Thu, 24 Apr 2014

Package SurvRegCensCov updated to version 1.3 with previous version 1.2 dated 2014-04-07

Title: Weibull Regression for a Right-Censored Endpoint with Interval-Censored Covariate
Description: The main function of this package allows estimation of a Weibull Regression for a right-censored endpoint, one interval-censored covariate, and an arbitrary number of non-censored covariates. Additional functions allow to switch between different parametrizations of Weibull regression used by different R functions, inference for the mean difference of two arbitrarily censored Normal samples, and estimation of canonical parameters from censored samples for several distributional assumptions.
Author: Stanislas Hubeaux and Kaspar Rufibach
Maintainer: Stanislas Hubeaux

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Package glcm updated to version 0.3.1 with previous version 0.2 dated 2014-02-17

Title: Calculate textures from grey-level co-occurrence matrices (GLCMs) in R
Description: Enables calculation of image textures derived from grey-level co-occurrence matrices (GLCMs) in R. The texture calculation is coded in C++ to optimize computation time.
Author: Alex Zvoleff [aut, cre]
Maintainer: Alex Zvoleff

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New package falcon with initial version 0.1
Package: falcon
Version: 0.1
Date: 2014-03-20
Title: Finding Allele-specific Copy Number in Next-Generation Sequencing Data
Author: Hao Chen and Nancy R. Zhang
Maintainer: Hao Chen
Depends: R (>= 3.0.1)
Description: This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.
License: GPL (>= 2)
Packaged: 2014-04-24 18:46:12 UTC; hao
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-24 22:59:03

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Package verification updated to version 1.38 with previous version 1.37 dated 2014-04-02

Title: Weather Forecast Verification Utilities.
Description: This package contains utilities for verification of discrete,continuous, probabilistic forecasts and forecast expressed as parametric distributions.
Author: NCAR - Research Applications Laboratory
Maintainer: Eric Gilleland

Diff between verification versions 1.37 dated 2014-04-02 and 1.38 dated 2014-04-24

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Package strap updated to version 1.1 with previous version 1.0 dated 2014-03-31

Title: Stratigraphic Tree Analysis for Palaeontology
Description: Functions for the stratigraphic analysis of phylogenetic trees.
Author: Mark A. Bell Graeme T. Lloyd .
Maintainer: Mark A. Bell

Diff between strap versions 1.0 dated 2014-03-31 and 1.1 dated 2014-04-24

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Package robustbase updated to version 0.91-0 with previous version 0.90-2 dated 2014-02-04

Title: Basic Robust Statistics
Description: "Essential" Robust Statistics. The goal is to provide tools allowing to analyze data with robust methods. This includes regression methodology including model selections and multivariate statistics where we strive to cover the book "Robust Statistics, Theory and Methods" by Maronna, Martin and Yohai; Wiley 2006.
Author: Original code by many authors, notably Peter Rousseeuw and Christophe Croux, see file 'Copyrights'; Valentin Todorov , Andreas Ruckstuhl , Matias Salibian-Barrera , Tobias Verbeke , Manuel Koller , Martin Maechler
Maintainer: Martin Maechler

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Package mvMORPH updated to version 1.0.2 with previous version 1.0.1 dated 2014-02-07

Title: Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data
Description: Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees
Author: Julien Clavel, with contributions from Aaron King, and Emmanuel Paradis
Maintainer: Julien Clavel

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Package MIICD updated to version 1.1 with previous version 1.0 dated 2014-04-23

Title: Multiple Imputation for interval censored data regression
Description: Applies the Pan's (2000) multiple imputation approach to Cox or Fine and Gray regression for interval censored data.
Author: Marc Delord
Maintainer: Marc Delord

Diff between MIICD versions 1.0 dated 2014-04-23 and 1.1 dated 2014-04-24

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Package EvCombR updated to version 0.1-2 with previous version 0.1-1 dated 2014-01-23

Title: Evidence Combination in R
Description: Package for combining pieces of evidence
Author: Alexander Karlsson
Maintainer: Alexander Karlsson

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Package adehabitat updated to version 1.8.13 with previous version 1.8.12 dated 2013-01-11

Title: Analysis of habitat selection by animals
Description: A collection of tools for the analysis of habitat selection by animals
Author: Clement Calenge, contributions from Mathieu Basille, Stephane Dray and Scott Fortmann-Roe
Maintainer: Clement Calenge

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Package SPODT updated to version 0.9 with previous version 0.8.2 dated 2014-01-31

Title: Spatial Oblique Decision Tree
Description: SPODT is a spatial partitioning method based on oblique decision trees, in order to classify study area into zones of different risks, determining their boundaries
Author: Jean Gaudart, Nathalie Graffeo, Guillaume Barbet, Bernard Fichet, Roch Giorgi (Aix-Marseille University)
Maintainer: Jean Gaudart

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Package rpubchem updated to version 1.5.0.2 with previous version 1.5.0.1 dated 2014-03-11

Title: rpubchem - Interface to the PubChem Collection
Description: Access PubChem data (compounds, substance, assays). Structural information is provided in the form of SMILES strings. This package only provides access to a subset of the precalculated data stored by PubChem. Bio-assay data can be accessed to obtain descriptions as well as the actual data. It is also possible to search for assay ID's by keyword. Currently the main limitation is that only 1000 molecules can be downloaded at a time from the PubChem servers
Author: Rajarshi Guha
Maintainer: Rajarshi Guha

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Package chipPCR updated to version 0.0.6 with previous version 0.0.5 dated 2013-12-11

Title: Toolkit of helper functions to pre-process amplification data
Description: The chipPCR package is a toolkit of helper functions to pre-process amplification data. Amplification data can be obtained from classical PCR reactions or isothermal amplification reactions. The package contains functions to normalize amplification, a simple routine to detect the start of an amplification reaction and several smoothers for amplification data. The smoothers are based on LOWESS, moving average, cubic splines, Savitzky-Golay and others. In addition contains the chipPCR package data sets of experimental nucleic acid amplification systems including the VideoScan HCU and a capillary convective PCR system. The amplification data were generated by helicase dependent amplification (HDA) or polymerase chain reaction (PCR) under various temperature conditions. As detection system intercalating dyes (EvaGreen, SYBR Green) and hydrolysis probes (TaqMan) were used.
Author: Stefan Roediger, Michal Burdukiewicz
Maintainer: Stefan Roediger

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More information about chipPCR at CRAN
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Package FastRCS updated to version 0.0.3 with previous version 0.0.2 dated 2014-02-19

Title: R package to compute the FastRCS outlyingness index.
Description: The FastRCS outlyingness index is an algorithm for finding outliers for the linear regression model.
Author: Kaveh Vakili [aut, cre]
Maintainer: Kaveh Vakili

Diff between FastRCS versions 0.0.2 dated 2014-02-19 and 0.0.3 dated 2014-04-24

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New package binhf with initial version 1.0-1
Package: binhf
Title: Haar-Fisz functions for binomial data
Version: 1.0-1
Date: 24/04/2014
Author: Matt Nunes
Depends: R (>= 2.10), wavethresh, adlift (>= 0.9.2)
Description: Binomial Haar-Fisz transforms for Gaussianization
Maintainer: Matt Nunes
License: GPL (>= 2)
Packaged: 2014-04-24 10:07:36 UTC; nunes
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-24 13:19:59

More information about binhf at CRAN
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Package arm updated to version 1.7-02 with previous version 1.6-10 dated 2013-11-18

Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing lm, glm, svy.glm, merMod and polr outputs.
Author: Andrew Gelman [aut], Yu-Sung Su [aut, cre], Masanao Yajima [ctb], Jennifer Hill [ctb], Maria Grazia Pittau [ctb], Jouni Kerman [ctb], Tian Zheng [ctb], Vicent Dorie [ctb]
Maintainer: Yu-Sung Su

Diff between arm versions 1.6-10 dated 2013-11-18 and 1.7-02 dated 2014-04-24

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Package FastPCS updated to version 0.0.9 with previous version 0.0.8 dated 2014-02-15

Title: R package to compute the FastPCS outlyingness index.
Description: The FastPCS outlyingness index is an algorithm for finding outliers for the multivariate elliptical model.
Author: Kaveh Vakili [aut, cre]
Maintainer: Kaveh Vakili

Diff between FastPCS versions 0.0.8 dated 2014-02-15 and 0.0.9 dated 2014-04-24

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Package flip updated to version 2.4.2 with previous version 2.4.1 dated 2014-04-14

Title: Multivariate Permutation Tests
Description: It implements many univariate and multivariate permutation (and rotation) tests. Allowed tests: the t one and two samples, ANOVA, linear models, Chi Squared test, rank tests (i.e. Wilcoxon, Mann-Whitney, Kruskal-Wallis), Sign test and McNemar. Test on Linear Models are performed also in presence of covariates (i.e. nuisance parameters). The permutation and the rotation methods to get the null distribution of the test statistics are available. It also implements methods for multiplicity control such as Westfall-Young minP procedure and Closed Testing (Marcus, 1976) and k-FWER. Moreover, it allows to test for fixed effects in mixed effects models.
Author: Livio Finos, with contributions by Dario Basso, Aldo Solari, Jelle Goeman and Marco Rinaldo. Special thanks are due to Ivan Marin-Franch and Fredrik Nilsson for the debugging and the good questions.
Maintainer: Livio Finos

Diff between flip versions 2.4.1 dated 2014-04-14 and 2.4.2 dated 2014-04-24

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Package afex updated to version 0.9-109 with previous version 0.8-94 dated 2014-02-23

