Wed, 07 Dec 2016

Package transport updated to version 0.8-1 with previous version 0.7-3 dated 2016-02-24

Title: Optimal Transport in Various Forms
Description: Solve optimal transport problems. Compute Wasserstein metrics (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p metrics), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, (weighted) point patterns, and mass vectors.
Author: Dominic Schuhmacher [aut, cre], Björn Bähre [aut] (aha and power diagrams), Carsten Gottschlich [aut] (simplex und shortlist), Florian Heinemann [aut] (transport_track), Timo Wilm [ctb] (wpp)
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>

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Package mregions updated to version 0.1.4 with previous version 0.1.0 dated 2016-08-03

Title: Marine Regions Data from 'Marineregions.org'
Description: Tools to get marine regions data from <http:// www.marineregions.org/>. Includes tools to get region metadata, as well as data in 'GeoJSON' format, as well as Shape files. Use cases include using data downstream to visualize 'geospatial' data by marine region, mapping variation among different regions, and more.
Author: Scott Chamberlain [aut, cre], Francois Michonneau [ctb], Pieter Provoost [ctb], Michael Sumner [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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Package ecm updated to version 0.3.0 with previous version 0.2.0 dated 2016-12-02

Title: Build Error Correction Models
Description: Functions for easy building of error correction models (ECM) for time series regression.
Author: Gaurav Bansal
Maintainer: Gaurav Bansal <gaurbans@gmail.com>

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Package subcopem2D updated to version 1.1 with previous version 1.0-0 dated 2016-04-25

Title: Bivariate Empirical Subcopula
Description: Calculate empirical subcopula and dependence measures from a given bivariate sample.
Author: Arturo Erdely
Maintainer: Arturo Erdely <arturo.erdely@comunidad.unam.mx>

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Package simstudy updated to version 0.1.2 with previous version 0.1.1 dated 2016-06-21

Title: Simulation of Study Data
Description: Simulates data sets in order to explore modeling techniques or better understand data generating processes. The user specifies a set of relationships between covariates, and generates data based on these specifications. The final data sets can represent data from randomized control trials, repeated measure (longitudinal) designs, and cluster randomized trials. Missingness can be generated using various mechanisms (MCAR, MAR, NMAR).
Author: Keith Goldfeld [aut, cre]
Maintainer: Keith Goldfeld <Keith.Goldfeld@nyumc.org>

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Package NonCompart updated to version 0.2.4 with previous version 0.2.3 dated 2016-11-27

Title: Noncompartmental Analysis for Pharmacokinetic Data
Description: Conduct a noncompartmental analysis as closely as possible to the most widely used commercial software for pharmacokinetic analysis, i.e. 'Phoenix(R) WinNonlin(R)' <https://www.certara.com/software/pkpd-modeling-and-simulation/phoenix-winnonlin/>. Some features include: - Use CDISC SDTM PP domain terms. - Automatic slope selection with the same criterion of WinNonlin(R) - Support both 'linear-up linear-down' and 'linear-up log-down' method - Calculate partial(interval) AUC with 'linear' or 'log' interpolation method For more details on noncompartmental analysis, see the reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107) Acknowldegement: Author thanks for the careful review and valuable input of Dr. Jee Eun Lee.
Author: Kyun-Seop Bae
Maintainer: Kyun-Seop Bae <k@acr.kr>

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Package micromapST updated to version 1.1.1 with previous version 1.1.0 dated 2016-12-06

Title: Linked Micromap Plots for General U. S. and Other Geographic Areas
Description: Provides the users with the ability to quickly create Linked Micromap plots for a collection of geographic areas. Linked Micromaps are visualizations of georeferenced data that link statistical graphics to an organized series of small maps or graphic images. The Help description contains examples of how to use the micromapST function. Contained in this package are border group datasets to support creating micromaps for the 50 U.S. states and District of Columbia (51 areas), the U. S. 20 Seer Registries, the 105 counties in the state of Kansas, the 62 counties of New York, the 24 counties of Maryland, the 29 counties of Utah, the 32 administrative areas in China, the 218 administrative areas in the UK and Ireland (for testing only), the 25 districts in the city of Seoul South Korea, and the 52 counties on the Africa continent. A border group dataset contains the boundaries related to the data level areas, a second layer boundaries, a top or third layer boundary, a parameter list of run options, and a cross indexing table between area names, abbreviations, numeric identification and alias matching strings for the specific geographic area. By specifying a border group, the package create micromaps for any geographic region. The user can create and provide their own border group dataset for any area beyond the areas contained within the package. Copyrighted 2013, 2014, 2015 and 2016 by Carr, Pearson and Pickle.
Author: Jim Pearson <jpearson@statnetconsulting.com> and Dan Carr <dcarr@gmu.edu>, with contributions from Linda Pickle <linda@statnetconsulting.com>.
Maintainer: Jim Pearson <jpearson@statnetconsulting.com>

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Package fsia updated to version 1.1 with previous version 1.0 dated 2015-01-13

Title: Import and Analysis of OMR Data from FormScanner
Description: Import data of tests and questionnaires from FormScanner. FormScanner is an open source software that converts scanned images to data using optical mark recognition (OMR) and it can be downloaded from <http://sourceforge.net/projects/formscanner/>. The spreadsheet file created by FormScanner is imported in a convenient format to perform the analyses provided by the package. These analyses include the conversion of multiple responses to binary (correct/incorrect) data, the computation of the number of corrected responses for each subject or item, scoring using weights,the computation and the graphical representation of the frequencies of the responses to each item and the report of the responses of a few persons.
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>

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Package etasFLP updated to version 1.3.1 with previous version 1.3.0 dated 2015-06-03

Title: Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
Description: Estimation of the components of an ETAS model for earthquake description. Non-parametric background seismicity can be estimated through FLP (Forward Likelihood Predictive), while parametric components are estimated through maximum likelihood. The two estimation steps are alternated until convergence is obtained. For each event the probability of being a background event is estimated and used as a weight for declustering steps. Many options to control the estimation process are present, together with some diagnostic tools. Some descriptive functions for earthquakes catalogs are present; also plot, print, summary, profile methods are defined for main output (objects of class 'etasclass').
Author: Marcello Chiodi [aut, cre], Giada Adelfio [aut]
Maintainer: Marcello Chiodi <marcello.chiodi@unipa.it>

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Package dataRetrieval updated to version 2.6.3 with previous version 2.5.13 dated 2016-09-27

Title: Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey (USGS) and U.S. Environmental Protection Agency (EPA) water quality and hydrology data from web services. USGS web services are discovered from National Water Information System (NWIS) tools. Both EPA and USGS water quality data are obtained from the Water Quality Portal <https://www.waterqualitydata.us/>.
Author: Robert Hirsch [aut], Laura DeCicco [aut, cre], David Lorenz [aut], Jordan Read [ctb], Lindsay Carr [ctb], David Watkins [aut]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>

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Package ChannelAttribution updated to version 1.10 with previous version 1.9 dated 2016-08-24

Title: Markov Model for the Online Multi-Channel Attribution Problem
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. It's called the online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identifying structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare, David Loris
Maintainer: Davide Altomare <davide.altomare@gmail.com>

Diff between ChannelAttribution versions 1.9 dated 2016-08-24 and 1.10 dated 2016-12-07

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Package seeclickfixr updated to version 1.1.0 with previous version 1.0.0 dated 2015-11-13

Title: Access Data from the SeeClickFix Web API
Description: Provides a wrapper to access data from the SeeClickFix web API for R. SeeClickFix is a central platform employed by many cities that allows citizens to request their city's services. This package creates several functions to work with all the built-in calls to the SeeClickFix API. Allows users to download service request data from numerous locations in easy-to-use dataframe format manipulable in standard R functions.
Author: Justin de Benedictis-Kessner [aut, cre], Christian Lemp [ctb]
Maintainer: Justin de Benedictis-Kessner <justindbk@gmail.com>

Diff between seeclickfixr versions 1.0.0 dated 2015-11-13 and 1.1.0 dated 2016-12-07

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Package compareGroups updated to version 3.2.2 with previous version 3.2.1 dated 2016-05-13

Title: Descriptive Analysis by Groups
Description: Create data summaries for quality control, extensive reports for exploring data, as well aspublication-ready univariate or bivariate tablesin several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figuresto quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics(mean, median, frequencies, incidences, etc.). Perform the appropriate tests(t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data(Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Author: Isaac Subirana, Joan Vila, Hctor Sanz, Gavin Lucas, Judith Peafiel and David Gimnez
Maintainer: Isaac Subirana <isubirana@imim.es>

Diff between compareGroups versions 3.2.1 dated 2016-05-13 and 3.2.2 dated 2016-12-07

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Package tesseract updated to version 1.3 with previous version 1.2 dated 2016-11-13

Title: Open Source OCR Engine
Description: An OCR engine with unicode (UTF-8) support that can recognize over 100 languages out of the box.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

Diff between tesseract versions 1.2 dated 2016-11-13 and 1.3 dated 2016-12-07

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Package sf updated to version 0.2-7 with previous version 0.2-6 dated 2016-12-06

Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial data, in R.
Author: Edzer Pebesma [aut, cre], Roger Bivand [ctb], Ian Cook [ctb], Tim Keitt [ctb], Michael Sumner [ctb], Robin Lovelace [ctb], Hadley Wickham [ctb], Jeroen Ooms [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

Diff between sf versions 0.2-6 dated 2016-12-06 and 0.2-7 dated 2016-12-07

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Package RcppAPT updated to version 0.0.3 with previous version 0.0.2 dated 2016-04-04

Title: 'Rcpp' Interface to the APT Package Manager
Description: The 'APT Package Management System' provides Debian and Debian-derived Linux systems with a powerful system to resolve package dependencies. This package offers access directly from R.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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New package narray with initial version 0.1.1
Package: narray
Title: R Package for Handling Arrays in a Consistent Manner
Version: 0.1.1
Author: Michael Schubert <mschu.dev@gmail.com>
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Description: Provides functions to query and manipulate arrays of arbitrary dimensions.
Depends: R (>= 3.0.2)
Imports: abind, pryr, reshape2, stats, stringr, utils
License: Apache License (== 2.0) | file LICENSE
LazyData: true
Encoding: UTF-8
Suggests: knitr, testthat
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-07 11:59:29 UTC; mschu
Repository: CRAN
Date/Publication: 2016-12-07 15:54:20

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Package madsim updated to version 1.2.1 with previous version 1.2 dated 2016-06-16

Title: A Flexible Microarray Data Simulation Model
Description: This function allows to generate two biological conditions synthetic microarray dataset which has similar behavior to those currently observed with common platforms. User provides a subset of parameters. Available default parameters settings can be modified.
Author: Doulaye Dembele
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>

Diff between madsim versions 1.2 dated 2016-06-16 and 1.2.1 dated 2016-12-07

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Package KernelKnn updated to version 1.0.3 with previous version 1.0.2 dated 2016-09-08

Title: Kernel k Nearest Neighbors
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up the calculation of distances between observations.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>

Diff between KernelKnn versions 1.0.2 dated 2016-09-08 and 1.0.3 dated 2016-12-07

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Package icesSAG updated to version 1.2-0 with previous version 1.0 dated 2016-08-09

Title: Stock Assessment Graphs Database Web Services
Description: R interface to access the web services of the ICES (International Council for the Exploration of the Sea) Stock Assessment Graphs database <http://ices.dk/marine-data/tools/Pages/stock-assessment-graphs.aspx>.
Author: Colin Millar [aut, cre], Scott Large [aut], Arni Magnusson [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>

Diff between icesSAG versions 1.0 dated 2016-08-09 and 1.2-0 dated 2016-12-07

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Package hunspell updated to version 2.3 with previous version 2.2 dated 2016-11-09

Title: High-Performance Stemmer, Tokenizer, and Spell Checker for R
Description: A spell checker and morphological analyzer library designed for languages with rich morphology and complex word compounding or character encoding. The package can check and analyze individual words as well as search for incorrect words within a text, latex, html or xml document. Use the 'devtools' package to spell check R documentation with 'hunspell'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

Diff between hunspell versions 2.2 dated 2016-11-09 and 2.3 dated 2016-12-07

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Package aws.signature updated to version 0.2.6 with previous version 0.2.5 dated 2016-08-09

Title: Amazon Web Services Request Signatures
Description: Generates request signatures for Amazon Web Services (AWS) APIs.
Author: Thomas J. Leeper
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>

Diff between aws.signature versions 0.2.5 dated 2016-08-09 and 0.2.6 dated 2016-12-07

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New package EfficientMaxEigenpair with initial version 0.1.0
Package: EfficientMaxEigenpair
Type: Package
Title: Efficient Initials for Computing the Maximal Eigenpair
Version: 0.1.0
Date: 2016-12-03
Author: Mu-Fa Chen <mfchen@bnu.edu.cn>
Maintainer: Xiao-Jun Mao <maoxj.ki@gmail.com>
Description: An implementation for using efficient initials to compute the maximal eigenpair in R. It provides two algorithms to find the efficient initials under two cases: the tridiagonal matrix case and the general matrix case. Besides, it also provides algorithms for the next to the maximal eigenpair under these two cases.
License: MIT + file LICENSE
URL: http://github.com/mxjki/EfficientMaxEigenpair
BugReports: http://github.com/mxjki/EfficientMaxEigenpair/issues
Depends: R (>= 3.3.2), stats
Encoding: UTF-8
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-07 08:16:13 UTC; xiaojunmao
Repository: CRAN
Date/Publication: 2016-12-07 13:46:29

More information about EfficientMaxEigenpair at CRAN
Permanent link

Package teigen updated to version 2.2.0 with previous version 2.1.1 dated 2016-09-11

Title: Model-Based Clustering and Classification with the Multivariate t Distribution
Description: Fits mixtures of multivariate t-distributions (with eigen-decomposed covariance structure) via the expectation conditional-maximization algorithm under a clustering or classification paradigm.
Author: Jeffrey L. Andrews, Jaymeson R. Wickins, Nicholas M. Boers, Paul D. McNicholas
Maintainer: Jeffrey L. Andrews <jeff.andrews@ubc.ca>

Diff between teigen versions 2.1.1 dated 2016-09-11 and 2.2.0 dated 2016-12-07

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Package survminer updated to version 0.2.3 with previous version 0.2.2 dated 2016-07-28

Title: Drawing Survival Curves using 'ggplot2'
Description: Contains the function 'ggsurvplot()' for drawing easily beautiful and 'ready-to-publish' survival curves with the 'number at risk' table. Other functions are also available for visual examinations of 'cox' model assumptions.
Author: Alboukadel Kassambara [aut, cre], Marcin Kosinski [aut]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>

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Package spocc updated to version 0.6.0 with previous version 0.5.4 dated 2016-10-08

Title: Interface to Species Occurrence Data Sources
Description: A programmatic interface to many species occurrence data sources, including Global Biodiversity Information Facility ('GBIF'), 'USGSs' Biodiversity Information Serving Our Nation ('BISON'), 'iNaturalist', Berkeley 'Ecoinformatics' Engine, 'eBird', 'AntWeb', Integrated Digitized 'Biocollections' ('iDigBio'), 'VertNet', Ocean 'Biogeographic' Information System ('OBIS'), and Atlas of Living Australia ('ALA'). Includes functionality for retrieving species occurrence data, and combining those data.
Author: Scott Chamberlain [aut, cre], Karthik Ram [ctb], Ted Hart [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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Package regsem updated to version 0.4.5 with previous version 0.4.3 dated 2016-11-15

Title: Performs Regularization on Structural Equation Models
Description: Uses both ridge and lasso penalties (and extensions) to penalize specific parameters in structural equation models. The package offers additional cost functions, cross validation, and other extensions beyond traditional SEM.
Author: Ross Jacobucci[aut,cre], Kevin J. Grimm [ctb]
Maintainer: Ross Jacobucci <rcjacobuc@gmail.com>

Diff between regsem versions 0.4.3 dated 2016-11-15 and 0.4.5 dated 2016-12-07

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Package red updated to version 0.2.0 with previous version 0.1.2 dated 2016-10-12

Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction risk of species according to the IUCN (International Union for Conservation of Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>

Diff between red versions 0.1.2 dated 2016-10-12 and 0.2.0 dated 2016-12-07

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New package rclimateca with initial version 0.1
Package: rclimateca
Type: Package
Title: Fetch Climate Data from Environment Canada
Version: 0.1
Date: 2016-12-05
Author: Dewey Dunnington <dewey@fishandwhistle.net>
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Description: The Environment Canada climate archives <http://climate.weather.gc.ca/> are an important source of data for climate researchers in Canada and world wide. The repository contains temperature, precipitation, and wind data for more than 8,000 locations. The functions in this package simplify the process of downloading, subsetting, and manipulating these data for the purposes of more efficient workflows in climate research.
License: GPL-3
Depends: R (>= 2.10)
Imports: digest, httr, prettymapr, reshape2, lubridate
Suggests: ggplot2
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-06 21:53:18 UTC; dewey
Repository: CRAN
Date/Publication: 2016-12-07 08:43:50

More information about rclimateca at CRAN
Permanent link

Package R2admb updated to version 0.7.15 with previous version 0.7.13 dated 2015-04-13

Title: 'ADMB' to R Interface Functions
Description: A series of functions to call 'AD Model Builder' (i.e., compile and run models) from within R, read the results back into R as 'admb' objects, and provide standard accessors (i.e. coef(), vcov(), etc.)
Author: Ben Bolker, Hans Skaug, Jeff Laake
Maintainer: Ben Bolker <bolker@mcmaster.ca>

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Package preseqR updated to version 3.0.0 with previous version 2.0.1.1 dated 2016-07-12

Title: Predicting the Number of Species in a Random Sample
Description: Estimating the number of species represented at least r times in a random sample.
Author: Chao Deng, Timothy Daley and Andrew D. Smith
Maintainer: Chao Deng <chaodeng@usc.edu>

Diff between preseqR versions 2.0.1.1 dated 2016-07-12 and 3.0.0 dated 2016-12-07

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Package originr updated to version 0.2.0 with previous version 0.1.0 dated 2016-05-06

