Author: Roeland Kindt
Title: GUI for biodiversity and community ecology analysis
Description: This package provides a GUI (Graphical User Interface, via
the R-Commander) and some utility functions (often based on the
vegan package) for statistical analysis of biodiversity and
ecological communities, including species accumulation curves,
diversity indices, Renyi profiles, GLMs for analysis of species
abundance and presence-absence, distance matrices, Mantel
tests, and cluster, constrained and unconstrained ordination
analysis. A book on biodiversity and community ecology analysis
is available for free download from the website.
Diff between BiodiversityR versions 1.2 dated 2008-05-13 and 1.3 dated 2009-07-03
DESCRIPTION | 40 ++++++++++----- R/caprescale.R | 109 ++++++++++++++++++++++--------------------- R/diversityresult.R | 1 inst/etc/BiodiversityGUI.R | 80 +++++++++++++++---------------- man/BiodiversityR-package.Rd | 8 +-- man/BiodiversityRGUI.Rd | 2 man/caprescale.Rd | 11 ++-- man/diversityresult.Rd | 2 man/rankabundance.Rd | 2 9 files changed, 138 insertions(+), 117 deletions(-)
More information about BiodiversityR at CRAN
Path: /cran/updated | permanent link
Author: Philippe Grosjean
Diff between tcltk2 versions 1.0-9 dated 2009-06-28 and 1.1-0 dated 2009-07-03
More information about tcltk2 at CRAN
Title: Tcl/Tk Additions
Description: A series of additional Tcl commands and Tk widgets with
style and various functions (under Windows: DDE exchange,
access to the registry and icon manipulation) to supplement the
tcltk package.
tcltk2-1.0-9/tcltk2/R/zzz.R |only
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tcltk2-1.0-9/tcltk2/inst/tklibs/bwidget1.7 |only
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tcltk2-1.0-9/tcltk2/inst/tklibs/cursor0.1 |only
tcltk2-1.0-9/tcltk2/inst/tklibs/toolbar1.0 |only
tcltk2-1.1-0/tcltk2/DESCRIPTION | 16
tcltk2-1.1-0/tcltk2/NAMESPACE | 16
tcltk2-1.1-0/tcltk2/NEWS | 23 +
tcltk2-1.1-0/tcltk2/R/tclTask.R |only
tcltk2-1.1-0/tcltk2/R/tcltk2-Internal.R |only
tcltk2-1.1-0/tcltk2/R/tk2commands.R | 141 +------
tcltk2-1.1-0/tcltk2/R/tk2ico.R | 95 ++---
tcltk2-1.1-0/tcltk2/R/tk2tip.R | 9
tcltk2-1.1-0/tcltk2/R/tk2widgets.R | 329 ++++++------------
tcltk2-1.1-0/tcltk2/cleanup.win | 11
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tcltk2-1.1-0/tcltk2/inst/tklibs/snit1.0 |only
tcltk2-1.1-0/tcltk2/inst/tklibs/swaplist0.2 |only
tcltk2-1.1-0/tcltk2/inst/tklibs/tablelist4.10 |only
tcltk2-1.1-0/tcltk2/inst/tklibs/tooltip1.4 |only
tcltk2-1.1-0/tcltk2/inst/tklibs/widget3.0 |only
tcltk2-1.1-0/tcltk2/man/setLanguage.Rd | 6
tcltk2-1.1-0/tcltk2/man/tclTask.Rd |only
tcltk2-1.1-0/tcltk2/man/tk2commands.Rd | 46 --
tcltk2-1.1-0/tcltk2/man/tk2widgets.Rd | 68 +--
tcltk2-1.1-0/tcltk2/test.R |only
tcltk2-1.1-0/tcltk2/win/tklibs/winico0.6/pkgIndex.tcl | 3
38 files changed, 292 insertions(+), 471 deletions(-)
Path: /cran/updated | permanent link
Author: S original by James J. Majure
Diff between sgeostat versions 1.0-21 dated 2007-04-11 and 1.0-22 dated 2009-07-03
More information about sgeostat at CRAN
Title: An Object-oriented Framework for Geostatistical Modeling in S+
Description: An Object-oriented Framework for Geostatistical Modeling
in S+
ChangeLog | 25 +++++++++++++++++--------
DESCRIPTION | 16 ++++++++++------
LICENSE |only
man/identify.point.Rd | 2 +-
man/plot.point.Rd | 3 ++-
man/plot.variogram.Rd | 2 +-
man/print.pair.Rd | 2 +-
man/print.point.Rd | 2 +-
8 files changed, 33 insertions(+), 19 deletions(-)
Path: /cran/updated | permanent link
Author: Steven Kembel
Diff between picante versions 0.7-0 dated 2009-05-24 and 0.7-1 dated 2009-07-03
More information about picante at CRAN
Title: R tools for integrating phylogenies and ecology
Description: Phylocom integration, community analyses, null-models,
traits and evolution in R
DESCRIPTION | 8 ++++----
R/phylodiversity.R | 34 ++++++++++++++++++++++++++++++++--
man/pd.Rd | 8 +++++---
man/picante-package.Rd | 4 ++--
man/ses.pd.Rd |only
man/utility.Rd | 5 ++++-
6 files changed, 47 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Documentation for packages distr, distrEx, distrSim, distrTEst
Description: provides documentation in form of a common vignette to
packages distr, distrEx, distrMod, distrSim, distrTEst
Diff between distrDoc versions 2.1 dated 2009-04-15 and 2.1.1 dated 2009-07-03
DESCRIPTION | 8 inst/doc/Rplots.pdf | 3924 ++++----- inst/doc/distr.Rnw | 6 inst/doc/distr.pdf |21622 ++++++++++++++++++++++++++++++++++------------------ 4 files changed, 16438 insertions(+), 9122 deletions(-)
More information about distrDoc at CRAN
Path: /cran/updated | permanent link
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Object orientated implementation of distributions
Description: Object orientated implementation of distributions
Diff between distr versions 2.1.1 dated 2009-06-17 and 2.1.3 dated 2009-07-03
distr-2.1.1/distr/inst/doc/.build.timestamp |only distr-2.1.1/distr/inst/doc/newDistributions-AbscDist.eps |only distr-2.1.1/distr/inst/doc/newDistributions-AbscDist.pdf |only distr-2.1.1/distr/inst/doc/newDistributions-DiscrDist.eps |only distr-2.1.1/distr/inst/doc/newDistributions-DiscrDist.pdf |only distr-2.1.1/distr/inst/doc/newDistributions-exam1.eps |only distr-2.1.1/distr/inst/doc/newDistributions-exam1.pdf |only distr-2.1.1/distr/inst/doc/newDistributions.tex |only distr-2.1.3/distr/DESCRIPTION | 14 +- distr-2.1.3/distr/inst/doc/Rplots.pdf | 72 +++++++------- distr-2.1.3/distr/inst/doc/newDistributions.Rnw | 10 + distr-2.1.3/distr/inst/doc/newDistributions.pdf |binary 12 files changed, 51 insertions(+), 45 deletions(-)
More information about distr at CRAN
Path: /cran/updated | permanent link
Author: Valerie Obenchain
Title: Data retrieval from a Labkey database
Description: This package imports data from a labkey database into an R
data frame
Diff between Rlabkey versions 0.0.7 dated 2009-04-01 and 0.0.8 dated 2009-07-03
Rlabkey-0.0.7/Rlabkey/license |only Rlabkey-0.0.8/Rlabkey/DESCRIPTION | 10 - Rlabkey-0.0.8/Rlabkey/LICENSE |only Rlabkey-0.0.8/Rlabkey/NEWS | 5 Rlabkey-0.0.8/Rlabkey/R/labkey.executeSql.R | 120 +++++++++---------- Rlabkey-0.0.8/Rlabkey/R/labkey.selectRows.R | 156 ++++++++++++------------- Rlabkey-0.0.8/Rlabkey/R/makeFilter.R | 97 +++++++-------- Rlabkey-0.0.8/Rlabkey/man/Rlabkey-package.Rd | 4 Rlabkey-0.0.8/Rlabkey/man/labkey.executeSql.Rd | 16 +- Rlabkey-0.0.8/Rlabkey/man/makeFilter.Rd | 4 10 files changed, 209 insertions(+), 203 deletions(-)
More information about Rlabkey at CRAN
Path: /cran/updated | permanent link
Author: Douglas Bates and Ana Ines Vazquez
Title: Pedigree-based mixed-effects models
Description: Fit pedigree-based mixed-effects models.
Diff between pedigreemm versions 0.2-2 dated 2009-06-02 and 0.2-3 dated 2009-07-02
DESCRIPTION | 8 ++++---- R/pedigree.R | 15 +++++++++++++++ 2 files changed, 19 insertions(+), 4 deletions(-)
More information about pedigreemm at CRAN
Path: /cran/updated | permanent link
Author: Markus Loecher, Sense Networks
Diff between HTMLUtils versions 0.1.2 dated 2009-06-08 and 0.1.3 dated 2009-07-02
More information about HTMLUtils at CRAN
Title: Facilitates automated HTML report creation
Description: Facilitates automated HTML report creation, in particular
framed HTML pages and dynamically sortable tables.
DESCRIPTION | 8 ++++----
R/BasicHTML.R | 21 +++++++++++++++------
R/FramedHTML.R | 38 ++++++++++++++++++++++++++++++--------
R/myHTMLInitFile.R | 15 ++++++++++++++-
man/BasicHTML.Rd | 10 ++++++----
man/FramedHTML.Rd | 13 ++++++++-----
man/HTMLUtils-package.Rd | 4 ++--
man/InstallJSC.Rd | 2 +-
man/myHTMLInitFile.Rd | 3 ++-
9 files changed, 82 insertions(+), 32 deletions(-)
Path: /cran/updated | permanent link
Author: Eva Herrmann
Diff between lokern versions 1.0-7 dated 2009-04-03 and 1.0-8 dated 2009-07-02
More information about lokern at CRAN
Title: Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth
Description: Kernel regression smoothing with adaptive local or global
plug-in bandwidth selection.
ChangeLog | 14 ++
DESCRIPTION | 8 -
R/glkerns.R | 19 ++--
demo |only
man/glkerns.Rd | 2
src/glkerns.f | 15 ++-
tests/glk1.R | 11 ++
tests/glk1.Rout.save | 242 ++++++++++++++++++++++++++++++++++++++++++++++++++-
8 files changed, 293 insertions(+), 18 deletions(-)
Path: /cran/updated | permanent link
Author: Delia Bailey
Diff between pcse versions 1.6 dated 2008-11-16 and 1.7 dated 2009-07-02
More information about pcse at CRAN
Title: Panel-Corrected Standard Error Estimation in R
Description: This package contains a function to estimate
panel-corrected standard errors. Data may contain balanced or
unbalanced panels.
DESCRIPTION | 15 ++++++++++-----
R/pcse.R | 27 +++++++++++++--------------
R/summary.pcse.R | 1 -
R/vcovPC.R |only
demo/pcse.R | 8 ++++++++
inst |only
man/pcse-package.Rd | 4 ++--
man/summary.pcse.Rd | 4 ++--
man/vcovPC.Rd |only
9 files changed, 35 insertions(+), 24 deletions(-)
Path: /cran/updated | permanent link
Author: James Honaker
Diff between Amelia versions 1.2-2 dated 2009-04-27 and 1.2-9 dated 2009-07-02
More information about Amelia at CRAN
Title: Amelia II: A Program for Missing Data
Description: Amelia II "multiply imputes" missing data in a single
cross-section (such as a survey), from a time series (like
variables collected for each year in a country), or from a
time-series-cross-sectional data set (such as collected by
years for each of several countries). Amelia II implements our
bootstrapping-based algorithm that gives essentially the same
answers as the standard IP or EMis approaches, is usually
considerably faster than existing approaches and can handle
many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but
please let us know if you find to the contrary!). The program
also generalizes existing approaches by allowing for trends in
time series across observations within a cross-sectional unit,
as well as priors that allow experts to incorporate beliefs
they have about the values of missing cells in their data.
Amelia II also includes useful diagnostics of the fit of
multiple imputation models. The program works from the R
command line or via a graphical user interface that does not
require users to know R.
Amelia-1.2-2/Amelia/inst/doc/amelia.aux |only
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Amelia-1.2-9/Amelia/R/amcheck.r | 203
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Amelia-1.2-9/Amelia/R/diag.r | 4
Amelia-1.2-9/Amelia/R/emb.r | 99
Amelia-1.2-9/Amelia/R/missmap.R | 117
Amelia-1.2-9/Amelia/R/prep.r | 38
Amelia-1.2-9/Amelia/R/summary.amelia.R | 4
Amelia-1.2-9/Amelia/R/write.amelia.R | 1
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Amelia-1.2-9/Amelia/man/missmap.Rd | 11
72 files changed, 20915 insertions(+), 4632 deletions(-)
Path: /cran/updated | permanent link
Author: Adrian Baddeley
Diff between spatstat versions 1.15-4 dated 2009-06-16 and 1.16-0 dated 2009-07-02
More information about spatstat at CRAN
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Contains
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, and pixel images. Point
process models can be fitted to point pattern data. Cluster
type models are fitted by the method of minimum contrast. Very
general Gibbs point process models can be fitted to point
pattern data using a function ppm similar to lm or glm. Models
may include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated
automatically. Also provides facilities for formal inference
(such as chi-squared tests) and model diagnostics (including
simulation envelopes, residuals, residual plots and Q-Q plots).
.Rbuildindex.5904 |only
DESCRIPTION | 10
INDEX | 10
R/Fest.S | 186 ++++++++-----
R/Gest.S | 162 ++++++-----
R/Gmulti.S | 189 ++++++++-----
R/Iest.R | 66 ++--
R/Jest.S | 77 ++++-
R/Jmulti.S | 84 ++++--
R/Kinhom.S | 18 -
R/Kmeasure.R | 223 +++++++++++-----
R/Kmulti.inhom.R | 28 +-
R/alltypes.R | 6
R/blur.R | 4
R/deldir.R | 12
R/density.ppp.R | 43 ++-
R/distbdry.S | 16 -
R/envelope.R | 28 +-
R/fv.R | 47 ++-
R/images.R | 47 +++
R/iplot.R |only
R/istat.R |only
R/plot.fasp.R | 7
R/plot.fv.R | 24 +
R/plot.ppp.S | 75 ++---
R/ripras.S | 2
R/superimpose.R | 5
R/tess.R | 32 ++
R/wingeom.S | 47 +++
demo/spatstat.R | 14 -
inst/doc/shapefiles.pdf | 659 ++++++++++++++++++++++++------------------------
man/00spatstat.Rd | 22 +
man/AreaInter.Rd | 2
man/BadGey.Rd | 8
man/Fest.Rd | 33 +-
man/Gcross.Rd | 17 +
man/Gdot.Rd | 11
man/Gest.Rd | 38 +-
man/Gmulti.Rd | 13
man/Hest.Rd | 2
man/Iest.Rd | 8
man/Jcross.Rd | 12
man/Jdot.Rd | 14 -
man/Jest.Rd | 10
man/Jmulti.Rd | 13
man/Kcross.Rd | 2
man/Kcross.inhom.Rd | 11
man/Kdot.Rd | 2
man/Kdot.inhom.Rd | 8
man/Kest.fft.Rd | 2
man/Lcross.inhom.Rd |only
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man/LennardJones.Rd | 12
man/Lest.Rd | 1
man/Linhom.Rd | 5
man/MultiStrauss.Rd | 3
man/PairPiece.Rd | 4
man/SatPiece.Rd | 3
man/Strauss.Rd | 7
man/StraussHard.Rd | 5
man/adaptive.density.Rd | 2
man/alltypes.Rd | 64 ++--
man/convexhull.Rd |only
man/convexhull.xy.Rd | 1
man/internal.Rd | 18 +
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man/localK.Rd | 2
man/markcorr.Rd | 4
man/plot.fasp.Rd | 6
man/plot.fv.Rd | 23 +
man/plot.ppp.Rd | 1
man/ppm.Rd | 8
man/qqplot.ppm.Rd | 6
tests/rmhBasic.R | 4
tests/rmhErrors.R | 2
tests/rmhMulti.R | 2
78 files changed, 1627 insertions(+), 905 deletions(-)
Path: /cran/updated | permanent link
Author: Jose L. Izquierdo
Diff between Metabonomic versions 3.2 dated 2009-07-01 and 3.2.1 dated 2009-07-02
More information about Metabonomic at CRAN
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis
(Baseline, Normalization, Peak Detection, PCA, PLS, Nearest
Neigbourgt, Neural Network) developed to make easy this data
analysis.