Title: Analysis of Factorial Experiments
Description: Provides convenience functions for analyzing factorial experiments using ANOVA or mixed-models. ez.glm() and aov.car() allow convenient calculation of between, within (i.e., repeated-measures), or mixed between-within (i.e., split-plot) ANOVAs for data in the long format (i.e., one observation per row) wrapping car::Anova() (aggregating more then one observation per individual and cell of the design), per default returning a print ready ANOVA table. Function mixed() fits a mixed model using lme4::lmer() and computes p-values for all effects in the model using either the Kenward-Roger approximation of degrees of freedom (LMM only), parametric bootstrap (LMMs and GLMMs) or likelihood ratio tests (LMMs and GLMMs). afex uses type 3 sums of squares as default (imitating commercial statistical software) and sets the default contrasts to contr.sum. Furthermore, compare.2.vectors() conveniently compares two vectors using a variety of tests.
Author: Henrik Singmann [aut, cre], Ben Bolker [ctb], Søren Højsgaard [ctb], Ulrich Halekoh [ctb], John Fox [ctb], Michael A. Lawrence [ctb]
Maintainer: Henrik Singmann

Diff between afex versions 0.8-94 dated 2014-02-23 and 0.9-109 dated 2014-04-24

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Package TFMPvalue updated to version 0.0.3 with previous version 0.0.2 dated 2014-03-31

Title: Efficient and accurate P-value computation for Position Weight Matrices.
Description: TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. This package is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15.
Author: Ge Tan
Maintainer: Ge Tan

Diff between TFMPvalue versions 0.0.2 dated 2014-03-31 and 0.0.3 dated 2014-04-24

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New package sand with initial version 1.0.2
Package: sand
Version: 1.0.2
Date: 2014-04-23
Title: Statistical Analysis of Network Data with R
Author: Eric D Kolaczyk, Gabor Csardi
Maintainer: Gabor Csardi
Depends: igraph, igraphdata
Suggests: GO.db, GOstats, ROCR, ape, car, eigenmodel, ergm, fdrtool, ggplot2, huge, kernlab, lattice, mixer, network, networkDynamic, networkTomography, ngspatial, org.Sc.sgd.db, sna, vioplot
Description: Data sets for the book 'Statistical Analysis of Network Data with R'.
License: GPL-3
URL: https://github.com/kolaczyk/sand
BugReports: https://github.com/kolaczyk/sand/issues
LazyData: true
Packaged: 2014-04-24 03:40:10 UTC; gaborcsardi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-24 08:16:55

More information about sand at CRAN
Permanent link

Package rggobi updated to version 2.1.20 with previous version 2.1.19 dated 2012-07-12

Title: Interface between R and GGobi
Description: The rggobi package provides a command-line interface to GGobi, an interactive and dynamic graphics package. Rggobi complements GGobi's graphical user interface, providing a way to fluidly transition between analysis and exploration, as well as automating common tasks.
Author: Duncan Temple Lang , Debby Swayne , Hadley Wickham , Michael Lawrence
Maintainer: Hadley Wickham

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Package Rgbp updated to version 1.0.6 with previous version 1.0.5 dated 2014-03-01

Title: Gaussian, Poisson, and Binomial Hierarchical Modeling
Description: Rgbp is an R package that utilizes approximate Bayesian machinery to provide a method of estimating two-level hierarchical models for Gaussian, Poisson, and Binomial data in a fast and computationally efficient manner. The main products of this package are point and interval estimates for the true parameters, whose good frequency properties can be validated via its repeated sampling procedure called frequency method checking. It is found that such Bayesian-frequentist reconciliation allows Rgbp to have attributes desirable both sides of the aisle, working well in small samples and yielding good coverage probabilities for its interval estimates.
Author: Joseph Kelly, Hyungsuk Tak, and Carl Morris
Maintainer: Joseph Kelly

Diff between Rgbp versions 1.0.5 dated 2014-03-01 and 1.0.6 dated 2014-04-24

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Package rgbif updated to version 0.6.2 with previous version 0.6.0 dated 2014-04-17

Title: Interface to the Global Biodiversity Information Facility API
Description: A programmatic interface to the Web Service methods provided by the Global Biodiversity Information Facility.
Author: Scott Chamberlain [aut, cre], Carl Boettiger [aut], Karthik Ram [aut], Vijay Barve [aut], Dan Mcglinn [aut]
Maintainer: Scott Chamberlain

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New package qdapTools with initial version 0.0.2
Package: qdapTools
Type: Package
Title: Tools for the qdap package.
Version: 0.0.2
Date: 2014-04-19
Authors@R: c(person("Bryan", "Goodrich", role = "ctb"), person("Dason", "Kurkiewicz", role = "ctb"), person("Kirill", "Mller", role = "ctb"), person("Tyler", "Rinker", email = "tyler.rinker@gmail.com", role = c("aut", "cre")))
Maintainer: Tyler Rinker
Depends: R (>= 3.0.0)
Imports: chron, RCurl
LazyData: TRUE
Description: This package is a collection of tools associated with the qdap package that may be useful outside of the context of text analysis.
License: GPL-2
URL: http://trinker.github.com/qdapTools/
BugReports: http://github.com/trinker/qdapTools/issues
Packaged: 2014-04-24 02:05:36 UTC; trinker
Author: Bryan Goodrich [ctb], Dason Kurkiewicz [ctb], Kirill Mller [ctb], Tyler Rinker [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-24 07:43:16

More information about qdapTools at CRAN
Permanent link

Package qdapDictionaries updated to version 0.0.4 with previous version 0.0.3 dated 2014-03-17

Title: Dictionaries and word lists for the qdap package.
Description: This package is a collection of dictionaries and word lists for use with the qdap package.
Author: Tyler Rinker
Maintainer: Tyler Rinker

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Package polywog updated to version 0.4-0 with previous version 0.3-0 dated 2013-01-09

Title: Bootstrapped Basis Regression with Oracle Model Selection
Description: Routines for flexible functional form estimation via basis regression, with model selection via the adaptive LASSO or SCAD to prevent overfitting.
Author: Brenton Kenkel and Curtis S. Signorino
Maintainer: Brenton Kenkel

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 polywog-0.4-0/polywog/R/margEff.polywog.r            |only
 polywog-0.4-0/polywog/R/model.frame.polywog.r        |only
 polywog-0.4-0/polywog/R/model.matrix.polywog.r       |only
 polywog-0.4-0/polywog/R/penaltyWeightsBinary.r       |only
 polywog-0.4-0/polywog/R/plot.margEff.polywog.r       |only
 polywog-0.4-0/polywog/R/plot.polywog.r               |only
 polywog-0.4-0/polywog/R/plot.preplot.polywog.r       |only
 polywog-0.4-0/polywog/R/polywog.r                    |  772 +++++--------------
 polywog-0.4-0/polywog/R/predVals.r                   |only
 polywog-0.4-0/polywog/R/predict.polywog.r            |only
 polywog-0.4-0/polywog/R/print.polywog.r              |only
 polywog-0.4-0/polywog/R/removeIntercepts.r           |only
 polywog-0.4-0/polywog/R/summary.polywog.r            |only
 polywog-0.4-0/polywog/R/vcov.polywog.r               |only
 polywog-0.4-0/polywog/README.md                      |only
 polywog-0.4-0/polywog/inst                           |only
 polywog-0.4-0/polywog/man/bootPolywog.Rd             |  122 +--
 polywog-0.4-0/polywog/man/cv.polywog.Rd              |  109 +-
 polywog-0.4-0/polywog/man/margEff.polywog.Rd         |   61 -
 polywog-0.4-0/polywog/man/model.frame.polywog.Rd     |only
 polywog-0.4-0/polywog/man/model.matrix.polywog.Rd    |only
 polywog-0.4-0/polywog/man/plot.margEff.polywog.Rd    |   12 
 polywog-0.4-0/polywog/man/plot.polywog.Rd            |   74 -
 polywog-0.4-0/polywog/man/polywog-package.Rd         |   22 
 polywog-0.4-0/polywog/man/polywog.Rd                 |  316 ++++---
 polywog-0.4-0/polywog/man/predVals.Rd                |  162 ++-
 polywog-0.4-0/polywog/man/predict.polywog.Rd         |   47 -
 polywog-0.4-0/polywog/man/summary.margEff.polywog.Rd |   13 
 polywog-0.4-0/polywog/man/summary.polywog.Rd         |   25 
 polywog-0.4-0/polywog/src                            |only
 58 files changed, 813 insertions(+), 1048 deletions(-)

More information about polywog at CRAN
Permanent link

New package MILC with initial version 1.0
Package: MILC
Type: Package
Title: MIcrosimulation Lung Cancer (MILC) model
Version: 1.0
Date: 2014-02-18
Author: Stavroula A. Chrysanthopoulou
Maintainer: Stavroula A. Chrysanthopoulou
Description: The MILC package is designed to predict individual trajectories using the continuous time microsimulation model MILC, that describes the natural history of lung cancer.
License: GPL (>= 2)
Packaged: 2014-04-23 20:29:21 UTC; schrysan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-24 07:43:03

More information about MILC at CRAN
Permanent link

New package clusterfly with initial version 0.4
Package: clusterfly
Type: Package
Title: Explore clustering interactively using R and GGobi
Version: 0.4
Author: Hadley Wickham
Maintainer: Hadley Wickham
Description: Visualise clustering algorithms with GGobi. Contains both general code for visualising clustering results and specific visualisations for model-based, hierarchical and SOM clustering.
URL: http://had.co.nz/clusterfly
Depends: rggobi
Imports: e1071, reshape2, plyr, RGtk2
Suggests: som, mclust, kohonen, ggplot2
License: MIT + file LICENSE
LazyData: true
Roxygen: list(wrap = FALSE)
Packaged: 2014-04-23 19:39:40 UTC; hadley
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-24 07:43:09

