Sun, 30 Apr 2017

Package rootWishart updated to version 0.4.0 with previous version 0.3.0 dated 2016-07-13

Title: Distribution of Largest Root for Single and Double Wishart Settings
Description: Functions for hypothesis testing in single and double Wishart settings, based on Roy's largest root. This test statistic is especially useful in multivariate analysis. The computations are based on results by Chiani (2014) <DOI:10.1016/j.jmva.2014.04.002> and Chiani (2016) <DOI:10.1016/j.jmva.2015.10.007>. They use the fact that the CDF is related to the Pfaffian of a matrix that can be computed in a finite number of iterations. This package takes advantage of the Boost and Eigen C++ libraries to perform multi-precision linear algebra.
Author: Maxime Turgeon [aut, cre]
Maintainer: Maxime Turgeon <maxime.turgeon@mail.mcgill.ca>

Diff between rootWishart versions 0.3.0 dated 2016-07-13 and 0.4.0 dated 2017-04-30

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Package seacarb updated to version 3.1.2 with previous version 3.1.1 dated 2016-11-22

Title: Seawater Carbonate Chemistry
Description: Calculates parameters of the seawater carbonate system and assists the design of ocean acidification perturbation experiments.
Author: Jean-Pierre Gattuso [aut, cre, cph], Jean-Marie Epitalon [aut], Heloise Lavigne [aut], James Orr [aut], Bernard Gentili [ctb], Andreas Hofmann [ctb], Aurélien Proye [ctb], Karline Soetaert [ctb], James Rae [ctb]
Maintainer: Jean-Pierre Gattuso <gattuso@obs-vlfr.fr>

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Package RGCCA updated to version 2.1.1 with previous version 2.1 dated 2017-01-22

Title: Regularized and Sparse Generalized Canonical Correlation Analysis for Multiblock Data
Description: Multiblock data analysis concerns the analysis of several sets of variables (blocks) observed on the same group of individuals. The main aims of the RGCCA package are: (i) to study the relationships between blocks and (ii) to identify subsets of variables of each block which are active in their relationships with the other blocks.
Author: Arthur Tenenhaus and Vincent Guillemot
Maintainer: Arthur Tenenhaus <arthur.tenenhaus@centralesupelec.fr>

Diff between RGCCA versions 2.1 dated 2017-01-22 and 2.1.1 dated 2017-04-30

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Package hunspell updated to version 2.4 with previous version 2.3 dated 2016-12-07

Title: High-Performance Stemmer, Tokenizer, and Spell Checker for R
Description: A spell checker and morphological analyzer library designed for languages with rich morphology and complex word compounding or character encoding. The package can check and analyze individual words as well as search for incorrect words within a text, latex, html or xml document. Use the 'devtools' package to spell check R documentation with 'hunspell'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between hunspell versions 2.3 dated 2016-12-07 and 2.4 dated 2017-04-30

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Package cubfits updated to version 0.1-3 with previous version 0.1-2 dated 2016-01-24

Title: Codon Usage Bias Fits
Description: Estimating mutation and selection coefficients on synonymous codon bias usage based on models of ribosome overhead cost (ROC). Multinomial logistic regression and Markov Chain Monte Carlo are used to estimate and predict protein production rates with/without the presence of expressions and measurement errors. Work flows with examples for simulation, estimation and prediction processes are also provided with parallelization speedup. The whole framework is tested with yeast genome and gene expression data of Yassour, et al. (2009) <doi:10.1073/pnas.0812841106>.
Author: Wei-Chen Chen [aut, cre], Russell Zaretzki [aut], William Howell [aut], Cedric Landerer [aut], Drew Schmidt [aut], Michael A. Gilchrist [aut], Preston Hewgley [ctb], Students REU13 [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

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Package aws.alexa updated to version 0.1.4 with previous version 0.1.2 dated 2016-06-02

Title: Client for the Amazon Alexa Web Information Services API
Description: Use the Amazon Alexa Web Information Services API to find information about domains, including the kind of content that they carry, how popular are they---rank and traffic history, sites linking to them, among other things. See <https://aws.amazon.com/awis/> for more information.
Author: Gaurav Sood [aut, cre], Thomas Leeper [ctb]
Maintainer: Gaurav Sood <gsood07@gmail.com>

Diff between aws.alexa versions 0.1.2 dated 2016-06-02 and 0.1.4 dated 2017-04-30

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Package timekit updated to version 0.2.0 with previous version 0.1.0 dated 2017-04-19

Title: A Collection of Tools for Working with Time Series in R
Description: Coerce between time-based tibbles ('tbl') and 'xts', 'zoo', and 'ts'. Get the time series index, signature, and summary from time series objects and time-based tibbles. Create future time series based on properties of existing time series index.
Author: Matt Dancho [aut, cre], Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>

Diff between timekit versions 0.1.0 dated 2017-04-19 and 0.2.0 dated 2017-04-30

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Package spbabel updated to version 0.4.6 with previous version 0.4.5 dated 2016-10-06

Title: Convert Spatial Data Using Tidy Tables
Description: Tools to convert from specific formats to more general forms of spatial data. Using tables to store the actual entities present in spatial data provides flexibility, and the functions here deliberately minimize the level of interpretation applied, leaving that for specific applications. Includes support for simple features, round-trip for 'Spatial' classes and long-form tables, analogous to 'ggplot2::fortify'. There is also a more 'normal form' representation that decomposes simple features and their kin to tables of objects, parts, and unique coordinates.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>

Diff between spbabel versions 0.4.5 dated 2016-10-06 and 0.4.6 dated 2017-04-30

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New package SPADAR with initial version 1.0
Package: SPADAR
Type: Package
Title: Spherical Projections of Astronomical Data
Version: 1.0
Date: 2017-04-29
Author: Alberto Krone-Martins
Maintainer: Alberto Krone-Martins <algol@sim.ul.pt>
Description: Provides easy to use functions to create all-sky grid plots of widely used astronomical coordinate systems (equatorial, ecliptic, galactic) and scatter plots of data on any of these systems including on-the-fly system conversion. It supports any type of spherical projection to the plane defined by the 'mapproj' package.
License: GPL (>= 3)
Depends: mapproj, RCEIM
LazyData: true
Packaged: 2017-04-30 19:44:16 UTC; brain
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2017-04-30 20:26:07 UTC

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Package rmcfs updated to version 1.2.5 with previous version 1.2.4 dated 2017-03-12

Title: The MCFS-ID Algorithm for Feature Selection and Interdependency Discovery
Description: MCFS-ID (Monte Carlo Feature Selection and Interdependency Discovery) is a Monte Carlo method-based tool for feature selection. It also allows for the discovery of interdependencies between the relevant features. MCFS-ID is particularly suitable for the analysis of high-dimensional, 'small n large p' transactional and biological data.
Author: Michal Draminski [aut, cre], Jacek Koronacki [aut], Julian Zubek [ctb]
Maintainer: Michal Draminski <michal.draminski@ipipan.waw.pl>

Diff between rmcfs versions 1.2.4 dated 2017-03-12 and 1.2.5 dated 2017-04-30

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New package pafdR with initial version 1.0
Package: pafdR
Title: Book Companion for Processing and Analyzing Financial Data with R
Version: 1.0
Authors@R: person("Marcelo", "Perlin", email = "marceloperlin@gmail.com", role = c("aut", "cre"))
Description: Provides access to material from the book "Processing and Analyzing Financial Data with R" by Marcelo Perlin (2017) available at <https://sites.google.com/view/pafdr/home>.
Date: 2017-04-29
Depends: R (>= 3.3.3), exams, stringr
Imports: curl, utils,stats
License: GPL-2
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown, testthat, ggplot2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-04-29 23:08:53 UTC; marcelo
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Repository: CRAN
Date/Publication: 2017-04-30 20:22:31 UTC

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Permanent link

Package DstarM updated to version 0.2.2 with previous version 0.2.1 dated 2017-02-04

Title: Analyze Two Choice Reaction Time Data with the D*M Method
Description: A collection of functions to estimate parameters of a diffusion model via a D*M analysis. Build in models are: the Ratcliff diffusion model, the RWiener diffusion model, and Linear Ballistic Accumulator models. Custom models functions can be specified as long as they have a density function.
Author: Don van den Bergh, Stijn Verdonck, Francis Tuerlinckx
Maintainer: Don van den Bergh <donvdbergh@hotmail.com>

