Mon, 22 Sep 2014

Package secr updated to version 2.9.0 with previous version 2.8.2 dated 2014-04-30

Title: Spatially explicit capture-recapture
Description: Functions to estimate the density and size of a spatially distributed animal population sampled with an array of passive detectors, such as traps, or by searching polygons or transects. Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford

Diff between secr versions 2.8.2 dated 2014-04-30 and 2.9.0 dated 2014-09-22

 secr-2.8.2/secr/R/ARL.R                             |only
 secr-2.8.2/secr/R/MMDM.R                            |only
 secr-2.8.2/secr/R/RPSV.R                            |only
 secr-2.8.2/secr/R/dbar.R                            |only
 secr-2.9.0/secr/DESCRIPTION                         |   12 
 secr-2.9.0/secr/MD5                                 |  212 +++++----
 secr-2.9.0/secr/NAMESPACE                           |   29 +
 secr-2.9.0/secr/NEWS                                |   50 ++
 secr-2.9.0/secr/R/D.designdata.R                    |    1 
 secr-2.9.0/secr/R/DENSITY.R                         |   22 -
 secr-2.9.0/secr/R/Dsurface.R                        |   14 
 secr-2.9.0/secr/R/PG.R                              |    3 
 secr-2.9.0/secr/R/addCovariates.R                   |   25 +
 secr-2.9.0/secr/R/autoini.R                         |   11 
 secr-2.9.0/secr/R/confint.secr.R                    |   14 
 secr-2.9.0/secr/R/derivedMS.R                       |    3 
 secr-2.9.0/secr/R/esa.R                             |   89 ++--
 secr-2.9.0/secr/R/fxi.R                             |  408 +++++++++---------
 secr-2.9.0/secr/R/homerange.R                       |only
 secr-2.9.0/secr/R/make.mask.R                       |   12 
 secr-2.9.0/secr/R/mask.check.R                      |   14 
 secr-2.9.0/secr/R/methods.R                         |  345 ++-------------
 secr-2.9.0/secr/R/model.average.R                   |   16 
 secr-2.9.0/secr/R/pdot.R                            |   17 
 secr-2.9.0/secr/R/plot.mask.r                       |only
 secr-2.9.0/secr/R/plot.secr.R                       |   12 
 secr-2.9.0/secr/R/predict.secr.R                    |only
 secr-2.9.0/secr/R/randomHabitat.R                   |    9 
 secr-2.9.0/secr/R/rbind.capthist.R                  |    2 
 secr-2.9.0/secr/R/read.traps.R                      |    6 
 secr-2.9.0/secr/R/reduce.R                          |    2 
 secr-2.9.0/secr/R/regionN.R                         |  149 ++++--
 secr-2.9.0/secr/R/score.test.R                      |   11 
 secr-2.9.0/secr/R/secr.design.MS.R                  |   38 +
 secr-2.9.0/secr/R/secr.fit.R                        |  213 ++++-----
 secr-2.9.0/secr/R/secr.test.R                       |only
 secr-2.9.0/secr/R/secrloglik.R                      |  160 +++----
 secr-2.9.0/secr/R/sim.capthist.R                    |   37 +
 secr-2.9.0/secr/R/sim.popn.R                        |   79 +--
 secr-2.9.0/secr/R/sim.secr.R                        |  262 +++++++++---
 secr-2.9.0/secr/R/split.capthist.R                  |   53 ++
 secr-2.9.0/secr/R/suggest.buffer.R                  |   18 
 secr-2.9.0/secr/R/utility.R                         |  362 ++++++++++++++++
 secr-2.9.0/secr/R/verify.R                          |   15 
 secr-2.9.0/secr/data/OVpossum.RData                 |only
 secr-2.9.0/secr/data/deermouse.RData                |binary
 secr-2.9.0/secr/data/hornedlizard.RData             |binary
 secr-2.9.0/secr/data/housemouse.RData               |binary
 secr-2.9.0/secr/data/ovenbird.RData                 |binary
 secr-2.9.0/secr/data/ovensong.RData                 |binary
 secr-2.9.0/secr/data/possum.RData                   |binary
 secr-2.9.0/secr/data/secrdemo.RData                 |binary
 secr-2.9.0/secr/data/skink.RData                    |binary
 secr-2.9.0/secr/data/stoatDNA.RData                 |binary
 secr-2.9.0/secr/inst/doc/secr-datainput.pdf         |binary
 secr-2.9.0/secr/inst/doc/secr-densitysurfaces.pdf   |binary
 secr-2.9.0/secr/inst/doc/secr-finitemixtures.pdf    |binary
 secr-2.9.0/secr/inst/doc/secr-manual.pdf            |binary
 secr-2.9.0/secr/inst/doc/secr-overview.pdf          |binary
 secr-2.9.0/secr/inst/doc/secr-parameterisations.pdf |binary
 secr-2.9.0/secr/inst/doc/secr-polygondetectors.pdf  |binary
 secr-2.9.0/secr/inst/doc/secr-sound.pdf             |binary
 secr-2.9.0/secr/inst/doc/secr-varyingeffort.pdf     |binary
 secr-2.9.0/secr/inst/extdata/OVforest.dbf           |only
 secr-2.9.0/secr/inst/extdata/OVforest.shp           |only
 secr-2.9.0/secr/inst/extdata/OVforest.shx           |only
 secr-2.9.0/secr/inst/extdata/capt.txt               |    2 
 secr-2.9.0/secr/inst/extdata/leftbank.txt           |only
 secr-2.9.0/secr/man/CV.Rd                           |   11 
 secr-2.9.0/secr/man/Dsurface.Rd                     |    7 
 secr-2.9.0/secr/man/OVpossum.Rd                     |only
 secr-2.9.0/secr/man/PG.Rd                           |    2 
 secr-2.9.0/secr/man/addCovariates.Rd                |    7 
 secr-2.9.0/secr/man/autoini.Rd                      |    7 
 secr-2.9.0/secr/man/coulombe.Rd                     |    2 
 secr-2.9.0/secr/man/deermouse.Rd                    |    2 
 secr-2.9.0/secr/man/derivedMS.Rd                    |    8 
 secr-2.9.0/secr/man/details.Rd                      |   22 -
 secr-2.9.0/secr/man/distancetotrap.Rd               |    4 
 secr-2.9.0/secr/man/fx.total.Rd                     |only
 secr-2.9.0/secr/man/fxi.Rd                          |   71 ++-
 secr-2.9.0/secr/man/hcov.Rd                         |    6 
 secr-2.9.0/secr/man/homerange.Rd                    |   26 -
 secr-2.9.0/secr/man/hornedlizard.Rd                 |    2 
 secr-2.9.0/secr/man/make.mask.Rd                    |    2 
 secr-2.9.0/secr/man/model.average.Rd                |    2 
 secr-2.9.0/secr/man/ovenbird.Rd                     |    2 
 secr-2.9.0/secr/man/ovensong.Rd                     |    2 
 secr-2.9.0/secr/man/pdot.Rd                         |    9 
 secr-2.9.0/secr/man/plot.mask.Rd                    |   34 -
 secr-2.9.0/secr/man/pointsInPolygon.Rd              |    6 
 secr-2.9.0/secr/man/popn.Rd                         |    2 
 secr-2.9.0/secr/man/possum.Rd                       |   21 
 secr-2.9.0/secr/man/predict.secr.Rd                 |    2 
 secr-2.9.0/secr/man/predictDsurface.Rd              |    7 
 secr-2.9.0/secr/man/randomHabitat.Rd                |    2 
 secr-2.9.0/secr/man/reduce.capthist.Rd              |    3 
 secr-2.9.0/secr/man/secr-package.Rd                 |    8 
 secr-2.9.0/secr/man/secr.design.MS.Rd               |    4 
 secr-2.9.0/secr/man/secr.fit.Rd                     |   47 +-
 secr-2.9.0/secr/man/secr.test.Rd                    |only
 secr-2.9.0/secr/man/secrtest.Rd                     |only
 secr-2.9.0/secr/man/sim.capthist.Rd                 |   14 
 secr-2.9.0/secr/man/sim.popn.Rd                     |   20 
 secr-2.9.0/secr/man/sim.secr.Rd                     |   32 +
 secr-2.9.0/secr/man/smooths.Rd                      |only
 secr-2.9.0/secr/man/stoatDNA.Rd                     |    2 
 secr-2.9.0/secr/man/strip.legend.Rd                 |only
 secr-2.9.0/secr/man/subset.capthist.Rd              |    8 
 secr-2.9.0/secr/man/utility.Rd                      |only
 secr-2.9.0/secr/src/detectfn.c                      |  434 +++++++++++++++++++-
 secr-2.9.0/secr/src/secr.c                          |  429 ++++++++++---------
 secr-2.9.0/secr/src/secr.h                          |  159 ++++++-
 secr-2.9.0/secr/src/simsecr.c                       |   58 ++
 secr-2.9.0/secr/src/trapping.c                      |  113 ++++-
 secr-2.9.0/secr/src/unmarked.c                      |    1 
 secr-2.9.0/secr/src/utils.c                         |   72 +--
 117 files changed, 2871 insertions(+), 1528 deletions(-)

More information about secr at CRAN
Permanent link

Package testthat updated to version 0.9 with previous version 0.8.1 dated 2014-02-21

Title: Testthat code. Tools to make testing fun :)
Description: A testing package specifically tailored for R that's fun, flexible and easy to set up.
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham

Diff between testthat versions 0.8.1 dated 2014-02-21 and 0.9 dated 2014-09-22

 testthat-0.8.1/testthat/man/is_false.Rd                  |only
 testthat-0.9/testthat/DESCRIPTION                        |   44 ++--
 testthat-0.9/testthat/LICENSE                            |    4 
 testthat-0.9/testthat/MD5                                |  154 +++++++-------
 testthat-0.9/testthat/NAMESPACE                          |   11 -
 testthat-0.9/testthat/R/auto-test.r                      |   50 +++-
 testthat-0.9/testthat/R/colour-text.r                    |    8 
 testthat-0.9/testthat/R/compare.r                        |    2 
 testthat-0.9/testthat/R/describe.r                       |only
 testthat-0.9/testthat/R/expect-that.r                    |    1 
 testthat-0.9/testthat/R/expectation.r                    |   48 ++++
 testthat-0.9/testthat/R/expectations.r                   |  141 +++++++-----
 testthat-0.9/testthat/R/library.r                        |    3 
 testthat-0.9/testthat/R/mock.r                           |only
 testthat-0.9/testthat/R/reporter-minimal.r               |    4 
 testthat-0.9/testthat/R/reporter-stop.r                  |    1 
 testthat-0.9/testthat/R/reporter-summary.r               |    6 
 testthat-0.9/testthat/R/reporter-tap.r                   |    2 
 testthat-0.9/testthat/R/reporter-teamcity.r              |   78 ++++---
 testthat-0.9/testthat/R/test-package.r                   |    2 
 testthat-0.9/testthat/R/test-that.r                      |   81 +++++--
 testthat-0.9/testthat/R/traceback.r                      |   18 -
 testthat-0.9/testthat/R/utils.r                          |   37 +++
 testthat-0.9/testthat/R/watcher.r                        |   18 -
 testthat-0.9/testthat/README.md                          |   14 -
 testthat-0.9/testthat/man/ListReporter-class.Rd          |    3 
 testthat-0.9/testthat/man/MinimalReporter-class.Rd       |    3 
 testthat-0.9/testthat/man/MultiReporter-class.Rd         |    3 
 testthat-0.9/testthat/man/Reporter-class.Rd              |    3 
 testthat-0.9/testthat/man/SilentReporter-class.Rd        |    3 
 testthat-0.9/testthat/man/StopReporter-class.Rd          |    3 
 testthat-0.9/testthat/man/SummaryReporter-class.Rd       |    3 
 testthat-0.9/testthat/man/TapReporter-class.Rd           |    3 
 testthat-0.9/testthat/man/TeamcityReporter-class.Rd      |    3 
 testthat-0.9/testthat/man/auto_test.Rd                   |    9 
 testthat-0.9/testthat/man/auto_test_package.Rd           |    7 
 testthat-0.9/testthat/man/colourise.Rd                   |   10 
 testthat-0.9/testthat/man/compare_state.Rd               |    5 
 testthat-0.9/testthat/man/context.Rd                     |    4 
 testthat-0.9/testthat/man/describe.Rd                    |only
 testthat-0.9/testthat/man/dir_state.Rd                   |   10 
 testthat-0.9/testthat/man/equals.Rd                      |   40 +--
 testthat-0.9/testthat/man/equals_reference.Rd            |only
 testthat-0.9/testthat/man/evaluate_promise.Rd            |   11 -
 testthat-0.9/testthat/man/expect-compare.Rd              |   37 +--
 testthat-0.9/testthat/man/expect_that.Rd                 |   16 -
 testthat-0.9/testthat/man/expectation.Rd                 |   12 -
 testthat-0.9/testthat/man/fail.Rd                        |    3 
 testthat-0.9/testthat/man/find_reporter.Rd               |    3 
 testthat-0.9/testthat/man/gives_warning.Rd               |   39 +--
 testthat-0.9/testthat/man/has_names.Rd                   |   41 +--
 testthat-0.9/testthat/man/is_a.Rd                        |   32 +-
 testthat-0.9/testthat/man/is_equivalent_to.Rd            |   34 +--
 testthat-0.9/testthat/man/is_identical_to.Rd             |   35 +--
 testthat-0.9/testthat/man/is_null.Rd                     |   23 +-
 testthat-0.9/testthat/man/is_true.Rd                     |   38 ++-
 testthat-0.9/testthat/man/library_if_available.Rd        |    5 
 testthat-0.9/testthat/man/make_expectation.Rd            |    8 
 testthat-0.9/testthat/man/matches.Rd                     |   38 +--
 testthat-0.9/testthat/man/not.Rd                         |    3 
 testthat-0.9/testthat/man/prints_text.Rd                 |   30 +-
 testthat-0.9/testthat/man/reporter-accessors.Rd          |    5 
 testthat-0.9/testthat/man/safe_digest.Rd                 |    3 
 testthat-0.9/testthat/man/shows_message.Rd               |   39 +--
 testthat-0.9/testthat/man/skip.Rd                        |only
 testthat-0.9/testthat/man/source_dir.Rd                  |    9 
 testthat-0.9/testthat/man/takes_less_than.Rd             |   15 -
 testthat-0.9/testthat/man/test_dir.Rd                    |   14 -
 testthat-0.9/testthat/man/test_env.Rd                    |    1 
 testthat-0.9/testthat/man/test_file.Rd                   |    7 
 testthat-0.9/testthat/man/test_package.Rd                |   26 +-
 testthat-0.9/testthat/man/test_that.Rd                   |    7 
 testthat-0.9/testthat/man/testthat.Rd                    |only
 testthat-0.9/testthat/man/throws_error.Rd                |   32 +-
 testthat-0.9/testthat/man/watch.Rd                       |   20 -
 testthat-0.9/testthat/man/with_mock.Rd                   |only
 testthat-0.9/testthat/src                                |only
 testthat-0.9/testthat/tests/testthat/one.rds             |only
 testthat-0.9/testthat/tests/testthat/test-compare.r      |   13 +
 testthat-0.9/testthat/tests/testthat/test-context.r      |   65 +++--
 testthat-0.9/testthat/tests/testthat/test-describe.r     |only
 testthat-0.9/testthat/tests/testthat/test-expectations.r |    5 
 testthat-0.9/testthat/tests/testthat/test-mock.r         |only
 testthat-0.9/testthat/tests/testthat/test-watcher.r      |  163 +++++++--------
 84 files changed, 956 insertions(+), 715 deletions(-)

More information about testthat at CRAN
Permanent link

New package pingr with initial version 1.0.0
Package: pingr
Title: Check If a Remote Computer is Up
Version: 1.0.0
Authors@R: "Gabor Csardi [aut,cre]"
Description: Check if a remote computer is up. It can either just call the system ping command, or check a specified TCP port.
License: MIT + file LICENSE
LazyData: true
URL: https://github.com/gaborcsardi/pingr
BugReports: https://github.com/gaborcsardi/pingr/issues
Suggests: testthat
Packaged: 2014-09-22 18:46:33 UTC; gaborcsardi
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-22 21:26:59

More information about pingr at CRAN
Permanent link

New package mpath with initial version 0.1-14
Package: mpath
Title: Regularized Linear Models
Version: 0.1-14
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
Imports: MASS,glmnet,pscl,numDeriv
Depends: methods
License: GPL-2
Packaged: 2014-09-22 17:32:25.925 UTC; zhu
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-22 21:27:03

More information about mpath at CRAN
Permanent link

Package sglasso updated to version 1.1-0 with previous version 1.0-1 dated 2014-06-17

Title: Lasso method for RCON(V,E) models
Description: RCON(V, E) models (HÝjsgaard, et al.,2008) are a kind of restriction of the Gaussian Graphical Models defined by a set of equality constraints on the entries of the concentration matrix. sglasso package implements the structured graphical lasso (sglasso) estimator proposed in Abbruzzo et al. (2014) for the weighted l1-penalized RCON(V, E) model. Two cyclic coordinate algorithms are implemented to compute the sglasso estimator, i.e., a cyclic coordinate minimization (CCM) algorithm and a cyclic coordinate descent (CCD) algorithm.
Author: Luigi Augugliaro
Maintainer: Luigi Augugliaro

Diff between sglasso versions 1.0-1 dated 2014-06-17 and 1.1-0 dated 2014-09-22

 ChangeLog              |   12 ++++++++++--
 DESCRIPTION            |   11 ++++++-----
 MD5                    |   32 +++++++++++++++++++-------------
 R/fglasso.R            |only
 R/fglasso_model2mask.R |only
 R/klcv.R               |only
 R/loglik.R             |    5 ++---
 R/mask2Te.R            |    4 ++--
 R/sglasso.R            |   26 ++++++++++++++++++--------
 man/Kh.Rd              |    5 ++---
 man/dglars-internal.Rd |    3 ++-
 man/fglasso.Rd         |only
 man/klcv.Rd            |only
 man/loglik.Rd          |    5 ++---
 man/plot.sglasso.Rd    |    5 ++---
 man/sglasso-package.Rd |   11 ++++++-----
 man/sglasso.Rd         |   19 ++++++++++---------
 man/summary.sglasso.Rd |    5 ++---
 src/Makevars           |    2 +-
 src/gdf_fun.f90        |only
 20 files changed, 84 insertions(+), 61 deletions(-)

More information about sglasso at CRAN
Permanent link

New package GENLIB with initial version 1.0
Package: GENLIB
Type: Package
Title: Genealogical Data Analysis
Version: 1.0
Date: 2012-04-04
Authors@R: c( person("Louis", "Houde", role="aut"), person("Jean-Francois", "Lefebvre", role="aut", email="mroygagn@uottawa.ca"), person("Valery", "Roy-Lagace", role="aut"), person("Sebastien", "Lemieux", role="aut"), person("Michael J.", "Fromberger", role="ctb"), person("Marie-Helene", "Roy-Gagnon", role="cre", email="jf_lef@yahoo.ca"))
Description: Genealogical data analysis including descriptive statistics (e.g., kinship and inbreeding coefficients) and gene-dropping simulations.
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 3.0), Rcpp (>= 0.9.10)
Imports: kinship2, methods, bootstrap, Matrix, lattice, quadprog, foreach, parallel, doParallel
LinkingTo: Rcpp
Packaged: 2014-09-22 14:22:08 UTC; sainte-justine\lefjea01
Author: Louis Houde [aut], Jean-Francois Lefebvre [aut], Valery Roy-Lagace [aut], Sebastien Lemieux [aut], Michael J. Fromberger [ctb], Marie-Helene Roy-Gagnon [cre]
Maintainer: Marie-Helene Roy-Gagnon
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-22 18:46:51

