Sun, 24 May 2015

Package showtext updated to version 0.4-2 with previous version 0.4-1 dated 2015-04-27

Title: Using Fonts More Easily in R Graphs
Description: Making it easy to use various types of fonts ('TrueType', 'OpenType', Type 1, web fonts, etc.) in R graphs, and supporting most output formats of R graphics including PNG, PDF and SVG. Text glyphs will be converted into polygons or raster images, hence after the plot has been created, it no longer relies on the font files. No external software such as Ghostscript is needed to use this package.
Author: Yixuan Qiu and authors/contributors of the included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>

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Package MixSim updated to version 1.1-1 with previous version 1.0-9 dated 2013-12-10

Title: Simulating Data to Study Performance of Clustering Algorithms
Description: The utility of this package is in simulating mixtures of Gaussian distributions with different levels of overlap between mixture components. Pairwise overlap, defined as a sum of two misclassification probabilities, measures the degree of interaction between components and can be readily employed to control the clustering complexity of datasets simulated from mixtures. These datasets can then be used for systematic performance investigation of clustering and finite mixture modeling algorithms. Among other capabilities of 'MixSim', there are computing the exact overlap for Gaussian mixtures, simulating Gaussian and non-Gaussian data, simulating outliers and noise variables, calculating various measures of agreement between two partitionings, and constructing parallel distribution plots for the graphical display of finite mixture models.
Author: Volodymyr Melnykov [aut, cre], Wei-Chen Chen [aut], Ranjan Maitra [aut]
Maintainer: Volodymyr Melnykov <vmelnykov@cba.ua.edu>

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Sat, 23 May 2015

Package tigerstats updated to version 0.2-6 with previous version 0.2 dated 2014-12-03

Title: R Functions for Elementary Statistics
Description: A collection of data sets and functions that are useful in the teaching of statistics at an elementary level to students who may have little or no previous experience with the command line. The functions for elementary inferential procedures follow a uniform interface for user input. Some of the functions are instructional applets that can only be run on the R Studio integrated development environment with package 'manipulate' attached. R Studio is freely available (www.rstudio.org), and includes package 'manipulate'. Other instructional applets are Shiny apps that may be run locally. In teaching the package is used alongside of package 'mosaic', 'mosaicData' and 'abd', which are therefore listed as dependencies.
Author: Rebekah Robinson <rrobinson20@humana.com> and Homer White <hwhite0@georgetowncollege.edu>
Maintainer: Homer White <hwhite0@georgetowncollege.edu>

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Package MTurkR updated to version 0.6.5.1 with previous version 0.6 dated 2015-01-07

Title: R Client for the MTurk Requester API
Description: Provides programmatic access to the Amazon Mechanical Turk (MTurk) Requester API.
Author: Thomas J. Leeper [aut, cre], Solomon Messing [ctb], Sean Murphy [ctb], Jonathan Chang [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>

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Package stream updated to version 1.1-3 with previous version 1.1-2 dated 2015-05-22

Title: Infrastructure for Data Stream Mining
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893 and NIH R21HG005912.
Author: Michael Hahsler [aut, cre, cph], Matthew Bolanos [aut, cph], John Forrest [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between stream versions 1.1-2 dated 2015-05-22 and 1.1-3 dated 2015-05-23

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New package restimizeapi with initial version 1.0.0
Package: restimizeapi
Type: Package
Title: Functions for Working with the 'www.estimize.com' Web Services
Version: 1.0.0
Date: 2015-05-23
Author: Thomas P. Fuller <thomas.fuller@coherentlogic.com>
Maintainer: Thomas P. Fuller <thomas.fuller@coherentlogic.com>
Description: Provides the user with functions to develop their trading strategy, uncover actionable trading ideas, and monitor consensus shifts with crowdsourced earnings and economic estimate data directly from <www.estimize.com>. Further information regarding the web services this package invokes can be found at <www.estimize.com/api>.
Depends: R (>= 3.1.3), RCurl, RJSONIO
Suggests: testthat
SystemRequirements:
LazyLoad: yes
License: LGPL-3
Copyright: (C) 2015 Coherent Logic Limited; ALL RIGHTS RESERVED.
URL: http://www.r-project.org, http://coherentlogic.com/middleware-development/r-package-for-the-estimize-com-api?source=cran, https://www.estimize.com?source=cran
Repository: CRAN
Archs: i386, x64
Packaged: 2015-05-22 18:57:15 UTC; thospfuller
NeedsCompilation: no
Date/Publication: 2015-05-23 08:55:19

More information about restimizeapi at CRAN
Permanent link

Package rcbalance updated to version 1.6 with previous version 1.5 dated 2015-05-03

Title: Large, Sparse Optimal Matching with Refined Covariate Balance
Description: Tools for large, sparse optimal matching of treated units and control units in observational studies. Provisions are made for refined covariate balance constraints, which include fine and near-fine balance as special cases. Matches are optimal in the sense that they are computed as solutions to network optimization problems rather than greedy algorithms.
Author: Samuel D. Pimentel
Maintainer: Samuel D. Pimentel <spi@wharton.upenn.edu>

Diff between rcbalance versions 1.5 dated 2015-05-03 and 1.6 dated 2015-05-23

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Package RAM updated to version 1.2.1 with previous version 1.2.0 dated 2014-12-10

Title: R for Amplicon-Sequencing-Based Microbial-Ecology
Description: Characterizing environmental microbiota diversity using amplicon-based next generation sequencing (NGS) data. Functions are developed to manipulate operational taxonomic unit (OTU) table, perform descriptive and inferential statistics, and generate publication-quality plots.
Author: Wen Chen, Joshua Simpson, C. Andre Levesque
Maintainer: Wen Chen <Wen.Chen@agr.gc.ca>

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Package MCMC.qpcr updated to version 1.2 with previous version 1.1.7 dated 2015-04-30

Title: Bayesian Analysis of qRT-PCR Data
Description: Quantitative RT-PCR data are analyzed using generalized linear mixed models based on lognormal-Poisson error distribution, fitted using MCMC. Control genes are not required but can be incorporated as Bayesian priors or, when template abundances correlate with conditions, as trackers of global effects (common to all genes). The package also implements a lognormal model for higher-abundance data and a "classic" model involving multi-gene normalization on a by-sample basis. Several plotting functions are included to extract and visualize results. The detailed tutorial is available here: http://www.bio.utexas.edu/research/matz_lab/matzlab/Methods_files/mcmc.qpcr.tutorial.pdf.
Author: Mikhail V. Matz
Maintainer: Mikhail V. Matz <matz@utexas.edu>

Diff between MCMC.qpcr versions 1.1.7 dated 2015-04-30 and 1.2 dated 2015-05-23

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Package fastR updated to version 0.10 with previous version 0.8-1 dated 2014-08-28

Title: Foundations and Applications of Statistics Using R
Description: Data sets and utilities to accompany "Foundations and Applications of Statistics: an Introduction using R" (R Pruim, published by AMS, 2011), a text covering topics from probability and mathematical statistics at an advanced undergraduate level. R is integrated throughout, and access to all the R code in the book is provided via the snippet function.
Author: Randall Pruim
Maintainer: Randall Pruim <rpruim@calvin.edu>

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Fri, 22 May 2015

Package wikipediatrend updated to version 1.1.1 with previous version 0.2.0 dated 2014-11-07

Title: Public Subject Attention via Wikipedia Page Access Statistics
Description: Public attention is an interesting field of study. The internet not only allows to access information in no time on virtually any subject but via page access statistics gathered by website authors the subject of attention as well can be studied. For the omnipresent Wikipedia those access statistics are made available via 'http://stats.grok.se' a server providing the information as file dumps as well as as web API. This package provides an easy to use, consistent and traffic minimizing approach to make those data accessible within R.
Author: Peter Meissner [aut, cre], R Core team [ctb] ('wp_date()' derived from base package's 'as.Date()')
Maintainer: Peter Meissner <retep.meissner@gmail.com>

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Package stochvol updated to version 1.1.1 with previous version 1.1.0 dated 2015-05-15

Title: Efficient Bayesian Inference for Stochastic Volatility (SV) Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods.
Author: Gregor Kastner [aut, cre]
Maintainer: Gregor Kastner <gregor.kastner@wu.ac.at>

Diff between stochvol versions 1.1.0 dated 2015-05-15 and 1.1.1 dated 2015-05-22

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New package mitml with initial version 0.2-2
Package: mitml
Type: Package
Title: Tools for Multiple Imputation in Multilevel Modeling
Version: 0.2-2
Date: 2015-05-23
Author: Simon Grund [aut,cre], Alexander Robitzsch [aut], Oliver Luedtke [aut]
Maintainer: Simon Grund <grund@ipn.uni-kiel.de>
Imports: pan, haven
Suggests: lme4, nlme, mice
LazyData: true
LazyLoad: true
Description: Provides tools for multiple imputation of missing data in multilevel modeling. Includes a user-friendly interface to the 'pan' package, and several functions for visualization, data management and the analysis of multiply imputed data sets.
License: GPL (>= 2)
Packaged: 2015-05-22 22:08:44 UTC; simon
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-23 01:34:51

More information about mitml at CRAN
Permanent link

Package hsdar updated to version 0.1.5 with previous version 0.1.4 dated 2015-05-21

Title: Manage, Analyse and Simulate Hyperspectral Data in R
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using the leaf reflectance model PROSPECT and the canopy reflectance model PROSAIL.
Author: Lukas W. Lehnert [cre, aut], Hanna Meyer [ctb], Joerg Bendix [ctb]
Maintainer: Lukas W. Lehnert <lukaslehnert@googlemail.com>

Diff between hsdar versions 0.1.4 dated 2015-05-21 and 0.1.5 dated 2015-05-22

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Package ClustMMDD updated to version 1.0.1 with previous version 1.0.0 dated 2015-05-20

Title: Variable Selection in Clustering by Mixture Models for Discrete Data
Description: An implementation of a variable selection procedure in clustering by mixture of multinomial models for discrete data. Genotype data are examples of such data with two unordered observations (alleles) at each locus for diploid individual. The two-fold problem of variable selection and clustering is seen as a model selection problem where competing models are characterized by the number of clusters K, and the subset S of clustering variables. Competing models are compared by penalized maximum likelihood criteria. We considered asymptotic criteria such as Akaike and Bayesian Information criteria, and a family of penalized criteria with penalty function to be data driven calibrated.
Author: Wilson Toussile
Maintainer: Wilson Toussile <wilson.toussile@gmail.com>

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Package TSdata updated to version 2015.4-2 with previous version 2015.4-1 dated 2015-05-01

Title: 'TSdbi' Illustration
Description: Illustrates the various 'TSdbi' packages with a vignette using time series data from several sources. The vignette also illustrates some simple time series manipulation and plotting using packages 'tframe' and 'tfplot'.
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>

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Package testthat updated to version 0.10.0 with previous version 0.9.1 dated 2014-10-01

Title: Unit Testing for R
Description: A unit testing system designed to be fun, flexible and easy to set up.
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package reproducer updated to version 0.1.3 with previous version 0.1.2 dated 2015-01-25

Title: Reproduce Statistical Analyses and Meta-Analyses
Description: The reproducer R package includes data analysis functions and data sets (e.g., related to software defect prediction) to streamline reproducible research in software engineering.
Author: Lech Madeyski [cre, aut], Marian Jureczko [ctb] (Data contributor), Barbara Kitchenham [ctb] (Data contributor)
Maintainer: Lech Madeyski <lech.madeyski@gmail.com>

Diff between reproducer versions 0.1.2 dated 2015-01-25 and 0.1.3 dated 2015-05-22

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Package manifestoR updated to version 1.0-1 with previous version 0.9-12 dated 2015-05-05

Title: Access and Process Data and Documents of the Manifesto Project
Description: Provides access to coded election programmes from the Manifesto Corpus and to the Manifesto Project's Main Dataset. The Manifesto Project (https://manifesto-project.wzb.eu) collects and analyses election programmes across time and space to measure the political preferences of parties. The Manifesto Corpus contains the collected and annotated election programmes in the Corpus format of the package 'tm' to enable easy use of text processing and text mining functionality. Specific functions for scaling of coded political texts are included.
Author: Jirka Lewandowski [aut, cre], Nicolas Merz [aut], Sven Regel [ctb], Pola Lehmann [ctb]
Maintainer: Jirka Lewandowski <jirka.lewandowski@wzb.eu>

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Package kernelFactory updated to version 0.2.1 with previous version 0.2.0 dated 2014-03-23

Title: Kernel Factory: An Ensemble of Kernel Machines
Description: Binary classification based on an ensemble of kernel machines ("Ballings, M. and Van den Poel, D. (2013), Kernel Factory: An Ensemble of Kernel Machines. Expert Systems With Applications, 40(8), 2904-2913"). Kernel factory is an ensemble method where each base classifier (random forest) is fit on the kernel matrix of a subset of the training data.
Author: Michel Ballings, Dirk Van den Poel
Maintainer: Michel Ballings <Michel.Ballings@GMail.com>

Diff between kernelFactory versions 0.2.0 dated 2014-03-23 and 0.2.1 dated 2015-05-22

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New package Gotoh with initial version 0.9
Package: Gotoh
Type: Package
Title: C++ Wrapper for R which Does Alignments using Gotoh Algorithm
Version: 0.9
Date: 2015-05-18
Author: Rafael Nozal Canyadas <rca025@uib.no> , Eivind Valen <eivind.valen@gmail.com>
Maintainer: Rafael Nozal Canyadas <rca025@uib.no>
Description: Implement a Gotoh approach to sequence alignment. The Gotoh algorithm was first published by Osamu Gotoh in 1982; for more information please refer to: <doi:10.1016/0022-2836(82)90398-9> We are using 'Rcpp', which decrease greatly the CPU time with respect other alignment implementations. This was done in an effort to speed up the calculations for the project AmpliCan. The improvement we got compared with 'DECIPHER' is in between 300x and 500x many fold for sequences between 100 to 200 nucleotides, and between 100x and 200x for sequences of between 200 to 300 nucleotides. And up to 1.5x for sequences of size 10.000 nucleotides and beyond. This package contains the minimum files require for it to work. Please download the repository at: https://rafanozal@bitbucket.org/rafanozal/amplican.git to get the a more verbose documentation and script benchmarks.
Depends: R (>= 3.1.1)
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.6)
LinkingTo: Rcpp
Packaged: 2015-05-22 19:21:41 UTC; rafaelc
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-05-22 22:39:20

More information about Gotoh at CRAN
Permanent link

Package curl updated to version 0.7 with previous version 0.6 dated 2015-05-19

Title: A Modern and Flexible Web Client for R
Description: The curl() and curl_download() functions provide highly configurable drop-in replacements for base url() and download.file() with better performance, support for HTTP 2.0, SSL (https://, ftps://), gzip, and other 'libcurl' goodies. The core of the package implements a framework for performing fully customizable requests where data can be processed either in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr' package which builds on this package with HTTP specific tools and logic.
Author: Jeroen Ooms [cre, aut], Hadley Wickham [ctb], RStudio [cph]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

Diff between curl versions 0.6 dated 2015-05-19 and 0.7 dated 2015-05-22

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More information about curl at CRAN
Permanent link

Package spsurvey updated to version 3.0 with previous version 2.6 dated 2013-09-26

Title: Spatial Survey Design and Analysis
Description: This group of functions implements algorithms for design and analysis of probability surveys. The functions are tailored for Generalized Random Tessellation Stratified survey designs.
Author: Tom Kincaid [aut, cre], Tony Olsen [aut], Don Stevens [ctb], Christian Platt [ctb], Denis White [ctb], Richard Remington [ctb]
Maintainer: Tom Kincaid <Kincaid.Tom@epa.gov>

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Package denpro updated to version 0.9.2 with previous version 0.9.1 dated 2013-08-13

Title: Visualization of Multivariate Functions, Sets, and Data
Description: We provide tools to (1) visualize multivariate density functions and density estimates with level set trees, (2) visualize level sets with shape trees, (3) visualize multivariate data with tail trees, (4) visualize scales of multivariate density estimates with mode graphs and branching maps, and (5) visualize anisotropic spread with 2D volume functions and 2D probability content functions. Level set trees visualize mode structure, shape trees visualize shapes of level sets of unimodal densities, and tail trees visualize connected data sets. The kernel estimator is implemented but the package may also be applied for visualizing other density estimates.
Author: Jussi Klemela <jussi.klemela@gmail.com>
Maintainer: Jussi Klemela <jussi.klemela@gmail.com>

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Package dendextendRcpp updated to version 0.6.1 with previous version 0.5.1 dated 2014-03-16

Title: Faster Dendrogram Manipulation using 'Rcpp'
Description: Offers faster manipulation of dendrogram objects in R. A dendrogram object in R is a list structure with attributes in its nodes and leaves. Working with dendrogram objects often require a function to recursively go through all (or most) element in the list object. Naturally, such function are rather slow in R, but can become much faster thanks to 'Rcpp'.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com), Romain Francois [ctb], Dirk Eddelbuettel [ctb], Kevin Ushey [ctb], Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>

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Package VarSelLCM updated to version 1.1 with previous version 1.0 dated 2015-03-19

Title: Variable Selection for Model-Based Clustering using the Integrated Complete-Data Likelihood of a Latent Class Model
Description: Variable Selection for model-based clustering by using a mixture model of Gaussian distributions assuming conditional independence between variables. The algorithm carries out the model selection by optimizing the MICL criterion which has a closed form for such a distribution.
Author: Matthieu Marbac and Mohammed Sedki
Maintainer: Mohammed Sedki <mohammed.sedki@u-psud.fr>

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Package tmle.npvi updated to version 0.10.0 with previous version 0.9.3 dated 2015-02-05

Title: Targeted Learning of a NP Importance of a Continuous Exposure
Description: Targeted minimum loss estimation (TMLE) of a non-parametric variable importance measure of a continuous exposure 'X' on an outcome 'Y', taking baseline covariates 'W' into account.
Author: Antoine Chambaz, Pierre Neuvial
Maintainer: Pierre Neuvial <pierre.neuvial@genopole.cnrs.fr>

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Package seroincidence updated to version 1.0.4 with previous version 1.0.3 dated 2015-04-10

Title: Estimating Infection Rates from Serological Data
Description: Translates antibody levels measured in a (cross-sectional) population sample into an estimate of the frequency with which seroconversions (infections) occur in the sampled population.
Author: Peter Teunis [aut] (Author of the method and original code), Daniel Lewandowski [com, ctb] (Creator of the R package), Chantal Quinten [ctb, cre] (Project manager and the package maintainer)
Maintainer: Chantal Quinten <seroincidence@ecdc.europa.eu>

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Package mvmeta updated to version 0.4.7 with previous version 0.4.5 dated 2014-08-09

Title: Multivariate and Univariate Meta-Analysis and Meta-Regression
Description: Collection of functions to perform fixed and random-effects multivariate and univariate meta-analysis and meta-regression.
Author: Antonio Gasparrini
Maintainer: Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>

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Package mosaic updated to version 0.10.0 with previous version 0.9.2-2 dated 2015-01-06

Title: Project MOSAIC Statistics and Mathematics Teaching Utilities
Description: Data sets and utilities from Project MOSAIC (mosaic-web.org) used to teach mathematics, statistics, computation and modeling. Funded by the NSF, Project MOSAIC is a community of educators working to tie together aspects of quantitative work that students in science, technology, engineering and mathematics will need in their professional lives, but which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel Kaplan <kaplan@macalester.edu>, Nicholas Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>

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 mosaic-0.10.0/mosaic/man/Broyden.Rd                                                  |    3 
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 mosaic-0.10.0/mosaic/man/makeFun.Rd                                                  |    3 
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Package coneproj updated to version 1.6 with previous version 1.5 dated 2014-11-16

Title: Primal or Dual Cone Projections with Routines for Constrained Regression
Description: Routines doing cone projection and quadratic programming, as well as doing estimation and inference for constrained parametric regression and shape-restricted regression problems.
Author: Mary C. Meyer and Xiyue Liao
Maintainer: Xiyue Liao <xiyue@rams.colostate.edu>

Diff between coneproj versions 1.5 dated 2014-11-16 and 1.6 dated 2015-05-22

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Package frbs updated to version 3.1-0 with previous version 3.0-0 dated 2015-01-16

Title: Fuzzy Rule-Based Systems for Classification and Regression Tasks
Description: An implementation of various learning algorithms based on fuzzy rule-based systems (FRBSs) for dealing with classification and regression tasks. Moreover, it allows to construct an FRBS model defined by human experts. FRBSs are based on the concept of fuzzy sets, proposed by Zadeh in 1965, which aims at representing the reasoning of human experts in a set of IF-THEN rules, to handle real-life problems in, e.g., control, prediction and inference, data mining, bioinformatics data processing, and robotics. FRBSs are also known as fuzzy inference systems and fuzzy models. During the modeling of an FRBS, there are two important steps that need to be conducted: structure identification and parameter estimation. Nowadays, there exists a wide variety of algorithms to generate fuzzy IF-THEN rules automatically from numerical data, covering both steps. Approaches that have been used in the past are, e.g., heuristic procedures, neuro-fuzzy techniques, clustering methods, genetic algorithms, squares methods, etc. Furthermore, in this version we provide a universal framework named 'frbsPMML', which is adopted from the Predictive Model Markup Language (PMML), for representing FRBS models. PMML is an XML-based language to provide a standard for describing models produced by data mining and machine learning algorithms. Therefore, we are allowed to export and import an FRBS model to/from 'frbsPMML'. Finally, this package aims to implement the most widely used standard procedures, thus offering a standard package for FRBS modeling to the R community.
Author: Lala Septem Riza, Christoph Bergmeir, Francisco Herrera, and Jose Manuel Benitez
Maintainer: Christoph Bergmeir <c.bergmeir@decsai.ugr.es>

Diff between frbs versions 3.0-0 dated 2015-01-16 and 3.1-0 dated 2015-05-22

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New package dpmr with initial version 0.1.7-1
Package: dpmr
Title: Data Package Manager for R
Description: Create, install, and summarise data packages that follow the Open Knowledge Foundation's Data Package Protocol.
Version: 0.1.7-1
Date: 2015-05-22
Authors@R: c( person("Christopher", "Gandrud", email = "christopher.gandrud@gmail.com", role = c("aut", "cre")) )
URL: http://christophergandrud.github.io/dpmr/
BugReports: https://github.com/christophergandrud/dpmr/issues
License: GPL-3
Imports: digest, httr, jsonlite, magrittr, rio
Suggests: devtools, testthat
NeedsCompilation: no
Packaged: 2015-05-22 10:22:53 UTC; christophergandrud
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Repository: CRAN
Date/Publication: 2015-05-22 13:22:08

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Package streamMOA updated to version 1.1-0 with previous version 1.0-0 dated 2014-12-19

Title: Interface for MOA Stream Clustering Algorithms
Description: Provides an interface for data stream clustering algorithms implemented in the MOA (Massive Online Analysis) framework.
Author: Michael Hahsler [aut, cre, cph], Matthew Bolanos [aut, cph], John Forrest [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between streamMOA versions 1.0-0 dated 2014-12-19 and 1.1-0 dated 2015-05-22

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Package stream updated to version 1.1-2 with previous version 1.1-1 dated 2015-01-16

Title: Infrastructure for Data Stream Mining
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893 and NIH R21HG005912.
Author: Michael Hahsler [aut, cre, cph], Matthew Bolanos [aut, cph], John Forrest [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between stream versions 1.1-1 dated 2015-01-16 and 1.1-2 dated 2015-05-22

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Package oce updated to version 0.9-17 with previous version 0.9-16 dated 2015-05-20

Title: Analysis of Oceanographic Data
Description: Supports the analysis of Oceanographic data, including ADCP measurements, CTD measurements, sectional data, sea-level time series, coastline files, etc. Handles dozens of specialized functions for calculating seawater properties such as potential temperature and density, as well as derived properties such as buoyancy frequency and dynamic height. Map projections are calculated using PROJ.4 functions included within the oce.
Author: Dan Kelley [aut, cre], Clark Richards [aut], Chantelle Layton [ctb, cph] (curl() coauthor), Gerald Evenden [ctb, cph] (PROJ.4 author), Frank Warmerdam [ctb, cph] (PROJ.4 author), Howard Butler [ctb, cph] (PROJ.4 author), Brent Fraser [ctb, cph] (PROJ.4 contributor), Chris Stuber [ctb, cph] (PROJ.4 contributor), Craig Bruce [ctb, cph] (PROJ.4 contributor), Victor Osipkov [ctb, cph] (PROJ.4 contributor), Andrea Antonello [ctb, cph] (PROJ.4 contributor), Charles Karney [ctb, cph] (PROJ.4 contributor), Karsten Engsager [ctb, cph] (PROJ.4 contributor), Knud Poder [ctb, cph] (PROJ.4 contributor), Robert Gentleman [ctb, cph] (author of approx() code, used in binmapAdp()), Ross Ihaka [ctb, cph] (author of approx() code, used in binmapAdp())
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>

Diff between oce versions 0.9-16 dated 2015-05-20 and 0.9-17 dated 2015-05-22

 DESCRIPTION          |    8 ++++----
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Package metafor updated to version 1.9-7 with previous version 1.9-6 dated 2015-05-07

Title: Meta-Analysis Package for R
Description: A comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect sizes or outcome measures, fit fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, L'Abbe, Baujat plots). For meta-analyses of binomial and person-time data, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects (conditional) logistic and Poisson regression models). Finally, the package provides functionality for fitting meta-analytic multivariate/multilevel models that account for non-independent sampling errors and/or true effects (e.g., due to the inclusion of multiple treatment studies, multiple endpoints, or other forms of clustering). Network meta-analyses and meta-analyses accounting for known correlation structures (e.g., due to phylogenetic relatedness) can also be conducted.
Author: Wolfgang Viechtbauer [aut, cre]
Maintainer: Wolfgang Viechtbauer <wvb@metafor-project.org>

Diff between metafor versions 1.9-6 dated 2015-05-07 and 1.9-7 dated 2015-05-22

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 tests/testthat/test_confint.r                              |   32 -
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Package libamtrack updated to version 0.6.1 with previous version 0.6.0 dated 2015-05-21

Title: Computational Routines for Proton and Ion Radiotherapy
Description: R interface to the open-source, ANSI C library libamtrack (http://libamtrack.dkfz.org). libamtrack provides computational routines for the prediction of detector response and radiobiological efficiency in heavy charged particle beams. It is designed for research in proton and ion dosimetry and radiotherapy. libamtrack also provides many auxiliary physics routines for proton and ion beams. Original package and C-to-R conversion routines developed by Felix A. Klein.
Author: Steffen Greilich and the libamtrack team
Maintainer: Steffen Greilich <s.greilich@dkfz.de>

Diff between libamtrack versions 0.6.0 dated 2015-05-21 and 0.6.1 dated 2015-05-22

 DESCRIPTION                                    |   10 -
 MD5                                            |  136 ++++++++++++-------------
 R/initial.R                                    |    2 
 man/AT.A.from.particle.no.Rd                   |    2 
 man/AT.Bethe.mean.energy.loss.MeV.Rd           |    2 
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 man/AT.CSDA.range.Bethe.g.cm2.Rd               |    2 
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 man/AT.E.from.beta.Rd                          |    2 
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 man/AT.nuclear.spin.from.particle.no.Rd        |    2 
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 man/AT.r.RDD.m.Rd                              |    2 
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 man/libamtrack-package.Rd                      |    2 
 src/AT_StoppingPowerDataBethe.c                |    2 
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 69 files changed, 150 insertions(+), 169 deletions(-)

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Package geomorph updated to version 2.1.5 with previous version 2.1.4 dated 2015-04-02

Title: Geometric Morphometric Analyses of 2D/3D Landmark Data
Description: Read, manipulate, and digitize landmark data, generate shape variables via Procrustes analysis for points, curves and surfaces, perform shape analyses, and provide graphical depictions of shapes and patterns of shape variation.
Author: Dean Adams, Michael Collyer, Emma Sherratt
Maintainer: Dean Adams <dcadams@iastate.edu>

Diff between geomorph versions 2.1.4 dated 2015-04-02 and 2.1.5 dated 2015-05-22

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 86 files changed, 697 insertions(+), 1172 deletions(-)

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Package evolqg updated to version 0.1-5 with previous version 0.1-4 dated 2015-05-21

Title: Tools for Evolutionary Quantitative Genetics
Description: Provides functions for covariance matrix comparisons, estimation of repeatabilities in measurements and matrices, and general evolutionary quantitative genetics tools.
Author: Ana Paula Assis, Diogo Melo, Edgar Zanella, Fabio Machado, Guilherme Garcia
Maintainer: Diogo Melo <diogro@usp.br>

Diff between evolqg versions 0.1-4 dated 2015-05-21 and 0.1-5 dated 2015-05-22

 DESCRIPTION          |    6 +++---
 MD5                  |    6 +++---
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Package dataview updated to version 2.1.1 with previous version 2.0-9 dated 2014-04-10

Title: Data and Workspace Browser for Terminals
Description: Tools for deciphering the contents of unknown objects or environments from within the terminal, a problem often encountered when working with unfamiliar packages or debugging complex functions. If working in xterm256 or ANSI terminals the output is coloured by default to improve readability (e.g. the standard Ubuntu terminal).
Author: Christofer Backlin [aut, cre]
Maintainer: Christofer Backlin <christofer.backlin@medsci.uu.se>

Diff between dataview versions 2.0-9 dated 2014-04-10 and 2.1.1 dated 2015-05-22

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Package bcv updated to version 1.0.1 with previous version 1.0 dated 2009-10-15

Title: Cross-Validation for the SVD (Bi-Cross-Validation)
Description: Methods for choosing the rank of an SVD approximation via cross validation. The package provides both Gabriel-style "block" holdouts and Wold-style "speckled" holdouts. It also includes an implementation of the SVDImpute algorithm. For more information about Bi-cross-validation, see Owen & Perry's 2009 AoAS article (at http://arxiv.org/abs/0908.2062) and Perry's 2009 PhD thesis (at http://arxiv.org/abs/0909.3052).
Author: Patrick O. Perry
Maintainer: Patrick O. Perry <pperry@stern.nyu.edu>

Diff between bcv versions 1.0 dated 2009-10-15 and 1.0.1 dated 2015-05-22

 DESCRIPTION               |   29 +++++++++++++++--------------
 LICENSE                   |   33 +++------------------------------
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 NAMESPACE                 |    4 ++++
 R/impute.svd.R            |    2 +-
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 src/bcv-matrix-private.c  |    6 +++---
 src/bcv-partition.c       |    7 +++----
 src/bcv-svd-gabriel-rep.c |   18 +++++++++---------
 src/bcv-svd-gabriel.c     |    8 ++++----
 src/bcv-svd-impute.c      |   18 +++++++++---------
 src/bcv-svd-wold-rep.c    |   10 +++++-----
 src/bcv-svd-wold.c        |    8 ++++----
 13 files changed, 66 insertions(+), 88 deletions(-)

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Package acp updated to version 2.0 with previous version 1.1 dated 2015-01-08

Title: Autoregressive Conditional Poisson
Description: Analysis of count data exhibiting autoregressive properties, using the Autoregressive Conditional Poisson model (ACP(p,q)) proposed by Heinen (2003).
Author: Siakoulis Vasileios
Maintainer: Siakoulis Vasilios <Siakoulis.Vasilios@atticabank.gr>

Diff between acp versions 1.1 dated 2015-01-08 and 2.0 dated 2015-05-22

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 8 files changed, 241 insertions(+), 221 deletions(-)