Metabonomic-3.2.1/Metabonomic/DESCRIPTION | 14
Metabonomic-3.2.1/Metabonomic/R/Met.Aligm.R | 36 -
Metabonomic-3.2.1/Metabonomic/R/Met.Order.R | 32 -
Metabonomic-3.2.1/Metabonomic/R/Met.PCA.R | 421 +++++++++++++------
Metabonomic-3.2.1/Metabonomic/R/Met.PLS2.R | 10
Metabonomic-3.2.1/Metabonomic/R/Met.Selection.R | 34 -
Metabonomic-3.2.1/Metabonomic/R/Met.peak.detection.R | 9
Metabonomic-3.2.1/Metabonomic/R/Met.spectrum.2.R | 67 ---
Metabonomic-3.2.1/Metabonomic/R/Metabonomic.R | 2
Metabonomic-3.2.1/Metabonomic/R/TABLE.R | 28 -
Metabonomic-3.2.1/Metabonomic/R/showData2.R | 28 -
Metabonomic-3.2/Metabonomic/R/Met.Outliers.R |only
Metabonomic-3.2/Metabonomic/man/Met.Outliers.Rd |only
13 files changed, 354 insertions(+), 327 deletions(-)
Path: /cran/updated | permanent link
Author: P. Neytchev, P. Filzmoser, R. Patnaik, A. Eisl and R. Boubela
Title: Trimmed Maximum Likelihood Estimation
Description: TLE implements a general framework for robust fitting of
finite mixture models. Parameter estimation is performed using
the EM algorithm.
Diff between tlemix versions 0.0.5 dated 2009-05-06 and 0.0.6 dated 2009-07-02
DESCRIPTION | 10 - inst/doc/tlemix-intro.pdf | 439 ++++++++++++++++++++++------------------------ 2 files changed, 219 insertions(+), 230 deletions(-)
More information about tlemix at CRAN
Path: /cran/updated | permanent link
Author: Peter Ruckdeschel
Title: Utilities for Sweave together with TeX listings package
Description: provides utilities for defining R / Rd as
Tex-package-listings "language" and including R / Rd source
file (sniplets) copied from R-forge in its most recent version
(or another url) thereby avoiding inconsistencies between
vignette and documented source code
Diff between SweaveListingUtils versions 0.2 dated 2009-04-15 and 0.3 dated 2009-07-02
DESCRIPTION | 15 ++-- R/SweaveListingOptions.R | 9 ++ R/SweaveListingUtils.R | 75 ++++++++++++++++++++++- R/keywordsStyle.R | 3 inst/MASKING | 15 +++- inst/NEWS | 24 +++++++ inst/TeX/Rdlisting.sty | 15 ++-- inst/doc/ExampleSweaveListingUtils.Rnw | 61 +++++++++++++++---- inst/doc/ExampleSweaveListingUtils.pdf |binary inst/doc/cleanup.tex |only inst/doc/preamble.tex | 2 inst/doc/preambleExp.tex | 104 +++++++++++++++++++++------------ man/0SweaveListingUtils-package.Rd | 7 +- man/SweaveListingOptions.Rd | 8 +- man/SweaveListingPreparations.Rd | 30 +++++++++ man/copySourceFromRForge.Rd | 6 - man/library.Rd | 8 ++ man/lstinputSourceFromRForge.Rd | 10 +-- man/readSourceFromRForge.Rd | 4 - 19 files changed, 306 insertions(+), 90 deletions(-)
More information about SweaveListingUtils at CRAN
Path: /cran/updated | permanent link
Author: Derek Young Tatiana Benaglia Didier Chauveau Ryan Elmore Tom
Hettmansperger David Hunter Hoben Thomas Fengjuan Xuan
Title: Tools for analyzing finite mixture models
Description: A collection of R functions for analyzing finite mixture
models. This package is based upon work supported by the
National Science Foundation under Grant No. SES-0518772.
Diff between mixtools versions 0.4.0 dated 2009-04-28 and 0.4.1 dated 2009-07-02
DESCRIPTION | 9 +++--- R/normalmixEM.R | 65 ++++++++++++++++++++++++--------------------- R/parse.constraints.R |only R/tauequivnormalmixEM.R |only R/zzz.R | 1 man/normalmixEM.Rd | 20 +++++++++++++ man/tauequivnormalmixEM.Rd |only 7 files changed, 61 insertions(+), 34 deletions(-)
More information about mixtools at CRAN
Path: /cran/updated | permanent link
More information about speff2trial at CRAN
Path: /cran/new | permanent link
Author: G. Grothendieck
Title: Utilities for strings and function arguments.
Description: gsubfn is like gsub but can take a replacement function or
certain other objects instead of the replacement string.
Matches and back references are input to the replacement
function and replaced by the function output. gsubfn can be
used to split strings based on content rather than delimiters
and for quasi-perl-style string interpolation. The package also
has facilities for translating formulas to functions and
allowing such formulas in function calls instead of functions.
This can be used with R functions such as apply, sapply,
lapply, optim, integrate, xyplot, Filter and any other function
that expects another function as an input argument or functions
like cat or sql calls that may involve strings where
substitution is desirable.
Diff between gsubfn versions 0.3-8 dated 2008-12-15 and 0.5-0 dated 2009-07-02
DESCRIPTION | 48 +- R/fn.R | 13 R/gsubfn.R | 70 ++++ inst/NEWS | 9 inst/THANKS | 1 inst/doc/Rplots.pdf | 48 +- inst/doc/gsubfn.R | 2 inst/doc/gsubfn.Rnw | 10 inst/doc/gsubfn.pdf | 856 +++++++++++++++++++++++++++------------------------- man/fn.Rd | 1 man/gsubfn.Rd | 2 man/strapply.Rd | 41 ++ 12 files changed, 628 insertions(+), 473 deletions(-)
More information about gsubfn at CRAN
Path: /cran/updated | permanent link
Author: Edzer J. Pebesma
Diff between gstat versions 0.9-60 dated 2009-05-15 and 0.9-61 dated 2009-07-02
More information about gstat at CRAN
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point
or block (co)kriging, sequential Gaussian or indicator
(co)simulation; variogram and variogram map plotting utility
functions.
DESCRIPTION | 8
INDEX | 1
NAMESPACE | 1
R/krigeTg.R |only
R/predict.gstat.R | 5
inst/ChangeLog | 131
inst/doc/gstat.pdf |29029 ++++++++++++++++++++++++++---------------------------
man/krigeTg.Rd |only
man/pcb.Rd | 2
src/data.c | 10
src/lex.c | 109
src/lex.l | 3
src/random.c | 2
src/version.h | 6
14 files changed, 14536 insertions(+), 14771 deletions(-)
Path: /cran/updated | permanent link
Author: Pierre Chausse
Diff between gmm versions 1.0-6 dated 2009-05-12 and 1.0-7 dated 2009-07-02
More information about gmm at CRAN
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Description: It is a complete suite to estimate models based on moment
conditions. It includes the two step Generalized method of
moments (GMM) of Hansen(1982), the iterated GMM and continuous
updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several
methods that belong to the Generalized Empirical Likelihood
(GEL) family of estimators, as presented by Smith(1997),
Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).
DESCRIPTION | 10
NEWS | 6
R/gmm_tools.R | 30 +
data/Finance.rda |binary
inst/doc/gmm_with_R.pdf | 800 ++++++++++++++++++++++++------------------------
inst/doc/gmm_with_R.rnw | 10
man/Finance.Rd | 72 +---
man/gmm.Rd | 81 ++--
man/kweights2.Rd |only
man/lintest.Rd | 2
man/rho.Rd | 19 -
11 files changed, 512 insertions(+), 518 deletions(-)
Path: /cran/updated | permanent link
Author: Friedrich Leisch
Title: Flexible Cluster Algorithms
Description: The main function kcca implements a general framework for
k-centroids cluster analysis supporting arbitrary distance
measures and centroid computation. Further cluster methods
include hard competitive learning, neural gas, and QT
clustering. There are numerous visualization methods for
cluster results (neighborhood graphs, convex cluster hulls,
barcharts of centroids, ...), and bootstrap methods for the
analysis of cluster stability.
Diff between flexclust versions 1.2-0 dated 2009-06-19 and 1.2-1 dated 2009-07-02
DESCRIPTION | 8 +-- NEWS | 16 ++++++- R/AAA-classes.R | 9 ++++ R/bootstrap.R | 110 ++++++++++++++++++++++++++++++++++++++++++++++++--- R/utils.R | 6 -- man/bootFlexclust.Rd | 22 +++++++--- man/stepFlexclust.Rd | 4 + 7 files changed, 153 insertions(+), 22 deletions(-)
More information about flexclust at CRAN
Path: /cran/updated | permanent link
Author: Ingo Feinerer
Title: Text Mining Package
Description: A framework for text mining applications within R.
Diff between tm versions 0.3-4.1 dated 2009-05-04 and 0.4 dated 2009-07-01
tm-0.3-4.1/tm/R/plaintextdoc.R |only tm-0.3-4.1/tm/R/resolve.R |only tm-0.3-4.1/tm/R/sparse.R |only tm-0.3-4.1/tm/R/textdoccol.R |only tm-0.3-4.1/tm/man/TermDocMatrix.Rd |only tm-0.3-4.1/tm/man/TextDocCol-class.Rd |only tm-0.3-4.1/tm/man/TextDocCol.Rd |only tm-0.3-4.1/tm/man/appendMeta.Rd |only tm-0.3-4.1/tm/man/loadDoc.Rd |only tm-0.3-4.1/tm/man/removeMeta.Rd |only tm-0.3-4.1/tm/man/tmUpdate.Rd |only tm-0.4/tm/DESCRIPTION | 12 - tm-0.4/tm/NAMESPACE | 49 ++---- tm-0.4/tm/R/aobjects.R | 106 +++++-------- tm-0.4/tm/R/chunks.R | 2 tm-0.4/tm/R/corpus.R |only tm-0.4/tm/R/distmeasure.R | 1 tm-0.4/tm/R/doc.R |only tm-0.4/tm/R/filter.R | 26 --- tm-0.4/tm/R/matrix.R | 44 ++++- tm-0.4/tm/R/meta.R | 54 ++++-- tm-0.4/tm/R/reader.R | 205 ++++++++++++++------------ tm-0.4/tm/R/source.R | 69 +++----- tm-0.4/tm/R/stopwords.R | 18 +- tm-0.4/tm/R/textrepo.R | 15 - tm-0.4/tm/R/transform.R | 107 ++++++------- tm-0.4/tm/R/weight.R | 29 --- tm-0.4/tm/data/acq.rda |binary tm-0.4/tm/data/crude.rda |binary tm-0.4/tm/inst/CITATION | 6 tm-0.4/tm/inst/NEWS | 24 +++ tm-0.4/tm/inst/doc/extensions.Rnw | 2 tm-0.4/tm/inst/doc/extensions.pdf |binary tm-0.4/tm/inst/doc/tm.Rnw | 162 ++++++++++---------- tm-0.4/tm/inst/doc/tm.pdf |binary tm-0.4/tm/man/Corpus-class.Rd |only tm-0.4/tm/man/IN-methods.Rd | 3 tm-0.4/tm/man/NewsgroupDocument-class.Rd | 28 ++- tm-0.4/tm/man/PCorpus-class.Rd |only tm-0.4/tm/man/PCorpus.Rd |only tm-0.4/tm/man/PlainTextDocument-class.Rd | 22 ++ tm-0.4/tm/man/StructuredTextDocument-class.Rd | 22 ++ tm-0.4/tm/man/TextRepository-class.Rd | 4 tm-0.4/tm/man/VCorpus-class.Rd |only tm-0.4/tm/man/VCorpus.Rd |only tm-0.4/tm/man/XMLTextDocument-class.Rd | 22 ++ tm-0.4/tm/man/acq.Rd | 5 tm-0.4/tm/man/appendElem.Rd | 11 - tm-0.4/tm/man/asPlain.Rd | 2 tm-0.4/tm/man/convertReut21578XMLPlain.Rd | 7 tm-0.4/tm/man/crude.Rd | 5 tm-0.4/tm/man/inspect.Rd | 6 tm-0.4/tm/man/materialize.Rd | 1 tm-0.4/tm/man/matrix.Rd |only tm-0.4/tm/man/meta.Rd | 1 tm-0.4/tm/man/prescindMeta.Rd | 33 ++-- tm-0.4/tm/man/readDOC.Rd | 4 tm-0.4/tm/man/readGmane.Rd | 4 tm-0.4/tm/man/readHTML.Rd | 5 tm-0.4/tm/man/readNewsgroup.Rd | 5 tm-0.4/tm/man/readPDF.Rd | 8 - tm-0.4/tm/man/readPlain.Rd | 9 - tm-0.4/tm/man/readRCV1.Rd | 4 tm-0.4/tm/man/readReut21578XML.Rd | 9 - tm-0.4/tm/man/readTabular.Rd | 6 tm-0.4/tm/man/readXML.Rd | 10 - tm-0.4/tm/man/removeSignature.Rd | 2 tm-0.4/tm/man/sFilter.Rd | 5 tm-0.4/tm/man/stopwords.Rd | 6 tm-0.4/tm/man/subset-methods.Rd | 26 +-- tm-0.4/tm/man/tmMap-methods.Rd | 11 - tm-0.4/tm/man/weightBin.Rd | 5 tm-0.4/tm/man/weightTf.Rd | 4 tm-0.4/tm/man/weightTfIdf.Rd | 5 74 files changed, 632 insertions(+), 599 deletions(-)
More information about tm at CRAN
Path: /cran/updated | permanent link
Author: D.J.J. Walvoort, D.J. Brus, and J.J. de Gruijter
Title: Spatial Coverage Sampling
Description: Spatial coverage sampling and random sampling from compact
geographical strata created by k-means.
Diff between spcosa versions 0.1-3 dated 2009-05-17 and 0.1-4 dated 2009-07-01
spcosa-0.1-3/spcosa/tests/runTestSuite.Rout |only spcosa-0.1-4/spcosa/DESCRIPTION | 12 spcosa-0.1-4/spcosa/NEWS | 38 spcosa-0.1-4/spcosa/R/method_getCellSize-CompactStratification.R | 2 spcosa-0.1-4/spcosa/R/method_getNumberOfCells-CompactStratification.R | 2 spcosa-0.1-4/spcosa/R/method_setAs_CompactStratification-SpatialPixels.R | 2 spcosa-0.1-4/spcosa/R/method_setAs_CompactStratification-SpatialPixelsDataFrame.R | 8 spcosa-0.1-4/spcosa/R/method_spsample_CompactStratification-numeric-missing.R | 1 spcosa-0.1-4/spcosa/inst/doc/spcosa.pdf | 2077 ++++------ spcosa-0.1-4/spcosa/man/stratify-methods.Rd | 6 spcosa-0.1-4/spcosa/tests/unitTesting.html | 18 11 files changed, 1019 insertions(+), 1147 deletions(-)
More information about spcosa at CRAN
Path: /cran/updated | permanent link
Author: Kurt Hornik, David Meyer, Christian Buchta
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and
matrices, based on index arrays and simple triplet
representations, respectively.
Diff between slam versions 0.1 dated 2009-06-26 and 0.1-1 dated 2009-07-01
DESCRIPTION | 10 +++++----- NAMESPACE | 24 ++++++++++++++++++++++++ R/matrix.R | 12 ++++++++++++ R/stm.R |only man/crossprod.Rd |only man/sums.Rd |only src |only tests |only 8 files changed, 41 insertions(+), 5 deletions(-)
More information about slam at CRAN
Path: /cran/updated | permanent link
Author: Delphine Charif and Jean R. Lobry and Anamaria Necsulea and
Leonor Palmeira and Simon Penel
Title: Biological Sequences Retrieval and Analysis
Description: Exploratory data analysis and data visualization for
biological sequence (DNA and protein) data. Include also
utilities for sequence data management under the ACNUC system.
