Wed, 21 Feb 2018

Package phyloTop updated to version 2.1.1 with previous version 2.1.0 dated 2017-10-10

Title: Calculating Topological Properties of Phylogenies
Description: Tools for calculating and viewing topological properties of phylogenetic trees.
Author: Michelle Kendall [aut, cre], Michael Boyd [aut], Caroline Colijn [aut]
Maintainer: Michelle Kendall <michelle.kendall@bdi.ox.ac.uk>

Diff between phyloTop versions 2.1.0 dated 2017-10-10 and 2.1.1 dated 2018-02-21

 DESCRIPTION       |   11 ++++++-----
 MD5               |    4 ++--
 build/partial.rdb |binary
 3 files changed, 8 insertions(+), 7 deletions(-)

More information about phyloTop at CRAN
Permanent link

Package funData updated to version 1.2 with previous version 1.1 dated 2017-06-10

Title: An S4 Class for Functional Data
Description: S4 classes for univariate and multivariate functional data with utility functions.
Author: Clara Happ [aut, cre]
Maintainer: Clara Happ <clara.happ@stat.uni-muenchen.de>

Diff between funData versions 1.1 dated 2017-06-10 and 1.2 dated 2018-02-21

 funData-1.1/funData/man/norm-funData-method.Rd                            |only
 funData-1.1/funData/man/norm-irregFunData-method.Rd                       |only
 funData-1.1/funData/man/norm-multiFunData-method.Rd                       |only
 funData-1.2/funData/DESCRIPTION                                           |   10 
 funData-1.2/funData/MD5                                                   |  233 ++---
 funData-1.2/funData/NAMESPACE                                             |    6 
 funData-1.2/funData/NEWS.md                                               |    9 
 funData-1.2/funData/R/funDataClass.R                                      |   54 -
 funData-1.2/funData/R/funDataMethods.R                                    |  135 +--
 funData-1.2/funData/R/names.R                                             |only
 funData-1.2/funData/R/plotMethods.R                                       |   68 +
 funData-1.2/funData/R/simulation.R                                        |   92 +-
 funData-1.2/funData/R/str.R                                               |only
 funData-1.2/funData/R/summary.R                                           |only
 funData-1.2/funData/README.md                                             |    2 
 funData-1.2/funData/man/Arith.funData.Rd                                  |   16 
 funData-1.2/funData/man/Math.funData.Rd                                   |    7 
 funData-1.2/funData/man/addError-funData-method.Rd                        |    1 
 funData-1.2/funData/man/addError-multiFunData-method.Rd                   |    1 
 funData-1.2/funData/man/addError.Rd                                       |    1 
 funData-1.2/funData/man/approxNA-funData-method.Rd                        |    1 
 funData-1.2/funData/man/approxNA.Rd                                       |    2 
 funData-1.2/funData/man/as.funData.Rd                                     |    1 
 funData-1.2/funData/man/as.irregFunData.Rd                                |    1 
 funData-1.2/funData/man/as.multiFunData.Rd                                |    1 
 funData-1.2/funData/man/dimSupp-funData-method.Rd                         |    1 
 funData-1.2/funData/man/dimSupp-irregFunData-method.Rd                    |    1 
 funData-1.2/funData/man/dimSupp-multiFunData-method.Rd                    |    1 
 funData-1.2/funData/man/dimSupp.Rd                                        |    1 
 funData-1.2/funData/man/eFun.Rd                                           |    1 
 funData-1.2/funData/man/eVal.Rd                                           |    1 
 funData-1.2/funData/man/efFourier.Rd                                      |    1 
 funData-1.2/funData/man/efPoly.Rd                                         |    1 
 funData-1.2/funData/man/efWiener.Rd                                       |    1 
 funData-1.2/funData/man/expand.int.Rd                                     |    1 
 funData-1.2/funData/man/extractObs-funData-method.Rd                      |    1 
 funData-1.2/funData/man/extractObs-irregFunData-method.Rd                 |    1 
 funData-1.2/funData/man/extractObs-multiFunData-method.Rd                 |    1 
 funData-1.2/funData/man/extractObs.Rd                                     |    2 
 funData-1.2/funData/man/extrapolateIrreg.Rd                               |    1 
 funData-1.2/funData/man/flipFuns-funData-funData-method.Rd                |    1 
 funData-1.2/funData/man/flipFuns-funData-irregFunData-method.Rd           |    1 
 funData-1.2/funData/man/flipFuns-irregFunData-irregFunData-method.Rd      |    1 
 funData-1.2/funData/man/flipFuns-multiFunData-multiFunData-method.Rd      |    1 
 funData-1.2/funData/man/flipFuns.Rd                                       |    2 
 funData-1.2/funData/man/funData-class.Rd                                  |   39 
 funData-1.2/funData/man/funData-constructor.Rd                            |    1 
 funData-1.2/funData/man/funData-setAs.Rd                                  |    2 
 funData-1.2/funData/man/getArgvals-funData-method.Rd                      |    1 
 funData-1.2/funData/man/getArgvals-irregFunData-method.Rd                 |    1 
 funData-1.2/funData/man/getArgvals-multiFunData-method.Rd                 |    1 
 funData-1.2/funData/man/getArgvals.Rd                                     |    1 
 funData-1.2/funData/man/getX-funData-method.Rd                            |    1 
 funData-1.2/funData/man/getX-irregFunData-method.Rd                       |    1 
 funData-1.2/funData/man/getX-multiFunData-method.Rd                       |    1 
 funData-1.2/funData/man/ggplot.Rd                                         |    1 
 funData-1.2/funData/man/ggplot.funData.Rd                                 |    3 
 funData-1.2/funData/man/ggplot.irregFunData.Rd                            |    3 
 funData-1.2/funData/man/ggplot.multiFunData.Rd                            |    4 
 funData-1.2/funData/man/integrate-funData-method.Rd                       |    1 
 funData-1.2/funData/man/integrate-irregFunData-method.Rd                  |    1 
 funData-1.2/funData/man/integrate-multiFunData-method.Rd                  |    1 
 funData-1.2/funData/man/integrate.Rd                                      |    2 
 funData-1.2/funData/man/integrate3D.Rd                                    |    1 
 funData-1.2/funData/man/irregFunData-class.Rd                             |   40 
 funData-1.2/funData/man/irregFunData-constructor.Rd                       |    1 
 funData-1.2/funData/man/irregFunData-setAs.Rd                             |    1 
 funData-1.2/funData/man/meanFunction-funData-method.Rd                    |    1 
 funData-1.2/funData/man/meanFunction-irregFunData-method.Rd               |    1 
 funData-1.2/funData/man/meanFunction-multiFunData-method.Rd               |    1 
 funData-1.2/funData/man/meanFunction.Rd                                   |    2 
 funData-1.2/funData/man/multiFunData-class.Rd                             |   36 
 funData-1.2/funData/man/multiFunData-constructor.Rd                       |    1 
 funData-1.2/funData/man/nObs-funData-method.Rd                            |    1 
 funData-1.2/funData/man/nObs-irregFunData-method.Rd                       |    1 
 funData-1.2/funData/man/nObs-multiFunData-method.Rd                       |    1 
 funData-1.2/funData/man/nObs.Rd                                           |    1 
 funData-1.2/funData/man/nObsPoints-funData-method.Rd                      |    1 
 funData-1.2/funData/man/nObsPoints-irregFunData-method.Rd                 |    1 
 funData-1.2/funData/man/nObsPoints-multiFunData-method.Rd                 |    1 
 funData-1.2/funData/man/nObsPoints.Rd                                     |    2 
 funData-1.2/funData/man/norm-funData-missing-method.Rd                    |only
 funData-1.2/funData/man/norm-irregFunData-missing-method.Rd               |only
 funData-1.2/funData/man/norm-multiFunData-missing-method.Rd               |only
 funData-1.2/funData/man/norm.Rd                                           |    5 
 funData-1.2/funData/man/norm.funData.Rd                                   |    1 
 funData-1.2/funData/man/norm.irregFunData.Rd                              |    1 
 funData-1.2/funData/man/plot.funData.Rd                                   |    4 
 funData-1.2/funData/man/plot.irregFunData.Rd                              |    3 
 funData-1.2/funData/man/plot.multiFunData.Rd                              |   12 
 funData-1.2/funData/man/print.funData.Rd                                  |    1 
 funData-1.2/funData/man/print.irregFunData.Rd                             |    1 
 funData-1.2/funData/man/scalarProduct-funData-funData-method.Rd           |    1 
 funData-1.2/funData/man/scalarProduct-funData-irregFunData-method.Rd      |    1 
 funData-1.2/funData/man/scalarProduct-irregFunData-funData-method.Rd      |    1 
 funData-1.2/funData/man/scalarProduct-irregFunData-irregFunData-method.Rd |    1 
 funData-1.2/funData/man/scalarProduct-multiFunData-multiFunData-method.Rd |    1 
 funData-1.2/funData/man/scalarProduct.Rd                                  |    1 
 funData-1.2/funData/man/setArgvals-funData-method.Rd                      |    1 
 funData-1.2/funData/man/setArgvals-irregFunData-method.Rd                 |    1 
 funData-1.2/funData/man/setArgvals-multiFunData-method.Rd                 |    1 
 funData-1.2/funData/man/setX-funData-method.Rd                            |    1 
 funData-1.2/funData/man/setX-irregFunData-method.Rd                       |    1 
 funData-1.2/funData/man/setX-multiFunData-method.Rd                       |    1 
 funData-1.2/funData/man/simFunData.Rd                                     |    1 
 funData-1.2/funData/man/simMultiFunData.Rd                                |    1 
 funData-1.2/funData/man/simMultiSplit.Rd                                  |    1 
 funData-1.2/funData/man/simMultiWeight.Rd                                 |    1 
 funData-1.2/funData/man/sparsify-funData-method.Rd                        |    1 
 funData-1.2/funData/man/sparsify-multiFunData-method.Rd                   |    1 
 funData-1.2/funData/man/sparsify.Rd                                       |    2 
 funData-1.2/funData/man/tensorProduct-funData-method.Rd                   |    1 
 funData-1.2/funData/man/tensorProduct.Rd                                  |    2 
 funData-1.2/funData/tests/testthat/outputs                                |only
 funData-1.2/funData/tests/testthat/test_funDataClass.R                    |    6 
 funData-1.2/funData/tests/testthat/test_funDataMethods.R                  |  433 ++++------
 funData-1.2/funData/tests/testthat/test_plotMethods.R                     |  137 ++-
 funData-1.2/funData/tests/testthat/test_simulation.R                      |  142 ++-
 118 files changed, 967 insertions(+), 624 deletions(-)

More information about funData at CRAN
Permanent link

Package BOIN updated to version 2.6 with previous version 2.4 dated 2016-08-08

Title: Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
Description: The Bayesian optimal interval (BOIN) design is a novel phase I clinical trial design for finding the maximum tolerated dose (MTD). It can be used to design both single-agent and drug-combination trials. The BOIN design is motivated by the top priority and concern of clinicians when testing a new drug, which is to effectively treat patients and minimize the chance of exposing them to subtherapeutic or overly toxic doses. The prominent advantage of the BOIN design is that it achieves simplicity and superior performance at the same time. The BOIN design is algorithm-based and can be implemented in a simple way similar to the traditional 3+3 design. The BOIN design yields an average performance that is comparable to that of the continual reassessment method (CRM, one of the best model-based designs) in terms of selecting the MTD, but has a substantially lower risk of assigning patients to subtherapeutic or overly toxic doses.
Author: Ying Yuan and Suyu Liu
Maintainer: Ying Yuan <yyuan@mdanderson.org>

Diff between BOIN versions 2.4 dated 2016-08-08 and 2.6 dated 2018-02-21

 BOIN-2.4/BOIN/R/get.oc.comb.phase12.R    |only
 BOIN-2.4/BOIN/man/get.oc.comb.phase12.Rd |only
 BOIN-2.6/BOIN/DESCRIPTION                |   11 
 BOIN-2.6/BOIN/MD5                        |   40 +-
 BOIN-2.6/BOIN/NAMESPACE                  |   14 
 BOIN-2.6/BOIN/R/BOIN.R                   |    6 
 BOIN-2.6/BOIN/R/get.boundary.R           |  234 +++++-------
 BOIN-2.6/BOIN/R/get.oc.R                 |  297 ++++++++-------
 BOIN-2.6/BOIN/R/get.oc.comb.R            |  595 +++++++++++++++----------------
 BOIN-2.6/BOIN/R/next.comb.R              |   49 +-
 BOIN-2.6/BOIN/R/next.subtrial.R          |   71 +--
 BOIN-2.6/BOIN/R/plot.boin.R              |only
 BOIN-2.6/BOIN/R/select.mtd.R             |  234 ++++++------
 BOIN-2.6/BOIN/R/select.mtd.comb.R        |   94 ++--
 BOIN-2.6/BOIN/R/summary.boin.R           |only
 BOIN-2.6/BOIN/man/get.boundary.Rd        |   83 ++--
 BOIN-2.6/BOIN/man/get.oc.Rd              |   98 +++--
 BOIN-2.6/BOIN/man/get.oc.comb.Rd         |  127 ++++--
 BOIN-2.6/BOIN/man/next.comb.Rd           |   46 +-
 BOIN-2.6/BOIN/man/next.subtrial.Rd       |   42 +-
 BOIN-2.6/BOIN/man/plot.boin.Rd           |only
 BOIN-2.6/BOIN/man/select.mtd.Rd          |   50 +-
 BOIN-2.6/BOIN/man/select.mtd.comb.Rd     |   63 +--
 BOIN-2.6/BOIN/man/summary.boin.Rd        |only
 24 files changed, 1163 insertions(+), 991 deletions(-)

More information about BOIN at CRAN
Permanent link

Package VeryLargeIntegers updated to version 0.1.6 with previous version 0.1.5 dated 2017-12-15

Title: Store and Operate with Arbitrarily Large Integers
Description: Multi-precission library that allows to store and operate with arbitrarily big integers without loss of precision. It includes a large list of tools to work with them, like: - Arithmetic and logic operators - Modular-arithmetic operators - Computer Number Theory utilities - Probabilistic primality tests - Factorization algorithms - Random generators of diferent types of integers.
Author: Javier Leiva Cuadrado
Maintainer: Javier Leiva Cuadrado <jleivacuadrado@gmail.com>

Diff between VeryLargeIntegers versions 0.1.5 dated 2017-12-15 and 0.1.6 dated 2018-02-21

 DESCRIPTION |   10 +++++-----
 MD5         |    6 +++---
 R/vli.R     |    2 +-
 man/vli.Rd  |    2 +-
 4 files changed, 10 insertions(+), 10 deletions(-)

More information about VeryLargeIntegers at CRAN
Permanent link

Package rroad updated to version 0.0.5 with previous version 0.0.4 dated 2017-10-18

Title: Road Condition Analysis
Description: Computation of the International Roughness Index (IRI) given a longitudinal road profile. The IRI can be calculated for a single road segment or for a sequence of segments with a fixed length (e. g. 100m). For the latter, an overlap of the segments can be selected. The IRI and likewise the algorithms for its determination are defined in Sayers, Michael W; Gillespie, Thomas D; Queiroz, Cesar A.V. 1986. The International Road Roughness Experiment (IRRE) : establishing correlation and a calibration standard for measurements. World Bank technical paper; no. WTP 45. Washington, DC : The World Bank. (ISBN 0-8213-0589-1) available from <http://documents.worldbank.org/curated/en/326081468740204115>.
Author: Viliam Simko [cre, aut], Kevin Laubis [aut]
Maintainer: Viliam Simko <viliam.simko@gmail.com>

Diff between rroad versions 0.0.4 dated 2017-10-18 and 0.0.5 dated 2018-02-21

 DESCRIPTION                |   27 ++++++++++-----------
 MD5                        |   12 ++++-----
 build/vignette.rds         |binary
 inst/doc/RoadFeatures.R    |   55 ++++++++++++++++++++++++++++----------------
 inst/doc/RoadFeatures.Rmd  |   56 ++++++++++++++++++++++++++++-----------------
 inst/doc/RoadFeatures.html |   46 ++++++++++++++++++------------------
 vignettes/RoadFeatures.Rmd |   56 ++++++++++++++++++++++++++++-----------------
 7 files changed, 149 insertions(+), 103 deletions(-)

More information about rroad at CRAN
Permanent link

Package sgmcmc updated to version 0.2.1 with previous version 0.2.0 dated 2017-09-26

Title: Stochastic Gradient Markov Chain Monte Carlo
Description: Provides functions that performs popular stochastic gradient Markov chain Monte Carlo (SGMCMC) methods on user specified models. The required gradients are automatically calculated using 'TensorFlow' <https://www.tensorflow.org/>, an efficient library for numerical computation. This means only the log likelihood and log prior functions need to be specified. The methods implemented include stochastic gradient Langevin dynamics (SGLD), stochastic gradient Hamiltonian Monte Carlo (SGHMC), stochastic gradient Nose-Hoover thermostat (SGNHT) and their respective control variate versions for increased efficiency. References: M. Welling, Y. W. Teh (2011) <http://www.icml-2011.org/papers/398_icmlpaper.pdf>; T. Chen, E. B. Fox, C. E. Guestrin (2014) <arXiv:1402.4102>; N. Ding, Y. Fang, R. Babbush, C. Chen, R. D. Skeel, H. Neven (2014) <https://papers.nips.cc/paper/5592-bayesian-sampling-using-stochastic-gradient-thermostats>; J. Baker, P. Fearnhead, E. B. Fox, C. Nemeth (2017) <arXiv:1706.05439>.
Author: Jack Baker [aut, cre, cph], Christopher Nemeth [aut, cph], Paul Fearnhead [aut, cph], Emily B. Fox [aut, cph], STOR-i [cph]
Maintainer: Jack Baker <j.baker1@lancaster.ac.uk>

Diff between sgmcmc versions 0.2.0 dated 2017-09-26 and 0.2.1 dated 2018-02-21

 DESCRIPTION                      |    6 
 MD5                              |   33 +-
 NEWS.md                          |    4 
 R/dynamics.R                     |   97 ++++++-
 R/setup.R                        |   25 +
 R/update.R                       |   16 -
 build/vignette.rds               |binary
 inst/doc/gaussMixture.html       |  400 +++++++++++++++++++++----------
 inst/doc/logisticRegression.html |  400 +++++++++++++++++++++----------
 inst/doc/mvGauss.Rmd             |    2 
 inst/doc/mvGauss.html            |  365 ++++++++++++++++++++--------
 inst/doc/nn.html                 |  493 +++++++++++++++++++++++++--------------
 inst/doc/sgmcmc.Rmd              |    2 
 inst/doc/sgmcmc.html             |  370 ++++++++++++++++++++---------
 tests/testthat/testOptional.R    |    6 
 tests/testthat/testSparse.R      |only
 vignettes/mvGauss.Rmd            |    2 
 vignettes/sgmcmc.Rmd             |    2 
 18 files changed, 1542 insertions(+), 681 deletions(-)

More information about sgmcmc at CRAN
Permanent link

Package word.alignment updated to version 1.0.9 with previous version 1.0.8 dated 2018-01-24

Title: Computing Word Alignment Using IBM Model 1 (and Symmetrization) for a Given Parallel Corpus and Its Evaluation
Description: For a given Sentence-Aligned Parallel Corpus, it aligns words for each sentence pair. It considers one-to-many and symmetrization alignments. Moreover, it evaluates the quality of word alignment based on this package and some other software. It also builds an automatic dictionary of two languages based on given parallel corpus.
Author: Neda Daneshagr and Majid Sarmad.
Maintainer: Neda Daneshgar<ne_da978@stu-mail.um.ac.ir>

Diff between word.alignment versions 1.0.8 dated 2018-01-24 and 1.0.9 dated 2018-02-21

 DESCRIPTION                   |    8 +++---
 MD5                           |   36 +++++++++++++--------------
 R/Evaluation1.R               |    4 +--
 R/ExcelToR.R                  |   13 +++------
 R/Symmetrization.R            |   10 +++----
 R/align_test.set.R            |   24 +++++++++---------
 R/cons.agn.R                  |    4 +--
 R/mydictionary.R              |   20 +++++++--------
 R/prepareData.R               |   10 +++----
 R/word_alignIBM1.R            |    4 +--
 man/Evaluation1.Rd            |    6 ++--
 man/ExcelToR.Rd               |   14 +++-------
 man/Symmetrization.Rd         |   34 ++++++++++++-------------
 man/align_test.set.Rd         |   46 +++++++++++++++++-----------------
 man/cons.agn.Rd               |   56 +++++++++++++++++++++---------------------
 man/mydictionary.Rd           |   38 +++++++++++++++-------------
 man/prepareData.Rd            |   32 ++++++++++++------------
 man/word.alignment-package.Rd |    8 +++---
 man/word_alignIBM1.Rd         |   35 +++++++++++++-------------
 19 files changed, 197 insertions(+), 205 deletions(-)

More information about word.alignment at CRAN
Permanent link

Package matrixsampling updated to version 1.1.0 with previous version 1.0.0 dated 2017-12-11

Title: Simulations of Matrix Variate Distributions
Description: Provides samplers for various matrix variate distributions: Wishart, inverse-Wishart, normal, t, inverted-t, Beta type I and Beta type II. Allows to simulate the noncentral Wishart distribution without the integer restriction on the degrees of freedom.
Author: Stéphane Laurent
Maintainer: Stéphane Laurent <laurent_step@yahoo.fr>

Diff between matrixsampling versions 1.0.0 dated 2017-12-11 and 1.1.0 dated 2018-02-21

 DESCRIPTION  |    8 ++++----
 MD5          |   14 ++++++++++----
 NEWS.md      |    4 ++++
 R/internal.R |    4 +---
 R/wishart.R  |   22 ++++++++++++----------
 inst         |only
 6 files changed, 31 insertions(+), 21 deletions(-)

More information about matrixsampling at CRAN
Permanent link

Package MLML2R updated to version 0.2.0 with previous version 0.1.0 dated 2018-02-13

Title: Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions
Description: Maximum likelihood estimates (MLE) of the proportions of 5-mC and 5-hmC in the DNA using information from BS-conversion, TAB-conversion, and oxBS-conversion methods. One can use information from all three methods or any combination of two of them. Estimates are based on Binomial model by Qu et al. (2013) <doi:10.1093/bioinformatics/btt459> and Kiihl et al. (2018, to appear).
Author: Samara Kiihl [aut, cre], Maria Jose Martinez-Garrido [aut], Arce Domingo-Relloso [aut], Jose Bermudez [aut], Maria Tellez-Plaza [aut]
Maintainer: Samara Kiihl <samara@ime.unicamp.br>

Diff between MLML2R versions 0.1.0 dated 2018-02-13 and 0.2.0 dated 2018-02-21

 MLML2R-0.1.0/MLML2R/inst/doc/vignette.html |only
 MLML2R-0.2.0/MLML2R/DESCRIPTION            |   17 ++++---
 MLML2R-0.2.0/MLML2R/MD5                    |   16 +++----
 MLML2R-0.2.0/MLML2R/R/MLML.R               |    2 
 MLML2R-0.2.0/MLML2R/build/vignette.rds     |binary
 MLML2R-0.2.0/MLML2R/inst/doc/vignette.R    |   19 ++++----
 MLML2R-0.2.0/MLML2R/inst/doc/vignette.Rmd  |   64 ++++++++++++++++-------------
 MLML2R-0.2.0/MLML2R/inst/doc/vignette.pdf  |only
 MLML2R-0.2.0/MLML2R/man/MLML.Rd            |    2 
 MLML2R-0.2.0/MLML2R/vignettes/vignette.Rmd |   64 ++++++++++++++++-------------
 10 files changed, 102 insertions(+), 82 deletions(-)

More information about MLML2R at CRAN
Permanent link

Package chunkR updated to version 1.1.1 with previous version 1.1.0 dated 2018-01-21

Title: Read Tables in Chunks
Description: Read tables chunk by chunk using a C++ backend and a simple R interface.
Author: Leandro Roser [aut, cre]
Maintainer: Leandro Roser <learoser@gmail.com>

Diff between chunkR versions 1.1.0 dated 2018-01-21 and 1.1.1 dated 2018-02-21

 chunkR-1.1.0/chunkR/R/auxiliar.R                     |only
 chunkR-1.1.0/chunkR/src/auxiliar.cpp                 |only
 chunkR-1.1.1/chunkR/DESCRIPTION                      |   14 -
 chunkR-1.1.1/chunkR/MD5                              |   38 +--
 chunkR-1.1.1/chunkR/NEWS                             |    6 
 chunkR-1.1.1/chunkR/R/RcppExports.R                  |   16 -
 chunkR-1.1.1/chunkR/R/auxiliary.R                    |only
 chunkR-1.1.1/chunkR/R/classes.R                      |    2 
 chunkR-1.1.1/chunkR/R/constructors.R                 |   51 ++--
 chunkR-1.1.1/chunkR/R/methods.R                      |   67 ++++-
 chunkR-1.1.1/chunkR/README.md                        |  147 ++++++++---
 chunkR-1.1.1/chunkR/inst/include/chunkR.h            |   32 +-
 chunkR-1.1.1/chunkR/man/chunkR.Rd                    |    4 
 chunkR-1.1.1/chunkR/man/chunkR_devel.Rd              |    2 
 chunkR-1.1.1/chunkR/man/chunker-methods.Rd           |   16 +
 chunkR-1.1.1/chunkR/man/chunker.Rd                   |   23 +
 chunkR-1.1.1/chunkR/man/initialize-chunker-method.Rd |    2 
 chunkR-1.1.1/chunkR/src/RcppExports.cpp              |   44 ++-
 chunkR-1.1.1/chunkR/src/auxiliary.cpp                |only
 chunkR-1.1.1/chunkR/src/chunkR.cpp                   |  236 +++++++++++--------
 chunkR-1.1.1/chunkR/src/init.cpp                     |   65 ++---
 chunkR-1.1.1/chunkR/tests/testthat/test.chunkR.R     |  104 +++++++-
 22 files changed, 601 insertions(+), 268 deletions(-)

More information about chunkR at CRAN
Permanent link

Package RAdwords updated to version 0.1.15 with previous version 0.1.14 dated 2017-10-02

Title: Loading Google Adwords Data into R
Description: Aims at loading Google Adwords data into R. Adwords is an online advertising service that enables advertisers to display advertising copy to web users (see <https://developers.google.com/adwords/> for more information). Therefore the package implements three main features. First, the package provides an authentication process for R with the Google Adwords API (see <https://developers.google.com/adwords/api/> for more information) via OAUTH2. Second, the package offers an interface to apply the Adwords query language in R and query the Adwords API with ad-hoc reports. Third, the received data are transformed into suitable data formats for further data processing and data analysis.
Author: Johannes Burkhardt <johannes.burkhardt@gmail.com>, Matthias Bannert <matthias.bannert@gmail.com>
Maintainer: Johannes Burkhardt <johannes.burkhardt@gmail.com>

Diff between RAdwords versions 0.1.14 dated 2017-10-02 and 0.1.15 dated 2018-02-21

 DESCRIPTION            |    6 +--
 LICENSE                |    2 -
 MD5                    |   80 ++++++++++++++++++++++++++++++++++++++-----------
 NEWS                   |    6 +++
 R/doAuth.R             |    3 -
 R/getData.R            |    4 +-
 R/loadToken.R          |   14 +-------
 R/metrics.R            |    8 ++--
 R/reports.R            |   18 ++++-------
 R/statement.R          |   43 ++++++++++++++------------
 R/transformData.R      |    9 +++--
 README.md              |   10 +++---
 inst/extdata/api201710 |only
 man/RAdwords.Rd        |   16 ++++-----
 man/getData.Rd         |    4 +-
 man/metrics.Rd         |    4 +-
 man/reports.Rd         |    4 +-
 man/statement.Rd       |   18 +++++------
 man/transformData.Rd   |    4 +-
 19 files changed, 148 insertions(+), 105 deletions(-)