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Thu, 21 May 2015

Package R0 updated to version 1.2-6 with previous version 1.2-5 dated 2014-11-25

Title: Estimation of R0 and Real-Time Reproduction Number from Epidemics
Description: Estimation of reproduction numbers for disease outbreak, based on incidence data. The R0 package implements several documented methods. It is therefore possible to compare estimations according to the methods used. Depending on the methods requested by user, basic reproduction number (commonly denoted as R0) or real-time reproduction number (referred to as R(t)) is computed, along with a 95% Confidence Interval. Plotting outputs will give different graphs depending on the methods requested : basic reproductive number estimations will only show the epidemic curve (collected data) and an adjusted model, whereas real-time methods will also show the R(t) variations throughout the outbreak time period. Sensitivity analysis tools are also provided, and allow for investigating effects of varying Generation Time distribution or time window on estimates.
Author: Pierre-Yves Boelle, Thomas Obadia
Maintainer: Thomas Obadia <thomas.obadia@iplesp.upmc.fr>

Diff between R0 versions 1.2-5 dated 2014-11-25 and 1.2-6 dated 2015-05-21

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New package pcaBootPlot with initial version 0.1.0
Package: pcaBootPlot
Title: Create 2D Principal Component Plots with Bootstrapping
Version: 0.1.0
Author: Joshua Starmer
Maintainer: Joshua Starmer <starmer@unc.edu>
Description: Draws a 2D principal component plot using the first 2 principal components from the original and bootstrapped data to give some sense of variability.
Depends: R (>= 3.0.2)
License: GPL-2
LazyData: true
Imports: RColorBrewer
Suggests: knitr
VignetteBuilder: knitr
Packaged: 2015-05-21 17:37:16 UTC; jstarmer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-21 20:12:06

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Package meteoForecast updated to version 0.45 with previous version 0.43 dated 2014-10-19

Title: Numerical Weather Predictions
Description: Access to several Numerical Weather Prediction services both in raster format and as a time series for a location. Currenty it works with GFS, MeteoGalicia, NAM, and RAP.
Author: Oscar Perpinan Lamigueiro [cre, aut], Marcelo Pinho Almeida [ctb]
Maintainer: Oscar Perpinan Lamigueiro <oscar.perpinan@gmail.com>

Diff between meteoForecast versions 0.43 dated 2014-10-19 and 0.45 dated 2015-05-21

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Package mapmisc updated to version 1.2.4 with previous version 1.2.1 dated 2015-03-25

Title: Utilities for Producing Maps
Description: A minimal, light-weight set of tools for producing nice looking maps in R.
Author: Patrick Brown <patrick.brown@utoronto.ca> [aut, cre], Barry Rowlingson [ctb]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>

Diff between mapmisc versions 1.2.1 dated 2015-03-25 and 1.2.4 dated 2015-05-21

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Package fslr updated to version 1.4.4 with previous version 1.3 dated 2014-11-03

Title: Wrapper Functions for FSL (FMRIB Software Library) from Functional MRI of the Brain (FMRIB)
Description: Wrapper functions that interface with FSL (http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used neuroimaging software, using system commands. The goal is to be able to interface with FSL completely in R, where you pass R nifti objects and the function executes an FSL command and returns an R nifti object if desired.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between fslr versions 1.3 dated 2014-11-03 and 1.4.4 dated 2015-05-21

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Permanent link

Package evolqg updated to version 0.1-4 with previous version 0.1-3 dated 2015-05-20

Title: Tools for Evolutionary Quantitative Genetics
Description: Provides functions for covariance matrix comparisons, estimation of repeatabilities in measurements and matrices, and general evolutionary quantitative genetics tools.
Author: Ana Paula Assis, Diogo Melo, Edgar Zanella, Fabio Machado, Guilherme Garcia
Maintainer: Diogo Melo <diogro@usp.br>

Diff between evolqg versions 0.1-3 dated 2015-05-20 and 0.1-4 dated 2015-05-21

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More information about evolqg at CRAN
Permanent link

Package BH updated to version 1.58.0-1 with previous version 1.55.0-3 dated 2015-01-05

Title: Boost C++ Header Files
Description: Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN package. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between BH versions 1.55.0-3 dated 2015-01-05 and 1.58.0-1 dated 2015-05-21

