Sun, 22 Apr 2018

Package disclapmix updated to version 1.7 with previous version 1.6.2 dated 2015-09-09

Title: Discrete Laplace Mixture Inference using the EM Algorithm
Description: Make inference in a mixture of discrete Laplace distributions using the EM algorithm. This can e.g. be used for modelling the distribution of Y chromosomal haplotypes as described in [1, 2] (refer to the URL section).
Author: Mikkel Meyer Andersen [aut, cre], Poul Svante Eriksen [aut]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>

Diff between disclapmix versions 1.6.2 dated 2015-09-09 and 1.7 dated 2018-04-22

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Package compareGroups updated to version 3.3.4 with previous version 3.3.3 dated 2018-01-29

Title: Descriptive Analysis by Groups
Description: Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Author: Isaac Subirana, Joan Vila, Hector Sanz, Gavin Lucas, Judith Penafiel and David Gimenez
Maintainer: Isaac Subirana <isubirana@imim.es>

Diff between compareGroups versions 3.3.3 dated 2018-01-29 and 3.3.4 dated 2018-04-22

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Package NITPicker updated to version 0.1.2 with previous version 0.1.1 dated 2018-04-20

Title: Finds the Best Subset of Points to Sample
Description: Given a few examples of experiments over a time (or spatial) course, 'NITPicker' selects a subset of points to sample in follow-up experiments, which would (i) best distinguish between the experimental conditions and the control condition (ii) best distinguish between two models of how the experimental condition might differ from the control (iii) a combination of the two. Ezer and Keir (2018) <doi:10.1101/301796>.
Author: Daphne Ezer
Maintainer: Daphne Ezer <dezer@turing.ac.uk>

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Package chorrrds updated to version 0.1.4 with previous version 0.1.3 dated 2018-04-19

Title: Music Chords Extraction
Description: Extracts music chords from the 'CifraClub' website <https://www.cifraclub.com.br/>. The package also has functions for cleaning the extracted data and feature extraction.
Author: Bruna Wundervald
Maintainer: Bruna Wundervald <brunadaviesw@gmail.com>

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Package RRPP updated to version 0.2.0 with previous version 0.1.0 dated 2018-01-22

Title: Linear Model Evaluation with Randomized Residuals in a Permutation Procedure
Description: Linear model calculations are made for many random versions of data. Using residual randomization in a permutation procedure, sums of squares are calculated over many permutations to generate empirical probability distributions for evaluating model effects. This method is described by Collyer, Sekora, & Adams (2015) <doi:10.1038/hdy.2014.75>.
Author: Michael Collyer, Dean Adams
Maintainer: Michael Collyer <mlcollyer@gmail.com>

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Package clustermq updated to version 0.8.4 with previous version 0.8.3 dated 2018-01-21

Title: Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM, PBS/Torque)
Description: Evaluate arbitrary function calls using workers on HPC schedulers in single line of code. All processing is done on the network without accessing the file system. Remote schedulers are supported via SSH.
Author: Michael Schubert <mschu.dev@gmail.com>
Maintainer: Michael Schubert <mschu.dev@gmail.com>

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Package Rnightlights updated to version 0.2.0 with previous version 0.1.5 dated 2018-01-07

Title: Satellite Nightlight Data Extraction
Description: Extracts raster and zonal statistics from satellite nightlight rasters downloaded from the United States National Oceanic and Atmospheric Administration (<http://www.noaa.gov>) free data repositories. Both the DMSP-OLS annual and SNPP-VIIRS monthly nightlight raster data are supported. Satellite nightlight raster tiles are downloaded and cropped to the country boundaries using shapefiles from the GADM database of Global Administrative Areas (<http://gadm.org>). Zonal statistics are then calculated at the lowest administrative boundary for the selected country and cached locally for future retrieval. Finally, a simple data explorer/browser is included that allows one to visualize the cached data e.g. graphing, mapping and clustering regional data.
Author: Christopher Njuguna [aut, cre, cph]
Maintainer: Christopher Njuguna <chris.njuguna@gmail.com>

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Package rcube updated to version 0.2 with previous version 0.1 dated 2018-04-12

Title: Simulations and Visualizations of Rubik's Cube (with Mods)
Description: Provides simplified methods for managing classic Rubik's cubes and many other modifications of it (such as NxNxN size cubes, void cubes and 8-coloured cubes - so called octa cubes). Includes functions of handling special syntax for managing such cubes; and different approach to plotting 3D cubes without using external libraries (for example 'OpenGL').
Author: Wojciech Rosa
Maintainer: Wojciech Rosa <w.rosa@pollub.pl>

Diff between rcube versions 0.1 dated 2018-04-12 and 0.2 dated 2018-04-22

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Package SSDforR updated to version 1.4.18 with previous version 1.4.17 dated 2017-10-06

Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre], Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>

Diff between SSDforR versions 1.4.17 dated 2017-10-06 and 1.4.18 dated 2018-04-22

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Package readability (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-01-22 0.1.1

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Package syllable (with last version 0.1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-02-19 0.1.3
2017-01-20 0.1.2

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Package regexr (with last version 1.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-08-16 1.1.0
2015-01-11 1.0.2
2014-12-22 0.0.2

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Package psgp updated to version 0.3-18 with previous version 0.3-17 dated 2018-04-13

Title: Projected Spatial Gaussian Process Methods
Description: Implements projected sparse Gaussian process Kriging (Ingram 'et. al.', 2008, <doi:10.1007/s00477-007-0163-9>) as an additional method for the 'intamap' package. More details on implementation (Barillec 'et. al.', 2010, <doi:10.1016/j.cageo.2010.05.008>).
Author: Ben Ingram <ingrambr@gmail.com>, Remi Barillec <remi@igiltd.com>, Jon Olav Skoien <jon.skoien@gmail.com>
Maintainer: Ben Ingram <ingrambr@gmail.com>

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Package ks updated to version 1.11.1 with previous version 1.11.0 dated 2018-01-16

Title: Kernel Smoothing
Description: Kernel smoothers for univariate and multivariate data, including densities, density derivatives, cumulative distributions, clustering, classification, density ridges, significant modal regions, and two-sample hypothesis tests. Duong (2017) <doi:10.18637/jss.v021.i07>.
Author: Tarn Duong <tarn.duong@gmail.com>
Maintainer: Tarn Duong <tarn.duong@gmail.com>

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Package GGIR updated to version 1.5-21 with previous version 1.5-18 dated 2018-03-18

Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in van Hees and colleagues (2014) <doi: 10.1152/japplphysiol.00421.2014> and (2015) <doi: 10.1371/journal.pone.0142533>. The package has been developed and tested for binary data from 'GENEActiv' <https://www.activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <http://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com/product/ax3>. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre], Zhou Fang [ctb], Jing Hua Zhao [ctb], Joe Heywood [ctb], Evgeny Mirkes [ctb], Severine Sabia [ctb], Jairo H Migueles [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>

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Package VetResearchLMM updated to version 1.0.0 with previous version 0.2.0 dated 2017-04-04

Title: Linear Mixed Models - An Introduction with Applications in Veterinary Research
Description: R Codes and Datasets for Duchateau, L. and Janssen, P. and Rowlands, G. J. (1998). Linear Mixed Models. An Introduction with applications in Veterinary Research. International Livestock Research Institute.
Author: Muhammad Yaseen [aut, cre], Luc Duchateau [ctb], Paul Janssen [ctb], John Rowlands [ctb]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>

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Sat, 21 Apr 2018

Package rsvg updated to version 1.2 with previous version 1.1 dated 2017-03-21

Title: Render SVG Images into PDF, PNG, PostScript, or Bitmap Arrays
Description: Renders vector-based svg images into high-quality custom-size bitmap arrays using 'librsvg2'. The resulting bitmap can be written to e.g. png, jpeg or webp format. In addition, the package can convert images directly to various formats such as pdf or postscript.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

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Package RSiteCatalyst updated to version 1.4.15 with previous version 1.4.14 dated 2018-02-16

Title: R Client for Adobe Analytics API V1.4
Description: Functions for interacting with the Adobe Analytics API V1.4 (<https://api.omniture.com/admin/1.4/rest/>).
Author: Willem Paling, Randy Zwitch & Jowanza Joseph
Maintainer: Randy Zwitch <rzwitch+rsitecatalyst@gmail.com>

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Package R.oo updated to version 1.22.0 with previous version 1.21.0 dated 2016-10-31

Title: R Object-Oriented Programming with or without References
Description: Methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers. The package has been developed since 2001 and is now considered very stable. This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

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Package ManlyMix updated to version 0.1.12 with previous version 0.1.11 dated 2017-11-18

Title: Manly Mixture Modeling and Model-Based Clustering
Description: The utility of this package includes finite mixture modeling and model-based clustering through Manly mixture models by Zhu and Melnykov (2016) <DOI:10.1016/j.csda.2016.01.015>. It also provides capabilities for forward and backward model selection procedures.
Author: Xuwen Zhu [aut, cre], Volodymyr Melnykov [aut], Michael Hutt [ctb, cph] (NM optimization in c), Stephen Moshier [ctb, cph] (eigen calculations in c), Rouben Rostamian [ctb, cph] (memory allocation in c)
Maintainer: Xuwen Zhu <xuwen.zhu@louisville.edu>

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Package s2 updated to version 0.4-0 with previous version 0.3-0 dated 2017-12-10

Title: Google's S2 Library for Geometry on the Sphere
Description: R bindings for Google's s2 library for geometric calculations on the sphere.
Author: Ege Rubak [aut, cre], Jeroen Ooms [aut] (configure and cleanup script), Edzer Pebesma [aut] (Interface to sf), Google, Inc. [cph] (Original s2 source code)
Maintainer: Ege Rubak <rubak@math.aau.dk>

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 inst/include/util/math/vector4-inl.h            |   10 
 man/S2Cap_Contains.Rd                           |    5 
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 src/Makevars.in                                 |    2 
 src/Makevars.win                                |    2 
 src/Rcpp_s2cell.cpp                             |    4 
 src/geometry/CMakeLists.txt                     |  242 +++++++++++++++---------
 src/geometry/s1angle.cc                         |    1 
 src/geometry/s2.cc                              |    6 
 src/geometry/s2cell.cc                          |    4 
 src/geometry/s2edgeindex.cc                     |    3 
 src/geometry/s2loop.cc                          |    3 
 src/geometry/s2polygon.cc                       |   34 +--
 src/geometry/s2polygonbuilder.cc                |    3 
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 src/geometry/util/math/mathutil.cc              |    2 
 tools/src_tweaks.R                              |  168 +++++++++-------
 54 files changed, 656 insertions(+), 364 deletions(-)

More information about s2 at CRAN
Permanent link

Package RcppCWB updated to version 0.2.1 with previous version 0.1.7 dated 2018-02-20

Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query engine to efficiently analyze large corpora (<http://cwb.sourceforge.net>). 'RcppCWB' is licensed under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/ Licenses/GPL-3>). The 'CWB' relies on 'pcre' (BSD license, see <https://www.pcre.org/ licence.txt>) and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en. html>). See the file LICENSE.note for further information. The package includes modified code of the 'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre], Bernard Desgraupes [aut], Sylvain Loiseau [aut], Oliver Christ [ctb], Bruno Maximilian Schulze [ctb], Stefan Evert [ctb], Arne Fitschen [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>

Diff between RcppCWB versions 0.1.7 dated 2018-02-20 and 0.2.1 dated 2018-04-21

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 RcppCWB-0.2.1/RcppCWB/DESCRIPTION                                         |   42 
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 RcppCWB-0.2.1/RcppCWB/NAMESPACE                                           |   35 
 RcppCWB-0.2.1/RcppCWB/NEWS.md                                             |   23 
 RcppCWB-0.2.1/RcppCWB/R/RcppCWB_package.R                                 |  235 +--
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 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/ascii-print.c                           |    1 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/corpmanag.c                             |   12 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/cqp.c                                   |   10 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/eval.c                                  |   18 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/hash.c                                  |   11 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/html-print.c                            |    1 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/latex-print.c                           |    1 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/llquery.c                               |   18 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/macro.c                                 |   24 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/options.c                               |   48 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/parse_actions.c                         |   28 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/ranges.c                                |    2 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/regex2dfa.c                             |   32 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/sgml-print.c                            |    1 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/table.h                                 |    2 
 RcppCWB-0.2.1/RcppCWB/src/cwb/cqp/tree.c                                  |  170 +-
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 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_attribute_size.R                |    4 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_cpos2id.R                       |    4 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_cpos2lbound.R                   |    4 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_cpos2rbound.R                   |    4 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_cpos2str.R                      |    4 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_cpos2struc.R                    |    2 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_id2cpos.R                       |    4 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_id2freq.R                       |    4 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_id2str.R                        |    4 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_lexicon_size.R                  |    4 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_regex2id.R                      |    4 
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 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_str2id.R                        |    4 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_struc2cpos.R                    |    2 
 RcppCWB-0.2.1/RcppCWB/tests/testthat/test_struc2str.R                     |    2 
 RcppCWB-0.2.1/RcppCWB/tools/setpaths.R                                    |   36 
 104 files changed, 917 insertions(+), 1223 deletions(-)

More information about RcppCWB at CRAN
Permanent link

Package orloca updated to version 4.5 with previous version 4.3 dated 2017-10-24

Title: Operations Research LOCational Analysis Models
Description: Objects and methods to handle and solve the min-sum location problem, also known as Fermat-Weber problem. The min-sum location problem search for a point such that the weighted sum of the distances to the demand points are minimized. See "The Fermat-Weber location problem revisited" by Brimberg, Mathematical Programming, 1, pg. 71-76, 1995. <DOI:10.1007/BF01592245>. General global optimization algorithms are used to solve the problem, along with the adhoc Weiszfeld method, see "Sur le point pour lequel la Somme des distances de n points donnes est minimum", by Weiszfeld, Tohoku Mathematical Journal, First Series, 43, pg. 355-386, 1937.
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>

Diff between orloca versions 4.3 dated 2017-10-24 and 4.5 dated 2018-04-21

 ChangeLog                          |    3 ++
 DESCRIPTION                        |   18 ++++++++-------
 MD5                                |   41 ++++++++++++++++++++--------------
 NAMESPACE                          |    5 ++++
 R/as.R                             |   44 +++++++++++++++++++++----------------
 R/loca.p.R                         |   40 +++++++++++++++------------------
 R/orloca-package.R                 |    4 +--
 R/persp.loca.p.R                   |    6 ++---
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 21 files changed, 117 insertions(+), 92 deletions(-)

More information about orloca at CRAN
Permanent link

New package mlrCPO with initial version 0.3.3
Package: mlrCPO
Title: Composable Preprocessing Operators and Pipelines for Machine Learning
Description: Toolset that enriches 'mlr' with a diverse set of preprocessing operators. Composable Preprocessing Operators ("CPO"s) are first-class R objects that can be applied to data.frames and 'mlr' "Task"s to modify data, can be attached to 'mlr' "Learner"s to add preprocessing to machine learning algorithms, and can be composed to form preprocessing pipelines.
Authors@R: c( person("Martin", "Binder", email = "ma.binder@campus.lmu.de", role = c("aut", "cre")), person("Bernd", "Bischl", email = "bernd_bischl@gmx.net", role = "ctb"), person("Michel", "Lang", email = "michellang@gmail.com", role = "ctb"), person("Lars", "Kotthoff", email = "larsko@cs.ubc.ca", role = "ctb"))
URL: https://github.com/mlr-org/mlrCPO
BugReports: https://github.com/mlr-org/mlrCPO/issues
License: BSD_2_clause + file LICENSE
Encoding: UTF-8
Depends: R (>= 3.0.2), ParamHelpers (>= 1.10), mlr (>= 2.12)
Imports: BBmisc (>= 1.11), stringi, checkmate (>= 1.8.3), methods, stats, utils, backports (>= 1.1.0)
Suggests: party, rpart, mlbench, knitr, rmarkdown, testthat, mRMRe, care, randomForestSRC, randomForest, ranger (>= 0.8.0), Rfast, FSelector, e1071, DiscriMiner, digest, lintr, Hmisc, fastICA
LazyData: yes
ByteCompile: yes
Version: 0.3.3
Collate: 'CPOHelp.R' 'fauxCPOConstructor.R' 'auxiliary.R' 'ParamSetSugar.R' 'callInterface.R' 'FormatCheck.R' 'callCPO.R' 'properties.R' 'parameters.R' 'listCPO.R' 'makeCPO.R' 'CPO_applyFun.R' 'CPO_asNumeric.R' 'operators.R' 'NULLCPO.R' 'CPO_meta.R' 'CPO_cbind.R' 'CPO_collapseFact.R' 'CPO_dropConstants.R' 'CPO_encode.R' 'CPO_filterFeatures.R' 'CPO_fixFactors.R' 'CPO_ica.R' 'CPO_impute.R' 'CPO_makeCols.R' 'CPO_missingIndicators.R' 'CPO_modelMatrix.R' 'CPO_pca.R' 'CPO_quantileBinNumerics.R' 'CPO_regrResiduals.R' 'CPO_responseFromSE.R' 'CPO_scale.R' 'CPO_scaleMaxAbs.R' 'CPO_scaleRange.R' 'CPO_select.R' 'CPO_smote.R' 'CPO_spatialSign.R' 'CPO_subsample.R' 'CPO_wrap.R' 'RetrafoState.R' 'attributes.R' 'auxhelp.R' 'composeProperties.R' 'doublecaret.R' 'inverter.R' 'learner.R' 'makeCPOHelp.R' 'print.R' 'zzz.R'
RoxygenNote: 6.0.1.9000
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-04-21 15:52:21 UTC; user
Author: Martin Binder [aut, cre], Bernd Bischl [ctb], Michel Lang [ctb], Lars Kotthoff [ctb]
Maintainer: Martin Binder <ma.binder@campus.lmu.de>
Repository: CRAN
Date/Publication: 2018-04-21 21:49:58 UTC

More information about mlrCPO at CRAN
Permanent link

Package leaflet.extras updated to version 1.0.0 with previous version 0.2 dated 2017-06-25

Title: Extra Functionality for 'leaflet' Package
Description: The 'leaflet' JavaScript library provides many plugins some of which are available in the core 'leaflet' package, but there are many more. It is not possible to support them all in the core 'leaflet' package. This package serves as an add-on to the 'leaflet' package by providing extra functionality via 'leaflet' plugins.
Author: Bhaskar Karambelkar [aut, cre], Barret Schloerke [aut], Bangyou Zheng [ctb] (Leaflet-search and Leaflet-GPS plugin integration), Robin Cura [ctb] (Fixes for Draw Options), Markus Voge [ctb] (Enhancements for Draw Options), Markus Dumke [ctb] (Bounce Marker addition), Mapbox [ctb, cph] (leaflet-omnivore, csv2geojson, and togeojson libraries), Henry Thasler [ctb, cph] (Leaflet.Geodesic library), Dennis Wilhelm [ctb, cph] (Leaflet.StyleEditor library), Kirollos Risk [ctb, cph] (fuse.js library), Tim Wisniewski [ctb, cph] (leaflet-choropleth library), Leaflet [ctb, cph] (leaflet-draw library), Alexander Milevski [ctb, cph] (leaflet-draw-drag library), John Firebaugh [ctb, cph] (leaflet-fullscreen library), Stefano Cudini [ctb, cph] (leaflet-gps library), Johannes Rudolph [ctb, cph] (leaflet-hash library), Per Liedman [ctb, cph] (leaflet-measure-path library), Pavel Shramov [ctb, cph] (leaflet-plugins library), Filip Zavadil [ctb, cph] (leaflet-pulse-icon library), Stefano Cudini [ctb, cph] (leaflet-search library), CliffCloud [ctb, cph] (leaflet-sleep library), Ursudio [ctb, cph] (leaflet-webgl-heatmap library), Maxime Hadjinlian [ctb, cph] (leaflet.BounceMarker library), Vladimir Agafonkin [ctb, cph] (leaflet.heat library), Iván Sánchez Ortega [ctb, cph] (leaflet.tilelayer.pouchdbcached library), Dale Harvey [ctb, cph] (pouchdb-browser library), Mike Bostock [ctb, cph] (topojson library)
Maintainer: Bhaskar Karambelkar <bhaskarvk@gmail.com>

Diff between leaflet.extras versions 0.2 dated 2017-06-25 and 1.0.0 dated 2018-04-21

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 leaflet.extras-1.0.0/leaflet.extras/R/fullscreen.R                          |   20 
 leaflet.extras-1.0.0/leaflet.extras/R/geodesic.R                            |   36 
 leaflet.extras-1.0.0/leaflet.extras/R/gps.R                                 |   23 
 leaflet.extras-1.0.0/leaflet.extras/R/hash.R                                |   14 
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 leaflet.extras-1.0.0/leaflet.extras/R/mapUtils.R                            |   59 +
 leaflet.extras-1.0.0/leaflet.extras/R/measure-path.R                        |   63 +
 leaflet.extras-1.0.0/leaflet.extras/R/omnivore.R                            |  334 ++++++--
 leaflet.extras-1.0.0/leaflet.extras/R/pulseIcon.R                           |   41 -
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 leaflet.extras-1.0.0/leaflet.extras/R/sleep.R                               |   17 
 leaflet.extras-1.0.0/leaflet.extras/R/styleEditor.R                         |   26 
 leaflet.extras-1.0.0/leaflet.extras/R/weatherMarkers.R                      |   87 +-
 leaflet.extras-1.0.0/leaflet.extras/R/webGLHeatmap.R                        |  148 ++-
 leaflet.extras-1.0.0/leaflet.extras/R/wms-legend.R                          |   49 -
 leaflet.extras-1.0.0/leaflet.extras/inst/examples/CSV.R                     |   16 
 leaflet.extras-1.0.0/leaflet.extras/inst/examples/GPX.R                     |   26 
 leaflet.extras-1.0.0/leaflet.extras/inst/examples/KML.R                     |   40 -
 leaflet.extras-1.0.0/leaflet.extras/inst/examples/TileLayer-Caching.R       |   32 
 leaflet.extras-1.0.0/leaflet.extras/inst/examples/TopoJSON.R                |   59 -
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 leaflet.extras-1.0.0/leaflet.extras/inst/examples/geodesic.R                |   37 
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Package Gmisc updated to version 1.6.1 with previous version 1.5 dated 2017-10-19

