.0/paws.storage/R/fsx_service.R | 4 paws.storage-0.7.0/paws.storage/R/glacier_operations.R | 99 - paws.storage-0.7.0/paws.storage/R/glacier_service.R | 4 paws.storage-0.7.0/paws.storage/R/omics_interfaces.R | 8 paws.storage-0.7.0/paws.storage/R/omics_operations.R | 264 ++- paws.storage-0.7.0/paws.storage/R/omics_service.R | 8 paws.storage-0.7.0/paws.storage/R/recyclebin_operations.R | 36 paws.storage-0.7.0/paws.storage/R/recyclebin_service.R | 6 paws.storage-0.7.0/paws.storage/R/s3_custom.R | 4 paws.storage-0.7.0/paws.storage/R/s3_interfaces.R | 12 paws.storage-0.7.0/paws.storage/R/s3_operations.R | 403 +++-- paws.storage-0.7.0/paws.storage/R/s3_service.R | 4 paws.storage-0.7.0/paws.storage/R/s3control_operations.R | 276 ++- paws.storage-0.7.0/paws.storage/R/s3control_service.R | 4 paws.storage-0.7.0/paws.storage/R/s3outposts_operations.R | 15 paws.storage-0.7.0/paws.storage/R/s3outposts_service.R | 4 paws.storage-0.7.0/paws.storage/R/storagegateway_interfaces.R | 4 paws.storage-0.7.0/paws.storage/R/storagegateway_operations.R | 359 +++- paws.storage-0.7.0/paws.storage/R/storagegateway_service.R | 12 paws.storage-0.7.0/paws.storage/man/backup.Rd | 24 paws.storage-0.7.0/paws.storage/man/backup_cancel_legal_hold.Rd | 12 paws.storage-0.7.0/paws.storage/man/backup_create_backup_plan.Rd | 8 paws.storage-0.7.0/paws.storage/man/backup_create_backup_selection.Rd | 6 paws.storage-0.7.0/paws.storage/man/backup_create_backup_vault.Rd | 3 paws.storage-0.7.0/paws.storage/man/backup_create_framework.Rd | 7 paws.storage-0.7.0/paws.storage/man/backup_create_legal_hold.Rd | 12 paws.storage-0.7.0/paws.storage/man/backup_create_logically_air_gapped_backup_vault.Rd | 35 paws.storage-0.7.0/paws.storage/man/backup_create_report_plan.Rd | 3 paws.storage-0.7.0/paws.storage/man/backup_create_restore_testing_plan.Rd | 11 paws.storage-0.7.0/paws.storage/man/backup_delete_backup_vault.Rd | 3 paws.storage-0.7.0/paws.storage/man/backup_delete_backup_vault_notifications.Rd | 3 paws.storage-0.7.0/paws.storage/man/backup_delete_recovery_point.Rd | 3 paws.storage-0.7.0/paws.storage/man/backup_describe_backup_vault.Rd | 5 paws.storage-0.7.0/paws.storage/man/backup_describe_recovery_point.Rd | 5 paws.storage-0.7.0/paws.storage/man/backup_disassociate_recovery_point_from_parent.Rd | 13 paws.storage-0.7.0/paws.storage/man/backup_get_backup_vault_access_policy.Rd | 3 paws.storage-0.7.0/paws.storage/man/backup_get_backup_vault_notifications.Rd | 3 paws.storage-0.7.0/paws.storage/man/backup_get_legal_hold.Rd | 4 paws.storage-0.7.0/paws.storage/man/backup_get_recovery_point_restore_metadata.Rd | 5 paws.storage-0.7.0/paws.storage/man/backup_get_restore_testing_inferred_metadata.Rd | 2 paws.storage-0.7.0/paws.storage/man/backup_list_backup_job_summaries.Rd | 12 paws.storage-0.7.0/paws.storage/man/backup_list_backup_jobs.Rd | 12 paws.storage-0.7.0/paws.storage/man/backup_list_backup_plan_templates.Rd | 7 paws.storage-0.7.0/paws.storage/man/backup_list_backup_plans.Rd | 4 paws.storage-0.7.0/paws.storage/man/backup_list_copy_job_summaries.Rd | 8 paws.storage-0.7.0/paws.storage/man/backup_list_copy_jobs.Rd | 11 paws.storage-0.7.0/paws.storage/man/backup_list_protected_resources_by_backup_vault.Rd | 8 paws.storage-0.7.0/paws.storage/man/backup_list_recovery_points_by_backup_vault.Rd | 12 paws.storage-0.7.0/paws.storage/man/backup_list_recovery_points_by_legal_hold.Rd | 8 paws.storage-0.7.0/paws.storage/man/backup_list_recovery_points_by_resource.Rd | 6 paws.storage-0.7.0/paws.storage/man/backup_list_restore_job_summaries.Rd | 10 paws.storage-0.7.0/paws.storage/man/backup_list_restore_jobs.Rd | 9 paws.storage-0.7.0/paws.storage/man/backup_list_tags.Rd | 6 paws.storage-0.7.0/paws.storage/man/backup_put_backup_vault_access_policy.Rd | 3 paws.storage-0.7.0/paws.storage/man/backup_put_backup_vault_lock_configuration.Rd | 6 paws.storage-0.7.0/paws.storage/man/backup_put_backup_vault_notifications.Rd | 11 paws.storage-0.7.0/paws.storage/man/backup_put_restore_validation_result.Rd | 2 paws.storage-0.7.0/paws.storage/man/backup_start_backup_job.Rd | 14 paws.storage-0.7.0/paws.storage/man/backup_start_copy_job.Rd | 5 paws.storage-0.7.0/paws.storage/man/backup_start_restore_job.Rd | 71 paws.storage-0.7.0/paws.storage/man/backup_tag_resource.Rd | 9 paws.storage-0.7.0/paws.storage/man/backup_untag_resource.Rd | 12 paws.storage-0.7.0/paws.storage/man/backup_update_backup_plan.Rd | 11 paws.storage-0.7.0/paws.storage/man/backup_update_framework.Rd | 9 paws.storage-0.7.0/paws.storage/man/backup_update_recovery_point_lifecycle.Rd | 3 paws.storage-0.7.0/paws.storage/man/backup_update_report_plan.Rd | 14 paws.storage-0.7.0/paws.storage/man/backup_update_restore_testing_plan.Rd | 2 paws.storage-0.7.0/paws.storage/man/backup_update_restore_testing_selection.Rd | 9 paws.storage-0.7.0/paws.storage/man/fsx_associate_file_system_aliases.Rd | 2 paws.storage-0.7.0/paws.storage/man/fsx_create_file_system.Rd | 34 paws.storage-0.7.0/paws.storage/man/fsx_update_file_system.Rd | 2 paws.storage-0.7.0/paws.storage/man/omics.Rd | 2 paws.storage-0.7.0/paws.storage/man/omics_create_run_group.Rd | 16 paws.storage-0.7.0/paws.storage/man/omics_create_workflow.Rd | 2 paws.storage-0.7.0/paws.storage/man/recyclebin.Rd | 2 paws.storage-0.7.0/paws.storage/man/recyclebin_create_rule.Rd | 2 paws.storage-0.7.0/paws.storage/man/recyclebin_delete_rule.Rd | 2 paws.storage-0.7.0/paws.storage/man/recyclebin_update_rule.Rd | 2 paws.storage-0.7.0/paws.storage/man/s3_complete_multipart_upload.Rd | 16 paws.storage-0.7.0/paws.storage/man/s3_get_object.Rd | 8 paws.storage-0.7.0/paws.storage/man/s3_head_object.Rd | 27 paws.storage-0.7.0/paws.storage/man/s3_list_buckets.Rd | 16 paws.storage-0.7.0/paws.storage/man/s3_list_directory_buckets.Rd | 6 paws.storage-0.7.0/paws.storage/man/s3_list_objects_v2.Rd | 17 paws.storage-0.7.0/paws.storage/man/s3_put_object.Rd | 14 paws.storage-0.7.0/paws.storage/man/storagegateway.Rd | 8 paws.storage-0.7.0/paws.storage/man/storagegateway_activate_gateway.Rd | 12 paws.storage-0.7.0/paws.storage/man/storagegateway_describe_maintenance_start_time.Rd | 7 paws.storage-0.7.0/paws.storage/man/storagegateway_refresh_cache.Rd | 5 paws.storage-0.7.0/paws.storage/man/storagegateway_update_gateway_information.Rd | 11 paws.storage-0.7.0/paws.storage/man/storagegateway_update_maintenance_start_time.Rd | 33 paws.storage-0.7.0/paws.storage/man/storagegateway_update_smb_security_strategy.Rd | 28 122 files changed, 2259 insertions(+), 1507 deletions(-)
Title: 'Amazon Web Services' Developer Tools Services
Description: Interface to 'Amazon Web Services' developer tools services,
including version control, continuous integration and deployment, and
more <https://aws.amazon.com/products/developer-tools/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.developer.tools versions 0.6.0 dated 2024-05-10 and 0.7.0 dated 2024-09-11
paws.developer.tools-0.6.0/paws.developer.tools/R/codestar_interfaces.R |only paws.developer.tools-0.6.0/paws.developer.tools/R/codestar_operations.R |only paws.developer.tools-0.6.0/paws.developer.tools/R/codestar_service.R |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_associate_team_member.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_create_project.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_create_user_profile.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_delete_project.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_delete_user_profile.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_describe_project.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_describe_user_profile.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_disassociate_team_member.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_list_projects.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_list_resources.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_list_tags_for_project.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_list_team_members.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_list_user_profiles.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_tag_project.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_untag_project.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_update_project.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_update_team_member.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/man/codestar_update_user_profile.Rd |only paws.developer.tools-0.6.0/paws.developer.tools/tests/testthat/test_codestar.R |only paws.developer.tools-0.7.0/paws.developer.tools/DESCRIPTION | 13 paws.developer.tools-0.7.0/paws.developer.tools/MD5 | 198 +++---- paws.developer.tools-0.7.0/paws.developer.tools/NAMESPACE | 1 paws.developer.tools-0.7.0/paws.developer.tools/R/cloud9_operations.R | 39 + paws.developer.tools-0.7.0/paws.developer.tools/R/cloud9_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/cloudcontrolapi_operations.R | 24 paws.developer.tools-0.7.0/paws.developer.tools/R/cloudcontrolapi_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/codeartifact_operations.R | 190 ++++--- paws.developer.tools-0.7.0/paws.developer.tools/R/codeartifact_service.R | 14 paws.developer.tools-0.7.0/paws.developer.tools/R/codebuild_interfaces.R | 22 paws.developer.tools-0.7.0/paws.developer.tools/R/codebuild_operations.R | 258 +++++++--- paws.developer.tools-0.7.0/paws.developer.tools/R/codebuild_service.R | 6 paws.developer.tools-0.7.0/paws.developer.tools/R/codecatalyst_operations.R | 114 ++-- paws.developer.tools-0.7.0/paws.developer.tools/R/codecatalyst_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/codecommit_operations.R | 243 ++++++--- paws.developer.tools-0.7.0/paws.developer.tools/R/codecommit_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/codedeploy_operations.R | 141 +++-- paws.developer.tools-0.7.0/paws.developer.tools/R/codedeploy_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/codeguruprofiler_operations.R | 69 +- paws.developer.tools-0.7.0/paws.developer.tools/R/codeguruprofiler_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/codegurureviewer_operations.R | 42 + paws.developer.tools-0.7.0/paws.developer.tools/R/codegurureviewer_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/codegurusecurity_interfaces.R | 6 paws.developer.tools-0.7.0/paws.developer.tools/R/codegurusecurity_operations.R | 100 ++- paws.developer.tools-0.7.0/paws.developer.tools/R/codegurusecurity_service.R | 18 paws.developer.tools-0.7.0/paws.developer.tools/R/codepipeline_interfaces.R | 46 + paws.developer.tools-0.7.0/paws.developer.tools/R/codepipeline_operations.R | 229 +++++++- paws.developer.tools-0.7.0/paws.developer.tools/R/codepipeline_service.R | 7 paws.developer.tools-0.7.0/paws.developer.tools/R/codestarconnections_operations.R | 81 ++- paws.developer.tools-0.7.0/paws.developer.tools/R/codestarconnections_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/codestarnotifications_operations.R | 39 + paws.developer.tools-0.7.0/paws.developer.tools/R/codestarnotifications_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/devopsguru_operations.R | 93 ++- paws.developer.tools-0.7.0/paws.developer.tools/R/devopsguru_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/drs_operations.R | 150 +++-- paws.developer.tools-0.7.0/paws.developer.tools/R/drs_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/fis_interfaces.R | 8 paws.developer.tools-0.7.0/paws.developer.tools/R/fis_operations.R | 72 +- paws.developer.tools-0.7.0/paws.developer.tools/R/fis_service.R | 12 paws.developer.tools-0.7.0/paws.developer.tools/R/wellarchitected_operations.R | 216 +++++--- paws.developer.tools-0.7.0/paws.developer.tools/R/wellarchitected_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/R/xray_operations.R | 90 ++- paws.developer.tools-0.7.0/paws.developer.tools/R/xray_service.R | 4 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact.Rd | 9 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_associate_external_connection.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_copy_package_versions.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_delete_package.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_delete_package_versions.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_describe_package.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_describe_package_version.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_dispose_package_versions.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_get_associated_package_group.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_get_package_version_asset.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_get_package_version_readme.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_list_package_version_assets.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_list_package_version_dependencies.Rd | 11 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_list_package_versions.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_list_packages.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_put_package_origin_configuration.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codeartifact_update_package_versions_status.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codebuild.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codebuild_create_fleet.Rd | 24 paws.developer.tools-0.7.0/paws.developer.tools/man/codebuild_create_project.Rd | 8 paws.developer.tools-0.7.0/paws.developer.tools/man/codebuild_create_webhook.Rd | 16 paws.developer.tools-0.7.0/paws.developer.tools/man/codebuild_import_source_credentials.Rd | 15 paws.developer.tools-0.7.0/paws.developer.tools/man/codebuild_start_build.Rd | 8 paws.developer.tools-0.7.0/paws.developer.tools/man/codebuild_update_fleet.Rd | 24 paws.developer.tools-0.7.0/paws.developer.tools/man/codebuild_update_project.Rd | 7 paws.developer.tools-0.7.0/paws.developer.tools/man/codecommit_create_repository.Rd | 3 paws.developer.tools-0.7.0/paws.developer.tools/man/codecommit_update_repository_encryption_key.Rd | 3 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity.Rd | 14 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_batch_get_findings.Rd | 4 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_create_scan.Rd | 8 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_create_upload_url.Rd | 6 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_get_account_configuration.Rd | 4 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_get_findings.Rd | 2 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_get_metrics_summary.Rd | 8 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_list_findings_metrics.Rd | 8 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_list_scans.Rd | 6 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_list_tags_for_resource.Rd | 3 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_tag_resource.Rd | 3 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_untag_resource.Rd | 3 paws.developer.tools-0.7.0/paws.developer.tools/man/codegurusecurity_update_account_configuration.Rd | 10 paws.developer.tools-0.7.0/paws.developer.tools/man/codepipeline.Rd | 3 paws.developer.tools-0.7.0/paws.developer.tools/man/codepipeline_list_action_executions.Rd | 5 paws.developer.tools-0.7.0/paws.developer.tools/man/codepipeline_list_rule_executions.Rd |only paws.developer.tools-0.7.0/paws.developer.tools/man/codepipeline_list_rule_types.Rd |only paws.developer.tools-0.7.0/paws.developer.tools/man/codepipeline_override_stage_condition.Rd |only paws.developer.tools-0.7.0/paws.developer.tools/man/fis.Rd | 6 paws.developer.tools-0.7.0/paws.developer.tools/tests/testthat/test_codepipeline.R | 4 113 files changed, 1872 insertions(+), 978 deletions(-)
More information about paws.developer.tools at CRAN
Permanent link
Title: Sound Synthesis and Acoustic Analysis
Description: Performs parametric synthesis of sounds with harmonic and noise
components such as animal vocalizations or human voice. Also offers tools
for audio manipulation and acoustic analysis, including pitch tracking,
spectral analysis, audio segmentation, pitch and formant shifting, etc.
Includes four interactive web apps for synthesizing and annotating audio,
manually correcting pitch contours, and measuring formant frequencies.
Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <andrey.anikin@cogsci.se>
Diff between soundgen versions 2.6.3 dated 2024-05-28 and 2.7.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 99 ++--- NAMESPACE | 1 NEWS | 15 R/analyze.R | 12 R/audSpec.R | 480 +++++++++++++++---------- R/invertModulSpec.R | 238 +++--------- R/invertSpectrogram.R | 49 +- R/math.R | 56 ++- R/modulationSpectrum.R | 704 +++++++++++++++----------------------- R/modulationSpectrum_utilities.R |only R/soundgen.R | 2 R/spectrogram.R | 12 R/surprisal.R | 55 +- inst/shiny/formant_app/server.R | 2 man/analyze.Rd | 8 man/audSpectrogram.Rd | 93 +++-- man/averageMatrices.Rd | 2 man/dot-analyze.Rd | 2 man/dot-audSpectrogram.Rd | 54 ++ man/dot-filterSoundByMS.Rd | 15 man/dot-flatSpectrum.Rd | 2 man/dot-getSurprisal.Rd | 29 - man/dot-modulationSpectrum.Rd | 77 ++-- man/dot-phasegram.Rd | 4 man/dot-shiftFormants.Rd | 2 man/dot-shiftPitch.Rd | 2 man/dot-spectrogram.Rd | 6 man/filterSoundByMS.Rd | 28 - man/flatSpectrum.Rd | 2 man/getAM.Rd | 2 man/getFormants.Rd | 2 man/getFrameBank.Rd | 2 man/getPitchAutocor.Rd | 2 man/getRough.Rd | 42 +- man/getSurprisal.Rd | 35 - man/guessPhase_GL.Rd | 2 man/invertSpectrogram.Rd | 12 man/jet.col.Rd |only man/logWarpMS.Rd | 2 man/modulationSpectrum.Rd | 183 ++++++--- man/modulationSpectrumFragment.Rd | 36 + man/msToSpec.Rd | 2 man/phasegram.Rd | 4 man/plotMS.Rd | 11 man/plotSpec.Rd | 4 man/shiftFormants.Rd | 2 man/shiftPitch.Rd | 2 man/specToMS.Rd | 4 man/specToMS_1D.Rd |only man/spectrogram.Rd | 6 man/transplantFormants.Rd | 2 52 files changed, 1260 insertions(+), 1158 deletions(-)
Title: Classes and Methods for Simple Feature Objects that Have a Time
Column
Description: Classes and methods for spatial objects that have a registered time
column, in particular for irregular spatiotemporal data. The time column can
be of any type, but needs to be ordinal. Regularly laid out spatiotemporal
data (vector or raster data cubes) are handled by package 'stars'.
Author: Henning Teickner [aut, cre, cph]
,
Edzer Pebesma [aut, cph] ,
Benedikt Graeler [aut, cph]
Maintainer: Henning Teickner <henning.teickner@uni-muenster.de>
Diff between sftime versions 0.2-0 dated 2022-03-17 and 0.3.0 dated 2024-09-11
sftime-0.2-0/sftime/tests |only sftime-0.3.0/sftime/DESCRIPTION | 17 sftime-0.3.0/sftime/MD5 | 40 - sftime-0.3.0/sftime/NAMESPACE | 6 sftime-0.3.0/sftime/NEWS.md | 22 sftime-0.3.0/sftime/R/bind.R | 13 sftime-0.3.0/sftime/R/init.R | 2 sftime-0.3.0/sftime/R/sftime.R | 208 +++++ sftime-0.3.0/sftime/R/st_time.R | 12 sftime-0.3.0/sftime/R/tidyverse.R | 42 + sftime-0.3.0/sftime/build/vignette.rds |binary sftime-0.3.0/sftime/inst/doc/sftime.R | 15 sftime-0.3.0/sftime/inst/doc/sftime.Rmd | 19 sftime-0.3.0/sftime/inst/doc/sftime.html | 1094 +++++++++++++++------------- sftime-0.3.0/sftime/man/bind.Rd | 13 sftime-0.3.0/sftime/man/st_as_sftime.Rd | 133 +++ sftime-0.3.0/sftime/man/st_sftime.Rd | 3 sftime-0.3.0/sftime/man/st_time.Rd | 3 sftime-0.3.0/sftime/man/tidyverse.Rd | 193 +--- sftime-0.3.0/sftime/man/transform.sftime.Rd | 2 sftime-0.3.0/sftime/vignettes/sftime.Rmd | 19 21 files changed, 1184 insertions(+), 672 deletions(-)
Title: Data Analysis Relating to Star Trek
Description: Provides datasets related to the Star Trek fictional universe and functions for working with the data.
The package also provides access to real world datasets based on the televised series and other related licensed media productions.
It interfaces with the Star Trek API (STAPI) (<http://stapi.co/>),
Memory Alpha (<https://memory-alpha.fandom.com/wiki/Portal:Main>), and Memory Beta (<https://memory-beta.fandom.com/wiki/Main_Page>)
to retrieve data, metadata and other information relating to Star Trek.
It also contains several local datasets covering a variety of topics.
The package also provides functions for working with data from other Star Trek-related
R data packages containing larger datasets not stored in 'rtrek'.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between rtrek versions 0.5.0 dated 2024-06-29 and 0.5.1 dated 2024-09-11
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 4 ++++ README.md | 13 ++++++++----- 4 files changed, 20 insertions(+), 13 deletions(-)
Title: Restricted Statistical Estimation and Inference for Linear
Models
Description: Allow for easy-to-use testing or evaluating of linear equality and inequality restrictions about parameters and effects in (generalized) linear statistical models.
Author: Leonard Vanbrabant [aut, cre],
Rebecca Kuiper [aut],
Yves Rosseel [ctb],
Aleksandra Dacko [ctb]
Maintainer: Leonard Vanbrabant <info@restriktor.org>
Diff between restriktor versions 0.5-80 dated 2024-07-06 and 0.5-90 dated 2024-09-11
restriktor-0.5-80/restriktor/R/get_results_benchmark.R |only restriktor-0.5-80/restriktor/man/ConTestC.Rd |only restriktor-0.5-80/restriktor/man/ConTestLRT.Rd |only restriktor-0.5-80/restriktor/man/ConTestScore.Rd |only restriktor-0.5-80/restriktor/man/ConTestWald.Rd |only restriktor-0.5-90/restriktor/DESCRIPTION | 11 restriktor-0.5-90/restriktor/MD5 | 175 restriktor-0.5-90/restriktor/NAMESPACE | 353 restriktor-0.5-90/restriktor/R/Gaussian_Elimination.R | 114 restriktor-0.5-90/restriktor/R/compute_chiBarSquare_weights.R | 451 - restriktor-0.5-90/restriktor/R/conGLM.R | 752 +- restriktor-0.5-90/restriktor/R/conGLM_fit.R | 490 - restriktor-0.5-90/restriktor/R/conLM.R | 752 +- restriktor-0.5-90/restriktor/R/conMLM.R | 730 +- restriktor-0.5-90/restriktor/R/conRLM.R | 844 +- restriktor-0.5-90/restriktor/R/conRLM_fit.R | 404 - restriktor-0.5-90/restriktor/R/conRLM_tests_F_Wald_score.R | 302 restriktor-0.5-90/restriktor/R/conTest.R | 8 restriktor-0.5-90/restriktor/R/conTestD.R | 164 restriktor-0.5-90/restriktor/R/conTestLavaan_plot.R | 368 - restriktor-0.5-90/restriktor/R/conTest_ceq_conGLM_F_Wald_score.R | 316 restriktor-0.5-90/restriktor/R/conTest_ceq_conLM_F_Wald_score.R | 374 - restriktor-0.5-90/restriktor/R/conTest_ceq_conRLM_F_Wald_score.R | 292 restriktor-0.5-90/restriktor/R/conTest_conGLM.R | 1578 ++-- restriktor-0.5-90/restriktor/R/conTest_conLM.R | 1890 ++--- restriktor-0.5-90/restriktor/R/conTest_conMLM.R | 538 - restriktor-0.5-90/restriktor/R/conTest_conRLM.R | 1661 ++-- restriktor-0.5-90/restriktor/R/conTest_summary.R | 70 restriktor-0.5-90/restriktor/R/con_augmented_information.R | 200 restriktor-0.5-90/restriktor/R/con_boot.R | 48 restriktor-0.5-90/restriktor/R/con_boot_data.R | 30 restriktor-0.5-90/restriktor/R/con_boot_fixed.R | 28 restriktor-0.5-90/restriktor/R/con_bootstrapD.R | 780 +- restriktor-0.5-90/restriktor/R/con_constraints.R | 480 - restriktor-0.5-90/restriktor/R/con_constraints_nonlinear_idx.R | 38 restriktor-0.5-90/restriktor/R/con_iht.R | 18 restriktor-0.5-90/restriktor/R/con_incomplete_lm.R | 1346 +-- restriktor-0.5-90/restriktor/R/con_loglik.R | 84 restriktor-0.5-90/restriktor/R/con_pbar.R | 44 restriktor-0.5-90/restriktor/R/con_pvalue.R | 890 +- restriktor-0.5-90/restriktor/R/con_sandwich.R | 446 - restriktor-0.5-90/restriktor/R/ext_ic_infer.R |only restriktor-0.5-90/restriktor/R/goric.R | 1714 ++-- restriktor-0.5-90/restriktor/R/goric_benchmark.R | 826 +- restriktor-0.5-90/restriktor/R/goric_benchmark_plot.R | 455 - restriktor-0.5-90/restriktor/R/goric_benchmark_print.R | 319 restriktor-0.5-90/restriktor/R/goric_benchmark_utilities.R | 1186 +-- restriktor-0.5-90/restriktor/R/goric_calculate_IC_weights.R | 134 restriktor-0.5-90/restriktor/R/goric_compute_loglik_complement.R | 172 restriktor-0.5-90/restriktor/R/goric_evSyn.R | 2146 ++--- restriktor-0.5-90/restriktor/R/goric_penalty.R | 230 restriktor-0.5-90/restriktor/R/goric_print.R | 470 - restriktor-0.5-90/restriktor/R/goric_summary.R | 496 - restriktor-0.5-90/restriktor/R/goric_utilities.R |only restriktor-0.5-90/restriktor/R/gorica_est.R | 446 - restriktor-0.5-90/restriktor/R/gorica_est_summary.R | 106 restriktor-0.5-90/restriktor/R/is_closed_convex_cone.R | 46 restriktor-0.5-90/restriktor/R/lav_constraints_parse.R | 298 restriktor-0.5-90/restriktor/R/restriktor.R | 84 restriktor-0.5-90/restriktor/R/restriktor_print.R | 148 restriktor-0.5-90/restriktor/R/restriktor_print_summary.R | 244 restriktor-0.5-90/restriktor/R/restriktor_summary.R | 478 - restriktor-0.5-90/restriktor/R/utilities.R | 499 - restriktor-0.5-90/restriktor/R/zzz.R | 22 restriktor-0.5-90/restriktor/README.md | 112 restriktor-0.5-90/restriktor/build/vignette.rds |binary restriktor-0.5-90/restriktor/inst/doc/Guidelines_GORIC-benchmarks.R |only restriktor-0.5-90/restriktor/inst/doc/Guidelines_GORIC-benchmarks.Rmd |only restriktor-0.5-90/restriktor/inst/doc/Guidelines_GORIC-benchmarks.html |only restriktor-0.5-90/restriktor/inst/doc/Guidelines_GORIC_output.R | 1743 ++-- restriktor-0.5-90/restriktor/inst/doc/Guidelines_GORIC_output.Rmd | 2829 +++---- restriktor-0.5-90/restriktor/inst/doc/Guidelines_GORIC_output.html | 3617 +++++----- restriktor-0.5-90/restriktor/man/FacialBurns.Rd | 56 restriktor-0.5-90/restriktor/man/bootstrapD.Rd | 288 restriktor-0.5-90/restriktor/man/calculate_IC_weights.Rd | 116 restriktor-0.5-90/restriktor/man/chi_bar_square_weights.Rd | 220 restriktor-0.5-90/restriktor/man/conTestC.Rd |only restriktor-0.5-90/restriktor/man/conTestF.Rd | 676 - restriktor-0.5-90/restriktor/man/conTestLRT.Rd |only restriktor-0.5-90/restriktor/man/conTestScore.Rd |only restriktor-0.5-90/restriktor/man/conTestWald.Rd |only restriktor-0.5-90/restriktor/man/conTest_ceq.Rd | 328 restriktor-0.5-90/restriktor/man/conTest_methods.Rd | 82 restriktor-0.5-90/restriktor/man/conTest_summary.Rd | 306 restriktor-0.5-90/restriktor/man/evSyn.Rd | 688 - restriktor-0.5-90/restriktor/man/goric.Rd | 681 - restriktor-0.5-90/restriktor/man/goric_benchmark.Rd | 419 - restriktor-0.5-90/restriktor/man/iht.Rd | 896 +- restriktor-0.5-90/restriktor/man/myGORICs.Rd | 34 restriktor-0.5-90/restriktor/man/myLLs.Rd | 34 restriktor-0.5-90/restriktor/man/myPTs.Rd | 34 restriktor-0.5-90/restriktor/man/restriktor-package.rd | 312 restriktor-0.5-90/restriktor/man/restriktor_methods.Rd | 230 restriktor-0.5-90/restriktor/tests |only restriktor-0.5-90/restriktor/vignettes/Guidelines_GORIC-benchmarks.Rmd |only restriktor-0.5-90/restriktor/vignettes/Guidelines_GORIC_output.Rmd | 2829 +++---- 96 files changed, 22265 insertions(+), 21853 deletions(-)
Title: Generating Various Numerical Representation Schemes for Protein
Sequences
Description: Comprehensive toolkit for generating various numerical
features of protein sequences described in Xiao et al. (2015)
<DOI:10.1093/bioinformatics/btv042>. For full functionality,
the software 'ncbi-blast+' is needed, see
<https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html>
for more information.