More information about clusterfly at CRAN
Permanent link

Wed, 23 Apr 2014

Package tourr updated to version 0.5.3 with previous version 0.5.2 dated 2012-06-19

Title: Implement tour methods in pure R code
Description: Implements geodesic interpolation and basis generation functions that allow you to create new tour methods from R.
Author: Dianne Cook , Hadley Wickham
Maintainer: Hadley Wickham

Diff between tourr versions 0.5.2 dated 2012-06-19 and 0.5.3 dated 2014-04-23

 tourr-0.5.2/tourr/R/display-ggobi.r                |only
 tourr-0.5.2/tourr/man/data-flea.Rd                 |only
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 tourr-0.5.2/tourr/man/data-ratcns.Rd               |only
 tourr-0.5.2/tourr/man/data-tao.Rd                  |only
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 tourr-0.5.2/tourr/observe-bases.r                  |only
 tourr-0.5.2/tourr/path-ggobi.r                     |only
 tourr-0.5.2/tourr/util                             |only
 tourr-0.5.3/tourr/DESCRIPTION                      |   32 +--
 tourr-0.5.3/tourr/LICENSE                          |only
 tourr-0.5.3/tourr/MD5                              |  190 ++++++++++-----------
 tourr-0.5.3/tourr/NAMESPACE                        |   30 +--
 tourr-0.5.3/tourr/NEWS                             |   12 +
 tourr-0.5.3/tourr/R/animate.r                      |   40 ++--
 tourr-0.5.3/tourr/R/data.r                         |only
 tourr-0.5.3/tourr/R/display-pcp.r                  |   28 +--
 tourr-0.5.3/tourr/R/display-trails.r               |   24 +-
 tourr-0.5.3/tourr/R/display-xy.r                   |   53 ++++-
 tourr-0.5.3/tourr/R/geodesic-path.r                |   22 +-
 tourr-0.5.3/tourr/R/history.r                      |   36 +--
 tourr-0.5.3/tourr/R/path-andrews.r                 |   35 +--
 tourr-0.5.3/tourr/R/path-dist.r                    |   22 --
 tourr-0.5.3/tourr/R/path-index.r                   |   31 +--
 tourr-0.5.3/tourr/R/range.r                        |   16 -
 tourr-0.5.3/tourr/R/render.r                       |   10 -
 tourr-0.5.3/tourr/R/util.r                         |   28 +--
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 tourr-0.5.3/tourr/man/anaglyph.Rd                  |   11 -
 tourr-0.5.3/tourr/man/andrews.Rd                   |   14 -
 tourr-0.5.3/tourr/man/animate.Rd                   |   61 +++---
 tourr-0.5.3/tourr/man/bases_little.Rd              |    9 
 tourr-0.5.3/tourr/man/basis_init.Rd                |    9 
 tourr-0.5.3/tourr/man/basis_nearby.Rd              |    5 
 tourr-0.5.3/tourr/man/basis_random.Rd              |    9 
 tourr-0.5.3/tourr/man/blank_plot.Rd                |    5 
 tourr-0.5.3/tourr/man/center.Rd                    |    7 
 tourr-0.5.3/tourr/man/check_freezer_safe.Rd        |    7 
 tourr-0.5.3/tourr/man/cmass.Rd                     |   10 -
 tourr-0.5.3/tourr/man/dependence_tour.Rd           |   26 +-
 tourr-0.5.3/tourr/man/display_andrews.Rd           |   21 --
 tourr-0.5.3/tourr/man/display_depth.Rd             |   33 +--
 tourr-0.5.3/tourr/man/display_dist.Rd              |   38 +---
 tourr-0.5.3/tourr/man/display_faces.Rd             |   26 +-
 tourr-0.5.3/tourr/man/display_image.Rd             |   32 +--
 tourr-0.5.3/tourr/man/display_pcp.Rd               |   23 +-
 tourr-0.5.3/tourr/man/display_scatmat.Rd           |   23 +-
 tourr-0.5.3/tourr/man/display_stars.Rd             |   24 +-
 tourr-0.5.3/tourr/man/display_stereo.Rd            |   26 +-
 tourr-0.5.3/tourr/man/display_trails.Rd            |   43 ++--
 tourr-0.5.3/tourr/man/display_xy.Rd                |   57 +++---
 tourr-0.5.3/tourr/man/draw_tour_axes.Rd            |    5 
 tourr-0.5.3/tourr/man/find_best_dir.Rd             |   18 -
 tourr-0.5.3/tourr/man/find_best_frozen_dir.Rd      |    6 
 tourr-0.5.3/tourr/man/find_frozen_path_peak.Rd     |    6 
 tourr-0.5.3/tourr/man/find_path_peak.Rd            |   21 +-
 tourr-0.5.3/tourr/man/find_platform.Rd             |    7 
 tourr-0.5.3/tourr/man/freeze.Rd                    |   16 -
 tourr-0.5.3/tourr/man/frozen_guided_tour.Rd        |   25 +-
 tourr-0.5.3/tourr/man/frozen_tour.Rd               |   26 +-
 tourr-0.5.3/tourr/man/geodesic_info.Rd             |   38 ++--
 tourr-0.5.3/tourr/man/geodesic_path.Rd             |   40 ++--
 tourr-0.5.3/tourr/man/grand_tour.Rd                |   16 -
 tourr-0.5.3/tourr/man/guided_tour.Rd               |   54 ++---
 tourr-0.5.3/tourr/man/holes.Rd                     |   10 -
 tourr-0.5.3/tourr/man/interpolate.Rd               |   11 -
 tourr-0.5.3/tourr/man/is_orthonormal.Rd            |   10 -
 tourr-0.5.3/tourr/man/lda_pp.Rd                    |   10 -
 tourr-0.5.3/tourr/man/little_tour.Rd               |   17 -
 tourr-0.5.3/tourr/man/local_tour.Rd                |   18 -
 tourr-0.5.3/tourr/man/new_geodesic_path.Rd         |   35 +--
 tourr-0.5.3/tourr/man/new_tour.Rd                  |   39 +---
 tourr-0.5.3/tourr/man/normalise.Rd                 |    7 
 tourr-0.5.3/tourr/man/orthonormalise.Rd            |    7 
 tourr-0.5.3/tourr/man/orthonormalise_by.Rd         |   11 -
 tourr-0.5.3/tourr/man/path_curves.Rd               |   14 -
 tourr-0.5.3/tourr/man/path_dist.Rd                 |   15 -
 tourr-0.5.3/tourr/man/path_index.Rd                |   16 -
 tourr-0.5.3/tourr/man/paths_index.Rd               |   13 -
 tourr-0.5.3/tourr/man/pda_pp.Rd                    |   13 -
 tourr-0.5.3/tourr/man/planned_tour.Rd              |   29 +--
 tourr-0.5.3/tourr/man/plot.path_curve.Rd           |   16 -
 tourr-0.5.3/tourr/man/plot.path_index.Rd           |    5 
 tourr-0.5.3/tourr/man/proj_dist.Rd                 |   13 -
 tourr-0.5.3/tourr/man/project3d.Rd                 |   14 -
 tourr-0.5.3/tourr/man/render.Rd                    |   44 ++--
 tourr-0.5.3/tourr/man/rescale.Rd                   |    7 
 tourr-0.5.3/tourr/man/save_history.Rd              |   40 +---
 tourr-0.5.3/tourr/man/search_better.Rd             |    8 
 tourr-0.5.3/tourr/man/search_better_random.Rd      |    7 
 tourr-0.5.3/tourr/man/search_frozen_geodesic.Rd    |   17 -
 tourr-0.5.3/tourr/man/search_geodesic.Rd           |   36 +--
 tourr-0.5.3/tourr/man/sphere.Rd                    |   10 -
 tourr-0.5.3/tourr/man/step_angle.Rd                |    9 
 tourr-0.5.3/tourr/man/step_fraction.Rd             |   11 -
 tourr-0.5.3/tourr/man/to_stop.Rd                   |    6 
 tourr-0.5.3/tourr/man/xnul.Rd                      |    9 
 107 files changed, 936 insertions(+), 997 deletions(-)

More information about tourr at CRAN
Permanent link

New package sglasso with initial version 1.0-0
Package: sglasso
Type: Package
Title: Lasso method for RCON(V,E) models
Version: 1.0-0
Date: 2014-04-23
Author: Luigi Augugliaro
Maintainer: Luigi Augugliaro
Depends: Matrix
Description: RCON(V, E) models (Hojsgaard, et al., 2008) are a kind of restriction of the Gaussian Graphical Models defined by a set of equality constraints on the entries of the concentration matrix. sglasso package implements the structured graphical lasso (sglasso) estimator proposed in Augugliaro et al. (2014) for the weighted l1-penalized RCON(V, E) model. Two cyclic coordinate algorithms are implemented to compute the sglasso estimator, i.e. a cyclic coordinate minimization (CCM) algorithm and a cyclic coordinate descent (CCD) algorithm.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-04-23 16:42:00 UTC; francesca
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-23 19:51:24

More information about sglasso at CRAN
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Package rivervis updated to version 0.38.3 with previous version 0.38.2 dated 2014-04-03

Title: River Visualisation Tool
Description: Visualisation for quantitative and qualitative riverine data
Author: Feng Mao , Yichuan Shi , and Keith Richards
Maintainer: Feng Mao

Diff between rivervis versions 0.38.2 dated 2014-04-03 and 0.38.3 dated 2014-04-23

 DESCRIPTION             |    6 +++---
 MD5                     |    6 +++---
 R/rivervis.R            |   20 ++++++++++++--------
 man/rivervis-package.Rd |    8 ++++----
 4 files changed, 22 insertions(+), 18 deletions(-)

