Fri, 30 Sep 2016

Package LANDD updated to version 1.1.0 with previous version 1.0.0 dated 2015-10-06

Title: Liquid Association for Network Dynamics Detection
Description: Using Liquid Association for Network Dynamics Detection.
Author: Shangzhao Qiu, Yan Yan, Tianwei Yu
Maintainer: Shangzhao Qiu <qsz1328@gmail.com>

Diff between LANDD versions 1.0.0 dated 2015-10-06 and 1.1.0 dated 2016-09-30

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New package spass with initial version 1.0
Package: spass
Title: Study Planning and Adaptation of Sample Size
Version: 1.0
Date: 2016-09-12
Author: T. Asendorf, R. Gera, S. Islam, M. Harden and M. Placzek
Maintainer: Marius Placzek <marius.placzek@med.uni-goettingen.de>
Description: Sample size estimation and blinded sample size reestimation in Adaptive Study Design.
Imports: stats, utils
Depends: mvtnorm,multcomp,Rcpp,MASS,geepack
License: GPL
LazyData: true
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2016-09-30 12:49:13 UTC; mplacze
Repository: CRAN
Date/Publication: 2016-10-01 01:00:37

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Package seleniumPipes updated to version 0.3.7 with previous version 0.3.0 dated 2016-08-24

Title: R Client Implementing the W3C WebDriver Specification
Description: The W3C WebDriver specification defines a way for out-of-process programs to remotely instruct the behaviour of web browsers. It is detailed at <https://w3c.github.io/webdriver/webdriver-spec.html>. This package provides an R client implementing the W3C specification.
Author: John Harrison [aut, cre]
Maintainer: John Harrison <johndharrison0@gmail.com>

Diff between seleniumPipes versions 0.3.0 dated 2016-08-24 and 0.3.7 dated 2016-09-30

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New package lvnet with initial version 0.2
Package: lvnet
Type: Package
Title: Latent Variable Network Modeling
Version: 0.2
Author: Sacha Epskamp
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Description: Estimate, fit and compare Structural Equation Models (SEM) and network models (Gaussian Graphical Models; GGM) using OpenMx. Allows for two possible generalizations to include GGMs in SEM: GGMs can be used between latent variables (latent network modeling; LNM) or between residuals (residual network modeling; RNM).
License: GPL-2
Imports: glasso, qgraph, Matrix, psych, mvtnorm, parallel, corpcor, dplyr, methods
Suggests: lavaan
Depends: OpenMx
NeedsCompilation: no
Packaged: 2016-09-30 15:18:31 UTC; sachaepskamp
Repository: CRAN
Date/Publication: 2016-10-01 00:58:37

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Package joint.Cox updated to version 2.8 with previous version 2.7 dated 2016-09-21

Title: Penalized Likelihood Estimation and Dynamic Prediction under the Joint Frailty-Copula Models Between Tumour Progression and Death for Meta-Analysis
Description: Perform the Cox regression and dynamic prediction under the joint frailty-copula model between tumour progression and death for meta-analysis. The method is applicable for meta-analytic data combining several studies. The data should have information on both terminal event time (time-to-death) and non-terminal event time (time-to-tumour progression).
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>

Diff between joint.Cox versions 2.7 dated 2016-09-21 and 2.8 dated 2016-09-30

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New package GEint with initial version 0.1.1
Package: GEint
Type: Package
Title: Misspecified Models for Gene-Environment Interaction
Version: 0.1.1
Date: 2016-09-30
Authors@R: person("Ryan", "Sun", email = "ryansun.work@gmail.com", role = c("aut", "cre"))
Description: Compute the bias in misspecified linear gene-environment interaction models. The most generalized function for this objective is GE_bias(). However GE_bias() requires specification of many higher order moments of covariates in the model. If users are unsure about how to calculate/estimate these higher order moments, it may be easier to use GE_bias_normal_squaredmis(). This function places many more assumptions on the covariates (most notably that they are all jointly generated from a multivariate normal distribution) and is thus able to automatically calculate many of the higher order moments automatically, necessitating only that the user specify some covariances. There are also functions to solve for the bias through simulation and non-linear equation solvers, these can be used to check your work.
Imports: mvtnorm, nleqslv, pracma, speedglm, rje, geepack, stats
License: GPL-3
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-09-30 17:00:29 UTC; ryansun
Author: Ryan Sun [aut, cre]
Maintainer: Ryan Sun <ryansun.work@gmail.com>
Repository: CRAN
Date/Publication: 2016-10-01 01:07:46

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New package gdns with initial version 0.2.0
Package: gdns
Title: Tools to Work with Google DNS Over HTTPS API
Version: 0.2.0
Authors@R: c(person("Bob", "Rudis", email = "bob@rud.is", role = c("aut", "cre")))
Maintainer: Bob Rudis <bob@rud.is>
Description: To address the problem of insecurity of UDP-based DNS requests, Google Public DNS offers DNS resolution over an encrypted HTTPS connection. DNS-over-HTTPS greatly enhances privacy and security between a client and a recursive resolver, and complements DNSSEC to provide end-to-end authenticated DNS lookups. Functions that enable querying individual requests that bulk requests that return detailed responses and bulk requests are both provided. Support for reverse lookups is also provided. See <https://developers.google.com/speed/public-dns/docs/dns-over-https> for more information.
License: AGPL + file LICENSE
LazyData: true
Encoding: UTF-8
Depends: R (>= 3.0.0)
Suggests: testthat
Imports: httr, jsonlite, purrr, stringi
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-30 11:41:52 UTC; bob
Author: Bob Rudis [aut, cre]
Repository: CRAN
Date/Publication: 2016-10-01 01:08:30

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Package downscale updated to version 1.2-3 with previous version 1.2-2 dated 2016-08-19

Title: Downscaling Species Occupancy
Description: A set of functions that downscales species occupancy at coarse grain sizes to predict species occupancy at fine grain sizes.
Author: Charles Marsh [aut, cre]
Maintainer: Charles Marsh <charliem2003@gmail.com>

Diff between downscale versions 1.2-2 dated 2016-08-19 and 1.2-3 dated 2016-09-30

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Package bio3d updated to version 2.3-0 with previous version 2.2-4 dated 2015-12-12

Title: Biological Structure Analysis
Description: Utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. Please refer to the URLs below for more information.
Author: Barry Grant [aut, cre], Xin-Qiu Yao [aut], Lars Skjaerven [aut], Julien Ide [aut]
Maintainer: Barry Grant <bjgrant@umich.edu>

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Package spoccutils (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-07-07 0.1.0

Permanent link
Package MendelianRandomization updated to version 0.2.0 with previous version 0.1.0 dated 2016-08-31

Title: Mendelian Randomization Package
Description: Encodes several methods for performing Mendelian randomization analyses with summarized data. Summarized data on genetic associations with the exposure and with the outcome can be obtained from large consortia. These data can be used for obtaining causal estimates using instrumental variable methods.
Author: Olena Yavorska <yavorsko@tcd.ie>
Maintainer: Stephen Burgess <sb452@medschl.cam.ac.uk>

Diff between MendelianRandomization versions 0.1.0 dated 2016-08-31 and 0.2.0 dated 2016-09-30

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Package FamEvent updated to version 1.2 with previous version 1.1 dated 2016-03-09

Title: Family Age-at-Onset Data Simulation and Penetrance Estimation
Description: Simulates age-at-onset traits associated with a segregating major gene in family data obtained from population-based, clinic-based, or multi-stage designs. Appropriate ascertainment correction is utilized to estimate age-dependent penetrance functions either parametrically from the fitted model or nonparametrically from the data. The Expectation and Maximization algorithm can infer missing genotypes and carrier probabilities estimated from family's genotype and phenotype information or from a fitted model. Plot functions include pedigrees of simulated families and predicted penetrance curves based on specified parameter values.
Author: Yun-Hee Choi, Karen Kopciuk, Wenqing He, Laurent Briollais
Maintainer: Yun-Hee Choi <yun-hee.choi@schulich.uwo.ca>

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Package braQCA updated to version 0.9.9.3 with previous version 0.9.9.1 dated 2016-05-17

Title: Bootstrapped Robustness Assessment for Qualitative Comparative Analysis
Description: Test the robustness of a user's Qualitative Comparative Analysis solutions to randomness, using the bootstrapped assessment: baQCA(). This package also includes a function that provides recommendations for improving solutions to reach typical significance levels: brQCA().
Author: C. Ben Gibson [aut, cre], Burrel Vann Jr [aut]
Maintainer: C. Ben Gibson <cbgibson@uci.edu>

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New package gTests with initial version 0.1
Package: gTests
Version: 0.1
Date: 2016-9-29
Title: Graph-Based Two-Sample Tests
Author: Hao Chen
Maintainer: Hao Chen <hxchen@ucdavis.edu>
Depends: R (>= 3.0.1)
Description: Three graph-based tests are provided for testing whether two samples are from the same distribution.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-09-30 07:45:25 UTC; haochen
Repository: CRAN
Date/Publication: 2016-09-30 10:58:05