Title: Descriptive Statistics, Transition Plots, and More
Description: Tools for making the descriptive "Table 1" used in medical articles, a transition plot for showing changes between categories, flow charts by extending the grid package, a method for variable selection based on the SVD, Bézier lines with arrows complementing the ones in the 'grid' package, and more.
Author: Max Gordon <max@gforge.se>
Maintainer: Max Gordon <max@gforge.se>

Diff between Gmisc versions 1.5 dated 2017-10-19 and 1.6.1 dated 2018-04-21

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Package FHDI updated to version 1.2.4 with previous version 1.2.3 dated 2018-04-19

Title: Fractional Hot Deck and Fully Efficient Fractional Imputation
Description: Impute general multivariate missing data with the fractional hot deck imputation based on Jaekwang Kim (2011) <doi:10.1093/biomet/asq073>.
Author: Jongho Im [aut], Inho Cho [aut, cre], Jaekwang Kim [aut]
Maintainer: Inho Cho <icho@iastate.edu>

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Package diffusr updated to version 0.1.3 with previous version 0.1.2 dated 2017-10-29

Title: Network Diffusion Algorithms
Description: Implementation of network diffusion algorithms such as heat diffusion or Markov random walks. Network diffusion algorithms generally spread information in the form of node weights along the edges of a graph to other nodes. These weights can for example be interpreted as temperature, an initial amount of water, the activation of neurons in the brain, or the location of a random surfer in the internet. The information (node weights) is iteratively propagated to other nodes until a equilibrium state or stop criterion occurs.
Author: Simon Dirmeier [aut, cre]
Maintainer: Simon Dirmeier <simon.dirmeier@gmx.de>

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Package amt updated to version 0.0.4.0 with previous version 0.0.3.0 dated 2018-03-22

Title: Animal Movement Tools
Description: Manage and analyze animal movement data. The functionality of 'amt' includes methods to calculate track statistics (e.g. step lengths, speed, or turning angles), prepare data for fitting habitat selection analyses (resource and step-selection functions), and simulation of space-use from fitted step-selection functions.
Author: Johannes Signer [aut, cre]
Maintainer: Johannes Signer <jsigner@gwdg.de>

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Package kerndwd updated to version 2.0.2 with previous version 2.0.1 dated 2017-07-18

Title: Distance Weighted Discrimination (DWD) and Kernel Methods
Description: A novel implementation that solves the linear distance weighted discrimination and the kernel distance weighted discrimination.
Author: Boxiang Wang <boxiang@umn.edu>, Hui Zou <hzou@stat.umn.edu>
Maintainer: Boxiang Wang <boxiang@umn.edu>

Diff between kerndwd versions 2.0.1 dated 2017-07-18 and 2.0.2 dated 2018-04-21

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Package Greg updated to version 1.2.2 with previous version 1.2.1 dated 2018-03-20

Title: Regression Helper Functions
Description: Methods for manipulating regression models and for describing these in a style adapted for medical journals. Contains functions for generating an HTML table with crude and adjusted estimates, plotting hazard ratio, plotting model estimates and confidence intervals using forest plots, extending this to comparing multiple models in a single forest plots. In addition to the descriptive methods, there are add-ons for the robust covariance matrix provided by the 'sandwich' package, a function for adding non-linearities to a model, and a wrapper around the 'Epi' package's Lexis() functions for time-splitting a dataset when modeling non-proportional hazards in Cox regressions.
Author: Max Gordon [aut, cre], Reinhard Seifert [aut] (Author of original plotHR)
Maintainer: Max Gordon <max@gforge.se>

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Package smovie updated to version 1.0.1 with previous version 1.0.0 dated 2018-03-05

Title: Some Movies to Illustrate Concepts in Statistics
Description: Provides movies to help students to understand statistical concepts. The 'rpanel' package <https://cran.r-project.org/package=rpanel> is used to create interactive plots that move to illustrate key statistical ideas and methods. There are movies to: visualise probability distributions (including user-supplied ones); illustrate sampling distributions of the sample mean (central limit theorem), the sample maximum (extremal types theorem) and (the Fisher transformation of the) Pearson product moment correlation coefficient; examine the influence of an individual observation in simple linear regression; illustrate key concepts in statistical hypothesis testing. Also provided are dpqr functions for the distribution of the Fisher transformation of the correlation coefficient under sampling from a bivariate normal distribution.
Author: Paul J. Northrop [aut, cre, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>

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Package TSEtools updated to version 0.1.1 with previous version 0.1.0 dated 2018-01-08

Title: Download and Manage Data from Tehran Stock Exchange
Description: Tools for downloading and organizing data from Tehran Stock Exchange (TSE) <http://new.tse.ir/en/>. It also performs some descriptive data analysis for assets.
Author: Ali Saeb
Maintainer: Ali Saeb <ali.saeb@gmail.com>

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Package clickR updated to version 0.3.64 with previous version 0.3.38 dated 2017-10-29

Title: Fix Data and Create Report Tables from Different Objects
Description: Tools for assessing data quality, performing exploratory analysis, fixing data errors in numerical, factor and date variables and creating report tables from models and summaries.
Author: Victoria Fornes Ferrer, David Hervas Marin
Maintainer: David Hervas Marin <ddhervas@yahoo.es>

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Package autoplotly updated to version 0.1.2 with previous version 0.1.1 dated 2018-02-11

Title: Automatic Generation of Interactive Visualizations for Statistical Results
Description: Functionalities to automatically generate interactive visualizations for statistical results supported by 'ggfortify', such as time series, PCA, clustering and survival analysis, with 'plotly.js' <https://plot.ly/> and 'ggplot2' style. The generated visualizations can also be easily extended using 'ggplot2' and 'plotly' syntax while staying interactive.
Author: Yuan Tang [aut, cre] (<https://orcid.org/0000-0001-5243-233X>)
Maintainer: Yuan Tang <terrytangyuan@gmail.com>

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More information about autoplotly at CRAN
Permanent link

Package fgui updated to version 1.0-8 with previous version 1.0-5 dated 2012-12-27

Title: Function GUI
Description: Rapidly create a GUI interface for a function you created by automatically creating widgets for arguments of the function. Automatically parses help routines for context-sensitive help to these arguments. The interface essentially a wrapper to some Tcl/Tk routines to both simplify and facilitate GUI creation. More advanced Tcl/Tk routines/GUI objects can be incorporated into the interface for greater customization for the more experienced.
Author: Thomas Hoffmann <tjhoffm@gmail.com>
Maintainer: Thomas Hoffmann <tjhoffm@gmail.com>

Diff between fgui versions 1.0-5 dated 2012-12-27 and 1.0-8 dated 2018-04-21

 DESCRIPTION    |   21 --
 MD5            |   12 -
 NAMESPACE      |    3 
 R/fguiWindow.R |    2 
 R/parseHelp.R  |  464 ++++++++++++++++++++++++++++++---------------------------
 R/widgets.R    |    9 -
 man/gui.Rd     |   78 +++++----
 7 files changed, 313 insertions(+), 276 deletions(-)

More information about fgui at CRAN
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Package expoRkit updated to version 0.9.1 with previous version 0.9 dated 2012-10-08

Title: Expokit in R
Description: An R-interface to the Fortran package Expokit.
Author: Roger B. Sidje [aut, cph], Niels Richard Hansen [aut, cre, cph]
Maintainer: Niels Richard Hansen <Niels.R.Hansen@math.ku.dk>

Diff between expoRkit versions 0.9 dated 2012-10-08 and 0.9.1 dated 2018-04-21

 DESCRIPTION   |   12 +++---
 MD5           |    7 ++-
 NAMESPACE     |    1 
 src/expokit.f |  112 +++++++++++++++++++++++++++++-----------------------------
 src/init.c    |only
 5 files changed, 68 insertions(+), 64 deletions(-)

More information about expoRkit at CRAN
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Package bigleaf updated to version 0.6.1 with previous version 0.5.2 dated 2018-04-10

Title: Physical and Physiological Ecosystem Properties from Eddy Covariance Data
Description: Calculation of physical (e.g. aerodynamic conductance, surface temperature), and physiological (e.g. canopy conductance, water-use efficiency) ecosystem properties from eddy covariance data and accompanying meteorological measurements. Calculations assume the land surface to behave like a 'big-leaf' and return bulk ecosystem/canopy variables.
Author: Juergen Knauer [aut, cre], Soenke Zaehle [ctb], Tarek El-Madany [ctb], Mirco Migliavacca [ctb]
Maintainer: Juergen Knauer <jknauer@bgc-jena.mpg.de>

Diff between bigleaf versions 0.5.2 dated 2018-04-10 and 0.6.1 dated 2018-04-21

 DESCRIPTION                    |    8 -
 MD5                            |   36 ++++----
 NEWS                           |   15 +++
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 R/check_input.r                |    8 +
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 man/stomatal.slope.Rd          |    2 
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 19 files changed, 267 insertions(+), 233 deletions(-)

More information about bigleaf at CRAN
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Package ASIP (with last version 0.3.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-09-15 0.3.2
2017-07-20 0.3
2017-07-20 0.3.1

Permanent link
Package openCR updated to version 1.1.2 with previous version 1.1.1 dated 2018-04-12

Title: Open Population Capture-Recapture
Description: Functions for the analysis of capture-recapture data from animal populations subject to turnover. The models extend Schwarz and Arnason (1996) <DOI:10.2307/2533048> and Borchers and Efford (2008) <DOI:10.1111/j.1541-0420.2007.00927.x>, and may be non-spatial or spatial. The parameterisation of recruitment is flexible (options include population growth rate and per capita recruitment). Spatially explicit analyses may assume home-range centres are fixed or allow dispersal between sampling sessions.
Author: Murray Efford [aut, cre] (<https://orcid.org/0000-0001-5231-5184>)
Maintainer: Murray Efford <murray.efford@otago.ac.nz>