Diff between DstarM versions 0.2.1 dated 2017-02-04 and 0.2.2 dated 2017-04-30

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Package DDRTree updated to version 0.1.5 with previous version 0.1.4 dated 2016-07-25

Title: Learning Principal Graphs with DDRTree
Description: Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.
Author: Xiaojie Qiu, Cole Trapnell, Qi Mao, Li Wang
Maintainer: Xiaojie Qiu <xqiu@uw.edu>

Diff between DDRTree versions 0.1.4 dated 2016-07-25 and 0.1.5 dated 2017-04-30

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New package congressbr with initial version 0.1.0
Package: congressbr
Type: Package
Title: Downloads, Unpacks and Tidies Legislative Data from the Brazilian Federal Senate and Chamber of Deputies
Version: 0.1.0
Author: Robert Myles McDonnell, Guilherme Jardim Duarte and Danilo Freire
Maintainer: Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>
Description: Downloads and tidies data from the Brazilian Federal Senate and Chamber of Deputies Application Programming Interfaces available at <http://legis.senado.gov.br/dadosabertos/> and <http://www.camara.leg.br/SitCamaraWS/> respectively.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.0)
Imports: dplyr (>= 0.5.0), purrr (>= 0.2.2), xml2 (>= 1.1.1), httr(>= 1.2.1), lubridate (>= 1.6.0), magrittr (>= 1.5), stringi (>= 1.1.2), tidyr (>= 0.6.1), stringr (>= 1.2.0), tibble (>= 1.3.0), pscl (>= 1.4.9)
RoxygenNote: 6.0.1
Suggests: covr, knitr, rmarkdown, ggplot2, devtools
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-04-29 22:17:31 UTC; sussa
Repository: CRAN
Date/Publication: 2017-04-30 20:21:13 UTC

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Package configr updated to version 0.2.2 with previous version 0.2.1 dated 2017-04-01

Title: An Implementation of Parsing and Writing Configuration File (JSON/INI/YAML/TOML)
Description: Implements the JSON, INI, YAML and TOML parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'.
Author: Jianfeng Li [aut, cre]
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>

Diff between configr versions 0.2.1 dated 2017-04-01 and 0.2.2 dated 2017-04-30

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Package BETS updated to version 0.2.1 with previous version 0.2.0 dated 2017-04-12

Title: Brazilian Economic Time Series
Description: It provides access to and information about the most important Brazilian economic time series - from the Getulio Vargas Foundation, the Central Bank of Brazil and the Brazilian Institute of Geography and Statistics. It also presents tools for managing, analysing (e.g. generating dynamic reports with a complete analysis of a series) and exporting these time series.
Author: Pedro Costa Ferreira [aut, cre], Talitha Speranza [aut], Jonatha Azevedo [aut]
Maintainer: Pedro Costa Ferreira <pedro.guilherme@fgv.br>

Diff between BETS versions 0.2.0 dated 2017-04-12 and 0.2.1 dated 2017-04-30

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Package BART updated to version 1.2 with previous version 1.1 dated 2017-04-13

Title: Bayesian Additive Regression Trees
Description: Bayesian Additive Regression Trees (BART) provide flexible nonparametric modeling of covariates for continuous, binary and time-to-event outcomes. For more information on BART, see Chipman, George and McCulloch (2010) <doi:10.1214/09-AOAS285> and Sparapani, Logan, McCulloch and Laud (2016) <doi:10.1002/sim.6893>.
Author: Robert McCulloch <robert.e.mcculloch@gmail.com> and Rodney Sparapani <rsparapa@mcw.edu>
Maintainer: Rodney Sparapani <rsparapa@mcw.edu>

Diff between BART versions 1.1 dated 2017-04-13 and 1.2 dated 2017-04-30

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Package textreadr updated to version 0.5.1 with previous version 0.3.1 dated 2017-02-19

Title: Read Text Documents into R
Description: A small collection of convenience tools for reading text documents into R.
Author: Tyler Rinker [aut, cre], Bryan Goodrich [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>

Diff between textreadr versions 0.3.1 dated 2017-02-19 and 0.5.1 dated 2017-04-30

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Package MetaboList updated to version 1.2 with previous version 1.1 dated 2017-04-09

Title: Annotation of Metabolites from Liquid Chromatography-Mass Spectrometry Data
Description: Automatic metabolite annotation from Liquid Chromatography-Mass Spectrometry (LC-MS and LC-MS/MS) data from .mzXML files, providing an inclusion list of metabolites/fragments (Only the ion mass). The function returns the identification and quantification of the peaks presented in the sample, as well as the non-identified metabolites/fragments.
Author: Manuel David Peris Diaz
Maintainer: Manuel David Peris Diaz <madape@alumni.uv.es>

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Package icesSAG updated to version 1.3-0 with previous version 1.2-1 dated 2017-03-24

Title: Stock Assessment Graphs Database Web Services
Description: R interface to access the web services of the ICES Stock Assessment Graphs database <http://sg.ices.dk>.
Author: Colin Millar [aut, cre], Scott Large [aut], Arni Magnusson [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>

Diff between icesSAG versions 1.2-1 dated 2017-03-24 and 1.3-0 dated 2017-04-30

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Package fdasrvf updated to version 1.8.1 with previous version 1.8.0 dated 2017-04-17

Title: Elastic Functional Data Analysis
Description: Performs alignment, PCA, and modeling of multidimensional and unidimensional functions using the square-root velocity framework (Srivastava et al., 2011 <arXiv:1103.3817> and Tucker et al., 2014 <DOI:10.1016/j.csda.2012.12.001>). This framework allows for elastic analysis of functional data through phase and amplitude separation.
Author: J. Derek Tucker <jdtuck@sandia.gov>
Maintainer: J. Derek Tucker <jdtuck@sandia.gov>

Diff between fdasrvf versions 1.8.0 dated 2017-04-17 and 1.8.1 dated 2017-04-30

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Package PAC updated to version 1.0.8 with previous version 1.0.7 dated 2017-03-12

Title: Partition-Assisted Clustering and Multiple Alignments of Networks
Description: Implements Partition-Assisted Clustering and Multiple Alignments of Networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set.
Author: Ye Henry Li, Dangna Li
Maintainer: Ye Henry Li <ywli@stanford.edu>

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Package glmnet updated to version 2.0-8 with previous version 2.0-5 dated 2016-03-17

Title: Lasso and Elastic-Net Regularized Generalized Linear Models
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression and the Cox model. Two recent additions are the multiple-response Gaussian, and the grouped multinomial regression. The algorithm uses cyclical coordinate descent in a path-wise fashion, as described in the paper linked to via the URL below.
Author: Jerome Friedman, Trevor Hastie, Noah Simon, Rob Tibshirani
Maintainer: Trevor Hastie <hastie@stanford.edu>

Diff between glmnet versions 2.0-5 dated 2016-03-17 and 2.0-8 dated 2017-04-30

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Package fmbasics updated to version 0.2.0 with previous version 0.1.0 dated 2017-02-12

Title: Financial Market Building Blocks
Description: Implements basic financial market objects like currencies, currency pairs, interest rates and interest rate indices. You will be able to use Benchmark instances of these objects which have been defined using their most common conventions or those defined by International Swap Dealer Association (ISDA, <http://www2.isda.org>) legal documentation.
Author: Imanuel Costigan <i.costigan@me.com>
Maintainer: Imanuel Costigan <i.costigan@me.com>

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Package ClueR updated to version 1.2 with previous version 1.1 dated 2015-10-27

Title: Cluster Evaluation
Description: CLUster Evaluation (CLUE) is a computational method for identifying optimal number of clusters in a given time-course dataset clustered by cmeans or kmeans algorithms and subsequently identify key kinases or pathways from each cluster. Its implementation in R is called ClueR. See Readme on <https://github.com/PengyiYang/ClueR> for more details.
Author: Pengyi Yang
Maintainer: Pengyi Yang <pengyi.yang@sydney.edu.au>

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Package bmixture updated to version 0.4 with previous version 0.3 dated 2017-02-08