Diff between seqinr versions 2.0-3 dated 2009-04-28 and 2.0-4 dated 2009-07-01
DESCRIPTION | 10 R/readBins.R | 9 R/readPanels.R | 7 inst/abif/Prototype_PowerPlex_EP01_Bins.txt |only inst/abif/Prototype_PowerPlex_EP01_Pa.txt |only inst/doc/seqinr_2_0-3.pdf | 8400 ++++++++++++++-------------- inst/doc/src/appendix/releasenotes.rnw | 28 man/readBins.Rd | 8 man/readPanels.Rd | 7 9 files changed, 4268 insertions(+), 4201 deletions(-)
More information about seqinr at CRAN
Path: /cran/updated | permanent link
Author: Julien Barnier
Diff between rgrs versions 0.2-10 dated 2009-06-09 and 0.2-11 dated 2009-07-01
More information about rgrs at CRAN
Title: Functions to make R usage in social sciences easier (in french)
Description: This package provides functions for beginners and social
sciences students or researchers. Currently it includes
functions for cross-tabulation, weighting, results export, and
maps plotting. The documentation and help pages are written in
french.
DESCRIPTION | 10 +++++-----
R/copie.default.R | 10 ++++++----
data/hdv2003.rda |binary
3 files changed, 11 insertions(+), 9 deletions(-)
Path: /cran/updated | permanent link
Author: Kurt Hornik and David Meyer
Title: Data Structures and Algorithms for Relations
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate
functions, and fitters for consensus relations.
Diff between relations versions 0.5-1 dated 2009-02-20 and 0.5-2 dated 2009-07-01
relations-0.5-1/relations/R/sparse.R |only relations-0.5-2/relations/DESCRIPTION | 20 + relations-0.5-2/relations/NAMESPACE | 23 -- relations-0.5-2/relations/NEWS | 4 relations-0.5-2/relations/R/fitters.R | 6 relations-0.5-2/relations/R/mip.R | 44 ++-- relations-0.5-2/relations/R/relation.R | 5 relations-0.5-2/relations/inst/NEWS | 4 relations-0.5-2/relations/inst/doc/relations.pdf |binary relations-0.5-2/relations/inst/po/en@quot/LC_MESSAGES/R-relations.mo |binary relations-0.5-2/relations/po/R-en@quot.po | 105 ++++++---- relations-0.5-2/relations/po/R-relations.pot | 82 +++++-- 12 files changed, 178 insertions(+), 115 deletions(-)
More information about relations at CRAN
Path: /cran/updated | permanent link
Author: Karl W Broman
Diff between qtlbook versions 0.17-1 dated 2009-04-28 and 0.17-2 dated 2009-07-01
More information about qtlbook at CRAN
Title: Datasets for the R/qtl book
Description: Datasets for the book, A Guide to QTL Mapping with R/qtl
DESCRIPTION | 10 +++++-----
inst/CITATION |only
inst/STATUS.txt | 7 +++++++
man/ch3a.Rd | 5 +++++
man/ch3b.Rd | 5 +++++
man/ch3c.Rd | 5 +++++
6 files changed, 27 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Author: Karl W Broman
Diff between qtl versions 1.11-12 dated 2009-03-29 and 1.12-26 dated 2009-07-01
More information about qtl at CRAN
Title: Tools for analyzing QTL experiments
Description: Analysis of experimental crosses to identify genes (called
quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
qtl-1.11-12/qtl/src/hmm_cc.c |only
qtl-1.11-12/qtl/src/hmm_cc.h |only
qtl-1.11-12/qtl/src/simulate_cc.c |only
qtl-1.11-12/qtl/src/simulate_cc.h |only
qtl-1.12-26/qtl/DESCRIPTION | 12
qtl-1.12-26/qtl/INDEX | 6
qtl-1.12-26/qtl/R/add.cim.covar.R | 13
qtl-1.12-26/qtl/R/add_threshold.R | 57 +++-
qtl-1.12-26/qtl/R/addqtl.R | 21 +
qtl-1.12-26/qtl/R/argmax.geno.R | 35 +-
qtl-1.12-26/qtl/R/arithscan.R | 31 +-
qtl-1.12-26/qtl/R/calc.genoprob.R | 59 +++-
qtl-1.12-26/qtl/R/calc.pairprob.R | 54 ++--
qtl-1.12-26/qtl/R/cim.R | 19 -
qtl-1.12-26/qtl/R/compareorder.R | 25 -
qtl-1.12-26/qtl/R/countXO.R | 49 ++-
qtl-1.12-26/qtl/R/discan.R | 13
qtl-1.12-26/qtl/R/effectplot.R | 13
qtl-1.12-26/qtl/R/effectscan.R | 13
qtl-1.12-26/qtl/R/errorlod.R | 21 -
qtl-1.12-26/qtl/R/est.map.R | 27 +-
qtl-1.12-26/qtl/R/est.rf.R | 31 +-
qtl-1.12-26/qtl/R/fitqtl.R | 16 -
qtl-1.12-26/qtl/R/fitstahl.R | 13
qtl-1.12-26/qtl/R/makeqtl.R | 13
qtl-1.12-26/qtl/R/map_construction.R | 13
qtl-1.12-26/qtl/R/plot.R | 27 +-
qtl-1.12-26/qtl/R/plot.scanone.R | 19 -
qtl-1.12-26/qtl/R/plot.scantwo.R | 22 -
qtl-1.12-26/qtl/R/plotModel.R | 13
qtl-1.12-26/qtl/R/plotperm.R | 13
qtl-1.12-26/qtl/R/qtlcart_io.R | 13
qtl-1.12-26/qtl/R/read.cross.R | 39 +-
qtl-1.12-26/qtl/R/read.cross.csv.R | 35 --
qtl-1.12-26/qtl/R/read.cross.csvs.R | 24 -
qtl-1.12-26/qtl/R/read.cross.gary.R | 13
qtl-1.12-26/qtl/R/read.cross.karl.R | 13
qtl-1.12-26/qtl/R/read.cross.mm.R | 13
qtl-1.12-26/qtl/R/read.cross.qtx.R | 13
qtl-1.12-26/qtl/R/readMWril.R |only
qtl-1.12-26/qtl/R/refineqtl.R | 13
qtl-1.12-26/qtl/R/replacemap.R | 20 -
qtl-1.12-26/qtl/R/ril48_reorg.R |only
qtl-1.12-26/qtl/R/ripple.R | 33 +-
qtl-1.12-26/qtl/R/scanone.R | 47 ++-
qtl-1.12-26/qtl/R/scanoneboot.R | 13
qtl-1.12-26/qtl/R/scanqtl.R | 13
qtl-1.12-26/qtl/R/scantwo.R | 74 +++--
qtl-1.12-26/qtl/R/sim.geno.R | 38 ++
qtl-1.12-26/qtl/R/sim_ril.R | 244 +++++++++++-------
qtl-1.12-26/qtl/R/simulate.R | 54 +++-
qtl-1.12-26/qtl/R/stepwiseqtl.R | 17 -
qtl-1.12-26/qtl/R/summary.cross.R | 60 ++--
qtl-1.12-26/qtl/R/summary.scanone.R | 47 ++-
qtl-1.12-26/qtl/R/summary.scantwo.R | 67 +++--
qtl-1.12-26/qtl/R/summary.scantwo.old.R | 13
qtl-1.12-26/qtl/R/tryallpositions.R | 27 +-
qtl-1.12-26/qtl/R/util.R | 301 +++++++++++++++++++++-
qtl-1.12-26/qtl/R/vbscan.R | 13
qtl-1.12-26/qtl/R/write.cross.R | 13
qtl-1.12-26/qtl/R/xchr.R | 13
qtl-1.12-26/qtl/R/zzz.R | 13
qtl-1.12-26/qtl/inst/BUGS.txt | 16 +
qtl-1.12-26/qtl/inst/CITATION |only
qtl-1.12-26/qtl/inst/LICENSE.txt | 10
qtl-1.12-26/qtl/inst/README.txt | 12
qtl-1.12-26/qtl/inst/STATUS.txt | 152 ++++++++++-
qtl-1.12-26/qtl/inst/TODO.txt | 32 +-
qtl-1.12-26/qtl/inst/docs/rqtltour.R | 2
qtl-1.12-26/qtl/inst/docs/rqtltour.pdf | 344 ++++++++++++--------------
qtl-1.12-26/qtl/inst/docs/rqtltour.tex | 6
qtl-1.12-26/qtl/man/add.threshold.Rd | 4
qtl-1.12-26/qtl/man/checkAlleles.Rd | 2
qtl-1.12-26/qtl/man/chrnames.Rd |only
qtl-1.12-26/qtl/man/clean.cross.Rd | 3
qtl-1.12-26/qtl/man/clean.scantwo.Rd | 13
qtl-1.12-26/qtl/man/compareorder.Rd | 2
qtl-1.12-26/qtl/man/findDupMarkers.Rd |only
qtl-1.12-26/qtl/man/geno.crosstab.Rd | 5
qtl-1.12-26/qtl/man/listeria.Rd | 2
qtl-1.12-26/qtl/man/max.scanone.Rd | 2
qtl-1.12-26/qtl/man/plot.rf.Rd | 5
qtl-1.12-26/qtl/man/plot.scanone.Rd | 2
qtl-1.12-26/qtl/man/qtl-internal.Rd | 30 +-
qtl-1.12-26/qtl/man/readMWril.Rd |only
qtl-1.12-26/qtl/man/ripple.Rd | 2
qtl-1.12-26/qtl/man/scanone.Rd | 7
qtl-1.12-26/qtl/man/scantwo.Rd | 14 -
qtl-1.12-26/qtl/man/sim.cross.Rd | 88 ++++++
qtl-1.12-26/qtl/man/simFounderSnps.Rd |only
qtl-1.12-26/qtl/man/subset.cross.Rd | 9
qtl-1.12-26/qtl/man/subset.map.Rd |only
qtl-1.12-26/qtl/man/summary.scanone.Rd | 6
qtl-1.12-26/qtl/man/summary.scantwo.Rd | 4
qtl-1.12-26/qtl/man/switch.order.Rd | 2
qtl-1.12-26/qtl/man/tryallpositions.Rd | 8
qtl-1.12-26/qtl/man/xaxisloc.scanone.Rd |only
qtl-1.12-26/qtl/src/countXO.c | 32 +-
qtl-1.12-26/qtl/src/countXO.h | 31 +-
qtl-1.12-26/qtl/src/discan.c | 13
qtl-1.12-26/qtl/src/discan.h | 13
qtl-1.12-26/qtl/src/discan_covar.c | 13
qtl-1.12-26/qtl/src/discan_covar.h | 13
qtl-1.12-26/qtl/src/effectscan.c | 13
qtl-1.12-26/qtl/src/effectscan.h | 13
qtl-1.12-26/qtl/src/findDupMarkers_notexact.c |only
qtl-1.12-26/qtl/src/findDupMarkers_notexact.h |only
qtl-1.12-26/qtl/src/fitqtl_hk.c | 13
qtl-1.12-26/qtl/src/fitqtl_hk.h | 13
qtl-1.12-26/qtl/src/fitqtl_imp.c | 13
qtl-1.12-26/qtl/src/fitqtl_imp.h | 13
qtl-1.12-26/qtl/src/forwsel.c | 13
qtl-1.12-26/qtl/src/forwsel.h | 13
qtl-1.12-26/qtl/src/hmm_4way.c | 23 -
qtl-1.12-26/qtl/src/hmm_4way.h | 13
qtl-1.12-26/qtl/src/hmm_bc.c | 19 -
qtl-1.12-26/qtl/src/hmm_bc.h | 13
qtl-1.12-26/qtl/src/hmm_bci.c | 13
qtl-1.12-26/qtl/src/hmm_bci.h | 13
qtl-1.12-26/qtl/src/hmm_f2.c | 23 -
qtl-1.12-26/qtl/src/hmm_f2.h | 15 -
qtl-1.12-26/qtl/src/hmm_f2i.c | 13
qtl-1.12-26/qtl/src/hmm_f2i.h | 13
qtl-1.12-26/qtl/src/hmm_main.c | 35 +-
qtl-1.12-26/qtl/src/hmm_main.h | 21 -
qtl-1.12-26/qtl/src/hmm_ri4self.c |only
qtl-1.12-26/qtl/src/hmm_ri4self.h |only
qtl-1.12-26/qtl/src/hmm_ri4sib.c |only
qtl-1.12-26/qtl/src/hmm_ri4sib.h |only
qtl-1.12-26/qtl/src/hmm_ri8self.c |only
qtl-1.12-26/qtl/src/hmm_ri8self.h |only
qtl-1.12-26/qtl/src/hmm_ri8sib.c |only
qtl-1.12-26/qtl/src/hmm_ri8sib.h |only
qtl-1.12-26/qtl/src/info.c | 13
qtl-1.12-26/qtl/src/info.h | 13
qtl-1.12-26/qtl/src/lapackutil.c | 13
qtl-1.12-26/qtl/src/lapackutil.h | 13
qtl-1.12-26/qtl/src/ril48_reorg.c |only
qtl-1.12-26/qtl/src/ril48_reorg.h |only
qtl-1.12-26/qtl/src/ripple.c | 75 ++++-
qtl-1.12-26/qtl/src/ripple.h | 46 ++-
qtl-1.12-26/qtl/src/scanone_ehk.c | 13
qtl-1.12-26/qtl/src/scanone_ehk.h | 13
qtl-1.12-26/qtl/src/scanone_em.c | 13
qtl-1.12-26/qtl/src/scanone_em.h | 13
qtl-1.12-26/qtl/src/scanone_em_covar.c | 13
qtl-1.12-26/qtl/src/scanone_em_covar.h | 13
qtl-1.12-26/qtl/src/scanone_hk.c | 13
qtl-1.12-26/qtl/src/scanone_hk.h | 13
qtl-1.12-26/qtl/src/scanone_imp.c | 13
qtl-1.12-26/qtl/src/scanone_imp.h | 13
qtl-1.12-26/qtl/src/scanone_mr.c | 13
qtl-1.12-26/qtl/src/scanone_mr.h | 13
qtl-1.12-26/qtl/src/scanone_np.c | 13
qtl-1.12-26/qtl/src/scanone_np.h | 13
qtl-1.12-26/qtl/src/scantwo_binary_em.c | 13
qtl-1.12-26/qtl/src/scantwo_binary_em.h | 13
qtl-1.12-26/qtl/src/scantwo_em.c | 13
qtl-1.12-26/qtl/src/scantwo_em.h | 13
qtl-1.12-26/qtl/src/scantwo_hk.c | 13
qtl-1.12-26/qtl/src/scantwo_hk.h | 13
qtl-1.12-26/qtl/src/scantwo_imp.c | 13
qtl-1.12-26/qtl/src/scantwo_imp.h | 13
qtl-1.12-26/qtl/src/scantwo_mr.c | 13
qtl-1.12-26/qtl/src/scantwo_mr.h | 13
qtl-1.12-26/qtl/src/simulate.c | 13
qtl-1.12-26/qtl/src/simulate.h | 13
qtl-1.12-26/qtl/src/simulate_ril.c |only
qtl-1.12-26/qtl/src/simulate_ril.h |only
qtl-1.12-26/qtl/src/stahl_mf.c | 13
qtl-1.12-26/qtl/src/stahl_mf.h | 13
qtl-1.12-26/qtl/src/summary_scantwo.c | 13
qtl-1.12-26/qtl/src/summary_scantwo.h | 13
qtl-1.12-26/qtl/src/util.c | 75 ++++-
qtl-1.12-26/qtl/src/util.h | 45 ++-
qtl-1.12-26/qtl/src/vbscan.c | 13
qtl-1.12-26/qtl/src/vbscan.h | 13
qtl-1.12-26/qtl/tests/test_io.R | 13
qtl-1.12-26/qtl/tests/test_io.Rout.save | 29 +-
179 files changed, 2449 insertions(+), 1463 deletions(-)
Path: /cran/updated | permanent link
Author: William Revelle
Diff between psych versions 1.0-74 dated 2009-06-26 and 1.0-75 dated 2009-07-01
More information about psych at CRAN
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale
construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. Functions for simulating particular item and test
structures are included. Several functions serve as a useful
front end for structural equation modeling. For more
information, see the personality-project.org/r webpage.