Author: Nan Xiao [aut, cre] ,
Qing-Song Xu [aut],
Dong-Sheng Cao [aut],
Sebastian Mueller [ctb]
Maintainer: Nan Xiao <me@nanx.me>
Diff between protr versions 1.7-3 dated 2024-08-30 and 1.7-4 dated 2024-09-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 12 +++++++++++- R/par-01-parSeqSim.R | 14 ++++++++++++-- 4 files changed, 29 insertions(+), 9 deletions(-)
Title: 'Amazon Web Services' Security, Identity, & Compliance Services
Description: Interface to 'Amazon Web Services' security, identity, and
compliance services, including the 'Identity & Access Management'
('IAM') service for managing access to services and resources, and
more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.security.identity versions 0.6.1 dated 2024-05-16 and 0.7.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 437 +-- R/accessanalyzer_interfaces.R | 36 R/accessanalyzer_operations.R | 209 + R/accessanalyzer_service.R | 21 R/account_interfaces.R | 36 R/account_operations.R | 219 + R/account_service.R | 11 R/acm_operations.R | 77 R/acm_service.R | 6 R/acmpca_interfaces.R | 22 R/acmpca_operations.R | 127 R/acmpca_service.R | 4 R/clouddirectory_operations.R | 198 - R/clouddirectory_service.R | 4 R/cloudhsm_operations.R | 60 R/cloudhsm_service.R | 4 R/cloudhsmv2_interfaces.R | 56 R/cloudhsmv2_operations.R | 241 + R/cloudhsmv2_service.R | 39 R/cognitoidentity_operations.R | 69 R/cognitoidentity_service.R | 4 R/cognitoidentityprovider_interfaces.R | 14 R/cognitoidentityprovider_operations.R | 1202 ++++---- R/cognitoidentityprovider_service.R | 10 R/cognitosync_operations.R | 51 R/cognitosync_service.R | 9 R/detective_operations.R | 87 R/detective_service.R | 6 R/directoryservice_operations.R | 201 - R/directoryservice_service.R | 4 R/fms_operations.R | 126 R/fms_service.R | 4 R/guardduty_interfaces.R | 58 R/guardduty_operations.R | 379 ++ R/guardduty_service.R | 9 R/iam_operations.R | 491 ++- R/iam_service.R | 4 R/iamrolesanywhere_interfaces.R | 22 R/iamrolesanywhere_operations.R | 102 R/iamrolesanywhere_service.R | 4 R/identitystore_operations.R | 57 R/identitystore_service.R | 4 R/inspector2_interfaces.R | 4 R/inspector2_operations.R | 183 - R/inspector2_service.R | 4 R/inspector_operations.R | 111 R/inspector_service.R | 4 R/kms_interfaces.R | 20 R/kms_operations.R | 1384 +++++----- R/kms_service.R | 5 R/macie2_interfaces.R | 32 R/macie2_operations.R | 391 +- R/macie2_service.R | 18 R/pcaconnectorad_operations.R | 75 R/pcaconnectorad_service.R | 4 R/ram_operations.R | 102 R/ram_service.R | 4 R/secretsmanager_interfaces.R | 2 R/secretsmanager_operations.R | 118 R/secretsmanager_service.R | 4 R/securityhub_interfaces.R | 16 R/securityhub_operations.R | 311 +- R/securityhub_service.R | 32 R/securitylake_operations.R | 95 R/securitylake_service.R | 4 R/shield_operations.R | 115 R/shield_service.R | 4 R/sso_operations.R | 12 R/sso_service.R | 4 R/ssoadmin_operations.R | 219 + R/ssoadmin_service.R | 4 R/ssooidc_interfaces.R | 6 R/ssooidc_operations.R | 46 R/ssooidc_service.R | 4 R/sts_operations.R | 32 R/sts_service.R | 4 R/verifiedpermissions_interfaces.R | 28 R/verifiedpermissions_operations.R | 95 R/verifiedpermissions_service.R | 8 R/waf_operations.R | 231 + R/waf_service.R | 4 R/wafregional_operations.R | 243 + R/wafregional_service.R | 4 R/wafv2_interfaces.R | 14 R/wafv2_operations.R | 222 + R/wafv2_service.R | 6 man/accessanalyzer.Rd | 15 man/accessanalyzer_check_access_not_granted.Rd | 7 man/accessanalyzer_check_no_public_access.Rd |only man/accessanalyzer_generate_finding_recommendation.Rd |only man/accessanalyzer_get_finding_recommendation.Rd |only man/account.Rd | 7 man/account_accept_primary_email_update.Rd |only man/account_disable_region.Rd | 5 man/account_enable_region.Rd | 5 man/account_get_contact_information.Rd | 5 man/account_get_primary_email.Rd |only man/account_get_region_opt_status.Rd | 5 man/account_list_regions.Rd | 5 man/account_put_contact_information.Rd | 5 man/account_start_primary_email_update.Rd |only man/acm.Rd | 2 man/acm_get_certificate.Rd | 4 man/acm_list_certificates.Rd | 2 man/acm_request_certificate.Rd | 24 man/acmpca_get_policy.Rd | 5 man/acmpca_list_certificate_authorities.Rd | 10 man/acmpca_list_permissions.Rd | 24 man/acmpca_list_tags.Rd | 22 man/cloudhsmv2.Rd | 34 man/cloudhsmv2_copy_backup_to_region.Rd | 4 man/cloudhsmv2_create_cluster.Rd | 23 man/cloudhsmv2_create_hsm.Rd | 6 man/cloudhsmv2_delete_backup.Rd | 4 man/cloudhsmv2_delete_cluster.Rd | 4 man/cloudhsmv2_delete_resource_policy.Rd |only man/cloudhsmv2_describe_backups.Rd | 16 man/cloudhsmv2_describe_clusters.Rd | 4 man/cloudhsmv2_get_resource_policy.Rd |only man/cloudhsmv2_initialize_cluster.Rd | 7 man/cloudhsmv2_list_tags.Rd | 4 man/cloudhsmv2_modify_backup_attributes.Rd | 4 man/cloudhsmv2_modify_cluster.Rd | 4 man/cloudhsmv2_put_resource_policy.Rd |only man/cloudhsmv2_restore_backup.Rd | 4 man/cloudhsmv2_tag_resource.Rd | 5 man/cloudhsmv2_untag_resource.Rd | 5 man/cognitoidentityprovider.Rd | 6 man/cognitoidentityprovider_admin_confirm_sign_up.Rd | 8 man/cognitoidentityprovider_admin_create_user.Rd | 2 man/cognitoidentityprovider_admin_initiate_auth.Rd | 2 man/cognitoidentityprovider_admin_reset_user_password.Rd | 2 man/cognitoidentityprovider_admin_respond_to_auth_challenge.Rd | 2 man/cognitoidentityprovider_admin_update_user_attributes.Rd | 2 man/cognitoidentityprovider_confirm_forgot_password.Rd | 2 man/cognitoidentityprovider_confirm_sign_up.Rd | 2 man/cognitoidentityprovider_create_user_pool_client.Rd | 4 man/cognitoidentityprovider_forgot_password.Rd | 2 man/cognitoidentityprovider_get_log_delivery_configuration.Rd | 8 man/cognitoidentityprovider_get_user_attribute_verification_code.Rd | 2 man/cognitoidentityprovider_initiate_auth.Rd | 2 man/cognitoidentityprovider_resend_confirmation_code.Rd | 2 man/cognitoidentityprovider_respond_to_auth_challenge.Rd | 2 man/cognitoidentityprovider_set_log_delivery_configuration.Rd | 11 man/cognitoidentityprovider_sign_up.Rd | 2 man/cognitoidentityprovider_update_user_attributes.Rd | 2 man/cognitoidentityprovider_update_user_pool_client.Rd | 4 man/cognitosync.Rd | 3 man/detective.Rd | 2 man/guardduty.Rd | 5 man/guardduty_create_malware_protection_plan.Rd |only man/guardduty_delete_malware_protection_plan.Rd |only man/guardduty_get_malware_protection_plan.Rd |only man/guardduty_list_malware_protection_plans.Rd |only man/guardduty_update_malware_protection_plan.Rd |only man/iam_create_account_alias.Rd | 2 man/iam_create_role.Rd | 2 man/iam_create_service_linked_role.Rd | 2 man/iam_delete_account_alias.Rd | 2 man/iam_delete_user.Rd | 2 man/iam_list_account_aliases.Rd | 2 man/iam_update_role.Rd | 2 man/iamrolesanywhere_create_profile.Rd | 4 man/iamrolesanywhere_update_profile.Rd | 4 man/inspector2_get_cis_scan_report.Rd | 9 man/kms.Rd | 1 man/kms_create_grant.Rd | 2 man/kms_create_key.Rd | 25 man/kms_decrypt.Rd | 2 man/kms_derive_shared_secret.Rd |only man/kms_encrypt.Rd | 2 man/kms_generate_data_key.Rd | 2 man/kms_generate_data_key_pair.Rd | 9 man/kms_generate_data_key_pair_without_plaintext.Rd | 2 man/kms_generate_data_key_without_plaintext.Rd | 2 man/kms_generate_mac.Rd | 2 man/kms_put_key_policy.Rd | 2 man/kms_re_encrypt.Rd | 2 man/kms_replicate_key.Rd | 2 man/kms_retire_grant.Rd | 2 man/kms_revoke_grant.Rd | 2 man/kms_sign.Rd | 2 man/kms_verify.Rd | 2 man/kms_verify_mac.Rd | 2 man/macie2.Rd | 14 man/macie2_batch_update_automated_discovery_accounts.Rd |only man/macie2_create_classification_job.Rd | 10 man/macie2_get_automated_discovery_configuration.Rd | 4 man/macie2_list_automated_discovery_accounts.Rd |only man/macie2_list_invitations.Rd | 4 man/macie2_list_resource_profile_artifacts.Rd | 6 man/macie2_put_classification_export_configuration.Rd | 4 man/macie2_test_custom_data_identifier.Rd | 4 man/macie2_update_automated_discovery_configuration.Rd | 40 man/macie2_update_organization_configuration.Rd | 4 man/macie2_update_sensitivity_inspection_template.Rd | 5 man/secretsmanager_create_secret.Rd | 12 man/secretsmanager_get_secret_value.Rd | 3 man/secretsmanager_put_secret_value.Rd | 26 man/secretsmanager_rotate_secret.Rd | 2 man/secretsmanager_update_secret.Rd | 14 man/secretsmanager_validate_resource_policy.Rd | 3 man/securityhub.Rd | 28 man/securityhub_create_finding_aggregator.Rd | 29 man/securityhub_start_configuration_policy_association.Rd | 5 man/securityhub_start_configuration_policy_disassociation.Rd | 5 man/securityhub_update_finding_aggregator.Rd | 29 man/securityhub_update_findings.Rd | 4 man/securitylake_create_subscriber.Rd | 2 man/shield_associate_drt_role.Rd | 7 man/ssooidc_create_token.Rd | 7 man/ssooidc_create_token_with_iam.Rd | 9 man/ssooidc_register_client.Rd | 28 man/sts_assume_role.Rd | 4 man/sts_assume_role_with_saml.Rd | 2 man/sts_assume_role_with_web_identity.Rd | 2 man/verifiedpermissions.Rd | 4 man/verifiedpermissions_create_identity_source.Rd | 13 man/verifiedpermissions_list_identity_sources.Rd | 2 man/verifiedpermissions_update_identity_source.Rd | 4 man/wafv2.Rd | 2 man/wafv2_delete_logging_configuration.Rd | 22 man/wafv2_get_logging_configuration.Rd | 18 man/wafv2_list_logging_configurations.Rd | 18 man/wafv2_put_permission_policy.Rd | 4 tests/testthat/test_guardduty.R | 4 tests/testthat/test_macie2.R | 4 228 files changed, 6355 insertions(+), 3473 deletions(-)
More information about paws.security.identity at CRAN
Permanent link
Title: 'Amazon Web Services' Networking & Content Delivery Services
Description: Interface to 'Amazon Web Services' networking and content
delivery services, including 'Route 53' Domain Name System service,
'CloudFront' content delivery, load balancing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.networking versions 0.6.0 dated 2024-05-10 and 0.7.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 216 +++--- R/apigateway_operations.R | 360 ++++++---- R/apigateway_service.R | 4 R/apigatewaymanagementapi_operations.R | 9 R/apigatewaymanagementapi_service.R | 4 R/apigatewayv2_operations.R | 216 ++++-- R/apigatewayv2_service.R | 4 R/appfabric_operations.R | 78 +- R/appfabric_service.R | 4 R/appmesh_operations.R | 114 ++- R/appmesh_service.R | 4 R/arczonalshift_interfaces.R | 24 R/arczonalshift_operations.R | 137 +++ R/arczonalshift_service.R | 67 + R/backupgateway_operations.R | 75 +- R/backupgateway_service.R | 4 R/cloudfront_operations.R | 341 ++++++--- R/cloudfront_service.R | 4 R/directconnect_operations.R | 211 +++-- R/directconnect_service.R | 6 R/elb_operations.R | 87 +- R/elb_service.R | 4 R/elbv2_interfaces.R | 34 R/elbv2_operations.R | 258 +++++-- R/elbv2_service.R | 12 R/globalaccelerator_interfaces.R | 4 R/globalaccelerator_operations.R | 178 +++- R/globalaccelerator_service.R | 4 R/networkfirewall_operations.R | 110 ++- R/networkfirewall_service.R | 4 R/networkmanager_interfaces.R | 56 - R/networkmanager_operations.R | 357 +++++---- R/networkmanager_service.R | 4 R/route53_operations.R | 212 +++-- R/route53_service.R | 4 R/route53domains_operations.R | 102 +- R/route53domains_service.R | 4 R/route53recoverycluster_operations.R | 12 R/route53recoverycluster_service.R | 4 R/route53recoverycontrolconfig_operations.R | 72 +- R/route53recoverycontrolconfig_service.R | 4 R/route53recoveryreadiness_operations.R | 96 +- R/route53recoveryreadiness_service.R | 4 R/route53resolver_operations.R | 216 +++--- R/route53resolver_service.R | 4 R/servicediscovery_operations.R | 81 +- R/servicediscovery_service.R | 4 R/telconetworkbuilder_interfaces.R | 16 R/telconetworkbuilder_operations.R | 144 ++-- R/telconetworkbuilder_service.R | 6 R/vpclattice_operations.R | 204 +++-- R/vpclattice_service.R | 4 man/arczonalshift.Rd | 63 + man/arczonalshift_create_practice_run_configuration.Rd | 6 man/arczonalshift_get_autoshift_observer_notification_status.Rd |only man/arczonalshift_get_managed_resource.Rd | 4 man/arczonalshift_list_autoshifts.Rd | 4 man/arczonalshift_list_zonal_shifts.Rd | 2 man/arczonalshift_start_zonal_shift.Rd | 12 man/arczonalshift_update_autoshift_observer_notification_status.Rd |only man/arczonalshift_update_zonal_autoshift_configuration.Rd | 12 man/cloudfront_list_tags_for_resource.Rd | 2 man/cloudfront_tag_resource.Rd | 2 man/cloudfront_test_function.Rd | 2 man/cloudfront_untag_resource.Rd | 2 man/directconnect.Rd | 2 man/directconnect_allocate_hosted_connection.Rd | 8 man/directconnect_create_interconnect.Rd | 2 man/directconnect_create_lag.Rd | 5 man/directconnect_describe_virtual_gateways.Rd | 5 man/directconnect_update_virtual_interface_attributes.Rd | 2 man/elbv2.Rd | 8 man/elbv2_create_load_balancer.Rd | 18 man/elbv2_delete_shared_trust_store_association.Rd |only man/elbv2_describe_target_health.Rd | 2 man/elbv2_describe_trust_store_revocations.Rd | 6 man/elbv2_describe_trust_stores.Rd | 5 man/elbv2_get_resource_policy.Rd |only man/elbv2_modify_trust_store.Rd | 4 man/elbv2_set_ip_address_type.Rd | 23 man/elbv2_set_subnets.Rd | 7 man/globalaccelerator_update_accelerator.Rd | 3 man/globalaccelerator_update_custom_routing_accelerator.Rd | 3 man/networkfirewall_create_tls_inspection_configuration.Rd | 2 man/networkmanager_create_connect_peer.Rd | 9 man/networkmanager_get_network_resource_counts.Rd | 4 man/networkmanager_get_network_resource_relationships.Rd | 4 man/networkmanager_get_network_resources.Rd | 43 - man/networkmanager_get_network_telemetry.Rd | 24 man/route53_update_health_check.Rd | 2 man/route53resolver_create_firewall_rule.Rd | 6 man/route53resolver_update_firewall_rule.Rd | 6 man/telconetworkbuilder.Rd | 2 man/telconetworkbuilder_get_sol_function_instance.Rd | 4 man/telconetworkbuilder_instantiate_sol_network_instance.Rd | 6 man/telconetworkbuilder_list_sol_network_operations.Rd | 6 man/telconetworkbuilder_terminate_sol_network_instance.Rd | 6 man/telconetworkbuilder_update_sol_network_instance.Rd | 25 man/vpclattice_create_access_log_subscription.Rd | 2 man/vpclattice_create_listener.Rd | 14 man/vpclattice_create_service_network_service_association.Rd | 2 man/vpclattice_create_target_group.Rd | 3 man/vpclattice_delete_auth_policy.Rd | 2 man/vpclattice_delete_service_network_service_association.Rd | 2 man/vpclattice_get_resource_policy.Rd | 4 man/vpclattice_list_target_groups.Rd | 2 man/vpclattice_list_targets.Rd | 4 man/vpclattice_put_auth_policy.Rd | 5 man/vpclattice_put_resource_policy.Rd | 3 man/vpclattice_update_service_network_vpc_association.Rd | 5 111 files changed, 2980 insertions(+), 1628 deletions(-)
More information about paws.networking at CRAN
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Title: 'Amazon Web Services' Management & Governance Services
Description: Interface to 'Amazon Web Services' management and governance
services, including 'CloudWatch' application and infrastructure
monitoring, 'Auto Scaling' for automatically scaling resources, and
more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.management versions 0.6.1 dated 2024-05-16 and 0.7.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 460 +++---- R/applicationautoscaling_operations.R | 258 ++-- R/applicationautoscaling_service.R | 10 R/applicationcostprofiler_operations.R | 18 R/applicationcostprofiler_service.R | 4 R/applicationinsights_operations.R | 99 + R/applicationinsights_service.R | 4 R/appregistry_operations.R | 72 - R/appregistry_service.R | 4 R/auditmanager_interfaces.R | 34 R/auditmanager_operations.R | 237 ++- R/auditmanager_service.R | 6 R/autoscaling_operations.R | 291 ++-- R/autoscaling_service.R | 8 R/autoscalingplans_operations.R | 18 R/autoscalingplans_service.R | 4 R/cloudformation_interfaces.R | 4 R/cloudformation_operations.R | 267 ++-- R/cloudformation_service.R | 4 R/cloudtrail_interfaces.R | 2 R/cloudtrail_operations.R | 170 +- R/cloudtrail_service.R | 4 R/cloudtraildataservice_operations.R | 3 R/cloudtraildataservice_service.R | 4 R/cloudwatch_operations.R | 604 ++++----- R/cloudwatch_service.R | 4 R/cloudwatchevents_operations.R | 153 +- R/cloudwatchevents_service.R | 4 R/cloudwatchevidently_operations.R | 114 + R/cloudwatchevidently_service.R | 4 R/cloudwatchinternetmonitor_operations.R | 57 R/cloudwatchinternetmonitor_service.R | 6 R/cloudwatchlogs_interfaces.R | 4 R/cloudwatchlogs_operations.R | 242 ++- R/cloudwatchlogs_service.R | 4 R/cloudwatchobservabilityaccessmanager_operations.R | 45 R/cloudwatchobservabilityaccessmanager_service.R | 4 R/cloudwatchrum_operations.R | 51 R/cloudwatchrum_service.R | 4 R/configservice_operations.R | 276 ++-- R/configservice_service.R | 4 R/controltower_interfaces.R | 30 R/controltower_operations.R | 204 ++- R/controltower_service.R | 192 ++ R/finspace_operations.R | 150 +- R/finspace_service.R | 4 R/health_operations.R | 42 R/health_service.R | 9 R/licensemanager_operations.R | 150 +- R/licensemanager_service.R | 4 R/licensemanagerlinuxsubscriptions_interfaces.R | 86 + R/licensemanagerlinuxsubscriptions_operations.R | 289 ++++ R/licensemanagerlinuxsubscriptions_service.R | 15 R/licensemanagerusersubscriptions_operations.R | 33 R/licensemanagerusersubscriptions_service.R | 4 R/managedgrafana_interfaces.R | 72 + R/managedgrafana_operations.R | 274 +++- R/managedgrafana_service.R | 10 R/opsworks_operations.R | 645 +++++----- R/opsworks_service.R | 68 - R/opsworkscm_operations.R | 57 R/opsworkscm_service.R | 4 R/organizations_operations.R | 169 +- R/organizations_service.R | 4 R/pi_interfaces.R | 2 R/pi_operations.R | 53 R/pi_service.R | 4 R/prometheusservice_operations.R | 78 - R/prometheusservice_service.R | 4 R/resiliencehub_interfaces.R | 76 + R/resiliencehub_operations.R | 403 +++++- R/resiliencehub_service.R | 12 R/resourcegroups_operations.R | 54 R/resourcegroups_service.R | 4 R/resourcegroupstaggingapi_operations.R | 24 R/resourcegroupstaggingapi_service.R | 4 R/servicecatalog_operations.R | 270 ++-- R/servicecatalog_service.R | 4 R/servicequotas_operations.R | 57 R/servicequotas_service.R | 4 R/ssm_interfaces.R | 4 R/ssm_operations.R | 498 +++++-- R/ssm_service.R | 4 R/ssmcontacts_operations.R | 117 + R/ssmcontacts_service.R | 4 R/ssmincidents_operations.R | 93 - R/ssmincidents_service.R | 4 R/ssmsap_interfaces.R | 42 R/ssmsap_operations.R | 163 ++ R/ssmsap_service.R | 9 R/support_operations.R | 48 R/support_service.R | 8 R/supportapp_operations.R | 30 R/supportapp_service.R | 4 R/synthetics_operations.R | 63 R/synthetics_service.R | 4 man/applicationautoscaling.Rd | 3 man/applicationautoscaling_delete_scaling_policy.Rd | 18 man/applicationautoscaling_delete_scheduled_action.Rd | 18 man/applicationautoscaling_deregister_scalable_target.Rd | 18 man/applicationautoscaling_describe_scalable_targets.Rd | 18 man/applicationautoscaling_describe_scaling_activities.Rd | 18 man/applicationautoscaling_describe_scaling_policies.Rd | 18 man/applicationautoscaling_describe_scheduled_actions.Rd | 18 man/applicationautoscaling_put_scaling_policy.Rd | 18 man/applicationautoscaling_put_scheduled_action.Rd | 20 man/applicationautoscaling_register_scalable_target.Rd | 25 man/applicationautoscaling_tag_resource.Rd | 4 man/auditmanager.Rd | 2 man/auditmanager_get_services_in_scope.Rd | 6 man/auditmanager_list_asses_contr_insig_by_contr_domai.Rd | 8 man/auditmanager_list_control_insights_by_control_domain.Rd | 8 man/auditmanager_list_controls.Rd | 37 man/autoscaling.Rd | 4 man/autoscaling_create_auto_scaling_group.Rd | 18 man/autoscaling_create_launch_configuration.Rd | 23 man/autoscaling_disable_metrics_collection.Rd | 2 man/autoscaling_enable_metrics_collection.Rd | 2 man/autoscaling_put_scaling_policy.Rd | 2 man/autoscaling_put_warm_pool.Rd | 2 man/autoscaling_set_instance_health.Rd | 5 man/autoscaling_update_auto_scaling_group.Rd | 12 man/cloudformation_create_change_set.Rd | 2 man/cloudformation_delete_stack.Rd | 11 man/cloudformation_delete_stack_instances.Rd | 2 man/cloudformation_detect_stack_set_drift.Rd | 2 man/cloudformation_import_stacks_to_stack_set.Rd | 2 man/cloudformation_register_type.Rd | 2 man/cloudtrail_create_event_data_store.Rd | 4 man/cloudtrail_create_trail.Rd | 5 man/cloudtrail_put_event_selectors.Rd | 2 man/cloudtrail_start_import.Rd | 2 man/cloudtrail_update_trail.Rd | 4 man/cloudwatch_put_metric_stream.Rd | 2 man/cloudwatchinternetmonitor_start_query.Rd | 7 man/cloudwatchlogs_filter_log_events.Rd | 9 man/cloudwatchlogs_put_account_policy.Rd | 2 man/cloudwatchlogs_put_delivery_source.Rd | 3 man/cloudwatchlogs_put_log_events.Rd | 5 man/controltower.Rd | 136 +- man/controltower_create_landing_zone.Rd | 4 man/controltower_disable_baseline.Rd | 2 man/controltower_disable_control.Rd | 2 man/controltower_enable_baseline.Rd | 2 man/controltower_enable_control.Rd | 2 man/controltower_get_baseline.Rd | 2 man/controltower_get_baseline_operation.Rd | 2 man/controltower_get_control_operation.Rd | 2 man/controltower_get_enabled_control.Rd | 2 man/controltower_get_landing_zone_operation.Rd | 2 man/controltower_list_baselines.Rd | 2 man/controltower_list_control_operations.Rd |only man/controltower_list_enabled_baselines.Rd | 2 man/controltower_list_enabled_controls.Rd | 11 man/controltower_list_landing_zone_operations.Rd |only man/controltower_list_tags_for_resource.Rd | 2 man/controltower_reset_enabled_baseline.Rd | 2 man/controltower_reset_landing_zone.Rd | 2 man/controltower_tag_resource.Rd | 2 man/controltower_untag_resource.Rd | 2 man/controltower_update_enabled_baseline.Rd | 2 man/controltower_update_landing_zone.Rd | 7 man/health.Rd | 5 man/licensemanagerlinuxsubscriptions.Rd | 11 man/licensemanagerlinuxsubscriptions_de_su_pr.Rd |only man/licensemanagerlinuxsubscriptions_get_reg_sub_pro.Rd |only man/licensemanagerlinuxsubscriptions_get_service_settings.Rd | 4 man/licensemanagerlinuxsubscriptions_lis_lin_sub_ins.Rd | 29 man/licensemanagerlinuxsubscriptions_lis_reg_sub_pro.Rd |only man/licensemanagerlinuxsubscriptions_list_linux_subscriptions.Rd | 5 man/licensemanagerlinuxsubscriptions_list_tags_for_resource.Rd |only man/licensemanagerlinuxsubscriptions_re_su_pr.Rd |only man/licensemanagerlinuxsubscriptions_tag_resource.Rd |only man/licensemanagerlinuxsubscriptions_untag_resource.Rd |only man/managedgrafana.Rd | 6 man/managedgrafana_associate_license.Rd | 4 man/managedgrafana_create_workspace.Rd | 2 man/managedgrafana_create_workspace_api_key.Rd | 2 man/managedgrafana_create_workspace_service_account.Rd |only man/managedgrafana_create_workspace_service_account_token.Rd |only man/managedgrafana_delete_workspace_service_account.Rd |only man/managedgrafana_delete_workspace_service_account_token.Rd |only man/managedgrafana_list_workspace_service_account_tokens.Rd |only man/managedgrafana_list_workspace_service_accounts.Rd |only man/opsworks.Rd | 58 man/opsworks_attach_elastic_load_balancer.Rd | 2 man/opsworks_clone_stack.Rd | 74 - man/opsworks_create_app.Rd | 9 man/opsworks_create_instance.Rd | 30 man/opsworks_create_layer.Rd | 17 man/opsworks_create_stack.Rd | 93 - man/opsworks_create_user_profile.Rd | 6 man/opsworks_deregister_elastic_ip.Rd | 2 man/opsworks_deregister_instance.Rd | 4 man/opsworks_deregister_volume.Rd | 6 man/opsworks_describe_agent_versions.Rd | 4 man/opsworks_describe_ecs_clusters.Rd | 2 man/opsworks_describe_operating_systems.Rd | 5 man/opsworks_describe_service_errors.Rd | 4 man/opsworks_describe_stacks.Rd | 10 man/opsworks_grant_access.Rd | 6 man/opsworks_register_instance.Rd | 13 man/opsworks_set_load_based_auto_scaling.Rd | 6 man/opsworks_stop_instance.Rd | 10 man/opsworks_tag_resource.Rd | 4 man/opsworks_unassign_instance.Rd | 2 man/opsworks_update_elastic_ip.Rd | 2 man/opsworks_update_instance.Rd | 27 man/opsworks_update_layer.Rd | 16 man/opsworks_update_stack.Rd | 49 man/opsworks_update_user_profile.Rd | 6 man/opsworks_update_volume.Rd | 2 man/organizations_disable_aws_service_access.Rd | 2 man/organizations_enable_aws_service_access.Rd | 2 man/pi_describe_dimension_keys.Rd | 5 man/pi_list_available_resource_dimensions.Rd | 11 man/resiliencehub.Rd | 8 man/resiliencehub_accept_resource_grouping_recommendations.Rd |only man/resiliencehub_add_draft_app_version_resource_mappings.Rd | 2 man/resiliencehub_describe_resource_grouping_recommendation_task.Rd |only man/resiliencehub_list_app_assessment_compliance_drifts.Rd | 6 man/resiliencehub_list_app_assessment_resource_drifts.Rd |only man/resiliencehub_list_apps.Rd | 2 man/resiliencehub_list_recommendation_templates.Rd | 4 man/resiliencehub_list_resource_grouping_recommendations.Rd |only man/resiliencehub_reject_resource_grouping_recommendations.Rd |only man/resiliencehub_start_resource_grouping_recommendation_task.Rd |only man/ssm_create_activation.Rd | 4 man/ssm_create_patch_baseline.Rd | 35 man/ssm_get_command_invocation.Rd | 2 man/ssm_register_task_with_maintenance_window.Rd | 2 man/ssm_update_maintenance_window_task.Rd | 2 man/ssm_update_managed_instance_role.Rd | 2 man/ssm_update_patch_baseline.Rd | 35 man/ssmsap.Rd | 3 man/ssmsap_list_operation_events.Rd |only man/ssmsap_start_application.Rd |only man/ssmsap_stop_application.Rd |only man/support.Rd | 4 tests/testthat/test_controltower.R | 12 tests/testthat/test_licensemanagerlinuxsubscriptions.R | 8 tests/testthat/test_resiliencehub.R | 8 243 files changed, 6430 insertions(+), 3089 deletions(-)