 ChangeLog                                                                                      |   17 
 DESCRIPTION                                                                                    |    8 
 MD5                                                                                            | 8087 +++++-----
 README.md                                                                                      |    6 
 inst/NEWS.Rd                                                                                   |    8 
 inst/include/boost/algorithm/algorithm.hpp                                                     |only
 inst/include/boost/algorithm/clamp.hpp                                                         |   40 
 inst/include/boost/algorithm/cxx11/all_of.hpp                                                  |    5 
 inst/include/boost/algorithm/cxx11/any_of.hpp                                                  |    5 
 inst/include/boost/algorithm/cxx11/copy_if.hpp                                                 |    5 
 inst/include/boost/algorithm/cxx11/copy_n.hpp                                                  |    5 
 inst/include/boost/algorithm/cxx11/find_if_not.hpp                                             |    5 
 inst/include/boost/algorithm/cxx11/iota.hpp                                                    |    9 
 inst/include/boost/algorithm/cxx11/is_partitioned.hpp                                          |    5 
 inst/include/boost/algorithm/cxx11/is_permutation.hpp                                          |   65 
 inst/include/boost/algorithm/cxx11/is_sorted.hpp                                               |    6 
 inst/include/boost/algorithm/cxx11/none_of.hpp                                                 |    5 
 inst/include/boost/algorithm/cxx11/partition_copy.hpp                                          |    5 
 inst/include/boost/algorithm/cxx11/partition_point.hpp                                         |    7 
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 inst/include/boost/bimap/set_of.hpp                                                            |    2 
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 inst/include/boost/bimap/tags/tagged.hpp                                                       |    2 
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 inst/include/boost/bimap/views/map_view.hpp                                                    |    2 
 inst/include/boost/bimap/views/set_view.hpp                                                    |    2 
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 inst/include/boost/call_traits.hpp                                                             |    6 
 inst/include/boost/cast.hpp                                                                    |  103 
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 inst/include/boost/circular_buffer_fwd.hpp                                                     |    2 
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 inst/include/boost/concept/detail/msvc.hpp                                                     |    9 
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 inst/include/boost/concept/usage.hpp                                                           |    8 
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 inst/include/boost/config.hpp                                                                  |    4 
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 inst/include/boost/config/compiler/gcc_xml.hpp                                                 |   31 
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 inst/include/boost/config/platform/haiku.hpp                                                   |only
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 inst/include/boost/container/scoped_allocator_fwd.hpp                                          |   59 
 inst/include/boost/container/set.hpp                                                           | 1125 -
 inst/include/boost/container/slist.hpp                                                         |  693 
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 inst/include/boost/container/static_vector.hpp                                                 |  427 
 inst/include/boost/container/string.hpp                                                        |  512 
 inst/include/boost/container/throw_exception.hpp                                               |   66 
 inst/include/boost/container/vector.hpp                                                        | 2049 +-
 inst/include/boost/core                                                                        |only
 inst/include/boost/cstdfloat.hpp                                                               |only
 inst/include/boost/cstdint.hpp                                                                 |    9 
 inst/include/boost/current_function.hpp                                                        |   13 
 inst/include/boost/date_time.hpp                                                               |    2 
 inst/include/boost/date_time/adjust_functors.hpp                                               |    2 
 inst/include/boost/date_time/c_local_time_adjustor.hpp                                         |    7 
 inst/include/boost/date_time/c_time.hpp                                                        |    6 
 inst/include/boost/date_time/compiler_config.hpp                                               |    2 
 inst/include/boost/date_time/constrained_value.hpp                                             |    2 
 inst/include/boost/date_time/date.hpp                                                          |    2 
 inst/include/boost/date_time/date_clock_device.hpp                                             |   14 
 inst/include/boost/date_time/date_defs.hpp                                                     |    2 
 inst/include/boost/date_time/date_duration.hpp                                                 |    2 
 inst/include/boost/date_time/date_duration_types.hpp                                           |    2 
 inst/include/boost/date_time/date_facet.hpp                                                    |    2 
 inst/include/boost/date_time/date_format_simple.hpp                                            |    2 
 inst/include/boost/date_time/date_formatting.hpp                                               |    2 
 inst/include/boost/date_time/date_formatting_limited.hpp                                       |    2 
 inst/include/boost/date_time/date_formatting_locales.hpp                                       |    2 
 inst/include/boost/date_time/date_generator_formatter.hpp                                      |    2 
 inst/include/boost/date_time/date_generator_parser.hpp                                         |    2 
 inst/include/boost/date_time/date_generators.hpp                                               |    2 
 inst/include/boost/date_time/date_iterator.hpp                                                 |    2 
 inst/include/boost/date_time/date_names_put.hpp                                                |    2 
 inst/include/boost/date_time/date_parsing.hpp                                                  |    4 
 inst/include/boost/date_time/dst_rules.hpp                                                     |    2 
 inst/include/boost/date_time/filetime_functions.hpp                                            |    2 
 inst/include/boost/date_time/format_date_parser.hpp                                            |    6 
 inst/include/boost/date_time/gregorian/conversion.hpp                                          |    2 
 inst/include/boost/date_time/gregorian/formatters.hpp                                          |    2 
 inst/include/boost/date_time/gregorian/formatters_limited.hpp                                  |    2 
 inst/include/boost/date_time/gregorian/greg_calendar.hpp                                       |    2 
 inst/include/boost/date_time/gregorian/greg_date.hpp                                           |    2 
 inst/include/boost/date_time/gregorian/greg_day.hpp                                            |    2 
 inst/include/boost/date_time/gregorian/greg_day_of_year.hpp                                    |    2 
 inst/include/boost/date_time/gregorian/greg_duration.hpp                                       |    2 
 inst/include/boost/date_time/gregorian/greg_duration_types.hpp                                 |    2 
 inst/include/boost/date_time/gregorian/greg_facet.hpp                                          |    6 
 inst/include/boost/date_time/gregorian/greg_month.hpp                                          |    2 
 inst/include/boost/date_time/gregorian/greg_serialize.hpp                                      |    2 
 inst/include/boost/date_time/gregorian/greg_weekday.hpp                                        |    2 
 inst/include/boost/date_time/gregorian/greg_year.hpp                                           |    2 
 inst/include/boost/date_time/gregorian/greg_ymd.hpp                                            |    2 
 inst/include/boost/date_time/gregorian/gregorian.hpp                                           |    2 
 inst/include/boost/date_time/gregorian/gregorian_io.hpp                                        |    2 
 inst/include/boost/date_time/gregorian/gregorian_types.hpp                                     |    2 
 inst/include/boost/date_time/gregorian/parsers.hpp                                             |    2 
 inst/include/boost/date_time/gregorian_calendar.hpp                                            |    2 
 inst/include/boost/date_time/gregorian_calendar.ipp                                            |    2 
 inst/include/boost/date_time/int_adapter.hpp                                                   |    2 
 inst/include/boost/date_time/iso_format.hpp                                                    |    2 
 inst/include/boost/date_time/local_time/conversion.hpp                                         |    2 
 inst/include/boost/date_time/local_time/custom_time_zone.hpp                                   |    2 
 inst/include/boost/date_time/local_time/date_duration_operators.hpp                            |    2 
 inst/include/boost/date_time/local_time/dst_transition_day_rules.hpp                           |    2 
 inst/include/boost/date_time/local_time/local_date_time.hpp                                    |    2 
 inst/include/boost/date_time/local_time/local_time.hpp                                         |    2 
 inst/include/boost/date_time/local_time/local_time_io.hpp                                      |    4 
 inst/include/boost/date_time/local_time/local_time_types.hpp                                   |    2 
 inst/include/boost/date_time/local_time/posix_time_zone.hpp                                    |    6 
 inst/include/boost/date_time/local_time/tz_database.hpp                                        |    2 
 inst/include/boost/date_time/local_time_adjustor.hpp                                           |    2 
 inst/include/boost/date_time/local_timezone_defs.hpp                                           |    2 
 inst/include/boost/date_time/locale_config.hpp                                                 |    2 
 inst/include/boost/date_time/microsec_time_clock.hpp                                           |    4 
 inst/include/boost/date_time/parse_format_base.hpp                                             |    2 
 inst/include/boost/date_time/period.hpp                                                        |    2 
 inst/include/boost/date_time/period_formatter.hpp                                              |    2 
 inst/include/boost/date_time/period_parser.hpp                                                 |    2 
 inst/include/boost/date_time/posix_time/conversion.hpp                                         |   10 
 inst/include/boost/date_time/posix_time/date_duration_operators.hpp                            |    2 
 inst/include/boost/date_time/posix_time/posix_time.hpp                                         |    2 
 inst/include/boost/date_time/posix_time/posix_time_config.hpp                                  |    2 
 inst/include/boost/date_time/posix_time/posix_time_duration.hpp                                |    2 
 inst/include/boost/date_time/posix_time/posix_time_io.hpp                                      |    5 
 inst/include/boost/date_time/posix_time/posix_time_legacy_io.hpp                               |    4 
 inst/include/boost/date_time/posix_time/posix_time_system.hpp                                  |    2 
 inst/include/boost/date_time/posix_time/ptime.hpp                                              |    2 
 inst/include/boost/date_time/posix_time/time_formatters.hpp                                    |    2 
 inst/include/boost/date_time/posix_time/time_formatters_limited.hpp                            |    2 
 inst/include/boost/date_time/posix_time/time_parsers.hpp                                       |    2 
 inst/include/boost/date_time/posix_time/time_period.hpp                                        |    2 
 inst/include/boost/date_time/posix_time/time_serialize.hpp                                     |    2 
 inst/include/boost/date_time/special_defs.hpp                                                  |    2 
 inst/include/boost/date_time/special_values_formatter.hpp                                      |    2 
 inst/include/boost/date_time/string_convert.hpp                                                |    3 
 inst/include/boost/date_time/string_parse_tree.hpp                                             |    2 
 inst/include/boost/date_time/strings_from_facet.hpp                                            |    4 
 inst/include/boost/date_time/time.hpp                                                          |    4 
 inst/include/boost/date_time/time_clock.hpp                                                    |    2 
 inst/include/boost/date_time/time_defs.hpp                                                     |    2 
 inst/include/boost/date_time/time_duration.hpp                                                 |    4 
 inst/include/boost/date_time/time_facet.hpp                                                    |    2 
 inst/include/boost/date_time/time_formatting_streams.hpp                                       |    2 
 inst/include/boost/date_time/time_iterator.hpp                                                 |    2 
 inst/include/boost/date_time/time_parsing.hpp                                                  |    2 
 inst/include/boost/date_time/time_resolution_traits.hpp                                        |   12 
 inst/include/boost/date_time/time_system_counted.hpp                                           |    2 
 inst/include/boost/date_time/time_system_split.hpp                                             |    2 
 inst/include/boost/date_time/time_zone_base.hpp                                                |    2 
 inst/include/boost/date_time/time_zone_names.hpp                                               |    2 
 inst/include/boost/date_time/tz_db_base.hpp                                                    |   11 
 inst/include/boost/date_time/wrapping_int.hpp                                                  |    2 
 inst/include/boost/date_time/year_month_day.hpp                                                |    2 
 inst/include/boost/detail/allocator_utilities.hpp                                              |   27 
 inst/include/boost/detail/basic_pointerbuf.hpp                                                 |only
 inst/include/boost/detail/catch_exceptions.hpp                                                 |    6 
 inst/include/boost/detail/compressed_pair.hpp                                                  |    2 
 inst/include/boost/detail/container_fwd.hpp                                                    |    7 
 inst/include/boost/detail/dynamic_bitset.hpp                                                   |   28 
 inst/include/boost/detail/endian.hpp                                                           |    2 
 inst/include/boost/detail/fenv.hpp                                                             |   33 
 inst/include/boost/detail/identifier.hpp                                                       |    2 
 inst/include/boost/detail/indirect_traits.hpp                                                  |  283 
 inst/include/boost/detail/interlocked.hpp                                                      |   36 
 inst/include/boost/detail/is_incrementable.hpp                                                 |    5 
 inst/include/boost/detail/is_xxx.hpp                                                           |   34 
 inst/include/boost/detail/iterator.hpp                                                         |  486 
 inst/include/boost/detail/lightweight_test.hpp                                                 |  215 
 inst/include/boost/detail/lightweight_test_report.hpp                                          |only
 inst/include/boost/detail/no_exceptions_support.hpp                                            |   94 
 inst/include/boost/detail/numeric_traits.hpp                                                   |   11 
 inst/include/boost/detail/ob_compressed_pair.hpp                                               |   11 
 inst/include/boost/detail/reference_content.hpp                                                |   21 
 inst/include/boost/detail/scoped_enum_emulation.hpp                                            |  340 
 inst/include/boost/detail/sp_typeinfo.hpp                                                      |  115 
 inst/include/boost/detail/utf8_codecvt_facet.hpp                                               |   76 
 inst/include/boost/detail/utf8_codecvt_facet.ipp                                               |   16 
 inst/include/boost/detail/winapi/basic_types.hpp                                               |   42 
 inst/include/boost/detail/winapi/config.hpp                                                    |only
 inst/include/boost/detail/winapi/crypt.hpp                                                     |only
 inst/include/boost/detail/winapi/dll.hpp                                                       |   59 
 inst/include/boost/detail/winapi/handles.hpp                                                   |   14 
 inst/include/boost/detail/winapi/process.hpp                                                   |    7 
 inst/include/boost/detail/winapi/synchronization.hpp                                           |  261 
 inst/include/boost/detail/winapi/system.hpp                                                    |   12 
 inst/include/boost/detail/winapi/thread.hpp                                                    |   18 
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 inst/include/boost/detail/winapi/time.hpp                                                      |   20 
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 inst/include/boost/dynamic_bitset/dynamic_bitset.hpp                                           |  210 
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 inst/include/boost/exception/detail/exception_ptr.hpp                                          |   12 
 inst/include/boost/exception/detail/type_info.hpp                                              |   16 
 inst/include/boost/exception/diagnostic_information.hpp                                        |    8 
 inst/include/boost/exception/exception.hpp                                                     |    6 
 inst/include/boost/filesystem/operations.hpp                                                   |  414 
 inst/include/boost/filesystem/path.hpp                                                         |  227 
 inst/include/boost/filesystem/path_traits.hpp                                                  |  201 
 inst/include/boost/foreach.hpp                                                                 |   23 
 inst/include/boost/format/detail/config_macros.hpp                                             |   10 
 inst/include/boost/format/detail/msvc_disambiguater.hpp                                        |    6 
 inst/include/boost/format/detail/workarounds_stlport.hpp                                       |    6 
 inst/include/boost/format/feed_args.hpp                                                        |   48 
 inst/include/boost/format/format_class.hpp                                                     |    2 
 inst/include/boost/format/format_fwd.hpp                                                       |   10 
 inst/include/boost/format/internals.hpp                                                        |   17 
 inst/include/boost/format/internals_fwd.hpp                                                    |    4 
 inst/include/boost/format/parsing.hpp                                                          |    7 
 inst/include/boost/function/function_base.hpp                                                  |   16 
 inst/include/boost/function/function_fwd.hpp                                                   |    3 
 inst/include/boost/function/function_template.hpp                                              |   35 
 inst/include/boost/function_output_iterator.hpp                                                |   12 
 inst/include/boost/function_types/components.hpp                                               |    4 
 inst/include/boost/function_types/detail/class_transform.hpp                                   |    2 
 inst/include/boost/function_types/detail/cv_traits.hpp                                         |    6 
 inst/include/boost/function_types/detail/to_sequence.hpp                                       |    2 
 inst/include/boost/function_types/property_tags.hpp                                            |    2 
 inst/include/boost/functional.hpp                                                              |    2 
 inst/include/boost/functional/factory.hpp                                                      |   20 
 inst/include/boost/functional/hash/detail/float_functions.hpp                                  |    8 
 inst/include/boost/functional/hash/detail/hash_float.hpp                                       |    8 
 inst/include/boost/functional/hash/detail/limits.hpp                                           |    5 
 inst/include/boost/functional/hash/extensions.hpp                                              |   71 
 inst/include/boost/functional/hash/hash.hpp                                                    |  112 
 inst/include/boost/functional/hash/hash_fwd.hpp                                                |   10 
 inst/include/boost/functional/hash_fwd.hpp                                                     |    6 
 inst/include/boost/functional/value_factory.hpp                                                |    1 
 inst/include/boost/fusion/adapted.hpp                                                          |    1 
 inst/include/boost/fusion/adapted/adt.hpp                                                      |    1 
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 inst/include/boost/fusion/adapted/adt/detail/extension.hpp                                     |   14 
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 inst/include/boost/fusion/adapted/array/begin_impl.hpp                                         |    2 
 inst/include/boost/fusion/adapted/array/deref_impl.hpp                                         |    2 
 inst/include/boost/fusion/adapted/array/end_impl.hpp                                           |    2 
 inst/include/boost/fusion/adapted/array/is_sequence_impl.hpp                                   |    1 
 inst/include/boost/fusion/adapted/array/is_view_impl.hpp                                       |    1 
 inst/include/boost/fusion/adapted/array/size_impl.hpp                                          |    1 
 inst/include/boost/fusion/adapted/array/tag_of.hpp                                             |    1 
 inst/include/boost/fusion/adapted/array/value_at_impl.hpp                                      |    1 
 inst/include/boost/fusion/adapted/array/value_of_impl.hpp                                      |    1 
 inst/include/boost/fusion/adapted/boost_array.hpp                                              |    1 
 inst/include/boost/fusion/adapted/boost_array/array_iterator.hpp                               |   14 
 inst/include/boost/fusion/adapted/boost_array/detail/at_impl.hpp                               |    4 
 inst/include/boost/fusion/adapted/boost_array/detail/begin_impl.hpp                            |    6 
 inst/include/boost/fusion/adapted/boost_array/detail/category_of_impl.hpp                      |    1 
 inst/include/boost/fusion/adapted/boost_array/detail/end_impl.hpp                              |    6 
 inst/include/boost/fusion/adapted/boost_array/detail/is_sequence_impl.hpp                      |    1 
 inst/include/boost/fusion/adapted/boost_array/detail/is_view_impl.hpp                          |    1 
 inst/include/boost/fusion/adapted/boost_array/tag_of.hpp                                       |    1 
 inst/include/boost/fusion/adapted/boost_tuple.hpp                                              |    3 
 inst/include/boost/fusion/adapted/boost_tuple/boost_tuple_iterator.hpp                         |   38 
 inst/include/boost/fusion/adapted/boost_tuple/detail/at_impl.hpp                               |    2 
 inst/include/boost/fusion/adapted/boost_tuple/detail/begin_impl.hpp                            |    2 
 inst/include/boost/fusion/adapted/boost_tuple/detail/build_cons.hpp                            |only
 inst/include/boost/fusion/adapted/boost_tuple/detail/convert_impl.hpp                          |only
 inst/include/boost/fusion/adapted/boost_tuple/detail/end_impl.hpp                              |    2 
 inst/include/boost/fusion/adapted/boost_tuple/detail/is_sequence_impl.hpp                      |    1 
 inst/include/boost/fusion/adapted/boost_tuple/detail/is_view_impl.hpp                          |    1 
 inst/include/boost/fusion/adapted/boost_tuple/detail/size_impl.hpp                             |    1 
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 inst/include/boost/fusion/adapted/boost_tuple/mpl                                              |only
 inst/include/boost/fusion/adapted/boost_tuple/tag_of.hpp                                       |    1 
 inst/include/boost/fusion/adapted/mpl.hpp                                                      |    1 
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 inst/include/boost/fusion/adapted/mpl/detail/begin_impl.hpp                                    |    2 
 inst/include/boost/fusion/adapted/mpl/detail/category_of_impl.hpp                              |    1 
 inst/include/boost/fusion/adapted/mpl/detail/empty_impl.hpp                                    |    1 
 inst/include/boost/fusion/adapted/mpl/detail/end_impl.hpp                                      |    2 
 inst/include/boost/fusion/adapted/mpl/detail/has_key_impl.hpp                                  |    1 
 inst/include/boost/fusion/adapted/mpl/detail/is_sequence_impl.hpp                              |    1 
 inst/include/boost/fusion/adapted/mpl/detail/is_view_impl.hpp                                  |    1 
 inst/include/boost/fusion/adapted/mpl/detail/size_impl.hpp                                     |    1 
 inst/include/boost/fusion/adapted/mpl/detail/value_at_impl.hpp                                 |    1 
 inst/include/boost/fusion/adapted/mpl/mpl_iterator.hpp                                         |   15 
 inst/include/boost/fusion/adapted/std_pair.hpp                                                 |    1 
 inst/include/boost/fusion/adapted/std_tuple.hpp                                                |    3 
 inst/include/boost/fusion/adapted/std_tuple/detail/at_impl.hpp                                 |    2 
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 inst/include/boost/fusion/adapted/std_tuple/detail/category_of_impl.hpp                        |    4 
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 inst/include/boost/fusion/adapted/std_tuple/detail/is_sequence_impl.hpp                        |    1 
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 inst/include/boost/fusion/adapted/std_tuple/detail/size_impl.hpp                               |    1 
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 inst/include/boost/fusion/adapted/std_tuple/mpl                                                |only
 inst/include/boost/fusion/adapted/std_tuple/std_tuple_iterator.hpp                             |   14 
 inst/include/boost/fusion/adapted/std_tuple/tag_of.hpp                                         |    1 
 inst/include/boost/fusion/adapted/struct.hpp                                                   |    1 
 inst/include/boost/fusion/adapted/struct/adapt_assoc_struct.hpp                                |   29 
 inst/include/boost/fusion/adapted/struct/adapt_assoc_struct_named.hpp                          |    1 
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 inst/include/boost/fusion/adapted/struct/detail/define_struct_inline.hpp                       |   24 
 inst/include/boost/fusion/adapted/struct/detail/deref_impl.hpp                                 |    4 
 inst/include/boost/fusion/adapted/struct/detail/end_impl.hpp                                   |    3 
 inst/include/boost/fusion/adapted/struct/detail/extension.hpp                                  |    1 
 inst/include/boost/fusion/adapted/struct/detail/is_sequence_impl.hpp                           |    1 
 inst/include/boost/fusion/adapted/struct/detail/namespace.hpp                                  |    1 
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 inst/include/boost/fusion/adapted/struct/detail/proxy_type.hpp                                 |    4 
 inst/include/boost/fusion/algorithm.hpp                                                        |    1 
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 inst/include/boost/fusion/algorithm/auxiliary/copy.hpp                                         |   27 
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 inst/include/boost/fusion/algorithm/iteration/accumulate.hpp                                   |    9 
 inst/include/boost/fusion/algorithm/iteration/accumulate_fwd.hpp                               |    7 
 inst/include/boost/fusion/algorithm/iteration/detail/fold.hpp                                  |  144 
 inst/include/boost/fusion/algorithm/iteration/detail/for_each.hpp                              |   13 
 inst/include/boost/fusion/algorithm/iteration/detail/preprocessed/fold.hpp                     |  127 
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 inst/include/boost/fusion/algorithm/iteration/fold_fwd.hpp                                     |   12 
 inst/include/boost/fusion/algorithm/iteration/for_each.hpp                                     |    9 
 inst/include/boost/fusion/algorithm/iteration/for_each_fwd.hpp                                 |    9 
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 inst/include/boost/fusion/algorithm/iteration/iter_fold_fwd.hpp                                |   12 
 inst/include/boost/fusion/algorithm/iteration/reverse_fold.hpp                                 |    1 
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 inst/include/boost/fusion/algorithm/query.hpp                                                  |    1 
 inst/include/boost/fusion/algorithm/query/all.hpp                                              |    2 
 inst/include/boost/fusion/algorithm/query/any.hpp                                              |    2 
 inst/include/boost/fusion/algorithm/query/count.hpp                                            |    5 
 inst/include/boost/fusion/algorithm/query/count_if.hpp                                         |    5 
 inst/include/boost/fusion/algorithm/query/detail/all.hpp                                       |   24 
 inst/include/boost/fusion/algorithm/query/detail/any.hpp                                       |   24 
 inst/include/boost/fusion/algorithm/query/detail/count.hpp                                     |   11 
 inst/include/boost/fusion/algorithm/query/detail/count_if.hpp                                  |   12 
 inst/include/boost/fusion/algorithm/query/detail/find_if.hpp                                   |    8 
 inst/include/boost/fusion/algorithm/query/detail/segmented_find.hpp                            |    5 
 inst/include/boost/fusion/algorithm/query/detail/segmented_find_if.hpp                         |    5 
 inst/include/boost/fusion/algorithm/query/find.hpp                                             |    5 
 inst/include/boost/fusion/algorithm/query/find_fwd.hpp                                         |    5 
 inst/include/boost/fusion/algorithm/query/find_if.hpp                                          |    5 
 inst/include/boost/fusion/algorithm/query/find_if_fwd.hpp                                      |    7 
 inst/include/boost/fusion/algorithm/query/none.hpp                                             |    2 
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 inst/include/boost/fusion/algorithm/transformation/clear.hpp                                   |    2 
 inst/include/boost/fusion/algorithm/transformation/detail/preprocessed/zip10.hpp               |   45 
 inst/include/boost/fusion/algorithm/transformation/detail/preprocessed/zip20.hpp               |   95 
 inst/include/boost/fusion/algorithm/transformation/detail/preprocessed/zip30.hpp               |  145 
 inst/include/boost/fusion/algorithm/transformation/detail/preprocessed/zip40.hpp               |  195 
 inst/include/boost/fusion/algorithm/transformation/detail/preprocessed/zip50.hpp               |  245 
 inst/include/boost/fusion/algorithm/transformation/detail/replace.hpp                          |    7 
 inst/include/boost/fusion/algorithm/transformation/detail/replace_if.hpp                       |    7 
 inst/include/boost/fusion/algorithm/transformation/erase.hpp                                   |   16 
 inst/include/boost/fusion/algorithm/transformation/erase_key.hpp                               |    2 
 inst/include/boost/fusion/algorithm/transformation/filter.hpp                                  |    4 
 inst/include/boost/fusion/algorithm/transformation/filter_if.hpp                               |    4 
 inst/include/boost/fusion/algorithm/transformation/flatten.hpp                                 |only
 inst/include/boost/fusion/algorithm/transformation/insert.hpp                                  |    5 
 inst/include/boost/fusion/algorithm/transformation/insert_range.hpp                            |    2 
 inst/include/boost/fusion/algorithm/transformation/join.hpp                                    |    2 
 inst/include/boost/fusion/algorithm/transformation/pop_back.hpp                                |    6 
 inst/include/boost/fusion/algorithm/transformation/pop_front.hpp                               |    6 
 inst/include/boost/fusion/algorithm/transformation/push_back.hpp                               |    5 
 inst/include/boost/fusion/algorithm/transformation/push_front.hpp                              |    5 
 inst/include/boost/fusion/algorithm/transformation/remove.hpp                                  |    2 
 inst/include/boost/fusion/algorithm/transformation/remove_if.hpp                               |    2 
 inst/include/boost/fusion/algorithm/transformation/replace.hpp                                 |    5 
 inst/include/boost/fusion/algorithm/transformation/replace_if.hpp                              |    5 
 inst/include/boost/fusion/algorithm/transformation/reverse.hpp                                 |    5 
 inst/include/boost/fusion/algorithm/transformation/transform.hpp                               |    3 
 inst/include/boost/fusion/algorithm/transformation/zip.hpp                                     |   15 
 inst/include/boost/fusion/container.hpp                                                        |    1 
 inst/include/boost/fusion/container/deque.hpp                                                  |    1 
 inst/include/boost/fusion/container/deque/back_extended_deque.hpp                              |    7 
 inst/include/boost/fusion/container/deque/convert.hpp                                          |    3 
 inst/include/boost/fusion/container/deque/deque.hpp                                            |   66 
 inst/include/boost/fusion/container/deque/deque_fwd.hpp                                        |   29 
 inst/include/boost/fusion/container/deque/deque_iterator.hpp                                   |   19 
 inst/include/boost/fusion/container/deque/detail/at_impl.hpp                                   |    2 
 inst/include/boost/fusion/container/deque/detail/begin_impl.hpp                                |   13 
 inst/include/boost/fusion/container/deque/detail/build_deque.hpp                               |    4 
 inst/include/boost/fusion/container/deque/detail/convert_impl.hpp                              |    3 
 inst/include/boost/fusion/container/deque/detail/cpp03/as_deque.hpp                            |    9 
 inst/include/boost/fusion/container/deque/detail/cpp03/build_deque.hpp                         |    2 
 inst/include/boost/fusion/container/deque/detail/cpp03/deque.hpp                               |   79 
 inst/include/boost/fusion/container/deque/detail/cpp03/deque_forward_ctor.hpp                  |   27 
 inst/include/boost/fusion/container/deque/detail/cpp03/deque_keyed_values.hpp                  |    2 
 inst/include/boost/fusion/container/deque/detail/cpp03/deque_keyed_values_call.hpp             |   19 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/as_deque10.hpp             |   12 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/as_deque20.hpp             |   22 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/as_deque30.hpp             |   32 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/as_deque40.hpp             |   42 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/as_deque50.hpp             |   52 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/deque10.hpp                |  255 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/deque20.hpp                |  465 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/deque30.hpp                |  675 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/deque40.hpp                |  885 -
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/deque50.hpp                | 1095 +
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/deque_keyed_values10.hpp   |  177 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/deque_keyed_values20.hpp   |  347 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/deque_keyed_values30.hpp   |  517 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/deque_keyed_values40.hpp   |  687 
 inst/include/boost/fusion/container/deque/detail/cpp03/preprocessed/deque_keyed_values50.hpp   |  857 -
 inst/include/boost/fusion/container/deque/detail/deque_keyed_values.hpp                        |   19 
 inst/include/boost/fusion/container/deque/detail/end_impl.hpp                                  |   13 
 inst/include/boost/fusion/container/deque/detail/is_sequence_impl.hpp                          |    1 
 inst/include/boost/fusion/container/deque/detail/keyed_element.hpp                             |   39 
 inst/include/boost/fusion/container/deque/detail/value_at_impl.hpp                             |    1 
 inst/include/boost/fusion/container/deque/front_extended_deque.hpp                             |    6 
 inst/include/boost/fusion/container/generation.hpp                                             |    1 
 inst/include/boost/fusion/container/generation/cons_tie.hpp                                    |    3 
 inst/include/boost/fusion/container/generation/deque_tie.hpp                                   |    4 
 inst/include/boost/fusion/container/generation/detail/pp_deque_tie.hpp                         |   11 
 inst/include/boost/fusion/container/generation/detail/pp_make_deque.hpp                        |   15 
 inst/include/boost/fusion/container/generation/detail/pp_make_map.hpp                          |   20 
 inst/include/boost/fusion/container/generation/detail/pp_map_tie.hpp                           |   15 
 inst/include/boost/fusion/container/generation/detail/preprocessed/deque_tie10.hpp             |   70 
 inst/include/boost/fusion/container/generation/detail/preprocessed/deque_tie20.hpp             |  140 
 inst/include/boost/fusion/container/generation/detail/preprocessed/deque_tie30.hpp             |  210 
 inst/include/boost/fusion/container/generation/detail/preprocessed/deque_tie40.hpp             |  280 
 inst/include/boost/fusion/container/generation/detail/preprocessed/deque_tie50.hpp             |  350 
 inst/include/boost/fusion/container/generation/detail/preprocessed/list_tie10.hpp              |   70 
 inst/include/boost/fusion/container/generation/detail/preprocessed/list_tie20.hpp              |  140 
 inst/include/boost/fusion/container/generation/detail/preprocessed/list_tie30.hpp              |  210 
 inst/include/boost/fusion/container/generation/detail/preprocessed/list_tie40.hpp              |  280 
 inst/include/boost/fusion/container/generation/detail/preprocessed/list_tie50.hpp              |  350 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_deque10.hpp            |   71 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_deque20.hpp            |  141 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_deque30.hpp            |  211 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_deque40.hpp            |  281 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_deque50.hpp            |  351 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_list10.hpp             |   71 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_list20.hpp             |  141 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_list30.hpp             |  211 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_list40.hpp             |  281 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_list50.hpp             |  351 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_map10.hpp              |   71 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_map20.hpp              |  141 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_map30.hpp              |  211 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_map40.hpp              |  281 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_map50.hpp              |  351 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_set10.hpp              |   77 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_set20.hpp              |  147 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_set30.hpp              |  217 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_set40.hpp              |  287 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_set50.hpp              |  357 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_vector10.hpp           |   71 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_vector20.hpp           |  141 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_vector30.hpp           |  211 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_vector40.hpp           |  281 
 inst/include/boost/fusion/container/generation/detail/preprocessed/make_vector50.hpp           |  351 
 inst/include/boost/fusion/container/generation/detail/preprocessed/map_tie10.hpp               |   71 
 inst/include/boost/fusion/container/generation/detail/preprocessed/map_tie20.hpp               |  141 
 inst/include/boost/fusion/container/generation/detail/preprocessed/map_tie30.hpp               |  211 
 inst/include/boost/fusion/container/generation/detail/preprocessed/map_tie40.hpp               |  281 
 inst/include/boost/fusion/container/generation/detail/preprocessed/map_tie50.hpp               |  351 
 inst/include/boost/fusion/container/generation/detail/preprocessed/vector_tie10.hpp            |   70 
 inst/include/boost/fusion/container/generation/detail/preprocessed/vector_tie20.hpp            |  140 
 inst/include/boost/fusion/container/generation/detail/preprocessed/vector_tie30.hpp            |  210 
 inst/include/boost/fusion/container/generation/detail/preprocessed/vector_tie40.hpp            |  280 
 inst/include/boost/fusion/container/generation/detail/preprocessed/vector_tie50.hpp            |  350 
 inst/include/boost/fusion/container/generation/ignore.hpp                                      |    3 
 inst/include/boost/fusion/container/generation/list_tie.hpp                                    |    9 
 inst/include/boost/fusion/container/generation/make_cons.hpp                                   |    3 
 inst/include/boost/fusion/container/generation/make_deque.hpp                                  |    6 
 inst/include/boost/fusion/container/generation/make_list.hpp                                   |   10 
 inst/include/boost/fusion/container/generation/make_map.hpp                                    |    8 
 inst/include/boost/fusion/container/generation/make_set.hpp                                    |   27 
 inst/include/boost/fusion/container/generation/make_vector.hpp                                 |   10 
 inst/include/boost/fusion/container/generation/map_tie.hpp                                     |    8 
 inst/include/boost/fusion/container/generation/pair_tie.hpp                                    |    3 
 inst/include/boost/fusion/container/generation/vector_tie.hpp                                  |    9 
 inst/include/boost/fusion/container/list.hpp                                                   |    1 
 inst/include/boost/fusion/container/list/cons.hpp                                              |   54 
 inst/include/boost/fusion/container/list/cons_fwd.hpp                                          |    2 
 inst/include/boost/fusion/container/list/cons_iterator.hpp                                     |   44 
 inst/include/boost/fusion/container/list/convert.hpp                                           |    4 
 inst/include/boost/fusion/container/list/detail/at_impl.hpp                                    |    4 
 inst/include/boost/fusion/container/list/detail/begin_impl.hpp                                 |    4 
 inst/include/boost/fusion/container/list/detail/build_cons.hpp                                 |    7 
 inst/include/boost/fusion/container/list/detail/convert_impl.hpp                               |    2 
 inst/include/boost/fusion/container/list/detail/deref_impl.hpp                                 |    8 
 inst/include/boost/fusion/container/list/detail/empty_impl.hpp                                 |    2 
 inst/include/boost/fusion/container/list/detail/end_impl.hpp                                   |    6 
 inst/include/boost/fusion/container/list/detail/equal_to_impl.hpp                              |    3 
 inst/include/boost/fusion/container/list/detail/list_forward_ctor.hpp                          |    5 
 inst/include/boost/fusion/container/list/detail/list_to_cons.hpp                               |    1 
 inst/include/boost/fusion/container/list/detail/list_to_cons_call.hpp                          |    7 
 inst/include/boost/fusion/container/list/detail/next_impl.hpp                                  |    6 
 inst/include/boost/fusion/container/list/detail/preprocessed/list10.hpp                        |   80 
 inst/include/boost/fusion/container/list/detail/preprocessed/list20.hpp                        |  150 
 inst/include/boost/fusion/container/list/detail/preprocessed/list30.hpp                        |  220 
 inst/include/boost/fusion/container/list/detail/preprocessed/list40.hpp                        |  290 
 inst/include/boost/fusion/container/list/detail/preprocessed/list50.hpp                        |  360 
 inst/include/boost/fusion/container/list/detail/preprocessed/list_to_cons10.hpp                |   68 
 inst/include/boost/fusion/container/list/detail/preprocessed/list_to_cons20.hpp                |  138 
 inst/include/boost/fusion/container/list/detail/preprocessed/list_to_cons30.hpp                |  208 
 inst/include/boost/fusion/container/list/detail/preprocessed/list_to_cons40.hpp                |  278 
 inst/include/boost/fusion/container/list/detail/preprocessed/list_to_cons50.hpp                |  348 
 inst/include/boost/fusion/container/list/detail/reverse_cons.hpp                               |    3 
 inst/include/boost/fusion/container/list/detail/value_at_impl.hpp                              |    5 
 inst/include/boost/fusion/container/list/detail/value_of_impl.hpp                              |    2 
 inst/include/boost/fusion/container/list/limits.hpp                                            |    2 
 inst/include/boost/fusion/container/list/list.hpp                                              |   23 
 inst/include/boost/fusion/container/list/list_fwd.hpp                                          |    1 
 inst/include/boost/fusion/container/list/nil.hpp                                               |only
 inst/include/boost/fusion/container/map.hpp                                                    |    1 
 inst/include/boost/fusion/container/map/convert.hpp                                            |   36 
 inst/include/boost/fusion/container/map/detail/at_impl.hpp                                     |    8 
 inst/include/boost/fusion/container/map/detail/at_key_impl.hpp                                 |    8 
 inst/include/boost/fusion/container/map/detail/begin_impl.hpp                                  |    2 
 inst/include/boost/fusion/container/map/detail/build_map.hpp                                   |   25 
 inst/include/boost/fusion/container/map/detail/cpp03/as_map.hpp                                |   37 
 inst/include/boost/fusion/container/map/detail/cpp03/at_impl.hpp                               |   17 
 inst/include/boost/fusion/container/map/detail/cpp03/begin_impl.hpp                            |    2 
 inst/include/boost/fusion/container/map/detail/cpp03/convert.hpp                               |   12 
 inst/include/boost/fusion/container/map/detail/cpp03/convert_impl.hpp                          |   11 
 inst/include/boost/fusion/container/map/detail/cpp03/deref_data_impl.hpp                       |    2 
 inst/include/boost/fusion/container/map/detail/cpp03/deref_impl.hpp                            |    2 
 inst/include/boost/fusion/container/map/detail/cpp03/end_impl.hpp                              |    2 
 inst/include/boost/fusion/container/map/detail/cpp03/key_of_impl.hpp                           |    1 
 inst/include/boost/fusion/container/map/detail/cpp03/limits.hpp                                |    1 
 inst/include/boost/fusion/container/map/detail/cpp03/map.hpp                                   |   54 
 inst/include/boost/fusion/container/map/detail/cpp03/map_forward_ctor.hpp                      |   35 
 inst/include/boost/fusion/container/map/detail/cpp03/map_fwd.hpp                               |    3 
 inst/include/boost/fusion/container/map/detail/cpp03/preprocessed/as_map10.hpp                 |  112 
 inst/include/boost/fusion/container/map/detail/cpp03/preprocessed/as_map20.hpp                 |  222 
 inst/include/boost/fusion/container/map/detail/cpp03/preprocessed/as_map30.hpp                 |  332 
 inst/include/boost/fusion/container/map/detail/cpp03/preprocessed/as_map40.hpp                 |  442 
 inst/include/boost/fusion/container/map/detail/cpp03/preprocessed/as_map50.hpp                 |  552 
 inst/include/boost/fusion/container/map/detail/cpp03/preprocessed/map10.hpp                    |  160 
 inst/include/boost/fusion/container/map/detail/cpp03/preprocessed/map20.hpp                    |  280 
 inst/include/boost/fusion/container/map/detail/cpp03/preprocessed/map30.hpp                    |  400 
 inst/include/boost/fusion/container/map/detail/cpp03/preprocessed/map40.hpp                    |  520 
 inst/include/boost/fusion/container/map/detail/cpp03/preprocessed/map50.hpp                    |  640 
 inst/include/boost/fusion/container/map/detail/cpp03/value_at_impl.hpp                         |    3 
 inst/include/boost/fusion/container/map/detail/cpp03/value_of_data_impl.hpp                    |    1 
 inst/include/boost/fusion/container/map/detail/cpp03/value_of_impl.hpp                         |    1 
 inst/include/boost/fusion/container/map/detail/end_impl.hpp                                    |    2 
 inst/include/boost/fusion/container/map/detail/map_impl.hpp                                    |   56 
 inst/include/boost/fusion/container/map/detail/value_at_impl.hpp                               |    4 
 inst/include/boost/fusion/container/map/detail/value_at_key_impl.hpp                           |    4 
 inst/include/boost/fusion/container/map/map.hpp                                                |   20 
 inst/include/boost/fusion/container/map/map_fwd.hpp                                            |   26 
 inst/include/boost/fusion/container/map/map_iterator.hpp                                       |   45 
 inst/include/boost/fusion/container/set.hpp                                                    |    1 
 inst/include/boost/fusion/container/set/convert.hpp                                            |    3 
 inst/include/boost/fusion/container/set/detail/as_set.hpp                                      |    9 
 inst/include/boost/fusion/container/set/detail/begin_impl.hpp                                  |    2 
 inst/include/boost/fusion/container/set/detail/convert_impl.hpp                                |    2 
 inst/include/boost/fusion/container/set/detail/deref_data_impl.hpp                             |    1 
 inst/include/boost/fusion/container/set/detail/deref_impl.hpp                                  |    2 
 inst/include/boost/fusion/container/set/detail/end_impl.hpp                                    |    2 
 inst/include/boost/fusion/container/set/detail/key_of_impl.hpp                                 |    1 
 inst/include/boost/fusion/container/set/detail/preprocessed/as_set10.hpp                       |   12 
 inst/include/boost/fusion/container/set/detail/preprocessed/as_set20.hpp                       |   22 
 inst/include/boost/fusion/container/set/detail/preprocessed/as_set30.hpp                       |   32 
 inst/include/boost/fusion/container/set/detail/preprocessed/as_set40.hpp                       |   42 
 inst/include/boost/fusion/container/set/detail/preprocessed/as_set50.hpp                       |   52 
 inst/include/boost/fusion/container/set/detail/preprocessed/set10.hpp                          |   58 
 inst/include/boost/fusion/container/set/detail/preprocessed/set20.hpp                          |  108 
 inst/include/boost/fusion/container/set/detail/preprocessed/set30.hpp                          |  158 
 inst/include/boost/fusion/container/set/detail/preprocessed/set40.hpp                          |  208 
 inst/include/boost/fusion/container/set/detail/preprocessed/set50.hpp                          |  258 
 inst/include/boost/fusion/container/set/detail/set_forward_ctor.hpp                            |    5 
 inst/include/boost/fusion/container/set/detail/value_of_data_impl.hpp                          |    1 
 inst/include/boost/fusion/container/set/detail/value_of_impl.hpp                               |    1 
 inst/include/boost/fusion/container/set/limits.hpp                                             |    1 
 inst/include/boost/fusion/container/set/set.hpp                                                |   11 
 inst/include/boost/fusion/container/set/set_fwd.hpp                                            |    1 
 inst/include/boost/fusion/container/vector.hpp                                                 |    1 
 inst/include/boost/fusion/container/vector/convert.hpp                                         |    3 
 inst/include/boost/fusion/container/vector/detail/advance_impl.hpp                             |    5 
 inst/include/boost/fusion/container/vector/detail/as_vector.hpp                                |    8 
 inst/include/boost/fusion/container/vector/detail/at_impl.hpp                                  |   13 
 inst/include/boost/fusion/container/vector/detail/begin_impl.hpp                               |    6 
 inst/include/boost/fusion/container/vector/detail/convert_impl.hpp                             |    2 
 inst/include/boost/fusion/container/vector/detail/deref_impl.hpp                               |    6 
 inst/include/boost/fusion/container/vector/detail/distance_impl.hpp                            |    4 
 inst/include/boost/fusion/container/vector/detail/end_impl.hpp                                 |    6 
 inst/include/boost/fusion/container/vector/detail/equal_to_impl.hpp                            |    3 
 inst/include/boost/fusion/container/vector/detail/next_impl.hpp                                |    4 
 inst/include/boost/fusion/container/vector/detail/preprocessed/as_vector10.hpp                 |   12 
 inst/include/boost/fusion/container/vector/detail/preprocessed/as_vector20.hpp                 |   22 
 inst/include/boost/fusion/container/vector/detail/preprocessed/as_vector30.hpp                 |   32 
 inst/include/boost/fusion/container/vector/detail/preprocessed/as_vector40.hpp                 |   42 
 inst/include/boost/fusion/container/vector/detail/preprocessed/as_vector50.hpp                 |   52 
 inst/include/boost/fusion/container/vector/detail/preprocessed/vector10.hpp                    |  926 +
 inst/include/boost/fusion/container/vector/detail/preprocessed/vector20.hpp                    |  920 +
 inst/include/boost/fusion/container/vector/detail/preprocessed/vector30.hpp                    |  920 +
 inst/include/boost/fusion/container/vector/detail/preprocessed/vector40.hpp                    |  920 +
 inst/include/boost/fusion/container/vector/detail/preprocessed/vector50.hpp                    |  920 +
 inst/include/boost/fusion/container/vector/detail/preprocessed/vvector10.hpp                   |  235 
 inst/include/boost/fusion/container/vector/detail/preprocessed/vvector20.hpp                   |  425 
 inst/include/boost/fusion/container/vector/detail/preprocessed/vvector30.hpp                   |  615 
 inst/include/boost/fusion/container/vector/detail/preprocessed/vvector40.hpp                   |  805 
 inst/include/boost/fusion/container/vector/detail/preprocessed/vvector50.hpp                   |  995 +
 inst/include/boost/fusion/container/vector/detail/prior_impl.hpp                               |    4 
 inst/include/boost/fusion/container/vector/detail/value_at_impl.hpp                            |    3 
 inst/include/boost/fusion/container/vector/detail/value_of_impl.hpp                            |    3 
 inst/include/boost/fusion/container/vector/detail/vector_forward_ctor.hpp                      |   58 
 inst/include/boost/fusion/container/vector/detail/vector_n.hpp                                 |  198 
 inst/include/boost/fusion/container/vector/limits.hpp                                          |    1 
 inst/include/boost/fusion/container/vector/vector.hpp                                          |   65 
 inst/include/boost/fusion/container/vector/vector10.hpp                                        |   14 
 inst/include/boost/fusion/container/vector/vector10_fwd.hpp                                    |    1 
 inst/include/boost/fusion/container/vector/vector20.hpp                                        |    5 
 inst/include/boost/fusion/container/vector/vector20_fwd.hpp                                    |    1 
 inst/include/boost/fusion/container/vector/vector30.hpp                                        |    5 
 inst/include/boost/fusion/container/vector/vector30_fwd.hpp                                    |    1 
 inst/include/boost/fusion/container/vector/vector40.hpp                                        |    5 
 inst/include/boost/fusion/container/vector/vector40_fwd.hpp                                    |    1 
 inst/include/boost/fusion/container/vector/vector50.hpp                                        |    5 
 inst/include/boost/fusion/container/vector/vector50_fwd.hpp                                    |    1 
 inst/include/boost/fusion/container/vector/vector_fwd.hpp                                      |    1 
 inst/include/boost/fusion/container/vector/vector_iterator.hpp                                 |   12 
 inst/include/boost/fusion/functional.hpp                                                       |    1 
 inst/include/boost/fusion/functional/adapter.hpp                                               |    1 
 inst/include/boost/fusion/functional/adapter/fused.hpp                                         |    6 
 inst/include/boost/fusion/functional/adapter/fused_function_object.hpp                         |    6 
 inst/include/boost/fusion/functional/adapter/fused_procedure.hpp                               |    6 
 inst/include/boost/fusion/functional/adapter/unfused.hpp                                       |    8 
 inst/include/boost/fusion/functional/adapter/unfused_typed.hpp                                 |    5 
 inst/include/boost/fusion/functional/generation.hpp                                            |    1 
 inst/include/boost/fusion/functional/generation/detail/gen_make_adapter.hpp                    |    1 
 inst/include/boost/fusion/functional/generation/make_fused.hpp                                 |    1 
 inst/include/boost/fusion/functional/generation/make_fused_function_object.hpp                 |    1 
 inst/include/boost/fusion/functional/generation/make_fused_procedure.hpp                       |    1 
 inst/include/boost/fusion/functional/generation/make_unfused.hpp                               |    1 
 inst/include/boost/fusion/functional/invocation.hpp                                            |    1 
 inst/include/boost/fusion/functional/invocation/detail/that_ptr.hpp                            |    9 
 inst/include/boost/fusion/functional/invocation/invoke.hpp                                     |   68 
 inst/include/boost/fusion/functional/invocation/invoke_function_object.hpp                     |   55 
 inst/include/boost/fusion/functional/invocation/invoke_procedure.hpp                           |   54 
 inst/include/boost/fusion/include/accumulate.hpp                                               |    1 
 inst/include/boost/fusion/include/adapt_adt.hpp                                                |    1 
 inst/include/boost/fusion/include/adapt_adt_named.cpp                                          |    1 
 inst/include/boost/fusion/include/adapt_adt_named.hpp                                          |    1 
 inst/include/boost/fusion/include/adapt_assoc_adt.hpp                                          |    1 
 inst/include/boost/fusion/include/adapt_assoc_adt_named.hpp                                    |    1 
 inst/include/boost/fusion/include/adapt_assoc_struct.hpp                                       |    1 
 inst/include/boost/fusion/include/adapt_assoc_struct_named.hpp                                 |    1 
 inst/include/boost/fusion/include/adapt_struct.hpp                                             |    1 
 inst/include/boost/fusion/include/adapt_struct_named.hpp                                       |    1 
 inst/include/boost/fusion/include/adapted.hpp                                                  |    1 
 inst/include/boost/fusion/include/adapter.hpp                                                  |    1 
 inst/include/boost/fusion/include/advance.hpp                                                  |    1 
 inst/include/boost/fusion/include/algorithm.hpp                                                |    1 
 inst/include/boost/fusion/include/all.hpp                                                      |    1 
 inst/include/boost/fusion/include/any.hpp                                                      |    1 
 inst/include/boost/fusion/include/array.hpp                                                    |    1 
 inst/include/boost/fusion/include/as_deque.hpp                                                 |    1 
 inst/include/boost/fusion/include/as_list.hpp                                                  |    1 
 inst/include/boost/fusion/include/as_map.hpp                                                   |    1 
 inst/include/boost/fusion/include/as_set.hpp                                                   |    1 
 inst/include/boost/fusion/include/as_vector.hpp                                                |    1 
 inst/include/boost/fusion/include/at.hpp                                                       |    1 
 inst/include/boost/fusion/include/at_c.hpp                                                     |    1 
 inst/include/boost/fusion/include/at_key.hpp                                                   |    1 
 inst/include/boost/fusion/include/auxiliary.hpp                                                |    1 
 inst/include/boost/fusion/include/back.hpp                                                     |    1 
 inst/include/boost/fusion/include/begin.hpp                                                    |    1 
 inst/include/boost/fusion/include/boost_array.hpp                                              |    1 
 inst/include/boost/fusion/include/boost_tuple.hpp                                              |    1 
 inst/include/boost/fusion/include/category_of.hpp                                              |    1 
 inst/include/boost/fusion/include/clear.hpp                                                    |    1 
 inst/include/boost/fusion/include/comparison.hpp                                               |    1 
 inst/include/boost/fusion/include/cons.hpp                                                     |    1 
 inst/include/boost/fusion/include/cons_tie.hpp                                                 |    1 
 inst/include/boost/fusion/include/container.hpp                                                |    1 
 inst/include/boost/fusion/include/convert.hpp                                                  |    1 
 inst/include/boost/fusion/include/copy.hpp                                                     |    1 
 inst/include/boost/fusion/include/count.hpp                                                    |    1 
 inst/include/boost/fusion/include/count_if.hpp                                                 |    1 
 inst/include/boost/fusion/include/deduce.hpp                                                   |    1 
 inst/include/boost/fusion/include/deduce_sequence.hpp                                          |    1 
 inst/include/boost/fusion/include/define_assoc_struct.hpp                                      |    1 
 inst/include/boost/fusion/include/define_struct.hpp                                            |    1 
 inst/include/boost/fusion/include/define_struct_inline.hpp                                     |    1 
 inst/include/boost/fusion/include/deque.hpp                                                    |    1 
 inst/include/boost/fusion/include/deque_fwd.hpp                                                |    1 
 inst/include/boost/fusion/include/deque_tie.hpp                                                |    1 
 inst/include/boost/fusion/include/deref.hpp                                                    |    1 
 inst/include/boost/fusion/include/deref_data.hpp                                               |    1 
 inst/include/boost/fusion/include/distance.hpp                                                 |    1 
 inst/include/boost/fusion/include/empty.hpp                                                    |    1 
 inst/include/boost/fusion/include/end.hpp                                                      |    1 
 inst/include/boost/fusion/include/equal_to.hpp                                                 |    1 
 inst/include/boost/fusion/include/erase.hpp                                                    |    1 
 inst/include/boost/fusion/include/erase_key.hpp                                                |    1 
 inst/include/boost/fusion/include/filter.hpp                                                   |    1 