Title: Fetch Species Origin Data from the Web
Description: Get species origin data (whether species is native/invasive) from the following sources on the web: Encyclopedia of Life (<http://eol.org>), Flora 'Europaea' (<http://rbg-web2.rbge.org.uk/FE/fe.html>), Global Invasive Species Database (<http://www.iucngisd.org/gisd>), the Native Species Resolver (<http://bien.nceas.ucsb.edu/bien/tools/nsr/nsr-ws/>), Integrated Taxonomic Information Service (<http://www.itis.gov/>), and Global Register of Introduced and Invasive Species (<http://www.griis.org/>).
Author: Scott Chamberlain [aut, cre], Ignasi Bartomeus [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between originr versions 0.1.0 dated 2016-05-06 and 0.2.0 dated 2016-12-07

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Package MultivariateRandomForest updated to version 1.1.2 with previous version 1.1.1 dated 2016-10-23

Title: Models Multivariate Cases Using Random Forests
Description: Models and predicts Multiple Features in single random forest considering the linear relation among the features.
Author: Raziur Rahman
Maintainer: Raziur Rahman <razeeebuet@gmail.com>

Diff between MultivariateRandomForest versions 1.1.1 dated 2016-10-23 and 1.1.2 dated 2016-12-07

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New package gnlm with initial version 1.1.0
Package: gnlm
Version: 1.1.0
Title: Generalized Nonlinear Regression Models
Authors@R: c( person("Bruce", "Swihart", email="bruce.swihart@gmail.com", role=c("cre", "aut")), person("Jim" , "Lindsey", email="jlindsey@gen.unimaas.nl", role="aut", comment="Jim created this package, Bruce is maintaining the CRAN version") )
Depends: R (>= 1.4), rmutil
Description: A variety of functions to fit linear and nonlinear regression with a large selection of distributions.
License: GPL (>= 2)
URL: http://www.commanster.eu/rcode.html
BugReports: https:/github.com/swihart/gnlm/issues
Encoding: UTF-8
LazyData: true
LazyLoad: true
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-12-06 20:14:05 UTC; swihartbj
Author: Bruce Swihart [cre, aut], Jim Lindsey [aut] (Jim created this package, Bruce is maintaining the CRAN version)
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-07 08:43:43

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Package gcKrig updated to version 1.0.1 with previous version 1.0.0 dated 2016-11-10

Title: Analyze and Interpolate Geostatistical Count Data using Gaussian Copula
Description: Provides a variety of functions to analyze and model geostatistical count data with Gaussian copulas, including 1) data simulation and visualization; 2) correlation structure assessment (here also known as the NORTA); 3) calculate multivariate normal rectangle probabilities; 4) likelihood inference and parallel prediction at unsampled locations.
Author: Zifei Han
Maintainer: Zifei Han <hanzifei1@gmail.com>

Diff between gcKrig versions 1.0.0 dated 2016-11-10 and 1.0.1 dated 2016-12-07

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Package DCM updated to version 0.1.1 with previous version 0.1.0 dated 2016-12-04

Title: Data Converter Module
Description: Data Converter Module (DCM) converts the dataset format from split into stack and to the reverse.
Author: Delphi Intelligence
Maintainer: Nery Sofia Huerta-Pacheco <nehuerta@uv.mx>

Diff between DCM versions 0.1.0 dated 2016-12-04 and 0.1.1 dated 2016-12-07

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Package clickR updated to version 0.1.12 with previous version 0.1.8 dated 2016-11-21

Title: Fix Data and Create Report Tables from Different Objects
Description: Fixes data errors in numerical, factor and date variables and performs report tables from models and summaries.
Author: Victoria Fornes Ferrer, David Hervas Marin
Maintainer: David Hervas Marin <ddhervas@yahoo.es>

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Package cdcfluview updated to version 0.5.1 with previous version 0.4.0 dated 2015-08-09

Title: Retrieve U.S. Flu Season Data from the CDC FluView Portal
Description: The U.S. Centers for Disease Control (CDC) maintains a portal <http://gis.cdc.gov/grasp/fluview/fluportaldashboard.html> for accessing state, regional and national influenza statistics as well as Mortality Surveillance Data. The Flash interface makes it difficult and time-consuming to select and retrieve influenza data. This package provides functions to access the data provided by the portal's underlying API.
Author: Bob Rudis (bob@rud.is)
Maintainer: Bob Rudis <bob@rud.is>

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More information about cdcfluview at CRAN
Permanent link

Tue, 06 Dec 2016

New package shadow with initial version 0.1.3
Package: shadow
Type: Package
Title: R Package for Geometric Shade Calculations
Version: 0.1.3
Authors@R: c( person("Michael", "Dorman", email = "dorman@post.bgu.ac.il", role = c("aut", "cre")), person("Evyatar", "Erell", email = "erell@bgu.ac.il", role = c("ctb")), person("Itai", "Kloog", email = "ikloog@gmail.com", role = c("ctb")), person("Adi", "Vulkan", email = "vulkan@post.bgu.ac.il", role = c("ctb")))
Description: Functions for calculating (1) shade height at a single point, (2) shaded proportion of a building facade; (3) a polygonal layer of shade footprints on the ground; and (4) Sky View Factor value at a single point. Typical inputs include a polygonal layer of buildings outline along with the height of each building, sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: converting polygons to line segments, finding segment azimuth, shifting segments by azimuth and distance, and constructing the footprint of a line of sight between an observer and the sun.
License: MIT + file LICENSE
LazyData: TRUE
Imports: rgeos (>= 0.3), raster (>= 2.4-15), Rcpp (>= 0.12.5), methods
Depends: R (>= 3.2.3), sp (>= 1.1.1)
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown, bookdown, maptools (>= 0.8), testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-06 16:18:00 UTC; michael
Author: Michael Dorman [aut, cre], Evyatar Erell [ctb], Itai Kloog [ctb], Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Repository: CRAN
Date/Publication: 2016-12-07 02:36:08

More information about shadow at CRAN
Permanent link

New package event with initial version 1.1.0
Package: event
Version: 1.1.0
Title: Event History Procedures and Models
Authors@R: c( person("Bruce", "Swihart", email="bruce.swihart@gmail.com", role=c("cre", "aut")), person("Jim" , "Lindsey", email="jlindsey@gen.unimaas.nl", role="aut", comment="Jim created this package, Bruce is maintaining the CRAN version"))
Depends: R (>= 1.4), rmutil
Description: Functions for setting up and analyzing event history data.
License: GPL-2
URL: http://www.commanster.eu/rcode.html
BugReports: https:/github.com/swihart/event/issues
Encoding: UTF-8
LazyData: true
LazyLoad: true
NeedsCompilation: yes
Packaged: 2016-12-06 19:30:06 UTC; swihartbj
Author: Bruce Swihart [cre, aut], Jim Lindsey [aut] (Jim created this package, Bruce is maintaining the CRAN version)
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-07 02:55:00

More information about event at CRAN
Permanent link

New package cellWise with initial version 1.0.0
Package: cellWise
Type: Package
Version: 1.0.0
Date: 2016-12-06
Title: Analyzing Data with Cellwise Outliers
Authors@R: c( person(given="Jakob",family="Raymaekers", role = c("aut","cre"), email="jakob.raymaekers@kuleuven.be"), person(given="Peter",family="Rousseeuw", role = c("aut")), person(given="Wannes",family="Van den Bossche", role = c("aut")) )
Depends: R (>= 3.2.0)
Suggests: knitr, robustHD, robustbase, rrcov, MASS
Imports: reshape2, scales, ggplot2, matrixStats, gridExtra
Description: Tools for detecting cellwise outliers and robust methods to analyze data which may contain them.
License: GPL (>= 2)
LazyLoad: yes
Author: Jakob Raymaekers [aut, cre], Peter Rousseeuw [aut], Wannes Van den Bossche [aut]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-06 16:01:54 UTC; JakobR
Repository: CRAN
Date/Publication: 2016-12-07 02:29:23

More information about cellWise at CRAN
Permanent link

Package micropan updated to version 1.1 with previous version 1.0 dated 2014-09-09

Title: Microbial Pan-Genome Analysis
Description: A collection of functions for computations and visualizations of microbial pan-genomes.
Author: Lars Snipen and Kristian Hovde Liland
Maintainer: Lars Snipen <lars.snipen@nmbu.no>

Diff between micropan versions 1.0 dated 2014-09-09 and 1.1 dated 2016-12-06

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More information about micropan at CRAN
Permanent link

Package micromapST updated to version 1.1.0 with previous version 1.0.5 dated 2015-01-21

Title: Linked Micromap Plots for General U. S. Geographic Areas
Description: Provides the users with the ability to quickly create Linked Micromap plots for a collection of geographic areas. Linked Micromaps are visualizations of georeferenced data that link statistical graphics to an organized series of small maps or graphic images. The Help description contains examples of how to use the micromapST function. Contained in this package are border group datasets to support creating micromaps for the 50 U.S. states and District of Columbia (51 areas), the U. S. 20 Seer Registries, the 105 counties in the state of Kansas, the 62 counties of New York, the 24 counties of Maryland, the 29 counties of Utah, the 32 administrative areas in China, the 218 administrative areas in the UK and Ireland (for testing only), the 25 districts in the city of Seoul South Korea, and the 52 counties on the Africa continent. A border group dataset contains the boundaries related to the data level areas, a second layer boundaries, a top or third layer boundary, a parameter list of run options, and a cross indexing table between area names, abbreviations, numeric identification and alias matching strings for the specific geographic area. By specifying a border group, the package create micromaps for any geographic region. The user can create and provide their own border group dataset for any area beyond the areas contained within the package. Copyrighted 2013, 2014, 2015 and 2016 by Carr, Pearson and Pickle.
Author: Jim Pearson <jpearson@statnetconsulting.com> and Dan Carr <dcarr@gmu.edu>, with contributions from Linda Pickle <linda@statnetconsulting.com>.
Maintainer: Jim Pearson <jpearson@statnetconsulting.com>