More information about RAdwords at CRAN
Permanent link

Package RcmdrPlugin.KMggplot2 updated to version 0.2-5 with previous version 0.2-4 dated 2016-12-20

Title: R Commander Plug-in for Data Visualization with 'ggplot2'
Description: A GUI front-end for 'ggplot2' supports Kaplan-Meier plot, histogram, Q-Q plot, box plot, errorbar plot, scatter plot, line chart, pie chart, bar chart, contour plot, and distribution plot.
Author: Triad sou. and Kengo NAGASHIMA
Maintainer: Triad sou. <triadsou@gmail.com>

Diff between RcmdrPlugin.KMggplot2 versions 0.2-4 dated 2016-12-20 and 0.2-5 dated 2018-02-21

 DESCRIPTION                       |   12 ++++++------
 MD5                               |   24 ++++++++++++------------
 NEWS                              |    7 ++++++-
 NEWS.md                           |    5 +++++
 R/aaa-package.r                   |    1 +
 R/plot-aaa.r                      |    2 +-
 R/plot-gbox.r                     |    2 +-
 R/plot-gkm.r                      |    4 ++--
 R/plot-gqq.r                      |    2 +-
 build/partial.rdb                 |binary
 inst/doc/extrafont.html           |    4 ++--
 inst/doc/geom-stepribbon.html     |    4 ++--
 inst/doc/plot-km-requirement.html |    4 ++--
 13 files changed, 41 insertions(+), 30 deletions(-)

More information about RcmdrPlugin.KMggplot2 at CRAN
Permanent link

Package BIOMASS updated to version 1.2 with previous version 1.1 dated 2017-01-05

Title: Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests
Description: Contains functions to estimate aboveground biomass/carbon and its uncertainty in tropical forests. These functions allow to (1) retrieve and to correct taxonomy, (2) estimate wood density and its uncertainty, (3) construct height-diameter models, (4) estimate the above-ground biomass/carbon at the stand level with associated uncertainty. To cite BIOMASS, please use citation("BIOMASS").
Author: Maxime REJOU-MECHAIN, Ariane TANGUY, Camille PIPONIOT, Jerome CHAVE, Bruno HERAULT
Maintainer: Maxime REJOU-MECHAIN <maxime.rejou@gmail.com>

Diff between BIOMASS versions 1.1 dated 2017-01-05 and 1.2 dated 2018-02-21

 DESCRIPTION                   |   10 +++++-----
 MD5                           |    8 ++++----
 build/partial.rdb             |binary
 build/vignette.rds            |binary
 inst/doc/VignetteBiomass.html |   24 ++++++++++++------------
 5 files changed, 21 insertions(+), 21 deletions(-)

More information about BIOMASS at CRAN
Permanent link

Tue, 20 Feb 2018

Package reactR updated to version 0.2.0 with previous version 0.1.4 dated 2017-11-22

Title: React Helpers
Description: Make it easy to use 'React' in R with helper dependency functions, embedded 'Babel' transpiler, and examples.
Author: Facebook Inc [aut, cph] (React library in lib, https://facebook.github.io/react; see AUTHORS for full list of contributors), Kent Russell [aut, cre] (R interface)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>

Diff between reactR versions 0.1.4 dated 2017-11-22 and 0.2.0 dated 2018-02-20

 DESCRIPTION                     |    8 
 LICENSE                         |    2 
 MD5                             |   35 ++-
 NAMESPACE                       |    1 
 NEWS.md                         |    5 
 R/dependencies.R                |   24 ++
 R/meta.R                        |    2 
 README.md                       |    8 
 build/vignette.rds              |binary
 inst/doc/intro_reactR.html      |    8 
 inst/examples/antd.R            |   10 -
 inst/examples/bizcharts.R       |only
 inst/examples/blueprint.R       |    8 
 inst/examples/semiotic.R        |    6 
 inst/www/core-js                |only
 inst/www/react/react-dom.min.js |  364 ++++++++++++++++++++--------------------
 inst/www/react/react.min.js     |   28 +--
 man/html_dependency_corejs.Rd   |only
 man/html_dependency_react.Rd    |    5 
 19 files changed, 277 insertions(+), 237 deletions(-)

More information about reactR at CRAN
Permanent link

Package phenomap updated to version 1.2.0 with previous version 1.0.1 dated 2017-11-16

Title: Projecting Satellite-Derived Phenology in Space
Description: This takes in a series of multi-layer raster files and returns a phenology projection raster, following methodologies described in John (2016) <https://etda.libraries.psu.edu/catalog/13521clj5135>.
Author: Christian John [aut, cre]
Maintainer: Christian John <cjohn@ucdavis.edu>

Diff between phenomap versions 1.0.1 dated 2017-11-16 and 1.2.0 dated 2018-02-20

 DESCRIPTION                          |   12 -
 MD5                                  |   17 +-
 NAMESPACE                            |    2 
 NEWS.md                              |only
 R/mapPheno.R                         |  253 +++++++++++++++++++++++------------
 R/mapTrend.R                         |only
 inst/extdata/Sample_Greenup_2011.tif |only
 inst/extdata/Sample_Greenup_2012.tif |only
 inst/extdata/Sample_Greenup_2013.tif |only
 inst/extdata/Sample_Greenup_2014.tif |only
 inst/extdata/Sample_Greenup_2015.tif |only
 inst/extdata/Sample_Greenup_2016.tif |only
 man/mapPheno.Rd                      |   18 ++
 man/mapTrend.Rd                      |only
 14 files changed, 209 insertions(+), 93 deletions(-)

More information about phenomap at CRAN
Permanent link

Package VennDiagram updated to version 1.6.19 with previous version 1.6.18 dated 2017-11-21

Title: Generate High-Resolution Venn and Euler Plots
Description: A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Author: Hanbo Chen
Maintainer: Paul Boutros <Paul.Boutros@oicr.on.ca>

Diff between VennDiagram versions 1.6.18 dated 2017-11-21 and 1.6.19 dated 2018-02-20

 DESCRIPTION             |    8 ++++----
 MD5                     |   12 ++++++------
 NEWS                    |    6 ++++++
 R/draw.pairwise.venn.R  |    6 ++++--
 R/draw.quad.venn.R      |    6 ++++--
 R/draw.quintuple.venn.R |    6 ++++--
 R/draw.triple.venn.R    |    6 ++++--
 7 files changed, 32 insertions(+), 18 deletions(-)

More information about VennDiagram at CRAN
Permanent link

Package SpatPCA updated to version 1.2.0.0 with previous version 1.1.1.2 dated 2017-03-17

Title: Regularized Principal Component Analysis for Spatial Data
Description: Provide regularized principal component analysis incorporating smoothness, sparseness and orthogonality of eigenfunctions by using the alternating direction method of multipliers algorithm (Wang and Huang, 2017, <DOI:10.1080/10618600.2016.1157483>). The method can be applied to either regularly or irregularly spaced data, including 1D, 2D, and 3D.
Author: Wen-Ting Wang, Hsin-Cheng Huang
Maintainer: Wen-Ting Wang <egpivo@gmail.com>

Diff between SpatPCA versions 1.1.1.2 dated 2017-03-17 and 1.2.0.0 dated 2018-02-20

 SpatPCA-1.1.1.2/SpatPCA/README.md               |only
 SpatPCA-1.2.0.0/SpatPCA/DESCRIPTION             |   14 +-
 SpatPCA-1.2.0.0/SpatPCA/MD5                     |   20 +--
 SpatPCA-1.2.0.0/SpatPCA/R/RcppExports.R         |   10 +
 SpatPCA-1.2.0.0/SpatPCA/R/SpatPCA.R             |   48 +++++---
 SpatPCA-1.2.0.0/SpatPCA/man/SpatPCA-package.Rd  |    6 -
 SpatPCA-1.2.0.0/SpatPCA/man/SpatPCAinternal4.Rd |only
 SpatPCA-1.2.0.0/SpatPCA/man/spatpca.Rd          |   24 +++-
 SpatPCA-1.2.0.0/SpatPCA/src/Makevars            |    4 
 SpatPCA-1.2.0.0/SpatPCA/src/Makevars.win        |    5 
 SpatPCA-1.2.0.0/SpatPCA/src/RcppExports.cpp     |   30 ++++-
 SpatPCA-1.2.0.0/SpatPCA/src/rcpp_SpatPCA.cpp    |  139 +++++++++++++-----------
 12 files changed, 190 insertions(+), 110 deletions(-)

More information about SpatPCA at CRAN
Permanent link

Package DClusterm updated to version 0.2 with previous version 0.1 dated 2017-02-12

Title: Model-Based Detection of Disease Clusters
Description: Model-based methods for the detection of disease clusters using GLMs, GLMMs and zero-inflated models.
Author: Virgilio Gomez-Rubio, Paula Esther Moraga Serrano, Barry Rowlingson
Maintainer: Virgilio Gomez-Rubio <virgilio.gomez@uclm.es>

Diff between DClusterm versions 0.1 dated 2017-02-12 and 0.2 dated 2018-02-20

 DClusterm-0.1/DClusterm/R/Functions1PAU.R                      |only
 DClusterm-0.1/DClusterm/R/Functions2PAU.R                      |only
 DClusterm-0.1/DClusterm/R/glm.isclusterPAU.R                   |only
 DClusterm-0.1/DClusterm/inst/doc/jss_paper.R                   |only
 DClusterm-0.1/DClusterm/inst/doc/jss_paper.Rnw                 |only
 DClusterm-0.1/DClusterm/inst/doc/jss_paper.pdf                 |only
 DClusterm-0.1/DClusterm/man/PlotClustersNoOverlap.Rd           |only
 DClusterm-0.1/DClusterm/vignettes/jss_paper.Rnw                |only
 DClusterm-0.2/DClusterm/DESCRIPTION                            |   17 
 DClusterm-0.2/DClusterm/MD5                                    |   63 +--
 DClusterm-0.2/DClusterm/NAMESPACE                              |   50 +-
 DClusterm-0.2/DClusterm/R/Functions1.R                         |only
 DClusterm-0.2/DClusterm/R/Functions2.R                         |only
 DClusterm-0.2/DClusterm/R/glm.iscluster.R                      |only
 DClusterm-0.2/DClusterm/R/knutils.R                            |  165 ++++----
 DClusterm-0.2/DClusterm/build/vignette.rds                     |binary
 DClusterm-0.2/DClusterm/data/NY8.RData                         |binary
 DClusterm-0.2/DClusterm/data/NY8_clusters.RData                |only
 DClusterm-0.2/DClusterm/data/Navarre.RData                     |binary
 DClusterm-0.2/DClusterm/data/brainNM.RData                     |binary
 DClusterm-0.2/DClusterm/data/brainNM_clusters.RData            |only
 DClusterm-0.2/DClusterm/data/datalist                          |only
 DClusterm-0.2/DClusterm/inst/doc/DClusterm.R                   |only
 DClusterm-0.2/DClusterm/inst/doc/DClusterm.Rnw                 |only
 DClusterm-0.2/DClusterm/inst/doc/DClusterm.pdf                 |only
 DClusterm-0.2/DClusterm/man/CalcStatClusterGivenCenter.Rd      |   10 
 DClusterm-0.2/DClusterm/man/CalcStatsAllClusters.Rd            |   10 
 DClusterm-0.2/DClusterm/man/CreateGridDClusterm.Rd             |    2 
 DClusterm-0.2/DClusterm/man/DetectClustersModel.Rd             |   45 +-
 DClusterm-0.2/DClusterm/man/NY8.Rd                             |   14 
 DClusterm-0.2/DClusterm/man/SelectStatsAllClustersNoOverlap.Rd |    9 
 DClusterm-0.2/DClusterm/man/SetVbleCluster.Rd                  |    2 
 DClusterm-0.2/DClusterm/man/brainNM.Rd                         |   13 
 DClusterm-0.2/DClusterm/man/get.allknclusters.Rd               |only
 DClusterm-0.2/DClusterm/man/get.stclusters.Rd                  |   19 
 DClusterm-0.2/DClusterm/man/glmAndZIP.iscluster.Rd             |   14 
 DClusterm-0.2/DClusterm/man/knbinary.Rd                        |   18 
 DClusterm-0.2/DClusterm/man/mergeknclusters.Rd                 |   17 
 DClusterm-0.2/DClusterm/man/slimknclusters.Rd                  |    6 
 DClusterm-0.2/DClusterm/vignettes/DClusterm.Rnw                |only
 DClusterm-0.2/DClusterm/vignettes/DClusterm.bib                |  202 ++++++++--
 DClusterm-0.2/DClusterm/vignettes/Makefile                     |    5 
 42 files changed, 466 insertions(+), 215 deletions(-)

More information about DClusterm at CRAN
Permanent link

Package fpp2 updated to version 2.2 with previous version 2.1 dated 2017-05-26

Title: Data for "Forecasting: Principles and Practice" (2nd Edition)
Description: All data sets required for the examples and exercises in the book "Forecasting: principles and practice" by Rob J Hyndman and George Athanasopoulos <http://OTexts.org/fpp2/>. All packages required to run the examples are also loaded.
Author: Rob Hyndman [aut, cre, cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>

Diff between fpp2 versions 2.1 dated 2017-05-26 and 2.2 dated 2018-02-20

 fpp2-2.1/fpp2/ChangeLog            |only
 fpp2-2.1/fpp2/data/vn.rda          |only
 fpp2-2.1/fpp2/man/vn.Rd            |only
 fpp2-2.2/fpp2/DESCRIPTION          |   12 ++--
 fpp2-2.2/fpp2/MD5                  |   95 +++++++++++++++++++------------------
 fpp2-2.2/fpp2/NEWS.md              |only
 fpp2-2.2/fpp2/R/fpp-package.R      |   88 ++++++++++++++++++----------------
 fpp2-2.2/fpp2/README.md            |    9 +--
 fpp2-2.2/fpp2/data/a10.rda         |binary
 fpp2-2.2/fpp2/data/arrivals.rda    |binary
 fpp2-2.2/fpp2/data/ausair.rda      |binary
 fpp2-2.2/fpp2/data/ausbeer.rda     |binary
 fpp2-2.2/fpp2/data/auscafe.rda     |binary
 fpp2-2.2/fpp2/data/austa.rda       |binary
 fpp2-2.2/fpp2/data/austourists.rda |binary
 fpp2-2.2/fpp2/data/calls.rda       |binary
 fpp2-2.2/fpp2/data/debitcards.rda  |binary
 fpp2-2.2/fpp2/data/departures.rda  |binary
 fpp2-2.2/fpp2/data/elecdaily.rda   |only
 fpp2-2.2/fpp2/data/elecdemand.rda  |binary
 fpp2-2.2/fpp2/data/elecequip.rda   |binary
 fpp2-2.2/fpp2/data/elecsales.rda   |binary
 fpp2-2.2/fpp2/data/euretail.rda    |binary
 fpp2-2.2/fpp2/data/gasoline.rda    |binary
 fpp2-2.2/fpp2/data/goog.rda        |binary
 fpp2-2.2/fpp2/data/goog200.rda     |only
 fpp2-2.2/fpp2/data/guinearice.rda  |binary
 fpp2-2.2/fpp2/data/h02.rda         |binary
 fpp2-2.2/fpp2/data/hyndsight.rda   |binary
 fpp2-2.2/fpp2/data/insurance.rda   |binary
 fpp2-2.2/fpp2/data/livestock.rda   |binary
 fpp2-2.2/fpp2/data/marathon.rda    |binary
 fpp2-2.2/fpp2/data/maxtemp.rda     |binary
 fpp2-2.2/fpp2/data/melsyd.rda      |binary
 fpp2-2.2/fpp2/data/mens400.rda     |binary
 fpp2-2.2/fpp2/data/oil.rda         |binary
 fpp2-2.2/fpp2/data/prison.rda      |only
 fpp2-2.2/fpp2/data/prisonLF.rda    |only
 fpp2-2.2/fpp2/data/qauselec.rda    |binary
 fpp2-2.2/fpp2/data/qcement.rda     |binary
 fpp2-2.2/fpp2/data/qgas.rda        |binary
 fpp2-2.2/fpp2/data/sunspotarea.rda |binary
 fpp2-2.2/fpp2/data/uschange.rda    |binary
 fpp2-2.2/fpp2/data/usmelec.rda     |binary
 fpp2-2.2/fpp2/data/visnights.rda   |only
 fpp2-2.2/fpp2/data/wmurders.rda    |binary
 fpp2-2.2/fpp2/man/ausair.Rd        |    2 
 fpp2-2.2/fpp2/man/auscafe.Rd       |    2 
 fpp2-2.2/fpp2/man/elecdemand.Rd    |   12 +++-
 fpp2-2.2/fpp2/man/goog.Rd          |    6 +-
 fpp2-2.2/fpp2/man/h02.Rd           |    2 
 fpp2-2.2/fpp2/man/prison.Rd        |only
 fpp2-2.2/fpp2/man/sunspotarea.Rd   |    2 
 fpp2-2.2/fpp2/man/visnights.Rd     |only
 54 files changed, 127 insertions(+), 103 deletions(-)

More information about fpp2 at CRAN
Permanent link

Package FunChisq updated to version 2.4.5 with previous version 2.4.4 dated 2018-02-06

Title: Chi-Square and Exact Tests for Model-Free Functional Dependency
Description: Statistical hypothesis testing methods for model-free functional dependency using asymptotic chi-square or exact distributions. Functional chi-squares are asymmetric and functionally optimal, unique from other related statistics. Tests in this package reveal evidence for causality based on the causality-by-functionality principle. They include asymptotic functional chi-square tests, an exact functional test, a comparative functional chi-square test, and also a comparative chi-square test. The normalized non-constant functional chi-square test was used by Best Performer NMSUSongLab in HPN-DREAM (DREAM8) Breast Cancer Network Inference Challenges. For continuous data, these tests offer an advantage over regression analysis when a parametric functional form cannot be assumed; for categorical data, they provide a novel means to assess directional dependency not possible with symmetrical Pearson's chi-square or Fisher's exact tests.
Author: Yang Zhang [aut], Hua Zhong [aut], Ruby Sharma [aut], Sajal Kumar [aut], Joe Song [aut, cre]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>

Diff between FunChisq versions 2.4.4 dated 2018-02-06 and 2.4.5 dated 2018-02-20

 DESCRIPTION                    |    8 +++---
 MD5                            |   24 +++++++++---------
 NEWS                           |    7 +++++
 R/FunChisq.R                   |    7 +++--
 R/RcppExports.R                |    4 +--
 inst/CITATION                  |    6 ++--
 inst/doc/exact.fun.test.html   |    4 +--
 inst/doc/fun.chisq.test.html   |    4 +--
 man/FunChisq-package.Rd        |    6 +++-
 man/fun.chisq.test.Rd          |   12 ++++++---
 src/RcppExports.cpp            |    7 +++--
 src/main.cpp                   |   17 +++++++------
 tests/testthat/test_FunChisq.R |   52 ++++++++++++++++++++++++++---------------
 13 files changed, 96 insertions(+), 62 deletions(-)

More information about FunChisq at CRAN
Permanent link

Package sNPLS updated to version 0.3.31 with previous version 0.3.0 dated 2017-10-29

Title: NPLS Regression with L1 Penalization
Description: Tools for performing variable selection in three-way data using N-PLS in combination with L1 penalization. The N-PLS model (Rasmus Bro, 1996 <DOI:10.1002/(SICI)1099-128X(199601)10:1%3C47::AID-CEM400%3E3.0.CO;2-C>) is the natural extension of PLS (Partial Least Squares) to N-way structures, and tries to maximize the covariance between X and Y data arrays. The package also adds variable selection through L1 penalization.
Author: David Hervas
Maintainer: David Hervas <ddhervas@yahoo.es>

Diff between sNPLS versions 0.3.0 dated 2017-10-29 and 0.3.31 dated 2018-02-20

 DESCRIPTION         |    6 ++---
 MD5                 |   17 ++++++++-------
 NAMESPACE           |    1 
 R/sNPLS_fit.R       |   57 +++++++++++++++++++++++++++++++++++++---------------
 README.md           |    2 +
 man/cv_fit.Rd       |    4 ++-
 man/cv_snpls.Rd     |    5 +++-
 man/fitted.sNPLS.Rd |only
 man/repeat_cv.Rd    |    2 -
 man/sNPLS.Rd        |    9 ++++++++
 10 files changed, 73 insertions(+), 30 deletions(-)

More information about sNPLS at CRAN
Permanent link

Package highSCREEN updated to version 0.2 with previous version 0.1 dated 2016-05-03

Title: High-Throughput Screening for Plate Based Essays
Description: Can be used to carry out extraction, normalization, quality control (QC), candidate hits identification and visualization for plate based essays, in drug discovery. This project was funded by the Division of Allergy, Immunology, and Transplantation, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under contract No. HHSN272201400054C entitled "Adjuvant Discovery For Vaccines Against West Nile Virus and Influenza", awarded to Duke University and lead by Drs. Herman Staats and Soman Abraham.
Author: Ivo D. Shterev [aut, cre], Cliburn Chan [aut], Gregory D. Sempowski [aut]
Maintainer: Ivo D. Shterev <i.shterev@duke.edu>

Diff between highSCREEN versions 0.1 dated 2016-05-03 and 0.2 dated 2018-02-20

 DESCRIPTION                    |   12 -
 MD5                            |   53 ++--
 NEWS                           |only
 R/extractplate.R               |   40 +--
 R/formatRESULT.R               |   20 -
 R/hits.R                       |    8 
 R/normplate.R                  |   26 +-
 R/plotcont.R                   |    2 
 R/plotplate.R                  |    5 
 R/qcplate.R                    |   17 -
 R/rankhits.R                   |   30 +-
 R/zfactor.ssmd.R               |   40 +--
 build/partial.rdb              |binary
 build/vignette.rds             |binary
 inst/doc/highSCREENmanual.R    |  439 +++++++++++++++++++--------------------
 inst/doc/highSCREENmanual.Rnw  |  455 ++++++++++++++++++++---------------------
 inst/doc/highSCREENmanual.pdf  |binary
 man/extractplate.Rd            |   42 +--
 man/formatRESULT.Rd            |   88 +++----
 man/highSCREEN-package.Rd      |   14 -
 man/hits.Rd                    |   98 ++++----
 man/normplate.Rd               |   58 ++---
 man/plotcont.Rd                |   78 +++----
 man/plotplate.Rd               |   78 +++----
 man/qcplate.Rd                 |   70 +++---
 man/rankhits.Rd                |  106 ++++-----
 man/zfactor.ssmd.Rd            |   59 ++---
 vignettes/highSCREENmanual.Rnw |  455 ++++++++++++++++++++---------------------
 28 files changed, 1140 insertions(+), 1153 deletions(-)

More information about highSCREEN at CRAN
Permanent link

Package measuRing updated to version 0.5 with previous version 0.4.2 dated 2018-01-29

Title: Detection and Control of Tree-Ring Widths on Scanned Image Sections
Description: Identification of ring borders on scanned image sections from dendrochronological samples. Processing of image reflectances to produce gray matrices and time series of smoothed gray values. Luminance data is plotted on segmented images for users to perform both: visual identification of ring borders or control of automatic detection. Routines to visually include/exclude ring borders on the R graphical devices, or automatically detect ring borders using a linear detection algorithm. This algorithm detects ring borders according to positive/negative extreme values in the smoothed time-series of gray values. Most of the in-package routines can be recursively implemented using the multiDetect() function.
Author: Wilson Lara, Carlos Sierra, Felipe Bravo
Maintainer: Wilson Lara <wilarhen@gmail.com>

Diff between measuRing versions 0.4.2 dated 2018-01-29 and 0.5 dated 2018-02-20

 DESCRIPTION              |   12 +-
 MD5                      |   38 +++---
 NAMESPACE                |    2 
 NEWS                     |    9 +
 R/colNarrow.R            |    5 
 R/crossRings.R           |   36 +++---
 R/dataSegments.R         |    1 
 R/multiDetect.R          |   46 +++----
 R/plotSegments.R         |    6 -
 R/ringDetect.R           |  280 +++++++++++++++++++++++++++++++++--------------
 R/ringSelect.R           |  182 ++++++++++++++++--------------
 R/zzz.R                  |only
 build/partial.rdb        |binary
 inst/CITATION            |only
 man/colNarrow.Rd         |    5 
 man/crossRings.Rd        |   24 ++--
 man/measuRing-package.Rd |    2 
 man/multiDetect.Rd       |   36 ++----
 man/plotSegments.Rd      |    4 
 man/ringDetect.Rd        |  149 +++++++++++++++++++++----
 man/ringSelect.Rd        |   47 ++++---
 21 files changed, 568 insertions(+), 316 deletions(-)

More information about measuRing at CRAN
Permanent link

Package CircMLE updated to version 0.2.1 with previous version 0.2.0 dated 2017-06-29

Title: Maximum Likelihood Analysis of Circular Data
Description: A series of wrapper functions to implement the 10 maximum likelihood models of animal orientation described by Schnute and Groot (1992) <DOI:10.1016/S0003-3472(05)80068-5>. The functions also include the ability to use different optimizer methods and calculate various model selection metrics (i.e., AIC, AICc, BIC).
Author: Robert Fitak [aut, cre], Sönke Johnsen [aut]
Maintainer: Robert Fitak <rfitak9@gmail.com>

Diff between CircMLE versions 0.2.0 dated 2017-06-29 and 0.2.1 dated 2018-02-20

 DESCRIPTION      |    8 ++++----
 MD5              |    6 ++++--
 R/plot_circMLE.r |   10 +++++-----
 README.md        |only
 inst             |only
 5 files changed, 13 insertions(+), 11 deletions(-)

More information about CircMLE at CRAN
Permanent link

Package rtip updated to version 1.1.0 with previous version 1.0.0 dated 2016-06-02

Title: Inequality, Welfare and Poverty Indices and Curves using the EU-SILC Data
Description: R tools to measure and compare inequality, welfare and poverty using the EU statistics on income and living conditions surveys.
Author: Angel Berihuete [aut, cre], Carmen Dolores Ramos [aut], Miguel Angel Sordo [aut]
Maintainer: Angel Berihuete <angel.berihuete@uca.es>

Diff between rtip versions 1.0.0 dated 2016-06-02 and 1.1.0 dated 2018-02-20

 DESCRIPTION         |   10 +++---
 MD5                 |   86 ++++++++++++++++++++++++++--------------------------
 R/LCS2014-data.R    |    2 -
 R/OmegaGL.R         |   38 +++++++++++++---------
 R/OmegaTIP.R        |   33 +++++++++++++------
 R/arpr.R            |   42 ++++++++++++++++++-------
 R/arpt.R            |   37 ++++++++++++++--------
 R/gini.R            |   33 ++++++++++++++-----
 R/lc.R              |   66 +++++++++++++++++++++++++++------------
 R/loadEUSILC.R      |    4 +-
 R/loadLCS.R         |   29 ++++++++---------
 R/mih.R             |   30 ++++++++++++------
 R/mip.R             |   37 ++++++++++++++++------
 R/miuc.R            |   33 ++++++++++++++-----
 R/qsr.R             |   32 +++++++++++++------
 R/rmpg.R            |   42 +++++++++++++++++--------
 R/s1.R              |   55 +++++++++++++++++++++++----------
 R/s2.R              |   43 ++++++++++++++++++--------
 R/setupDataset.R    |   69 ++++++++++++++++++-----------------------
 R/testGL.R          |   32 ++++++++++++++-----
 R/testTIP.R         |   54 +++++++++++++++++++++++---------
 R/tip.R             |   79 +++++++++++++++++++++++++++++------------------
 README.md           |   20 +++++++++++-
 man/LCS2014.Rd      |    3 -
 man/OmegaGL.Rd      |   30 ++++++++++--------
 man/OmegaTIP.Rd     |   26 +++++++++------
 man/arpr.Rd         |   30 ++++++++++--------
 man/arpt.Rd         |   28 ++++++++++------
 man/eusilc2.Rd      |    1 
 man/gini.Rd         |   26 +++++++++------
 man/lc.Rd           |   24 +++++++++-----
 man/loadEUSILC.Rd   |    3 -
 man/loadLCS.Rd      |    9 ++---
 man/mih.Rd          |   24 +++++++++-----
 man/mip.Rd          |   29 ++++++++++++-----
 man/miuc.Rd         |   28 ++++++++++------
 man/qsr.Rd          |   26 +++++++++------
 man/rmpg.Rd         |   30 ++++++++++--------
 man/s1.Rd           |   36 ++++++++++++---------
 man/s2.Rd           |   32 +++++++++++--------
 man/setupDataset.Rd |   27 +++++++---------
 man/testGL.Rd       |   22 ++++++++-----
 man/testTIP.Rd      |   28 ++++++++++------
 man/tip.Rd          |   30 +++++++++++-------
 44 files changed, 882 insertions(+), 516 deletions(-)