 inst/include/boost/fusion/include/filter_if.hpp                                                |    1 
 inst/include/boost/fusion/include/filter_view.hpp                                              |    1 
 inst/include/boost/fusion/include/find.hpp                                                     |    1 
 inst/include/boost/fusion/include/find_if.hpp                                                  |    1 
 inst/include/boost/fusion/include/flatten.hpp                                                  |only
 inst/include/boost/fusion/include/flatten_view.hpp                                             |only
 inst/include/boost/fusion/include/fold.hpp                                                     |    1 
 inst/include/boost/fusion/include/for_each.hpp                                                 |    1 
 inst/include/boost/fusion/include/front.hpp                                                    |    1 
 inst/include/boost/fusion/include/functional.hpp                                               |    1 
 inst/include/boost/fusion/include/fused.hpp                                                    |    1 
 inst/include/boost/fusion/include/fused_function_object.hpp                                    |    1 
 inst/include/boost/fusion/include/fused_procedure.hpp                                          |    1 
 inst/include/boost/fusion/include/generation.hpp                                               |    1 
 inst/include/boost/fusion/include/greater.hpp                                                  |    1 
 inst/include/boost/fusion/include/greater_equal.hpp                                            |    1 
 inst/include/boost/fusion/include/has_key.hpp                                                  |    1 
 inst/include/boost/fusion/include/hash.hpp                                                     |only
 inst/include/boost/fusion/include/ignore.hpp                                                   |    1 
 inst/include/boost/fusion/include/in.hpp                                                       |    1 
 inst/include/boost/fusion/include/insert.hpp                                                   |    1 
 inst/include/boost/fusion/include/insert_range.hpp                                             |    1 
 inst/include/boost/fusion/include/intrinsic.hpp                                                |    1 
 inst/include/boost/fusion/include/invocation.hpp                                               |    1 
 inst/include/boost/fusion/include/invoke.hpp                                                   |    1 
 inst/include/boost/fusion/include/invoke_function_object.hpp                                   |    1 
 inst/include/boost/fusion/include/invoke_procedure.hpp                                         |    1 
 inst/include/boost/fusion/include/io.hpp                                                       |    1 
 inst/include/boost/fusion/include/is_iterator.hpp                                              |    1 
 inst/include/boost/fusion/include/is_segmented.hpp                                             |    1 
 inst/include/boost/fusion/include/is_sequence.hpp                                              |    1 
 inst/include/boost/fusion/include/is_view.hpp                                                  |    1 
 inst/include/boost/fusion/include/iter_fold.hpp                                                |    1 
 inst/include/boost/fusion/include/iteration.hpp                                                |    1 
 inst/include/boost/fusion/include/iterator.hpp                                                 |    1 
 inst/include/boost/fusion/include/iterator_adapter.hpp                                         |    1 
 inst/include/boost/fusion/include/iterator_base.hpp                                            |    1 
 inst/include/boost/fusion/include/iterator_facade.hpp                                          |    1 
 inst/include/boost/fusion/include/iterator_range.hpp                                           |    1 
 inst/include/boost/fusion/include/join.hpp                                                     |    1 
 inst/include/boost/fusion/include/joint_view.hpp                                               |    1 
 inst/include/boost/fusion/include/key_of.hpp                                                   |    1 
 inst/include/boost/fusion/include/less.hpp                                                     |    1 
 inst/include/boost/fusion/include/less_equal.hpp                                               |    1 
 inst/include/boost/fusion/include/list.hpp                                                     |    1 
 inst/include/boost/fusion/include/list_fwd.hpp                                                 |    1 
 inst/include/boost/fusion/include/list_tie.hpp                                                 |    1 
 inst/include/boost/fusion/include/make_cons.hpp                                                |    1 
 inst/include/boost/fusion/include/make_deque.hpp                                               |    1 
 inst/include/boost/fusion/include/make_fused.hpp                                               |    1 
 inst/include/boost/fusion/include/make_fused_function_object.hpp                               |    1 
 inst/include/boost/fusion/include/make_fused_procedure.hpp                                     |    1 
 inst/include/boost/fusion/include/make_list.hpp                                                |    1 
 inst/include/boost/fusion/include/make_map.hpp                                                 |    1 
 inst/include/boost/fusion/include/make_set.hpp                                                 |    1 
 inst/include/boost/fusion/include/make_tuple.hpp                                               |    1 
 inst/include/boost/fusion/include/make_unfused.hpp                                             |    1 
 inst/include/boost/fusion/include/make_vector.hpp                                              |    1 
 inst/include/boost/fusion/include/map.hpp                                                      |    1 
 inst/include/boost/fusion/include/map_fwd.hpp                                                  |    1 
 inst/include/boost/fusion/include/map_tie.hpp                                                  |    1 
 inst/include/boost/fusion/include/move.hpp                                                     |    1 
 inst/include/boost/fusion/include/mpl.hpp                                                      |    1 
 inst/include/boost/fusion/include/next.hpp                                                     |    1 
 inst/include/boost/fusion/include/nil.hpp                                                      |only
 inst/include/boost/fusion/include/none.hpp                                                     |    1 
 inst/include/boost/fusion/include/not_equal_to.hpp                                             |    1 
 inst/include/boost/fusion/include/nview.hpp                                                    |    1 
 inst/include/boost/fusion/include/out.hpp                                                      |    1 
 inst/include/boost/fusion/include/pair.hpp                                                     |    1 
 inst/include/boost/fusion/include/pair_tie.hpp                                                 |    1 
 inst/include/boost/fusion/include/pop_back.hpp                                                 |    1 
 inst/include/boost/fusion/include/pop_front.hpp                                                |    1 
 inst/include/boost/fusion/include/prior.hpp                                                    |    1 
 inst/include/boost/fusion/include/proxy_type.hpp                                               |    1 
 inst/include/boost/fusion/include/push_back.hpp                                                |    1 
 inst/include/boost/fusion/include/push_front.hpp                                               |    1 
 inst/include/boost/fusion/include/query.hpp                                                    |    1 
 inst/include/boost/fusion/include/remove.hpp                                                   |    1 
 inst/include/boost/fusion/include/remove_if.hpp                                                |    1 
 inst/include/boost/fusion/include/repetitive_view.hpp                                          |    1 
 inst/include/boost/fusion/include/replace.hpp                                                  |    1 
 inst/include/boost/fusion/include/replace_if.hpp                                               |    1 
 inst/include/boost/fusion/include/reverse.hpp                                                  |    1 
 inst/include/boost/fusion/include/reverse_fold.hpp                                             |    1 
 inst/include/boost/fusion/include/reverse_iter_fold.hpp                                        |    1 
 inst/include/boost/fusion/include/reverse_view.hpp                                             |    1 
 inst/include/boost/fusion/include/segmented_fold_until.hpp                                     |    1 
 inst/include/boost/fusion/include/segmented_iterator.hpp                                       |    1 
 inst/include/boost/fusion/include/segments.hpp                                                 |    1 
 inst/include/boost/fusion/include/sequence.hpp                                                 |    1 
 inst/include/boost/fusion/include/sequence_base.hpp                                            |    1 
 inst/include/boost/fusion/include/sequence_facade.hpp                                          |    1 
 inst/include/boost/fusion/include/set.hpp                                                      |    1 
 inst/include/boost/fusion/include/set_fwd.hpp                                                  |    1 
 inst/include/boost/fusion/include/single_view.hpp                                              |    1 
 inst/include/boost/fusion/include/size.hpp                                                     |    1 
 inst/include/boost/fusion/include/std_pair.hpp                                                 |    1 
 inst/include/boost/fusion/include/std_tuple.hpp                                                |only
 inst/include/boost/fusion/include/struct.hpp                                                   |    1 
 inst/include/boost/fusion/include/support.hpp                                                  |    1 
 inst/include/boost/fusion/include/swap.hpp                                                     |    1 
 inst/include/boost/fusion/include/tag_of.hpp                                                   |    1 
 inst/include/boost/fusion/include/tag_of_fwd.hpp                                               |    1 
 inst/include/boost/fusion/include/transform.hpp                                                |    1 
 inst/include/boost/fusion/include/transform_view.hpp                                           |    1 
 inst/include/boost/fusion/include/transformation.hpp                                           |    1 
 inst/include/boost/fusion/include/tuple.hpp                                                    |    1 
 inst/include/boost/fusion/include/tuple_fwd.hpp                                                |    1 
 inst/include/boost/fusion/include/tuple_tie.hpp                                                |    1 
 inst/include/boost/fusion/include/unfused.hpp                                                  |    1 
 inst/include/boost/fusion/include/unfused_typed.hpp                                            |    1 
 inst/include/boost/fusion/include/unused.hpp                                                   |    1 
 inst/include/boost/fusion/include/value_at.hpp                                                 |    1 
 inst/include/boost/fusion/include/value_at_key.hpp                                             |    1 
 inst/include/boost/fusion/include/value_of.hpp                                                 |    1 
 inst/include/boost/fusion/include/value_of_data.hpp                                            |    1 
 inst/include/boost/fusion/include/vector.hpp                                                   |    1 
 inst/include/boost/fusion/include/vector10.hpp                                                 |    1 
 inst/include/boost/fusion/include/vector20.hpp                                                 |    1 
 inst/include/boost/fusion/include/vector30.hpp                                                 |    1 
 inst/include/boost/fusion/include/vector40.hpp                                                 |    1 
 inst/include/boost/fusion/include/vector50.hpp                                                 |    1 
 inst/include/boost/fusion/include/vector_fwd.hpp                                               |    1 
 inst/include/boost/fusion/include/vector_tie.hpp                                               |    1 
 inst/include/boost/fusion/include/view.hpp                                                     |    1 
 inst/include/boost/fusion/include/void.hpp                                                     |    1 
 inst/include/boost/fusion/include/zip.hpp                                                      |    1 
 inst/include/boost/fusion/include/zip_view.hpp                                                 |    1 
 inst/include/boost/fusion/iterator.hpp                                                         |    1 
 inst/include/boost/fusion/iterator/advance.hpp                                                 |    3 
 inst/include/boost/fusion/iterator/basic_iterator.hpp                                          |   17 
 inst/include/boost/fusion/iterator/deref.hpp                                                   |    7 
 inst/include/boost/fusion/iterator/deref_data.hpp                                              |    4 
 inst/include/boost/fusion/iterator/detail/adapt_deref_traits.hpp                               |    2 
 inst/include/boost/fusion/iterator/detail/adapt_value_traits.hpp                               |    1 
 inst/include/boost/fusion/iterator/detail/advance.hpp                                          |    5 
 inst/include/boost/fusion/iterator/detail/distance.hpp                                         |    2 
 inst/include/boost/fusion/iterator/detail/segment_sequence.hpp                                 |    4 
 inst/include/boost/fusion/iterator/detail/segmented_equal_to.hpp                               |    1 
 inst/include/boost/fusion/iterator/detail/segmented_iterator.hpp                               |    6 
 inst/include/boost/fusion/iterator/detail/segmented_next_impl.hpp                              |   11 
 inst/include/boost/fusion/iterator/distance.hpp                                                |    2 
 inst/include/boost/fusion/iterator/equal_to.hpp                                                |    3 
 inst/include/boost/fusion/iterator/iterator_adapter.hpp                                        |   26 
 inst/include/boost/fusion/iterator/iterator_facade.hpp                                         |   11 
 inst/include/boost/fusion/iterator/key_of.hpp                                                  |    1 
 inst/include/boost/fusion/iterator/mpl.hpp                                                     |    1 
 inst/include/boost/fusion/iterator/mpl/convert_iterator.hpp                                    |    4 
 inst/include/boost/fusion/iterator/mpl/fusion_iterator.hpp                                     |    1 
 inst/include/boost/fusion/iterator/next.hpp                                                    |    4 
 inst/include/boost/fusion/iterator/prior.hpp                                                   |    4 
 inst/include/boost/fusion/iterator/segmented_iterator.hpp                                      |    1 
 inst/include/boost/fusion/iterator/value_of.hpp                                                |    1 
 inst/include/boost/fusion/iterator/value_of_data.hpp                                           |    1 
 inst/include/boost/fusion/mpl/at.hpp                                                           |    1 
 inst/include/boost/fusion/mpl/back.hpp                                                         |    1 
 inst/include/boost/fusion/mpl/begin.hpp                                                        |    1 
 inst/include/boost/fusion/mpl/clear.hpp                                                        |    1 
 inst/include/boost/fusion/mpl/detail/clear.hpp                                                 |    1 
 inst/include/boost/fusion/mpl/empty.hpp                                                        |    1 
 inst/include/boost/fusion/mpl/end.hpp                                                          |    1 
 inst/include/boost/fusion/mpl/erase.hpp                                                        |    1 
 inst/include/boost/fusion/mpl/erase_key.hpp                                                    |    1 
 inst/include/boost/fusion/mpl/front.hpp                                                        |    1 
 inst/include/boost/fusion/mpl/has_key.hpp                                                      |    1 
 inst/include/boost/fusion/mpl/insert.hpp                                                       |    1 
 inst/include/boost/fusion/mpl/insert_range.hpp                                                 |    1 
 inst/include/boost/fusion/mpl/pop_back.hpp                                                     |    1 
 inst/include/boost/fusion/mpl/pop_front.hpp                                                    |    1 
 inst/include/boost/fusion/mpl/push_back.hpp                                                    |    1 
 inst/include/boost/fusion/mpl/push_front.hpp                                                   |    1 
 inst/include/boost/fusion/mpl/size.hpp                                                         |    1 
 inst/include/boost/fusion/sequence.hpp                                                         |    3 
 inst/include/boost/fusion/sequence/comparison.hpp                                              |    1 
 inst/include/boost/fusion/sequence/comparison/detail/equal_to.hpp                              |    5 
 inst/include/boost/fusion/sequence/comparison/detail/greater.hpp                               |    4 
 inst/include/boost/fusion/sequence/comparison/detail/greater_equal.hpp                         |    4 
 inst/include/boost/fusion/sequence/comparison/detail/less.hpp                                  |    4 
 inst/include/boost/fusion/sequence/comparison/detail/less_equal.hpp                            |    4 
 inst/include/boost/fusion/sequence/comparison/detail/not_equal_to.hpp                          |    5 
 inst/include/boost/fusion/sequence/comparison/enable_comparison.hpp                            |    1 
 inst/include/boost/fusion/sequence/comparison/equal_to.hpp                                     |    3 
 inst/include/boost/fusion/sequence/comparison/greater.hpp                                      |    3 
 inst/include/boost/fusion/sequence/comparison/greater_equal.hpp                                |    3 
 inst/include/boost/fusion/sequence/comparison/less.hpp                                         |    3 
 inst/include/boost/fusion/sequence/comparison/less_equal.hpp                                   |    6 
 inst/include/boost/fusion/sequence/comparison/not_equal_to.hpp                                 |    3 
 inst/include/boost/fusion/sequence/convert.hpp                                                 |   12 
 inst/include/boost/fusion/sequence/hash.hpp                                                    |only
 inst/include/boost/fusion/sequence/intrinsic.hpp                                               |    2 
 inst/include/boost/fusion/sequence/intrinsic/at.hpp                                            |   23 
 inst/include/boost/fusion/sequence/intrinsic/at_c.hpp                                          |    1 
 inst/include/boost/fusion/sequence/intrinsic/at_key.hpp                                        |    4 
 inst/include/boost/fusion/sequence/intrinsic/back.hpp                                          |    3 
 inst/include/boost/fusion/sequence/intrinsic/begin.hpp                                         |    7 
 inst/include/boost/fusion/sequence/intrinsic/detail/segmented_begin.hpp                        |    2 
 inst/include/boost/fusion/sequence/intrinsic/detail/segmented_begin_impl.hpp                   |    4 
 inst/include/boost/fusion/sequence/intrinsic/detail/segmented_end.hpp                          |    2 
 inst/include/boost/fusion/sequence/intrinsic/detail/segmented_end_impl.hpp                     |   13 
 inst/include/boost/fusion/sequence/intrinsic/detail/segmented_size.hpp                         |    1 
 inst/include/boost/fusion/sequence/intrinsic/empty.hpp                                         |    2 
 inst/include/boost/fusion/sequence/intrinsic/end.hpp                                           |    7 
 inst/include/boost/fusion/sequence/intrinsic/front.hpp                                         |    3 
 inst/include/boost/fusion/sequence/intrinsic/has_key.hpp                                       |    2 
 inst/include/boost/fusion/sequence/intrinsic/segments.hpp                                      |    3 
 inst/include/boost/fusion/sequence/intrinsic/size.hpp                                          |   18 
 inst/include/boost/fusion/sequence/intrinsic/swap.hpp                                          |   15 
 inst/include/boost/fusion/sequence/intrinsic/value_at.hpp                                      |    1 
 inst/include/boost/fusion/sequence/intrinsic/value_at_key.hpp                                  |    1 
 inst/include/boost/fusion/sequence/intrinsic_fwd.hpp                                           |   20 
 inst/include/boost/fusion/sequence/io.hpp                                                      |    1 
 inst/include/boost/fusion/sequence/io/detail/in.hpp                                            |    1 
 inst/include/boost/fusion/sequence/io/detail/manip.hpp                                         |   61 
 inst/include/boost/fusion/sequence/io/detail/out.hpp                                           |    1 
 inst/include/boost/fusion/sequence/io/in.hpp                                                   |    1 
 inst/include/boost/fusion/sequence/io/out.hpp                                                  |    1 
 inst/include/boost/fusion/sequence/sequence_facade.hpp                                         |    1 
 inst/include/boost/fusion/support.hpp                                                          |    3 
 inst/include/boost/fusion/support/as_const.hpp                                                 |    6 
 inst/include/boost/fusion/support/category_of.hpp                                              |    1 
 inst/include/boost/fusion/support/config.hpp                                                   |only
 inst/include/boost/fusion/support/deduce.hpp                                                   |   20 
 inst/include/boost/fusion/support/deduce_sequence.hpp                                          |    2 
 inst/include/boost/fusion/support/detail/access.hpp                                            |    9 
 inst/include/boost/fusion/support/detail/as_fusion_element.hpp                                 |   13 
 inst/include/boost/fusion/support/detail/enabler.hpp                                           |only
 inst/include/boost/fusion/support/detail/is_mpl_sequence.hpp                                   |    1 
 inst/include/boost/fusion/support/detail/pp_round.hpp                                          |    1 
 inst/include/boost/fusion/support/detail/result_of.hpp                                         |only
 inst/include/boost/fusion/support/detail/segmented_fold_until_impl.hpp                         |   14 
 inst/include/boost/fusion/support/is_iterator.hpp                                              |    1 
 inst/include/boost/fusion/support/is_segmented.hpp                                             |    1 
 inst/include/boost/fusion/support/is_sequence.hpp                                              |    7 
 inst/include/boost/fusion/support/is_view.hpp                                                  |    1 
 inst/include/boost/fusion/support/iterator_base.hpp                                            |    9 
 inst/include/boost/fusion/support/pair.hpp                                                     |   24 
 inst/include/boost/fusion/support/segmented_fold_until.hpp                                     |   11 
 inst/include/boost/fusion/support/sequence_base.hpp                                            |   11 
 inst/include/boost/fusion/support/tag_of.hpp                                                   |    1 
 inst/include/boost/fusion/support/unused.hpp                                                   |   30 
 inst/include/boost/fusion/tuple.hpp                                                            |    2 
 inst/include/boost/fusion/tuple/detail/preprocessed/make_tuple10.hpp                           |   50 
 inst/include/boost/fusion/tuple/detail/preprocessed/make_tuple20.hpp                           |  100 
 inst/include/boost/fusion/tuple/detail/preprocessed/make_tuple30.hpp                           |  150 
 inst/include/boost/fusion/tuple/detail/preprocessed/make_tuple40.hpp                           |  200 
 inst/include/boost/fusion/tuple/detail/preprocessed/make_tuple50.hpp                           |  250 
 inst/include/boost/fusion/tuple/detail/preprocessed/tuple.hpp                                  |    3 
 inst/include/boost/fusion/tuple/detail/preprocessed/tuple10.hpp                                |   80 
 inst/include/boost/fusion/tuple/detail/preprocessed/tuple20.hpp                                |  150 
 inst/include/boost/fusion/tuple/detail/preprocessed/tuple30.hpp                                |  220 
 inst/include/boost/fusion/tuple/detail/preprocessed/tuple40.hpp                                |  290 
 inst/include/boost/fusion/tuple/detail/preprocessed/tuple50.hpp                                |  360 
 inst/include/boost/fusion/tuple/detail/preprocessed/tuple_tie10.hpp                            |   50 
 inst/include/boost/fusion/tuple/detail/preprocessed/tuple_tie20.hpp                            |  100 
 inst/include/boost/fusion/tuple/detail/preprocessed/tuple_tie30.hpp                            |  150 
 inst/include/boost/fusion/tuple/detail/preprocessed/tuple_tie40.hpp                            |  200 
 inst/include/boost/fusion/tuple/detail/preprocessed/tuple_tie50.hpp                            |  250 
 inst/include/boost/fusion/tuple/detail/tuple_expand.hpp                                        |    7 
 inst/include/boost/fusion/tuple/make_tuple.hpp                                                 |    7 
 inst/include/boost/fusion/tuple/tuple.hpp                                                      |   12 
 inst/include/boost/fusion/tuple/tuple_fwd.hpp                                                  |    2 
 inst/include/boost/fusion/tuple/tuple_tie.hpp                                                  |    5 
 inst/include/boost/fusion/view.hpp                                                             |    2 
 inst/include/boost/fusion/view/detail/strictest_traversal.hpp                                  |    2 
 inst/include/boost/fusion/view/filter_view.hpp                                                 |    1 
 inst/include/boost/fusion/view/filter_view/detail/begin_impl.hpp                               |    1 
 inst/include/boost/fusion/view/filter_view/detail/deref_data_impl.hpp                          |    2 
 inst/include/boost/fusion/view/filter_view/detail/deref_impl.hpp                               |    1 
 inst/include/boost/fusion/view/filter_view/detail/end_impl.hpp                                 |    1 
 inst/include/boost/fusion/view/filter_view/detail/key_of_impl.hpp                              |    1 
 inst/include/boost/fusion/view/filter_view/detail/next_impl.hpp                                |    2 
 inst/include/boost/fusion/view/filter_view/detail/size_impl.hpp                                |    1 
 inst/include/boost/fusion/view/filter_view/detail/value_of_data_impl.hpp                       |    1 
 inst/include/boost/fusion/view/filter_view/detail/value_of_impl.hpp                            |    1 
 inst/include/boost/fusion/view/filter_view/filter_view.hpp                                     |    4 
 inst/include/boost/fusion/view/filter_view/filter_view_iterator.hpp                            |   11 
 inst/include/boost/fusion/view/flatten_view                                                    |only
 inst/include/boost/fusion/view/flatten_view.hpp                                                |only
 inst/include/boost/fusion/view/iterator_range.hpp                                              |    1 
 inst/include/boost/fusion/view/iterator_range/detail/at_impl.hpp                               |    2 
 inst/include/boost/fusion/view/iterator_range/detail/begin_impl.hpp                            |    3 
 inst/include/boost/fusion/view/iterator_range/detail/end_impl.hpp                              |    3 
 inst/include/boost/fusion/view/iterator_range/detail/is_segmented_impl.hpp                     |    1 
 inst/include/boost/fusion/view/iterator_range/detail/segmented_iterator_range.hpp              |   17 
 inst/include/boost/fusion/view/iterator_range/detail/segments_impl.hpp                         |    2 
 inst/include/boost/fusion/view/iterator_range/detail/size_impl.hpp                             |    1 
 inst/include/boost/fusion/view/iterator_range/detail/value_at_impl.hpp                         |    1 
 inst/include/boost/fusion/view/iterator_range/iterator_range.hpp                               |    2 
 inst/include/boost/fusion/view/joint_view.hpp                                                  |    1 
 inst/include/boost/fusion/view/joint_view/detail/begin_impl.hpp                                |    4 
 inst/include/boost/fusion/view/joint_view/detail/deref_data_impl.hpp                           |    2 
 inst/include/boost/fusion/view/joint_view/detail/deref_impl.hpp                                |    1 
 inst/include/boost/fusion/view/joint_view/detail/end_impl.hpp                                  |    2 
 inst/include/boost/fusion/view/joint_view/detail/key_of_impl.hpp                               |    1 
 inst/include/boost/fusion/view/joint_view/detail/next_impl.hpp                                 |    4 
 inst/include/boost/fusion/view/joint_view/detail/value_of_data_impl.hpp                        |    1 
 inst/include/boost/fusion/view/joint_view/detail/value_of_impl.hpp                             |    1 
 inst/include/boost/fusion/view/joint_view/joint_view.hpp                                       |    5 
 inst/include/boost/fusion/view/joint_view/joint_view_iterator.hpp                              |   11 
 inst/include/boost/fusion/view/nview.hpp                                                       |    1 
 inst/include/boost/fusion/view/nview/detail/advance_impl.hpp                                   |    4 
 inst/include/boost/fusion/view/nview/detail/at_impl.hpp                                        |    6 
 inst/include/boost/fusion/view/nview/detail/begin_impl.hpp                                     |    2 
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 inst/include/boost/fusion/view/reverse_view.hpp                                                |    1 
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 inst/include/boost/fusion/view/single_view.hpp                                                 |    1 
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 inst/include/boost/fusion/view/zip_view.hpp                                                    |    1 
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 inst/include/boost/generator_iterator.hpp                                                      |   11 
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 inst/include/boost/geometry/core/access.hpp                                                    |    6 
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 inst/include/boost/geometry/core/cs.hpp                                                        |   75 
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 inst/include/boost/geometry/core/interior_rings.hpp                                            |   13 
 inst/include/boost/geometry/core/interior_type.hpp                                             |    2 
 inst/include/boost/geometry/core/is_areal.hpp                                                  |    5 
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 inst/include/boost/geometry/core/srs.hpp                                                       |only
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 inst/include/boost/geometry/core/tag_cast.hpp                                                  |    4 
 inst/include/boost/geometry/core/tags.hpp                                                      |   58 
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 inst/include/boost/geometry/geometry.hpp                                                       |   38 
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 inst/include/boost/geometry/index/equal_to.hpp                                                 |  115 
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 inst/include/boost/geometry/io/dsv/write.hpp                                                   |   64 
 inst/include/boost/geometry/io/svg/svg_mapper.hpp                                              |    1 
 inst/include/boost/geometry/io/svg/write_svg.hpp                                               |   14 
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 inst/include/boost/geometry/multi/algorithms/within.hpp                                        |   92 
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 inst/include/boost/geometry/multi/core/is_areal.hpp                                            |   21 
 inst/include/boost/geometry/multi/core/point_order.hpp                                         |   36 
 inst/include/boost/geometry/multi/core/point_type.hpp                                          |   42 
 inst/include/boost/geometry/multi/core/ring_type.hpp                                           |   47 
 inst/include/boost/geometry/multi/core/tags.hpp                                                |   51 
 inst/include/boost/geometry/multi/core/topological_dimension.hpp                               |   30 
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 inst/include/boost/geometry/views/box_view.hpp                                                 |   20 
 inst/include/boost/geometry/views/closeable_view.hpp                                           |    4 
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 inst/include/boost/geometry/views/detail/range_type.hpp                                        |   42 
 inst/include/boost/geometry/views/identity_view.hpp                                            |    2 
 inst/include/boost/geometry/views/segment_view.hpp                                             |   14 
 inst/include/boost/graph/adjacency_list.hpp                                                    |    2 
 inst/include/boost/graph/adjacency_matrix.hpp                                                  |    7 
 inst/include/boost/graph/detail/adjacency_list.hpp                                             |   55 
 inst/include/boost/graph/detail/edge.hpp                                                       |   23 
 inst/include/boost/graph/directed_graph.hpp                                                    |    2 
 inst/include/boost/graph/distributed/adjacency_list.hpp                                        |   26 
 inst/include/boost/graph/distributed/betweenness_centrality.hpp                                |    8 
 inst/include/boost/graph/distributed/boman_et_al_graph_coloring.hpp                            |    2 
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 inst/include/boost/graph/distributed/detail/remote_update_set.hpp                              |    2 
 inst/include/boost/graph/distributed/mpi_process_group.hpp                                     |    6 
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 inst/include/boost/graph/graph_as_tree.hpp                                                     |    4 
 inst/include/boost/graph/graph_concepts.hpp                                                    |    9 
 inst/include/boost/graph/graph_utility.hpp                                                     |   20 
 inst/include/boost/graph/graphviz.hpp                                                          |   56 
 inst/include/boost/graph/leda_graph.hpp                                                        |    2 
 inst/include/boost/graph/mcgregor_common_subgraphs.hpp                                         |   14 
 inst/include/boost/graph/named_graph.hpp                                                       |   39 
 inst/include/boost/graph/parallel/basic_reduce.hpp                                             |   35 
 inst/include/boost/graph/parallel/detail/untracked_pair.hpp                                    |   78 
 inst/include/boost/graph/parallel/process_group.hpp                                            |   94 
 inst/include/boost/graph/parallel/simple_trigger.hpp                                           |   99 
 inst/include/boost/graph/properties.hpp                                                        |   19 
 inst/include/boost/graph/r_c_shortest_paths.hpp                                                |  112 
 inst/include/boost/graph/reverse_graph.hpp                                                     |    5 
 inst/include/boost/graph/stanford_graph.hpp                                                    |   46 
 inst/include/boost/graph/undirected_graph.hpp                                                  |    2 
 inst/include/boost/graph/vector_as_graph.hpp                                                   |    5 
 inst/include/boost/graph/vf2_sub_graph_iso.hpp                                                 |   12 
 inst/include/boost/graph/visitors.hpp                                                          |   21 
 inst/include/boost/heap/binomial_heap.hpp                                                      |   13 
 inst/include/boost/heap/d_ary_heap.hpp                                                         |    5 
 inst/include/boost/heap/fibonacci_heap.hpp                                                     |   39 
 inst/include/boost/heap/heap_merge.hpp                                                         |    5 
 inst/include/boost/heap/pairing_heap.hpp                                                       |    5 
 inst/include/boost/heap/policies.hpp                                                           |    3 
 inst/include/boost/heap/priority_queue.hpp                                                     |    5 
 inst/include/boost/heap/skew_heap.hpp                                                          |    3 
 inst/include/boost/implicit_cast.hpp                                                           |   13 
 inst/include/boost/indirect_reference.hpp                                                      |    4 
 inst/include/boost/integer.hpp                                                                 |   49 
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 inst/include/boost/interprocess/detail/min_max.hpp                                             |    6 
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 inst/include/boost/interprocess/detail/posix_time_types_wrk.hpp                                |    8 
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 inst/include/boost/interprocess/detail/robust_emulation.hpp                                    |   76 
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 inst/include/boost/interprocess/errors.hpp                                                     |   31 
 inst/include/boost/interprocess/exceptions.hpp                                                 |   11 
 inst/include/boost/interprocess/file_mapping.hpp                                               |   33 
 inst/include/boost/interprocess/indexes/flat_map_index.hpp                                     |   23 
 inst/include/boost/interprocess/indexes/iset_index.hpp                                         |   32 
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 inst/include/boost/interprocess/indexes/map_index.hpp                                          |   21 
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 inst/include/boost/interprocess/interprocess_fwd.hpp                                           |  163 
 inst/include/boost/interprocess/ipc/message_queue.hpp                                          |  255 
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 inst/include/boost/interprocess/offset_ptr.hpp                                                 |   86 
 inst/include/boost/interprocess/permissions.hpp                                                |   22 
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 inst/include/boost/interprocess/sync/interprocess_condition.hpp                                |   26 
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 inst/include/boost/interprocess/sync/lock_options.hpp                                          |   10 
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 inst/include/boost/interprocess/sync/posix/condition.hpp                                       |   17 
 inst/include/boost/interprocess/sync/posix/mutex.hpp                                           |   30 
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 inst/include/boost/interprocess/sync/posix/ptime_to_timespec.hpp                               |   12 
 inst/include/boost/interprocess/sync/posix/recursive_mutex.hpp                                 |   30 
 inst/include/boost/interprocess/sync/posix/semaphore.hpp                                       |    6 
 inst/include/boost/interprocess/sync/posix/semaphore_wrapper.hpp                               |   78 
 inst/include/boost/interprocess/sync/scoped_lock.hpp                                           |   21 
 inst/include/boost/interprocess/sync/sharable_lock.hpp                                         |   21 
 inst/include/boost/interprocess/sync/shm/named_condition.hpp                                   |   24 
 inst/include/boost/interprocess/sync/shm/named_condition_any.hpp                               |   20 
 inst/include/boost/interprocess/sync/shm/named_creation_functor.hpp                            |   13 
 inst/include/boost/interprocess/sync/shm/named_mutex.hpp                                       |   26 
 inst/include/boost/interprocess/sync/shm/named_recursive_mutex.hpp                             |   26 
 inst/include/boost/interprocess/sync/shm/named_semaphore.hpp                                   |   22 
 inst/include/boost/interprocess/sync/shm/named_upgradable_mutex.hpp                            |   46 
 inst/include/boost/interprocess/sync/spin/condition.hpp                                        |   24 
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 inst/include/boost/interprocess/sync/spin/mutex.hpp                                            |   46 
 inst/include/boost/interprocess/sync/spin/recursive_mutex.hpp                                  |   11 
 inst/include/boost/interprocess/sync/spin/semaphore.hpp                                        |   39 
 inst/include/boost/interprocess/sync/spin/wait.hpp                                             |   10 
 inst/include/boost/interprocess/sync/upgradable_lock.hpp                                       |   20 
 inst/include/boost/interprocess/sync/windows/condition.hpp                                     |   14 
 inst/include/boost/interprocess/sync/windows/mutex.hpp                                         |    6 
 inst/include/boost/interprocess/sync/windows/named_condition.hpp                               |    6 
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 inst/include/boost/interprocess/sync/windows/named_mutex.hpp                                   |   14 
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 inst/include/boost/interprocess/sync/windows/named_semaphore.hpp                               |   14 
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 inst/include/boost/interprocess/sync/windows/semaphore.hpp                                     |    6 
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 inst/include/boost/interprocess/windows_shared_memory.hpp                                      |   41 
 inst/include/boost/interprocess/xsi_key.hpp                                                    |   16 
 inst/include/boost/interprocess/xsi_shared_memory.hpp                                          |   36 
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 inst/include/boost/intrusive/avl_set.hpp                                                       |  108 
 inst/include/boost/intrusive/avl_set_hook.hpp                                                  |   24 
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 inst/include/boost/intrusive/bs_set_hook.hpp                                                   |   22 
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 inst/include/boost/intrusive/bstree_algorithms.hpp                                             |  683 
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 inst/include/boost/intrusive/intrusive_fwd.hpp                                                 |  315 
 inst/include/boost/intrusive/linear_slist_algorithms.hpp                                       |   10 
 inst/include/boost/intrusive/link_mode.hpp                                                     |   23 
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 inst/include/boost/intrusive/list_hook.hpp                                                     |   23 
 inst/include/boost/intrusive/member_value_traits.hpp                                           |   26 
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 inst/include/boost/intrusive/priority_compare.hpp                                              |   16 
 inst/include/boost/intrusive/rbtree.hpp                                                        |   73 
 inst/include/boost/intrusive/rbtree_algorithms.hpp                                             |  247 
 inst/include/boost/intrusive/set.hpp                                                           |   99 
 inst/include/boost/intrusive/set_hook.hpp                                                      |   24 
 inst/include/boost/intrusive/sg_set.hpp                                                        |  106 
 inst/include/boost/intrusive/sgtree.hpp                                                        |  156 
 inst/include/boost/intrusive/sgtree_algorithms.hpp                                             |   52 
 inst/include/boost/intrusive/slist.hpp                                                         |  419 
 inst/include/boost/intrusive/slist_hook.hpp                                                    |   23 
 inst/include/boost/intrusive/splay_set.hpp                                                     |  191 
 inst/include/boost/intrusive/splaytree.hpp                                                     |  152 
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 inst/include/boost/intrusive/treap_algorithms.hpp                                              |   99 
 inst/include/boost/intrusive/treap_set.hpp                                                     |  115 
 inst/include/boost/intrusive/trivial_value_traits.hpp                                          |   14 
 inst/include/boost/intrusive/unordered_set.hpp                                                 |   51 
 inst/include/boost/intrusive/unordered_set_hook.hpp                                            |   43 
 inst/include/boost/iterator.hpp                                                                |   49 
 inst/include/boost/iterator/counting_iterator.hpp                                              |   41 
 inst/include/boost/iterator/detail/any_conversion_eater.hpp                                    |    6 
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 inst/include/boost/iterator/detail/facade_iterator_category.hpp                                |   37 
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 inst/include/boost/iterator/function_input_iterator.hpp                                        |   17 
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 inst/include/boost/iterator/interoperable.hpp                                                  |   12 
 inst/include/boost/iterator/is_lvalue_iterator.hpp                                             |   37 
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 inst/include/boost/logic/tribool.hpp                                                           |   94 
 inst/include/boost/math/bindings/detail/big_lanczos.hpp                                        |   20 
 inst/include/boost/math/bindings/mpfr.hpp                                                      |   10 
 inst/include/boost/math/common_factor_ct.hpp                                                   |   83 
 inst/include/boost/math/common_factor_rt.hpp                                                   |   70 
 inst/include/boost/math/concepts/real_concept.hpp                                              |    6 
 inst/include/boost/math/concepts/std_real_concept.hpp                                          |   13 
 inst/include/boost/math/constants/calculate_constants.hpp                                      |   14 
 inst/include/boost/math/constants/constants.hpp                                                |   41 
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 inst/include/boost/math/distributions/detail/hypergeometric_pdf.hpp                            |   18 
 inst/include/boost/math/distributions/detail/inv_discrete_quantile.hpp                         |   18 
 inst/include/boost/math/distributions/exponential.hpp                                          |    6 
 inst/include/boost/math/distributions/extreme_value.hpp                                        |    5 
 inst/include/boost/math/distributions/fwd.hpp                                                  |   11 
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 inst/include/boost/math/distributions/negative_binomial.hpp                                    |   25 
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 inst/include/boost/math/distributions/non_central_t.hpp                                        |    4 
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 inst/include/boost/math/distributions/pareto.hpp                                               |    4 
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 inst/include/boost/math/distributions/students_t.hpp                                           |   12 
 inst/include/boost/math/octonion.hpp                                                           |  516 
 inst/include/boost/math/policies/error_handling.hpp                                            |   92 
 inst/include/boost/math/policies/policy.hpp                                                    |   10 
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 inst/include/boost/math/special_functions/sin_pi.hpp                                           |   12 
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 inst/include/boost/math/tools/big_constant.hpp                                                 |   39 
 inst/include/boost/math/tools/config.hpp                                                       |   59 
 inst/include/boost/math/tools/precision.hpp                                                    |   61 
 inst/include/boost/math/tools/roots.hpp                                                        |   10 
 inst/include/boost/math/tools/toms748_solve.hpp                                                |   48 
 inst/include/boost/math/tools/tuple.hpp                                                        |   22 
 inst/include/boost/math/tools/user.hpp                                                         |    8 
 inst/include/boost/memory_order.hpp                                                            |   14 
 inst/include/boost/move/adl_move_swap.hpp                                                      |only
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 inst/include/boost/move/detail/config_end.hpp                                                  |   12 
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 inst/include/boost/mpi/config.hpp                                                              |    6 
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 inst/include/boost/mpi/packed_iarchive.hpp                                                     |   13 
 inst/include/boost/mpi/packed_oarchive.hpp                                                     |   14 
 inst/include/boost/mpi/python/config.hpp                                                       |    6 
 inst/include/boost/mpl/O1_size.hpp                                                             |    6 
 inst/include/boost/mpl/O1_size_fwd.hpp                                                         |    6 
 inst/include/boost/mpl/accumulate.hpp                                                          |    6 
 inst/include/boost/mpl/advance.hpp                                                             |    6 
 inst/include/boost/mpl/advance_fwd.hpp                                                         |    6 
 inst/include/boost/mpl/alias.hpp                                                               |    6 
 inst/include/boost/mpl/always.hpp                                                              |   13 
 inst/include/boost/mpl/and.hpp                                                                 |   10 
 inst/include/boost/mpl/apply.hpp                                                               |    6 
 inst/include/boost/mpl/apply_fwd.hpp                                                           |    6 
 inst/include/boost/mpl/apply_wrap.hpp                                                          |    6 
 inst/include/boost/mpl/arg.hpp                                                                 |    6 
 inst/include/boost/mpl/arg_fwd.hpp                                                             |    6 
 inst/include/boost/mpl/arithmetic.hpp                                                          |    6 
 inst/include/boost/mpl/as_sequence.hpp                                                         |    6 
 inst/include/boost/mpl/assert.hpp                                                              |    9 
 inst/include/boost/mpl/at.hpp                                                                  |    6 
 inst/include/boost/mpl/at_fwd.hpp                                                              |    6 
 inst/include/boost/mpl/aux_/O1_size_impl.hpp                                                   |    6 
 inst/include/boost/mpl/aux_/adl_barrier.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/advance_backward.hpp                                               |    6 
 inst/include/boost/mpl/aux_/advance_forward.hpp                                                |    6 
 inst/include/boost/mpl/aux_/apply_1st.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/arg_typedef.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/arithmetic_op.hpp                                                  |    6 
 inst/include/boost/mpl/aux_/arity.hpp                                                          |    6 
 inst/include/boost/mpl/aux_/arity_spec.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/at_impl.hpp                                                        |    6 
 inst/include/boost/mpl/aux_/back_impl.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/basic_bind.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/begin_end_impl.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/clear_impl.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/common_name_wknd.hpp                                               |    6 
 inst/include/boost/mpl/aux_/comparison_op.hpp                                                  |    6 
 inst/include/boost/mpl/aux_/config/adl.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/config/arrays.hpp                                                  |    6 
 inst/include/boost/mpl/aux_/config/bcc.hpp                                                     |    2 
 inst/include/boost/mpl/aux_/config/bind.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/config/compiler.hpp                                                |    6 
 inst/include/boost/mpl/aux_/config/ctps.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/config/dependent_nttp.hpp                                          |    6 
 inst/include/boost/mpl/aux_/config/dmc_ambiguous_ctps.hpp                                      |    6 
 inst/include/boost/mpl/aux_/config/dtp.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/config/eti.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/config/forwarding.hpp                                              |    6 
 inst/include/boost/mpl/aux_/config/gcc.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/config/gpu.hpp                                                     |only
 inst/include/boost/mpl/aux_/config/has_apply.hpp                                               |    6 
 inst/include/boost/mpl/aux_/config/has_xxx.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/config/integral.hpp                                                |    6 
 inst/include/boost/mpl/aux_/config/intel.hpp                                                   |    6 
 inst/include/boost/mpl/aux_/config/lambda.hpp                                                  |    6 
 inst/include/boost/mpl/aux_/config/msvc.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/config/msvc_typename.hpp                                           |    6 
 inst/include/boost/mpl/aux_/config/nttp.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/config/operators.hpp                                               |    7 
 inst/include/boost/mpl/aux_/config/overload_resolution.hpp                                     |    6 
 inst/include/boost/mpl/aux_/config/pp_counter.hpp                                              |    6 
 inst/include/boost/mpl/aux_/config/preprocessor.hpp                                            |    6 
 inst/include/boost/mpl/aux_/config/static_constant.hpp                                         |    6 
 inst/include/boost/mpl/aux_/config/ttp.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/config/typeof.hpp                                                  |    6 
 inst/include/boost/mpl/aux_/config/use_preprocessed.hpp                                        |    6 
 inst/include/boost/mpl/aux_/config/workaround.hpp                                              |    6 
 inst/include/boost/mpl/aux_/contains_impl.hpp                                                  |    6 
 inst/include/boost/mpl/aux_/count_args.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/count_impl.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/empty_impl.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/erase_impl.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/erase_key_impl.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/filter_iter.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/fold_impl.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/fold_impl_body.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/fold_op.hpp                                                        |    6 
 inst/include/boost/mpl/aux_/fold_pred.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/front_impl.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/full_lambda.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/has_apply.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/has_begin.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/has_key_impl.hpp                                                   |    6 
 inst/include/boost/mpl/aux_/has_rebind.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/has_size.hpp                                                       |    6 
 inst/include/boost/mpl/aux_/has_tag.hpp                                                        |    6 
 inst/include/boost/mpl/aux_/has_type.hpp                                                       |    6 
 inst/include/boost/mpl/aux_/include_preprocessed.hpp                                           |    6 
 inst/include/boost/mpl/aux_/insert_impl.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/insert_range_impl.hpp                                              |    6 
 inst/include/boost/mpl/aux_/inserter_algorithm.hpp                                             |    6 
 inst/include/boost/mpl/aux_/integral_wrapper.hpp                                               |    8 
 inst/include/boost/mpl/aux_/is_msvc_eti_arg.hpp                                                |    6 
 inst/include/boost/mpl/aux_/iter_apply.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/iter_fold_if_impl.hpp                                              |    6 
 inst/include/boost/mpl/aux_/iter_fold_impl.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/iter_push_front.hpp                                                |    6 
 inst/include/boost/mpl/aux_/joint_iter.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/lambda_arity_param.hpp                                             |    6 
 inst/include/boost/mpl/aux_/lambda_no_ctps.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/lambda_spec.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/lambda_support.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/largest_int.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/logical_op.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/msvc_dtw.hpp                                                       |    6 
 inst/include/boost/mpl/aux_/msvc_eti_base.hpp                                                  |    6 
 inst/include/boost/mpl/aux_/msvc_is_class.hpp                                                  |    6 
 inst/include/boost/mpl/aux_/msvc_never_true.hpp                                                |    6 
 inst/include/boost/mpl/aux_/msvc_type.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/na.hpp                                                             |    6 
 inst/include/boost/mpl/aux_/na_assert.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/na_fwd.hpp                                                         |    6 
 inst/include/boost/mpl/aux_/na_spec.hpp                                                        |    6 
 inst/include/boost/mpl/aux_/nested_type_wknd.hpp                                               |    6 
 inst/include/boost/mpl/aux_/nttp_decl.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/numeric_cast_utils.hpp                                             |    6 
 inst/include/boost/mpl/aux_/numeric_op.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/order_impl.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/overload_names.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/partition_op.hpp                                                   |    6 
 inst/include/boost/mpl/aux_/pop_back_impl.hpp                                                  |    6 
 inst/include/boost/mpl/aux_/pop_front_impl.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/preprocessor/add.hpp                                               |    6 
 inst/include/boost/mpl/aux_/preprocessor/def_params_tail.hpp                                   |    6 
 inst/include/boost/mpl/aux_/preprocessor/default_params.hpp                                    |    6 
 inst/include/boost/mpl/aux_/preprocessor/enum.hpp                                              |    6 
 inst/include/boost/mpl/aux_/preprocessor/ext_params.hpp                                        |    6 
 inst/include/boost/mpl/aux_/preprocessor/filter_params.hpp                                     |    6 
 inst/include/boost/mpl/aux_/preprocessor/is_seq.hpp                                            |    6 
 inst/include/boost/mpl/aux_/preprocessor/params.hpp                                            |    6 
 inst/include/boost/mpl/aux_/preprocessor/partial_spec_params.hpp                               |    6 
 inst/include/boost/mpl/aux_/preprocessor/range.hpp                                             |   15 
 inst/include/boost/mpl/aux_/preprocessor/repeat.hpp                                            |    6 
 inst/include/boost/mpl/aux_/preprocessor/sub.hpp                                               |    6 
 inst/include/boost/mpl/aux_/preprocessor/token_equal.hpp                                       |    6 
 inst/include/boost/mpl/aux_/preprocessor/tuple.hpp                                             |    6 
 inst/include/boost/mpl/aux_/ptr_to_ref.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/push_back_impl.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/push_front_impl.hpp                                                |    6 
 inst/include/boost/mpl/aux_/range_c/O1_size.hpp                                                |    6 
 inst/include/boost/mpl/aux_/range_c/back.hpp                                                   |    6 
 inst/include/boost/mpl/aux_/range_c/empty.hpp                                                  |    6 
 inst/include/boost/mpl/aux_/range_c/front.hpp                                                  |    6 
 inst/include/boost/mpl/aux_/range_c/iterator.hpp                                               |    6 
 inst/include/boost/mpl/aux_/range_c/size.hpp                                                   |    6 
 inst/include/boost/mpl/aux_/range_c/tag.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/reverse_fold_impl.hpp                                              |    6 
 inst/include/boost/mpl/aux_/reverse_fold_impl_body.hpp                                         |    6 
 inst/include/boost/mpl/aux_/reverse_iter_fold_impl.hpp                                         |    6 
 inst/include/boost/mpl/aux_/sequence_wrapper.hpp                                               |    6 
 inst/include/boost/mpl/aux_/shift_op.hpp                                                       |    6 
 inst/include/boost/mpl/aux_/single_element_iter.hpp                                            |    6 
 inst/include/boost/mpl/aux_/size_impl.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/sort_impl.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/static_cast.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/template_arity.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/template_arity_fwd.hpp                                             |    6 
 inst/include/boost/mpl/aux_/test.hpp                                                           |    6 
 inst/include/boost/mpl/aux_/test/assert.hpp                                                    |    6 
 inst/include/boost/mpl/aux_/test/data.hpp                                                      |    6 
 inst/include/boost/mpl/aux_/test/test_case.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/traits_lambda_spec.hpp                                             |    6 
 inst/include/boost/mpl/aux_/transform_iter.hpp                                                 |    6 
 inst/include/boost/mpl/aux_/type_wrapper.hpp                                                   |    6 
 inst/include/boost/mpl/aux_/unwrap.hpp                                                         |   10 
 inst/include/boost/mpl/aux_/value_wknd.hpp                                                     |    6 
 inst/include/boost/mpl/aux_/yes_no.hpp                                                         |    6 
 inst/include/boost/mpl/back.hpp                                                                |    6 
 inst/include/boost/mpl/back_fwd.hpp                                                            |    6 
 inst/include/boost/mpl/back_inserter.hpp                                                       |    6 