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Package FrF2 updated to version 1.7-2 with previous version 1.7-1 dated 2014-07-31

Title: Fractional Factorial Designs with 2-Level Factors
Description: Regular and non-regular Fractional Factorial 2-level designs can be created. Furthermore, analysis tools for Fractional Factorial designs with 2-level factors are offered (main effects and interaction plots for all factors simultaneously, cube plot for looking at the simultaneous effects of three factors, full or half normal plot, alias structure in a more readable format than with the built-in function alias).
Author: Ulrike Groemping
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>

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Package dMod updated to version 0.3.2 with previous version 0.3.1 dated 2016-05-18

Title: Dynamic Modeling and Parameter Estimation in ODE Models
Description: The framework provides functions to generate ODEs of reaction networks, parameter transformations, observation functions, residual functions, etc. The framework follows the paradigm that derivative information should be used for optimization whenever possible. Therefore, all major functions produce and can handle expressions for symbolic derivatives.
Author: Daniel Kaschek
Maintainer: Daniel Kaschek <daniel.kaschek@physik.uni-freiburg.de>

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New package sublime with initial version 1.3
Package: sublime
Type: Package
Title: Automatic Lesion Incidence Estimation and Detection using Multi-Modality Longitudinal Magnetic Resonance Images
Version: 1.3
Date: 2016-09-29
Authors@R: c(person(given = "Elizabeth M.", "Sweeney", email = "elizabethmargaretsweeney@gmail.com", role = c("aut", "cre")), person(given = "John", "Muschelli", email = "muschellij2@gmail.com", role = c("aut")) )
Maintainer: Elizabeth M. Sweeney <elizabethmargaretsweeney@gmail.com>
Description: Creates probability maps of incident and enlarging lesion voxels from a baseline and followup magnetic resonance imaging study in patients with multiple sclerosis.
License: GPL
LazyData: true
Depends: oro.nifti
Imports: downloader, graphics, stats, grDevices, AnalyzeFMRI
RoxygenNote: 5.0.1.9000
NeedsCompilation: no
Packaged: 2016-09-29 21:23:01 UTC; johnmuschelli
Author: Elizabeth M. Sweeney [aut, cre], John Muschelli [aut]
Repository: CRAN
Date/Publication: 2016-09-30 08:30:25

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Package propr updated to version 2.0.1 with previous version 2.0.0 dated 2016-08-27

Title: Calculating Proportionality Between Vectors of Compositional Data
Description: The bioinformatic evaluation of gene co-expression often begins with correlation-based analyses. However, this approach lacks statistical validity when applied to relative data, including those biological count data produced by microarray assays or high-throughput RNA-sequencing. Two metrics of proportionality, phi [Lovell et al (2015) <DOI:10.1371/journal.pcbi.1004075>] and rho [Erb and Notredame (2016) <DOI:10.1007/s12064-015-0220-8>], both derived from compositional data analysis, a branch of math dealing specifically with relative data, represent novel alternatives to correlation. This package introduces a programmatic framework for the calculation of feature dependence through proportionality, as discussed in the cited publications.
Author: Thomas Quinn [aut, cre], David Lovell [aut]
Maintainer: Thomas Quinn <contacttomquinn@gmail.com>

Diff between propr versions 2.0.0 dated 2016-08-27 and 2.0.1 dated 2016-09-30

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New package knotR with initial version 1.0-1
Package: knotR
Type: Package
Title: Knot Diagrams using Bezier Curves
Version: 1.0-1
Date: 2016-04-26
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
LazyData: TRUE
Description: Makes nice pictures of knots using Bezier curves and numerical optimization.
License: GPL-2
NeedsCompilation: no
Packaged: 2016-09-25 19:57:57 UTC; rhankin
Depends: R (>= 2.10)
Repository: CRAN
Date/Publication: 2016-09-30 08:30:21

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Package hBayesDM updated to version 0.2.3.1 with previous version 0.2.3 dated 2016-07-17

Title: Hierarchical Bayesian Modeling of Decision-Making Tasks
Description: Fit an array of decision-making tasks with computational models in a hierarchical Bayesian framework. Can perform hierarchical Bayesian analysis of various computational models with a single line of coding.
Author: Woo-Young Ahn [aut, cre], Nate Haines [aut], Lei Zhang [aut]
Maintainer: Woo-Young Ahn <ahn.280@osu.edu>

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Permanent link

Package cowplot updated to version 0.6.3 with previous version 0.6.2 dated 2016-04-20

Title: Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Description: Some helpful extensions and modifications to the 'ggplot2' package. In particular, this package makes it easy to combine multiple 'ggplot2' plots into one and label them with letters, e.g. A, B, C, etc., as is often required for scientific publications. The package also provides a streamlined and clean theme that is used in the Wilke lab, hence the package name, which stands for Claus O. Wilke's plot package.
Author: Claus O. Wilke [aut, cre], Hadley Wickham [cph]
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>

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Package skatMeta (with last version 1.4.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-06-04 1.4.3
2013-04-01 1.3.1
2013-03-27 1.3

Permanent link

Thu, 29 Sep 2016

Package oasis updated to version 2.1 with previous version 0.99.5 dated 2015-12-26

Title: Multiple Sclerosis Lesion Segmentation using Magnetic Resonance Imaging (MRI)
Description: Trains and makes predictions from the OASIS method, described in detail in the paper "OASIS is Automated Statistical Inference for Segmentation, with applications to multiple sclerosis lesion segmentation in MRI" <doi:10.1016/j.nicl.2013.03.002>. OASIS is a method for multiple sclerosis (MS) lesion segmentation on structural magnetic resonance image (MRI) studies. OASIS creates probability maps of lesion presence using the FLAIR, T2, T1, and PD structural MRI volumes. This packages allows for training of the OASIS model and prediction of OASIS probability maps from a trained model with user supplied studies that have a gold standard lesion segmentation masks. The package will also create OASIS probability maps for MRI studies using the OASIS model from the OASIS paper if no gold standard lesion segmentation masks are available.
Author: Elizabeth M. Sweeney [aut, cre], John Muschelli [aut], R. Taki Shinohara [aut]
Maintainer: Elizabeth M. Sweeney <emsweene@jhsph.edu>

Diff between oasis versions 0.99.5 dated 2015-12-26 and 2.1 dated 2016-09-29

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New package gdmp with initial version 0.1.0
Package: gdmp
Type: Package
Title: Genomic Data Management
Version: 0.1.0
Date: 2016-09-27
Authors@R: c(person(given="Gamal", family="Abdel-Azim", role = c("aut", "cre"), email = "gamal.azim@gmail.com"))
Maintainer: Gamal Abdel-Azim <gamal.azim@gmail.com>
Description: Manage and analyze high-dimensional SNP data from chips with multiple densities.
Depends: methods, R(>= 2.6.0)
License: GPL (>= 2)
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-09-29 16:51:05 UTC; gamal
Author: Gamal Abdel-Azim [aut, cre]
Repository: CRAN
Date/Publication: 2016-09-29 23:48:56

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New package BigSEM with initial version 0.2
Package: BigSEM
Type: Package
Title: Constructing Large Systems of Structural Equations
Version: 0.2
Date: 2016-09-29
Author: Chen Chen, Dabao Zhang
Maintainer: Dabao Zhang <zhangdb@stat.purdue.edu>
Description: Construct large systems of structural equations using the two-stage penalized least squares (2SPLS) method proposed by Chen, Zhang and Zhang (2016).
Imports: MASS, parcor, stats
Depends: R(>= 2.10.0)
License: GPL-2
NeedsCompilation: no
Packaged: 2016-09-29 16:37:25 UTC; zhangdb
Repository: CRAN
Date/Publication: 2016-09-29 23:46:31

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Package treescape updated to version 1.10.17 with previous version 1.9.17 dated 2016-06-13

Title: Statistical Exploration of Landscapes of Phylogenetic Trees
Description: Tools for the exploration of distributions of phylogenetic trees. This package includes a shiny interface which can be started from R using 'treescapeServer()'.
Author: Thibaut Jombart [aut], Michelle Kendall [aut, cre], Jacob Almagro-Garcia [aut], Caroline Colijn [aut]
Maintainer: Michelle Kendall <m.kendall@imperial.ac.uk>

Diff between treescape versions 1.9.17 dated 2016-06-13 and 1.10.17 dated 2016-09-29

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Package paleomorph updated to version 0.1.3 with previous version 0.1.2 dated 2016-08-08

Title: Geometric Morphometric Tools for Paleobiology
Description: Fill missing symmetrical data with mirroring, calculate Procrustes alignments with or without scaling, and compute standard or vector correlation and covariance matrices (congruence coefficients) of 3D landmarks. Tolerates missing data for all analyses.
Author: Tim Lucas, Anjali Goswami
Maintainer: Tim Lucas <timcdlucas@gmail.com>

Diff between paleomorph versions 0.1.2 dated 2016-08-08 and 0.1.3 dated 2016-09-29

