More information about SphericalCubature at CRAN
Permanent link
Title: Analysis of Multivariate Event Times
Diff between mets versions 0.2.1 dated 2013-04-24 and 0.2.2 dated 2013-05-21
Description: Implementation of various statistical models for
multivariate event history data. Including multivariate
cumulative incidence models, and bivariate random effects
probit models (Liability models)
Author: Klaus K. Holst and Thomas Scheike
Maintainer: Klaus K. Holst
mets-0.2.1/mets/inst/misc/workshop-ts.R |only
mets-0.2.1/mets/inst/misc/workshop.R |only
mets-0.2.1/mets/inst/misc/workshop.org |only
mets-0.2.2/mets/DESCRIPTION | 14
mets-0.2.2/mets/MD5 | 113 +
mets-0.2.2/mets/NAMESPACE | 26
mets-0.2.2/mets/NEWS | 8
mets-0.2.2/mets/R/Dbvn.R | 10
mets-0.2.2/mets/R/aalenfrailty.R | 11
mets-0.2.2/mets/R/bicomprisk.R | 4
mets-0.2.2/mets/R/binomial.twostage.R | 79 +
mets-0.2.2/mets/R/biprobit.R | 26
mets-0.2.2/mets/R/bptwin.R | 486 ++++----
mets-0.2.2/mets/R/casewise.R | 32
mets-0.2.2/mets/R/claytonakes.R | 27
mets-0.2.2/mets/R/clusterindex-reshape.R | 4
mets-0.2.2/mets/R/cor.R | 32
mets-0.2.2/mets/R/cumh.R | 152 ++
mets-0.2.2/mets/R/fastreshape.R | 86 -
mets-0.2.2/mets/R/methodstwinlm.R | 160 +-
mets-0.2.2/mets/R/mets-packages.R | 14
mets-0.2.2/mets/R/phreg.R |only
mets-0.2.2/mets/R/prop-odds.R |only
mets-0.2.2/mets/R/summary.bptwin.R | 66 -
mets-0.2.2/mets/R/twinlm.R | 266 +---
mets-0.2.2/mets/R/twinlm2.R |only
mets-0.2.2/mets/R/twostage.R | 297 ++++
mets-0.2.2/mets/data/datalist | 1
mets-0.2.2/mets/data/mena.rda |only
mets-0.2.2/mets/inst/misc/casewisea.png |only
mets-0.2.2/mets/inst/misc/cif2.png |only
mets-0.2.2/mets/inst/misc/cifMZ.png |only
mets-0.2.2/mets/inst/misc/conc2.png |only
mets-0.2.2/mets/inst/misc/concordance.png |only
mets-0.2.2/mets/inst/misc/cumh.png |only
mets-0.2.2/mets/inst/misc/ipw.png |only
mets-0.2.2/mets/inst/misc/mena.html |only
mets-0.2.2/mets/inst/misc/obs |only
mets-0.2.2/mets/inst/misc/orgmode1.css |only
mets-0.2.2/mets/inst/misc/orgmode2.css |only
mets-0.2.2/mets/inst/misc/pcif.png |only
mets-0.2.2/mets/inst/misc/pcif2.png |only
mets-0.2.2/mets/inst/misc/pcifl.png |only
mets-0.2.2/mets/inst/misc/workshop-run.html |only
mets-0.2.2/mets/inst/misc/workshop.html | 1558 +++++++-------------------
mets-0.2.2/mets/man/ClaytonOakes.Rd | 18
mets-0.2.2/mets/man/Dbvn.Rd | 8
mets-0.2.2/mets/man/aalenfrailty.Rd | 9
mets-0.2.2/mets/man/binomial.twostage.Rd | 9
mets-0.2.2/mets/man/bptwin.Rd | 23
mets-0.2.2/mets/man/casewise.test.Rd | 17
mets-0.2.2/mets/man/cor.cif.Rd | 26
mets-0.2.2/mets/man/easy.binomial.twostage.Rd | 14
mets-0.2.2/mets/man/easy.twostage.Rd |only
mets-0.2.2/mets/man/fast.reshape.Rd | 20
mets-0.2.2/mets/man/internal.Rd | 5
mets-0.2.2/mets/man/mena.Rd |only
mets-0.2.2/mets/man/multcif.Rd | 5
mets-0.2.2/mets/man/phreg.Rd |only
mets-0.2.2/mets/man/prt.Rd | 4
mets-0.2.2/mets/man/random.cif.Rd | 6
mets-0.2.2/mets/man/twinstut.Rd | 4
mets-0.2.2/mets/man/twostage.Rd | 37
mets-0.2.2/mets/src/Makevars | 2
mets-0.2.2/mets/src/claytonoakes.cpp | 7
mets-0.2.2/mets/src/clusterindex.cpp | 30
mets-0.2.2/mets/src/fastcox.cpp |only
mets-0.2.2/mets/src/fastcox.h |only
mets-0.2.2/mets/src/prop-odd.cpp |only
mets-0.2.2/mets/src/tools.cpp | 4
70 files changed, 1807 insertions(+), 1913 deletions(-)
Title: R interface to the iPlant Discovery Environment
Diff between rPlant versions 2.3 dated 2013-03-12 and 2.7 dated 2013-05-21
Description: rPlant is an R interface to the the many computational
resources iPlant offers through their RESTful application
programming interface. Currently, rPlant functions interact
with the iPlant foundational API, the Taxonomic Name Resolution
Service API, and the Phylotastic Taxosaurus API. Before using
rPlant, users will have to register with the iPlant
Collaborative.
http://www.iplantcollaborative.org/discover/discovery-environment
Author: Barb Banbury
Maintainer: Barb Banbury
DESCRIPTION | 15 --
MD5 | 52 +++----
R/RunClustal.R | 17 +-
R/RunMafft.R | 17 +-
R/RunMuscle.R | 17 +-
R/RunParsdna.R | 20 +-
R/RunParsprotein.R | 21 +-
R/RunQuicktree.R | 17 +-
R/RunRAxMLdna.R | 22 +--
R/RunRAxMLprotein.R | 13 +
R/TNRS.R | 1
R/rPlant.R | 357 ++++++++++++++++++++++++++++++++-----------------
data/ex.lp.fasta.rda |binary
man/GetAppList.Rd | 5
man/GetToken.Rd | 6
man/ListDir.Rd | 7
man/RunClustal.Rd | 11 -
man/RunMafft.Rd | 9 -
man/RunMuscle.Rd | 10 -
man/RunParsdna.Rd | 7
man/RunParsprotein.Rd | 8 -
man/RunQuicktree.Rd | 8 -
man/RunRAxMLdna.Rd | 19 +-
man/RunRAxMLprotein.Rd | 10 -
man/SubmitJob.Rd | 25 ++-
man/TNRS.Rd | 3
man/UploadFile.Rd | 46 ++++--
27 files changed, 480 insertions(+), 263 deletions(-)
Title: Linear Latent Variable Models
Diff between lava versions 1.2.0 dated 2013-04-24 and 1.2.1 dated 2013-05-21
Description: Estimation and simulation of latent variable models
Author: Klaus K. Holst
Maintainer: Klaus K. Holst
lava-1.2.0/lava/simulate.R |only
lava-1.2.1/lava/DESCRIPTION | 10
lava-1.2.1/lava/MD5 | 81 +--
lava-1.2.1/lava/NAMESPACE | 2
lava-1.2.1/lava/NEWS | 3
lava-1.2.1/lava/R/Objective.R | 33 -
lava-1.2.1/lava/R/addhook.R | 37 -
lava-1.2.1/lava/R/bootstrap.R | 28 -
lava-1.2.1/lava/R/constrain.R | 25 -
lava-1.2.1/lava/R/covariance.R | 4
lava-1.2.1/lava/R/deriv.R | 55 +-
lava-1.2.1/lava/R/estimate.R | 91 ++-
lava-1.2.1/lava/R/estimate.multigroup.R | 50 +-
lava-1.2.1/lava/R/fix.R | 6
lava-1.2.1/lava/R/gof.R | 8
lava-1.2.1/lava/R/index.sem.R | 7
lava-1.2.1/lava/R/information.R | 33 -
lava-1.2.1/lava/R/labels.R | 4
lava-1.2.1/lava/R/lava-package.R | 2
lava-1.2.1/lava/R/logLik.R | 10
lava-1.2.1/lava/R/matrices.R | 638 +++++++++++++++++++--------
lava-1.2.1/lava/R/missingMLE.R | 34 -
lava-1.2.1/lava/R/modelPar.R | 100 ++--
lava-1.2.1/lava/R/moments.R | 1
lava-1.2.1/lava/R/multigroup.R | 36 +
lava-1.2.1/lava/R/plot.R | 17
lava-1.2.1/lava/R/predict.R | 2
lava-1.2.1/lava/R/residuals.R | 17
lava-1.2.1/lava/R/score.R | 118 ----
lava-1.2.1/lava/R/utils.R | 30 -
lava-1.2.1/lava/R/zblockdiag.R | 7
lava-1.2.1/lava/R/ztr.R | 2
lava-1.2.1/lava/demo/model.R | 2
lava-1.2.1/lava/inst/doc/reference.pdf |binary
lava-1.2.1/lava/inst/tests/test-constrain.R | 41 +
lava-1.2.1/lava/inst/tests/test-multigroup.R | 1
lava-1.2.1/lava/man/bootstrap.lvm.Rd | 8
lava-1.2.1/lava/man/constrain-set.Rd | 2
lava-1.2.1/lava/man/estimate.lvm.Rd | 4
lava-1.2.1/lava/man/gof.Rd | 9
lava-1.2.1/lava/man/internal.Rd | 1
lava-1.2.1/lava/man/labels-set.Rd | 3
42 files changed, 946 insertions(+), 616 deletions(-)
Title: Learn from training data then quickly fill in missing data.
Diff between FastImputation versions 1.0 dated 2012-04-10 and 1.1 dated 2013-05-21
More information about FastImputation at CRAN
Description: TrainFastImputation uses training data to describe a
multivariate normal distribution that the data approximates or
can be transformed into approximating and stores this
information as an object of class FastImputationPatterns. The
FastImputation function uses this FastImputationPatterns object
to impute (make a good guess at) missing data in a single line
or a whole dataframe of data. This approximates the process
used by Amelia [http://gking.harvard.edu/amelia/] but is much
faster when filling in values for a single line of data.
Author: Stephen R. Haptonstahl
Maintainer: Stephen R. Haptonstahl
DESCRIPTION | 14 ++++++++------
MD5 | 25 ++++++++++++++-----------
R/BoundNormalizedVariable.R | 22 ++++++++++++++++++----
R/FastImputation.R | 31 ++++++++++++++++++-------------
R/NormalizeBoundedVariable.R | 21 +++++++++++++++++----
data/FItest.RData |binary
data/FItrain.RData |binary
data/FItrue.RData |binary
inst/tests |only
man/FItest.Rd | 18 +++++++++++++++++-
man/FItrain.Rd | 18 +++++++++++++++++-
man/FItrue.Rd | 20 ++++++++++++++++++--
man/NormalizeBoundedVariable.Rd | 21 +++++++++++++++++++--
tests |only
14 files changed, 146 insertions(+), 44 deletions(-)
Permanent link
Title: Nonparametric Multiple Change Point Analysis of Multivariate
Data
Diff between ecp versions 1.5.2 dated 2013-02-08 and 1.5.3 dated 2013-05-21
Description: This package performs hierarchical change point analysis
through the use of U-statistics. Both agglomerative and
divisive procedures return the set of change points estimates,
and other summary information.
Author: Nicholas A. James and David S. Matteson
Maintainer: Nicholas A. James
ecp-1.5.2/ecp/data/acgh.RData |only
ecp-1.5.2/ecp/data/stpp.RData |only
ecp-1.5.2/ecp/man/acgh.RData.Rd |only
ecp-1.5.2/ecp/man/stpp.RData.Rd |only
ecp-1.5.3/ecp/DESCRIPTION | 19 ++++---
ecp-1.5.3/ecp/MD5 | 38 +++++++--------
ecp-1.5.3/ecp/NEWS | 24 +++++++++
ecp-1.5.3/ecp/R/e_agglomerative.R | 9 ++-
ecp-1.5.3/ecp/R/e_divisive.R | 81 ++++++++++++++++++--------------
ecp-1.5.3/ecp/R/energyChangePoint.R | 3 +
ecp-1.5.3/ecp/data/ACGH.RData |only
ecp-1.5.3/ecp/data/DJIA.RData |binary
ecp-1.5.3/ecp/data/STPP.RData |only
ecp-1.5.3/ecp/data/datalist | 4 -
ecp-1.5.3/ecp/inst/CITATION | 6 +-
ecp-1.5.3/ecp/man/ACGH.RData.Rd |only
ecp-1.5.3/ecp/man/DJIA.RData.Rd | 4 -
ecp-1.5.3/ecp/man/STPP.RData.Rd |only
ecp-1.5.3/ecp/man/e.agglo.Rd | 66 +++++++++++++++++---------
ecp-1.5.3/ecp/man/e.divisive.Rd | 70 ++++++++++++++++-----------
ecp-1.5.3/ecp/man/e.split.Rd | 14 ++---
ecp-1.5.3/ecp/man/sig.test.Rd | 17 +++---
ecp-1.5.3/ecp/man/splitPoint.Rd | 12 ++--
ecp-1.5.3/ecp/src/energyChangePoint.cpp | 36 ++++++++++++++
24 files changed, 265 insertions(+), 138 deletions(-)
Title: Helper package to facilitate the generation of distance matrices
used in the package spacom.
Diff between geospacom versions 0.5-4 dated 2013-03-17 and 0.5-6 dated 2013-05-21
Description: Generates distance matrices from shape files and
represents spatially weighted multilevel analysis results (see
spacom)
Author: Davide Morselli [aut], Mathieu Cossuta [aut, cre], Till Junge
[aut], Sandra Penic [aut], Guy Elcheroth [ctb], Stephanie
Glaeser [ctb]
Maintainer: Davide Morselli
DESCRIPTION | 10 +++++-----
MD5 | 20 ++++++++++----------
R/ReadPoly.R | 2 +-
R/fixholes.R | 9 +++------
data/CH1903.rda |binary
data/GPS.rda |binary
data/yu.reg.rda |binary
man/DistanceMatrix.Rd | 15 ++-------------
man/ImagePoly.Rd | 20 ++++++--------------
man/ReadPoly.Rd | 4 ++--
man/geospacom-package.Rd | 10 +++++-----
11 files changed, 34 insertions(+), 56 deletions(-)
Title: Exact Distributions for Rank and Permutation Tests
Diff between exactRankTests versions 0.8-24 dated 2013-01-12 and 0.8-25 dated 2013-05-21
More information about exactRankTests at CRAN
Description: Computes exact conditional p-values and quantiles using an
implementation of the Shift-Algorithm by Streitberg & Roehmel.
Author: Torsten Hothorn and Kurt Hornik
Maintainer: Torsten Hothorn
DESCRIPTION | 9 +++++----
MD5 | 30 +++++++++++++++---------------
R/perm.test.R | 10 +++++-----
data/ASAT.rda |binary
data/bloodp.rda |binary
data/ears.rda |binary
data/glioma.rda |binary
data/globulin.rda |binary
data/lungcancer.rda |binary
data/neuropathy.rda |binary
data/ocarcinoma.rda |binary
data/rotarod.rda |binary
data/sal.rda |binary
inst/NEWS | 6 ++++++
tests/dtest.R | 16 ++++++++++++----
tests/dtest.Rout.save | 25 ++++++++++++++++++-------
16 files changed, 61 insertions(+), 35 deletions(-)
Permanent link
Title: Fire Weather Index System and Fire Behaviour Prediction System
Calculations
Diff between fwi.fbp versions 1.01 dated 2012-10-30 and 1.2 dated 2013-05-21
Description: This package provides three new functions to calculate the
outputs of the two main components of the Canadian Forest Fire
Danger Rating System (CFFDRS): the Fire Weather Index (FWI)
System and the Fire Behaviour Prediction (FBP) System.