Diff between openCR versions 1.1.1 dated 2018-04-12 and 1.1.2 dated 2018-04-21

 DESCRIPTION                   |    8 +--
 MD5                           |   35 ++++++-------
 NAMESPACE                     |    6 +-
 NEWS                          |   11 ++++
 R/bd.array.R                  |    6 +-
 R/simulate.R                  |    2 
 inst/doc/openCR-manual.pdf    |binary
 inst/doc/openCR-vignette.Rmd  |    9 ---
 inst/doc/openCR-vignette.pdf  |binary
 man/dipper.Rd                 |    7 +-
 man/fieldvoleCH.Rd            |    2 
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 man/openCR-package.Rd         |    4 -
 man/openCR.fit.Rd             |   21 ++++---
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 src/PCH1.cpp                  |   54 --------------------
 src/prwisecr.cpp              |    2 
 src/utils.cpp                 |  111 +++++++++++++++++++++---------------------
 vignettes/openCR-vignette.Rmd |    9 ---
 19 files changed, 133 insertions(+), 168 deletions(-)

More information about openCR at CRAN
Permanent link

Package httpuv updated to version 1.4.1 with previous version 1.4.0 dated 2018-04-19

Title: HTTP and WebSocket Server Library
Description: Provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone. httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)
Author: Joe Cheng, Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Winston Chang [ctb]
Maintainer: Joe Cheng <joe@rstudio.com>

Diff between httpuv versions 1.4.0 dated 2018-04-19 and 1.4.1 dated 2018-04-21

 DESCRIPTION  |    6 +++---
 MD5          |    8 ++++----
 NEWS.md      |    9 ++++++++-
 R/httpuv.R   |    3 +++
 src/Makevars |   13 ++++++++++---
 5 files changed, 28 insertions(+), 11 deletions(-)

More information about httpuv at CRAN
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Package aftgee updated to version 1.1-0 with previous version 1.0-0 dated 2014-11-13

Title: Accelerated Failure Time Model with Generalized Estimating Equations
Description: A collection of methods for both the rank-based estimates and least square estimates to the Accelerated Failure Time (AFT) model. For rank-based estimation, it provides approaches that include the computationally efficient Gehan's weight and the general's weight such as the logrank weight. Details of the rank-based estimation can be found in Chiou et al. (2014) <doi:10.1007/s11222-013-9388-2> and Chiou et al. (2015) <doi:10.1002/sim.6415>. For the least-square estimation, the estimating equation is solved with Generalized Estimating Equations (GEE). Moreover, in multivariate cases, the dependence working correlation structure can be specified in GEE's setting. Details on the least-squares estimation can be found in Chiou et al. (2014) <doi:10.1007/s10985-014-9292-x>.
Author: Sy Han (Steven) Chiou, Sangwook Kang, Jun Yan
Maintainer: Sy Han (Steven) Chiou <schiou@utdallas.edu>

Diff between aftgee versions 1.0-0 dated 2014-11-13 and 1.1-0 dated 2018-04-21

 ChangeLog                   |    3 
 DESCRIPTION                 |   25 
 MD5                         |   19 
 NAMESPACE                   |   12 
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 R/aftsrr.R                  | 1951 +++++++++++++++++++++++++++++++++++---------
 R/summary.R                 |   52 -
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 src/registerDynamicSymbol.c |only
 11 files changed, 2057 insertions(+), 937 deletions(-)

More information about aftgee at CRAN
Permanent link

Fri, 20 Apr 2018

Package leaflet updated to version 2.0.0 with previous version 1.1.0 dated 2017-02-21

Title: Create Interactive Web Maps with the JavaScript 'Leaflet' Library
Description: Create and customize interactive maps using the 'Leaflet' JavaScript library and the 'htmlwidgets' package. These maps can be used directly from the R console, from 'RStudio', in Shiny applications and R Markdown documents.
Author: Joe Cheng [aut, cre], Bhaskar Karambelkar [aut], Yihui Xie [aut], Hadley Wickham [ctb], Kenton Russell [ctb], Kent Johnson [ctb], Barret Schloerke [ctb], jQuery Foundation and contributors [ctb, cph] (jQuery library), Vladimir Agafonkin [ctb, cph] (Leaflet library), CloudMade [cph] (Leaflet library), Leaflet contributors [ctb] (Leaflet library), Leaflet Providers contributors [ctb, cph] (Leaflet Providers plugin), Brandon Copeland [ctb, cph] (leaflet-measure plugin), Joerg Dietrich [ctb, cph] (Leaflet.Terminator plugin), Benjamin Becquet [ctb, cph] (Leaflet.MagnifyingGlass plugin), Norkart AS [ctb, cph] (Leaflet.MiniMap plugin), L. Voogdt [ctb, cph] (Leaflet.awesome-markers plugin), Daniel Montague [ctb, cph] (Leaflet.EasyButton plugin), Kartena AB [ctb, cph] (Proj4Leaflet plugin), Robert Kajic [ctb, cph] (leaflet-locationfilter plugin), Mapbox [ctb, cph] (leaflet-omnivore plugin), Michael Bostock [ctb, cph] (topojson), RStudio [cph]
Maintainer: Joe Cheng <joe@rstudio.com>

Diff between leaflet versions 1.1.0 dated 2017-02-21 and 2.0.0 dated 2018-04-20

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 leaflet-2.0.0/leaflet/DESCRIPTION                                                                              |   17 
 leaflet-2.0.0/leaflet/LICENSE.note                                                                             |  101 
 leaflet-2.0.0/leaflet/MD5                                                                                      |  292 +-
 leaflet-2.0.0/leaflet/NAMESPACE                                                                                |    6 
 leaflet-2.0.0/leaflet/NEWS                                                                                     |   74 
 leaflet-2.0.0/leaflet/R/colors.R                                                                               |  128 -
 leaflet-2.0.0/leaflet/R/controls.R                                                                             |   21 
 leaflet-2.0.0/leaflet/R/data.R                                                                                 |   13 
 leaflet-2.0.0/leaflet/R/dependencies.R                                                                         |   53 
 leaflet-2.0.0/leaflet/R/layers.R                                                                               |  530 ++--
 leaflet-2.0.0/leaflet/R/leaflet.R                                                                              |   69 
 leaflet-2.0.0/leaflet/R/legacy.R                                                                               |   48 
 leaflet-2.0.0/leaflet/R/legend.R                                                                               |  125 -
 leaflet-2.0.0/leaflet/R/methods.R                                                                              |   74 
 leaflet-2.0.0/leaflet/R/normalize-SharedData.R                                                                 |    4 
 leaflet-2.0.0/leaflet/R/normalize-sf.R                                                                         |   23 
 leaflet-2.0.0/leaflet/R/normalize-sp.R                                                                         |    2 
 leaflet-2.0.0/leaflet/R/normalize.R                                                                            |   34 
 leaflet-2.0.0/leaflet/R/plugin-awesomeMarkers.R                                                                |   74 
 leaflet-2.0.0/leaflet/R/plugin-easybutton.R                                                                    |   78 
 leaflet-2.0.0/leaflet/R/plugin-graticule.R                                                                     |   13 
 leaflet-2.0.0/leaflet/R/plugin-measure.R                                                                       |   92 
 leaflet-2.0.0/leaflet/R/plugin-minimap.R                                                                       |   31 
 leaflet-2.0.0/leaflet/R/plugin-omnivore.R                                                                      |    8 
 leaflet-2.0.0/leaflet/R/plugin-providers.R                                                                     |   26 
 leaflet-2.0.0/leaflet/R/plugin-simplegraticule.R                                                               |   12 
 leaflet-2.0.0/leaflet/R/plugin-terminator.R                                                                    |    9 
 leaflet-2.0.0/leaflet/R/scalebar.R                                                                             |   20 
 leaflet-2.0.0/leaflet/R/selection.R                                                                            |    2 
 leaflet-2.0.0/leaflet/R/shiny.R                                                                                |    7 
 leaflet-2.0.0/leaflet/R/utils.R                                                                                |   77 
 leaflet-2.0.0/leaflet/README.md                                                                                |    2 
 leaflet-2.0.0/leaflet/data/gadmCHE.rda                                                                         |binary
 leaflet-2.0.0/leaflet/data/providers.details.rda                                                               |binary
 leaflet-2.0.0/leaflet/data/providers.rda                                                                       |binary
 leaflet-2.0.0/leaflet/inst/htmlwidgets/leaflet.js                                                              |  377 ++-
 leaflet-2.0.0/leaflet/inst/htmlwidgets/leaflet.yaml                                                            |   13 
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 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/index.js                                           |    7 
 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/leaflet-omnivore.min.js                            |    2 
 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/package.json                                       |    9 
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 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/providers.json                                    | 1190 +++++-----
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 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet/images/marker-shadow.png                                    |binary
 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet/leaflet.css                                                 |  245 +-
 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leaflet/leaflet.js                                                  |   14 
 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/leafletfix/leafletfix.css                                           |   34 
 leaflet-2.0.0/leaflet/inst/htmlwidgets/lib/rstudio_leaflet                                                     |only
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 leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/leaflet-locationfilter/locationfilter.css                       |   41 
 leaflet-2.0.0/leaflet/inst/htmlwidgets/plugins/leaflet-locationfilter/locationfilter.js                        |    2 
 leaflet-2.0.0/leaflet/inst/legacy/examples/choropleth/global.R                                                 |   10 
 leaflet-2.0.0/leaflet/inst/legacy/examples/choropleth/server.R                                                 |   22 
 leaflet-2.0.0/leaflet/inst/legacy/examples/choropleth/ui.R                                                     |   32 
 leaflet-2.0.0/leaflet/inst/legacy/examples/geojson/server.R                                                    |   22 
 leaflet-2.0.0/leaflet/inst/legacy/examples/population/server.R                                                 |   82 
 leaflet-2.0.0/leaflet/inst/legacy/examples/population/ui.R                                                     |   33 
 leaflet-2.0.0/leaflet/man/addAwesomeMarkers.Rd                                                                 |    1 
 leaflet-2.0.0/leaflet/man/addGraticule.Rd                                                                      |    6 
 leaflet-2.0.0/leaflet/man/addLayersControl.Rd                                                                  |   14 
 leaflet-2.0.0/leaflet/man/addLegend.Rd                                                                         |   58 
 leaflet-2.0.0/leaflet/man/addMeasure.Rd                                                                        |   21 
 leaflet-2.0.0/leaflet/man/addMiniMap.Rd                                                                        |   10 
 leaflet-2.0.0/leaflet/man/addProviderTiles.Rd                                                                  |    8 
 leaflet-2.0.0/leaflet/man/addRasterImage.Rd                                                                    |   31 
 leaflet-2.0.0/leaflet/man/addScaleBar.Rd                                                                       |    9 
 leaflet-2.0.0/leaflet/man/addSimpleGraticule.Rd                                                                |    7 
 leaflet-2.0.0/leaflet/man/addTerminator.Rd                                                                     |    4 
 leaflet-2.0.0/leaflet/man/atlStorms2005.Rd                                                                     |    1 
 leaflet-2.0.0/leaflet/man/awesomeIconList.Rd                                                                   |    9 
 leaflet-2.0.0/leaflet/man/awesomeIcons.Rd                                                                      |   17 
 leaflet-2.0.0/leaflet/man/breweries91.Rd                                                                       |    1 
 leaflet-2.0.0/leaflet/man/colorNumeric.Rd                                                                      |   48 
 leaflet-2.0.0/leaflet/man/deprecated.Rd                                                                        |    1 
 leaflet-2.0.0/leaflet/man/derivePoints.Rd                                                                      |    1 
 leaflet-2.0.0/leaflet/man/derivePolygons.Rd                                                                    |    1 
 leaflet-2.0.0/leaflet/man/dispatch.Rd                                                                          |    1 
 leaflet-2.0.0/leaflet/man/easyButton.Rd                                                                        |   22 
 leaflet-2.0.0/leaflet/man/evalFormula.Rd                                                                       |    1 
 leaflet-2.0.0/leaflet/man/expandLimits.Rd                                                                      |    1 
 leaflet-2.0.0/leaflet/man/expandLimitsBbox.Rd                                                                  |    1 
 leaflet-2.0.0/leaflet/man/filterNULL.Rd                                                                        |    1 
 leaflet-2.0.0/leaflet/man/gadmCHE.Rd                                                                           |    1 
 leaflet-2.0.0/leaflet/man/getMapData.Rd                                                                        |    1 
 leaflet-2.0.0/leaflet/man/groupOptions.Rd                                                                      |only
 leaflet-2.0.0/leaflet/man/iconList.Rd                                                                          |    9 
 leaflet-2.0.0/leaflet/man/icons.Rd                                                                             |   42 
 leaflet-2.0.0/leaflet/man/leaflet.Rd                                                                           |   77 
 leaflet-2.0.0/leaflet/man/leafletDependencies.Rd                                                               |    1 
 leaflet-2.0.0/leaflet/man/leafletProxy.Rd                                                                      |   18 
 leaflet-2.0.0/leaflet/man/makeAwesomeIcon.Rd                                                                   |   17 
 leaflet-2.0.0/leaflet/man/makeIcon.Rd                                                                          |    5 
 leaflet-2.0.0/leaflet/man/map-layers.Rd                                                                        |   36 
 leaflet-2.0.0/leaflet/man/map-methods.Rd                                                                       |   26 
 leaflet-2.0.0/leaflet/man/map-options.Rd                                                                       |   69 
 leaflet-2.0.0/leaflet/man/map-shiny.Rd                                                                         |    6 
 leaflet-2.0.0/leaflet/man/mapOptions.Rd                                                                        |    3 
 leaflet-2.0.0/leaflet/man/previewColors.Rd                                                                     |    1 
 leaflet-2.0.0/leaflet/man/providers.Rd                                                                         |    1 
 leaflet-2.0.0/leaflet/man/providers.details.Rd                                                                 |    1 
 leaflet-2.0.0/leaflet/man/remove.Rd                                                                            |   30 
 leaflet-2.0.0/leaflet/man/safeLabel.Rd                                                                         |    3 
 leaflet-2.0.0/leaflet/man/showGroup.Rd                                                                         |    3 
 leaflet-2.0.0/leaflet/man/validateCoords.Rd                                                                    |    8 
 leaflet-2.0.0/leaflet/tests/test-all.R                                                                         |    2 
 leaflet-2.0.0/leaflet/tests/testit/test-colors.R                                                               |   12 
 leaflet-2.0.0/leaflet/tests/testit/test-icon.R                                                                 |    2 
 leaflet-2.0.0/leaflet/tests/testit/test-legend.R                                                               |   72 
 leaflet-2.0.0/leaflet/tests/testit/test-remote.R                                                               |   48 
 leaflet-2.0.0/leaflet/tests/testit/test-utils.R                                                                |    8 
 leaflet-2.0.0/leaflet/tests/testthat/test-colors.R                                                             |    8 
 leaflet-2.0.0/leaflet/tests/testthat/test-normalize-2.R                                                        |  209 -
 leaflet-2.0.0/leaflet/tests/testthat/test-normalize.R                                                          |   21 
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Package healthcareai updated to version 2.0.0 with previous version 1.2.4 dated 2018-02-14