Title: Bayesian Estimation for Finite Mixture of Distributions
Description: Provides statistical tools for Bayesian estimation for finite mixture of distributions, mainly mixture of Gamma, Normal and t-distributions. The package is implemented the recent improvements in Bayesian literature for the finite mixture of distributions, including Mohammadi and et al. (2013) <doi:10.1007/s00180-012-0323-3> and Mohammadi and Salehi-Rad (2012) <doi:10.1080/03610918.2011.588358>.
Author: Abdolreza Mohammadi
Maintainer: Abdolreza Mohammadi <a.mohammadi@uvt.nl>

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Sat, 29 Apr 2017

Package radiant updated to version 0.8.0 with previous version 0.6.0 dated 2016-09-22

Title: Business Analytics using R and Shiny
Description: A platform-independent browser-based interface for business analytics in R, based on the shiny package. The application combines the functionality of radiant.data, radiant.design, radiant.basics, radiant.model, and radiant.multivariate.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>

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Package phyclust updated to version 0.1-19 with previous version 0.1-18 dated 2016-12-11

Title: Phylogenetic Clustering (Phyloclustering)
Description: Phylogenetic clustering (phyloclustering) is an evolutionary Continuous Time Markov Chain model-based approach to identify population structure from molecular data without assuming linkage equilibrium. The package phyclust (Chen 2011) provides a convenient implementation of phyloclustering for DNA and SNP data, capable of clustering individuals into subpopulations and identifying molecular sequences representative of those subpopulations. It is designed in C for performance, interfaced with R for visualization, and incorporates other popular open source programs including ms (Hudson 2002) <doi:10.1093/bioinformatics/18.2.337>, seq-gen (Rambaut and Grassly 1997) <doi:10.1093/bioinformatics/13.3.235>, Hap-Clustering (Tzeng 2005) <doi:10.1002/gepi.20063> and PAML baseml (Yang 1997, 2007) <doi:10.1093/bioinformatics/13.5.555>, <doi:10.1093/molbev/msm088>, for simulating data, additional analyses, and searching the best tree. See the phyclust website for more information, documentations and examples.
Author: Wei-Chen Chen [aut, cre], Karin Dorman [aut]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

Diff between phyclust versions 0.1-18 dated 2016-12-11 and 0.1-19 dated 2017-04-29

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Package fitur updated to version 0.3.0 with previous version 0.2.0 dated 2017-04-04

Title: Fit Univariate Distributions
Description: Wrapper for computing parameters and then assigning to distribution function families.
Author: Thomas Roh [aut, cre]
Maintainer: Thomas Roh <thmsroh@gmail.com>

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New package dparser with initial version 0.1.3
Package: dparser
Title: Port of Dparser Package
Version: 0.1.3
Authors@R: c(person("Matthew", "Fidler", email = "matthew.fidler@gmail.com", role = c("aut", "cre")), person("John", "Plevyak", role = c("aut"), email = "jplevyak@gmail.com"))
Imports: digest, methods
Suggests: rex, covr, testthat, knitr, devtools,
Description: A Scannerless GLR parser/parser generator. Note that GLR standing for "generalized LR", where L stands for "left-to-right" and R stands for "rightmost (derivation)". For more information see <https://en.wikipedia.org/wiki/GLR_parser>. This parser is based on the Tomita (1987) algorithm. (Paper can be found at <http://acl-arc.comp.nus.edu.sg/archives/acl-arc-090501d3/data/pdf/anthology-PDF/J/J87/J87-1004.pdf>). The original dparser package documentation can be found at <http://dparser.sourceforge.net/>. This allows you to add mini-languages to R (like RxODE's ODE mini-language Wang, Hallow, and James 2015 <DOI:10.1002/psp4.12052>) or to parse other languages like NONMEM to automatically translate them to R code. To use this in your code, add a LinkingTo 'dparser' in your DESCRIPTION file and instead of using '#include <dparse.h>' use '#include <dparser.h>'. This also provides a R-based port of the make_dparser <http://dparser.sourceforge.net/d/make_dparser.cat> command called 'mkdparser'. Additionally you can parse an arbitrary grammar within R using the 'dparse' function.
Depends: R (>= 3.2.3)
License: BSD_3_clause + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: yes
Packaged: 2017-04-29 19:58:11 UTC; FIDLEMA3
Author: Matthew Fidler [aut, cre], John Plevyak [aut]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Repository: CRAN
Date/Publication: 2017-04-29 21:21:01 UTC

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Package parfm updated to version 2.7.5 with previous version 2.7.1 dated 2017-01-30

Title: Parametric Frailty Models
Description: Fits Parametric Frailty Models by maximum marginal likelihood. Possible baseline hazards: exponential, Weibull, inverse Weibull (Fréchet), Gompertz, lognormal, log-skew-normal, and loglogistic. Possible Frailty distributions: gamma, positive stable, inverse Gaussian and lognormal.
Author: Federico Rotolo [aut, cre], Marco Munda [aut], Andrea Callegaro [ctb]
Maintainer: Federico Rotolo <federico.rotolo@gustaveroussy.fr>

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Package np updated to version 0.60-3 with previous version 0.60-2 dated 2014-06-28

Title: Nonparametric Kernel Smoothing Methods for Mixed Data Types
Description: Nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC:www.nserc.ca), the Social Sciences and Humanities Research Council of Canada (SSHRC:www.sshrc.ca), and the Shared Hierarchical Academic Research Computing Network (SHARCNET:www.sharcnet.ca).
Author: Jeffrey S. Racine [aut, cre], Tristen Hayfield [aut]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>

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Package yuima updated to version 1.6.4 with previous version 1.5.9 dated 2017-02-16

Title: The YUIMA Project Package for SDEs
Description: Simulation and Inference for SDEs and Other Stochastic Processes.
Author: YUIMA Project Team
Maintainer: Stefano M. Iacus <stefano.iacus@unimi.it>

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Package pim updated to version 2.0.1 with previous version 2.0.0.2 dated 2016-06-27

Title: Fit Probabilistic Index Models
Description: Fit a probabilistic index model as described in Thas et al <doi:10.1111/j.1467-9868.2011.01020.x>. The interface to the modeling function has changed in this new version. The old version is still available at R-Forge. You can install the old package using install.packages('pimold', repos = 'http://R-Forge.R-project.org').
Author: Joris Meys [aut, cre], Jan De Neve [aut], Nick Sabbe [aut], Gustavo Guimaraes de Castro Amorim [aut]
Maintainer: Joris Meys <Joris.Meys@UGent.be>

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Package photobiology updated to version 0.9.15 with previous version 0.9.14 dated 2017-03-20

Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use in photobiology and radiation meteorology and climatology. Calculation of effective (weighted) and not-weighted irradiances/doses, fluence rates, transmittance, reflectance, absorptance, absorbance and diverse ratios and other derived quantities from spectral data. Local maxima and minima. Conversion between energy- and photon-based units. Wavelength interpolation. Astronomical calculations related solar angles and day length. Colours and vision.
Author: Pedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

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Package officer updated to version 0.1.2 with previous version 0.1.1 dated 2017-03-12

Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R. The package focus on tabular and graphical reporting from R; it also provides two functions that let users get document content into data objects. A set of functions lets add and remove images, tables and paragraphs of text in new or existing documents. When working with 'PowerPoint' presentations, slides can be added or removed; shapes inside slides can also be added or removed. When working with 'Word' documents, a cursor can be used to help insert or delete content at a specific location in the document. The package does not require any installation of Microsoft product to be able to write Microsoft files.
Author: David Gohel [aut, cre]
Maintainer: David Gohel <david.gohel@ardata.fr>

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Package MixSim updated to version 1.1-3 with previous version 1.1-2 dated 2015-10-22

Title: Simulating Data to Study Performance of Clustering Algorithms
Description: The utility of this package is in simulating mixtures of Gaussian distributions with different levels of overlap between mixture components. Pairwise overlap, defined as a sum of two misclassification probabilities, measures the degree of interaction between components and can be readily employed to control the clustering complexity of datasets simulated from mixtures. These datasets can then be used for systematic performance investigation of clustering and finite mixture modeling algorithms. Among other capabilities of 'MixSim', there are computing the exact overlap for Gaussian mixtures, simulating Gaussian and non-Gaussian data, simulating outliers and noise variables, calculating various measures of agreement between two partitionings, and constructing parallel distribution plots for the graphical display of finite mixture models.
Author: Volodymyr Melnykov [aut], Wei-Chen Chen [aut, cre], Ranjan Maitra [aut], Robert Davies [ctb] (quadratic form probabilities), Stephen Moshier [ctb] (eigenvalue calculations), Rouben Rostamian [ctb] (memory allocation)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