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More information about paleomorph at CRAN
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Package spcadjust updated to version 1.1 with previous version 1.0 dated 2015-11-21

Title: Functions for Calibrating Control Charts
Description: Calibration of thresholds of control charts such as CUSUM charts based on past data, taking estimation error into account.
Author: Axel Gandy <a.gandy@imperial.ac.uk> and Jan Terje Kvaloy <jan.t.kvaloy@uis.no>.
Maintainer: Axel Gandy <a.gandy@imperial.ac.uk>

Diff between spcadjust versions 1.0 dated 2015-11-21 and 1.1 dated 2016-09-29

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New package scanstatistics with initial version 0.1.0
Package: scanstatistics
Type: Package
Title: Space-Time Anomaly Detection using Scan Statistics
Description: Detection of anomalous space-time clusters using the scan statistics methodology. Focuses on prospective surveillance of data streams, scanning for clusters with ongoing anomalies. Hypothesis testing is made possible by the generation of Monte Carlo p-values.
Version: 0.1.0
Date: 2016-09-28
Authors@R: person("Benjamin", "Kjellson", email = "benjak@math.su.se", role = c("aut", "cre"))
Maintainer: Benjamin Kjellson <benjak@math.su.se>
Encoding: UTF-8
License: GPL (>= 3)
URL: https://github.com/BenjaK/scanstatistics
BugReports: https://github.com/BenjaK/scanstatistics/issues
Depends: data.table, R (>= 2.10)
Imports: gamlss.dist, magrittr, plyr, sets
Suggests: doParallel, foreach, ggplot2, knitr, MASS, pscl, purrr, reshape2, rmarkdown, sp, testthat
VignetteBuilder: knitr
RoxygenNote: 5.0.1
ByteCompile: true
NeedsCompilation: no
Packaged: 2016-09-29 06:03:25 UTC; benjamin
Author: Benjamin Kjellson [aut, cre]
Repository: CRAN
Date/Publication: 2016-09-29 11:37:32

More information about scanstatistics at CRAN
Permanent link

New package ProFit with initial version 1.0
Package: ProFit
Type: Package
Title: Fit Projected 2D Profiles to Galaxy Images
Version: 1.0
Date: 2016-09-23
Author: Aaron Robotham, Dan Taranu, Rodrigo Tobar
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Description: Get data / Define model / ??? / ProFit! ProFit is a Bayesian galaxy fitting tool that uses a fast C++ image generation library and a flexible interface to a large number of likelihood samplers.
License: GPL-3
Imports: fftw, Rcpp (>= 0.11.6)
Depends: R (>= 3.0), FITSio, LaplacesDemon, magicaxis, R2Cuba, RColorBrewer
LinkingTo: Rcpp
Suggests: knitr
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-09-29 07:27:50 UTC; aaron
Repository: CRAN
Date/Publication: 2016-09-29 11:37:28

More information about ProFit at CRAN
Permanent link

Package npsp updated to version 0.5-3 with previous version 0.3-6 dated 2014-10-20

Title: Nonparametric Spatial Statistics
Description: Multidimensional nonparametric spatio-temporal (geo)statistics. S3 classes and methods for multidimensional: linear binning, local polynomial kernel regression, density and variogram estimation. Nonparametric methods for trend and variogram inference.
Author: Ruben Fernandez-Casal
Maintainer: Ruben Fernandez-Casal <rubenfcasal@gmail.com>

Diff between npsp versions 0.3-6 dated 2014-10-20 and 0.5-3 dated 2016-09-29

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Package NNS updated to version 0.2.2 with previous version 0.2.1 dated 2016-09-13

Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences.
Author: Fred Viole
Maintainer: Fred Viole <viole.nawrocki@gmail.com>

Diff between NNS versions 0.2.1 dated 2016-09-13 and 0.2.2 dated 2016-09-29

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Package MetaIntegrator updated to version 1.0.3 with previous version 1.0.1 dated 2016-08-30

Title: Meta-Analysis of Gene Expression Data
Description: A pipeline for the meta-analysis of gene expression data. We have assembled several analysis and plot functions to perform integrated multi-cohort analysis of gene expression data (meta- analysis). Methodology described in: <http://biorxiv.org/content/early/2016/08/25/071514>.
Author: Winston A. Haynes, Francesco Vallania, Aurelie Tomczak, Timothy Sweeney, Erika Bongen, Purvesh Khatri
Maintainer: Winston A. Haynes <hayneswa@stanford.edu>

Diff between MetaIntegrator versions 1.0.1 dated 2016-08-30 and 1.0.3 dated 2016-09-29

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 MD5                          |   10 +++++-----
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Permanent link

New package DPBBM with initial version 0.2.5
Package: DPBBM
Type: Package
Title: Dirichlet Process Beta-Binomial Mixture
Version: 0.2.5
Date: 2016-09-21
Author: Lin Zhang
Maintainer: Lin Zhang <lin.zhang@cumt.edu.cn>
Depends: R (>= 3.1.0)
Imports: tmvtnorm, VGAM, gplots, CEoptim
Description: Beta-binomial Mixture Model is used to infer the pattern from count data. It can be used for clustering of RNA methylation sequencing data.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-09-28 15:21:06 UTC; lin.zhang
Repository: CRAN
Date/Publication: 2016-09-29 08:02:30

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Package bfa updated to version 0.4 with previous version 0.3.1 dated 2014-02-11

Title: Bayesian Factor Analysis
Description: Provides model fitting for several Bayesian factor models including Gaussian, ordinal probit, mixed and semiparametric Gaussian copula factor models under a range of priors.
Author: Jared Murray
Maintainer: Jared Murray <jsmurray@stat.cmu.edu>

Diff between bfa versions 0.3.1 dated 2014-02-11 and 0.4 dated 2016-09-29

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More information about bfa at CRAN
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Wed, 28 Sep 2016

Package addinslist updated to version 0.2 with previous version 0.1 dated 2016-05-04

Title: Discover and Install Useful RStudio Addins
Description: Browse through a continuously updated list of existing RStudio addins and install/uninstall their corresponding packages.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>

Diff between addinslist versions 0.1 dated 2016-05-04 and 0.2 dated 2016-09-28

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Permanent link

Package VWPre updated to version 0.9.0 with previous version 0.7.0 dated 2016-06-19

Title: Tools for Preprocessing Visual World Data
Description: Gaze data from the Visual World Paradigm requires significant preprocessing prior to plotting and analyzing the data. This package provides functions for preparing visual world eye-tracking data for statistical analysis and plotting. It can prepare data for linear analyses (e.g., ANOVA, Gaussian-family LMER, Gaussian-family GAMM) as well as logistic analyses (e.g., binomial-family LMER and binomial-family GAMM). Additionally, it contains various plotting functions for creating grand average and conditional average plots. See the vignette for samples of the functionality. Currently, the functions in this package are designed for handling data collected with SR Research Eyelink eye trackers using Sample Reports created in SR Research Data Viewer; however, in subsequent releases we would like to add functionality for data collected with other systems.
Author: Vincent Porretta [aut, cre], Aki-Juhani Kyröläinen [aut], Jacolien van Rij [ctb], Juhani Järvikivi [ctb]
Maintainer: Vincent Porretta <vincentporretta@gmail.com>

Diff between VWPre versions 0.7.0 dated 2016-06-19 and 0.9.0 dated 2016-09-28

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New package SCRSELECT with initial version 1.1-0
Package: SCRSELECT
Title: Performs Bayesian Variable Selection on the Covariates in a Semi-Competing Risks Model
Version: 1.1-0
Authors@R: person("Andrew", "Chapple", email = "Andrew.G.Chapple@rice.edu", role = c("aut", "cre"))
Description: Contains four functions used in the DIC-tau_g procedure. SCRSELECT() and SCRSELECTRUN() uses Stochastic Search Variable Selection to select important covariates in the three hazard functions of a semi-competing risks model. These functions perform the Gibbs sampler for variable selection and a Metropolis-Hastings-Green sampler for the number of split points and parameters for the three baseline hazard function. The function SCRSELECT() returns the posterior sample of all quantities sampled in the Gibbs sampler after a burn-in period to a desired file location, while the function SCRSELECTRUN() returns posterior values of important quantities to the DIC-Tau_g procedure in a list. The function DICTAUG() returns a list containing the DIC values for the unique models visited by the DIC-Tau_g grid search. The function ReturnModel() uses SCRSELECTRUN() and DICTAUG() to return a summary of the posterior coefficient vectors for the optimal model along with saving this posterior sample to a desired path location.
Depends: R (>= 3.2.2), mvtnorm
License: GPL-2
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-28 13:00:58 UTC; Andrew
Author: Andrew Chapple [aut, cre]
Maintainer: Andrew Chapple <Andrew.G.Chapple@rice.edu>
Repository: CRAN
Date/Publication: 2016-09-28 21:32:49

More information about SCRSELECT at CRAN
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Package pmml updated to version 1.5.1 with previous version 1.5.0 dated 2015-08-05