CHANGES | 6
DESCRIPTION | 8
R/fa.R | 1
R/omega.R | 2
R/principal.R | 2
R/print.psych.fa.R | 6
R/smc.R | 2
data/Harman.rda |only
inst/NEWS | 5
inst/doc/all.bib | 584 +-
inst/doc/overview.Rnw | 45
inst/doc/overview.pdf | 9090 ++++++++++++++++++++--------------------
inst/doc/psych_for_sem.Rnw | 29
inst/doc/psych_for_sem.pdf | 9988 ++++++++++++++++++++++-----------------------
man/00.psych-package.Rd | 12
man/Harman.Rd |only
man/ICLUST.Rd | 1
man/ICLUST.graph.Rd | 1
man/ICLUST.sort.Rd | 1
man/SD.Rd | 1
man/VSS.parallel.Rd | 1
man/VSS.plot.Rd | 1
man/VSS.scree.Rd | 6
man/bifactor.Rd | 1
man/circ.tests.Rd | 2
man/cluster.cor.Rd | 2
man/cluster.fit.Rd | 1
man/cluster.loadings.Rd | 1
man/count.pairwise.Rd | 1
man/describe.Rd | 1
man/describe.by.Rd | 1
man/eigen.loadings.Rd | 1
man/ellipses.Rd | 1
man/error.bars.Rd | 1
man/error.crosses.Rd | 1
man/fa.Rd | 2
man/fa.graph.Rd | 1
man/fa.parallel.Rd | 1
man/factor.congruence.Rd | 1
man/factor.fit.Rd | 1
man/factor.model.Rd | 1
man/factor.residuals.Rd | 1
man/factor.rotate.Rd | 1
man/factor2cluster.Rd | 1
man/geometric.mean.Rd | 1
man/harmonic.mean.Rd | 1
man/irt.item.diff.rasch.Rd | 1
man/irt.person.rasch.Rd | 1
man/mat.regress.Rd | 1
man/matrix.addition.Rd | 1
man/multi.hist.Rd | 1
man/omega.Rd | 3
man/omega.graph.Rd | 1
man/p.rep.Rd | 1
man/pairs.panels.Rd | 1
man/phi.demo.Rd | 1
man/phi2poly.Rd | 1
man/polar.Rd | 1
man/poly.mat.Rd | 5
man/polychor.matrix.Rd | 1
man/principal.Rd | 2
man/r.test.Rd | 1
man/read.clipboard.Rd | 1
man/schmid.Rd | 1
man/score.alpha.Rd | 1
man/score.items.Rd | 1
man/sim.VSS.Rd | 1
man/sim.congeneric.Rd | 1
man/sim.hierarchical.Rd | 1
man/sim.item.Rd | 1
man/simulation.circ.Rd | 1
man/table2matrix.Rd | 1
man/test.psych.Rd | 1
man/thurstone.Rd | 6
74 files changed, 10199 insertions(+), 9659 deletions(-)
Path: /cran/updated | permanent link
Author: Karl W Broman
Diff between negenes versions 0.98-7 dated 2007-10-09 and 0.98-8 dated 2009-07-01
More information about negenes at CRAN
Title: Estimating the number of essential genes in a genome
Description: Estimating the number of essential genes in a genome on
the basis of data from a random transposon mutagenesis
experiment, through the use of a Gibbs sampler.
DESCRIPTION | 14 +++++++++-----
inst/CITATION |only
inst/STATUS.txt | 5 +++++
3 files changed, 14 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.2.1 dated 2009-06-19 and 3.3.1 dated 2009-07-01
mclust-3.2.1/mclust/README |only mclust-3.3.1/mclust/CHANGELOG | 23 ++ mclust-3.3.1/mclust/DESCRIPTION | 6 mclust-3.3.1/mclust/R/mclust.R | 262 +++++++++++++++++++++--------- mclust-3.3.1/mclust/core |only mclust-3.3.1/mclust/man/Mclust.Rd | 14 + mclust-3.3.1/mclust/man/decomp2sigma.Rd | 6 mclust-3.3.1/mclust/man/defaultPrior.Rd | 12 - mclust-3.3.1/mclust/man/em.Rd | 12 - mclust-3.3.1/mclust/man/emE.Rd | 12 - mclust-3.3.1/mclust/man/mclustBIC.Rd | 17 + mclust-3.3.1/mclust/man/mclustVariance.Rd | 7 mclust-3.3.1/mclust/man/me.Rd | 17 + mclust-3.3.1/mclust/man/meE.Rd | 17 + mclust-3.3.1/mclust/man/priorControl.Rd | 12 - mclust-3.3.1/mclust/man/sigma2decomp.Rd | 8 mclust-3.3.1/mclust/man/unmap.Rd | 9 - 17 files changed, 307 insertions(+), 127 deletions(-)
More information about mclust at CRAN
Path: /cran/updated | permanent link
More information about gsDesign at CRAN
Path: /cran/new | permanent link
Author: Toni Giorgino
Diff between dtw versions 1.12-5 dated 2009-01-07 and 1.13-1 dated 2009-07-01
More information about dtw at CRAN
Title: Dynamic Time Warping algorithms
Description: Comprehensive implementation of Dynamic Time Warping
algorithms in R. DTW finds the optimal (least cumulative
distance) mapping between two time series. All common DTW
variants are covered, including local and global constraints,
arbitrary timeseries lenghts, distance definitions, MVM, etc.
Package computes cumulative distance, warping functions, plots,
normalizations, etc.
DESCRIPTION | 25 +++++++++++++----------
NAMESPACE |only
R/dtw.R | 13 +++++++++++-
R/globalCostMatrix.R | 4 +--
R/plot.dtw.R | 7 +++---
R/window.R | 6 +----
R/zzz.R | 16 +++++----------
inst/ChangeLog | 6 +++++
inst/TODO | 46 ++++++++++----------------------------------
inst/dtw.bib | 49 +++++++++++++++++++++++++++++++++++++++++++++++
man/dtw-package.Rd | 8 +++----
man/dtw.Rd | 2 +
man/dtwPlot.Rd | 13 +++++++-----
man/stepPattern.Rd | 6 ++---
tests/dtw_test.R | 21 ++++++++++++++++----
tests/dtw_test.Rout.save | 25 ++++++++++++++++++-----
16 files changed, 159 insertions(+), 88 deletions(-)
Path: /cran/updated | permanent link
More information about dlnm at CRAN
Path: /cran/new | permanent link
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.18 dated 2009-06-18 and 4.19 dated 2009-07-01
DESCRIPTION | 8 R/createModel.R | 185 +++++++++- R/misc.R | 2 R/predict.train.R | 2 R/predictionFunction.R | 1 R/train.default.R | 25 - inst/CHANGES | 11 inst/doc/caretMisc.pdf | 782 ++++++++++++++++++++++---------------------- inst/doc/caretSelection.pdf | 637 +++++++++++++++++------------------ inst/doc/caretTrain.pdf |binary inst/doc/caretVarImp.pdf |binary man/train.Rd | 4 12 files changed, 911 insertions(+), 746 deletions(-)
More information about caret at CRAN
Path: /cran/updated | permanent link
More information about bvpSolve at CRAN
Path: /cran/new | permanent link
Author: Tomas William Fitzgerald
Title: Robust spline interpolation for dual color array comparative
genomic hybridisation data
Description: Spline fitting and interpolation
Diff between aCGH.Spline versions 1.0 dated 2009-06-24 and 2.1 dated 2009-07-01
DESCRIPTION | 10 +++++----- R/GenomePlot.R | 1 + R/Jspline.R | 7 ++++--- R/SetJ.R | 1 + R/WriteGFF.R | 2 +- R/fe.write.R | 3 ++- 6 files changed, 14 insertions(+), 10 deletions(-)
More information about aCGH.Spline at CRAN
Path: /cran/updated | permanent link
Author: Adrian Dusa
Diff between QCA versions 0.5-3 dated 2009-03-28 and 0.5-4 dated 2009-07-01
More information about QCA at CRAN
Title: Qualitative Comparative Analysis
Description: Performs the Quine-McCluskey algorithm for Qualitative
Comparative Analysis, as described in Ragin, Charles C. 1987
"The Comparative Method. Moving beyond qualitative and
quantitative strategies", Berkeley: University of California
Press. In the classical approach it currently handles about 15
conditions and one outcome, but since version 0.4-5 the package
has an enhanced, faster function that obtains the same exact
solutions with a substantially lower memory consumption, and it
handles even more causal conditions. The next versions of this
algorithm will be oriented towards multi-value and fuzzy-set
functions. Also, in the near future the current functions will
deal with missing values in the data
DESCRIPTION | 10 +++++-----
R/eqmcc.R | 18 +++++++++---------
R/qmcc.R | 23 ++++++++++++-----------
R/verifyQCA.R | 2 +-
R/writePrimeimp.R | 6 +++---
inst/CHANGES | 6 +++++-
man/QCA.package.Rd | 4 ++--
7 files changed, 37 insertions(+), 32 deletions(-)
Path: /cran/updated | permanent link
Author: Martin Schlather
Diff between RandomFields versions 1.3.39 dated 2009-06-29 and 1.3.40 dated 2009-07-01
More information about RandomFields at CRAN
Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields;
conditional simulation; kriging
DESCRIPTION | 6 +++---
src/auxiliary.cc | 6 +++---
2 files changed, 6 insertions(+), 6 deletions(-)
Path: /cran/updated | permanent link
Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Title: R/Weka interface
Description: An R interface to Weka (Version 3.6.1). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Both the R interface and Weka itself are
contained in the RWeka package. For more information on Weka
see http://www.cs.waikato.ac.nz/~ml/weka/.
Diff between RWeka versions 0.3-19 dated 2009-06-09 and 0.3-20 dated 2009-07-01
CHANGELOG | 6 +++++- DESCRIPTION | 10 +++++----- R/classifiers.R | 20 +++++++++++++------- R/onLoad.R | 10 ++-------- R/readers.R | 38 +++++++++++++++++++------------------- inst/java/RWeka.jar |binary inst/java/weka.jar |binary java/Makefile | 20 ++++++++++++++++++++ 8 files changed, 64 insertions(+), 40 deletions(-)
More information about RWeka at CRAN
Path: /cran/updated | permanent link
Author: Jose L. Izquierdo
Diff between Metabonomic versions 3.1.3.3 dated 2009-05-12 and 3.2 dated 2009-07-01
More information about Metabonomic at CRAN
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis
(Baseline, Normalization, Peak Detection, PCA, PLS, Nearest
Neigbourgt, Neural Network) developed to make easy this data
analysis.
Metabonomic-3.1.3.3/Metabonomic/R/Met.Baseline.R |only
Metabonomic-3.1.3.3/Metabonomic/R/Met.LDA.multi.R |only
Metabonomic-3.1.3.3/Metabonomic/R/Met.LDA.multi2.R |only
Metabonomic-3.1.3.3/Metabonomic/R/Met.PLS2.multi.R |only
Metabonomic-3.1.3.3/Metabonomic/R/Met.PLS2.multi2.R |only
Metabonomic-3.1.3.3/Metabonomic/R/Met.PLS3D.R |only
Metabonomic-3.1.3.3/Metabonomic/man/Met.Baseline.Rd |only
Metabonomic-3.1.3.3/Metabonomic/man/Met.LDA.multi.Rd |only
Metabonomic-3.1.3.3/Metabonomic/man/Met.LDA.multi2.Rd |only
Metabonomic-3.1.3.3/Metabonomic/man/Met.PLS2.multi.Rd |only
Metabonomic-3.1.3.3/Metabonomic/man/Met.PLS2.multi2.Rd |only
Metabonomic-3.1.3.3/Metabonomic/man/Met.PLS3D.Rd |only
Metabonomic-3.2/Metabonomic/DESCRIPTION | 10
Metabonomic-3.2/Metabonomic/R/Import.data.R | 36
Metabonomic-3.2/Metabonomic/R/Met.KNN.R | 168 -
Metabonomic-3.2/Metabonomic/R/Met.LDA.R | 611 ++--
Metabonomic-3.2/Metabonomic/R/Met.Load.Data.R | 2
Metabonomic-3.2/Metabonomic/R/Met.NN1.R | 165 -
Metabonomic-3.2/Metabonomic/R/Met.NN2.R | 239 -
Metabonomic-3.2/Metabonomic/R/Met.PLS1.R | 109
Metabonomic-3.2/Metabonomic/R/Met.PLS2.R | 2223 ++++-------------
Metabonomic-3.2/Metabonomic/R/Met.Selection.R | 319 --
Metabonomic-3.2/Metabonomic/R/Phase.correction.R | 376 +-
Metabonomic-3.2/Metabonomic/inst |only
24 files changed, 1435 insertions(+), 2823 deletions(-)
Path: /cran/updated | permanent link
Author: Andrew D. Martin
Diff between MCMCpack versions 0.9-6 dated 2009-02-17 and 1.0-1 dated 2009-07-01
More information about MCMCpack at CRAN
Title: Markov chain Monte Carlo (MCMC) Package
Description: This package contains functions to perform Bayesian
inference using posterior simulation for a number of
statistical models. Most simulation is done in compiled C++
written in the Scythe Statistical Library Version 1.0.2. All
models return coda mcmc objects that can then be summarized
using the coda package. MCMCpack also contains some useful
utility functions, including some additional density functions
and pseudo-random number generators for statistical
distributions, a general purpose Metropolis sampling algorithm,
and tools for visualization.
DESCRIPTION | 32 +++++++++++++++++---------------
HISTORY | 1 +
NAMESPACE | 1 +
R/MCMCdynamicIRT1d-b.R |only
R/MCMCdynamicIRT1d.R |only
data/Rehnquist.rda |only
man/MCMCdynamicIRT1d.Rd |only
man/MCMCirtKd.Rd | 2 +-
man/Rehnquist.Rd |only
src/MCMCdynamicIRT1d-b.cc |only
src/MCMCdynamicIRT1d.cc |only
11 files changed, 20 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Author: Klaus Nordhausen, Jean-Francois Cardoso, Hannu Oja, Esa Ollila
Title: JADE and ICA performance criteria
Description: The package ports JF Cardoso's JADE algorithm as well as
his function for joint diagonalization. There are also several
criteria for performance evaluation of ICA algorithms.
Diff between JADE versions 1.0-2 dated 2009-04-22 and 1.0-3 dated 2009-07-01
DESCRIPTION | 8 ++++---- R/JADE.R | 10 ++++++++-- inst/CHANGES | 5 +++++ man/ComonGAP.Rd | 2 +- man/JADE-package.Rd | 4 ++-- man/JADE.Rd | 14 ++++++++++++++ man/rjd.Rd | 3 ++- 7 files changed, 36 insertions(+), 10 deletions(-)
More information about JADE at CRAN
Path: /cran/updated | permanent link
Author: Hadley Wickham
Diff between DescribeDisplay versions 0.2.0 dated 2009-05-15 and 0.2.1 dated 2009-07-01
More information about DescribeDisplay at CRAN
Title: R interface to DescribeDisplay (GGobi plugin)
Description: Produce publication quality graphics from output of
GGobi's describe display plugin
DESCRIPTION | 6 +++---
NAMESPACE |only
R/data.r | 16 +++++++++++-----
R/ggplot-barchart.r | 12 +++++++-----
R/ggplot-parcoords.r | 3 +++
R/ggplot-scatmat.r | 1 +
R/ggplot-timeseries.r | 6 +++++-
R/ggplot.r | 5 ++++-
man/addbrush.Rd | 4 +---
man/ddpanelGrob.Rd | 4 +---
man/ggplot.ddplot.Rd | 3 +--
man/ggplot.parcoords.Rd | 3 +--
man/plot.dd.Rd | 3 +--
man/plot.ddplot.Rd | 4 +---
14 files changed, 40 insertions(+), 30 deletions(-)
Path: /cran/updated | permanent link
Author: Peter K Dunn
Diff between tweedie versions 1.6.6 dated 2009-06-19 and 1.6.7 dated 2009-06-30
More information about tweedie at CRAN
Title: Tweedie exponential family models
Description: Maximum likelihood computations for Tweedie families.