Diff between MixSim versions 1.1-2 dated 2015-10-22 and 1.1-3 dated 2017-04-29

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Package GADMTools updated to version 2.1-1 with previous version 2.0-1 dated 2017-03-12

Title: Easy Use of 'GADM' Shapefiles
Description: Manipulate, assemble, export <http://www.gadm.org> shapefiles. Create choropleth, heatmaps, dots plot, proportional dots and more.
Author: Jean Pierre Decorps [aut, cre], Morgane Vallee [ctb]
Maintainer: Jean Pierre Decorps <jp.decorps@epiconcept.fr>

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Package shinymaterial updated to version 0.2.1 with previous version 0.2.0 dated 2017-04-28

Title: Implement Material Design in Shiny Applications
Description: Allows shiny developers to incorporate UI elements based on Google's Material design. See <https://material.io/guidelines/> for more information.
Author: Eric Anderson [aut, cre], Alvin Wang [ctb, cph] (Materialize CSS library), Alan Chang [ctb, cph] (Materialize CSS library), Alex Mark [ctb, cph] (Materialize CSS library), Kevin Louie [ctb, cph] (Materialize CSS library)
Maintainer: Eric Anderson <eric.ray.anderson@gmail.com>

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Package mlxR updated to version 3.2.0 with previous version 3.1.0 dated 2016-09-16

Title: Simulation of Longitudinal Data
Description: Simulation and visualization of complex models for longitudinal data. The models are encoded using the model coding language 'Mlxtran', automatically converted into C++ codes, compiled on the fly and linked to R using the 'Rcpp' package. That allows one to implement very easily complex ODE-based models and complex statistical models, including mixed effects models, for continuous, count, categorical, and time-to-event data.
Author: Marc Lavielle [aut, cre], Raphael Kuate [ctb]
Maintainer: Marc Lavielle <Marc.Lavielle@inria.fr>

Diff between mlxR versions 3.1.0 dated 2016-09-16 and 3.2.0 dated 2017-04-29

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New package purrrlyr with initial version 0.0.1
Package: purrrlyr
Title: Tools at the Intersection of 'purrr' and 'dplyr'
Version: 0.0.1
Authors@R: c( person("Hadley", "Wickham", , "hadley@rstudio.com", c("aut", "cre")), person("Lionel", "Henry", , "lionel.hry@gmail.com", "ctb"), person("RStudio", role = "cph") )
Description: Some functions at the intersection of 'dplyr' and 'purrr' that formerly lived in 'purrr'.
License: GPL-3 | file LICENSE
LazyData: true
Imports: magrittr (>= 1.5), dplyr (>= 0.4.3), purrr, Rcpp, lazyeval (>= 0.2.0)
Suggests: testthat, covr
LinkingTo: Rcpp, BH
URL: https://github.com/hadley/purrrlyr
BugReports: https://github.com/hadley/purrrlyr/issues
RoxygenNote: 6.0.1
NeedsCompilation: yes
Packaged: 2017-04-25 19:49:55 UTC; hadley
Author: Hadley Wickham [aut, cre], Lionel Henry [ctb], RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Repository: CRAN
Date/Publication: 2017-04-29 15:00:44 UTC

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New package ChocoLattes with initial version 0.1.0
Package: ChocoLattes
Type: Package
Title: Processing Data from Lattes CV Files
Date: 2017-4-28
Version: 0.1.0
Imports: XML, tools, ggplot2, plotly, rmarkdown, knitr, WriteXLS, utils, grDevices, R.utils
Depends: R (>= 3.3.1)
Author: Felipe Campelo
Maintainer: Felipe Campelo <fcampelo@ufmg.br>
Description: Processes data from Lattes CV (<http://lattes.cnpq.br/>) XML files. Extract, condition, and plot lists of journal and conference papers, book chapters, books, and more.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-29 13:42:50 UTC; fcampelo
Repository: CRAN
Date/Publication: 2017-04-29 14:44:28 UTC

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Package usmap updated to version 0.2.0 with previous version 0.1.0 dated 2017-01-29

Title: US Maps Including Alaska and Hawaii
Description: Obtain United States map data frames of varying region types (e.g. county, state). The map data frames include Alaska and Hawaii conveniently placed to the bottom left, as they appear in most maps of the US. Convenience functions for plotting choropleths and working with FIPS codes are also provided.
Author: Paolo Di Lorenzo [aut, cre]
Maintainer: Paolo Di Lorenzo <paolo@dilorenzo.pl>

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Package rstanarm updated to version 2.15.3 with previous version 2.15.2 dated 2017-04-19

Title: Bayesian Applied Regression Modeling via Stan
Description: Estimates previously compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. Users specify models via the customary R syntax with a formula and data.frame plus some additional arguments for priors.
Author: Jonah Gabry [aut], Imad Ali [ctb], Trustees of Columbia University [cph], R Core Deveopment Team [cph] (R/stan_aov.R), Douglas Bates [cph] (R/pp_data.R), Martin Maechler [cph] (R/pp_data.R), Ben Bolker [cph] (R/pp_data.R), Steve Walker [cph] (R/pp_data.R), Brian Ripley [cph] (R/stan_aov.R, R/stan_polr.R), William Venables [cph] (R/stan_polr.R), Ben Goodrich [cre, aut]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

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Package radiant.multivariate updated to version 0.8.0 with previous version 0.6.0 dated 2016-09-16

Title: Multivariate Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Multivariate menu includes interfaces for perceptual mapping, factor analysis, cluster analysis, and conjoint analysis. The application extends the functionality in radiant.data.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>

Diff between radiant.multivariate versions 0.6.0 dated 2016-09-16 and 0.8.0 dated 2017-04-29

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Package PBD updated to version 1.3 with previous version 1.2 dated 2016-03-04

Title: Protracted Birth-Death Model of Diversification
Description: Conducts maximum likelihood analysis and simulation of the protracted birth-death model of diversification. See Etienne, R.S. & J. Rosindell 2012 <doi:10.1093/sysbio/syr091>; Lambert, A., H. Morlon & R.S. Etienne 2014, <doi:10.1007/s00285-014-0767-x>; Etienne, R.S., H. Morlon & A. Lambert 2014, <doi:10.1111/evo.12433>.
Author: Rampal S. Etienne
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>

Diff between PBD versions 1.2 dated 2016-03-04 and 1.3 dated 2017-04-29

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New package mockr with initial version 0.1
Package: mockr
Title: Mocking in R
Version: 0.1
Authors@R: person("Kirill", "Müller", role = c("aut", "cre"), email = "krlmlr+r@mailbox.org")
Description: Provides a means to mock a package function, i.e., temporarily substitute it for testing. Designed as a drop-in replacement for 'testthat::with_mock()', which may break in R 3.4.0 and later.
Imports: lazyeval
Suggests: testthat, covr
License: GPL-3
Encoding: UTF-8
LazyData: true
Date: 2017-04-28
BugReports: https://github.com/krlmlr/mockr/issues
URL: https://github.com/krlmlr/mockr, http://krlmlr.github.io/mockr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-29 08:10:46 UTC; muelleki
Author: Kirill Müller [aut, cre]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Repository: CRAN
Date/Publication: 2017-04-29 13:18:38 UTC

More information about mockr at CRAN
Permanent link

Package FSelectorRcpp updated to version 0.1.3 with previous version 0.1.2 dated 2017-03-12

Title: 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature Selection Algorithms with a Sparse Matrix Support
Description: 'Rcpp' (free of 'Java'/'Weka') implementation of 'FSelector' entropy-based feature selection algorithms with a sparse matrix support. It is also equipped with a parallel backend.
Author: Zygmunt Zawadzki [aut, cre], Marcin Kosinski [aut], Krzysztof Slomczynski [ctb]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>

Diff between FSelectorRcpp versions 0.1.2 dated 2017-03-12 and 0.1.3 dated 2017-04-29

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Package FSA updated to version 0.8.13 with previous version 0.8.12 dated 2017-03-12

Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods. Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>

Diff between FSA versions 0.8.12 dated 2017-03-12 and 0.8.13 dated 2017-04-29

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Package dataseries updated to version 0.2.0 with previous version 0.1.0 dated 2017-02-17