More information about paws.management at CRAN
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Title: 'Amazon Web Services' Machine Learning Services
Description: Interface to 'Amazon Web Services' machine learning services,
including 'SageMaker' managed machine learning service, natural
language processing, speech recognition, translation, and more
<https://aws.amazon.com/machine-learning/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.machine.learning versions 0.6.0 dated 2024-05-10 and 0.7.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 292 - R/augmentedairuntime_operations.R | 15 R/augmentedairuntime_service.R | 4 R/bedrock_interfaces.R | 202 - R/bedrock_operations.R | 777 +++ R/bedrock_service.R | 26 R/bedrockruntime_interfaces.R | 38 R/bedrockruntime_operations.R | 255 + R/bedrockruntime_service.R | 11 R/comprehend_operations.R | 257 - R/comprehend_service.R | 4 R/comprehendmedical_operations.R | 78 R/comprehendmedical_service.R | 4 R/elasticinference_operations.R | 18 R/elasticinference_service.R | 4 R/forecastqueryservice_operations.R | 6 R/forecastqueryservice_service.R | 4 R/forecastservice_operations.R | 189 R/forecastservice_service.R | 4 R/frauddetector_operations.R | 219 - R/frauddetector_service.R | 4 R/lexmodelbuildingservice_operations.R | 130 R/lexmodelbuildingservice_service.R | 4 R/lexmodelsv2_interfaces.R | 20 R/lexmodelsv2_operations.R | 306 + R/lexmodelsv2_service.R | 4 R/lexruntimeservice_operations.R | 15 R/lexruntimeservice_service.R | 4 R/lexruntimev2_operations.R | 15 R/lexruntimev2_service.R | 4 R/lookoutequipment_operations.R | 147 R/lookoutequipment_service.R | 4 R/lookoutmetrics_operations.R | 90 R/lookoutmetrics_service.R | 4 R/machinelearning_operations.R | 84 R/machinelearning_service.R | 4 R/panorama_operations.R | 102 R/panorama_service.R | 4 R/personalize_interfaces.R | 50 R/personalize_operations.R | 375 + R/personalize_service.R | 12 R/personalizeevents_operations.R | 15 R/personalizeevents_service.R | 4 R/personalizeruntime_interfaces.R | 4 R/personalizeruntime_operations.R | 9 R/personalizeruntime_service.R | 4 R/polly_operations.R | 79 R/polly_service.R | 4 R/rekognition_interfaces.R | 4 R/rekognition_operations.R | 235 - R/rekognition_service.R | 4 R/sagemaker_interfaces.R | 250 + R/sagemaker_operations.R | 2195 +++++++---- R/sagemaker_service.R | 25 R/sagemakeredgemanager_operations.R | 9 R/sagemakeredgemanager_service.R | 4 R/sagemakerfeaturestoreruntime_operations.R | 12 R/sagemakerfeaturestoreruntime_service.R | 4 R/sagemakergeospatialcapabilities_operations.R | 57 R/sagemakergeospatialcapabilities_service.R | 4 R/sagemakermetrics_operations.R | 3 R/sagemakermetrics_service.R | 4 R/sagemakerruntime_operations.R | 9 R/sagemakerruntime_service.R | 4 R/textract_operations.R | 75 R/textract_service.R | 4 R/transcribeservice_operations.R | 129 R/transcribeservice_service.R | 4 R/translate_operations.R | 57 R/translate_service.R | 4 R/voiceid_operations.R | 87 R/voiceid_service.R | 4 man/bedrock.Rd | 20 man/bedrock_batch_delete_evaluation_job.Rd |only man/bedrock_create_evaluation_job.Rd | 2 man/bedrock_create_guardrail.Rd | 9 man/bedrock_create_guardrail_version.Rd | 2 man/bedrock_create_model_copy_job.Rd |only man/bedrock_create_model_import_job.Rd |only man/bedrock_create_model_invocation_job.Rd |only man/bedrock_create_provisioned_model_throughput.Rd | 8 man/bedrock_delete_custom_model.Rd | 2 man/bedrock_delete_guardrail.Rd | 2 man/bedrock_delete_imported_model.Rd |only man/bedrock_delete_provisioned_model_throughput.Rd | 2 man/bedrock_get_custom_model.Rd | 2 man/bedrock_get_evaluation_job.Rd | 2 man/bedrock_get_guardrail.Rd | 3 man/bedrock_get_imported_model.Rd |only man/bedrock_get_inference_profile.Rd |only man/bedrock_get_model_copy_job.Rd |only man/bedrock_get_model_customization_job.Rd | 2 man/bedrock_get_model_import_job.Rd |only man/bedrock_get_model_invocation_job.Rd |only man/bedrock_get_provisioned_model_throughput.Rd | 2 man/bedrock_list_custom_models.Rd | 18 man/bedrock_list_foundation_models.Rd | 6 man/bedrock_list_guardrails.Rd | 2 man/bedrock_list_imported_models.Rd |only man/bedrock_list_inference_profiles.Rd |only man/bedrock_list_model_copy_jobs.Rd |only man/bedrock_list_model_customization_jobs.Rd | 10 man/bedrock_list_model_import_jobs.Rd |only man/bedrock_list_model_invocation_jobs.Rd |only man/bedrock_list_provisioned_model_throughputs.Rd | 2 man/bedrock_stop_model_customization_job.Rd | 2 man/bedrock_stop_model_invocation_job.Rd |only man/bedrock_tag_resource.Rd | 2 man/bedrock_untag_resource.Rd | 2 man/bedrock_update_guardrail.Rd | 6 man/bedrock_update_provisioned_model_throughput.Rd | 2 man/bedrockruntime.Rd | 5 man/bedrockruntime_apply_guardrail.Rd |only man/bedrockruntime_converse.Rd |only man/bedrockruntime_converse_stream.Rd |only man/bedrockruntime_invoke_model.Rd | 12 man/bedrockruntime_invoke_model_with_response_stream.Rd | 12 man/comprehend_start_pii_entities_detection_job.Rd | 2 man/lexmodelbuildingservice_put_bot.Rd | 4 man/personalize.Rd | 8 man/personalize_create_batch_segment_job.Rd | 2 man/personalize_create_data_deletion_job.Rd |only man/personalize_create_solution.Rd | 16 man/personalize_describe_data_deletion_job.Rd |only man/personalize_list_data_deletion_jobs.Rd |only man/personalize_update_solution.Rd |only man/polly_describe_voices.Rd | 4 man/polly_start_speech_synthesis_task.Rd | 11 man/polly_synthesize_speech.Rd | 37 man/rekognition_create_dataset.Rd | 9 man/rekognition_create_project.Rd | 9 man/sagemaker.Rd | 21 man/sagemaker_create_auto_ml_job_v2.Rd | 5 man/sagemaker_create_hub_content_reference.Rd |only man/sagemaker_create_mlflow_tracking_server.Rd |only man/sagemaker_create_model_package.Rd | 17 man/sagemaker_create_optimization_job.Rd |only man/sagemaker_create_presigned_mlflow_tracking_server_url.Rd |only man/sagemaker_create_space.Rd | 5 man/sagemaker_create_workforce.Rd | 2 man/sagemaker_create_workteam.Rd | 8 man/sagemaker_delete_hub_content_reference.Rd |only man/sagemaker_delete_mlflow_tracking_server.Rd |only man/sagemaker_delete_optimization_job.Rd |only man/sagemaker_describe_cluster_node.Rd | 10 man/sagemaker_describe_hub.Rd | 4 man/sagemaker_describe_mlflow_tracking_server.Rd |only man/sagemaker_describe_optimization_job.Rd |only man/sagemaker_describe_workteam.Rd | 2 man/sagemaker_list_apps.Rd | 11 man/sagemaker_list_domains.Rd | 11 man/sagemaker_list_mlflow_tracking_servers.Rd |only man/sagemaker_list_model_package_groups.Rd | 9 man/sagemaker_list_optimization_jobs.Rd |only man/sagemaker_list_spaces.Rd | 11 man/sagemaker_list_user_profiles.Rd | 11 man/sagemaker_start_mlflow_tracking_server.Rd |only man/sagemaker_stop_mlflow_tracking_server.Rd |only man/sagemaker_stop_optimization_job.Rd |only man/sagemaker_update_mlflow_tracking_server.Rd |only man/sagemaker_update_model_package.Rd | 13 man/sagemaker_update_workteam.Rd | 10 tests/testthat/test_bedrock.R | 20 tests/testthat/test_personalize.R | 4 tests/testthat/test_sagemaker.R | 16 166 files changed, 5534 insertions(+), 2002 deletions(-)
More information about paws.machine.learning at CRAN
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Title: 'Amazon Web Services' End User Computing Services
Description: Interface to 'Amazon Web Services' end user computing
services, including collaborative document editing, mobile intranet,
and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.end.user.computing versions 0.6.0 dated 2024-05-10 and 0.7.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 105 ++- R/appstream_interfaces.R | 64 ++ R/appstream_operations.R | 401 +++++++++++--- R/appstream_service.R | 10 R/ivschat_interfaces.R | 38 - R/ivschat_operations.R | 147 ++--- R/ivschat_service.R | 99 --- R/nimblestudio_operations.R | 147 +++-- R/nimblestudio_service.R | 4 R/workdocs_operations.R | 132 +++- R/workdocs_service.R | 4 R/worklink_operations.R | 99 ++- R/worklink_service.R | 4 R/workmail_operations.R | 252 ++++++--- R/workmail_service.R | 4 R/workmailmessageflow_operations.R | 6 R/workmailmessageflow_service.R | 4 R/workspaces_interfaces.R | 118 ++++ R/workspaces_operations.R | 557 ++++++++++++++++---- R/workspaces_service.R | 15 R/workspacesweb_interfaces.R | 12 R/workspacesweb_operations.R | 194 ++++-- R/workspacesweb_service.R | 20 man/appstream.Rd | 6 man/appstream_create_fleet.Rd | 11 man/appstream_create_theme_for_stack.Rd |only man/appstream_delete_theme_for_stack.Rd |only man/appstream_describe_theme_for_stack.Rd |only man/appstream_update_fleet.Rd | 4 man/appstream_update_theme_for_stack.Rd |only man/ivschat.Rd | 84 --- man/ivschat_create_chat_token.Rd | 22 man/ivschat_create_logging_configuration.Rd | 6 man/ivschat_create_room.Rd | 20 man/ivschat_delete_message.Rd | 8 man/ivschat_disconnect_user.Rd | 6 man/ivschat_list_logging_configurations.Rd | 6 man/ivschat_list_rooms.Rd | 16 man/ivschat_send_event.Rd | 10 man/ivschat_update_logging_configuration.Rd | 12 man/ivschat_update_room.Rd | 16 man/workspaces.Rd | 11 man/workspaces_create_workspaces_pool.Rd |only man/workspaces_describe_workspace_directories.Rd | 8 man/workspaces_describe_workspaces_pool_sessions.Rd |only man/workspaces_describe_workspaces_pools.Rd |only man/workspaces_import_workspace_image.Rd | 6 man/workspaces_modify_streaming_properties.Rd |only man/workspaces_register_workspace_directory.Rd | 31 - man/workspaces_start_workspaces_pool.Rd |only man/workspaces_stop_workspaces_pool.Rd |only man/workspaces_terminate_workspaces_pool.Rd |only man/workspaces_terminate_workspaces_pool_session.Rd |only man/workspaces_update_workspaces_pool.Rd |only man/workspacesweb.Rd | 16 man/workspacesweb_create_identity_provider.Rd | 6 man/workspacesweb_create_ip_access_settings.Rd | 2 man/workspacesweb_create_user_settings.Rd | 4 man/workspacesweb_update_user_settings.Rd | 4 60 files changed, 1894 insertions(+), 867 deletions(-)
More information about paws.end.user.computing at CRAN
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Title: 'Amazon Web Services' Database Services
Description: Interface to 'Amazon Web Services' database services,
including 'Relational Database Service' ('RDS'), 'DynamoDB' 'NoSQL'
database, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.database versions 0.6.0 dated 2024-05-10 and 0.7.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 240 +- R/dax_operations.R | 63 R/dax_service.R | 4 R/docdb_interfaces.R | 12 R/docdb_operations.R | 230 +- R/docdb_service.R | 5 R/docdbelastic_operations.R | 48 R/docdbelastic_service.R | 4 R/dynamodb_interfaces.R | 36 R/dynamodb_operations.R | 263 +- R/dynamodb_service.R | 4 R/dynamodbstreams_operations.R | 12 R/dynamodbstreams_service.R | 4 R/elasticache_operations.R | 613 +++--- R/elasticache_service.R | 24 R/keyspaces_operations.R | 42 R/keyspaces_service.R | 4 R/lakeformation_interfaces.R | 12 R/lakeformation_operations.R | 192 + R/lakeformation_service.R | 5 R/memorydb_operations.R | 122 - R/memorydb_service.R | 20 R/neptune_operations.R | 207 +- R/neptune_service.R | 4 R/neptunedata_operations.R | 129 - R/neptunedata_service.R | 4 R/qldb_operations.R | 60 R/qldb_service.R | 4 R/qldbsession_operations.R | 3 R/qldbsession_service.R | 4 R/rds_interfaces.R | 96 R/rds_operations.R | 977 +++++++--- R/rds_service.R | 4 R/rdsdataservice_operations.R | 18 R/rdsdataservice_service.R | 4 R/redshift_operations.R | 433 ++-- R/redshift_service.R | 4 R/redshiftdataapiservice_interfaces.R | 12 R/redshiftdataapiservice_operations.R | 50 R/redshiftdataapiservice_service.R | 4 R/redshiftserverless_interfaces.R | 26 R/redshiftserverless_operations.R | 197 +- R/redshiftserverless_service.R | 4 R/simpledb_operations.R | 30 R/simpledb_service.R | 4 R/timestreamquery_operations.R | 50 R/timestreamquery_service.R | 4 R/timestreamwrite_operations.R | 57 R/timestreamwrite_service.R | 4 man/docdb.Rd | 1 man/docdb_failover_global_cluster.Rd |only man/dynamodb_batch_execute_statement.Rd | 2 man/dynamodb_create_table.Rd | 22 man/dynamodb_put_resource_policy.Rd | 29 man/dynamodb_restore_table_from_backup.Rd | 3 man/dynamodb_restore_table_to_point_in_time.Rd | 3 man/dynamodb_update_global_table_settings.Rd | 4 man/dynamodb_update_table.Rd | 15 man/elasticache.Rd | 20 man/elasticache_copy_serverless_cache_snapshot.Rd | 12 man/elasticache_create_cache_cluster.Rd | 38 man/elasticache_create_global_replication_group.Rd | 4 man/elasticache_create_replication_group.Rd | 72 man/elasticache_create_serverless_cache.Rd | 9 man/elasticache_create_serverless_cache_snapshot.Rd | 11 man/elasticache_create_user.Rd | 4 man/elasticache_create_user_group.Rd | 8 man/elasticache_decrease_node_groups_in_global_replication_group.Rd | 8 man/elasticache_decrease_replica_count.Rd | 24 man/elasticache_delete_serverless_cache.Rd | 4 man/elasticache_delete_serverless_cache_snapshot.Rd | 5 man/elasticache_delete_user.Rd | 4 man/elasticache_delete_user_group.Rd | 4 man/elasticache_describe_cache_clusters.Rd | 2 man/elasticache_describe_reserved_cache_nodes.Rd | 14 man/elasticache_describe_reserved_cache_nodes_offerings.Rd | 14 man/elasticache_describe_serverless_cache_snapshots.Rd | 17 man/elasticache_describe_update_actions.Rd | 4 man/elasticache_describe_users.Rd | 2 man/elasticache_export_serverless_cache_snapshot.Rd | 6 man/elasticache_increase_replica_count.Rd | 20 man/elasticache_list_allowed_node_type_modifications.Rd | 6 man/elasticache_modify_cache_cluster.Rd | 22 man/elasticache_modify_replication_group.Rd | 34 man/elasticache_modify_replication_group_shard_configuration.Rd | 8 man/elasticache_modify_serverless_cache.Rd | 17 man/elasticache_purchase_reserved_cache_nodes_offering.Rd | 2 man/elasticache_start_migration.Rd | 4 man/elasticache_test_failover.Rd | 6 man/lakeformation.Rd | 1 man/lakeformation_get_data_lake_principal.Rd |only man/memorydb.Rd | 16 man/memorydb_create_cluster.Rd | 2 man/memorydb_describe_engine_versions.Rd | 6 man/rds_create_db_cluster.Rd | 75 man/rds_create_db_instance.Rd | 64 man/rds_create_db_shard_group.Rd | 4 man/rds_create_event_subscription.Rd | 4 man/rds_create_global_cluster.Rd | 23 man/rds_delete_db_cluster.Rd | 20 man/rds_modify_db_instance.Rd | 16 man/rds_modify_db_shard_group.Rd | 5 man/rds_modify_event_subscription.Rd | 4 man/rds_promote_read_replica.Rd | 4 man/rds_restore_db_cluster_from_s3.Rd | 32 man/rds_restore_db_cluster_from_snapshot.Rd | 32 man/rds_restore_db_cluster_to_point_in_time.Rd | 32 man/rds_restore_db_instance_from_db_snapshot.Rd | 50 man/rds_restore_db_instance_from_s3.Rd | 34 man/rds_restore_db_instance_to_point_in_time.Rd | 48 man/rds_switchover_read_replica.Rd | 2 man/redshift_create_cluster.Rd | 7 man/redshift_modify_cluster.Rd | 7 man/redshift_restore_from_cluster_snapshot.Rd | 20 man/redshiftdataapiservice_batch_execute_statement.Rd | 12 man/redshiftdataapiservice_execute_statement.Rd | 12 man/redshiftserverless_create_scheduled_action.Rd | 2 man/redshiftserverless_create_workgroup.Rd | 10 man/redshiftserverless_update_scheduled_action.Rd | 2 man/redshiftserverless_update_workgroup.Rd | 10 man/timestreamquery_update_account_settings.Rd | 7 122 files changed, 3568 insertions(+), 1841 deletions(-)
Title: 'Amazon Web Services' Customer Engagement Services
Description: Interface to 'Amazon Web Services' customer engagement
services, including 'Simple Email Service', 'Connect' contact center
service, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.customer.engagement versions 0.6.0 dated 2024-05-10 and 0.7.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 162 R/connect_interfaces.R | 160 R/connect_operations.R | 1774 +++++++--- R/connect_service.R | 28 R/connectcampaignservice_operations.R | 66 R/connectcampaignservice_service.R | 4 R/connectcases_interfaces.R | 6 R/connectcases_operations.R | 104 R/connectcases_service.R | 4 R/connectcontactlens_interfaces.R | 2 R/connectcontactlens_operations.R | 5 R/connectcontactlens_service.R | 26 R/connectparticipant_operations.R | 27 R/connectparticipant_service.R | 4 R/connectwisdomservice_operations.R | 123 R/connectwisdomservice_service.R | 4 R/customerprofiles_interfaces.R | 8 R/customerprofiles_operations.R | 165 R/customerprofiles_service.R | 13 R/pinpoint_interfaces.R | 28 R/pinpoint_operations.R | 366 +- R/pinpoint_service.R | 4 R/pinpointemail_operations.R | 126 R/pinpointemail_service.R | 4 R/pinpointsmsvoice_operations.R | 24 R/pinpointsmsvoice_service.R | 4 R/pinpointsmsvoicev2_operations.R | 345 + R/pinpointsmsvoicev2_service.R | 49 R/ses_interfaces.R | 10 R/ses_operations.R | 217 - R/ses_service.R | 4 R/sesv2_interfaces.R | 16 R/sesv2_operations.R | 290 + R/sesv2_service.R | 4 man/connect.Rd | 23 man/connect_batch_get_attached_file_metadata.Rd |only man/connect_complete_attached_file_upload.Rd |only man/connect_create_contact_flow.Rd | 6 man/connect_create_predefined_attribute.Rd | 2 man/connect_create_prompt.Rd | 2 man/connect_delete_attached_file.Rd |only man/connect_delete_queue.Rd | 2 man/connect_describe_authentication_profile.Rd |only man/connect_describe_predefined_attribute.Rd | 2 man/connect_describe_security_profile.Rd | 4 man/connect_get_attached_file.Rd |only man/connect_get_metric_data_v2.Rd | 439 +- man/connect_list_authentication_profiles.Rd |only man/connect_list_predefined_attributes.Rd | 2 man/connect_search_agent_statuses.Rd |only man/connect_search_contact_flow_modules.Rd |only man/connect_search_contact_flows.Rd |only man/connect_search_predefined_attributes.Rd | 4 man/connect_search_resource_tags.Rd | 14 man/connect_search_user_hierarchy_groups.Rd |only man/connect_start_attached_file_upload.Rd |only man/connect_start_web_rtc_contact.Rd | 6 man/connect_update_authentication_profile.Rd |only man/connect_update_contact_attributes.Rd | 15 man/connect_update_contact_routing_data.Rd | 12 man/connect_update_predefined_attribute.Rd | 2 man/connectcases_delete_field.Rd | 2 man/connectcontactlens.Rd | 19 man/connectcontactlens_list_realtime_contact_analysis_segments.Rd | 2 man/customerprofiles.Rd | 7 man/customerprofiles_create_profile.Rd | 2 man/customerprofiles_put_profile_object_type.Rd | 3 man/customerprofiles_update_profile.Rd | 2 man/pinpointsmsvoicev2.Rd | 45 man/pinpointsmsvoicev2_create_event_destination.Rd | 4 man/pinpointsmsvoicev2_create_pool.Rd | 9 man/pinpointsmsvoicev2_delete_text_message_spend_limit_override.Rd | 2 man/pinpointsmsvoicev2_delete_voice_message_spend_limit_override.Rd | 2 man/pinpointsmsvoicev2_describe_account_limits.Rd | 6 man/pinpointsmsvoicev2_describe_spend_limits.Rd | 6 man/pinpointsmsvoicev2_request_phone_number.Rd | 2 man/pinpointsmsvoicev2_send_text_message.Rd | 29 man/pinpointsmsvoicev2_send_voice_message.Rd | 5 man/pinpointsmsvoicev2_tag_resource.Rd | 5 man/pinpointsmsvoicev2_untag_resource.Rd | 5 man/pinpointsmsvoicev2_updat_prote_confi_count_rule_set.Rd | 2 man/pinpointsmsvoicev2_update_event_destination.Rd | 4 man/pinpointsmsvoicev2_update_phone_number.Rd | 10 man/pinpointsmsvoicev2_update_pool.Rd | 10 man/ses_send_bulk_templated_email.Rd | 4 man/sesv2_create_configuration_set_event_destination.Rd | 2 man/sesv2_put_account_details.Rd | 4 88 files changed, 3507 insertions(+), 1407 deletions(-)
More information about paws.customer.engagement at CRAN
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Title: 'Amazon Web Services' Compute Services
Description: Interface to 'Amazon Web Services' compute services,
including 'Elastic Compute Cloud' ('EC2'), 'Lambda'