Author: Xianli Wang, Alan Cantin, Marc-Andre Parisien, Mike Wotton,
Kerry Anderson, and Mike Flannigan
Maintainer: Alan Cantin
DESCRIPTION | 12 +-
MD5 | 16 +--
R/fwi.r | 235 ++++++++++++++++++++++++-------------------------
data/test_fbp.csv.gz |binary
data/test_fwi.csv.gz |binary
man/fbp.Rd | 9 +
man/fwi.Rd | 9 +
man/fwi.fbp-package.Rd | 4
man/fwiBAT.Rd | 9 +
9 files changed, 156 insertions(+), 138 deletions(-)
Title: Multivariate Dependence with Copulas
Diff between copula versions 0.999-6 dated 2013-05-14 and 0.999-7 dated 2013-05-21
Description: Classes (S4) of commonly used elliptical, Archimedean,
extreme value and some more copula families. Methods for
density, distribution, random number generation, bivariate
dependence measures, perspective and contour plots. Fitting
copula models including variance estimates. Independence and
serial (univariate and multivariate) independence tests, and
other copula related tests. Goodness-of-fit tests for copulas
based on multipliers, the parametric bootstrap with several
transformation options. Merged former package 'nacopula' for
nested Archimedean copulas: Efficient sampling algorithms,
various estimators, goodness-of-fit tests and related tools and
special functions.
Author: Marius Hofert
Maintainer: Martin Maechler
DESCRIPTION | 10 +++----
MD5 | 16 +++++------
NAMESPACE | 2 -
R/empcop.R | 2 -
R/gofTests.R | 54 +++++++++++++-------------------------
inst/doc/Frank-Rmpfr.pdf |binary
inst/doc/nacopula-pkg.pdf |binary
man/empcop.Rd | 46 ++++++++++++++------------------
man/gofCopula.Rd | 65 ++++++++++++++++++++++++++++++++++------------
9 files changed, 104 insertions(+), 91 deletions(-)
Title: Miscellaneous Useful Functions
Diff between miscFuncs versions 1.2 dated 2012-06-14 and 1.2-2 dated 2013-05-21
Description: LaTeX tables, Kalman filter, web scraping, development
tools
Author: Benjamin M. Taylor
Maintainer: Benjamin M. Taylor
miscFuncs-1.2-2/miscFuncs/DESCRIPTION | 11 -
miscFuncs-1.2-2/miscFuncs/MD5 | 47 +++----
miscFuncs-1.2-2/miscFuncs/NAMESPACE | 10 -
miscFuncs-1.2-2/miscFuncs/R/KFtemplates.R | 3
miscFuncs-1.2-2/miscFuncs/R/latextable.R | 61 +++------
miscFuncs-1.2-2/miscFuncs/R/roxbc.R | 4
miscFuncs-1.2-2/miscFuncs/R/roxtext.R | 4
miscFuncs-1.2-2/miscFuncs/inst/doc/miscFuncs.R |only
miscFuncs-1.2-2/miscFuncs/inst/doc/miscFuncs.Rtex | 8 -
miscFuncs-1.2-2/miscFuncs/inst/doc/miscFuncs.pdf |binary
miscFuncs-1.2-2/miscFuncs/man/EKFadvance.Rd | 61 ++++++---
miscFuncs-1.2-2/miscFuncs/man/KFadvance.Rd | 94 +++++++++-----
miscFuncs-1.2-2/miscFuncs/man/KFadvanceAR2.Rd | 107 +++++++++++------
miscFuncs-1.2-2/miscFuncs/man/KFtemplates.Rd | 18 ++
miscFuncs-1.2-2/miscFuncs/man/bin.Rd | 20 ++-
miscFuncs-1.2-2/miscFuncs/man/generic.Rd | 32 +++--
miscFuncs-1.2-2/miscFuncs/man/getstrbetween.Rd | 37 ++++-
miscFuncs-1.2-2/miscFuncs/man/getwikicoords.Rd | 30 +++-
miscFuncs-1.2-2/miscFuncs/man/latextable.Rd | 61 ++++++---
miscFuncs-1.2-2/miscFuncs/man/method.Rd | 29 +++-
miscFuncs-1.2-2/miscFuncs/man/roxbc.Rd | 25 ++-
miscFuncs-1.2-2/miscFuncs/man/roxtext.Rd | 29 +++-
miscFuncs-1.2-2/miscFuncs/man/timeop.Rd | 20 ++-
miscFuncs-1.2-2/miscFuncs/man/vdc.Rd | 21 ++-
miscFuncs-1.2/miscFuncs/inst/doc/miscFuncs.Rtex.backup |only
miscFuncs-1.2/miscFuncs/man/dot-onAttach.Rd |only
26 files changed, 474 insertions(+), 258 deletions(-)
Title: R tools for making it easier to combine and clean data sets.
Diff between DataCombine versions 0.1.3 dated 2013-05-16 and 0.1.5 dated 2013-05-21
Description: R tools for combining and cleaning data sets, including
filling in missing observations with data from another data
frame.
Author: Christopher Gandrud
Maintainer: Christopher Gandrud
DESCRIPTION | 17 +++++++++--------
MD5 | 15 +++++++++------
NAMESPACE | 3 +++
NEWS | 11 +++++++++++
R/MoveFront.R | 44 +++++++++++++++++++++++++++++---------------
R/slide.R |only
README.md | 20 ++++++++++++++------
man/MoveFront.Rd | 22 +++++++++++++++-------
man/shift.Rd |only
man/slide.Rd |only
10 files changed, 90 insertions(+), 42 deletions(-)
Title: FastICA Algorithms to perform ICA and Projection Pursuit
Diff between fastICA versions 1.1-16 dated 2012-05-21 and 1.2-0 dated 2013-05-21
Description: Implementation of FastICA algorithm to perform Independent
Component Analysis (ICA) and Projection Pursuit.
Author: J L Marchini
Maintainer: Brian Ripley
fastICA-1.1-16/fastICA/cleanup |only
fastICA-1.1-16/fastICA/configure |only
fastICA-1.1-16/fastICA/configure.ac |only
fastICA-1.1-16/fastICA/configure.win |only
fastICA-1.1-16/fastICA/src/Makevars.in |only
fastICA-1.1-16/fastICA/src/Makevars.win |only
fastICA-1.1-16/fastICA/src/lsame.unused |only
fastICA-1.1-16/fastICA/src/sblas.unused |only
fastICA-1.1-16/fastICA/src/slamc.unused |only
fastICA-1.1-16/fastICA/src/slapack.unused |only
fastICA-1.2-0/fastICA/DESCRIPTION | 9 -
fastICA-1.2-0/fastICA/MD5 | 21 --
fastICA-1.2-0/fastICA/NAMESPACE | 2
fastICA-1.2-0/fastICA/R/fastICA.R | 35 ++--
fastICA-1.2-0/fastICA/man/fastICA.Rd | 8 -
fastICA-1.2-0/fastICA/src/Makevars |only
fastICA-1.2-0/fastICA/src/ica.c | 231 ++++++++++++++----------------
17 files changed, 145 insertions(+), 161 deletions(-)
Title: Statistical significance of Sharpe ratio
Diff between SharpeR versions 0.1305 dated 2013-05-11 and 0.1306 dated 2013-05-21
Description: a collection of tools for analyzing significance of
trading strategies, based on the Sharpe ratio and overfit of
the same.
Author: Steven E. Pav
Maintainer: Steven E. Pav
SharpeR-0.1305/SharpeR/inst/doc/SharpeR.R |only
SharpeR-0.1305/SharpeR/inst/doc/SharpeR.Rnw |only
SharpeR-0.1305/SharpeR/inst/doc/SharpeR.bib |only
SharpeR-0.1305/SharpeR/inst/tests/test-estimation.r |only
SharpeR-0.1306/SharpeR/DESCRIPTION | 8
SharpeR-0.1306/SharpeR/MD5 | 49 ++---
SharpeR-0.1306/SharpeR/Makefile | 165 +++++++++++++----
SharpeR-0.1306/SharpeR/R/distributions.r | 18 +
SharpeR-0.1306/SharpeR/R/estimation.r | 20 +-
SharpeR-0.1306/SharpeR/R/sr.r | 10 -
SharpeR-0.1306/SharpeR/R/tests.r | 10 -
SharpeR-0.1306/SharpeR/README.md | 2
SharpeR-0.1306/SharpeR/inst/doc/SharpeR.pdf |binary
SharpeR-0.1306/SharpeR/inst/doc/figure |only
SharpeR-0.1306/SharpeR/inst/doc/index.html |only
SharpeR-0.1306/SharpeR/inst/tests/test-distributions.r | 15 -
SharpeR-0.1306/SharpeR/man/as.sr.Rd | 6
SharpeR-0.1306/SharpeR/man/as.sropt.Rd | 2
SharpeR-0.1306/SharpeR/man/confint.Rd | 8
SharpeR-0.1306/SharpeR/man/dsr.Rd | 12 -
SharpeR-0.1306/SharpeR/man/dsropt.Rd | 2
SharpeR-0.1306/SharpeR/man/inference.Rd | 10 -
SharpeR-0.1306/SharpeR/man/power.sr_test.Rd | 2
SharpeR-0.1306/SharpeR/man/se.Rd | 2
SharpeR-0.1306/SharpeR/man/sr.Rd | 2
SharpeR-0.1306/SharpeR/man/sr_equality_test.Rd | 4
SharpeR-0.1306/SharpeR/man/sr_test.Rd | 2
SharpeR-0.1306/SharpeR/man/sropt_test.Rd | 2
28 files changed, 236 insertions(+), 115 deletions(-)
Title: ML and MCMC Methods for Pedigree Reconstruction and Analysis
Diff between MasterBayes versions 2.50 dated 2012-07-15 and 2.50.1 dated 2013-05-21
Description: The primary aim of MasterBayes is to use MCMC techniques
to integrate over uncertainty in pedigree configurations
estimated from molecular markers and phenotypic data. Emphasis
is put on the marginal distribution of parameters that relate
the phenotypic data to the pedigree. All simulation is done in
compiled C++ for efficiency.
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield
MasterBayes-2.50.1/MasterBayes/DESCRIPTION | 9
MasterBayes-2.50.1/MasterBayes/MD5 | 10
MasterBayes-2.50.1/MasterBayes/src/Makevars | 2
MasterBayes-2.50.1/MasterBayes/src/matrix.h | 350 ++++++++++++------------
MasterBayes-2.50.1/MasterBayes/src/smath.h | 34 +-
MasterBayes-2.50.1/MasterBayes/src/stat.h | 2
MasterBayes-2.50/MasterBayes/inst/doc/.Rhistory |only
7 files changed, 204 insertions(+), 203 deletions(-)
Title: Package required POI jars for the xlsx package
Diff between xlsxjars versions 0.4.0 dated 2012-04-16 and 0.5.0 dated 2013-05-20
Description: The xlsxjars package collects all the external jars
required for the xlxs package. These external jars are quite
large in size (15MB) and have a slow release cycle. By
separating the Java and R development, the storage footprint on
CRAN is reduced. This release corresponds to POI 3.9.
Author: Adrian A. Dragulescu
Maintainer: Adrian A. Dragulescu
xlsxjars-0.4.0/xlsxjars/inst/java/poi-3.8-20120326.jar |only
xlsxjars-0.4.0/xlsxjars/inst/java/poi-ooxml-3.8-20120326.jar |only
xlsxjars-0.4.0/xlsxjars/inst/java/poi-ooxml-schemas-3.8-20120326.jar |only
xlsxjars-0.5.0/xlsxjars/DESCRIPTION | 13 +++++----
xlsxjars-0.5.0/xlsxjars/MD5 | 14 +++++-----
xlsxjars-0.5.0/xlsxjars/NEWS | 5 +++
xlsxjars-0.5.0/xlsxjars/inst/java/poi-3.9-20121203.jar |only
xlsxjars-0.5.0/xlsxjars/inst/java/poi-ooxml-3.9-20121203.jar |only
xlsxjars-0.5.0/xlsxjars/inst/java/poi-ooxml-schemas-3.9-20121203.jar |only
xlsxjars-0.5.0/xlsxjars/man/xlsxjars-package.Rd | 4 +-
xlsxjars-0.5.0/xlsxjars/other/make.package.R | 10 ++-----
11 files changed, 24 insertions(+), 22 deletions(-)
Title: Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
Diff between xlsx versions 0.5.0 dated 2012-09-26 and 0.5.1 dated 2013-05-20
Description: Provide R functions to read/write/format Excel 2007 and
Excel 97/2000/XP/2003 file formats.
Author: Adrian A. Dragulescu
Maintainer: Adrian A. Dragulescu
xlsx-0.5.0/xlsx/inst/java/rexcel-0.5.0.jar |only
xlsx-0.5.0/xlsx/other/target |only
xlsx-0.5.1/xlsx/DESCRIPTION | 9
xlsx-0.5.1/xlsx/MD5 | 60 --
xlsx-0.5.1/xlsx/NEWS | 22
xlsx-0.5.1/xlsx/R/Cell.R | 14
xlsx-0.5.1/xlsx/R/addDataFrame.R | 17
xlsx-0.5.1/xlsx/R/read.xlsx.R | 34 -
xlsx-0.5.1/xlsx/R/read.xlsx2.R | 4
xlsx-0.5.1/xlsx/R/readColumns.R | 6
xlsx-0.5.1/xlsx/R/write.xlsx.R | 12
xlsx-0.5.1/xlsx/inst/doc/xlsx.R |only
xlsx-0.5.1/xlsx/inst/doc/xlsx.pdf |binary
xlsx-0.5.1/xlsx/inst/java/rexcel-0.5.1.jar |only
xlsx-0.5.1/xlsx/inst/tests/lib_test_issues.R |only
xlsx-0.5.1/xlsx/inst/tests/lib_tests_xlsx.R | 15
xlsx-0.5.1/xlsx/inst/tests/test_import.xlsx |binary
xlsx-0.5.1/xlsx/man/Cell.Rd | 6
xlsx-0.5.1/xlsx/man/read.xlsx.Rd | 13
xlsx-0.5.1/xlsx/man/write.xlsx.Rd | 5
xlsx-0.5.1/xlsx/man/xlsx-package.Rd | 15
xlsx-0.5.1/xlsx/other/make.package.R | 64 --
xlsx-0.5.1/xlsx/other/pom.xml | 297 +++++++---
xlsx-0.5.1/xlsx/other/src/main/java/org/cran/rexcel/RInterface.java | 12
xlsx-0.5.1/xlsx/other/src/test/java/org/cran/rexcel/DebugRexcel.java |only
xlsx-0.5.1/xlsx/other/src/test/java/org/cran/rexcel/TestRCellBlock.java | 1
xlsx-0.5.1/xlsx/other/src/test/java/org/cran/rexcel/TestRInterface.java | 24
27 files changed, 431 insertions(+), 199 deletions(-)
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness
estimation
Diff between mgcv versions 1.7-22 dated 2012-10-15 and 1.7-23 dated 2013-05-20
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs. Includes a gam() function.