Title: Switzerland's Data Series in One Place
Description: Download and import time series from <http://www.dataseries.org>, a comprehensive and up-to-date collection of open data from Switzerland.
Author: Christoph Sax
Maintainer: Christoph Sax <christoph.sax@gmail.com>

Diff between dataseries versions 0.1.0 dated 2017-02-17 and 0.2.0 dated 2017-04-29

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Package antiword updated to version 1.1 with previous version 1.0 dated 2017-04-22

Title: Extract Text from Microsoft Word Documents
Description: Wraps the 'AntiWord' utility to extract text from Microsoft Word documents. The utility only supports the old 'doc' format, not the new xml based 'docx' format. Use the 'xml2' package to read the latter.
Author: Jeroen Ooms [aut, cre], Adri van Os [cph] (Author 'antiword' utility)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

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Fri, 28 Apr 2017

Package webutils updated to version 0.5 with previous version 0.4 dated 2015-10-27

Title: Utility Functions for Developing Web Applications
Description: High performance in-memory http request parser for application/json, multipart/form-data, and application/x-www-form-urlencoded requests. Includes live demo of hosting and parsing multipart forms with either 'httpuv' or 'rhttpd'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

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Package radiant.model updated to version 0.8.0 with previous version 0.6.0 dated 2016-09-18

Title: Model Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Model menu includes interfaces for linear and logistic regression, Neural Networks, model evaluation, decision analysis, and simulation. The application extends the functionality in radiant.data.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>

Diff between radiant.model versions 0.6.0 dated 2016-09-18 and 0.8.0 dated 2017-04-28

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New package permDep with initial version 1.0-0
Package: permDep
Type: Package
Title: Permutation Tests for General Dependent Truncation
Version: 1.0-0
Date: 2017-04-27
Author: Sy Han (Steven) Chiou
Maintainer: Sy Han (Steven) Chiou <schiou@hsph.harvard.edu>
Description: Implementations of permutation approach to hypothesis testing for quasi-independence of truncation time and failure time. The implemented approaches are powerful against non-monotone alternatives and thereby offer protection against erroneous assumptions of quasi-independence. The proposed tests use either a conditional or an unconditional method to evaluate the permutation p-value. The conditional method was first developed in Tsai (1980) <doi:10.2307/2336059> and Efron and Petrosian (1992) <doi:10.1086/171931>. The unconditional method provides a valid approximation to the conditional method, yet computationally simpler and does not hold fixed the size of each risk sets. Users also have an option to carry out the proposed permutation tests in a parallel computing fashion.
License: GPL (>= 3)
LazyLoad: yes
Imports: survival, goft, parallel, BB
Packaged: 2017-04-28 15:00:00 UTC; steven
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2017-04-28 23:27:10 UTC

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New package PerMallows with initial version 1.13
Package: PerMallows
Type: Package
Title: Permutations and Mallows Distributions
Version: 1.13
Date: 2017-04-28
Author: Ekhine Irurozki <ekhine.irurozqui@ehu.eus>, Borja Calvo <borja.calvo@ehu.eus>, Jose A. Lozano <ja.lozano@ehu.eus>
Maintainer: Ekhine Irurozki <ekhine.irurozqui@ehu.eus>
Description: Includes functions to work with the Mallows and Generalized Mallows Models. The considered distances are Kendall's-tau, Cayley, Hamming and Ulam and it includes functions for making inference, sampling and learning such distributions, some of which are novel in the literature. As a by-product, PerMallows also includes operations for permutations, paying special attention to those related with the Kendall's-tau, Cayley, Ulam and Hamming distances. It is also possible to generate random permutations at a given distance, or with a given number of inversions, or cycles, or fixed points or even with a given length on LIS (longest increasing subsequence).
License: GPL (>= 2)
Depends: Rcpp (>= 0.10.3)
Imports: utils
LinkingTo: Rcpp
RoxygenNote: 6.0.1
NeedsCompilation: yes
Packaged: 2017-04-28 19:46:08 UTC; ekhine
Repository: CRAN
Date/Publication: 2017-04-28 23:19:26 UTC

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New package casebase with initial version 0.1.0
Package: casebase
Type: Package
Title: Fitting Flexible Smooth-in-Time Hazards and Risk Functions via Logistic and Multinomial Regression
Version: 0.1.0
Date: 2017-4-28
Authors@R: c( person("Sahir", "Bhatnagar", email = "sahir.bhatnagar@gmail.com", role = c("aut", "cre"), comment = "http://sahirbhatnagar.com/"), person("Maxime", "Turgeon", email = "maxime.turgeon@mail.mcgill.ca", role = c("aut"), comment = "http://turgeonmaxime.github.io/"), person("Olli", "Saarela", email = "olli.saarela@utoronto.ca", role = c("aut"), comment = "http://individual.utoronto.ca/osaarela/"), person("James", "Hanley", email = "james.hanley@mcgill.ca", role = c("aut"), comment = "http://www.medicine.mcgill.ca/epidemiology/hanley/") )
Description: Implements the case-base sampling approach of Hanley and Miettinen (2009) <DOI:10.2202/1557-4679.1125>, Saarela and Arjas (2015) <DOI:10.1111/sjos.12125>, and Saarela (2015) <DOI:10.1007/s10985-015-9352-x>, for fitting flexible hazard regression models to survival data with single event type or multiple competing causes via logistic and multinomial regression. From the fitted hazard function, cumulative incidence, risk functions of time, treatment and profile can be derived. This approach accommodates any log-linear hazard function of prognostic time, treatment, and covariates, and readily allows for non-proportionality. We also provide a plot method for visualizing incidence density via population time plots.
Depends: R (>= 3.3.1)
Imports: data.table, ggplot2, methods, survival, VGAM
License: MIT + file LICENSE
LazyData: TRUE
Suggests: eha, knitr, rmarkdown, splines, testthat
VignetteBuilder: knitr
URL: http://sahirbhatnagar.com/casebase/
BugReports: https://github.com/sahirbhatnagar/casebase/issues
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-28 19:29:44 UTC; sahir
Author: Sahir Bhatnagar [aut, cre] (http://sahirbhatnagar.com/), Maxime Turgeon [aut] (http://turgeonmaxime.github.io/), Olli Saarela [aut] (http://individual.utoronto.ca/osaarela/), James Hanley [aut] (http://www.medicine.mcgill.ca/epidemiology/hanley/)
Maintainer: Sahir Bhatnagar <sahir.bhatnagar@gmail.com>
Repository: CRAN
Date/Publication: 2017-04-28 23:27:54 UTC

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New package aws.s3 with initial version 0.3.1
Package: aws.s3
Type: Package
Title: AWS S3 Client Package
Version: 0.3.1
Date: 2017-04-28
Authors@R: c(person("Thomas J.", "Leeper", role = c("aut", "cre"), email = "thosjleeper@gmail.com"), person("Boettiger", "Carl", role = "ctb"), person("Andrew", "Martin", role = "ctb"), person("Mark", "Thompson", role = "ctb"), person("Tyler", "Hunt", role = "ctb"), person("Steven", "Akins", role = "ctb"), person("Bao", "Nguyen", role = "ctb"), person("Thierry", "Onkelinx", role = "ctb"))
Description: A simple client package for the Amazon Web Services (AWS) Simple Storage Service (S3) REST API <https://aws.amazon.com/s3/>.
License: GPL (>= 2)
URL: https://github.com/cloudyr/aws.s3
BugReports: https://github.com/cloudyr/aws.s3/issues
Imports: utils, tools, httr, xml2 (> 1.0.0), base64enc, digest, aws.signature (>= 0.2.6)
Suggests: testthat, datasets
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-28 13:51:47 UTC; THOMAS
Author: Thomas J. Leeper [aut, cre], Boettiger Carl [ctb], Andrew Martin [ctb], Mark Thompson [ctb], Tyler Hunt [ctb], Steven Akins [ctb], Bao Nguyen [ctb], Thierry Onkelinx [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Repository: CRAN
Date/Publication: 2017-04-28 23:33:07 UTC

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Package aRxiv updated to version 0.5.16 with previous version 0.5.15 dated 2017-04-05

Title: Interface to the arXiv API
Description: An interface to the API for 'arXiv' (<https://arxiv.org>), a repository of electronic preprints for computer science, mathematics, physics, quantitative biology, quantitative finance, and statistics.
Author: Karthik Ram [aut], Karl Broman [aut, cre]
Maintainer: Karl Broman <kbroman@biostat.wisc.edu>