functions-as-a-service, containers, batch processing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.compute versions 0.6.1 dated 2024-05-16 and 0.7.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 430 - R/apprunner_operations.R | 111 R/apprunner_service.R | 4 R/batch_interfaces.R | 26 R/batch_operations.R | 139 R/batch_service.R | 5 R/braket_operations.R | 39 R/braket_service.R | 4 R/computeoptimizer_interfaces.R | 46 R/computeoptimizer_operations.R | 250 R/computeoptimizer_service.R | 7 R/ec2_interfaces.R | 156 R/ec2_operations.R | 2742 ++++++---- R/ec2_service.R | 37 R/ec2instanceconnect_operations.R | 6 R/ec2instanceconnect_service.R | 4 R/ecr_interfaces.R | 72 R/ecr_operations.R | 406 + R/ecr_service.R | 10 R/ecrpublic_operations.R | 69 R/ecrpublic_service.R | 4 R/ecs_interfaces.R | 52 R/ecs_operations.R | 244 R/ecs_service.R | 4 R/eks_interfaces.R | 44 R/eks_operations.R | 358 - R/eks_service.R | 4 R/elasticbeanstalk_operations.R | 141 R/elasticbeanstalk_service.R | 4 R/emrcontainers_operations.R | 69 R/emrcontainers_service.R | 4 R/emrserverless_interfaces.R | 32 R/emrserverless_operations.R | 113 R/emrserverless_service.R | 5 R/imagebuilder_operations.R | 221 R/imagebuilder_service.R | 4 R/lambda_interfaces.R | 38 R/lambda_operations.R | 425 + R/lambda_service.R | 10 R/lightsail_interfaces.R | 2 R/lightsail_operations.R | 526 + R/lightsail_service.R | 4 R/proton_operations.R | 261 R/proton_service.R | 4 R/serverlessapplicationrepository_operations.R | 130 R/serverlessapplicationrepository_service.R | 4 man/batch.Rd | 1 man/batch_cancel_job.Rd | 2 man/batch_create_compute_environment.Rd | 5 man/batch_get_job_queue_snapshot.Rd |only man/batch_list_jobs.Rd | 22 man/batch_update_compute_environment.Rd | 5 man/computeoptimizer.Rd | 3 man/computeoptimizer_delete_recommendation_preferences.Rd | 5 man/computeoptimizer_export_rds_database_recommendations.Rd |only man/computeoptimizer_get_rds_datab_recom_proje_metri.Rd |only man/computeoptimizer_get_rds_database_recommendations.Rd |only man/computeoptimizer_get_recommendation_preferences.Rd | 5 man/computeoptimizer_put_recommendation_preferences.Rd | 13 man/ec2.Rd | 33 man/ec2_accept_address_transfer.Rd | 2 man/ec2_allocate_address.Rd | 10 man/ec2_allocate_hosts.Rd | 4 man/ec2_allocate_ipam_pool_cidr.Rd | 2 man/ec2_assign_ipv_6_addresses.Rd | 2 man/ec2_assign_private_nat_gateway_address.Rd | 4 man/ec2_associate_client_vpn_target_network.Rd | 2 man/ec2_associate_trunk_interface.Rd | 2 man/ec2_attach_verified_access_trust_provider.Rd | 2 man/ec2_authorize_client_vpn_ingress.Rd | 2 man/ec2_copy_image.Rd | 8 man/ec2_copy_snapshot.Rd | 13 man/ec2_create_capacity_reservation_by_splitting.Rd |only man/ec2_create_capacity_reservation_fleet.Rd | 6 man/ec2_create_client_vpn_endpoint.Rd | 2 man/ec2_create_client_vpn_route.Rd | 2 man/ec2_create_customer_gateway.Rd | 24 man/ec2_create_flow_logs.Rd | 2 man/ec2_create_instance_connect_endpoint.Rd | 12 man/ec2_create_ipam.Rd | 8 man/ec2_create_ipam_external_resource_verification_token.Rd |only man/ec2_create_ipam_pool.Rd | 25 man/ec2_create_ipam_scope.Rd | 2 man/ec2_create_launch_template_version.Rd | 2 man/ec2_create_managed_prefix_list.Rd | 2 man/ec2_create_network_interface.Rd | 2 man/ec2_create_network_interface_permission.Rd | 2 man/ec2_create_public_ipv_4_pool.Rd | 12 man/ec2_create_spot_datafeed_subscription.Rd | 2 man/ec2_create_subnet.Rd | 2 man/ec2_create_subnet_cidr_reservation.Rd | 2 man/ec2_create_traffic_mirror_filter_rule.Rd | 5 man/ec2_create_traffic_mirror_session.Rd | 2 man/ec2_create_verified_access_endpoint.Rd | 2 man/ec2_create_verified_access_group.Rd | 2 man/ec2_create_verified_access_instance.Rd | 2 man/ec2_create_verified_access_trust_provider.Rd | 2 man/ec2_create_volume.Rd | 19 man/ec2_create_vpc_endpoint_connection_notification.Rd | 2 man/ec2_delete_ipam_external_resource_verification_token.Rd |only man/ec2_delete_public_ipv_4_pool.Rd | 8 man/ec2_delete_transit_gateway_route_table.Rd | 2 man/ec2_delete_verified_access_endpoint.Rd | 2 man/ec2_delete_verified_access_group.Rd | 2 man/ec2_delete_verified_access_instance.Rd | 2 man/ec2_delete_verified_access_trust_provider.Rd | 2 man/ec2_describe_address_transfers.Rd | 2 man/ec2_describe_dhcp_options.Rd | 8 man/ec2_describe_egress_only_internet_gateways.Rd | 4 man/ec2_describe_elastic_gpus.Rd | 2 man/ec2_describe_identity_id_format.Rd | 2 man/ec2_describe_instance_status.Rd | 3 man/ec2_describe_instances.Rd | 4 man/ec2_describe_internet_gateways.Rd | 4 man/ec2_describe_ipam_external_resource_verification_tokens.Rd |only man/ec2_describe_launch_template_versions.Rd | 2 man/ec2_describe_nat_gateways.Rd | 4 man/ec2_describe_network_acls.Rd | 8 man/ec2_describe_network_interface_permissions.Rd | 3 man/ec2_describe_network_interfaces.Rd | 4 man/ec2_describe_placement_groups.Rd | 12 man/ec2_describe_replace_root_volume_tasks.Rd | 2 man/ec2_describe_reserved_instances_offerings.Rd | 2 man/ec2_describe_route_tables.Rd | 10 man/ec2_describe_snapshots.Rd | 8 man/ec2_describe_spot_datafeed_subscription.Rd | 2 man/ec2_describe_spot_instance_requests.Rd | 2 man/ec2_describe_spot_price_history.Rd | 2 man/ec2_describe_stale_security_groups.Rd | 2 man/ec2_describe_subnets.Rd | 4 man/ec2_describe_traffic_mirror_filter_rules.Rd |only man/ec2_describe_transit_gateways.Rd | 5 man/ec2_describe_volume_status.Rd | 5 man/ec2_describe_volumes.Rd | 13 man/ec2_describe_volumes_modifications.Rd | 4 man/ec2_describe_vpc_endpoints.Rd | 2 man/ec2_describe_vpc_peering_connections.Rd | 4 man/ec2_describe_vpcs.Rd | 8 man/ec2_detach_verified_access_trust_provider.Rd | 2 man/ec2_disable_address_transfer.Rd | 2 man/ec2_disassociate_trunk_interface.Rd | 2 man/ec2_enable_address_transfer.Rd | 2 man/ec2_enable_snapshot_block_public_access.Rd | 8 man/ec2_get_instance_tpm_ek_pub.Rd |only man/ec2_list_images_in_recycle_bin.Rd | 2 man/ec2_modify_availability_zone_group.Rd | 12 man/ec2_modify_capacity_reservation.Rd | 20 man/ec2_modify_capacity_reservation_fleet.Rd | 2 man/ec2_modify_ebs_default_kms_key_id.Rd | 7 man/ec2_modify_instance_attribute.Rd | 14 man/ec2_modify_instance_placement.Rd | 2 man/ec2_modify_ipam.Rd | 6 man/ec2_modify_subnet_attribute.Rd | 8 man/ec2_modify_verified_access_endpoint.Rd | 2 man/ec2_modify_verified_access_endpoint_policy.Rd | 2 man/ec2_modify_verified_access_group.Rd | 2 man/ec2_modify_verified_access_group_policy.Rd | 2 man/ec2_modify_verified_access_instance.Rd | 2 man/ec2_modify_verified_access_instance_logging_configuration.Rd | 2 man/ec2_modify_verified_access_trust_provider.Rd | 2 man/ec2_modify_volume.Rd | 4 man/ec2_move_capacity_reservation_instances.Rd |only man/ec2_provision_ipam_pool_cidr.Rd | 17 man/ec2_provision_public_ipv_4_pool_cidr.Rd | 11 man/ec2_register_image.Rd | 2 man/ec2_register_transit_gateway_multicast_group_members.Rd | 2 man/ec2_request_spot_instances.Rd | 4 man/ec2_restore_image_from_recycle_bin.Rd | 2 man/ec2_run_instances.Rd | 49 man/ec2_stop_instances.Rd | 2 man/ecr.Rd | 6 man/ecr_create_repository_creation_template.Rd |only man/ecr_delete_repository_creation_template.Rd |only man/ecr_describe_repository_creation_templates.Rd |only man/ecr_get_account_setting.Rd |only man/ecr_put_account_setting.Rd |only man/ecr_put_replication_configuration.Rd | 2 man/ecr_update_repository_creation_template.Rd |only man/ecs_create_cluster.Rd | 2 man/ecs_create_service.Rd | 4 man/ecs_create_task_set.Rd | 4 man/ecs_delete_task_set.Rd | 2 man/ecs_describe_task_sets.Rd | 2 man/ecs_register_task_definition.Rd | 33 man/ecs_run_task.Rd | 4 man/ecs_start_task.Rd | 2 man/ecs_stop_task.Rd | 4 man/ecs_update_service.Rd | 10 man/ecs_update_service_primary_task_set.Rd | 2 man/ecs_update_task_protection.Rd | 2 man/ecs_update_task_set.Rd | 2 man/eks_create_addon.Rd | 9 man/eks_create_cluster.Rd | 20 man/eks_create_nodegroup.Rd | 27 man/eks_update_addon.Rd | 11 man/eks_update_cluster_config.Rd | 8 man/eks_update_nodegroup_version.Rd | 4 man/emrserverless.Rd | 1 man/emrserverless_create_application.Rd | 6 man/emrserverless_get_dashboard_for_job_run.Rd | 9 man/emrserverless_get_job_run.Rd | 5 man/emrserverless_list_job_run_attempts.Rd |only man/emrserverless_list_job_runs.Rd | 5 man/emrserverless_start_job_run.Rd | 8 man/emrserverless_update_application.Rd | 4 man/imagebuilder_update_infrastructure_configuration.Rd | 2 man/lambda.Rd | 6 man/lambda_add_permission.Rd | 30 man/lambda_create_event_source_mapping.Rd | 27 man/lambda_create_function.Rd | 11 man/lambda_get_function_recursion_config.Rd |only man/lambda_list_layer_versions.Rd | 6 man/lambda_list_layers.Rd | 6 man/lambda_put_function_recursion_config.Rd |only man/lambda_remove_permission.Rd | 6 man/lambda_update_event_source_mapping.Rd | 27 man/lambda_update_function_configuration.Rd | 9 man/lightsail_create_instances.Rd | 10 man/lightsail_create_instances_from_snapshot.Rd | 6 man/lightsail_create_load_balancer.Rd | 4 man/lightsail_create_relational_database.Rd | 4 man/lightsail_set_ip_address_type.Rd | 23 man/serverlessapplicationrepository_cre_clo_for_cha_set.Rd | 16 tests/testthat/test_ec2.R | 16 tests/testthat/test_ecr.R | 4 226 files changed, 5641 insertions(+), 2693 deletions(-)
Title: 'Amazon Web Services' Application Integration Services
Description: Interface to 'Amazon Web Services' application integration
services, including 'Simple Queue Service' ('SQS') message queue,
'Simple Notification Service' ('SNS') publish/subscribe messaging, and
more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.application.integration versions 0.6.0 dated 2024-05-10 and 0.7.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 211 +- R/eventbridge_interfaces.R | 20 R/eventbridge_operations.R | 310 ++- R/eventbridge_service.R | 7 R/eventbridgepipes_interfaces.R | 20 R/eventbridgepipes_operations.R | 72 R/eventbridgepipes_service.R | 6 R/eventbridgescheduler_operations.R | 36 R/eventbridgescheduler_service.R | 4 R/locationservice_interfaces.R | 186 +- R/locationservice_operations.R | 1001 ++++++------ R/locationservice_service.R | 10 R/mq_operations.R | 126 + R/mq_service.R | 4 R/mwaa_interfaces.R | 12 R/mwaa_operations.R | 351 ++-- R/mwaa_service.R | 6 R/resourceexplorer_operations.R | 63 R/resourceexplorer_service.R | 4 R/schemas_operations.R | 93 - R/schemas_service.R | 4 R/sfn_interfaces.R | 24 R/sfn_operations.R | 189 +- R/sfn_service.R | 10 R/sns_operations.R | 157 + R/sns_service.R | 4 R/sqs_interfaces.R | 2 R/sqs_operations.R | 144 + R/sqs_service.R | 6 R/swf_interfaces.R | 20 R/swf_operations.R | 173 +- R/swf_service.R | 12 man/eventbridge.Rd | 3 man/eventbridge_create_event_bus.Rd | 40 man/eventbridge_delete_endpoint.Rd | 2 man/eventbridge_describe_endpoint.Rd | 2 man/eventbridge_list_endpoints.Rd | 2 man/eventbridge_put_rule.Rd | 28 man/eventbridge_test_event_pattern.Rd | 2 man/eventbridge_update_endpoint.Rd | 2 man/eventbridge_update_event_bus.Rd |only man/eventbridgepipes_create_pipe.Rd | 34 man/eventbridgepipes_list_pipes.Rd | 26 man/eventbridgepipes_update_pipe.Rd | 26 man/locationservice.Rd | 4 man/locationservice_associate_tracker_consumer.Rd | 8 man/locationservice_batch_delete_device_position_history.Rd | 8 man/locationservice_batch_get_device_position.Rd | 6 man/locationservice_calculate_route.Rd | 126 - man/locationservice_calculate_route_matrix.Rd | 80 man/locationservice_create_geofence_collection.Rd | 16 man/locationservice_create_key.Rd | 20 man/locationservice_create_map.Rd | 16 man/locationservice_create_place_index.Rd | 32 man/locationservice_create_route_calculator.Rd | 6 man/locationservice_create_tracker.Rd | 102 - man/locationservice_delete_key.Rd | 6 man/locationservice_disassociate_tracker_consumer.Rd | 6 man/locationservice_forecast_geofence_events.Rd |only man/locationservice_get_device_position.Rd | 6 man/locationservice_get_device_position_history.Rd | 40 man/locationservice_get_map_glyphs.Rd | 10 man/locationservice_get_map_sprites.Rd | 10 man/locationservice_get_map_style_descriptor.Rd | 6 man/locationservice_get_map_tile.Rd | 10 man/locationservice_get_place.Rd | 40 man/locationservice_list_device_positions.Rd | 8 man/locationservice_list_geofences.Rd | 12 man/locationservice_list_keys.Rd | 6 man/locationservice_list_tracker_consumers.Rd | 10 man/locationservice_put_geofence.Rd | 19 man/locationservice_search_place_index_for_position.Rd | 36 man/locationservice_search_place_index_for_suggestions.Rd | 42 man/locationservice_search_place_index_for_text.Rd | 42 man/locationservice_update_geofence_collection.Rd | 8 man/locationservice_update_key.Rd | 14 man/locationservice_update_map.Rd | 16 man/locationservice_update_place_index.Rd | 14 man/locationservice_update_route_calculator.Rd | 8 man/locationservice_update_tracker.Rd | 36 man/locationservice_verify_device_position.Rd |only man/mq_create_broker.Rd | 20 man/mq_create_configuration.Rd | 9 man/mq_update_broker.Rd | 20 man/mwaa_create_environment.Rd | 206 +- man/mwaa_list_environments.Rd | 6 man/mwaa_update_environment.Rd | 162 + man/sfn.Rd | 6 man/sfn_create_activity.Rd | 6 man/sfn_create_state_machine.Rd | 7 man/sfn_describe_execution.Rd | 8 man/sfn_describe_state_machine.Rd | 13 man/sfn_describe_state_machine_for_execution.Rd | 7 man/sfn_start_execution.Rd | 2 man/sfn_start_sync_execution.Rd | 8 man/sfn_update_state_machine.Rd | 9 man/sfn_validate_state_machine_definition.Rd | 19 man/sns_create_topic.Rd | 2 man/sns_publish.Rd | 5 man/sns_set_subscription_attributes.Rd | 11 man/sns_subscribe.Rd | 11 man/sqs.Rd | 2 man/sqs_receive_message.Rd | 46 man/sqs_send_message.Rd | 11 man/sqs_set_queue_attributes.Rd | 4 man/swf.Rd | 4 man/swf_delete_activity_type.Rd |only man/swf_delete_workflow_type.Rd |only 109 files changed, 2952 insertions(+), 1945 deletions(-)
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Title: 'Amazon Web Services' Analytics Services
Description: Interface to 'Amazon Web Services' 'analytics' services,
including 'Elastic MapReduce' 'Hadoop' and 'Spark' big data service,
'Elasticsearch' search engine, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.analytics versions 0.6.0 dated 2024-05-10 and 0.7.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 334 +-- R/athena_operations.R | 206 + R/athena_service.R | 4 R/cloudsearch_operations.R | 78 R/cloudsearch_service.R | 4 R/cloudsearchdomain_operations.R | 9 R/cloudsearchdomain_service.R | 4 R/datapipeline_operations.R | 57 R/datapipeline_service.R | 4 R/datazone_interfaces.R | 456 ++++ R/datazone_operations.R | 1554 +++++++++++++-- R/datazone_service.R | 38 R/elasticsearchservice_operations.R | 153 - R/elasticsearchservice_service.R | 4 R/emr_interfaces.R | 6 R/emr_operations.R | 168 + R/emr_service.R | 4 R/entityresolution_interfaces.R | 44 R/entityresolution_operations.R | 139 - R/entityresolution_service.R | 4 R/firehose_interfaces.R | 6 R/firehose_operations.R | 52 R/firehose_service.R | 6 R/glue_interfaces.R | 212 +- R/glue_operations.R | 1119 ++++++++-- R/glue_service.R | 15 R/gluedatabrew_operations.R | 132 - R/gluedatabrew_service.R | 4 R/healthlake_operations.R | 39 R/healthlake_service.R | 4 R/ivs_interfaces.R | 70 R/ivs_operations.R | 249 +- R/ivs_service.R | 160 - R/ivsrealtime_interfaces.R | 110 - R/ivsrealtime_operations.R | 361 ++- R/ivsrealtime_service.R | 155 - R/kafka_interfaces.R | 8 R/kafka_operations.R | 156 + R/kafka_service.R | 4 R/kafkaconnect_operations.R | 48 R/kafkaconnect_service.R | 4 R/kendra_operations.R | 198 + R/kendra_service.R | 4 R/kendraranking_operations.R | 27 R/kendraranking_service.R | 4 R/kinesis_operations.R | 93 R/kinesis_service.R | 4 R/kinesisanalytics_operations.R | 60 R/kinesisanalytics_service.R | 4 R/kinesisanalyticsv2_interfaces.R | 50 R/kinesisanalyticsv2_operations.R | 168 + R/kinesisanalyticsv2_service.R | 6 R/mturk_operations.R | 117 - R/mturk_service.R | 4 R/opensearchingestion_interfaces.R | 20 R/opensearchingestion_operations.R | 49 R/opensearchingestion_service.R | 4 R/opensearchservice_interfaces.R | 24 R/opensearchservice_operations.R | 206 + R/opensearchservice_service.R | 4 R/opensearchserviceserverless_interfaces.R | 4 R/opensearchserviceserverless_operations.R | 111 - R/opensearchserviceserverless_service.R | 4 R/quicksight_interfaces.R | 88 R/quicksight_operations.R | 706 +++++- R/quicksight_service.R | 11 man/athena_get_query_runtime_statistics.Rd | 2 man/datazone.Rd | 34 man/datazone_add_entity_owner.Rd |only man/datazone_add_policy_grant.Rd |only man/datazone_associate_environment_role.Rd |only man/datazone_create_asset_filter.Rd |only man/datazone_create_data_product.Rd |only man/datazone_create_data_product_revision.Rd |only man/datazone_create_domain_unit.Rd |only man/datazone_create_environment.Rd | 9 man/datazone_create_environment_action.Rd |only man/datazone_create_project.Rd | 5 man/datazone_delete_asset.Rd | 4 man/datazone_delete_asset_filter.Rd |only man/datazone_delete_data_product.Rd |only man/datazone_delete_data_source.Rd | 10 man/datazone_delete_domain_unit.Rd |only man/datazone_delete_environment_action.Rd |only man/datazone_disassociate_environment_role.Rd |only man/datazone_get_asset_filter.Rd |only man/datazone_get_data_product.Rd |only man/datazone_get_domain_unit.Rd |only man/datazone_get_environment_action.Rd |only man/datazone_get_environment_credentials.Rd |only man/datazone_get_lineage_node.Rd |only man/datazone_get_listing.Rd | 2 man/datazone_list_asset_filters.Rd |only man/datazone_list_data_product_revisions.Rd |only man/datazone_list_domain_units_for_parent.Rd |only man/datazone_list_entity_owners.Rd |only man/datazone_list_environment_actions.Rd |only man/datazone_list_lineage_node_history.Rd |only man/datazone_list_policy_grants.Rd |only man/datazone_list_subscription_grants.Rd | 3 man/datazone_list_subscription_requests.Rd | 5 man/datazone_list_subscriptions.Rd | 5 man/datazone_post_lineage_event.Rd |only man/datazone_put_environment_blueprint_configuration.Rd | 3 man/datazone_remove_entity_owner.Rd |only man/datazone_remove_policy_grant.Rd |only man/datazone_update_asset_filter.Rd |only man/datazone_update_data_source.Rd | 4 man/datazone_update_domain_unit.Rd |only man/datazone_update_environment_action.Rd |only man/datazone_update_project.Rd | 3 man/entityresolution_add_policy_statement.Rd | 8 man/entityresolution_create_id_mapping_workflow.Rd | 8 man/entityresolution_put_policy.Rd | 8 man/entityresolution_update_id_mapping_workflow.Rd | 8 man/firehose.Rd | 2 man/firehose_create_delivery_stream.Rd | 7 man/firehose_update_destination.Rd | 9 man/glue.Rd | 11 man/glue_batch_put_data_quality_statistic_annotation.Rd |only man/glue_create_data_quality_ruleset.Rd | 4 man/glue_create_job.Rd | 44 man/glue_create_usage_profile.Rd |only man/glue_delete_usage_profile.Rd |only man/glue_get_data_quality_model.Rd |only man/glue_get_data_quality_model_result.Rd |only man/glue_get_databases.Rd | 7 man/glue_get_job_run.Rd | 2 man/glue_get_table.Rd | 6 man/glue_get_tables.Rd | 17 man/glue_get_usage_profile.Rd |only man/glue_get_workflow_run.Rd | 2 man/glue_list_data_quality_statistic_annotations.Rd |only man/glue_list_data_quality_statistics.Rd |only man/glue_list_usage_profiles.Rd |only man/glue_put_data_quality_profile_annotation.Rd |only man/glue_search_tables.Rd | 6 man/glue_start_data_quality_rule_recommendation_run.Rd | 4 man/glue_start_job_run.Rd | 13 man/glue_update_table.Rd | 9 man/glue_update_usage_profile.Rd |only man/ivs.Rd | 132 - man/ivs_create_channel.Rd | 48 man/ivs_create_recording_configuration.Rd | 24 man/ivs_import_playback_key_pair.Rd | 6 man/ivs_list_channels.Rd | 12 man/ivs_list_playback_key_pairs.Rd | 8 man/ivs_list_playback_restriction_policies.Rd | 6 man/ivs_list_recording_configurations.Rd | 8 man/ivs_list_stream_keys.Rd | 6 man/ivs_list_stream_sessions.Rd | 6 man/ivs_list_streams.Rd | 6 man/ivs_update_channel.Rd | 42 man/ivs_update_playback_restriction_policy.Rd | 6 man/ivsrealtime.Rd | 126 - man/ivsrealtime_create_encoder_configuration.Rd | 10 man/ivsrealtime_create_participant_token.Rd | 28 man/ivsrealtime_create_stage.Rd | 6 man/ivsrealtime_delete_public_key.Rd |only man/ivsrealtime_disconnect_participant.Rd | 6 man/ivsrealtime_get_participant.Rd | 10 man/ivsrealtime_get_public_key.Rd |only man/ivsrealtime_get_stage_session.Rd | 6 man/ivsrealtime_import_public_key.Rd |only man/ivsrealtime_list_compositions.Rd | 14 man/ivsrealtime_list_encoder_configurations.Rd | 6 man/ivsrealtime_list_participant_events.Rd | 18 man/ivsrealtime_list_participants.Rd | 42 man/ivsrealtime_list_public_keys.Rd |only man/ivsrealtime_list_stage_sessions.Rd | 6 man/ivsrealtime_list_stages.Rd | 6 man/ivsrealtime_list_storage_configurations.Rd | 8 man/ivsrealtime_start_composition.Rd | 8 man/ivsrealtime_update_stage.Rd | 9 man/kinesisanalyticsv2.Rd | 2 man/kinesisanalyticsv2_describe_application_operation.Rd |only man/kinesisanalyticsv2_list_application_operations.Rd |only man/kinesisanalyticsv2_rollback_application.Rd | 2 man/opensearchingestion_get_pipeline.Rd | 2 man/opensearchingestion_get_pipeline_blueprint.Rd | 4 man/opensearchservice_create_domain.Rd | 5 man/opensearchservice_delete_data_source.Rd | 2 man/opensearchservice_update_data_source.Rd | 5 man/opensearchservice_update_domain_config.Rd | 5 man/quicksight.Rd | 7 man/quicksight_batch_create_topic_reviewed_answer.Rd |only man/quicksight_batch_delete_topic_reviewed_answer.Rd |only man/quicksight_describe_key_registration.Rd |only man/quicksight_list_topic_reviewed_answers.Rd |only man/quicksight_register_user.Rd | 11 man/quicksight_update_key_registration.Rd |only man/quicksight_update_user.Rd | 6 tests/testthat/test_glue.R | 24 tests/testthat/test_ivsrealtime.R | 4 195 files changed, 6478 insertions(+), 2648 deletions(-)
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Title: Identify Characteristics of Patients in the OMOP Common Data
Model
Description: Identify the characteristics of patients in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xintong Li [ctb] ,
Xihang Chen [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between PatientProfiles versions 1.1.1 dated 2024-07-28 and 1.2.0 dated 2024-09-11
DESCRIPTION | 14 MD5 | 58 +-- NAMESPACE | 2 NEWS.md | 7 R/addCategories.R | 8 R/addCohortIntersect.R | 16 - R/addConceptIntersect.R | 4 R/addDeath.R | 19 - R/addDemographicsQuery.R | 2 R/addIntersect.R | 24 + R/addObservationPeriodId.R |only R/addTableIntersect.R | 10 R/checks.R | 431 ++------------------------- R/formats.R | 4 R/mockPatientProfiles.R | 20 - R/summariseResult.R | 152 +++++++-- R/sysdata.rda |binary R/utilities.R | 4 inst/doc/cohort-intersect.html | 94 ++--- inst/doc/concept-intersect.html | 115 ++++--- inst/doc/demographics.html | 250 +++++++-------- inst/doc/summarise.html | 251 ++++++++------- inst/doc/table-intersect.html | 86 ++--- man/addObservationPeriodId.Rd |only man/addObservationPeriodIdQuery.Rd |only tests/testthat/test-addCohortIntersect.R | 96 +++--- tests/testthat/test-addConceptIntersect.R | 10 tests/testthat/test-addDeath.R | 26 - tests/testthat/test-addDemographics.R | 208 +++++-------- tests/testthat/test-addObservationPeriodId.R |only tests/testthat/test-checks.R | 21 - tests/testthat/test-summariseResult.R | 63 +++ 32 files changed, 887 insertions(+), 1108 deletions(-)
More information about PatientProfiles at CRAN
Permanent link
Title: Performance Measures for 'mlr3'
Description: Implements multiple performance measures for supervised
learning. Includes over 40 measures for regression and
classification. Additionally, meta information about the performance
measures can be queried, e.g. what the best and worst possible
performances scores are.