Title: Tools for Healthcare Machine Learning
Description: A machine learning toolbox tailored to healthcare data.
Author: Levi Thatcher [aut], Michael Levy [aut, cre], Mike Mastanduno [aut], Taylor Larsen [aut], Taylor Miller [aut]
Maintainer: Michael Levy <michael.levy@healthcatalyst.com>

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Package SimInf updated to version 6.0.0 with previous version 5.1.0 dated 2017-10-18

Title: A Framework for Data-Driven Stochastic Disease Spread Simulations
Description: Provides an efficient and very flexible framework to conduct data-driven epidemiological modeling in realistic large scale disease spread simulations. The framework integrates infection dynamics in subpopulations as continuous-time Markov chains using the Gillespie stochastic simulation algorithm and incorporates available data such as births, deaths and movements as scheduled events at predefined time-points. Using C code for the numerical solvers and 'OpenMP' (if available) to divide work over multiple processors ensures high performance when simulating a sample outcome. One of our design goal was to make the package extendable and enable usage of the numerical solvers from other R extension packages in order to facilitate complex epidemiological research. The package contains template models and can be extended with user-defined models.
Author: Stefan Widgren [aut, cre] (<https://orcid.org/0000-0001-5745-2284>), Robin Eriksson [aut] (<https://orcid.org/0000-0002-4291-712X>), Stefan Engblom [aut] (<https://orcid.org/0000-0002-3614-1732>), Pavol Bauer [aut] (<https://orcid.org/0000-0003-4328-7171>), Attractive Chaos [cph] (Author of 'kvec.h', a generic dynamic array)
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>

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Package semsfa updated to version 1.1 with previous version 1.0 dated 2015-02-18

Title: Semiparametric Estimation of Stochastic Frontier Models
Description: Semiparametric Estimation of Stochastic Frontier Models following a two step procedure: in the first step semiparametric or nonparametric regression techniques are used to relax parametric restrictions of the functional form representing technology and in the second step variance parameters are obtained by pseudolikelihood estimators or by method of moments.
Author: Giancarlo Ferrara and Francesco Vidoli
Maintainer: Giancarlo Ferrara <giancarlo.ferrara@gmail.com>

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Package futile.options updated to version 1.0.1 with previous version 1.0.0 dated 2010-04-06

Title: Futile Options Management
Description: A scoped options management framework. Used in other packages.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>

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Package SUMMER updated to version 0.2.0 with previous version 0.1.0 dated 2017-11-30

Title: Spatio-Temporal Under-Five Mortality Methods for Estimation
Description: Provides methods for estimating, projecting, and plotting spatio-temporal under-five mortality rates, described in Mercer et al. (2015) <doi:10.1214/15-AOAS872>.
Author: Bryan D Martin [cre, aut], Zehang R Li [aut], Yuan Hsiao [aut], Jessica Godwin [aut], Jon Wakefield [aut], Samuel J Clark [aut]
Maintainer: Bryan D Martin <bmartin6@uw.edu>

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Package Surrogate updated to version 0.7 with previous version 0.6 dated 2018-01-20

Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a (bio)marker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's Seventh Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Paul Meyvisch, Ariel Alonso, Hannah M. Ensor, Christopher J. Weir & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>

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Package utilsIPEA updated to version 0.0.6 with previous version 0.0.5 dated 2017-11-13

Title: IPEA Common Functions
Description: The most used functions on IPEA (Instituto de Pesquisa Economica Aplicada). Most of functions deal with brazilian names. It can guess the women single's name, extract prepositions or extract the first name.
Author: Gustavo Coelho [aut, cre], Lucas Mation [aut], Daniel Lima [ctb], Igor Noberto [ctb], João Victor Machado [ctb]
Maintainer: Gustavo Coelho <gustavo.coelho@ipea.gov.br>

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Package tawny updated to version 2.1.7 with previous version 2.1.6 dated 2016-07-10

Title: Clean Covariance Matrices Using Random Matrix Theory and Shrinkage Estimators for Portfolio Optimization
Description: Portfolio optimization typically requires an estimate of a covariance matrix of asset returns. There are many approaches for constructing such a covariance matrix, some using the sample covariance matrix as a starting point. This package provides implementations for two such methods: random matrix theory and shrinkage estimation. Each method attempts to clean or remove noise related to the sampling process from the sample covariance matrix.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>

Diff between tawny versions 2.1.6 dated 2016-07-10 and 2.1.7 dated 2018-04-20

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Permanent link

Package promote updated to version 1.0.2 with previous version 1.0.1 dated 2018-01-22

Title: Client for the 'Alteryx Promote' API
Description: Deploy, maintain, and invoke predictive models using the 'Alteryx Promote' REST API. 'Alteryx Promote' is available at the URL: <https://www.alteryx.com/products/alteryx-promote>.
Author: Paul E. Promote <promotedev@alteryx.com>
Maintainer: Paul E. Promote <promotedev@alteryx.com>

Diff between promote versions 1.0.1 dated 2018-01-22 and 1.0.2 dated 2018-04-20

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Package polywog updated to version 0.4-1 with previous version 0.4-0 dated 2014-04-24

Title: Bootstrapped Basis Regression with Oracle Model Selection
Description: Routines for flexible functional form estimation via basis regression, with model selection via the adaptive LASSO or SCAD to prevent overfitting.
Author: Brenton Kenkel and Curtis S. Signorino
Maintainer: Brenton Kenkel <brenton.kenkel@gmail.com>

Diff between polywog versions 0.4-0 dated 2014-04-24 and 0.4-1 dated 2018-04-20

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Package partykit updated to version 1.2-1 with previous version 1.2-0 dated 2017-12-18

Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and visualizing tree-structured regression and classification models. This unified infrastructure can be used for reading/coercing tree models from different sources ('rpart', 'RWeka', 'PMML') yielding objects that share functionality for print()/plot()/predict() methods. Furthermore, new and improved reimplementations of conditional inference trees (ctree()) and model-based recursive partitioning (mob()) from the 'party' package are provided based on the new infrastructure. A description of this package was published by Hothorn and Zeileis (2015) <http://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>), Heidi Seibold [ctb] (<https://orcid.org/0000-0002-8960-9642>), Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between partykit versions 1.2-0 dated 2017-12-18 and 1.2-1 dated 2018-04-20

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Package tawny.types updated to version 1.1.5 with previous version 1.1.3 dated 2014-05-06

Title: Common Types for Tawny
Description: Base library of types for tawny and related packages. This is meant to be a common library and has no functionality aside from defining types.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>

Diff between tawny.types versions 1.1.3 dated 2014-05-06 and 1.1.5 dated 2018-04-20

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Package psidR updated to version 1.5 with previous version 1.4 dated 2016-10-29