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Package WikidataQueryServiceR updated to version 0.1.1 with previous version 0.1.0 dated 2017-01-17

Title: API Client Library for 'Wikidata Query Service'
Description: An API client for the 'Wikidata Query Service' <https://query.wikidata.org/>.
Author: Mikhail Popov [aut, cre] (@bearloga on Twitter), Wikimedia Foundation [cph]
Maintainer: Mikhail Popov <mikhail@wikimedia.org>

Diff between WikidataQueryServiceR versions 0.1.0 dated 2017-01-17 and 0.1.1 dated 2017-04-28

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Package waterData updated to version 1.0.8 with previous version 1.0.7 dated 2017-04-21

Title: Retrieval, Analysis, and Anomaly Calculation of Daily Hydrologic Time Series Data
Description: Imports U.S. Geological Survey (USGS) daily hydrologic data from USGS web services (see <https://waterservices.usgs.gov/> for more information), plots the data, addresses some common data problems, and calculates and plots anomalies.
Author: Karen R. Ryberg and Aldo V. Vecchia
Maintainer: Karen R. Ryberg <kryberg@usgs.gov>

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Package surveillance updated to version 1.13.1 with previous version 1.13.0 dated 2016-12-20

Title: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
Description: Statistical methods for the modeling and monitoring of time series of counts, proportions and categorical data, as well as for the modeling of continuous-time point processes of epidemic phenomena. The monitoring methods focus on aberration detection in count data time series from public health surveillance of communicable diseases, but applications could just as well originate from environmetrics, reliability engineering, econometrics, or social sciences. The package implements many typical outbreak detection procedures such as the (improved) Farrington algorithm, or the negative binomial GLR-CUSUM method of Hhle and Paul (2008) <doi:10.1016/j.csda.2008.02.015>. A novel CUSUM approach combining logistic and multinomial logistic modeling is also included. The package contains several real-world data sets, the ability to simulate outbreak data, and to visualize the results of the monitoring in a temporal, spatial or spatio-temporal fashion. A recent overview of the available monitoring procedures is given by Salmon et al. (2016) <doi:10.18637/jss.v070.i10>. For the retrospective analysis of epidemic spread, the package provides three endemic-epidemic modeling frameworks with tools for visualization, likelihood inference, and simulation. 'hhh4' estimates models for (multivariate) count time series following Paul and Held (2011) <doi:10.1002/sim.4177> and Meyer and Held (2014) <doi:10.1214/14-AOAS743>. 'twinSIR' models the susceptible-infectious-recovered (SIR) event history of a fixed population, e.g, epidemics across farms or networks, as a multivariate point process as proposed by Hhle (2009) <doi:10.1002/bimj.200900050>. 'twinstim' estimates self-exciting point process models for a spatio-temporal point pattern of infective events, e.g., time-stamped geo-referenced surveillance data, as proposed by Meyer et al. (2012) <doi:10.1111/j.1541-0420.2011.01684.x>. A recent overview of the implemented space-time modeling frameworks for epidemic phenomena is given by Meyer et al. (2017) <doi:10.18637/jss.v077.i11>.
Author: Michael Hhle [aut, ths], Sebastian Meyer [aut, cre], Michaela Paul [aut], Leonhard Held [ctb, ths], Howard Burkom [ctb], Thais Correa [ctb], Mathias Hofmann [ctb], Christian Lang [ctb], Juliane Manitz [ctb], Andrea Riebler [ctb], Daniel Sabans Bov [ctb], Malle Salmon [ctb], Dirk Schumacher [ctb], Stefan Steiner [ctb], Mikko Virtanen [ctb], Wei Wei [ctb], Valentin Wimmer [ctb], R Core Team [ctb] (A few code segments are modified versions of code from base R)
Maintainer: Sebastian Meyer <seb.meyer@fau.de>

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Package SIBER updated to version 2.1.3 with previous version 2.1.2 dated 2017-03-15

Title: Stable Isotope Bayesian Ellipses in R
Description: Fits bi-variate ellipses to stable isotope data using Bayesian inference with the aim being to describe and compare their isotopic niche.
Author: Andrew Jackson and Andrew Parnell
Maintainer: Andrew Jackson <a.jackson@tcd.ie>

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Package pivottabler updated to version 0.2.0 with previous version 0.1.0 dated 2017-03-27

Title: Create Pivot Tables in R
Description: Create regular pivot tables with just a few lines of R. More complex pivot tables can also be created, e.g. pivot tables with irregular layouts, multiple calculations and/or derived calculations based on multiple data frames.
Author: Christopher Bailiss [aut, cre]
Maintainer: Christopher Bailiss <cbailiss@gmail.com>

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Package Matrix updated to version 1.2-10 with previous version 1.2-8 dated 2017-01-20

Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and operations on them using 'LAPACK' and 'SuiteSparse'.
Author: Douglas Bates <bates@stat.wisc.edu> and Martin Maechler
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>

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Package LinkageMapView updated to version 2.0.0 with previous version 1.0.0 dated 2017-02-05

Title: Plot Linkage Group Maps with Quantitative Trait Loci
Description: Produces high resolution, publication ready linkage maps and quantitative trait loci maps. Input can be output from 'R/qtl', simple text or comma delimited files. Output is currently a portable document file.
Author: Lisa Ouellette [aut, cre]
Maintainer: Lisa Ouellette <louellet@uncc.edu>

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Package homomorpheR updated to version 0.2-1 with previous version 0.1-1 dated 2015-11-12

Title: Homomorphic Computations in R
Description: Homomorphic computations in R for privacy-preserving applications. Currently only the Paillier Scheme is implemented.
Author: Balasubramanian Narasimhan [aut, cre]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>

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Package GGIR updated to version 1.5-3 with previous version 1.5-1 dated 2017-04-23

Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors. The package has been developed and tested for binary data from GENEActiv and GENEA devices, .csv-export data from Actigraph devices, and .cwa and .wav-format data from Axivity. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre], Zhou Fang [ctb], Jing Hua Zhao [ctb], Joe Heywood [ctb], Evgeny Mirkes [ctb], Severine Sabia [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>

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Package ConsRank updated to version 2.0.1 with previous version 2.0.0 dated 2017-04-09

Title: Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach
Description: Compute the median ranking according to the Kemeny's axiomatic approach. Rankings can or cannot contain ties, rankings can be both complete or incomplete. The package contains both branch-and-bound algorithms and heuristic solutions recently proposed. The package also provide some useful utilities for deal with preference rankings. Essential references: Emond, E.J., and Mason, D.W. (2002) <doi:10.1002/mcda.313>; D'Ambrosio, A., Amodio, S., and Iorio, C. (2015) <doi:10.1285/i20705948v8n2p198>; Amodio, S., D'Ambrosio, A., and Siciliano R. (2016) <doi:10.1016/j.ejor.2015.08.048>; D'Ambrosio, A., Mazzeo, G., Iorio, C., and Siciliano, R. (2017) <doi:10.1016/j.cor.2017.01.017>.
Author: Antonio D'Ambrosio <antdambr@unina.it>, Sonia Amodio <sonia.amodio@unina.it>, Giulio Mazzeo <giuliomazzeo@gmail.com>
Maintainer: Antonio D'Ambrosio <antdambr@unina.it>

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Package BDgraph updated to version 2.36 with previous version 2.35 dated 2017-04-15

Title: Bayesian Structure Learning in Graphical Models using Birth-Death MCMC
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models with both continuous and discrete variables. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889> and Mohammadi et al. (2017) <doi:10.1111/rssc.12171>.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>

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Package aniDom updated to version 0.1.1 with previous version 0.1 dated 2017-02-09

Title: Inferring Dominance Hierarchies and Estimating Uncertainty
Description: Provides: (1) Tools to infer dominance hierarchies based on calculating Elo scores, but with custom functions to improve estimates in animals with relatively stable dominance ranks. (2) Tools to plot the shape of the dominance hierarchy and estimate the uncertainty of a given data set.
Author: Damien R. Farine and Alfredo Sanchez-Tojar
Maintainer: Damien R. Farine <dfarine@orn.mpg.de>

Diff between aniDom versions 0.1 dated 2017-02-09 and 0.1.1 dated 2017-04-28

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Package aws.signature updated to version 0.2.9 with previous version 0.2.6 dated 2016-12-07