 inst/include/boost/mpl/base.hpp                                                                |    6 
 inst/include/boost/mpl/begin.hpp                                                               |    6 
 inst/include/boost/mpl/begin_end.hpp                                                           |    6 
 inst/include/boost/mpl/begin_end_fwd.hpp                                                       |    6 
 inst/include/boost/mpl/bind.hpp                                                                |    6 
 inst/include/boost/mpl/bind_fwd.hpp                                                            |    6 
 inst/include/boost/mpl/bitand.hpp                                                              |   10 
 inst/include/boost/mpl/bitor.hpp                                                               |   10 
 inst/include/boost/mpl/bitwise.hpp                                                             |    6 
 inst/include/boost/mpl/bitxor.hpp                                                              |    6 
 inst/include/boost/mpl/bool.hpp                                                                |    8 
 inst/include/boost/mpl/bool_fwd.hpp                                                            |    6 
 inst/include/boost/mpl/clear.hpp                                                               |    6 
 inst/include/boost/mpl/clear_fwd.hpp                                                           |    6 
 inst/include/boost/mpl/comparison.hpp                                                          |    6 
 inst/include/boost/mpl/contains.hpp                                                            |    6 
 inst/include/boost/mpl/contains_fwd.hpp                                                        |    6 
 inst/include/boost/mpl/copy.hpp                                                                |    6 
 inst/include/boost/mpl/copy_if.hpp                                                             |    6 
 inst/include/boost/mpl/count.hpp                                                               |    6 
 inst/include/boost/mpl/count_fwd.hpp                                                           |    6 
 inst/include/boost/mpl/count_if.hpp                                                            |    6 
 inst/include/boost/mpl/deque.hpp                                                               |    6 
 inst/include/boost/mpl/deref.hpp                                                               |    6 
 inst/include/boost/mpl/distance.hpp                                                            |    6 
 inst/include/boost/mpl/distance_fwd.hpp                                                        |    6 
 inst/include/boost/mpl/divides.hpp                                                             |    6 
 inst/include/boost/mpl/empty.hpp                                                               |    6 
 inst/include/boost/mpl/empty_base.hpp                                                          |    6 
 inst/include/boost/mpl/empty_fwd.hpp                                                           |    6 
 inst/include/boost/mpl/empty_sequence.hpp                                                      |    6 
 inst/include/boost/mpl/end.hpp                                                                 |    6 
 inst/include/boost/mpl/equal.hpp                                                               |    6 
 inst/include/boost/mpl/equal_to.hpp                                                            |    6 
 inst/include/boost/mpl/erase.hpp                                                               |    6 
 inst/include/boost/mpl/erase_fwd.hpp                                                           |    6 
 inst/include/boost/mpl/erase_key.hpp                                                           |    6 
 inst/include/boost/mpl/erase_key_fwd.hpp                                                       |    6 
 inst/include/boost/mpl/eval_if.hpp                                                             |   12 
 inst/include/boost/mpl/filter_view.hpp                                                         |    6 
 inst/include/boost/mpl/find.hpp                                                                |    6 
 inst/include/boost/mpl/find_if.hpp                                                             |    6 
 inst/include/boost/mpl/fold.hpp                                                                |    6 
 inst/include/boost/mpl/for_each.hpp                                                            |   15 
 inst/include/boost/mpl/front.hpp                                                               |    6 
 inst/include/boost/mpl/front_fwd.hpp                                                           |    6 
 inst/include/boost/mpl/front_inserter.hpp                                                      |    6 
 inst/include/boost/mpl/greater.hpp                                                             |    6 
 inst/include/boost/mpl/greater_equal.hpp                                                       |    6 
 inst/include/boost/mpl/has_key.hpp                                                             |    6 
 inst/include/boost/mpl/has_key_fwd.hpp                                                         |    6 
 inst/include/boost/mpl/has_xxx.hpp                                                             |   17 
 inst/include/boost/mpl/identity.hpp                                                            |    6 
 inst/include/boost/mpl/if.hpp                                                                  |    6 
 inst/include/boost/mpl/index_if.hpp                                                            |    6 
 inst/include/boost/mpl/index_of.hpp                                                            |    6 
 inst/include/boost/mpl/inherit.hpp                                                             |    6 
 inst/include/boost/mpl/inherit_linearly.hpp                                                    |    6 
 inst/include/boost/mpl/insert.hpp                                                              |    6 
 inst/include/boost/mpl/insert_fwd.hpp                                                          |    6 
 inst/include/boost/mpl/insert_range.hpp                                                        |    6 
 inst/include/boost/mpl/insert_range_fwd.hpp                                                    |    6 
 inst/include/boost/mpl/inserter.hpp                                                            |    6 
 inst/include/boost/mpl/int.hpp                                                                 |    6 
 inst/include/boost/mpl/int_fwd.hpp                                                             |    6 
 inst/include/boost/mpl/integral_c.hpp                                                          |    6 
 inst/include/boost/mpl/integral_c_fwd.hpp                                                      |    6 
 inst/include/boost/mpl/integral_c_tag.hpp                                                      |    6 
 inst/include/boost/mpl/is_placeholder.hpp                                                      |    6 
 inst/include/boost/mpl/is_sequence.hpp                                                         |    6 
 inst/include/boost/mpl/iter_fold.hpp                                                           |    6 
 inst/include/boost/mpl/iter_fold_if.hpp                                                        |    6 
 inst/include/boost/mpl/iterator_category.hpp                                                   |    6 
 inst/include/boost/mpl/iterator_range.hpp                                                      |    6 
 inst/include/boost/mpl/iterator_tags.hpp                                                       |    6 
 inst/include/boost/mpl/joint_view.hpp                                                          |    6 
 inst/include/boost/mpl/key_type.hpp                                                            |    6 
 inst/include/boost/mpl/key_type_fwd.hpp                                                        |    6 
 inst/include/boost/mpl/lambda.hpp                                                              |    6 
 inst/include/boost/mpl/lambda_fwd.hpp                                                          |    6 
 inst/include/boost/mpl/less.hpp                                                                |    6 
 inst/include/boost/mpl/less_equal.hpp                                                          |    6 
 inst/include/boost/mpl/limits/arity.hpp                                                        |    6 
 inst/include/boost/mpl/limits/list.hpp                                                         |    6 
 inst/include/boost/mpl/limits/map.hpp                                                          |    6 
 inst/include/boost/mpl/limits/set.hpp                                                          |    6 
 inst/include/boost/mpl/limits/unrolling.hpp                                                    |    6 
 inst/include/boost/mpl/limits/vector.hpp                                                       |    6 
 inst/include/boost/mpl/list.hpp                                                                |    6 
 inst/include/boost/mpl/list/aux_/O1_size.hpp                                                   |    6 
 inst/include/boost/mpl/list/aux_/begin_end.hpp                                                 |    6 
 inst/include/boost/mpl/list/aux_/clear.hpp                                                     |    6 
 inst/include/boost/mpl/list/aux_/empty.hpp                                                     |    6 
 inst/include/boost/mpl/list/aux_/front.hpp                                                     |    6 
 inst/include/boost/mpl/list/aux_/include_preprocessed.hpp                                      |    6 
 inst/include/boost/mpl/list/aux_/item.hpp                                                      |    6 
 inst/include/boost/mpl/list/aux_/iterator.hpp                                                  |    6 
 inst/include/boost/mpl/list/aux_/numbered.hpp                                                  |    6 
 inst/include/boost/mpl/list/aux_/numbered_c.hpp                                                |    6 
 inst/include/boost/mpl/list/aux_/pop_front.hpp                                                 |    6 
 inst/include/boost/mpl/list/aux_/push_back.hpp                                                 |    6 
 inst/include/boost/mpl/list/aux_/push_front.hpp                                                |    6 
 inst/include/boost/mpl/list/aux_/size.hpp                                                      |    6 
 inst/include/boost/mpl/list/aux_/tag.hpp                                                       |    6 
 inst/include/boost/mpl/list/list0.hpp                                                          |    6 
 inst/include/boost/mpl/list/list0_c.hpp                                                        |    6 
 inst/include/boost/mpl/list/list10.hpp                                                         |    6 
 inst/include/boost/mpl/list/list10_c.hpp                                                       |    6 
 inst/include/boost/mpl/list/list20.hpp                                                         |    6 
 inst/include/boost/mpl/list/list20_c.hpp                                                       |    6 
 inst/include/boost/mpl/list/list30.hpp                                                         |    6 
 inst/include/boost/mpl/list/list30_c.hpp                                                       |    6 
 inst/include/boost/mpl/list/list40.hpp                                                         |    6 
 inst/include/boost/mpl/list/list40_c.hpp                                                       |    6 
 inst/include/boost/mpl/list/list50.hpp                                                         |    6 
 inst/include/boost/mpl/list/list50_c.hpp                                                       |    6 
 inst/include/boost/mpl/list_c.hpp                                                              |    6 
 inst/include/boost/mpl/logical.hpp                                                             |    6 
 inst/include/boost/mpl/long.hpp                                                                |    6 
 inst/include/boost/mpl/long_fwd.hpp                                                            |    6 
 inst/include/boost/mpl/lower_bound.hpp                                                         |    6 
 inst/include/boost/mpl/map.hpp                                                                 |    6 
 inst/include/boost/mpl/map/aux_/at_impl.hpp                                                    |    6 
 inst/include/boost/mpl/map/aux_/begin_end_impl.hpp                                             |    6 
 inst/include/boost/mpl/map/aux_/clear_impl.hpp                                                 |    6 
 inst/include/boost/mpl/map/aux_/contains_impl.hpp                                              |    6 
 inst/include/boost/mpl/map/aux_/empty_impl.hpp                                                 |    6 
 inst/include/boost/mpl/map/aux_/erase_impl.hpp                                                 |    6 
 inst/include/boost/mpl/map/aux_/erase_key_impl.hpp                                             |    6 
 inst/include/boost/mpl/map/aux_/has_key_impl.hpp                                               |    6 
 inst/include/boost/mpl/map/aux_/include_preprocessed.hpp                                       |    6 
 inst/include/boost/mpl/map/aux_/insert_impl.hpp                                                |    6 
 inst/include/boost/mpl/map/aux_/item.hpp                                                       |    6 
 inst/include/boost/mpl/map/aux_/iterator.hpp                                                   |    6 
 inst/include/boost/mpl/map/aux_/key_type_impl.hpp                                              |    6 
 inst/include/boost/mpl/map/aux_/map0.hpp                                                       |    6 
 inst/include/boost/mpl/map/aux_/numbered.hpp                                                   |    6 
 inst/include/boost/mpl/map/aux_/size_impl.hpp                                                  |    6 
 inst/include/boost/mpl/map/aux_/tag.hpp                                                        |    6 
 inst/include/boost/mpl/map/aux_/value_type_impl.hpp                                            |    6 
 inst/include/boost/mpl/map/map0.hpp                                                            |    6 
 inst/include/boost/mpl/map/map10.hpp                                                           |    6 
 inst/include/boost/mpl/map/map20.hpp                                                           |    6 
 inst/include/boost/mpl/map/map30.hpp                                                           |    6 
 inst/include/boost/mpl/map/map40.hpp                                                           |    6 
 inst/include/boost/mpl/map/map50.hpp                                                           |    6 
 inst/include/boost/mpl/math/fixed_c.hpp                                                        |    6 
 inst/include/boost/mpl/math/is_even.hpp                                                        |    6 
 inst/include/boost/mpl/math/rational_c.hpp                                                     |    6 
 inst/include/boost/mpl/max.hpp                                                                 |    6 
 inst/include/boost/mpl/max_element.hpp                                                         |    6 
 inst/include/boost/mpl/min.hpp                                                                 |    6 
 inst/include/boost/mpl/min_element.hpp                                                         |    6 
 inst/include/boost/mpl/min_max.hpp                                                             |    6 
 inst/include/boost/mpl/minus.hpp                                                               |    6 
 inst/include/boost/mpl/modulus.hpp                                                             |    6 
 inst/include/boost/mpl/multiplies.hpp                                                          |    6 
 inst/include/boost/mpl/multiset/aux_/count_impl.hpp                                            |    6 
 inst/include/boost/mpl/multiset/aux_/insert_impl.hpp                                           |    6 
 inst/include/boost/mpl/multiset/aux_/item.hpp                                                  |    6 
 inst/include/boost/mpl/multiset/aux_/multiset0.hpp                                             |    6 
 inst/include/boost/mpl/multiset/aux_/tag.hpp                                                   |    6 
 inst/include/boost/mpl/multiset/multiset0.hpp                                                  |    6 
 inst/include/boost/mpl/negate.hpp                                                              |    6 
 inst/include/boost/mpl/next.hpp                                                                |    6 
 inst/include/boost/mpl/next_prior.hpp                                                          |    6 
 inst/include/boost/mpl/not.hpp                                                                 |    6 
 inst/include/boost/mpl/not_equal_to.hpp                                                        |    6 
 inst/include/boost/mpl/numeric_cast.hpp                                                        |    6 
 inst/include/boost/mpl/or.hpp                                                                  |   10 
 inst/include/boost/mpl/order.hpp                                                               |    6 
 inst/include/boost/mpl/order_fwd.hpp                                                           |    6 
 inst/include/boost/mpl/pair.hpp                                                                |    6 
 inst/include/boost/mpl/pair_view.hpp                                                           |    6 
 inst/include/boost/mpl/partition.hpp                                                           |    6 
 inst/include/boost/mpl/placeholders.hpp                                                        |    6 
 inst/include/boost/mpl/plus.hpp                                                                |    6 
 inst/include/boost/mpl/pop_back.hpp                                                            |    6 
 inst/include/boost/mpl/pop_back_fwd.hpp                                                        |    6 
 inst/include/boost/mpl/pop_front.hpp                                                           |    6 
 inst/include/boost/mpl/pop_front_fwd.hpp                                                       |    6 
 inst/include/boost/mpl/print.hpp                                                               |   13 
 inst/include/boost/mpl/prior.hpp                                                               |    6 
 inst/include/boost/mpl/protect.hpp                                                             |    6 
 inst/include/boost/mpl/push_back.hpp                                                           |    6 
 inst/include/boost/mpl/push_back_fwd.hpp                                                       |    6 
 inst/include/boost/mpl/push_front.hpp                                                          |    6 
 inst/include/boost/mpl/push_front_fwd.hpp                                                      |    6 
 inst/include/boost/mpl/quote.hpp                                                               |    6 
 inst/include/boost/mpl/range_c.hpp                                                             |    6 
 inst/include/boost/mpl/remove.hpp                                                              |    6 
 inst/include/boost/mpl/remove_if.hpp                                                           |    6 
 inst/include/boost/mpl/replace.hpp                                                             |    6 
 inst/include/boost/mpl/replace_if.hpp                                                          |    6 
 inst/include/boost/mpl/reverse.hpp                                                             |    6 
 inst/include/boost/mpl/reverse_fold.hpp                                                        |    6 
 inst/include/boost/mpl/reverse_iter_fold.hpp                                                   |    6 
 inst/include/boost/mpl/same_as.hpp                                                             |    6 
 inst/include/boost/mpl/sequence_tag.hpp                                                        |    6 
 inst/include/boost/mpl/sequence_tag_fwd.hpp                                                    |    6 
 inst/include/boost/mpl/set.hpp                                                                 |    6 
 inst/include/boost/mpl/set/aux_/at_impl.hpp                                                    |    6 
 inst/include/boost/mpl/set/aux_/begin_end_impl.hpp                                             |    6 
 inst/include/boost/mpl/set/aux_/clear_impl.hpp                                                 |    6 
 inst/include/boost/mpl/set/aux_/empty_impl.hpp                                                 |    6 
 inst/include/boost/mpl/set/aux_/erase_impl.hpp                                                 |    6 
 inst/include/boost/mpl/set/aux_/erase_key_impl.hpp                                             |    6 
 inst/include/boost/mpl/set/aux_/has_key_impl.hpp                                               |    6 
 inst/include/boost/mpl/set/aux_/include_preprocessed.hpp                                       |    6 
 inst/include/boost/mpl/set/aux_/insert_impl.hpp                                                |    6 
 inst/include/boost/mpl/set/aux_/item.hpp                                                       |   12 
 inst/include/boost/mpl/set/aux_/iterator.hpp                                                   |    6 
 inst/include/boost/mpl/set/aux_/key_type_impl.hpp                                              |    6 
 inst/include/boost/mpl/set/aux_/numbered.hpp                                                   |    6 
 inst/include/boost/mpl/set/aux_/numbered_c.hpp                                                 |    6 
 inst/include/boost/mpl/set/aux_/set0.hpp                                                       |    6 
 inst/include/boost/mpl/set/aux_/size_impl.hpp                                                  |    6 
 inst/include/boost/mpl/set/aux_/tag.hpp                                                        |    6 
 inst/include/boost/mpl/set/aux_/value_type_impl.hpp                                            |    6 
 inst/include/boost/mpl/set/set0.hpp                                                            |    6 
 inst/include/boost/mpl/set/set0_c.hpp                                                          |    6 
 inst/include/boost/mpl/set/set10.hpp                                                           |    6 
 inst/include/boost/mpl/set/set10_c.hpp                                                         |    6 
 inst/include/boost/mpl/set/set20.hpp                                                           |    6 
 inst/include/boost/mpl/set/set20_c.hpp                                                         |    6 
 inst/include/boost/mpl/set/set30.hpp                                                           |    6 
 inst/include/boost/mpl/set/set30_c.hpp                                                         |    6 
 inst/include/boost/mpl/set/set40.hpp                                                           |    6 
 inst/include/boost/mpl/set/set40_c.hpp                                                         |    6 
 inst/include/boost/mpl/set/set50.hpp                                                           |    6 
 inst/include/boost/mpl/set/set50_c.hpp                                                         |    6 
 inst/include/boost/mpl/set_c.hpp                                                               |    6 
 inst/include/boost/mpl/shift_left.hpp                                                          |    6 
 inst/include/boost/mpl/shift_right.hpp                                                         |    6 
 inst/include/boost/mpl/single_view.hpp                                                         |    6 
 inst/include/boost/mpl/size.hpp                                                                |    6 
 inst/include/boost/mpl/size_fwd.hpp                                                            |    6 
 inst/include/boost/mpl/size_t.hpp                                                              |    6 
 inst/include/boost/mpl/size_t_fwd.hpp                                                          |    6 
 inst/include/boost/mpl/sizeof.hpp                                                              |    6 
 inst/include/boost/mpl/sort.hpp                                                                |    6 
 inst/include/boost/mpl/stable_partition.hpp                                                    |    6 
 inst/include/boost/mpl/string.hpp                                                              |    4 
 inst/include/boost/mpl/switch.hpp                                                              |    6 
 inst/include/boost/mpl/tag.hpp                                                                 |    6 
 inst/include/boost/mpl/times.hpp                                                               |    6 
 inst/include/boost/mpl/transform.hpp                                                           |    6 
 inst/include/boost/mpl/transform_view.hpp                                                      |    6 
 inst/include/boost/mpl/unique.hpp                                                              |    6 
 inst/include/boost/mpl/unpack_args.hpp                                                         |    6 
 inst/include/boost/mpl/upper_bound.hpp                                                         |    6 
 inst/include/boost/mpl/value_type.hpp                                                          |    6 
 inst/include/boost/mpl/value_type_fwd.hpp                                                      |    6 
 inst/include/boost/mpl/vector.hpp                                                              |    6 
 inst/include/boost/mpl/vector/aux_/O1_size.hpp                                                 |    6 
 inst/include/boost/mpl/vector/aux_/at.hpp                                                      |    6 
 inst/include/boost/mpl/vector/aux_/back.hpp                                                    |    6 
 inst/include/boost/mpl/vector/aux_/begin_end.hpp                                               |    6 
 inst/include/boost/mpl/vector/aux_/clear.hpp                                                   |    6 
 inst/include/boost/mpl/vector/aux_/empty.hpp                                                   |    6 
 inst/include/boost/mpl/vector/aux_/front.hpp                                                   |    6 
 inst/include/boost/mpl/vector/aux_/include_preprocessed.hpp                                    |    6 
 inst/include/boost/mpl/vector/aux_/item.hpp                                                    |    6 
 inst/include/boost/mpl/vector/aux_/iterator.hpp                                                |    6 
 inst/include/boost/mpl/vector/aux_/numbered.hpp                                                |    6 
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 inst/include/boost/mpl/vector/aux_/size.hpp                                                    |    6 
 inst/include/boost/mpl/vector/aux_/tag.hpp                                                     |    6 
 inst/include/boost/mpl/vector/aux_/vector0.hpp                                                 |    6 
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 inst/include/boost/mpl/vector/vector0_c.hpp                                                    |    6 
 inst/include/boost/mpl/vector/vector10.hpp                                                     |    6 
 inst/include/boost/mpl/vector/vector10_c.hpp                                                   |    6 
 inst/include/boost/mpl/vector/vector20.hpp                                                     |    6 
 inst/include/boost/mpl/vector/vector20_c.hpp                                                   |    6 
 inst/include/boost/mpl/vector/vector30.hpp                                                     |    6 
 inst/include/boost/mpl/vector/vector30_c.hpp                                                   |    6 
 inst/include/boost/mpl/vector/vector40.hpp                                                     |    6 
 inst/include/boost/mpl/vector/vector40_c.hpp                                                   |    6 
 inst/include/boost/mpl/vector/vector50.hpp                                                     |    6 
 inst/include/boost/mpl/vector/vector50_c.hpp                                                   |    6 
 inst/include/boost/mpl/vector_c.hpp                                                            |    6 
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 inst/include/boost/multi_index/hashed_index_fwd.hpp                                            |   20 
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 inst/include/boost/multi_index/identity_fwd.hpp                                                |    4 
 inst/include/boost/multi_index/indexed_by.hpp                                                  |    8 
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 inst/include/boost/noncopyable.hpp                                                             |   55 
 inst/include/boost/none.hpp                                                                    |   25 
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 inst/include/boost/numeric/odeint/stepper/generation/generation_runge_kutta_dopri5.hpp         |    4 
 inst/include/boost/numeric/odeint/stepper/generation/generation_runge_kutta_fehlberg78.hpp     |    4 
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 inst/include/boost/numeric/odeint/stepper/stepper_categories.hpp                               |    4 
 inst/include/boost/numeric/odeint/stepper/symplectic_euler.hpp                                 |   10 
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 inst/include/boost/numeric/odeint/version.hpp                                                  |    4 
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 inst/include/boost/numeric/ublas/banded.hpp                                                    |  329 
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 inst/include/boost/numeric/ublas/fwd.hpp                                                       |   12 
 inst/include/boost/numeric/ublas/hermitian.hpp                                                 |  176 
 inst/include/boost/numeric/ublas/lu.hpp                                                        |   15 
 inst/include/boost/numeric/ublas/matrix.hpp                                                    | 1688 ++
 inst/include/boost/numeric/ublas/matrix_expression.hpp                                         |  683 
 inst/include/boost/numeric/ublas/matrix_proxy.hpp                                              |  344 
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 inst/include/boost/numeric/ublas/storage.hpp                                                   |  181 
 inst/include/boost/numeric/ublas/storage_sparse.hpp                                            |   17 
 inst/include/boost/numeric/ublas/symmetric.hpp                                                 |  177 
 inst/include/boost/numeric/ublas/traits.hpp                                                    |  193 
 inst/include/boost/numeric/ublas/triangular.hpp                                                |  187 
 inst/include/boost/numeric/ublas/vector.hpp                                                    |  901 +
 inst/include/boost/numeric/ublas/vector_expression.hpp                                         |   81 
 inst/include/boost/numeric/ublas/vector_of_vector.hpp                                          |   89 
 inst/include/boost/numeric/ublas/vector_proxy.hpp                                              |   54 
 inst/include/boost/numeric/ublas/vector_sparse.hpp                                             |   48 
 inst/include/boost/operators.hpp                                                               |   32 
 inst/include/boost/optional/bad_optional_access.hpp                                            |only
 inst/include/boost/optional/optional.hpp                                                       |  704 
 inst/include/boost/optional/optional_fwd.hpp                                                   |    5 
 inst/include/boost/optional/optional_io.hpp                                                    |   48 
 inst/include/boost/pending/container_traits.hpp                                                |  145 
 inst/include/boost/pending/detail/int_iterator.hpp                                             |   11 
 inst/include/boost/pending/integer_log2.hpp                                                    |  113 
 inst/include/boost/pending/iterator_tests.hpp                                                  |   30 
 inst/include/boost/pending/relaxed_heap.hpp                                                    |    2 
 inst/include/boost/phoenix/bind.hpp                                                            |    4 
 inst/include/boost/phoenix/bind/bind_member_function.hpp                                       |   25 
 inst/include/boost/phoenix/bind/bind_member_variable.hpp                                       |   23 
 inst/include/boost/phoenix/bind/detail/function_ptr.hpp                                        |   18 
 inst/include/boost/phoenix/bind/detail/member_function_ptr.hpp                                 |   14 
 inst/include/boost/phoenix/bind/detail/member_variable.hpp                                     |   16 
 inst/include/boost/phoenix/bind/detail/preprocessed/function_ptr_10.hpp                        |   36 
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 inst/include/boost/phoenix/config.hpp                                                          |only
 inst/include/boost/phoenix/core.hpp                                                            |    7 
 inst/include/boost/phoenix/core/actor.hpp                                                      |   60 
 inst/include/boost/phoenix/core/debug.hpp                                                      |only
 inst/include/boost/phoenix/core/detail/expression.hpp                                          |    6 
 inst/include/boost/phoenix/core/detail/phx2_result.hpp                                         |    6 
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 inst/include/boost/phoenix/core/detail/preprocessed/function_eval_50.hpp                       |    2 
 inst/include/boost/phoenix/core/domain.hpp                                                     |   20 
 inst/include/boost/phoenix/core/environment.hpp                                                |   57 
 inst/include/boost/phoenix/core/expression.hpp                                                 |    9 
 inst/include/boost/phoenix/core/function_equal.hpp                                             |   11 
 inst/include/boost/phoenix/core/is_actor.hpp                                                   |    3 
 inst/include/boost/phoenix/core/is_nullary.hpp                                                 |    4 
 inst/include/boost/phoenix/core/is_value.hpp                                                   |only
 inst/include/boost/phoenix/core/limits.hpp                                                     |    8 
 inst/include/boost/phoenix/core/nothing.hpp                                                    |    1 
 inst/include/boost/phoenix/core/preprocessed/actor_10.hpp                                      |    5 
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 inst/include/boost/phoenix/core/preprocessed/actor_30.hpp                                      |    5 
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 inst/include/boost/phoenix/core/preprocessed/function_equal_50.hpp                             |    8 
 inst/include/boost/phoenix/core/reference.hpp                                                  |    6 
 inst/include/boost/phoenix/core/terminal.hpp                                                   |    9 
 inst/include/boost/phoenix/core/value.hpp                                                      |   41 
 inst/include/boost/phoenix/core/visit_each.hpp                                                 |    2 
 inst/include/boost/phoenix/function/adapt_callable.hpp                                         |    6 
 inst/include/boost/phoenix/function/adapt_function.hpp                                         |   24 
 inst/include/boost/phoenix/function/function.hpp                                               |   14 
 inst/include/boost/phoenix/fusion.hpp                                                          |    4 
 inst/include/boost/phoenix/object.hpp                                                          |    4 
 inst/include/boost/phoenix/operator.hpp                                                        |    1 
 inst/include/boost/phoenix/operator/arithmetic.hpp                                             |    1 
 inst/include/boost/phoenix/operator/comparison.hpp                                             |    1 
 inst/include/boost/phoenix/operator/detail/define_operator.hpp                                 |    6 
 inst/include/boost/phoenix/operator/detail/mem_fun_ptr_gen.hpp                                 |    6 
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 inst/include/boost/phoenix/operator/preprocessed/member_10.hpp                                 |    2 
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 inst/include/boost/phoenix/operator/preprocessed/member_50.hpp                                 |    2 
 inst/include/boost/phoenix/phoenix.hpp                                                         |    1 
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 inst/include/boost/phoenix/scope/scoped_environment.hpp                                        |   20 
 inst/include/boost/phoenix/statement.hpp                                                       |    4 
 inst/include/boost/phoenix/statement/do_while.hpp                                              |    8 
 inst/include/boost/phoenix/statement/for.hpp                                                   |   12 
 inst/include/boost/phoenix/statement/if.hpp                                                    |   12 
 inst/include/boost/phoenix/statement/sequence.hpp                                              |    1 
 inst/include/boost/phoenix/statement/switch.hpp                                                |    2 
 inst/include/boost/phoenix/statement/throw.hpp                                                 |    3 
 inst/include/boost/phoenix/statement/try_catch.hpp                                             |    4 
 inst/include/boost/phoenix/statement/while.hpp                                                 |   10 
 inst/include/boost/phoenix/stl.hpp                                                             |    4 
 inst/include/boost/phoenix/stl/algorithm/detail/has_equal_range.hpp                            |    2 
 inst/include/boost/phoenix/stl/algorithm/detail/has_lower_bound.hpp                            |    2 
 inst/include/boost/phoenix/stl/algorithm/detail/has_remove_if.hpp                              |    2 
 inst/include/boost/phoenix/stl/algorithm/detail/has_reverse.hpp                                |    2 
 inst/include/boost/phoenix/stl/algorithm/detail/has_unique.hpp                                 |    2 
 inst/include/boost/phoenix/stl/algorithm/detail/is_std_set.hpp                                 |    2 
 inst/include/boost/phoenix/stl/algorithm/detail/std_hash_map_fwd.hpp                           |    4 
 inst/include/boost/phoenix/stl/algorithm/detail/std_hash_set_fwd.hpp                           |    2 
 inst/include/boost/phoenix/support/vector.hpp                                                  |   10 
 inst/include/boost/phoenix/version.hpp                                                         |   18 
 inst/include/boost/pointee.hpp                                                                 |   16 
 inst/include/boost/polygon/detail/iterator_compact_to_points.hpp                               |   10 
 inst/include/boost/polygon/detail/max_cover.hpp                                                |    2 
 inst/include/boost/polygon/detail/polygon_arbitrary_formation.hpp                              |    3 
 inst/include/boost/polygon/detail/polygon_set_view.hpp                                         |    2 
 inst/include/boost/polygon/detail/scan_arbitrary.hpp                                           |    7 
 inst/include/boost/polygon/interval_concept.hpp                                                |    1 
 inst/include/boost/polygon/point_data.hpp                                                      |    8 
 inst/include/boost/polygon/polygon_90_set_concept.hpp                                          |    1 
 inst/include/boost/polygon/polygon_set_data.hpp                                                |   57 
 inst/include/boost/polygon/polygon_traits.hpp                                                  |   59 
 inst/include/boost/polygon/rectangle_concept.hpp                                               |   12 
 inst/include/boost/polygon/rectangle_traits.hpp                                                |    3 
 inst/include/boost/polygon/segment_utils.hpp                                                   |    7 
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 inst/include/boost/predef/os/bsd/free.h                                                        |    4 
 inst/include/boost/predef/os/bsd/net.h                                                         |    4 
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 inst/include/boost/preprocessor/tuple/to_array.hpp                                             |    4 
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 inst/include/boost/program_options/errors.hpp                                                  |   15 
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 inst/include/boost/progress.hpp                                                                |   12 
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 inst/include/boost/property_map/vector_property_map.hpp                                        |   90 
 inst/include/boost/property_tree/detail/ptree_implementation.hpp                               |   21 
 inst/include/boost/property_tree/detail/ptree_utils.hpp                                        |   31 
 inst/include/boost/property_tree/detail/xml_parser_read_rapidxml.hpp                           |   15 
 inst/include/boost/property_tree/detail/xml_parser_utils.hpp                                   |   73 
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 inst/include/boost/property_tree/ptree.hpp                                                     |    2 
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 inst/include/boost/property_tree/string_path.hpp                                               |    2 
 inst/include/boost/property_tree/xml_parser.hpp                                                |    9 
 inst/include/boost/proto/detail/as_expr.hpp                                                    |    4 
 inst/include/boost/proto/detail/as_lvalue.hpp                                                  |    4 
 inst/include/boost/proto/detail/decltype.hpp                                                   |    4 
 inst/include/boost/proto/detail/ignore_unused.hpp                                              |    4 
 inst/include/boost/proto/domain.hpp                                                            |    4 
 inst/include/boost/proto/expr.hpp                                                              |    4 
 inst/include/boost/proto/extends.hpp                                                           |    4 
 inst/include/boost/proto/generate.hpp                                                          |    4 
 inst/include/boost/proto/make_expr.hpp                                                         |    4 
 inst/include/boost/proto/matches.hpp                                                           |    4 
 inst/include/boost/proto/operators.hpp                                                         |    4 
 inst/include/boost/proto/proto_fwd.hpp                                                         |    2 
 inst/include/boost/proto/traits.hpp                                                            |    4 
 inst/include/boost/proto/transform/call.hpp                                                    |    4 
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 inst/include/boost/proto/transform/impl.hpp                                                    |    4 
 inst/include/boost/proto/transform/make.hpp                                                    |    4 
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 inst/include/boost/proto/transform/when.hpp                                                    |    4 
 inst/include/boost/python/exception_translator.hpp                                             |    1 
 inst/include/boost/random.hpp                                                                  |    3 
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 inst/include/boost/random/detail/auto_link.hpp                                                 |    2 
 inst/include/boost/random/detail/config.hpp                                                    |    2 
 inst/include/boost/random/detail/const_mod.hpp                                                 |   20 
 inst/include/boost/random/detail/disable_warnings.hpp                                          |    8 
 inst/include/boost/random/detail/enable_warnings.hpp                                           |    6 
 inst/include/boost/random/detail/generator_bits.hpp                                            |    2 
 inst/include/boost/random/detail/generator_seed_seq.hpp                                        |    2 
 inst/include/boost/random/detail/integer_log2.hpp                                              |    4 
 inst/include/boost/random/detail/large_arithmetic.hpp                                          |   10 
 inst/include/boost/random/detail/operators.hpp                                                 |    2 
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 inst/include/boost/random/detail/ptr_helper.hpp                                                |   29 
 inst/include/boost/random/detail/seed.hpp                                                      |    3 
 inst/include/boost/random/detail/seed_impl.hpp                                                 |   23 
 inst/include/boost/random/detail/uniform_int_float.hpp                                         |    2 
 inst/include/boost/random/detail/vector_io.hpp                                                 |    2 
 inst/include/boost/random/discard_block.hpp                                                    |    5 
 inst/include/boost/random/discrete_distribution.hpp                                            |  285 
 inst/include/boost/random/exponential_distribution.hpp                                         |    2 
 inst/include/boost/random/extreme_value_distribution.hpp                                       |    2 
 inst/include/boost/random/fisher_f_distribution.hpp                                            |    2 
 inst/include/boost/random/gamma_distribution.hpp                                               |    2 
 inst/include/boost/random/generate_canonical.hpp                                               |    5 
 inst/include/boost/random/geometric_distribution.hpp                                           |    6 
 inst/include/boost/random/independent_bits.hpp                                                 |    2 
 inst/include/boost/random/inversive_congruential.hpp                                           |    2 
 inst/include/boost/random/lagged_fibonacci.hpp                                                 |   57 
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 inst/include/boost/random/linear_congruential.hpp                                              |    2 
 inst/include/boost/random/linear_feedback_shift.hpp                                            |    2 
 inst/include/boost/random/lognormal_distribution.hpp                                           |    2 
 inst/include/boost/random/mersenne_twister.hpp                                                 |  211 
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 inst/include/boost/random/piecewise_constant_distribution.hpp                                  |    2 
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 inst/include/boost/random/poisson_distribution.hpp                                             |    2 
 inst/include/boost/random/random_device.hpp                                                    |    3 
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 inst/include/boost/random/seed_seq.hpp                                                         |    2 
 inst/include/boost/random/shuffle_order.hpp                                                    |    4 
 inst/include/boost/random/shuffle_output.hpp                                                   |    8 
 inst/include/boost/random/student_t_distribution.hpp                                           |    2 
 inst/include/boost/random/subtract_with_carry.hpp                                              |    2 
 inst/include/boost/random/taus88.hpp                                                           |    2 
 inst/include/boost/random/triangle_distribution.hpp                                            |    2 
 inst/include/boost/random/uniform_01.hpp                                                       |    4 
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 inst/include/boost/random/uniform_real.hpp                                                     |    4 
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 inst/include/boost/random/uniform_smallint.hpp                                                 |    3 
 inst/include/boost/random/variate_generator.hpp                                                |    2 
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 inst/include/boost/random/xor_combine.hpp                                                      |    3 
 inst/include/boost/range.hpp                                                                   |   12 
 inst/include/boost/range/adaptor/adjacent_filtered.hpp                                         |   41 
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 inst/include/boost/range/adaptor/replaced.hpp                                                  |   87 
 inst/include/boost/range/adaptor/replaced_if.hpp                                               |   93 
 inst/include/boost/range/adaptor/reversed.hpp                                                  |   31 
 inst/include/boost/range/adaptor/sliced.hpp                                                    |   16 
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 inst/include/boost/range/adaptor/type_erased.hpp                                               |   14 
 inst/include/boost/range/adaptor/uniqued.hpp                                                   |    7 
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 inst/include/boost/range/algorithm.hpp                                                         |    2 
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 inst/include/boost/range/algorithm/for_each.hpp                                                |    2 
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 inst/include/boost/range/algorithm/unique.hpp                                                  |    4 
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 inst/include/boost/range/algorithm_ext/push_back.hpp                                           |    5 
 inst/include/boost/range/algorithm_ext/push_front.hpp                                          |    5 
 inst/include/boost/range/any_range.hpp                                                         |    5 
 inst/include/boost/range/as_array.hpp                                                          |    2 
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 inst/include/boost/range/atl.hpp                                                               |    9 
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 inst/include/boost/range/detail/any_iterator_interface.hpp                                     |   29 
 inst/include/boost/range/detail/any_iterator_wrapper.hpp                                       |   74 
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 inst/include/boost/range/distance.hpp                                                          |    2 
 inst/include/boost/range/empty.hpp                                                             |    2 
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 inst/include/boost/range/has_range_iterator.hpp                                                |   29 
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 inst/include/boost/range/reverse_result_iterator.hpp                                           |    2 
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 inst/include/boost/ratio/detail/mpl/abs.hpp                                                    |    8 
 inst/include/boost/ratio/detail/mpl/gcd.hpp                                                    |    2 
 inst/include/boost/ratio/detail/mpl/lcm.hpp                                                    |    2 
 inst/include/boost/ratio/detail/mpl/sign.hpp                                                   |    8 
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 inst/include/boost/regex/config.hpp                                                            |    2 
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 inst/include/boost/regex/v4/basic_regex.hpp                                                    |    6 
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 inst/include/boost/regex/v4/cpp_regex_traits.hpp                                               |   56 
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 inst/include/boost/regex/v4/match_results.hpp                                                  |    9 
 inst/include/boost/regex/v4/perl_matcher.hpp                                                   |   13 
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 inst/include/boost/regex/v4/regex_format.hpp                                                   |    2 
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 inst/include/boost/regex/v4/regex_token_iterator.hpp                                           |   15 
 inst/include/boost/regex/v4/regex_traits.hpp                                                   |    4 
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 inst/include/boost/regex/v4/sub_match.hpp                                                      |    3 
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 inst/include/boost/serialization/version.hpp                                                   |    6 
 inst/include/boost/serialization/void_cast.hpp                                                 |   12 
 inst/include/boost/serialization/void_cast_fwd.hpp                                             |    2 
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 inst/include/boost/smart_ptr/intrusive_ptr.hpp                                                 |   12 
 inst/include/boost/smart_ptr/make_shared_array.hpp                                             |  261 
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 inst/include/boost/spirit/home/qi.hpp                                                          |    1 
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 inst/include/boost/spirit/home/qi/directive/skip.hpp                                           |   14 
 inst/include/boost/spirit/home/qi/nonterminal/rule.hpp                                         |    1 
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 inst/include/boost/spirit/home/qi/operator/optional.hpp                                        |    4 
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 inst/include/boost/spirit/home/qi/stream/stream.hpp                                            |    8 
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 inst/include/boost/spirit/home/support/argument_expression.hpp                                 |   26 
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 inst/include/boost/spirit/home/support/char_encoding/ascii.hpp                                 |   40 
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 inst/include/boost/spirit/home/support/char_encoding/unicode.hpp                               |    2 
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 inst/include/boost/spirit/home/support/extended_variant.hpp                                    |   41 
 inst/include/boost/spirit/home/support/info.hpp                                                |    8 
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 inst/include/boost/spirit/home/support/make_component.hpp                                      |   29 
 inst/include/boost/spirit/home/support/numeric_traits.hpp                                      |   14 
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 inst/include/boost/spirit/home/support/terminal_expression.hpp                                 |   63 
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 inst/include/boost/spirit/home/x3                                                              |only
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 inst/include/boost/spirit/repository/home/qi/operator/detail/keywords.hpp                      |  110 
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 inst/include/boost/swap.hpp                                                                    |   17 
 inst/include/boost/system/config.hpp                                                           |    1 
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 inst/include/boost/system/error_code.hpp                                                       |    3 
 inst/include/boost/test/auto_unit_test.hpp                                                     |    2 
 inst/include/boost/test/debug.hpp                                                              |    2 
 inst/include/boost/test/debug_config.hpp                                                       |    2 
 inst/include/boost/test/detail/config.hpp                                                      |    2 
 inst/include/boost/test/detail/enable_warnings.hpp                                             |    2 
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 inst/include/boost/thread/pthread/recursive_mutex.hpp                                          |   19 
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 inst/include/boost/thread/tss.hpp                                                              |   16 
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 inst/include/boost/throw_exception.hpp                                                         |    5 
 inst/include/boost/timer/timer.hpp                                                             |   18 
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 inst/include/boost/type_traits/common_type.hpp                                                 |    2 
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 inst/include/boost/type_traits/type_with_alignment.hpp                                         |  120 
 inst/include/boost/units/config.hpp                                                            |    9 
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 inst/include/boost/units/io.hpp                                                                |    4 
 inst/include/boost/units/quantity.hpp                                                          |    2 
 inst/include/boost/units/scale.hpp                                                             |    4 
 inst/include/boost/units/static_rational.hpp                                                   |    6 
 inst/include/boost/units/units_fwd.hpp                                                         |    2 
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 inst/include/boost/unordered/detail/extract_key.hpp                                            |    5 
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 inst/include/boost/unordered_map.hpp                                                           |    5 
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 inst/include/boost/utility/base_from_member.hpp                                                |   13 
 inst/include/boost/utility/empty_deleter.hpp                                                   |   26 
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 inst/include/boost/utility/explicit_operator_bool.hpp                                          |  129 
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 inst/include/boost/utility/value_init.hpp                                                      |   29 
 inst/include/boost/uuid/detail                                                                 |only
 inst/include/boost/uuid/name_generator.hpp                                                     |   20 
 inst/include/boost/uuid/uuid.hpp                                                               |   83 
 inst/include/boost/uuid/uuid_io.hpp                                                            |    2 
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 inst/include/boost/variant/visitor_ptr.hpp                                                     |    2 
 inst/include/boost/version.hpp                                                                 |   12 
 inst/include/boost/visit_each.hpp                                                              |    2 
 inst/include/boost/xpressive/basic_regex.hpp                                                   |    2 
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 inst/include/boost/xpressive/detail/core/matcher/true_matcher.hpp                              |    2 
 inst/include/boost/xpressive/detail/core/matchers.hpp                                          |    2 
 inst/include/boost/xpressive/detail/core/peeker.hpp                                            |    2 
 inst/include/boost/xpressive/detail/core/quant_style.hpp                                       |    2 
 inst/include/boost/xpressive/detail/core/regex_impl.hpp                                        |    2 
 inst/include/boost/xpressive/detail/core/results_cache.hpp                                     |    2 
 inst/include/boost/xpressive/detail/core/state.hpp                                             |    2 
 inst/include/boost/xpressive/detail/core/sub_match_impl.hpp                                    |    2 
 inst/include/boost/xpressive/detail/core/sub_match_vector.hpp                                  |    2 
 inst/include/boost/xpressive/detail/detail_fwd.hpp                                             |    2 
 inst/include/boost/xpressive/detail/dynamic/matchable.hpp                                      |    2 
 inst/include/boost/xpressive/detail/dynamic/sequence.hpp                                       |    2 
 inst/include/boost/xpressive/detail/static/compile.hpp                                         |    2 
 inst/include/boost/xpressive/detail/static/grammar.hpp                                         |    2 
 inst/include/boost/xpressive/detail/static/is_pure.hpp                                         |    2 
 inst/include/boost/xpressive/detail/static/modifier.hpp                                        |    4 
 inst/include/boost/xpressive/detail/static/placeholders.hpp                                    |    4 
 inst/include/boost/xpressive/detail/static/static.hpp                                          |    2 
 inst/include/boost/xpressive/detail/static/transforms/as_action.hpp                            |    2 
 inst/include/boost/xpressive/detail/static/transforms/as_alternate.hpp                         |    2 
 inst/include/boost/xpressive/detail/static/transforms/as_independent.hpp                       |    2 
 inst/include/boost/xpressive/detail/static/transforms/as_inverse.hpp                           |    2 
 inst/include/boost/xpressive/detail/static/transforms/as_marker.hpp                            |    2 
 inst/include/boost/xpressive/detail/static/transforms/as_matcher.hpp                           |    2 
 inst/include/boost/xpressive/detail/static/transforms/as_modifier.hpp                          |    2 
 inst/include/boost/xpressive/detail/static/transforms/as_quantifier.hpp                        |    2 
 inst/include/boost/xpressive/detail/static/transforms/as_sequence.hpp                          |    2 
 inst/include/boost/xpressive/detail/static/transforms/as_set.hpp                               |    2 
 inst/include/boost/xpressive/detail/static/transmogrify.hpp                                    |    2 
 inst/include/boost/xpressive/detail/static/type_traits.hpp                                     |    2 
 inst/include/boost/xpressive/detail/static/visitor.hpp                                         |    2 
 inst/include/boost/xpressive/detail/static/width_of.hpp                                        |    2 
 inst/include/boost/xpressive/detail/utility/algorithm.hpp                                      |    2 
 inst/include/boost/xpressive/detail/utility/boyer_moore.hpp                                    |    4 
 inst/include/boost/xpressive/detail/utility/chset/chset.hpp                                    |    2 
 inst/include/boost/xpressive/detail/utility/hash_peek_bitset.hpp                               |    4 
 inst/include/boost/xpressive/detail/utility/ignore_unused.hpp                                  |    2 
 inst/include/boost/xpressive/detail/utility/literals.hpp                                       |    2 
 inst/include/boost/xpressive/detail/utility/save_restore.hpp                                   |    2 
 inst/include/boost/xpressive/detail/utility/sequence_stack.hpp                                 |    4 
 inst/include/boost/xpressive/detail/utility/symbols.hpp                                        |    2 
 inst/include/boost/xpressive/detail/utility/tracking_ptr.hpp                                   |    2 
 inst/include/boost/xpressive/detail/utility/traits_utils.hpp                                   |    4 
 inst/include/boost/xpressive/detail/utility/width.hpp                                          |    2 
 inst/include/boost/xpressive/match_results.hpp                                                 |    2 
 inst/include/boost/xpressive/regex_algorithms.hpp                                              |    2 
 inst/include/boost/xpressive/regex_constants.hpp                                               |    2 
 inst/include/boost/xpressive/regex_error.hpp                                                   |    2 
 inst/include/boost/xpressive/regex_iterator.hpp                                                |    2 
 inst/include/boost/xpressive/regex_token_iterator.hpp                                          |    2 
 inst/include/boost/xpressive/regex_traits.hpp                                                  |    2 
 inst/include/boost/xpressive/sub_match.hpp                                                     |   14 
 inst/include/boost/xpressive/traits/c_regex_traits.hpp                                         |    2 
 inst/include/boost/xpressive/traits/cpp_regex_traits.hpp                                       |    2 
 inst/include/boost/xpressive/traits/detail/c_ctype.hpp                                         |    2 
 inst/include/boost/xpressive/xpressive_fwd.hpp                                                 |    5 
 inst/include/boost/xpressive/xpressive_static.hpp                                              |    2 
 man/BH-package.Rd                                                                              |    4 
 4091 files changed, 101108 insertions(+), 70474 deletions(-)