More information about rtip at CRAN
Permanent link

Package rbacon updated to version 2.3.3 with previous version 2.3.2 dated 2018-02-04

Title: Age-Depth Modelling using Bayesian Statistics
Description: Bacon is an approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for deposits, through combining radiocarbon and other dates with prior information. See Blaauw & Christen (2011) <doi:10.1214/11-BA618>.
Author: Maarten Blaauw [aut, cre], J. Andres Christen [aut], Judith Esquivel Vazquez [ctb], Ted Belding [cph], James Theiler [cph], Brian Gough [cph], Charles Karney [cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>

Diff between rbacon versions 2.3.2 dated 2018-02-04 and 2.3.3 dated 2018-02-20

 DESCRIPTION          |    8 -
 MD5                  |   20 +-
 NAMESPACE            |    1 
 NEWS.md              |   10 +
 R/Bacon.R            |  396 +++++++++++++++++++++++++++++++++------------------
 man/Bacon.Age.d.Rd   |    5 
 man/Bacon.Rd         |    4 
 man/Baconvergence.Rd |    6 
 man/agedepth.Rd      |   26 +--
 man/calib.plot.Rd    |    5 
 man/rbacon.Rd        |    4 
 11 files changed, 311 insertions(+), 174 deletions(-)

More information about rbacon at CRAN
Permanent link

Package tsibble updated to version 0.1.3 with previous version 0.1.2 dated 2018-01-27

Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') to store and manage temporal-context data in a data-centric format, which is built on top of the 'tibble'. The 'tsibble' aims at manipulating and analysing temporal data in a tidy and modern manner, including easily interpolate missing values, aggregate over calendar periods, performing rolling window calculations, and etc.
Author: Earo Wang [aut, cre], Di Cook [aut, ths], Rob Hyndman [aut, ths]
Maintainer: Earo Wang <earo.wang@gmail.com>

Diff between tsibble versions 0.1.2 dated 2018-01-27 and 0.1.3 dated 2018-02-20

 DESCRIPTION                      |   11 +-
 MD5                              |   62 ++++++-------
 NAMESPACE                        |   22 +++-
 NEWS.md                          |   18 +++
 R/as-tsibble.R                   |   27 +++--
 R/dplyr-verbs.R                  |   32 ++++--
 R/format.R                       |    7 -
 R/parse-key.R                    |   17 +--
 R/subset.R                       |    7 +
 R/tidyr-verbs.R                  |    4 
 R/tsummarise.R                   |  147 +++++++++++++++++++++++++++-----
 R/type-sum.R                     |    3 
 R/window.R                       |  179 ++++++++++++++++++++++-----------------
 README.md                        |   34 +++----
 inst/doc/intro-tsibble.R         |   11 +-
 inst/doc/intro-tsibble.Rmd       |   13 +-
 inst/doc/intro-tsibble.html      |   40 ++++----
 man/col-verb.Rd                  |    6 +
 man/slide.Rd                     |   52 +++++++----
 man/stretch.Rd                   |   31 ++++--
 man/tile.Rd                      |   37 +++++---
 man/tsibble.Rd                   |    8 -
 man/tsummarise.Rd                |   76 +++++++++++++++-
 tests/testthat/test-dplyr.R      |   37 +++++---
 tests/testthat/test-fill-na.R    |    6 -
 tests/testthat/test-join.R       |    2 
 tests/testthat/test-subset.R     |    2 
 tests/testthat/test-tsibble-ts.R |    4 
 tests/testthat/test-tsibble.R    |   20 ++--
 tests/testthat/test-tsummarise.R |   64 +++++++++++++
 tests/testthat/test-window.R     |   24 ++---
 vignettes/intro-tsibble.Rmd      |   13 +-
 32 files changed, 699 insertions(+), 317 deletions(-)

More information about tsibble at CRAN
Permanent link

Package mlxR updated to version 3.3.0 with previous version 3.2.0 dated 2017-04-29

Title: Simulation of Longitudinal Data
Description: Simulation and visualization of complex models for longitudinal data. The models are encoded using the model coding language 'Mlxtran', automatically converted into C++ codes, compiled on the fly and linked to R using the 'Rcpp' package. That allows one to implement very easily complex ODE-based models and complex statistical models, including mixed effects models, for continuous, count, categorical, and time-to-event data.
Author: Marc Lavielle [aut, cre]
Maintainer: Marc Lavielle <Marc.Lavielle@inria.fr>

Diff between mlxR versions 3.2.0 dated 2017-04-29 and 3.3.0 dated 2018-02-20

 mlxR-3.2.0/mlxR/R/mlxDataReaderRLibraryBuilder.R |only
 mlxR-3.2.0/mlxR/R/mlxtoolboxReadData.R           |only
 mlxR-3.2.0/mlxR/R/patch303.R                     |only
 mlxR-3.2.0/mlxR/man/mlxtoolboxReadData.Rd        |only
 mlxR-3.3.0/mlxR/DESCRIPTION                      |   12 
 mlxR-3.3.0/mlxR/MD5                              |   51 
 mlxR-3.3.0/mlxR/NAMESPACE                        |    1 
 mlxR-3.3.0/mlxR/R/addFieldsFromHeader.R          |    2 
 mlxR-3.3.0/mlxR/R/convertmlx.R                   |   17 
 mlxR-3.3.0/mlxR/R/exposure.R                     |    6 
 mlxR-3.3.0/mlxR/R/hformat.R                      |  241 --
 mlxR-3.3.0/mlxR/R/initMlxLibrary.R               |  293 +--
 mlxR-3.3.0/mlxR/R/inlineModel.R                  |   48 
 mlxR-3.3.0/mlxR/R/kmplotmlx.R                    |  176 +-
 mlxR-3.3.0/mlxR/R/mlxComputeRLibraryBuilder.R    |  150 +
 mlxR-3.3.0/mlxR/R/mlxplore.R                     |    9 
 mlxR-3.3.0/mlxR/R/monolix2simulx.R               |  524 +++---
 mlxR-3.3.0/mlxR/R/prctilemlx.R                   |   10 
 mlxR-3.3.0/mlxR/R/processing_monolix.R           | 1964 +++++++++++------------
 mlxR-3.3.0/mlxR/R/readdatamlx.R                  | 1103 ++++++------
 mlxR-3.3.0/mlxR/R/shinymlx.R                     |   11 
 mlxR-3.3.0/mlxR/R/simulx.R                       |  471 ++---
 mlxR-3.3.0/mlxR/R/statmlx.R                      |    2 
 mlxR-3.3.0/mlxR/R/toolsmlx.R                     |   44 
 mlxR-3.3.0/mlxR/R/translateIOV.R                 |only
 mlxR-3.3.0/mlxR/R/writeDatamlx.R                 |    4 
 mlxR-3.3.0/mlxR/man/inlineModel.Rd               |   32 
 mlxR-3.3.0/mlxR/man/prctilemlx.Rd                |    4 
 mlxR-3.3.0/mlxR/man/simulx.Rd                    |    6 
 29 files changed, 2762 insertions(+), 2419 deletions(-)

More information about mlxR at CRAN
Permanent link

Package rlang updated to version 0.2.0 with previous version 0.1.6 dated 2017-12-21

Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation.
Author: Lionel Henry [aut, cre], Hadley Wickham [aut], RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>

Diff between rlang versions 0.1.6 dated 2017-12-21 and 0.2.0 dated 2018-02-20

 rlang-0.1.6/rlang/R/dictionary.R                       |only
 rlang-0.1.6/rlang/R/expr-lang.R                        |only
 rlang-0.1.6/rlang/R/expr-node.R                        |only
 rlang-0.1.6/rlang/R/expr-sym.R                         |only
 rlang-0.1.6/rlang/R/quo-unquote.R                      |only
 rlang-0.1.6/rlang/R/quos.R                             |only
 rlang-0.1.6/rlang/R/vector-chr.R                       |only
 rlang-0.1.6/rlang/R/vector-coercion.R                  |only
 rlang-0.1.6/rlang/R/vector-ctor.R                      |only
 rlang-0.1.6/rlang/R/vector-missing.R                   |only
 rlang-0.1.6/rlang/R/vector-raw.R                       |only
 rlang-0.1.6/rlang/R/vector-squash.R                    |only
 rlang-0.1.6/rlang/R/vector-utils.R                     |only
 rlang-0.1.6/rlang/build                                |only
 rlang-0.1.6/rlang/inst                                 |only
 rlang-0.1.6/rlang/man/dots_list.Rd                     |only
 rlang-0.1.6/rlang/man/expr.Rd                          |only
 rlang-0.1.6/rlang/man/is_quosure.Rd                    |only
 rlang-0.1.6/rlang/man/lang_args.Rd                     |only
 rlang-0.1.6/rlang/man/lang_fn.Rd                       |only
 rlang-0.1.6/rlang/man/lang_name.Rd                     |only
 rlang-0.1.6/rlang/man/lang_standardise.Rd              |only
 rlang-0.1.6/rlang/man/new_cnd.Rd                       |only
 rlang-0.1.6/rlang/man/pairlist.Rd                      |only
 rlang-0.1.6/rlang/man/quo-predicates.Rd                |only
 rlang-0.1.6/rlang/man/quosures.Rd                      |only
 rlang-0.1.6/rlang/man/vector-along.Rd                  |only
 rlang-0.1.6/rlang/man/vector-len.Rd                    |only
 rlang-0.1.6/rlang/src/attrs.c                          |only
 rlang-0.1.6/rlang/src/env.c                            |only
 rlang-0.1.6/rlang/src/eval.c                           |only
 rlang-0.1.6/rlang/src/export.h                         |only
 rlang-0.1.6/rlang/src/formula.c                        |only
 rlang-0.1.6/rlang/src/formula.h                        |only
 rlang-0.1.6/rlang/src/init.c                           |only
 rlang-0.1.6/rlang/src/lang.c                           |only
 rlang-0.1.6/rlang/src/pairlist.c                       |only
 rlang-0.1.6/rlang/src/replace-na.c                     |only
 rlang-0.1.6/rlang/src/sexp.c                           |only
 rlang-0.1.6/rlang/src/splice.c                         |only
 rlang-0.1.6/rlang/src/symbol.c                         |only
 rlang-0.1.6/rlang/src/unquote.c                        |only
 rlang-0.1.6/rlang/src/utils.c                          |only
 rlang-0.1.6/rlang/src/utils.h                          |only
 rlang-0.1.6/rlang/src/vector.h                         |only
 rlang-0.1.6/rlang/tests/testthat/test-lang-call.R      |only
 rlang-0.1.6/rlang/tests/testthat/test-lang-expr.R      |only
 rlang-0.1.6/rlang/tests/testthat/test-lang.R           |only
 rlang-0.1.6/rlang/tests/testthat/test-quo-enquo.R      |only
 rlang-0.1.6/rlang/tests/testthat/test-quosure.R        |only
 rlang-0.1.6/rlang/tests/testthat/test-tidy-capture.R   |only
 rlang-0.1.6/rlang/tests/testthat/test-tidy-eval.R      |only
 rlang-0.1.6/rlang/tests/testthat/test-tidy-unquote.R   |only
 rlang-0.1.6/rlang/tests/testthat/test-types-coercion.R |only
 rlang-0.1.6/rlang/tests/testthat/test-vector.R         |only
 rlang-0.1.6/rlang/vignettes                            |only
 rlang-0.2.0/rlang/DESCRIPTION                          |   15 
 rlang-0.2.0/rlang/MD5                                  |  467 ++++++----
 rlang-0.2.0/rlang/NAMESPACE                            |  106 ++
 rlang-0.2.0/rlang/NEWS.md                              |  398 +++++++++
 rlang-0.2.0/rlang/R/arg.R                              |  117 ++
 rlang-0.2.0/rlang/R/attr.R                             |   54 +
 rlang-0.2.0/rlang/R/c-api.R                            |only
 rlang-0.2.0/rlang/R/call.R                             |only
 rlang-0.2.0/rlang/R/cnd-handlers.R                     |    4 
 rlang-0.2.0/rlang/R/cnd-restarts.R                     |    4 
 rlang-0.2.0/rlang/R/cnd.R                              |  195 +++-
 rlang-0.2.0/rlang/R/compat-lazyeval.R                  |   30 
 rlang-0.2.0/rlang/R/compat-purrr.R                     |   27 
 rlang-0.2.0/rlang/R/deparse.R                          |only
 rlang-0.2.0/rlang/R/dots.R                             |  387 ++++----
 rlang-0.2.0/rlang/R/env.R                              |  291 +++++-
 rlang-0.2.0/rlang/R/eval-tidy.R                        |  583 ++++++-------
 rlang-0.2.0/rlang/R/eval.R                             |  117 +-
 rlang-0.2.0/rlang/R/events.R                           |only
 rlang-0.2.0/rlang/R/expr.R                             |  221 ++---
 rlang-0.2.0/rlang/R/fn.R                               |  173 +++-
 rlang-0.2.0/rlang/R/formula.R                          |   94 +-
 rlang-0.2.0/rlang/R/lifecycle-retired.R                |only
 rlang-0.2.0/rlang/R/lifecycle.R                        |only
 rlang-0.2.0/rlang/R/node.R                             |only
 rlang-0.2.0/rlang/R/operators.R                        |   64 -
 rlang-0.2.0/rlang/R/parse.R                            |   58 -
 rlang-0.2.0/rlang/R/quasiquotation.R                   |only
 rlang-0.2.0/rlang/R/quo.R                              |  734 ++++++++---------
 rlang-0.2.0/rlang/R/quotation.R                        |only
 rlang-0.2.0/rlang/R/rlang.R                            |    8 
 rlang-0.2.0/rlang/R/s3.R                               |only
 rlang-0.2.0/rlang/R/sexp.R                             |only
 rlang-0.2.0/rlang/R/stack.R                            |   91 +-
 rlang-0.2.0/rlang/R/state.R                            |only
 rlang-0.2.0/rlang/R/sym.R                              |only
 rlang-0.2.0/rlang/R/types.R                            |  130 ++-
 rlang-0.2.0/rlang/R/utils.R                            |  157 +++
 rlang-0.2.0/rlang/R/vec-bytes.R                        |only
 rlang-0.2.0/rlang/R/vec-chr.R                          |only
 rlang-0.2.0/rlang/R/vec-coerce.R                       |only
 rlang-0.2.0/rlang/R/vec-na.R                           |only
 rlang-0.2.0/rlang/R/vec-new.R                          |only
 rlang-0.2.0/rlang/R/vec-squash.R                       |only
 rlang-0.2.0/rlang/R/vec-utils.R                        |only
 rlang-0.2.0/rlang/R/vec.R                              |only
 rlang-0.2.0/rlang/README.md                            |   43 
 rlang-0.2.0/rlang/man/abort.Rd                         |    3 
 rlang-0.2.0/rlang/man/are_na.Rd                        |    2 
 rlang-0.2.0/rlang/man/as_bytes.Rd                      |    9 
 rlang-0.2.0/rlang/man/as_data_mask.Rd                  |only
 rlang-0.2.0/rlang/man/as_env.Rd                        |   37 
 rlang-0.2.0/rlang/man/as_environment.Rd                |only
 rlang-0.2.0/rlang/man/as_function.Rd                   |    2 
 rlang-0.2.0/rlang/man/as_overscope.Rd                  |  121 --
 rlang-0.2.0/rlang/man/as_pairlist.Rd                   |   13 
 rlang-0.2.0/rlang/man/as_quosure.Rd                    |   69 -
 rlang-0.2.0/rlang/man/as_utf8_character.Rd             |    8 
 rlang-0.2.0/rlang/man/box.Rd                           |only
 rlang-0.2.0/rlang/man/call2.Rd                         |only
 rlang-0.2.0/rlang/man/call_args.Rd                     |only
 rlang-0.2.0/rlang/man/call_fn.Rd                       |only
 rlang-0.2.0/rlang/man/call_modify.Rd                   |only
 rlang-0.2.0/rlang/man/call_name.Rd                     |only
 rlang-0.2.0/rlang/man/call_standardise.Rd              |only
 rlang-0.2.0/rlang/man/caller_env.Rd                    |   11 
 rlang-0.2.0/rlang/man/catch_cnd.Rd                     |only
 rlang-0.2.0/rlang/man/chr_unserialise_unicode.Rd       |only
 rlang-0.2.0/rlang/man/cnd.Rd                           |only
 rlang-0.2.0/rlang/man/cnd_signal.Rd                    |   34 
 rlang-0.2.0/rlang/man/deprecated-cnd.Rd                |only
 rlang-0.2.0/rlang/man/dictionary.Rd                    |   23 
 rlang-0.2.0/rlang/man/dots_definitions.Rd              |only
 rlang-0.2.0/rlang/man/dots_values.Rd                   |   12 
 rlang-0.2.0/rlang/man/duplicate.Rd                     |    7 
 rlang-0.2.0/rlang/man/env.Rd                           |   26 
 rlang-0.2.0/rlang/man/env_bind.Rd                      |   55 -
 rlang-0.2.0/rlang/man/env_bind_exprs.Rd                |only
 rlang-0.2.0/rlang/man/env_bury.Rd                      |   11 
 rlang-0.2.0/rlang/man/env_clone.Rd                     |    2 
 rlang-0.2.0/rlang/man/env_depth.Rd                     |    2 
 rlang-0.2.0/rlang/man/env_get.Rd                       |   11 
 rlang-0.2.0/rlang/man/env_has.Rd                       |    2 
 rlang-0.2.0/rlang/man/env_inherits.Rd                  |    2 
 rlang-0.2.0/rlang/man/env_names.Rd                     |    4 
 rlang-0.2.0/rlang/man/env_parent.Rd                    |    8 
 rlang-0.2.0/rlang/man/env_poke.Rd                      |only
 rlang-0.2.0/rlang/man/env_unbind.Rd                    |    2 
 rlang-0.2.0/rlang/man/eval_bare.Rd                     |   87 +-
 rlang-0.2.0/rlang/man/eval_tidy.Rd                     |  144 +--
 rlang-0.2.0/rlang/man/eval_tidy_.Rd                    |   42 
 rlang-0.2.0/rlang/man/expr_interp.Rd                   |    8 
 rlang-0.2.0/rlang/man/expr_print.Rd                    |only
 rlang-0.2.0/rlang/man/exprs_auto_name.Rd               |    6 
 rlang-0.2.0/rlang/man/figures                          |only
 rlang-0.2.0/rlang/man/flatten.Rd                       |    2 
 rlang-0.2.0/rlang/man/fn_body.Rd                       |only
 rlang-0.2.0/rlang/man/fn_fmls.Rd                       |   33 
 rlang-0.2.0/rlang/man/frame_position.Rd                |   10 
 rlang-0.2.0/rlang/man/friendly_type.Rd                 |    8 
 rlang-0.2.0/rlang/man/get_env.Rd                       |   17 
 rlang-0.2.0/rlang/man/inherits_any.Rd                  |only
 rlang-0.2.0/rlang/man/invoke.Rd                        |   13 
 rlang-0.2.0/rlang/man/is_call.Rd                       |only
 rlang-0.2.0/rlang/man/is_callable.Rd                   |   16 
 rlang-0.2.0/rlang/man/is_expr.Rd                       |  108 --
 rlang-0.2.0/rlang/man/is_expression.Rd                 |only
 rlang-0.2.0/rlang/man/is_formula.Rd                    |   21 
 rlang-0.2.0/rlang/man/is_integerish.Rd                 |    6 
 rlang-0.2.0/rlang/man/is_lang.Rd                       |   62 -
 rlang-0.2.0/rlang/man/is_namespace.Rd                  |only
 rlang-0.2.0/rlang/man/is_pairlist.Rd                   |   27 
 rlang-0.2.0/rlang/man/is_quosureish.Rd                 |only
 rlang-0.2.0/rlang/man/is_symbol.Rd                     |    6 
 rlang-0.2.0/rlang/man/lang.Rd                          |   82 -
 rlang-0.2.0/rlang/man/lang_head.Rd                     |   30 
 rlang-0.2.0/rlang/man/lang_modify.Rd                   |   73 -
 rlang-0.2.0/rlang/man/lifecycle.Rd                     |only
 rlang-0.2.0/rlang/man/missing.Rd                       |    4 
 rlang-0.2.0/rlang/man/missing_arg.Rd                   |  111 +-
 rlang-0.2.0/rlang/man/modify.Rd                        |   14 
 rlang-0.2.0/rlang/man/mut_node_car.Rd                  |only
 rlang-0.2.0/rlang/man/mut_utf8_locale.Rd               |   10 
 rlang-0.2.0/rlang/man/names2.Rd                        |    6 
 rlang-0.2.0/rlang/man/new-vector-along.Rd              |only
 rlang-0.2.0/rlang/man/new-vector.Rd                    |only
 rlang-0.2.0/rlang/man/new_call.Rd                      |only
 rlang-0.2.0/rlang/man/new_function.Rd                  |    2 
 rlang-0.2.0/rlang/man/new_node.Rd                      |only
 rlang-0.2.0/rlang/man/ns_env.Rd                        |    8 
 rlang-0.2.0/rlang/man/op-definition.Rd                 |   51 -
 rlang-0.2.0/rlang/man/overscope_eval_next.Rd           |only
 rlang-0.2.0/rlang/man/parse_expr.Rd                    |   55 -
 rlang-0.2.0/rlang/man/parse_quosure.Rd                 |only
 rlang-0.2.0/rlang/man/prepend.Rd                       |   10 
 rlang-0.2.0/rlang/man/quasiquotation.Rd                |  230 +++--
 rlang-0.2.0/rlang/man/quo_expr.Rd                      |   53 -
 rlang-0.2.0/rlang/man/quo_label.Rd                     |only
 rlang-0.2.0/rlang/man/quo_squash.Rd                    |only
 rlang-0.2.0/rlang/man/quosure.Rd                       |  261 ++----
 rlang-0.2.0/rlang/man/quotation.Rd                     |only
 rlang-0.2.0/rlang/man/restarting.Rd                    |    2 
 rlang-0.2.0/rlang/man/return_from.Rd                   |    8 
 rlang-0.2.0/rlang/man/rst_list.Rd                      |    2 
 rlang-0.2.0/rlang/man/scoped_bindings.Rd               |only
 rlang-0.2.0/rlang/man/scoped_env.Rd                    |    8 
 rlang-0.2.0/rlang/man/scoped_options.Rd                |only
 rlang-0.2.0/rlang/man/seq2.Rd                          |    2 
 rlang-0.2.0/rlang/man/set_attrs.Rd                     |   17 
 rlang-0.2.0/rlang/man/set_chr_encoding.Rd              |   10 
 rlang-0.2.0/rlang/man/set_expr.Rd                      |    6 
 rlang-0.2.0/rlang/man/set_names.Rd                     |   10 
 rlang-0.2.0/rlang/man/splice.Rd                        |  102 +-
 rlang-0.2.0/rlang/man/stack.Rd                         |   16 
 rlang-0.2.0/rlang/man/stack_trim.Rd                    |   10 
 rlang-0.2.0/rlang/man/string.Rd                        |    2 
 rlang-0.2.0/rlang/man/switch_lang.Rd                   |   16 
 rlang-0.2.0/rlang/man/switch_type.Rd                   |   10 
 rlang-0.2.0/rlang/man/sym.Rd                           |   10 
 rlang-0.2.0/rlang/man/tidy-dots.Rd                     |only
 rlang-0.2.0/rlang/man/tidyeval-data.Rd                 |   25 
 rlang-0.2.0/rlang/man/type-predicates.Rd               |    7 
 rlang-0.2.0/rlang/man/type_of.Rd                       |    7 
 rlang-0.2.0/rlang/man/vec_poke_n.Rd                    |only
 rlang-0.2.0/rlang/man/vector-coercion.Rd               |    4 
 rlang-0.2.0/rlang/man/vector-construction.Rd           |   60 -
 rlang-0.2.0/rlang/man/vector-old-ctors.Rd              |only
 rlang-0.2.0/rlang/man/with_env.Rd                      |   10 
 rlang-0.2.0/rlang/man/with_handlers.Rd                 |    2 
 rlang-0.2.0/rlang/man/with_restarts.Rd                 |    2 
 rlang-0.2.0/rlang/src/Makevars                         |only
 rlang-0.2.0/rlang/src/capture.c                        |  132 +--
 rlang-0.2.0/rlang/src/export                           |only
 rlang-0.2.0/rlang/src/export.c                         |   44 -
 rlang-0.2.0/rlang/src/internal                         |only
 rlang-0.2.0/rlang/src/internal.c                       |only
 rlang-0.2.0/rlang/src/lib                              |only
 rlang-0.2.0/rlang/src/lib.c                            |only
 rlang-0.2.0/rlang/tests/testthat/fixtures              |only
 rlang-0.2.0/rlang/tests/testthat/helper-capture.R      |   26 
 rlang-0.2.0/rlang/tests/testthat/helper-conditions.R   |only
 rlang-0.2.0/rlang/tests/testthat/helper-locale.R       |    6 
 rlang-0.2.0/rlang/tests/testthat/helper-print.R        |only
 rlang-0.2.0/rlang/tests/testthat/test-arg.R            |    6 
 rlang-0.2.0/rlang/tests/testthat/test-attr.R           |    7 
 rlang-0.2.0/rlang/tests/testthat/test-c-api.R          |only
 rlang-0.2.0/rlang/tests/testthat/test-call.R           |only
 rlang-0.2.0/rlang/tests/testthat/test-conditions.R     |   89 +-
 rlang-0.2.0/rlang/tests/testthat/test-deparse.R        |only
 rlang-0.2.0/rlang/tests/testthat/test-dictionary.R     |   16 
 rlang-0.2.0/rlang/tests/testthat/test-dots.R           |   87 +-
 rlang-0.2.0/rlang/tests/testthat/test-encoding.R       |    5 
 rlang-0.2.0/rlang/tests/testthat/test-env.R            |  160 +++
 rlang-0.2.0/rlang/tests/testthat/test-eval-tidy.R      |only
 rlang-0.2.0/rlang/tests/testthat/test-events.R         |only
 rlang-0.2.0/rlang/tests/testthat/test-expr.R           |only
 rlang-0.2.0/rlang/tests/testthat/test-fn.R             |  108 ++
 rlang-0.2.0/rlang/tests/testthat/test-formula.R        |   42 
 rlang-0.2.0/rlang/tests/testthat/test-node.R           |only
 rlang-0.2.0/rlang/tests/testthat/test-operators.R      |   10 
 rlang-0.2.0/rlang/tests/testthat/test-parse.R          |   20 
 rlang-0.2.0/rlang/tests/testthat/test-quasiquotation.R |only
 rlang-0.2.0/rlang/tests/testthat/test-quo.R            |only
 rlang-0.2.0/rlang/tests/testthat/test-quotation.R      |only
 rlang-0.2.0/rlang/tests/testthat/test-retired.R        |only
 rlang-0.2.0/rlang/tests/testthat/test-s3.R             |only
 rlang-0.2.0/rlang/tests/testthat/test-sexp.R           |only
 rlang-0.2.0/rlang/tests/testthat/test-stack.R          |    2 
 rlang-0.2.0/rlang/tests/testthat/test-state.R          |only
 rlang-0.2.0/rlang/tests/testthat/test-sym.R            |only
 rlang-0.2.0/rlang/tests/testthat/test-types.R          |   66 +
 rlang-0.2.0/rlang/tests/testthat/test-utils.R          |   10 
 rlang-0.2.0/rlang/tests/testthat/test-vec-coerce.R     |only
 rlang-0.2.0/rlang/tests/testthat/test-vec-new.R        |only
 rlang-0.2.0/rlang/tests/testthat/test-vec-squash.R     |only
 rlang-0.2.0/rlang/tests/testthat/test-vec-utils.R      |only
 rlang-0.2.0/rlang/tests/testthat/test-vec.R            |only
 273 files changed, 4833 insertions(+), 3011 deletions(-)