Title: Amazon Web Services Request Signatures
Description: Generates request signatures for Amazon Web Services (AWS) APIs.
Author: Thomas J. Leeper [aut, cre]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>

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Package rio updated to version 0.5.0 with previous version 0.4.16 dated 2016-09-25

Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that the user is probably willing to make: 'import()' and 'export()' determine the data structure from the file extension, reasonable defaults are used for data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is natively supported (including from SSL/HTTPS), compressed files can be read directly without explicit decompression, and fast import packages are used where appropriate. An additional convenience function, 'convert()', provides a simple method for converting between file types.
Author: Jason Becker [ctb], Chung-hong Chan [aut], Geoffrey CH Chan [ctb], Thomas J. Leeper [aut, cre], Christopher Gandrud [ctb], Andrew MacDonald [ctb], Ista Zahn [ctb], Stanislaus Stadlmann [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>

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Package oceanmap updated to version 0.0.6 with previous version 0.0.5 dated 2017-04-11

Title: A Plotting Toolbox for 2D Oceanographic Data
Description: Plotting toolbox for 2D oceanographic data (satellite data, sst, chla, ocean fronts & bathymetry). Recognized classes and formats include ncdf4, Raster, '.nc' and '.gz' files.
Author: Robert K. Bauer
Maintainer: Robert K. Bauer <robert.bauer@ird.fr>

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New package gsrsb with initial version 1.0.3
Package: gsrsb
Type: Package
Title: Group Sequential Refined Secondary Boundary
Version: 1.0.3
Date: 2017-04-21
Author: Jiangtao Gou and Fengqing (Zoe) Zhang
Maintainer: Jiangtao Gou <jiangtao.gou@hunter.cuny.edu>
Description: A gate-keeping procedure to test a primary and a secondary endpoint in a group sequential design with multiple interim looks. Computations related to group sequential primary and secondary boundaries. Refined secondary boundaries are calculated for a gate-keeping test on a primary and a secondary endpoint in a group sequential design with multiple interim looks. The choices include both the standard boundaries and the boundaries using error spending functions. Version 1.0.0 was released on April 12, 2017. See Tamhane et al. (2017+) "A gatekeeping procedure to test a primary and a secondary endpoint in a group sequential design with multiple interim looks", Biometrics, to appear.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Imports: stats, mvtnorm, ldbounds, xtable
NeedsCompilation: no
Packaged: 2017-04-21 17:49:49 UTC; jiangtaogou
Repository: CRAN
Date/Publication: 2017-04-28 13:32:14 UTC

More information about gsrsb at CRAN
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Package gcmr updated to version 1.0.0 with previous version 0.7.5 dated 2015-06-02

Title: Gaussian Copula Marginal Regression
Description: Likelihood inference in Gaussian copula marginal regression models.
Author: Guido Masarotto and Cristiano Varin
Maintainer: Cristiano Varin <sammy@unive.it>

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Package excerptr updated to version 1.0.1 with previous version 1.0.0 dated 2017-04-25

Title: Excerpt Structuring Comments from Your Code File and Set a Table of Contents
Description: This is an R interface to the python package 'excerpts' (<https://pypi.python.org/pypi/excerpts>).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <adc-r@arcor.de>

Diff between excerptr versions 1.0.0 dated 2017-04-25 and 1.0.1 dated 2017-04-28

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Package cts updated to version 1.0-21 with previous version 1.0-20 dated 2015-10-27

Title: Continuous Time Autoregressive Models
Description: Functions to fit continuous time autoregressive models with the Kalman filter.
Author: Fortran original by G. Tunnicliffe-Wilson and Zhu Wang, R port by Zhu Wang with contribution from John Nash, Netlib and NAG authors
Maintainer: Zhu Wang <zwang@connecticutchildrens.org>

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Package TSdist updated to version 3.4 with previous version 3.3 dated 2016-05-14

Title: Distance Measures for Time Series Data
Description: A set of commonly used distance measures and some additional functions which, although initially not designed for this purpose, can be used to measure the dissimilarity between time series. These measures can be used to perform clustering, classification or other data mining tasks which require the definition of a distance measure between time series.
Author: Usue Mori, Alexander Mendiburu, J.A. Lozano
Maintainer: Usue Mori <usue.mori@ehu.eus>

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Package ropenaq updated to version 0.2.0 with previous version 0.1.4 dated 2017-04-11

Title: Accesses Air Quality Data from the Open Data Platform OpenAQ
Description: Allows access to air quality data from the API of the OpenAQ platform <https://docs.openaq.org/>, with the different services the API offers (getting measurements for a given query, getting latest measurements, getting lists of available countries/cities/locations).
Author: Maëlle Salmon [aut, cre], Andrew MacDonald [ctb] (Andrew MacDonald reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/24), Andy Teucher [ctb] (Andy Teucher reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/24), Mikayla Murphy [ctb]
Maintainer: Maëlle Salmon <maelle.salmon@yahoo.se>

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Package roahd updated to version 1.3 with previous version 1.2 dated 2016-07-06

Title: Robust Analysis of High Dimensional Data
Description: A collection of methods for the robust analysis of univariate and multivariate functional data, possibly in high-dimensional cases, and hence with attention to computational efficiency and simplicity of use.
Author: Nicholas Tarabelloni [aut, cre], Ana Arribas-Gil [aut], Francesca Ieva [aut], Anna Maria Paganoni [aut], Juan Romo [aut]
Maintainer: Nicholas Tarabelloni <nicholas.tarabelloni@polimi.it>

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Package orsk updated to version 1.0-3 with previous version 1.0-2 dated 2015-10-27

Title: Converting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information
Description: Convert the Odds Ratio to the Relative Risk in Cohort Studies with Partial Data Information.
Author: Zhu Wang
Maintainer: Zhu Wang <zwang@connecticutchildrens.org>

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Package glmmLasso updated to version 1.5.0 with previous version 1.4.4 dated 2016-05-27

Title: Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation
Description: A variable selection approach for generalized linear mixed models by L1-penalized estimation is provided.
Author: Andreas Groll
Maintainer: Andreas Groll <groll@mathematik.uni-muenchen.de>

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Package sitmo updated to version 1.1.0 with previous version 1.0.0 dated 2016-03-19

Title: Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Description: Provided within is a high quality and fast PPRNG that is able to be used in an 'OpenMP' parallel environment compiled under either C++98 or C++11. The objective of this package release is to consolidate the distribution of the 'sitmo' library on CRAN by enabling others to link to the 'sitmo' header file instead of including a copy of 'sitmo' within their individual package. Lastly, the package contains example implementations using 'sitmo' and three accompanying vignette that provide additional information.
Author: James Balamuta [aut, cre], Thijs van den Berg [aut, cph]
Maintainer: James Balamuta <balamut2@illinois.edu>

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Package shinymaterial updated to version 0.2.0 with previous version 0.1.0 dated 2017-04-15

Title: Implement Material Design in Shiny Applications
Description: Allows shiny developers to incorporate UI elements based on Google's Material design. See <https://material.io/guidelines/> for more information.
Author: Eric Anderson [aut, cre], Alvin Wang [ctb, cph] (Materialize CSS library), Alan Chang [ctb, cph] (Materialize CSS library), Alex Mark [ctb, cph] (Materialize CSS library), Kevin Louie [ctb, cph] (Materialize CSS library)
Maintainer: Eric Anderson <eric.ray.anderson@gmail.com>

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Package rcrossref updated to version 0.7.0 with previous version 0.6.0 dated 2016-11-09

Title: Client for Various 'CrossRef' 'APIs'
Description: Client for various 'CrossRef' 'APIs', including 'metadata' search with their old and newer search 'APIs', get 'citations' in various formats (including 'bibtex', 'citeproc-json', 'rdf-xml', etc.), convert 'DOIs' to 'PMIDs', and 'vice versa', get citations for 'DOIs', and get links to full text of articles when available.
Author: Scott Chamberlain [aut, cre], Carl Boettiger [aut], Ted Hart [aut], Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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Package jmv updated to version 0.7.3.0 with previous version 0.7.0.6 dated 2017-03-13