More information about GENLIB at CRAN
Permanent link

New package documair with initial version 0.6-0
Package: documair
Version: 0.6-0
Date: 2014-09-06
Type: Package
Title: Automatic Documentation for R packages
Author: Jean-Baptiste Denis , Regis Pouillot , Kien Kieu
Maintainer: Jean-Baptiste Denis
Description: Production of R packages from tagged comments introduced within the code and a minimum of additional documentation files.
License: GPL (>= 2.15)
Packaged: 2014-09-17 09:35:38 UTC; rforge
Repository: CRAN
Repository/R-Forge/Project: riskassessment
Repository/R-Forge/Revision: 283
Repository/R-Forge/DateTimeStamp: 2014-09-17 09:16:39
Date/Publication: 2014-09-22 17:22:20
NeedsCompilation: yes

More information about documair at CRAN
Permanent link

Package proxy updated to version 0.4-13 with previous version 0.4-12 dated 2014-01-15

Title: Distance and Similarity Measures
Description: Provides an extensible framework for the efficient calculation of auto- and cross-proximities, along with implementations of the most popular ones.
Author: David Meyer [aut, cre], Christian Buchta [aut]
Maintainer: David Meyer

Diff between proxy versions 0.4-12 dated 2014-01-15 and 0.4-13 dated 2014-09-22

 DESCRIPTION           |    8 ++++----
 MD5                   |   12 ++++++------
 R/dissimilarities.R   |    8 ++++++--
 R/dist.R              |   15 ++++++++++++---
 build/vignette.rds    |binary
 inst/doc/overview.pdf |binary
 tests/apply.Rout.save |   26 ++++++++++++++------------
 7 files changed, 42 insertions(+), 27 deletions(-)

More information about proxy at CRAN
Permanent link

Package predictmeans updated to version 0.99 with previous version 0.98 dated 2014-09-03

Title: Calculate Predicted Means for Linear Models
Description: This package provides functions to diagnose and make inferences from various linear models, such as those obtained from 'aov', 'lm', 'glm', 'gls', 'lme', and 'lmer'. Inferences include predicted means and standard errors, contrasts, multiple comparisons, permutation tests and graphs.
Author: Dongwen Luo, Siva Ganesh and John Koolaard
Maintainer: Dongwen Luo

Diff between predictmeans versions 0.98 dated 2014-09-03 and 0.99 dated 2014-09-22

 DESCRIPTION                 |    8 +-
 MD5                         |   12 +--
 NAMESPACE                   |    4 -
 R/Kmatrix.R                 |    4 -
 R/covariatemeans.R          |  161 ++++++++++++++++++++++++--------------------
 inst/NEWS                   |    5 +
 man/predictmeans-package.Rd |    2 
 7 files changed, 110 insertions(+), 86 deletions(-)

More information about predictmeans at CRAN
Permanent link

Package flexsurv updated to version 0.5 with previous version 0.3 dated 2014-01-20

Title: Flexible parametric survival and multi-state models
Description: Flexible parametric models for time-to-event data, including the Royston-Parmar spline model, generalized gamma and generalized F distributions. Any user-defined parametric distribution can be fitted, given at least an R function defining the probability density or hazard. There are also tools for fitting and predicting from fully parametric multi-state models.
Author: Christopher Jackson
Maintainer: Christopher Jackson

Diff between flexsurv versions 0.3 dated 2014-01-20 and 0.5 dated 2014-09-22

 flexsurv-0.3/flexsurv/tests/flexsurv.R               |only
 flexsurv-0.3/flexsurv/tests/spline.R                 |only
 flexsurv-0.3/flexsurv/tests/utils.R                  |only
 flexsurv-0.5/flexsurv/DESCRIPTION                    |   22 
 flexsurv-0.5/flexsurv/MD5                            |   86 -
 flexsurv-0.5/flexsurv/NAMESPACE                      |  135 +
 flexsurv-0.5/flexsurv/R/GenF.R                       |  420 ++---
 flexsurv-0.5/flexsurv/R/GenGamma.R                   |  356 +---
 flexsurv-0.5/flexsurv/R/Gompertz.R                   |  196 +-
 flexsurv-0.5/flexsurv/R/custom.R                     |only
 flexsurv-0.5/flexsurv/R/deriv.R                      |  181 +-
 flexsurv-0.5/flexsurv/R/flexsurvreg.R                | 1466 +++++++++++--------
 flexsurv-0.5/flexsurv/R/fracpoly.R                   |only
 flexsurv-0.5/flexsurv/R/mstate.R                     |only
 flexsurv-0.5/flexsurv/R/spline.R                     |  580 ++++---
 flexsurv-0.5/flexsurv/R/utils.R                      |  291 +++
 flexsurv-0.5/flexsurv/build                          |only
 flexsurv-0.5/flexsurv/data/bc.rda                    |only
 flexsurv-0.5/flexsurv/data/bosms3.rda                |only
 flexsurv-0.5/flexsurv/data/bosms4.rda                |only
 flexsurv-0.5/flexsurv/inst/NEWS                      |  132 +
 flexsurv-0.5/flexsurv/inst/doc                       |only
 flexsurv-0.5/flexsurv/man/GenF.Rd                    |  218 +-
 flexsurv-0.5/flexsurv/man/GenF.orig.Rd               |  172 +-
 flexsurv-0.5/flexsurv/man/GenGamma.Rd                |  220 +-
 flexsurv-0.5/flexsurv/man/GenGamma.orig.Rd           |  188 +-
 flexsurv-0.5/flexsurv/man/Gompertz.Rd                |  174 +-
 flexsurv-0.5/flexsurv/man/Survspline.Rd              |  164 +-
 flexsurv-0.5/flexsurv/man/basis.Rd                   |only
 flexsurv-0.5/flexsurv/man/bc.Rd                      |   86 -
 flexsurv-0.5/flexsurv/man/bos.Rd                     |only
 flexsurv-0.5/flexsurv/man/flexsurv-package.Rd        |  208 +-
 flexsurv-0.5/flexsurv/man/flexsurvreg.Rd             |  663 +++++---
 flexsurv-0.5/flexsurv/man/flexsurvspline.Rd          |  440 ++---
 flexsurv-0.5/flexsurv/man/hazard.Rd                  |only
 flexsurv-0.5/flexsurv/man/lines.flexsurvreg.Rd       |  104 -
 flexsurv-0.5/flexsurv/man/model.frame.flexsurvreg.Rd |only
 flexsurv-0.5/flexsurv/man/msfit.flexsurvreg.Rd       |only
 flexsurv-0.5/flexsurv/man/normboot.flexsurvreg.Rd    |only
 flexsurv-0.5/flexsurv/man/plot.flexsurvreg.Rd        |  227 +-
 flexsurv-0.5/flexsurv/man/pmatrix.fs.Rd              |only
 flexsurv-0.5/flexsurv/man/pmatrix.simfs.Rd           |only
 flexsurv-0.5/flexsurv/man/qgeneric.Rd                |  120 -
 flexsurv-0.5/flexsurv/man/sim.fmsm.Rd                |only
 flexsurv-0.5/flexsurv/man/summary.flexsurvreg.Rd     |  241 +--
 flexsurv-0.5/flexsurv/man/totlos.fs.Rd               |only
 flexsurv-0.5/flexsurv/man/totlos.simfs.Rd            |only
 flexsurv-0.5/flexsurv/man/unroll.function.Rd         |only
 flexsurv-0.5/flexsurv/tests/test_base.R              |only
 flexsurv-0.5/flexsurv/tests/testthat                 |only
 flexsurv-0.5/flexsurv/vignettes                      |only
 51 files changed, 4021 insertions(+), 3069 deletions(-)

More information about flexsurv at CRAN
Permanent link

New package fAssets with initial version 3011.82
Package: fAssets
Title: Rmetrics - Analysing and Modelling Financial Assets
Date: 2014-09-17
Version: 3011.82
Author: Rmetrics Core Team, Diethelm Wuertz [aut], Tobias Setz [cre] Yohan Chalabi [ctb]
Maintainer: Tobias Setz
Description: Environment for teaching "Financial Engineering and Computational Finance".
Depends: R (>= 2.15.1), timeDate, timeSeries, fBasics
Imports: fMultivar, robustbase, MASS, sn
Suggests: methods, mnormt, ecodist, mvnormtest, energy, RUnit
Note: SEVERAL PARTS ARE STILL PRELIMINARY AND MAY BE CHANGED IN THE FUTURE. THIS TYPICALLY INCLUDES FUNCTION AND ARGUMENT NAMES, AS WELL AS DEFAULTS FOR ARGUMENTS AND RETURN VALUES.
LazyData: yes
License: GPL (>= 2)
URL: https://www.rmetrics.org
Packaged: 2014-09-22 10:28:15 UTC; Tobi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-22 14:10:47

More information about fAssets at CRAN
Permanent link

Package dendextend updated to version 0.17.5 with previous version 0.17.1 dated 2014-08-19

Title: Extending R's dendrogram functionality
Description: The dendextend package offers a set of functions for extending dendrogram objects in R, letting you visualize and compare trees of hierarchical clusterings. You can (1) Adjust a trees graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different dendrograms to one another.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com), Gavin Simpson [ctb], Gregory Jefferis [ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Yoav Benjamini [ths]
Maintainer: Tal Galili

Diff between dendextend versions 0.17.1 dated 2014-08-19 and 0.17.5 dated 2014-09-22

 dendextend-0.17.1/dendextend/man/plot.dendlist.Rd                   |only
 dendextend-0.17.1/dendextend/tests/test-all.R                       |only
 dendextend-0.17.5/dendextend/DESCRIPTION                            |   14 
 dendextend-0.17.5/dendextend/MD5                                    |   54 -
 dendextend-0.17.5/dendextend/NAMESPACE                              |    3 
 dendextend-0.17.5/dendextend/NEWS                                   |   61 +
 dendextend-0.17.5/dendextend/R/attr_access.R                        |   92 +
 dendextend-0.17.5/dendextend/R/color_branches.R                     |    8 
 dendextend-0.17.5/dendextend/R/cor_bakers_gamma.R                   |  513 +++++-----
 dendextend-0.17.5/dendextend/R/dendlist.R                           |   64 -
 dendextend-0.17.5/dendextend/R/labels.R                             |    4 
 dendextend-0.17.5/dendextend/R/set.dendrogram.R                     |   11 
 dendextend-0.17.5/dendextend/R/zzz.R                                |   30 
 dendextend-0.17.5/dendextend/README.md                              |    6 
 dendextend-0.17.5/dendextend/TODO                                   |   75 +
 dendextend-0.17.5/dendextend/build/vignette.rds                     |binary
 dendextend-0.17.5/dendextend/inst/doc/introduction.R                |    5 
 dendextend-0.17.5/dendextend/inst/doc/introduction.Rmd              |   80 +
 dendextend-0.17.5/dendextend/inst/doc/introduction.html             |  153 ++
 dendextend-0.17.5/dendextend/inst/tests/test-cutree.dendrogram.R    |   86 -
 dendextend-0.17.5/dendextend/inst/tests/test-labels-assign.R        |  397 +++----
 dendextend-0.17.5/dendextend/inst/tests/test-labels_colors.R        |   35 
 dendextend-0.17.5/dendextend/man/assign_values_to_leaves_edgePar.Rd |only
 dendextend-0.17.5/dendextend/man/color_labels.Rd                    |    3 
 dendextend-0.17.5/dendextend/man/cor_bakers_gamma.Rd                |   15 
 dendextend-0.17.5/dendextend/man/dendlist.Rd                        |   14 
 dendextend-0.17.5/dendextend/man/order.dendrogram-assign.Rd         |    4 
 dendextend-0.17.5/dendextend/man/set.Rd                             |    3 
 dendextend-0.17.5/dendextend/tests/test-all.r                       |only
 dendextend-0.17.5/dendextend/vignettes/introduction.Rmd             |   80 +
 30 files changed, 1156 insertions(+), 654 deletions(-)

More information about dendextend at CRAN
Permanent link

Package rpf updated to version 0.39 with previous version 0.38 dated 2014-09-04

Title: Response Probability Functions
Description: The purpose of this package is to factor out logic and math common to Item Factor Analysis fitting, diagnostics, and analysis. It is envisioned as core support code suitable for more specialized IRT packages to build upon. Complete access to optimized C functions are made available with R_RegisterCCallable.
Author: Joshua Pritikin [cre, aut], Jonathan Weeks [ctb], Li Cai [ctb], Carrie Houts [ctb], Phil Chalmers [ctb]
Maintainer: Joshua Pritikin

Diff between rpf versions 0.38 dated 2014-09-04 and 0.39 dated 2014-09-22

 rpf-0.38/rpf/inst/tests/test-plink.R   |only
 rpf-0.39/rpf/DESCRIPTION               |   12 ++++----
 rpf-0.39/rpf/MD5                       |    5 +--
 rpf-0.39/rpf/inst/doc/diagnostics.html |   46 ++++++++++++++++-----------------
 4 files changed, 31 insertions(+), 32 deletions(-)

More information about rpf at CRAN
Permanent link

Package RcppArmadillo updated to version 0.4.450.1.0 with previous version 0.4.400.0 dated 2014-08-19

Title: Rcpp Integration for Armadillo Templated Linear Algebra Library
Description: R and Armadillo integration using Rcpp Armadillo is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. A delayed evaluation approach is employed (during compile time) to combine several operations into one, and to reduce (or eliminate) the need for temporaries. This is accomplished through recursive templates and template meta-programming. This library is useful if C++ has been decided as the language of choice (due to speed and/or integration capabilities), rather than another language. The RcppArmadillo package includes the header files from the templated Armadillo library. Thus users do not need to install Armadillo itself in order to use RcppArmadillo. This Armadillo integration provides a nice illustration of the capabilities of the Rcpp package for seamless R and C++ integration. Armadillo is licensed under the MPL 2.0, while RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel

Diff between RcppArmadillo versions 0.4.400.0 dated 2014-08-19 and 0.4.450.1.0 dated 2014-09-22

 ChangeLog                                           |   50 ++++
 DESCRIPTION                                         |   12 -
 MD5                                                 |   62 +++--
 R/RcppArmadillo.package.skeleton.R                  |   44 ++--
 R/inline.R                                          |    2 
 inst/NEWS.Rd                                        |   27 ++
 inst/doc/RcppArmadillo-intro.pdf                    |binary
 inst/doc/RcppArmadillo-unitTests.pdf                |binary
 inst/include/RcppArmadillo/Alt_R_RNG.h              |only
 inst/include/RcppArmadilloConfig.h                  |    8 
 inst/include/RcppArmadilloForward.h                 |   11 -
 inst/include/armadillo                              |   11 -
 inst/include/armadillo_bits/Mat_bones.hpp           |   11 -
 inst/include/armadillo_bits/Mat_meat.hpp            |   20 +
 inst/include/armadillo_bits/Proxy.hpp               |  213 ++++++++++++++++----
 inst/include/armadillo_bits/arma_rng.hpp            |   58 ++++-
 inst/include/armadillo_bits/arma_version.hpp        |    6 
 inst/include/armadillo_bits/compiler_setup.hpp      |    2 
 inst/include/armadillo_bits/fn_elem.hpp             |    8 
 inst/include/armadillo_bits/fn_norm.hpp             |    6 
 inst/include/armadillo_bits/fn_sort_index.hpp       |  208 ++++++++++++-------
 inst/include/armadillo_bits/fn_symmat.hpp           |   38 +++
 inst/include/armadillo_bits/forward_bones.hpp       |    3 
 inst/include/armadillo_bits/gmm_diag_bones.hpp      |   37 +--
 inst/include/armadillo_bits/gmm_diag_meat.hpp       |  117 +++++++++-
 inst/include/armadillo_bits/op_symmat_bones.hpp     |   15 +
 inst/include/armadillo_bits/op_symmat_meat.hpp      |   88 +++++---
 inst/include/armadillo_bits/operator_cube_minus.hpp |    4 
 inst/include/armadillo_bits/operator_minus.hpp      |    4 
 inst/include/armadillo_bits/xtrans_mat_bones.hpp    |only
 inst/include/armadillo_bits/xtrans_mat_meat.hpp     |only
 inst/skeleton/rcpparma_hello_world.Rd               |only
 inst/unitTests/cpp/rng.cpp                          |only
 inst/unitTests/runit.rng.R                          |only
 man/RcppArmadillo-package.Rd                        |   93 +++-----
 35 files changed, 821 insertions(+), 337 deletions(-)

More information about RcppArmadillo at CRAN
Permanent link

Package RandomFields updated to version 3.0.42 with previous version 3.0.35 dated 2014-08-12

Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields; conditional simulation; kriging; maximum likelihood estimation
Author: Martin Schlather [aut, cre], Alexander Malinowski [aut], Marco Oesting [aut], Daphne Boecker [aut], Kirstin Strokorb [aut], Sebastian Engelke [aut], Johannes Martini [aut], Felix Ballani [aut], Peter Menck [aut], Sebastian Gross [aut], Ulrike Ober [ctb], Katharina Burmeister [ctb], Juliane Manitz [ctb], Paulo Ribeiro [ctb], Richard Singleton [ctb], Ben Pfaff [ctb], R Core Team [ctb]
Maintainer: Martin Schlather

Diff between RandomFields versions 3.0.35 dated 2014-08-12 and 3.0.42 dated 2014-09-22