Title: Generate PMML for Various Models
Description: The Predictive Model Markup Language (PMML) is an XML-based language which provides a way for applications to define statistical and data mining models and to share models between PMML compliant applications. More information about PMML and the Data Mining Group can be found at http:// www.dmg.org. The generated PMML can be imported into any PMML consuming application, such as the Zementis ADAPA and UPPI scoring engines which allow for predictive models built in R to be deployed and executed on site, in the cloud (Amazon, IBM, and FICO), in-database (IBM Netezza, Pivotal, Sybase IQ, Teradata and Teradata Aster) or Hadoop (Datameer and Hive).
Author: Graham Williams, Tridivesh Jena, Wen Ching Lin, Michael Hahsler (arules), Zementis Inc, Hemant Ishwaran, Udaya B. Kogalur, Rajarshi Guha, Dmitriy Bolotov
Maintainer: Tridivesh Jena <rpmmlsupport@zementis.net>

Diff between pmml versions 1.5.0 dated 2015-08-05 and 1.5.1 dated 2016-09-28

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New package MatchItSE with initial version 1.0
Package: MatchItSE
Type: Package
Title: Calculates SE for Matched Samples from 'MatchIt'
Version: 1.0
Date: 2016-09-06
Author: Thorsten Henke
Maintainer: Thorsten Henke <MatchItSE@thorsten-henke.de>
Description: Contains various methods for Standard Error estimation for 'MatchIt' objects.
URL: https://github.com/thorstenhenke/MatchItSE
BugReports: https://github.com/thorstenhenke/MatchItSE/issues
License: GPL (>= 2)
Depends: R (>= 3.3.1)
Imports: Rcpp (>= 0.12.4), methods
Suggests: optmatch
Enhances: MatchIt
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 5.0.1
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2016-09-28 18:33:00 UTC; thorsten
Repository: CRAN
Date/Publication: 2016-09-28 22:44:06

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Package DoE.base updated to version 0.29 with previous version 0.28 dated 2016-03-10

Title: Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages
Description: Package DoE.base creates full factorial experimental designs and designs based on orthogonal arrays for (industrial) experiments. Additionally, it provides utility functions for the class design, which is also used by other packages for designed experiments.
Author: Ulrike Groemping [aut, cre], Boyko Amarov [ctb], Hongquan Xu [ctb]
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>

Diff between DoE.base versions 0.28 dated 2016-03-10 and 0.29 dated 2016-09-28

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Package astsa updated to version 1.6 with previous version 1.5 dated 2016-07-31

Title: Applied Statistical Time Series Analysis
Description: Contains data sets and scripts to accompany Time Series Analysis and Its Applications: With R Examples by Shumway and Stoffer, fourth edition.
Author: David Stoffer
Maintainer: David Stoffer <stoffer@pitt.edu>

Diff between astsa versions 1.5 dated 2016-07-31 and 1.6 dated 2016-09-28

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New package curry with initial version 0.1.1
Package: curry
Type: Package
Title: Partial Function Application with %<%, %-<%, and %><%
Version: 0.1.1
Date: 2016-09-28
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Description: Partial application is the process of reducing the arity of a function by fixing one or more arguments, thus creating a new function lacking the fixed arguments. The curry package provides three different ways of performing partial function application by fixing arguments from either end of the argument list (currying and tail currying) or by fixing multiple named arguments (partial application). This package provides this functionality through the %<%, %-<%, and %><% operators which allows for a programming style comparable to modern functional languages. Compared to other implementations such a purrr::partial() the operators in curry composes functions with named arguments, aiding in autocomplete etc.
License: GPL (>= 2)
LazyData: TRUE
RoxygenNote: 5.0.1
Collate: 'utils.R' 'curry.R' 'partial.R' 'scaffold.R' 'tail_curry.R'
URL: https://github.com/thomasp85/curry
BugReports: https://github.com/thomasp85/curry/issues
NeedsCompilation: no
Packaged: 2016-09-28 18:18:09 UTC; Thomas
Repository: CRAN
Date/Publication: 2016-09-28 22:18:23

More information about curry at CRAN
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New package RDocumentation with initial version 0.6
Package: RDocumentation
Type: Package
Title: Integrate R with 'RDocumentation.org'
Version: 0.6
Author: Jonathan Cornelissen <jonathan@datacamp.com>
Maintainer: Ludovic Vannoorenberghe <ludovic@datacamp.com>
URL: https://www.rdocumentation.org, https://www.datacamp.com
BugReports: https://github.com/datacamp/RDocumentation/issues
Description: Wraps around the default help functionality in R. Instead of plain documentation files, documentation will now show up as it does on 'RDocumentation.org', a platform that shows R documentation from CRAN, GitHub and Bioconductor, together with informative stats to assess the package quality and possibilities to discuss packages.
License: GPL (>= 2)
Imports: httr (>= 1.2.1), proto (>= 0.3-10), rjson (>= 0.2.15), utils, githubinstall
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: no
Packaged: 2016-09-28 16:38:13 UTC; ludov
Repository: CRAN
Date/Publication: 2016-09-28 19:34:56

More information about RDocumentation at CRAN
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Package msgl updated to version 2.3.0 with previous version 2.2.1 dated 2016-09-10

Title: High Dimensional Multiclass Classification Using Sparse Group Lasso
Description: Multinomial logistic regression with sparse group lasso penalty. Simultaneous feature selection and parameter estimation for classification. Suitable for high dimensional multiclass classification with many classes. The algorithm computes the sparse group lasso penalized maximum likelihood estimate. Use of parallel computing for cross validation and subsampling is supported through the 'foreach' and 'doParallel' packages. Development version is on GitHub, please report package issues on GitHub.
Author: Martin Vincent
Maintainer: Martin Vincent <martin.vincent.dk@gmail.com>

Diff between msgl versions 2.2.1 dated 2016-09-10 and 2.3.0 dated 2016-09-28

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Package fslr updated to version 2.0 with previous version 1.9.2.1 dated 2016-09-06

Title: Wrapper Functions for FSL ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')
Description: Wrapper functions that interface with 'FSL' (http:// fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'FSL' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'FSL' command and returns an R object of class 'nifti' if desired.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between fslr versions 1.9.2.1 dated 2016-09-06 and 2.0 dated 2016-09-28

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Package freesurfer updated to version 1.0 with previous version 0.9.8 dated 2016-09-07

Title: Wrapper Functions for 'Freesurfer'
Description: Wrapper functions that interface with 'Freesurfer' (https:// surfer.nmr.mgh.harvard.edu/), a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'Freesurfer' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'Freesurfer' command and returns an R object of class 'nifti' or necessary output.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between freesurfer versions 0.9.8 dated 2016-09-07 and 1.0 dated 2016-09-28

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Package cartogram updated to version 0.0.2 with previous version 0.0.1 dated 2016-08-30

Title: Create Cartograms with R
Description: Construct continuous and non-contiguous area cartograms.
Author: Sebastian Jeworutzki [aut, cre], Timothee Giraud [ctb], Nicolas Lambert [ctb], Roger Bivand [cph], Edzer Pebesma [cph]
Maintainer: Sebastian Jeworutzki <sebastian.jeworutzki@ruhr-uni-bochum.de>

Diff between cartogram versions 0.0.1 dated 2016-08-30 and 0.0.2 dated 2016-09-28

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Package BEDMatrix updated to version 1.3.0 with previous version 1.2.0 dated 2016-03-04

Title: Matrices Backed by Binary PED Files (PLINK)
Description: A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (http://pngu.mgh.harvard.edu/~purcell/plink/), the whole genome association analysis toolset, without loading the entire file into memory.
Author: Alexander Grueneberg [aut, cre], Lian Lian [ctb], Gustavo de los Campos [ctb]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>

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Package AncestryMapper updated to version 2.0 with previous version 1.2 dated 2015-02-03

Title: Assigning Ancestry Based on Population References
Description: Assigns genetic ancestry to an individual and studies relationships between local and global populations.
Author: Tiago R Magalhaes, Eoghan T O'Halloran
Maintainer: Eoghan T O'Halloran <eoghan.ohalloran2@mail.dcu.ie>

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Package spm12r updated to version 2.0 with previous version 1.1.1 dated 2015-11-03

Title: Wrapper Functions for 'SPM' (Statistical Parametric Mapping) Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'
Description: Installs 'SPM12' to the R library directory and has associated functions for 'fMRI' and general imaging utilities, called through 'MATLAB'.
Author: John Muschelli
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between spm12r versions 1.1.1 dated 2015-11-03 and 2.0 dated 2016-09-28

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Package sglOptim updated to version 1.3.0 with previous version 1.2.2 dated 2016-09-10

Title: Generic Sparse Group Lasso Solver
Description: Fast generic solver for sparse group lasso optimization problems. The loss (objective) function must be defined in a C++ module. The optimization problem is solved using a coordinate gradient descent algorithm. The algorithm is applicable to a broad class of convex loss functions. Convergence of the algorithm is established (see reference). Use of parallel computing for cross validation and subsampling is supported through the 'foreach' and 'doParallel' packages. Development version is on github, please report package issues on github. Development version is on github, please report package issues on github.
Author: Martin Vincent
Maintainer: Martin Vincent <martin.vincent.dk@gmail.com>