More information about rivervis at CRAN
Permanent link

New package REdaS with initial version 0.9.0
Package: REdaS
Type: Package
Title: Companion Package to the Book “R: Einführung durch angewandte Statistik”
Version: 0.9.0
Date: 2014-04-23
Authors@R: person(given=c("Marco", "Johannes"), family="Maier", email="marco.maier@wu.ac.at", role=c("cre","aut"))
Description: This package provides functions used in the second edition of “R: Einführung durch angewandte Statistik”.
Depends: R (>= 3.0.0), grid
Suggests: car, GPArotation, mclust, psych, UsingR, vcd
License: GPL-2
Encoding: UTF-8
Packaged: 2014-04-23 16:14:58 UTC; hornik
Author: Marco Johannes Maier [cre, aut]
Maintainer: Marco Johannes Maier
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-23 18:16:38

More information about REdaS at CRAN
Permanent link

Package mirt updated to version 1.3 with previous version 1.2.1 dated 2014-02-21

Title: Multidimensional Item Response Theory
Description: Analysis of dichotomous and polytomous response data using unidimensional and multidimensional latent trait models under the Item Response Theory paradigm. Exploratory and confirmatory models can be estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory bi-factor and two-tier analyses are available for modeling item testlets. Multiple group analysis and mixed effects designs also are available for detecting differential item functioning and modelling item and person covariates.
Author: Phil Chalmers [aut, cre, cph], Joshua Pritikin [ctb], Mateusz Zoltak [ctb]
Maintainer: Phil Chalmers

Diff between mirt versions 1.2.1 dated 2014-02-21 and 1.3 dated 2014-04-23

 mirt-1.2.1/mirt/inst/tests                    |only
 mirt-1.3/mirt/DESCRIPTION                     |   39 --
 mirt-1.3/mirt/MD5                             |  221 ++++++-------
 mirt-1.3/mirt/NAMESPACE                       |    3 
 mirt-1.3/mirt/NEWS                            |   71 ++++
 mirt-1.3/mirt/R/00-classes.R                  |   16 
 mirt-1.3/mirt/R/02-item_methods.R             |    6 
 mirt-1.3/mirt/R/03-estimation.R               |  136 +++++---
 mirt-1.3/mirt/R/04-derivatives.R              |   24 -
 mirt-1.3/mirt/R/Confirmatory-methods.R        |   63 +++
 mirt-1.3/mirt/R/DIF.R                         |    9 
 mirt-1.3/mirt/R/DTF.R                         |only
 mirt-1.3/mirt/R/EMstep.group.R                |  168 +++++++--
 mirt-1.3/mirt/R/Exploratory-methods.R         |   76 ++--
 mirt-1.3/mirt/R/M2.R                          |    2 
 mirt-1.3/mirt/R/MHRM.group.R                  |   53 +--
 mirt-1.3/mirt/R/MultipleGroup-methods.R       |    4 
 mirt-1.3/mirt/R/PLCI.mirt.R                   |    2 
 mirt-1.3/mirt/R/PrepData.R                    |    2 
 mirt-1.3/mirt/R/SE.methods.R                  |   30 +
 mirt-1.3/mirt/R/bfactor.R                     |    4 
 mirt-1.3/mirt/R/calcLogLik.R                  |   11 
 mirt-1.3/mirt/R/createItem.R                  |   20 -
 mirt-1.3/mirt/R/expand.table.R                |    4 
 mirt-1.3/mirt/R/expected.item.R               |    8 
 mirt-1.3/mirt/R/expected.test.R               |only
 mirt-1.3/mirt/R/extract.item.R                |    6 
 mirt-1.3/mirt/R/fscores.R                     |   69 ++--
 mirt-1.3/mirt/R/fscores.internal.R            |  263 +++++++++++----
 mirt-1.3/mirt/R/imputeMissing.R               |   10 
 mirt-1.3/mirt/R/itemfit.R                     |    2 
 mirt-1.3/mirt/R/iteminfo.R                    |    4 
 mirt-1.3/mirt/R/itemplot.R                    |    7 
 mirt-1.3/mirt/R/itemplot.internal.R           |   10 
 mirt-1.3/mirt/R/key2binary.R                  |   66 +--
 mirt-1.3/mirt/R/mirt-package.R                |    4 
 mirt-1.3/mirt/R/mirt.R                        |   81 ++--
 mirt-1.3/mirt/R/mirt.model.R                  |   48 +-
 mirt-1.3/mirt/R/mirtCluster.R                 |    5 
 mirt-1.3/mirt/R/mixedmirt.R                   |    2 
 mirt-1.3/mirt/R/model.elements.R              |   19 -
 mirt-1.3/mirt/R/multipleGroup.R               |   18 -
 mirt-1.3/mirt/R/personfit.R                   |   40 ++
 mirt-1.3/mirt/R/shinyItemplot.R               |only
 mirt-1.3/mirt/R/simdata.R                     |   52 +--
 mirt-1.3/mirt/R/testinfo.R                    |    4 
 mirt-1.3/mirt/R/utils.R                       |  437 +++++++++-----------------
 mirt-1.3/mirt/R/wald.R                        |   72 +---
 mirt-1.3/mirt/data/LSAT6.RData                |binary
 mirt-1.3/mirt/man/Bock1997.Rd                 |   13 
 mirt-1.3/mirt/man/ConfirmatoryClass-class.Rd  |   15 
 mirt-1.3/mirt/man/DIF.Rd                      |   28 -
 mirt-1.3/mirt/man/ExploratoryClass-class.Rd   |   13 
 mirt-1.3/mirt/man/LSAT6.Rd                    |   15 
 mirt-1.3/mirt/man/LSAT7.Rd                    |   15 
 mirt-1.3/mirt/man/M2.Rd                       |   16 
 mirt-1.3/mirt/man/MixedClass-class.Rd         |   11 
 mirt-1.3/mirt/man/MultipleGroupClass-class.Rd |   13 
 mirt-1.3/mirt/man/PLCI.mirt.Rd                |   20 -
 mirt-1.3/mirt/man/SAT12.Rd                    |   32 -
 mirt-1.3/mirt/man/Science.Rd                  |    9 
 mirt-1.3/mirt/man/anova-method.Rd             |    6 
 mirt-1.3/mirt/man/bfactor.Rd                  |  122 +++----
 mirt-1.3/mirt/man/boot.mirt.Rd                |   12 
 mirt-1.3/mirt/man/calcLogLik-method.Rd        |   32 +
 mirt-1.3/mirt/man/coef-method.Rd              |   12 
 mirt-1.3/mirt/man/createItem.Rd               |   33 -
 mirt-1.3/mirt/man/deAyala.Rd                  |   11 
 mirt-1.3/mirt/man/expand.table.Rd             |   14 
 mirt-1.3/mirt/man/expected.item.Rd            |   13 
 mirt-1.3/mirt/man/expected.test.Rd            |only
 mirt-1.3/mirt/man/extract.item.Rd             |    5 
 mirt-1.3/mirt/man/fscores.Rd                  |   96 +++--
 mirt-1.3/mirt/man/imputeMissing.Rd            |   12 
 mirt-1.3/mirt/man/itemfit.Rd                  |   59 +--
 mirt-1.3/mirt/man/iteminfo.Rd                 |   10 
 mirt-1.3/mirt/man/itemplot.Rd                 |   21 -
 mirt-1.3/mirt/man/key2binary.Rd               |   13 
 mirt-1.3/mirt/man/mirt-package.Rd             |   38 +-
 mirt-1.3/mirt/man/mirt.Rd                     |  318 +++++++++---------
 mirt-1.3/mirt/man/mirt.model.Rd               |  120 +++----
 mirt-1.3/mirt/man/mirtCluster.Rd              |   21 -
 mirt-1.3/mirt/man/mixedmirt.Rd                |   88 ++---
 mirt-1.3/mirt/man/mod2values.Rd               |   14 
 mirt-1.3/mirt/man/multipleGroup.Rd            |   98 ++---
 mirt-1.3/mirt/man/personfit.Rd                |   59 ++-
 mirt-1.3/mirt/man/plot-method.Rd              |   19 -
 mirt-1.3/mirt/man/print-method.Rd             |    8 
 mirt-1.3/mirt/man/probtrace.Rd                |   10 
 mirt-1.3/mirt/man/randef.Rd                   |   11 
 mirt-1.3/mirt/man/read.mirt.Rd                |    8 
 mirt-1.3/mirt/man/residuals-method.Rd         |   27 -
 mirt-1.3/mirt/man/show-method.Rd              |    8 
 mirt-1.3/mirt/man/simdata.Rd                  |   24 -
 mirt-1.3/mirt/man/summary-method.Rd           |   24 -
 mirt-1.3/mirt/man/testinfo.Rd                 |    6 
 mirt-1.3/mirt/man/wald.Rd                     |   35 --
 mirt-1.3/mirt/src/Estep.cpp                   |   32 +
 mirt-1.3/mirt/src/Estep.h                     |    6 
 mirt-1.3/mirt/src/Misc.cpp                    |    2 
 mirt-1.3/mirt/src/dpars.cpp                   |    4 
 mirt-1.3/mirt/src/traceLinePts.cpp            |   60 ++-
 mirt-1.3/mirt/tests                           |only
 103 files changed, 2179 insertions(+), 1723 deletions(-)

More information about mirt at CRAN
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Package classifly updated to version 0.4 with previous version 0.3 dated 2011-01-29

Title: Explore classification models in high dimensions
Description: Given $p$-dimensional training data containing $d$ groups (the design space), a classification algorithm (classifier) predicts which group new data belongs to. Generally the input to these algorithms is high dimensional, and the boundaries between groups will be high dimensional and perhaps curvilinear or multi-faceted. This package implements methods for understanding the division of space between the groups.
Author: Hadley Wickham
Maintainer: Hadley Wickham