Diff between micromapST versions 1.0.5 dated 2015-01-21 and 1.1.0 dated 2016-12-06

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More information about micromapST at CRAN
Permanent link

Package icesVocab updated to version 1.1-2 with previous version 1.1-0 dated 2016-12-06

Title: ICES Vocabularies Database Web Services
Description: R interface to access the RECO POX web services of the ICES (International Council for the Exploration of the Sea) Vocabularies database <http://vocab.ices.dk/services/POX.aspx>.
Author: Colin Millar [aut, cre], Arni Magnusson [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>

Diff between icesVocab versions 1.1-0 dated 2016-12-06 and 1.1-2 dated 2016-12-06

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More information about icesVocab at CRAN
Permanent link

Package btergm updated to version 1.8.1 with previous version 1.7.6 dated 2016-06-18

Title: Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
Description: Temporal Exponential Random Graph Models (TERGM) estimated by maximum pseudolikelihood with bootstrapped confidence intervals or Markov Chain Monte Carlo maximum likelihood. Goodness of fit assessment for ERGMs, TERGMs, and SAOMs. Micro-level interpretation of ERGMs and TERGMs.
Author: Philip Leifeld [aut, cre], Skyler J. Cranmer [ctb], Bruce A. Desmarais [ctb]
Maintainer: Philip Leifeld <philip.leifeld@glasgow.ac.uk>

Diff between btergm versions 1.7.6 dated 2016-06-18 and 1.8.1 dated 2016-12-06

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More information about btergm at CRAN
Permanent link

Package marked updated to version 1.1.13 with previous version 1.1.11 dated 2016-03-07

Title: Mark-Recapture Analysis for Survival and Abundance Estimation
Description: Functions for fitting various models to capture-recapture data including fixed and mixed-effects Cormack-Jolly-Seber(CJS) for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. Includes a CJS models that concurrently estimates and corrects for tag loss. Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty.
Author: Jeff Laake <jeff.laake@noaa.gov>, Devin Johnson <devin.johnson@noaa.gov>, Paul Conn <paul.conn@noaa.gov>
Maintainer: Jeff Laake <jefflaake@gmail.com>

Diff between marked versions 1.1.11 dated 2016-03-07 and 1.1.13 dated 2016-12-06

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Package deTestSet updated to version 1.1.3 with previous version 1.1.2 dated 2014-12-03

Title: Testset for Differential Equations
Description: Solvers and testset for stiff and nonstiff differential equations, and differential algebraic equations.
Author: Karline Soetaert [aut, cre], Jeff Cash [aut], Francesca Mazzia [aut], LAPACK authors [cph]
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>

Diff between deTestSet versions 1.1.2 dated 2014-12-03 and 1.1.3 dated 2016-12-06

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Package clustrd updated to version 1.1.0 with previous version 1.0.9 dated 2016-11-10

Title: Methods for Joint Dimension Reduction and Clustering
Description: A class of methods that combine dimension reduction and clustering of continuous or categorical data. For continuous data, the package contains implementations of factorial K-means (Vichi and Kiers 2001; <DOI:10.1016/S0167-9473(00)00064-5>) and reduced K-means (De Soete and Carroll 1994; <DOI:10.1007/978-3-642-51175-2_24>); both methods that combine principal component analysis with K-means clustering. For categorical data, the package provides MCA K-means (Hwang, Dillon and Takane 2006; <DOI:10.1007/s11336-004-1173-x>), i-FCB (Iodice D'Enza and Palumbo 2013, <DOI:10.1007/s00180-012-0329-x>) and Cluster Correspondence Analysis (van de Velden, Iodice D'Enza and Palumbo 2016; <DOI:10.1007/s11336-016-9514-0>), which combine multiple correspondence analysis with K-means.
Author: Alfonso Iodice D'Enza [aut], Angelos Markos [aut, cre], Michel van de Velden [ctb]
Maintainer: Angelos Markos <amarkos@gmail.com>

Diff between clustrd versions 1.0.9 dated 2016-11-10 and 1.1.0 dated 2016-12-06

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Package SPEDInstabR updated to version 1.3 with previous version 1.2 dated 2016-11-04

Title: Estimation of the Relative Importance of Factors Affecting Species Distribution Based on Stability Concept
Description: From output files obtained from the software 'ModestR', the relative contribution of factors to explain species distribution is depicted using several plots. A global geographic raster file for each environmental variable may be also obtained with the mean relative contribution, considering all species present in each raster cell, of the factor to explain species distribution. Finally, for each variable it is also possible to compare the frequencies of any variable obtained in the cells where the species is present with the frequencies of the same variable in the cells of the extent.
Author: Cstor Guisande Gonzlez
Maintainer: Cstor Guisande Gonzlez <castor@uvigo.es>

Diff between SPEDInstabR versions 1.2 dated 2016-11-04 and 1.3 dated 2016-12-06

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Package sdcMicroGUI updated to version 1.4.0 with previous version 1.3.0 dated 2016-08-16

Title: Graphical User Interface for Package sdcMicro
Description: DEPRECATED: A new version of the graphical user interface is available directly in the package sdcMicro via function sdcApp(). A point and click graphical user interface based on top of the 'sdcMicro' package to create anonymized data set. The graphical user interface provides full reproducibility of any result via the script menu in the GUI.
Author: Alexander Kowarik, Matthias Templ, Bernhard Meindl, Francois Fonteneau
Maintainer: Alexander Kowarik <alexander.kowarik@statistik.gv.at>

Diff between sdcMicroGUI versions 1.3.0 dated 2016-08-16 and 1.4.0 dated 2016-12-06

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Package SafeQuant updated to version 2.3.1 with previous version 2.3 dated 2016-10-04

Title: A Toolbox for the Analysis of Proteomics Data
Description: Tools for the statistical analysis and visualization of (relative and absolute) quantitative (LFQ,TMT,HRM) Proteomics data.
Author: Erik Ahrne
Maintainer: Erik Ahrne <erik.ahrne@unibas.ch>

Diff between SafeQuant versions 2.3 dated 2016-10-04 and 2.3.1 dated 2016-12-06

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Package rootSolve updated to version 1.7 with previous version 1.6.6 dated 2015-10-05

Title: Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations
Description: Routines to find the root of nonlinear functions, and to perform steady-state and equilibrium analysis of ordinary differential equations (ODE). Includes routines that: (1) generate gradient and jacobian matrices (full and banded), (2) find roots of non-linear equations by the 'Newton-Raphson' method, (3) estimate steady-state conditions of a system of (differential) equations in full, banded or sparse form, using the 'Newton-Raphson' method, or by dynamically running, (4) solve the steady-state conditions for uni-and multicomponent 1-D, 2-D, and 3-D partial differential equations, that have been converted to ordinary differential equations by numerical differencing (using the method-of-lines approach). Includes fortran code.
Author: Karline Soetaert [aut, cre], yale sparse matrix package authors [cph]
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>

Diff between rootSolve versions 1.6.6 dated 2015-10-05 and 1.7 dated 2016-12-06

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New package icesVocab with initial version 1.1-0
Package: icesVocab
Version: 1.1-0
Date: 2016-12-08
Title: ICES Vocabularies Database Web Services
Authors@R: c(person("Colin", "Millar", role=c("aut","cre"), email="colin.millar@ices.dk"), person("Arni", "Magnusson", role="aut"))
Imports: utils, XML
Suggests: testthat
Description: R interface to access the RECO POX web services of the ICES (International Council for the Exploration of the Sea) Vocabularies database <http://vocab.ices.dk/services/POX.aspx>.
License: GPL (>= 2)
URL: http://vocab.ices.dk/services/POX.aspx
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-06 12:28:24 UTC; colin
Author: Colin Millar [aut, cre], Arni Magnusson [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>
Repository: CRAN
Date/Publication: 2016-12-06 14:04:42

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Package bvpSolve updated to version 1.3.3 with previous version 1.3.2 dated 2015-09-22

Title: Solvers for Boundary Value Problems of Differential Equations
Description: Functions that solve boundary value problems ('BVP') of systems of ordinary differential equations ('ODE') and differential algebraic equations ('DAE'). The functions provide an interface to the FORTRAN functions 'twpbvpC', 'colnew/colsys', and an R-implementation of the shooting method.
Author: Karline Soetaert <karline.soetaert@nioz.nl>, Jeff Cash <j.cash@imperial.ac.uk>, Francesca Mazzia <mazzia@dm.uniba.it>
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>

Diff between bvpSolve versions 1.3.2 dated 2015-09-22 and 1.3.3 dated 2016-12-06

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Package sf updated to version 0.2-6 with previous version 0.2-5 dated 2016-11-24

Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial data, in R.
Author: Edzer Pebesma [aut, cre], Roger Bivand [ctb], Ian Cook [ctb], Tim Keitt [ctb], Michael Sumner [ctb], Robin Lovelace [ctb], Hadley Wickham [ctb], Jeroen Ooms [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

Diff between sf versions 0.2-5 dated 2016-11-24 and 0.2-6 dated 2016-12-06

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Package R.rsp updated to version 0.40.0 with previous version 0.30.0 dated 2016-05-15

Title: Dynamic Generation of Scientific Reports
Description: The RSP markup language makes any text-based document come alive. RSP provides a powerful markup for controlling the content and output of LaTeX, HTML, Markdown, AsciiDoc, Sweave and knitr documents (and more), e.g. 'Today's date is <%=Sys.Date()%>'. Contrary to many other literate programming languages, with RSP it is straightforward to loop over mixtures of code and text sections, e.g. in month-by-month summaries. RSP has also several preprocessing directives for incorporating static and dynamic contents of external files (local or online) among other things. Functions rstring() and rcat() make it easy to process RSP strings, rsource() sources an RSP file as it was an R script, while rfile() compiles it (even online) into its final output format, e.g. rfile('report.tex.rsp') generates 'report.pdf' and rfile('report.md.rsp') generates 'report.html'. RSP is ideal for self-contained scientific reports and R package vignettes. It's easy to use - if you know how to write an R script, you'll be up and running within minutes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between R.rsp versions 0.30.0 dated 2016-05-15 and 0.40.0 dated 2016-12-06

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 R.rsp-0.40.0/R.rsp/man/RspCode.Rd                                                     |    2 
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 R.rsp-0.40.0/R.rsp/man/RspComment.Rd                                                  |    2 
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 R.rsp-0.40.0/R.rsp/man/RspDocument.Rd                                                 |    2 
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 R.rsp-0.40.0/R.rsp/man/rargs.Rd                                                       |    2 
 R.rsp-0.40.0/R.rsp/man/rcode.Rd                                                       |    1 
 R.rsp-0.40.0/R.rsp/man/splitUrl.Rd                                                    |    2 
 R.rsp-0.40.0/R.rsp/tests/rargs.R                                                      |only
 R.rsp-0.40.0/R.rsp/tests/rcat.R                                                       |    4 
 R.rsp-0.40.0/R.rsp/tests/rcode.R                                                      |    3 
 R.rsp-0.40.0/R.rsp/tests/rcompile.R                                                   |    2 
 R.rsp-0.40.0/R.rsp/tests/rfile.R                                                      |    2 
 R.rsp-0.40.0/R.rsp/tests/rsource.R                                                    |    2 
 R.rsp-0.40.0/R.rsp/tests/rstring.R                                                    |    3 
 R.rsp-0.40.0/R.rsp/vignettes/RSP_intro.md.rsp                                         |    8 
 R.rsp-0.40.0/R.rsp/vignettes/RSP_refcard.tex.rsp                                      |    2 
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 103 files changed, 1440 insertions(+), 1210 deletions(-)

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New package robustsae with initial version 0.1.0
Package: robustsae
Type: Package
Title: Robust Bayesian Small Area Estimation
Version: 0.1.0
Date: 2016-12-05
Author: Malay Ghosh, Jiyoun Myung, Fernando Moura
Maintainer: Jiyoun Myung <jiyoun@ufl.edu>
Description: Functions for Robust Bayesian Small Area Estimation.
License: GPL-3
LazyData: true
Depends: R(>= 3.1.0), MCMCpack, coda, lattice, mvtnorm, pscl
NeedsCompilation: yes
Repository: CRAN
Packaged: 2016-12-06 04:41:37 UTC; yongator
Date/Publication: 2016-12-06 07:52:43

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Package rgbif updated to version 0.9.6 with previous version 0.9.5 dated 2016-10-06

Title: Interface to the Global 'Biodiversity' Information Facility 'API'
Description: A programmatic interface to the Web Service methods provided by the Global Biodiversity Information Facility ('GBIF'). 'GBIF' is a database of species occurrence records from sources all over the globe. 'rgbif' includes functions for searching for taxonomic names, retrieving information on data providers, getting species occurrence records, and getting counts of occurrence records.
Author: Scott Chamberlain [aut, cre], Vijay Barve [ctb], Dan Mcglinn [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between rgbif versions 0.9.5 dated 2016-10-06 and 0.9.6 dated 2016-12-06

 DESCRIPTION                        |   10 +++----
 MD5                                |   28 ++++++++++----------
 NEWS.md                            |   17 ++++++++++--
 R/oai-pmh.R                        |   50 +++++++++++++++++++------------------
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 man/occ_search.Rd                  |    6 ++--
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 tests/testthat/test-name_suggest.r |    8 ++---
 tests/testthat/test-oai.R          |   14 ++++++----
 tests/testthat/test-occ_facet.R    |    4 ++
 tests/testthat/test-parsenames.r   |   12 ++++----
 15 files changed, 134 insertions(+), 102 deletions(-)

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New package msaR with initial version 0.1.0
Package: msaR
Title: Multiple Sequence Alignment for R Shiny
Version: 0.1.0
Authors@R: c(person("Benedikt", "Rauscher", email = "b.rauscher@dkfz-heidelberg.de", role = c("aut", "cph")), person('Zachary', 'Charlop-Powers', role=c('cre', 'aut'), email='zach.charlop.powers@gmail.com'))
Description: Visualises multiple sequence alignments dynamically within the Shiny web application framework.
Depends: R (>= 3.2.2)
License: BSL-1.0
Imports: ape, htmlwidgets
Suggests: Biostrings, knitr, rmarkdown
LazyData: true
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-05 23:12:24 UTC; zachpowers
Author: Benedikt Rauscher [aut, cph], Zachary Charlop-Powers [cre, aut]
Maintainer: Zachary Charlop-Powers <zach.charlop.powers@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-06 07:52:40

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Package matrixpls updated to version 1.0.3 with previous version 1.0.2 dated 2016-12-05

Title: Matrix-Based Partial Least Squares Estimation
Description: Partial Least Squares Path Modeling algorithm and related algorithms. The algorithm implementations aim for computational efficiency using matrix algebra and covariance data. The package is designed toward Monte Carlo simulations and includes functions to perform simple Monte Carlo simulations.
Author: Mikko Rönkkö [aut, cre]
Maintainer: Mikko Rönkkö <mikko.ronkko@aalto.fi>

Diff between matrixpls versions 1.0.2 dated 2016-12-05 and 1.0.3 dated 2016-12-06

 DESCRIPTION   |    8 ++++----
 MD5           |    4 ++--
 R/estimator.R |   17 ++++++++++++++---
 3 files changed, 20 insertions(+), 9 deletions(-)

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Package ManlyMix updated to version 0.1.7 with previous version 0.1.3 dated 2016-04-15

Title: Manly Mixture Modeling and Model-Based Clustering
Description: The utility of this package includes finite mixture modeling and model-based clustering through Manly mixture models by Zhu and Melnykov (2016) <DOI:10.1016/j.csda.2016.01.015>. It also provides capabilities for forward and backward model selection procedures.
Author: Xuwen Zhu [aut, cre], Volodymyr Melnykov [aut], Michael Hutt [ctb, cph] (NM optimization in c), Stephen Moshier [ctb, cph] (eigen calculations in c), Rouben Rostamian [ctb, cph] (memory allocation in c)
Maintainer: Xuwen Zhu <xuwen.zhu@louisville.edu>

Diff between ManlyMix versions 0.1.3 dated 2016-04-15 and 0.1.7 dated 2016-12-06

 DESCRIPTION             |   14 ++++----
 MD5                     |   26 ++++++++--------
 NAMESPACE               |    4 +-
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 man/bankruptcy.Rd       |    2 -
 15 files changed, 141 insertions(+), 31 deletions(-)

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New package intrval with initial version 0.1-0
Package: intrval
Type: Package
Title: Relational Operators for Intervals
Version: 0.1-0
Date: 2016-12-05
Author: Peter Solymos
Maintainer: Peter Solymos <solymos@ualberta.ca>
Description: Evaluating if values of vectors are within different open/closed intervals (`x %[]% c(a, b)`), or if two closed intervals overlap (`c(a1, b1) %[o]% c(a2, b2)`). Operators for negation and directional relations also implemented.
License: GPL-2
URL: https://github.com/psolymos/intrval
BugReports: https://github.com/psolymos/intrval/issues
LazyLoad: yes
LazyData: true
NeedsCompilation: no
Packaged: 2016-12-06 02:02:49 UTC; root
Repository: CRAN
Date/Publication: 2016-12-06 07:52:35

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Package Branching updated to version 0.9.4 with previous version 0.9.2 dated 2016-05-22

Title: Simulation and Estimation for Branching Processes
Description: Simulation and parameter estimation of multitype Bienayme - Galton - Watson processes.
Author: Camilo Jose Torres-Jimenez <cjtorresj@unal.edu.co>
Maintainer: Camilo Jose Torres-Jimenez <cjtorresj@unal.edu.co>

Diff between Branching versions 0.9.2 dated 2016-05-22 and 0.9.4 dated 2016-12-06