Title: Build Panel Data Sets from PSID Raw Data
Description: Makes it easy to build panel data in wide format from Panel Survey of Income Dynamics ('PSID') delivered raw data. Deals with data downloaded and pre-processed by 'Stata' or 'SAS', or can optionally download directly from the PSID server using the 'SAScii' package. 'psidR' takes care of merging data from each wave onto a cross-period index file, so that individuals can be followed over time. The user must specify which years they are interested in, and the 'PSID' variable names (e.g. ER21003) for each year (they differ in each year). The package offers helper functions to retrieve variable names from different waves. There are different panel data designs and sample subsetting criteria implemented ("SRC", "SEO", "immigrant" and "latino" samples).
Author: Florian Oswald
Maintainer: Florian Oswald <florian.oswald@gmail.com>

Diff between psidR versions 1.4 dated 2016-10-29 and 1.5 dated 2018-04-20

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Package ProjectTemplate updated to version 0.8.2 with previous version 0.8 dated 2017-08-09

Title: Automates the Creation of New Statistical Analysis Projects
Description: Provides functions to automatically build a directory structure for a new R project. Using this structure, 'ProjectTemplate' automates data loading, preprocessing, library importing and unit testing.
Author: Aleksandar Blagotic [ctb], Diego Valle-Jones [ctb], Jeffrey Breen [ctb], Joakim Lundborg [ctb], John Myles White [aut, cph], Josh Bode [ctb], Kenton White [ctb, cre], Kirill Mueller [ctb], Matteo Redaelli [ctb], Noah Lorang [ctb], Patrick Schalk [ctb], Dominik Schneider [ctb]
Maintainer: Kenton White <jkentonwhite@gmail.com>

Diff between ProjectTemplate versions 0.8 dated 2017-08-09 and 0.8.2 dated 2018-04-20

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Package lambda.r updated to version 1.2.2 with previous version 1.2 dated 2017-09-16

Title: Modeling Data with Functional Programming
Description: A language extension to efficiently write functional programs in R. Syntax extensions include multi-part function definitions, pattern matching, guard statements, built-in (optional) type safety.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>

Diff between lambda.r versions 1.2 dated 2017-09-16 and 1.2.2 dated 2018-04-20

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Package ipumsr updated to version 0.2.0 with previous version 0.1.1 dated 2017-12-15

Title: Read 'IPUMS' Extract Files
Description: An easy way to import census, survey and geographic data provided by 'IPUMS' into R plus tools to help use the associated metadata to make analysis easier. 'IPUMS' data describing 1.4 billion individuals drawn from over 750 censuses and surveys is available free of charge from our website <https://ipums.org>.
Author: Greg Freedman Ellis [aut, cre], Derek Burk [ctb], Joe Grover [ctb], Minnesota Population Center [cph]
Maintainer: Greg Freedman Ellis <gfellis@umn.edu>

Diff between ipumsr versions 0.1.1 dated 2017-12-15 and 0.2.0 dated 2018-04-20

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Package futile.matrix updated to version 1.2.7 with previous version 1.2.6 dated 2016-07-10

Title: Random Matrix Generation and Manipulation
Description: A collection of functions for manipulating matrices and generating ensembles of random matrices. Used primarily to identify the cutoff point for the noise portion of the eigenvalue spectrum.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>

Diff between futile.matrix versions 1.2.6 dated 2016-07-10 and 1.2.7 dated 2018-04-20

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Package RealVAMS updated to version 0.4-1 with previous version 0.4-0 dated 2017-08-14

Title: Multivariate VAM Fitting
Description: Fits a multivariate value-added model (VAM), see Broatch and Lohr (2012) <doi:10.3102/1076998610396900>, with normally distributed test scores and a binary outcome indicator. A pseudo-likelihood approach, Wolfinger (1993) <doi:10.1080/00949659308811554>, is used for the estimation of this joint generalized linear mixed model. The inner loop of the pseudo-likelihood routine (estimation of a linear mixed model) occurs in the framework of the EM algorithm presented by Karl, Yang, and Lohr (2013) <DOI:10.1016/j.csda.2012.10.004>. This material is based upon work supported by the National Science Foundation under grants DRL-1336027 and DRL-1336265.
Author: Andrew T. Karl, Jennifer Broatch, and Jennifer Green
Maintainer: Andrew Karl <akarl@asu.edu>

Diff between RealVAMS versions 0.4-0 dated 2017-08-14 and 0.4-1 dated 2018-04-20

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Package BAMBI updated to version 1.2.1 with previous version 1.1.1 dated 2017-08-28

Title: Bivariate Angular Mixture Models
Description: Fit (using Bayesian methods) and simulate mixtures of univariate and bivariate angular distributions. Chakraborty and Wong (2017) <arXiv:1708.07804> .
Author: Saptarshi Chakraborty, Samuel W.K. Wong
Maintainer: Saptarshi Chakraborty <c7rishi@ufl.edu>

Diff between BAMBI versions 1.1.1 dated 2017-08-28 and 1.2.1 dated 2018-04-20

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Package biolink updated to version 0.1.4 with previous version 0.1.3 dated 2017-12-04

Title: Create Hyperlinks to Biological Databases and Resources
Description: Generate urls and hyperlinks to commonly used biological databases and resources based on standard identifiers. This is primarily useful when writing dynamic reports that reference things like gene symbols in text or tables, allowing you to, for example, convert gene identifiers to hyperlinks pointing to their entry in the NCBI Gene database. Currently supports NCBI Gene, PubMed, Gene Ontology, CRAN and Bioconductor.
Author: Aaron Wolen [aut, cre]
Maintainer: Aaron Wolen <aaron@wolen.com>

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Package wiqid updated to version 0.1.5 with previous version 0.1.4 dated 2018-04-20

Title: Quick and Dirty Estimates for Wildlife Populations
Description: Provides simple, fast functions for maximum likelihood and Bayesian estimates of wildlife population parameters, suitable for use with simulated data or bootstraps. Early versions were indeed quick and dirty, but optional error-checking routines and meaningful error messages have been added. Includes single and multi-season occupancy, closed capture population estimation, survival, species richness and distance measures.
Author: Mike Meredith
Maintainer: Mike Meredith <mmeredith@wcs.org>

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Package party updated to version 1.3-0 with previous version 1.2-4 dated 2017-12-13

Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning. The core of the package is ctree(), an implementation of conditional inference trees which embed tree-structured regression models into a well defined theory of conditional inference procedures. This non-parametric class of regression trees is applicable to all kinds of regression problems, including nominal, ordinal, numeric, censored as well as multivariate response variables and arbitrary measurement scales of the covariates. Based on conditional inference trees, cforest() provides an implementation of Breiman's random forests. The function mob() implements an algorithm for recursive partitioning based on parametric models (e.g. linear models, GLMs or survival regression) employing parameter instability tests for split selection. Extensible functionality for visualizing tree-structured regression models is available. The methods are described in Hothorn et al. (2006) <doi:10.1198/106186006X133933>, Zeileis et al. (2008) <doi:10.1198/106186008X319331> and Strobl et al. (2007) <doi:10.1186/1471-2105-8-25>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>), Kurt Hornik [aut], Carolin Strobl [aut], Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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Package lmSubsets updated to version 0.2 with previous version 0.1 dated 2018-03-22

Title: Exact Variable-Subset Selection in Linear Regression
Description: Exact and approximation algorithms for variable-subset selection in ordinary linear regression models.
Author: Marc Hofmann [aut, cre], Cristian Gatu [aut], Erricos J. Kontoghiorghes [aut], Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>), Martin Moene [cph] (for the GSL Lite library), Microsoft Corporation [cph] (for the GSL Lite library), Free Software Foundation, Inc. [cph] (for snippets from the GNU ISO C++ Library)
Maintainer: Marc Hofmann <marc.hofmann@gmail.com>

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Package BayesSAE updated to version 1.0-2 with previous version 1.0-1 dated 2013-10-28

Title: Bayesian Analysis of Small Area Estimation
Description: Provides a variety of methods from Rao (2003, ISBN:0-471-41374-7) and some other research articles to deal with several specific small area area- level models in Bayesian framework. Models provided range from the basic Fay-Herriot model to its improvement such as You-Chapman models, unmatched models, spatial models and so on. Different types of priors for specific parameters could be chosen to obtain MCMC posterior draws. The main sampling function is written in C with GSL lab so as to facilitate the computation. Model internal checking and model comparison criteria are also involved.
Author: Chengchun Shi Developer [aut, cre]
Maintainer: Chengchun Shi Developer <cshi4@ncsu.edu>

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Package alr4 updated to version 1.0.6 with previous version 1.0.5 dated 2014-09-26

Title: Data to Accompany Applied Linear Regression 4th Edition
Description: Datasets to Accompany S. Weisberg (2014, ISBN: 978-1-118-38608-8), "Applied Linear Regression," 4th edition. Many data files in this package are included in the `alr3` package as well, so only one of them should be used.
Author: Sanford Weisberg <sandy@umn.edu>
Maintainer: Sanford Weisberg <sandy@umn.edu>

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Package SPEDInstabR updated to version 1.6 with previous version 1.5 dated 2017-09-06

Title: Estimation of the Relative Importance of Factors Affecting Species Distribution Based on Stability Concept
Description: From output files obtained from the software 'ModestR', the relative contribution of factors to explain species distribution is depicted using several plots. A global geographic raster file for each environmental variable may be also obtained with the mean relative contribution, considering all species present in each raster cell, of the factor to explain species distribution. Finally, for each variable it is also possible to compare the frequencies of any variable obtained in the cells where the species is present with the frequencies of the same variable in the cells of the extent.
Author: Cstor Guisande Gonzlez
Maintainer: Cstor Guisande Gonzlez <castor@uvigo.es>

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Package mlt updated to version 1.0-1 with previous version 1.0-0 dated 2018-03-08

Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation models via the most likely transformation approach described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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Package gProfileR updated to version 0.6.6 with previous version 0.6.5 dated 2018-04-13

Title: Interface to the 'g:Profiler' Toolkit
Description: Functional enrichment analysis, gene identifier conversion and mapping homologous genes across related organisms via the 'g:Profiler' toolkit (<https://biit.cs.ut.ee/gprofiler/>).
Author: Juri Reimand <juri.reimand@ut.ee>, Raivo Kolde <rkolde@gmail.com>, Tambet Arak <tambet.arak@gmail.com>
Maintainer: Ivan Kuzmin <ivan.kuzmin@ut.ee>

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Package ctmcmove updated to version 1.2.9 with previous version 1.2.8 dated 2017-04-04

Title: Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
Description: Software to facilitates taking movement data in xyt format and pairing it with raster covariates within a continuous time Markov chain (CTMC) framework. As described in Hanks et al. (2015) <DOI:10.1214/14-AOAS803> , this allows flexible modeling of movement in response to covariates (or covariate gradients) with model fitting possible within a Poisson GLM framework.
Author: Ephraim Hanks
Maintainer: Ephraim Hanks <hanks@psu.edu>