More information about BH at CRAN
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Package WhiteStripe updated to version 1.1.1 with previous version 1.0 dated 2014-11-04

Title: White Matter Normalization for Magnetic Resonance Images using Whitestripe
Description: Shinohara et. al introduced Whitestripe, an intensity-based normalization of T1 and T2 images, where normal appearing white matter performs well, but requires segmentation. This method performs white matter mean and standard deviation estimates on data that has been rigidly-registered to the MNI template and uses histogram-based methods.
Author: Taki Shinohara, John Muschelli
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between WhiteStripe versions 1.0 dated 2014-11-04 and 1.1.1 dated 2015-05-21

 DESCRIPTION                    |   31 ++++++++++---------
 MD5                            |   39 ++++++++++++------------
 NAMESPACE                      |    9 +++--
 R/get.largest.mode.R           |   65 ++++++++++++++++++++++++++++++++++++++++-
 R/smooth_hist.R                |    4 +-
 R/whitestripe_ind.R            |   15 ++++++---
 man/download_img_data.Rd       |    3 +
 man/get.deriv.smooth.hist.Rd   |    3 +
 man/get.first.mode.Rd          |only
 man/get.largest.mode.Rd        |    3 +
 man/get.last.mode.Rd           |    3 +
 man/make_img_voi.Rd            |    3 +
 man/s.hist.Rd                  |    3 +
 man/smooth_hist.Rd             |    5 +--
 man/t1.voi.hist.Rd             |    3 +
 man/t2.voi.hist.Rd             |    3 +
 man/whitestripe.Rd             |    3 +
 man/whitestripe_hybrid.Rd      |    3 +
 man/whitestripe_ind_to_mask.Rd |    3 +
 man/whitestripe_norm.Rd        |    6 ++-
 man/xvals.Rd                   |    3 +
 21 files changed, 150 insertions(+), 60 deletions(-)