Diff between sglOptim versions 1.2.2 dated 2016-09-10 and 1.3.0 dated 2016-09-28

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Package red updated to version 0.1.1 with previous version 0.1.0 dated 2016-08-23

Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction risk of species according to the IUCN (International Union for Conservation of Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>

Diff between red versions 0.1.0 dated 2016-08-23 and 0.1.1 dated 2016-09-28

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New package ragtop with initial version 0.5
Package: ragtop
Type: Package
Title: Pricing Equity Derivatives with Extensions of Black-Scholes
Version: 0.5
Date: 2016-09-23
Author: Brian K. Boonstra
Maintainer: Brian K. Boonstra <ragtop@boonstra.org>
Description: Algorithms to price American and European equity options, convertible bonds and a variety of other financial derivatives. It uses an extension of the usual Black-Scholes model in which jump to default may occur at a probability specified by a power-law link between stock price and hazard rate as found in the paper by Takahashi, Kobayashi, and Nakagawa (2001) <doi:10.3905/jfi.2001.319302>. We use ideas and techniques from Andersen and Buffum (2002) <doi:10.2139/ssrn.355308> and Linetsky (2006) <doi:10.1111/j.1467-9965.2006.00271.x>.
Depends: limSolve (>= 1.5.5.1), futile.logger (>= 1.4.1), R (>= 2.10), methods (>= 3.2.2)
Suggests: testthat, roxygen2, knitr, rmarkdown, reshape2, stringr, ggplot2, MASS, RColorBrewer, R.cache, Quandl
License: GPL (>= 2)
LazyData: TRUE
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-28 12:47:09 UTC; brian
Repository: CRAN
Date/Publication: 2016-09-28 17:10:48

More information about ragtop at CRAN
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Package QGglmm updated to version 0.5 with previous version 0.4 dated 2016-07-13

Title: Estimate Quantitative Genetics Parameters from Generalised Linear Mixed Models
Description: Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observed phenotypic mean, phenotypic variance and additive genetic variance.
Author: Pierre de Villemereuil <bonamy@horus.ens.fr>
Maintainer: Pierre de Villemereuil <bonamy@horus.ens.fr>

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Package pcalg updated to version 2.4-3 with previous version 2.4-2 dated 2016-09-26

Title: Methods for Graphical Models and Causal Inference
Description: Functions for causal structure learning and causal inference using graphical models. The main algorithms for causal structure learning are PC (for observational data without hidden variables), FCI and RFCI (for observational data with hidden variables), and GIES (for a mix of data from observational studies (i.e. observational data) and data from experiments involving interventions (i.e. interventional data) without hidden variables). For causal inference the IDA algorithm, the Generalized Backdoor Criterion (GBC) and the Generalized Adjustment Criterion (GAC) are implemented.
Author: Markus Kalisch [aut, cre], Alain Hauser [aut], Martin Maechler [aut], Diego Colombo [ctb], Doris Entner [ctb], Patrik Hoyer [ctb], Antti Hyttinen [ctb], Jonas Peters [ctb], Nicoletta Andri [ctb], Emilija Perkovic [ctb], Preetam Nandy [ctb], Philipp Ruetimann [ctb], Daniel Stekhoven [ctb], Manuel Schuerch [ctb]
Maintainer: Markus Kalisch <kalisch@stat.math.ethz.ch>

Diff between pcalg versions 2.4-2 dated 2016-09-26 and 2.4-3 dated 2016-09-28

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Package papayar updated to version 1.0 with previous version 0.0.3 dated 2016-05-12

Title: View Medical Research Images using the Papaya JavaScript Library
Description: Users pass images and objects of class 'nifti' from the 'oro.nifti' package to a Papaya, an interactive lightweight JavaScript viewer. Although many packages can view individual slices or projections of image and matrix data, this package allows for quick and easy interactive browsing of images. The viewer is based off of the Mango software, which is a lightweight medical image viewer.
Author: John Muschelli
Maintainer: John Muschelli <muschellij2@gmail.com>

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Package jiebaR updated to version 0.9.1 with previous version 0.8.1 dated 2016-04-18

Title: Chinese Text Segmentation
Description: Chinese text segmentation, keyword extraction and speech tagging For R.
Author: Qin Wenfeng, and the authors of CppJieba for the included version of CppJieba
Maintainer: Qin Wenfeng <mail@qinwenfeng.com>

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Package histmdl updated to version 0.6-1 with previous version 0.5-1 dated 2016-01-26

Title: A Most Informative Histogram-Like Model
Description: Using the MDL principle, it is possible to estimate parameters for a histogram-like model. The package contains the implementation of such an estimation method.
Author: Jouke Witteveen
Maintainer: Jouke Witteveen <j.witteveen@gmail.com>

Diff between histmdl versions 0.5-1 dated 2016-01-26 and 0.6-1 dated 2016-09-28

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New package elhmc with initial version 1.0.0
Package: elhmc
Type: Package
Title: Sampling from a Empirical Likelihood Bayesian Posterior of Parameters Using Hamiltonian Monte Carlo
Version: 1.0.0
Date: 2016-09-27
Author: Dang Trung Kien <stadtk@nus.edu.sg>, Sanjay Chaudhuri <stasc@nus.edu.sg>, Neo Han Wei <a0086731@u.nus.edu>,
Maintainer: Sanjay Chaudhuri <stasc@nus.edu.sg>
Description: A tool to draw samples from a Empirical Likelihood Bayesian posterior of parameters using Hamiltonian Monte Carlo.
Imports: emplik, plyr, stats
License: GPL-2
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-28 08:03:19 UTC; kiendang
Repository: CRAN
Date/Publication: 2016-09-28 17:10:35

More information about elhmc at CRAN
Permanent link

Package sdmpredictors (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-09-26 0.1.0

Permanent link
Package rcmdcheck updated to version 1.2.1 with previous version 1.1.0 dated 2016-04-16

Title: Run 'R CMD check' from 'R' and Capture Results
Description: Run 'R CMD check' from 'R' programmatically, and capture the results of the individual checks.
Author: Gabor Csardi
Maintainer: Gabor Csardi <gcsardi@mango-solutions.com>

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Package RCircos updated to version 1.2.0 with previous version 1.1.3 dated 2015-12-14

Title: Circos 2D Track Plot
Description: A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.
Author: Hongen Zhang
Maintainer: Hongen Zhang <hzhang.henry@gmail.com>

Diff between RCircos versions 1.1.3 dated 2015-12-14 and 1.2.0 dated 2016-09-28

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More information about RCircos at CRAN
Permanent link

Package lsgl updated to version 1.3.0 with previous version 1.2.1 dated 2016-09-10

Title: Linear Sparse Group Lasso
Description: Linear multiple output using sparse group lasso. The algorithm finds the sparse group lasso penalized maximum likelihood estimator. This result in feature and parameter selection, and parameter estimation. Use of parallel computing for cross validation and subsampling is supported through the 'foreach' and 'doParallel' packages. Development version is on github, please report package issues on github.
Author: Martin Vincent
Maintainer: Martin Vincent <martin.vincent.dk@gmail.com>

Diff between lsgl versions 1.2.1 dated 2016-09-10 and 1.3.0 dated 2016-09-28

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More information about lsgl at CRAN
Permanent link

Package gcbd updated to version 0.2.6 with previous version 0.2.5 dated 2013-12-12

Title: 'GPU'/CPU Benchmarking in Debian-Based Systems
Description: 'GPU'/CPU Benchmarking on Debian-package based systems This package benchmarks performance of a few standard linear algebra operations (such as a matrix product and QR, SVD and LU decompositions) across a number of different 'BLAS' libraries as well as a 'GPU' implementation. To do so, it takes advantage of the ability to 'plug and play' different 'BLAS' implementations easily on a Debian and/or Ubuntu system. The current version supports - 'Reference BLAS' ('refblas') which are un-accelerated as a baseline - Atlas which are tuned but typically configure single-threaded - Atlas39 which are tuned and configured for multi-threaded mode - 'Goto Blas' which are accelerated and multi-threaded - 'Intel MKL' which is a commercial accelerated and multithreaded version. As for 'GPU' computing, we use the CRAN package - 'gputools' For 'Goto Blas', the 'gotoblas2-helper' script from the ISM in Tokyo can be used. For 'Intel MKL' we use the Revolution R packages from Ubuntu 9.10.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between gcbd versions 0.2.5 dated 2013-12-12 and 0.2.6 dated 2016-09-28

 ChangeLog          |   23 +++++++++++++++++++++++
 DESCRIPTION        |   39 +++++++++++++++++++--------------------
 MD5                |   14 +++++++-------
 NAMESPACE          |   11 ++++++++++-
 R/benchmark.R      |   14 +++++++-------
 build/vignette.rds |binary
 inst/doc/gcbd.pdf  |binary
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More information about gcbd at CRAN
Permanent link