 DESCRIPTION                           |   10 
 MD5                                   |  252 +++++++++--------
 NAMESPACE                             |   54 ++-
 R/Class.R                             |   24 -
 R/Crossvalidation.R                   |   12 
 R/D.H.R                               |   75 ++---
 R/Methods-RFestimation.R              |   12 
 R/Methods-RFmodel.R                   |   47 ++-
 R/Methods-RFsp.R                      |  351 ++++--------------------
 R/Methods-aux.R                       |only
 R/RF_GLOBALS.R                        |    2 
 R/RFfit.R                             |    2 
 R/RFgui.R                             |  497 ++++++++++++++++------------------
 R/RFsp-plots.R                        |  110 ++++---
 R/RMConvenienceModels.R               |    8 
 R/RMmodels.R                          |  148 +++++++++-
 R/auxiliary.R                         |   92 ++++--
 R/convert.R                           |   60 ++--
 R/empvario.R                          |  132 ++++-----
 R/fitgauss.R                          |  236 +++++++++-------
 R/generatemodels.R                    |   67 +---
 R/getNset.R                           |   23 -
 R/internal_use.R                      |  100 +++---
 R/kriging.R                           |  207 +++++++++-----
 R/rf.R                                |   34 +-
 build                                 |only
 cleanup                               |only
 inst                                  |only
 man/BRspecific.Rd                     |    4 
 man/Baysian.Rd                        |    7 
 man/Changings.Rd                      |only
 man/Circulant.Rd                      |   36 +-
 man/Constants.Rd                      |    2 
 man/Gaussian.Rd                       |   16 -
 man/MajorRevisions.Rd                 |    3 
 man/Maxstable.Rd                      |   18 -
 man/Print.Rd                          |   12 
 man/RF.Rd                             |   45 +--
 man/RFempVariog-class.Rd              |    4 
 man/RFfit-class.Rd                    |   21 -
 man/RFgetMethodNames.Rd               |   10 
 man/RFgetModelInfo.Rd                 |    5 
 man/RFgetModelNames.Rd                |    4 
 man/RFinterpolate.Rd                  |    3 
 man/RFoldstyle.Rd                     |   10 
 man/RFoptions.Rd                      |  386 +++++++++++++++++---------
 man/RFsimulate.Rd                     |    7 
 man/RFsimulateAdvanced.Rd             |    5 
 man/RFsp-class.Rd                     |    3 
 man/RFspatialGridDataFrame-class.Rd   |   17 -
 man/RFspatialPointsDataFrame-class.Rd |   16 -
 man/RMS.Rd                            |    4 
 man/RMangle.Rd                        |   31 +-
 man/RMaskey.Rd                        |   73 ++--
 man/RMbr2.Rd                          |    8 
 man/RMbr2bg.Rd                        |    8 
 man/RMbrownresnick.Rd                 |   17 -
 man/RMcoxisham.Rd                     |    8 
 man/RMcutoff.Rd                       |    9 
 man/RMdagum.Rd                        |    2 
 man/RMexp.Rd                          |   23 +
 man/RMexponential.Rd                  |    5 
 man/RMgauss.Rd                        |   12 
 man/RMgencauchy.Rd                    |   13 
 man/RMgengneiting.Rd                  |    2 
 man/RMgneiting.Rd                     |   46 ++-
 man/RMintern.Rd                       |   43 +-
 man/RMmatern.Rd                       |   53 ++-
 man/RMmodel-class.Rd                  |   14 
 man/RMmodel.Rd                        |    2 
 man/RMmodelExt-class.Rd               |    3 
 man/RMmodelsAdvanced.Rd               |   40 +-
 man/RMmqam.Rd                         |    5 
 man/RMmult.Rd                         |   10 
 man/RMnsst.Rd                         |    6 
 man/RMpoissonpoly.Rd                  |   35 ++
 man/RMqam.Rd                          |    6 
 man/RMrational.Rd                     |    2 
 man/RMstable.Rd                       |   41 +-
 man/RMstp.Rd                          |    9 
 man/RMtbm.Rd                          |   96 +++---
 man/RMuser.Rd                         |    9 
 man/RP.Rd                             |    5 
 man/RPgauss.Rd                        |    9 
 man/RPopitz.Rd                        |only
 man/RPt.Rd                            |only
 man/RR.Rd                             |   16 -
 man/RandomFields.Rd                   |   70 +++-
 man/Tbm.Rd                            |  255 +++++++++--------
 man/obsolete.Rd                       |   18 -
 man/papers.Rd                         |    6 
 man/papers.jss14.Rd                   |    6 
 man/plot-method.Rd                    |   16 -
 man/sp2RF.Rd                          |only
 src/Brown.cc                          |    6 
 src/D.H.cc                            |  247 ++++++++++------
 src/Families.cc                       |    4 
 src/Gneiting.cc                       |   34 +-
 src/Huetchen.cc                       |    5 
 src/InternalCov.cc                    |   25 -
 src/KeyInfo.cc                        |   23 +
 src/MLE.cc                            |    6 
 src/Primitive.cc                      |  337 ++++++++++++++++-------
 src/RF.h                              |  204 ++++++++++---
 src/RandomFields.h                    |   59 +---
 src/auxiliary.cc                      |   62 ++--
 src/auxiliary.h                       |   21 -
 src/basic.h                           |    4 
 src/circulant.cc                      |   77 +++--
 src/direct.cc                         |   12 
 src/empvario.cc                       |    3 
 src/extremes.cc                       |   70 +++-
 src/fftVario.cc                       |  111 ++++---
 src/gauss.cc                          |   87 ++++-
 src/getNset.cc                        |  212 ++++++++------
 src/initNerror.cc                     |  183 ++++++++----
 src/metropolis.cc                     |   10 
 src/nugget.cc                         |    4 
 src/operator.cc                       |   54 ++-
 src/plusmalS.cc                       |   71 ++--
 src/primitive.h                       |    4 
 src/randomshape.h                     |    6 
 src/sequential.cc                     |   10 
 src/simu.cc                           |   35 +-
 src/startGetNset.cc                   |   56 ++-
 src/tbm.cc                            |   46 +--
 src/trend.cc                          |   25 +
 src/userinterfaces.cc                 |  423 ++++++++++++++++++----------
 vignettes                             |only
 129 files changed, 4052 insertions(+), 2709 deletions(-)

More information about RandomFields at CRAN
Permanent link

Package polysat updated to version 1.3-3 with previous version 1.3-2 dated 2013-09-06

Title: Tools for Polyploid Microsatellite Analysis
Description: polysat is a collection of tools to handle microsatellite data of any ploidy (and samples of mixed ploidy) where allele copy number is not known in partially heterozygous genotypes. It can import and export data in ABI GeneMapper, Structure, ATetra, Tetrasat/Tetra, GenoDive, SPAGeDi, POPDIST, STRand, and binary presence/absence formats. It can calculate pairwise distances between individuals using a stepwise mutation model or infinite alleles model, with or without taking ploidies and allele frequencies into account. These distances can be used for the calculation of clonal diversity statistics or used for further analysis in R. Allelic diversity statistics are also available. polysat can assist the user in estimating the ploidy of samples, and lastly it can estimate allele frequencies in populations, calculate pairwise Fst values based on those frequencies, and export allele frequencies to SPAGeDi and adegenet.
Author: Lindsay V. Clark
Maintainer: "Lindsay V. Clark"

Diff between polysat versions 1.3-2 dated 2013-09-06 and 1.3-3 dated 2014-09-22

 DESCRIPTION                        |   16 -
 MD5                                |   44 +++--
 NAMESPACE                          |    1 
 NEWS                               |   41 ++++
 R/classes_generics_methods.R       |    9 -
 R/dataexport.R                     |    3 
 R/dataimport.R                     |   27 ++-
 R/individual_distance.R            |    6 
 R/population_stats.R               |    2 
 build                              |only
 inst/doc/polysattutorial.R         |  310 ++++---------------------------------
 inst/doc/polysattutorial.Rnw       |   28 +--
 inst/doc/polysattutorial.pdf       |binary
 inst/extdata/ATetraExample.txt     |only
 inst/extdata/GeneMapperCBA15.txt   |only
 inst/extdata/GeneMapperCBA23.txt   |only
 inst/extdata/GeneMapperCBA28.txt   |only
 inst/extdata/GeneMapperExample.txt |only
 inst/extdata/POPDISTexample1.txt   |only
 inst/extdata/POPDISTexample2.txt   |only
 inst/extdata/STRandExample.txt     |only
 inst/extdata/dominantExample.txt   |only
 inst/extdata/genodiveExample.txt   |only
 inst/extdata/spagediExample.txt    |only
 inst/extdata/structureExample.txt  |only
 inst/extdata/tetrasatExample.txt   |only
 man/assignClones.Rd                |    8 
 man/read.STRand.Rd                 |    6 
 man/read.Structure.Rd              |   13 +
 vignettes/polysattutorial.Rnw      |   28 +--
 30 files changed, 209 insertions(+), 333 deletions(-)

More information about polysat at CRAN
Permanent link

New package mpmi with initial version 0.41
Package: mpmi
Type: Package
Title: Mixed-pair mutual information estimators
Version: 0.41
Date: 2014-22-09
Author: Chris Pardy
Maintainer: Chris Pardy
Description: Uses a kernel smoothing approach to calculate Mutual Information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Uses a nonparametric bias correction giving Bias Corrected Mutual Information (BCMI). Implemented efficiently in Fortran 95 with OpenMP and suited to large genomic datasets.
License: GPL-3
URL: http://r-forge.r-project.org/projects/mpmi/
Depends: KernSmooth
Packaged: 2014-09-22 03:35:34 UTC; cp
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-22 07:59:19

More information about mpmi at CRAN
Permanent link

Package maps updated to version 2.3-9 with previous version 2.3-7 dated 2014-06-03

Title: Draw Geographical Maps
Description: Display of maps. Projection code and larger maps are in separate packages (mapproj and mapdata).
Author: Original S code by Richard A. Becker and Allan R. Wilks. R version by Ray Brownrigg . Enhancements by Thomas P Minka
Maintainer: Ray Brownrigg

Diff between maps versions 2.3-7 dated 2014-06-03 and 2.3-9 dated 2014-09-22

 DESCRIPTION           |    8 ++++----
 MD5                   |    6 +++---
 R/misc.r              |   14 +++++++-------
 data/world.cities.rda |binary
 4 files changed, 14 insertions(+), 14 deletions(-)

More information about maps at CRAN
Permanent link

New package IBrokers with initial version 0.9-12
Package: IBrokers
Type: Package
Title: R API to Interactive Brokers Trader Workstation
Version: 0.9-12
Date: 2014-09-22
Depends: xts, zoo
Author: Jeffrey A. Ryan
Maintainer: Joshua M. Ulrich
Description: Provides native R access to Interactive Brokers Trader Workstation API.
License: GPL-3
Packaged: 2014-09-22 02:44:36 UTC; josh
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-22 07:59:21

More information about IBrokers at CRAN
Permanent link

Package DescTools updated to version 0.99.8.1 with previous version 0.99.8 dated 2014-09-20

Title: Tools for descriptive statistics
Description: DescTools contains a bunch of basic statistic functions and convenience wrappers for efficiently describing data, creating specific plots, doing reports using MS Word, Excel or PowerPoint. The package's intention is to offer a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'camel style' was consequently applied to functions borrowed from contributed R packages as well.
Author: Andri Signorell. Includes R source code and/or documentation previously published by (in alphabetical order): Nanina Anderegg, Tomas Aragon, Antti Arppe, Adrian Baddeley, Ben Bolker, Frederico Caeiro, Stephane Champely, Daniel Chessel, Leanne Chhay, Michael Dewey, Harold C. Doran, Stephane Dray, Charles Dupont, Jeff Enos, Claus Ekstrom, Martin Elff, John Fox, Tal Galili, Matthias Gamer, Joseph L. Gastwirth, Yulia R. Gel, Juergen Gross, Gabor Grothendieck, Frank E. Harrell Jr, Michael Hoehle, Christian W. Hoffmann, Markus Huerzeler, Wallace W. Hui, Rob J. Hyndman, Pablo J. Villacorta Iglesias, Matthias Kohl, Mikko Korpela, Detlew Labes, Friederich Leisch, Jim Lemon, Martin Maechler, Arni Magnusson, Daniel Malter, George Marsaglia, John Marsaglia, Alina Matei, David Meyer, Weiwen Miao, Yongyi Min, Markus Naepflin, Daniel Navarro, Klaus Nordhausen, Derek Ogle, Nick Parsons, Sandrine Pavoine, Roland Rapold, William Revelle, Tyler Rinker, Caroline Rodriguez, Venkatraman E. Seshan, Greg Snow, Michael Smithson, Werner A. Stahel, Yves Tille, Adrian Trapletti, Kevin Ushey, Jeremy VanDerWal, Bill Venables, John Verzani, Gregory R. Warnes, Stefan Wellek, Peter Wolf, Daniel Wollschlaeger, Achim Zeileis
Maintainer: Andri Signorell

Diff between DescTools versions 0.99.8 dated 2014-09-20 and 0.99.8.1 dated 2014-09-22

 DESCRIPTION                     |    9 -
 MD5                             |   12 -
 R/DescTools-internal.R          |  250 ++++++++++++++++++++--------------------
 inst/doc/DescTools.pdf          |binary
 inst/doc/DescToolsCompanion.pdf |binary
 man/DescTools-package.Rd        |   12 -
 src/pointinpolygon.c            |    2 
 7 files changed, 143 insertions(+), 142 deletions(-)

More information about DescTools at CRAN
Permanent link

Sun, 21 Sep 2014

Package rgeos updated to version 0.3-8 with previous version 0.3-6 dated 2014-07-08

Title: Interface to Geometry Engine - Open Source (GEOS)
Description: Interface to Geometry Engine - Open Source (GEOS) using the C API for topology operations on geometries. The GEOS library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on CRAN.
Author: Roger Bivand [cre, aut], Colin Rundel [aut], Edzer Pebesma [ctb], Karl Ove Hufthammer [ctb]
Maintainer: Roger Bivand

Diff between rgeos versions 0.3-6 dated 2014-07-08 and 0.3-8 dated 2014-09-21

 ChangeLog                      |   57 ++++++
 DESCRIPTION                    |    8 
 MD5                            |   33 ++-
 NAMESPACE                      |    2 
 R/AAA.R                        |   38 ++++
 R/Rgpc_funcs.R                 |    8 
 R/rgeos_misc.R                 |   10 +
 R/rgeos_topology_binary.R      |   47 +++--
 inst/ChangeLog                 |   57 ++++++
 inst/SVN_VERSION               |    2 
 inst/test_cases                |only
 man/topo-bin-gDifference.Rd    |    4 
 man/topo-bin-gIntersection.Rd  |   35 +++-
 man/topo-bin-gSymdifference.Rd |    4 
 man/topo-bin-gUnion.Rd         |    4 
 man/utility-functions.Rd       |   46 +++++
 src/rgeos_geos2R.c             |  345 ++++++++++++++++++++++++++++++-----------
 src/rgeos_topology_binary.c    |   92 ++++++----
 18 files changed, 619 insertions(+), 173 deletions(-)

More information about rgeos at CRAN
Permanent link

Package sendmailR updated to version 1.2-1 with previous version 1.1-2 dated 2012-11-15

Title: send email using R
Description: Package contains a simple SMTP client which provides a portable solution for sending email, including attachment, from within R.
Author: Olaf Mersmann [aut, cre], Quinn Weber [ctb]
Maintainer: Olaf Mersmann

Diff between sendmailR versions 1.1-2 dated 2012-11-15 and 1.2-1 dated 2014-09-21

 sendmailR-1.1-2/sendmailR/ChangeLog                   |only
 sendmailR-1.2-1/sendmailR/DESCRIPTION                 |   24 ++++----
 sendmailR-1.2-1/sendmailR/MD5                         |   30 +++++-----
 sendmailR-1.2-1/sendmailR/NAMESPACE                   |   11 ++-
 sendmailR-1.2-1/sendmailR/R/mime_part.R               |   13 ++--
 sendmailR-1.2-1/sendmailR/R/sendmailR.r               |   43 +++++++++++---
 sendmailR-1.2-1/sendmailR/man/mime_part.Rd            |   17 +++--
 sendmailR-1.2-1/sendmailR/man/mime_part.character.Rd  |   16 ++---
 sendmailR-1.2-1/sendmailR/man/mime_part.data.frame.Rd |   15 ++---
 sendmailR-1.2-1/sendmailR/man/mime_part.default.Rd    |   18 +++---
 sendmailR-1.2-1/sendmailR/man/mime_part.ggplot.Rd     |   21 +++----
 sendmailR-1.2-1/sendmailR/man/mime_part.matrix.Rd     |   15 ++---
 sendmailR-1.2-1/sendmailR/man/mime_part.trellis.Rd    |   21 +++----
 sendmailR-1.2-1/sendmailR/man/sendmail.Rd             |   36 ++++++------
 sendmailR-1.2-1/sendmailR/man/sendmail_options.Rd     |   53 +++++++++---------
 sendmailR-1.2-1/sendmailR/tests                       |only
 sendmailR-1.2-1/sendmailR/tools                       |only
 17 files changed, 186 insertions(+), 147 deletions(-)

More information about sendmailR at CRAN
Permanent link

Package rmngb updated to version 0.5-1 with previous version 0.4-1 dated 2014-06-08

Title: rmngb Miscellaneous
Description: A collection of miscellaneous functions. Exploratory data analysis, multidimensional visualization, medico-economic simulation, multiple testing...
Author: Antoine Filipovic Pierucci
Maintainer: Antoine Filipovic Pierucci

Diff between rmngb versions 0.4-1 dated 2014-06-08 and 0.5-1 dated 2014-09-21

 DESCRIPTION                |    8 ++++----
 MD5                        |    9 +++++----
 NEWS                       |    7 +++++++
 R/utils.R                  |    6 ++++++
 man/interleave.Rd          |only
 man/pairwise.chisq.test.Rd |    2 +-
 6 files changed, 23 insertions(+), 9 deletions(-)

More information about rmngb at CRAN
Permanent link

Package mco updated to version 1.0-14 with previous version 1.0.13 dated 2014-09-20

Title: Multiple criteria optimization algorithms and related functions
Description: Functions for multiple criteria optimization using genetic algorithms and related test problems
Author: Olaf Mersmann [aut, cre], Heike Trautmann [ctb], Detlef Steuer [ctb], Bernd Bischl [ctb], Kalyanmoy Deb [cph]
Maintainer: Olaf Mersmann

Diff between mco versions 1.0.13 dated 2014-09-20 and 1.0-14 dated 2014-09-21

 DESCRIPTION  |   19 ++++++++++---------
 MD5          |    6 +++---
 src/Makevars |    3 ++-
 src/nsga2.c  |    2 +-
 4 files changed, 16 insertions(+), 14 deletions(-)

More information about mco at CRAN
Permanent link

Package trotter updated to version 0.6 with previous version 0.5 dated 2014-09-06

Title: Pseudo-Vectors Containing All Permutations, Combinations and Subsets of Objects Taken from a Vector.
Description: Class definitions and constructors for pseudo-vectors containing all permutations, combinations and subsets of objects taken from a vector. Simplifies working with structures commonly encountered in combinatorics.
Author: Richard Ambler
Maintainer: Richard Ambler

Diff between trotter versions 0.5 dated 2014-09-06 and 0.6 dated 2014-09-21

 DESCRIPTION               |   13 -
 MD5                       |   27 +-
 NAMESPACE                 |    3 
 R/trotter.R               |  446 ++++++++++++++++++++++++++++++++++++++++++++--
 man/apv.Rd                |only
 man/cpv.Rd                |   10 -
 man/length-APV-method.Rd  |only
 man/length-CPV-method.Rd  |    9 
 man/length-PPV-method.Rd  |    8 
 man/length-SPV-method.Rd  |only
 man/length-SSPV-method.Rd |only
 man/ppv.Rd                |   10 -
 man/spv.Rd                |only
 man/sspv.Rd               |only
 man/sub-APV-method.Rd     |only
 man/sub-CPV-method.Rd     |   12 -
 man/sub-PPV-method.Rd     |   10 -
 man/sub-SPV-method.Rd     |only
 man/sub-SSPV-method.Rd    |only
 19 files changed, 505 insertions(+), 43 deletions(-)

More information about trotter at CRAN
Permanent link

Package samplesize4surveys updated to version 2.1.0 with previous version 0.5.1 dated 2014-03-20

Title: Sample size calculations for complex surveys
Description: Computes the required sample size for estimation of totals, means and proportions under complex sampling designs.
Author: Hugo Andres Gutierrez Rojas
Maintainer: Hugo Andres Gutierrez Rojas

Diff between samplesize4surveys versions 0.5.1 dated 2014-03-20 and 2.1.0 dated 2014-09-21

 DESCRIPTION   |    9 ++++-----
 MD5           |   38 +++++++++++++++++++++++++++-----------
 NAMESPACE     |   10 ++++++++++
 R/DEFF.R      |only
 R/ICC.R       |    6 +++---
 R/ss4dm.R     |only
 R/ss4dmH.R    |only
 R/ss4dp.R     |only
 R/ss4dpH.R    |only
 R/ss4m.R      |   12 ++++++------
 R/ss4mH.R     |only
 R/ss4p.R      |    4 ++--
 R/ss4pH.R     |only
 R/ss4stm.R    |only
 man/DEFF.Rd   |only
 man/ICC.Rd    |   25 +++++++++----------------
 man/e4p.Rd    |   37 +++++++++++++------------------------
 man/ss2s4m.Rd |   54 +++++++++++++++++++++++-------------------------------
 man/ss2s4p.Rd |   51 ++++++++++++++++++++++-----------------------------
 man/ss4dm.Rd  |only
 man/ss4dmH.Rd |only
 man/ss4dp.Rd  |only
 man/ss4dpH.Rd |only
 man/ss4m.Rd   |   49 +++++++++++++++++++------------------------------
 man/ss4mH.Rd  |only
 man/ss4p.Rd   |   47 ++++++++++++++++++-----------------------------
 man/ss4pH.Rd  |only
 man/ss4stm.Rd |only
 28 files changed, 156 insertions(+), 186 deletions(-)