More information about WhiteStripe at CRAN
Permanent link

Package ordPens updated to version 0.3-1 with previous version 0.2-1 dated 2013-06-14

Title: Selection and/or Smoothing of Ordinal Predictors
Description: Selection and/or smoothing of ordinally scaled independent variables using a group lasso or generalized ridge penalty.
Author: Jan Gertheiss
Maintainer: Jan Gertheiss <jgerthe@uni-goettingen.de>

Diff between ordPens versions 0.2-1 dated 2013-06-14 and 0.3-1 dated 2015-05-21

 DESCRIPTION             |   14 ++++----
 MD5                     |   26 ++++++++--------
 NAMESPACE               |    8 +++-
 R/ordAOV.R              |   12 +++----
 R/ordGene.r             |only
 R/ordPens-internal.R    |   78 ++++++++++++++++++++++++++++++++++++++++--------
 R/ordSelect.R           |    5 ---
 R/ordSmooth.R           |    5 ---
 man/ICFCoreSetCWP.Rd    |    2 -
 man/ordAOV.Rd           |   19 ++++++-----
 man/ordGene.Rd          |only
 man/ordPens-internal.Rd |    4 +-
 man/ordPens-package.Rd  |   16 ++++++---
 man/ordSelect.Rd        |    5 ---
 man/ordSmooth.Rd        |    5 ---
 15 files changed, 125 insertions(+), 74 deletions(-)

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New package metagear with initial version 0.1
Package: metagear
Version: 0.1
Date: 2015-05-20
Title: Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis
Authors@R: person("Marc J.", "Lajeunesse", email = "lajeunesse@usf.edu", role = c("aut", "cre"))
Description: Functionalities for facilitating systematic reviews, data extractions, and meta-analyses. It includes a GUI (graphical user interface) to help screen the abstracts and titles of bibliographic data; tools to assign screening effort across multiple collaborators/reviewers and to assess inter-reviewer reliability; tools to help automate the download and retrieval of journal PDF articles from online databases; automated data extractions from scatter-plots; PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) flow diagrams; simple imputation tools to fill gaps in incomplete or missing study parameters; generation of random effects sizes for Hedges' d, log response ratio, odds ratio, and correlation coefficients for Monte Carlo experiments; covariance equations for modelling dependencies among multiple effect sizes (e.g., effect sizes with a common control); and finally summaries that replicate analyses and outputs from widely used but no longer updated meta-analysis software. Funding for this package was supported by National Science Foundation (NSF) grants DBI-1262545 and DEB-1451031.
Type: Package
Depends: R (>= 3.0.0)
Imports: EBImage (>= 4.4.0), gWidgetsRGtk2 (>= 0.0-83), gWidgets (>= 0.0-54), stringr (>= 0.6.2), metafor (>= 1.9-4), MASS (>= 7.3-29), Matrix (>= 1.1-3)
License: GPL (>= 2)
URL: http://lajeunesse.myweb.usf.edu
Packaged: 2015-05-21 13:01:03 UTC; MJL
Author: Marc J. Lajeunesse [aut, cre]
Maintainer: Marc J. Lajeunesse <lajeunesse@usf.edu>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-21 16:24:43

More information about metagear at CRAN
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Package MazamaSpatialUtils updated to version 0.2.4 with previous version 0.2.3 dated 2015-03-26

Title: Mazama Science Spatial Data Download and Utility Functions
Description: A suite of conversion scripts to create internally standardized spatial polygons dataframes. Utility scripts use these datasets to return values such as country, state, timezone, watershed, etc. associated with a set of longitude/latitude pairs. (They also make cool maps.)
Author: Jonathan Callahan [aut, cre], Will Leahy [aut], Henry Nguyen [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>

Diff between MazamaSpatialUtils versions 0.2.3 dated 2015-03-26 and 0.2.4 dated 2015-05-21

 DESCRIPTION                       |    8 -
 MD5                               |   62 ++++++-------
 NAMESPACE                         |    5 -
 R/MazamaSpatialUtils.R            |   18 ++-
 R/convertGADM.R                   |    3 
 R/convertLayer.R                  |    8 -
 R/convertNaturalEarthAdm1.R       |    4 
 R/convertUSCensusCounties.R       |    1 
 R/convertUSGSHUC8.R               |    5 -
 R/convertWikipediaTimezoneTable.R |   34 +++----
 R/convertWorldTimezones.R         |   14 +-
 R/getCountryCode.R                |    2 
 R/getSpatialData.R                |    1 
 R/organizePolygons.R              |    1 
 build/vignette.rds                |binary
 data/SimpleCountries.RData        |binary
 data/SimpleTimezones.RData        |binary
 demo/findCountries.R              |    3 
 demo/findStates.R                 |    5 -
 demo/findTimezones.R              |    3 
 inst/doc/introduction.R           |    5 -
 inst/doc/introduction.Rmd         |    9 -
 inst/doc/introduction.html        |   11 +-
 man/MazamaSpatialUtils.Rd         |    8 +
 man/SimpleTimezones.Rd            |    2 
 man/SpatialDataDir.Rd             |    2 
 man/convertLayer.Rd               |    2 
 man/convertWorldTimezones.Rd      |   12 +-
 man/getCountryCode.Rd             |    6 -
 tests/testthat.R                  |    5 -
 tests/testthat/test1.R            |  178 ++++++++------------------------------
 vignettes/introduction.Rmd        |    9 -
 32 files changed, 158 insertions(+), 268 deletions(-)

More information about MazamaSpatialUtils at CRAN
Permanent link

Package libamtrack updated to version 0.6.0 with previous version 0.5.5 dated 2014-07-08

Title: Computational Routines for Proton and Ion Radiotherapy
Description: R interface to the open-source, ANSI C library libamtrack (http://libamtrack.dkfz.org). libamtrack provides computational routines for the prediction of detector response and radiobiological efficiency in heavy charged particle beams. It is designed for research in proton and ion dosimetry and radiotherapy. libamtrack also provides many auxiliary physics routines for proton and ion beams. Original package and C-to-R conversion routines developed by Felix A. Klein.
Author: Steffen Greilich and the libamtrack team
Maintainer: Steffen Greilich <s.greilich@dkfz.de>

Diff between libamtrack versions 0.5.5 dated 2014-07-08 and 0.6.0 dated 2015-05-21

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 libamtrack-0.5.5/libamtrack/man/AT.characteristicple.scattering.angle.Rd     |only
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 libamtrack-0.6.0/libamtrack/DESCRIPTION                                      |   18 
 libamtrack-0.6.0/libamtrack/INSTALL                                          |only
 libamtrack-0.6.0/libamtrack/MD5                                              |  209 +-
 libamtrack-0.6.0/libamtrack/NAMESPACE                                        |   91 
 libamtrack-0.6.0/libamtrack/R/AT.SPC.convert.to.DDD.R                        |    3 
 libamtrack-0.6.0/libamtrack/R/AT.SPC.export.DEDX.R                           |   15 
 libamtrack-0.6.0/libamtrack/R/AT.SPC.spectrum.at.depth.g.cm2.R               |   28 
 libamtrack-0.6.0/libamtrack/R/initial.R                                      |    2 
 libamtrack-0.6.0/libamtrack/R/libamtrack.R                                   |  542 +----
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 libamtrack-0.6.0/libamtrack/man/AT.I.eV.from.composition.Rd                  |    4 
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 libamtrack-0.6.0/libamtrack/man/AT.WEPL.Bethe.Rd                             |    4 
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 libamtrack-0.6.0/libamtrack/man/AT.beam.par.technical.to.physical.Rd         |    6 
 libamtrack-0.6.0/libamtrack/man/AT.beta.from.E.Rd                            |    4 
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 libamtrack-0.6.0/libamtrack/man/AT.effective.charge.from.E.MeV.u.Rd          |   17 
 libamtrack-0.6.0/libamtrack/man/AT.electron.density.m3.Rd                    |    4 
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 libamtrack-0.6.0/libamtrack/man/AT.gamma.from.E.Rd                           |    4 
 libamtrack-0.6.0/libamtrack/man/AT.get.materials.data.Rd                     |    4 
 libamtrack-0.6.0/libamtrack/man/AT.kappa.Rd                                  |    4 
 libamtrack-0.6.0/libamtrack/man/AT.lambda.from.energy.loss.Rd                |    4 
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 libamtrack-0.6.0/libamtrack/man/AT.mean.number.of.tracks.contrib.Rd          |    4 
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 libamtrack-0.6.0/libamtrack/man/AT.particle.no.from.Z.and.A.Rd               |    4 
 libamtrack-0.6.0/libamtrack/man/AT.r.RDD.m.Rd                                |    4 
 libamtrack-0.6.0/libamtrack/man/AT.run.CPPSC.method.Rd                       |    6 
 libamtrack-0.6.0/libamtrack/man/AT.run.GSM.method.Rd                         |    6 
 libamtrack-0.6.0/libamtrack/man/AT.run.IGK.method.Rd                         |    6 
 libamtrack-0.6.0/libamtrack/man/AT.set.user.material.Rd                      |    4 
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 libamtrack-0.6.0/libamtrack/man/AT.total.D.Gy.Rd                             |    8 
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 libamtrack-0.6.0/libamtrack/man/AT.translate.dose.into.DSB.distribution.Rd   |    4 
 libamtrack-0.6.0/libamtrack/man/libamtrack-package.Rd                        |   60 
 libamtrack-0.6.0/libamtrack/man/stopping.power.source.no.Rd                  |   58 
 libamtrack-0.6.0/libamtrack/src/AT.h                                         |    6 
 libamtrack-0.6.0/libamtrack/src/AT_Algorithms_IGK.c                          |    8 
 libamtrack-0.6.0/libamtrack/src/AT_Algorithms_IGK.h                          |    3 
 libamtrack-0.6.0/libamtrack/src/AT_DataRange.h                               |    2 
 libamtrack-0.6.0/libamtrack/src/AT_Error.h                                   |    8 
 libamtrack-0.6.0/libamtrack/src/AT_KatzModel.c                               |   20 
 libamtrack-0.6.0/libamtrack/src/AT_NumericalRoutines.c                       |    6 
 libamtrack-0.6.0/libamtrack/src/AT_NumericalRoutines.h                       |    2 
 libamtrack-0.6.0/libamtrack/src/AT_PhysicsRoutines.c                         |   47 
 libamtrack-0.6.0/libamtrack/src/AT_PhysicsRoutines.h                         |    2 
 libamtrack-0.6.0/libamtrack/src/AT_RDD.c                                     |   31 
 libamtrack-0.6.0/libamtrack/src/AT_RDD.h                                     |    2 
 libamtrack-0.6.0/libamtrack/src/AT_RDD_Tabulated.c                           |   44 
 libamtrack-0.6.0/libamtrack/src/AT_R_Wrapper.c                               | 1003 ++--------
 libamtrack-0.6.0/libamtrack/src/AT_R_Wrapper.h                               |  178 -
 libamtrack-0.6.0/libamtrack/src/AT_SPC.c                                     |   10 
 libamtrack-0.6.0/libamtrack/src/AT_SPC.h                                     |   14 
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 libamtrack-0.6.0/libamtrack/src/config.h                                     |   12 
 126 files changed, 1156 insertions(+), 1874 deletions(-)

More information about libamtrack at CRAN
Permanent link

Package hsdar updated to version 0.1.4 with previous version 0.1.3 dated 2015-05-01

Title: Manage, Analyse and Simulate Hyperspectral Data in R
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using the leaf reflectance model PROSPECT and the canopy reflectance model PROSAIL.
Author: Lukas W. Lehnert [cre, aut], Hanna Meyer [ctb], Joerg Bendix [ctb]
Maintainer: Lukas W. Lehnert <lukaslehnert@googlemail.com>

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Package simPH updated to version 1.3.2 with previous version 1.3.1 dated 2015-05-04

Title: Tools for Simulating and Plotting Quantities of Interest Estimated from Cox Proportional Hazards Models
Description: Simulates and plots quantities of interest (relative hazards, first differences, and hazard ratios) for linear coefficients, multiplicative interactions, polynomials, penalised splines, and non-proportional hazards, as well as stratified survival curves from Cox Proportional Hazard models. It also simulates and plots marginal effects for multiplicative interactions.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>

Diff between simPH versions 1.3.1 dated 2015-05-04 and 1.3.2 dated 2015-05-21

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Package rgdal updated to version 0.9-3 with previous version 0.9-2 dated 2015-03-15

Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.6.3, < 2) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package. Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and Expat) are provided on CRAN.
Author: Roger Bivand [cre, aut], Tim Keitt [aut], Barry Rowlingson [aut], Edzer Pebesma [ctb], Michael Sumner [ctb], Robert Hijmans [ctb], Even Rouault [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

Diff between rgdal versions 0.9-2 dated 2015-03-15 and 0.9-3 dated 2015-05-21

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Package kml3d updated to version 2.3 with previous version 2.2 dated 2014-03-25

Title: K-Means for Joint Longitudinal Data
Description: An implementation of k-means specifically design to cluster joint trajectories (longitudinal data on several variable-trajectories). Like 'kml', it provides facilities to deal with missing value, compute several quality criterion (Calinski and Harabatz, Ray and Turie, Davies and Bouldin, BIC,...) and propose a graphical interface for choosing the 'best' number of clusters. In addition, the 3D graph representing the mean joint-trajectories of each cluster can be exported through LaTeX in a 3D dynamic rotating PDF graph.
Author: Christophe Genolini [cre, aut], Bruno Falissard [ctb], Jean-Baptiste Pingault [ctb]
Maintainer: Christophe Genolini <christophe.genolini@u-paris10.fr>

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Package trajectories updated to version 0.1-3 with previous version 0.1-2 dated 2015-04-25

Title: Classes and Methods for Trajectory Data
Description: Classes and methods for trajectory data, with nested classes for individual trips, and collections for different entities. Methods include selection, generalization, aggregation, intersection, and plotting.
Author: Edzer Pebesma [cre, aut], Benedikt Klus [aut], Benedikt Graeler [ctb], Nikolai Gorte [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

Diff between trajectories versions 0.1-2 dated 2015-04-25 and 0.1-3 dated 2015-05-21

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Package smoothSurv updated to version 1.5-2 with previous version 1.5 dated 2015-02-05

Title: Survival Regression with Smoothed Error Distribution
Description: Contains primarily a function to fit a regression model with possibly right, left or interval censored observations and with the error distribution expressed as a mixture of G-splines. Core part of the computation is done in compiled C++ written using the Scythe Statistical Library Version 0.3.
Author: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Maintainer: Arnošt Komárek <arnost.komarek@mff.cuni.cz>

Diff between smoothSurv versions 1.5 dated 2015-02-05 and 1.5-2 dated 2015-05-21

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Package seqminer updated to version 3.9 with previous version 3.7 dated 2015-05-16

Title: Efficiently Read Sequence Data (VCF Format, BCF Format and METAL Format) into R
Description: Integrate sequencing data (VCF/BCF) or meta-analysis results in R.
Author: Xiaowei Zhan <zhanxw@gmail.com> and Dajiang Liu <dajiang.liu@gmail.com>, with contributions from Heng Li <lh3@live.co.uk> (Heng Li wrote tabix and with MIT license we include tabix source codes).
Maintainer: Xiaowei Zhan <zhanxw@gmail.com>

Diff between seqminer versions 3.7 dated 2015-05-16 and 3.9 dated 2015-05-21

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Package riceware updated to version 0.4 with previous version 0.2 dated 2015-05-06

Title: A Diceware Passphrase Implementation
Description: The Diceware method can be used to generate strong passphrases. In short, you roll a 6-faced dice 5 times in a row, the number obtained is matched against a dictionary of easily remembered words. By combining together 7 words thus generated, you obtain a password that is relatively easy to remember, but would take several millions years (on average) for a powerful computer to guess.
Author: Francois Michonneau [aut, cre], Arnold G. Reinhold [cph]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>

Diff between riceware versions 0.2 dated 2015-05-06 and 0.4 dated 2015-05-21

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Package LDPD updated to version 1.1.2 with previous version 1.0.2 dated 2015-01-03

Title: Probability of Default Calibration
Description: Implementation of most popular approaches to PD (probability of default) calibration: Quasi Moment Matching algorithm (D. Tasche), algorithm proposed by M. van der Burgt, K. Pluto and D. Tasche's most prudent estimation methodology.
Author: Denis Surzhko
Maintainer: Denis Surzhko <densur@gmail.com>

Diff between LDPD versions 1.0.2 dated 2015-01-03 and 1.1.2 dated 2015-05-21

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New package DAISIE with initial version 1.0
Package: DAISIE
Type: Package
Title: Dynamical Assembly of Islands by Speciation, Immigration and Extinction
Version: 1.0
Date: 2015-05-20
Depends: R (>= 3.0.0), deSolve
Author: Rampal S. Etienne & Luis M. Valente
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
License: GPL-2
Description: Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. 2015. Ecology Letters. In press.
Packaged: 2015-05-20 20:50:22 UTC; p223208
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-21 09:40:32

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Package trip updated to version 1.1-21 with previous version 1.1-19 dated 2014-11-05

Title: Tools for the Analysis of Animal Track Data
Description: Functions for accessing and manipulating spatial data for animal tracking, with straightforward coercion from and to other formats. Filter for speed and create time spent maps from animal track data.
Author: Michael D. Sumner [aut, cre], Sebastian Luque [ctb]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>

Diff between trip versions 1.1-19 dated 2014-11-05 and 1.1-21 dated 2015-05-21

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Wed, 20 May 2015

Package qdapDictionaries updated to version 1.0.6 with previous version 1.0.5 dated 2015-04-06

Title: Dictionaries and Word Lists for the 'qdap' Package
Description: A collection of dictionaries and word lists for use with the 'qdap' package.
Author: Tyler Rinker
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>

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Package ecp updated to version 2.0.0 with previous version 1.6.2 dated 2015-01-04

Title: Non-Parametric Multiple Change-Point Analysis of Multivariate Data
Description: Implements various procedures for finding multiple change-points through the use of U-statistics. The procedures do not make any distributional assumptions other than the existence of certain absolute moments. Hierarchical and exact search methods are included. All methods return the set of estimated change-points as well as other summary information.
Author: Nicholas A. James and David S. Matteson
Maintainer: Nicholas A. James <nj89@cornell.edu>

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Package xtermStyle updated to version 3.0.5 with previous version 2.2-4 dated 2012-07-19

Title: Terminal Text Formatting Using Escape Sequences
Description: Can be used for coloring output in terminals. It was developed for the standard Ubuntu terminal but should be compatible with any terminal using xterm or ANSI escape sequences. If run in windows, RStudio, or any other platform not supporting such escape sequences it gracefully passes on any output without modifying it.
Author: Christofer Backlin [aut, cre]
Maintainer: Christofer Backlin <christofer.backlin@medsci.uu.se>

Diff between xtermStyle versions 2.2-4 dated 2012-07-19 and 3.0.5 dated 2015-05-20

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Package sirt updated to version 1.6-0 with previous version 1.5-0 dated 2015-03-03

Title: Supplementary Item Response Theory Models
Description: Supplementary item response theory models to complement existing functions in R, including multidimensional compensatory and noncompensatory IRT models, MCMC for hierarchical IRT models and testlet models, NOHARM, faceted and hierarchical rater models, ordinal IRT model (ISOP), discrete grade of membership model, latent regression models, DETECT statistic, local structural equation modeling (LSEM).
Author: Alexander Robitzsch [aut,cre]
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>

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Package oce updated to version 0.9-16 with previous version 0.9-14 dated 2014-05-19

Title: Analysis of Oceanographic Data
Description: Supports the analysis of Oceanographic data, including ADCP measurements, CTD measurements, sectional data, sea-level time series, coastline files, etc. Handles dozens of specialized functions for calculating seawater properties such as potential temperature and density, as well as derived properties such as buoyancy frequency and dynamic height. Map projections are calculated using PROJ.4 functions included within the oce.
Author: Dan Kelley [aut, cre], Clark Richards [aut], Chantelle Layton [ctb, cph] (curl() coauthor), Gerald Evenden [ctb, cph] (PROJ.4 author), Frank Warmerdam [ctb, cph] (PROJ.4 author), Howard Butler [ctb, cph] (PROJ.4 author), Brent Fraser [ctb, cph] (PROJ.4 contributor), Chris Stuber [ctb, cph] (PROJ.4 contributor), Craig Bruce [ctb, cph] (PROJ.4 contributor), Victor Osipkov [ctb, cph] (PROJ.4 contributor), Andrea Antonello [ctb, cph] (PROJ.4 contributor), Charles Karney [ctb, cph] (PROJ.4 contributor), Karsten Engsager [ctb, cph] (PROJ.4 contributor), Knud Poder [ctb, cph] (PROJ.4 contributor), Robert Gentleman [ctb, cph] (author of approx() code, used in binmapAdp()), Ross Ihaka [ctb, cph] (author of approx() code, used in binmapAdp())
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>

Diff between oce versions 0.9-14 dated 2014-05-19 and 0.9-16 dated 2015-05-20

 oce-0.9-14/oce/R/tdr.R                              |only
 oce-0.9-14/oce/R/teos.R                             |only
 oce-0.9-14/oce/data/nao.rda                         |only
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 oce-0.9-16/oce/DESCRIPTION                          |   62 
 oce-0.9-16/oce/MD5                                  |  624 ++++---
 oce-0.9-16/oce/NAMESPACE                            |   86 -
 oce-0.9-16/oce/NEWS                                 |  135 +
 oce-0.9-16/oce/R/AllClass.R                         |   49 
 oce-0.9-16/oce/R/adp.R                              | 1032 ++++++------
 oce-0.9-16/oce/R/adp.rdi.R                          |  301 +--
 oce-0.9-16/oce/R/adp.sontek.R                       |    2 
 oce-0.9-16/oce/R/adv.R                              |   74 
 oce-0.9-16/oce/R/adv.nortek.R                       |    2 
 oce-0.9-16/oce/R/adv.sontek.R                       |    2 
 oce-0.9-16/oce/R/cm.R                               |   13 
 oce-0.9-16/oce/R/coastline.R                        |   42 
 oce-0.9-16/oce/R/colors.R                           |  126 +
 oce-0.9-16/oce/R/ctd.R                              | 1284 ++++++++-------
 oce-0.9-16/oce/R/drifter.R                          |  197 +-
 oce-0.9-16/oce/R/echosounder.R                      |  104 -
 oce-0.9-16/oce/R/gps.R                              |    2 
 oce-0.9-16/oce/R/imagep.R                           |  216 +-
 oce-0.9-16/oce/R/index.R                            |only
 oce-0.9-16/oce/R/landsat.R                          |  692 +++++++-
 oce-0.9-16/oce/R/lisst.R                            |    6 
 oce-0.9-16/oce/R/lobo.R                             |    6 
 oce-0.9-16/oce/R/logger.R                           |only
 oce-0.9-16/oce/R/map.R                              | 1664 +++++++++++++++-----
 oce-0.9-16/oce/R/met.R                              |   63 
 oce-0.9-16/oce/R/misc.R                             |  216 ++
 oce-0.9-16/oce/R/oce.R                              |  272 ++-
 oce-0.9-16/oce/R/odf.R                              |only
 oce-0.9-16/oce/R/processingLog.R                    |   16 
 oce-0.9-16/oce/R/sealevel.R                         |   41 
 oce-0.9-16/oce/R/section.R                          |  194 +-
 oce-0.9-16/oce/R/sw.R                               | 1194 +++++++-------
 oce-0.9-16/oce/R/tidem.R                            |    6 
 oce-0.9-16/oce/R/topo.R                             |   78 
 oce-0.9-16/oce/R/windrose.R                         |    6 
 oce-0.9-16/oce/R/zzz.R                              |    6 
 oce-0.9-16/oce/README.md                            |only
 oce-0.9-16/oce/build/vignette.rds                   |binary
 oce-0.9-16/oce/data/adp.rda                         |binary
 oce-0.9-16/oce/data/ctd.rda                         |binary
 oce-0.9-16/oce/data/ctdRaw.rda                      |binary
 oce-0.9-16/oce/data/landsat.rda                     |only
 oce-0.9-16/oce/data/logger.rda                      |only
 oce-0.9-16/oce/data/met.rda                         |binary
 oce-0.9-16/oce/data/sealevel.rda                    |binary
 oce-0.9-16/oce/data/section.rda                     |binary
 oce-0.9-16/oce/inst/doc/oce.R                       |   69 
 oce-0.9-16/oce/inst/doc/oce.Rnw                     |  106 -
 oce-0.9-16/oce/inst/doc/oce.pdf                     |binary
 oce-0.9-16/oce/inst/po/de/LC_MESSAGES/R-oce.mo      |binary
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 oce-0.9-16/oce/man/T90fromT68.Rd                    |only
 oce-0.9-16/oce/man/adp-class.Rd                     |   15 
 oce-0.9-16/oce/man/adp.Rd                           |    4 
 oce-0.9-16/oce/man/adv-class.Rd                     |   15 
 oce-0.9-16/oce/man/adv.Rd                           |    6 
 oce-0.9-16/oce/man/argShow.Rd                       |only
 oce-0.9-16/oce/man/as.ctd.Rd                        |   21 
 oce-0.9-16/oce/man/as.lisst.Rd                      |   10 
 oce-0.9-16/oce/man/as.logger.Rd                     |only
 oce-0.9-16/oce/man/as.sealevel.Rd                   |   14 
 oce-0.9-16/oce/man/as.topo.Rd                       |    4 
 oce-0.9-16/oce/man/as.windrose.Rd                   |    2 
 oce-0.9-16/oce/man/beamUnspreadAdp.Rd               |    2 
 oce-0.9-16/oce/man/binApply.Rd                      |   19 
 oce-0.9-16/oce/man/cm-class.Rd                      |    9 
 oce-0.9-16/oce/man/cm.Rd                            |    8 
 oce-0.9-16/oce/man/coastline-class.Rd               |    6 
 oce-0.9-16/oce/man/coastlineWorld.Rd                |    4 
 oce-0.9-16/oce/man/colormap.Rd                      |   66 
 oce-0.9-16/oce/man/ctd-class.Rd                     |   99 -
 oce-0.9-16/oce/man/ctd.Rd                           |   20 
 oce-0.9-16/oce/man/ctdDecimate.Rd                   |    4 
 oce-0.9-16/oce/man/ctdRaw.Rd                        |   19 
 oce-0.9-16/oce/man/ctdTrim.Rd                       |  129 -
 oce-0.9-16/oce/man/curl.Rd                          |only
 oce-0.9-16/oce/man/despike.Rd                       |   25 
 oce-0.9-16/oce/man/drawIsopycnals.Rd                |    7 
 oce-0.9-16/oce/man/drawPalette.Rd                   |   12 
 oce-0.9-16/oce/man/drifter-class.Rd                 |   17 
 oce-0.9-16/oce/man/drifter.Rd                       |    4 
 oce-0.9-16/oce/man/drifterGrid.Rd                   |only
 oce-0.9-16/oce/man/echosounder-class.Rd             |   16 
 oce-0.9-16/oce/man/echosounder.Rd                   |    7 
 oce-0.9-16/oce/man/extract.Rd                       |    2 
 oce-0.9-16/oce/man/geodDist.Rd                      |    4 
 oce-0.9-16/oce/man/geodGc.Rd                        |    4 
 oce-0.9-16/oce/man/gps-class.Rd                     |    4 
 oce-0.9-16/oce/man/imagep.Rd                        |   34 
 oce-0.9-16/oce/man/landsat-class.Rd                 |  178 +-
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 oce-0.9-16/oce/man/landsatAdd.Rd                    |only
 oce-0.9-16/oce/man/landsatTrim.Rd                   |    8 
 oce-0.9-16/oce/man/lisst-class.Rd                   |    9 
 oce-0.9-16/oce/man/lisst.Rd                         |    6 
 oce-0.9-16/oce/man/lobo-class.Rd                    |   10 
 oce-0.9-16/oce/man/lobo.Rd                          |    8 
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 oce-0.9-16/oce/man/lookWithin.Rd                    |only
 oce-0.9-16/oce/man/magneticField.Rd                 |    2 
 oce-0.9-16/oce/man/makeSection.Rd                   |   37 
 oce-0.9-16/oce/man/map2lonlat.Rd                    |   75 
 oce-0.9-16/oce/man/mapArrows.Rd                     |only
 oce-0.9-16/oce/man/mapAxis.Rd                       |only
 oce-0.9-16/oce/man/mapContour.Rd                    |    3 
 oce-0.9-16/oce/man/mapDirectionField.Rd             |only
 oce-0.9-16/oce/man/mapGrid.Rd                       |only
 oce-0.9-16/oce/man/mapImage.Rd                      |  114 -
 oce-0.9-16/oce/man/mapLines.Rd                      |   14 
 oce-0.9-16/oce/man/mapLocator.Rd                    |    3 
 oce-0.9-16/oce/man/mapLongitudeLatitudeXY.Rd        |    7 
 oce-0.9-16/oce/man/mapMeridians.Rd                  |    9 
 oce-0.9-16/oce/man/mapPlot.Rd                       |  492 +++++
 oce-0.9-16/oce/man/mapPoints.Rd                     |   23 
 oce-0.9-16/oce/man/mapPolygon.Rd                    |    5 
 oce-0.9-16/oce/man/mapScalebar.Rd                   |   12 
 oce-0.9-16/oce/man/mapText.Rd                       |    9 
 oce-0.9-16/oce/man/mapTissot.Rd                     |only
 oce-0.9-16/oce/man/mapZones.Rd                      |   10 
 oce-0.9-16/oce/man/met-class.Rd                     |   10 
 oce-0.9-16/oce/man/met.Rd                           |   24 
 oce-0.9-16/oce/man/oce-class.Rd                     |   18 
 oce-0.9-16/oce/man/oce.approx.Rd                    |only
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 oce-0.9-16/oce/man/oce.plot.ts.Rd                   |   43 
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 oce-0.9-16/oce/man/plot.adp.Rd                      |   10 
 oce-0.9-16/oce/man/plot.adv.Rd                      |    2 
 oce-0.9-16/oce/man/plot.coastline.Rd                |   38 
 oce-0.9-16/oce/man/plot.ctd.Rd                      |   45 
 oce-0.9-16/oce/man/plot.drifter.Rd                  |  139 -
 oce-0.9-16/oce/man/plot.echosounder.Rd              |   10 
 oce-0.9-16/oce/man/plot.landsat.Rd                  |  117 +
 oce-0.9-16/oce/man/plot.logger.Rd                   |only
 oce-0.9-16/oce/man/plot.odf.Rd                      |only
 oce-0.9-16/oce/man/plot.sealevel.Rd                 |   28 
 oce-0.9-16/oce/man/plot.section.Rd                  |   35 
 oce-0.9-16/oce/man/plot.topo.Rd                     |    4 
 oce-0.9-16/oce/man/plotProfile.Rd                   |   16 
 oce-0.9-16/oce/man/plotScan.Rd                      |   41 
 oce-0.9-16/oce/man/plotTS.Rd                        |   28 
 oce-0.9-16/oce/man/processingLog.Rd                 |   16 
 oce-0.9-16/oce/man/read.adp.Rd                      |   26 
 oce-0.9-16/oce/man/read.coastline.Rd                |   20 
 oce-0.9-16/oce/man/read.ctd.Rd                      |   82 
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 oce-0.9-16/oce/man/read.landsat.Rd                  |   87 -
 oce-0.9-16/oce/man/read.lisst.Rd                    |    4 
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 oce-0.9-16/oce/man/read.met.Rd                      |   14 
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 oce-0.9-16/oce/man/read.sealevel.Rd                 |   11 
 oce-0.9-16/oce/man/read.topo.Rd                     |    8 
 oce-0.9-16/oce/man/rescale.Rd                       |    2 
 oce-0.9-16/oce/man/resizableLabel.Rd                |    3 
 oce-0.9-16/oce/man/sealevel-class.Rd                |   10 
 oce-0.9-16/oce/man/sealevel.Rd                      |   43 
 oce-0.9-16/oce/man/sealevelTuktoyaktuk.Rd           |    8 
 oce-0.9-16/oce/man/section-class.Rd                 |    4 
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 oce-0.9-16/oce/man/swConservativeTemperature.Rd     |   38 
 oce-0.9-16/oce/man/swDepth.Rd                       |   32 
 oce-0.9-16/oce/man/swDynamicHeight.Rd               |   48 
 oce-0.9-16/oce/man/swLapseRate.Rd                   |   20 
 oce-0.9-16/oce/man/swN2.Rd                          |   51 
 oce-0.9-16/oce/man/swPressure.Rd                    |   15 
 oce-0.9-16/oce/man/swRho.Rd                         |   63 
 oce-0.9-16/oce/man/swRrho.Rd                        |   37 
 oce-0.9-16/oce/man/swSCTp.Rd                        |   43 
 oce-0.9-16/oce/man/swSTrho.Rd                       |   56 
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 oce-0.9-16/oce/man/swSpecificHeat.Rd                |   27 
 oce-0.9-16/oce/man/swTFreeze.Rd                     |   43 
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 oce-0.9-16/oce/man/wind.Rd                          |    3 
 oce-0.9-16/oce/man/xyzToEnuAdv.Rd                   |    4 
 oce-0.9-16/oce/po/R-de.po                           |  640 ++++++-
 oce-0.9-16/oce/po/R-es.po                           |  768 +++++++--
 oce-0.9-16/oce/po/R-fr.po                           |  647 ++++++-
 oce-0.9-16/oce/po/R-oce.pot                         |  601 +++++--
 oce-0.9-16/oce/po/R-zh.po                           |  638 ++++++-
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Permanent link