Author: Michel Lang [aut] ,
Martin Binder [ctb],
Marc Becker [cre, aut] ,
Lona Koers [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3measures versions 0.6.0 dated 2024-07-20 and 1.0.0 dated 2024-09-11
DESCRIPTION | 28 +++--- MD5 | 188 +++++++++++++++++++++--------------------- NAMESPACE | 3 NEWS.md | 8 + R/bibentries.R | 22 ++++ R/binary_bbrier.R | 10 -- R/binary_fbeta.R | 2 R/binary_fn.R | 2 R/binary_fp.R | 1 R/binary_gmean.R | 2 R/binary_gpr.R | 2 R/binary_prauc.R | 2 R/binary_tn.R | 2 R/binary_tnr.R | 2 R/binary_tp.R | 2 R/binary_tpr.R | 2 R/classif_acc.R | 10 +- R/classif_auc.R | 55 +++++++++++- R/classif_bacc.R | 9 +- R/classif_ce.R | 5 - R/classif_logloss.R | 5 - R/classif_mbrier.R | 7 - R/classif_mcc.R | 7 - R/classif_zero_one.R | 12 +- R/confusion_matrix.R | 13 ++ R/regr_ae.R | 2 R/regr_ape.R | 2 R/regr_bias.R | 5 - R/regr_ktau.R | 4 R/regr_linex.R |only R/regr_mae.R | 5 - R/regr_mape.R | 5 - R/regr_medae.R | 2 R/regr_medse.R | 2 R/regr_mse.R | 5 - R/regr_msle.R | 9 -- R/regr_pbias.R | 5 - R/regr_pinball.R |only R/regr_rae.R | 10 +- R/regr_rmse.R | 5 - R/regr_rmsle.R | 10 +- R/regr_rrse.R | 11 +- R/regr_rse.R | 11 +- R/regr_rsq.R | 10 +- R/regr_se.R | 2 R/regr_smape.R | 5 - man/acc.Rd | 10 +- man/ae.Rd | 11 +- man/ape.Rd | 11 +- man/bacc.Rd | 9 +- man/bbrier.Rd | 10 -- man/bias.Rd | 7 + man/ce.Rd | 5 - man/confusion_matrix.Rd | 13 ++ man/fbeta.Rd | 2 man/fn.Rd | 2 man/fp.Rd | 1 man/gmean.Rd | 2 man/gpr.Rd | 2 man/ktau.Rd | 6 + man/linex.Rd |only man/logloss.Rd | 5 - man/mae.Rd | 7 + man/mape.Rd | 7 + man/mauc_aunu.Rd | 14 ++- man/maxae.Rd | 2 man/maxse.Rd | 2 man/mbrier.Rd | 7 - man/mcc.Rd | 7 - man/measures.Rd | 2 man/medae.Rd | 4 man/medse.Rd | 4 man/mlr3measures-package.Rd | 1 man/mse.Rd | 7 + man/msle.Rd | 8 + man/pbias.Rd | 7 + man/pinball.Rd |only man/prauc.Rd | 2 man/rae.Rd | 11 +- man/rmse.Rd | 7 + man/rmsle.Rd | 7 + man/rrse.Rd | 8 + man/rse.Rd | 8 + man/rsq.Rd | 8 + man/sae.Rd | 2 man/se.Rd | 11 +- man/sle.Rd | 2 man/smape.Rd | 4 man/srho.Rd | 2 man/sse.Rd | 2 man/tn.Rd | 2 man/tnr.Rd | 2 man/tp.Rd | 2 man/tpr.Rd | 2 man/zero_one.Rd | 12 +- tests/testthat/test_classif.R | 5 - tests/testthat/test_regr.R | 6 + 97 files changed, 503 insertions(+), 288 deletions(-)
Title: Internet Memes for Data Analysts
Description: Generates internet memes that optionally include a superimposed inset plot and other atypical features,
combining the visual impact of an attention-grabbing meme with graphic results of data analysis.
The package differs from related packages that focus on imitating and reproducing standard memes.
Some packages do this by interfacing with online meme generators whereas others achieve this natively.
This package takes the latter approach. It does not interface with online meme generators or require any authentication with external websites.
It reads images directly from local files or via URL and meme generation is done by the package.
While this is similar to the 'meme' package available on CRAN, it differs in that the focus is on
allowing for non-standard meme layouts and hybrids of memes mixed with graphs.
While this package can be used to make basic memes like an online meme generator would produce,
it caters primarily to hybrid graph-meme plots where the meme presentation can be se [...truncated...]
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between memery versions 0.5.7 dated 2023-09-10 and 0.6.0 dated 2024-09-11
memery-0.5.7/memery/tests/testthat/test-memery.R |only memery-0.6.0/memery/DESCRIPTION | 18 +- memery-0.6.0/memery/MD5 | 35 ++--- memery-0.6.0/memery/NEWS.md | 5 memery-0.6.0/memery/R/car_shiny.R | 26 ++- memery-0.6.0/memery/R/inset.R | 87 +++++++------ memery-0.6.0/memery/R/meme.R | 151 +++++++++++++---------- memery-0.6.0/memery/R/memery.R | 70 ++++------ memery-0.6.0/memery/R/text.R | 13 + memery-0.6.0/memery/R/zzz.R | 2 memery-0.6.0/memery/inst/WORDLIST | 2 memery-0.6.0/memery/man/car_shiny.Rd | 26 ++- memery-0.6.0/memery/man/inset.Rd | 78 ++++++----- memery-0.6.0/memery/man/meme.Rd | 141 ++++++++++++--------- memery-0.6.0/memery/man/memeApp.Rd | 34 +++-- memery-0.6.0/memery/man/memery.Rd | 35 ++--- memery-0.6.0/memery/man/memetheme.Rd | 3 memery-0.6.0/memery/man/text_position.Rd | 13 + memery-0.6.0/memery/tests/testthat/test-meme.R | 12 + 19 files changed, 425 insertions(+), 326 deletions(-)
Title: Log-Concave Density Estimation in Arbitrary Dimensions
Description: Software for computing a log-concave (maximum likelihood) estimator for independent and identically distributed data in any number of dimensions. For a detailed description of the method see Cule, Samworth and Stewart (2010, Journal of Royal Statistical Society Series B, <doi:10.1111/j.1467-9868.2010.00753.x>).
Author: Madeleine Cule [aut],
Robert Gramacy [aut],
Richard Samworth [aut],
Yining Chen [aut, cre],
Lutz Duembgen [ctb] ,
Vikneswaran Gopal [ctb] ,
George Casella [ctb] ,
C. Bradford Barber [cph] ,
The Geometry Center [cph],
Kai Habel [cph] ,
Raoul Grasman [ [...truncated...]
Maintainer: Yining Chen <y.chen101@lse.ac.uk>
Diff between LogConcDEAD versions 1.6-9 dated 2024-01-09 and 1.6-10 dated 2024-09-11
DESCRIPTION | 12 ++++++------ MD5 | 34 +++++++++++++++++----------------- NEWS | 4 ++-- R/interactive2D.R | 3 +++ build/vignette.rds |binary inst/CITATION | 23 +++++++++++------------ inst/doc/LogConcDEAD.pdf |binary man/LogConcDEAD-package.Rd | 2 +- man/cov.LogConcDEAD.Rd | 4 ++-- man/getinfolcd.Rd | 4 ++-- man/mlelcd.Rd | 8 ++++---- src/convhullnmlc.c | 6 +++--- src/global.c | 2 +- src/mem.c | 3 ++- src/renormalise.c | 14 +++++++------- src/sigmaeffw.c | 14 +++++++------- src/subgradeffw.c | 14 +++++++------- src/useful.c | 4 ++-- 18 files changed, 77 insertions(+), 74 deletions(-)
Title: Official Lego Color Palettes
Description: Provides a dataset containing several color naming conventions established by multiple sources, along with associated color metadata.
The package also provides related helper functions for mapping among the different Lego color naming conventions and between Lego colors, hex colors, and 'R' color names,
making it easy to convert any color palette to one based on existing Lego colors while keeping as close to the original color palette as possible.
The functions use nearest color matching based on Euclidean distance in RGB space.
Naming conventions for color mapping include those from 'BrickLink' (<https://www.bricklink.com>), 'The Lego Group' (<https://www.lego.com>), 'LDraw' (<https://www.ldraw.org/>), and 'Peeron' (<http://www.peeron.com/>).
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between legocolors versions 0.3.1 dated 2021-02-20 and 0.4.0 dated 2024-09-11
legocolors-0.3.1/legocolors/data/legocolors.rda |only legocolors-0.3.1/legocolors/data/legopals.rda |only legocolors-0.3.1/legocolors/man/legocolors-package.Rd |only legocolors-0.3.1/legocolors/man/legopals.Rd |only legocolors-0.4.0/legocolors/DESCRIPTION | 16 - legocolors-0.4.0/legocolors/MD5 | 32 +- legocolors-0.4.0/legocolors/NEWS.md | 13 legocolors-0.4.0/legocolors/R/data.R | 6 legocolors-0.4.0/legocolors/R/legocolors.R | 24 - legocolors-0.4.0/legocolors/R/mapping.R | 58 ++- legocolors-0.4.0/legocolors/R/palettes.R | 2 legocolors-0.4.0/legocolors/README.md | 75 ++-- legocolors-0.4.0/legocolors/data/legoCols.rda |only legocolors-0.4.0/legocolors/data/legoPals.rda |only legocolors-0.4.0/legocolors/inst/WORDLIST | 11 legocolors-0.4.0/legocolors/man/lc_palettes.Rd | 68 ++-- legocolors-0.4.0/legocolors/man/legoCols.Rd |only legocolors-0.4.0/legocolors/man/legoPals.Rd |only legocolors-0.4.0/legocolors/man/legocolor.Rd | 214 +++++++------- legocolors-0.4.0/legocolors/man/legocolors.Rd | 40 +- legocolors-0.4.0/legocolors/tests/testthat/test-mapping.R | 2 21 files changed, 294 insertions(+), 267 deletions(-)
Title: LCARS Aesthetic for Shiny
Description: Provides Shiny widgets and theme that support a 'Library Computer Access/Retrieval System' (LCARS) aesthetic for Shiny apps.
The package also includes functions for adding a minimal LCARS theme to static 'ggplot2' graphs.
More details about LCARS can be found at <https://en.wikipedia.org/wiki/LCARS>.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between lcars versions 0.3.8 dated 2023-09-10 and 0.4.0 dated 2024-09-11
DESCRIPTION | 12 +++---- MD5 | 82 +++++++++++++++++++++++++-------------------------- NEWS.md | 4 ++ R/data.R | 3 + R/lcars.R | 14 -------- R/plot.R | 12 +++---- R/shapes.R | 28 ++++++++--------- R/shiny-box.R | 62 ++++++++++++++++++-------------------- R/shiny-button.R | 25 ++++++--------- R/shiny-checkbox.R | 9 ++--- R/shiny-radio.R | 27 ++++++++-------- R/shiny-rect.R | 15 ++++----- R/shiny-render.R | 13 +++----- R/shiny-sweep.R | 15 ++++----- R/shiny-toggle.R | 24 ++++++-------- R/shiny.R | 38 ++++++++++------------- README.md | 54 ++++++++++++++++++--------------- build/vignette.rds |binary inst/WORDLIST | 3 + inst/doc/lcars.R | 2 - inst/doc/lcars.Rmd | 12 +++---- inst/doc/lcars.html | 37 +++++++++++------------ man/inputColumn.Rd | 13 +++----- man/lcars.Rd | 41 ++++++++++++++----------- man/lcarsApp.Rd | 4 +- man/lcarsBox.Rd | 50 ++++++++++++++----------------- man/lcarsButton.Rd | 11 +++--- man/lcarsCheckbox.Rd | 7 +--- man/lcarsHeader.Rd | 9 ++--- man/lcarsOutput.Rd | 4 +- man/lcarsPage.Rd | 23 ++++++-------- man/lcarsRadio.Rd | 26 +++++++--------- man/lcarsRect.Rd | 7 +--- man/lcarsSweep.Rd | 13 +++----- man/lcarsToggle.Rd | 16 ++++----- man/lcars_border.Rd | 4 +- man/lcars_elbow.Rd | 7 +--- man/lcars_pill.Rd | 11 +++--- man/lcars_rect.Rd | 4 +- man/lcarsdata.Rd | 3 + man/renderLcars.Rd | 5 +-- vignettes/lcars.Rmd | 12 +++---- 42 files changed, 368 insertions(+), 393 deletions(-)
Title: Create Color Palettes from Images
Description: Provides ability to create color palettes from image files. It
offers control over the type of color palette to derive from an image
(qualitative, sequential or divergent) and other palette properties.
Quantiles of an image color distribution can be trimmed. Near-black or
near-white colors can be trimmed in RGB color space independent of trimming
brightness or saturation distributions in HSV color space. Creating
sequential palettes also offers control over the order of HSV color
dimensions to sort by. This package differs from other related packages
like 'RImagePalette' in approaches to quantizing and extracting colors in
images to assemble color palettes and the level of user control over
palettes construction.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between imgpalr versions 0.3.2 dated 2023-09-09 and 0.4.0 dated 2024-09-11
DESCRIPTION | 12 +++--- MD5 | 22 +++++------ NEWS.md | 4 ++ R/imgpalr.R | 12 ------ R/load.R | 8 ++-- R/pal.R | 92 ++++++++++++++++++++++++++++++++------------------ R/quantize.R | 39 ++++++++++++--------- README.md | 53 +++++++++++++++++++--------- man/image_load.Rd | 8 ++-- man/image_pal.Rd | 92 ++++++++++++++++++++++++++++++++------------------ man/image_quantmap.Rd | 35 +++++++++++-------- man/imgpalr.Rd | 38 +++++++++++++------- 12 files changed, 255 insertions(+), 160 deletions(-)
Title: Signal Processing
Description: R implementation of the 'Octave' package 'signal', containing
a variety of signal processing tools, such as signal generation and
measurement, correlation and convolution, filtering, filter design,
filter analysis and conversion, power spectrum analysis, system
identification, decimation and sample rate change, and windowing.
Author: Geert van Boxtel [aut, cre] ,
Tom Short [aut] ,
Paul Kienzle [aut] ,
Ben Abbott [ctb],
Juan Aguado [ctb],
Muthiah Annamalai [ctb],
Leonardo Araujo [ctb],
William Asquith [ctb],
David Bateman [ctb],
David Billinghurst [ctb],
Juan Pablo Carbajal [ctb], [...truncated...]
Maintainer: Geert van Boxtel <G.J.M.vanBoxtel@gmail.com>
Diff between gsignal versions 0.3-6 dated 2024-09-04 and 0.3-7 dated 2024-09-11
gsignal-0.3-6/gsignal/tests/testthat/testthat-problems.rds |only gsignal-0.3-7/gsignal/DESCRIPTION | 8 - gsignal-0.3-7/gsignal/MD5 | 15 +- gsignal-0.3-7/gsignal/NEWS.md | 6 + gsignal-0.3-7/gsignal/R/findpeaks.R | 59 ++++++---- gsignal-0.3-7/gsignal/README.md | 4 gsignal-0.3-7/gsignal/inst/doc/gsignal.html | 14 +- gsignal-0.3-7/gsignal/tests/testthat/test_Filter_Analysis_Functions.R | 2 gsignal-0.3-7/gsignal/tests/testthat/test_Signal_Measurement.R | 2 9 files changed, 65 insertions(+), 45 deletions(-)
Title: Read EPUB File Metadata and Text
Description: Provides functions supporting the reading and parsing of internal e-book content from EPUB files.
The 'epubr' package provides functions supporting the reading and parsing of internal e-book content from EPUB files.
E-book metadata and text content are parsed separately and joined together in a tidy, nested tibble data frame.
E-book formatting is not completely standardized across all literature.
It can be challenging to curate parsed e-book content across an arbitrary collection of e-books
perfectly and in completely general form, to yield a singular, consistently formatted output.
Many EPUB files do not even contain all the same pieces of information in their respective metadata.
EPUB file parsing functionality in this package is intended for relatively general application to arbitrary EPUB e-books.
However, poorly formatted e-books or e-books with highly uncommon formatting may not work with this package.
There may even be cases where an EPUB file has DRM or some other property that [...truncated...]
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between epubr versions 0.6.4 dated 2023-09-09 and 0.6.5 dated 2024-09-11
DESCRIPTION | 14 +++++++------- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/epubr.R | 21 +-------------------- README.md | 9 ++++++--- build/vignette.rds |binary inst/WORDLIST | 1 + inst/doc/epubr.html | 2 +- man/epubr.Rd | 49 +++++++++++++++++++++++++------------------------ 9 files changed, 53 insertions(+), 63 deletions(-)
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'DDIwR', 'QCA' and 'venn'.
Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts
information (set names, set values) from those expressions. Other functions
perform various other checks if possibly numeric (even if all numbers reside
in a character vector) and coerce to numeric, or check if the numbers are
whole. It also offers, among many others, a highly versatile recoding
routine and some more flexible alternatives to the base functions 'with()'
and 'within()'.
SOP simplification functions in this package use related minimization from
package 'QCA', which is recommended to be installed despite not being listed
in the Imports field, due to circular dependency issues.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.35 dated 2024-03-11 and 0.36 dated 2024-09-11
admisc-0.35/admisc/R/unlockEnvironment.R |only admisc-0.36/admisc/DESCRIPTION | 6 admisc-0.36/admisc/MD5 | 143 +++++----- admisc-0.36/admisc/NAMESPACE | 3 admisc-0.36/admisc/R/asNumeric.R | 41 -- admisc-0.36/admisc/R/asSOP.R | 30 -- admisc-0.36/admisc/R/betweenQuotes.R |only admisc-0.36/admisc/R/brackets.R | 93 ++++-- admisc-0.36/admisc/R/change.R | 54 +-- admisc-0.36/admisc/R/checkMV.R | 52 +-- admisc-0.36/admisc/R/checkSubset.R | 26 - admisc-0.36/admisc/R/checkValid.R | 33 -- admisc-0.36/admisc/R/classify.R | 26 - admisc-0.36/admisc/R/coerceMode.R | 33 -- admisc-0.36/admisc/R/combnk.R | 55 +-- admisc-0.36/admisc/R/compute.R | 74 +++-- admisc-0.36/admisc/R/dimnames.R | 46 --- admisc-0.36/admisc/R/equality.R | 42 +- admisc-0.36/admisc/R/expand.R | 87 ++++-- admisc-0.36/admisc/R/export.R | 35 -- admisc-0.36/admisc/R/factorize.R | 141 ++++++++- admisc-0.36/admisc/R/finvert.R | 41 -- admisc-0.36/admisc/R/frelevel.R | 54 +-- admisc-0.36/admisc/R/getInfo.R | 241 ++++++++--------- admisc-0.36/admisc/R/getLevels.R | 107 +++---- admisc-0.36/admisc/R/getMatrix.R | 35 -- admisc-0.36/admisc/R/getName.R | 65 ++-- admisc-0.36/admisc/R/hclr.R | 26 - admisc-0.36/admisc/R/inside.R | 44 +-- admisc-0.36/admisc/R/intersection.R | 89 ++++-- admisc-0.36/admisc/R/invert.R | 80 +++-- admisc-0.36/admisc/R/listRDA.R | 26 - admisc-0.36/admisc/R/mvSOP.R | 48 +-- admisc-0.36/admisc/R/negate.R | 90 ++++-- admisc-0.36/admisc/R/numdec.R | 72 ++--- admisc-0.36/admisc/R/objRDA.R | 26 - admisc-0.36/admisc/R/onLoad.R | 27 - admisc-0.36/admisc/R/overwrite.R | 27 - admisc-0.36/admisc/R/pad.R | 29 -- admisc-0.36/admisc/R/permutations.R | 48 --- admisc-0.36/admisc/R/possibleNumeric.R | 64 +--- admisc-0.36/admisc/R/prettyString.R | 43 +-- admisc-0.36/admisc/R/prettyTable.R | 38 -- admisc-0.36/admisc/R/print.R | 99 +++++-- admisc-0.36/admisc/R/recode.R | 184 +++++++++---- admisc-0.36/admisc/R/recreate.R | 103 +++++-- admisc-0.36/admisc/R/reload.R | 29 -- admisc-0.36/admisc/R/replaceText.R | 79 +++-- admisc-0.36/admisc/R/scan.clipboard.R | 29 -- admisc-0.36/admisc/R/simplify.R | 60 ++-- admisc-0.36/admisc/R/sortExpressions.R | 58 +--- admisc-0.36/admisc/R/stopError.R | 31 -- admisc-0.36/admisc/R/string.R | 178 ++++++++++-- admisc-0.36/admisc/R/tagged.R | 37 -- admisc-0.36/admisc/R/tilde.R | 32 -- admisc-0.36/admisc/R/translate.R | 201 ++++++++++++-- admisc-0.36/admisc/R/tryCatchWEM.R | 29 -- admisc-0.36/admisc/R/unicode.R | 33 -- admisc-0.36/admisc/R/uninstall.R | 26 - admisc-0.36/admisc/R/unload.R | 30 -- admisc-0.36/admisc/R/using.R | 133 +++++++-- admisc-0.36/admisc/R/validateNames.R | 55 +-- admisc-0.36/admisc/R/verify.R | 38 -- admisc-0.36/admisc/R/wholeNumeric.R | 38 -- admisc-0.36/admisc/R/write.clipboard.R | 27 - admisc-0.36/admisc/R/writePrimeimp.R | 38 -- admisc-0.36/admisc/build/partial.rdb |binary admisc-0.36/admisc/inst/ChangeLog | 424 +++++++++++++++--------------- admisc-0.36/admisc/man/admisc_internal.Rd | 2 admisc-0.36/admisc/man/admisc_package.Rd | 4 admisc-0.36/admisc/man/betweenQuotes.Rd |only admisc-0.36/admisc/man/brackets.Rd | 15 - admisc-0.36/admisc/man/recode.Rd | 12 admisc-0.36/admisc/src/admisc.c | 63 +--- 74 files changed, 2210 insertions(+), 2217 deletions(-)
Title: Scientific Analysis of Trial Errors (SATE)
Description: Bundles functions used to analyze the harmfulness of trial errors in criminal trials.