More information about rlang at CRAN
Permanent link

Package knitr updated to version 1.20 with previous version 1.19 dated 2018-01-29

Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Ben Baumer [ctb], Brian Diggs [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Donald Arseneau [ctb, cph] (the framed package at inst/misc/framed.sty), Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb]
Maintainer: Yihui Xie <xie@yihui.name>

Diff between knitr versions 1.19 dated 2018-01-29 and 1.20 dated 2018-02-20

 DESCRIPTION                  |   15 ++++++---
 MD5                          |   24 +++++++-------
 R/parser.R                   |   36 +++++++++++++++-------
 R/pattern.R                  |    1 
 R/table.R                    |    9 ++++-
 R/utils-vignettes.R          |    2 -
 R/utils.R                    |   69 +++++++++++++++----------------------------
 inst/doc/knit_expand.html    |    4 +-
 inst/doc/knit_print.html     |    4 +-
 inst/doc/knitr-intro.html    |   10 +++---
 inst/doc/knitr-markdown.html |    2 -
 inst/doc/knitr-refcard.pdf   |binary
 man/read_chunk.Rd            |   13 +++++---
 13 files changed, 101 insertions(+), 88 deletions(-)

More information about knitr at CRAN
Permanent link

Package TP.idm updated to version 1.3 with previous version 1.2 dated 2016-12-01

Title: Estimation of Transition Probabilities for the Illness-Death Model
Description: Estimation of transition probabilities for the illness-death model. Both the Aalen-Johansen estimator for a Markov model and a novel non-Markovian estimator by de Una-Alvarez and Meira-Machado (2015) <doi:10.1111/biom.12288>, see also Balboa and de Una-Alvarez (2018) <doi:10.18637/jss.v083.i10>, are included.
Author: Vanesa Balboa-Barreiro, Jacobo de Una-Alvarez <jacobo@uvigo.es> and Luis Meira-Machado <lmachado@math.uminho.pt>
Maintainer: Vanesa Balboa-Barreiro <vanesa.balboa@uvigo.es>

Diff between TP.idm versions 1.2 dated 2016-12-01 and 1.3 dated 2018-02-20

 DESCRIPTION            |   10 -
 MD5                    |   37 +++--
 NAMESPACE              |    2 
 R/TP.idm-internal.R    |only
 R/TPidm.R              |  204 +++++++++++++++----------------
 R/ci.AJ.R              |  192 ++++++++++++++---------------
 R/fun.AJ.R             |  176 +++++++++++++-------------
 R/plot.TPidm.R         |  182 +++++++++++++--------------
 R/prep.data.AJ.R       |  320 ++++++++++++++++++++++++-------------------------
 R/prep.data.event.AJ.R |   46 +++----
 R/print.TPidm.R        |  108 ++++++++--------
 R/test.nm.R            |   76 +++++------
 R/var.AJ.R             |  146 +++++++++++-----------
 R/var.NM.R             |   12 -
 build/partial.rdb      |binary
 data/colonTP.rda       |binary
 inst                   |only
 man/TP.idm-package.Rd  |    2 
 man/TPidm.Rd           |    4 
 man/colonTP.Rd         |    4 
 src/init.c             |only
 21 files changed, 764 insertions(+), 757 deletions(-)

More information about TP.idm at CRAN
Permanent link

Package alfred updated to version 0.1.5 with previous version 0.1.4 dated 2017-10-08

Title: Downloading Time Series from ALFRED Database for Various Vintages
Description: Provides direct access to the ALFRED (<https://alfred.stlouisfed.org>) and FRED (<https://fred.stlouisfed.org>) databases. Its functions return tidy data frames for different releases of the specified time series. Note that this product uses the FRED© API but is not endorsed or certified by the Federal Reserve Bank of St. Louis.
Author: Onno Kleen [aut, cre]
Maintainer: Onno Kleen <r@onnokleen.de>

Diff between alfred versions 0.1.4 dated 2017-10-08 and 0.1.5 dated 2018-02-20

 DESCRIPTION              |    6 
 MD5                      |   18 
 NEWS.md                  |    1 
 R/get_alfred_series.R    |    1 
 build/vignette.rds       |binary
 inst/doc/alfred.R        |    4 
 inst/doc/alfred.Rmd      |    4 
 inst/doc/alfred.html     | 1607 ++++++++---------------------------------------
 man/get_alfred_series.Rd |    1 
 vignettes/alfred.Rmd     |    4 
 10 files changed, 313 insertions(+), 1333 deletions(-)

More information about alfred at CRAN
Permanent link

Package metaplot updated to version 0.4.4 with previous version 0.4.1 dated 2018-02-03

Title: Data-Driven Diagnostic Plots
Description: Designs plots in terms of core structure. See 'example(metaplot)'. Primary arguments are (unquoted) column names; order and type (numeric or not) dictate the resulting plot. Specify any y variables, x variable, any groups variable, and any conditioning variables to metaplot() to generate density plots, boxplots, mosaic plots, scatterplots, scatterplot matrices, or conditioned plots. Use multiplot() to arrange plots in grids. Wherever present, scalar column attributes 'label' and 'guide' are honored, producing fully annotated plots with minimal effort. Attribute 'guide' is typically units, but may be encoded() to provide interpretations of categorical values (see '?encode'). Utility unpack() transforms scalar column attributes to row values and pack() does the reverse, supporting tool-neutral storage of metadata along with primary data. The package supports customizable aesthetics such as such as reference lines, unity lines, smooths, log transformation, and linear fits. Compact syntax and integrated metadata promote workflow scalability.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>

Diff between metaplot versions 0.4.1 dated 2018-02-03 and 0.4.4 dated 2018-02-20

 DESCRIPTION                       |   14 
 MD5                               |   60 ++-
 NAMESPACE                         |    8 
 R/box.R                           |    4 
 R/categorical.R                   |  593 ++++++++++++++++++++++++++++++++++++--
 R/metaplot.R                      |  107 +++---
 R/pack.R                          |   11 
 R/scatter.R                       |   24 -
 inst/extdata/theoph.csv           |  274 ++++++++---------
 man/boxplot_data_frame.Rd         |    7 
 man/boxplot_panel.Rd              |    5 
 man/categorical.Rd                |    4 
 man/categorical.data.frame.Rd     |   11 
 man/categorical_data_frame.Rd     |only
 man/categorical_panel.Rd          |only
 man/corsplom_data_frame.Rd        |    1 
 man/corsplom_panel_correlation.Rd |    3 
 man/corsplom_panel_diagonal.Rd    |    3 
 man/corsplom_panel_scatter.Rd     |    3 
 man/dens_panel.Rd                 |    2 
 man/densplot_data_frame.Rd        |    1 
 man/diag_label.Rd                 |    2 
 man/diag_pin.Rd                   |    2 
 man/iso_prepanel.Rd               |    2 
 man/metaplot.Rd                   |   43 +-
 man/metaplot.data.frame.Rd        |   65 ++--
 man/metaplot_ref.Rd               |    2 
 man/pack.data.frame.Rd            |    2 
 man/panel_tile.Rd                 |only
 man/scatter_data_frame.Rd         |    7 
 man/scatter_panel.Rd              |    3 
 man/scatter_panel_ref.Rd          |    4 
 man/tilestats.Rd                  |only
 33 files changed, 948 insertions(+), 319 deletions(-)

More information about metaplot at CRAN
Permanent link

Package InterVA4 updated to version 1.7.5 with previous version 1.7.4 dated 2017-05-26

Title: Replicate and Analyse 'InterVA4'
Description: Provides an R version of the 'InterVA4' software (<http://www.interva.net>) for coding cause of death from verbal autopsies. It also provides simple graphical representation of individual and population level statistics.
Author: Zehang Li, Tyler McCormick, Sam Clark, Peter Byass
Maintainer: Zehang Li <lizehang@uw.edu>

Diff between InterVA4 versions 1.7.4 dated 2017-05-26 and 1.7.5 dated 2018-02-20

 DESCRIPTION      |    8 ++++----
 MD5              |    6 +++---
 R/InterVA.plot.R |    6 +++++-
 inst/NEWS.Rd     |    5 +++++
 4 files changed, 17 insertions(+), 8 deletions(-)

More information about InterVA4 at CRAN
Permanent link

Package CVXR updated to version 0.95 with previous version 0.94-4 dated 2017-11-20

Title: Disciplined Convex Optimization
Description: An object-oriented modeling language for disciplined convex programming (DCP). It allows the user to formulate convex optimization problems in a natural way following mathematical convention and DCP rules. The system analyzes the problem, verifies its convexity, converts it into a canonical form, and hands it off to an appropriate solver to obtain the solution.
Author: Anqi Fu [aut, cre], Balasubramanian Narasimhan [aut], Steven Diamond [aut], John Miller [aut], Stephen Boyd [ctb], Paul Kunsberg Rosenfield [ctb]
Maintainer: Anqi Fu <anqif@stanford.edu>

Diff between CVXR versions 0.94-4 dated 2017-11-20 and 0.95 dated 2018-02-20

 DESCRIPTION                          |    8 
 MD5                                  |   22 -
 NAMESPACE                            |    1 
 R/generics.R                         |   59 +++
 R/problem.R                          |   37 +
 R/solver.R                           |    7 
 README.md                            |    4 
 build/vignette.rds                   |binary
 inst/doc/cvxr_intro.html             |  659 ++++++++++++++++++++++-------------
 man/Problem-class.Rd                 |    9 
 man/unpack_results.Rd                |only
 tests/manual/test_vignette.R         |   50 ++
 tests/testthat/test_unpack_results.R |only
 13 files changed, 588 insertions(+), 268 deletions(-)

More information about CVXR at CRAN
Permanent link

Mon, 19 Feb 2018

Package knitrProgressBar updated to version 1.1.0 with previous version 1.0.0 dated 2018-02-09

Title: Provides Progress Bars in 'knitr'
Description: Provides a progress bar similar to 'dplyr' that can write progress out to a variety of locations, including stdout(), stderr(), or from file(). Useful when using 'knitr' or 'rmarkdown', and you still want to see progress of calculations in the terminal.
Author: Robert M Flight [aut, cre], Hadley Wickham [ctb] (Author of included dplyr fragments), Romain Francois [ctb] (Author of included dplyr fragments), Lionel Henry [ctb] (Author of included dplyr fragments), Kirill Müller [ctb] (Author of included dplyr fragments), RStudio [cph] (Copyright holder of included dplyr fragments)
Maintainer: Robert M Flight <rflight79@gmail.com>

Diff between knitrProgressBar versions 1.0.0 dated 2018-02-09 and 1.1.0 dated 2018-02-19

 DESCRIPTION                         |    9 
 MD5                                 |   22 +-
 NAMESPACE                           |    2 
 NEWS.md                             |    5 
 R/progress_mp.R                     |only
 README.md                           |    4 
 build/vignette.rds                  |binary
 inst/doc/example_progress_bars.html |  388 ++++++++++++++++++++++++------------
 inst/doc/multiprocessing.R          |only
 inst/doc/multiprocessing.Rmd        |only
 inst/doc/multiprocessing.html       |only
 man/set_progress_mp.Rd              |only
 man/watch_progress_mp.Rd            |only
 tests/testthat/test-kpb.R           |    2 
 tests/testthat/test-multiprocess.R  |only
 vignettes/multiprocessing.Rmd       |only
 16 files changed, 298 insertions(+), 134 deletions(-)

More information about knitrProgressBar at CRAN
Permanent link

Package PlackettLuce updated to version 0.2-2 with previous version 0.2-1 dated 2017-12-07

Title: Plackett-Luce Models for Rankings
Description: Functions to prepare rankings data and fit the Plackett-Luce model jointly attributed to Plackett (1975) <doi:10.2307/2346567> and Luce (1959, ISBN:0486441369). The standard Plackett-Luce model is generalized to accommodate ties of any order in the ranking. Partial rankings, in which only a subset of items are ranked in each ranking, are also accommodated in the implementation. Disconnected/weakly connected networks implied by the rankings are handled by adding pseudo-rankings with a hypothetical item. Methods are provided to estimate standard errors or quasi-standard errors for inference as well as to fit Plackett-Luce trees. See the package website or vignette for full details.
Author: Heather Turner [aut, cre], Ioannis Kosmidis [aut], David Firth [aut], Jacob van Etten [ctb]
Maintainer: Heather Turner <ht@heatherturner.net>

Diff between PlackettLuce versions 0.2-1 dated 2017-12-07 and 0.2-2 dated 2018-02-19

 DESCRIPTION                          |    6 
 MD5                                  |   58 -
 NAMESPACE                            |   13 
 NEWS.md                              |   15 
 R/PlackettLuce.R                     |   70 -
 R/choices.R                          |    3 
 R/coef.R                             |   18 
 R/fitted.R                           |    9 
 R/itempar.R                          |    2 
 R/plfit.R                            |    2 
 R/pltree.R                           |   93 +
 R/simulate.R                         |only
 R/utility.R                          |   34 
 README.md                            |   11 
 inst/PlackettLuce0/fitted0.R         |    3 
 inst/WORDLIST                        |    7 
 inst/doc/Overview.R                  |   54 -
 inst/doc/Overview.Rmd                | 1837 +++++++++++++++++------------------
 inst/doc/Overview.html               |  508 ++-------
 man/PlackettLuce.Rd                  |    8 
 man/figures/always-loses-1.png       |binary
 man/figures/qv-1.png                 |binary
 man/fitted.PlackettLuce.Rd           |   14 
 man/plfit.Rd                         |    2 
 man/pltree.Rd                        |   15 
 man/simulate.PlackettLuce.Rd         |only
 tests/testthat/test-log-likelihood.R |    1 
 tests/testthat/test-pseudo.R         |    9 
 tests/testthat/test-psycho.R         |   57 +
 tests/testthat/test-simulate.R       |only
 tests/testthat/test-start.R          |only
 vignettes/Overview.Rmd               | 1837 +++++++++++++++++------------------
 32 files changed, 2399 insertions(+), 2287 deletions(-)

More information about PlackettLuce at CRAN
Permanent link

Package xaringan updated to version 0.6 with previous version 0.5 dated 2018-01-29

Title: Presentation Ninja
Description: Create HTML5 slides with R Markdown and the JavaScript library 'remark.js' (<https://remarkjs.com>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Claus Thorn Ekstrøm [ctb], Dawei Lang [ctb], Garrick Aden-Buie [ctb], Ole Petter Bang [ctb] (CSS in rmarkdown/templates/xaringan/resources/default.css), Patrick Schratz [ctb], Sean Lopp [ctb]
Maintainer: Yihui Xie <xie@yihui.name>

Diff between xaringan versions 0.5 dated 2018-01-29 and 0.6 dated 2018-02-19

 DESCRIPTION                                           |    9 ++++++---
 MD5                                                   |    6 ++++--
 R/render.R                                            |    2 +-
 inst/examples                                         |only
 inst/rmarkdown/templates/xaringan/resources/hygge.css |only
 5 files changed, 11 insertions(+), 6 deletions(-)

More information about xaringan at CRAN
Permanent link

Package rgdax updated to version 0.4.0 with previous version 0.3.0 dated 2018-02-18

Title: Wrapper for 'GDAX' Cryptocurrency Exchange
Description: Allow access to both public and private end points to 'GDAX' cryptocurrency exchange. For authenticated flow, users must have valid api, secret and passphrase to be able to connect. Read more details on getting access to 'GDAX' API at: <https://support.gdax.com/customer/en/portal/articles/2425383-how-can-i-create-an-api-key-for-gdax->.
Author: person("Dheeraj", "Agarwal", email = "dheeeraj.agarwal@gmail.com", role = c("aut", "cre"))
Maintainer: Dheeraj Agarwal <dheeeraj.agarwal@gmail.com>

Diff between rgdax versions 0.3.0 dated 2018-02-18 and 0.4.0 dated 2018-02-19

 DESCRIPTION             |    6 +--
 MD5                     |   78 ++++++++++++++++++++++++------------------------
 NEWS.md                 |    6 +++
 R/account.R             |    2 -
 R/account_hist.R        |    2 -
 R/accounts.R            |    2 -
 R/add_order.R           |    2 -
 R/auth.R                |    2 -
 R/cancel_order.R        |    6 +--
 R/fills.R               |    2 -
 R/holds.R               |    2 -
 R/parse_response.R      |    2 -
 R/profile.R             |    2 -
 R/public_candles.R      |    4 +-
 R/public_daystats.R     |    2 -
 R/public_info.R         |    2 -
 R/public_orderbook.R    |    7 ----
 R/public_ticker.R       |    4 +-
 R/public_time.R         |    2 -
 R/public_trades.R       |    4 +-
 R/pymt_methods.R        |    2 -
 README.md               |    2 -
 man/account.Rd          |    2 -
 man/account_hist.Rd     |    2 -
 man/accounts.Rd         |    2 -
 man/add_order.Rd        |    2 -
 man/auth.Rd             |    2 -
 man/cancel_order.Rd     |    6 +--
 man/fills.Rd            |    2 -
 man/holds.Rd            |    2 -
 man/parse_response.Rd   |    2 -
 man/profile.Rd          |    2 -
 man/public_candles.Rd   |    4 +-
 man/public_daystats.Rd  |    2 -
 man/public_info.Rd      |    2 -
 man/public_orderbook.Rd |    2 -
 man/public_ticker.Rd    |    4 +-
 man/public_time.Rd      |    2 -
 man/public_trades.Rd    |    4 +-
 man/pymt_methods.Rd     |    2 -
 40 files changed, 95 insertions(+), 94 deletions(-)

More information about rgdax at CRAN
Permanent link

Package MSCMT updated to version 1.3.2 with previous version 1.3.1 dated 2018-01-04

Title: Multivariate Synthetic Control Method Using Time Series
Description: Three generalizations of the synthetic control method (which has already an implementation in package 'Synth') are implemented: first, 'MSCMT' allows for using multiple outcome variables, second, time series can be supplied as economic predictors, and third, a well-defined cross-validation approach can be used. Much effort has been taken to make the implementation as stable as possible (including edge cases) without losing computational efficiency. A detailed description of the main algorithms is given in Becker and Klößner (2018) <doi:10.1016/j.ecosta.2017.08.002>.
Author: Martin Becker [aut, cre] (<https://orcid.org/0000-0003-2336-9751>), Stefan Klößner [aut], Karline Soetaert [com], LAPACK authors [cph]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>

Diff between MSCMT versions 1.3.1 dated 2018-01-04 and 1.3.2 dated 2018-02-19

 DESCRIPTION                    |    8 ++++----
 MD5                            |   16 ++++++++--------
 NEWS                           |   13 +++++++++++++
 R/mscmt.r                      |   21 +++++++++++++++++++--
 R/prepare.r                    |   14 +++++++++-----
 build/partial.rdb              |binary
 build/vignette.rds             |binary
 inst/doc/WorkingWithMSCMT.html |   24 ++++++++++++------------
 man/MSCMTfunction.Rd           |    3 +++
 9 files changed, 68 insertions(+), 31 deletions(-)

More information about MSCMT at CRAN
Permanent link

Package tidytext updated to version 0.1.7 with previous version 0.1.6 dated 2018-01-07

Title: Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools
Description: Text mining for word processing and sentiment analysis using 'dplyr', 'ggplot2', and other tidy tools.
Author: Gabriela De Queiroz [ctb], Oliver Keyes [ctb], David Robinson [aut], Julia Silge [aut, cre]
Maintainer: Julia Silge <julia.silge@gmail.com>

Diff between tidytext versions 0.1.6 dated 2018-01-07 and 0.1.7 dated 2018-02-19

 DESCRIPTION                          |    6 +-
 MD5                                  |   26 +++++-----
 NEWS.md                              |    4 +
 R/parts_of_speech.R                  |    4 +
 README.md                            |    9 ++-
 inst/doc/tf_idf.html                 |   14 ++---
 inst/doc/tidying_casting.html        |   84 +++++++++++++++++------------------
 inst/doc/tidytext.html               |   22 ++++-----
 inst/doc/topic_modeling.html         |   12 ++---
 man/parts_of_speech.Rd               |    5 ++
 tests/testthat/test-sparse-casters.R |    2 
 tests/testthat/test-stm-tidiers.R    |    1 
 tools/README-unnamed-chunk-13-1.png  |binary
 tools/README-unnamed-chunk-9-1.png   |binary
 14 files changed, 102 insertions(+), 87 deletions(-)

More information about tidytext at CRAN
Permanent link

Package tidyquant updated to version 0.5.4 with previous version 0.5.3 dated 2017-08-03

Title: Tidy Quantitative Financial Analysis
Description: Bringing financial analysis to the 'tidyverse'. The 'tidyquant' package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR' and 'PerformanceAnalytics' package functions and returns the objects in the tidy 'tibble' format. The main advantage is being able to use quantitative functions with the 'tidyverse' functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See the 'tidyquant' website for more information, documentation and examples.
Author: Matt Dancho [aut, cre], Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>

Diff between tidyquant versions 0.5.3 dated 2017-08-03 and 0.5.4 dated 2018-02-19

 tidyquant-0.5.3/tidyquant/R/as_tibble.R                                          |only
 tidyquant-0.5.3/tidyquant/R/as_xts.R                                             |only
 tidyquant-0.5.3/tidyquant/man/as_tibble.Rd                                       |only
 tidyquant-0.5.3/tidyquant/man/as_xts.Rd                                          |only
 tidyquant-0.5.3/tidyquant/tests/testthat/test_as_tibble.R                        |only
 tidyquant-0.5.3/tidyquant/tests/testthat/test_as_xts.R                           |only
 tidyquant-0.5.4/tidyquant/DESCRIPTION                                            |   27 
 tidyquant-0.5.4/tidyquant/LICENSE                                                |    4 
 tidyquant-0.5.4/tidyquant/MD5                                                    |  174 
 tidyquant-0.5.4/tidyquant/NAMESPACE                                              |  175 
 tidyquant-0.5.4/tidyquant/NEWS.md                                                |  222 -
 tidyquant-0.5.4/tidyquant/R/alphavantager.R                                      |only
 tidyquant-0.5.4/tidyquant/R/coord_date.R                                         |  156 
 tidyquant-0.5.4/tidyquant/R/data.R                                               |   38 
 tidyquant-0.5.4/tidyquant/R/deprecated.R                                         |   74 
 tidyquant-0.5.4/tidyquant/R/geom_bbands.R                                        |  658 +--
 tidyquant-0.5.4/tidyquant/R/geom_chart.R                                         |  466 +-
 tidyquant-0.5.4/tidyquant/R/geom_ma.R                                            |  488 +-
 tidyquant-0.5.4/tidyquant/R/global_vars.R                                        |  258 -
 tidyquant-0.5.4/tidyquant/R/quandl.R                                             |  124 
 tidyquant-0.5.4/tidyquant/R/scale_manual.R                                       |  292 -
 tidyquant-0.5.4/tidyquant/R/theme_tq.R                                           |  286 -
 tidyquant-0.5.4/tidyquant/R/tidyquant.R                                          |   88 
 tidyquant-0.5.4/tidyquant/R/tq_get.R                                             | 1959 ++++-----
 tidyquant-0.5.4/tidyquant/R/tq_mutate.R                                          |  814 +--
 tidyquant-0.5.4/tidyquant/R/tq_performance.R                                     |  632 +--
 tidyquant-0.5.4/tidyquant/R/tq_portfolio.R                                       |  888 ++--
 tidyquant-0.5.4/tidyquant/R/tq_stock_list.R                                      |  668 +--
 tidyquant-0.5.4/tidyquant/R/tq_transmute.R                                       |  786 +--
 tidyquant-0.5.4/tidyquant/R/utils-dates.R                                        |   58 
 tidyquant-0.5.4/tidyquant/R/utils-formatting.R                                   |   98 
 tidyquant-0.5.4/tidyquant/README.md                                              |  173 
 tidyquant-0.5.4/tidyquant/build/vignette.rds                                     |binary
 tidyquant-0.5.4/tidyquant/inst/doc/TQ00-introduction-to-tidyquant.R              |   60 
 tidyquant-0.5.4/tidyquant/inst/doc/TQ00-introduction-to-tidyquant.Rmd            |  246 -
 tidyquant-0.5.4/tidyquant/inst/doc/TQ00-introduction-to-tidyquant.html           |  270 -
 tidyquant-0.5.4/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.R            |  400 -
 tidyquant-0.5.4/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.Rmd          |  962 ++--
 tidyquant-0.5.4/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.html         | 1417 +++---
 tidyquant-0.5.4/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.R        |  602 +-
 tidyquant-0.5.4/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.Rmd      | 1106 ++---
 tidyquant-0.5.4/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.html     | 1544 +++----
 tidyquant-0.5.4/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.R    |  280 -
 tidyquant-0.5.4/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.Rmd  |  652 +--
 tidyquant-0.5.4/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.html |  980 ++--
 tidyquant-0.5.4/tidyquant/inst/doc/TQ04-charting-with-tidyquant.R                |  558 +-
 tidyquant-0.5.4/tidyquant/inst/doc/TQ04-charting-with-tidyquant.Rmd              |  960 ++--
 tidyquant-0.5.4/tidyquant/inst/doc/TQ04-charting-with-tidyquant.html             |  992 ++--
 tidyquant-0.5.4/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.R    |  700 +--
 tidyquant-0.5.4/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.Rmd  | 1388 +++---
 tidyquant-0.5.4/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.html | 2104 ++++------
 tidyquant-0.5.4/tidyquant/man/FANG.Rd                                            |   58 
 tidyquant-0.5.4/tidyquant/man/av_api_key.Rd                                      |only
 tidyquant-0.5.4/tidyquant/man/coord_x_date.Rd                                    |  136 
 tidyquant-0.5.4/tidyquant/man/deprecated.Rd                                      |   86 
 tidyquant-0.5.4/tidyquant/man/geom_bbands.Rd                                     |  342 -
 tidyquant-0.5.4/tidyquant/man/geom_chart.Rd                                      |  248 -
 tidyquant-0.5.4/tidyquant/man/geom_ma.Rd                                         |  290 -
 tidyquant-0.5.4/tidyquant/man/palette_tq.Rd                                      |   46 
 tidyquant-0.5.4/tidyquant/man/quandl_api_key.Rd                                  |   60 
 tidyquant-0.5.4/tidyquant/man/quandl_search.Rd                                   |   72 
 tidyquant-0.5.4/tidyquant/man/scale_manual.Rd                                    |  117 
 tidyquant-0.5.4/tidyquant/man/theme_tq.Rd                                        |   98 
 tidyquant-0.5.4/tidyquant/man/tidyquant.Rd                                       |   66 
 tidyquant-0.5.4/tidyquant/man/tq_get.Rd                                          |  263 -
 tidyquant-0.5.4/tidyquant/man/tq_mutate.Rd                                       |  314 -
 tidyquant-0.5.4/tidyquant/man/tq_performance.Rd                                  |  206 
 tidyquant-0.5.4/tidyquant/man/tq_portfolio.Rd                                    |  276 -
 tidyquant-0.5.4/tidyquant/man/tq_stock_list.Rd                                   |  142 
 tidyquant-0.5.4/tidyquant/tests/testthat.R                                       |    8 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_exchange.R                      |   68 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_get_compound_getters.R          |  152 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_get_dividends.R                 |   56 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_get_economic_data.R             |   72 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_get_exchange_rates.R            |   50 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_get_financials.R                |   68 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_get_key_ratios.R                |   68 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_get_key_stats.R                 |   62 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_get_metal_prices.R              |   70 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_get_splits.R                    |   56 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_get_stock_prices.R              |   90 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_index.R                         |   98 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_mutate.R                        |  395 -
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_performance.R                   |  114 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_portfolio.R                     |  152 
 tidyquant-0.5.4/tidyquant/tests/testthat/test_tq_transmute.R                     |  353 -
 tidyquant-0.5.4/tidyquant/vignettes/TQ00-introduction-to-tidyquant.Rmd           |  246 -
 tidyquant-0.5.4/tidyquant/vignettes/TQ01-core-functions-in-tidyquant.Rmd         |  962 ++--
 tidyquant-0.5.4/tidyquant/vignettes/TQ02-quant-integrations-in-tidyquant.Rmd     | 1106 ++---
 tidyquant-0.5.4/tidyquant/vignettes/TQ03-scaling-and-modeling-with-tidyquant.Rmd |  652 +--
 tidyquant-0.5.4/tidyquant/vignettes/TQ04-charting-with-tidyquant.Rmd             |  960 ++--
 tidyquant-0.5.4/tidyquant/vignettes/TQ05-performance-analysis-with-tidyquant.Rmd | 1388 +++---
 92 files changed, 17570 insertions(+), 17323 deletions(-)