More information about samplesize4surveys at CRAN
Permanent link

New package RcmdrPlugin.MA with initial version 0.0-2
Package: RcmdrPlugin.MA
Type: Package
Title: Graphical User Interface for Conducting Meta-Analyses in R
Version: 0.0-2
Date: 2014-09-21
Author: A. C. Del Re
Maintainer: A. C. Del Re
Description: Easy to use interface for conducting meta-analysis in R. This package is an Rcmdr-plugin, which allows the user to conduct analyses in a menu-driven, graphical user interface environment (e.g., CMA, SPSS). It uses recommended procedures as described in The Handbook of Research Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine, 2009).
Depends: R (>= 2.15)
Imports: Rcmdr, MAd, metafor
Suggests: knitr, rmarkdown, compute.es, ggplot2, gridExtra, scales
License: GPL-2
RcmdrModels: mareg, macat, rma
URL: http://acdelre.weebly.com/
Packaged: 2014-09-20 22:33:08 UTC; acd
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-21 07:43:42

More information about RcmdrPlugin.MA at CRAN
Permanent link

Package archivist updated to version 1.1 with previous version 1.0 dated 2014-08-30

Title: Tools for storing, restoring and searching for R objects
Description: Data exploration and modelling is a process in which a lot of data artifacts are produced. Artifacts like: subsets, data aggregates, plots, statistical models, different versions of data sets and different versions of results. The more projects we work with the more artifacts are produced and the harder it is to manage these artifacts. Archivist helps to store and manage artifacts created in R. Archivist allows you to store selected artifacts as a binary files together with their metadata and relations. Archivist allows to share artifacts with others, either through shared folder or github. Archivist allows to look for already created artifacts by using it's class, name, date of the creation or other properties. Makes it easy to restore such artifacts. Archivist allows to check if new artifact is the exact copy that was produced some time ago. That might be useful either for testing or caching.
Author: Przemyslaw Biecek [aut, cre], Marcin Kosinski [aut]
Maintainer: Przemyslaw Biecek

Diff between archivist versions 1.0 dated 2014-08-30 and 1.1 dated 2014-09-21

 archivist-1.0/archivist/man/loadFromLocalRepo.Rd |only
 archivist-1.0/archivist/man/showLocalRepo.Rd     |only
 archivist-1.1/archivist/DESCRIPTION              |    6 
 archivist-1.1/archivist/MD5                      |   83 ++++---
 archivist-1.1/archivist/NAMESPACE                |    4 
 archivist-1.1/archivist/R/Tags.R                 |   26 ++
 archivist-1.1/archivist/R/archivist-package.R    |   22 +-
 archivist-1.1/archivist/R/copyToRepo.R           |  109 +++++-----
 archivist-1.1/archivist/R/createEmptyRepo.R      |   10 
 archivist-1.1/archivist/R/deleteRepo.R           |    2 
 archivist-1.1/archivist/R/extractData.R          |   52 ++++
 archivist-1.1/archivist/R/extractTags.R          |   24 +-
 archivist-1.1/archivist/R/getTags.R              |only
 archivist-1.1/archivist/R/loadFromRepo.R         |   58 ++++-
 archivist-1.1/archivist/R/rmFromRepo.R           |    2 
 archivist-1.1/archivist/R/saveToRepo.R           |   89 ++++++--
 archivist-1.1/archivist/R/searchInRepo.R         |   28 ++
 archivist-1.1/archivist/R/showRepo.R             |   27 ++
 archivist-1.1/archivist/R/summaryRepo.R          |   20 +
 archivist-1.1/archivist/R/tarRepo.R              |only
 archivist-1.1/archivist/R/zzz.R                  |   13 -
 archivist-1.1/archivist/demo/archivist.r         |   47 ++++
 archivist-1.1/archivist/man/Repository.Rd        |   78 +++----
 archivist-1.1/archivist/man/Tags.Rd              |  244 ++++++++---------------
 archivist-1.1/archivist/man/archivist-package.Rd |   62 +++--
 archivist-1.1/archivist/man/copyToRepo.Rd        |  101 ++++++---
 archivist-1.1/archivist/man/createEmptyRepo.Rd   |   89 ++++----
 archivist-1.1/archivist/man/deleteRepo.Rd        |   42 ++-
 archivist-1.1/archivist/man/getTags.Rd           |only
 archivist-1.1/archivist/man/loadFromRepo.Rd      |only
 archivist-1.1/archivist/man/md5hash.Rd           |   76 +++----
 archivist-1.1/archivist/man/rmFromRepo.Rd        |  140 +++++++------
 archivist-1.1/archivist/man/saveToRepo.Rd        |  234 ++++++++++++++--------
 archivist-1.1/archivist/man/searchInRepo.Rd      |  134 ++++++++----
 archivist-1.1/archivist/man/showRepo.Rd          |only
 archivist-1.1/archivist/man/summaryRepo.Rd       |   70 ++++--
 archivist-1.1/archivist/man/tarRepo.Rd           |only
 archivist-1.1/archivist/vignettes                |only
 38 files changed, 1154 insertions(+), 738 deletions(-)

More information about archivist at CRAN
Permanent link

New package CGP with initial version 2.0-2
Package: CGP
Type: Package
Title: Composite Gaussian process models
Version: 2.0-2
Date: 2014-09-20
Author: Shan Ba and V. Roshan Joseph
Maintainer: Shan Ba
Description: Fit composite Gaussian process (CGP) models as described in Ba and Joseph (2012) "Composite Gaussian Process Models for Emulating Expensive Functions", Annals of Applied Statistics. The CGP model is capable of approximating complex surfaces that are not second-order stationary. Important functions in this package are CGP, print.CGP, summary.CGP, predict.CGP and plotCGP.
License: LGPL-2.1
Packaged: 2014-09-21 04:18:33 UTC; Lenovo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-21 07:43:39

More information about CGP at CRAN
Permanent link

Sat, 20 Sep 2014

New package qdapRegex with initial version 0.1.1
Package: qdapRegex
Type: Package
Title: Regular Expression Removal, Extraction, & Replacement Tools
Version: 0.1.1
Date: 2014-04-19
Authors@R: c(person("Jason", "Gray", "", role = "ctb"), person("Tyler", "Rinker", email = "tyler.rinker@gmail.com", role = c("aut", "cre")))
Maintainer: Tyler Rinker
Depends: R (>= 3.0.0)
Imports: stringi
Suggests: testthat
LazyData: TRUE
Description: A collection of regex tools associated with the qdap package that may be useful outside of the context of discourse analysis. Tools include removal/extraction/replacement of abbreviations, dates, dollar amounts, email addresses, hash tags, numbers, percentages, person tags, phone numbers, times, and zip codes.
License: GPL-2
URL: http://trinker.github.com/qdapRegex/
BugReports: http://github.com/trinker/qdapRegex/issues
Collate: 'S.R' 'utils.R' 'rm_default.R' 'escape.R' 'grab.R' 'pastex.R' 'qdapRegex-package.R' 'rm_.R' 'rm_abbreviation.R' 'rm_between.R' 'rm_bracket.R' 'rm_caps.R' 'rm_citation.R' 'rm_city_state.R' 'rm_city_state_zip.R' 'rm_date.R' 'rm_dollar.R' 'rm_email.R' 'rm_emoticon.R' 'rm_endmark.R' 'rm_hash.R' 'rm_nchar_words.R' 'rm_non_ascii.R' 'rm_number.R' 'rm_percent.R' 'rm_phone.R' 'rm_tag.R' 'rm_time.R' 'rm_title_name.R' 'rm_url.R' 'rm_white.R' 'rm_zip.R' 'validate.R'
Packaged: 2014-09-20 20:12:24 UTC; trinker
Author: Jason Gray [ctb], Tyler Rinker [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 23:38:47

More information about qdapRegex at CRAN
Permanent link

Package DescTools updated to version 0.99.8 with previous version 0.99.7 dated 2014-05-04

Title: Tools for descriptive statistics
Description: DescTools contains a bunch of basic statistic functions and convenience wrappers for efficiently describing data, creating specific plots, doing reports using MS Word, Excel or PowerPoint. The package's intention is to offer a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'camel style' was consequently applied to functions borrowed from contributed R packages as well.
Author: Andri Signorell. Includes R source code and/or documentation previously published by (in alphabetical order): Nanina Anderegg, Tomas Aragon, Antti Arppe, Adrian Baddeley, Ben Bolker, Frederico Caeiro, Stephane Champely, Daniel Chessel, Leanne Chhay, Michael Dewey, Harold C. Doran, Stephane Dray, Charles Dupont, Jeff Enos, Claus Ekstrom, Martin Elff, John Fox, Tal Galili, Matthias Gamer, Joseph L. Gastwirth, Yulia R. Gel, Juergen Gross, Gabor Grothendieck, Frank E. Harrell Jr, Michael Hoehle, Christian W. Hoffmann, Markus Huerzeler, Wallace W. Hui, Rob J. Hyndman, Pablo J. Villacorta Iglesias, Matthias Kohl, Mikko Korpela, Detlew Labes, Friederich Leisch, Jim Lemon, Martin Maechler, Arni Magnusson, Daniel Malter, George Marsaglia, John Marsaglia, Alina Matei, David Meyer, Weiwen Miao, Yongyi Min, Markus Naepflin, Daniel Navarro, Klaus Nordhausen, Derek Ogle, Nick Parsons, Sandrine Pavoine, Roland Rapold, William Revelle, Tyler Rinker, Caroline Rodriguez, Venkatraman E. Seshan, Greg Snow, Michael Smithson, Werner A. Stahel, Yves Tille, Adrian Trapletti, Kevin Ushey, Jeremy VanDerWal, Bill Venables, John Verzani, Gregory R. Warnes, Stefan Wellek, Peter Wolf, Daniel Wollschlaeger, Achim Zeileis
Maintainer: Andri Signorell

Diff between DescTools versions 0.99.7 dated 2014-05-04 and 0.99.8 dated 2014-09-20