CHANGE.log | 4 ++++
DESCRIPTION | 8 ++++----
R/tweedie.R | 2 +-
man/tweedie-package.Rd | 6 +++---
src/tweedie.f | 14 +++++++-------
5 files changed, 19 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Author: REvolution Computing
Title: Iterator construct for R
Description: Support for iterators, which allow a programmer to
traverse through all the elements of a vector, list, or other
collection of data.
Diff between iterators versions 1.0.0 dated 2009-06-27 and 1.0.1 dated 2009-06-30
DESCRIPTION | 8 ++++---- inst/doc/iterators.pdf |binary 2 files changed, 4 insertions(+), 4 deletions(-)
More information about iterators at CRAN
Path: /cran/updated | permanent link
Author: REvolution Computing
Title: Foreach looping construct for R
Description: Support for the foreach looping construct. Foreach is an
idiom that allows for iterating over elements in a collection,
without the use of an explicit loop counter. This package in
particular is intended to be used for its return value, rather
than for its side effects. In that sense, it is similar to the
standard lapply function, but doesn't require the evaluation of
a function. Using foreach without side effects also
facilitates executing the loop in parallel.
Diff between foreach versions 1.2.0-1 dated 2009-06-27 and 1.2.1 dated 2009-06-30
DESCRIPTION | 8 inst/doc/foreach.pdf | 1539 +++++++++++++++++++++++++-------------------------- man/foreach.Rd | 9 3 files changed, 791 insertions(+), 765 deletions(-)
More information about foreach at CRAN
Path: /cran/updated | permanent link
Author: REvolution Computing
Title: Foreach parallel adaptor for the multicore package
Description: Provides a parallel backend for the %dopar% function using
Simon Urbanek's multicore package.
Diff between doMC versions 1.1.0 dated 2009-06-27 and 1.1.1 dated 2009-06-30
DESCRIPTION | 9 +++++---- R/doMC.R | 27 ++++++++++++++++++++++----- man/registerDoMC.Rd | 20 ++++++++++++++++---- 3 files changed, 43 insertions(+), 13 deletions(-)
More information about doMC at CRAN
Path: /cran/updated | permanent link
Author: Ingmar Visser
Diff between depmixS4 versions 0.2-1 dated 2009-02-23 and 0.2-2 dated 2009-06-30
More information about depmixS4 at CRAN
Title: Dependent Mixture Models
Description: Fit latent (hidden) Markov models on mixed categorical and
continuous (timeseries) data, otherwise known as dependent
mixture models
depmixS4-0.2-1/depmixS4/NEWS |only
depmixS4-0.2-2/depmixS4/DESCRIPTION | 33 ++++++++-----
depmixS4-0.2-2/depmixS4/R/EM.R | 57 ++++++++++++------------
depmixS4-0.2-2/depmixS4/R/depmixfit.R | 2
depmixS4-0.2-2/depmixS4/R/response-class.R | 2
depmixS4-0.2-2/depmixS4/R/responseGLMMULTINOM.R | 2
depmixS4-0.2-2/depmixS4/man/depmixS4-package.Rd | 4 -
depmixS4-0.2-2/depmixS4/man/mix.sim-class.Rd | 10 +---
8 files changed, 57 insertions(+), 53 deletions(-)
Path: /cran/updated | permanent link
Author: Eric Aldrich
Diff between wavelets versions 0.2-4 dated 2009-04-22 and 0.2-5 dated 2009-06-29
More information about wavelets at CRAN
Title: A package of funtions for computing wavelet filters, wavelet
transforms and multiresolution analyses
Description: This package contains functions for computing and plotting
discrete wavelet transforms (DWT) and maximal overlap discrete
wavelet transforms (MODWT), as well as their inverses.
Additionally, it contains functionality for computing and
plotting wavelet transform filters that are used in the above
decompositions as well as multiresolution analyses.
DESCRIPTION | 8 ++++----
R/modwt.R | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Author: Tim Coelli, Arne Henningsen
Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier
Production and Cost Functions. Two specifications are
available: the error components specification with time-varying
efficiencies (Battese and Coelli, 1992) and a model
specification in which the firm effects are directly influenced
by a number of variables (Battese and Coelli, 1995).
Diff between frontier versions 0.991-0 dated 2009-06-18 and 0.991-2 dated 2009-06-29
DESCRIPTION | 8 NEWS | 11 R/frontier.R | 2 man/frontier.Rd | 16 src/dis.c | 2 src/front41.f | 47 tests/frontierTest.R | 176 tests/frontierTest.Rout.save |11985 +++++++++++++++++++++++++++++++++++++++---- tests/nestedModels.R | 2 tests/nestedModels.Rout.save | 38 10 files changed, 11236 insertions(+), 1051 deletions(-)
More information about frontier at CRAN
Path: /cran/updated | permanent link
Author: Sanford Weisberg
Diff between dr versions 3.0.3 dated 2008-12-11 and 3.0.4 dated 2009-06-29
More information about dr at CRAN
Title: Methods for dimension reduction for regression
Description: Functions, methods, and datasets for fitting dimension
reduction regression, using slicing (methods SAVE and SIR),
Principal Hessian Directions (phd, using residuals and the
response), and an iterative IRE. Partial methods, that
condition on categorical predictors are also available. A
variety of tests, and stepwise deletion of predictors, is also
included. Also included is code for computing permutation
tests of dimension. Adding additional methods of estimating
dimension is straightforward. For documentation, see the
vignette in the package. With version 3.0.4, the arguments for
dr.step have been modified.
dr-3.0.3/dr/Rnew |only
dr-3.0.3/dr/inst/doc/.build.timestamp |only
dr-3.0.3/dr/inst/doc/overview.synctex |only
dr-3.0.4/dr/DESCRIPTION | 43 -
dr-3.0.4/dr/NAMESPACE | 2
dr-3.0.4/dr/R/dr.R | 159 ++--
dr-3.0.4/dr/Rv3.0.2 |only
dr-3.0.4/dr/Rwork |only
dr-3.0.4/dr/data/banknote.txt | 402 +++++------
dr-3.0.4/dr/data/mussels.txt | 166 ++--
dr-3.0.4/dr/inst/doc/overview.Rnw | 33
dr-3.0.4/dr/inst/doc/overview.pdf | 1201 ++++++++++++++++------------------
dr-3.0.4/dr/man/dr.directions.Rd | 5
dr-3.0.4/dr/man/drop1.dr.Rd | 12
14 files changed, 1027 insertions(+), 996 deletions(-)
Path: /cran/updated | permanent link
More information about aroma.affymetrix at CRAN
Path: /cran/new | permanent link
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: RSiteSearch
Description: Alternative interfaces to RSiteSearch
Diff between RSiteSearch versions 1.0-3 dated 2009-05-15 and 1.0-4 dated 2009-06-29
RSiteSearch-1.0-3/RSiteSearch/NAMESPACE |only RSiteSearch-1.0-3/RSiteSearch/inst/brew/results.brew.html |only RSiteSearch-1.0-4/RSiteSearch/DESCRIPTION | 10 +- RSiteSearch-1.0-4/RSiteSearch/NEWS | 6 + RSiteSearch-1.0-4/RSiteSearch/R/HTML.RSiteSearch.R | 2 RSiteSearch-1.0-4/RSiteSearch/R/PackageSum2.R | 20 ++++ RSiteSearch-1.0-4/RSiteSearch/inst/brew/default |only RSiteSearch-1.0-4/RSiteSearch/inst/brew/iframe |only RSiteSearch-1.0-4/RSiteSearch/man/HTML.Rd | 4 RSiteSearch-1.0-4/RSiteSearch/man/PackageSum2.Rd | 66 ++++++++++++-- RSiteSearch-1.0-4/RSiteSearch/man/PackageSummary.Rd | 10 +- RSiteSearch-1.0-4/RSiteSearch/man/RSiteSearch.function.Rd | 3 RSiteSearch-1.0-4/RSiteSearch/man/hits.Rd | 1 RSiteSearch-1.0-4/RSiteSearch/man/sortRSiteSearch.Rd | 1 RSiteSearch-1.0-4/RSiteSearch/man/summary.RSiteSearch.Rd | 4 RSiteSearch-1.0-4/RSiteSearch/man/unionRSiteSearch.Rd | 3 16 files changed, 111 insertions(+), 19 deletions(-)
More information about RSiteSearch at CRAN
Path: /cran/updated | permanent link
Author: Lester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and
Mark Fitzgerald
Title: Provides a GUI to several statistical methods useful for causal
assessment.
Description: Using JGR, provides a GUI to several statistical methods -
scatterplot, boxplot, linear regression, generalized linear
regression, quantile, regression, conditional probability
calculations, and regression trees.
Diff between CADStat versions 2.1-17 dated 2009-01-13 and 2.1-21 dated 2009-06-29
CADStat-2.1-17/CADStat/R/bioinfer.JGR.R |only CADStat-2.1-17/CADStat/R/bioinfer1.JGR.r |only CADStat-2.1-17/CADStat/R/bioinfer2.JGR.r |only CADStat-2.1-17/CADStat/R/bioinfer3.JGR.r |only CADStat-2.1-17/CADStat/R/dup.sel.r |only CADStat-2.1-17/CADStat/R/get.duplicates.r |only CADStat-2.1-17/CADStat/R/get.mergedfile.r |only CADStat-2.1-17/CADStat/R/get.mismatch.r |only CADStat-2.1-17/CADStat/R/get.otu.jgr.r |only CADStat-2.1-17/CADStat/man/bioinfer.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer1.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer2.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer3.JGR.Rd |only CADStat-2.1-17/CADStat/man/dup.sel.Rd |only CADStat-2.1-17/CADStat/man/get.duplicates.Rd |only CADStat-2.1-17/CADStat/man/get.mergedfile.Rd |only CADStat-2.1-17/CADStat/man/get.mismatch.Rd |only CADStat-2.1-17/CADStat/man/get.otu.jgr.Rd |only CADStat-2.1-21/CADStat/DESCRIPTION | 33 ++++++++++++++----------- CADStat-2.1-21/CADStat/R/bioinfer.new.JGR.R |only CADStat-2.1-21/CADStat/R/buildresultsXML.R | 8 +++--- CADStat-2.1-21/CADStat/R/cor.JGR.R | 2 - CADStat-2.1-21/CADStat/R/gisdt.subset.R | 6 +++- CADStat-2.1-21/CADStat/R/zzz.R | 10 ++----- CADStat-2.1-21/CADStat/chm |only CADStat-2.1-21/CADStat/inst/.svn |only CADStat-2.1-21/CADStat/inst/doc/.svn |only CADStat-2.1-21/CADStat/inst/java/cadstat.jar |binary CADStat-2.1-21/CADStat/man/bioinfer.new.JGR.Rd |only 29 files changed, 32 insertions(+), 27 deletions(-)
More information about CADStat at CRAN
Path: /cran/updated | permanent link
Author: Holger Schabenberger
Title: Spatial count regression
Description: Fit spatial CAR count regression models using MCMC
Diff between spatcounts versions 1.0 dated 2009-06-08 and 1.1 dated 2009-06-29
DESCRIPTION | 8 ++++---- R/Clarketest.R | 3 +-- R/LogLike.R | 23 ++++++++++++++++++----- R/Vuongtest.R | 2 -- man/Clarketest.Rd | 4 ++-- man/DIC.Rd | 2 +- man/LogLike.Rd | 2 +- man/Vuongtest.Rd | 4 ++-- man/est.sc.Rd | 15 +++++++++------ man/spatcounts-package.Rd | 2 +- 10 files changed, 39 insertions(+), 26 deletions(-)
More information about spatcounts at CRAN
Path: /cran/updated | permanent link
More information about tolerance at CRAN
Path: /cran/new | permanent link
Author: Karline Soetaert
Diff between rootSolve versions 1.3 dated 2009-02-20 and 1.4 dated 2009-06-29
More information about rootSolve at CRAN
Title: Nonlinear root finding, equilibrium and steady-state analysis of
ordinary differential equations
Description: Routines to find the root of nonlinear functions, and to
perform steady-state and equilibrium analysis of ordinary
differential equations (ODE). Includes routines that: (1)
generate gradient and Jacobian matrices (full and banded), (2)
find roots of non-linear equations by the Newton-Raphson
method, (3) estimate steady-state conditions of a system of
(differential) equations in full, banded or sparse form, using
the Newton-Raphson method, or by dynamically running, (4) solve
the steady-state conditions for uni-and multicomponent 1-D,
2-D, and 3-D partial differential equations, that have been
converted to ODEs by numerical differencing (using the
method-of-lines approach). Includes fortran code.
rootSolve-1.3/rootSolve/R/Roots.r |only
rootSolve-1.3/rootSolve/R/runsteady.r |only
rootSolve-1.3/rootSolve/R/stode.r |only
rootSolve-1.3/rootSolve/R/stodes.r |only
rootSolve-1.3/rootSolve/demo/Jacobandroots.r |only
rootSolve-1.3/rootSolve/inst/doc/rootSolve.rnw |only
rootSolve-1.3/rootSolve/inst/dynload/anoxmod.r |only
rootSolve-1.4/rootSolve/DESCRIPTION | 42
rootSolve-1.4/rootSolve/NAMESPACE | 4
rootSolve-1.4/rootSolve/R/gradient.R |only
rootSolve-1.4/rootSolve/R/hessian.R |only
rootSolve-1.4/rootSolve/R/internal.R |only
rootSolve-1.4/rootSolve/R/jacobian.band.R |only
rootSolve-1.4/rootSolve/R/jacobian.full.R |only
rootSolve-1.4/rootSolve/R/multiroot.R |only
rootSolve-1.4/rootSolve/R/runsteady.R |only
rootSolve-1.4/rootSolve/R/steady.1D.R |only
rootSolve-1.4/rootSolve/R/steady.2D.R |only
rootSolve-1.4/rootSolve/R/steady.3D.R |only
rootSolve-1.4/rootSolve/R/steady.R |only
rootSolve-1.4/rootSolve/R/steady.band.R |only
rootSolve-1.4/rootSolve/R/stode.R |only
rootSolve-1.4/rootSolve/R/stodes.R |only
rootSolve-1.4/rootSolve/R/uniroot.all.R |only
rootSolve-1.4/rootSolve/demo/Jacobandroots.R |only
rootSolve-1.4/rootSolve/demo/Steadystate.R | 1
rootSolve-1.4/rootSolve/inst/CITATION |only
rootSolve-1.4/rootSolve/inst/doc/rootSolve.Rnw |only
rootSolve-1.4/rootSolve/inst/doc/rootSolve.pdf |49044 +++++++++++++------------
rootSolve-1.4/rootSolve/inst/doc/vignettes.bib | 349
rootSolve-1.4/rootSolve/inst/dynload/anoxmod.R |only
rootSolve-1.4/rootSolve/man/gradient.Rd | 70
rootSolve-1.4/rootSolve/man/hessian.Rd | 59
rootSolve-1.4/rootSolve/man/jacobian.band.Rd | 138
rootSolve-1.4/rootSolve/man/jacobian.full.Rd | 106
rootSolve-1.4/rootSolve/man/multiroot.1D.Rd |only
rootSolve-1.4/rootSolve/man/multiroot.Rd | 159
rootSolve-1.4/rootSolve/man/rootSolve.Rd | 64
rootSolve-1.4/rootSolve/man/runsteady.Rd | 425
rootSolve-1.4/rootSolve/man/steady.1D.Rd | 194
rootSolve-1.4/rootSolve/man/steady.2D.Rd | 206
rootSolve-1.4/rootSolve/man/steady.3D.Rd |only
rootSolve-1.4/rootSolve/man/steady.Rd | 111
rootSolve-1.4/rootSolve/man/steady.band.Rd | 127
rootSolve-1.4/rootSolve/man/stode.Rd | 432
rootSolve-1.4/rootSolve/man/stodes.Rd | 283
rootSolve-1.4/rootSolve/man/uniroot.all.Rd | 86
rootSolve-1.4/rootSolve/src/call_runsteady.c | 4
rootSolve-1.4/rootSolve/src/call_steady.c | 2
rootSolve-1.4/rootSolve/src/call_stsparse.c | 21
rootSolve-1.4/rootSolve/src/sparse.f | 411
rootSolve-1.4/rootSolve/src/sparsecoeff.f | 230
rootSolve-1.4/rootSolve/src/steady.f | 10
53 files changed, 28888 insertions(+), 23690 deletions(-)
Path: /cran/updated | permanent link
More information about rankhazard at CRAN
Path: /cran/new | permanent link
Author: Christian B. Pipper
Diff between multmod versions 0.3 dated 2009-06-25 and 0.4 dated 2009-06-29
More information about multmod at CRAN
Title: Testing of multiple outcomes
Description: Testing of multiple outcomes using i.i.d. decompositions
DESCRIPTION | 6 +++---
NEWS | 3 ++-
R/amtest.R | 2 +-
man/amtest.Rd | 10 ++++++----
man/mn6.9.Rd | 2 +-
5 files changed, 13 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Author: Martin Schlather
Diff between RandomFields versions 1.3.37 dated 2009-01-26 and 1.3.39 dated 2009-06-29
More information about RandomFields at CRAN
Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields;
conditional simulation; kriging
DESCRIPTION | 14 ++++++-----
src/MPP.cc | 2 -
src/RFsimu.cc | 6 ++--
src/RFsimu.h | 6 ++--
src/RandomFields.h | 4 +++
src/Xempvario.cc | 4 +--
src/auxiliary.cc | 66 +++++++++++++++++++++++++++++++++++++++++++++++++++++
7 files changed, 87 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Author: Juha Karvanen
Title: Independent component analysis using score functions from the
Pearson system
Description: The Pearson-ICA algorithm is a mutual information-based
method for blind separation of statistically independent source
signals. It has been shown that the minimization of mutual
information leads to iterative use of score functions, i.e.
derivatives of log densities. The Pearson system allows
adaptive modeling of score functions. The flexibility of the
Pearson system makes it possible to model a wide range of
source distributions including asymmetric distributions. The
algorithm is designed especially for problems with asymmetric
sources but it works for symmetric sources as well.