Author: Simon Wood
Maintainer: Simon Wood
DESCRIPTION | 7 -
MD5 | 64 +++++-----
NAMESPACE | 2
R/bam.r | 4
R/gam.fit3.r | 17 +-
R/gamm.r | 6
R/mgcv.r | 163 +++++++++++++++-----------
R/plots.r | 28 +++-
R/smooth.r | 124 +++++++++++++-------
R/soap.r | 21 +--
changeLog | 61 ++++++++-
man/anova.gam.Rd | 2
man/extract.lme.cov.Rd | 1
man/formXtViX.Rd | 15 ++
man/formula.gam.Rd | 10 +
man/gam.Rd | 14 +-
man/gam.models.Rd | 34 ++---
man/gam.side.Rd | 24 +++
man/ldTweedie.Rd | 4
man/mgcv-package.Rd | 3
man/mroot.Rd | 4
man/smooth.construct.fs.smooth.spec.Rd | 4
man/smooth.construct.tp.smooth.spec.Rd | 6
man/smooth.terms.Rd | 7 -
man/summary.gam.Rd | 10 -
man/te.Rd | 35 +++--
src/init.c | 2
src/mat.c | 203 +++++++++++++++++++++++++--------
src/mgcv.c | 2
src/mgcv.h | 3
src/misc.c | 2
src/soap.c | 6
src/tprs.c | 4
33 files changed, 591 insertions(+), 301 deletions(-)
Title: Package for statistical age models analysis in optically
stimulated luminescence dating
Diff between RadialPlotter versions 1.5 dated 2013-04-20 and 1.6 dated 2013-05-20
Description: Package for estimating parameters of statistical age
models in optically stimulated luminescence dating dynamically.
Author: Peng Jun
Maintainer: Peng Jun
DESCRIPTION | 8
MD5 | 25
NEWS | 3
man/EDdata.Rd | 1
man/RadialPlotter-package.Rd | 6
man/RadialPlotter.Rd | 5
src/MamED.f90 | 2
src/blas.f |only
src/fdhessian.f90 | 137 ++-
src/gradient.f90 | 20
src/kmeans.f90 | 2
src/lbfgsb.f | 1560 ++++++++++++++-----------------------------
src/linpack.f |only
src/pnorm.f90 | 8
src/timer.f |only
15 files changed, 675 insertions(+), 1102 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-04-06 2.4.8
2009-11-17 2.4.6
2009-10-29 2.4.4
2009-09-18 2.4.2
Title: SSD for R to analyze single system data
Diff between SSDforR versions 1.1 dated 2013-04-24 and 1.2 dated 2013-05-20
Description: Package to visually and statistically analyze single
system data
Author: Charles Auerbach,PHD Wendy Zeitlin Schudrich,PHD Wurzweiler
School of Social Work
Maintainer: Charles Auerbach
SSDforR-1.1/SSDforR/R/ABautoacf.R |only
SSDforR-1.1/SSDforR/R/ABautopacf.R |only
SSDforR-1.1/SSDforR/R/Arimadiff.R |only
SSDforR-1.1/SSDforR/R/Arimama.R |only
SSDforR-1.1/SSDforR/R/CDC.R |only
SSDforR-1.1/SSDforR/R/robustCDC.R |only
SSDforR-1.1/SSDforR/man/abarrow.rd |only
SSDforR-1.1/SSDforR/man/cdc.rd |only
SSDforR-1.1/SSDforR/man/robustCDC.Rd |only
SSDforR-1.2/SSDforR/DESCRIPTION | 6 -
SSDforR-1.2/SSDforR/MD5 | 180 +++++++++++++++---------------
SSDforR-1.2/SSDforR/R/ABlineD.R | 6 -
SSDforR-1.2/SSDforR/R/ABlines.R | 4
SSDforR-1.2/SSDforR/R/ABplot.R | 12 +-
SSDforR-1.2/SSDforR/R/ABstat.R | 6 -
SSDforR-1.2/SSDforR/R/ABtext.R | 7 -
SSDforR-1.2/SSDforR/R/ABtsplot.R | 8 +
SSDforR-1.2/SSDforR/R/CDCabove.R |only
SSDforR-1.2/SSDforR/R/CDCbelow.R |only
SSDforR-1.2/SSDforR/R/Gindex.R | 5
SSDforR-1.2/SSDforR/R/RobustCDCabove.R |only
SSDforR-1.2/SSDforR/R/RobustCDCbelow.R |only
SSDforR-1.2/SSDforR/R/Trimline.R | 5
SSDforR-1.2/SSDforR/R/abarrow.r | 21 ++-
SSDforR-1.2/SSDforR/R/abautoacf.r |only
SSDforR-1.2/SSDforR/R/abautopacf.r |only
SSDforR-1.2/SSDforR/R/arimadiff.r |only
SSDforR-1.2/SSDforR/R/arimama.r |only
SSDforR-1.2/SSDforR/man/ABWilcox.Rd | 3
SSDforR-1.2/SSDforR/man/ABanova.Rd | 7 -
SSDforR-1.2/SSDforR/man/ABarrow.Rd |only
SSDforR-1.2/SSDforR/man/ABautoacf.Rd | 3
SSDforR-1.2/SSDforR/man/ABautopacf.Rd | 3
SSDforR-1.2/SSDforR/man/ABbinomial.Rd | 3
SSDforR-1.2/SSDforR/man/ABdescrip.Rd | 3
SSDforR-1.2/SSDforR/man/ABiqr.Rd | 3
SSDforR-1.2/SSDforR/man/ABlineD.Rd | 3
SSDforR-1.2/SSDforR/man/ABlines.Rd | 3
SSDforR-1.2/SSDforR/man/ABma.Rd | 3
SSDforR-1.2/SSDforR/man/ABplot.Rd | 3
SSDforR-1.2/SSDforR/man/ABplotm.Rd | 3
SSDforR-1.2/SSDforR/man/ABregres.Rd | 3
SSDforR-1.2/SSDforR/man/ABrf2.Rd | 3
SSDforR-1.2/SSDforR/man/ABrobust.Rd | 3
SSDforR-1.2/SSDforR/man/ABstat.Rd | 3
SSDforR-1.2/SSDforR/man/ABtext.Rd | 3
SSDforR-1.2/SSDforR/man/ABtsplot.Rd | 3
SSDforR-1.2/SSDforR/man/ABttest.Rd | 3
SSDforR-1.2/SSDforR/man/Aregres.Rd | 3
SSDforR-1.2/SSDforR/man/Arimadiff.Rd | 3
SSDforR-1.2/SSDforR/man/Arimama.Rd | 3
SSDforR-1.2/SSDforR/man/Arobust.Rd | 3
SSDforR-1.2/SSDforR/man/Cchart.Rd | 3
SSDforR-1.2/SSDforR/man/Effectsize.Rd | 3
SSDforR-1.2/SSDforR/man/GABrf2.Rd | 6 -
SSDforR-1.2/SSDforR/man/GABttest.Rd | 15 +-
SSDforR-1.2/SSDforR/man/Gindex.Rd | 3
SSDforR-1.2/SSDforR/man/Gmedian.Rd | 24 ++--
SSDforR-1.2/SSDforR/man/IQRbandgraph.Rd | 5
SSDforR-1.2/SSDforR/man/IQRlegend.Rd | 3
SSDforR-1.2/SSDforR/man/IQRline.Rd | 3
SSDforR-1.2/SSDforR/man/PANDlegend.Rd | 3
SSDforR-1.2/SSDforR/man/PEMabove.Rd | 3
SSDforR-1.2/SSDforR/man/PEMbelow.Rd | 3
SSDforR-1.2/SSDforR/man/PNDbelow.Rd | 3
SSDforR-1.2/SSDforR/man/PNDlegend.Rd | 3
SSDforR-1.2/SSDforR/man/Pchart.Rd | 6 -
SSDforR-1.2/SSDforR/man/Rchart.Rd | 24 ++--
SSDforR-1.2/SSDforR/man/Rchartsd.Rd | 18 ++-
SSDforR-1.2/SSDforR/man/SD1.Rd | 3
SSDforR-1.2/SSDforR/man/SD1legend.Rd | 7 -
SSDforR-1.2/SSDforR/man/SD2.Rd | 7 -
SSDforR-1.2/SSDforR/man/SD2legend.Rd | 3
SSDforR-1.2/SSDforR/man/SDAband.Rd | 3
SSDforR-1.2/SSDforR/man/SPClegend.Rd | 27 +++-
SSDforR-1.2/SSDforR/man/SPCline.Rd | 21 ++-
SSDforR-1.2/SSDforR/man/Trimline.Rd | 3
SSDforR-1.2/SSDforR/man/XRchart.Rd | 24 ++--
SSDforR-1.2/SSDforR/man/Xmrchart.Rd | 3
SSDforR-1.2/SSDforR/man/cdcabove.rd |only
SSDforR-1.2/SSDforR/man/cdcbelow.rd |only
SSDforR-1.2/SSDforR/man/diffchart.Rd | 3
SSDforR-1.2/SSDforR/man/ird.rd | 3
SSDforR-1.2/SSDforR/man/meanabove.rd | 7 -
SSDforR-1.2/SSDforR/man/meanbelow.rd | 7 -
SSDforR-1.2/SSDforR/man/medabove.rd | 7 -
SSDforR-1.2/SSDforR/man/medbelow.rd | 3
SSDforR-1.2/SSDforR/man/pandabove.rd | 3
SSDforR-1.2/SSDforR/man/pandbelow.rd | 3
SSDforR-1.2/SSDforR/man/pemlegend.rd | 3
SSDforR-1.2/SSDforR/man/plotnum.Rd | 3
SSDforR-1.2/SSDforR/man/pndabove.rd | 3
SSDforR-1.2/SSDforR/man/regabove.Rd | 3
SSDforR-1.2/SSDforR/man/regbelow.Rd | 3
SSDforR-1.2/SSDforR/man/robregabove.Rd | 3
SSDforR-1.2/SSDforR/man/robregbelow.Rd | 3
SSDforR-1.2/SSDforR/man/robustCDCabove.Rd |only
SSDforR-1.2/SSDforR/man/robustCDCbelow.Rd |only
SSDforR-1.2/SSDforR/man/sd1bandgraph.rd | 3
SSDforR-1.2/SSDforR/man/sd2bandgraph.rd | 8 +
SSDforR-1.2/SSDforR/man/trimabove.Rd | 3
SSDforR-1.2/SSDforR/man/trimbelow.Rd | 3
102 files changed, 399 insertions(+), 237 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-06-14 1.03
2009-03-21 1.02
2009-03-14 1.01
2009-03-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-19 0.9-9
2008-09-16 0.5-20
2008-02-04 0.5-19
2007-10-09 0.5-18
2007-07-18 0.5-7.1
2007-07-18 0.5-17
2006-08-05 0.5-16
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-05 2.3
2011-11-02 2.2
2011-08-23 2.1.2
2011-07-23 2.1
2011-05-10 1.4
2011-03-30 1.3
2011-03-21 1.2
2011-01-25 1.1
2010-06-18 1.0
Title: Data exchange between R and LabKey Server
Diff between Rlabkey versions 2.1.121 dated 2013-02-14 and 2.1.122 dated 2013-05-20
Description: This package allows an R user to discover, query and
modify data in LabKey Server
Author: Peter Hussey
Maintainer: Cory Nathe
Rlabkey-2.1.121/Rlabkey/license |only
Rlabkey-2.1.122/Rlabkey/DESCRIPTION | 10 +
Rlabkey-2.1.122/Rlabkey/MD5 | 72 ++++++------
Rlabkey-2.1.122/Rlabkey/NEWS | 3
Rlabkey-2.1.122/Rlabkey/R/ifcookie.R | 27 +++-
Rlabkey-2.1.122/Rlabkey/R/labkey.deleteRows.R | 2
Rlabkey-2.1.122/Rlabkey/R/labkey.getFolders.R | 2
Rlabkey-2.1.122/Rlabkey/R/labkey.getQueryInfo.R | 2
Rlabkey-2.1.122/Rlabkey/R/labkey.getQueryLists.R | 2
Rlabkey-2.1.122/Rlabkey/R/labkey.getSchemas.R | 2
Rlabkey-2.1.122/Rlabkey/R/labkey.insertRows.R | 2
Rlabkey-2.1.122/Rlabkey/R/labkey.saveBatch.R | 2
Rlabkey-2.1.122/Rlabkey/R/labkey.selectRows.R | 9 -
Rlabkey-2.1.122/Rlabkey/R/labkey.updateRows.R | 2
Rlabkey-2.1.122/Rlabkey/inst/doc/RlabkeyExample.R |only
Rlabkey-2.1.122/Rlabkey/inst/doc/RlabkeyExample.pdf |binary
Rlabkey-2.1.122/Rlabkey/man/Rlabkey-package.Rd | 4
Rlabkey-2.1.122/Rlabkey/man/getFolderPath.Rd | 3
Rlabkey-2.1.122/Rlabkey/man/getLookups.Rd | 9 +
Rlabkey-2.1.122/Rlabkey/man/getRows.Rd | 3
Rlabkey-2.1.122/Rlabkey/man/getSchema.Rd | 9 +
Rlabkey-2.1.122/Rlabkey/man/getSession.Rd | 30 +++--
Rlabkey-2.1.122/Rlabkey/man/labkey.deleteRows.Rd | 25 ++--
Rlabkey-2.1.122/Rlabkey/man/labkey.executeSql.Rd | 26 ++--
Rlabkey-2.1.122/Rlabkey/man/labkey.getDefaultViewDetails.Rd | 3
Rlabkey-2.1.122/Rlabkey/man/labkey.getFolders.Rd | 6 -
Rlabkey-2.1.122/Rlabkey/man/labkey.getLookupDetails.Rd | 19 ++-
Rlabkey-2.1.122/Rlabkey/man/labkey.getSchemas.Rd | 3
Rlabkey-2.1.122/Rlabkey/man/labkey.insertRows.Rd | 25 ++--
Rlabkey-2.1.122/Rlabkey/man/labkey.saveBatch.Rd | 11 +
Rlabkey-2.1.122/Rlabkey/man/labkey.selectRows.Rd | 14 +-
Rlabkey-2.1.122/Rlabkey/man/labkey.updateRows.Rd | 25 ++--
Rlabkey-2.1.122/Rlabkey/man/lsFolders.Rd | 10 +
Rlabkey-2.1.122/Rlabkey/man/lsProjects.Rd | 3
Rlabkey-2.1.122/Rlabkey/man/lsSchemas.Rd | 6 -
Rlabkey-2.1.122/Rlabkey/man/makeFilter.Rd | 3
Rlabkey-2.1.122/Rlabkey/man/saveResults.Rd | 15 +-
Rlabkey-2.1.122/Rlabkey/src/JSON_parser.h | 2
38 files changed, 239 insertions(+), 152 deletions(-)
Title: Tools for ABC analyses
Diff between abctools versions 0.1-2 dated 2013-02-22 and 0.2 dated 2013-05-20
Description: Tools for approximate Bayesian computation including
summary statistic selection and assessing coverage
Author: Matt Nunes and Dennis Prangle
Maintainer: Matt Nunes
DESCRIPTION | 19 ++++++++++---------
MD5 | 17 ++++++++++++-----
NAMESPACE | 4 +++-
R/cov.mc.R |only
R/cov.pi.R |only
inst |only
man/abctools-package.Rd | 32 +++++++++++++++++++++++---------
man/cov.pi.Rd |only
man/mc.ci.Rd |only
man/semiauto.abc.Rd | 4 ++--
man/stage2.Rd | 6 +++---
11 files changed, 53 insertions(+), 29 deletions(-)
Title: A Tool for Therapeutic Drug Monitoring (TDM)
Diff between tdm versions 2.2.5 dated 2013-03-04 and 2.2.6 dated 2013-05-20
Description: TDM is designed to estimate individual pharmacokinetic
parameters with one or more drug serum/plasma concentrations
obtained from a single subject or multiple subjects using
OpenBUGS (Bayesian inference Using Gibbs Sampling) interfaced
through BRugs and openBUGS. Besides, it also can calculate a
suggested dose with the target drug concentration (C ->D) or
calculate a predicted drug concentration with a given dose (D
-> C).