 DescTools-0.99.7/DescTools/R/AddConnLines.R                |only
 DescTools-0.99.7/DescTools/R/AddErrBars.R                  |only
 DescTools-0.99.7/DescTools/R/AddLm.R                       |only
 DescTools-0.99.7/DescTools/R/AddLm.default.R               |only
 DescTools-0.99.7/DescTools/R/AddLm.formula.R               |only
 DescTools-0.99.7/DescTools/R/AddLm.lm.R                    |only
 DescTools-0.99.7/DescTools/R/AddLoess.R                    |only
 DescTools-0.99.7/DescTools/R/AddLoess.default.R            |only
 DescTools-0.99.7/DescTools/R/AddLoess.formula.R            |only
 DescTools-0.99.7/DescTools/R/Partial.R                     |only
 DescTools-0.99.7/DescTools/R/Yearday.R                     |only
 DescTools-0.99.7/DescTools/R/Yearmonth.R                   |only
 DescTools-0.99.7/DescTools/inst/etc                        |only
 DescTools-0.99.7/DescTools/man/AddConnLines.Rd             |only
 DescTools-0.99.7/DescTools/man/AddErrBars.Rd               |only
 DescTools-0.99.7/DescTools/man/AddLm.Rd                    |only
 DescTools-0.99.7/DescTools/man/AddLoess.Rd                 |only
 DescTools-0.99.7/DescTools/man/PalTibco.Rd                 |only
 DescTools-0.99.7/DescTools/man/Partial.Rd                  |only
 DescTools-0.99.7/DescTools/man/Year.Rd                     |only
 DescTools-0.99.8/DescTools/DESCRIPTION                     |   15 
 DescTools-0.99.8/DescTools/MD5                             |  803 +++++++------
 DescTools-0.99.8/DescTools/NAMESPACE                       |    1 
 DescTools-0.99.8/DescTools/NEWS                            |   78 +
 DescTools-0.99.8/DescTools/R/AndersonDarlingTest.R         |  117 +
 DescTools-0.99.8/DescTools/R/Assocs.R                      |   48 
 DescTools-0.99.8/DescTools/R/BartelsRankTest.R             |only
 DescTools-0.99.8/DescTools/R/BoxCox.R                      |   16 
 DescTools-0.99.8/DescTools/R/BreslowDayTest.R              |    1 
 DescTools-0.99.8/DescTools/R/Canvas.R                      |   11 
 DescTools-0.99.8/DescTools/R/Closest.R                     |only
 DescTools-0.99.8/DescTools/R/CohenKappa.R                  |    6 
 DescTools-0.99.8/DescTools/R/ColorLegend.R                 |   10 
 DescTools-0.99.8/DescTools/R/ConnLines.R                   |only
 DescTools-0.99.8/DescTools/R/Contrasts.R                   |only
 DescTools-0.99.8/DescTools/R/CramerV.R                     |   23 
 DescTools-0.99.8/DescTools/R/CutQ.R                        |   75 +
 DescTools-0.99.8/DescTools/R/Day.R                         |    2 
 DescTools-0.99.8/DescTools/R/Desc.Date.R                   |    9 
 DescTools-0.99.8/DescTools/R/Desc.Lc.R                     |only
 DescTools-0.99.8/DescTools/R/Desc.character.R              |    6 
 DescTools-0.99.8/DescTools/R/Desc.data.frame.R             |    7 
 DescTools-0.99.8/DescTools/R/Desc.default.R                |    9 
 DescTools-0.99.8/DescTools/R/Desc.factor.R                 |   14 
 DescTools-0.99.8/DescTools/R/Desc.flags.R                  |only
 DescTools-0.99.8/DescTools/R/Desc.formula.R                |   83 -
 DescTools-0.99.8/DescTools/R/Desc.integer.R                |   13 
 DescTools-0.99.8/DescTools/R/Desc.list.R                   |   24 
 DescTools-0.99.8/DescTools/R/Desc.logical.R                |   12 
 DescTools-0.99.8/DescTools/R/Desc.matrix.R                 |    5 
 DescTools-0.99.8/DescTools/R/Desc.numeric.R                |   40 
 DescTools-0.99.8/DescTools/R/Desc.ordered.R                |    8 
 DescTools-0.99.8/DescTools/R/Desc.table.R                  |   35 
 DescTools-0.99.8/DescTools/R/DescFactFact.R                |   96 -
 DescTools-0.99.8/DescTools/R/DescFactNum.R                 |only
 DescTools-0.99.8/DescTools/R/DescNumFact.R                 |   18 
 DescTools-0.99.8/DescTools/R/DescNumNum.R                  |   14 
 DescTools-0.99.8/DescTools/R/DescTools-internal.R          |  331 +++--
 DescTools-0.99.8/DescTools/R/DescToolsOptions.R            |only
 DescTools-0.99.8/DescTools/R/DescWrd.data.frame.R          |  106 -
 DescTools-0.99.8/DescTools/R/DescWrd.default.R             |    6 
 DescTools-0.99.8/DescTools/R/DescWrd.formula.R             |  113 +
 DescTools-0.99.8/DescTools/R/DiffDays360.R                 |only
 DescTools-0.99.8/DescTools/R/DivCoefMax.R                  |    3 
 DescTools-0.99.8/DescTools/R/Entropy.R                     |    5 
 DescTools-0.99.8/DescTools/R/ErrBars.R                     |only
 DescTools-0.99.8/DescTools/R/EtaSq.R                       |only
 DescTools-0.99.8/DescTools/R/Explore.R                     |only
 DescTools-0.99.8/DescTools/R/Flags.R                       |only
 DescTools-0.99.8/DescTools/R/FormatSig.R                   |    4 
 DescTools-0.99.8/DescTools/R/Freq.R                        |   22 
 DescTools-0.99.8/DescTools/R/GetCurrPP.R                   |only
 DescTools-0.99.8/DescTools/R/GetCurrWrd.R                  |    2 
 DescTools-0.99.8/DescTools/R/GetCurrXL.R                   |    2 
 DescTools-0.99.8/DescTools/R/GetNewPP.R                    |    2 
 DescTools-0.99.8/DescTools/R/GetNewWrd.R                   |    2 
 DescTools-0.99.8/DescTools/R/GetNewXL.R                    |    2 
 DescTools-0.99.8/DescTools/R/Gmean.R                       |    1 
 DescTools-0.99.8/DescTools/R/HighLow.R                     |    4 
 DescTools-0.99.8/DescTools/R/Hmean.R                       |    8 
 DescTools-0.99.8/DescTools/R/HmsToSec.R                    |only
 DescTools-0.99.8/DescTools/R/HodgesLehmann.R               |only
 DescTools-0.99.8/DescTools/R/HoeffD.R                      |    8 
 DescTools-0.99.8/DescTools/R/HotellingsT2Test.R            |only
 DescTools-0.99.8/DescTools/R/HotellingsT2Test.default.R    |only
 DescTools-0.99.8/DescTools/R/HotellingsT2Test.formula.R    |only
 DescTools-0.99.8/DescTools/R/Hour.R                        |only
 DescTools-0.99.8/DescTools/R/IRR.R                         |only
 DescTools-0.99.8/DescTools/R/IsDichotomous.R               |only
 DescTools-0.99.8/DescTools/R/IsLeapYear.R                  |only
 DescTools-0.99.8/DescTools/R/IsOdd.R                       |only
 DescTools-0.99.8/DescTools/R/IsValidWrd.R                  |    4 
 DescTools-0.99.8/DescTools/R/IsWhole.R                     |    9 
 DescTools-0.99.8/DescTools/R/JarqueBeraTest.R              |  144 ++
 DescTools-0.99.8/DescTools/R/KendallW.R                    |    3 
 DescTools-0.99.8/DescTools/R/Keywords.R                    |only
 DescTools-0.99.8/DescTools/R/Kurt.R                        |   28 
 DescTools-0.99.8/DescTools/R/LOCF.R                        |   11 
 DescTools-0.99.8/DescTools/R/LOCF.data.frame.R             |only
 DescTools-0.99.8/DescTools/R/LOCF.default.R                |only
 DescTools-0.99.8/DescTools/R/LOCF.matrix.R                 |only
 DescTools-0.99.8/DescTools/R/LOF.R                         |only
 DescTools-0.99.8/DescTools/R/Lc.R                          |    6 
 DescTools-0.99.8/DescTools/R/LehmacherTest.R               |only
 DescTools-0.99.8/DescTools/R/Logit.R                       |    6 
 DescTools-0.99.8/DescTools/R/LogitInv.R                    |    6 
 DescTools-0.99.8/DescTools/R/LsData.R                      |only
 DescTools-0.99.8/DescTools/R/LsFct.R                       |    4 
 DescTools-0.99.8/DescTools/R/LsObj.R                       |only
 DescTools-0.99.8/DescTools/R/Mar.R                         |only
 DescTools-0.99.8/DescTools/R/MarginTable.R                 |only
 DescTools-0.99.8/DescTools/R/MeanAD.R                      |    3 
 DescTools-0.99.8/DescTools/R/MeanCI.R                      |   10 
 DescTools-0.99.8/DescTools/R/MeanDiffCI.default.R          |   10 
 DescTools-0.99.8/DescTools/R/MedianCI.R                    |   12 
 DescTools-0.99.8/DescTools/R/Midx.R                        |    5 
 DescTools-0.99.8/DescTools/R/Min.R                         |only
 DescTools-0.99.8/DescTools/R/MixColor.R                    |only
 DescTools-0.99.8/DescTools/R/Month.R                       |    2 
 DescTools-0.99.8/DescTools/R/MosesTest.formula.R           |    4 
 DescTools-0.99.8/DescTools/R/MutInf.R                      |    9 
 DescTools-0.99.8/DescTools/R/NPV.R                         |only
 DescTools-0.99.8/DescTools/R/Now.R                         |only
 DescTools-0.99.8/DescTools/R/OPR.R                         |only
 DescTools-0.99.8/DescTools/R/OrderMixed.R                  |only
 DescTools-0.99.8/DescTools/R/PalDescTools.R                |   10 
 DescTools-0.99.8/DescTools/R/ParseFormula.R                |   13 
 DescTools-0.99.8/DescTools/R/ParseSASDatalines.R           |only
 DescTools-0.99.8/DescTools/R/PartCor.R                     |only
 DescTools-0.99.8/DescTools/R/PasswordDlg.R                 |   22 
 DescTools-0.99.8/DescTools/R/Permn.R                       |   92 -
 DescTools-0.99.8/DescTools/R/PlotCirc.R                    |   21 
 DescTools-0.99.8/DescTools/R/PlotCorr.R                    |    2 
 DescTools-0.99.8/DescTools/R/PlotDesc.Date.R               |   44 
 DescTools-0.99.8/DescTools/R/PlotDesc.R                    |    3 
 DescTools-0.99.8/DescTools/R/PlotDesc.data.frame.R         |    2 
 DescTools-0.99.8/DescTools/R/PlotDesc.factor.R             |   16 
 DescTools-0.99.8/DescTools/R/PlotDesc.flags.R              |only
 DescTools-0.99.8/DescTools/R/PlotDesc.integer.R            |    5 
 DescTools-0.99.8/DescTools/R/PlotDesc.logical.R            |   14 
 DescTools-0.99.8/DescTools/R/PlotDesc.numeric.R            |    4 
 DescTools-0.99.8/DescTools/R/PlotDesc.table.R              |   19 
 DescTools-0.99.8/DescTools/R/PlotDescFactNum.R             |only
 DescTools-0.99.8/DescTools/R/PlotDescNumFact.R             |    1 
 DescTools-0.99.8/DescTools/R/PlotDescNumNum.R              |   14 
 DescTools-0.99.8/DescTools/R/PlotDotCI.R                   |    4 
 DescTools-0.99.8/DescTools/R/PlotFct.R                     |only
 DescTools-0.99.8/DescTools/R/PlotFdist.R                   |  195 +--
 DescTools-0.99.8/DescTools/R/PlotHorizBar.R                |   16 
 DescTools-0.99.8/DescTools/R/PlotMultiDens.formula.R       |    4 
 DescTools-0.99.8/DescTools/R/PlotQQ.R                      |   40 
 DescTools-0.99.8/DescTools/R/PlotViolin.formula.R          |    4 
 DescTools-0.99.8/DescTools/R/PostHocTest.R                 |only
 DescTools-0.99.8/DescTools/R/PostHocTest.aov.R             |only
 DescTools-0.99.8/DescTools/R/PpAddSlide.R                  |    2 
 DescTools-0.99.8/DescTools/R/PtInPoly.R                    |    4 
 DescTools-0.99.8/DescTools/R/Recycle.R                     |only
 DescTools-0.99.8/DescTools/R/RunsTest.R                    |   79 -
 DescTools-0.99.8/DescTools/R/RunsTest.default.R            |only
 DescTools-0.99.8/DescTools/R/RunsTest.formula.R            |only
 DescTools-0.99.8/DescTools/R/ScheffeTest.R                 |only
 DescTools-0.99.8/DescTools/R/ScheffeTest.aov.R             |only
 DescTools-0.99.8/DescTools/R/ScheffeTest.default.R         |only
 DescTools-0.99.8/DescTools/R/Sec.R                         |only
 DescTools-0.99.8/DescTools/R/SecToHms.R                    |only
 DescTools-0.99.8/DescTools/R/SignTest.default.R            |   11 
 DescTools-0.99.8/DescTools/R/SignTest.formula.R            |    6 
 DescTools-0.99.8/DescTools/R/Skew.R                        |   28 
 DescTools-0.99.8/DescTools/R/SomersDelta.R                 |    8 
 DescTools-0.99.8/DescTools/R/SortMixed.R                   |only
 DescTools-0.99.8/DescTools/R/SpreadOut.R                   |    2 
 DescTools-0.99.8/DescTools/R/Str.R                         |    6 
 DescTools-0.99.8/DescTools/R/StrChop.R                     |    2 
 DescTools-0.99.8/DescTools/R/StrPad.R                      |   24 
 DescTools-0.99.8/DescTools/R/StrPos.R                      |only
 DescTools-0.99.8/DescTools/R/StrTrunc.R                    |   16 
 DescTools-0.99.8/DescTools/R/Strata.R                      |    2 
 DescTools-0.99.8/DescTools/R/StuartMaxwellTest.R           |only
 DescTools-0.99.8/DescTools/R/SysInfo.R                     |only
 DescTools-0.99.8/DescTools/R/ToLong.R                      |only
 DescTools-0.99.8/DescTools/R/ToWide.R                      |only
 DescTools-0.99.8/DescTools/R/Today.R                       |only
 DescTools-0.99.8/DescTools/R/Trim.R                        |only
 DescTools-0.99.8/DescTools/R/UnitConv.R                    |only
 DescTools-0.99.8/DescTools/R/VarCI.R                       |   10 
 DescTools-0.99.8/DescTools/R/Vigenere.R                    |only
 DescTools-0.99.8/DescTools/R/Weekday.R                     |    2 
 DescTools-0.99.8/DescTools/R/WrdCaption.R                  |    3 
 DescTools-0.99.8/DescTools/R/WrdPlot.R                     |   17 
 DescTools-0.99.8/DescTools/R/WrdR.R                        |    3 
 DescTools-0.99.8/DescTools/R/WrdTable.Freq.R               |only
 DescTools-0.99.8/DescTools/R/WrdTable.R                    |   38 
 DescTools-0.99.8/DescTools/R/WrdTable.default.R            |only
 DescTools-0.99.8/DescTools/R/Year.R                        |    2 
 DescTools-0.99.8/DescTools/R/YearDay.R                     |only
 DescTools-0.99.8/DescTools/R/YearMonth.R                   |only
 DescTools-0.99.8/DescTools/R/lines.lm.R                    |only
 DescTools-0.99.8/DescTools/R/lines.loess.R                 |only
 DescTools-0.99.8/DescTools/R/plot.PostHocTest.R            |only
 DescTools-0.99.8/DescTools/R/print.Assocs.R                |only
 DescTools-0.99.8/DescTools/R/print.Freq.R                  |    4 
 DescTools-0.99.8/DescTools/R/print.PostHocTest.R           |only
 DescTools-0.99.8/DescTools/R/print.mtest.R                 |only
 DescTools-0.99.8/DescTools/R/reorder.factor.R              |only
 DescTools-0.99.8/DescTools/R/z%()%.R                       |   18 
 DescTools-0.99.8/DescTools/R/z%(]%.R                       |   17 
 DescTools-0.99.8/DescTools/R/z%)(%.R                       |only
 DescTools-0.99.8/DescTools/R/z%)[%.R                       |only
 DescTools-0.99.8/DescTools/R/z%[)%.R                       |   17 
 DescTools-0.99.8/DescTools/R/z%[]%.R                       |   19 
 DescTools-0.99.8/DescTools/R/z%](%.R                       |only
 DescTools-0.99.8/DescTools/R/z%][%.R                       |only
 DescTools-0.99.8/DescTools/data/d.periodic.rda             |only
 DescTools-0.99.8/DescTools/data/d.units.rda                |only
 DescTools-0.99.8/DescTools/data/hblue.rda                  |binary
 DescTools-0.99.8/DescTools/data/hecru.rda                  |only
 DescTools-0.99.8/DescTools/data/hgreen.rda                 |only
 DescTools-0.99.8/DescTools/data/horange.rda                |only
 DescTools-0.99.8/DescTools/data/hred.rda                   |binary
 DescTools-0.99.8/DescTools/data/hyellow.rda                |only
 DescTools-0.99.8/DescTools/demo                            |only
 DescTools-0.99.8/DescTools/inst/doc/DescTools.pdf          |binary
 DescTools-0.99.8/DescTools/inst/doc/DescToolsCompanion.pdf |binary
 DescTools-0.99.8/DescTools/inst/extdata                    |only
 DescTools-0.99.8/DescTools/man/AUC.Rd                      |    2 
 DescTools-0.99.8/DescTools/man/AddAlpha.Rd                 |    3 
 DescTools-0.99.8/DescTools/man/AddMonths.Rd                |    2 
 DescTools-0.99.8/DescTools/man/AllDuplicated.Rd            |    4 
 DescTools-0.99.8/DescTools/man/AndersonDarlingTest.Rd      |  108 -
 DescTools-0.99.8/DescTools/man/AreaIdent.Rd                |    2 
 DescTools-0.99.8/DescTools/man/AscToChar.Rd                |    4 
 DescTools-0.99.8/DescTools/man/Assocs.Rd                   |   13 
 DescTools-0.99.8/DescTools/man/Atkinson.Rd                 |    1 
 DescTools-0.99.8/DescTools/man/AxisBreak.Rd                |    2 
 DescTools-0.99.8/DescTools/man/BartelsRankTest.Rd          |only
 DescTools-0.99.8/DescTools/man/Between.Rd                  |   34 
 DescTools-0.99.8/DescTools/man/BinToDec.Rd                 |    2 
 DescTools-0.99.8/DescTools/man/BinomCI.Rd                  |    2 
 DescTools-0.99.8/DescTools/man/BinomDiffCI.Rd              |    4 
 DescTools-0.99.8/DescTools/man/BoxCox.Rd                   |    1 
 DescTools-0.99.8/DescTools/man/BoxedText.Rd                |    4 
 DescTools-0.99.8/DescTools/man/BreslowDayTest.Rd           |    2 
 DescTools-0.99.8/DescTools/man/Canvas.Rd                   |    7 
 DescTools-0.99.8/DescTools/man/CartToPol.Rd                |    4 
 DescTools-0.99.8/DescTools/man/CatTable.Rd                 |    3 
 DescTools-0.99.8/DescTools/man/Clockwise.Rd                |    2 
 DescTools-0.99.8/DescTools/man/Closest.Rd                  |only
 DescTools-0.99.8/DescTools/man/Coalesce.Rd                 |    2 
 DescTools-0.99.8/DescTools/man/CochranArmitageTest.Rd      |    1 
 DescTools-0.99.8/DescTools/man/CochranQTest.Rd             |    1 
 DescTools-0.99.8/DescTools/man/CohenKappa.Rd               |    2 
 DescTools-0.99.8/DescTools/man/ColToHex.Rd                 |    2 
 DescTools-0.99.8/DescTools/man/ColToHsv.Rd                 |    2 
 DescTools-0.99.8/DescTools/man/ColToRgb.Rd                 |    3 
 DescTools-0.99.8/DescTools/man/ColorLegend.Rd              |   17 
 DescTools-0.99.8/DescTools/man/ConDisPairs.Rd              |    2 
 DescTools-0.99.8/DescTools/man/ConnLines.Rd                |only
 DescTools-0.99.8/DescTools/man/Contrasts.Rd                |only
 DescTools-0.99.8/DescTools/man/CramerV.Rd                  |    5 
 DescTools-0.99.8/DescTools/man/CramerVonMisesTest.Rd       |    1 
 DescTools-0.99.8/DescTools/man/CronbachAlpha.Rd            |    2 
 DescTools-0.99.8/DescTools/man/CutQ.Rd                     |   87 -
 DescTools-0.99.8/DescTools/man/Date.Rd                     |    3 
 DescTools-0.99.8/DescTools/man/DateFunctions.Rd            |only
 DescTools-0.99.8/DescTools/man/DegToRad.Rd                 |    2 
 DescTools-0.99.8/DescTools/man/Desc.Date.Rd                |    9 
 DescTools-0.99.8/DescTools/man/Desc.Rd                     |   32 
 DescTools-0.99.8/DescTools/man/Desc.data.frame.Rd          |    6 
 DescTools-0.99.8/DescTools/man/Desc.factor.Rd              |   35 
 DescTools-0.99.8/DescTools/man/Desc.flags.Rd               |only
 DescTools-0.99.8/DescTools/man/Desc.formula.Rd             |   12 
 DescTools-0.99.8/DescTools/man/Desc.integer.Rd             |   10 
 DescTools-0.99.8/DescTools/man/Desc.logical.Rd             |   10 
 DescTools-0.99.8/DescTools/man/Desc.numeric.Rd             |   10 
 DescTools-0.99.8/DescTools/man/Desc.table.Rd               |   66 -
 DescTools-0.99.8/DescTools/man/DescTools-package.Rd        |  232 +--
 DescTools-0.99.8/DescTools/man/DescWrd.Rd                  |   25 
 DescTools-0.99.8/DescTools/man/DivCoef.Rd                  |    2 
 DescTools-0.99.8/DescTools/man/DrawAnnulus.Rd              |    2 
 DescTools-0.99.8/DescTools/man/DrawAnnulusSector.Rd        |    4 
 DescTools-0.99.8/DescTools/man/DrawArc.Rd                  |    2 
 DescTools-0.99.8/DescTools/man/DrawBand.Rd                 |    3 
 DescTools-0.99.8/DescTools/man/DrawBezier.Rd               |    2 
 DescTools-0.99.8/DescTools/man/DrawCircle.Rd               |   10 
 DescTools-0.99.8/DescTools/man/DrawEllipse.Rd              |    4 
 DescTools-0.99.8/DescTools/man/DrawRegPolygon.Rd           |    4 
 DescTools-0.99.8/DescTools/man/Dummy.Rd                    |    2 
 DescTools-0.99.8/DescTools/man/ErrBars.Rd                  |only
 DescTools-0.99.8/DescTools/man/EtaSq.Rd                    |only
 DescTools-0.99.8/DescTools/man/ExpFreq.Rd                  |    1 
 DescTools-0.99.8/DescTools/man/Explore.Rd                  |only
 DescTools-0.99.8/DescTools/man/FctArgs.Rd                  |    2 
 DescTools-0.99.8/DescTools/man/FindColor.Rd                |    2 
 DescTools-0.99.8/DescTools/man/FisherZ.Rd                  |    2 
 DescTools-0.99.8/DescTools/man/FixToTab.Rd                 |    3 
 DescTools-0.99.8/DescTools/man/FormatSig.Rd                |    2 
 DescTools-0.99.8/DescTools/man/Frac.Rd                     |    2 
 DescTools-0.99.8/DescTools/man/Freq.Rd                     |    1 
 DescTools-0.99.8/DescTools/man/GetAllSubsets.Rd            |    2 
 DescTools-0.99.8/DescTools/man/GetCurrWrd.Rd               |    1 
 DescTools-0.99.8/DescTools/man/GetNewPP.Rd                 |    8 
 DescTools-0.99.8/DescTools/man/GetNewWrd.Rd                |    2 
 DescTools-0.99.8/DescTools/man/GetNewXL.Rd                 |    2 
 DescTools-0.99.8/DescTools/man/GetPairs.Rd                 |    2 
 DescTools-0.99.8/DescTools/man/Gini.Rd                     |    2 
 DescTools-0.99.8/DescTools/man/GiniSimpson.Rd              |    2 
 DescTools-0.99.8/DescTools/man/Gmean.Rd                    |    8 
 DescTools-0.99.8/DescTools/man/GoodmanKruskalGamma.Rd      |    7 
 DescTools-0.99.8/DescTools/man/GoodmanKruskalTauA.Rd       |    1 
 DescTools-0.99.8/DescTools/man/Herfindahl.Rd               |    3 
 DescTools-0.99.8/DescTools/man/HexToCol.Rd                 |    1 
 DescTools-0.99.8/DescTools/man/HexToRgb.Rd                 |    1 
 DescTools-0.99.8/DescTools/man/HighLow.Rd                  |    1 
 DescTools-0.99.8/DescTools/man/Hmean.Rd                    |    5 
 DescTools-0.99.8/DescTools/man/HmsToSec.Rd                 |only
 DescTools-0.99.8/DescTools/man/HodgesLehmann.Rd            |only
 DescTools-0.99.8/DescTools/man/HoeffD.Rd                   |    1 
 DescTools-0.99.8/DescTools/man/HotellingsT.Rd              |only
 DescTools-0.99.8/DescTools/man/ICC.Rd                      |    2 
 DescTools-0.99.8/DescTools/man/ImportDlg.Rd                |    7 
 DescTools-0.99.8/DescTools/man/IsDate.Rd                   |    1 
 DescTools-0.99.8/DescTools/man/IsDichotomous.Rd            |only
 DescTools-0.99.8/DescTools/man/IsEuclid.Rd                 |    2 
 DescTools-0.99.8/DescTools/man/IsOdd.Rd                    |only
 DescTools-0.99.8/DescTools/man/JarqueBeraTest.Rd           |   65 -
 DescTools-0.99.8/DescTools/man/JonckheereTerpstraTest.Rd   |    7 
 DescTools-0.99.8/DescTools/man/Kappam.Rd                   |    3 
 DescTools-0.99.8/DescTools/man/KendallTauB.Rd              |    3 
 DescTools-0.99.8/DescTools/man/KendallW.Rd                 |    3 
 DescTools-0.99.8/DescTools/man/Keywords.Rd                 |only
 DescTools-0.99.8/DescTools/man/LOCF.Rd                     |   16 
 DescTools-0.99.8/DescTools/man/LOF.Rd                      |only
 DescTools-0.99.8/DescTools/man/Label.Rd                    |    2 
 DescTools-0.99.8/DescTools/man/Lambda.Rd                   |    3 
 DescTools-0.99.8/DescTools/man/Large.Rd                    |   10 
 DescTools-0.99.8/DescTools/man/Lc.Rd                       |   18 
 DescTools-0.99.8/DescTools/man/LehmacherTest.Rd            |only
 DescTools-0.99.8/DescTools/man/LeveneTest.Rd               |    2 
 DescTools-0.99.8/DescTools/man/LillieTest.Rd               |    1 
 DescTools-0.99.8/DescTools/man/LinScale.Rd                 |    4 
 DescTools-0.99.8/DescTools/man/LogLin.Rd                   |    1 
 DescTools-0.99.8/DescTools/man/LogSt.Rd                    |    4 
 DescTools-0.99.8/DescTools/man/LsFct.Rd                    |    9 
 DescTools-0.99.8/DescTools/man/MHChisqTest.Rd              |    2 
 DescTools-0.99.8/DescTools/man/Mar.Rd                      |only
 DescTools-0.99.8/DescTools/man/Mbind.Rd                    |    4 
 DescTools-0.99.8/DescTools/man/MeanAD.Rd                   |   10 
 DescTools-0.99.8/DescTools/man/MeanCI.Rd                   |   17 
 DescTools-0.99.8/DescTools/man/MeanDiffCI.Rd               |   21 
 DescTools-0.99.8/DescTools/man/MeanSE.Rd                   |    1 
 DescTools-0.99.8/DescTools/man/MedianCI.Rd                 |   20 
 DescTools-0.99.8/DescTools/man/Midx.Rd                     |    7 
 DescTools-0.99.8/DescTools/man/MixColor.Rd                 |only
 DescTools-0.99.8/DescTools/man/Mode.Rd                     |    1 
 DescTools-0.99.8/DescTools/man/MosesTest.Rd                |    2 
 DescTools-0.99.8/DescTools/man/Mround.Rd                   |    3 
 DescTools-0.99.8/DescTools/man/MultinomCI.Rd               |    2 
 DescTools-0.99.8/DescTools/man/NPV.Rd                      |only
 DescTools-0.99.8/DescTools/man/Ndec.Rd                     |    2 
 DescTools-0.99.8/DescTools/man/OddsRatio.Rd                |    4 
 DescTools-0.99.8/DescTools/man/Outlier.Rd                  |    4 
 DescTools-0.99.8/DescTools/man/PageTest.Rd                 |    1 
 DescTools-0.99.8/DescTools/man/PalDescTools.Rd             |   47 
 DescTools-0.99.8/DescTools/man/ParseFormula.Rd             |    7 
 DescTools-0.99.8/DescTools/man/ParseSASDatalines.Rd        |only
 DescTools-0.99.8/DescTools/man/PartCor.Rd                  |only
 DescTools-0.99.8/DescTools/man/PasswordDlg.Rd              |    4 
 DescTools-0.99.8/DescTools/man/PearsonTest.Rd              |    1 
 DescTools-0.99.8/DescTools/man/PercTable.Rd                |   13 
 DescTools-0.99.8/DescTools/man/Permn.Rd                    |   29 
 DescTools-0.99.8/DescTools/man/PlotArea.Rd                 |    6 
 DescTools-0.99.8/DescTools/man/PlotBubble.Rd               |    2 
 DescTools-0.99.8/DescTools/man/PlotCandlestick.Rd          |    2 
 DescTools-0.99.8/DescTools/man/PlotCirc.Rd                 |   16 
 DescTools-0.99.8/DescTools/man/PlotDesc.Rd                 |   49 
 DescTools-0.99.8/DescTools/man/PlotDotCI.Rd                |    7 
 DescTools-0.99.8/DescTools/man/PlotDotCIp.Rd               |    2 
 DescTools-0.99.8/DescTools/man/PlotFaces.Rd                |    2 
 DescTools-0.99.8/DescTools/man/PlotFct.Rd                  |only
 DescTools-0.99.8/DescTools/man/PlotFdist.Rd                |   23 
 DescTools-0.99.8/DescTools/man/PlotHorizBar.Rd             |   10 
 DescTools-0.99.8/DescTools/man/PlotMarDens.Rd              |    2 
 DescTools-0.99.8/DescTools/man/PlotMultiDens.Rd            |    4 
 DescTools-0.99.8/DescTools/man/PlotPolar.Rd                |    4 
 DescTools-0.99.8/DescTools/man/PlotPyramid.Rd              |    2 
 DescTools-0.99.8/DescTools/man/PlotQQ.Rd                   |   34 
 DescTools-0.99.8/DescTools/man/PlotTreemap.Rd              |    2 
 DescTools-0.99.8/DescTools/man/PlotVenn.Rd                 |    1 
 DescTools-0.99.8/DescTools/man/PlotViolin.Rd               |    2 
 DescTools-0.99.8/DescTools/man/PlotWeb.Rd                  |    1 
 DescTools-0.99.8/DescTools/man/PoissonCI.Rd                |    1 
 DescTools-0.99.8/DescTools/man/PolarGrid.Rd                |    3 
 DescTools-0.99.8/DescTools/man/PostHocTest.Rd              |only
 DescTools-0.99.8/DescTools/man/Primes.Rd                   |    3 
 DescTools-0.99.8/DescTools/man/PtInPoly.Rd                 |    1 
 DescTools-0.99.8/DescTools/man/PwApply.Rd                  |    3 
 DescTools-0.99.8/DescTools/man/Recode.Rd                   |    9 
 DescTools-0.99.8/DescTools/man/Recycle.Rd                  |only
 DescTools-0.99.8/DescTools/man/RelRisk.Rd                  |    7 
 DescTools-0.99.8/DescTools/man/Rename.Rd                   |    3 
 DescTools-0.99.8/DescTools/man/ReorderFactor.Rd            |only
 DescTools-0.99.8/DescTools/man/Rev.Rd                      |    3 
 DescTools-0.99.8/DescTools/man/RgbToCol.Rd                 |    1 
 DescTools-0.99.8/DescTools/man/RobRange.Rd                 |    1 
 DescTools-0.99.8/DescTools/man/RobScale.Rd                 |    4 
 DescTools-0.99.8/DescTools/man/Rotate.Rd                   |    3 
 DescTools-0.99.8/DescTools/man/RunsTest.Rd                 |   65 -
 DescTools-0.99.8/DescTools/man/SampleTwins.Rd              |    2 
 DescTools-0.99.8/DescTools/man/ScheffeTest.Rd              |only
 DescTools-0.99.8/DescTools/man/SelectVarDlg.Rd             |    2 
 DescTools-0.99.8/DescTools/man/ShapiroFranciaTest.Rd       |    1 
 DescTools-0.99.8/DescTools/man/SiegelTukeyTest.Rd          |    2 
 DescTools-0.99.8/DescTools/man/SignTest.Rd                 |    5 
 DescTools-0.99.8/DescTools/man/Skew.Rd                     |    6 
 DescTools-0.99.8/DescTools/man/SomersDelta.Rd              |    6 
 DescTools-0.99.8/DescTools/man/Sort.Rd                     |    4 
 DescTools-0.99.8/DescTools/man/SortMixed.Rd                |only
 DescTools-0.99.8/DescTools/man/SpearmanRho.Rd              |    2 
 DescTools-0.99.8/DescTools/man/SpreadOut.Rd                |    2 
 DescTools-0.99.8/DescTools/man/StrAbbr.Rd                  |    2 
 DescTools-0.99.8/DescTools/man/StrCap.Rd                   |    4 
 DescTools-0.99.8/DescTools/man/StrChop.Rd                  |    3 
 DescTools-0.99.8/DescTools/man/StrCountW.Rd                |    5 
 DescTools-0.99.8/DescTools/man/StrDist.Rd                  |    3 
 DescTools-0.99.8/DescTools/man/StrIsNumeric.Rd             |    1 
 DescTools-0.99.8/DescTools/man/StrPad.Rd                   |   11 
 DescTools-0.99.8/DescTools/man/StrPos.Rd                   |only
 DescTools-0.99.8/DescTools/man/StrRev.Rd                   |    3 
 DescTools-0.99.8/DescTools/man/StrTrim.Rd                  |    1 
 DescTools-0.99.8/DescTools/man/StrTrunc.Rd                 |    4 
 DescTools-0.99.8/DescTools/man/StrVal.Rd                   |    2 
 DescTools-0.99.8/DescTools/man/Strata.Rd                   |    3 
 DescTools-0.99.8/DescTools/man/StuartMaxwellTest.Rd        |only
 DescTools-0.99.8/DescTools/man/StuartTauC.Rd               |    7 
 DescTools-0.99.8/DescTools/man/SysInfo.Rd                  |only
 DescTools-0.99.8/DescTools/man/TextContrastColor.Rd        |    3 
 DescTools-0.99.8/DescTools/man/ToWide.Rd                   |only
 DescTools-0.99.8/DescTools/man/Trim.Rd                     |only
 DescTools-0.99.8/DescTools/man/TukeyBiweight.Rd            |    3 
 DescTools-0.99.8/DescTools/man/UncertCoef.Rd               |    1 
 DescTools-0.99.8/DescTools/man/UnitConv.Rd                 |only
 DescTools-0.99.8/DescTools/man/Untable.Rd                  |    4 
 DescTools-0.99.8/DescTools/man/VarCI.Rd                    |   11 
 DescTools-0.99.8/DescTools/man/VecRot.Rd                   |    2 
 DescTools-0.99.8/DescTools/man/Vigenere.Rd                 |only
 DescTools-0.99.8/DescTools/man/WhichFlags.Rd               |    8 
 DescTools-0.99.8/DescTools/man/Winsorize.Rd                |    3 
 DescTools-0.99.8/DescTools/man/WoolfTest.Rd                |    2 
 DescTools-0.99.8/DescTools/man/WrdCaption.Rd               |    4 
 DescTools-0.99.8/DescTools/man/WrdInsTab.Rd                |    3 
 DescTools-0.99.8/DescTools/man/WrdInsertBookmark.Rd        |    3 
 DescTools-0.99.8/DescTools/man/WrdPlot.Rd                  |    4 
 DescTools-0.99.8/DescTools/man/WrdSetFont.Rd               |    4 
 DescTools-0.99.8/DescTools/man/WrdTable.Rd                 |   16 
 DescTools-0.99.8/DescTools/man/WrdText.Rd                  |    3 
 DescTools-0.99.8/DescTools/man/XLGetRange.Rd               |    2 
 DescTools-0.99.8/DescTools/man/XLView.Rd                   |    2 
 DescTools-0.99.8/DescTools/man/ZTest.Rd                    |    2 
 DescTools-0.99.8/DescTools/man/d.periodic.Rd               |only
 DescTools-0.99.8/DescTools/man/d.pizza.Rd                  |    1 
 DescTools-0.99.8/DescTools/man/identify.formula.Rd         |    2 
 DescTools-0.99.8/DescTools/man/like.Rd                     |    2 
 DescTools-0.99.8/DescTools/man/lines.lm.Rd                 |only
 DescTools-0.99.8/DescTools/man/lines.loess.Rd              |only
 DescTools-0.99.8/DescTools/man/median.factor.Rd            |    1 
 DescTools-0.99.8/DescTools/man/overlaps.Rd                 |    2 
 DescTools-0.99.8/DescTools/man/paste.Rd                    |    2 
 DescTools-0.99.8/DescTools/man/split.formula.Rd            |    1 
 DescTools-0.99.8/DescTools/src/ADinf.c                     |only
 DescTools-0.99.8/DescTools/src/AnDarl.c                    |only
 DescTools-0.99.8/DescTools/src/between.c                   |   78 +
 DescTools-0.99.8/DescTools/src/between.h                   |    7 
 DescTools-0.99.8/DescTools/src/conc.c                      |    7 
 DescTools-0.99.8/DescTools/src/moments.c                   |only
 DescTools-0.99.8/DescTools/src/robustbase.h                |    1 
 DescTools-0.99.8/DescTools/src/wgt_himed.c                 |    3 
 476 files changed, 2819 insertions(+), 2357 deletions(-)