Functions in the Scientific Analysis of Trial Errors ('SATE') package help users estimate the
probability that a jury will find a defendant guilty given jurors' preferences for a guilty
verdict and the uncertainty of that estimate. Users can also compare actual and hypothetical
trial conditions to conduct harmful error analysis. The relationship between individual jurors'
verdict preferences and the probability that a jury returns a guilty verdict has been studied
by Davis (1973) <doi:10.1037/h0033951>; MacCoun & Kerr (1988) <doi:10.1037/0022-3514.54.1.21>,
and Devine et el. (2001) <doi:10.1037/1076-8971.7.3.622>, among others.
Author: Barry Edwards [aut, cre]
Maintainer: Barry Edwards <barry.edwards@ucf.edu>
Diff between sate versions 2.1.0 dated 2023-12-20 and 2.2.0 dated 2024-09-11
DESCRIPTION | 13 ++++++------ MD5 | 32 +++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 18 ++++++++++++++++ R/as.jury.point.r | 7 +++--- R/as.jury.stats.r | 8 ++++--- R/compare.jury.stats.r | 28 +++++++++++++++++--------- R/get_pG_by_k.r |only R/graph.effect.defendant.r | 28 ++++++++++++++++++-------- R/graph.estimate.r | 1 R/helper.functions.r | 48 +++++++++++++++++++++++++++++---------------- R/select.with.strikes.r | 3 +- R/sim.as.jury.stats.r | 23 +++++++++++++++------ R/sim.compare.jury.stats.r | 11 ++++++---- man/as.jury.point.Rd | 6 ++--- man/compare.jury.stats.Rd | 17 +++++++++++---- man/get_pG_by_k.Rd |only man/select.with.strikes.Rd | 3 +- 18 files changed, 166 insertions(+), 81 deletions(-)
Title: Resampling Algorithms for 'mlr3' Framework
Description: A supervised learning algorithm inputs a train set,
and outputs a prediction function, which can be used on a test set.
If each data point belongs to a group
(such as geographic region, year, etc), then
how do we know if it is possible to train on one group, and predict
accurately on another group? Cross-validation can be used to determine
the extent to which this is possible, by first assigning fold IDs from
1 to K to all data (possibly using stratification, usually by group
and label). Then we loop over test sets (group/fold combinations),
train sets (same group, other groups, all groups), and compute
test/prediction accuracy for each combination. Comparing
test/prediction accuracy between same and other, we can determine the
extent to which it is possible (perfect if same/other have similar
test accuracy for each group; other is usually somewhat less accurate
than same; other can be just as bad as featureless baseline when the
groups have different patterns).
For more information,
[...truncated...]
Author: Toby Hocking [aut, cre] ,
Michel Lang [ctb] ,
Bernd Bischl [ctb] ,
Jakob Richter [ctb] ,
Patrick Schratz [ctb] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [ctb],
Florian Pfisterer [ctb] ,
Raphael Sonabend [ctb] , [...truncated...]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between mlr3resampling versions 2024.7.7 dated 2024-07-12 and 2024.9.6 dated 2024-09-11
DESCRIPTION | 6 MD5 | 50 NAMESPACE | 8 NEWS | 156 R/ResamplingBase.R | 166 R/ResamplingSameOtherCV.R | 244 R/ResamplingSameOtherSizesCV.R | 350 R/ResamplingVariableSizeTrainCV.R | 190 R/score.R | 28 R/zzz.R | 34 build/vignette.rds |binary inst/doc/Newer_resamplers.R | 1053 - inst/doc/Newer_resamplers.Rmd | 1618 +- inst/doc/Newer_resamplers.html | 3740 ++--- inst/doc/Older_resamplers.R | 1893 +- inst/doc/Older_resamplers.Rmd | 2837 +-- inst/doc/Older_resamplers.html |24920 +++++++++++++++++------------------ man/AZtrees.Rd | 120 man/ResamplingSameOtherCV.Rd | 336 man/ResamplingSameOtherSizesCV.Rd | 412 man/ResamplingVariableSizeTrainCV.Rd | 310 man/score.Rd | 150 tests/testthat.R | 4 tests/testthat/test-CRAN.R | 784 - vignettes/Newer_resamplers.Rmd | 1618 +- vignettes/Older_resamplers.Rmd | 2837 +-- 26 files changed, 21935 insertions(+), 21929 deletions(-)
More information about mlr3resampling at CRAN
Permanent link
Title: 'R' Bindings for 'TMB'
Description: Native 'R' interface to 'TMB' (Template Model Builder) so models can be written entirely in 'R' rather than 'C++'. Automatic differentiation, to any order, is available for a rich subset of 'R' features, including linear algebra for dense and sparse matrices, complex arithmetic, Fast Fourier Transform, probability distributions and special functions. 'RTMB' provides easy access to model fitting and validation following the principles of Kristensen, K., Nielsen, A., Berg, C. W., Skaug, H., & Bell, B. M. (2016) <DOI:10.18637/jss.v070.i05> and Thygesen, U.H., Albertsen, C.M., Berg, C.W. et al. (2017) <DOI:10.1007/s10651-017-0372-4>.
Author: Kasper Kristensen [aut, cre]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between RTMB versions 1.5 dated 2024-04-23 and 1.6 dated 2024-09-11
DESCRIPTION | 11 +-- MD5 | 65 +++++++++++---------- NAMESPACE | 16 ++++- R/00roxygen.R | 8 +- R/RcppExports.R | 8 ++ R/adcomplex.R | 91 ++++++++++++++++++++++++++++- R/adjoint.R | 59 ++++++++++++++----- R/advector.R | 123 +++++++++++++++++++++++++++++++--------- R/chol.R |only R/determinant.R |only R/eigen.R |only R/interpol.R | 8 ++ R/methods.R | 32 +++++----- R/osa.R | 17 +---- R/sim.R | 17 +---- inst/doc/RTMB-advanced.html | 6 - inst/doc/RTMB-introduction.R | 26 ++++++++ inst/doc/RTMB-introduction.html | 39 +++++++++++- inst/doc/RTMB-introduction.rmd | 38 ++++++++++++ inst/tinytest/test-advector.R |only inst/tinytest/test-factorize.R |only man/AD.Rd |only man/ADcomplex.Rd | 77 +++++++++++++++++++++++++ man/ADjoint.Rd | 36 ++++++++--- man/ADmatrix.Rd | 68 +++++++++++++++++++--- man/ADvector.Rd | 31 ++++++---- man/Interpolation.Rd | 8 ++ man/RTMB-package.Rd | 9 -- man/TMB-interface.Rd | 11 +++ src/Makevars | 1 src/Makevars.win | 2 src/RTMB_tape.cpp | 6 + src/RcppExports.cpp | 26 ++++++++ src/lapack.cpp |only src/math.cpp | 17 +++++ src/misc.cpp | 28 +++++++-- vignettes/RTMB-introduction.rmd | 38 ++++++++++++ 37 files changed, 750 insertions(+), 172 deletions(-)
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and
high-performance 2D drawing library. The 'ragg' package provides a set
of graphic devices based on AGG to use as alternative to the raster
devices provided through the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut]
,
Maxim Shemanarev [aut, cph] ,
Tony Juricic [ctb, cph] ,
Milan Marusinec [ctb, cph] ,
Spencer Garrett [ctb] ,
Posit, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ragg versions 1.3.2 dated 2024-05-15 and 1.3.3 dated 2024-09-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 38 +++++++++++++++++++++----------------- src/agg/src/agg_font_freetype.cpp | 2 +- 4 files changed, 28 insertions(+), 24 deletions(-)
More information about NeuralEstimators at CRAN
Permanent link
Title: Data Operator
Description: Flexibly convert data between long and wide format using just two
functions: reshape_toLong() and reshape_toWide().
Author: Jing Zhang [aut, cre],
Zhi Jin [aut],
CRAN Team [ctb]
Maintainer: Jing Zhang <zj391120@163.com>
Diff between do versions 2.0.0.0 dated 2021-08-03 and 2.0.0.1 dated 2024-09-11
DESCRIPTION | 20 +- MD5 | 9 NAMESPACE | 2 R/zzz.R |only build/vignette.rds |binary inst/doc/version-update.html | 403 ++++++++++++++++++++++++++++++++----------- 6 files changed, 322 insertions(+), 112 deletions(-)
Title: Functions and Data for the Book 'Applied Hierarchical Modeling
in Ecology' Vols 1 and 2
Description: Provides functions to simulate data sets from hierarchical ecological models, including all the simulations described in the two volume publication 'Applied Hierarchical Modeling in Ecology: Analysis of distribution, abundance and species richness in R and BUGS' by Marc Kéry and Andy Royle: volume 1 (2016, ISBN: 978-0-12-801378-6) and volume 2 (2021, ISBN: 978-0-12-809585-0), <https://www.mbr-pwrc.usgs.gov/pubanalysis/keryroylebook/>. It also has all the utility functions and data sets needed to replicate the analyses shown in the books.
Author: Marc Kery [aut],
Andy Royle [aut],
Mike Meredith [aut],
Ken Kellner [ctb, cre] ,
Urs Breitenmoser [dtc] ,
Richard Chandler [ctb],
Bob Dorazio [ctb],
Evan Grant [dtc] ,
John-Andren Henden [dtc] ,
Roland Kays [dtc] ,
David King [dtc] ,
Xavier Lambin [d [...truncated...]
Maintainer: Ken Kellner <contact@kenkellner.com>
Diff between AHMbook versions 0.2.9 dated 2023-08-23 and 0.2.10 dated 2024-09-11
DESCRIPTION | 17 +- MD5 | 60 +++++----- NAMESPACE | 13 -- NEWS | 10 + R/bigCrossCorr.R | 3 R/checkNamespace.R |only R/draw_circle.R |only R/playRN_AHM1_6-13-1_Simulate_Royle-Nichols_model.R | 2 R/plot-Nmix-resi&map-Nmix-resi_AHM1_6-9-3_plotting.R | 4 R/simCJS_AHM2_3-2-2.R | 9 + R/simComm_AHM1_11-2_Simulate_community_data.R | 15 +- R/simDSM.R | 5 R/simDataDK1_21--.R | 53 ++++---- R/simDataDK_AHM2_10.R | 31 ++--- R/simDynoccSpatial_AHM2_9.R | 31 +++-- R/simExpCorrRF.R | 10 + R/simHDS_AHM1_8-5-1_Simulate_hierarch_distance_sampling.R | 2 R/simHDSg_AHM1_9-2-1_Simulate_hierarch_distance_sampling_groups.R | 2 R/simHDSpoint.R | 2 R/simHDStr.R | 1 R/simNmixSpatial_AHM2_9.R | 3 R/simOccSpatial_AHM2_9.R | 3 R/simPPe_AHM2_10.R | 14 +- R/simPdata_AHM1_8-2-5-1_Simulate_point_transect_data.R | 2 R/simSpatialDS_AHM1_9-8-3_Simulate_spatial_DS.R | 5 R/simSpatialDSline_AHM2_11-5.R | 7 - R/simSpatialDSte.R | 5 R/simSpatialHDS.R | 7 - inst/RandomFieldsSupport/simDynoccSpatial.R | 29 ++-- inst/RandomFieldsSupport/simExpCorrRF.R | 9 + inst/RandomFieldsSupport/simPPe.R | 13 +- man/simDataDK.Rd | 2 32 files changed, 221 insertions(+), 148 deletions(-)
Title: Markov Models for Health Economic Evaluations
Description: An implementation of the modelling and reporting features described
in reference textbook and guidelines (Briggs, Andrew, et al. Decision
Modelling for Health Economic Evaluation. Oxford Univ. Press, 2011;
Siebert, U. et al. State-Transition Modeling. Medical Decision Making
32, 690-700 (2012).): deterministic and probabilistic sensitivity analysis,
heterogeneity analysis, time dependency on state-time and model-time
(semi-Markov and non-homogeneous Markov models), etc.
Author: Kevin Zarca [aut, cre],
Antoine Filipovic-Pierucci [aut],
Matthew Wiener [ctb],
Zdenek Kabat [ctb],
Vojtech Filipec [ctb],
Jordan Amdahl [ctb],
Yonatan Carranza Alarcon [ctb],
Vince Daniels [ctb]
Maintainer: Kevin Zarca <kevin.zarca@gmail.com>
Diff between heemod versions 1.0.1 dated 2024-01-31 and 1.0.2 dated 2024-09-11
DESCRIPTION | 8 +- MD5 | 62 ++++++++-------- NEWS.md | 2 R/gho_mortality.R | 4 + R/survival_define.R | 2 R/sysdata.rda |binary R/utils.R | 6 + README.md | 67 +++++++++--------- build/vignette.rds |binary inst/doc/a_introduction.R | 8 +- inst/doc/a_introduction.html | 10 +- inst/doc/b_time_dependency.R | 2 inst/doc/b_time_dependency.html | 4 - inst/doc/c_homogeneous.R | 12 +-- inst/doc/c_homogeneous.html | 14 +-- inst/doc/d_non_homogeneous.R | 6 - inst/doc/d_non_homogeneous.html | 8 +- inst/doc/e_probabilistic.R | 4 - inst/doc/e_probabilistic.html | 4 - inst/doc/f_sensitivity.R | 12 +-- inst/doc/f_sensitivity.html | 16 ++-- inst/doc/g_heterogeneity.R | 14 +-- inst/doc/g_heterogeneity.html | 146 ++++++++++++++++++++-------------------- inst/doc/h_tabular.R | 4 - inst/doc/h_tabular.html | 8 +- inst/doc/i_reproduction.R | 2 inst/doc/i_reproduction.html | 4 - inst/doc/j_survival.html | 18 ++-- inst/doc/j_survival_2_psa.html | 12 +-- inst/doc/k_calibration.R | 4 - inst/doc/k_calibration.html | 4 - tests/testthat/Rplots.pdf |binary 32 files changed, 239 insertions(+), 228 deletions(-)
Title: Simple Blinding Index for Randomized Controlled Trials
Description: Computes a simple blinding index for randomized controlled trials introduced in the paper "A simple blinding index for randomized controlled trials" by Petroff, Bacak, Dagres, Dilk and Wachter, which has been submitted for publication.
Author: David Petroff [aut, cre, cph],
Miroslav Bacak [aut, cph]
Maintainer: David Petroff <david.petroff@zks.uni-leipzig.de>
Diff between SBI versions 0.1.0 dated 2024-04-11 and 0.1.1 dated 2024-09-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/sbi.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Ecological Drift under the UNTB
Description: Hubbell's Unified Neutral Theory of Biodiversity.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between untb versions 1.7-7 dated 2023-08-19 and 1.7-7-1 dated 2024-09-11
untb-1.7-7-1/untb/DESCRIPTION | 11 ++- untb-1.7-7-1/untb/MD5 | 45 ++++++------- untb-1.7-7-1/untb/NAMESPACE | 4 - untb-1.7-7-1/untb/R/sysdata.rda |binary untb-1.7-7-1/untb/R/untb.R | 4 - untb-1.7-7-1/untb/build/vignette.rds |binary untb-1.7-7-1/untb/data/butterflies.rda |binary untb-1.7-7-1/untb/data/caruso.rda |binary untb-1.7-7-1/untb/data/copepod.rda |binary untb-1.7-7-1/untb/data/ghats.rda |binary untb-1.7-7-1/untb/data/ostracod.rda |binary untb-1.7-7-1/untb/data/sahfos.rda |binary untb-1.7-7-1/untb/data/saunders.rda |binary untb-1.7-7-1/untb/data/spitale.rda |binary untb-1.7-7-1/untb/inst/doc/untb.pdf |binary untb-1.7-7-1/untb/man/census.Rd | 10 +- untb-1.7-7-1/untb/man/count.Rd | 17 ++-- untb-1.7-7-1/untb/man/logkda.Rd | 19 ++--- untb-1.7-7-1/untb/man/plus.Rd | 8 -- untb-1.7-7-1/untb/tests |only untb-1.7-7/untb/man/figures/README-prestonplotsahfos-1.png |only untb-1.7-7/untb/man/figures/README-prestonplotsahfos-2.png |only untb-1.7-7/untb/man/figures/README-unnamed-chunk-4-1.png |only untb-1.7-7/untb/man/figures/README-unnamed-chunk-4-2.png |only 24 files changed, 60 insertions(+), 58 deletions(-)
Title: Modern Database Engine for Complex Data Based on
Multi-Dimensional Arrays
Description: The modern database 'TileDB' introduces a powerful on-disk
format for storing and accessing any complex data based on multi-dimensional
arrays. It supports dense and sparse arrays, dataframes and key-values stores,
cloud storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression,
encryption and checksum filters, uses a fully multi-threaded implementation,
supports parallel I/O, data versioning ('time travel'), metadata and groups.
It is implemented as an embeddable cross-platform C++ library with APIs from
several languages, and integrations. This package provides the R support.
Author: TileDB, Inc. [aut, cph],
Dirk Eddelbuettel [cre]
Maintainer: Dirk Eddelbuettel <dirk@tiledb.com>
Diff between tiledb versions 0.29.0 dated 2024-07-25 and 0.30.0 dated 2024-09-11
DESCRIPTION | 6 - MD5 | 51 +++++++------- NAMESPACE | 3 NEWS.md | 33 +++++++++ R/ArraySchema.R | 4 - R/ArraySchemaEvolution.R | 2 R/CurrentDomain.R | 10 -- R/NDRectangle.R | 80 +++++++++++++++++++--- R/RcppExports.R | 12 +++ R/TileDBArray.R | 74 +++----------------- README.md | 2 inst/tinytest/test_arrayschema.R | 2 inst/tinytest/test_arrayschemaevolution.R | 2 inst/tinytest/test_currentdomain.R | 2 inst/tinytest/test_ndrectangle.R | 66 ++++++++++++------ man/tiledb_array-class.Rd | 6 - man/tiledb_array.Rd | 18 +---- man/tiledb_current_domain-class.Rd | 2 man/tiledb_ndrectangle-class.Rd | 2 man/tiledb_ndrectangle_datatype.Rd |only man/tiledb_ndrectangle_datatype_by_ind.Rd |only man/tiledb_ndrectangle_dim_num.Rd |only man/tiledb_ndrectangle_get_range.Rd | 2 man/tiledb_ndrectangle_set_range.Rd | 2 src/RcppExports.cpp | 38 ++++++++++ src/libtiledb.cpp | 107 ++++++++++++++++++++++++++++-- src/libtiledb.h | 45 +++++++++++- tools/tiledbVersion.txt | 4 - 28 files changed, 403 insertions(+), 172 deletions(-)
Title: Dimension Reduction, Regression and Discrimination for
Chemometrics
Description: Data exploration and prediction with focus on high dimensional data and chemometrics.
The package was initially designed about partial least squares regression and discrimination models and variants, in particular locally weighted PLS models (LWPLS). Then, it has been expanded to many other methods for analyzing high dimensional data.
The name 'rchemo' comes from the fact that the package is orientated to chemometrics, but most of the provided methods are fully generic to other domains.
Functions such as transform(), predict(), coef() and summary() are available. Tuning the predictive models is facilitated by generic functions gridscore() (validation dataset) and gridcv() (cross-validation). Faster versions are also available for models based on latent variables (LVs) (gridscorelv() and gridcvlv()) and ridge regularization (gridscorelb() and gridcvlb()).
Author: Marion Brandolini-Bunlon [aut, cre],
Benoit Jaillais [aut],
Jean-Michel Roger [aut],
Matthieu Lesnoff [aut]
Maintainer: Marion Brandolini-Bunlon <marion.brandolini-bunlon@inrae.fr>
Diff between rchemo versions 0.1-2 dated 2024-06-05 and 0.1-3 dated 2024-09-11
DESCRIPTION | 9 + MD5 | 48 +++++----- NAMESPACE | 1 R/gridcv.R | 6 - R/gridscore.R | 12 +- R/mbplsr_mbplsda_allsteps.R |only R/onAttach.r | 2 R/plsr_plsda_allsteps.R |only R/soplsprobdacv.R | 178 ++++++++++++++------------------------- R/soplsr_soplsda_allsteps.R |only R/soplsrcv.R | 173 ++++++++++++++------------------------ R/soplsrdacv.R | 181 +++++++++++++++------------------------- inst/NEWS.md | 7 + inst/rchemo_functions_github.md | 6 + man/dtagg.Rd | 4 man/getknn.Rd | 6 - man/interpl.Rd | 6 - man/mbplsda.Rd | 6 + man/mbplsr.Rd | 6 + man/mbplsr_mbplsda_allsteps.Rd |only man/plsda.Rd | 6 + man/plsr.Rd | 6 + man/plsr_plsda_allsteps.Rd |only man/savgol.Rd | 11 +- man/soplsda.Rd | 7 + man/soplsr.Rd | 5 + man/soplsr_soplsda_allsteps.Rd |only man/svm.Rd | 12 +- 28 files changed, 313 insertions(+), 385 deletions(-)
Title: Highly Performant String Case Converter
Description: Provides a case conversion between common cases like CamelCase and
snake_case. Using the 'rust crate heck' <https://github.com/withoutboats/heck>
as the backend for a highly performant case conversion for 'R'.
Author: Josiah Parry [aut] ,
Dyfan Jones [cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between heck versions 0.1.2 dated 2024-09-04 and 0.1.3 dated 2024-09-11
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- NEWS.md | 9 +++++++++ configure | 21 ++------------------- configure.win | 17 ++--------------- src/Makevars.win | 7 ------- src/rust/Cargo.lock | 28 ++++++++++++++-------------- src/rust/Cargo.toml | 2 +- src/rust/vendor.tar.xz |binary tools |only 10 files changed, 41 insertions(+), 68 deletions(-)
Title: Constructing Hierarchical Voronoi Tessellations and Overlay
Heatmaps for Data Analysis
Description: Facilitates building topology preserving maps for rich multivariate data.
Credits to Mu Sigma for their continuous support throughout the development of the package.
Author: Zubin Dowlaty [aut],
Mu Sigma, Inc. [cre]
Maintainer: "Mu Sigma, Inc." <ird.experiencelab@mu-sigma.com>
Diff between HVT versions 24.5.2 dated 2024-05-15 and 24.9.1 dated 2024-09-11
HVT-24.5.2/HVT/vignettes/hvt_result_diag.png |only HVT-24.5.2/HVT/vignettes/hvt_results_list.png |only HVT-24.5.2/HVT/vignettes/hvt_results_list_score.png |only HVT-24.5.2/HVT/vignettes/quant_explainer.png |only HVT-24.5.2/HVT/vignettes/reference.png |only HVT-24.5.2/HVT/vignettes/sample_dataset |only HVT-24.5.2/HVT/vignettes/scoreLayeredHVT_function_mapA.png |only HVT-24.5.2/HVT/vignettes/scoreLayeredHVT_function_mapB.png |only HVT-24.5.2/HVT/vignettes/scoreLayeredHVT_function_mapC.png |only HVT-24.9.1/HVT/DESCRIPTION | 22 HVT-24.9.1/HVT/MD5 | 64 - HVT-24.9.1/HVT/NAMESPACE | 5 HVT-24.9.1/HVT/R/clustHVT.R |only HVT-24.9.1/HVT/R/clusterPlot.R |only HVT-24.9.1/HVT/R/diagPlot.R | 2 HVT-24.9.1/HVT/R/displayTable.R | 136 ++- HVT-24.9.1/HVT/R/edaPlots.R | 222 +++-- HVT-24.9.1/HVT/R/getCentroids.R | 62 + HVT-24.9.1/HVT/R/getCentroids_for_opti.R | 33 HVT-24.9.1/HVT/R/global.R | 4 HVT-24.9.1/HVT/R/hvq.R | 34 HVT-24.9.1/HVT/R/madPlot.R | 5 HVT-24.9.1/HVT/R/plotHVT.R | 318 +++----- HVT-24.9.1/HVT/R/plotModelDiagnostics.R | 2 HVT-24.9.1/HVT/R/scoreHVT.R | 312 ++++++-- HVT-24.9.1/HVT/R/trainHVT.R | 492 ++++++++++--- HVT-24.9.1/HVT/README.md | 108 ++ HVT-24.9.1/HVT/inst/doc/HVT.Rmd | 74 + HVT-24.9.1/HVT/inst/doc/HVT.html | 83 +- HVT-24.9.1/HVT/man/clustHVT.Rd |only HVT-24.9.1/HVT/man/displayTable.Rd | 30 HVT-24.9.1/HVT/man/edaPlots.Rd | 14 HVT-24.9.1/HVT/man/madPlot.Rd | 5 HVT-24.9.1/HVT/man/plotHVT.Rd | 17 HVT-24.9.1/HVT/man/plotModelDiagnostics.Rd | 2 HVT-24.9.1/HVT/man/scoreHVT.Rd | 19 HVT-24.9.1/HVT/man/trainHVT.Rd | 57 + HVT-24.9.1/HVT/tests/testthat/testhvt.R | 24 HVT-24.9.1/HVT/vignettes/HVT.Rmd | 74 + 39 files changed, 1459 insertions(+), 761 deletions(-)
Title: Survey Defense Tool
Description: This tool is designed to analyze up to 5 Fraud Detection Questions integrated into a survey, focusing on potential fraudulent participants to clean the survey dataset from potential fraud. Fraud Detection Questions and further information available at <https://surveydefense.org>.