New package FuzzyR with initial version 2.0
Package: FuzzyR
Type: Package
Title: Fuzzy Logic Toolkit for R
Version: 2.0
Date: 2016-09-27
Author: Jon Garibaldi, Chao Chen, Tajul Razak
Maintainer: Jon Garibaldi <fuzzyr@cs.nott.ac.uk>
Depends: R (>= 3.0.0)
Imports: splines, shiny, plyr
Description: Design and simulate fuzzy logic systems using Type 1 Fuzzy Logic. This toolkit includes with graphical user interface (GUI) and an adaptive neuro-fuzzy inference system (ANFIS). This toolkit is a continuation from the previous package ('FuzzyToolkitUoN'). Produced by the Intelligent Modelling & Analysis Group, University of Nottingham.
License: GPL (>= 2)
LazyData: TRUE
URL: http://ima.ac.uk
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-27 19:23:26 UTC; psxtrr
Repository: CRAN
Date/Publication: 2016-09-28 08:34:05

More information about FuzzyR at CRAN
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Package easyVerification updated to version 0.3.0 with previous version 0.2.0 dated 2016-01-25

Title: Ensemble Forecast Verification for Large Data Sets
Description: Set of tools to simplify application of atomic forecast verification metrics for (comparative) verification of ensemble forecasts to large data sets. The forecast metrics are imported from the 'SpecsVerification' package, and additional forecast metrics are provided with this package. Alternatively, new user-defined forecast scores can be implemented using the example scores provided and applied using the functionality of this package.
Author: MeteoSwiss [aut, cph], Jonas Bhend [cre], Jacopo Ripoldi [ctb], Claudia Mignani [ctb], Irina Mahlstein [ctb], Rebecca Hiller [ctb], Christoph Spirig [ctb], Mark Liniger [ctb], Andreas Weigel [ctb], Joaqu'in Bedia Jimenez [ctb], Matteo De Felice [ctb]
Maintainer: Jonas Bhend <jonas.bhend@meteoswiss.ch>

Diff between easyVerification versions 0.2.0 dated 2016-01-25 and 0.3.0 dated 2016-09-28

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More information about easyVerification at CRAN
Permanent link

Package DJL updated to version 2.6 with previous version 2.5 dated 2016-08-18

Title: Distance Measure Based Judgment and Learning
Description: Implements various decision support tools related to the new product development. Subroutines include correlation reliability test, Mahalanobis distance measure for outlier detection, combinatorial search (all possible subset regression), non-parametric efficiency analysis measures: DDF (directional distance function), DEA (data envelopment analysis), HDF (hyperbolic distance function), SBM (slack-based measure), and SF (shortage function), benchmarking, risk analysis, technology adoption model, new product target setting, etc.
Author: Dong-Joon Lim, PhD
Maintainer: Dong-Joon Lim <tgno3.com@gmail.com>

Diff between DJL versions 2.5 dated 2016-08-18 and 2.6 dated 2016-09-28

 DESCRIPTION               |    6 -
 MD5                       |   70 ++++++------
 NAMESPACE                 |    4 
 NEWS                      |   23 ++++
 R/DJL-internal.R          |  251 ++++++++++++++++++++++------------------------
 R/dm.ddf.R                |   11 +-
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More information about DJL at CRAN
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Package comf updated to version 0.1.6 with previous version 0.1.5 dated 2016-09-13

Title: Functions for Thermal Comfort Research
Description: Functions to calculate various common and less common thermal comfort indices, convert physical variables, and evaluate the performance of thermal comfort indices.
Author: Marcel Schweiker [aut, cre] and Sophia Mueller [aut] and Michael Kleber [ctr] and Boris Kingma [ctr] and Masanori Shukuya [ctr]
Maintainer: Marcel Schweiker <marcel.schweiker@kit.edu>

Diff between comf versions 0.1.5 dated 2016-09-13 and 0.1.6 dated 2016-09-28

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More information about comf at CRAN
Permanent link

Tue, 27 Sep 2016

Package sbtools updated to version 1.1.6 with previous version 1.1.3 dated 2016-08-19

Title: USGS ScienceBase Tools
Description: Tools for interacting with U.S. Geological Survey ScienceBase <https://www.sciencebase.gov> interfaces. ScienceBase is a data cataloging and collaborative data management platform. Functions included for querying ScienceBase, and creating and fetching datasets.
Author: Tim Kern [cre], Luke Winslow [aut], Scott Chamberlain [aut], Alison Appling [aut], Jordan Read [aut]
Maintainer: Tim Kern <kernt@usgs.gov>

Diff between sbtools versions 1.1.3 dated 2016-08-19 and 1.1.6 dated 2016-09-27

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New package scdhlm with initial version 0.3
Package: scdhlm
Title: Estimating Hierarchical Linear Models for Single-Case Designs
Version: 0.3
Authors@R: person("James", "Pustejovsky", email = "jepusto@gmail.com", role = c("aut", "cre"))
Description: Provides a set of tools for estimating hierarchical linear models and effect sizes based on data from single-case designs. Functions are provided for calculating standardized mean difference effect sizes that are directly comparable to standardized mean differences estimated from between-subjects randomized experiments, as described in Hedges, Pustejovsky, and Shadish (2012) <DOI:10.1002/jrsm.1052>; Hedges, Pustejovsky, and Shadish (2013) <DOI:10.1002/jrsm.1086>; and Pustejovsky, Hedges, and Shadish (2014) <DOI:10.3102/1076998614547577>.
URL: https://github.com/jepusto/scdhlm
BugReports: https://github.com/jepusto/scdhlm/issues
License: GPL-3
VignetteBuilder: knitr
LazyData: true
Imports: stats
Depends: nlme, R (>= 3.0.1)
Suggests: knitr, markdown, rmarkdown, ggplot2, plyr, boot, parallel, shiny, testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-27 15:33:19 UTC; jep2963
Author: James Pustejovsky [aut, cre]
Maintainer: James Pustejovsky <jepusto@gmail.com>
Repository: CRAN
Date/Publication: 2016-09-27 21:29:27

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New package RNHANES with initial version 1.0
Package: RNHANES
Type: Package
Title: Facilitates Analysis of CDC NHANES Data
Version: 1.0
Date: 2016-09-27
Authors@R: c( person("Herb", "Susmann", email="susmann@silentspring.org", role=c("cre", "aut")), person("Silent Spring Institute", role = "cph") )
URL: http://github.com/silentspringinstitute/RNHANES
BugReports: https://github.com/silentspringinstitute/RNHANES/issues
Description: Tools for downloading and analyzing CDC NHANES data, with a focus on analytical laboratory data.
License: Apache License 2.0 | file LICENSE
LazyData: TRUE
Depends: R (>= 2.10)
Imports: foreign, survey, rvest, xml2, methods, dplyr
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-27 15:21:07 UTC; susmann
Author: Herb Susmann [cre, aut], Silent Spring Institute [cph]
Maintainer: Herb Susmann <susmann@silentspring.org>
Repository: CRAN
Date/Publication: 2016-09-27 21:32:39

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Package PCGSE updated to version 0.3 with previous version 0.2 dated 2014-05-07

Title: Principal Component Gene Set Enrichment
Description: Contains logic for computing the statistical association of variable groups, i.e., gene sets, with respect to the principal components of genomic data.
Author: H. Robert Frost
Maintainer: H. Robert Frost <rob.frost@dartmouth.edu>

Diff between PCGSE versions 0.2 dated 2014-05-07 and 0.3 dated 2016-09-27

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Package DynNom updated to version 3.0.1 with previous version 3.0 dated 2016-09-20

Title: Dynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models
Description: Demonstrate the results of a statistical model object as a dynamic nomogram in an 'RStudio' panel or web browser. DynNom supports a variety of model objects; 'lm', 'glm', 'coxph' and also 'Ols', 'Glm', 'lrm', 'cph' models.
Author: Amirhossein Jalali, Davood Roshan, Alberto Alvarez-Iglesias, John Newell
Maintainer: Amirhossein Jalali <a.jalali2@nuigalway.ie>

Diff between DynNom versions 3.0 dated 2016-09-20 and 3.0.1 dated 2016-09-27

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Package blavaan updated to version 0.2-2 with previous version 0.2-1 dated 2016-09-20

Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory factor analysis, structural equation models, and latent growth curve models.
Author: Edgar Merkle [aut, cre], Yves Rosseel [aut]
Maintainer: Edgar Merkle <merklee@missouri.edu>

Diff between blavaan versions 0.2-1 dated 2016-09-20 and 0.2-2 dated 2016-09-27

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Package berryFunctions updated to version 1.12.3 with previous version 1.12.2 dated 2016-09-21

Title: Function Collection Related to Plotting and Hydrology
Description: Draw horizontal histograms, color scattered points by 3rd dimension, enhance date- and log-axis plots, zoom in X11 graphics, use the unit hydrograph in a linear storage cascade, convert lists to data.frames, fit multiple functions by regression (power, reciprocal, exponential, logarithmic, polynomial, rational).
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>