 DESCRIPTION  |    8 ++++----
 MD5          |    4 ++--
 src/rBGWM.cc |   24 ++++++++++++------------
 3 files changed, 18 insertions(+), 18 deletions(-)

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Mon, 05 Dec 2016

New package rt3 with initial version 0.1.2
Package: rt3
Type: Package
Title: Tic-Tac-Toe Package for R
Version: 0.1.2
Author: Johan Jordaan
Maintainer: Johan Jordaan <djjordaan@gmail.com>
Description: Play the classic game of tic-tac-toe (naughts and crosses).
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: no
Packaged: 2016-12-05 20:55:21 UTC; johanjordaan
Repository: CRAN
Date/Publication: 2016-12-05 23:43:08

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New package rfordummies with initial version 0.1.3
Package: rfordummies
Title: Code Examples to Accompany the Book "R for Dummies"
Version: 0.1.3
Authors@R: c(person("Andrie", "de Vries", role=c("aut", "cre"), email="apdevries@gmail.com"), person("Joris", "Meys", role = c("aut")))
Description: Contains all the code examples in the book "R for Dummies" (1st edition). You can view the table of contents as well as the sample code for each chapter.
Date: 2016-12-04
URL: http://rfordummies.com
BugReports: https://github.com/andrie/rfordummies/issues
Suggests: fortunes, stringr, sos, XLConnect, reshape2, ggplot2, foreign, lattice
License: GPL-2 | GPL-3
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-04 21:52:54 UTC; adevries
Author: Andrie de Vries [aut, cre], Joris Meys [aut]
Maintainer: Andrie de Vries <apdevries@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-05 23:39:53

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Package colourpicker updated to version 0.3 with previous version 0.2 dated 2016-09-07

Title: A Colour Picker Tool for Shiny and for Selecting Colours in Plots
Description: A colour picker that can be used as an input in Shiny apps or 'Rmarkdown' documents. A Plot Colour Helper tool is available as an 'RStudio' addin, which helps you pick colours to use in your plots. A more generic Colour Picker 'RStudio' addin is also provided to let you select colours for use in your R code.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>

Diff between colourpicker versions 0.2 dated 2016-09-07 and 0.3 dated 2016-12-05

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 25 files changed, 442 insertions(+), 89 deletions(-)

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New package xLLiM with initial version 1.0
Package: xLLiM
Type: Package
Title: High Dimensional Locally-Linear Mapping
Version: 1.0
Author: Emeline Perthame (emeline.perthame@inria.fr), Florence Forbes (florence.forbes@inria.fr), Antoine Deleforge (antoine.deleforge@inria.fr)
Maintainer: Emeline Perthame <perthame.emeline@gmail.com>
Description: Provides a tool for non linear mapping (non linear regression) using a mixture of regression model and an inverse regression strategy. The methods include the GLLiM model (see Deleforge et al (2015) <DOI:10.1007/s11222-014-9461-5>) based on Gaussian mixtures and a robust version of GLLiM, named SLLiM (see Perthame et al (2016) <https://hal.archives-ouvertes.fr/hal-01347455>) based on a mixture of Generalized Student distributions.
License: GPL (>= 2)
Depends:
Imports: MASS,abind,corpcor,Matrix
NeedsCompilation: no
Packaged: 2016-12-05 14:11:55 UTC; Emeline
Repository: CRAN
Date/Publication: 2016-12-05 22:56:08

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Package umx updated to version 1.4.9 with previous version 1.4.5 dated 2016-11-08

Title: Structural Equation Modelling in R with 'OpenMx'
Description: Create, run, and report structural equation and twin models quickly. If you're just starting out, try typing '?umx'.
Author: Timothy C Bates [aut, cre]
Maintainer: Timothy C Bates <timothy.c.bates@gmail.com>

Diff between umx versions 1.4.5 dated 2016-11-08 and 1.4.9 dated 2016-12-05

 DESCRIPTION                      |    8 +--
 MD5                              |   80 +++++++++++++++++++--------------------
 NEWS                             |    6 ++
 R/build_run_modify.r             |   44 ++++++++++-----------
 R/misc_and_utility.r             |   67 ++++++++++++++++----------------
 man/loadings.MxModel.Rd          |    9 ++--
 man/mxSE.Rd                      |    9 ++--
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 man/umxACE.Rd                    |    2 
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 man/umxValues.Rd                 |    2 
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 man/umx_make_TwinData.Rd         |   19 +++++----
 man/umx_make_fake_data.Rd        |   22 ++++------
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 man/umx_show.Rd                  |    7 +--
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 41 files changed, 202 insertions(+), 193 deletions(-)

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New package tswge with initial version 1.0.0
Package: tswge
Type: Package
Title: Applied Time Series Analysis
Version: 1.0.0
Date: 2016-12-4
Author: Wayne Woodward
Maintainer: Wayne Woodward <waynew@smu.edu>
Description: Accompanies the text Applied Time Series Analysis with R, 2nd edition by Woodward, Gray, and Elliott. It is helpful for data analysis and for time series instruction.
Imports: signal,PolynomF,MASS,waveslim,astsa
License: GPL-2
NeedsCompilation: no
Packaged: 2016-12-05 16:52:39 UTC; 00013961
Repository: CRAN
Date/Publication: 2016-12-05 22:59:11

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Package phytools updated to version 0.5-64 with previous version 0.5-38 dated 2016-06-24

Title: Phylogenetic Tools for Comparative Biology (and Other Things)
Description: Package contains various functions for phylogenetic analysis. This functionality is concentrated in the phylogenetic analysis of comparative data from species. For example, the package includes functions for Bayesian and ML ancestral state estimation; visual simulation of trait evolution; fitting models of trait evolution with multiple Brownian rates and correlations; visualizing discrete and continuous character evolution using colors or projections into trait space; identifying the location of a change in the rate of character evolution on the tree; fast Brownian motion simulation and simulation under several other models of continuous trait evolution; fitting a model of correlated binary trait evolution; locating the position of a fossil or an recently extinct lineage on a tree using continuous character data with ML; plotting lineage accumulation through time, including across multiple trees (such as a Bayesian posterior sample); conducting an analysis called stochastic character mapping, in which character histories for a discrete trait are sampled from their posterior probability distribution under a model; conducting a multiple (i.e., partial) Mantel test; fitting a phylogenetic regression model with error in predictor and response variables; conducting a phylogenetic principal components analysis, a phylogenetic regression, a reduced major axis regression, a phylogenetic canonical correlation analysis, and a phylogenetic ANOVA; projecting a tree onto a geographic map; simulating discrete character histories on the tree; fitting a model in which a discrete character evolves under the threshold model; visualization of cospeciation; a simple statistical test for cospeciation between two trees. In addition to this phylogenetic comparative method functionality, the package also contains functions for a wide range of other purposes in phylogenetic biology. For instance, functionality in this package includes (but is not restricted to): adding taxa to a tree (including randomly, everywhere, or automatically to genera); generating all bi- and multi-furcating trees for a set of taxa; reducing a phylogeny to its backbone tree; dropping tips or adding tips to special types of phylogenetic trees; exporting a tree as an XML file; converting a tree with a mapped character to a tree with singleton nodes and one character state per edge; estimating a phylogeny using the least squares method; simulating birth-death trees under a range of conditions; rerooting trees; computing a consensus tree under multiple methods, including via minimization of the distance to other trees in the set; a wide range of visualizations of trees; and a variety of other manipulations and analyses that phylogenetic biologists may find useful for their research.
Author: Liam J. Revell
Maintainer: Liam J. Revell <liam.revell@umb.edu>

Diff between phytools versions 0.5-38 dated 2016-06-24 and 0.5-64 dated 2016-12-05

 DESCRIPTION               |   35 +++---
 MD5                       |   55 +++++-----
 NAMESPACE                 |   48 ++++++--
 R/anc.ML.R                |   54 ++++++++-
 R/backbonePhylo.R         |   87 ++++++++++++---
 R/collapseTree.R          |   38 +++---
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 R/phylo.to.map.R          |   18 ++-
 R/plotBranchbyTrait.R     |   51 +++++++--
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 32 files changed, 1093 insertions(+), 245 deletions(-)

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Package paco updated to version 0.3.1 with previous version 0.3.0 dated 2016-10-03

Title: Procrustes Application to Cophylogenetic Analysis
Description: Procrustes analyses to infer co-phylogenetic matching between pairs of (ultrametric) phylogenetic trees.
Author: Juan Antonio Balbuena <j.a.balbuena@uv.es>, Timothee Poisot <tim@poisotlab.io>, Matthew Hutchinson <matthewhutchinson15@gmail.com>, Fernando Cagua <fernando@cagua.co>
Maintainer: Matthew Hutchinson <matthewhutchinson15@gmail.com>

Diff between paco versions 0.3.0 dated 2016-10-03 and 0.3.1 dated 2016-12-05

 DESCRIPTION   |   10 +++++-----
 MD5           |    4 ++--
 R/coordpcoa.r |   24 ++++++++++++------------
 3 files changed, 19 insertions(+), 19 deletions(-)

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Package nucim updated to version 1.0.0 with previous version 0.5.3 dated 2016-10-15