Diff between classifly versions 0.3 dated 2011-01-29 and 0.4 dated 2014-04-23

 classifly-0.3/classifly/load.r                              |only
 classifly-0.3/classifly/man/olives.rd                       |only
 classifly-0.4/classifly/DESCRIPTION                         |   31 +--
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 24 files changed, 394 insertions(+), 337 deletions(-)

More information about classifly at CRAN
Permanent link

Package BayesLogit updated to version 0.3 with previous version 0.2-4 dated 2013-05-22

Title: Logistic Regression
Description: The BayesLogit package does posterior simulation for binomial and multinomial logistic regression using the Polya-Gamma latent variable technique. This method is fully automatic, exact, and fast. A routine to efficiently sample from the Polya-Gamma class of distributions is included.
Author: Nicholas G. Polson, James G. Scott, and Jesse Windle
Maintainer: Jesse Windle

Diff between BayesLogit versions 0.2-4 dated 2013-05-22 and 0.3 dated 2014-04-23

 DESCRIPTION            |   17 -
 MD5                    |   51 +--
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 src/Makevars           |    3 
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 28 files changed, 1091 insertions(+), 1022 deletions(-)

More information about BayesLogit at CRAN
Permanent link

Package BayesBridge updated to version 0.4 with previous version 0.2-1 dated 2013-05-08

Title: Bridge Regression
Description: This package implements Bayesian bridge regression.
Author: Nicholas G. Polson, James G. Scott, and Jesse Windle
Maintainer: Jesse Windle

Diff between BayesBridge versions 0.2-1 dated 2013-05-08 and 0.4 dated 2014-04-23

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 BayesBridge-0.4/BayesBridge/inst/CITATION            |   14 
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 BayesBridge-0.4/BayesBridge/src/BridgeRegression.cpp |    3 
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 BayesBridge-0.4/BayesBridge/src/MatrixFrame.cpp      |    4 
 BayesBridge-0.4/BayesBridge/src/MatrixFrame.h        |   77 ++-
 BayesBridge-0.4/BayesBridge/src/RNG.cpp              |  468 ++++++++++---------
 BayesBridge-0.4/BayesBridge/src/RNG.h                |   49 +
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 18 files changed, 862 insertions(+), 463 deletions(-)

More information about BayesBridge at CRAN
Permanent link

Package dsm updated to version 2.2.3 with previous version 2.1.3 dated 2013-08-20

Title: Density surface modelling of distance sampling data
Description: This library implements density surface modelling of line transect data, based on the methods of Hedley et al. (2004). Some recent developments in the literature have also be incorporated. Outputs are point and interval estimates of population abundance and density. Please note that this version of dsm WILL NOT work with the Windows package DISTANCE earlier than version 6.2. For a version that works with DISTANCE 6.1, please go to: https://github.com/DistanceDevelopment/dsm-distance-6.1 For the latest version of dsm, please use the github version at the URL listed below. Miller, D. L., M. L. Burt, E. Rexstad and L. Thomas. 2013. Spatial models for distance sampling data: recent developments and future directions. Methods in Ecology and Evolution Hedley, S.L., S.T. Buckland and D.L. Borchers. 2004. "Spatial distance sampling methods" pp 48-70 in Advanced Distance Sampling, Buckland, S.T. et al. (eds). Oxford University Press.
Author: David L. Miller, Eric Rexstad, Louise Burt, Mark V. Bravington, Sharon Hedley.
Maintainer: David Lawrence Miller

Diff between dsm versions 2.1.3 dated 2013-08-20 and 2.2.3 dated 2014-04-23

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 dsm-2.2.3/dsm/R/dsm.var.movblk.R             |  122 ++++++++++++----------
 dsm-2.2.3/dsm/R/generate.mb.sample.R         |   25 ++--
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More information about dsm at CRAN
Permanent link

Package BBmisc updated to version 1.6 with previous version 1.5 dated 2014-01-24

Title: Miscellaneous helper functions for B. Bischl.
Description: Miscellaneous helper functions for and from B. Bischl and some other guys at TU Dortmund, mainly for package development.
Author: Bernd Bischl , Michel Lang , Olaf Mersmann
Maintainer: Bernd Bischl

Diff between BBmisc versions 1.5 dated 2014-01-24 and 1.6 dated 2014-04-23

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More information about BBmisc at CRAN
Permanent link

Package tableone updated to version 0.5.0 with previous version 0.4.0 dated 2014-03-30

Title: Create "Table 1" to describe baseline characteristics
Description: This package creates "Table 1", i.e., description of baseline patient characteristics, which is essential in every medical research. This package provides functions to create such summaries for continuous and categorical variables, optionally with subgroup comparisons. The package was inspired by and based on descriptive statistics functions in Deducer, a Java-based GUI package by Ian Fellows. This package does not require GUI or Java, and intended for command-line users.
Author: Kazuki Yoshida, Justin Bohn.
Maintainer: Kazuki Yoshida

Diff between tableone versions 0.4.0 dated 2014-03-30 and 0.5.0 dated 2014-04-23

 DESCRIPTION             |    8 ++++----
 MD5                     |   34 +++++++++++++++++-----------------
 NEWS                    |   10 ++++++++++
 R/CreateCatTable.R      |    3 +++
 R/CreateContTable.R     |    3 +++
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 18 files changed, 141 insertions(+), 28 deletions(-)

More information about tableone at CRAN
Permanent link

Package reshape2 updated to version 1.4 with previous version 1.2.2 dated 2012-12-04

Title: Flexibly reshape data: a reboot of the reshape package.
Description: Reshape lets you flexibly restructure and aggregate data using just two functions: melt and cast.
Author: Hadley Wickham
Maintainer: Hadley Wickham

Diff between reshape2 versions 1.2.2 dated 2012-12-04 and 1.4 dated 2014-04-23

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More information about reshape2 at CRAN
Permanent link

New package phenability with initial version 1.0
Package: phenability
Type: Package
Title: Nonparametric Stability Analysis
Version: 1.0
Date: 2014-04-22
Author: Leonardo Castelo Branco
Maintainer: Leonardo C. Branco
Description: This package is an alternative to carrying out phenotypic adaptability and stability analyses, taking into account nonparametric statistics, and can be used as a robust approach, and less sensitive to departures from common genotypic, environmental, and GxE effects data assumptions (e.g., normal distribution of errors).
Depends: calibrate, R (>= 2.12.0)
License: GPL-3
NeedsCompilation: no
Repository: CRAN
Packaged: 2014-04-23 12:55:38 UTC; root
Date/Publication: 2014-04-23 16:27:27

More information about phenability at CRAN
Permanent link

New package MIICD with initial version 1.0
Package: MIICD
Type: Package
Title: Multiple Imputation for interval censored data regression
Version: 1.0
Date: 2014-02-13
Author: Marc Delord
Maintainer: Marc Delord
Description: Applies the Pan's (2000) multiple imputation approach to Cox or Fine and Gray regression for interval censored data.
License: GPL-3
Depends: mstate , prodlim, cmprsk, riskRegression
Imports: MASS , survival
Packaged: 2014-04-23 13:08:50 UTC; marc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-23 15:18:30

More information about MIICD at CRAN
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Package phtt updated to version 3.1.1 with previous version 3.1 dated 2013-10-09

Title: Panel Data Analysis with Heterogeneous Time Trends
Description: The R-package 'phtt' provides estimation procedures for panel data with large dimensions n, T, and general forms of unobservable heterogeneous effects. Particularly, the estimation procedures are those of Bai (2009) and Kneip, Sickles, and Song (2012), which complement one another very well: both models assume the unobservable heterogeneous effects to have a factor structure. The method of Bai (2009) assumes that the factors are stationary, whereas the method of Kneip et al. (2012) allows the factors to be non-stationary. Additionally, the 'phtt' package provides a wide range of dimensionality criteria in order to estimate the number of the unobserved factors simultaneously with the remaining model parameters.
Author: Oualid Bada, Dominik Liebl
Maintainer: Dominik Liebl

Diff between phtt versions 3.1 dated 2013-10-09 and 3.1.1 dated 2014-04-23

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Package ReporteRs updated to version 0.5.2 with previous version 0.3 dated 2014-03-03

Title: Microsoft Word, Microsoft Powerpoint and HTML documents generation from R
Description: An R package for creating Microsoft Word document (>=2007), Microsoft Powerpoint document (>=2007) and HTML documents from R. There are several features to let you format and present R outputs ; e.g. Editable Vector Graphics, functions for complex tables reporting, reuse of corporate template document (*.docx and *.pptx). You can use the package as a tool for fast reporting and as a tool for reporting automation. The package does not require any installation of Microsoft product to be able to write Microsoft files (docx and pptx).
Author: David Gohel
Maintainer: David Gohel

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 ReporteRs-0.5.2/ReporteRs/NEWS                                                             |   57 
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 ReporteRs-0.5.2/ReporteRs/R/docx.R                                                         |    4 
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 ReporteRs-0.5.2/ReporteRs/R/pot.R                                                          |   10 
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 ReporteRs-0.5.2/ReporteRs/R/print.docx.R                                                   |    4 
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Package planor updated to version 0.1-12 with previous version 0.1-10 dated 2013-09-20

Title: Generation of regular factorial designs
Description: planor is a package dedicated to the automatic generation of regular factorial designs, including fractional designs, orthogonal block designs, row-column designs and split-plots.
Author: Hervé Monod, Annie Bouvier, André Kobilinsky
Maintainer: Annie Bouvier

Diff between planor versions 0.1-10 dated 2013-09-20 and 0.1-12 dated 2014-04-23

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Package micEconCES updated to version 0.9-8 with previous version 0.9-6 dated 2012-01-03