Title: The 'jamovi' Analyses
Description: 'jamovi' is a rich graphical statistics program providing many common statistical tests such as t-tests, ANOVAs, correlation matrices, proportion tests, contingency tables, etc (see <https://www.jamovi.org> for more information). This package makes all of the basic 'jamovi' analyses available to the R user.
Author: Ravi Selker, Jonathon Love, Damian Dropmann
Maintainer: Jonathon Love <jon@thon.cc>

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Package htmltools updated to version 0.3.6 with previous version 0.3.5 dated 2016-03-21

Title: Tools for HTML
Description: Tools for HTML generation and output.
Author: RStudio, Inc.
Maintainer: Joe Cheng <joe@rstudio.com>

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Package flexmix updated to version 2.3-14 with previous version 2.3-13 dated 2015-01-17

Title: Flexible Mixture Modeling
Description: A general framework for finite mixtures of regression models using the EM algorithm is implemented. The package provides the E-step and all data handling, while the M-step can be supplied by the user to easily define new models. Existing drivers implement mixtures of standard linear models, generalized linear models and model-based clustering.
Author: Bettina Gruen [aut, cre], Friedrich Leisch [aut], Deepayan Sarkar [ctb], Frederic Mortier [ctb], Nicolas Picard [ctb]
Maintainer: Bettina Gruen <Bettina.Gruen@jku.at>

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Package flacco updated to version 1.5 with previous version 1.4 dated 2017-02-27

Title: Feature-Based Landscape Analysis of Continuous and Constraint Optimization Problems
Description: Contains tools and features, which can be used for an Exploratory Landscape Analysis (ELA) of single-objective continuous optimization problems. Those features are able to quantify rather complex properties, such as the global structure, separability, etc., of the optimization problems.
Author: Pascal Kerschke [aut, cre], Christian Hanster [ctb], Jan Dagefoerde [ctb]
Maintainer: Pascal Kerschke <kerschke@uni-muenster.de>

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Package fetchR updated to version 2.1-0 with previous version 2.0-0 dated 2017-03-16

Title: Calculate Wind Fetch
Description: Wind fetch is the unobstructed length of water over which wind can blow from a certain direction. The wind fetch is typically calculated for many directions around the compass rose for a given location, which can then be incorporated into a larger model (such as the InVEST coastal vulnerability model; <http://data.naturalcapitalproject.org/invest-releases/documentation/2_2_0/coastal_vulnerability.html>), or simply averaged for a reasonable measure of the overall wind exposure for a specific marine location. The process of calculating wind fetch can be extremely time-consuming and tedious, particularly if a large number of fetch vectors are required at many locations. The 'fetchR' package calculates wind fetch and summarises the information efficiently. There are also plot methods to help visualise the wind exposure at the various locations, and methods to output the fetch vectors to a KML file for further investigation.
Author: Blake Seers [aut, cre]
Maintainer: Blake Seers <blake.seers@gmail.com>

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Package EMCluster updated to version 0.2-7 with previous version 0.2-6 dated 2016-12-17

Title: EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution
Description: EM algorithms and several efficient initialization methods for model-based clustering of finite mixture Gaussian distribution with unstructured dispersion in both of unsupervised and semi-supervised learning.
Author: Wei-Chen Chen [aut, cre], Ranjan Maitra [aut], Volodymyr Melnykov [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

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Package discretecdAlgorithm updated to version 0.0.4 with previous version 0.0.3 dated 2017-03-12

Title: Coordinate-Descent Algorithm for Discrete Data
Description: Structure learning of Bayesian network using coordinate-descent algorithm. This algorithm is designed for discrete network assuming a multinomial data set, and we use a multi-logit model to do the regression. The algorithm is described in Gu, Fu and Zhou (2016) <http://arxiv.org/abs/1403.2310>.
Author: Jiaying Gu [aut, cre]
Maintainer: Jiaying Gu <gujy.lola@gmail.com>

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Thu, 27 Apr 2017

Package visualize updated to version 4.3.0 with previous version 4.2 dated 2013-08-03

Title: Graph Probability Distributions with User Supplied Parameters and Statistics
Description: Graphs the pdf or pmf and highlights what area or probability is present in user defined locations. Visualize is able to provide lower tail, bounded, upper tail, and two tail calculations. Supports strict and equal to inequalities. Also provided on the graph is the mean and variance of the distribution.
Author: James Balamuta [aut, cph, cre]
Maintainer: James Balamuta <james.balamuta@gmail.com>

Diff between visualize versions 4.2 dated 2013-08-03 and 4.3.0 dated 2017-04-27

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Package radiant.design updated to version 0.8.0 with previous version 0.6.0 dated 2016-09-14

Title: Design Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Design menu includes interfaces for design of experiments, sampling, and sample size calculation. The application extends the functionality in radiant.data.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>

Diff between radiant.design versions 0.6.0 dated 2016-09-14 and 0.8.0 dated 2017-04-27

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 LICENSE                                            |    4 -
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 NAMESPACE                                          |    1 
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More information about radiant.design at CRAN
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Package radiant.basics updated to version 0.8.0 with previous version 0.6.0 dated 2016-09-14

Title: Basics Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Basics menu includes interfaces for probability calculation, central limit theorem simulation, comparing means and proportions, goodness-of-fit testing, cross-tabs, and correlation. The application extends the functionality in radiant.data.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>

Diff between radiant.basics versions 0.6.0 dated 2016-09-14 and 0.8.0 dated 2017-04-27

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Package mvabund updated to version 3.12.3 with previous version 3.12 dated 2017-01-25

Title: Statistical Methods for Analysing Multivariate Abundance Data
Description: A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See 'mvabund-package.Rd' for details of overall package organization. The package is implemented with the Gnu Scientific Library (http://www.gnu.org/software/gsl/) and Rcpp (http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Author: Yi Wang, Ulrike Naumann, Stephen Wright, Dirk Eddelbuettel and David Warton
Maintainer: David Warton <David.Warton@unsw.edu.au>

Diff between mvabund versions 3.12 dated 2017-01-25 and 3.12.3 dated 2017-04-27

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Package distcomp updated to version 1.0 with previous version 0.25.6 dated 2017-02-23

Title: Computations over Distributed Data without Aggregation
Description: Implementing algorithms and fitting models when sites (possibly remote) share computation summaries rather than actual data over HTTP with a master R process (using 'opencpu', for example). A stratified Cox model and a singular value decomposition are provided. The former makes direct use of code from the R 'survival' package. (That is, the underlying Cox model code is derived from that in the R 'survival' package.) Sites may provide data via several means: CSV files, Redcap API, etc. An extensible design allows for new methods to be added in the future. Web applications are provided (via 'shiny') for the implemented methods to help in designing and deploying the computations.
Author: Balasubramanian Narasimhan [aut, cre], Marina Bendersky [aut], Sam Gross [aut], Terry M. Therneau [ctb], Thomas Lumley [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>

Diff between distcomp versions 0.25.6 dated 2017-02-23 and 1.0 dated 2017-04-27

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Package d3r updated to version 0.6.4 with previous version 0.6.3 dated 2017-04-18

Title: 'd3.js' Utilities for R
Description: Helper functions for using 'd3.js' in R.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib, http://d3js.org), Kent Russell [aut, cre] (R interface)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>

Diff between d3r versions 0.6.3 dated 2017-04-18 and 0.6.4 dated 2017-04-27

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Package kdevine updated to version 0.4.0 with previous version 0.3.0 dated 2017-01-14

Title: Multivariate Kernel Density Estimation with Vine Copulas
Description: Implements the vine copula based kernel density estimator of Nagler and Czado (2016) <doi:10.1016/j.jmva.2016.07.003>. The estimator does not suffer from the curse of dimensionality and is therefore well suited for high-dimensional applications.
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <thomas.nagler@tum.de>

Diff between kdevine versions 0.3.0 dated 2017-01-14 and 0.4.0 dated 2017-04-27

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Package Rlda updated to version 0.1.1 with previous version 0.1.0 dated 2017-03-16

Title: Bayesian LDA for Mixed-Membership Clustering Analysis
Description: Estimates the Bayesian LDA model for mixed-membership clustering based on different types of data (i.e., Multinomial, Bernoulli, and Binomial entries).
Author: Pedro Albuquerque and Denis Valle and Daijiang Li
Maintainer: Pedro Albuquerque <pedroa@unb.br>

Diff between Rlda versions 0.1.0 dated 2017-03-16 and 0.1.1 dated 2017-04-27

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