Author: Philipp Brueggemann [aut, cre]
Maintainer: Philipp Brueggemann <philippbrueggemann@web.de>
Diff between SurveyDefense versions 0.1.0 dated 2024-06-13 and 0.2.0 dated 2024-09-11
DESCRIPTION | 10 MD5 | 10 NAMESPACE | 2 R/SurveyDefense.R | 557 ++++++++++++++++++++++++++++++++++++----------------- man/FraudDetec1.Rd | 4 man/FraudDetec2.Rd | 4 6 files changed, 401 insertions(+), 186 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-31 0.2.4
2024-07-04 0.2.3
2024-07-02 0.2.2
2024-03-31 0.2.1
2024-03-29 0.2.0
2024-03-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-11 1.2.0
2023-08-12 1.1.1
2023-08-07 1.1.0
2023-06-08 1.0.2
2022-11-28 1.0.1
2022-11-21 1.0.0
Title: The Machine Learning and AI Modeling Companion to 'healthyR'
Description: Hospital machine learning and ai data analysis workflow tools, modeling, and automations.
This library provides many useful tools to review common administrative
hospital data. Some of these include predicting length of stay, and readmits.
The aim is to provide a simple and consistent verb framework that takes the
guesswork out of everything.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR.ai versions 0.0.13 dated 2023-04-02 and 0.1.0 dated 2024-09-11
healthyR.ai-0.0.13/healthyR.ai/man/figures/test3.png |only healthyR.ai-0.1.0/healthyR.ai/DESCRIPTION | 21 healthyR.ai-0.1.0/healthyR.ai/MD5 | 56 - healthyR.ai-0.1.0/healthyR.ai/NAMESPACE | 1 healthyR.ai-0.1.0/healthyR.ai/NEWS.md | 12 healthyR.ai-0.1.0/healthyR.ai/R/00_global_variables.R | 23 healthyR.ai-0.1.0/healthyR.ai/R/data-prep-earth.R | 110 +- healthyR.ai-0.1.0/healthyR.ai/R/utils-mesh-generator.R |only healthyR.ai-0.1.0/healthyR.ai/README.md | 3 healthyR.ai-0.1.0/healthyR.ai/build/vignette.rds |binary healthyR.ai-0.1.0/healthyR.ai/inst/doc/auto-kmeans.R | 2 healthyR.ai-0.1.0/healthyR.ai/inst/doc/auto-kmeans.html | 66 - healthyR.ai-0.1.0/healthyR.ai/inst/doc/getting-started.R | 2 healthyR.ai-0.1.0/healthyR.ai/inst/doc/getting-started.html | 453 +++++----- healthyR.ai-0.1.0/healthyR.ai/inst/doc/kmeans-umap.R | 2 healthyR.ai-0.1.0/healthyR.ai/inst/doc/kmeans-umap.html | 274 +++--- healthyR.ai-0.1.0/healthyR.ai/man/figures/README-example-1.png |binary healthyR.ai-0.1.0/healthyR.ai/man/figures/README-example-2.png |binary healthyR.ai-0.1.0/healthyR.ai/man/figures/logo.png |only healthyR.ai-0.1.0/healthyR.ai/man/generate_mesh_data.Rd |only healthyR.ai-0.1.0/healthyR.ai/man/hai_kmeans_mapped_tbl.Rd | 2 healthyR.ai-0.1.0/healthyR.ai/man/hai_kmeans_obj.Rd | 2 healthyR.ai-0.1.0/healthyR.ai/man/hai_kmeans_scree_data_tbl.Rd | 2 healthyR.ai-0.1.0/healthyR.ai/man/hai_kmeans_scree_plt.Rd | 2 healthyR.ai-0.1.0/healthyR.ai/man/hai_kmeans_tidy_tbl.Rd | 2 healthyR.ai-0.1.0/healthyR.ai/man/hai_kmeans_user_item_tbl.Rd | 2 healthyR.ai-0.1.0/healthyR.ai/man/step_hai_hyperbolic.Rd | 2 healthyR.ai-0.1.0/healthyR.ai/man/step_hai_scale_zero_one.Rd | 2 healthyR.ai-0.1.0/healthyR.ai/man/step_hai_scale_zscore.Rd | 2 healthyR.ai-0.1.0/healthyR.ai/man/step_hai_winsorized_move.Rd | 2 healthyR.ai-0.1.0/healthyR.ai/man/step_hai_winsorized_truncate.Rd | 2 31 files changed, 533 insertions(+), 514 deletions(-)
Title: Building Predictive Models with Stacking
Description: Building predictive models with stacking which is a type of ensemble learning. Learners can be specified from those implemented in 'caret'. For more information of the package, see Nukui and Onogi (2023) <doi:10.1101/2023.06.06.543970>. Packages caret, parallel, snow, and packages for base and meta learners should be installed.
Author: Taichi Nukui [aut, cph],
Akio Onogi [aut, cre, cph]
Maintainer: Akio Onogi <onogiakio@gmail.com>
Diff between stacking versions 0.1.2 dated 2023-09-01 and 0.1.3 dated 2024-09-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/stacking_train.Rd | 2 +- man/train_basemodel.Rd | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Variational Bayesian Inference for Genome-Wide Regression
Description: Conducts linear regression using variational Bayesian inference, particularly optimized for genome-wide association mapping and whole-genome prediction which use a number of DNA markers as the explanatory variables. Provides seven regression models which select the important variables (i.e., the variables related to response variables) among the given explanatory variables in different ways (i.e., model structures).
Author: Akio Onogi [aut, cre, cph],
Hiroyoshi Iwata [cph],
Takuji Nishimura [ctb] ,
Makoto Matsumoto [ctb] ,
STRUCTURE software contributors [ctb] ,
Alan Miller [ctb] ,
Peter Beerli [ctb]
Maintainer: Akio Onogi <onogiakio@gmail.com>
Diff between VIGoR versions 1.1.4 dated 2024-05-28 and 1.1.5 dated 2024-09-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/vigor.Rd | 4 +--- 3 files changed, 7 insertions(+), 9 deletions(-)
Title: Latin Hypercube Designs (LHDs)
Description: Contains different algorithms and construction methods for optimal Latin hypercube designs (LHDs) with flexible sizes. Our package is comprehensive since it is capable of generating maximin distance LHDs, maximum projection LHDs, and orthogonal and nearly orthogonal LHDs. Detailed comparisons and summary of all the algorithms and construction methods in this package can be found at Hongzhi Wang, Qian Xiao and Abhyuday Mandal (2021) <doi:10.48550/arXiv.2010.09154>. This package is particularly useful in the area of Design and Analysis of Experiments (DAE). More specifically, design of computer experiments.
Author: Hongzhi Wang [aut, cre],
Qian Xiao [aut],
Abhyuday Mandal [aut]
Maintainer: Hongzhi Wang <wanghongzhi.ut@gmail.com>
Diff between LHD versions 1.3.3 dated 2021-07-31 and 1.4.0 dated 2024-09-10
DESCRIPTION | 14 MD5 | 24 NEWS.md | 30 R/FastMmLHD.R | 4 R/dij.R | 4 R/exchange.R | 2 build/vignette.rds |binary inst/doc/Vignette_for_LHD.R | 2 inst/doc/Vignette_for_LHD.html | 2130 +++++++++++++++------------------ man/dij.Rd | 4 man/exchange.Rd | 2 tests/testthat/testmyfunctions_part1.R | 137 ++ tests/testthat/testmyfunctions_part2.R | 18 13 files changed, 1191 insertions(+), 1180 deletions(-)
Title: Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data. In
particular representation, manipulation, rate estimation and
simulation for multistate data - the Lexis suite of functions, which
includes interfaces to 'mstate', 'etm' and 'cmprsk' packages.
Contains functions for Age-Period-Cohort and Lee-Carter modeling and
a function for interval censored data and some useful functions for
tabulation and plotting, as well as a number of epidemiological data
sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.53 dated 2024-07-18 and 2.55 dated 2024-09-10
Epi-2.53/Epi/vignettes/addLexis.tex |only Epi-2.53/Epi/vignettes/crisk.tex |only Epi-2.53/Epi/vignettes/flup.tex |only Epi-2.53/Epi/vignettes/simLexis.tex |only Epi-2.53/Epi/vignettes/yll.tex |only Epi-2.55/Epi/CHANGES | 18 Epi-2.55/Epi/DESCRIPTION | 8 Epi-2.55/Epi/MD5 | 44 Epi-2.55/Epi/R/ci.eta.R | 22 Epi-2.55/Epi/R/plotEst.R | 37 Epi-2.55/Epi/build |only Epi-2.55/Epi/inst/doc/addLexis.pdf |binary Epi-2.55/Epi/inst/doc/addLexis.rnw |only Epi-2.55/Epi/inst/doc/crisk.R | 14 Epi-2.55/Epi/inst/doc/crisk.pdf |binary Epi-2.55/Epi/inst/doc/crisk.rnw |only Epi-2.55/Epi/inst/doc/flup.R | 16 Epi-2.55/Epi/inst/doc/flup.pdf | 4537 +++++++++++++++++------------------- Epi-2.55/Epi/inst/doc/flup.rnw |only Epi-2.55/Epi/inst/doc/index.html |only Epi-2.55/Epi/inst/doc/simLexis.R | 6 Epi-2.55/Epi/inst/doc/simLexis.pdf |binary Epi-2.55/Epi/inst/doc/simLexis.rnw |only Epi-2.55/Epi/inst/doc/yll.R | 5 Epi-2.55/Epi/inst/doc/yll.pdf |binary Epi-2.55/Epi/inst/doc/yll.rnw |only Epi-2.55/Epi/man/ci.lin.Rd | 4 Epi-2.55/Epi/man/nice.Rd | 11 Epi-2.55/Epi/src/clogit.c | 28 29 files changed, 2397 insertions(+), 2353 deletions(-)
Title: CFO-Type Designs in Phase I/II Clinical Trials
Description: In phase I clinical trials, the primary objective is to ascertain the maximum tolerated dose (MTD) corresponding to a specified target toxicity rate. The subsequent phase II trials are designed to examine the potential efficacy of the drug based on the MTD obtained from the phase I trials, with the aim of identifying the optimal biological dose (OBD). The 'CFO' package facilitates the implementation of dose-finding trials by utilizing calibration-free odds type (CFO-type) designs. Specifically, it encompasses the calibration-free odds (CFO) (Jin and Yin (2022) <doi:10.1177/09622802221079353>), two-dimensional CFO (2dCFO) (Wang et al. (2023) <doi:10.3389/fonc.2023.1294258>), time-to-event CFO (TITE-CFO) (Jin and Yin (2023) <doi:10.1002/pst.2304>), fractional CFO (fCFO), accumulative CFO (aCFO), TITE-aCFO, and f-aCFO designs (Fang and Yin (2024) <doi: 10.1002/sim.10127>). It supports phase I/II trials for the CFO design and only phase I trials for the other CFO-ty [...truncated...]
Author: Jialu Fang [aut, cre],
Wenliang Wang [aut],
Ninghao Zhang [aut],
Guosheng Yin [aut]
Maintainer: Jialu Fang <u3008682@connect.hku.hk>
Diff between CFO versions 1.3.1 dated 2024-06-26 and 2.0.0 dated 2024-09-10
DESCRIPTION | 14 + MD5 | 66 ++++---- NAMESPACE | 3 R/CFO.next.R | 6 R/CFO.oc.R | 10 - R/CFO.selectmtd.R | 6 R/CFO.simu.R | 25 ++- R/CFO2d.next.R | 6 R/CFO2d.oc.R | 10 - R/CFO2d.selectmtd.R | 6 R/CFO2d.simu.R | 26 ++- R/CFOeff.next.R |only R/CFOeff.oc.R |only R/CFOeff.simu.R |only R/aCFO.next.R | 6 R/lateonset.next.R | 21 -- R/lateonset.simu.R | 27 ++- R/plot.cfo.R | 388 ++++++++++++++++++++++++++++++++----------------- R/print.cfo.R | 23 ++ R/summury.cfo.R | 232 +++++++++++++++++++++-------- man/CFO.next.Rd | 6 man/CFO.oc.Rd | 8 - man/CFO.selectmtd.Rd | 6 man/CFO.simu.Rd | 10 - man/CFO2d.next.Rd | 6 man/CFO2d.oc.Rd | 6 man/CFO2d.selectmtd.Rd | 6 man/CFO2d.simu.Rd | 11 - man/CFOeff.next.Rd |only man/CFOeff.oc.Rd |only man/CFOeff.simu.Rd |only man/aCFO.next.Rd | 6 man/lateonset.next.Rd | 10 - man/lateonset.simu.Rd | 13 - man/plot.cfo.Rd | 24 ++- man/print.cfo.Rd | 23 ++ man/summary.cfo.Rd | 23 ++ 37 files changed, 694 insertions(+), 339 deletions(-)
Title: An Interface to the 'AutoDesk' 'API' Platform
Description: An interface to the 'AutoDesk' 'API' Platform including the Authentication
'API' for obtaining authentication to the 'AutoDesk' Forge Platform, Data Management
'API' for managing data across the platform's cloud services, Design Automation 'API'
for performing automated tasks on design files in the cloud, Model
Derivative 'API' for translating design files into different formats, sending
them to the viewer app, and extracting design data, and Viewer for rendering
2D and 3D models.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between AutoDeskR versions 0.1.3 dated 2017-07-09 and 0.1.5 dated 2024-09-10
AutoDeskR-0.1.3/AutoDeskR/inst/doc/AutoDeskR.Rmd |only AutoDeskR-0.1.3/AutoDeskR/inst/doc/AutoDeskR.html |only AutoDeskR-0.1.3/AutoDeskR/vignettes/AutoDeskR.Rmd |only AutoDeskR-0.1.5/AutoDeskR/DESCRIPTION | 28 - AutoDeskR-0.1.5/AutoDeskR/MD5 | 72 ++-- AutoDeskR-0.1.5/AutoDeskR/NEWS.md | 4 AutoDeskR-0.1.5/AutoDeskR/R/authentication.R | 1 AutoDeskR-0.1.5/AutoDeskR/R/dataManagement.R | 3 AutoDeskR-0.1.5/AutoDeskR/R/designAutomation.R | 4 AutoDeskR-0.1.5/AutoDeskR/R/modelDerivative.R | 16 AutoDeskR-0.1.5/AutoDeskR/R/viewer.R | 4 AutoDeskR-0.1.5/AutoDeskR/README.md | 225 -------------- AutoDeskR-0.1.5/AutoDeskR/build/vignette.rds |binary AutoDeskR-0.1.5/AutoDeskR/inst/CITATION |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Authentication.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Authentication.html |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Data-Management.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Data-Management.html |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Design-Automation.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Design-Automation.html |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Model-Derivative.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Model-Derivative.html |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Troubleshooting.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Troubleshooting.html |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Viewer.Rmd |only AutoDeskR-0.1.5/AutoDeskR/inst/doc/Viewer.html |only AutoDeskR-0.1.5/AutoDeskR/man/checkBucket.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/checkFile.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/checkPdf.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/downloadFile.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/getData.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/getMetadata.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/getObjectTree.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/getOutputUrn.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/getToken.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/makeBucket.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/makePdf.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/translateObj.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/translateSvf.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/uploadFile.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/viewer3D.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/man/viewerUI.Rd | 3 AutoDeskR-0.1.5/AutoDeskR/vignettes/Authentication.Rmd |only AutoDeskR-0.1.5/AutoDeskR/vignettes/Data-Management.Rmd |only AutoDeskR-0.1.5/AutoDeskR/vignettes/Design-Automation.Rmd |only AutoDeskR-0.1.5/AutoDeskR/vignettes/Model-Derivative.Rmd |only AutoDeskR-0.1.5/AutoDeskR/vignettes/Troubleshooting.Rmd |only AutoDeskR-0.1.5/AutoDeskR/vignettes/Viewer.Rmd |only 48 files changed, 79 insertions(+), 326 deletions(-)
Title: UK Flood Estimation
Description: Functions to implement the methods of the Flood Estimation Handbook (FEH), associated updates and the revitalised flood hydrograph model (ReFH). Currently the package uses NRFA peak flow dataset version 13. Aside from FEH functionality, further hydrological functions are available. Most of the methods implemented in this package are described in one or more of the following: "Flood Estimation Handbook", Centre for Ecology & Hydrology (1999, ISBN:0 948540 94 X). "Flood Estimation Handbook Supplementary Report No. 1", Kjeldsen (2007, ISBN:0 903741 15 7). "Regional Frequency Analysis - an approach based on L-moments", Hosking & Wallis (1997, ISBN: 978 0 521 01940 8). "Proposal of the extreme rank plot for extreme value analysis: with an emphasis on flood frequency studies", Hammond (2019, <doi:10.2166/nh.2019.157>). "Making better use of local data in flood frequency estimation", Environment Agency (2017, ISBN: 978 1 84911 387 8). "Sampling uncertainty of UK design flood est [...truncated...]
Author: Anthony Hammond [aut, cre]
Maintainer: Anthony Hammond <agqhammond@gmail.com>
Diff between UKFE versions 0.3.5 dated 2024-05-16 and 0.3.6 dated 2024-09-10
UKFE-0.3.5/UKFE/man/RainEA.Rd |only UKFE-0.3.5/UKFE/man/RainSEPA.Rd |only UKFE-0.3.6/UKFE/DESCRIPTION | 16 - UKFE-0.3.6/UKFE/MD5 | 73 ++--- UKFE-0.3.6/UKFE/R/AMSP.R | 4 UKFE-0.3.6/UKFE/R/All.R | 460 +++++++++++++++++++++++++++------- UKFE-0.3.6/UKFE/R/NRFAData.R | 4 UKFE-0.3.6/UKFE/R/QMEDData.R | 6 UKFE-0.3.6/UKFE/R/RainAPI.R | 155 ++++++++++- UKFE-0.3.6/UKFE/data/AMSP.rda |binary UKFE-0.3.6/UKFE/data/NRFAData.rda |binary UKFE-0.3.6/UKFE/data/QMEDData.rda |binary UKFE-0.3.6/UKFE/man/AMSP.Rd | 4 UKFE-0.3.6/UKFE/man/AggDayHour.Rd | 6 UKFE-0.3.6/UKFE/man/DiagPlots.Rd | 8 UKFE-0.3.6/UKFE/man/ERPlot.Rd |only UKFE-0.3.6/UKFE/man/EVPool.Rd | 20 - UKFE-0.3.6/UKFE/man/GetMetOffice.Rd |only UKFE-0.3.6/UKFE/man/GetNRFA.Rd |only UKFE-0.3.6/UKFE/man/GetRainEA.Rd |only UKFE-0.3.6/UKFE/man/GetRainSEPA.Rd |only UKFE-0.3.6/UKFE/man/GoFCompare.Rd |only UKFE-0.3.6/UKFE/man/GoFComparePool.Rd |only UKFE-0.3.6/UKFE/man/LKurt.Rd | 4 UKFE-0.3.6/UKFE/man/LSkew.Rd | 4 UKFE-0.3.6/UKFE/man/Lcv.Rd | 4 UKFE-0.3.6/UKFE/man/Lmoms.Rd | 4 UKFE-0.3.6/UKFE/man/NRFAData.Rd | 4 UKFE-0.3.6/UKFE/man/OptimPars.Rd | 2 UKFE-0.3.6/UKFE/man/QMED.Rd | 8 UKFE-0.3.6/UKFE/man/QMEDData.Rd | 6 UKFE-0.3.6/UKFE/man/QMEDDonEq.Rd | 14 - UKFE-0.3.6/UKFE/man/TrendTest.Rd | 21 - UKFE-0.3.6/UKFE/man/WGaugLSkew.Rd | 6 UKFE-0.3.6/UKFE/man/WGaugLcv.Rd | 6 UKFE-0.3.6/UKFE/man/WeightsGLSkew.Rd | 6 UKFE-0.3.6/UKFE/man/WeightsGLcv.Rd | 6 UKFE-0.3.6/UKFE/man/WeightsUnLSkew.Rd | 6 UKFE-0.3.6/UKFE/man/WeightsUnLcv.Rd | 6 UKFE-0.3.6/UKFE/man/WungLSkew.Rd | 6 UKFE-0.3.6/UKFE/man/WungLcv.Rd | 6 UKFE-0.3.6/UKFE/man/Zdists.Rd | 2 42 files changed, 658 insertions(+), 219 deletions(-)
Title: A Framework for Enterprise Shiny Applications
Description: A framework that supports creating and extending enterprise Shiny applications using best practices.
Author: Kamil Zyla [aut, cre],
Jakub Nowicki [aut],
Leszek Sieminski [aut],
Marek Rogala [aut],
Recle Vibal [aut],
Tymoteusz Makowski [aut],
Rodrigo Basa [aut],
Eduardo Almeida [ctb],
Appsilon Sp. z o.o. [cph]
Maintainer: Kamil Zyla <opensource+kamil@appsilon.com>
Diff between rhino versions 1.9.0 dated 2024-07-10 and 1.10.0 dated 2024-09-10
DESCRIPTION | 14 +++++----- MD5 | 23 +++++++++-------- NAMESPACE | 1 NEWS.md | 14 ++++++++-- R/dependencies.R | 3 ++ R/linters.R | 5 +++ R/tools.R | 52 ++++++++++++++++++++++++++++++++++++--- inst/WORDLIST | 2 + inst/templates/renv/dot.Rprofile | 7 +++++ man/format_r.Rd | 24 ++++++++++++++++-- man/lint_r.Rd | 4 +++ tests/e2e/test-box-lsp.R |only tests/e2e/test-lint-r.R | 2 + 13 files changed, 125 insertions(+), 26 deletions(-)
Title: High-Level Functions for Tabulating, Charting and Reporting
Survey Data
Description: Craft polished tables and plots in Markdown reports.
Simply choose whether to treat your data as counts or metrics,
and the package will automatically generate well-designed default tables and plots for you.
Boiled down to the basics, with labeling features and simple interactive reports.
All functions are 'tidyverse' compatible.