Author: Miou-ting Chen, Yung-jin Lee
Maintainer: Yung-jin Lee
tdm-2.2.5/tdm/R/drugmenu.R |only
tdm-2.2.5/tdm/man/PhenDemo.model.Rd |only
tdm-2.2.6/tdm/DESCRIPTION | 17 +-
tdm-2.2.6/tdm/MD5 | 34 ++--
tdm-2.2.6/tdm/R/Phe.ms.R | 4
tdm-2.2.6/tdm/R/Phe.ss.R | 2
tdm-2.2.6/tdm/R/PheDemo.R | 53 ++++++-
tdm-2.2.6/tdm/R/War.ss.R | 6
tdm-2.2.6/tdm/R/WarfDemo.R |only
tdm-2.2.6/tdm/R/all.Phess.R | 8 -
tdm-2.2.6/tdm/R/note.R | 241 +++++++++++++++++------------------
tdm-2.2.6/tdm/R/run.R |only
tdm-2.2.6/tdm/R/zzz.R | 13 +
tdm-2.2.6/tdm/demo |only
tdm-2.2.6/tdm/inst/PK/PheSSmodel.txt | 12 -
tdm-2.2.6/tdm/inst/PK/WarSSmodel.txt | 14 +-
tdm-2.2.6/tdm/man/PheDemo.Rd | 4
tdm-2.2.6/tdm/man/WarfDemo.Rd |only
tdm-2.2.6/tdm/man/phenytoin.Rd |only
tdm-2.2.6/tdm/man/run.Rd | 2
tdm-2.2.6/tdm/man/warfarin.Rd |only
21 files changed, 227 insertions(+), 183 deletions(-)
Title: Fitting univariate censored regression model under the scale
mixture of normal distributions.
Diff between SMNCensReg versions 2.0 dated 2013-05-02 and 2.1 dated 2013-05-20
Description: Fit univariate right, left or interval censored regression
model under the scale mixture of normal distributions.
Author: Aldo M. Garay
Maintainer: Aldo M. Garay
DESCRIPTION | 16 ++++++++--------
MD5 | 6 +++---
man/CensReg.SMN.Rd | 9 +++++----
man/wage.rates.Rd | 11 +++++++----
4 files changed, 23 insertions(+), 19 deletions(-)
Title: Probability Models for Ranking Data
Diff between pmr versions 1.1.2 dated 2012-09-14 and 1.2.0 dated 2013-05-20
Description: Descriptive statistics (mean rank, pairwise frequencies,
and marginal matrix), Analytic Hierarchy Process models (with
Saaty's and Koczkodaj's inconsistencies), probability models
(Luce models, distance-based models, and rank-ordered logit
models) and visualization with multidimensional preference
analysis for ranking data are provided. Current, only complete
rankings are supported by this package.
Author: Paul H. Lee and Philip L. H. Yu
Maintainer: Paul H. Lee
DESCRIPTION | 18 ++++++++++++------
MD5 | 32 ++++++++++++++++++++------------
R/ahp.R |only
R/dbm.R | 6 ++++--
R/local.knn.R |only
R/local.knn.cv.R |only
R/pl.R | 1 +
R/rol.R |only
R/wdbm.R | 4 +++-
man/ahp.Rd |only
man/dbm.Rd | 6 +++---
man/destat.Rd | 6 +++---
man/local.knn.Rd |only
man/local.knn.cv.Rd |only
man/mdpref.Rd | 8 ++++----
man/phicom.Rd | 6 +++---
man/pl.Rd | 6 +++---
man/pmr-package.Rd | 8 +++++---
man/rankplot.Rd | 6 +++---
man/rol.Rd |only
man/wdbm.Rd | 9 +++++----
21 files changed, 69 insertions(+), 47 deletions(-)
Title: Export grid graphics as SVG
Diff between gridSVG versions 1.0-0 dated 2013-03-28 and 1.0-1 dated 2013-05-20
Description: Export grid graphics as SVG
Author: Paul Murrell [cre, aut], Simon Potter [aut]
Maintainer: Paul Murrell
DESCRIPTION | 6 +++---
MD5 | 19 +++++++++++--------
inst/doc/animation.R |only
inst/doc/animation.pdf |binary
inst/doc/extensibility.R |only
inst/doc/extensibility.pdf |binary
inst/doc/gridSVG.R |only
inst/doc/gridSVG.pdf |binary
man/grid.animate.Rd | 9 ++-------
man/grid.comment.Rd | 5 +----
man/grid.hyperlink.Rd | 6 ++----
man/grid.script.Rd | 9 +++------
12 files changed, 22 insertions(+), 32 deletions(-)
Title: CoreArray Genomic Data Structure (GDS) R Interface
Diff between gdsfmt versions 0.9.12 dated 2013-02-19 and 0.9.13 dated 2013-05-20
Description: CoreArray project is to develop portable and scalable
storage technologies for bioinformatics data, allowing parallel
computing at the multicore and cluster levels.
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
DESCRIPTION | 9 --
MD5 | 25 +++--
NEWS | 10 ++
R/GDS.all.R | 68 +++++++++-------
inst/CITATION | 8 -
inst/doc/CoreArrayTutorial.R |only
inst/doc/CoreArrayTutorial.pdf |binary
src/CoreGDS.cpp | 1
src/dBase.cpp | 172 ++++++++++++++++++++---------------------
src/dBase.h | 34 +++-----
src/dFile.cpp | 1
src/dStream.cpp | 25 +++--
src/dStream.h | 6 -
src/gdsfmt.cpp | 6 -
14 files changed, 191 insertions(+), 174 deletions(-)
Title: Language Identifier based on CLD library
Diff between cldr versions 1.0.1 dated 2013-01-29 and 1.1.0 dated 2013-05-20
Description: This is an R wrapper for the C++ based Compact language
Detection library based on Chromium project developed by by the
Chromium Authors and further cleaned out by Mike McCandless and
by Matt Sanford. It is used for language identification.
Author: The Chromium Authors, Mike McCandless, Matt Sanford
Maintainer: Aykut FIRAT
DESCRIPTION | 11 ++++++-----
LICENCE | 6 +++++-
MD5 | 12 ++++++------
man/cldr-package.Rd | 12 ++++++------
man/cldr.Rd | 52 ++++++++++++++++++++++++++++++++--------------------
man/constants.Rd | 9 +++++----
src/cldr.cc | 8 ++++----
7 files changed, 64 insertions(+), 46 deletions(-)
Title: POM - Patch Occupancy Models
Diff between pom versions 1.0 dated 2013-05-19 and 1.1 dated 2013-05-19
Description: This package fits a patch occupancy model
Author: Fawn Hornsby, Ryan Nielson, and Trent McDonald
(www.west-inc.com)
Maintainer: Fawn Hornsby
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/PO_Code_FH.r | 4 ++--
3 files changed, 8 insertions(+), 8 deletions(-)
Title: Less Code, More Results
Diff between lessR versions 2.9.2 dated 2013-05-08 and 2.9.3 dated 2013-05-19
Description: Each function accomplishes the work of several or more
standard R functions. For example, two function calls, Read()
and CountAll(), read the data and generate descriptive
statistics for all variables in the data frame, plus histograms
and bar charts as appropriate. Other functions provide for
descriptive statistics, a comprehensive regression analysis,
ANOVA and t-test, plotting, bar chart, histogram, box plot,
density curves, calibrated power curve, the reading and display
of csv and other formatted data and color themes. The function
Help provides a help system that suggests specific analyses and
functions. Variable labels are available. A confirmatory factor
analysis of multiple indicator measurement models is also
available as well as pedagogical routines for data simulation
such as for the Central Limit Theorem.
Author: David W. Gerbing, School of Business Administration, Portland
State University
Maintainer: David W. Gerbing
DESCRIPTION | 11 +++----
MD5 | 30 ++++++++++----------
NAMESPACE | 3 --
NEWS | 44 ++++++++++++++++++++++++++++++
R/LineChart.R | 2 -
R/Read.R | 40 ++++++---------------------
R/bc.zmain.R | 23 +++++++++++++---
R/details.R | 13 +++------
R/lc.zmain.R | 9 +++++-
R/simCLT.R | 76 ++++++++++++++++++++++++++++-------------------------
R/zzz.R | 8 ++---
man/Correlation.Rd | 2 -
man/LineChart.Rd | 5 ++-
man/Read.Rd | 32 ++++++----------------
man/Regression.Rd | 11 ++++++-
man/simCLT.Rd | 2 -
16 files changed, 177 insertions(+), 134 deletions(-)
Title: Probit-Normal Marginalized Transition Random Effects Models
Diff between pnmtrem versions 1.2 dated 2013-02-03 and 1.3 dated 2013-05-19
Description: An R package for Probit-Normal Marginalized Transition
Random Effects Models
Author: Ozgur Asar, Ozlem Ilk
Maintainer: Ozgur Asar
DESCRIPTION | 11 ++++++-----
MD5 | 6 +++---
man/pnmtrem.Rd | 13 +++----------
man/pnmtrem1.Rd | 4 ++--
4 files changed, 14 insertions(+), 20 deletions(-)
Title: Analysis of Oceanographic data
Diff between oce versions 0.9-8 dated 2013-04-25 and 0.9-10 dated 2013-05-19
Description: Supports the analysis of Oceanographic data, including ADP
measurements, CTD measurements, sectional data, sea-level time
series, coastline files, etc. Provides functions for
calculating seawater properties such as potential temperature
and density, as well as derived properties such as buoyancy
frequency and dynamic height.
Author: Dan Kelley
Maintainer: Dan Kelley
DESCRIPTION | 8 ++++----
MD5 | 34 +++++++++++++++++-----------------
NEWS | 8 ++++++++
R/ctd.R | 15 ++++++++-------
R/map.R | 4 ++--
inst/doc/oce.pdf |binary
man/as.tdr.Rd | 4 ++--
man/binmapAdp.Rd | 2 +-
man/ctdDecimate.Rd | 2 +-
man/drawDirectionField.Rd | 6 ++++--
man/drawPalette.Rd | 8 ++++----
man/levitus.Rd | 4 ++--
man/makeFilter.Rd | 12 +++++++-----
man/plotInset.Rd | 3 ++-
man/plotTS.Rd | 4 +++-
man/read.cm.Rd | 2 +-
man/resizableLabel.Rd | 4 ++--
man/swRho.Rd | 3 ++-
18 files changed, 70 insertions(+), 53 deletions(-)
Title: Fast Nearest Neighbor Search Algorithms and Applications
Diff between FNN versions 0.6-4 dated 2012-10-17 and 1.0 dated 2013-05-19
Description: A collection of fast k-nearest neighbor search algorithms
and applications including a cover-tree, kd-tree and the
nearest neighbor algorithm in package class. In addition, KNN
classification, regression and information measures are also
implemented.
Author: Shengqiao Li
Maintainer: Shengqiao Li
FNN-0.6-4/FNN/inst |only
FNN-1.0/FNN/ChangeLog | 6 +
FNN-1.0/FNN/DESCRIPTION | 9 +
FNN-1.0/FNN/MD5 | 22 +---
FNN-1.0/FNN/R/KNN.R | 21 +++-
FNN-1.0/FNN/R/KNN.information.measures.R | 5 -
FNN-1.0/FNN/man/knn.Rd | 126 +++++++++++++--------------
FNN-1.0/FNN/man/knn.cv.Rd | 122 +++++++++++++-------------
FNN-1.0/FNN/man/ownn.rd | 91 +++++++++----------
FNN-1.0/FNN/src/KNN_VR.cpp | 143 +++++++++++++++----------------
10 files changed, 279 insertions(+), 266 deletions(-)
Title: Discrimination of Alternative Reproductive Tactics (ARTs).
Diff between discrimARTs versions 0.1 dated 2013-04-18 and 0.2 dated 2013-05-19
Description: 'discrimARTs' discriminates with explicit confidence the
alternative reproductive tactics (ARTs) in dimorphic systems
with bimodal traits by computing the maximum likelihood
estimate of a mixture of distributions of a measured ARTs
trait. Supported distributions include a mixture of 2 normal
distributions and a mixture of 2 facing gamma distributions.
Author: J. Mark Rowland, Clifford Qualls, and Christian Gunning
Maintainer: Clifford Qualls,
DESCRIPTION | 20 ++--
MD5 | 14 +--
man/discrimARTs-package.Rd | 19 +---
man/mix.loglik.Rd | 119 ++++++++++++-------------
man/mix.mle.Rd | 209 ++++++++++++++++++++++-----------------------
man/mix.synthetic.Rd | 143 +++++++++++++++---------------
man/o_taurus.Rd | 61 ++++++++-----
man/x_gideon.Rd | 25 ++---
8 files changed, 314 insertions(+), 296 deletions(-)
Title: Defines some physical constants and dielectric functions
commonly used in optics, plasmonics.
Diff between dielectric versions 0.2 dated 2012-03-04 and 0.2.2 dated 2013-05-19
Description: Physical constants. Gold, silver and glass permittivities,
together with spline interpolation functions.
Author: Baptiste Auguie [aut, cre] (the original data have their
original source listed in the help file.)
Maintainer: Baptiste Auguie
dielectric-0.2.2/dielectric/DESCRIPTION | 17 +++++++++----
dielectric-0.2.2/dielectric/MD5 | 27 +++++++++++++--------
dielectric-0.2.2/dielectric/NAMESPACE | 2 +
dielectric-0.2.2/dielectric/NEWS | 14 ++--------
dielectric-0.2.2/dielectric/R/drude.r | 2 -
dielectric-0.2.2/dielectric/R/metals.r |only
dielectric-0.2.2/dielectric/data/AgPalik.rda |binary
dielectric-0.2.2/dielectric/data/AuJC.rda |binary
dielectric-0.2.2/dielectric/data/aSi.rda |only
dielectric-0.2.2/dielectric/demo/00Index | 1
dielectric-0.2.2/dielectric/demo/AgPalik.r | 4 +--
dielectric-0.2.2/dielectric/demo/AuJC.r | 2 -
dielectric-0.2.2/dielectric/demo/Si.r |only
dielectric-0.2.2/dielectric/inst/rawdata/AuAg.r | 13 ++++++----
dielectric-0.2.2/dielectric/inst/rawdata/silicon.r |only
dielectric-0.2.2/dielectric/man/aSi.Rd |only
dielectric-0.2.2/dielectric/man/epsAg.Rd |only
dielectric-0.2.2/dielectric/man/epsAu.Rd |only
dielectric-0.2/dielectric/.gitignore |only
19 files changed, 47 insertions(+), 35 deletions(-)
Title: Bridging the gap between qualitative data and quantitative
analysis
Diff between qdap versions 0.2.1 dated 2013-03-13 and 0.2.2 dated 2013-05-18
Description: This package automates many of the tasks associated with
quantitative discourse analysis of transcripts containing
discourse including frequency counts of sentence types, words,
sentences, turns of talk, syllables and other assorted analysis
tasks. The package provides parsing tools for preparing
transcript data. Many functions enable the user to aggregate
data by any number of grouping variables providing analysis and
seamless integration with other R packages that undertake
higher level analysis and visualization of text. This affords
the user a more efficient and targeted analysis.