More information about tidyquant at CRAN
Permanent link

Package stringr updated to version 1.3.0 with previous version 1.2.0 dated 2017-02-18

Title: Simple, Consistent Wrappers for Common String Operations
Description: A consistent, simple and easy to use set of wrappers around the fantastic 'stringi' package. All function and argument names (and positions) are consistent, all functions deal with "NA"'s and zero length vectors in the same way, and the output from one function is easy to feed into the input of another.
Author: Hadley Wickham [aut, cre, cph], RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between stringr versions 1.2.0 dated 2017-02-18 and 1.3.0 dated 2018-02-19

 stringr-1.2.0/stringr/R/pad-trim.r                         |only
 stringr-1.2.0/stringr/man/modifier-deprecated.Rd           |only
 stringr-1.3.0/stringr/DESCRIPTION                          |   26 
 stringr-1.3.0/stringr/MD5                                  |  154 +-
 stringr-1.3.0/stringr/NAMESPACE                            |    9 
 stringr-1.3.0/stringr/NEWS.md                              |   42 
 stringr-1.3.0/stringr/R/c.r                                |   28 
 stringr-1.3.0/stringr/R/conv.R                             |    2 
 stringr-1.3.0/stringr/R/count.r                            |    6 
 stringr-1.3.0/stringr/R/data.R                             |    4 
 stringr-1.3.0/stringr/R/detect.r                           |   21 
 stringr-1.3.0/stringr/R/dup.r                              |    2 
 stringr-1.3.0/stringr/R/extract.r                          |   10 
 stringr-1.3.0/stringr/R/flatten.R                          |only
 stringr-1.3.0/stringr/R/glue.R                             |only
 stringr-1.3.0/stringr/R/interp.R                           |   27 
 stringr-1.3.0/stringr/R/length.r                           |    2 
 stringr-1.3.0/stringr/R/locate.r                           |   14 
 stringr-1.3.0/stringr/R/match.r                            |   12 
 stringr-1.3.0/stringr/R/modifiers.r                        |   67 -
 stringr-1.3.0/stringr/R/pad.r                              |only
 stringr-1.3.0/stringr/R/remove.r                           |only
 stringr-1.3.0/stringr/R/replace.r                          |   45 
 stringr-1.3.0/stringr/R/sort.R                             |   14 
 stringr-1.3.0/stringr/R/split.r                            |   10 
 stringr-1.3.0/stringr/R/sub.r                              |   31 
 stringr-1.3.0/stringr/R/subset.R                           |   14 
 stringr-1.3.0/stringr/R/trim.R                             |only
 stringr-1.3.0/stringr/R/trunc.R                            |only
 stringr-1.3.0/stringr/R/view.R                             |    8 
 stringr-1.3.0/stringr/R/word.r                             |    3 
 stringr-1.3.0/stringr/R/wrap.r                             |    2 
 stringr-1.3.0/stringr/README.md                            |   10 
 stringr-1.3.0/stringr/build/vignette.rds                   |binary
 stringr-1.3.0/stringr/inst/doc/regular-expressions.Rmd     |   18 
 stringr-1.3.0/stringr/inst/doc/regular-expressions.html    |  596 +++++++---
 stringr-1.3.0/stringr/inst/doc/stringr.R                   |    2 
 stringr-1.3.0/stringr/inst/doc/stringr.Rmd                 |   50 
 stringr-1.3.0/stringr/inst/doc/stringr.html                |  708 ++++++++-----
 stringr-1.3.0/stringr/man/figures                          |only
 stringr-1.3.0/stringr/man/invert_match.Rd                  |    2 
 stringr-1.3.0/stringr/man/modifiers.Rd                     |   20 
 stringr-1.3.0/stringr/man/str_c.Rd                         |   21 
 stringr-1.3.0/stringr/man/str_conv.Rd                      |    2 
 stringr-1.3.0/stringr/man/str_count.Rd                     |   30 
 stringr-1.3.0/stringr/man/str_detect.Rd                    |   26 
 stringr-1.3.0/stringr/man/str_extract.Rd                   |   28 
 stringr-1.3.0/stringr/man/str_flatten.Rd                   |only
 stringr-1.3.0/stringr/man/str_glue.Rd                      |only
 stringr-1.3.0/stringr/man/str_interp.Rd                    |    9 
 stringr-1.3.0/stringr/man/str_length.Rd                    |    4 
 stringr-1.3.0/stringr/man/str_locate.Rd                    |   32 
 stringr-1.3.0/stringr/man/str_match.Rd                     |   12 
 stringr-1.3.0/stringr/man/str_order.Rd                     |    4 
 stringr-1.3.0/stringr/man/str_pad.Rd                       |    6 
 stringr-1.3.0/stringr/man/str_remove.Rd                    |only
 stringr-1.3.0/stringr/man/str_replace.Rd                   |   59 -
 stringr-1.3.0/stringr/man/str_split.Rd                     |   34 
 stringr-1.3.0/stringr/man/str_sub.Rd                       |   26 
 stringr-1.3.0/stringr/man/str_subset.Rd                    |   28 
 stringr-1.3.0/stringr/man/str_trim.Rd                      |   15 
 stringr-1.3.0/stringr/man/str_trunc.Rd                     |    4 
 stringr-1.3.0/stringr/man/str_view.Rd                      |   20 
 stringr-1.3.0/stringr/man/str_wrap.Rd                      |    2 
 stringr-1.3.0/stringr/man/stringr-package.Rd               |    2 
 stringr-1.3.0/stringr/man/word.Rd                          |    2 
 stringr-1.3.0/stringr/tests/testthat/test-case.R           |only
 stringr-1.3.0/stringr/tests/testthat/test-conv.R           |only
 stringr-1.3.0/stringr/tests/testthat/test-detect.r         |    1 
 stringr-1.3.0/stringr/tests/testthat/test-extract.r        |    8 
 stringr-1.3.0/stringr/tests/testthat/test-flatten.R        |only
 stringr-1.3.0/stringr/tests/testthat/test-glue.R           |only
 stringr-1.3.0/stringr/tests/testthat/test-interp.r         |    4 
 stringr-1.3.0/stringr/tests/testthat/test-match.r          |   11 
 stringr-1.3.0/stringr/tests/testthat/test-modifiers.r      |only
 stringr-1.3.0/stringr/tests/testthat/test-remove.r         |only
 stringr-1.3.0/stringr/tests/testthat/test-replace.r        |   12 
 stringr-1.3.0/stringr/tests/testthat/test-sort.R           |only
 stringr-1.3.0/stringr/tests/testthat/test-sub.r            |    9 
 stringr-1.3.0/stringr/tests/testthat/test-subset.r         |    6 
 stringr-1.3.0/stringr/tests/testthat/test-trim.r           |    6 
 stringr-1.3.0/stringr/tests/testthat/test-trunc.r          |only
 stringr-1.3.0/stringr/tests/testthat/test-view.R           |only
 stringr-1.3.0/stringr/tests/testthat/test-wrap.r           |    8 
 stringr-1.3.0/stringr/vignettes/regular-expressions.Rmd    |   18 
 stringr-1.3.0/stringr/vignettes/releases/stringr-1.0.0.Rmd |    1 
 stringr-1.3.0/stringr/vignettes/releases/stringr-1.1.0.Rmd |    1 
 stringr-1.3.0/stringr/vignettes/releases/stringr-1.2.0.Rmd |only
 stringr-1.3.0/stringr/vignettes/stringr.Rmd                |   50 
 89 files changed, 1481 insertions(+), 979 deletions(-)

More information about stringr at CRAN
Permanent link

Package qtl updated to version 1.42-8 with previous version 1.42-7 dated 2018-02-18

Title: Tools for Analyzing QTL Experiments
Description: Analysis of experimental crosses to identify genes (called quantitative trait loci, QTLs) contributing to variation in quantitative traits.
Author: Karl W Broman <kbroman@biostat.wisc.edu> and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron Wolen, and Brian Yandell
Maintainer: Karl W Broman <kbroman@biostat.wisc.edu>

Diff between qtl versions 1.42-7 dated 2018-02-18 and 1.42-8 dated 2018-02-19

 DESCRIPTION            |    9 +++----
 MD5                    |   16 ++++++------
 R/scantwo.R            |    3 --
 R/util.R               |   63 ++++++++++++++++++++++++-------------------------
 inst/INSTALL_ME.txt    |   12 ++++-----
 inst/STATUS.txt        |    5 +++
 inst/doc/bcsft.pdf     |binary
 inst/doc/rqtltour.pdf  |binary
 inst/doc/rqtltour2.pdf |binary
 9 files changed, 55 insertions(+), 53 deletions(-)

More information about qtl at CRAN
Permanent link

Package MetaComp updated to version 1.1.1 with previous version 1.0.1 dated 2017-03-02

Title: EDGE Taxonomy Assignments Visualization
Description: Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.
Author: Pavel Senin [aut, cre]
Maintainer: Pavel Senin <senin@hawaii.edu>

Diff between MetaComp versions 1.0.1 dated 2017-03-02 and 1.1.1 dated 2018-02-19

 MetaComp-1.0.1/MetaComp/R/load_bwa_assignment.R                                |only
 MetaComp-1.0.1/MetaComp/R/load_bwa_assignments.R                               |only
 MetaComp-1.0.1/MetaComp/R/load_gottcha2_assignment.R                           |only
 MetaComp-1.0.1/MetaComp/R/load_gottcha2_assignments.R                          |only
 MetaComp-1.0.1/MetaComp/R/load_gottcha_assignment.R                            |only
 MetaComp-1.0.1/MetaComp/R/load_gottcha_assignments.R                           |only
 MetaComp-1.0.1/MetaComp/R/load_kraken_assignment.R                             |only
 MetaComp-1.0.1/MetaComp/R/load_kraken_assignments.R                            |only
 MetaComp-1.0.1/MetaComp/R/load_metaphlan_assignment.R                          |only
 MetaComp-1.0.1/MetaComp/R/load_metaphlan_assignments.R                         |only
 MetaComp-1.0.1/MetaComp/R/merge_bwa_assignments.R                              |only
 MetaComp-1.0.1/MetaComp/R/merge_bwa_assignments_counts.R                       |only
 MetaComp-1.0.1/MetaComp/R/merge_gottcha_assignments.R                          |only
 MetaComp-1.0.1/MetaComp/R/merge_gottcha_assignments_count.R                    |only
 MetaComp-1.0.1/MetaComp/R/merge_kraken_assignments.R                           |only
 MetaComp-1.0.1/MetaComp/R/merge_metaphlan_assignments.R                        |only
 MetaComp-1.0.1/MetaComp/R/plot_bwa_assignment.R                                |only
 MetaComp-1.0.1/MetaComp/R/plot_gottcha_assignment.R                            |only
 MetaComp-1.0.1/MetaComp/R/plot_kraken_assignment.R                             |only
 MetaComp-1.0.1/MetaComp/R/plot_metaphlan_assignment.R                          |only
 MetaComp-1.0.1/MetaComp/man/load_bwa_assignment.Rd                             |only
 MetaComp-1.0.1/MetaComp/man/load_bwa_assignments.Rd                            |only
 MetaComp-1.0.1/MetaComp/man/load_gottcha2_assignment.Rd                        |only
 MetaComp-1.0.1/MetaComp/man/load_gottcha2_assignments.Rd                       |only
 MetaComp-1.0.1/MetaComp/man/load_gottcha_assignment.Rd                         |only
 MetaComp-1.0.1/MetaComp/man/load_gottcha_assignments.Rd                        |only
 MetaComp-1.0.1/MetaComp/man/load_kraken_assignment.Rd                          |only
 MetaComp-1.0.1/MetaComp/man/load_kraken_assignments.Rd                         |only
 MetaComp-1.0.1/MetaComp/man/load_metaphlan_assignment.Rd                       |only
 MetaComp-1.0.1/MetaComp/man/load_metaphlan_assignments.Rd                      |only
 MetaComp-1.0.1/MetaComp/man/merge_bwa_assignments.Rd                           |only
 MetaComp-1.0.1/MetaComp/man/merge_bwa_counts.Rd                                |only
 MetaComp-1.0.1/MetaComp/man/merge_gottcha_assignments.Rd                       |only
 MetaComp-1.0.1/MetaComp/man/merge_gottcha_counts.Rd                            |only
 MetaComp-1.0.1/MetaComp/man/merge_kraken_assignments.Rd                        |only
 MetaComp-1.0.1/MetaComp/man/merge_metaphlan_assignments.Rd                     |only
 MetaComp-1.0.1/MetaComp/man/plot_bwa_assignment.Rd                             |only
 MetaComp-1.0.1/MetaComp/man/plot_gottcha_assignment.Rd                         |only
 MetaComp-1.0.1/MetaComp/man/plot_kraken_assignment.Rd                          |only
 MetaComp-1.0.1/MetaComp/man/plot_metaphlan_assignment.Rd                       |only
 MetaComp-1.1.1/MetaComp/DESCRIPTION                                            |   14 
 MetaComp-1.1.1/MetaComp/MD5                                                    |  185 ++++++----
 MetaComp-1.1.1/MetaComp/NAMESPACE                                              |   27 -
 MetaComp-1.1.1/MetaComp/R/load_edge_assignment.R                               |only
 MetaComp-1.1.1/MetaComp/R/load_edge_assignments.R                              |only
 MetaComp-1.1.1/MetaComp/R/merge_edge_assignments.R                             |only
 MetaComp-1.1.1/MetaComp/R/merge_edge_counts.R                                  |only
 MetaComp-1.1.1/MetaComp/R/plot_edge_assignment.R                               |only
 MetaComp-1.1.1/MetaComp/R/plot_merged_assignment.R                             |   42 ++
 MetaComp-1.1.1/MetaComp/README.md                                              |   16 
 MetaComp-1.1.1/MetaComp/inst                                                   |only
 MetaComp-1.1.1/MetaComp/man/load_edge_assignment.Rd                            |only
 MetaComp-1.1.1/MetaComp/man/load_edge_assignments.Rd                           |only
 MetaComp-1.1.1/MetaComp/man/merge_edge_assignments.Rd                          |only
 MetaComp-1.1.1/MetaComp/man/merge_edge_counts.Rd                               |only
 MetaComp-1.1.1/MetaComp/man/plot_edge_assignment.Rd                            |only
 MetaComp-1.1.1/MetaComp/man/plot_merged_assignment.Rd                          |   24 +
 MetaComp-1.1.1/MetaComp/tests/test_data/HMP_even                               |only
 MetaComp-1.1.1/MetaComp/tests/test_data/HMP_stagger                            |only
 MetaComp-1.1.1/MetaComp/tests/test_data/bwa_emtpy_list.txt                     |only
 MetaComp-1.1.1/MetaComp/tests/test_data/test_all_taxa                          |only
 MetaComp-1.1.1/MetaComp/tests/test_data/test_table_diamond.txt                 |only
 MetaComp-1.1.1/MetaComp/tests/test_data/test_table_gottcha2.txt                |    1 
 MetaComp-1.1.1/MetaComp/tests/test_data/test_table_pangia.txt                  |only
 MetaComp-1.1.1/MetaComp/tests/testthat/Rplots.pdf                              |only
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_bwa_assignment.R              |   17 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_bwa_assignments.R             |    8 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_diamond_assignment.R          |only
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_diamond_assignments.R         |only
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_gottcha2_assignment.R         |   10 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_gottcha2_assignments.R        |   10 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_gottcha_assignment.R          |   10 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_gottcha_assignments.R         |    5 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_kraken_assignment.R           |    8 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_kraken_assignments.R          |    7 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_metaphlan_assignment.R        |   14 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_metaphlan_assignments.R       |    6 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_pangia_assignment.R           |only
 MetaComp-1.1.1/MetaComp/tests/testthat/test_load_pangia_assignments.R          |only
 MetaComp-1.1.1/MetaComp/tests/testthat/test_merge_bwa_assignments.R            |    6 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_merge_bwa_count_assignments.R      |    5 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_merge_diamond_assignments.R        |only
 MetaComp-1.1.1/MetaComp/tests/testthat/test_merge_gottcha2_assignments.R       |    8 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_merge_gottcha2_count_assignments.R |    8 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_merge_gottcha_assignments.R        |    6 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_merge_kraken_assignments.R         |    6 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_merge_metaphlan_assignments.R      |    6 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_merge_pangia_assignments.R         |only
 MetaComp-1.1.1/MetaComp/tests/testthat/test_pipeline.R                         |   13 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_bwa_assignment.R              |    5 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_diamond_assignment.R          |only
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_gottcha_assignment.R          |    4 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_kraken_assignment.R           |    7 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_merged_assignment_b.R         |    6 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_merged_assignment_d.R         |only
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_merged_assignment_g.R         |    4 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_merged_assignment_g2.R        |    6 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_merged_assignment_k.R         |    6 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_merged_assignment_m.R         |    6 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_merged_assignment_p.R         |only
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_metaphlan_assignment.R        |    7 
 MetaComp-1.1.1/MetaComp/tests/testthat/test_plot_pangia_assignment.R           |only
 102 files changed, 304 insertions(+), 209 deletions(-)

More information about MetaComp at CRAN
Permanent link

Package forcats updated to version 0.3.0 with previous version 0.2.0 dated 2017-01-23

Title: Tools for Working with Categorical Variables (Factors)
Description: Helpers for reordering factor levels (including moving specified levels to front, ordering by first appearance, reversing, and randomly shuffling), and tools for modifying factor levels (including collapsing rare levels into other, 'anonymising', and manually 'recoding').
Author: Hadley Wickham [aut, cre], RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between forcats versions 0.2.0 dated 2017-01-23 and 0.3.0 dated 2018-02-19

 forcats-0.2.0/forcats/tests/testthat/test-fct_reorder.R  |only
 forcats-0.3.0/forcats/DESCRIPTION                        |   18 +-
 forcats-0.3.0/forcats/MD5                                |  111 ++++++++-------
 forcats-0.3.0/forcats/NAMESPACE                          |    1 
 forcats-0.3.0/forcats/NEWS.md                            |   42 +++++
 forcats-0.3.0/forcats/R/anon.R                           |    2 
 forcats-0.3.0/forcats/R/as_factor.R                      |    4 
 forcats-0.3.0/forcats/R/c.R                              |   22 +-
 forcats-0.3.0/forcats/R/collapse.R                       |    8 -
 forcats-0.3.0/forcats/R/count.R                          |    6 
 forcats-0.3.0/forcats/R/drop.R                           |    6 
 forcats-0.3.0/forcats/R/expand.R                         |    6 
 forcats-0.3.0/forcats/R/explicit_na.R                    |   23 +--
 forcats-0.3.0/forcats/R/lump.R                           |   57 ++++++-
 forcats-0.3.0/forcats/R/lvls.R                           |   30 ++--
 forcats-0.3.0/forcats/R/other.R                          |    4 
 forcats-0.3.0/forcats/R/recode.R                         |   10 -
 forcats-0.3.0/forcats/R/relabel.R                        |   29 ++-
 forcats-0.3.0/forcats/R/relevel.R                        |   13 -
 forcats-0.3.0/forcats/R/reorder.R                        |   47 +++---
 forcats-0.3.0/forcats/R/rev.R                            |    4 
 forcats-0.3.0/forcats/R/shuffle.R                        |    2 
 forcats-0.3.0/forcats/R/unique.R                         |    2 
 forcats-0.3.0/forcats/R/utils.R                          |    8 -
 forcats-0.3.0/forcats/README.md                          |   71 ++++++---
 forcats-0.3.0/forcats/data/gss_cat.rda                   |binary
 forcats-0.3.0/forcats/man/as_factor.Rd                   |    4 
 forcats-0.3.0/forcats/man/fct_anon.Rd                    |    2 
 forcats-0.3.0/forcats/man/fct_c.Rd                       |   13 -
 forcats-0.3.0/forcats/man/fct_collapse.Rd                |    4 
 forcats-0.3.0/forcats/man/fct_count.Rd                   |    6 
 forcats-0.3.0/forcats/man/fct_drop.Rd                    |    4 
 forcats-0.3.0/forcats/man/fct_expand.Rd                  |    2 
 forcats-0.3.0/forcats/man/fct_explicit_na.Rd             |    2 
 forcats-0.3.0/forcats/man/fct_lump.Rd                    |   19 +-
 forcats-0.3.0/forcats/man/fct_other.Rd                   |    6 
 forcats-0.3.0/forcats/man/fct_recode.Rd                  |    6 
 forcats-0.3.0/forcats/man/fct_relabel.Rd                 |   19 +-
 forcats-0.3.0/forcats/man/fct_relevel.Rd                 |    7 
 forcats-0.3.0/forcats/man/fct_reorder.Rd                 |   24 +--
 forcats-0.3.0/forcats/man/fct_rev.Rd                     |    4 
 forcats-0.3.0/forcats/man/fct_shuffle.Rd                 |    2 
 forcats-0.3.0/forcats/man/fct_unique.Rd                  |    2 
 forcats-0.3.0/forcats/man/figures                        |only
 forcats-0.3.0/forcats/man/lvls.Rd                        |   10 -
 forcats-0.3.0/forcats/tests/testthat/test-anon.R         |only
 forcats-0.3.0/forcats/tests/testthat/test-as_factor.R    |   12 +
 forcats-0.3.0/forcats/tests/testthat/test-collapse.R     |only
 forcats-0.3.0/forcats/tests/testthat/test-count.R        |only
 forcats-0.3.0/forcats/tests/testthat/test-explicit_na.R  |only
 forcats-0.3.0/forcats/tests/testthat/test-fct_c.R        |    9 -
 forcats-0.3.0/forcats/tests/testthat/test-fct_drop.R     |    9 +
 forcats-0.3.0/forcats/tests/testthat/test-fct_lump.R     |   52 +++++++
 forcats-0.3.0/forcats/tests/testthat/test-fct_other.R    |    7 
 forcats-0.3.0/forcats/tests/testthat/test-fct_relabel.R  |   11 +
 forcats-0.3.0/forcats/tests/testthat/test-lvls.R         |   13 +
 forcats-0.3.0/forcats/tests/testthat/test-lvls_reorder.R |    5 
 forcats-0.3.0/forcats/tests/testthat/test-reorder.R      |only
 forcats-0.3.0/forcats/tests/testthat/test-rev.R          |only
 forcats-0.3.0/forcats/tests/testthat/test-shift.R        |only
 forcats-0.3.0/forcats/tests/testthat/test-shuffle.R      |only
 forcats-0.3.0/forcats/tests/testthat/test-utils.R        |only
 62 files changed, 517 insertions(+), 263 deletions(-)

More information about forcats at CRAN
Permanent link

Package dbplyr updated to version 1.2.1 with previous version 1.2.0 dated 2018-01-03

Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to work with remote database tables as if they are in-memory data frames. Basic features works with any database that has a 'DBI' back end; more advanced features require 'SQL' translation to be provided by the package author.
Author: Hadley Wickham [aut, cre], Edgar Ruiz [aut], RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between dbplyr versions 1.2.0 dated 2018-01-03 and 1.2.1 dated 2018-02-19

 DESCRIPTION                                |    6 
 MD5                                        |   20 -
 NEWS.md                                    |    4 
 R/db-odbc-mssql.R                          |    2 
 R/db-postgres.r                            |   46 ++--
 R/translate-sql-base.r                     |   13 -
 R/utils.r                                  |    4 
 inst/doc/dbplyr.html                       |  332 +++++++++++++++--------------
 inst/doc/new-backend.html                  |  118 +++++-----
 inst/doc/sql-translation.html              |  262 +++++++++++-----------
 tests/testthat/test-translate-postgresql.R |    2 
 11 files changed, 440 insertions(+), 369 deletions(-)

More information about dbplyr at CRAN
Permanent link

Package colorhcplot updated to version 1.3.1 with previous version 1.0 dated 2015-10-01

Title: Colorful Hierarchical Clustering Dendrograms
Description: Build dendrograms with sample groups highlighted by different colors. Visualize results of hierarchical clustering analyses as dendrograms whose leaves and labels are colored according to sample grouping. Assess whether data point grouping aligns to naturally occurring clusters.
Author: Damiano Fantini
Maintainer: Damiano Fantini <damiano.fantini@gmail.com>

Diff between colorhcplot versions 1.0 dated 2015-10-01 and 1.3.1 dated 2018-02-19

 DESCRIPTION                |   17 +--
 MD5                        |   19 ++-
 NAMESPACE                  |    2 
 R/colorhcplot-internal.R   |only
 R/colorhcplot.R            |  246 ++++++++++++++++++++++++++++-----------------
 build                      |only
 data                       |only
 inst                       |only
 man/colorhcplot-package.Rd |   21 ---
 man/colorhcplot.Rd         |  123 +++++++++-------------
 man/geneData.Rd            |only
 vignettes                  |only
 12 files changed, 233 insertions(+), 195 deletions(-)

More information about colorhcplot at CRAN
Permanent link

Package archivist updated to version 2.3 with previous version 2.2 dated 2017-11-25

Title: Tools for Storing, Restoring and Searching for R Objects
Description: Data exploration and modelling is a process in which a lot of data artifacts are produced. Artifacts like: subsets, data aggregates, plots, statistical models, different versions of data sets and different versions of results. The more projects we work with the more artifacts are produced and the harder it is to manage these artifacts. Archivist helps to store and manage artifacts created in R. Archivist allows you to store selected artifacts as a binary files together with their metadata and relations. Archivist allows to share artifacts with others, either through shared folder or github. Archivist allows to look for already created artifacts by using it's class, name, date of the creation or other properties. Makes it easy to restore such artifacts. Archivist allows to check if new artifact is the exact copy that was produced some time ago. That might be useful either for testing or caching.
Author: Przemyslaw Biecek [aut, cre], Marcin Kosinski [aut], Witold Chodor [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>

Diff between archivist versions 2.2 dated 2017-11-25 and 2.3 dated 2018-02-19

 DESCRIPTION                          |    6 +--
 MD5                                  |   54 ++++++++++++++++++-----------------
 NEWS.md                              |    7 ++++
 R/ahistory.R                         |    2 -
 R/archivistOptions.R                 |   11 +++++++
 R/cache.R                            |   13 +++++---
 R/copyToRepo.R                       |    1 
 R/deleteRepo.R                       |    3 +
 R/extractData.R                      |   40 ++++++++++++-------------
 R/getTags.R                          |    4 +-
 R/magrittr.R                         |    2 -
 R/md5hash.R                          |    2 +
 R/restoreLibraries.R                 |    1 
 R/rmFromRepo.R                       |    3 +
 R/saveToRepo.R                       |   12 +++----
 R/zzz.R                              |    2 +
 build/vignette.rds                   |binary
 inst/doc/jss2342.pdf                 |binary
 man/archivistOptions.Rd              |   11 +++++++
 man/cache.Rd                         |    5 ++-
 man/copyToRepo.Rd                    |    1 
 man/deleteLocalRepo.Rd               |    3 +
 man/getTags.Rd                       |    4 +-
 man/magrittr.Rd                      |    2 -
 man/restoreLibs.Rd                   |    1 
 man/saveToRepo.Rd                    |    2 -
 tests/testthat/test_hash_functions.R |only
 tests/testthat/test_locks.R          |only
 tests/testthat/test_splitTags.R      |    2 -
 29 files changed, 119 insertions(+), 75 deletions(-)