Author: Jakob Juenger [aut, cre, cph] ,
Henrieke Kotthoff [aut, ctb],
Chantal Gaertner [ctb]
Maintainer: Jakob Juenger <jakob.juenger@uni-muenster.de>
Diff between volker versions 2.0.1 dated 2024-05-11 and 2.1.0 dated 2024-09-10
volker-2.0.1/volker/man/VLKR_NA_NUMERIC.Rd |only volker-2.0.1/volker/man/get_cohensd.Rd |only volker-2.0.1/volker/man/knit_plot.Rd |only volker-2.0.1/volker/man/knit_prepare.Rd |only volker-2.0.1/volker/man/knit_table.Rd |only volker-2.1.0/volker/DESCRIPTION | 20 volker-2.1.0/volker/MD5 | 241 + volker-2.1.0/volker/NAMESPACE | 18 volker-2.1.0/volker/NEWS.md | 6 volker-2.1.0/volker/R/checks.R | 31 volker-2.1.0/volker/R/clean.R | 296 +- volker-2.1.0/volker/R/config.R | 91 volker-2.1.0/volker/R/data.R | 2 volker-2.1.0/volker/R/effects.R | 823 ++++-- volker-2.1.0/volker/R/idx.R | 36 volker-2.1.0/volker/R/labels.R | 369 ++ volker-2.1.0/volker/R/plots.R | 1296 +++++++--- volker-2.1.0/volker/R/report.R | 90 volker-2.1.0/volker/R/skim.R | 2 volker-2.1.0/volker/R/tables.R | 905 +++++- volker-2.1.0/volker/R/utils.R | 24 volker-2.1.0/volker/README.md | 340 +- volker-2.1.0/volker/data/chatgpt.rda |binary volker-2.1.0/volker/inst/doc/introduction.R | 71 volker-2.1.0/volker/inst/doc/introduction.Rmd | 136 - volker-2.1.0/volker/inst/doc/introduction.html | 279 +- volker-2.1.0/volker/inst/extdata/header.tex |only volker-2.1.0/volker/inst/rmarkdown/templates/volker-report/skeleton/skeleton.Rmd | 100 volker-2.1.0/volker/man/VLKR_FIG_SETTINGS.Rd |only volker-2.1.0/volker/man/VLKR_FILLDISCRETE.Rd | 2 volker-2.1.0/volker/man/VLKR_FILLGRADIENT.Rd | 2 volker-2.1.0/volker/man/VLKR_FILLPOLARIZED.Rd |only volker-2.1.0/volker/man/VLKR_NA_LEVELS.Rd | 2 volker-2.1.0/volker/man/VLKR_NA_NUMBERS.Rd |only volker-2.1.0/volker/man/VLKR_NORMAL_DIGITS.Rd |only volker-2.1.0/volker/man/VLKR_PLOT_LABELWRAP.Rd |only volker-2.1.0/volker/man/VLKR_POINT_ALPHA.Rd |only volker-2.1.0/volker/man/VLKR_POINT_MEAN_SHAPE.Rd |only volker-2.1.0/volker/man/VLKR_POINT_SIZE.Rd |only volker-2.1.0/volker/man/VLKR_WRAP_SEPARATOR.Rd |only volker-2.1.0/volker/man/cfg_get_na_numbers.Rd |only volker-2.1.0/volker/man/chatgpt.Rd | 2 volker-2.1.0/volker/man/check_is_param.Rd |only volker-2.1.0/volker/man/codebook.Rd | 2 volker-2.1.0/volker/man/data_clean.Rd | 8 volker-2.1.0/volker/man/data_clean_sosci.Rd | 20 volker-2.1.0/volker/man/data_prepare.Rd |only volker-2.1.0/volker/man/data_rm_na_levels.Rd |only volker-2.1.0/volker/man/data_rm_na_numbers.Rd |only volker-2.1.0/volker/man/dot-effect_correlations.Rd | 3 volker-2.1.0/volker/man/dot-effect_npmi.Rd |only volker-2.1.0/volker/man/dot-factor_with_attr.Rd |only volker-2.1.0/volker/man/dot-get_fig_settings.Rd |only volker-2.1.0/volker/man/dot-knit_plot.Rd |only volker-2.1.0/volker/man/dot-knit_prepare.Rd |only volker-2.1.0/volker/man/dot-knit_table.Rd |only volker-2.1.0/volker/man/dot-plot_cor.Rd |only volker-2.1.0/volker/man/dot-plot_lines.Rd | 16 volker-2.1.0/volker/man/dot-plot_summary.Rd |only volker-2.1.0/volker/man/dot-tab_split.Rd |only volker-2.1.0/volker/man/dot-to_vlkr_plot.Rd | 12 volker-2.1.0/volker/man/effect_counts.Rd | 20 volker-2.1.0/volker/man/effect_counts_items.Rd | 12 volker-2.1.0/volker/man/effect_counts_items_cor.Rd | 6 volker-2.1.0/volker/man/effect_counts_items_cor_items.Rd |only volker-2.1.0/volker/man/effect_counts_items_grouped.Rd | 2 volker-2.1.0/volker/man/effect_counts_items_grouped_items.Rd |only volker-2.1.0/volker/man/effect_counts_one.Rd | 19 volker-2.1.0/volker/man/effect_counts_one_cor.Rd | 4 volker-2.1.0/volker/man/effect_metrics.Rd | 20 volker-2.1.0/volker/man/effect_metrics_items.Rd | 20 volker-2.1.0/volker/man/effect_metrics_items_cor.Rd | 14 volker-2.1.0/volker/man/effect_metrics_items_cor_items.Rd |only volker-2.1.0/volker/man/effect_metrics_items_grouped.Rd | 25 volker-2.1.0/volker/man/effect_metrics_items_grouped_items.Rd |only volker-2.1.0/volker/man/effect_metrics_one.Rd | 15 volker-2.1.0/volker/man/effect_metrics_one_cor.Rd | 5 volker-2.1.0/volker/man/effect_metrics_one_grouped.Rd | 8 volker-2.1.0/volker/man/figures/plot_counts_one_grouped.png |binary volker-2.1.0/volker/man/figures/plot_metrics_items.png |binary volker-2.1.0/volker/man/figures/report_example.png |only volker-2.1.0/volker/man/get_angle.Rd |only volker-2.1.0/volker/man/get_baseline.Rd | 8 volker-2.1.0/volker/man/get_gini.Rd |only volker-2.1.0/volker/man/get_limits.Rd | 12 volker-2.1.0/volker/man/get_title.Rd | 4 volker-2.1.0/volker/man/idx_add.Rd | 8 volker-2.1.0/volker/man/knit_print.vlkr_plt.Rd |only volker-2.1.0/volker/man/labs_apply.Rd | 82 volker-2.1.0/volker/man/labs_impute.Rd |only volker-2.1.0/volker/man/labs_replace.Rd | 6 volker-2.1.0/volker/man/labs_restore.Rd | 5 volker-2.1.0/volker/man/labs_store.Rd | 6 volker-2.1.0/volker/man/pdf_report.Rd |only volker-2.1.0/volker/man/plot_counts.Rd | 39 volker-2.1.0/volker/man/plot_counts_items_cor.Rd | 41 volker-2.1.0/volker/man/plot_counts_items_cor_items.Rd |only volker-2.1.0/volker/man/plot_counts_items_grouped.Rd | 38 volker-2.1.0/volker/man/plot_counts_items_grouped_items.Rd |only volker-2.1.0/volker/man/plot_counts_one_cor.Rd | 38 volker-2.1.0/volker/man/plot_metrics.Rd | 36 volker-2.1.0/volker/man/plot_metrics_items.Rd | 3 volker-2.1.0/volker/man/plot_metrics_items_cor.Rd | 19 volker-2.1.0/volker/man/plot_metrics_items_cor_items.Rd |only volker-2.1.0/volker/man/plot_metrics_items_grouped.Rd | 3 volker-2.1.0/volker/man/plot_metrics_items_grouped_items.Rd |only volker-2.1.0/volker/man/plot_metrics_one.Rd | 3 volker-2.1.0/volker/man/plot_metrics_one_cor.Rd | 3 volker-2.1.0/volker/man/plot_metrics_one_grouped.Rd | 3 volker-2.1.0/volker/man/skim_metrics.Rd | 2 volker-2.1.0/volker/man/tab_counts.Rd | 30 volker-2.1.0/volker/man/tab_counts_items_cor.Rd | 52 volker-2.1.0/volker/man/tab_counts_items_cor_items.Rd |only volker-2.1.0/volker/man/tab_counts_items_grouped.Rd | 42 volker-2.1.0/volker/man/tab_counts_items_grouped_items.Rd |only volker-2.1.0/volker/man/tab_counts_one_cor.Rd | 35 volker-2.1.0/volker/man/tab_metrics.Rd | 28 volker-2.1.0/volker/man/tab_metrics_items.Rd | 3 volker-2.1.0/volker/man/tab_metrics_items_cor.Rd | 12 volker-2.1.0/volker/man/tab_metrics_items_cor_items.Rd |only 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240 + volker-2.1.0/volker/tests/testthat/_snaps/utils.md |only volker-2.1.0/volker/tests/testthat/test-checks.R |only volker-2.1.0/volker/tests/testthat/test-clean.R | 56 volker-2.1.0/volker/tests/testthat/test-effects.R | 54 volker-2.1.0/volker/tests/testthat/test-labels.R | 135 - volker-2.1.0/volker/tests/testthat/test-plots.R |only volker-2.1.0/volker/tests/testthat/test-tables.R | 101 volker-2.1.0/volker/tests/testthat/test-theme.R |only volker-2.1.0/volker/tests/testthat/test-utils.R | 25 volker-2.1.0/volker/tests/testthat/test_skim.R |only volker-2.1.0/volker/vignettes/introduction.Rmd | 136 - 149 files changed, 5654 insertions(+), 2353 deletions(-)
Title: R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also
see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Author: Dirk Eddelbuettel [aut, cre] ,
Gabi Melman [aut] ,
Victor Zverovic [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.17 dated 2024-04-26 and 0.0.18 dated 2024-09-10
ChangeLog | 16 DESCRIPTION | 18 MD5 | 42 - README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 19 inst/doc/introduction.html | 786 +++++++++++++------------- inst/include/RcppSpdlog | 1 inst/include/spdlog/common.h | 2 inst/include/spdlog/details/file_helper-inl.h | 2 inst/include/spdlog/details/os-inl.h | 9 inst/include/spdlog/details/registry-inl.h | 27 inst/include/spdlog/details/registry.h | 15 inst/include/spdlog/details/thread_pool.h | 4 inst/include/spdlog/fmt/fmt.h | 2 inst/include/spdlog/mdc.h | 54 + inst/include/spdlog/pattern_formatter-inl.h | 8 inst/include/spdlog/spdlog-inl.h | 10 inst/include/spdlog/spdlog.h | 8 inst/include/spdlog/version.h | 2 src/interface.cpp | 3 22 files changed, 519 insertions(+), 511 deletions(-)
Title: Bayesian Gower Agreement for Categorical Data
Description: Provides tools for applying the Bayesian Gower agreement methodology (presented in the package vignette) to nominal or ordinal data. The framework can accommodate any number of units, any number of coders, and missingness; and can handle both one-way and two-way random study designs. Influential units and/or coders can be identified easily using leave-one-out statistics.
Author: John Hughes [aut, cre]
Maintainer: John Hughes <drjphughesjr@gmail.com>
Diff between goweragreement versions 1.0 dated 2024-02-02 and 1.0-1 dated 2024-09-10
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/gower.R | 27 ++++++++++++--------------- 3 files changed, 19 insertions(+), 22 deletions(-)
More information about goweragreement at CRAN
Permanent link
Title: Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, summarize, and apply Generalized Dissimilarity Models. Mokany K, Ware C, Woolley SNC, Ferrier S, Fitzpatrick MC (2022) <doi:10.1111/geb.13459> Ferrier S, Manion G, Elith J, Richardson K (2007) <doi:10.1111/j.1472-4642.2007.00341.x>.
Author: Matt Fitzpatrick [aut, cre] ,
Karel Mokany [aut] ,
Glenn Manion [aut],
Diego Nieto-Lugilde [aut] ,
Simon Ferrier [aut] ,
Roozbeh Valavi [ctb],
Matthew Lisk [ctb],
Chris Ware [ctb],
Skip Woolley [ctb],
Tom Harwood [ctb]
Maintainer: Matt Fitzpatrick <mfitzpatrick@umces.edu>
Diff between gdm versions 1.5.0-9.1 dated 2022-12-01 and 1.6.0-1 dated 2024-09-10
gdm-1.5.0-9.1/gdm/data/gdmDissim.RData |only gdm-1.6.0-1/gdm/DESCRIPTION | 17 gdm-1.6.0-1/gdm/MD5 | 67 ++- gdm-1.6.0-1/gdm/NAMESPACE | 8 gdm-1.6.0-1/gdm/NEWS.md | 7 gdm-1.6.0-1/gdm/R/data.R | 2 gdm-1.6.0-1/gdm/R/gdm.calculate.deviance.R | 2 gdm-1.6.0-1/gdm/R/gdm.checks.R |only gdm-1.6.0-1/gdm/R/gdm.createsitepair.R | 6 gdm-1.6.0-1/gdm/R/gdm.crossvalidation.R | 2 gdm-1.6.0-1/gdm/R/gdm.fit.R | 2 gdm-1.6.0-1/gdm/R/gdm.formatsitepair.R | 190 +++++----- gdm-1.6.0-1/gdm/R/gdm.predict.R | 174 +++++---- gdm-1.6.0-1/gdm/R/gdm.single.crossvalidation.R | 2 gdm-1.6.0-1/gdm/R/gdm.transform.R | 265 +++++--------- gdm-1.6.0-1/gdm/README.md | 206 ++++++---- gdm-1.6.0-1/gdm/data/gdmDissim2.RData |only gdm-1.6.0-1/gdm/inst/extdata/swBioclims.grd | 47 +- gdm-1.6.0-1/gdm/inst/extdata/swBioclims.gri |binary gdm-1.6.0-1/gdm/inst/extdata/test_data |only gdm-1.6.0-1/gdm/inst/tinytest |only gdm-1.6.0-1/gdm/man/figures/README-extractSplines-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-plotGDM-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-predictSpaceGDM-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-predictTimeGDM-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-transformGDM-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-unnamed-chunk-10-1.png |binary gdm-1.6.0-1/gdm/man/figures/README-unnamed-chunk-9-1.png |only gdm-1.6.0-1/gdm/man/formatsitepair.Rd | 46 +- gdm-1.6.0-1/gdm/man/gdm.Rd | 2 gdm-1.6.0-1/gdm/man/gdm.transform.Rd | 47 +- gdm-1.6.0-1/gdm/man/gdmDissim.Rd | 2 gdm-1.6.0-1/gdm/man/predict.gdm.Rd | 12 gdm-1.6.0-1/gdm/src/Makevars | 2 gdm-1.6.0-1/gdm/src/Makevars.win | 2 gdm-1.6.0-1/gdm/tests |only 36 files changed, 600 insertions(+), 510 deletions(-)
Title: Analyze Paleontological Time-Series
Description: Facilitates analysis of paleontological sequences of trait values.
Functions are provided to fit, using maximum likelihood, simple
evolutionary models (including unbiased random walks, directional
evolution,stasis, Ornstein-Uhlenbeck, covariate-tracking) and
complex models (punctuation, mode shifts).
Author: Gene Hunt [aut, cre, cph] ,
John Fricks [ctb]
Maintainer: Gene Hunt <hunte@si.edu>
Diff between paleoTS versions 0.6.1 dated 2024-06-06 and 0.6.2 dated 2024-09-10
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 11 +++++++++++ R/basics.R | 2 +- R/complexModels.R | 10 +++++----- R/simpleModels.R | 3 +++ README.md | 6 +++--- build/vignette.rds |binary inst/doc/paleoTS_basics.html | 4 ++-- man/bootSimpleComplex.Rd | 6 +++--- man/figures/README-example-1.png |binary man/fitGpunc.Rd | 4 ++-- 12 files changed, 44 insertions(+), 30 deletions(-)
Title: Hyperparameter Optimization for 'mlr3'
Description: Hyperparameter optimization package of the 'mlr3' ecosystem.
It features highly configurable search spaces via the 'paradox'
package and finds optimal hyperparameter configurations for any 'mlr3'
learner. 'mlr3tuning' works with several optimization algorithms e.g.
Random Search, Iterated Racing, Bayesian Optimization (in 'mlr3mbo')
and Hyperband (in 'mlr3hyperband'). Moreover, it can automatically
optimize learners and estimate the performance of optimized models
with nested resampling.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Jakob Richter [aut] ,
Bernd Bischl [aut] ,
Daniel Schalk [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 1.0.0 dated 2024-06-29 and 1.0.1 dated 2024-09-10
mlr3tuning-1.0.0/mlr3tuning/tests/testthat/test_TuningInstanceMultiCrit.R |only mlr3tuning-1.0.0/mlr3tuning/tests/testthat/test_TuningInstanceSingleCrit.R |only mlr3tuning-1.0.1/mlr3tuning/DESCRIPTION | 12 - mlr3tuning-1.0.1/mlr3tuning/MD5 | 112 +++++----- mlr3tuning-1.0.1/mlr3tuning/NEWS.md | 5 mlr3tuning-1.0.1/mlr3tuning/R/ArchiveAsyncTuning.R | 13 - mlr3tuning-1.0.1/mlr3tuning/R/ArchiveBatchTuning.R | 13 - mlr3tuning-1.0.1/mlr3tuning/R/AutoTuner.R | 67 +---- mlr3tuning-1.0.1/mlr3tuning/R/CallbackAsyncTuning.R | 26 +- mlr3tuning-1.0.1/mlr3tuning/R/ContextAsyncTuning.R | 4 mlr3tuning-1.0.1/mlr3tuning/R/ObjectiveTuning.R | 9 mlr3tuning-1.0.1/mlr3tuning/R/ObjectiveTuningAsync.R | 8 mlr3tuning-1.0.1/mlr3tuning/R/ObjectiveTuningBatch.R | 17 + mlr3tuning-1.0.1/mlr3tuning/R/TunerAsyncFromOptimizerAsync.R | 14 + mlr3tuning-1.0.1/mlr3tuning/R/TunerBatch.R | 7 mlr3tuning-1.0.1/mlr3tuning/R/TunerBatchFromBatchOptimizer.R | 22 + mlr3tuning-1.0.1/mlr3tuning/R/TunerBatchInternal.R | 5 mlr3tuning-1.0.1/mlr3tuning/R/TunerBatchIrace.R | 7 mlr3tuning-1.0.1/mlr3tuning/R/TuningInstanceAsyncMulticrit.R | 58 +++-- mlr3tuning-1.0.1/mlr3tuning/R/TuningInstanceAsyncSingleCrit.R | 54 +++- mlr3tuning-1.0.1/mlr3tuning/R/TuningInstanceBatchMulticrit.R | 60 +++-- mlr3tuning-1.0.1/mlr3tuning/R/TuningInstanceBatchSingleCrit.R | 58 +++-- mlr3tuning-1.0.1/mlr3tuning/R/auto_tuner.R | 3 mlr3tuning-1.0.1/mlr3tuning/R/helper.R | 84 +++---- mlr3tuning-1.0.1/mlr3tuning/R/mlr_callbacks.R | 95 -------- mlr3tuning-1.0.1/mlr3tuning/inst/testthat/helper_misc.R | 6 mlr3tuning-1.0.1/mlr3tuning/man/AutoTuner.Rd | 18 - mlr3tuning-1.0.1/mlr3tuning/man/ContextAsyncTuning.Rd | 2 mlr3tuning-1.0.1/mlr3tuning/man/ObjectiveTuning.Rd | 10 mlr3tuning-1.0.1/mlr3tuning/man/ObjectiveTuningBatch.Rd | 7 mlr3tuning-1.0.1/mlr3tuning/man/TunerAsyncFromOptimizerAsync.Rd | 8 mlr3tuning-1.0.1/mlr3tuning/man/TunerBatchFromOptimizerBatch.Rd | 8 mlr3tuning-1.0.1/mlr3tuning/man/TuningInstanceAsyncMultiCrit.Rd | 21 + mlr3tuning-1.0.1/mlr3tuning/man/TuningInstanceAsyncSingleCrit.Rd | 21 + mlr3tuning-1.0.1/mlr3tuning/man/TuningInstanceBatchMultiCrit.Rd | 14 - mlr3tuning-1.0.1/mlr3tuning/man/TuningInstanceBatchSingleCrit.Rd | 21 + mlr3tuning-1.0.1/mlr3tuning/man/auto_tuner.Rd | 4 mlr3tuning-1.0.1/mlr3tuning/man/callback_async_tuning.Rd | 24 +- mlr3tuning-1.0.1/mlr3tuning/man/mlr_tuners_internal.Rd | 5 mlr3tuning-1.0.1/mlr3tuning/man/set_validate.AutoTuner.Rd | 10 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/helper.R | 1 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_ArchiveAsyncTuning.R | 43 +++ mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_ArchiveBatchTuning.R | 11 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_AutoTuner.R | 73 ------ mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_Tuner.R | 1 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerAsyncDesignPoints.R | 4 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerAsyncGridSearch.R | 4 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerAsyncRandomSearch.R | 88 ------- mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerBatch.R |only mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerBatchFromOptimizerBatch.R |only mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerBatchIrace.R | 10 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TunerBatchRandomSearch.R | 1 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TuningInstanceAsyncMultiCrit.R | 71 +++++- mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TuningInstanceAsyncSingleCrit.R | 79 ++++++- mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TuningInstanceBatchMultiCrit.R |only mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_TuningInstanceBatchSingleCrit.R |only mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_auto_tuner.R | 6 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_error_handling.R | 8 mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_mlr_callbacks.R | 22 - mlr3tuning-1.0.1/mlr3tuning/tests/testthat/test_ti_async.R | 8 60 files changed, 752 insertions(+), 610 deletions(-)
Title: Maximum Likelihood Estimation of Various Univariate and
Multivariate Distributions
Description: Several functions for maximum likelihood estimation of various univariate and multivariate distributions. The list includes more than 100 univariate continuous and discrete distributions, distributions that lie on the real line, the positive line, interval restricted, circular distributions. Further, multivariate continuous and discrete distributions, distributions for compositional and directional data, etc. Some references include Johnson N. L., Kotz S. and Balakrishnan N. (1994). "Continuous Univariate Distributions, Volume 1" <ISBN:978-0-471-58495-7>, Johnson, Norman L. Kemp, Adrianne W. Kotz, Samuel (2005). "Univariate Discrete Distributions". <ISBN:978-0-471-71580-1> and Mardia, K. V. and Jupp, P. E. (2000). "Directional Statistics". <ISBN:978-0-471-95333-3>.
Author: Michail Tsagris [aut, cre],
Sofia Piperaki [aut],
Muhammad Imran [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between MLE versions 1.0 dated 2024-07-21 and 1.1 dated 2024-09-10
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/hspher.mle.R | 6 +++++- man/MLE-package.Rd | 4 ++-- man/hspher.mle.Rd | 14 +++++++++----- 5 files changed, 25 insertions(+), 17 deletions(-)
Title: Analyze Isotope Ratios in a 'Shiny'-App
Description: Analyzing Inductively Coupled Plasma - Mass Spectrometry (ICP-MS)
measurement data to evaluate isotope ratios (IRs) is a complex process.
The 'IsoCor' package facilitates this process and renders it reproducible
by providing a function to run a 'Shiny'-App locally in any web browser.
In this App the user can upload data files of various formats, select ion
traces, apply peak detection and perform calculation of IRs and delta
values. Results are provided as figures and tables and can be exported.
The App, therefore, facilitates data processing of ICP-MS experiments to
quickly obtain optimal processing parameters compared to traditional 'Excel'
worksheet based approaches. A more detailed description can be found in the
corresponding article <doi:10.1039/D2JA00208F>. The most recent version
of 'IsoCor' can be tested online at <https://apps.bam.de/shn00/IsoCor/>.
Author: Jan Lisec [aut, cre]
Maintainer: Jan Lisec <jan.lisec@bam.de>
Diff between IsoCor versions 0.1.40 dated 2022-09-07 and 0.2.8 dated 2024-09-10
IsoCor-0.1.40/IsoCor/R/find_peak_boundaries.R |only IsoCor-0.1.40/IsoCor/R/get_iso_amu.R |only IsoCor-0.1.40/IsoCor/R/help_the_user.R |only IsoCor-0.1.40/IsoCor/R/ic_specplot.R |only IsoCor-0.1.40/IsoCor/R/iso_ratio.R |only IsoCor-0.1.40/IsoCor/R/isotopes.R |only IsoCor-0.1.40/IsoCor/R/mass_bias.R |only IsoCor-0.1.40/IsoCor/R/read_clipboard.R |only IsoCor-0.1.40/IsoCor/R/read_raw_data.R |only IsoCor-0.1.40/IsoCor/R/testdata.R |only IsoCor-0.1.40/IsoCor/man/help_the_user.Rd |only IsoCor-0.1.40/IsoCor/tests/testthat/test-read_raw_data.R |only IsoCor-0.2.8/IsoCor/DESCRIPTION | 49 IsoCor-0.2.8/IsoCor/MD5 | 67 IsoCor-0.2.8/IsoCor/NAMESPACE | 114 IsoCor-0.2.8/IsoCor/R/app_config.R | 62 IsoCor-0.2.8/IsoCor/R/app_data.R |only IsoCor-0.2.8/IsoCor/R/app_functions.R |only IsoCor-0.2.8/IsoCor/R/app_plots.R |only IsoCor-0.2.8/IsoCor/R/app_tables.R |only IsoCor-0.2.8/IsoCor/R/app_utils.R |only IsoCor-0.2.8/IsoCor/R/ic_app.R | 2095 ++++------ IsoCor-0.2.8/IsoCor/README.md |only IsoCor-0.2.8/IsoCor/build |only IsoCor-0.2.8/IsoCor/data/testdata_IDMS.rda |only IsoCor-0.2.8/IsoCor/inst/CITATION |only IsoCor-0.2.8/IsoCor/inst/app/www/01_general.Rmd | 24 IsoCor-0.2.8/IsoCor/inst/app/www/03_import_params.Rmd | 32 IsoCor-0.2.8/IsoCor/inst/app/www/05_plot_options.Rmd | 37 IsoCor-0.2.8/IsoCor/inst/app/www/06_peak_table.Rmd | 93 IsoCor-0.2.8/IsoCor/inst/app/www/07_ratio_table.Rmd | 57 IsoCor-0.2.8/IsoCor/inst/app/www/08_delta_table.Rmd | 21 IsoCor-0.2.8/IsoCor/inst/app/www/09_IDMS_table.Rmd |only IsoCor-0.2.8/IsoCor/inst/app/www/10_processing_params_IDMS.Rmd |only IsoCor-0.2.8/IsoCor/inst/app/www/images/01_general_03.png |only IsoCor-0.2.8/IsoCor/inst/app/www/js/tracking-live.js |only IsoCor-0.2.8/IsoCor/inst/golem-config.yml | 3 IsoCor-0.2.8/IsoCor/man/find_peak_boundaries.Rd |only IsoCor-0.2.8/IsoCor/man/ic_app.Rd | 16 IsoCor-0.2.8/IsoCor/man/iso_ratio.Rd | 15 IsoCor-0.2.8/IsoCor/man/isotopes.Rd | 4 IsoCor-0.2.8/IsoCor/man/mass_bias.Rd | 12 IsoCor-0.2.8/IsoCor/man/read_raw_data.Rd | 9 IsoCor-0.2.8/IsoCor/man/testdata.Rd | 2 IsoCor-0.2.8/IsoCor/man/testdata_IDMS.Rd |only IsoCor-0.2.8/IsoCor/tests/testthat/_snaps |only IsoCor-0.2.8/IsoCor/tests/testthat/test-app_functions.R |only IsoCor-0.2.8/IsoCor/tests/testthat/test-ic_app.R |only IsoCor-0.2.8/IsoCor/tests/testthat/test_app_plots.R |only 49 files changed, 1194 insertions(+), 1518 deletions(-)
Title: Non-Longitudinal Bayesian Historical Borrowing Models
Description: Historical borrowing in clinical trials can improve
precision and operating characteristics. This package supports
a hierarchical model and a mixture model to borrow historical
control data from other studies to better characterize the
control response of the current study. It also quantifies
the amount of borrowing through benchmark models (independent
and pooled). Some of the methods are discussed by
Viele et al. (2013) <doi:10.1002/pst.1589>.
Author: William Michael Landau [aut, cre]
,
Albert Man [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between historicalborrow versions 1.0.4 dated 2022-09-13 and 1.1.0 dated 2024-09-10
DESCRIPTION | 12 MD5 | 82 +- NAMESPACE | 3 R/hb_ess.R |only R/hb_mcmc_hierarchical.R | 71 +- R/hb_metrics.R | 17 R/hb_package.R | 5 R/hb_plot_borrow.R | 24 R/hb_plot_group.R | 24 R/hb_s_tau.R | 7 R/hb_sim_hierarchical.R | 46 + R/hb_summary.R | 28 R/utils_jags.R | 9 README.md | 24 build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/methods.R | 2 inst/doc/methods.Rmd | 91 +- inst/doc/methods.html | 651 +++++++++++++------ inst/doc/usage.R | 25 inst/doc/usage.Rmd | 41 - inst/doc/usage.html | 984 ++++++++++++++++------------- inst/jags/hierarchical_beta.jags | 2 inst/jags/hierarchical_nobeta.jags | 2 man/hb_convergence.Rd | 2 man/hb_data.Rd | 4 man/hb_ess.Rd |only man/hb_mcmc_hierarchical.Rd | 54 + man/hb_mcmc_independent.Rd | 2 man/hb_mcmc_pool.Rd | 4 man/hb_metrics.Rd | 16 man/hb_plot_borrow.Rd | 3 man/hb_plot_group.Rd | 3 man/hb_s_tau.Rd | 11 man/hb_sim_hierarchical.Rd | 28 man/hb_summary.Rd | 18 man/historicalborrow-package.Rd | 1 tests/testthat/test-hb_ess.R |only tests/testthat/test-hb_mcmc_hierarchical.R | 130 ++- tests/testthat/test-hb_sim_hierarchical.R | 103 +-- tests/testthat/test-hb_summary.R | 28 vignettes/bibliography.bib |only vignettes/methods.Rmd | 91 +- vignettes/usage.Rmd | 41 - 44 files changed, 1650 insertions(+), 1043 deletions(-)
More information about historicalborrow at CRAN
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Title: The 'epilogi' Variable Selection Algorithm for Continuous Data
Description: The 'epilogi' variable selection algorithm is implemented for the case of continuous response and predictor variables. The relevant paper is: Lakiotaki K., Papadovasilakis Z., Lagani V., Fafalios S., Charonyktakis P., Tsagris M. and Tsamardinos I. (2023). "Automated machine learning for Genome Wide Association Studies". Bioinformatics. <doi:10.1093/bioinformatics/btad545>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between epilogi versions 1.0 dated 2023-10-01 and 1.1 dated 2024-09-10
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/epilogi-package.Rd | 4 ++-- 3 files changed, 9 insertions(+), 9 deletions(-)
More information about ContourFunctions at CRAN
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