Title: Nucleome Imaging Toolbox
Description: Tools for 4D nucleome imaging. Quantitative analysis of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy.
Author: Volker Schmid [aut, cre]
Maintainer: Volker Schmid <stats@volkerschmid.de>

Diff between nucim versions 0.5.3 dated 2016-10-15 and 1.0.0 dated 2016-12-05

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New package melviewr with initial version 0.0.1
Package: melviewr
Type: Package
Title: View and Classify MELODIC Output for ICA+FIX
Version: 0.0.1
Authors@R: person("Andrew", "Poppe", email = "Poppe076@gmail.com", role = c("aut", "cre"))
Description: Provides a graphical interface that allows the user to easily view and classify output from 'MELODIC', a part of the 'FSL' neuroimaging analysis software suite that performs independent component analysis (ICA; see <https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/MELODIC/> for more information). The user categorizes a component as signal or noise based on its spatial and temporal characteristics and can then save a text file of these classifications in the format required by 'ICA+FIX', an automatic noise removal tool (<https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX>).
URL: https://github.com/AndrewPoppe/melviewr
BugReports: https://github.com/AndrewPoppe/melviewr/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: gtools, RColorBrewer, RNifti, grDevices, RGtk2, cairoDevice, methods, jsonlite
Depends: gWidgetsRGtk2, gWidgets
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-05 21:47:54 UTC; poppe076
Author: Andrew Poppe [aut, cre]
Maintainer: Andrew Poppe <Poppe076@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-05 23:02:45

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Package mctest updated to version 1.1 with previous version 1.0 dated 2016-06-29

Title: Multicollinearity Diagnostic Measures
Description: Package computes popular and widely used multicollinearity diagnostic measures. Package also indicates which regressors may be the reason of collinearity among regressors.
Author: Muhammad Imdadullah and Dr. Muhammad Aslam
Maintainer: Muhammad Imdadullah <mimdadasad@gmail.com>

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Package matrixpls updated to version 1.0.2 with previous version 1.0.1 dated 2016-06-18

Title: Matrix-Based Partial Least Squares Estimation
Description: Partial Least Squares Path Modeling algorithm and related algorithms. The algorithm implementations aim for computational efficiency using matrix algebra and covariance data. The package is designed toward Monte Carlo simulations and includes functions to perform simple Monte Carlo simulations.
Author: Mikko Rönkkö [aut, cre]
Maintainer: Mikko Rönkkö <mikko.ronkko@aalto.fi>

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Package ggparallel updated to version 0.2.0 with previous version 0.1.2 dated 2015-08-21

Title: Variations of Parallel Coordinate Plots for Categorical Data
Description: Create hammock plots, parallel sets, and common angle plots with 'ggplot2'.
Author: Heike Hofmann [aut, cre], Marie Vendettuoli [aut]
Maintainer: Heike Hofmann <hofmann@mail.iastate.edu>

Diff between ggparallel versions 0.1.2 dated 2015-08-21 and 0.2.0 dated 2016-12-05

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Package GetHFData updated to version 1.2.2 with previous version 1.2.1 dated 2016-11-07

Title: Download and Aggregate High Frequency Trading Data from Bovespa
Description: Downloads and aggregates high frequency trading data for Brazilian instruments directly from Bovespa ftp site <ftp://ftp.bmf.com.br/MarketData/>.
Author: Marcelo Perlin [aut, cre], Henrique Ramos [ctb]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>

Diff between GetHFData versions 1.2.1 dated 2016-11-07 and 1.2.2 dated 2016-12-05

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Package geeM updated to version 0.10.0 with previous version 0.9.0 dated 2016-06-17

Title: Solve Generalized Estimating Equations
Description: GEE estimation of the parameters in mean structures with possible correlation between the outcomes. User-specified mean link and variance functions are allowed, along with observation weighting. The "M" in the name "geeM" is meant to emphasize the use of the Matrix package, which allows for an implementation based fully in R.
Author: Lee McDaniel [aut, cre], Nick Henderson [aut], Melanie Prague [ctb] (Suggested code to fix weighting)
Maintainer: Lee McDaniel <lmcda4@lsuhsc.edu>

Diff between geeM versions 0.9.0 dated 2016-06-17 and 0.10.0 dated 2016-12-05

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New package gafit with initial version 0.5.1
Package: gafit
Version: 0.5.1
Date: 2016-12-05
Title: Genetic Algorithm for Curve Fitting
Author: Telford Tendys <gafit@lnx-bsp.net>
Maintainer: Telford Tendys <gafit@lnx-bsp.net>
Depends: R (>= 3.0.0)
Description: A group of sample points are evaluated against a user-defined expression, the sample points are lists of parameters with values that may be substituted into that expression. The genetic algorithm attempts to make the result of the expression as low as possible (usually this would be the sum of residuals squared).
License: GPL-2
URL: http://lnx-bsp.net/
Packaged: 2016-12-04 22:24:17 UTC; telford
Repository: CRAN
Date/Publication: 2016-12-05 22:52:27
NeedsCompilation: yes

More information about gafit at CRAN
Permanent link

Package BatchGetSymbols updated to version 1.1 with previous version 1.0 dated 2016-11-06

Title: Downloads and Organizes Financial Data for Multiple Tickers
Description: Makes it easy to download a large number of trade data from Yahoo or Google Finance.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>

Diff between BatchGetSymbols versions 1.0 dated 2016-11-06 and 1.1 dated 2016-12-05

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Package mlt.docreg updated to version 0.1-4 with previous version 0.1-3 dated 2016-12-01

Title: Most Likely Transformations: Documentation and Regression Tests
Description: Additional documentation, a package vignette and regression tests for package mlt.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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New package misreport with initial version 0.1.0
Package: misreport
Title: Statistical Analysis of Misreporting on Sensitive Survey Questions
Description: Enables investigation of the predictors of misreporting on sensitive survey questions through a multivariate list experiment regression method. The method permits researchers to model whether a survey respondent's answer to the sensitive item in a list experiment is different from his or her answer to an analogous direct question.
Authors@R: person("Gregory", "Eady", email = "gregory.eady@gmail.com", role = c("aut", "cre"))
Version: 0.1.0
Depends: R (>= 3.2.0)
Imports: numDeriv (>= 2014.2-1), VGAM (>= 1.0-2), mvtnorm (>= 1.0-5)
Suggests: knitr, rmarkdown
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-05 12:56:39 UTC; gregoryeady
Author: Gregory Eady [aut, cre]
Maintainer: Gregory Eady <gregory.eady@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-05 14:49:26

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Package IHSEP updated to version 0.1 with previous version 0.0 dated 2016-08-18

Title: Inhomogeneous Self-Exciting Process
Description: Simulate an inhomogeneous self-exciting process (IHSEP), or Hawkes process, with a given (possibly time-varying) baseline intensity and an excitation function. Calculate the likelihood of an IHSEP with given baseline intensity and excitation functions for an (increasing) sequence of event times. Calculate the point process residuals (integral transforms of the original event times). Calculate the mean intensity process.
Author: Feng Chen <feng.chen@unsw.edu.au>
Maintainer: Feng Chen <feng.chen@unsw.edu.au>

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Package ggpubr updated to version 0.1.1 with previous version 0.1.0 dated 2016-07-20

Title: 'ggplot2' Based Publication Ready Plots
Description: 'ggplot2' is an excellent and flexible package for elegant data visualization in R. However the default generated plots requires some formatting before we can send them for publication. Furthermore, to customize a 'ggplot', the syntax is opaque and this raises the level of difficulty for researchers with no advanced R programming skills. 'ggpubr' provides some easy-to-use functions for creating and customizing 'ggplot2'- based publication ready plots.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>

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Package condSURV updated to version 2.0.0 with previous version 1.0.0 dated 2016-10-29

Title: Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data
Description: Method to implement some newly developed methods for the estimation of the conditional survival function.
Author: Luis Meira-Machado and Marta Sestelo
Maintainer: Marta Sestelo <sestelo@uvigo.es>

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Package Ckmeans.1d.dp updated to version 3.4.6-5 with previous version 3.4.6-4 dated 2016-10-22

Title: Optimal and Fast Univariate k-Means Clustering
Description: A dynamic programming algorithm for optimal univariate k-means clustering. Minimizing the sum of squares of within-cluster distances, the algorithm guarantees optimality and reproducibility. Its advantage over heuristic clustering algorithms in efficiency and accuracy is increasingly pronounced as the number of clusters k increases. With optional weights, the algorithm can also analyze 1-D signals for segmentation and peak calling. An auxiliary function can generate adaptive histograms to make patterns in data stand out. For univariate data analysis, the package provides a powerful alternative to heuristic clustering algorithms.
Author: Joe Song [aut, cre], Haizhou Wang [aut]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>

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New package bridger2 with initial version 0.1.0
Package: bridger2
Title: Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
Version: 0.1.0
Authors@R: person("Naoto", "Imamachi", email = "naoto.imamachi@gmail.com", role = c("aut", "cre"))
Description: BRIC-seq is a genome-wide approach for determining RNA stability in mammalian cells. This package provides a series of functions for performing quality check of your BRIC-seq data, calculation of RNA half-life for each transcript and comparison of RNA half-lives between two conditions.
Depends: R (>= 3.3.1)
Imports: data.table, ggplot2, shiny, shinydashboard, plotly, BSDA, outliers
Suggests: testthat
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-05 11:08:16 UTC; Naoto
Author: Naoto Imamachi [aut, cre]
Maintainer: Naoto Imamachi <naoto.imamachi@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-05 14:49:24