More information about archivist at CRAN
Permanent link

Package IROmiss updated to version 1.0.1 with previous version 1.0.0 dated 2018-01-17

Title: Imputation Regularized Optimization Algorithm
Description: Missing data are frequently encountered in high-dimensional data analysis, but they are usually difficult to deal with using standard algorithms, such as the EM algorithm and its variants. This package provides a general algorithm, the so-called Imputation Regularized Optimization (IRO) algorithm, for high-dimensional missing data problems. You can refer to Liang, F., Jia, B., Xue, J., Li, Q. and Luo, Y. (2018) at <arXiv:1802.02251> for detail.
Author: Bochao Jia [aut, ctb, cre, cph], Faming Liang [ctb]
Maintainer: Bochao Jia <jbc409@ufl.edu>

Diff between IROmiss versions 1.0.0 dated 2018-01-17 and 1.0.1 dated 2018-02-19

 DESCRIPTION            |   14 -
 MD5                    |   38 +--
 NAMESPACE              |    3 
 R/EyeICRO.R            |   16 +
 R/RCLM.R               |    4 
 R/SimRCLM.R            |only
 R/YeastIRO.R           |   36 +--
 data/eye_norm.rda      |binary
 man/EyeICRO.Rd         |   14 -
 man/GraphIRO.Rd        |    7 
 man/IROmiss-package.Rd |   19 -
 man/RCDat.Rd           |    4 
 man/RCLM.Rd            |   15 -
 man/RegICRO.Rd         |    2 
 man/SimGraDat.Rd       |    2 
 man/SimRCLM.Rd         |only
 man/SimRegDat.Rd       |    2 
 man/YeastIRO.Rd        |   14 -
 man/eye_norm.Rd        |    2 
 man/yeast.Rd           |    2 
 src/IROmiss.c          |  531 ++++++++++++++++++++++++-------------------------
 21 files changed, 368 insertions(+), 357 deletions(-)

More information about IROmiss at CRAN
Permanent link

Package textmineR updated to version 2.1 with previous version 2.0.6 dated 2017-08-17

Title: Functions for Text Mining and Topic Modeling
Description: An aid for text mining in R, with a syntax that should be familiar to experienced R users. Provides a wrapper for several topic models that take similarly-formatted input and give similarly-formatted output. Has additional functionality for analyzing and diagnostics for topic models.
Author: Thomas Jones [aut, cre], William Doane [ctb]
Maintainer: Thomas Jones <jones.thos.w@gmail.com>

Diff between textmineR versions 2.0.6 dated 2017-08-17 and 2.1 dated 2018-02-19

 DESCRIPTION               |   11 ++++----
 MD5                       |   63 ++++++++++++++++++++++++++++++----------------
 R/CalcProbCoherence.R     |   19 ++++++++-----
 R/Cluster2TopicModel.R    |    2 -
 R/CreateTcm.R             |   14 +++++-----
 R/Dtm2Tcm.R               |    4 +-
 R/FitCtmModel.R           |    2 -
 R/FitLdaModel.R           |    2 -
 R/FormatRawLdaOutput.R    |   35 ++++++++++++++++++++-----
 R/GetProbableTerms.R      |    2 -
 R/GetVocabFromDtm.R       |    2 -
 R/RecursiveRbind.R        |    2 -
 build                     |only
 inst                      |only
 man/CalcProbCoherence.Rd  |    8 ++---
 man/Cluster2TopicModel.Rd |    2 -
 man/CreateTcm.Rd          |   14 +++++-----
 man/Dtm2Tcm.Rd            |    4 +-
 man/FitCtmModel.Rd        |    2 -
 man/FitLdaModel.Rd        |    2 -
 man/FormatRawLdaOutput.Rd |    5 ++-
 man/GetProbableTerms.Rd   |    2 -
 man/GetVocabFromDtm.Rd    |    2 -
 man/RecursiveRbind.Rd     |    2 -
 vignettes                 |only
 25 files changed, 126 insertions(+), 75 deletions(-)

More information about textmineR at CRAN
Permanent link

Package GGIR updated to version 1.5-17 with previous version 1.5-16 dated 2018-01-17

Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in van Hees and colleagues (2014) <doi: 10.1152/japplphysiol.00421.2014> and (2015) <doi: 10.1371/journal.pone.0142533>. The package has been developed and tested for binary data from 'GENEActiv' <https://www.activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <http://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com/product/ax3>. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre], Zhou Fang [ctb], Jing Hua Zhao [ctb], Joe Heywood [ctb], Evgeny Mirkes [ctb], Severine Sabia [ctb], Jairo H Migueles [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>

Diff between GGIR versions 1.5-16 dated 2018-01-17 and 1.5-17 dated 2018-02-19

 DESCRIPTION         |    8 ++++----
 MD5                 |   18 +++++++++---------
 R/g.part3.R         |    6 ++++--
 R/g.shell.GGIR.R    |    8 ++++++--
 R/g.sib.det.R       |   18 ++++++++++++------
 README.md           |    4 +++-
 inst/NEWS.Rd        |    9 +++++++++
 man/GGIR-package.Rd |    4 ++--
 man/g.part3.Rd      |    6 +++++-
 man/g.sib.det.Rd    |    8 ++++++--
 10 files changed, 60 insertions(+), 29 deletions(-)

More information about GGIR at CRAN
Permanent link

Package archdata updated to version 1.2 with previous version 1.1 dated 2016-04-04

Title: Example Datasets from Archaeological Research
Description: The archdata package provides several types of data that are typically used in archaeological research. It provides all of the data sets used in "Quantitative Methods in Archaeology Using R" by David L Carlson, one of the Cambridge Manuals in Archaeology.
Author: David L. Carlson and Georg Roth
Maintainer: David L. Carlson <dcarlson@tamu.edu>

Diff between archdata versions 1.1 dated 2016-04-04 and 1.2 dated 2018-02-19

 DESCRIPTION             |   12 +++++------
 MD5                     |   50 +++++++++++++++++++++++++-----------------------
 NEWS                    |    3 ++
 data/Arnhofen.rda       |only
 data/OxfordPots.rda     |only
 man/Acheulean.Rd        |    4 ++-
 man/Arnhofen.Rd         |only
 man/BACups.Rd           |    2 -
 man/BarmoseI.grid.Rd    |    4 ++-
 man/BarmoseI.pp.Rd      |    4 ++-
 man/Bornholm.Rd         |    4 +--
 man/DartPoints.Rd       |    2 +
 man/ESASites.Rd         |    5 +++-
 man/EWBurials.Rd        |    2 +
 man/EndScrapers.Rd      |    5 ++--
 man/EngrBone.Rd         |    4 +--
 man/Fibulae.Rd          |    4 ++-
 man/Handaxes.Rd         |    4 ++-
 man/Mesolithic.Rd       |    2 -
 man/Nelson.Rd           |    4 ++-
 man/Olorgesailie.maj.Rd |    2 +
 man/Olorgesailie.sub.Rd |    2 +
 man/OxfordPots.Rd       |only
 man/PitHouses.Rd        |    4 +++
 man/RBGlass1.Rd         |    2 +
 man/RBPottery.Rd        |    6 ++++-
 man/Snodgrass.Rd        |    5 ++--
 man/archdata-package.Rd |    9 +++++---
 28 files changed, 95 insertions(+), 50 deletions(-)

More information about archdata at CRAN
Permanent link

Package fmriqa updated to version 0.3.0 with previous version 0.2.0 dated 2017-12-20

Title: Functional MRI Quality Assurance Routines
Description: Methods for performing fMRI quality assurance (QA) measurements of test objects. Heavily based on the fBIRN procedures detailed by Friedman and Glover (2006) <doi:10.1002/jmri.20583>.
Author: Martin Wilson [cre, aut]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>

Diff between fmriqa versions 0.2.0 dated 2017-12-20 and 0.3.0 dated 2018-02-19

 DESCRIPTION                    |   10 +--
 MD5                            |   14 ++--
 NEWS.md                        |    8 ++
 R/run_fmriqa.R                 |  134 ++++++++++++++++++++++++++++-------------
 build/vignette.rds             |binary
 inst/doc/fmriqa-intro.html     |   24 +++----
 man/run_fmriqa.Rd              |   19 ++++-
 tests/testthat/ref_results.rds |binary
 8 files changed, 141 insertions(+), 68 deletions(-)

More information about fmriqa at CRAN
Permanent link

Package rcompanion updated to version 1.11.3 with previous version 1.11.1 dated 2017-11-12

Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of Extension Program Evaluation in R" and "An R Companion for the Handbook of Biological Statistics". Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>

Diff between rcompanion versions 1.11.1 dated 2017-11-12 and 1.11.3 dated 2018-02-19

 DESCRIPTION                   |    8 +-
 MD5                           |   10 +-
 R/cateNelson.r                |  146 ++++++++++++++++++++++++++++--------------
 R/pairwisePercentileTest.r    |    2 
 man/cateNelson.Rd             |   16 ++++
 man/pairwisePercentileTest.Rd |    2 
 6 files changed, 126 insertions(+), 58 deletions(-)

More information about rcompanion at CRAN
Permanent link

Package clinDR updated to version 1.7 with previous version 1.6 dated 2017-12-04

Title: Simulation and Analysis Tools for Clinical Dose Response Modeling
Description: Bayesian and ML Emax model fitting, graphics and simulation for clinical dose response. The summary data from the dose response meta-analyses in Thomas, Sweeney, and Somayaji (2014) <doi:10.1080/19466315.2014.924876> and Thomas and Roy (2016) <doi:10.1080/19466315.2016.1256229> are included in the package. The prior distributions for the Bayesian analyses default to the posterior predictive distributions derived from these references.
Author: Neal Thomas [aut, cre] (<https://orcid.org/0000-0002-1915-8487>), Jing Wu [aut]
Maintainer: Neal Thomas <snthomas99@gmail.com>

Diff between clinDR versions 1.6 dated 2017-12-04 and 1.7 dated 2018-02-19

 DESCRIPTION                                                   |   10 -
 MD5                                                           |   88 +++++-----
 R/Brextract.R                                                 |    8 
 R/DRDensityPlot.R                                             |    8 
 R/emaxsim.R                                                   |   15 -
 R/emaxsimB.R                                                  |   14 -
 R/fitEmaxB.R                                                  |   13 +
 R/plot.emaxsim.R                                              |   10 -
 R/plot.emaxsimB.R                                             |   10 -
 R/plot.emaxsimobj.R                                           |   35 ++-
 inst/NEWS                                                     |   12 +
 inst/tests/extraGraphics/cmpFiles.txt                         |only
 inst/tests/extraGraphics/pdfoutput/output.densityplot_new.pdf |binary
 inst/tests/extraGraphics/pdfoutput/output.densityplot_old.pdf |binary
 inst/tests/extraGraphics/pdfoutput/output.emaxsimBobj_new.pdf |binary
 inst/tests/extraGraphics/pdfoutput/output.emaxsimBobj_old.pdf |binary
 inst/tests/extraGraphics/pdfoutput/output.emaxsimobj_new.pdf  |binary
 inst/tests/extraGraphics/pdfoutput/output.emaxsimobj_old.pdf  |binary
 inst/tests/extraGraphics/pdfoutput/output.fitEmaxB_new.pdf    |binary
 inst/tests/extraGraphics/pdfoutput/output.fitEmaxB_old.pdf    |binary
 inst/tests/extraGraphics/pdfoutput/output.fitEmax_new.pdf     |binary
 inst/tests/extraGraphics/pdfoutput/output.fitEmax_old.pdf     |binary
 inst/tests/extraGraphics/pdfoutput/output.plotB_new.pdf       |binary
 inst/tests/extraGraphics/pdfoutput/output.plotB_old.pdf       |binary
 inst/tests/extraGraphics/pdfoutput/output.plotD_new.pdf       |binary
 inst/tests/extraGraphics/pdfoutput/output.plotD_old.pdf       |binary
 inst/tests/extraGraphics/runGraphics.R                        |only
 inst/tests/extraGraphics/test.densityplots.R                  |   13 +
 inst/tests/extraGraphics/test.plot.emaxsimBobj.R              |    9 -
 inst/tests/extraGraphics/test.plot.emaxsimobj.R               |   11 -
 inst/tests/extraGraphics/test.plot.fitEmax.R                  |   12 -
 inst/tests/extraGraphics/test.plot.fitEmaxB.R                 |   13 -
 inst/tests/extraGraphics/test.plotB.R                         |   63 ++++---
 inst/tests/extraGraphics/test.plotD.R                         |   10 -
 inst/tests/test.emaxsim.R                                     |   77 ++++++++
 inst/tests/test.fitEmaxB.R                                    |    4 
 man/clinDR-package.Rd                                         |    4 
 man/compileStanModels.Rd                                      |    2 
 man/emaxsim.Rd                                                |   11 -
 man/emaxsimB.Rd                                               |    7 
 man/fitEmaxB.Rd                                               |    8 
 man/plot.emaxsim.Rd                                           |    4 
 man/plot.emaxsimB.Rd                                          |    4 
 man/plot.emaxsimBobj.Rd                                       |    2 
 man/plot.emaxsimobj.Rd                                        |    2 
 man/plotB.Rd                                                  |    3 
 46 files changed, 320 insertions(+), 162 deletions(-)

More information about clinDR at CRAN
Permanent link

Package bmrm updated to version 3.7 with previous version 3.4 dated 2017-08-16

Title: Bundle Methods for Regularized Risk Minimization Package
Description: Bundle methods for minimization of convex and non-convex risk under L1 or L2 regularization. Implements the algorithm proposed by Teo et al. (JMLR 2010) as well as the extension proposed by Do and Artieres (JMLR 2012). The package comes with lot of loss functions for machine learning which make it powerful for big data analysis. The applications includes: structured prediction, linear SVM, multi-class SVM, f-beta optimization, ROC optimization, ordinal regression, quantile regression, epsilon insensitive regression, least mean square, logistic regression, least absolute deviation regression (see package examples), etc... all with L1 and L2 regularization.
Author: Julien Prados
Maintainer: Julien Prados <julien.prados@unige.ch>

Diff between bmrm versions 3.4 dated 2017-08-16 and 3.7 dated 2018-02-19

 DESCRIPTION             |   10 -
 MD5                     |   26 +--
 NAMESPACE               |    3 
 R/loss_convex.R         |   24 +-
 R/ml_misc.R             |   85 ++++++++++
 R/mmc.R                 |   91 +++++-----
 R/nrbm.R                |   11 -
 R/svmLP.R               |    2 
 build/vignette.rds      |binary
 inst/doc/bmrm.html      |  408 +++++++++++++++++-------------------------------
 man/hclust.fca.Rd       |only
 man/iterative.hclust.Rd |only
 man/mmc.Rd              |   32 +--
 man/nrbm.Rd             |    9 -
 man/ontologyLoss.Rd     |   13 -
 15 files changed, 347 insertions(+), 367 deletions(-)

More information about bmrm at CRAN
Permanent link

Package funrar updated to version 1.2.1 with previous version 1.2.0 dated 2017-06-30

Title: Functional Rarity Indices Computation
Description: Computes functional rarity indices as proposed by Violle et al. (2017) <doi:10.1016/j.tree.2017.02.002>. Various indices can be computed using both regional and local information. Functional Rarity combines both the functional aspect of rarity as well as the extent aspect of rarity. funrar is presented in Grenié et al. (2017) <doi:10.1111/ddi.12629>.
Author: Matthias Grenié [aut, cre] (<https://orcid.org/0000-0002-4659-7522>), Pierre Denelle [aut] (<https://orcid.org/0000-0001-5037-2281>), Caroline Tucker [aut] (<https://orcid.org/0000-0002-4871-2010>), François Munoz [ths] (<https://orcid.org/0000-0001-8776-4705>), Cyrille Violle [ths] (<https://orcid.org/0000-0002-2471-9226>)
Maintainer: Matthias Grenié <matthias.grenie@gmail.com>

Diff between funrar versions 1.2.0 dated 2017-06-30 and 1.2.1 dated 2018-02-19

 DESCRIPTION                             |   30 
 MD5                                     |  101 +-
 NAMESPACE                               |   50 -
 NEWS.md                                 |   75 +-
 R/check_functions.R                     |  501 ++++++--------
 R/compute_dist_matrix.R                 |  191 ++---
 R/distinctiveness.R                     |  556 +++++++--------
 R/funrar.R                              |  226 +++---
 R/make_relative.R                       |  180 ++---
 R/rarity_dimensions.R                   |  272 +++----
 R/restrictedness.R                      |  274 +++----
 R/scarcity.R                            |  336 ++++-----
 R/stack_matrix.R                        |  338 +++++----
 R/uniqueness.R                          |  290 ++++----
 README.md                               |   99 +-
 build/vignette.rds                      |binary
 inst/CITATION                           |only
 inst/doc/rarity_indices.R               |  324 ++++-----
 inst/doc/rarity_indices.Rmd             |  700 +++++++++----------
 inst/doc/rarity_indices.html            | 1140 ++++++++++++++++----------------
 inst/doc/sparse_matrices.R              |  186 ++---
 inst/doc/sparse_matrices.Rmd            |  320 ++++----
 inst/doc/sparse_matrices.html           |  464 ++++++-------
 man/combination_trait_dist.Rd           |   44 -
 man/compute_dist_matrix.Rd              |  147 ++--
 man/distinctiveness.Rd                  |  160 ++--
 man/distinctiveness_com.Rd              |   93 +-
 man/distinctiveness_dimensions.Rd       |   94 +-
 man/distinctiveness_stack.Rd            |  127 +--
 man/funrar.Rd                           |   90 +-
 man/funrar_stack.Rd                     |   98 +-
 man/is_relative.Rd                      |   76 +-
 man/make_relative.Rd                    |   54 -
 man/matrix_to_stack.Rd                  |   92 +-
 man/restrictedness.Rd                   |  110 +--
 man/restrictedness_stack.Rd             |   88 +-
 man/scarcity.Rd                         |  102 +-
 man/scarcity_com.Rd                     |   82 +-
 man/scarcity_stack.Rd                   |  102 +-
 man/stack_to_matrix.Rd                  |   91 +-
 man/uniqueness.Rd                       |  128 +--
 man/uniqueness_dimensions.Rd            |   90 +-
 man/uniqueness_stack.Rd                 |  100 +-
 tests/testthat.R                        |    8 
 tests/testthat/test-check_functions.R   |  350 ++++-----
 tests/testthat/test-dist_matrix.R       |  290 ++++----
 tests/testthat/test-rarity_dimensions.R |  277 ++++---
 tests/testthat/test-rarity_indices.R    |  622 ++++++++---------
 tests/testthat/test-rel_abund.R         |  166 ++--
 tests/testthat/test-tidy_matrix.R       |  352 +++++----
 vignettes/rarity_indices.Rmd            |  700 +++++++++----------
 vignettes/sparse_matrices.Rmd           |  320 ++++----
 52 files changed, 5914 insertions(+), 5792 deletions(-)

More information about funrar at CRAN
Permanent link

Package confSAM updated to version 0.2 with previous version 0.1 dated 2017-01-18

Title: Estimates and Bounds for the False Discovery Proportion, by Permutation
Description: For multiple testing. Computes estimates and confidence bounds for the False Discovery Proportion (FDP), the fraction of false positives among all rejected hypotheses. The methods in the package use permutations of the data. Doing so, they take into account the dependence structure in the data.
Author: Jesse Hemerik and Jelle Goeman
Maintainer: Jesse Hemerik <j.b.a.hemerik@lumc.nl>

Diff between confSAM versions 0.1 dated 2017-01-18 and 0.2 dated 2018-02-19

 DESCRIPTION               |   10 +--
 MD5                       |   19 +++---
 R/confSAM.R               |  137 ++++++++++++++++++++++++++--------------------
 build/vignette.rds        |binary
 inst/doc/confSAM.R        |    2 
 inst/doc/confSAM.Rmd      |   18 +++---
 inst/doc/confSAM.pdf      |binary
 man/confSAM.Rd            |   15 ++---
 vignettes/confSAM.Rmd     |   18 +++---
 vignettes/confSAM.html    |only
 vignettes/referenties.bib |   12 ++++
 11 files changed, 133 insertions(+), 98 deletions(-)

More information about confSAM at CRAN
Permanent link

Package XML updated to version 3.98-1.10 with previous version 3.98-1.9 dated 2017-06-19

Title: Tools for Parsing and Generating XML Within R and S-Plus
Description: Many approaches for both reading and creating XML (and HTML) documents (including DTDs), both local and accessible via HTTP or FTP. Also offers access to an 'XPath' "interpreter".
Author: Duncan Temple Lang and the CRAN Team
Maintainer: ORPHANED

Diff between XML versions 3.98-1.9 dated 2017-06-19 and 3.98-1.10 dated 2018-02-19

 DESCRIPTION           |    6 +++---
 MD5                   |    4 ++--
 R/xmlInternalSource.R |    4 +++-
 3 files changed, 8 insertions(+), 6 deletions(-)

More information about XML at CRAN
Permanent link

Sun, 18 Feb 2018

Package SamplingStrata updated to version 1.2 with previous version 1.1 dated 2016-01-13

Title: Optimal Stratification of Sampling Frames for Multipurpose Sampling Surveys
Description: In the field of stratified sampling design, this package offers an approach for the determination of the best stratification of a sampling frame, the one that ensures the minimum sample cost under the condition to satisfy precision constraints in a multivariate and multidomain case. This approach is based on the use of the genetic algorithm: each solution (i.e. a particular partition in strata of the sampling frame) is considered as an individual in a population; the fitness of all individuals is evaluated applying the Bethel-Chromy algorithm to calculate the sampling size satisfying precision constraints on the target estimates. Functions in the package allows to: (a) analyse the obtained results of the optimisation step; (b) assign the new strata labels to the sampling frame; (c) select a sample from the new frame accordingly to the best allocation. Functions for the execution of the genetic algorithm are a modified version of the functions in the 'genalg' package.
Author: Giulio Barcaroli, Marco Ballin, Daniela Pagliuca, Egon Willighagen, Diego Zardetto
Maintainer: Giulio Barcaroli <gbarcaroli@gmail.com>

Diff between SamplingStrata versions 1.1 dated 2016-01-13 and 1.2 dated 2018-02-18

 SamplingStrata-1.1/SamplingStrata/R/rbgaV2.R                           |only
 SamplingStrata-1.2/SamplingStrata/DESCRIPTION                          |   12 
 SamplingStrata-1.2/SamplingStrata/MD5                                  |   44 -
 SamplingStrata-1.2/SamplingStrata/NAMESPACE                            |    3 
 SamplingStrata-1.2/SamplingStrata/NEWS                                 |   25 
 SamplingStrata-1.2/SamplingStrata/R/adjustSize.R                       |only
 SamplingStrata-1.2/SamplingStrata/R/aggrStrata.r                       |   20 
 SamplingStrata-1.2/SamplingStrata/R/buildFrameDF.R                     |only
 SamplingStrata-1.2/SamplingStrata/R/buildStrataDF.R                    |   10 
 SamplingStrata-1.2/SamplingStrata/R/evalSolution.r                     |  268 ++++++----
 SamplingStrata-1.2/SamplingStrata/R/optimizeStrata.R                   |   25 
 SamplingStrata-1.2/SamplingStrata/R/rbga_PPF_GGA.R                     |only
 SamplingStrata-1.2/SamplingStrata/R/strataGenalg.R                     |   12 
 SamplingStrata-1.2/SamplingStrata/R/updateFrame.R                      |    9 
 SamplingStrata-1.2/SamplingStrata/R/updateStrata.r                     |    9 
 SamplingStrata-1.2/SamplingStrata/build/vignette.rds                   |binary
 SamplingStrata-1.2/SamplingStrata/inst/doc/SamplingStrataVignette.R    |  106 +--
 SamplingStrata-1.2/SamplingStrata/inst/doc/SamplingStrataVignette.Rnw  |   99 ++-
 SamplingStrata-1.2/SamplingStrata/inst/doc/SamplingStrataVignette.pdf  |binary
 SamplingStrata-1.2/SamplingStrata/man/adjustSize.Rd                    |only
 SamplingStrata-1.2/SamplingStrata/man/bethel.Rd                        |    2 
 SamplingStrata-1.2/SamplingStrata/man/buildFrameDF.Rd                  |only
 SamplingStrata-1.2/SamplingStrata/man/evalSolution.Rd                  |   40 -
 SamplingStrata-1.2/SamplingStrata/man/optimizeStrata.Rd                |   24 
 SamplingStrata-1.2/SamplingStrata/vignettes/SamplingStrata.bib         |   16 
 SamplingStrata-1.2/SamplingStrata/vignettes/SamplingStrataVignette.Rnw |   99 ++-
 26 files changed, 542 insertions(+), 281 deletions(-)

More information about SamplingStrata at CRAN
Permanent link

Package RcppNumerical updated to version 0.3-2 with previous version 0.3-1 dated 2016-12-09

Title: 'Rcpp' Integration for Numerical Computing Libraries
Description: A collection of open source libraries for numerical computing (numerical integration, optimization, etc.) and their integration with 'Rcpp'.
Author: Yixuan Qiu [aut, cre], Sreekumar Balan [aut] (Numerical integration library), Matt Beall [aut] (Numerical integration library), Mark Sauder [aut] (Numerical integration library), Naoaki Okazaki [aut] (The libLBFGS library), Thomas Hahn [aut] (The Cuba library)
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>

Diff between RcppNumerical versions 0.3-1 dated 2016-12-09 and 0.3-2 dated 2018-02-18

 DESCRIPTION                       |   14 ++--
 MD5                               |   20 +++---
 R/RcppExports.R                   |    2 
 R/fastLR.R                        |    2 
 build/vignette.rds                |binary
 inst/NEWS.Rd                      |    9 ++
 inst/doc/introduction.html        |  116 +++++++++++++++++++-------------------
 inst/include/optimization/LBFGS.h |    2 
 man/fastLR.Rd                     |    7 --
 src/RcppExports.cpp               |    2 
 src/register_routines.c           |    9 ++
 11 files changed, 100 insertions(+), 83 deletions(-)

More information about RcppNumerical at CRAN
Permanent link

Package kernelboot updated to version 0.1.4 with previous version 0.1.3 dated 2017-12-18

Title: Smoothed Bootstrap and Random Generation from Kernel Densities
Description: Smoothed bootstrap and functions for random generation from univariate and multivariate kernel densities. It does not estimate kernel densities.
Author: Tymoteusz Wolodzko
Maintainer: Tymoteusz Wolodzko <twolodzko+kernelboot@gmail.com>

Diff between kernelboot versions 0.1.3 dated 2017-12-18 and 0.1.4 dated 2018-02-18

 DESCRIPTION           |   10 +++++-----
 MD5                   |    8 ++++----
 NAMESPACE             |    2 +-
 R/kernelboot.R        |    3 ++-
 tests/test_parallel.R |   27 ++++++++++++++++-----------
 5 files changed, 28 insertions(+), 22 deletions(-)

More information about kernelboot at CRAN
Permanent link

Package devtools updated to version 1.13.5 with previous version 1.13.4 dated 2017-11-09

Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut], Jim Hester [aut, cre], Winston Chang [aut], RStudio [cph], R Core team [ctb] (Some namespace and vignette code extracted from base R)
Maintainer: Jim Hester <james.hester@rstudio.com>

Diff between devtools versions 1.13.4 dated 2017-11-09 and 1.13.5 dated 2018-02-18