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Package RECA updated to version 1.5 with previous version 1.3 dated 2016-11-12

Title: Relevant Component Analysis for Supervised Distance Metric Learning
Description: Relevant Component Analysis (RCA) tries to find a linear transformation of the feature space such that the effect of irrelevant variability is reduced in the transformed space.
Author: Nan Xiao [aut, cre] (<https://orcid.org/0000-0002-0250-5673>)
Maintainer: Nan Xiao <me@nanx.me>

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Package PET updated to version 0.5.1 with previous version 0.5.0 dated 2018-02-05

Title: Simulation and Reconstruction of PET Images
Description: Implementation of different analytic/direct and iterative reconstruction methods of radon transformed data such as PET data. It also offer the possibility to simulate PET data.
Author: Joern Schulz <jschulz78@web.de>, Peter Toft <pto@imm.dtu.dk>, Jesper James Jensen <jjj@oedan.dk>, Peter Philipsen <pap@imm.dtu.dk>
Maintainer: Joern Schulz <jschulz78@web.de>

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Package mlogit updated to version 0.3-0 with previous version 0.2-4 dated 2013-12-27

Title: Multinomial Logit Models
Description: Maximum Likelihood estimation of random utility discrete choice models (logit and probit).
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>

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Package sbpiper updated to version 1.7.0 with previous version 1.6.0 dated 2018-03-22

Title: Data Analysis Functions for 'SBpipe' Package
Description: Provides an API for analysing repetitive parameter estimations and simulations of mathematical models. Examples of mathematical models are Ordinary Differential equations (ODEs) or Stochastic Differential Equations (SDEs) models. Among the analyses for parameter estimation 'sbpiper' calculates statistics and generates plots for parameter density, PCA of the best fits, parameter profile likelihood estimations (PLEs), and 2D parameter PLEs. These results can be generated using all or a subset of the best computed parameter sets. Among the analyses for model simulation 'sbpiper' calculates statistics and generates plots for deterministic and stochastic time courses via cartesian and heatmap plots. Plots for the scan of one or two model parameters can also be generated. This package is primarily used by the software 'SBpipe'. Citation: Dalle Pezze P, Le Novère N. SBpipe: a collection of pipelines for automating repetitive simulation and analysis tasks. BMC Systems Biology. 2017;11:46. <doi:10.1186/s12918-017-0423-3>.
Author: Piero Dalle Pezze [aut, cre, cph] (<https://orcid.org/0000-0003-1695-6763>)
Maintainer: Piero Dalle Pezze <piero.dallepezze@gmail.com>

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New package NITPicker with initial version 0.1.1
Package: NITPicker
Type: Package
Title: Finds the Best Subset of Points to Sample
Version: 0.1.1
Author: Daphne Ezer
Maintainer: Daphne Ezer <dezer@turing.ac.uk>
Description: Given a few examples of experiments over a time (or spatial) course, 'NITPicker' selects a subset of points to sample in follow-up experiments, which would (i) best distinguish between the experimental conditions and the control condition (ii) best distinguish between two models of how the experimental condition might differ from the control (iii) a combination of the two. Ezer and Keir (2018) <doi:10.1101/301796>.
License: GPL (>= 2)
Encoding: UTF-8
Depends: fdasrvf, fda, stats, fda.usc
URL: https://doi.org/10.1101/301796, https://daphneezer.wordpress.com
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-04-20 10:15:47 UTC; dezer
Repository: CRAN
Date/Publication: 2018-04-20 11:32:40 UTC

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Package Luminescence updated to version 0.8.4 with previous version 0.8.3 dated 2018-04-19

Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence dating data analysis. This includes, amongst others, data import, export, application of age models, curve deconvolution, sequence analysis and plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc] (<https://orcid.org/0000-0002-0734-2199>), Christoph Burow [aut, trl, dtc] (<https://orcid.org/0000-0002-5023-4046>), Michael Dietze [aut] (<https://orcid.org/0000-0001-6063-1726>), Margret C. Fuchs [aut], Christoph Schmidt [aut] (<https://orcid.org/0000-0002-2309-3209>), Manfred Fischer [aut, trl], Johannes Friedrich [aut], Norbert Mercier [ctb], Rachel K. Smedley [ctb] (<https://orcid.org/0000-0001-7773-5193>), Claire Christophe [ctb], Antoine Zink [ctb], Julie Durcan [ctb] (<https://orcid.org/0000-0001-8724-8022>), Georgina E. King [ctb, dtc] (<https://orcid.org/0000-0003-1059-8192>), Anne Philippe [ctb], Guillaume Guerin [ctb] (<https://orcid.org/0000-0001-6298-5579>), Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>

Diff between Luminescence versions 0.8.3 dated 2018-04-19 and 0.8.4 dated 2018-04-20

 DESCRIPTION                            |    6 
 MD5                                    |  236 ++++++++++++++++-----------------
 NEWS                                   |    7 
 R/Luminescence-package.R               |    7 
 R/analyse_Al2O3C_Measurement.R         |    2 
 inst/NEWS.Rd                           |   14 +
 man/Analyse_SAR.OSLdata.Rd             |    2 
 man/CW2pHMi.Rd                         |    2 
 man/CW2pLM.Rd                          |    2 
 man/CW2pLMi.Rd                         |    2 
 man/CW2pPMi.Rd                         |    2 
 man/GitHub-API.Rd                      |    2 
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 man/PSL2Risoe.BINfileData.Rd           |    2 
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 man/Second2Gray.Rd                     |    2 
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 tests/testthat/test_app_RLum.R         |   13 +
 119 files changed, 280 insertions(+), 238 deletions(-)

More information about Luminescence at CRAN
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Package CRPClustering updated to version 1.1 with previous version 1.0 dated 2018-01-15

Title: Bayesian Nonparametric Chinese Restaurant Process Clustering with Entropy
Description: Chinese restaurant process [Pitman (1995) <doi:10.1007/BF01213386>] is used in order to compose Dirichlet process [Ferguson (1973) <doi:10.1214/aos/1176342360>]. The clustering which uses Chinese restaurant process does not need to decide the number of clusters in advance. This algorithm automatically adjusts it. And this package calculates the ambiguity of clusters as entropy [Yngvason (1999) <doi:10.1016/S0370-1573(98)00082-9>].
Author: Masashi Okada [aut, cre]
Maintainer: Masashi Okada <okadaalgorithm@gmail.com>

Diff between CRPClustering versions 1.0 dated 2018-01-15 and 1.1 dated 2018-04-20

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 CRPClustering-1.1/CRPClustering/inst/doc/CRPClustering-vignette.R    |    4 
 CRPClustering-1.1/CRPClustering/inst/doc/CRPClustering-vignette.Rmd  |   56 +--
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 16 files changed, 248 insertions(+), 107 deletions(-)

More information about CRPClustering at CRAN
Permanent link

Package corpustools updated to version 0.3.3 with previous version 0.3.1 dated 2017-12-13

Title: Managing, Querying and Analyzing Tokenized Text
Description: Provides text analysis in R, focusing on the use of a tokenized text format. In this format, the positions of tokens are maintained, and each token can be annotated (e.g., part-of-speech tags, dependency relations). Prominent features include advanced Lucene-like querying for specific tokens or contexts (e.g., documents, sentences), similarity statistics for words and documents, exporting to DTM for compatibility with many text analysis packages, and the possibility to reconstruct original text from tokens to facilitate interpretation.
Author: Kasper Welbers and Wouter van Atteveldt
Maintainer: Kasper Welbers <kasperwelbers@gmail.com>

Diff between corpustools versions 0.3.1 dated 2017-12-13 and 0.3.3 dated 2018-04-20

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 corpustools-0.3.3/corpustools/R/RcppExports.R                            |   32 
 corpustools-0.3.3/corpustools/R/collocations.r                           |    2 
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 corpustools-0.3.3/corpustools/R/kwic.r                                   |    3 
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 corpustools-0.3.3/corpustools/tests/testthat.r                           |    5 
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 corpustools-0.3.3/corpustools/tests/testthat/test_preprocessing.r        |   11 
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 corpustools-0.3.3/corpustools/tests/testthat/test_semnet.r               |   10 
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 corpustools-0.3.3/corpustools/tests/testthat/test_topicmodels.r          |   10 
 90 files changed, 944 insertions(+), 754 deletions(-)

More information about corpustools at CRAN
Permanent link

Package attempt updated to version 0.2.1 with previous version 0.2.0 dated 2018-01-31

Title: Easy Condition Handling
Description: A friendlier condition handler, inspired by 'purrr' mappers and based on 'rlang'.'attempt' extends and facilitates condition handling by providing a consistent grammar, and provides a set of easy to use functions for common tests and conditions. 'attempt' only depends on 'rlang', and focuses on speed, so it can be easily integrated in other functions and used in data analysis.
Author: Colin Fay [aut, cre]
Maintainer: Colin Fay <contact@colinfay.me>

Diff between attempt versions 0.2.0 dated 2018-01-31 and 0.2.1 dated 2018-04-20

 DESCRIPTION                    |    6 +++---
 LICENSE                        |    2 +-
 MD5                            |   34 +++++++++++++++++-----------------
 NAMESPACE                      |    2 ++
 NEWS.md                        |    5 +++++
 R/adverbs.R                    |   28 +++++++++++++++++++++++++++-
 R/try_catch.R                  |   19 ++++++++-----------
 README.md                      |   26 +++++++++++++++-----------
 build/vignette.rds             |binary
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 inst/doc/c_adverbs.html        |    4 ++--
 inst/doc/d_if.html             |    8 ++++----
 inst/doc/e_conditions.html     |    4 ++--
 man/messagefunctions.Rd        |   11 +++++++++--
 tests/testthat/test-trycatch.R |   20 +++++++++++++++++---
 vignettes/b_try_catch.Rmd      |    1 -
 18 files changed, 117 insertions(+), 64 deletions(-)

More information about attempt at CRAN
Permanent link

New package refuge with initial version 0.1.1
Package: refuge
Version: 0.1.1
Title: Locate Trans and Intersex-Friendly Toilets
Description: Access the 'Refuge' API, a web-application for locating trans and intersex-friendly restrooms, including unisex and accessible restrooms. Includes data on the location of restrooms, along with directions, comments, user ratings and amenities. Coverage is global, but data is most comprehensive in the United States. See <https://www.refugerestrooms.org/api/docs/> for full API documentation.
Authors@R: person("Evan", "Odell", email = "evanodell91@gmail.com", role = c("aut", "cre"), comment = c(ORCID='0000-0003-1845-808X'))
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
ByteCompile: true
Imports: jsonlite, tibble, dplyr, httr
RoxygenNote: 6.0.1
URL: https://github.com/evanodell/refuge
BugReports: https://github.com/evanodell/refuge/issues
Suggests: covr, testthat, knitr, rmarkdown, fiftystater, ggplot2, magrittr, viridis, scales, mapproj
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-04-18 13:44:38 UTC; evanodell
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Repository: CRAN
Date/Publication: 2018-04-20 10:45:30 UTC