More information about DescTools at CRAN
Permanent link

Package shapes updated to version 1.1-10 with previous version 1.1-9 dated 2013-12-21

Title: Statistical shape analysis
Description: Routines for the statistical analysis of shapes. In particular, the package provides routines for Procrustes analysis, displaying shapes and principal components, testing for mean shape difference, thin-plate spline transformation grids and comparing covariance matrices.
Author: Ian L. Dryden
Maintainer: Ian Dryden

Diff between shapes versions 1.1-9 dated 2013-12-21 and 1.1-10 dated 2014-09-20

 DESCRIPTION            |   10 
 MD5                    |   28 
 R/shapes.R             |14554 ++++++++++++++++++++++++-------------------------
 data/brains.rda        |binary
 data/gorf.dat.rda      |binary
 data/gorm.dat.rda      |binary
 data/macf.dat.rda      |binary
 data/macm.dat.rda      |binary
 data/nsa.rda           |binary
 data/protein.rda       |binary
 data/qcet2.dat.rda     |binary
 data/qlet2.dat.rda     |binary
 data/qset2.dat.rda     |binary
 data/sooty.dat.rda     |binary
 man/transformations.Rd |   94 
 15 files changed, 7354 insertions(+), 7332 deletions(-)

More information about shapes at CRAN
Permanent link

Package randomizationInference updated to version 1.0.2 with previous version 1.0.1 dated 2013-12-03

Title: Flexible Randomization-Based Inference
Description: The 'randomizationInference' package allows the user to conduct randomization-based inference for a wide variety of experimental scenarios. The package leverages a potential outcomes framework to output randomization-based p-values and null intervals for test statistics geared toward any estimands of interest, according to the specified null and alternative hypotheses. Users can define custom randomization schemes so that the randomization distributions are accurate for their experimental settings. The package also creates visualizations of randomization distributions and can test multiple test statistics simultaneously.
Author: Joseph J. Lee and Tirthankar Dasgupta
Maintainer: Joseph J. Lee

Diff between randomizationInference versions 1.0.1 dated 2013-12-03 and 1.0.2 dated 2014-09-20

 DESCRIPTION                           |   10 +++---
 MD5                                   |   30 ++++++++++----------
 R/blockRand.R                         |   14 ++++-----
 R/completeRand.R                      |   12 ++++----
 R/latinRand.R                         |   18 ++++++------
 R/randInterval.R                      |    2 -
 R/randTest.R                          |   48 ++++++++++++++++++---------------
 man/blockRand.Rd                      |   18 ++++++------
 man/completeRand.Rd                   |   16 +++++------
 man/diffMeans.Rd                      |    4 +-
 man/diffMeansVector.Rd                |    4 +-
 man/latinRand.Rd                      |   16 +++++------
 man/randInterval.Rd                   |    8 ++---
 man/randPlot.Rd                       |    4 +-
 man/randTest.Rd                       |   41 +++++++++++++++++-----------
 man/randomizationInference-package.Rd |   49 +++++++++++++++++++++++-----------
 16 files changed, 164 insertions(+), 130 deletions(-)

More information about randomizationInference at CRAN
Permanent link

New package audited with initial version 1.9
Package: audited
Type: Package
Title: Automatic Tracing and Display of Changes to Row Count
Version: 1.9
Date: 2014-09-18
Author: Tim Bergsma
Maintainer: Tim Bergsma
Imports: igraph, metrumrg, methods
Suggests: xlsx, rJava
Description: Classifies a data.frame such that row deletions and additions are tracked. A mechanism exists to give formal names to the row subsets that are coming or going. These names are used to populate a directed graph giving an account of all the transactions contributing to the state of the data.frame. The generic as.audited() has a method for keyed data.frames that creates an audited data.frame. Methods exist that track row count changes for the generics: Ops, !, ^, |, [, subset, head, tail, unique, cast, melt, aggregate, and merge. audit() extracts the transaction table from the audited object, while write.audit() and read.audit() control exchange with the file system. An audit method for as.igraph() creates a graph object that can be displayed with the corresponding plot method. Use options(audit= ) to provide an extra level of classification. Use options(artifact=TRUE) and as.xlsx() to save dropped records to file.
License: GPL
Packaged: 2014-09-20 16:05:24 UTC; timb
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 22:03:15

More information about audited at CRAN
Permanent link

Package RcppOctave updated to version 0.14.5 with previous version 0.14.1 dated 2014-03-10

Title: Seamless Interface to Octave -- and Matlab
Description: Direct interface to Octave. The primary goal is to facilitate the port of Matlab/Octave scripts to R. The package enables to call any Octave functions from R and as well as browsing their documentation, passing variables between R and Octave, using R core RNGs in Octave, which ensures that stochastic computations are also reproducible.
Author: Renaud Gaujoux
Maintainer: Renaud Gaujoux

Diff between RcppOctave versions 0.14.1 dated 2014-03-10 and 0.14.5 dated 2014-09-20

 DESCRIPTION                               |    8 
 MD5                                       |  110 +++++------
 NEWS                                      |   30 +++
 R/config.R                                |    2 
 R/interface.R                             |    4 
 R/package.R                               |    9 
 R/utils.R                                 |    6 
 build/RcppOctave.pdf                      |binary
 build/vignette.rds                        |binary
 configure                                 |  280 ++++++++++++++++++++++++++----
 configure.ac                              |   42 +++-
 configure.win                             |    6 
 inst/doc/RcppOctave-unitTests.Rnw         |   36 +--
 inst/doc/RcppOctave-unitTests.pdf         |binary
 inst/doc/RcppOctave.Rnw                   |   11 -
 inst/doc/RcppOctave.pdf                   |binary
 man/Octave-class.Rd                       |   44 ++--
 man/Octave.config.Rd                      |    9 
 man/Octave.home.Rd                        |   26 +-
 man/OctaveFunction-class.Rd               |   22 +-
 man/OctaveInterface.Rd                    |  100 +++++-----
 man/RcppOctave-package.Rd                 |   25 ++
 man/check.equal.Rd                        |   17 -
 man/dot-CallOctave.Rd                     |   81 ++++----
 man/dot-DollarNames-commaOctave-method.Rd |   10 -
 man/mfiles.Rd                             |   17 -
 man/o_addpath.Rd                          |   18 -
 man/o_assign.Rd                           |   49 ++---
 man/o_clear.Rd                            |   20 --
 man/o_config_info.Rd                      |    7 
 man/o_eval.Rd                             |   21 --
 man/o_exist.Rd                            |   10 -
 man/o_help.Rd                             |   72 +++----
 man/o_identity.Rd                         |    4 
 man/o_load.Rd                             |   15 -
 man/o_ls.Rd                               |   19 --
 man/o_rexp.Rd                             |   11 -
 man/o_rgamma.Rd                           |   11 -
 man/o_rnorm.Rd                            |   11 -
 man/o_runif.Rd                            |   42 ++--
 man/o_source.Rd                           |   34 +--
 man/o_version.Rd                          |    8 
 man/o_who.Rd                              |   28 +--
 man/o_whos.Rd                             |   22 --
 man/octave-ll.Rd                          |   18 -
 man/octave_config.Rd                      |   29 +--
 man/sourceExamples.Rd                     |    5 
 man/system.mfile.Rd                       |    8 
 src/Makevars.in                           |   20 +-
 src/Makevars.win.in                       |   22 +-
 src/Redirect.hpp                          |   17 +
 src/modules/Makefile.in                   |   11 -
 src/rcpp_octave.cpp                       |   47 +++--
 src/rcpp_octave.h                         |    2 
 vignettes/RcppOctave-unitTests.Rnw        |   36 +--
 vignettes/RcppOctave.Rnw                  |   11 -
 56 files changed, 886 insertions(+), 637 deletions(-)

More information about RcppOctave at CRAN
Permanent link

Package mitools updated to version 2.3 with previous version 2.2 dated 2012-05-30

Title: Tools for multiple imputation of missing data
Description: Tools to perform analyses and combine results from multiple-imputation datasets.
Author: Thomas Lumley
Maintainer: Thomas Lumley

Diff between mitools versions 2.2 dated 2012-05-30 and 2.3 dated 2014-09-20

 DESCRIPTION      |   13 +++++++------
 MD5              |   15 +++++++++------
 NEWS             |    2 ++
 R/MI.R           |   15 +++++++--------
 R/update.R       |    6 +++---
 build            |only
 data/smi.rda     |binary
 inst/doc/smi.R   |only
 inst/doc/smi.pdf |binary
 vignettes        |only
 10 files changed, 28 insertions(+), 23 deletions(-)

More information about mitools at CRAN
Permanent link

Package mco updated to version 1.0.13 with previous version 1.0.12 dated 2013-03-21

Title: Multiple criteria optimization algorithms and related functions
Description: Functions for multiple criteria optimization using genetic algorithms and related test problems
Author: Olaf Mersmann [aut, cre], Heike Trautmann [ctb], Detlef Steuer [ctb], Bernd Bischl [ctb], Kalyanmoy Deb [cph]
Maintainer: Olaf Mersmann