Diff between PearsonICA versions 1.2-3 dated 2008-10-10 and 1.2-4 dated 2009-06-29
DESCRIPTION | 36 ++++++++++++++++++++++-------------- 1 file changed, 22 insertions(+), 14 deletions(-)
More information about PearsonICA at CRAN
Path: /cran/updated | permanent link
Author: Martin Schlather
Diff between MarkedPointProcess versions 0.2.9 dated 2008-08-22 and 0.2.11 dated 2009-06-29
More information about MarkedPointProcess at CRAN
Title: Analysis of Marks of Marked Point Processes
Description: Non-parametric Analysis of the Marks of Marked Point
Processes
DESCRIPTION | 9 ++++++---
src/MPPanalyse.cc | 2 +-
src/MPPbasics.cc | 23 ++++++++++++++++++++---
3 files changed, 27 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Author: Juha Karvanen
Title: L-moments and quantile mixtures
Description: The Lmoments package contains functions to estimate
L-moments and trimmed L-moments from the data. The package also
contains functions to estimate the parameters of the normal
polynomial quantile mixture and the Cauchy polynomial quantile
mixture from L-moments and trimmed L-moments.
Diff between Lmoments versions 1.1-2 dated 2007-02-11 and 1.1-3 dated 2009-06-29
DESCRIPTION | 31 +++++++++++++++++-------------- inst/CITATION | 8 ++++---- inst/News | 5 ++++- man/Lmoments.Rd | 25 +++++++++++++++---------- man/cauchypoly.Rd | 6 +++--- man/covnormpoly4.Rd | 6 +++--- man/data2cauchypoly.Rd | 6 +++--- man/data2normpoly.Rd | 6 +++--- man/normpoly.Rd | 6 +++--- man/t1lmoments.Rd | 6 +++--- 10 files changed, 58 insertions(+), 47 deletions(-)
More information about Lmoments at CRAN
Path: /cran/updated | permanent link
Author: Philippe Grosjean
Diff between tcltk2 versions 1.0-8 dated 2009-04-24 and 1.0-9 dated 2009-06-28
More information about tcltk2 at CRAN
Title: Tcl/Tk Additions
Description: A series of additional Tk widgets with style and various
functions (under Windows: DDE exchange, access to the registry
and icon manipulation) to supplement the tcltk package.
tcltk2-1.0-8/tcltk2/BinaryFiles |only
tcltk2-1.0-8/tcltk2/R/winSystemFonts.R |only
tcltk2-1.0-8/tcltk2/cleanup |only
tcltk2-1.0-8/tcltk2/inst/doc |only
tcltk2-1.0-8/tcltk2/man/unix/winSystemFonts.Rd |only
tcltk2-1.0-8/tcltk2/man/windows/winSystemFonts.Rd |only
tcltk2-1.0-8/tcltk2/win/bin |only
tcltk2-1.0-8/tcltk2/win/src/winSystemFonts.c |only
tcltk2-1.0-8/tcltk2/win/tklibs/Tktable2.9 |only
tcltk2-1.0-8/tcltk2/win/tklibs/tile0.7.2 |only
tcltk2-1.0-8/tcltk2/win/tklibs/winico0.6/Winico06.dll |only
tcltk2-1.0-9/tcltk2/DESCRIPTION | 8
tcltk2-1.0-9/tcltk2/LICENSE | 1873 +++++++++---------
tcltk2-1.0-9/tcltk2/NAMESPACE | 177 -
tcltk2-1.0-9/tcltk2/NEWS | 49
tcltk2-1.0-9/tcltk2/R/tk2commands.R | 28
tcltk2-1.0-9/tcltk2/R/tk2fonts.R | 21
tcltk2-1.0-9/tcltk2/R/zzz.R | 42
tcltk2-1.0-9/tcltk2/TODO | 109 -
tcltk2-1.0-9/tcltk2/cleanup.win |only
tcltk2-1.0-9/tcltk2/configure.win | 11
tcltk2-1.0-9/tcltk2/inst/CITATION | 6
tcltk2-1.0-9/tcltk2/inst/tklibs/bwidget1.7/ChangeLog | 136 -
tcltk2-1.0-9/tcltk2/inst/tklibs/fonts.tcl | 127 -
tcltk2-1.0-9/tcltk2/man/tcltk2-package.Rd | 12
tcltk2-1.0-9/tcltk2/man/tk2fonts.Rd | 8
tcltk2-1.0-9/tcltk2/man/windows/tk2dde.Rd | 7
tcltk2-1.0-9/tcltk2/win/src/Makevars |only
tcltk2-1.0-9/tcltk2/win/src/Winico06.c |only
29 files changed, 1338 insertions(+), 1276 deletions(-)
Path: /cran/updated | permanent link
More information about svSweave at CRAN
Path: /cran/new | permanent link
More information about svUnit at CRAN
Path: /cran/new | permanent link
More information about svWidgets at CRAN
Path: /cran/new | permanent link
Author: Philippe Grosjean, Romain Francois & Kamil Barton
Title: SciViews GUI API - Miscellaneous functions
Description: Supporting functions for the GUI API (various utilitary
functions)
Diff between svMisc versions 0.9-46 dated 2009-01-23 and 0.9-48 dated 2009-06-28
DESCRIPTION | 29 +- NEWS | 10 R/Args.R | 3 R/CallTip.R | 3 R/Complete.R | 3 R/CompletePlus.R | 120 ++++------ R/Parse.R | 17 + R/Sys.tempdir.R | 3 R/Sys.userdir.R | 3 R/TempEnv.R | 3 R/addItems.R | 26 +- R/addTemp.R | 5 R/assignTemp.R | 2 R/captureAll.R | 36 +-- R/changeTemp.R | 3 R/clipsource.R | 7 R/compareRVersion.R | 3 R/def.R | 13 - R/descFun.R | 63 ++--- R/existsTemp.R | 2 R/getEnvironment.R | 3 R/getTemp.R | 5 R/guiCmd.R | 17 - R/helpSearchWeb.R | 4 R/isAqua.R | 3 R/isHelp.R | 5 R/isMac.R | 3 R/isRgui.R | 3 R/isSDI.R | 5 R/isWin.R | 3 R/listMethods.R | 19 - R/listTypes.R | 10 R/objBrowse.R | 9 R/objClear.R | 6 R/objDir.R | 3 R/objInfo.R | 11 R/objList.R | 585 ++++++++++++++++++++++++++-------------------------- R/objMenu.R | 43 +-- R/objSearch.R | 10 R/progress.R | 15 - R/r.R | 8 R/rmTemp.R | 3 R/svMisc-internal.R | 78 ++++-- R/tempvar.R | 4 man/captureAll.Rd | 4 man/objBrowse.Rd | 21 + 46 files changed, 653 insertions(+), 581 deletions(-)
More information about svMisc at CRAN
Path: /cran/updated | permanent link
Author: Heloise Lavigne and Aurelien Proye and Jean-Pierre Gattuso.
Portions of code and/or corrections were contributed by
Jean-Marie Epitalon, Andreas Hofmann, Bernard Gentili, Jim Orr
and Karline Soetaert
Title: Calculates parameters of the seawater carbonate system
Description: Calculates parameters of the seawater carbonate system
Diff between seacarb versions 2.1.2 dated 2009-05-25 and 2.1.3 dated 2009-06-28
seacarb-2.1.2/seacarb/R/pHinsi.R |only seacarb-2.1.2/seacarb/data/seacarb_test.txt |only seacarb-2.1.3/seacarb/ChangeLog | 14 ++++++++++++++ seacarb-2.1.3/seacarb/DESCRIPTION | 10 ++++------ seacarb-2.1.3/seacarb/R/carb.R | 10 +++++----- seacarb-2.1.3/seacarb/R/pHinsi.r |only seacarb-2.1.3/seacarb/README |only seacarb-2.1.3/seacarb/data/seacarb_test_P0.txt |only seacarb-2.1.3/seacarb/data/seacarb_test_P300.txt |only seacarb-2.1.3/seacarb/man/carb.Rd | 17 +++++++++-------- seacarb-2.1.3/seacarb/man/pCa.Rd | 3 +++ seacarb-2.1.3/seacarb/man/pTA.Rd | 3 +-- seacarb-2.1.3/seacarb/man/pgas.Rd | 3 +-- seacarb-2.1.3/seacarb/man/pmix.Rd | 3 +-- seacarb-2.1.3/seacarb/man/ppH.Rd | 3 +-- seacarb-2.1.3/seacarb/man/seacarb_test_P0.Rd |only seacarb-2.1.3/seacarb/man/seacarb_test_P300.Rd |only 17 files changed, 39 insertions(+), 27 deletions(-)
More information about seacarb at CRAN
Path: /cran/updated | permanent link
More information about svDialogs at CRAN
Path: /cran/new | permanent link
Author: Richard Bourgon
Diff between intervals versions 0.12.1 dated 2009-06-14 and 0.12.2 dated 2009-06-28
More information about intervals at CRAN
Title: Tools for working with points and intervals
Description: Tools for working with and comparing sets of points and
intervals.
DESCRIPTION | 10 +++++-----
NAMESPACE | 7 ++++++-
man/Intervals_virtual_or_numeric-class.Rd |only
3 files changed, 11 insertions(+), 6 deletions(-)
Path: /cran/updated | permanent link
Author: Patrick E. Meyer
Title: Information-Theoretic Measures
Description: This package implements various measures of information
theory based on several implemented entropy estimators.
Diff between infotheo versions 1.0.1 dated 2009-06-26 and 1.0.2 dated 2009-06-28
CHANGES | 3 ++- DESCRIPTION | 6 +++--- src/entropy.cpp | 4 ++-- 3 files changed, 7 insertions(+), 6 deletions(-)
More information about infotheo at CRAN
Path: /cran/updated | permanent link
Author: Søren Højsgaard
Diff between gRbase versions 1.1.0 dated 2009-04-26 and 1.1.2 dated 2009-06-28
More information about gRbase at CRAN
Title: A package for graphical modelling in R
Description: The gRbase package provides certain general constructs
which are used by other graphical modelling packages. This
includes 1) the concept of gmData (graphical meta data), 2)
several graph algorithms 3) facilities for table operations, 4)
functions for testing for conditional independence. gRbase also
illustrates how hierarchical log-linear models (hllm) may be
implemented.
gRbase-1.1.0/gRbase/src/triangmcwh.c |only
gRbase-1.1.2/gRbase/ChangeLog | 11 ++
gRbase-1.1.2/gRbase/DESCRIPTION | 6 -
gRbase-1.1.2/gRbase/R/GraphAlgo-mcs.R | 2
gRbase-1.1.2/gRbase/R/GraphAlgo-rip.R | 130 +++++++++++++++-----------------
gRbase-1.1.2/gRbase/inst/doc/gRbase.pdf |binary
gRbase-1.1.2/gRbase/src/triangmcwh2.c |only
7 files changed, 74 insertions(+), 75 deletions(-)
Path: /cran/updated | permanent link
Author: Reinhard Harter, Kurt Hornik and Stefan Theussl
Title: Symphony in R
Description: An R interface to the SYMPHONY MILP solver (version
5.1.10).