Title: Analysis with the Constant Elasticity of Substitution (CES) function
Description: Tools for economic analysis and economic modelling with a Constant Elasticity of Substitution (CES) function
Author: Arne Henningsen and Geraldine Henningsen
Maintainer: Arne Henningsen

Diff between micEconCES versions 0.9-6 dated 2012-01-03 and 0.9-8 dated 2014-04-23

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Package IsingFit updated to version 0.2.0 with previous version 0.1.2 dated 2014-02-17

Title: Fitting Ising models using the eLasso method
Description: This network estimation procedure eLasso, which is based on the Ising model, combines l1-regularized logistic regression with model selection based on the Extended Bayesian Information Criterion (EBIC). EBIC is a fit measure that identifies relevant relationships between variables. The resulting network consists of variables as nodes and relevant relationships as edges. Can deal with binary data.
Author: Claudia van Borkulo, Sacha Epskamp, with contributions from Alexander Robitzsch
Maintainer: Claudia van Borkulo

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Package eHOF updated to version 1.4 with previous version 1.3 dated 2013-12-14

Title: Extended and enhanced Hierarchical Logistic Regression models (so called Huisman-Olff-Fresco models).
Description: Hierarchical logistic species response curves along one-dimensional gradients including no response, monotone, plateau, unimodal and bimodal models.
Author: Florian Jansen, Jari Oksanen
Maintainer: Florian Jansen

Diff between eHOF versions 1.3 dated 2013-12-14 and 1.4 dated 2014-04-23

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Package CopulaRegression updated to version 0.1-4 with previous version 0.1-3 dated 2013-03-13

Title: Bivariate Copula Based Regression Models
Description: This R-packages presents a bivariate, copula-based model for the joint distribution of a pair of continuous and discrete random variables. The two marginal random variables are modeled via generalized linear models, and their joint distribution (represented by a parametric copula family) is estimated using maximum-likelihood techniques.
Author: Nicole Kraemer, Daniel Silvestrini
Maintainer: Nicole Kraemer

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Package SNPassoc updated to version 1.9-2 with previous version 1.9-1 dated 2013-11-08

Title: SNPs-based whole genome association studies
Description: This package carries out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated.
Author: Juan R González, Lluís Armengol, Elisabet Guinó, Xavier Solé, and Víctor Moreno
Maintainer: Juan R González

Diff between SNPassoc versions 1.9-1 dated 2013-11-08 and 1.9-2 dated 2014-04-23

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Package packHV updated to version 1.8 with previous version 1.7 dated 2013-07-03

Title: A few useful functions for statisticians
Description: Various useful functions for statisticians: describe data, plot Kaplan-Meier curves with numbers of subjects at risk, compare data sets, display spaghetti-plot, build multi-contingency tables...
Author: Hugo Varet
Maintainer: Hugo Varet

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Package MicSim updated to version 1.0.3 with previous version 1.0.2 dated 2014-03-12

Title: Performing continuous-time microsimulation
Description: The package performs continuous-time microsimulation for population projections.
Author: Sabine Zinn
Maintainer: Sabine Zinn

Diff between MicSim versions 1.0.2 dated 2014-03-12 and 1.0.3 dated 2014-04-23

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More information about MicSim at CRAN
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Package CDM updated to version 3.2-6 with previous version 3.1-14 dated 2014-03-21

Title: Cognitive Diagnosis Modeling
Description: Functions for cognitive diagnosis modeling and multidimensional item response modeling for dichotomous and polytomous data. This package enables the estimation of the DINA and DINO model, the multiple group (polytomous) GDINA model, the multiple choice DINA model and the general diagnostic model (GDM) which contains the multidimensional linear compensatory item response model as a special case.
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch

Diff between CDM versions 3.1-14 dated 2014-03-21 and 3.2-6 dated 2014-04-23

 DESCRIPTION         |    8 ++++----
 MD5                 |   22 +++++++++++-----------
 R/gdina.R           |   52 +++++++++++++++++-----------------------------------
 R/gdina.dif.R       |   18 +++++++++++++++---
 R/gdina.dif_aux.R   |   18 +++++++++++++-----
 R/itemfit.sx2.R     |    4 +++-
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 inst/NEWS           |   22 +++++++++++++++++++---
 man/CDM-package.Rd  |   20 ++++++++++----------
 man/gdina.Rd        |    9 +++++++--
 man/gdina.dif.Rd    |   41 ++++++++++++++++++++++++++++++-----------
 man/itemfit.sx2.Rd  |   45 +++++++++++++++++++++++++--------------------
 12 files changed, 162 insertions(+), 108 deletions(-)

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New package NormalLaplace with initial version 0.2-0
Package: NormalLaplace
Version: 0.2-0
Date: 2011-01-10
Title: The Normal Laplace Distribution
Author: David Scott , Jason Shicong Fu and Simon Potter
Maintainer: David Scott
Depends: R (>= 2.3.0), DistributionUtils, GeneralizedHyperbolic
Suggests: RUnit
Encoding: latin1
Description: This package provides functions for the normal Laplace distribution. It is currently under development and provides only limited functionality. Density, distribution and quantile functions, random number generation, and moments are provided.
License: GPL (>= 2)
Repository: CRAN
Repository/R-Forge/Project: rmetrics
Repository/R-Forge/Revision: 4777
Date/Publication: 2014-04-23 06:54:00
Packaged: 2014-04-23 00:55:50 UTC; dsco036
NeedsCompilation: no

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New package GPLTR with initial version 0.85
Package: GPLTR
Type: Package
Title: Generalized Partially Linear Tree-based Regression Model
Version: 0.85
Date: 2014-04-22
Author: Cyprien Mbogning and Wilson Toussile
Maintainer: Cyprien Mbogning
Description: Package for generalized partially linear tree-based regression model, combining a generalized linear model with an additional tree part on the same scale.
License: GPL (>= 2.0)
LazyLoad: yes
Depends: rpart , parallel
Packaged: 2014-04-22 22:17:18 UTC; elodie
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-23 06:53:56

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Tue, 22 Apr 2014

Package Rothermel updated to version 1.1 with previous version 1.0 dated 2014-01-20

Title: Rothermel fire spread model for R
Description: R build of Rothermel's (1972) model for surface fire rate of spread with some additional utilities (uncertainty propagation, standard fuel model selection, fuel model optimization by genetic algorithm) and sample datasets.
Author: Giorgio Vacchiano, Davide Ascoli
Maintainer: Giorgio Vacchiano

Diff between Rothermel versions 1.0 dated 2014-01-20 and 1.1 dated 2014-04-22

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More information about Rothermel at CRAN
Permanent link

Package reshape updated to version 0.8.5 with previous version 0.8.4 dated 2011-01-28

Title: Flexibly reshape data.
Description: Reshape lets you flexibly restructure and aggregate data using just two functions: melt and cast.
Author: Hadley Wickham
Maintainer: Hadley Wickham

Diff between reshape versions 0.8.4 dated 2011-01-28 and 0.8.5 dated 2014-04-22

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More information about reshape at CRAN
Permanent link

Package vrtest updated to version 0.96 with previous version 0.95 dated 2010-11-03

Title: Variance Ratio tests and other tests for Martingale Difference Hypothesis
Description: A collection of statistical tests for martingale difference hypothesis
Author: Jae H. Kim
Maintainer: Jae H. Kim

Diff between vrtest versions 0.95 dated 2010-11-03 and 0.96 dated 2014-04-22

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Package VineCopula updated to version 1.3 with previous version 1.2 dated 2013-11-11

Title: Statistical inference of vine copulas
Description: This package provides functions for statistical inference of vine copulas. It contains tools for bivariate exploratory data analysis, bivariate copula selection and (vine) tree construction. Models can be estimated either sequentially or by joint maximum likelihood estimation. Sampling algorithms and plotting methods are also included. Data is assumed to lie in the unit hypercube (so-called copula data). For C- and D-vines links to the package CDVine are provided.
Author: Ulf Schepsmeier, Jakob Stoeber, Eike Christian Brechmann, Benedikt Graeler
Maintainer: Tobias Erhardt

Diff between VineCopula versions 1.2 dated 2013-11-11 and 1.3 dated 2014-04-22

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Package multcomp updated to version 1.3-3 with previous version 1.3-2 dated 2014-02-12

Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book "Multiple Comparisons Using R" (Bretz, Hothorn, Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre], Frank Bretz [aut], Peter Westfall [aut], Richard M. Heiberger [ctb], Andre Schuetzenmeister [ctb]
Maintainer: Torsten Hothorn

Diff between multcomp versions 1.3-2 dated 2014-02-12 and 1.3-3 dated 2014-04-22

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 11 files changed, 116 insertions(+), 185 deletions(-)

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Package igraph updated to version 0.7.1 with previous version 0.7.0 dated 2014-02-05

Title: Network analysis and visualization
Description: Routines for simple graphs and network analysis. igraph can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality indices and much more.
Author: See AUTHORS file.
Maintainer: Gabor Csardi

Diff between igraph versions 0.7.0 dated 2014-02-05 and 0.7.1 dated 2014-04-22

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Package dnet updated to version 1.0.1 with previous version 1.0.0 dated 2014-04-09

Title: Dynamic NETworks via integrative analysis of digitised data in terms of network, ontology and evolution
Description: The 'dnet' package is initiated to fill in the need of an open-source tool for digitised data in an integrative manner in terms of network, ontology and evolution. More specifically, dnet intends to analyse the biological network whose nodes/genes are associated with digitised information such as expression levels across samples. To help make sense of identified networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific age information in major organisms including human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. In summary, dnet aims to deliver an eye-intuitive tool with rich visuals but less inputs.
Author: Hai Fang and Julian Gough
Maintainer: Hai Fang