Diff between mco versions 1.0.12 dated 2013-03-21 and 1.0.13 dated 2014-09-20

 mco-1.0.12/mco/ChangeLog    |only
 mco-1.0.13/mco/DESCRIPTION  |   32 +++---
 mco-1.0.13/mco/MD5          |   13 +-
 mco-1.0.13/mco/NAMESPACE    |    2 
 mco-1.0.13/mco/R/nsga2.R    |   28 +++--
 mco-1.0.13/mco/R/qs.R       |    4 
 mco-1.0.13/mco/man/nsga2.Rd |   18 ++-
 mco-1.0.13/mco/src/nsga2.c  |  229 +++++++++++++++++++++++---------------------
 8 files changed, 183 insertions(+), 143 deletions(-)

More information about mco at CRAN
Permanent link

Package llama updated to version 0.7.2 with previous version 0.7.1 dated 2014-08-13

Title: Leveraging Learning to Automatically Manage Algorithms
Description: Provides functionality to train and evaluate algorithm selection models for portfolios.
Author: Lars Kotthoff [aut,cre], Bernd Bischl [aut], Barry Hurley [ctb], Talal Rahwan [ctb]
Maintainer: Lars Kotthoff

Diff between llama versions 0.7.1 dated 2014-08-13 and 0.7.2 dated 2014-09-20

 DESCRIPTION                                      |    8 ++--
 MD5                                              |   42 +++++++++++------------
 NEWS                                             |    9 ++++
 R/input.R                                        |   32 ++++++++++++-----
 R/misc.R                                         |    8 +++-
 R/misclassificationPenalties.R                   |    9 +++-
 R/parscores.R                                    |   17 ++++++---
 R/successes.R                                    |   19 ++++++----
 inst/manual/llama.pdf                            |binary
 man/cluster.Rd                                   |    2 -
 man/input.Rd                                     |   11 ++++++
 man/llama-package.Rd                             |    2 -
 man/misc.Rd                                      |   17 +++++----
 man/misclassificationPenalties.Rd                |   10 +++++
 man/parscores.Rd                                 |   25 ++++++++++---
 man/satsolvers.Rd                                |    4 +-
 man/successes.Rd                                 |   29 +++++++++++----
 tests/testthat/test.input.R                      |   35 ++++++++++++++++++-
 tests/testthat/test.misc.R                       |    8 ++++
 tests/testthat/test.misclassificationPenalties.R |   11 ++++++
 tests/testthat/test.parscores.R                  |   29 ++++++++++++---
 tests/testthat/test.successes.R                  |   27 +++++++++++---
 22 files changed, 266 insertions(+), 88 deletions(-)

More information about llama at CRAN
Permanent link

Package plink (with last version 1.3-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-07-25 1.3-1
2011-02-12 1.3-0
2010-10-19 1.2-7
2010-09-15 1.2-6
2010-08-13 1.2-5
2010-07-26 1.2-4
2010-04-19 1.2-3
2009-10-23 1.2-2
2009-09-29 1.2-1
2009-08-19 1.2-0
2009-08-07 1.1-6
2009-07-26 1.1-5
2009-06-19 1.1-4
2009-06-14 1.1-3
2009-06-02 1.1-2
2009-05-28 1.1-1
2009-05-15 1.1-0
2009-04-19 1.0.0
2009-01-26 0.1-1
2008-09-28 0.1-0
2008-09-10 0.0-6
2008-09-08 0.0-5
2007-12-24 0.0-4
2007-12-02 0.0-3
2007-09-21 0.0-2
2007-09-13 0.0-1
2007-09-04 0.0-0

Permanent link
Package rdyncall (with last version 0.7.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-09-12 0.7.5
2011-12-13 0.7.4
2011-07-23 0.7.3
2011-04-27 0.7.2
2011-04-26 0.7.0

Permanent link
Package playitbyr (with last version 0.2-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-05-03 0.2-1
2012-05-02 0.2-0
2011-07-23 0.1-1

Permanent link
Package csound (with last version 0.1-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-04-30 0.1-1
2011-12-19 0.1-0

Permanent link
New package vdmR with initial version 0.1.0
Package: vdmR
Type: Package
Title: Visual Data Mining Tools for R
Version: 0.1.0
Date: 2014-08-14
Author: Tomokazu Fujino
Maintainer: Tomokazu Fujino
Description: This provides web based visual data mining tools by adding interactive functions to ggplot2 graphics. Brushing and linking between the multiple plots is one of the main feature of this package. Currently scatter plot, histogram, parallel coordinate plot and choropleth map are supported.
VignetteBuilder: knitr
Depends: R (>= 3.0.0)
Imports: ggplot2, plyr, maptools, gridSVG, grid, rjson, GGally, Rook, dplyr
Suggests: testthat, rgeos, knitr
License: GPL-2
Packaged: 2014-09-20 07:26:23 UTC; fujino
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 12:14:16

More information about vdmR at CRAN
Permanent link

New package RRreg with initial version 0.1.3
Package: RRreg
Type: Package
Title: Correlation and Regression Analyses of Randomized Response Designs
Authors@R: c(person( given="Daniel W.",family="Heck",email="dheck@mail.uni-mannheim.de", role=c("aut","cre")), person(given="Morten",family="Moshagen",email="moshagen@uni-mannheim.de", rol=c("aut")))
Author: Daniel W. Heck [aut, cre], Morten Moshagen [aut]
Maintainer: Daniel W. Heck
Depends: R (>= 3.0.0)
Imports: parallel, doParallel, foreach
Suggests: knitr
Description: RRreg provides univariate and multivariate methods to analyze randomized response (RR) survey designs (e.g., Warner, S. L. (1965). Randomized response: A survey technique for eliminating evasive answer bias. Journal of the American Statistical Association, 60, 63‚Äď69). Besides univariate estimates of true proportions, RR variables can be used for correlations, as dependent variable in a logistic regression and as predictors in a linear regression. For simulation and bootstrap purposes, RR data can be generated according to several models.
License: GPL-2
Encoding: UTF-8
LazyLoad: yes
URL: https://dl.dropboxusercontent.com/u/21456540/RRreg/index.html
VignetteBuilder: knitr
Version: 0.1.3
Date: 2014-09-20
Collate: 'RRcheck.R' 'RRcor.models.R' 'RRcor.R' 'RRgen.R' 'RRlin.getPW.R' 'RRlin.ll.R' 'RRlin.R' 'RRlog.CDM.R' 'RRlog.FR.R' 'RRlog.Kuk.R' 'RRlog.Mangat.R' 'RRlog.R' 'RRlog.SLD.R' 'RRlog.UQTknown.R' 'RRlog.UQTunknown.R' 'RRlog.Warner.R' 'RRreg-package.R' 'RRsimu.R' 'RRuni.models.R' 'RRuni.R'
Packaged: 2014-09-20 09:53:03 UTC; Daniel
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 12:14:12

More information about RRreg at CRAN
Permanent link

New package REDCapR with initial version 0.4-28
Package: REDCapR
Title: Interaction between R and REDCap
Description: Encapsulates functions to streamline calls from R
Version: 0.4-28
Date: 2014-09-19
Authors@R: c(person("Will", "Beasley", role = c("aut", "cre"), email = "wibeasley@hotmail.com"), person("David", "Bard", role = "ctb"), person("Thomas", "Wilson", role = "ctb"), person(given="John J", family="Aponte", role = "ctb"), person("Rollie", "Parrish", role = "ctb"))
Author: Will Beasley [aut, cre], David Bard [ctb], Thomas Wilson [ctb], John J Aponte [ctb], Rollie Parrish [ctb]
Maintainer: Will Beasley
URL: http://ouhsc.edu/bbmc/
Depends: R(>= 3.0.0), stats
Imports: httr, plyr, stringr
Suggests: devtools, knitr, methods, RODBC, testit, testthat
License: GPL-3
LazyData: TRUE
VignetteBuilder: knitr
Repository: CRAN
Repository/R-Forge/Project: redcapr
Repository/R-Forge/Revision: 23
Repository/R-Forge/DateTimeStamp: 2014-09-19 15:03:52
Date/Publication: 2014-09-20 07:19:22
Packaged: 2014-09-19 15:50:29 UTC; rforge
NeedsCompilation: no

More information about REDCapR at CRAN
Permanent link

New package OrdLogReg with initial version 1.1
Package: OrdLogReg
Type: Package
Title: Ordinal Logic Regression
Version: 1.1
Date: 2014-09-05
Author: Bethany Wolf
Maintainer: Bethany Wolf
Depends: LogicReg
Description: Method for develops a classification model for ordinal responses based on logic regression.
License: GPL-2
Packaged: 2014-09-19 16:02:04 UTC; wolfb
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 07:18:07

More information about OrdLogReg at CRAN
Permanent link

New package MST with initial version 1.0
Package: MST
Type: Package
Title: Multivariate Survival Trees
Version: 1.0
Date: 2014-09-19
Author: Xiaogang Su, Peter Calhoun, and Juanjuan Fan
Maintainer: Peter Calhoun
Description: Constructs trees for multivariate survival data using marginal and frailty models
License: GPL-2
Imports: survival, MASS
Packaged: 2014-09-19 22:28:18 UTC; pcalhoun
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 07:14:13

More information about MST at CRAN
Permanent link

Package mp updated to version 0.1.2 with previous version 0.1 dated 2014-08-03

Title: Multidimensional Projection Techniques
Description: Implementation of multidimensional projection techniques
Author: Francisco M. Fatore, Samuel G. Fadel
Maintainer: Francisco M. Fatore

Diff between mp versions 0.1 dated 2014-08-03 and 0.1.2 dated 2014-09-20

 DESCRIPTION        |   14 ++++---
 MD5                |   11 +++--
 NAMESPACE          |    1 
 R/forceScheme.R    |  101 ++++++++++++++++-------------------------------------
 R/mp.R             |only
 man/forceScheme.Rd |   21 +++++++----
 man/mp.Rd          |only
 src                |only
 8 files changed, 63 insertions(+), 85 deletions(-)

More information about mp at CRAN
Permanent link

Package Density.T.HoldOut updated to version 2.00 with previous version 1.02 dated 2014-04-18

Title: Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation
Description: Implementation in the density framework of the non-combinatorial algorithm and its greedy version, introduced by Magalhães and Rozenholc (2014), for T-estimation Hold-Out proposed in Birgé (2006, Section 9). The package provide an implementation which uses several families of estimators (regular and irregular histograms, kernel estimators) which may be used alone or combined. As a complement, provides also a comparison with other Held-Out derived from least-squares and maximum-likelihood. This package implements also the T-estimation Hold-Out derived from the test introduced in Baraud (2011).
Author: Nelo Magalh√£es (Univ. Paris Sud 11 - INRIA team Select) and Yves Rozenholc (Univ. Paris Descartes - INRIA team Select)
Maintainer: Nelo Magalh√£es

Diff between Density.T.HoldOut versions 1.02 dated 2014-04-18 and 2.00 dated 2014-09-20

 DESCRIPTION          |   10 
 MD5                  |    6 
 R/DensityTestim.R    | 1415 +++++++++++++++++++++++++--------------------------
 man/DensityTestim.Rd |   37 -
 4 files changed, 742 insertions(+), 726 deletions(-)

More information about Density.T.HoldOut at CRAN
Permanent link

Fri, 19 Sep 2014

Package intervals updated to version 0.15.0 with previous version 0.14.0 dated 2013-03-07

Title: Tools for working with points and intervals
Description: Tools for working with and comparing sets of points and intervals.
Author: Richard Bourgon
Maintainer: Edzer Pebesma

Diff between intervals versions 0.14.0 dated 2013-03-07 and 0.15.0 dated 2014-09-19

 DESCRIPTION                     |   18 +++++++++---------
 MD5                             |   15 +++++++++------
 NAMESPACE                       |   16 ++++------------
 build                           |only
 inst/doc/intervals_overview.R   |only
 inst/doc/intervals_overview.pdf |binary
 src/plot_overlap.cpp            |    7 +------
 src/reduce.cpp                  |   11 ++++-------
 src/which_nearest.cpp           |    6 +++---
 vignettes                       |only
 10 files changed, 30 insertions(+), 43 deletions(-)

More information about intervals at CRAN
Permanent link

Package spdep updated to version 0.5-77 with previous version 0.5-74 dated 2014-06-06

Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial autocorrelation, including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G and multicoloured join count statistics, local Moran's I and Getis/Ord G, saddlepoint approximations and exact tests for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, impact measures for lag models, weighted and unweighted SAR and CAR spatial regression models, semi-parametric and Moran eigenvector spatial filtering, GM SAR error models, and generalized spatial two stage least squares models.
Author: Roger Bivand [cre, aut], Micah Altman [ctb], Luc Anselin [ctb], Renato Assunção [ctb], Olaf Berke [ctb], Andrew Bernat [ctb], Guillaume Blanchet [ctb], Eric Blankmeyer [ctb], Marilia Carvalho [ctb], Bjarke Christensen [ctb], Yongwan Chun [ctb], Carsten Dormann [ctb], Stéphane Dray [ctb], Virgilio Gómez-Rubio [ctb], Rein Halbersma [ctb], Elias Krainski [ctb], Pierre Legendre [ctb], Nicholas Lewin-Koh [ctb], Hongfei Li [ctb], Jielai Ma [ctb], Giovanni Millo [ctb], Werner Mueller [ctb], Hisaji Ono [ctb], Pedro Peres-Neto [ctb], Gianfranco Piras [ctb], Markus Reder [ctb], Michael Tiefelsdorf [ctb], Danlin Yu [ctb]
Maintainer: Roger Bivand

Diff between spdep versions 0.5-74 dated 2014-06-06 and 0.5-77 dated 2014-09-19

 ChangeLog                     |   32 +++++++++++++++++++++++++
 DESCRIPTION                   |   15 ++++++-----
 MD5                           |   53 +++++++++++++++++++++---------------------
 NAMESPACE                     |    4 +++
 R/aple.mc.R                   |    2 -
 R/bptest.sarlm.R              |    2 -
 R/dnearneigh.R                |   11 +++++++-
 R/impacts.R                   |    4 +--
 R/jacobian.R                  |   36 ++++++++++++++++++++--------
 R/knearneigh.R                |    5 ++-
 R/listw2sn.R                  |   18 +++++++-------
 R/nb2listw.R                  |   16 +++++++-----
 R/nbcosts.R                   |    4 +--
 R/prunecost.R                 |    4 +--
 R/tri2nb.R                    |    6 ++++
 build/vignette.rds            |binary
 inst/ChangeLog                |   32 +++++++++++++++++++++++++
 inst/copyright.diff           |only
 inst/doc/CO69.pdf             |binary
 inst/doc/SpatialFiltering.pdf |binary
 inst/doc/nb.pdf               |binary
 inst/doc/sids.pdf             |binary
 man/dnearneigh.Rd             |    5 ++-
 man/do_ldet.Rd                |    4 +++
 man/nb2listw.Rd               |    7 +++--
 man/summary.nb.Rd             |    2 -
 src/dnn.c                     |    8 ++++--
 src/soigraph.c                |    5 ++-
 28 files changed, 197 insertions(+), 78 deletions(-)

More information about spdep at CRAN
Permanent link

Package spMC updated to version 0.3.4 with previous version 0.3.2 dated 2014-08-22

Title: Continuous Lag Spatial Markov Chains
Description: The main goal of this package is to provide a set of functions for 1) the stratum lengths analysis along a chosen direction, 2) fast estimation of continuous lag spatial Markov chains model parameters and probability computing (also for large data sets), 3) transition probability maps and transiograms drawing, 4) simulation methods for categorical random fields.
Author: Luca Sartore
Maintainer: Luca Sartore

Diff between spMC versions 0.3.2 dated 2014-08-22 and 0.3.4 dated 2014-09-19

 DESCRIPTION             |    8 
 MD5                     |   36 ++--
 NEWS                    |   37 ++++
 R/is.transiogram.R      |    6 
 R/plot.transiogram.R    |   34 +++-
 R/quench.R              |only
 R/sim_ck.R              |   81 ---------
 R/sim_ik.R              |   81 ---------
 R/transiogram.R         |  122 ++++++++++++--
 man/plot.transiogram.Rd |    9 -
 man/quench.Rd           |only
 man/sim_ck.Rd           |   21 --
 man/sim_ik.Rd           |   20 --
 man/spMC-package.Rd     |    4 
 man/transiogram.Rd      |    1 
 src/Makevars            |    2 
 src/spMC.c              |  404 +-----------------------------------------------
 src/spMC.h              |   47 ++++-
 src/trans.h             |only
 src/wfun.h              |only
 tests/spMC-Ex.R         |   20 +-
 21 files changed, 299 insertions(+), 634 deletions(-)

More information about spMC at CRAN
Permanent link

New package opentraj with initial version 1.0
Package: opentraj
Type: Package
Title: Tools for Creating and Analysing Air Trajectory Data
Version: 1.0
Date: 2014-08-22
Author: Thalles Santos Silva
Maintainer: Thalles Silva
Description: opentraj uses the Hybrid Single Particle Lagrangian Integrated Trajectory Model (HYSPLIT) for computing simple air parcel trajectories. The functions in this package allow users to run HYSPLIT for trajectory calculations, as well as get its results, directly from R without using any GUI interface.
License: GPL-2
Imports: plyr, maptools, openair, raster, rgdal, reshape, doParallel, parallel, foreach, sp
LazyData: yes
Packaged: 2014-09-19 13:19:58 UTC; thalles
Depends: R (>= 2.10)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 17:35:43

More information about opentraj at CRAN
Permanent link

Package gdsfmt updated to version 1.1.0.1 with previous version 1.1.0 dated 2014-09-11

Title: R Interface to CoreArray Genomic Data Structure (GDS) files
Description: This package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory. The gdsfmt package offers the efficient operations specifically designed for integers with less than 8 bits, since a single genetic/genomic variant, such like single-nucleotide polymorphism, usually occupies fewer bits than a byte. Data compression and decompression are also supported. It is allowed to read a GDS file in parallel with multiple R processes supported by the parallel package.
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng

Diff between gdsfmt versions 1.1.0 dated 2014-09-11 and 1.1.0.1 dated 2014-09-19

 DESCRIPTION     |    8 ++++----
 MD5             |    4 ++--
 src/dPlatform.h |    4 ++++
 3 files changed, 10 insertions(+), 6 deletions(-)

More information about gdsfmt at CRAN
Permanent link

New package BOIN with initial version 1.0
Package: BOIN
Type: Package
Title: Bayesian Optimal Interval Design for Phase I Clinical Trials
Version: 1.0
Date: 2014-08-14
Author: Ying Yuan and Suyu Liu
Maintainer: Ying Yuan
Description: The Bayesian optimal interval (BOIN) design is a novel phase I clinical trial design for finding the maximum tolerated dose (MTD). The BOIN design is motivated by the top priority and concern of clinicians when testing a new drug, which is to effectively treat patients and minimize the chance of exposing them to subtherapeutic or overly toxic doses. The prominent advantage of the BOIN design is that it achieves simplicity and superior performance at the same time. The BOIN design is algorithm-based and can be implemented in a simple way similar to the traditional 3+3 design. The BOIN design yields average performance comparable to the continual reassessment method (CRM, one of the best model-based design) in terms of selecting the MTD, but has a substantially lower risk of assigning patients to subtherapeutic or overly toxic doses.
License: GPL-2
Packaged: 2014-09-19 14:36:20 UTC; yingyuan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 17:28:46

More information about BOIN at CRAN
Permanent link

Package wnominate (with last version 0.98) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-01-17 0.98
2011-07-23 0.96
2011-05-26 0.95
2007-09-01 0.94
2007-01-13 0.93

Permanent link
Package wild1 (with last version 1.09) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-02-01 1.09
2010-12-04 1.08
2010-11-22 1.07

Permanent link
Package varcompci (with last version 1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-05-05 1.0.1

Permanent link
Package weathermetrics (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-08-07 1.0