More information about refuge at CRAN
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Package meaRtools updated to version 1.0.3 with previous version 1.0.2 dated 2017-12-10

Title: Micro-Electro Array (MEA) Analysis
Description: Core algorithms for MEA spike train analysis, feature extraction, statistical analysis and plotting of multiple MEA recordings with multiple genotypes and treatments, published by Gelfman et al (2017) at <https://github.com/igm-team/meaRtools/>.
Author: Quanli Wang [aut, ctb], Sahar Gelfman [aut, ctb, cre], Diana Hall [aut, ctb], Ryan Dhindsa [aut, ctb], Matt Halvorsen [aut, ctb], Ellese Cotterill [aut, ctb], Tom Edinburgh [aut, ctb], Stephen J. Eglen [aut, ctb, ths]
Maintainer: Sahar Gelfman <sahar.gelfman@columbia.edu>

Diff between meaRtools versions 1.0.2 dated 2017-12-10 and 1.0.3 dated 2018-04-20

 DESCRIPTION                           |    8 ++++----
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 15 files changed, 103 insertions(+), 80 deletions(-)

More information about meaRtools at CRAN
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Package votesys updated to version 0.1.1 with previous version 0.1.0 dated 2018-03-15

Title: Voting Systems, Instant-Runoff Voting, Borda Method, Various Condorcet Methods
Description: Various methods to count ballots in voting systems are provided. Functions to check validity of ballots are also provided to ensure flexibility.
Author: Jiang Wu [aut, cre] (from Capital Normal University)
Maintainer: Jiang Wu <textidea@sina.com>

Diff between votesys versions 0.1.0 dated 2018-03-15 and 0.1.1 dated 2018-04-20

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Package shiny.semantic updated to version 0.2.0 with previous version 0.1.2 dated 2018-04-10

Title: Semantic UI Support for Shiny
Description: Creating a great user interface for your Shiny apps can be a hassle, especially if you want to work purely in R and don't want to use, for instance HTML templates. This package adds support for a powerful UI library Semantic UI - <http://semantic-ui.com/>. It also supports universal UI input binding that works with various DOM elements.
Author: Filip Stachura [aut, cre]
Maintainer: Filip Stachura <filip@appsilondatascience.com>

Diff between shiny.semantic versions 0.1.2 dated 2018-04-10 and 0.2.0 dated 2018-04-20

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Package MVN updated to version 5.2 with previous version 5.1 dated 2018-03-22

Title: Multivariate Normality Tests
Description: Performs multivariate normality tests and graphical approaches and implements multivariate outlier detection and univariate normality of marginal distributions through plots and tests (Korkmaz et al, (2014), <https://journal.r-project.org/archive/2014-2/korkmaz-goksuluk-zararsiz.pdf>).
Author: Selcuk Korkmaz [aut, cre], Dincer Goksuluk [aut], Gokmen Zararsiz [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>

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Package interflex updated to version 1.0.4 with previous version 1.0.3 dated 2017-03-05

Title: Multiplicative Interaction Models Diagnostics and Visualization
Description: Performs diagnostic tests of multiplicative interaction models and plots non-linear marginal effects of a treatment on an outcome across different values of a moderator.
Author: Jens Hainmueller, Jonathan Mummolo and Yiqing Xu
Maintainer: Yiqing Xu <yiqingxu@ucsd.edu>

Diff between interflex versions 1.0.3 dated 2017-03-05 and 1.0.4 dated 2018-04-20

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Package BSagri updated to version 0.1-10 with previous version 0.1-8 dated 2013-11-21

Title: Safety Assessment in Agricultural Field Trials
Description: Collection of functions, data sets and code examples for evaluations of field trials with the objective of equivalence assessment.
Author: Frank Schaarschmidt
Maintainer: Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>

Diff between BSagri versions 0.1-8 dated 2013-11-21 and 0.1-10 dated 2018-04-20

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Package RM.weights updated to version 2.0 with previous version 1.0 dated 2016-07-15

Title: Weighted Rasch Modeling and Extensions using Conditional Maximum Likelihood
Description: Rasch model and extensions for survey data, using Conditional Maximum likelihood (CML). Carlo Cafiero, Sara Viviani, Mark Nord (2018) <doi:10.1016/j.measurement.2017.10.065>.
Author: Carlo Cafiero, Sara Viviani, Mark Nord
Maintainer: Sara Viviani <sara.viviani@yahoo.it>

Diff between RM.weights versions 1.0 dated 2016-07-15 and 2.0 dated 2018-04-20

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New package processanimateR with initial version 0.1.1
Package: processanimateR
Type: Package
Title: Process Map Token Replay Animation
Version: 0.1.1
Authors@R: person("Felix","Mannhardt", email = "felix.mannhardt@sintef.no", role = c("aut","cre"))
Description: Token replay animation for process maps created with 'processmapR' by using SVG animations ('SMIL') and the 'htmlwidget' package.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: bupaR, processmapR, rlang, magrittr, dplyr, shiny, tidyr, htmlwidgets, DiagrammeR, DiagrammeRsvg, RColorBrewer, zoo, scales, shinycssloaders
Suggests: eventdataR, edeaR
RoxygenNote: 6.0.1
URL: https://github.com/fmannhardt/processanimateR/
BugReports: https://github.com/fmannhardt/processanimateR/issues
NeedsCompilation: no
Packaged: 2018-04-19 13:50:56 UTC; felixm
Author: Felix Mannhardt [aut, cre]
Maintainer: Felix Mannhardt <felix.mannhardt@sintef.no>
Repository: CRAN
Date/Publication: 2018-04-20 08:51:22 UTC

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New package C443 with initial version 1.0.0
Package: C443
Type: Package
Title: See a Forest for the Trees
Version: 1.0.0
Imports: MASS, partykit, rpart, RColorBrewer, grDevices, gridExtra, ggplot2, cluster, parallel, igraph, reshape2, qgraph, stats, graphics
LazyData: true
Date: 2018-04-18
Authors@R: c(person("Aniek","Sies",role=c("aut","cre"),email="aniek.sies@kuleuven.be"),person("Iven","Van Mechelen",role="ths"))
Description: Getting insight into a forest of classification trees, by calculating similarities between the trees, and subsequently clustering them. Each cluster is represented by it's most central cluster member. Sies, A & Van Mechelen, I. (paper submitted for publication).
License: GPL (>= 2)
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-04-19 11:43:49 UTC; u0098197
Author: Aniek Sies [aut, cre], Iven Van Mechelen [ths]
Maintainer: Aniek Sies <aniek.sies@kuleuven.be>
Repository: CRAN
Date/Publication: 2018-04-20 08:29:09 UTC

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Package qlcMatrix updated to version 0.9.7 with previous version 0.9.5 dated 2015-10-09

Title: Utility Sparse Matrix Functions for Quantitative Language Comparison
Description: Extension of the functionality of the Matrix package for using sparse matrices. Some of the functions are very general, while other are highly specific for special data format as used for quantitative language comparison (QLC).
Author: Michael Cysouw
Maintainer: Michael Cysouw <cysouw@mac.com>

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Package PMA updated to version 1.0.11 with previous version 1.0.9 dated 2013-03-25

Title: Penalized Multivariate Analysis
Description: Performs Penalized Multivariate Analysis: a penalized matrix decomposition, sparse principal components analysis, and sparse canonical correlation analysis, described in the following papers: (1) Witten, Tibshirani and Hastie (2009) A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. Biostatistics 10(3):515-534. (2) Witten and Tibshirani (2009) Extensions of sparse canonical correlation analysis, with applications to genomic data. Statistical Applications in Genetics and Molecular Biology 8(1): Article 28.
Author: Daniela Witten and Rob Tibshirani and Sam Gross and Balasubramanian Narasimhan
Maintainer: ORPHANED

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Package europepmc updated to version 0.3 with previous version 0.2 dated 2017-12-11

Title: R Interface to the Europe PubMed Central RESTful Web Service
Description: An R Client for the Europe PubMed Central RESTful Web Service (see <https://europepmc.org/RestfulWebService> for more information). It gives access to both metadata on life science literature and open access full texts. Europe PMC indexes all PubMed content and other literature sources including Agricola, a bibliographic database of citations to the agricultural literature, or Biological Patents. In addition to bibliographic metadata, the client allows users to fetch citations and reference lists. Links between life-science literature and other EBI databases, including ENA, PDB or ChEMBL are also accessible. No registration or API key is required. See the vignettes for usage examples.
Author: Najko Jahn [aut, cre, cph], Maëlle Salmon [ctb]
Maintainer: Najko Jahn <najko.jahn@gmail.com>

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Package binMto updated to version 0.0-7 with previous version 0.0-6 dated 2013-10-09

Title: Many-to-One Comparisons of Proportions
Description: Asymptotic simultaneous confidence intervals for comparison of many treatments with one control, for the difference of binomial proportions, allows for Dunnett-like-adjustment, Bonferroni or unadjusted intervals. Simulation of power of the above interval methods, approximate calculation of any-pair-power, and sample size iteration based on approximate any-pair power. Exact conditional maximum test for many-to-one comparisons to a control.
Author: Frank Schaarschmidt
Maintainer: Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>

Diff between binMto versions 0.0-6 dated 2013-10-09 and 0.0-7 dated 2018-04-20

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Package camel (with last version 0.2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-09 0.2.0
2013-08-24 0.1.0

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Package mlrCPO (with last version 0.3.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-04-05 0.3.2

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Package ldstatsHD (with last version 1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-08-14 1.0.1
2016-08-18 1.0.0

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Package eulerr updated to version 4.1.0 with previous version 4.0.0 dated 2018-02-05

Title: Area-Proportional Euler and Venn Diagrams with Circles or Ellipses
Description: Generate area-proportional Euler diagrams using numerical optimization. An Euler diagram is a generalization of a Venn diagram, relaxing the criterion that all interactions need to be represented. Diagrams may be fit with ellipses and circles via a wide range of inputs and can be visualized in numerous ways.
Author: Johan Larsson [aut, cre] (<https://orcid.org/0000-0002-4029-5945>), A. Jonathan R. Godfrey [ctb], Tim Kelley [ctb] (original Nelder-Mead code), David H. Eberly [ctb] (geometric algorithms), Peter Gustafsson [ctb], Emanuel Huber [ctb] (root solver code)
Maintainer: Johan Larsson <johanlarsson@outlook.com>

Diff between eulerr versions 4.0.0 dated 2018-02-05 and 4.1.0 dated 2018-04-20

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Package IGM.MEA (with last version 0.3.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-03-05 0.3.5
2016-11-17 0.3.4.1
2016-08-31 0.3.4
2016-08-02 0.3.3
2016-05-13 0.3.2
2016-04-01 0.3.1
2016-03-01 0.3.0

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