Diff between dnet versions 1.0.0 dated 2014-04-09 and 1.0.1 dated 2014-04-22

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Package Distance updated to version 0.9 with previous version 0.8.0 dated 2014-01-09

Title: A simple way to fit detection functions to distance sampling data and calculate abundance/density for biological populations.
Description: A library that provides a simple way of fitting detection functions to distance sampling data for both line and point transects. Adjustment term selection, left and right truncation as well as monotonicity constraints and binning are supported. Abundance and density estimates can also be calculated if survey area information is provided.
Author: David Lawrence Miller
Maintainer: David Lawrence Miller

Diff between Distance versions 0.8.0 dated 2014-01-09 and 0.9 dated 2014-04-22

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Package CollocInfer updated to version 1.0.0 with previous version 0.1.7 dated 2012-03-22

Title: Collocation Inference for Dynamic Systems
Description: These functions implement collocation-inference for continuous-time and discrete-time stochastic processes. They provide model-based smoothing, gradient-matching, generalized profiling and forwards prediction error methods.
Author: Giles Hooker , Luo Xiao , James Ramsay
Maintainer: Giles Hooker

Diff between CollocInfer versions 0.1.7 dated 2012-03-22 and 1.0.0 dated 2014-04-22

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Package alm updated to version 0.1.6 with previous version 0.1.4 dated 2014-04-04

Title: R wrapper to the almetrics API platform developed by PLoS
Description: An R interface to the open source article level metrics API created by the Public Library of Science (PLOS). A number of publishers are using the open source app created by PLOS, so you can drop in a different base URL to the functions in this package to get to not only PLOS data, but data for Crossref, and more as the open source PLOS software is used. Obtain rCharts at https://github.com/ramnathv/rCharts.
Author: Scott Chamberlain [aut, cre], Carl Boettiger [aut], Karthik Ram [aut], Fenner Martin [aut]
Maintainer: Scott Chamberlain

Diff between alm versions 0.1.4 dated 2014-04-04 and 0.1.6 dated 2014-04-22

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Package ks updated to version 1.9.2 with previous version 1.9.1 dated 2014-04-11

Title: Kernel smoothing
Description: Kernel smoothers for univariate and multivariate data
Author: Tarn Duong
Maintainer: Tarn Duong

Diff between ks versions 1.9.1 dated 2014-04-11 and 1.9.2 dated 2014-04-22

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New package FDboost with initial version 0.0-5
Package: FDboost
Type: Package
Title: Boosting functional regression models
Version: 0.0-5
Date: 2013-04-29
Author: Sarah Brockhaus
Maintainer: Sarah Brockhaus
Description: Boosting functional regression models
Depends: R (>= 3.0.0), mboost
Imports: Matrix, mgcv, zoo, nnls
Suggests: fda, fields, maps, mapdata
License: GPL-2
Packaged: 2014-04-22 16:09:46 UTC; fabians
Collate: 'FDboost.R' 'baselearners.R' 'crossvalidation.R' 'methods.R' 'bkroneckerTrafo.R' 'utilityFunctions.R'
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-22 20:37:15

More information about FDboost at CRAN
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Package sqlshare updated to version 1.0.3 with previous version 1.0.2 dated 2013-04-12

Title: API for access to SQLShare database
Description: Provides API for executing and retrieving the results of SQL statements on the online SQLShare service provided by the eScience institute at the University of Washington. More information on using SQLShare may be found at the package URL.
Author: Andrew White
Maintainer: Andrew White

Diff between sqlshare versions 1.0.2 dated 2013-04-12 and 1.0.3 dated 2014-04-22

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Package R2MLwiN updated to version 0.2-1 with previous version 0.2-0 dated 2014-03-28

Title: Running MLwiN from within R
Description: R2MLwiN is an R command interface to the MLwiN multilevel modelling software package, allowing users to fit multilevel models using MLwiN from within the R environment.
Author: Zhengzheng Zhang [aut, cre], Chris Charlton [aut], Richard Parker [aut], George Leckie [aut], William Browne [aut]
Maintainer: Zhengzheng Zhang

Diff between R2MLwiN versions 0.2-0 dated 2014-03-28 and 0.2-1 dated 2014-04-22

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New package quipu with initial version 1.9.0
Package: quipu
Type: Package
Title: Summary charts of micro satellite profiles for a set of biological samples
Version: 1.9.0
Date: 2014-04-15
Copyright: International Potato Center
Author: Reinhard Simon, Pablo Carhuapoma, Vilma Hualla, Stef de Haan, Marc Ghislain, Jorge Nunez, Rene Gomez, Felipe de Mendiburu, William Roca, Merideth Bonierbale
Maintainer: Reinhard Simon
Description: Gene banks increasingly use molecular markers for routine characterization of plant collections and farmer managed diversity. The gene bank of the International Potato Center presently uses a micro-satellite marker kit to produce molecular profiles for potato accessions. We have been searching for a compact graphical representation that shows both molecular diversity and accession characteristics - thus permitting biologists and collection curators to have a simple way to interpret molecular data. Inspired by the ancient Andean data recording system we devised a graph that allows for standardized representation while leaving room for updates of the marker kit and the collection of accessions. The graph has been used in several catalogs of potatoes.
License: GPL-2
VignetteBuilder: knitr
Suggests: knitr
Depends: R (>= 3.0.0), stats, agricolae, stringr, pixmap, shiny, xtable
Packaged: 2014-04-22 15:03:04 UTC; rsimon
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-22 18:49:03

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Package mrds updated to version 2.1.5 with previous version 2.1.4 dated 2013-09-23

Title: Mark-Recapture Distance Sampling (mrds)
Description: This package implements mark-recapture distance sampling methods as described in D.L. Borchers, W. Zucchini and Fewster, R.M. (1988), "Mark-recapture models for line transect surveys", Biometrics 54: 1207-1220. and Laake, J.L. (1999) "Distance sampling with independent observers: Reducing bias from heterogeneity by weakening the conditional independence assumption." in Amstrup, G.W., Garner, S.C., Laake, J.L., Manly, B.F.J., McDonald, L.L. and Robertson, D.G. (eds) "Marine mammal survey and assessment methods", Balkema, Rotterdam: 137-148 and Borchers, D.L., Laake, J.L., Southwell, C. and Paxton, C.L.G. "Accommodating unmodelled heterogeneity in double-observer distance sampling surveys". 2006. Biometrics 62:372-378.)
Author: Jeff Laake , David Borchers , Len Thomas , David Miller and Jon Bishop
Maintainer: David Miller

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Package ltmle updated to version 0.9.3-1 with previous version 0.9.3 dated 2013-12-12

Title: Longitudinal Targeted Maximum Likelihood Estimation
Description: Targeted Maximum Likelihood Estimation (TMLE) of treatment/censoring specific mean outcome or marginal structural model for point-treatment and longitudinal data
Author: Joshua Schwab [aut, cre], Samuel Lendle [aut], Maya Petersen [aut], Mark van der Laan [aut], Susan Gruber [ctb]
Maintainer: Joshua Schwab

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Package kcirt updated to version 0.6.0 with previous version 0.5.4 dated 2013-11-12

Title: k-Cube Thurstonian IRT Models
Description: Create, Simulate, Fit, Solve k-Cube Thurstonian IRT Models
Author: Dave Zes, Jimmy Lewis, Dana Landis @ Korn/Ferry International
Maintainer: Dave Zes

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Package ggthemes updated to version 1.7.0 with previous version 1.6.0 dated 2013-12-14

Title: Extra themes, scales and geoms for ggplot
Description: Some extra themes, geoms, and scales for ggplot2.
Author: Jeffrey B. Arnold [aut, cre]
Maintainer: Jeffrey B. Arnold

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Package Bchron updated to version 4.1.1 with previous version 4.1 dated 2014-04-11

Title: Radiocarbon dating, age-depth modelling, relative sea level rate estimation, and non-parametric phase modelling
Description: This package enables quick calibration of radiocarbon dates under various calibration curves (including user generated ones); Age-depth modelling as per the algorithm of Haslett and Parnell (2008); Relative sea level rate estimation incorporating time uncertainty in polynomial regression models; and non-parametric phase modelling via Gaussian mixtures as a means to determine the activity of a site (and as an alternative to the Oxcal function SUM).
Author: Andrew Parnell
Maintainer: Andrew Parnell

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New package statfi with initial version 0.9.06
Package: statfi
Type: Package
Title: statfi R tools
Version: 0.9.06
Date: 2013-04-21
Author: Leo Lahti, Juuso Parkkinen, Joona Lehtomaki
Maintainer: Leo Lahti
Description: Statistics Finland (Tilastokeskus) Open Data R Tools
License: BSD_2_clause + file LICENSE
Depends: R (>= 3.0.2), pxR
URL: https://github.com/rOpenGov/statfi
LazyLoad: yes
Packaged: 2014-04-22 13:17:16 UTC; antagomir
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-22 16:34:19

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Package profr updated to version 0.3.1 with previous version 0.2 dated 2011-01-28

Title: An alternative display for profiling information
Description: profr provides an alternative data structure and visual rendering for the profiling information generated by Rprof.
Author: Hadley Wickham
Maintainer: Hadley Wickham

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Package IQCC updated to version 0.6 with previous version 0.5 dated 2010-05-19

Title: Improved Quality Control Charts
Description: Builds statistical control charts with exact limits for univariate and multivariate cases.
Author: Emanuel P. Barbosa, Flavio M. M. Barros , Elias de Jesus Goncalves , Daniela R. Recchia
Maintainer: Emanuel P. Barbosa