Author: Tyler Rinker
Maintainer: Tyler Rinker
DESCRIPTION | 32 ++--
MD5 | 229 +++++++++++++++++-----------------
NAMESPACE | 5
NEWS | 44 ++++++
R/Search.R | 2
R/bag.o.words.R | 2
R/beg2char.R |only
R/bracketX.R | 43 ++++--
R/cm_combine.dummy.R | 2
R/cm_d2l.R | 2
R/cm_debug.R | 2
R/cm_debug2.R | 2
R/cm_df.transcript.R | 2
R/cm_df2long.R | 2
R/cm_distance.R | 2
R/cm_long2dummy.R | 2
R/cm_r2l.R | 2
R/cm_range.temp.R | 2
R/cm_time.temp.R | 2
R/cm_time2long.R | 2
R/colsplit2df.R | 2
R/combine_tot.R | 2
R/common.R | 2
R/diversity.R | 2
R/duplicates.R | 2
R/end_mark.R | 2
R/formality.R | 2
R/gantt.R | 4
R/gantt_plot.R | 2
R/gantt_rep.R | 2
R/gradient_cloud.R | 18 +-
R/is.dp.R | 2
R/key_merge.R | 2
R/kullback.leibler.R | 2
R/left.just.R | 4
R/lookup.R | 2
R/multiscale.R | 2
R/ncutWORDS.R | 2
R/ngrams.R |only
R/numfor.R | 2
R/outlier.detect.R | 2
R/pos.R | 2
R/potential_NA.R | 2
R/prop.R | 2
R/qcombine.R | 2
R/qcv.R | 2
R/qprep.R | 2
R/question_type.R | 2
R/read.docx.R | 2
R/read.transcript.R | 8 +
R/replace_number.R | 2
R/replacer.R | 90 ++++++++-----
R/scrubber.R | 8 -
R/sentSplit.R | 2
R/spaste.R | 2
R/stopwords.R | 2
R/syllable.sum.R | 4
R/synonyms.R | 2
R/term.count.R | 2
R/term.find.R | 2
R/termco.R | 71 +++++++++-
R/termco.h.R | 2
R/termco.p.R | 2
R/termco2short.term.R | 2
R/tot_plot.R |only
R/trans.cloud.R | 4
R/trans.venn.R | 2
R/url_dl.R | 11 +
R/v.outer.R | 2
R/wfm.R | 2
R/word.count.R | 2
R/word.network.plot.R | 2
data/BuckleySaltonSWL.rda |binary
data/DATA.rda |binary
data/DATA2.rda |binary
data/DICTIONARY.rda |binary
data/OnixTxtRetToolkitSWL1.rda |binary
data/SYNONYM.rda |binary
data/Top100Words.rda |binary
data/Top200Words.rda |binary
data/Top25Words.rda |binary
data/abbreviations.rda |binary
data/action.verbs.rda |binary
data/adverb.rda |binary
data/contractions.rda |binary
data/emoticon.rda |binary
data/env.syl.rda |binary
data/env.syn.rda |binary
data/increase.amplification.words.rda |binary
data/interjections.rda |binary
data/labMT.rda |binary
data/mraja1.rda |binary
data/mraja1spl.rda |binary
data/negation.words.rda |binary
data/negative.words.rda |binary
data/positive.words.rda |binary
data/preposition.rda |binary
data/raj.act.1.rda |binary
data/raj.act.2.rda |binary
data/raj.act.3.rda |binary
data/raj.act.4.rda |binary
data/raj.act.5.rda |binary
data/raj.demographics.rda |binary
data/raj.rda |binary
data/rajPOS.rda |binary
data/rajSPLIT.rda |binary
inst/CITATION | 4
man/beg2char.Rd |only
man/bracketX.Rd | 9 -
man/gantt.Rd | 9 -
man/gradient_cloud.Rd | 26 ++-
man/ngrams.Rd |only
man/print.ngram.Rd |only
man/scrubber.Rd | 5
man/syllabication.Rd | 10 -
man/tot_plot.Rd |only
man/trans.cloud.Rd | 2
man/url_dl.Rd | 4
man/word.network.plot.Rd | 2
119 files changed, 465 insertions(+), 289 deletions(-)
Title: Conduct univariate and bivariate wavelet analyses
Diff between biwavelet versions 0.15 dated 2013-04-23 and 0.16 dated 2013-05-18
Description: This is a port of the WTC MATLAB package written by Aslak
Grinsted and the wavelet program written by Christopher
Torrence and Gibert P. Compo. This package can be used to
perform univariate and bivariate (cross-wavelet, wavelet
coherence, wavelet clustering) analyses.
Author: Tarik C. Gouhier, Aslak Grinsted
Maintainer: Tarik C. Gouhier
ChangeLog | 5 +++++
DESCRIPTION | 12 ++++++------
MD5 | 24 ++++++++++++------------
R/phase.plot.R | 6 +++---
R/plot.biwavelet.R | 6 +++---
R/wt.R | 3 ++-
R/wtc.R | 4 ++--
R/wtc.sig.R | 9 ++++++---
inst/NEWS.Rd | 12 ++++++++++++
man/biwavelet-package.Rd | 4 ++--
man/plot.biwavelet.Rd | 8 ++++++++
man/wtc.Rd | 5 ++++-
man/wtc.sig.Rd | 5 ++++-
13 files changed, 69 insertions(+), 34 deletions(-)
Title: Miscellaneous useful functions
Diff between rje versions 1.4 dated 2013-05-17 and 1.5 dated 2013-05-18
Description: A series of useful functions, some available in different
forms in other packages, but which have been extended or
modified in some way considered useful to the author.
Author: Robin Evans
Maintainer: Robin Evans
ChangeLog | 2 ++
DESCRIPTION | 10 +++++-----
MD5 | 10 ++++++----
R/fsapply.R |only
man/fsapply.Rd |only
man/indexBox.Rd | 2 ++
man/rje-package.Rd | 4 ++--
7 files changed, 17 insertions(+), 11 deletions(-)
Title: Parametric Frailty Models
Diff between parfm versions 2.5.2 dated 2012-11-06 and 2.5.3 dated 2013-05-18
Description: Parametric Frailty Models, fitted by maximum marginal
likelihood method. Possible baseline hazards: Weibull, inverse
Weibull, exponential, Gompertz, lognormal and loglogistic
Possible Frailty distributions: gamma, inverse Gaussian,
positive stable and lognormal
Author: Federico Rotolo
Maintainer: Federico Rotolo
DESCRIPTION | 12 ++++++---
MD5 | 28 +++++++++++-----------
R/frailtydistros.R | 58 +++++++++++++++++++++++++---------------------
R/parfm.R | 1
data/asthma.RData |binary
data/culling.RData |binary
data/diagnosis.RData |binary
data/ecf.RData |binary
data/insem.RData |binary
data/insemtvc.RData |binary
data/mastitis.RData |binary
data/reconstitution.RData |binary
man/anova.parfm.Rd | 5 ++-
man/diagnosis.Rd | 3 --
man/parfm.Rd | 2 -
15 files changed, 60 insertions(+), 49 deletions(-)
Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase,
...
Diff between foreign versions 0.8-53 dated 2013-03-19 and 0.8-54 dated 2013-05-18
Description: Functions for reading and writing data stored by
statistical packages such as Minitab, S, SAS, SPSS, Stata,
Systat, ..., and for reading and writing dBase files.
Author: R Core Team [aut, cph, cre], Roger Bivand [ctb, cph], Vincent
J. Carey [ctb, cph], Saikat DebRoy [ctb, cph], Stephen Eglen
[ctb, cph], Rajarshi Guha [ctb, cph], Nicholas Lewin-Koh [ctb,
cph], Mark Myatt [ctb, cph], Ben Pfaff [ctb], Frank Warmerdam
[ctb, cph], Stephen Weigand [ctb, cph], Free Software
Foundation, Inc. [cph]
Maintainer: R Core Team
ChangeLog | 15 ++
DESCRIPTION | 8 -
MD5 | 17 +-
R/read.dta.R | 11 +
man/read.dta.Rd | 7 -
man/write.dta.Rd | 19 ++-
src/stataread.c | 234 +++++++++++++++++++++++++++++++---------
tests/MLLabelsWithNotesChar.dta |only
tests/stata.R | 24 ++--
tests/stata.Rout.save | 83 +++++++++++---
10 files changed, 324 insertions(+), 94 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-29 1.15
2011-02-18 1.3
Title: Circos 2D Track Plot
Diff between RCircos versions 1.0.2 dated 2013-03-08 and 1.1.0 dated 2013-05-17
Description: RCircos package provides a simple and flexible way to
generate Circos 2D track plot images for genomic data
visualization. The types of plots include: heatmap, histogram,
lines, scatterplot, tiles and plot items for further
decorations include connector, links, and text (gene) label.
All functions require only R graphics package that comes with R
base installation.
Author: Hongen Zhang
Maintainer: Hongen Zhang
RCircos-1.0.2/RCircos/data/datalist |only
RCircos-1.0.2/RCircos/man/RCircos.Base.Plot.Positions.Rd |only
RCircos-1.0.2/RCircos/man/RCircos.Chromosome.Ideogram.Rd |only
RCircos-1.0.2/RCircos/man/RCircos.Connector.Rd |only
RCircos-1.0.2/RCircos/man/RCircos.Cytoband.Data.Rd |only
RCircos-1.0.2/RCircos/man/RCircos.Gene.Label.Rd |only
RCircos-1.0.2/RCircos/man/RCircos.Get.Label.Locations.Rd |only
RCircos-1.0.2/RCircos/man/RCircos.Heatmap.Rd |only
RCircos-1.0.2/RCircos/man/RCircos.Histogram.Rd |only
RCircos-1.0.2/RCircos/man/RCircos.Reset.Ideogram.Position.Rd |only
RCircos-1.0.2/RCircos/man/RCircos.ScatterPlot.Rd |only
RCircos-1.1.0/RCircos/DESCRIPTION | 15
RCircos-1.1.0/RCircos/MD5 | 85
RCircos-1.1.0/RCircos/NAMESPACE | 2
RCircos-1.1.0/RCircos/R/RCircos.R | 3032 +++++++---
RCircos-1.1.0/RCircos/demo/RCircos.Demo.Human.R | 219
RCircos-1.1.0/RCircos/demo/RCircos.Demo.Mouse.And.Rat.R | 265
RCircos-1.1.0/RCircos/demo/RCircos.Gene.Connector.Demo.R | 116
RCircos-1.1.0/RCircos/demo/RCircos.Heatmap.Demo.R | 94
RCircos-1.1.0/RCircos/demo/RCircos.Histogram.Demo.R | 94
RCircos-1.1.0/RCircos/demo/RCircos.Layout.Demo.R | 110
RCircos-1.1.0/RCircos/demo/RCircos.Line.Plot.Demo.R | 80
RCircos-1.1.0/RCircos/demo/RCircos.Link.Plot.Demo.R | 101
RCircos-1.1.0/RCircos/demo/RCircos.Scatter.Plot.Demo.R | 93
RCircos-1.1.0/RCircos/demo/RCircos.Tile.Plot.Demo.R | 96
RCircos-1.1.0/RCircos/inst/doc/RCircos-manual.pdf |binary
RCircos-1.1.0/RCircos/inst/doc/RCircos.pdf |binary
RCircos-1.1.0/RCircos/man/RCircos-package.Rd | 16
RCircos-1.1.0/RCircos/man/RCircos.Chromosome.Ideogram.Plot.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Data.Point.Rd | 15
RCircos-1.1.0/RCircos/man/RCircos.Env.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Gene.Connector.Plot.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Gene.Name.Plot.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Get.Gene.Label.Locations.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Get.Plot.Data.Rd | 16
RCircos-1.1.0/RCircos/man/RCircos.Get.Plot.Ideogram.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Get.Plot.Parameters.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Get.Plot.Positions.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Heatmap.Plot.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Histogram.Plot.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Initialize.Parameters.Rd | 69
RCircos-1.1.0/RCircos/man/RCircos.Line.Plot.Rd | 65
RCircos-1.1.0/RCircos/man/RCircos.Link.Line.Rd | 21
RCircos-1.1.0/RCircos/man/RCircos.Link.Plot.Rd | 64
RCircos-1.1.0/RCircos/man/RCircos.List.Parameters.Rd | 47
RCircos-1.1.0/RCircos/man/RCircos.Multiple.Species.Core.Components.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Multiple.Species.Dataset.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Reset.Plot.Parameters.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Scatter.Plot.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Set.Base.Plot.Positions.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Set.Core.Components.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Set.Cytoband.data.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Set.Plot.Area.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Tile.Plot.Rd | 70
RCircos-1.1.0/RCircos/man/RCircos.Track.Outline.Rd | 70
RCircos-1.1.0/RCircos/man/RCircos.Track.Positions.Rd | 19
RCircos-1.1.0/RCircos/man/RCircos.Validate.Cyto.Info.Rd |only
RCircos-1.1.0/RCircos/man/RCircos.Validate.Genomic.Data.Rd | 16
RCircos-1.1.0/RCircos/man/RCircos.Workflow.Rd |only
59 files changed, 3118 insertions(+), 1772 deletions(-)
More information about CfEstimateQuantiles at CRAN
Permanent link
Title: Simultaneous Inference in General Parametric Models
Diff between multcomp versions 1.2-17 dated 2013-03-15 and 1.2-18 dated 2013-05-17
Description: Simultaneous tests and confidence intervals for general
linear hypotheses in parametric models, including linear,
generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented in
the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre], Frank Bretz [aut], Peter Westfall
[aut], Richard M. Heiberger [ctb], Andre Schuetzenmeister [ctb]
Maintainer: Torsten Hothorn
multcomp-1.2-17/multcomp/vignettes/chfls1.R |only
multcomp-1.2-18/multcomp/DESCRIPTION | 8 -
multcomp-1.2-18/multcomp/MD5 | 28 ++--
multcomp-1.2-18/multcomp/R/plot.R | 6
multcomp-1.2-18/multcomp/data/cholesterol.rda |binary
multcomp-1.2-18/multcomp/data/litter.rda |binary
multcomp-1.2-18/multcomp/inst/NEWS | 5
multcomp-1.2-18/multcomp/inst/doc/chfls1.R |only
multcomp-1.2-18/multcomp/inst/doc/chfls1.pdf |binary
multcomp-1.2-18/multcomp/inst/doc/generalsiminf.R |only
multcomp-1.2-18/multcomp/inst/doc/generalsiminf.pdf |binary
multcomp-1.2-18/multcomp/inst/doc/multcomp-examples.R |only
multcomp-1.2-18/multcomp/inst/doc/multcomp-examples.pdf |binary
multcomp-1.2-18/multcomp/man/cml.Rd | 6
multcomp-1.2-18/multcomp/tests/Examples/multcomp-Ex.Rout.save | 66 +++++-----
multcomp-1.2-18/multcomp/tests/bugfix.R | 7 +
multcomp-1.2-18/multcomp/tests/bugfix.Rout.save | 20 +--
17 files changed, 85 insertions(+), 61 deletions(-)
Title: Coordinate Descent Algorithms for Lasso Penalized L1, L2, and
Logistic Regression
Diff between CDLasso versions 1.0 dated 2013-03-20 and 1.1 dated 2013-05-17
Description: Coordinate Descent Algorithms for Lasso Penalized L1, L2,
and Logistic Regression
Author: Edward Grant, Kenneth Lange, Tong Tong Wu
Maintainer: Edward Grant
DESCRIPTION | 6 +++---
MD5 | 38 +++++++++++++++++++-------------------
R/cv.l1.reg.default.R | 4 +++-
R/cv.l2.reg.default.R | 4 +++-
R/cv.logit.reg.default.R | 3 ++-
R/l1.reg.default.R | 3 ++-
R/l2.reg.default.R | 3 ++-
R/logit.reg.default.R | 1 +
R/print.cv.l1.reg.R | 3 +++
R/print.cv.l2.reg.R | 3 +++
R/print.cv.logit.reg.R | 3 +++
R/print.l1.reg.R | 3 +++
R/print.l2.reg.R | 3 +++
R/print.logit.reg.R | 3 +++
R/summary.l1.reg.R | 3 +++
R/summary.l2.reg.R | 3 +++
R/summary.logit.reg.R | 3 +++
man/CDLasso-package.Rd | 2 +-
man/cv.l1.reg.Rd | 2 +-
src/CDLasso.f90 | 10 ++++++----
20 files changed, 70 insertions(+), 33 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-25 1.2-1
2009-10-05 1.2-0
2009-09-24 1.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-25 1.2-1
2009-10-05 1.2-0
2009-09-24 1.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-20 0.2-5
2009-10-09 0.2-3
2009-09-24 0.2-2
2008-08-08 0.1-2
2008-01-28 0.1-1
2008-01-07 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-15 2.2.1
2012-01-27 2.0.0
2011-02-01 1.1.0
2008-08-11 1.0
2007-10-10 0.949
2007-08-25 0.946
2007-07-10 0.945
2006-10-27 0.925
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-25 1.2-1
2009-10-05 1.2-0
2009-09-24 1.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-16 1.5-4
2010-12-22 1.5-3
2009-05-24 1.5-2
2007-09-27 1.5-1
2006-12-19 1.5-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-01-25 1.0.2
2011-01-24 1.0.1
2011-01-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-25 1.2-1
2009-10-05 1.2-0
2009-09-24 1.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-10 1.0.0
2012-10-05 0.4
2012-07-26 0.3
2012-05-09 0.2
Title: Quandl Data Connection
Diff between Quandl versions 1.5 dated 2013-03-19 and 2.0 dated 2013-05-17
Description: This package interacts directly with the Quandl API to
offer data in a number of formats usable in R, as well as the
ability to upload and search.