 DESCRIPTION                                    |   14 
 MD5                                            |   18 -
 NEWS.md                                        |    3 
 R/utils.r                                      |    4 
 build/vignette.rds                             |binary
 inst/doc/dependencies.html                     |  352 +++++++++++++++++++------
 tests/testthat/test-github.r                   |    1 
 tests/testthat/test-rtools.r                   |    2 
 tests/testthat/testDllRcpp/R/RcppExports.R     |    6 
 tests/testthat/testDllRcpp/src/RcppExports.cpp |   14 
 10 files changed, 323 insertions(+), 91 deletions(-)

More information about devtools at CRAN
Permanent link

Package rgdax updated to version 0.3.0 with previous version 0.2.0 dated 2018-01-09

Title: Wrapper for 'GDAX' Cryptocurrency Exchange
Description: Allow access to both public and private end points to 'GDAX' cryptocurrency exchange. For authenticated flow, users must have valid api, secret and passphrase to be able to connect. Read more details on getting access to 'GDAX' API at: <https://support.gdax.com/customer/en/portal/articles/2425383-how-can-i-create-an-api-key-for-gdax->.
Author: person("Dheeraj", "Agarwal", email = "dheeeraj.agarwal@gmail.com", role = c("aut", "cre"))
Maintainer: Dheeraj Agarwal <dheeeraj.agarwal@gmail.com>

Diff between rgdax versions 0.2.0 dated 2018-01-09 and 0.3.0 dated 2018-02-18

 DESCRIPTION                       |    6 ++--
 MD5                               |   17 ++++++-------
 NEWS.md                           |only
 R/accounts.R                      |    1 
 R/add_order.R                     |   14 +++++++---
 R/fills.R                         |   17 ++++++++++---
 README.md                         |   49 ++++++++++++++++++++++++--------------
 man/add_order.Rd                  |   11 ++++++--
 man/fills.Rd                      |    9 +++++-
 tests/testthat/test_public_info.R |    1 
 10 files changed, 83 insertions(+), 42 deletions(-)

More information about rgdax at CRAN
Permanent link

Package binequality updated to version 1.0.3 with previous version 1.0.2 dated 2017-07-09

Title: Methods for Analyzing Binned Income Data
Description: Methods for model selection, model averaging, and calculating metrics, such as the Gini, Theil, Mean Log Deviation, etc, on binned income data where the topmost bin is right-censored. We provide both a non-parametric method, termed the bounded midpoint estimator (BME), which assigns cases to their bin midpoints; except for the censored bins, where cases are assigned to an income estimated by fitting a Pareto distribution. Because the usual Pareto estimate can be inaccurate or undefined, especially in small samples, we implement a bounded Pareto estimate that yields much better results. We also provide a parametric approach, which fits distributions from the generalized beta (GB) family. Because some GB distributions can have poor fit or undefined estimates, we fit 10 GB-family distributions and use multimodel inference to obtain definite estimates from the best-fitting distributions. We also provide binned income data from all United States of America school districts, counties, and states.
Author: Samuel V. Scarpino, Paul von Hippel, and Igor Holas
Maintainer: Samuel V. Scarpino <s.scarpino@northeastern.edu>

Diff between binequality versions 1.0.2 dated 2017-07-09 and 1.0.3 dated 2018-02-18

 DESCRIPTION                |   10 +++++-----
 MD5                        |    6 +++---
 inst/CITATION              |   21 ++++++++++++++-------
 man/binequality-package.Rd |    8 ++++----
 4 files changed, 26 insertions(+), 19 deletions(-)

More information about binequality at CRAN
Permanent link

Package tfruns updated to version 1.3 with previous version 1.2 dated 2018-01-18

Title: Training Run Tools for 'TensorFlow'
Description: Create and manage unique directories for each 'TensorFlow' training run. Provides a unique, time stamped directory for each run along with functions to retrieve the directory of the latest run or latest several runs.
Author: JJ Allaire [aut, cre], RStudio [cph, fnd], Mike Bostock [cph] (D3 library - https://d3js.org/), Masayuki Tanaka [cph] (C3 library - http://c3js.org/), jQuery Foundation [cph] (jQuery library), jQuery contributors [cph] (jQuery library; authors: inst/views/components/jquery-AUTHORS.txt), Shaun Bowe [cph] (jQuery visibilityChanged plugin), Materialize [cph] (Materizlize library - https://materializecss.com/), Yuxi You [cph] (Vue.js library - https://vuejs.org/), Kevin Decker [cph] (jsdiff library - https://github.com/kpdecker/jsdiff/), Rodrigo Fernandes [cph] (diff2html library - https://diff2html.xyz/), Ivan Sagalaev [cph] (highlight.js library - https://highlightjs.org/), Yauheni Pakala [cph] (highlightjs-line-numbers library)
Maintainer: JJ Allaire <jj@rstudio.com>

Diff between tfruns versions 1.2 dated 2018-01-18 and 1.3 dated 2018-02-18

 DESCRIPTION            |    9 ++----
 MD5                    |   30 ++++++++++-----------
 R/ls_runs.R            |   69 ++++++++++++++++++++++++++++++++++++++++++++-----
 R/training_run.R       |    2 -
 inst/doc/managing.R    |   14 ---------
 inst/doc/managing.Rmd  |   34 ------------------------
 inst/doc/managing.html |   29 --------------------
 inst/doc/overview.R    |    4 +-
 inst/doc/overview.Rmd  |   40 ++++++++++++++++------------
 inst/doc/overview.html |   38 ++++++++++++++------------
 inst/doc/tuning.Rmd    |   57 ++++++++++++++++++++++++++++------------
 inst/doc/tuning.html   |   56 +++++++++++++++++++++++++++------------
 man/ls_runs.Rd         |   11 ++++++-
 vignettes/managing.Rmd |   34 ------------------------
 vignettes/overview.Rmd |   40 ++++++++++++++++------------
 vignettes/tuning.Rmd   |   57 ++++++++++++++++++++++++++++------------
 16 files changed, 280 insertions(+), 244 deletions(-)

More information about tfruns at CRAN
Permanent link

Package serrsBayes updated to version 0.3-12 with previous version 0.3-11 dated 2018-02-15

Title: Bayesian Modelling of Raman Spectroscopy
Description: Sequential Monte Carlo (SMC) algorithms for fitting a generalised additive mixed model (GAMM) to surface-enhanced resonance Raman spectroscopy (SERRS), using the method of Moores et al. (2016) <arXiv:1604.07299>. Multivariate observations of SERRS are highly collinear and lend themselves to a reduced-rank representation. The GAMM separates the SERRS signal into three components: a sequence of Lorentzian, Gaussian, or pseudo-Voigt peaks; a smoothly-varying baseline; and additive white noise. The parameters of each component of the model are estimated iteratively using SMC. The posterior distributions of the parameters given the observed spectra are represented as a population of weighted particles.
Author: Matt Moores [aut, cre] (<https://orcid.org/0000-0003-4531-3572>), Jake Carson [aut], Mark Girolami [aut], Engineering and Physical Sciences Research Council [fnd] (EPSRC programme grant ref: EP/L014165/1), University of Warwick [cph]
Maintainer: Matt Moores <M.T.Moores@warwick.ac.uk>

Diff between serrsBayes versions 0.3-11 dated 2018-02-15 and 0.3-12 dated 2018-02-18

 DESCRIPTION                      |   10 ++++++----
 MD5                              |   19 ++++++++++++++-----
 NEWS.md                          |    6 +++++-
 R/data.R                         |only
 README.md                        |    2 +-
 build                            |only
 data                             |only
 inst/doc                         |only
 inst/image/README-plotting-1.png |binary
 man/result.Rd                    |only
 src/mixVoigt.cpp                 |    2 +-
 vignettes                        |only
 12 files changed, 27 insertions(+), 12 deletions(-)

More information about serrsBayes at CRAN
Permanent link

Package gambin updated to version 2.3.0 with previous version 2.2.0 dated 2017-12-05

Title: Fit the Gambin Model to Species Abundance Distributions
Description: Fits unimodal and multimodal gambin distributions to species-abundance distributions from ecological data, as in in Matthews et al. (2014) <DOI:10.1111/ecog.00861>. 'gambin' is short for 'gamma-binomial'. The main function is fit_abundances(), which estimates the 'alpha' parameter(s) of the gambin distribution using maximum likelihood. Functions are also provided to generate the gambin distribution and for calculating likelihood statistics.
Author: Thomas Matthews [aut, cre], Michael Krabbe Borregaard [aut], Karl Ugland [aut], Colin Gillespie [aut]
Maintainer: Thomas Matthews <txm676@gmail.com>

Diff between gambin versions 2.2.0 dated 2017-12-05 and 2.3.0 dated 2018-02-18

 DESCRIPTION            |   14 +++++++-------
 MD5                    |   22 ++++++++++++----------
 NAMESPACE              |    1 +
 NEWS.md                |    5 +++++
 R/gambin-package.R     |   11 ++++++-----
 R/mult_abundances.R    |only
 README.md              |    9 ++++-----
 build/vignette.rds     |binary
 inst/doc/overview.Rmd  |   14 ++++++++++++++
 inst/doc/overview.html |   15 ++++++++-------
 man/gambin-package.Rd  |   11 ++++++-----
 man/mult_abundances.Rd |only
 vignettes/overview.Rmd |   14 ++++++++++++++
 13 files changed, 77 insertions(+), 39 deletions(-)

More information about gambin at CRAN
Permanent link

Package ratios updated to version 1.2.0 with previous version 1.1.0 dated 2017-07-18

Title: Calculating Ratios Between Two Data Sets and Correction for Adhering Particles on Plants
Description: Calculation of ratios between two data sets containing environmental data like element concentrations by different methods. Additionally plant element concentrations can be corrected for adhering particles (soil, airborne dust).
Author: Solveig Pospiech [aut, cre], Wiebke Fahlbusch [ctb]
Maintainer: Solveig Pospiech <s.pospiech@gmx.de>

Diff between ratios versions 1.1.0 dated 2017-07-18 and 1.2.0 dated 2018-02-18

 ratios-1.1.0/ratios/man/preparation.DT2.Rd              |only
 ratios-1.1.0/ratios/man/ratio.DT1_DT2.Rd                |only
 ratios-1.1.0/ratios/man/ratio.append_smallest.Rd        |only
 ratios-1.2.0/ratios/DESCRIPTION                         |    6 
 ratios-1.2.0/ratios/MD5                                 |   28 +--
 ratios-1.2.0/ratios/NAMESPACE                           |   19 +-
 ratios-1.2.0/ratios/NEWS.md                             |   27 +++
 ratios-1.2.0/ratios/R/CorrectionAdheringParticles.R     |   99 +++++++----
 ratios-1.2.0/ratios/R/Ratios.R                          |  142 ++++++++++------
 ratios-1.2.0/ratios/R/Subfunctions.R                    |   43 ++--
 ratios-1.2.0/ratios/R/pkgname.R                         |    2 
 ratios-1.2.0/ratios/man/Correction.AdheringParticles.Rd |   13 -
 ratios-1.2.0/ratios/man/preparationDT2.Rd               |only
 ratios-1.2.0/ratios/man/ratioDT.Rd                      |only
 ratios-1.2.0/ratios/man/ratio_append_smallest.Rd        |only
 ratios-1.2.0/ratios/man/ratios-package.Rd               |    2 
 ratios-1.2.0/ratios/man/relError_dataset.Rd             |    5 
 ratios-1.2.0/ratios/man/select.VarsElements.Rd          |    5 
 18 files changed, 256 insertions(+), 135 deletions(-)

More information about ratios at CRAN
Permanent link

Package Phase123 updated to version 1.4 with previous version 1.2 dated 2018-02-07

Title: Simulating and Conducting Phase 123 Trials
Description: Contains three simulation functions for implementing the entire Phase 123 trial and the separate Eff-Tox and Phase 3 portions of the trial, which may be beneficial for use on clusters. The functions AssignEffTox() and RandomizeEffTox() assign doses to patient cohorts during phase 12 and Reoptimize() determines the optimal dose to continue with during Phase 3. The functions ReturnMeansAgent() and ReturnMeanControl() gives the true mean survival for the agent doses and control and ReturnOCS() gives the operating characteristics of the design.
Author: Andrew G Chapple
Maintainer: Andrew Chapple <andrew.g.chapple@rice.edu>

Diff between Phase123 versions 1.2 dated 2018-02-07 and 1.4 dated 2018-02-18

 DESCRIPTION          |    6 +++---
 MD5                  |    4 ++--
 src/PHASE123CODE.cpp |   14 ++++++++++----
 3 files changed, 15 insertions(+), 9 deletions(-)

More information about Phase123 at CRAN
Permanent link

Package likelihoodAsy updated to version 0.50 with previous version 0.45 dated 2016-11-02

Title: Functions for Likelihood Asymptotics
Description: Functions for computing the r and r* statistics for inference on an arbitrary scalar function of model parameters, plus some code for the (modified) profile likelihood.
Author: Ruggero Bellio and Donald Pierce
Maintainer: Ruggero Bellio <ruggero.bellio@uniud.it>

Diff between likelihoodAsy versions 0.45 dated 2016-11-02 and 0.50 dated 2018-02-18

 likelihoodAsy-0.45/likelihoodAsy/vignettes/likelihoodAsy.bib  |only
 likelihoodAsy-0.50/likelihoodAsy/DESCRIPTION                  |    9 ++---
 likelihoodAsy-0.50/likelihoodAsy/MD5                          |   17 ++++------
 likelihoodAsy-0.50/likelihoodAsy/NAMESPACE                    |    2 -
 likelihoodAsy-0.50/likelihoodAsy/build/vignette.rds           |binary
 likelihoodAsy-0.50/likelihoodAsy/inst/doc/likelihoodAsy.R     |    2 -
 likelihoodAsy-0.50/likelihoodAsy/inst/doc/likelihoodAsy.Rnw   |    5 +-
 likelihoodAsy-0.50/likelihoodAsy/inst/doc/likelihoodAsy.pdf   |binary
 likelihoodAsy-0.50/likelihoodAsy/man/likelihoodAsy-package.Rd |    2 -
 likelihoodAsy-0.50/likelihoodAsy/vignettes/likelihoodAsy.Rnw  |    5 +-
 10 files changed, 22 insertions(+), 20 deletions(-)

More information about likelihoodAsy at CRAN
Permanent link

Package RJafroc updated to version 1.0.1 with previous version 1.0.0 dated 2018-02-04

Title: Modeling, Analysis, Validation and Visualization of Observer Performance Studies in Diagnostic Radiology
Description: Tools for quantitative assessment of medical imaging systems, radiologists or computer aided ('CAD') algorithms. Implements methods described in a book: 'Chakraborty' 'DP' (2017), "Observer Performance Methods for Diagnostic Imaging - Foundations, Modeling, and Applications with R-Based Examples", Taylor-Francis <https://www.crcpress.com/9781482214840>. Data collection paradigms include receiver operating characteristic ('ROC') and its location specific extensions, primarily free-response 'ROC' ('FROC'). 'ROC' data consists of a single rating per image, where the rating is the perceived confidence level the image is of a diseased patient. 'FROC' data consists of a variable number (including zero) of mark-rating pairs per image, where a mark is the location of a clinically reportable suspicious region and the rating is the corresponding confidence level that it is a true lesion. The software supersedes the current Windows version of 'JAFROC' software <http://www.devchakraborty.com>. 'RJafroc' is derived from it being an enhanced R version of original Windows 'JAFROC'. Implemented are a number of figures of merit quantifying performance, functions for visualizing operating characteristics; three ROC ratings data curve-fitting algorithms: the 'binormal' model ('BM'), the contaminated binormal model ('CBM') and the radiological search model ('RSM'). Unlike the 'BM', the 'CBM' and the 'RSM' predict proper ROC curves that do not cross the chance diagonal or display inappropriate hooks near the upper right corner of the plots. 'RSM' fitting additionally yields measures of search and lesion-classification performances, in addition to the usual case-classification performance measured by the area under the 'ROC' curve. Search performance is the ability to find lesions while avoiding finding non-lesions. Lesion-classification performance is the ability to discriminate between found lesions and non-lesions. For fully crossed study designs, termed multiple-reader multiple-case, significance testing of reader-averaged figure-of-merit differences between modalities is implemented via both 'Dorfman', 'Berbaum' and 'Metz' ('DBM') and the 'Obuchowski' and 'Rockette' ('OR') methods. Single treatment analysis allows comparison of performance of a group of radiologists to a specified value, or comparison of 'CAD' performance to a group of radiologists interpreting the same cases. Sample size estimation tools are provided for 'ROC' and 'FROC' studies that allow estimation of relevant variances from a pilot study to predict required numbers of readers and cases in a pivotal study. Utility and data file manipulation functions allow data to be read in any of the currently used input formats, including Excel, and the results of the analysis can be viewed in text or Excel output files. The package is used extensively in the online appendices of the cited book. Directions for accessing the online material are available by following the software tab of <http://www.devchakraborty.com>.
Author: Dev Chakraborty [cre, aut, cph], Xuetong Zhai [aut, cph], Lucy D'Agostino McGowan [ctb]
Maintainer: Dev Chakraborty <dpc10ster@gmail.com>

Diff between RJafroc versions 1.0.0 dated 2018-02-04 and 1.0.1 dated 2018-02-18

 DESCRIPTION                                   |   10 +-
 MD5                                           |  115 +++++++++++++-------------
 NEWS.md                                       |only
 R/DfReadDataFile.R                            |    2 
 R/DfReadLrocDataFile.R                        |    2 
 R/DfSaveDataFile.R                            |    2 
 R/ExampleCompare3ProperRocFits.R              |   26 ++---
 R/FitCbmRoc.R                                 |    4 
 R/FitRsmRoc.R                                 |    3 
 R/PlotEmpiricalOperatingCharacteristics.R     |    4 
 R/PlotRsmOperatingCharacteristics.R           |   27 ++++--
 R/SsFROCPowerGivenJK.R                        |    2 
 R/StSignificanceTestingSingleFixedFactor.R    |    6 -
 R/UtilAucBinormal.R                           |    4 
 R/UtilAucCBM.R                                |    2 
 R/UtilAucsRSM.R                               |    2 
 R/UtilFigureOfMerit.R                         |    2 
 R/UtilIntrinsic2PhysicalRSM.R                 |    2 
 R/UtilMeanSquares.R                           |    4 
 R/UtilOutputReport.R                          |    2 
 R/UtilPhysical2IntrinsicRSM.R                 |    2 
 R/datasets.R                                  |   54 ++++++------
 inst/doc                                      |only
 man/DfReadDataFile.Rd                         |    2 
 man/DfReadLrocDataFile.Rd                     |    2 
 man/DfSaveDataFile.Rd                         |    2 
 man/ExampleCompare3ProperRocFits.Rd           |   22 ++--
 man/FitRsmRoc.Rd                              |    1 
 man/PlotEmpiricalOperatingCharacteristics.Rd  |    4 
 man/PlotRsmOperatingCharacteristics.Rd        |   10 +-
 man/RJafroc-package.Rd                        |   10 +-
 man/SsFROCPowerGivenJK.Rd                     |    2 
 man/StSignificanceTestingSingleFixedFactor.Rd |    6 -
 man/UtilAucBinormal.Rd                        |    4 
 man/UtilAucCBM.Rd                             |    2 
 man/UtilAucsRSM.Rd                            |    2 
 man/UtilFigureOfMerit.Rd                      |    2 
 man/UtilIntrinsic2PhysicalRSM.Rd              |    2 
 man/UtilMeanSquares.Rd                        |    4 
 man/UtilOutputReport.Rd                       |    2 
 man/UtilPhysical2IntrinsicRSM.Rd              |    2 
 man/dataset01.Rd                              |    4 
 man/dataset02.Rd                              |   18 ++--
 man/dataset03.Rd                              |    2 
 man/dataset04.Rd                              |    2 
 man/dataset05.Rd                              |    2 
 man/dataset06.Rd                              |    2 
 man/dataset07.Rd                              |    2 
 man/dataset08.Rd                              |    2 
 man/dataset09.Rd                              |    2 
 man/dataset10.Rd                              |    2 
 man/dataset11.Rd                              |    2 
 man/dataset12.Rd                              |    2 
 man/dataset13.Rd                              |    2 
 man/dataset14.Rd                              |    4 
 man/datasetCadLroc.Rd                         |    2 
 man/datasetCrossedModality.Rd                 |    2 
 man/datasetDegenerate.Rd                      |    2 
 src/RsmFuncs.cpp                              |   16 +--
 59 files changed, 222 insertions(+), 206 deletions(-)

More information about RJafroc at CRAN
Permanent link

Package imbalance updated to version 1.0.0 with previous version 0.1.1 dated 2017-11-15

Title: Preprocessing Algorithms for Imbalanced Datasets
Description: Class imbalance usually damages the performance of classifiers. Thus, it is important to treat data before applying a classifier algorithm. This package includes recent resampling algorithms in the literature: (Barua et al. 2014) <doi:10.1109/tkde.2012.232>; (Das et al. 2015) <doi:10.1109/tkde.2014.2324567>, (Zhang et al. 2014) <doi:10.1016/j.inffus.2013.12.003>; (Gao et al. 2014) <doi:10.1016/j.neucom.2014.02.006>; (Almogahed et al. 2014) <doi:10.1007/s00500-014-1484-5>. It also includes an useful interface to perform oversampling.
Author: Ignacio Cordón [aut, cre], Salvador García [aut], Alberto Fernández [aut], Francisco Herrera [aut]
Maintainer: Ignacio Cordón <nacho.cordon.castillo@gmail.com>

Diff between imbalance versions 0.1.1 dated 2017-11-15 and 1.0.0 dated 2018-02-18

 DESCRIPTION                   |   33 ++++---
 MD5                           |   44 +++++----
 NAMESPACE                     |    3 
 R/data.R                      |   28 +++++
 R/imbalance.R                 |  197 ++++++++++++++++++++++++++++++------------
 R/mwmote.R                    |    6 -
 R/neater.R                    |   10 +-
 R/pdfos.R                     |    6 -
 R/racog.R                     |   93 ++++++++++++++-----
 R/rwo.R                       |    6 -
 R/utils.R                     |   87 ++++++++++--------
 README.md                     |   41 ++++++--
 build/vignette.rds            |binary
 data/banana.rda               |only
 data/banana_orig.rda          |only
 inst/doc/imbalance.Rmd        |    6 -
 inst/doc/imbalance.pdf        |binary
 man/banana.Rd                 |only
 man/imabalace.Rd              |   20 ++--
 man/imbalanceRatio.Rd         |only
 man/oversample.Rd             |only
 man/wracog.Rd                 |   25 ++++-
 src/neater.cpp                |    3 
 tests/testthat/testRACOG.R    |    4 
 tests/testthat/testwrappers.R |only
 vignettes/imbalance.Rmd       |    6 -
 26 files changed, 423 insertions(+), 195 deletions(-)

More information about imbalance at CRAN
Permanent link

Package githubinstall updated to version 0.2.2 with previous version 0.2.1 dated 2016-11-21

Title: A Helpful Way to Install R Packages Hosted on GitHub
Description: Provides an helpful way to install packages hosted on GitHub.
Author: Koji Makiyama [cre, aut], Atsushi Hayakawa [ctb], Shinya Uryu [ctb], Hiroaki Yutani [ctb], Nagi Teramo [ctb], Kazuhiro Maeda [ctb]
Maintainer: Koji Makiyama <hoxo.smile@gmail.com>

Diff between githubinstall versions 0.2.1 dated 2016-11-21 and 0.2.2 dated 2018-02-18

 DESCRIPTION                                |   19 
 LICENSE                                    |    4 
 MD5                                        |   86 +--
 NAMESPACE                                  |   42 -
 NEWS.md                                    |   51 +
 R/gh_install_packages.R                    |  206 ++++----
 R/gh_list_packages.R                       |   42 -
 R/gh_search_packages.R                     |   36 -
 R/gh_show_source.R                         |  104 ++--
 R/gh_suggest_username.R                    |   62 +-
 R/gh_sugget.R                              |  162 +++---
 R/gh_update_package_list.R                 |   26 -
 R/my_stringr.R                             |   30 -
 R/network.R                                |   34 -
 R/utils.R                                  |   34 -
 R/utils_for_install.R                      |  374 +++++++-------
 R/zzz.R                                    |   12 
 README.md                                  |  744 +++++++++++++++--------------
 build/vignette.rds                         |binary
 inst/doc/githubinstall.R                   |  197 ++++---
 inst/doc/githubinstall.Rmd                 |  633 ++++++++++++------------
 inst/doc/githubinstall.html                |  739 ++++++++++++++++++----------
 man/gh_install_packages.Rd                 |  113 ++--
 man/gh_list_packages.Rd                    |   47 -
 man/gh_search_packages.Rd                  |   51 -
 man/gh_show_source.Rd                      |   55 +-
 man/gh_suggest.Rd                          |   57 +-
 man/gh_suggest_username.Rd                 |   57 +-
 man/gh_update_package_list.Rd              |   23 
 man/recommend_dependencies.Rd              |   51 -
 man/reexports.Rd                           |   32 -
 man/remove_conflict_repos.Rd               |   51 -
 man/select_repository.Rd                   |   35 -
 man/separate_into_package_and_reference.Rd |   45 -
 tests/testthat.R                           |    8 
 tests/testthat/test-gh_install_packages.R  |   80 +--
 tests/testthat/test-gh_list_packages.R     |   14 
 tests/testthat/test-gh_search_packages.R   |   14 
 tests/testthat/test-gh_suggest.R           |  138 ++---
 tests/testthat/test-gh_suggest_username.R  |   26 -
 tests/testthat/test-really_install.R       |   54 +-
 tests/testthat/test-utils.R                |   30 -
 tests/testthat/test-utils_for_install.R    |  517 +++++++++-----------
 vignettes/githubinstall.Rmd                |  633 ++++++++++++------------
 44 files changed, 3021 insertions(+), 2747 deletions(-)

More information about githubinstall at CRAN
Permanent link

Package EpiILM updated to version 1.4.1 with previous version 1.4 dated 2018-02-03

Title: Spatial and Network Based Individual Level Models for Epidemics
Description: Provides tools for simulating from discrete-time individual level models for infectious disease data analysis. This epidemic model class contains spatial and contact-network based models with two disease types: Susceptible-Infectious (SI) and Susceptible-Infectious-Removed (SIR).
Author: Vineetha Warriyar. K. V. and Rob Deardon
Maintainer: Vineetha Warriyar. K. V. <vineethawarriyar.kod@ucalgary.ca>

Diff between EpiILM versions 1.4 dated 2018-02-03 and 1.4.1 dated 2018-02-18

 DESCRIPTION     |    8 ++--
 MD5             |   22 +++++------
 R/epiBR0.r      |    4 --
 R/epidata.r     |   33 +++++++++-------
 R/epidic.r      |    3 -
 R/epilike.r     |    3 -
 R/epimcmc.r     |    3 -
 R/epispatial.r  |    3 -
 man/epidata.Rd  |    8 +++-
 src/EpiBR0.f95  |    7 +--
 src/Epidata.f95 |  110 ++++++++++++++++++++++++++++++++++++++++++++++++--------
 src/ini.c       |   16 ++++----
 12 files changed, 146 insertions(+), 74 deletions(-)

More information about EpiILM at CRAN
Permanent link

Package ECOSolveR updated to version 0.4 with previous version 0.3-2 dated 2017-09-25

Title: Embedded Conic Solver in R
Description: R interface to the Embedded COnic Solver (ECOS), an efficient and robust C library for convex problems. Conic and equality constraints can be specified in addition to integer and boolean variable constraints for mixed-integer problems. This R interface is inspired by the python interface and has similar calling conventions.
Author: Anqi Fu [aut], Balasubramanian Narasimhan [aut, cre]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>