More information about bridger2 at CRAN
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New package bannerCommenter with initial version 0.1.0
Package: bannerCommenter
Type: Package
Title: Make Banner Comments with a Consistent Format
Version: 0.1.0
Author: Bill Venables <Bill.Venables@gmail.com>
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Description: A convenience package for use while drafting code. It facilitates making stand-out comment lines decorated with bands of characters. The input text strings are converted into R comment lines, suitably formatted. These are then displayed in a console window and, if possible, automatically transferred to a clipboard ready for pasting into an R script. Designed to save time when drafting R scripts that will need to be navigated and maintained by other programmers.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown, dplyr, datasets
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-05 12:46:58 UTC; bill
Repository: CRAN
Date/Publication: 2016-12-05 14:49:23

More information about bannerCommenter at CRAN
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Package vdmR updated to version 0.2.3 with previous version 0.2.2 dated 2016-02-27

Title: Visual Data Mining Tools for R
Description: This provides web-based visual data-mining tools by adding interactive functions to 'ggplot2' graphics. Brushing and linking between the multiple plots is one of the main feature of this package. Currently scatter plots, histograms, parallel coordinate plots and choropleth maps are supported.
Author: Tomokazu Fujino
Maintainer: Tomokazu Fujino <fujino@fwu.ac.jp>

Diff between vdmR versions 0.2.2 dated 2016-02-27 and 0.2.3 dated 2016-12-05

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Package summarytools updated to version 0.6.5 with previous version 0.6 dated 2016-11-21

Title: Dataframe Summaries, Frequency Tables and Descriptive Stats with Various Output Formats
Description: Built around three key functions: 1) freq() generates frequency tables reporting counts and proportions (including cumulative) for factors and other discrete data; 2) descr() gives all common central tendency statistics and measures of dispersion for numerical data; 3) dfSummary() gives as much information as possible on a dataframe's columns in a legible table. freq() and descr() support weights, and all three functions support 'Hmisc' or 'pander' labels. A variety of output formats are available (plain text, 'rmarkdown' and HTML). An additional misc function, what.is(), displays all common properties of an object (its class, type, mode, attributes, etc.) and extends the base is() function, checking the object against most is.() functions.
Author: Dominic Comtois
Maintainer: Dominic Comtois <dominic.comtois@gmail.com>

Diff between summarytools versions 0.6 dated 2016-11-21 and 0.6.5 dated 2016-12-05

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Package sudokuAlt updated to version 0.1-9 with previous version 0.1-7 dated 2016-07-04

Title: Tools for Making and Spoiling Sudoku Games
Description: Tools for making, retrieving, displaying and solving sudoku games. This package is an alternative to the earlier sudoku-solver package, 'sudoku'. The present package uses a slightly different algorithm, has a simpler coding and presents a few more sugar tools, such as plot and print methods. Solved sudoku games are of some interest in Experimental Design as examples of Latin Square designs with additional balance constraints.
Author: Bill Venables <Bill.Venables@gmail.com>
Maintainer: Bill Venables <Bill.Venables@gmail.com>

Diff between sudokuAlt versions 0.1-7 dated 2016-07-04 and 0.1-9 dated 2016-12-05

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New package stringformattr with initial version 0.1.0
Package: stringformattr
Type: Package
Title: Dynamic String Formatting
Version: 0.1.0
Author: Alexander Hoyle
Maintainer: Alexander <ahoyle@wesleyan.edu>
Description: Pass named and unnamed character vectors into specified positions in strings. This represents an attempt to replicate some of python's string formatting.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
Imports: stringr
NeedsCompilation: no
Packaged: 2016-12-04 17:47:19 UTC; Alexander Hoyle
Repository: CRAN
Date/Publication: 2016-12-05 08:27:44

More information about stringformattr at CRAN
Permanent link

Package popprxl updated to version 0.1.3 with previous version 0.1.2 dated 2016-05-25

Title: Read GenAlEx Files Directly from Excel
Description: GenAlEx is a popular Excel macro for genetic analysis and the 'poppr' R package allows import of GenAlEx formatted CSV data for genetic data analysis in R. This package allows for the import of GenAlEx formatted Excel files, serving as a small 'poppr' add on for those who have trouble or simply do not want to export their data into CSV format.
Author: Zhian N. Kamvar [cre, aut], Niklaus J. Grünwald [ths]
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>

Diff between popprxl versions 0.1.2 dated 2016-05-25 and 0.1.3 dated 2016-12-05

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Package phylocurve updated to version 2.0.7 with previous version 2.0.6 dated 2016-06-15

Title: Phylogenetic Comparative Methods for High-Dimensional Traits
Description: Tools for studying the evolution of high-dimensional traits (morphometric, function-valued, etc.) including ancestral state reconstruction, estimating phylogenetic signal, and assessing correlated trait evolution. Visit http://www.phylocurve.org for more information.
Author: Eric W. Goolsby
Maintainer: Eric W. Goolsby <eric.goolsby.evolution@gmail.com>

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Package pavo updated to version 1.0.0 with previous version 0.5-6 dated 2016-10-20

Title: Perceptual Analysis, Visualization and Organization of Spectral Color Data in R
Description: A cohesive framework for parsing, analyzing and organizing color from spectral data.
Author: Rafael Maia [aut, cre], Chad Eliason [aut], Pierre-Paul Bitton [aut], Thomas White [aut]
Maintainer: Rafael Maia <rm72@zips.uakron.edu>

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Package labstats updated to version 1.0.1 with previous version 1.0 dated 2016-01-14

Title: Data Sets for the Book "Experimental Design for Laboratory Biologists"
Description: Contains data sets to accompany the book: Lazic SE (2016). "Experimental Design for Laboratory Biologists: Maximising Information and Improving Reproducibility". Cambridge University Press.
Author: Stanley E. Lazic
Maintainer: Stanley E. Lazic <stan.lazic@cantab.net>

Diff between labstats versions 1.0 dated 2016-01-14 and 1.0.1 dated 2016-12-05

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Package gld updated to version 2.4.1 with previous version 2.4 dated 2016-09-18

Title: Estimation and Use of the Generalised (Tukey) Lambda Distribution
Description: The generalised lambda distribution, or Tukey lambda distribution, provides a wide variety of shapes with one functional form. This package provides random numbers, quantiles, probabilities, densities and density quantiles for four different parameterisations of the distribution. It provides the density function, distribution function, and Quantile-Quantile plots. It implements a variety of estimation methods for the distribution, including diagnostic plots. Estimation methods include the starship (all 4 parameterisations) and a number of methods for only the FKML parameterisation. These include maximum likelihood, maximum product of spacings, Titterington's method, Moments, L-Moments, Trimmed L-Moments and Distributional Least Absolutes.
Author: Robert King <Robert.King@newcastle.edu.au>, Benjamin Dean <Benjamin.Dean@uon.edu.au>, Sigbert Klinke
Maintainer: Robert King <Robert.King@newcastle.edu.au>

Diff between gld versions 2.4 dated 2016-09-18 and 2.4.1 dated 2016-12-05

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Package FinePop updated to version 1.2.0 with previous version 1.1.1 dated 2016-10-17

Title: Fine-Scale Population Analysis
Description: Statistical tool set for population genetics. The package provides empirical Bayes estimator of Fst, Nei's Gst, Nei & Chesser's Gst, and Weir & Cockerham's theta adapted for pairwise comparison. It also provides interfaces to read and manipulate 'GENEPOP' format data files and allele/haplotype frequency format files.
Author: Reiichiro Nakamichi, Hirohisa Kishino, Shuichi Kitada
Maintainer: Reiichiro Nakamichi <nakamichi@affrc.go.jp>

Diff between FinePop versions 1.1.1 dated 2016-10-17 and 1.2.0 dated 2016-12-05

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Package FAwR updated to version 1.1.1 with previous version 1.1.0 dated 2015-03-24

Title: Functions and Datasets for "Forest Analytics with R"
Description: Provides functions and datasets from the book "Forest Analytics with R".
Author: Andrew Robinson and Jeff Hamann
Maintainer: Andrew Robinson <apro@unimelb.edu.au>

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Package ezec updated to version 1.0.1 with previous version 1.0.0 dated 2016-06-13

Title: Easy Interface to Effective Concentration Calculations
Description: Because fungicide resistance is an important phenotypic trait for fungi and oomycetes, it is necessary to have a standardized method of statistically analyzing the Effective Concentration (EC) values. This package is designed for those who are not terribly familiar with R to be able to analyze and plot an entire set of isolates using the 'drc' package.
Author: Zhian N. Kamvar [cre, aut], Niklaus J. Grunwald [ths, ctb]
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>

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 ezec-1.0.1/ezec/inst/doc/getting_started.html |   16 +++++++---------
 ezec-1.0.1/ezec/vignettes/getting_started.Rmd |    2 +-
 9 files changed, 29 insertions(+), 27 deletions(-)

More information about ezec at CRAN
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Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.