Author: Raymond McTaggart, Gergely Daroczi
Maintainer: Raymond McTaggart
DESCRIPTION | 15 ++++++++-------
MD5 | 14 +++++++++-----
NAMESPACE | 3 +++
R/Quandl.R | 37 +++++++++++++++++++++++++++++++------
R/Quandlpush.R |only
R/Quandlsearch.R |only
README.md | 25 ++++++++++++++-----------
man/Quandl.Rd | 9 ++++++---
man/Quandl.push.Rd |only
man/Quandl.search.Rd |only
10 files changed, 71 insertions(+), 32 deletions(-)
Title: Classification and Regression Training
Diff between caret versions 5.15-61 dated 2013-02-12 and 5.16-04 dated 2013-05-17
Description: Misc functions for training and plotting classification
and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer, Allan Engelhardt and Tony Cooper
Maintainer: Max Kuhn
DESCRIPTION | 32 +++----
MD5 | 55 ++++++------
NAMESPACE | 2
R/createGrid.R | 16 ++-
R/createModel.R | 213 ++++++++++++++++++++++++++-----------------------
R/maxDissim.R | 1
R/misc.R | 6 +
R/modelLookup.R | 84 ++++++++++++++++---
R/preProcess.R | 61 +++++++++++++-
R/predictionFunction.R | 34 +++++++
R/predictors.R | 3
R/print.train.R | 1
R/probFunction.R | 4
R/rfe.R | 2
R/selectByFilter.R | 8 -
R/selection.R | 8 -
R/train.default.R | 9 +-
R/twoClassSim.R |only
R/workflows.R | 15 ++-
data/datalist | 2
inst/NEWS.Rd | 61 ++++++++++++++
inst/doc/caret.R |only
inst/doc/caret.Rnw | 2
inst/doc/caret.pdf |binary
man/calibration.Rd | 4
man/caret-internal.Rd | 3
man/postResample.Rd | 7 +
man/preProcess.Rd | 10 +-
man/twoClassSim.Rd |only
vignettes/caret.Rnw | 2
30 files changed, 459 insertions(+), 186 deletions(-)
Title: Binomial linear and linear-expit regression
Diff between blm versions 2013.2.4.2 dated 2013-04-17 and 2013.2.4.3 dated 2013-05-17
Description: Implements regression models for binary data on the
absolute risk scale. These models are applicable to cohort and
population-based case-control data.
Author: S. Kovalchik
Maintainer: S.Kovalchik
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NEWS | 7 ++++++-
R/blm.R | 2 +-
R/influence_measures.R | 1 -
R/predict.se.blm.R | 8 ++++----
man/blm-package.Rd | 4 ++--
7 files changed, 23 insertions(+), 19 deletions(-)
Title: Miscellaneous useful functions
Diff between rje versions 1.3 dated 2013-03-15 and 1.4 dated 2013-05-17
Description: A series of useful functions, some available in different
forms in other packages, but which have been extended or
modified in some way considered useful to the author.
Author: Robin Evans
Maintainer: Robin Evans
ChangeLog | 10 ++++------
DESCRIPTION | 10 +++++-----
MD5 | 36 +++++++++++++++++++++++-------------
NAMESPACE | 1 +
R/and0.R |only
R/arrayInd.R |only
R/combinations.R | 3 ++-
R/condition.table2.R | 2 +-
R/ddirichlet.R | 2 +-
R/indexBox.R |only
R/last.R |only
R/or0.R |only
R/patternRepeat.R | 39 +++++++++++++++++++++------------------
R/powerSetMat.R | 2 +-
R/quickSort.R | 2 +-
R/setmatch.R | 2 +-
R/subsetmatch.R | 2 +-
man/and0.Rd |only
man/arrayInd.Rd |only
man/indexBox.Rd |only
man/last.Rd |only
man/patternRepeat.Rd | 6 +++++-
man/rje-package.Rd | 4 ++--
src |only
24 files changed, 69 insertions(+), 52 deletions(-)
Title: Weather Data Download from WWW.METEOGALICIA.COM
Diff between readMETEO versions 1.0 dated 2013-05-16 and 1.1 dated 2013-05-17
Description: This package allows to download weather data from
MeteoGalicia.com (10-minutes, daily, monthly) from all
stations, automatically.
Author: Dominic Roye
Maintainer: Dominic Roye
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/readMETEO.R | 18 ++++++++++++------
man/readMETEO-package.Rd | 4 ++--
4 files changed, 21 insertions(+), 15 deletions(-)
Title: Simulation of ordinal and discrete variables with given
correlation matrix and marginal distributions
Diff between GenOrd versions 1.0.1 dated 2012-04-06 and 1.1.0 dated 2013-05-17
Description: The package implements a procedure for generating samples
from ordinal/discrete random variables with pre-specified
correlation matrix and marginal distributions.
Author: Alessandro Barbiero, Pier Alda Ferrari
Maintainer: Alessandro Barbiero
DESCRIPTION | 9 +-
MD5 | 18 ++--
R/contord.R | 126 +++++++++++++------------------
R/corrcheck.R | 199 +++++++++++++++++++++-----------------------------
doc/GenOrd-manual.pdf |binary
man/GenOrd-package.Rd | 7 +
man/contord.Rd | 2
man/corrcheck.Rd | 4 -
man/ordcont.Rd | 8 +-
man/ordsample.Rd | 41 +++++++---
10 files changed, 191 insertions(+), 223 deletions(-)
Title: Functions for phonetics in R.
Diff between phonTools versions 0.1-6 dated 2013-02-11 and 0.2-0 dated 2013-05-17
Description: The functions contained in this package are intended to
facilitate the organization, display, and analysis of the sorts
of data frequently encountered in phonetics research and
experimentation, including the easy creation of IPA vowel
plots. Some functions also allow for the creation and
manipulation of sounds saved as WAV files.
Author: Santiago Barreda
Maintainer: Santiago Barreda
phonTools-0.1-6/phonTools/LICENSE |only
phonTools-0.1-6/phonTools/R/normalization.compare.R |only
phonTools-0.1-6/phonTools/R/snipsound.R |only
phonTools-0.1-6/phonTools/man/snipsound.Rd |only
phonTools-0.2-0/phonTools/ChangeLog |only
phonTools-0.2-0/phonTools/DESCRIPTION | 14 -
phonTools-0.2-0/phonTools/MD5 | 184 ++++++++++++--------
phonTools-0.2-0/phonTools/NAMESPACE | 2
phonTools-0.2-0/phonTools/NEWS |only
phonTools-0.2-0/phonTools/R/FIRfilter.R | 24 +-
phonTools-0.2-0/phonTools/R/Ffilter.R | 100 +++++-----
phonTools-0.2-0/phonTools/R/PSTM.R | 7
phonTools-0.2-0/phonTools/R/anova.rcr.R | 3
phonTools-0.2-0/phonTools/R/combocalc.R |only
phonTools-0.2-0/phonTools/R/createtemplate.R | 4
phonTools-0.2-0/phonTools/R/findformants.R |only
phonTools-0.2-0/phonTools/R/freqresponse.R |only
phonTools-0.2-0/phonTools/R/hotelling.test.R | 3
phonTools-0.2-0/phonTools/R/imputeformants.R | 3
phonTools-0.2-0/phonTools/R/interpolate.R | 18 -
phonTools-0.2-0/phonTools/R/ipainfo.R |only
phonTools-0.2-0/phonTools/R/ldaclassify.R |only
phonTools-0.2-0/phonTools/R/loadsound.R | 3
phonTools-0.2-0/phonTools/R/loadtable.R |only
phonTools-0.2-0/phonTools/R/lpc.R |only
phonTools-0.2-0/phonTools/R/makesound.R | 3
phonTools-0.2-0/phonTools/R/multiplot.R | 5
phonTools-0.2-0/phonTools/R/normalize.R | 22 ++
phonTools-0.2-0/phonTools/R/normalize.compare.R |only
phonTools-0.2-0/phonTools/R/ntypes.R |only
phonTools-0.2-0/phonTools/R/peakfind.R |only
phonTools-0.2-0/phonTools/R/pickIPA.R |only
phonTools-0.2-0/phonTools/R/plot.rcr.R | 3
phonTools-0.2-0/phonTools/R/plot.sound.R | 3
phonTools-0.2-0/phonTools/R/plot.spectrogram.R | 9
phonTools-0.2-0/phonTools/R/plot.template.R | 3
phonTools-0.2-0/phonTools/R/polezero.R |only
phonTools-0.2-0/phonTools/R/powertrack.R | 9
phonTools-0.2-0/phonTools/R/preemphasis.R |only
phonTools-0.2-0/phonTools/R/print.anova.rcr.R | 3
phonTools-0.2-0/phonTools/R/print.hotelling.test.R | 3
phonTools-0.2-0/phonTools/R/print.rcr.R | 3
phonTools-0.2-0/phonTools/R/print.sound.R | 3
phonTools-0.2-0/phonTools/R/print.spectrogram.R | 3
phonTools-0.2-0/phonTools/R/print.summary.rcr.R | 3
phonTools-0.2-0/phonTools/R/rcr.R | 3
phonTools-0.2-0/phonTools/R/reduce.fraction.R |only
phonTools-0.2-0/phonTools/R/resample.R | 40 ++--
phonTools-0.2-0/phonTools/R/rmvtnorm.R | 3
phonTools-0.2-0/phonTools/R/sdellipse.R | 9
phonTools-0.2-0/phonTools/R/sinc.R | 3
phonTools-0.2-0/phonTools/R/sinusoid.R | 15 -
phonTools-0.2-0/phonTools/R/snip.R |only
phonTools-0.2-0/phonTools/R/spectralslice.R | 32 ++-
phonTools-0.2-0/phonTools/R/spectrogram.R | 127 ++++---------
phonTools-0.2-0/phonTools/R/summary.rcr.R | 3
phonTools-0.2-0/phonTools/R/vowelplot.R | 55 +++--
phonTools-0.2-0/phonTools/R/vowelsynth.R | 29 +--
phonTools-0.2-0/phonTools/R/windowfunc.R | 20 --
phonTools-0.2-0/phonTools/R/writesound.R | 3
phonTools-0.2-0/phonTools/R/xsampatoIPA.R |only
phonTools-0.2-0/phonTools/data/a96.rda |only
phonTools-0.2-0/phonTools/data/b95.rda |only
phonTools-0.2-0/phonTools/data/f73.rda |only
phonTools-0.2-0/phonTools/data/f99.rda |only
phonTools-0.2-0/phonTools/data/h95.rda |binary
phonTools-0.2-0/phonTools/data/p73.rda |only
phonTools-0.2-0/phonTools/data/pb52.rda |binary
phonTools-0.2-0/phonTools/data/t07.rda |only
phonTools-0.2-0/phonTools/data/voweldata.rda |only
phonTools-0.2-0/phonTools/data/y96.rda |only
phonTools-0.2-0/phonTools/man/FIRfilter.Rd | 14 -
phonTools-0.2-0/phonTools/man/Ffilter.Rd | 7
phonTools-0.2-0/phonTools/man/PSTM.Rd | 22 --
phonTools-0.2-0/phonTools/man/a96.Rd |only
phonTools-0.2-0/phonTools/man/b95.Rd |only
phonTools-0.2-0/phonTools/man/combocalc.Rd |only
phonTools-0.2-0/phonTools/man/createtemplate.Rd | 17 -
phonTools-0.2-0/phonTools/man/f73.Rd |only
phonTools-0.2-0/phonTools/man/f99.Rd |only
phonTools-0.2-0/phonTools/man/findformants.Rd |only
phonTools-0.2-0/phonTools/man/freqresponse.Rd |only
phonTools-0.2-0/phonTools/man/h95.Rd | 6
phonTools-0.2-0/phonTools/man/imputeformants.Rd | 4
phonTools-0.2-0/phonTools/man/interpolate.Rd | 10 -
phonTools-0.2-0/phonTools/man/ldclassify.Rd |only
phonTools-0.2-0/phonTools/man/loadsound.Rd | 35 ---
phonTools-0.2-0/phonTools/man/loadtable.Rd |only
phonTools-0.2-0/phonTools/man/lpc.Rd |only
phonTools-0.2-0/phonTools/man/makesound.Rd | 25 --
phonTools-0.2-0/phonTools/man/multiplot.Rd | 4
phonTools-0.2-0/phonTools/man/normalize.Rd | 10 -
phonTools-0.2-0/phonTools/man/normalize.compare.Rd | 38 +---
phonTools-0.2-0/phonTools/man/ntypes.Rd |only
phonTools-0.2-0/phonTools/man/p73.Rd |only
phonTools-0.2-0/phonTools/man/pb52.Rd | 6
phonTools-0.2-0/phonTools/man/peakfind.Rd |only
phonTools-0.2-0/phonTools/man/pickIPA.Rd |only
phonTools-0.2-0/phonTools/man/polezero.Rd |only
phonTools-0.2-0/phonTools/man/powertrack.Rd | 14 -
phonTools-0.2-0/phonTools/man/preemphasis.Rd |only
phonTools-0.2-0/phonTools/man/reduce.fraction.Rd |only
phonTools-0.2-0/phonTools/man/resample.Rd | 36 +--
phonTools-0.2-0/phonTools/man/rmvtnorm.Rd | 6
phonTools-0.2-0/phonTools/man/sdellipse.Rd | 32 +--
phonTools-0.2-0/phonTools/man/sinc.Rd | 9
phonTools-0.2-0/phonTools/man/sinusoid.Rd | 36 +--
phonTools-0.2-0/phonTools/man/snip.Rd |only
phonTools-0.2-0/phonTools/man/sound.Rd | 26 --
phonTools-0.2-0/phonTools/man/spectralslice.Rd | 41 ++--
phonTools-0.2-0/phonTools/man/spectrogram.Rd | 47 +----
phonTools-0.2-0/phonTools/man/t07.Rd |only
phonTools-0.2-0/phonTools/man/voweldata.Rd |only
phonTools-0.2-0/phonTools/man/vowelplot.Rd | 59 ++----
phonTools-0.2-0/phonTools/man/vowelsynth.Rd | 30 +--
phonTools-0.2-0/phonTools/man/windowfunc.Rd | 26 --
phonTools-0.2-0/phonTools/man/writesound.Rd | 8
phonTools-0.2-0/phonTools/man/xsampatoIPA.Rd |only
phonTools-0.2-0/phonTools/man/y96.Rd |only
119 files changed, 645 insertions(+), 705 deletions(-)
Title: Functions for updating and installing a new version of R and
other software - from R
Diff between installr versions 0.9 dated 2013-03-29 and 0.9.2 dated 2013-05-16
Description: The 'installr' package aims at making the process of
updating R on Windows as easy as possible. Also, the package
contains a (growing) set of functions for allowing users to
install new software (on Windows OS) using R. By simply running
the installr() function, the user can easily select (via a GUI
interface) a software to install. There are also dedicated
functions for installing each software, such as: updateR(),
install.Rtools(), install.pandoc(), and many more. While for
Linux users, the installation process of new software may be
just running a short line of code, for the regular Windows user
it often includes browsing online, finding the latest version,
downloading it, running the installer, and deleting the
installation file. All of these steps are automatically done
using functions in this package.