Diff between Rsymphony versions 0.1-8 dated 2009-03-19 and 0.1-9 dated 2009-06-28
DESCRIPTION | 9 src/R_symphony.cc | 3 src/SYMPHONY/BuildTools/coin.m4 | 105 + src/SYMPHONY/BuildTools/commit_new_release | 51 src/SYMPHONY/BuildTools/prepare_new_release | 648 ++++++-- src/SYMPHONY/Cgl/MSVisualStudio/v8/libCgl/libCgl.vcproj | 1 src/SYMPHONY/Cgl/configure | 20 src/SYMPHONY/Cgl/configure.ac | 4 src/SYMPHONY/Cgl/src/CglPreProcess/CglPreProcess.cpp | 39 src/SYMPHONY/Cgl/src/CglProbing/CglProbing.cpp | 21 src/SYMPHONY/Clp/MSVisualStudio/v8/clp/clp.vcproj | 1 src/SYMPHONY/Clp/MSVisualStudio/v8/libClp/libClp.vcproj | 1 src/SYMPHONY/Clp/MSVisualStudio/v9 |only src/SYMPHONY/Clp/configure | 20 src/SYMPHONY/Clp/configure.ac | 4 src/SYMPHONY/Clp/src/ClpPackedMatrix.cpp | 2 src/SYMPHONY/Clp/src/ClpPresolve.cpp | 30 src/SYMPHONY/Clp/src/ClpSimplex.cpp | 12 src/SYMPHONY/Clp/src/ClpSimplexDual.cpp | 164 +- src/SYMPHONY/Clp/src/ClpSimplexPrimal.cpp | 5 src/SYMPHONY/CoinUtils/AUTHORS | 5 src/SYMPHONY/CoinUtils/MSVisualStudio/v8/libCoinUtils/libCoinUtils.vcproj | 1 src/SYMPHONY/CoinUtils/MSVisualStudio/v9 |only src/SYMPHONY/CoinUtils/configure | 20 src/SYMPHONY/CoinUtils/configure.ac | 4 src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp | 2 src/SYMPHONY/CoinUtils/src/CoinLpIO.cpp | 6 src/SYMPHONY/CoinUtils/src/CoinPackedMatrix.cpp | 2 src/SYMPHONY/CoinUtils/src/CoinPresolveDoubleton.cpp | 2 src/SYMPHONY/CoinUtils/src/CoinPresolveDual.cpp | 3 src/SYMPHONY/CoinUtils/src/CoinPresolveTripleton.cpp | 3 src/SYMPHONY/Data/Sample/configure | 20 src/SYMPHONY/Data/Sample/configure.ac | 4 src/SYMPHONY/Externals | 20 src/SYMPHONY/FlopC++/configure | 137 + src/SYMPHONY/FlopC++/configure.ac | 2 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsi/libOsi.vcproj | 1 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiCbc/libOsiCbc.vcproj | 1 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiClp/libOsiClp.vcproj | 1 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiSym/libOsiSym.vcproj | 4 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiVol/libOsiVol.vcproj | 1 src/SYMPHONY/Osi/src/OsiClp/OsiClpSolverInterface.cpp | 6 src/SYMPHONY/Osi/src/OsiCuts.hpp | 9 src/SYMPHONY/Osi/src/OsiPresolve.cpp | 4 src/SYMPHONY/SYMPHONY/MSVisualStudio/sym.mak | 764 ++++------ src/SYMPHONY/SYMPHONY/configure | 20 src/SYMPHONY/SYMPHONY/configure.ac | 2 src/SYMPHONY/ThirdParty/Blas/configure | 20 src/SYMPHONY/ThirdParty/Blas/configure.ac | 4 src/SYMPHONY/ThirdParty/Glpk/INSTALL.Glpk | 8 src/SYMPHONY/ThirdParty/Glpk/Makefile.am | 10 src/SYMPHONY/ThirdParty/Glpk/Makefile.in | 80 - src/SYMPHONY/ThirdParty/Glpk/configure | 9 src/SYMPHONY/ThirdParty/Glpk/configure.ac | 9 src/SYMPHONY/ThirdParty/Glpk/get.Glpk | 2 src/SYMPHONY/ThirdParty/Glpk/glpk.patch | 8 src/SYMPHONY/ThirdParty/Lapack/Makefile.am | 2 src/SYMPHONY/ThirdParty/Lapack/configure | 117 - src/SYMPHONY/ThirdParty/Lapack/configure.ac | 39 src/SYMPHONY/configure | 20 src/SYMPHONY/configure.ac | 4 61 files changed, 1612 insertions(+), 904 deletions(-)
More information about Rsymphony at CRAN
Path: /cran/updated | permanent link
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.93 dated 2009-05-25 and 0.94 dated 2009-06-28
DESCRIPTION | 8 - R/DanielPlot.R | 2 R/FrF2.R | 30 +++- R/MEPlot.R | 14 +- R/blockpick.R | 12 + R/leftadjust.R | 12 + R/pb.R | 3 R/remodel.R | 28 ++-- R/splitpick.R | 10 + R/utilcat.R | 75 +++++++++-- inst/NEWS | 23 +++ man/FrF2.Rd | 304 +++++++++++------------------------------------ man/IAPlot.Rd | 23 ++- man/block.Rd |only man/estimable.2fis.Rd |only man/pb.Rd | 22 +++ man/splitplot.Rd |only tests/FrF2test.R | 4 tests/FrF2test.Rout.save | 66 ++++++++-- 19 files changed, 328 insertions(+), 308 deletions(-)
More information about FrF2 at CRAN
Path: /cran/updated | permanent link
More information about ElectroGraph at CRAN
Path: /cran/new | permanent link
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.2 dated 2009-05-27 and 0.3 dated 2009-06-28
DESCRIPTION | 12 +++--- R/fac.design.R | 3 + R/oa.design.R | 3 + inst/NEWS | 7 +++ man/DoE.base-package.Rd | 1 man/class-design.Rd | 46 +++++++++++++++---------- man/export.design.Rd | 11 ++---- man/oa.design.Rd | 85 +++++++++++++++++++++++++++++++++++++----------- 8 files changed, 117 insertions(+), 51 deletions(-)
More information about DoE.base at CRAN
Path: /cran/updated | permanent link
Author: Thomas Petzoldt
Title: Simulation of ecological (and other) dynamic systems
Description: simecol is an object oriented framework to simulate
ecological (and other) dynamic systems. It can be used for
differential equations, individual-based (or agent-based) and
other models as well. The package helps to organize scenarios
(avoids copy and paste) and improves readability and usability
of code.
Diff between simecol versions 0.6-6 dated 2009-02-26 and 0.6-8 dated 2009-06-27
simecol-0.6-6/simecol/inst/doc/petzoldt_jss.bib |only simecol-0.6-6/simecol/inst/examples/dynload/clotka.cpp |only simecol-0.6-6/simecol/work |only simecol-0.6-8/simecol/DESCRIPTION | 24 simecol-0.6-8/simecol/R/fitOdeModel.R | 23 simecol-0.6-8/simecol/R/iteration.R | 31 simecol-0.6-8/simecol/R/ssqOdeModel.R | 33 simecol-0.6-8/simecol/data/lv3.rda |binary simecol-0.6-8/simecol/inst/FAQ.txt | 17 simecol-0.6-8/simecol/inst/NEWS | 10 simecol-0.6-8/simecol/inst/THANKS | 29 simecol-0.6-8/simecol/inst/ToDo.txt | 14 simecol-0.6-8/simecol/inst/doc/simecol-howtos.Rnw | 574 ++++++++++- simecol-0.6-8/simecol/inst/doc/simecol-howtos.pdf |binary simecol-0.6-8/simecol/inst/doc/simecol-introduction.Rnw | 5 simecol-0.6-8/simecol/inst/doc/simecol-introduction.pdf |binary simecol-0.6-8/simecol/inst/doc/simecol.bib |only simecol-0.6-8/simecol/inst/doc/vignette.cls |only simecol-0.6-8/simecol/inst/examples/dynload/simecol_clotka.R | 5 simecol-0.6-8/simecol/inst/examples/dynload/test_clotka.R | 2 simecol-0.6-8/simecol/inst/examples/fitOdeModel |only simecol-0.6-8/simecol/inst/examples/lv.R | 21 simecol-0.6-8/simecol/inst/examples/lv3.R | 11 simecol-0.6-8/simecol/man/as.simObj.Rd | 7 simecol-0.6-8/simecol/man/fitOdeModel.Rd | 8 simecol-0.6-8/simecol/man/iteration.Rd | 52 simecol-0.6-8/simecol/man/odeModel.Rd | 60 + simecol-0.6-8/simecol/man/plot-methods.Rd | 12 simecol-0.6-8/simecol/man/simecol-package.Rd | 96 + simecol-0.6-8/simecol/man/ssqOdeModel.Rd | 30 30 files changed, 886 insertions(+), 178 deletions(-)
More information about simecol at CRAN
Path: /cran/updated | permanent link
More information about openNLPmodels.es at CRAN
Path: /cran/new | permanent link
Author: Ingo Feinerer, Kurt Hornik
Title: openNLP Interface
Description: An interface to openNLP (http://opennlp.sourceforge.net/),
a collection of natural language processing tools including a
sentence detector, tokenizer, pos-tagger, shallow and full
syntactic parser, and named-entity detector, using the Maxent
Java package for training and using maximum entropy models.
Diff between openNLP versions 0.0-6 dated 2008-04-14 and 0.0-7 dated 2009-06-27
openNLP-0.0-6/openNLP/inst/doc/openNLP.tex |only openNLP-0.0-6/openNLP/inst/java/maxent-2.4.0.jar |only openNLP-0.0-6/openNLP/inst/java/opennlp-tools-1.3.0.jar |only openNLP-0.0-7/openNLP/DESCRIPTION | 25 +++--- openNLP-0.0-7/openNLP/NAMESPACE | 5 - openNLP-0.0-7/openNLP/R/model.R | 7 + openNLP-0.0-7/openNLP/R/onload.R | 8 - openNLP-0.0-7/openNLP/R/postag.R | 65 +++++++++++----- openNLP-0.0-7/openNLP/R/sentdetect.R | 41 +++++++--- openNLP-0.0-7/openNLP/R/tokenizer.R | 43 +++++++--- openNLP-0.0-7/openNLP/R/transform.R | 12 ++ openNLP-0.0-7/openNLP/R/utils.R |only openNLP-0.0-7/openNLP/inst/doc/openNLP.Rnw | 48 +++++++---- openNLP-0.0-7/openNLP/inst/doc/openNLP.pdf |binary openNLP-0.0-7/openNLP/inst/java/maxent-2.5.2.jar |only openNLP-0.0-7/openNLP/inst/java/opennlp-tools-1.4.3.jar |only openNLP-0.0-7/openNLP/man/sentdetect.Rd | 22 +++-- openNLP-0.0-7/openNLP/man/tagPOS.Rd | 24 +++-- openNLP-0.0-7/openNLP/man/tmSentDetect.Rd | 4 openNLP-0.0-7/openNLP/man/tmTagPOS.Rd | 4 openNLP-0.0-7/openNLP/man/tmTokenize.Rd | 4 openNLP-0.0-7/openNLP/man/tokenize.Rd | 25 +++--- 22 files changed, 221 insertions(+), 116 deletions(-)
More information about openNLP at CRAN
Path: /cran/updated | permanent link
More information about openNLPmodels.en at CRAN
Path: /cran/new | permanent link
More information about foreach at CRAN
Path: /cran/new | permanent link
More information about iterators at CRAN
Path: /cran/new | permanent link
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington With contributions from
Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 4.2.2 dated 2009-05-19 and 4.3 dated 2009-06-27
ensembleBMA-4.2.2/ensembleBMA/R/ensembleItime.nsembleData.R |only ensembleBMA-4.3/ensembleBMA/CHANGELOG | 3 ensembleBMA-4.3/ensembleBMA/DESCRIPTION | 8 ensembleBMA-4.3/ensembleBMA/R/controlBMAgamma.R | 6 ensembleBMA-4.3/ensembleBMA/R/controlBMAgamma0.R | 6 ensembleBMA-4.3/ensembleBMA/R/ensembleItime.ensembleData.R |only ensembleBMA-4.3/ensembleBMA/R/fitBMAgamma.R | 88 ++- ensembleBMA-4.3/ensembleBMA/R/fitBMAgamma0.R | 280 +++--------- ensembleBMA-4.3/ensembleBMA/man/controlBMAgamma.Rd | 10 ensembleBMA-4.3/ensembleBMA/man/controlBMAgamma0.Rd | 10 10 files changed, 149 insertions(+), 262 deletions(-)
More information about ensembleBMA at CRAN
Path: /cran/updated | permanent link
More information about RSiena at CRAN
Path: /cran/new | permanent link
More information about doMC at CRAN
Path: /cran/new | permanent link
Author: Julian Taylor
Diff between wgaim versions 0.2-2 dated 2009-05-24 and 0.3 dated 2009-06-26
More information about wgaim at CRAN
Title: Whole Genome Average Interval Mapping for QTL detection using
mixed models
Description: This package integrates sophisticated mixed modelling
methods with a whole genome approach to detecting significant
QTL's in linkage maps.
DESCRIPTION | 8 +++---
R/wgaim.R | 63 ++++++++++++++++++++++++++++++++----------------
man/link.map.cross.Rd | 18 ++++++++-----
man/link.map.default.Rd | 11 ++++----
man/link.map.wgaim.Rd | 9 +++---
5 files changed, 68 insertions(+), 41 deletions(-)
Path: /cran/updated | permanent link
Author: Roger Bivand and Danlin Yu
Title: Geographically weighted regression
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Diff between spgwr versions 0.5-12 dated 2009-06-18 and 0.6-2 dated 2009-06-26
ChangeLog | 18 +++ DESCRIPTION | 8 - R/gwr.R | 231 +++++++++++++++++++++++++++++++++++--------------- inst/ChangeLog | 9 + man/LMZ.F3GWR.test.Rd | 8 + man/ggwr.Rd | 3 man/gwr.Rd | 11 +- man/gwr.cv.Rd | 2 8 files changed, 209 insertions(+), 81 deletions(-)
More information about spgwr at CRAN
Path: /cran/updated | permanent link
Author: Tuomas Rajala
Title: Segregation measures for multitype spatial point patterns
Description: Functionals and indices for measuring segregation in
multitype spatial point patterns with graph based neighbourhood
description. Included indices: Mingling, Shannon, Simpson (also
the non-spatial) Included functionals: Mingling, Shannon,
Simpson, ISAR. Included neighbourhoods: Geometric, k-nearest
neighbours, Gabriel, Delauney.
Diff between spatialsegregation versions 1.93 dated 2009-03-10 and 2.05 dated 2009-06-26
spatialsegregation-1.93/spatialsegregation/src/dists.cpp |only spatialsegregation-1.93/spatialsegregation/src/dists.h |only spatialsegregation-2.05/spatialsegregation/DESCRIPTION | 24 +- spatialsegregation-2.05/spatialsegregation/R/fclass.R | 4 spatialsegregation-2.05/spatialsegregation/R/fun.R | 53 ++++ spatialsegregation-2.05/spatialsegregation/R/isar.R | 19 + spatialsegregation-2.05/spatialsegregation/R/mingling.R | 4 spatialsegregation-2.05/spatialsegregation/R/modifiers.R | 1 spatialsegregation-2.05/spatialsegregation/R/shannon.R | 20 + spatialsegregation-2.05/spatialsegregation/change.log | 24 ++ spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-ISAR.Rd | 3 spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-mingling.Rd | 2 spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-segregationFun.Rd | 6 spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-shannon.Rd | 11 - spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-simpson.Rd | 2 spatialsegregation-2.05/spatialsegregation/src/Fun.cpp | 2 spatialsegregation-2.05/spatialsegregation/src/Graph.cpp | 109 +++++----- spatialsegregation-2.05/spatialsegregation/src/Graph.h | 9 spatialsegregation-2.05/spatialsegregation/src/Pp.cpp | 51 ++++ spatialsegregation-2.05/spatialsegregation/src/Pp.h | 14 + spatialsegregation-2.05/spatialsegregation/src/isar.cpp | 73 ++++++ spatialsegregation-2.05/spatialsegregation/src/isar.h | 2 spatialsegregation-2.05/spatialsegregation/src/other.cpp |only spatialsegregation-2.05/spatialsegregation/src/other.h |only spatialsegregation-2.05/spatialsegregation/src/rfun.cpp | 19 + spatialsegregation-2.05/spatialsegregation/src/rgraph.cpp | 16 - spatialsegregation-2.05/spatialsegregation/src/shannon.cpp | 72 ++++++ spatialsegregation-2.05/spatialsegregation/src/shannon.h | 1 28 files changed, 413 insertions(+), 128 deletions(-)
More information about spatialsegregation at CRAN
Path: /cran/updated | permanent link
Author: Jerome Sueur
Diff between seewave versions 1.5.4 dated 2009-03-27 and 1.5.5 dated 2009-06-26
More information about seewave at CRAN
Title: Time wave analysis and graphical representation
Description: seewave provides functions for analysing, manipulating,
displaying, editing and synthesizing time waves (particularly
sound). This package processes time analysis (oscillograms and
envelopes), spectral content, resonance quality factor,
entropy, cross correlation and autocorrelation, zero-crossing,
dominant frequency, analytic signal, frequency coherence, 2D
and 3D spectrograms and many other analyses.