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Package MonetDB.R updated to version 0.9.2 with previous version 0.9.1 dated 2014-03-06

Title: Connect MonetDB to R
Description: Allows to pull data from MonetDB into R
Author: Hannes Muehleisen [aut, cre], Thomas Lumley [ctb], Anthony Damico [ctb]
Maintainer: Hannes Muehleisen

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Package micEconSNQP updated to version 0.6-6 with previous version 0.6-4 dated 2013-11-06

Title: Symmetric Normalized Quadratic Profit Function
Description: Production analysis with the Symmetric Normalized Quadratic (SNQ) profit function
Author: Arne Henningsen
Maintainer: Arne Henningsen

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Package DIFlasso updated to version 1.0-1 with previous version 1.0 dated 2013-08-23

Title: A penalty approach to Differential Item Functioning in Rasch Models
Description: A package to perform DIFlasso, a method to detect DIF (Differential Item Functioning) in Rasch Models. It can handle settings with many covariates and also metric covariates.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger

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Package ads updated to version 1.5-2.1 with previous version 1.4 dated 2014-01-07

Title: Spatial point patterns analysis
Description: Perform first- and second-order multi-scale analyses derived from Ripley K-function, for univariate, multivariate and marked mapped data in rectangular, circular or irregular shaped sampling windows, with tests of statistical significance based on Monte Carlo simulations.
Author: R. Pelissier and F. Goreaud
Maintainer: Raphael Pelissier

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Package R2STATS updated to version 0.68-38 with previous version 0.68-35 dated 2014-03-18

Title: A GTK GUI for fitting and comparing GLM and GLMM in R
Description: R2STATS is a gWidgetsRGtk2 GUI for fitting and comparing GLM or GLMM (based on Douglas Bates' lme4 package) in R. It is designed to make comparisons between numerous models easy, both numerically and graphically, which may be useful for teaching. Relevant plots are automatically produced for each model family. R2STATS is *not* a generic graphical interface for R, but a GUI for statistical modelling in a model comparison approach.
Author: Yvonnick Noel
Maintainer: Yvonnick Noel

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Package micEconAids updated to version 0.6-14 with previous version 0.6-12 dated 2012-12-26

Title: Demand Analysis with the Almost Ideal Demand System (AIDS)
Description: Demand analysis with the Almost Ideal Demand System (AIDS) suggested by Deaton and Muellbauer (1980)
Author: Arne Henningsen
Maintainer: Arne Henningsen

Diff between micEconAids versions 0.6-12 dated 2012-12-26 and 0.6-14 dated 2014-04-22

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Package micEcon updated to version 0.6-12 with previous version 0.6-10 dated 2012-06-02

Title: Microeconomic Analysis and Modelling
Description: Tools for microeconomic analysis and microeconomic modelling
Author: Arne Henningsen
Maintainer: Arne Henningsen

Diff between micEcon versions 0.6-10 dated 2012-06-02 and 0.6-12 dated 2014-04-22

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Package yuima updated to version 1.0.10 with previous version 1.0.9 dated 2014-04-18

Title: The YUIMA Project package for SDEs
Description: Simulation and Inference for Stochastic Differential Equations
Author: YUIMA Project Team
Maintainer: Stefano M. Iacus

Diff between yuima versions 1.0.9 dated 2014-04-18 and 1.0.10 dated 2014-04-22

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Package scales updated to version 0.2.4 with previous version 0.2.3 dated 2012-12-05

Title: Scale functions for graphics.
Description: Scales map data to aesthetics, and provide methods for automatically determining breaks and labels for axes and legends.
Author: Hadley Wickham
Maintainer: Hadley Wickham

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Package RcmdrPlugin.EZR updated to version 1.24 with previous version 1.23 dated 2014-03-04

Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN-10: 4498109007), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda

Diff between RcmdrPlugin.EZR versions 1.23 dated 2014-03-04 and 1.24 dated 2014-04-22

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Package sinartra (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-01-14 0.1.1
2010-09-30 0.1

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Package hof (with last version 0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-12-02 0.1

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Package mutatr (with last version 0.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-07-05 0.1.2
2010-06-11 0.1.1
2009-11-16 0.1

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Package hints (with last version 1.0.1-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2008-03-27 1.0.1-1
2007-11-27 1.0.1
2007-10-01 1.0

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Package userfriendlyscience updated to version 0.1-2 with previous version 0.1.1 dated 2014-04-17

Title: Quantitative analysis made accessible
Description: This package contains a number of functions that serve two goals: first, make R more accessible to people migrating from SPSS by adding a number of functions that behave roughly like their SPSS equivalents; and second, make a number of slightly more advanced functions more userfriendly to relatively novice users.
Author: Gjalt-Jorn Peters
Maintainer: Gjalt-Jorn Peters

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Package polyapost updated to version 1.1-6 with previous version 1.1-5 dated 2014-03-31

Title: Simulating from the Polya posterior
Description: Generate dependent samples from a non-full dimensional polytope via a Markov Chain sampler
Author: Glen Meeden and Radu Lazar
Maintainer: Glen Meeden

Diff between polyapost versions 1.1-5 dated 2014-03-31 and 1.1-6 dated 2014-04-22

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Package opm updated to version 1.1.0 with previous version 1.0.24 dated 2013-12-17

Title: Analysing Phenotype Microarray and Growth Curve Data
Description: Tools for analysing OmniLog(R) and MicroStation(TM) phenotype microarray (PM) data as produced by the devices distributed by BIOLOG Inc. as well as similar kinds of data such as growth curves. Major facilities are plotting data, accurately estimating curve parameters, comparing and discretising data, creating phylogenetic formats and reports for taxonomic journals, drawing the PM analysis results in biochemical pathway graphs optionally including genome annotations, running multiple comparisons of means, easy interaction with powerful feature-selection approaches, integrating metadata, using the YAML format for the storage of data and metadata, batch conversion of large numbers of files, and database I/O. (The suggested mboostDevel is from R-Forge and not necessary.)
Author: Markus Goeker, with contributions by Benjamin Hofner, Lea A.I. Vaas, Johannes Sikorski, Nora Buddruhs and Anne Fiebig
Maintainer: Markus Goeker

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 opm-1.1.0/opm/man/vaas_4.Rd                       |   16 
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 120 files changed, 5273 insertions(+), 2672 deletions(-)

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Package memoise updated to version 0.2.1 with previous version 0.1 dated 2010-09-03

Title: Memoise functions
Description: Cache the results of a function so that when you call it again with the same arguments it returns the pre-computed value.
Author: Hadley Wickham
Maintainer: Hadley Wickham

Diff between memoise versions 0.1 dated 2010-09-03 and 0.2.1 dated 2014-04-22

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 memoise-0.2.1/memoise/DESCRIPTION        |   16 ++--
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 memoise-0.2.1/memoise/R/cache.r          |   22 ++---
 memoise-0.2.1/memoise/R/memoise.r        |  122 ++++++++++++++++++++++++++-----
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 memoise-0.2.1/memoise/man/forget.Rd      |   28 +++++--
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 12 files changed, 155 insertions(+), 42 deletions(-)

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Package dynamicTreeCut updated to version 1.62 with previous version 1.60-1 dated 2013-11-04

Title: Methods for detection of clusters in hierarchical clustering dendrograms.
Description: Contains methods for detection of clusters in hierarchical clustering dendrograms.
Author: Peter Langfelder and Bin Zhang , with contributions from Steve Horvath
Maintainer: Peter Langfelder

Diff between dynamicTreeCut versions 1.60-1 dated 2013-11-04 and 1.62 dated 2014-04-22

 Changelog                     |   20 +++++++++++
 DESCRIPTION                   |    8 ++--
 MD5                           |   14 ++++----
 R/cutreeWrapper.R             |    6 +++
 R/treeCut.R                   |   71 +++++++++++++++++++++++++++++-------------
 man/cutreeDynamic.Rd          |   20 +++++++++++
 man/cutreeHybrid.Rd           |   18 ++++++++++
 man/dynamicTreeCut-package.Rd |    4 +-
 8 files changed, 127 insertions(+), 34 deletions(-)

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Package bear updated to version 2.6.3 with previous version 2.6.2 dated 2014-02-24

Title: Average bioequivalence and bioavailability data analysis tool
Description: An average bioequivalence (ABE) and bioavailability data analysis tool including sample size estimation, noncompartmental analysis (NCA), ANOVA (lm) for a standard RT/TR 2x2x2 crossover design or a parallel study. And linear mixed effect model (lme of nlme) for a 2-treatment, 2-sequence with 2 periods or more (i.e. 2x2x3/2x2x4) replicate crossover design.
Author: Hsin-ya Lee, Yung-jin Lee
Maintainer: Yung-jin Lee

Diff between bear versions 2.6.2 dated 2014-02-24 and 2.6.3 dated 2014-04-22

 DESCRIPTION             |    8 
 MD5                     |   38 +-
 NEWS                    |   19 +
 R/BANOVA.r              |  105 +++---
 R/BANOVAcsv.r           |   23 +
 R/NCAoutput.r           |   52 +--
 R/NCAplot.r             |  823 +++++++++++++++++++++---------------------------
 R/RepMIX.r              |    2 
 R/about.bear.r          |    2 
 R/bear.setup.r          |    4 
 R/demoBANOVA.r          |    6 
 R/demo_datasets_gen.r   |    4 
 R/description_plot.r    |   10 
 R/description_version.r |    6 
 R/go.r                  |    6 
 R/go2menu.r             |   72 ----
 R/icd.check.r           |    2 
 R/lm.mod.r              |    7 
 R/logo_plot_desc.r      |    6 
 R/zzz.R                 |    2 
 20 files changed, 561 insertions(+), 636 deletions(-)

More information about bear at CRAN
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