Author: Tal Galili
Maintainer: Tal Galili
DESCRIPTION | 13 +
MD5 | 54 ++++----
NAMESPACE | 4
NEWS | 69 ++++++++--
R/install.r | 220 +++++++++++++++++++++++++++++----
R/os.manage.r | 24 ++-
R/updateR.r | 149 ++++++++++++++++++++--
R/zzz.r | 20 +--
README.md | 8 -
man/ask.user.for.a.row.Rd | 7 -
man/ask.user.yn.question.Rd | 12 +
man/browse.latest.R.NEWS.Rd |only
man/checkMD5sums2.Rd |only
man/copy.packages.between.libraries.Rd | 11 +
man/cranometer.Rd |only
man/file.name.from.url.Rd | 3
man/get.installed.R.folders.Rd | 12 +
man/install.GraphicsMagick.Rd | 7 -
man/install.ImageMagick.Rd | 5
man/install.Rtools.Rd | 8 -
man/install.URL.Rd | 4
man/install.npptor.Rd | 7 -
man/install.pandoc.Rd | 8 -
man/os.hibernate.Rd | 4
man/os.lock.Rd | 4
man/os.manage.Rd | 7 -
man/os.shutdown.Rd | 5
man/os.sleep.Rd | 4
man/require2.Rd |only
man/updateR.Rd | 17 ++
30 files changed, 553 insertions(+), 133 deletions(-)
Title: Functions for optimal matching
Diff between optmatch versions 0.8-1 dated 2013-01-03 and 0.8-3 dated 2013-05-16
Description: Functions for optimal matching, including full matching
Author: Ben B. Hansen
Maintainer: Mark M. Fredrickson
optmatch-0.8-1/optmatch/R/pscore.dist.R |only
optmatch-0.8-1/optmatch/checkoutput.txt |only
optmatch-0.8-1/optmatch/tmp.txt |only
optmatch-0.8-1/optmatch/vignettes |only
optmatch-0.8-3/optmatch/DESCRIPTION | 35 -
optmatch-0.8-3/optmatch/MD5 | 77 +--
optmatch-0.8-3/optmatch/NAMESPACE | 7
optmatch-0.8-3/optmatch/NEWS | 24 +
optmatch-0.8-3/optmatch/R/InfinitySparseMatrix.R | 43 +-
optmatch-0.8-3/optmatch/R/boxplot-methods.R |only
optmatch-0.8-3/optmatch/R/caliper.R | 5
optmatch-0.8-3/optmatch/R/deprecated.R |only
optmatch-0.8-3/optmatch/R/fill.NAs.R | 4
optmatch-0.8-3/optmatch/R/fullmatch.R | 4
optmatch-0.8-3/optmatch/R/makedist.R | 14
optmatch-0.8-3/optmatch/R/match_on.R | 193 ++++++----
optmatch-0.8-3/optmatch/R/matched.R | 4
optmatch-0.8-3/optmatch/R/mdist.R | 45 ++
optmatch-0.8-3/optmatch/R/pairmatch.R | 5
optmatch-0.8-3/optmatch/R/summary.optmatch.R | 2
optmatch-0.8-3/optmatch/bigdatatest.R |only
optmatch-0.8-3/optmatch/data/plantdist.rda |binary
optmatch-0.8-3/optmatch/debug_bad_case.rda |only
optmatch-0.8-3/optmatch/debug_no_within.rda |only
optmatch-0.8-3/optmatch/inst/examples/caliper.R | 18
optmatch-0.8-3/optmatch/inst/examples/makeInfinitySparseMatrix.R | 7
optmatch-0.8-3/optmatch/inst/examples/match_on.R | 7
optmatch-0.8-3/optmatch/inst/tests/test.InfinitySparseMatrix.R | 8
optmatch-0.8-3/optmatch/inst/tests/test.caliper.R | 8
optmatch-0.8-3/optmatch/inst/tests/test.fullmatch.R | 15
optmatch-0.8-3/optmatch/inst/tests/test.match_on.R | 56 ++
optmatch-0.8-3/optmatch/man/caliper-methods.Rd | 20 -
optmatch-0.8-3/optmatch/man/exactMatch.Rd | 3
optmatch-0.8-3/optmatch/man/fill.NAs.rd | 26 +
optmatch-0.8-3/optmatch/man/fullmatch.Rd | 4
optmatch-0.8-3/optmatch/man/makeInfinitySparseMatrix.Rd | 7
optmatch-0.8-3/optmatch/man/match_on-methods.Rd | 142 +++++--
optmatch-0.8-3/optmatch/man/optmatch-defunct.Rd |only
optmatch-0.8-3/optmatch/man/pairmatch.Rd | 4
optmatch-0.8-3/optmatch/src/mahalanobisHelper.c |only
optmatch-0.8-3/optmatch/src/subsetInfSparseMatrix.c |only
optmatch-0.8-3/optmatch/tests/mdist.R | 17
optmatch-0.8-3/optmatch/tests/mdist.Rout.save | 23 -
43 files changed, 594 insertions(+), 233 deletions(-)
Title: Distributed Lag Non-linear Models
Diff between dlnm versions 1.6.6 dated 2013-04-05 and 1.6.8 dated 2013-05-16
Description: The package dlnm contains functions to specify and run
distributed lag linear and non-linear models.
Author: Antonio Gasparrini and Ben Armstrong
Maintainer: Antonio Gasparrini
DESCRIPTION | 10 +++++-----
MD5 | 29 +++++++++++++++--------------
R/crossreduce.R | 2 +-
R/summary.crossreduce.R | 1 +
inst/CITATION | 35 ++---------------------------------
inst/ChangeLog | 12 ++++++++++++
inst/doc/dlnmOverview.R |only
inst/doc/dlnmOverview.Rnw | 2 +-
inst/doc/dlnmOverview.pdf |binary
man/chicagoNMMAPS.Rd | 4 ++--
man/crossbasis.Rd | 3 +--
man/crosspred.Rd | 2 +-
man/crossreduce.Rd | 3 +--
man/dlnm-package.Rd | 2 +-
man/onebasis.Rd | 3 +--
man/plot.crossreduce.Rd | 2 +-
16 files changed, 45 insertions(+), 65 deletions(-)
Title: genome-wide SNP association analysis
Diff between GenABEL versions 1.7-4 dated 2013-02-23 and 1.7-6 dated 2013-05-16
Description: a package for genome-wide association analysis between
quantitative or binary traits and single-nucleotide
polymorphisms (SNPs).
Author: GenABEL project developers
Maintainer: Yurii Aulchenko
CHANGES.LOG | 576 +++++++++++++++++++++--------------------
DESCRIPTION | 10
MD5 | 88 +++---
R/ccfast.R | 2
R/ccfast.new.R | 2
R/cocohet.R | 389 ++++++++++++++-------------
R/egscore.R | 68 ++++
R/export.plink.R | 144 ++++++----
R/hom.R | 79 +++++
R/ibs.R | 19 -
R/load.gwaa.data.R | 2
R/polygenic.R | 9
R/qtscore.R | 2
R/snp.names.R | 2
R/zzz.R | 4
inst/doc/GenABEL-tutorial.pdf |binary
inst/unitTests/runit.exports.R | 18 +
man/GenABEL.Rd | 2
man/catable.Rd | 3
man/ccfast.Rd | 3
man/check.marker-class.Rd | 6
man/check.marker.Rd | 13
man/cocohet.Rd | 118 +++++---
man/convert.snp.affymetrix.Rd | 3
man/convert.snp.mach.Rd | 3
man/egscore.Rd | 156 ++++++-----
man/egscore.old.Rd | 3
man/emp.qtscore.Rd | 4
man/export.merlin.Rd | 7
man/export.plink.Rd | 2
man/hom.Rd | 161 ++++++-----
man/hom.old.Rd | 3
man/ibs.Rd | 19 -
man/ibs.old.Rd | 3
man/merge.snp.data.Rd | 3
man/mmscore.Rd | 3
man/npsubtreated.Rd | 9
man/plot.check.marker.Rd | 3
man/qtscore.Rd | 2
man/scan.haplo.2D.Rd | 3
man/scan.haplo.Rd | 3
man/snp.subset.Rd | 3
man/srdta.Rd | 3
src/export_plink.cpp | 14
src/frutil.cpp | 1
45 files changed, 1166 insertions(+), 804 deletions(-)
Title: Flexible writing of snpStats objects to flat files
Diff between snpStatsWriter versions 1.0.2 dated 2013-01-28 and 1.5-1 dated 2013-05-16
More information about snpStatsWriter at CRAN
Description: Write snpStats objects to disk in formats suitable for
reading by snphap, phase, mach, IMPUTE, beagle, and (almost)
anything else that expects a rectangular format.
Author: Chris Wallace
Maintainer: Chris Wallace
ChangeLog | 16 ++++++++++++++++
DESCRIPTION | 11 +++++++----
MD5 | 15 ++++++++++-----
NAMESPACE | 1 +
R/write.R | 48 ++++++++++++++++++++++++++++++++++++++++++++++++
README.md |only
inst |only
man/write.snphap.Rd |only
src/writers.c | 12 ++++++------
9 files changed, 88 insertions(+), 15 deletions(-)
Permanent link
Title: Visualizing the performance of scoring classifiers.
Diff between ROCR versions 1.0-4 dated 2009-12-14 and 1.0-5 dated 2013-05-16
Description: ROC graphs, sensitivity/specificity curves, lift charts,
and precision/recall plots are popular examples of trade-off
visualizations for specific pairs of performance measures. ROCR
is a flexible tool for creating cutoff-parameterized 2D
performance curves by freely combining two from over 25
performance measures (new performance measures can be added
using a standard interface). Curves from different
cross-validation or bootstrapping runs can be averaged by
different methods, and standard deviations, standard errors or
box plots can be used to visualize the variability across the
runs. The parameterization can be visualized by printing cutoff
values at the corresponding curve positions, or by coloring the
curve according to cutoff. All components of a performance plot
can be quickly adjusted using a flexible parameter dispatching
mechanism. Despite its flexibility, ROCR is easy to use, with
only three commands and reasonable default values for all
optional parameters.
Author: Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
Maintainer: Tobias Sing
ROCR-1.0-4/ROCR/CITATION |only
ROCR-1.0-4/ROCR/LICENCE |only
ROCR-1.0-5/ROCR/DESCRIPTION | 15 ++++++++-------
ROCR-1.0-5/ROCR/MD5 |only
ROCR-1.0-5/ROCR/NAMESPACE |only
ROCR-1.0-5/ROCR/NEWS | 5 +++++
ROCR-1.0-5/ROCR/R/zzz.R | 18 +++++++++---------
ROCR-1.0-5/ROCR/README | 10 ++++++++++
ROCR-1.0-5/ROCR/data/ROCR.hiv.rda |binary
ROCR-1.0-5/ROCR/data/ROCR.simple.rda |binary
ROCR-1.0-5/ROCR/data/ROCR.xval.rda |binary
ROCR-1.0-5/ROCR/inst |only
12 files changed, 32 insertions(+), 16 deletions(-)
Title: Bayesian Estimation of Tumor Purity and Clonality
Diff between PurBayes versions 1.2 dated 2013-04-12 and 1.3 dated 2013-05-16
Description: PurBayes is an MCMC-based algorithm that uses
next-generation sequencing data to estimate tumor purity and
clonality for paired tumor-normal data.
Author: Nicholas B. Larson
Maintainer: Nicholas B. Larson
PurBayes-1.2/PurBayes/R/PurBayes.R |only
PurBayes-1.2/PurBayes/man/PB.plot.Rd |only
PurBayes-1.2/PurBayes/man/write.PB.Rd |only
PurBayes-1.3/PurBayes/DESCRIPTION | 8 ++++----
PurBayes-1.3/PurBayes/MD5 | 15 ++++++++-------
PurBayes-1.3/PurBayes/NAMESPACE | 12 ++++++------
PurBayes-1.3/PurBayes/R/PurBayes.r |only
PurBayes-1.3/PurBayes/man/PurBayes-package.Rd | 7 ++++---
PurBayes-1.3/PurBayes/man/PurBayes.Rd | 14 +++++++++-----
PurBayes-1.3/PurBayes/man/plot.PurBayes.Rd |only
PurBayes-1.3/PurBayes/man/print.summary.PurBayes.Rd |only
PurBayes-1.3/PurBayes/man/summary.PurBayes.Rd |only
12 files changed, 31 insertions(+), 25 deletions(-)
Title: Diagnostic and prognostic meta analysis (metamisc)
Diff between metamisc versions 0.0.4 dated 2013-01-21 and 0.1.0 dated 2013-05-16
Description: This package provides functions for diagnostic and
prognostic meta-analyses. It estimates univariate, bivariate
and multivariate models, and allows the aggregation of
previously published prediction models with new data.
Author: Thomas Debray
Maintainer: Thomas Debray
metamisc-0.0.4/metamisc/man/predict.uvmeta.Rd |only
metamisc-0.1.0/metamisc/DESCRIPTION | 17
metamisc-0.1.0/metamisc/MD5 | 36 -
metamisc-0.1.0/metamisc/NAMESPACE | 5
metamisc-0.1.0/metamisc/R/riley.r | 47 +-
metamisc-0.1.0/metamisc/R/uvmeta.r | 451 +++++++++++++-------
metamisc-0.1.0/metamisc/data/Collins.rda |only
metamisc-0.1.0/metamisc/data/Daniels.rda |binary
metamisc-0.1.0/metamisc/data/Kertai.rda |binary
metamisc-0.1.0/metamisc/data/Roberts.rda |binary
metamisc-0.1.0/metamisc/data/Scheidler.rda |binary
metamisc-0.1.0/metamisc/inst/model/uvmeta_fixef.bug | 3
metamisc-0.1.0/metamisc/inst/model/uvmeta_ranef.bug | 4
metamisc-0.1.0/metamisc/man/Collins.Rd |only
metamisc-0.1.0/metamisc/man/Daniels.Rd | 10
metamisc-0.1.0/metamisc/man/metamisc-package.Rd | 4
metamisc-0.1.0/metamisc/man/plot.riley.Rd | 6
metamisc-0.1.0/metamisc/man/rileyDA.Rd | 3
metamisc-0.1.0/metamisc/man/rileyES.Rd | 5
metamisc-0.1.0/metamisc/man/uvmeta-class.Rd |only
metamisc-0.1.0/metamisc/man/uvmeta.Rd | 45 +
21 files changed, 410 insertions(+), 226 deletions(-)
Title: Complex survey structural equation modeling (SEM)
Diff between lavaan.survey versions 0.7 dated 2013-02-07 and 0.8 dated 2013-05-16
Description: Fit structural equation models (SEM) including factor
analysis, multivariate regression models with latent variables
and many other latent variable models while correcting
estimates, standard errors, and chi-square-derived fit measures
for a complex sampling design. Incorporate clustering,
stratification, sampling weights, and finite population
corrections into a SEM analysis. Wrapper around packages
lavaan and survey.