Diff between berryFunctions versions 1.12.2 dated 2016-09-21 and 1.12.3 dated 2016-09-27

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Package GameTheory updated to version 2.4 with previous version 2.0 dated 2015-08-10

Title: Cooperative Game Theory
Description: Implementation of a common set of punctual solutions for Cooperative Game Theory.
Author: Sebastian Cano-Berlanga
Maintainer: Sebastian Cano-Berlanga <cano.berlanga@gmail.com>

Diff between GameTheory versions 2.0 dated 2015-08-10 and 2.4 dated 2016-09-27

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Package sjPlot updated to version 2.1.0 with previous version 2.0.2 dated 2016-07-31

Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data visualization. Results of various statistical analyses (that are commonly used in social sciences) can be visualized using this package, including simple and cross tabulated frequencies, histograms, box plots, (generalized) linear models, mixed effects models, PCA and correlation matrices, cluster analyses, scatter plots, Likert scales, effects plots of regression models (including interaction terms) and much more. This package supports labelled data.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>

Diff between sjPlot versions 2.0.2 dated 2016-07-31 and 2.1.0 dated 2016-09-27

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Package SIDES updated to version 1.6 with previous version 1.5 dated 2016-09-15

Title: Subgroup Identification Based on Differential Effect Search
Description: Provides function to apply "Subgroup Identification based on Differential Effect Search" (SIDES) method proposed by Lipkovich et al. (2011) <doi:10.1002/sim.4289>.
Author: Marie-Karelle Riviere
Maintainer: Marie-Karelle Riviere <eldamjh@gmail.com>

Diff between SIDES versions 1.5 dated 2016-09-15 and 1.6 dated 2016-09-27

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Package qwraps2 updated to version 0.2.2 with previous version 0.2.1 dated 2016-05-30

Title: Quick Wraps 2
Description: A collection of (wrapper) functions the creator found useful for quickly placing data summaries and formatted regression results into '.Rnw' or '.Rmd' files. Functions for generating commonly used graphics, such as receiver operating curves or Bland-Altman plots, are also provided by 'qwraps2'. 'qwraps2' is a updated version of a package 'qwraps'. The original version 'qwraps' was never submitted to CRAN but can be found at <https://github.com/dewittpe/qwraps/>. The implementation and limited scope of the functions within 'qwraps2' <https://github.com/dewittpe/qwraps2/> is fundamentally different from 'qwraps'.
Author: Peter DeWitt [aut, cre], Tell Bennett [ctb]
Maintainer: Peter DeWitt <dewittpe@gmail.com>

Diff between qwraps2 versions 0.2.1 dated 2016-05-30 and 0.2.2 dated 2016-09-27

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Package nontarget updated to version 1.9 with previous version 1.8 dated 2016-03-14

Title: Detecting Isotope, Adduct and Homologue Relations in LC-MS Data
Description: Screening a HRMS data set for peaks related by (1) isotope patterns, (2) different adducts of the same molecule and/or (3) homologue series. The resulting isotopic pattern and adduct groups can then be combined to so-called components, with homologue series information attached. Also allows plotting and filtering HRMS data for mass defects, frequent m/z distances and components vs. non-components.
Author: Martin Loos
Maintainer: Martin Loos <mloos@looscomputing.ch>

Diff between nontarget versions 1.8 dated 2016-03-14 and 1.9 dated 2016-09-27

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Package funrar updated to version 1.0.1 with previous version 1.0.0 dated 2016-07-15

Title: Functional Rarity Indices Computation
Description: Computes functional rarity indices as proposed by Violle et al (accepted). Various indices can be computed using both regional and local information. Functional Rarity combines both the functional aspect of rarity as well as the extent aspect of rarity.
Author: Matthias Grenié [aut, cre], Pierre Denelle [aut], Caroline Tucker [aut]
Maintainer: Matthias Grenié <matthias.grenie@gmail.com>

Diff between funrar versions 1.0.0 dated 2016-07-15 and 1.0.1 dated 2016-09-27

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New package exprso with initial version 0.1.7
Package: exprso
Title: Rapid Implementation of Machine Learning Algorithms for Genomic Data
Version: 0.1.7
URL: http://github.com/tpq/exprso
BugReports: http://github.com/tpq/exprso/issues
Authors@R: c( person("Thomas", "Quinn", email = "contacttomquinn@gmail.com", role = c("aut", "cre")), person("Daniel", "Tylee", email = "dantylee@gmail.com", role = "ctb") )
Description: Supervised machine learning has an increasingly important role in biological studies. However, the sheer complexity of classification pipelines poses a significant barrier to the expert biologist unfamiliar with machine learning. Moreover, many biologists lack the time or technical skills necessary to establish their own pipelines. This package introduces a framework for the rapid implementation of high-throughput supervised machine learning built with the biologist user in mind. Written by biologists, for biologists, this package provides a user-friendly interface that empowers investigators to execute state-of-the-art binary and multi-class classification, including deep learning, with minimal programming experience necessary.
License: GPL-2
LazyData: TRUE
VignetteBuilder: knitr
RoxygenNote: 5.0.1
Imports: cluster, MASS, e1071, lattice, methods, mRMRe, nnet, pathClass, plyr, stats, randomForest, ROCR, sampling
Depends: R (>= 3.2.2), kernlab
Suggests: Biobase, GEOquery, h2o, golubEsets, knitr, limma, magrittr, rmarkdown, testthat
NeedsCompilation: no
Packaged: 2016-09-27 07:00:17 UTC; thom
Author: Thomas Quinn [aut, cre], Daniel Tylee [ctb]
Maintainer: Thomas Quinn <contacttomquinn@gmail.com>
Repository: CRAN
Date/Publication: 2016-09-27 16:39:46

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Package nproc updated to version 2.0.1 with previous version 1.2 dated 2016-08-11

Title: Neyman-Pearson Receiver Operating Characteristics
Description: Given a sample of class 0 and class 1 and a classification method, the package generates the corresponding Neyman-Pearson classifier with a pre-specified type-I error control and Neyman-Pearson Receiver Operating Characteristics.
Author: Yang Feng, Jessica Li and Xin Tong
Maintainer: Yang Feng <yang.feng@columbia.edu>

Diff between nproc versions 1.2 dated 2016-08-11 and 2.0.1 dated 2016-09-27

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Package NHMM updated to version 3.6 with previous version 3.5 dated 2014-11-26

Title: Bayesian Non-Homogenous Markov and Mixture Models (Multiple Time Series)
Description: Bayesian HMM and NHMM modeling for multiple time series. The emission distribution can be mixtures of Gammas, Poissons, Normals and zero inflation is possible.
Author: Tracy Holsclaw
Maintainer: Tracy Holsclaw <iamrandom@iamrandom.com>

Diff between NHMM versions 3.5 dated 2014-11-26 and 3.6 dated 2016-09-27

 DESCRIPTION         |   13 -
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New package neurobase with initial version 1.1.1.1
Package: neurobase
Type: Package
Title: 'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects
Version: 1.1.1.1
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>
Description: Base package for 'Neuroconductor', which includes many helper functions that interact with objects of class 'nifti', implemented by package 'oro.nifti', for reading/writing and also other manipulation functions.
Imports: methods, matrixStats, R.utils, graphics, grDevices, stats, utils
Depends: oro.nifti (>= 0.5.0), R (>= 3.2.0)
License: GPL-2
Suggests: testthat
BugReports: https://github.com/muschellij2/nifti/issues
RoxygenNote: 5.0.1.9000
NeedsCompilation: no
Packaged: 2016-09-26 22:54:15 UTC; johnmuschelli
Repository: CRAN
Date/Publication: 2016-09-27 08:41:48

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Package ecp updated to version 3.0.0 with previous version 2.0.0 dated 2015-05-20

Title: Non-Parametric Multiple Change-Point Analysis of Multivariate Data
Description: Implements various procedures for finding multiple change-points. Two methods make use of dynamic programming and probabilistic pruning, with no distributional assumptions other than the existence of certain absolute moments in one method. Hierarchical and exact search methods are included. All methods return the set of estimated change- points as well as other summary information.
Author: Nicholas A. James, Wenyu Zhang and David S. Matteson
Maintainer: Nicholas A. James <nj89@cornell.edu>

Diff between ecp versions 2.0.0 dated 2015-05-20 and 3.0.0 dated 2016-09-27

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Package corHMM updated to version 1.20 with previous version 1.19 dated 2016-06-13

Title: Analysis of Binary Character Evolution
Description: Fits a hidden rates model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as hidden states in a Markov process and various other functions for evaluating models of binary character evolution.
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Jeffrey C. Oliver <jeffreycoliver@gmail.com>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>

Diff between corHMM versions 1.19 dated 2016-06-13 and 1.20 dated 2016-09-27

 DESCRIPTION  |    8 ++++----
 MD5          |    6 +++---
 R/ancRECON.R |    2 +-
 R/rayDISC.R  |   14 ++++++--------
 4 files changed, 14 insertions(+), 16 deletions(-)