Permanent link
Package speedRlibTF (with last version 0.3-39) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-03-31 0.3-39

Permanent link
Package survJamda (with last version 1.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-03-08 1.1.2
2011-01-19 1.1.1
2010-12-06 1.0.1
2010-10-10 1.0

Permanent link
Package scaleboot (with last version 0.3-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-05-16 0.3-3
2008-02-05 0.3-2
2006-11-15 0.2-2

Permanent link
Package survJamda.data (with last version 1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-02-11 1.0.1
2010-10-10 1.0

Permanent link
Package treethresh (with last version 0.1-7) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-08-31 0.1-7
2012-08-29 0.1-6
2010-01-07 0.1-5
2010-01-04 0.1-4
2009-07-26 0.1-3

Permanent link
Package standGL (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-06-09 1.1
2011-11-17 1.0

Permanent link
Package rcqp (with last version 0.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-10-19 0.3
2012-06-26 0.1

Permanent link
Package sugaR (with last version 0.0-5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2009-06-07 0.0-5
2009-06-02 0.0-4

Permanent link
Package roxygen (with last version 0.1-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-12-23 0.1-3
2009-11-12 0.1-2
2008-08-31 0.1

Permanent link
Package survBayes (with last version 0.2.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2009-06-05 0.2.2
2009-02-23 0.2.1.1
2007-02-22 0.2.1

Permanent link
Package randomUniformForest updated to version 1.0.8 with previous version 1.0.6 dated 2014-05-29

Title: Random Uniform Forests for Classification and Regression
Description: Ensemble model, for classification and regression, based on a forest of unpruned and randomized binary trees. Each tree is grown by sampling, with replacement, a set of variables at each node. Each cut-point is generated randomly, according to the Uniform distribution on the support of each candidate variable. Optimal random node is, then, selected by maximizing information gain (classification) or minimizing 'L2' (or 'L1') distance (regression). Data are either bootstrapped or sub-sampled for each tree. Random Uniform Forests are aimed to lower correlation between trees, to offer more details about variable importance and selection and to allow native incremental learning.
Author: Saip Ciss
Maintainer: Saip Ciss

Diff between randomUniformForest versions 1.0.6 dated 2014-05-29 and 1.0.8 dated 2014-09-19

 randomUniformForest-1.0.6/randomUniformForest/R/OnliningRandomUniformForests.r          |only
 randomUniformForest-1.0.6/randomUniformForest/R/genericFunctions.r                      |only
 randomUniformForest-1.0.8/randomUniformForest/DESCRIPTION                               |   16 
 randomUniformForest-1.0.8/randomUniformForest/MD5                                       |   43 
 randomUniformForest-1.0.8/randomUniformForest/NEWS                                      |only
 randomUniformForest-1.0.8/randomUniformForest/R/DecisionTreesCPP.R                      |  174 +-
 randomUniformForest-1.0.8/randomUniformForest/R/OnliningRandomUniformForests.R          |only
 randomUniformForest-1.0.8/randomUniformForest/R/RandomUniformForestsCPP.R               |  759 ++++++----
 randomUniformForest-1.0.8/randomUniformForest/R/genericFunctions.R                      |only
 randomUniformForest-1.0.8/randomUniformForest/build                                     |only
 randomUniformForest-1.0.8/randomUniformForest/inst/doc                                  |only
 randomUniformForest-1.0.8/randomUniformForest/man/bCI.Rd                                |    4 
 randomUniformForest-1.0.8/randomUniformForest/man/fillNA2.randomUniformForest.Rd        |   14 
 randomUniformForest-1.0.8/randomUniformForest/man/importance.randomUniformForest.Rd     |    2 
 randomUniformForest-1.0.8/randomUniformForest/man/internalFunctions.Rd                  |    6 
 randomUniformForest-1.0.8/randomUniformForest/man/partialDependenceBetweenPredictors.Rd |   20 
 randomUniformForest-1.0.8/randomUniformForest/man/partialDependenceOverResponses.Rd     |    8 
 randomUniformForest-1.0.8/randomUniformForest/man/postProcessingVotes.Rd                |    4 
 randomUniformForest-1.0.8/randomUniformForest/man/predict.randomUniformForest.Rd        |   10 
 randomUniformForest-1.0.8/randomUniformForest/man/rUniformForest.big.Rd                 |    2 
 randomUniformForest-1.0.8/randomUniformForest/man/rUniformForest.combine.Rd             |    6 
 randomUniformForest-1.0.8/randomUniformForest/man/randomUniformForest-package.Rd        |   15 
 randomUniformForest-1.0.8/randomUniformForest/man/randomUniformForest.Rd                |   75 
 randomUniformForest-1.0.8/randomUniformForest/man/roc.curve.Rd                          |   27 
 randomUniformForest-1.0.8/randomUniformForest/man/simulationData.Rd                     |    6 
 randomUniformForest-1.0.8/randomUniformForest/vignettes                                 |only
 26 files changed, 736 insertions(+), 455 deletions(-)

More information about randomUniformForest at CRAN
Permanent link

New package nat.nblast with initial version 1.5
Package: nat.nblast
Type: Package
Title: NeuroAnatomy Toolbox (nat) Extension for Assessing Neuron Similarity and Clustering
Version: 1.5
Date: 2014-09-18
Author: Greg Jefferis and James Manton
Maintainer: James Manton
Description: Extends package nat (NeuroAnatomy Toolbox) by providing a collection of NBLAST-related functions.
Depends: R (>= 2.15.1), rgl, methods, nat (>= 1.5.12)
Imports: nabor, dendroextras, plyr, spam
Suggests: bigmemory, ff, testthat
License: GPL-3
LazyData: yes
Packaged: 2014-09-19 11:20:01 UTC; jefferis
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 14:57:33

More information about nat.nblast at CRAN
Permanent link

New package multipleNCC with initial version 1.0
Package: multipleNCC
Type: Package
Title: Weighted Cox-regression for nested case-control data
Version: 1.0
Date: 2014-08-28
Author: Nathalie C. Stoer, Sven Ove Samuelsen
Maintainer: Nathalie C. Stoer
Description: This package fit Cox proportional hazard models with a weighted partial likelihood. It handles one or multiple endpoints, additional matching and makes it possible to reuse controls for other endpoints.
Depends: survival, gam
License: GPL-2
Packaged: 2014-09-19 12:44:29 UTC; Nathalie
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 15:06:25

More information about multipleNCC at CRAN
Permanent link

New package confidence with initial version 1.0-0
Package: confidence
Type: Package
Title: Confidence Estimation of Environmental State Classifications
Description: Functions for estimating and reporting multiyear averages and corresponding confidence intervals and distributions. A potential use case is reporting the chemical and ecological status of surface waters according to the European Water Framework Directive.
Version: 1.0-0
Date: 2014-09-18
Authors@R: c(person(given = c("Willem", "M.", "G.", "M."), family = "van Loon", email = "willem.van.loon@rws.nl", role = c("aut", "cph")), person(given = c("Dennis", "J.", "J."), family = "Walvoort", email = "dennis.Walvoort@wur.nl", role = c("aut", "cre")))
Depends: R (>= 3.0.0), tcltk
Imports: knitr, markdown, plyr, xtable, ggplot2
Suggests: testthat
VignetteBuilder: knitr
License: GPL (>= 3)
Packaged: 2014-09-19 12:09:37 UTC; dennis
Author: Willem M. G. M. van Loon [aut, cph], Dennis J. J. Walvoort [aut, cre]
Maintainer: Dennis J. J. Walvoort
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 14:57:31

More information about confidence at CRAN
Permanent link

Package ppstat (with last version 0.9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-04-07 0.9
2012-08-20 0.8.1

Permanent link
Package qfa (with last version 0.0-10) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-06-21 0.0-10

Permanent link
Package processdata (with last version 0.8.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-04-02 0.8.2
2012-05-11 0.8.1
2012-03-02 0.8
2010-10-09 0.7

Permanent link
Package oc (with last version 0.93) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-01-24 0.93

Permanent link
Package iwtp (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-03-02 1.0.0

Permanent link
Package likert (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-25 1.1

Permanent link
Package latticist (with last version 0.9-44) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-01-04 0.9-44
2010-06-30 0.9-43
2008-11-14 0.9-42
2008-11-07 0.9-41
2008-11-04 0.9-40

Permanent link
Package lancet.iraqmortality (with last version 0.2-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2007-06-21 0.2-0

Permanent link
Package mfp (with last version 1.4.9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-11-29 1.4.9
2010-09-21 1.4.8
2008-08-31 1.4.6
2008-06-26 1.4.5
2008-04-07 1.4.4
2007-12-12 1.4.3
2007-11-13 1.4.1
2007-11-13 1.4.2
2007-05-18 1.4.0

Permanent link
Package maticce (with last version 1.0-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-01-11 1.0-3

Permanent link
Package RUnit updated to version 0.4.27 with previous version 0.4.26 dated 2010-09-16

Title: R Unit test framework
Description: R functions implementing a standard Unit Testing framework, with additional code inspection and report generation tools
Author: Matthias Burger , Klaus Juenemann , Thomas Koenig
Maintainer: ORPHANED

Diff between RUnit versions 0.4.26 dated 2010-09-16 and 0.4.27 dated 2014-09-19

 RUnit-0.4.26/RUnit/.cvsignore          |only
 RUnit-0.4.26/RUnit/inst/doc/Makefile   |only
 RUnit-0.4.26/RUnit/inst/doc/RUnit.dvi  |only
 RUnit-0.4.26/RUnit/inst/doc/RUnit.out  |only
 RUnit-0.4.26/RUnit/inst/doc/RUnit.ps   |only
 RUnit-0.4.26/RUnit/inst/doc/RUnit.tex  |only
 RUnit-0.4.27/RUnit/DESCRIPTION         |   16 ++++++-----
 RUnit-0.4.27/RUnit/MD5                 |only
 RUnit-0.4.27/RUnit/NAMESPACE           |    4 +-
 RUnit-0.4.27/RUnit/R/00Init.r          |   10 +-----
 RUnit-0.4.27/RUnit/R/runit.r           |   48 ++++++++++++++++-----------------
 RUnit-0.4.27/RUnit/build               |only
 RUnit-0.4.27/RUnit/inst/doc/RUnit.R    |only
 RUnit-0.4.27/RUnit/inst/doc/RUnit.pdf  |binary
 RUnit-0.4.27/RUnit/man/textProtocol.Rd |    4 +-
 RUnit-0.4.27/RUnit/vignettes           |only
 16 files changed, 40 insertions(+), 42 deletions(-)

More information about RUnit at CRAN
Permanent link

Package pcaPP updated to version 1.9-50 with previous version 1.9-49 dated 2013-03-22

Title: Robust PCA by Projection Pursuit
Description: Robust PCA by Projection Pursuit
Author: Peter Filzmoser, Heinrich Fritz, Klaudius Kalcher
Maintainer: ORPHANED

Diff between pcaPP versions 1.9-49 dated 2013-03-22 and 1.9-50 dated 2014-09-19

 pcaPP-1.9-49/pcaPP/inst/doc/load.package.name.R |only
 pcaPP-1.9-49/pcaPP/inst/doc/matlab.example.txt  |only
 pcaPP-1.9-49/pcaPP/matlab                       |only
 pcaPP-1.9-50/pcaPP/DESCRIPTION                  |   16 +++++----
 pcaPP-1.9-50/pcaPP/MD5                          |   41 +++++-------------------
 pcaPP-1.9-50/pcaPP/NAMESPACE                    |    8 ++++
 pcaPP-1.9-50/pcaPP/build                        |only
 pcaPP-1.9-50/pcaPP/inst/doc/matlab.R            |only
 pcaPP-1.9-50/pcaPP/inst/doc/matlab.pdf          |binary
 pcaPP-1.9-50/pcaPP/man/PCdiagplot.Rd            |    3 +
 pcaPP-1.9-50/pcaPP/man/l1median_NLM.Rd          |   19 +++++++----
 pcaPP-1.9-50/pcaPP/vignettes                    |only
 12 files changed, 40 insertions(+), 47 deletions(-)

More information about pcaPP at CRAN
Permanent link

Package beanplot updated to version 1.2 with previous version 1.1 dated 2008-11-06

Title: Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
Description: Plots univariate comparison graphs, an alternative to boxplot/stripchart/violin plot.
Author: Peter Kampstra
Maintainer: Peter Kampstra

Diff between beanplot versions 1.1 dated 2008-11-06 and 1.2 dated 2014-09-19

 beanplot-1.1/beanplot/inst/doc/beanplot.bib   |only
 beanplot-1.2/beanplot/DESCRIPTION             |   27 +++++++++++++++-----------
 beanplot-1.2/beanplot/MD5                     |only
 beanplot-1.2/beanplot/R/beanplot.R            |   18 ++++++++++-------
 beanplot-1.2/beanplot/R/beanplotbeanlines.R   |    3 ++
 beanplot-1.2/beanplot/R/fixcolorvector.R      |    4 +--
 beanplot-1.2/beanplot/R/seemslog.R            |   17 ++++++++++------
 beanplot-1.2/beanplot/build                   |only
 beanplot-1.2/beanplot/inst/doc/beanplot.R     |only
 beanplot-1.2/beanplot/inst/doc/beanplot.pdf   |binary
 beanplot-1.2/beanplot/man/beanplot-package.Rd |    6 ++---
 beanplot-1.2/beanplot/man/beanplot.Rd         |   19 ++++++++++++------
 beanplot-1.2/beanplot/vignettes               |only
 13 files changed, 59 insertions(+), 35 deletions(-)

More information about beanplot at CRAN
Permanent link

Package gWidgetsWWW (with last version 0.0-23) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-06-09 0.0-23
2011-01-12 0.0-22
2010-09-02 0.0-21
2010-06-19 0.0-19
2010-06-18 0.0-18
2010-06-17 0.0-17
2009-12-10 0.0-14
2009-11-13 0.0-13
2009-11-01 0.0-12
2009-08-23 0.0-11
2009-08-16 0.0-9
2009-08-08 0.0-8
2009-03-03 0.0-6
2009-02-10 0.0-5
2008-08-06 0.0-3
2008-07-28 0.0-2
2008-07-20 0.0-1

Permanent link
Package anoint (with last version 1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-03-07 1.3
2013-01-10 1.2
2012-04-24 1.0

Permanent link
Package cacher (with last version 1.1-2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-03-21 1.1-2
2010-08-27 1.1-1
2009-06-24 1.1
2008-12-21 1.0
2008-04-29 0.2-1
2008-04-04 0.1-2
2007-11-20 0.1-1

Permanent link
Package cusp (with last version 2.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2009-11-06 2.2

Permanent link
Package cwhmisc (with last version 4.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-01-03 4.0

Permanent link
Package acer (with last version 0.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-08-22 0.1.2
2011-12-16 0.1

Permanent link
Package basicspace (with last version 0.07) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-01-02 0.07
2012-08-02 0.06
2012-01-17 0.05
2011-07-23 0.03
2011-01-26 0.02

Permanent link
Package Rknots (with last version 1.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-02-27 1.2.1
2011-12-27 1.2
2011-09-06 1.1
2011-07-04 1.0

Permanent link
Package StateTrace (with last version 1.0-4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-05-04 1.0-4
2012-01-03 1.0-2
2011-11-30 1.0-1
2011-11-29 1.0

Permanent link
Package anominate (with last version 0.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-04-27 0.4
2014-04-13 0.3

Permanent link
Package sdmvspecies updated to version 0.3.1 with previous version 0.3 dated 2014-07-06

Title: Create virtual species for species distribution modelling
Description: This package includes several methods to create virtual species distribution map. Those maps can be used for species distribution modelling (SDM) study. SDM use environmental data for sites of occurrence of a species to predict all the sites where the environmental conditions are suitable for the species to persist, and may be expected to occur.
Author: Xiaoquan Kong, Renyan Duan, Minyi Huang
Maintainer: Howl Anderson

Diff between sdmvspecies versions 0.3 dated 2014-07-06 and 0.3.1 dated 2014-09-19

 DESCRIPTION                         |    6 +++---
 MD5                                 |   20 ++++++++++----------
 R/auto_PCA.R                        |   18 +++++-------------
 R/rescale.R                         |   14 ++++++++++----
 inst/doc/sdmvspecies.R              |   12 ++++++------
 inst/doc/sdmvspecies.Rnw            |   16 ++++++++--------
 inst/doc/sdmvspecies.pdf            |binary
 inst/tests/testthat/test_auto_PCA.R |    4 ++--
 inst/tests/testthat/test_rescale.R  |    2 +-
 man/autoPCA.Rd                      |    4 ++--
 vignettes/sdmvspecies.Rnw           |   16 ++++++++--------
 11 files changed, 55 insertions(+), 57 deletions(-)

More information about sdmvspecies at CRAN
Permanent link

Package Rhpc updated to version 0.14-261 with previous version 0.14-256 dated 2014-09-12

Title: An R package for High-Performance Computing
Description: Rhpc_lapply, Rhpc_lapplyLB and Rhpc_worker_call using MPI provides better HPC environment on R(works fast on HPC). and this package supports long vector, can deal with slightly big data.
Author: Junji NAKANO and Eiji NAKAMA
Maintainer: Ei-ji Nakama

Diff between Rhpc versions 0.14-256 dated 2014-09-12 and 0.14-261 dated 2014-09-19

 ChangeLog               |    6 +++++
 DESCRIPTION             |    8 +++---
 MD5                     |   14 ++++++------
 configure               |   32 ++++++++++-----------------
 configure.ac            |   32 +++++++++++----------------
 src/RhpcMPI.c           |   55 ++++++++++++++++++++++++++++++++++--------------
 src/common/Rhpc.h       |    2 -
 src/worker/RhpcWorker.c |   41 +++++++++++++++++++++++------------
 8 files changed, 110 insertions(+), 80 deletions(-)

More information about Rhpc at CRAN
Permanent link

Package RcmdrPlugin.NMBU updated to version 1.7.5 with previous version 1.7.4 dated 2014-09-16

Title: R Commander Plug-In for Statistics at NMBU
Description: This package provides an Rcmdr "plug-in" extending some functions of linear models and providing an interface to PLS, LDA and QDA.
Author: Kristian Hovde Liland, Solve SśbÝ
Maintainer: Kristian Hovde Liland

Diff between RcmdrPlugin.NMBU versions 1.7.4 dated 2014-09-16 and 1.7.5 dated 2014-09-19

 DESCRIPTION        |    8 ++++----
 MD5                |    4 ++--
 R/NMBU.Utilities.R |    2 +-
 3 files changed, 7 insertions(+), 7 deletions(-)

More information about RcmdrPlugin.NMBU at CRAN
Permanent link

New package iki.dataclim with initial version 1.0
Package: iki.dataclim
Type: Package
Title: Consistency, Homogeneity and Summary Statistics of Climatological Data
Version: 1.0
Date: 2014-07-18
Author: Boris Orlowsky
Maintainer: Boris Orlowsky
URL: www.climate-babel.org
Description: The package offers an S4 infrastructure to store climatological station data of various temporal aggregation scales. In-built quality control and homogeneity tests follow the methodology from the European Climate Assessment & Dataset project. Wrappers for climate indices defined by the Expert Team on Climate Change Detection and Indices (ETCCDI), a quick summary of important climate statistics and climate diagram plots provide a fast overview of climatological characteristics of the station.
License: GPL-3
Copyright: Boris Orlowsky
Depends: R (>= 3.0.0)
Imports: methods, zoo, lubridate, climdex.pcic (>= 1.1-1), PCICt
Packaged: 2014-09-18 20:02:19 UTC; oboris
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 10:33:43

More information about iki.dataclim at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.