Author: Daniel Oberski
Maintainer: Daniel Oberski
DESCRIPTION | 11 ++++++-----
MD5 | 7 ++++---
NAMESPACE | 1 +
R/lavaan.survey.R | 41 ++++++++++++++++++++++++++++++++++++++---
man/pval.pFsum.Rd |only
5 files changed, 49 insertions(+), 11 deletions(-)
Title: Model selection and multimodel inference based on (Q)AIC(c)
Diff between AICcmodavg versions 1.29 dated 2013-04-22 and 1.30 dated 2013-05-16
Description: This package includes functions to create model selection
tables based on Akaike's information criterion (AIC) and the
second-order AIC (AICc), as well as their quasi-likelihood
counterparts (QAIC, QAICc). Tables are printed with delta AIC
and Akaike weights. The package also features functions to
conduct classic model averaging (multimodel inference) for a
given parameter of interest and predicted values, as well as a
shrinkage version of model averaging parameter estimates.
Other handy functions enable the computation of relative
variable importance, evidence ratios, and confidence sets for
the best model. The present version works with Cox regression
('coxph' class), linear models ('lm' class), generalized linear
models ('glm' class), linear models fit by generalized least
squares ('gls' class), linear mixed models ('lme' class),
generalized linear mixed models ('mer' class), multinomial and
ordinal logistic regressions ('multinom', 'polr', 'clm', and
'clmm' classes), robust regression models ('rlm' class),
nonlinear models ('nls' class), and nonlinear mixed models
('nlme' class). The package also supports various models
incorporating detection probabilities such as single-season
occupancy models ('unmarkedFitOccu' and 'unmarkedFitOccuFP
classes), multiple-season occupancy models ('unmarkedFitColExt'
class), single-season heterogeneity models ('unmarkedFitOccuRN'
class), single-season and multiple-season N-mixture models for
repeated counts ('unmarkedFitPCount' and 'unmarkedFitPCO'
classes, respectively), and distance sampling models
('unmarkedFitDS' and 'unmarkedFitGDS' classes).
Author: Marc J. Mazerolle
Maintainer: Marc J. Mazerolle
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
inst/NEWS | 6 ++++++
man/AICcmodavg-package.Rd | 4 ++--
man/extract.LL.Rd | 23 ++++++++++++++++-------
man/mb.gof.test.Rd | 3 ++-
man/modavg.effect.Rd | 3 ++-
man/modavg.shrink.Rd | 2 ++
man/predictSE.zip.Rd | 3 +++
9 files changed, 45 insertions(+), 23 deletions(-)
Title: ADI (average dominance index) and social network graphs with
dual directions
Diff between Dominance versions 0.9.9 dated 2013-05-07 and 0.9.11 dated 2013-05-16
Description: The package can calculate ADI (Average Dominance Index)
and can build social network graphs with dual directions, can
build a Music Notation Graph
Author: Knut Krueger, with contributions from Konstanze Krueger
Maintainer: Knut Krueger
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
R/ADI.R | 13 +++++++------
man/ADI.Rd | 3 ++-
man/musicnotation.Rd | 8 +++++---
man/sociogram.Rd | 3 ++-
6 files changed, 26 insertions(+), 21 deletions(-)
Title: DDalpha-Classifier
Diff between ddalpha versions 1.0.3 dated 2013-02-28 and 1.0.4 dated 2013-05-16
Description: Contains DDalpha-classifier and associated functions
Author: Oleksii Pokotylo, Pavlo Mozharovskyi
Maintainer: Oleksii Pokotylo
DESCRIPTION | 8 ++---
MD5 | 42 ++++++++++++++---------------
R/ddalpha-internal.r | 23 +++++++++++++---
R/ddalpha.classify.r | 63 +++++++++++++++++++++++++++++++-------------
R/ddalpha.train.r | 15 ++++++++++
R/depth.randomTukey.r | 9 ++++++
R/depth.space.randomTukey.r | 9 ++++++
R/depth.space.zonoid.r | 13 +++++++--
R/depth.zonoid.r | 10 ++++++
R/is.in.convex.r | 9 ++++++
man/depth.randomTukey.Rd | 2 -
src/AlphaProcedure.cpp | 13 +++++++++
src/AlphaProcedure.h | 13 +++++++++
src/DataStructures.h | 9 ++++++
src/Knn.cpp | 9 ++++++
src/Knn.h | 9 ++++++
src/TukeyDepth.cpp | 13 +++++++++
src/TukeyDepth.h | 13 +++++++++
src/ZonoidDepth.cpp | 55 +++++++++++++++++++++++++++++++++++++-
src/ZonoidDepth.h | 8 ++++-
src/ddalpha.cpp | 20 +++++++++++--
src/stdafx.h | 9 ++++++
22 files changed, 316 insertions(+), 58 deletions(-)
Title: Spatial analysis of animal track data
Diff between trip versions 1.1-12 dated 2012-11-06 and 1.1-14 dated 2013-05-16
Description: Functions for accessing and manipulating spatial data for
animal tracking. Filter for speed and create time spent plots
from animal track data.
Author: Michael Sumner[aut, cre], Sebastian Luque [ctb]
Maintainer: Michael D. Sumner
trip-1.1-12/trip/R/TimeOrderedRecords.R |only
trip-1.1-12/trip/R/oc.colors.R |only
trip-1.1-12/trip/R/tripFunctions.R |only
trip-1.1-12/trip/man/TimeOrderedRecords.Rd |only
trip-1.1-12/trip/man/as.SpatialLinesDataFrame.Rd |only
trip-1.1-12/trip/man/as.ltraj.Rd |only
trip-1.1-12/trip/man/as.ppp.Rd |only
trip-1.1-12/trip/man/readDiag.Rd |only
trip-1.1-12/trip/man/trip.Rd |only
trip-1.1-12/trip/man/trip.split.exact.Rd |only
trip-1.1-12/trip/man/tripTransform.Rd |only
trip-1.1-12/trip/man/virtuals.Rd |only
trip-1.1-14/trip/ChangeLog |only
trip-1.1-14/trip/DESCRIPTION | 24
trip-1.1-14/trip/MD5 | 78 +-
trip-1.1-14/trip/NAMESPACE | 147 ----
trip-1.1-14/trip/NEWS | 16
trip-1.1-14/trip/R/AllClass.R |only
trip-1.1-14/trip/R/AllGenerics.R |only
trip-1.1-14/trip/R/AllMethod.R |only
trip-1.1-14/trip/R/filter.penSS.R | 93 +-
trip-1.1-14/trip/R/oc.theme.R | 66 +
trip-1.1-14/trip/R/readDiag.R | 43 -
trip-1.1-14/trip/R/speedfilter.R | 167 +---
trip-1.1-14/trip/R/trackDistance.R | 91 +-
trip-1.1-14/trip/R/trip.R | 785 ++++++++++-------------
trip-1.1-14/trip/R/trip.split.R | 130 ++-
trip-1.1-14/trip/R/trip2other.R | 127 ---
trip-1.1-14/trip/R/tripGrid.R | 195 +----
trip-1.1-14/trip/TODO | 60 +
trip-1.1-14/trip/man/TimeOrderedRecords-class.Rd | 107 ++-
trip-1.1-14/trip/man/adjust.duplicateTimes.Rd | 72 +-
trip-1.1-14/trip/man/argos.sigma.Rd | 54 +
trip-1.1-14/trip/man/as.Other.Rd |only
trip-1.1-14/trip/man/as.trip.Rd |only
trip-1.1-14/trip/man/cut.trip.Rd |only
trip-1.1-14/trip/man/filter.penSS.Rd | 131 ++-
trip-1.1-14/trip/man/forceCompliance.Rd | 45 -
trip-1.1-14/trip/man/makeGridTopology.Rd | 43 -
trip-1.1-14/trip/man/oc.theme.Rd | 49 +
trip-1.1-14/trip/man/readArgos.Rd | 155 +++-
trip-1.1-14/trip/man/sepIdGaps.Rd | 75 +-
trip-1.1-14/trip/man/speedfilter.Rd | 112 ++-
trip-1.1-14/trip/man/trackDistance.Rd | 40 -
trip-1.1-14/trip/man/trip-accessors.Rd |only
trip-1.1-14/trip/man/trip-class.Rd | 269 +++++--
trip-1.1-14/trip/man/trip-deprecated.Rd |only
trip-1.1-14/trip/man/trip-internal.Rd | 42 -
trip-1.1-14/trip/man/trip-methods.Rd |only
trip-1.1-14/trip/man/tripGrid.Rd | 58 +
trip-1.1-14/trip/man/tripGrid.interp.Rd | 110 ++-
51 files changed, 1846 insertions(+), 1538 deletions(-)
Title: Visualization of spatial and spatio-temporal objects in Google
Earth
Diff between plotKML versions 0.3-4 dated 2013-04-18 and 0.3-5 dated 2013-05-16
Description: Writes sp-class, spacetime-class, raster-class and similar
spatial and spatio-temporal objects to KML following some basic
cartographic rules. Suitable for visualization of complete
analysis outputs.
Author: Tomislav Hengl [cre, aut], Pierre Roudier [ctb], Dylan
Beaudette [ctb], Edzer Pebesma [ctb]
Maintainer: Tomislav Hengl
DESCRIPTION | 8 ++++----
MD5 | 22 +++++++++++-----------
R/layer.RasterBrick.R | 7 ++++++-
R/plotKML.sp.R | 16 ++++++++--------
man/gpxbtour.Rd | 9 ++++-----
man/layer.RasterBrick.Rd | 5 ++++-
man/layer.STTDF.Rd | 12 +++++++-----
man/layer.SoilProfileCollection.Rd | 20 +++++++++++---------
man/plotKML.Rd | 13 ++++++++-----
man/reproject.Rd | 19 +++++++++++--------
man/spMetadata.Rd | 22 ++++++++++++----------
man/vect2rast.Rd | 15 +++++++++------
12 files changed, 95 insertions(+), 73 deletions(-)
Title: Firth's bias reduced logistic regression
Diff between logistf versions 1.10 dated 2010-04-25 and 1.20 dated 2013-05-16
Description: Firth's bias reduced logistic regression approach with
penalized profile likelihood based confidence intervals for
parameter estimates.
Author: Georg Heinze
Maintainer: Georg Heinze
logistf-1.10/logistf/INDEX |only
logistf-1.10/logistf/R/logistf.fit.r |only
logistf-1.10/logistf/data/sex2.txt |only
logistf-1.10/logistf/data/sexagg.txt |only
logistf-1.10/logistf/man/logistfplot.Rd |only
logistf-1.10/logistf/man/logistpl.control.Rd |only
logistf-1.10/logistf/man/sexagg.Rd |only
logistf-1.20/logistf/DESCRIPTION | 21 -
logistf-1.20/logistf/MD5 |only
logistf-1.20/logistf/NAMESPACE | 24 +
logistf-1.20/logistf/R/CLIP.confint.r |only
logistf-1.20/logistf/R/CLIP.profile.r |only
logistf-1.20/logistf/R/PVR.confint.r |only
logistf-1.20/logistf/R/anova.logistf.r |only
logistf-1.20/logistf/R/cholLinpack.R |only
logistf-1.20/logistf/R/extractAIC.logistf.r |only
logistf-1.20/logistf/R/inverseLinpack.R |only
logistf-1.20/logistf/R/logistf.R | 350 ++------------------
logistf-1.20/logistf/R/logistf.control.R |only
logistf-1.20/logistf/R/logistf.fit.R |only
logistf-1.20/logistf/R/logistf.fit.old.R |only
logistf-1.20/logistf/R/logistf.pdf.R |only
logistf-1.20/logistf/R/logistftest.R |only
logistf-1.20/logistf/R/logistpl.R |only
logistf-1.20/logistf/R/logistpl.control.r |only
logistf-1.20/logistf/R/logistpl.old.R |only
logistf-1.20/logistf/R/plot.logistf.profile.r |only
logistf-1.20/logistf/R/pool.RR.r |only
logistf-1.20/logistf/R/print.logistf.R |only
logistf-1.20/logistf/R/print.logistftest.R |only
logistf-1.20/logistf/R/profile.logistf.r |only
logistf-1.20/logistf/R/summary.logistf.R |only
logistf-1.20/logistf/data/sex2.txt.gz |only
logistf-1.20/logistf/data/sexagg.txt.gz |only
logistf-1.20/logistf/man/CLIP.confint.Rd |only
logistf-1.20/logistf/man/CLIP.profile.Rd |only
logistf-1.20/logistf/man/PVR.confint.Rd |only
logistf-1.20/logistf/man/add1.logistf.Rd |only
logistf-1.20/logistf/man/anova.logistf.Rd |only
logistf-1.20/logistf/man/backward.Rd |only
logistf-1.20/logistf/man/is.logistf.Rd |only
logistf-1.20/logistf/man/logistf-package.Rd |only
logistf-1.20/logistf/man/logistf.Rd | 385 ++++++++++-------------
logistf-1.20/logistf/man/logistf.control.Rd | 19 -
logistf-1.20/logistf/man/logistftest.Rd | 49 +-
logistf-1.20/logistf/man/logistpl.control.rd |only
logistf-1.20/logistf/man/plot.logistf.profile.Rd |only
logistf-1.20/logistf/man/pool.RR.rd |only
logistf-1.20/logistf/man/print.logistf.Rd |only
logistf-1.20/logistf/man/print.logistftest.Rd |only
logistf-1.20/logistf/man/profile.logistf.Rd |only
logistf-1.20/logistf/man/sex2.Rd | 48 +-
logistf-1.20/logistf/man/summary.logistf.Rd |only
logistf-1.20/logistf/man/vcov.logistf.Rd |only
logistf-1.20/logistf/src |only
55 files changed, 319 insertions(+), 577 deletions(-)
Title: General Smoothing Splines
Diff between gss versions 2.0-13 dated 2013-03-09 and 2.0-14 dated 2013-05-16
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu
Maintainer: Chong Gu
ChangeLog | 6 ++++++
DESCRIPTION | 8 ++++----
MD5 | 33 +++++++++++++++++----------------
R/cdssden.R | 8 ++++----
R/mkran1.R |only
R/project.sscden.R | 19 ++++++++++++-------
R/project.sscden1.R | 46 ++++++++++++++++++++++++++++++----------------
R/project.ssden1.R | 3 ++-
R/project.sshzd1.R | 3 ++-
R/sscden.R | 28 ++++++++++++++++------------
R/sscden1.R | 26 ++++++++++++++------------
R/ssden.R | 16 ++++++++++------
R/ssden1.R | 16 ++++++++++------
man/drkpk.Rd | 6 ++++--
src/dnewton.f | 26 ++++++++++++++------------
src/ratfor/dnewton.r | 2 +-
src/ratfor/reg.r | 2 +-
src/reg.f | 26 ++++++++++++++------------
18 files changed, 161 insertions(+), 113 deletions(-)