DESCRIPTION | 8
NEWS |only
R/seewave.r |10837 ++++++++++++++++++++++++------------------------
inst/doc/seewave_IO.pdf | 1364 +++---
inst/doc/seewave_IO.rnw | 19
man/H.Rd | 126
man/Q.Rd | 150
man/addsilw.Rd | 100
man/afilter.Rd | 112
man/ama.Rd | 136
man/attenuation.Rd | 108
man/autoc.Rd | 134
man/ccoh.Rd | 216
man/ceps.Rd | 198
man/cepstro.Rd | 174
man/coh.Rd | 126
man/convSPL.Rd | 96
man/corenv.Rd | 180
man/corspec.Rd | 216
man/covspectro.Rd | 180
man/crest.Rd |only
man/csh.Rd | 124
man/cutw.Rd | 116
man/dBscale.Rd | 140
man/dBweight.Rd |only
man/deletew.Rd | 112
man/dfreq.Rd | 122
man/diffenv.Rd | 164
man/diffspec.Rd | 194
man/diffwave.Rd | 142
man/dynspec.rd | 212
man/echo.rd | 130
man/env.Rd | 142
man/export.Rd | 94
man/fadew.rd | 112
man/fdoppler.rd | 138
man/ffilter.Rd | 148
man/field.rd | 138
man/fir.Rd | 166
man/ftwindow.Rd | 100
man/fund.Rd | 128
man/hilbert.Rd | 88
man/ifreq.Rd | 164
man/lfs.Rd | 112
man/listen.Rd | 94
man/meanspec.Rd | 256 -
man/mel.Rd | 108
man/moredB.Rd | 78
man/mutew.Rd | 112
man/noise.Rd | 88
man/orni.Rd | 52
man/oscillo.Rd | 240 -
man/oscilloST.Rd | 136
man/pastew.Rd | 136
man/peewit.Rd | 52
man/pellucens.Rd | 68
man/pulse.Rd | 78
man/repw.rd | 80
man/resamp.Rd | 80
man/revw.Rd | 108
man/rmam.Rd | 98
man/rmoffset.Rd | 86
man/rms.Rd |only
man/savewav.Rd | 100
man/seewave.internal.rd | 66
man/seewave.package.Rd | 87
man/setenv.rd | 124
man/sfm.Rd | 92
man/sh.Rd | 108
man/sheep.Rd | 70
man/simspec.Rd | 182
man/spec.Rd | 278 -
man/specprop.Rd | 192
man/spectro.Rd | 315 -
man/spectro3D.Rd | 162
man/synth.Rd | 202
man/th.Rd | 128
man/tico.Rd | 52
man/timer.Rd | 106
man/wasp.rd | 202
man/wf.Rd | 6
man/zapsilw.rd | 90
man/zc.rd | 146
83 files changed, 11254 insertions(+), 10870 deletions(-)
Path: /cran/updated | permanent link
Author: Timothy H. Keitt
Diff between rgdal versions 0.6-8 dated 2009-04-30 and 0.6-9 dated 2009-06-26
More information about rgdal at CRAN
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
ChangeLog | 37 +++++++++++
DESCRIPTION | 8 +-
R/ogr.R | 15 ++++
R/ogr_sp.R | 44 +++++++++++--
configure.win | 11 +--
inst/ChangeLog | 44 +++++++++++++
inst/README.windows | 10 +--
inst/vectors/test_trk2.gpx |only
inst/vectors/trin_inca_pl03.dbf |only
inst/vectors/trin_inca_pl03.shp |only
inst/vectors/trin_inca_pl03.shx |only
man/project.Rd | 2
man/readOGR.Rd | 16 ++++-
src/ogr_geom.cpp | 126 ++++++++++++++++++++++++++--------------
src/ogrsource.cpp | 25 +++++++
15 files changed, 271 insertions(+), 67 deletions(-)
Path: /cran/updated | permanent link
Author: William Revelle
Diff between psych versions 1.0-72 dated 2009-06-02 and 1.0-74 dated 2009-06-26
More information about psych at CRAN
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale
construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. Functions for simulating particular item and test
structures are included. Several functions serve as a useful
front end for structural equation modeling. For more
information, see the personality-project.org/r webpage.
CHANGES | 19
DESCRIPTION | 8
NAMESPACE | 2
R/ICLUST.R | 10
R/ICLUST.cluster.R | 245
R/VSS.R | 2
R/cluster.cor.R | 5
R/cluster.loadings.R | 10
R/cor.plot.R | 2
R/fa.R | 67
R/factor.stats.R | 3
R/factor.wls.R | 17
R/mat.plot.R |only
R/mat.sort.R |only
R/phi.demo.R | 2
R/print.psych.omega.R | 4
R/read.clipboard.csv.R | 11
R/schmid.R | 28
R/sim.structural.R | 5
R/super.matrix.R | 11
R/test.psych.r | 9
fa.indeterm.r |only
factor.indeterm.r |only
inst/NEWS | 14
inst/doc/all.bib | 146
inst/doc/overview.Rnw | 107
inst/doc/overview.pdf |22142 +++++++++++++++++++++++----------------------
inst/doc/psych_for_sem.pdf | 5758 +++++------
man/ICLUST.Rd | 38
man/cluster.loadings.Rd | 3
man/cor.plot.Rd | 6
man/fa.Rd | 19
man/mat.sort.Rd |only
man/omega.Rd | 13
man/phi.demo.Rd | 5
man/read.clipboard.Rd | 6
man/schmid.Rd | 6
man/sim.structural.Rd | 3
man/structure.list.Rd | 2
39 files changed, 15163 insertions(+), 13565 deletions(-)
Path: /cran/updated | permanent link
Author: Sven Adler
Title: WA, WA-PLS, MW and POM for paleolimnology
Description: This package contains functions for paleolimnology -
wa-regression (see also package analogue by G. Simpson!),
wa-pls and the mowing-window approch. The function palplot
allows a first plot of the data including a trend analysis. The
pom function is just a first test version.
Diff between paltran versions 1.0-0 dated 2008-05-05 and 1.1 dated 2009-06-26
paltran-1.0-0/paltran/R/best.wapls.R |only paltran-1.0-0/paltran/R/mwtraf.R |only paltran-1.0-0/paltran/data/age_dud.rda |only paltran-1.0-0/paltran/man/age_dud.Rd |only paltran-1.0-0/paltran/man/best.wapls.Rd |only paltran-1.0-0/paltran/man/mwtraf.Rd |only paltran-1.1/paltran/DESCRIPTION | 33 paltran-1.1/paltran/R/mw.R |only paltran-1.1/paltran/R/palplot.R | 266 +++++-- paltran-1.1/paltran/R/pom.R | 1008 ++++++++++++++++++++--------- paltran-1.1/paltran/R/wa.R | 811 +++++++++++++++++------ paltran-1.1/paltran/R/wapls.R | 987 ++++++++++++++++++++-------- paltran-1.1/paltran/data/age.dud.rda |only paltran-1.1/paltran/data/dud.df.rda |binary paltran-1.1/paltran/data/train_env.MV.rda |binary paltran-1.1/paltran/data/train_set.MV.rda |binary paltran-1.1/paltran/man/age.dud.Rd |only paltran-1.1/paltran/man/dud.df.Rd | 30 paltran-1.1/paltran/man/mw.Rd |only paltran-1.1/paltran/man/palplot.Rd | 96 +- paltran-1.1/paltran/man/paltran-package.Rd |only paltran-1.1/paltran/man/pom.Rd | 118 +-- paltran-1.1/paltran/man/train_env.MV.Rd | 21 paltran-1.1/paltran/man/train_set.MV.Rd | 24 paltran-1.1/paltran/man/wa.Rd | 101 +- paltran-1.1/paltran/man/wapls.Rd | 100 +- 26 files changed, 2453 insertions(+), 1142 deletions(-)
More information about paltran at CRAN
Path: /cran/updated | permanent link
Author: Sebastien Dejean, Ignacio Gonzalez and Kim-Anh Le Cao
Title: Integrate Omics data project
Description: The package supplies two efficients nethodologies:
regularized CCA and sparse PLS to unravel relationships between
two heterogeneous data sets of size (nxp) and (nxq) where the p
and q variables are measured on the same samples or individuals
n. These data may come from high throughput technologies, such
as omics data, among which transcriptomics, metabolomics or
proteomics data that require an integrative or joint analysis.
However, integrOmics can also be applied to any other large
data sets where p+q>>n. rCCA is a regularized version of CCA to
deal with the large number of variables. sPLS allows variable
selection in a one step procedure and two frameworks are
proposed: regression and canonical analysis. Numerous graphical
outputs are provided to help interpreting the results.
Diff between integrOmics versions 1.0 dated 2009-05-17 and 2.1 dated 2009-06-26
integrOmics-1.0/integrOmics/R/img.estim.regul.R |only integrOmics-1.0/integrOmics/R/print.pls.R |only integrOmics-1.0/integrOmics/R/print.summary.R |only integrOmics-1.0/integrOmics/R/rcc.default.R |only integrOmics-1.0/integrOmics/man/img.estim.regul.Rd |only integrOmics-1.0/integrOmics/man/rCCAsPLS-package.Rd |only integrOmics-2.1/integrOmics/DESCRIPTION | 28 integrOmics-2.1/integrOmics/NAMESPACE | 36 integrOmics-2.1/integrOmics/R/estim.regul.R | 8 integrOmics-2.1/integrOmics/R/image.estim.regul.R |only integrOmics-2.1/integrOmics/R/imgCor.R | 4 integrOmics-2.1/integrOmics/R/plotIndiv.R | 251 +++--- integrOmics-2.1/integrOmics/R/plotVar.R | 738 +++++++++---------- integrOmics-2.1/integrOmics/R/pls.R | 12 integrOmics-2.1/integrOmics/R/predict.R | 130 +-- integrOmics-2.1/integrOmics/R/print.methods.R |only integrOmics-2.1/integrOmics/R/rcc.R | 179 ++-- integrOmics-2.1/integrOmics/R/rccNet.R |only integrOmics-2.1/integrOmics/R/spls.R | 399 +++++----- integrOmics-2.1/integrOmics/R/summary.R | 443 +++++------ integrOmics-2.1/integrOmics/R/valid.R | 72 + integrOmics-2.1/integrOmics/man/cim.Rd | 9 integrOmics-2.1/integrOmics/man/estim.regul.Rd | 6 integrOmics-2.1/integrOmics/man/image.estim.regul.Rd |only integrOmics-2.1/integrOmics/man/imgCor.Rd | 7 integrOmics-2.1/integrOmics/man/jet.colors.Rd | 2 integrOmics-2.1/integrOmics/man/linnerud.Rd | 12 integrOmics-2.1/integrOmics/man/liver.toxicity.Rd | 16 integrOmics-2.1/integrOmics/man/multidrug.Rd | 30 integrOmics-2.1/integrOmics/man/nipals.Rd | 2 integrOmics-2.1/integrOmics/man/nutrimouse.Rd | 18 integrOmics-2.1/integrOmics/man/plotIndiv.Rd | 26 integrOmics-2.1/integrOmics/man/plotVar.Rd | 22 integrOmics-2.1/integrOmics/man/pls.Rd | 17 integrOmics-2.1/integrOmics/man/predict.Rd | 20 integrOmics-2.1/integrOmics/man/print.methods.Rd |only integrOmics-2.1/integrOmics/man/rcc-internal.Rd | 2 integrOmics-2.1/integrOmics/man/rcc.Rd | 9 integrOmics-2.1/integrOmics/man/rccNet.Rd |only integrOmics-2.1/integrOmics/man/s.match.Rd | 103 +- integrOmics-2.1/integrOmics/man/scatterutil.Rd | 16 integrOmics-2.1/integrOmics/man/spls.Rd | 19 integrOmics-2.1/integrOmics/man/summary.Rd | 80 -- integrOmics-2.1/integrOmics/man/valid.Rd | 46 - integrOmics-2.1/integrOmics/man/vip.Rd | 2 45 files changed, 1387 insertions(+), 1377 deletions(-)
More information about integrOmics at CRAN
Path: /cran/updated | permanent link
Author: Patrick E. Meyer
Title: Information-Theoretic Measures
Description: This package implements various measures of information
theory based on several implemented entropy estimators.
Diff between infotheo versions 1.0.0 dated 2009-06-25 and 1.0.1 dated 2009-06-26
DESCRIPTION | 10 +++++----- src/entropy.cpp | 4 ++-- 2 files changed, 7 insertions(+), 7 deletions(-)
More information about infotheo at CRAN
Path: /cran/updated | permanent link
Author: Vinzenz Erhardt
Title: Zero Inflated Generalized Poisson (ZIGP) regression models
Description: Fit, analyze and compare GP, ZIP and ZIGP regression
models
Diff between ZIGP versions 3.5 dated 2009-05-13 and 3.6 dated 2009-06-26
ZIGP-3.5/ZIGP/R/FM.r |only ZIGP-3.5/ZIGP/man/FM.rd |only ZIGP-3.5/ZIGP/man/ZIGP-package.rd |only ZIGP-3.6/ZIGP/DESCRIPTION | 8 ++++---- ZIGP-3.6/ZIGP/R/est.zigp.r | 17 ++++++++++++++++- ZIGP-3.6/ZIGP/R/fm.r |only ZIGP-3.6/ZIGP/man/fm.rd |only ZIGP-3.6/ZIGP/man/zigp-package.rd |only 8 files changed, 20 insertions(+), 5 deletions(-)
More information about ZIGP at CRAN
Path: /cran/updated | permanent link
Author: Greg Snow
Title: Demonstrations for teaching and learning
Description: This package is a set of demonstration functions that can
be used in a classroom to demonstrate statistical concepts, or
on your own to better understand the concepts or the
programming.
Diff between TeachingDemos versions 2.3 dated 2008-07-08 and 2.4 dated 2009-06-26
TeachingDemos-2.3/TeachingDemos/MM_Interact_manual.pdf |only TeachingDemos-2.3/TeachingDemos/MM_interact_fun.R |only TeachingDemos-2.3/TeachingDemos/MichaelMeredith.html |only TeachingDemos-2.3/TeachingDemos/R/strip.shingle.R |only TeachingDemos-2.3/TeachingDemos/man/strip.shingle.Rd |only TeachingDemos-2.4/TeachingDemos/DESCRIPTION | 29 - TeachingDemos-2.4/TeachingDemos/NAMESPACE | 9 TeachingDemos-2.4/TeachingDemos/NEWS | 40 ++ TeachingDemos-2.4/TeachingDemos/R/Pvalue.sim.R |only TeachingDemos-2.4/TeachingDemos/R/R2txt.R | 14 TeachingDemos-2.4/TeachingDemos/R/TkPredict.R |only TeachingDemos-2.4/TeachingDemos/R/gp.splot.R |only TeachingDemos-2.4/TeachingDemos/R/ineq.R |only TeachingDemos-2.4/TeachingDemos/R/loess.demo.R | 8 TeachingDemos-2.4/TeachingDemos/R/mle.demo.R | 2 TeachingDemos-2.4/TeachingDemos/R/mysymbols.R | 181 ++++------ TeachingDemos-2.4/TeachingDemos/R/panel.mysymbols.R |only TeachingDemos-2.4/TeachingDemos/R/plot2script.R | 13 TeachingDemos-2.4/TeachingDemos/R/prob.axis.R |only TeachingDemos-2.4/TeachingDemos/R/range.R |only TeachingDemos-2.4/TeachingDemos/R/shadowtext.R |only TeachingDemos-2.4/TeachingDemos/R/squishplot.R | 4 TeachingDemos-2.4/TeachingDemos/R/subplot.R | 39 +- TeachingDemos-2.4/TeachingDemos/R/tkexamp.R | 95 +++-- TeachingDemos-2.4/TeachingDemos/R/vis.binom.R | 4 TeachingDemos-2.4/TeachingDemos/R/vis.boxcox.R | 3 TeachingDemos-2.4/TeachingDemos/R/vis.gamma.R | 4 TeachingDemos-2.4/TeachingDemos/R/vis.normal.R | 3 TeachingDemos-2.4/TeachingDemos/R/vis.t.R | 5 TeachingDemos-2.4/TeachingDemos/SyncToy_726f062a-4434-4055-9168-9e4dfdf9d479.dat |only TeachingDemos-2.4/TeachingDemos/SyncToy_cc1ca190-d98a-47e0-ad69-312b9db9af9b.dat |only TeachingDemos-2.4/TeachingDemos/data/evap.rda |only TeachingDemos-2.4/TeachingDemos/data/state.vbm.rda |binary TeachingDemos-2.4/TeachingDemos/data/stork.rda |only TeachingDemos-2.4/TeachingDemos/man/Pvalue.sim.Rd |only TeachingDemos-2.4/TeachingDemos/man/TeachingDemos-package.Rd | 15 TeachingDemos-2.4/TeachingDemos/man/TkPredict.Rd |only TeachingDemos-2.4/TeachingDemos/man/clipplot.Rd | 5 TeachingDemos-2.4/TeachingDemos/man/evap.Rd |only TeachingDemos-2.4/TeachingDemos/man/gp.open.Rd | 9 TeachingDemos-2.4/TeachingDemos/man/ineq.Rd |only TeachingDemos-2.4/TeachingDemos/man/ms.polygram.Rd | 2 TeachingDemos-2.4/TeachingDemos/man/panel.mysymbols.Rd |only TeachingDemos-2.4/TeachingDemos/man/slider.Rd | 76 ---- TeachingDemos-2.4/TeachingDemos/man/squishplot.Rd | 6 TeachingDemos-2.4/TeachingDemos/man/state.vbm.Rd | 9 TeachingDemos-2.4/TeachingDemos/man/stork.Rd |only TeachingDemos-2.4/TeachingDemos/man/subplot.Rd | 32 + TeachingDemos-2.4/TeachingDemos/man/tkexamp.Rd | 27 + 49 files changed, 381 insertions(+), 253 deletions(-)
More information about TeachingDemos at CRAN
Path: /cran/updated | permanent link