Package miceadds updated to version 1.2-0 with previous version 1.1-1 dated 2015-02-23

Title: Some Additional Multiple Imputation Functions, Especially for 'mice'
Description: Contains some auxiliary functions for multiple imputation which complements existing functionality in R. In addition to some utility functions, main features include plausible value imputation, multilevel imputation functions, imputation using partial least squares (PLS) for high dimensional predictors, nested multiple imputation, and two-way imputation.
Author: Alexander Robitzsch [aut, cre]
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>

Diff between miceadds versions 1.1-1 dated 2015-02-23 and 1.2-0 dated 2015-05-20

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Package lamW updated to version 0.1-1 with previous version 0.0-1 dated 2015-05-19

Title: Lambert-W Function
Description: Implements both real-valued branches of the Lambert-W function, also known as the product logarithm, without the need for installing the entire GSL.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>

Diff between lamW versions 0.0-1 dated 2015-05-19 and 0.1-1 dated 2015-05-20

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More information about lamW at CRAN
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Package kyotil updated to version 2015.5-20 with previous version 2015.2-27 dated 2015-03-04

Title: Utility Functions by Youyi, Krisz and Others
Description: A miscellaneous set of functions for printing, plotting, kernels, etc. Additional contributors are acknowledged on individual function help pages.
Author: Youyi Fong <yfong@fhcrc.org>, Krisztian Sebestyen <ksebestyen@gmail.com>
Maintainer: Youyi Fong <yfong@fhcrc.org>

Diff between kyotil versions 2015.2-27 dated 2015-03-04 and 2015.5-20 dated 2015-05-20

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New package evolqg with initial version 0.1-3
Package: evolqg
Type: Package
Title: Tools for Evolutionary Quantitative Genetics
Version: 0.1-3
Date: 2015-05-18
Author: Ana Paula Assis, Diogo Melo, Edgar Zanella, Fabio Machado, Guilherme Garcia
Maintainer: Diogo Melo <diogro@usp.br>
Description: Provides functions for covariance matrix comparisons, estimation of repeatabilities in measurements and matrices, and general evolutionary quantitative genetics tools.
Depends: R (>= 3.1.0), plyr (>= 1.7.1)
Imports: Rcpp, reshape2, ggplot2, magrittr, tidyr, vegan, ape, phytools, mvtnorm
Suggests: testthat (>= 0.2), foreach, grid, gridExtra, doParallel
LinkingTo: Rcpp
License: MIT + file LICENSE
BugReports: https://github.com/lem-usp/evolqg/issues
NeedsCompilation: yes
Packaged: 2015-05-20 15:12:22 UTC; diogro
Repository: CRAN
Date/Publication: 2015-05-21 00:53:37

More information about evolqg at CRAN
Permanent link

New package VIGoR with initial version 1.0
Package: VIGoR
Type: Package
Title: Variational Bayesian Inference for Genome-Wide Regression
Version: 1.0
Date: 2015-05-18
Author: Akio Onogi and Hiroyoshi Iwata
Maintainer: Akio Onogi <onogiakio@gmail.com>
Description: Conducts linear regression using variational Bayesian inference, particularly optimized for genome-wide association mapping and whole-genome prediction which use a number of DNA markers as the explanatory variables. Provides seven regression models which select the important variables (i.e., the variables related to response variables) among the given explanatory variables in different ways (i.e., model structures).
License: MIT + file LICENSE
Packaged: 2015-05-20 13:20:36 UTC; seisoku
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-05-20 15:38:58

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Package RInside updated to version 0.2.13 with previous version 0.2.12 dated 2015-01-28

Title: C++ Classes to Embed R in C++ Applications
Description: C++ classes to embed R in C++ applications The 'RInside' packages makes it easier to have "R inside" your C++ application by providing a C++ wrapper class providing the R interpreter. As R itself is embedded into your application, a shared library build of R is required. This works on Linux, OS X and even on Windows provided you use the same tools used to build R itself. Numerous examples are provided in the eight subdirectories of the examples/ directory of the installed package: standard, mpi (for parallel computing) qt (showing how to embed 'RInside' inside a Qt GUI application), wt (showing how to build a "web-application" using the Wt toolkit), armadillo (for 'RInside' use with 'RcppArmadillo') and eigen (for 'RInside' use with 'RcppEigen'). The example use GNUmakefile(s) with GNU extensions, so a GNU make is required (and will use the GNUmakefile automatically). Doxygen-generated documentation of the C++ classes is available at the 'RInside' website as well.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RInside versions 0.2.12 dated 2015-01-28 and 0.2.13 dated 2015-05-20

 ChangeLog                    |   17 ++++++++++++++++-
 DESCRIPTION                  |   18 +++++++++---------
 MD5                          |   10 +++++-----
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Package mixAK updated to version 4.0-5 with previous version 3.10 dated 2015-02-06

Title: Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering
Description: Contains a mixture of statistical methods including the MCMC methods to analyze normal mixtures. Additionally, model based clustering methods are implemented to perform classification based on (multivariate) longitudinal (or otherwise correlated) data. The basis for such clustering is a mixture of multivariate generalized linear mixed models.
Author: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Maintainer: Arnošt Komárek <arnost.komarek@mff.cuni.cz>

Diff between mixAK versions 3.10 dated 2015-02-06 and 4.0-5 dated 2015-05-20

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More information about mixAK at CRAN
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Package kml updated to version 2.3 with previous version 2.2 dated 2014-03-24

Title: K-Means for Longitudinal Data
Description: An implementation of k-means specifically design to cluster longitudinal data. It provides facilities to deal with missing value, compute several quality criterion (Calinski and Harabatz, Ray and Turie, Davies and Bouldin, BIC, ...) and propose a graphical interface for choosing the 'best' number of clusters.
Author: Christophe Genolini [cre, aut], Bruno Falissard [ctb]
Maintainer: Christophe Genolini <christophe.genolini@u-paris10.fr>

Diff between kml versions 2.2 dated 2014-03-24 and 2.3 dated 2015-05-20

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More information about kml at CRAN
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New package ClustMMDD with initial version 1.0.0
Package: ClustMMDD
Type: Package
Title: Variable Selection in Clustering by Mixture Models for Discrete Data
Version: 1.0.0
Date: 2015-05-18
Author: Wilson Toussile
Maintainer: Wilson Toussile <wilson.toussile@gmail.com>
Description: An implementation of a variable selection procedure in clustering by mixture of multinomial models for discrete data. Genotype data are examples of such data with two unordered observations (alleles) at each locus for diploid individual. The two-fold problem is seen as a model selection problem where competing models are characterized by the number of clusters K, and the subset S of clustering variables. Competing models are compared by penalized maximum likelihood criteria. We considered asymptotic criteria such as Akaike and Bayesian Information criteria, and a family of penalized criteria with penalty function to be data driven calibrated.
License: GPL (>= 2)
Depends: Rcpp (>= 0.11.5)
Collate: "RcppExports.R" "ClustMMDD.R" "modelKS.R" "zzz.R"
LazyLoad: true
Imports: methods
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2015-05-20 12:59:33 UTC; tousswil
Repository: CRAN
Date/Publication: 2015-05-20 15:19:27

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New package CausalFX with initial version 1.0.1
Package: CausalFX
Type: Package
Title: Methods for Estimating Causal Effects from Observational Data
Version: 1.0.1
Date: 2015-05-20
Imports: igraph, rcdd, rje
Authors@R: c(person("Ricardo", "Silva", email = "ricardo@stats.ucl.ac.uk", role = c("cre", "aut")), person("Robin", "Evans", email = "robin.evans@stats.ox.ac.uk", role = "aut"))
Maintainer: Ricardo Silva <ricardo@stats.ucl.ac.uk>
Description: Estimate causal effects of one variable on another, currently for binary data only. Methods include instrumental variable bounds, adjustment by a given covariate set, adjustment by an induced covariate set using a variation of the PC algorithm, and an effect bounding method (the Witness Protection Program) based on covariate adjustment with observable independence constraints.
License: GPL (>= 2)
URL: http://github.com/rbas2015/CausalFX
BugReports: http://github.com/rbas2015/CausalFX/issues
NeedsCompilation: no
Packaged: 2015-05-20 14:22:42 UTC; ricardo
Author: Ricardo Silva [cre, aut], Robin Evans [aut]
Repository: CRAN
Date/Publication: 2015-05-20 17:10:47

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New package SubpathwayGMir with initial version 1.0
Package: SubpathwayGMir
Type: Package
Title: Identify Metabolic Subpathways Mediated by MicroRNAs
Version: 1.0
Date: 2015-05-20
Author: Li Feng, Chunquan Li and Xia Li
Maintainer: Li Feng <biofengfeng@sina.com>
Description: Routines for identifying metabolic subpathways mediated by microRNAs (miRNAs) through topologically locating miRNAs and genes within reconstructed Kyoto Encyclopedia of Genes and Genomes (KEGG) metabolic pathway graphs embedded by miRNAs. (1) This package can obtain the reconstructed KEGG metabolic pathway graphs with genes and miRNAs as nodes, through converting KEGG metabolic pathways to graphs with genes as nodes and compounds as edges, and then integrating miRNA-target interactions verified by low-throughput experiments from four databases (TarBase, miRecords, mirTarBase and miR2Disease) into converted pathway graphs. (2) This package can locate metabolic subpathways mediated by miRNAs by topologically analyzing the "lenient distance" of miRNAs and genes within reconstructed KEGG metabolic pathway graphs.(3) This package can identify significantly enriched miRNA-mediated metabolic subpathways based on located subpathways by hypergenomic test. (4) This package can support six species for metabolic subpathway identification, such as caenorhabditis elegans, drosophila melanogaster, danio rerio, homo sapiens, mus musculus and rattus norvegicus, and user only need to update interested organism-specific environment variables.
Depends: R (>= 3.0.2), XML, igraph
Collate: fdr.est.R getBackground.R getEdgeLabel.R getEdgeLty.R getInteGraphList.R GetK2riData.R getLayout.R getLocSubGraph.R getOneNodePath.R getSymbolFromGene.R identifyGraph.R initializeK2ri.R plotGraph.R printGraph.R updateOrgEnvir.R mytriangle.R
LazyData: Yes
License: GPL (>= 2)
biocViews: Statistics, Annotation, SubPathways, Graphs, MicroRNAs
Packaged: 2015-05-20 06:50:06 UTC; sunyao
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-20 14:15:38

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Package shapeR updated to version 0.1-5 with previous version 0.1-3 dated 2015-04-03

Title: Collection and Analysis of Otolith Shape Data
Description: Studies otolith shape variation among fish populations. Otoliths are calcified structures found in the inner ear of teleost fish and their shape has been known to vary among several fish populations and stocks, making them very useful in taxonomy, species identification and to study geographic variations. The package extends previously described software used for otolith shape analysis by allowing the user to automatically extract closed contour outlines from a large number of images, perform smoothing to eliminate pixel noise, choose from conducting either a Fourier or wavelet transform to the outlines and visualize the mean shape. The output of the package are independent Fourier or wavelet coefficients which can be directly imported into a wide range of statistical packages in R. The package might prove useful in studies of any two dimensional objects.
Author: Lisa Anne Libungan [aut, cre], Snaebjorn Palsson [aut, ths]
Maintainer: Lisa Anne Libungan <lisa.libungan@gmail.com>

Diff between shapeR versions 0.1-3 dated 2015-04-03 and 0.1-5 dated 2015-05-20

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Package ruv updated to version 0.9.5 with previous version 0.9.4 dated 2014-10-24

Title: Detect and Remove Unwanted Variation using Negative Controls
Description: Implements the 'RUV' (Remove Unwanted Variation) algorithms. These algorithms attempt to adjust for systematic errors of unknown origin in high-dimensional data. The algorithms were originally developed for use with genomic data, especially microarray data, but may be useful with other types of high-dimensional data as well. These algorithms were proposed by Gagnon-Bartsch and Speed (2012), and by Gagnon-Bartsch, Jacob and Speed (2013). The algorithms require the user to specify a set of negative control variables, as described in the references. The algorithms included in this package are 'RUV-2', 'RUV-4', 'RUV-inv', and 'RUV-rinv', along with various supporting algorithms.
Author: Johann Gagnon-Bartsch <johann@stat.berkeley.edu>
Maintainer: Johann Gagnon-Bartsch <johann@stat.berkeley.edu>

Diff between ruv versions 0.9.4 dated 2014-10-24 and 0.9.5 dated 2015-05-20

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More information about ruv at CRAN
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Package emil updated to version 2.0.2 with previous version 1.1-6 dated 2014-08-01

Title: Evaluation of Modeling without Information Leakage
Description: A toolbox for designing and evaluating predictive models with resampling methods. The aim of this package is to provide a simple and efficient general framework for working with any type of prediction problem, be it classification, regression or survival analysis, that is easy to extend and adapt to your specific setting. Some commonly used methods for classification, regression and survival analysis are included.
Author: Christofer Backlin [aut, cre], Mats Gustafsson [aut]
Maintainer: Christofer Backlin <christofer.backlin@medsci.uu.se>

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New package covr with initial version 1.0.0
Package: covr
Title: Test Coverage for Packages
Version: 1.0.0
Authors@R: person("Jim", "Hester", email = "james.f.hester@gmail.com", role = c("aut", "cre"))
Description: Track and report code coverage for your package and (optionally) upload the results to a coverage service like Codecov (http://codecov.io) or Coveralls (http://coveralls.io). Code coverage is a measure of the amount of code being exercised by the tests. It is an indirect measure of test quality. This package is compatible with any testing methodology or framework and tracks coverage of both R code and compiled C/C++/Fortran code.
Depends: R (>= 3.1.0), methods
Imports: jsonlite, rex, devtools, httr, crayon, htmltools
Suggests: R6, knitr, shiny (>= 0.11.1), testthat, rstudioapi (>= 0.2)
License: MIT + file LICENSE
LazyData: true
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2015-05-19 16:05:52 UTC; jhester
Author: Jim Hester [aut, cre]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Repository: CRAN
Date/Publication: 2015-05-20 09:18:33

More information about covr at CRAN
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Package TickExec updated to version 1.1 with previous version 1.0 dated 2015-04-22

Title: Execution Functions for Tick Data Back Test
Description: Functions to execute orders in backtesting using tick data. A testing platform was established by the four major execution functions, namely 'LimitBuy', 'LimitSell', 'MarketBuy' and 'MarketSell', which enclosed all tedious aspects (such as queueing for order executions and calculate actual executed volumes) for order execution using tick data. Such that one can focus on the logic of strategies, rather than its execution.
Author: HKUST
Maintainer: SONG Yang <ysongad@connect.ust.hk>

Diff between TickExec versions 1.0 dated 2015-04-22 and 1.1 dated 2015-05-20

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Package DLMtool updated to version 1.35 with previous version 1.34 dated 2014-09-14

Title: Data-Limited Methods Toolkit
Description: Simulation testing and implementation of data-limited fishery stock assessment methods.
Author: Tom Carruthers
Maintainer: Tom Carruthers <t.carruthers@fisheries.ubc.ca>

Diff between DLMtool versions 1.34 dated 2014-09-14 and 1.35 dated 2015-05-20

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Tue, 19 May 2015

Package SpatialVx updated to version 0.2-3 with previous version 0.2-2 dated 2014-12-23

Title: Spatial Forecast Verification
Description: Contains functions to perform spatial forecast verification.
Author: Eric Gilleland <EricG@ucar.edu>
Maintainer: Eric Gilleland <EricG@ucar.edu>

Diff between SpatialVx versions 0.2-2 dated 2014-12-23 and 0.2-3 dated 2015-05-19

 DESCRIPTION               |   10 ++--
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New package decisionSupport with initial version 1.101.1
Package: decisionSupport
Type: Package
Title: Quantitative Support of Decision Making under Uncertainty
Version: 1.101.1
Date: 2015-05-19
Authors@R: c( person("Lutz", "Göhring", email = "lutz.goehring@gmx.de", role = c("cre", "aut"), comment="ICRAF and Lutz Göhring Consulting"), person("Eike", "Luedeling", email = "eike@eikeluedeling.com ", role = "aut", comment="ICRAF"))
Copyright: World Agroforestry Centre (ICRAF) 2015
Description: Supporting the quantitative analysis of binary welfare based decision making processes using Monte Carlo simulations. Decision support is given on two levels: (i) The actual decision level is to choose between two alternatives under probabilistic uncertainty. This package calculates the optimal decision based on maximizing expected welfare. (ii) The meta decision level is to allocate resources to reduce the uncertainty in the underlying decision problem, i.e to increase the current information to improve the actual decision making process. This problem is dealt with using the Value of Information Analysis. The Expected Value of Information for arbitrary prospective estimates can be calculated as well as Individual and Clustered Expected Value of Perfect Information. The probabilistic calculations are done via Monte Carlo simulations. This Monte Carlo functionality can be used on its own.
License: GPL-3
Depends: R (>= 3.1.3)
Imports: msm (>= 1.5), mvtnorm (>= 1.0.2), stats (>= 3.1.3)
Suggests: chillR (>= 0.54), eha (>= 2.4.2), mc2d (>= 0.1.15), nleqslv (>= 2.6), pls (>= 2.4.3), rriskDistributions (>= 2.0), testthat (>= 0.9.1), knitr
URL: http://www.worldagroforestry.org/
Encoding: UTF-8
Collate: 'rmvnorm90ci_exact.R' 'rdistq_fit.R' 'random.R' 'paramtnormci_numeric.R' 'paramtnormci_fit.R' 'rtnorm90ci.R' 'rdist90ci_exact.R' 'estimate1d.R' 'estimate.R' 'mcSimulation.R' 'welfareDecisionAnalysis.R' 'eviSimulation.R' 'individualEvpiSimulation.R' 'estimate_read_csv_old.R' 'decisionSupport.R' 'decisionSupport-package.R' 'plainNames2data.frameNames.R' 'plsr.mcSimulation.R'
Packaged: 2015-05-19 18:26:37 UTC; goehring
Author: Lutz Göhring [cre, aut] (ICRAF and Lutz Göhring Consulting), Eike Luedeling [aut] (ICRAF)
Maintainer: Lutz Göhring <lutz.goehring@gmx.de>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-20 01:20:39

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New package clustertend with initial version 1.4
Package: clustertend
Type: Package
Title: Check the Clustering Tendency
Version: 1.4
Date: 2015-05-17
Author: Luo YiLan, Zeng RuTong
Maintainer: Zeng RuTong <670273197@qq.com>
Description: Calculate some statistics aiming to help analyzing the clustering tendency of given data. In the first version, Hopkins' statistic is implemented.
License: GPL (>= 2)
Packaged: 2015-05-19 15:34:31 UTC; dell
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-20 01:15:11

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New package bigml with initial version 0.1.2
Package: bigml
Type: Package
Title: Bindings for the BigML API
Version: 0.1.2
Date: 2015-05-08
Authors@R: c(person("Leon", "Hwang", role=c("cre", "aut"), email="hwang@bigml.com"))
Description: The 'bigml' package contains bindings for the BigML API. The package includes methods that provide straightforward access to basic API functionality, as well as methods that accommodate idiomatic R data types and concepts.
License: LGPL-3
URL: https://github.com/bigmlcom/bigml-r
BugReports: https://github.com/bigmlcom/bigml-r/issues
Imports: RJSONIO, RCurl, plyr
Collate: 'bigml-internal.R' 'formEncodeURL.R' 'bigml-package.R' 'createDataset.R' 'createModel.R' 'createPrediction.R' 'createSource.R' 'getDataset.R' 'getModel.R' 'getPrediction.R' 'getSource.R' 'listDatasets.R' 'listModels.R' 'listSources.R' 'quickDataset.R' 'quickModel.R' 'quickPrediction.R' 'quickSource.R' 'setCredentials.R' 'deleteResource.R'
NeedsCompilation: no
Packaged: 2015-05-19 07:44:35 UTC; leon
Author: Leon Hwang [cre, aut]
Maintainer: Leon Hwang <hwang@bigml.com>
Repository: CRAN
Date/Publication: 2015-05-20 01:18:53

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Package permute updated to version 0.8-4 with previous version 0.8-3 dated 2014-01-29

Title: Functions for Generating Restricted Permutations of Data
Description: A set of restricted permutation designs for freely exchangeable, line transects (time series), and spatial grid designs plus permutation of blocks (groups of samples) is provided. 'permute' also allows split-plot designs, in which the whole-plots or split-plots or both can be freely-exchangeable or one of the restricted designs. The 'permute' package is modelled after the permutation schemes of 'Canoco 3.1' (and later) by Cajo ter Braak.
Author: Gavin L. Simpson [aut, cph, cre], R Core Team [cph], Douglas M. Bates [ctb], Jari Oksanen [ctb]
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>

Diff between permute versions 0.8-3 dated 2014-01-29 and 0.8-4 dated 2015-05-19

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Package pegas updated to version 0.8 with previous version 0.7 dated 2015-03-05

Title: Population and Evolutionary Genetics Analysis System
Description: Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, and for the analysis of population nucleotide sequences and micro-satellites including coalescence analyses.
Author: Emmanuel Paradis [aut, cre, cph], Thibaut Jombart [aut, cph], Klaus Schliep [aut, cph], Alastair Potts [aut, cph], David Winter [aut, cph]
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>

Diff between pegas versions 0.7 dated 2015-03-05 and 0.8 dated 2015-05-19

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Package list updated to version 8.0 with previous version 7.1 dated 2014-11-29

Title: Statistical Methods for the Item Count Technique and List Experiment
Description: Allows researchers to conduct multivariate statistical analyses of survey data with list experiments. This survey methodology is also known as the item count technique or the unmatched count technique and is an alternative to the commonly used randomized response method. The package implements the methods developed by Imai (2011), Blair and Imai (2012), Blair, Imai, and Lyall (2013), Imai, Park, and Greene (2014), and Aronow, Coppock, Crawford, and Green (2015). This includes a Bayesian MCMC implementation of regression for the standard and multiple sensitive item list experiment designs and a random effects setup, a Bayesian MCMC hierarchical regression model with up to three hierarchical groups, the combined list experiment and endorsement experiment regression model, a joint model of the list experiment that enables the analysis of the list experiment as a predictor in outcome regression models, and a method for combining list experiments with direct questions. In addition, the package implements the statistical test that is designed to detect certain failures of list experiments, and a placebo test for the list experiment using data from direct questions.
Author: Graeme Blair [aut, cre], Kosuke Imai [aut, cre], Bethany Park [ctb], Alexander Coppock [ctb]
Maintainer: Graeme Blair <graeme.blair@columbia.edu>

Diff between list versions 7.1 dated 2014-11-29 and 8.0 dated 2015-05-19

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New package lamW with initial version 0.0-1
Package: lamW
Type: Package
Title: Lambert-W Function
Version: 0.0-1
Date: 2015-05-19
Authors@R: c(person(given="Avraham", family="Adler", role=c("aut", "cph", "cre"), email="Avraham.Adler@gmail.com"))
Description: Implements both real-valued branches of the Lambert-W function, also known as the product logarithm, without the need for installing the entire GSL.
License: BSD_2_clause + file LICENSE
Imports: Rcpp (>= 0.11.6)
LinkingTo: Rcpp
Suggests: testthat
NeedsCompilation: yes
Packaged: 2015-05-19 20:52:55 UTC; aadler00
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Repository: CRAN
Date/Publication: 2015-05-20 00:19:42

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Package ensembleBMA updated to version 5.1.2 with previous version 5.1.1 dated 2015-03-19

Title: Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts from ensemble forecasts and weather observations.
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann Gneiting, University of Washington.
Maintainer: Chris Fraley <fraley@u.washington.edu>

Diff between ensembleBMA versions 5.1.1 dated 2015-03-19 and 5.1.2 dated 2015-05-19

 CHANGELOG        |    2 ++
 DESCRIPTION      |    8 ++++----
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Package CHNOSZ updated to version 1.0.5 with previous version 1.0.3.1 dated 2014-02-12

Title: Chemical Thermodynamics and Activity Diagrams
Description: Functions and data sets to support chemical thermodynamic modeling in biochemistry and low-temperature geochemistry. The features include calculation of the standard molal thermodynamic properties and chemical affinities of reactions involving minerals and/or biomolecules; a database of thermodynamic properties of aqueous, crystalline and gaseous species; amino acid group additivity for the standard molal thermodynamic properties of neutral and ionized proteins; use of the revised Helgeson-Kirkham-Flowers equations of state for aqueous species; construction of equilibrium activity diagrams as a function of temperature, pressure, and chemical activities or fugacities of basis species.
Author: Jeffrey Dick
Maintainer: Jeffrey Dick <j3ffdick@gmail.com>

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New package ARTIVA with initial version 1.2.3
Package: ARTIVA
Type: Package
Title: Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model
Version: 1.2.3
Date: 2015-05-19
Author: S. Lebre and G. Lelandais.
Maintainer: S. Lebre <sophie.lebre@icube.unistra.fr>
Depends: MASS, igraph, gplots
Description: Reversible Jump MCMC (RJ-MCMC)sampling for approximating the posterior distribution of a time varying regulatory network, under the Auto Regressive TIme VArying (ARTIVA) model (for a detailed description of the algorithm, see Lebre et al. BMC Systems Biology, 2010). Starting from time-course gene expression measurements for a gene of interest (referred to as "target gene") and a set of genes (referred to as "parent genes") which may explain the expression of the target gene, the ARTIVA procedure identifies temporal segments for which a set of interactions occur between the "parent genes" and the "target gene". The time points that delimit the different temporal segments are referred to as changepoints (CP).
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Packaged: 2015-05-19 20:18:20 UTC; lebre
Repository: CRAN
NeedsCompilation: no
Date/Publication: 2015-05-20 01:09:27

More information about ARTIVA at CRAN
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New package rriskDistributions with initial version 2.1
Package: rriskDistributions
Type: Package
Title: Fitting Distributions to Given Data or Known Quantiles
Description: Collection of functions for fitting distributions to given data or by known quantiles. Two main functions fit.perc() and fit.cont() provide users a GUI that allows to choose a most appropriate distribution without any knowledge of the R syntax. Note, this package is a part of the 'rrisk' project.
License: GPL (>= 3)
LazyLoad: yes
URL: http://www.bfr.bund.de/cd/52158
Depends: R(>= 2.11.0)
Imports: mc2d, eha, msm, tcltk, tkrplot
SystemRequirements: Tcl/Tk (>= 8.5), Tktable (>= 2.9)
Authors@R: c(person(given="Natalia", family="Belgorodski", email="belgorodski@stat-up.de", role=c("aut"), comment="STAT-UP Statistical Consulting"), person(given="Matthias", family="Greiner", email="matthias.greiner@bfr.bund.de", role=c("aut", "cre"), comment="Federal Institute for Risk Assessment, Germany"), person(given="Kristin", family="Tolksdorf", email="kristin.tolksdorf@bfr.bund.de", role=c("aut"), comment="Federal Institute for Risk Assessment, Germany"), person(given="Katharina", family="Schueller", email="schueller@stat-up.de", role=c("aut"), comment="STAT-UP Statistical Consulting"), person(given="Matthias", family="Flor", email="Matthias.Flor@bfr.bund.de", role=c("ctb"), comment="Federal Institute for Risk Assessment, Germany"), person(given="Lutz", family="Göhring", email="lutz.goehring@gmx.de", role=c("ctb"), comment="Lutz Göhring Consulting"))
Version: 2.1
Date: 2015-05-11
Encoding: UTF-8
Collate: 'rriskDistributions-package.R' 'rriskDistributions_functions_v1.9.1.R'
NeedsCompilation: no
Packaged: 2015-05-13 07:36:13 UTC; flor
Author: Natalia Belgorodski [aut] (STAT-UP Statistical Consulting), Matthias Greiner [aut, cre] (Federal Institute for Risk Assessment, Germany), Kristin Tolksdorf [aut] (Federal Institute for Risk Assessment, Germany), Katharina Schueller [aut] (STAT-UP Statistical Consulting), Matthias Flor [ctb] (Federal Institute for Risk Assessment, Germany), Lutz Göhring [ctb] (Lutz Göhring Consulting)
Maintainer: Matthias Greiner <matthias.greiner@bfr.bund.de>
Repository: CRAN
Date/Publication: 2015-05-19 18:13:53

More information about rriskDistributions at CRAN
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