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Mon, 26 Sep 2016

New package TestFunctions with initial version 0.1.0
Package: TestFunctions
Type: Package
Title: Test Functions for Simulation Experiments and Evaluating Optimization and Emulation Algorithms
Version: 0.1.0
Author: Collin Erickson
Maintainer: Collin Erickson <collinberickson@gmail.com>
Description: Test functions are often used to test computer code. They are used in optimization to test algorithms and in metamodeling to evaluate model predictions. This package provides test functions that can be used for any purpose. Some functions are taken from <https://www.sfu.ca/~ssurjano>, but their R code is not used.
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-26 15:46:10 UTC; cbe117
Repository: CRAN
Date/Publication: 2016-09-27 00:42:33

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New package sdmpredictors with initial version 0.1.0
Package: sdmpredictors
Type: Package
Title: Species Distribution Modelling Predictor Datasets from Around the Web
Version: 0.1.0
Date: 2016-09-24
Depends: R (>= 3.2.5), raster (>= 2.5-8), rgdal (>= 1.1-10)
Imports: R.utils (>= 2.4.0), stats, utils,
Authors@R: person("Samuel", "Bosch", email = "mail@samuelbosch.com", role = c("aut", "cre"))
Maintainer: Samuel Bosch <mail@samuelbosch.com>
Description: Terrestrial and marine predictors for species distribution modelling from multiple sources, including WorldClim (http://www.worldclim.org/), Bio- ORACLE (http://www.oracle.ugent.be/) and MARSPEC (http://www.marspec.org/).
License: MIT + file LICENSE
LazyData: true
Suggests: biomod2, dismo, testthat, knitr, rmarkdown
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-09-26 18:12:41 UTC; swbosch
Author: Samuel Bosch [aut, cre]
Repository: CRAN
Date/Publication: 2016-09-27 00:46:34

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New package RSauceLabs with initial version 0.1.6
Package: RSauceLabs
Type: Package
Title: R Wrapper for 'SauceLabs' REST API
Version: 0.1.6
Authors@R: c(person("John", "Harrison", , "johndharrison0@gmail.com", role = c("aut", "cre")))
Description: Retrieve, update, delete job information from <https://saucelabs.com/>. Poll the 'SauceLabs' services current status and access supported platforms. Send and retrieve files from 'SauceLabs' and manage tunnels associated with 'SauceConnect'.
Depends: R (>= 3.0.0),httr,jsonlite,xml2,whisker,data.table
Suggests: covr, testthat
Encoding: UTF-8
License: GPL-3
RoxygenNote: 5.0.1
URL: http://johndharrison.github.io/RSauceLabs/
URLNote: https://github.com/johndharrison/RSauceLabs
BugReports: https://github.com/johndharrison/RSauceLabs/issues
NeedsCompilation: no
Packaged: 2016-09-26 17:15:17 UTC; john
Author: John Harrison [aut, cre]
Maintainer: John Harrison <johndharrison0@gmail.com>
Repository: CRAN
Date/Publication: 2016-09-27 00:44:35

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New package PersomicsArray with initial version 1.0
Package: PersomicsArray
Type: Package
Title: Automated Persomics Array Image Extraction
Version: 1.0
Date: 2016-09-23
Authors@R: person("John", "Smestad", email = "smestad.john@gmail.com", role = c("aut", "cre"))
Author: John Smestad [aut, cre]
Maintainer: John Smestad <smestad.john@gmail.com>
Depends: R (>= 3.1.0), grDevices, jpeg, tiff, stringr, raster, utils, graphics, stats
Description: Automated identification of printed array positions from high content microscopy images and the export of those positions as individual images written to output as multi-layered tiff files.
License: GPL-3
LazyData: TRUE
NeedsCompilation: no
Packaged: 2016-09-26 17:11:45 UTC; m093616
Repository: CRAN
Date/Publication: 2016-09-26 23:59:25

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New package malani with initial version 1.0
Package: malani
Type: Package
Title: Machine Learning Assisted Network Inference
Version: 1.0
Author: Mehrab Ghanat Bari
Maintainer: Mehrab Ghanat Bari <m.ghanatbari@gmail.com>
Description: Find dark genes. These genes are often disregarded due to no detected mutation or differential expression, but are important in coordinating the functionality in cancer networks.
License: GPL-3
LazyData: TRUE
Depends: e1071, stats
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-26 17:54:07 UTC; m157258
Repository: CRAN
Date/Publication: 2016-09-26 23:44:53

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Package GetoptLong updated to version 0.1.5 with previous version 0.1.4 dated 2016-08-14

Title: Parsing Command-Line Arguments and Variable Interpolation
Description: This is yet another command-line argument parser which wraps the powerful Perl module Getopt::Long and with some adaptation for easier use in R. It also provides a simple way for variable interpolation in R.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>

Diff between GetoptLong versions 0.1.4 dated 2016-08-14 and 0.1.5 dated 2016-09-26

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 R/qq.R                               |   20 +++++++++++++++++-
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 inst/doc/variable_interpolation.Rmd  |    6 +++++
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Package circlize updated to version 0.3.9 with previous version 0.3.8 dated 2016-08-14

Title: Circular Visualization
Description: Circular layout is an efficient way for the visualization of huge amounts of information. Here the circlize package provides an implementation of circular layout generation in R as well as an enhancement of available software. The flexibility of this package is based on the usage of low-level graphics functions such that self-defined high-level graphics can be easily implemented by users for specific purposes. Together with the seamless connection between the powerful computational and visual environment in R, circlize gives users more convenience and freedom to design figures for better understanding complex patterns behind multi-dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>

Diff between circlize versions 0.3.8 dated 2016-08-14 and 0.3.9 dated 2016-09-26

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Package BioFTF updated to version 1.2-0 with previous version 1.1-0 dated 2016-09-05

Title: Biodiversity Assessment Using Functional Tools
Description: The main drawback of the most common biodiversity indices is that different measures may lead to different rankings among communities. This instrument overcomes this limit using some functional tools with the diversity profiles. In particular, the derivatives, the curvature, the radius of curvature, the arc length, and the surface area are proposed. The goal of this method is to interpret in detail the diversity profiles and obtain an ordering between different ecological communities on the basis of diversity. In contrast to the typical indices of diversity, the proposed method is able to capture the multidimensional aspect of biodiversity, because it takes into account both the evenness and the richness of the species present in an ecological community.
Author: Fabrizio Maturo [aut, cre], Francesca Fortuna [aut], Tonio Di Battista [aut]
Maintainer: Fabrizio Maturo <f.maturo@unich.it>

Diff between BioFTF versions 1.1-0 dated 2016-09-05 and 1.2-0 dated 2016-09-26

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Package arulesCBA updated to version 1.0.1 with previous version 1.0 dated 2016-08-28

Title: Classification Based on Association Rules
Description: Provides a function to build an association rule-based classifier for data frames, and to classify incoming data frames using such a classifier.
Author: Ian Johnson
Maintainer: Ian Johnson <ianjjohnson@icloud.com>

Diff between arulesCBA versions 1.0 dated 2016-08-28 and 1.0.1 dated 2016-09-26

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Package svgPanZoom updated to version 0.3.3 with previous version 0.3.2 dated 2016-03-09

Title: R 'Htmlwidget' to Add Pan and Zoom to Almost any R Graphic
Description: This 'htmlwidget' provides pan and zoom interactivity to R graphics, including 'base', 'lattice', and 'ggplot2'. The interactivity is provided through the 'svg-pan-zoom.js' library. Various options to the widget can tailor the pan and zoom experience to nearly any user desire.
Author: Anders Riutta et. al. [aut, cph] (svg-pan-zoom.js BSD-licensed library in htmlwidgets/lib, https://github.com/ariutta/svg-pan-zoom), Jorik Tangelder [aut, cph] (hammer.js MIT-licensed touch library in htmlwidgets/lib, https://github.com/hammerjs/hammer), Kent Russell [aut, cre] (R interface to svg-pan-zoom.js)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>

Diff between svgPanZoom versions 0.3.2 dated 2016-03-09 and 0.3.3 dated 2016-09-26

 DESCRIPTION                    |    9 +++++----
 MD5                            |    6 +++---
 NEWS.md                        |    5 +++++
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Package rtweet updated to version 0.3.0 with previous version 0.2.0 dated 2016-08-14

Title: Collecting Twitter Data
Description: An implementation of calls designed to extract and organize Twitter data via Twitter's REST and stream APIs. Functions formulate GET and POST requests and convert response objects to more user friendly structures, e.g., data frames or lists. Specific consideration is given to functions designed to return tweets, friends, and followers.
Author: Michael W. Kearney
Maintainer: Michael W. Kearney <mkearney@ku.edu>

Diff between rtweet versions 0.2.0 dated 2016-08-14 and 0.3.0 dated 2016-09-26

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More information about rtweet at CRAN
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