Diff between ECOSolveR versions 0.3-2 dated 2017-09-25 and 0.4 dated 2018-02-18

 ECOSolveR-0.3-2/ECOSolveR/src/ecos/__.SYMDEF           |only
 ECOSolveR-0.3-2/ECOSolveR/src/ecos/ecos.ts             |only
 ECOSolveR-0.4/ECOSolveR/DESCRIPTION                    |    8 +-
 ECOSolveR-0.4/ECOSolveR/MD5                            |   46 ++++++------
 ECOSolveR-0.4/ECOSolveR/R/ecos.R                       |    6 -
 ECOSolveR-0.4/ECOSolveR/R/firstlib.R                   |    2 
 ECOSolveR-0.4/ECOSolveR/README.md                      |    6 +
 ECOSolveR-0.4/ECOSolveR/build/vignette.rds             |binary
 ECOSolveR-0.4/ECOSolveR/cleanup                        |    2 
 ECOSolveR-0.4/ECOSolveR/inst/doc/examples.html         |   18 ++--
 ECOSolveR-0.4/ECOSolveR/man/ecos.control.Rd            |    2 
 ECOSolveR-0.4/ECOSolveR/src/ecos/CONTRIBUTING.md       |only
 ECOSolveR-0.4/ECOSolveR/src/ecos/Makefile              |    9 ++
 ECOSolveR-0.4/ECOSolveR/src/ecos/README.md             |    2 
 ECOSolveR-0.4/ECOSolveR/src/ecos/ecos-unix.mk          |   24 ++++--
 ECOSolveR-0.4/ECOSolveR/src/ecos/ecos-win.mk           |   12 ++-
 ECOSolveR-0.4/ECOSolveR/src/ecos/ecos.mk               |   24 ++++--
 ECOSolveR-0.4/ECOSolveR/src/ecos/external/amd/Makefile |    2 
 ECOSolveR-0.4/ECOSolveR/src/ecos/external/ldl/Makefile |    2 
 ECOSolveR-0.4/ECOSolveR/src/ecos/include/ecos.h        |   12 +++
 ECOSolveR-0.4/ECOSolveR/src/ecos/include/splamm.h      |    2 
 ECOSolveR-0.4/ECOSolveR/src/ecos/src/ecos.c            |   55 ++++++++++++---
 ECOSolveR-0.4/ECOSolveR/src/ecos/src/preproc.c         |   62 +++++++++++++----
 ECOSolveR-0.4/ECOSolveR/src/ecos/src/splamm.c          |    7 +
 ECOSolveR-0.4/ECOSolveR/src/ecos/test/ecostester.c     |    4 -
 ECOSolveR-0.4/ECOSolveR/src/ecos/test/updateData       |only
 26 files changed, 223 insertions(+), 84 deletions(-)

More information about ECOSolveR at CRAN
Permanent link

Package tidyLPA updated to version 0.1.2 with previous version 0.1.1 dated 2018-02-14

Title: Easily Carry Out Latent Profile Analysis
Description: An interface to the 'mclust' package to easily carry out latent profile analysis ("LPA"). Provides functionality to estimate commonly-specified models. Follows a tidy approach, in that output is in the form of a data frame that can subsequently be computed on. Also has functions to interface to the commercial 'MPlus' software via the 'MplusAutomation' package.
Author: Joshua M Rosenberg [aut, cre], Jennifer A Schmidt [ctb], Patrick N Beymer [ctb], Rebecca R Steingut [ctb]
Maintainer: Joshua M Rosenberg <jmichaelrosenberg@gmail.com>

Diff between tidyLPA versions 0.1.1 dated 2018-02-14 and 0.1.2 dated 2018-02-18

 DESCRIPTION                                   |    6 
 MD5                                           |   54 ++---
 NAMESPACE                                     |    1 
 NEWS.md                                       |   15 +
 R/compare_solutions.R                         |    2 
 R/compare_solutions_mplus.R                   |  117 +++++------
 R/estimate_profiles.R                         |    2 
 R/estimate_profiles_mplus.R                   |   24 +-
 R/helpers.R                                   |    4 
 R/plot_profiles.R                             |    4 
 R/plot_profiles_mplus.R                       |   14 -
 README.md                                     |   78 +++++--
 build/vignette.rds                            |binary
 inst/doc/Introduction_to_tidyLPA.R            |   48 +---
 inst/doc/Introduction_to_tidyLPA.Rmd          |  207 ++++++++++----------
 inst/doc/Introduction_to_tidyLPA.html         |  265 +++++++++++++++-----------
 man/compare_solutions.Rd                      |    4 
 man/compare_solutions_mplus.Rd                |    9 
 man/estimate_profiles.Rd                      |    4 
 man/estimate_profiles_mplus.Rd                |    4 
 man/figures/README-unnamed-chunk-5-1.png      |binary
 man/figures/README-unnamed-chunk-6-1.png      |only
 man/plot_profiles.Rd                          |    6 
 man/plot_profiles_mplus.Rd                    |    6 
 man/reexports.Rd                              |only
 tests/testthat/test-compare_solutions_mplus.R |   14 -
 tests/testthat/test-create_profiles_mplus.R   |   51 ++---
 tests/testthat/test-plot_profiles_mplus.R     |   14 -
 vignettes/Introduction_to_tidyLPA.Rmd         |  207 ++++++++++----------
 29 files changed, 644 insertions(+), 516 deletions(-)

More information about tidyLPA at CRAN
Permanent link

Package metamisc updated to version 0.1.8 with previous version 0.1.7 dated 2017-11-20

Title: Diagnostic and Prognostic Meta-Analysis
Description: Meta-analysis of diagnostic and prognostic modeling studies. Summarize estimates of prognostic factors, diagnostic test accuracy and prediction model performance. Validate, update and combine published prediction models. Develop new prediction models with data from multiple studies.
Author: Thomas Debray [aut, cre], Valentijn de Jong [aut]
Maintainer: Thomas Debray <thomas.debray@gmail.com>

Diff between metamisc versions 0.1.7 dated 2017-11-20 and 0.1.8 dated 2018-02-18

 metamisc-0.1.7/metamisc/man/rileyDA.Rd              |only
 metamisc-0.1.7/metamisc/man/rileyES.Rd              |only
 metamisc-0.1.8/metamisc/DESCRIPTION                 |   26 
 metamisc-0.1.8/metamisc/MD5                         |   76 +-
 metamisc-0.1.8/metamisc/NAMESPACE                   |  121 ++-
 metamisc-0.1.8/metamisc/R/basics.r                  |   78 +-
 metamisc-0.1.8/metamisc/R/bugsmodels.r              |   74 +-
 metamisc-0.1.8/metamisc/R/ccalc.r                   |only
 metamisc-0.1.8/metamisc/R/fat.r                     |    5 
 metamisc-0.1.8/metamisc/R/metapred.R                |   37 -
 metamisc-0.1.8/metamisc/R/plot_utils.r              |only
 metamisc-0.1.8/metamisc/R/riley.r                   |  617 +++++++++++++-----
 metamisc-0.1.8/metamisc/R/uvmeta.r                  |  299 ++++++--
 metamisc-0.1.8/metamisc/R/valmeta.r                 |  682 ++++++++++++--------
 metamisc-0.1.8/metamisc/R/valmeta_utils.r           |  468 +++++++++++--
 metamisc-0.1.8/metamisc/data/Collins.rda            |binary
 metamisc-0.1.8/metamisc/data/DVTipd.rda             |binary
 metamisc-0.1.8/metamisc/data/DVTmodels.rda          |binary
 metamisc-0.1.8/metamisc/data/Daniels.rda            |binary
 metamisc-0.1.8/metamisc/data/EuroSCORE.rda          |binary
 metamisc-0.1.8/metamisc/data/Fibrinogen.rda         |binary
 metamisc-0.1.8/metamisc/data/Framingham.rda         |binary
 metamisc-0.1.8/metamisc/data/Kertai.rda             |binary
 metamisc-0.1.8/metamisc/data/Roberts.rda            |binary
 metamisc-0.1.8/metamisc/data/Scheidler.rda          |binary
 metamisc-0.1.8/metamisc/inst/model/uvmeta_ranef.bug |   34 
 metamisc-0.1.8/metamisc/man/Daniels.Rd              |   58 -
 metamisc-0.1.8/metamisc/man/ccalc.Rd                |only
 metamisc-0.1.8/metamisc/man/coef.metapred.Rd        |only
 metamisc-0.1.8/metamisc/man/forest.Rd               |only
 metamisc-0.1.8/metamisc/man/logLik.riley.Rd         |   76 +-
 metamisc-0.1.8/metamisc/man/metamisc-package.Rd     |    6 
 metamisc-0.1.8/metamisc/man/metapred.Rd             |    8 
 metamisc-0.1.8/metamisc/man/plot.fat.Rd             |    1 
 metamisc-0.1.8/metamisc/man/plot.riley.Rd           |  102 +-
 metamisc-0.1.8/metamisc/man/plot.uvmeta.Rd          |only
 metamisc-0.1.8/metamisc/man/plot.valmeta.Rd         |   44 -
 metamisc-0.1.8/metamisc/man/predict.riley.Rd        |   59 -
 metamisc-0.1.8/metamisc/man/riley.Rd                |  210 +++---
 metamisc-0.1.8/metamisc/man/summary.riley.Rd        |   78 +-
 metamisc-0.1.8/metamisc/man/summary.uvmeta.Rd       |   77 --
 metamisc-0.1.8/metamisc/man/uvmeta.Rd               |  158 ++--
 metamisc-0.1.8/metamisc/man/valmeta.Rd              |  157 ++--
 43 files changed, 2371 insertions(+), 1180 deletions(-)

More information about metamisc at CRAN
Permanent link

Package bookdown updated to version 0.7 with previous version 0.6 dated 2018-01-25

Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), JJ Allaire [ctb], Albert Kim [ctb], Alessandro Samuel-Rosa [ctb], Andrzej Oles [ctb], Bastiaan Quast [ctb], Ben Marwick [ctb], Chester Ismay [ctb], Christophe Dervieux [ctb], Clifton Franklund [ctb], Daniel Emaasit [ctb], David Shuman [ctb], Dean Attali [ctb], Drew Tyre [ctb], Frans van Dunne [ctb], Hadley Wickham [ctb], Jeff Allen [ctb], Jennifer Bryan [ctb], Jonathan McPhers [ctb], Junwen Huang [ctb], Kevin Cheung [ctb], Kevin Ushey [ctb], Kim Seonghyun [ctb], Kirill Muller [ctb], Luciano Selzer [ctb], Matthew Lincoln [ctb], Maximilian Held [ctb], Michael Sachs [ctb], Michal Bojanowski [ctb], Peter Hickey [ctb], Sahir Bhatnagar [ctb], Steve Simpson [ctb], Vincent Fulco [ctb], Yixuan Qiu [ctb], Zhuoer Dong [ctb], RStudio Inc [cph], Bartek Szopka [ctb] (The jQuery Highlight plugin), jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/resources/AUTHORS), MathQuill contributors [ctb] (The MathQuill library; authors listed in inst/resources/AUTHORS), FriendCode Inc [cph, ctb] (The gitbook style, with modifications)
Maintainer: Yihui Xie <xie@yihui.name>

Diff between bookdown versions 0.6 dated 2018-01-25 and 0.7 dated 2018-02-18

 DESCRIPTION                                                |   12 ++++---
 MD5                                                        |   22 ++++++-------
 NEWS.md                                                    |   10 +++++
 R/ebook.R                                                  |    3 -
 R/gitbook.R                                                |    8 ++--
 R/latex.R                                                  |   11 ++----
 R/skeleton.R                                               |    2 -
 R/utils.R                                                  |   14 +-------
 R/word.R                                                   |    3 -
 README.md                                                  |    2 -
 inst/resources/gitbook/js/plugin-sharing.js                |    8 ++++
 inst/rstudio/templates/project/resources/06-references.Rmd |    2 -
 12 files changed, 51 insertions(+), 46 deletions(-)

More information about bookdown at CRAN
Permanent link

Package spacyr updated to version 0.9.6 with previous version 0.9.3 dated 2017-11-10

Title: Wrapper to the 'spaCy' 'NLP' Library
Description: An R wrapper to the 'Python' 'spaCy' 'NLP' library, from <http://spacy.io>.
Author: Kenneth Benoit [aut, cre, cph], Akitaka Matsuo [aut]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>

Diff between spacyr versions 0.9.3 dated 2017-11-10 and 0.9.6 dated 2018-02-18

 spacyr-0.9.3/spacyr/R/config.R                               |only
 spacyr-0.9.3/spacyr/inst/config_win                          |only
 spacyr-0.9.6/spacyr/DESCRIPTION                              |   16 
 spacyr-0.9.6/spacyr/MD5                                      |   39 -
 spacyr-0.9.6/spacyr/NEWS.md                                  |    8 
 spacyr-0.9.6/spacyr/R/spacy_initialize.R                     |  145 ++++-
 spacyr-0.9.6/spacyr/R/spacy_parse.R                          |   13 
 spacyr-0.9.6/spacyr/README.md                                |  296 +++++++----
 spacyr-0.9.6/spacyr/inst/doc/MAC.Rmd                         |    6 
 spacyr-0.9.6/spacyr/inst/doc/MAC.md                          |   24 
 spacyr-0.9.6/spacyr/inst/doc/WINDOWS.Rmd                     |    2 
 spacyr-0.9.6/spacyr/inst/doc/WINDOWS.md                      |   84 ++-
 spacyr-0.9.6/spacyr/inst/python/initialize_spacyPython.py    |    5 
 spacyr-0.9.6/spacyr/man/find_spacy.Rd                        |    6 
 spacyr-0.9.6/spacyr/man/spacy_initialize.Rd                  |   15 
 spacyr-0.9.6/spacyr/man/spacy_parse.Rd                       |    8 
 spacyr-0.9.6/spacyr/man/spacyr-package.Rd                    |    4 
 spacyr-0.9.6/spacyr/tests/testthat/test-1-spacy_initialize.R |    1 
 spacyr-0.9.6/spacyr/tests/testthat/test-2-spacy_parse.R      |   73 ++
 spacyr-0.9.6/spacyr/tests/testthat/test-3-entity-functions.R |   10 
 spacyr-0.9.6/spacyr/tests/testthat/test-4-quanteda-methods.R |    7 
 spacyr-0.9.6/spacyr/tests/testthat/utils.R                   |only
 22 files changed, 560 insertions(+), 202 deletions(-)

More information about spacyr at CRAN
Permanent link

Package qtl updated to version 1.42-7 with previous version 1.41-6 dated 2017-06-12

Title: Tools for Analyzing QTL Experiments
Description: Analysis of experimental crosses to identify genes (called quantitative trait loci, QTLs) contributing to variation in quantitative traits.
Author: Karl W Broman <kbroman@biostat.wisc.edu> and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron Wolen, and Brian Yandell
Maintainer: Karl W Broman <kbroman@biostat.wisc.edu>

Diff between qtl versions 1.41-6 dated 2017-06-12 and 1.42-7 dated 2018-02-18

 qtl-1.41-6/qtl/vignettes/fancyheadings.sty                   |only
 qtl-1.42-7/qtl/DESCRIPTION                                   |   12 
 qtl-1.42-7/qtl/MD5                                           |  147 +++++------
 qtl-1.42-7/qtl/NAMESPACE                                     |    4 
 qtl-1.42-7/qtl/R/bcsft.R                                     |   20 +
 qtl-1.42-7/qtl/R/errorlod.R                                  |    6 
 qtl-1.42-7/qtl/R/est.rf.R                                    |    6 
 qtl-1.42-7/qtl/R/mqmpermutation.R                            |   10 
 qtl-1.42-7/qtl/R/mqmscan.R                                   |    8 
 qtl-1.42-7/qtl/R/mqmutil.R                                   |    8 
 qtl-1.42-7/qtl/R/plot.R                                      |   14 -
 qtl-1.42-7/qtl/R/read.cross.R                                |    2 
 qtl-1.42-7/qtl/R/refineqtl.R                                 |   14 -
 qtl-1.42-7/qtl/R/stepwiseqtl.R                               |   20 -
 qtl-1.42-7/qtl/R/summary.scanone.R                           |   52 +++
 qtl-1.42-7/qtl/R/summary.scantwo.R                           |   10 
 qtl-1.42-7/qtl/build/vignette.rds                            |binary
 qtl-1.42-7/qtl/data/badorder.RData                           |binary
 qtl-1.42-7/qtl/data/bristle3.RData                           |binary
 qtl-1.42-7/qtl/data/bristleX.RData                           |binary
 qtl-1.42-7/qtl/data/fake.4way.RData                          |binary
 qtl-1.42-7/qtl/data/fake.bc.RData                            |binary
 qtl-1.42-7/qtl/data/fake.f2.RData                            |binary
 qtl-1.42-7/qtl/data/hyper.RData                              |binary
 qtl-1.42-7/qtl/data/listeria.RData                           |binary
 qtl-1.42-7/qtl/data/locations.RData                          |binary
 qtl-1.42-7/qtl/data/map10.RData                              |binary
 qtl-1.42-7/qtl/data/mapthis.RData                            |binary
 qtl-1.42-7/qtl/data/multitrait.RData                         |binary
 qtl-1.42-7/qtl/inst/INSTALL_ME.txt                           |   20 -
 qtl-1.42-7/qtl/inst/README.md                                |    4 
 qtl-1.42-7/qtl/inst/STATUS.txt                               |   57 +++-
 qtl-1.42-7/qtl/inst/doc/Sources/MQM/mqm/standard_seealso.txt |    4 
 qtl-1.42-7/qtl/inst/doc/bcsft.R                              |   21 -
 qtl-1.42-7/qtl/inst/doc/bcsft.Rnw                            |   24 +
 qtl-1.42-7/qtl/inst/doc/bcsft.pdf                            |binary
 qtl-1.42-7/qtl/inst/doc/rqtltour.pdf                         |binary
 qtl-1.42-7/qtl/inst/doc/rqtltour2.pdf                        |binary
 qtl-1.42-7/qtl/man/MQM.Rd                                    |   54 ++--
 qtl-1.42-7/qtl/man/a.starting.point.Rd                       |   10 
 qtl-1.42-7/qtl/man/addloctocross.Rd                          |   30 +-
 qtl-1.42-7/qtl/man/groupclusteredheatmap.Rd                  |   18 -
 qtl-1.42-7/qtl/man/mapthis.Rd                                |   12 
 qtl-1.42-7/qtl/man/mqmaugment.Rd                             |   36 +-
 qtl-1.42-7/qtl/man/mqmautocofactors.Rd                       |   28 +-
 qtl-1.42-7/qtl/man/mqmextractmarkers.Rd                      |   10 
 qtl-1.42-7/qtl/man/mqmfind.marker.Rd                         |    8 
 qtl-1.42-7/qtl/man/mqmgetmodel.Rd                            |   40 +-
 qtl-1.42-7/qtl/man/mqmpermutation.Rd                         |   14 -
 qtl-1.42-7/qtl/man/mqmplotcircle.Rd                          |   42 +--
 qtl-1.42-7/qtl/man/mqmplotcistrans.Rd                        |    6 
 qtl-1.42-7/qtl/man/mqmplotclusteredheatmap.Rd                |   12 
 qtl-1.42-7/qtl/man/mqmplotcofactors.Rd                       |   18 -
 qtl-1.42-7/qtl/man/mqmplotdirectedqtl.Rd                     |   20 -
 qtl-1.42-7/qtl/man/mqmplotheatmap.Rd                         |   12 
 qtl-1.42-7/qtl/man/mqmplotmultitrait.Rd                      |   12 
 qtl-1.42-7/qtl/man/mqmplotpermutations.Rd                    |    8 
 qtl-1.42-7/qtl/man/mqmplotsingletrait.Rd                     |   18 -
 qtl-1.42-7/qtl/man/mqmprocesspermutation.Rd                  |   10 
 qtl-1.42-7/qtl/man/mqmscan.Rd                                |   90 +++---
 qtl-1.42-7/qtl/man/mqmscanall.Rd                             |   42 +--
 qtl-1.42-7/qtl/man/mqmscanfdr.Rd                             |   54 ++--
 qtl-1.42-7/qtl/man/mqmsetcofactors.Rd                        |   36 +-
 qtl-1.42-7/qtl/man/mqmtestnormal.Rd                          |   26 -
 qtl-1.42-7/qtl/man/plot.errorlod.Rd                          |    5 
 qtl-1.42-7/qtl/man/plot.geno.Rd                              |   15 -
 qtl-1.42-7/qtl/man/plot.info.Rd                              |   15 -
 qtl-1.42-7/qtl/man/plot.missing.Rd                           |    5 
 qtl-1.42-7/qtl/man/plot.pheno.Rd                             |   11 
 qtl-1.42-7/qtl/man/plot.pxg.Rd                               |    1 
 qtl-1.42-7/qtl/man/plot.rf.Rd                                |    1 
 qtl-1.42-7/qtl/man/read.cross.Rd                             |   10 
 qtl-1.42-7/qtl/man/simulateMissingData.Rd                    |   14 -
 qtl-1.42-7/qtl/man/summary.scanoneperm.Rd                    |   14 -
 qtl-1.42-7/qtl/vignettes/bcsft.Rnw                           |   24 +
 75 files changed, 678 insertions(+), 566 deletions(-)

More information about qtl at CRAN
Permanent link

Package WRSS updated to version 1.1 with previous version 1.0 dated 2017-11-09

Title: Water Resources System Simulator
Description: Water resources system simulator is a tool for simulation and analysis of large-scale water resources systems.'WRSS' proposes functions and methods for construction, simulation and analysis of primary water resources features (e.g. reservoirs, aquifers, and etc.) based on Standard Operating Policy (SOP).
Author: Rezgar Arabzadeh; Parisa Aberi; Kaveh Panaghi; Shahab Araghinejad; Majid Montaseri
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>

Diff between WRSS versions 1.0 dated 2017-11-09 and 1.1 dated 2018-02-18

 WRSS-1.0/WRSS/man/figures/ex1.pdf    |only
 WRSS-1.0/WRSS/man/figures/ex1.png    |only
 WRSS-1.0/WRSS/man/figures/ex2.pdf    |only
 WRSS-1.0/WRSS/man/figures/ex2.png    |only
 WRSS-1.0/WRSS/man/figures/ex3.pdf    |only
 WRSS-1.0/WRSS/man/figures/ex3.png    |only
 WRSS-1.0/WRSS/man/figures/ex4.pdf    |only
 WRSS-1.0/WRSS/man/figures/ex4.png    |only
 WRSS-1.0/WRSS/man/figures/ex5.pdf    |only
 WRSS-1.0/WRSS/man/figures/ex5.png    |only
 WRSS-1.0/WRSS/man/figures/ex6.pdf    |only
 WRSS-1.0/WRSS/man/figures/ex6.png    |only
 WRSS-1.0/WRSS/man/figures/legend.pdf |only
 WRSS-1.0/WRSS/man/figures/legend.png |only
 WRSS-1.1/WRSS/DESCRIPTION            |   10 ++++----
 WRSS-1.1/WRSS/MD5                    |   25 ++++++----------------
 WRSS-1.1/WRSS/man/WRSS-package.Rd    |    6 ++---
 WRSS-1.1/WRSS/man/addObjectToArea.Rd |   39 ++++-------------------------------
 WRSS-1.1/WRSS/man/aquiferRouting.Rd  |    2 -
 WRSS-1.1/WRSS/man/figures/Fig.pdf    |only
 WRSS-1.1/WRSS/man/figures/Fig.png    |only
 WRSS-1.1/WRSS/man/figures/Thumbs.db  |only
 22 files changed, 21 insertions(+), 61 deletions(-)

More information about WRSS at CRAN
Permanent link

Package biosignalEMG updated to version 2.1.0 with previous version 2.0.2 dated 2018-02-09

Title: Tools for Electromyogram Signals (EMG) Analysis
Description: Data processing tools to compute the rectified, integrated and the averaged EMG. Routines for automatic detection of activation phases. A routine to compute and plot the ensemble average of the EMG. An EMG signal simulator for general purposes.
Author: J.A. Guerrero, J.E. Macias-Diaz
Maintainer: Antonio Guerrero <jaguerrero@correo.uaa.mx>

Diff between biosignalEMG versions 2.0.2 dated 2018-02-09 and 2.1.0 dated 2018-02-18

 DESCRIPTION                 |   10 ++--
 MD5                         |   92 ++++++++++++++++++++++----------------------
 NEWS                        |    6 ++
 R/ANDP.R                    |    2 
 R/MNChPD.R                  |    2 
 R/PCE.R                     |    2 
 R/PR.R                      |    2 
 R/TD.R                      |   14 +++---
 R/as.emg.R                  |    2 
 R/as.emg.data.frame.R       |    2 
 R/as.emg.default.R          |    2 
 R/as.emg.matrix.R           |    2 
 R/as.emg.numeric.R          |    2 
 R/biosignalEMG-internal.R   |    2 
 R/dcbiasremoval.R           |    2 
 R/eaemg.R                   |    5 +-
 R/emg.R                     |    2 
 R/envelope.R                |   28 ++++++++++---
 R/extractchannel.R          |    2 
 R/highpass.R                |    6 +-
 R/iemg.R                    |    6 +-
 R/integration.R             |    2 
 R/is.emg.R                  |    2 
 R/loadABF1.R                |    2 
 R/lowpass.R                 |only
 R/movingaverage.R           |   14 ++++--
 R/onoff_bonato.R            |    4 -
 R/onoff_singlethres.R       |    4 -
 R/phasestats.R              |   20 ++++-----
 R/plot.eaemg.R              |    2 
 R/plot.emg.R                |    5 +-
 R/plot.iemg.R               |    2 
 R/print.eaemg.R             |    2 
 R/print.emg.R               |    2 
 R/print.iemg.R              |    2 
 R/print.summary.eaemg.R     |    2 
 R/print.summary.emg.R       |    2 
 R/print.summary.iemg.R      |    2 
 R/rectification.R           |    2 
 R/summary.eaemg.R           |    2 
 R/summary.emg.R             |    5 +-
 R/summary.iemg.R            |    2 
 R/syntheticemg.R            |    2 
 R/whitening.R               |    2 
 man/biosignalEMG-package.Rd |    6 +-
 man/envelope.Rd             |   35 ++++++++--------
 man/highpass.Rd             |    9 ++--
 man/lowpass.Rd              |only
 48 files changed, 180 insertions(+), 147 deletions(-)

More information about biosignalEMG at CRAN
Permanent link

Sat, 17 Feb 2018

Package rstanarm updated to version 2.17.3 with previous version 2.17.2 dated 2017-12-21

Title: Bayesian Applied Regression Modeling via Stan
Description: Estimates previously compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. Users specify models via the customary R syntax with a formula and data.frame plus some additional arguments for priors.
Author: Jonah Gabry [aut], Imad Ali [ctb], Sam Brilleman [ctb], Jacqueline Buros Novik [ctb] (R/stan_jm.R), AstraZeneca [ctb] (R/stan_jm.R), Trustees of Columbia University [cph], Simon Wood [cph] (R/stan_gamm4.R), R Core Deveopment Team [cph] (R/stan_aov.R), Douglas Bates [cph] (R/pp_data.R), Martin Maechler [cph] (R/pp_data.R), Ben Bolker [cph] (R/pp_data.R), Steve Walker [cph] (R/pp_data.R), Brian Ripley [cph] (R/stan_aov.R, R/stan_polr.R), William Venables [cph] (R/stan_polr.R), Ben Goodrich [cre, aut]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

Diff between rstanarm versions 2.17.2 dated 2017-12-21 and 2.17.3 dated 2018-02-17

 DESCRIPTION                      |   15 ++++++++----
 MD5                              |   46 +++++++++++++++++++--------------------
 R/posterior_predict.R            |   21 ++++++++++++-----
 cleanup.win                      |    2 +
 inst/NEWS                        |    3 ++
 inst/doc/aov.html                |    4 +--
 inst/doc/betareg.html            |    4 +--
 inst/doc/binomial.html           |    4 +--
 inst/doc/continuous.html         |    8 +++---
 inst/doc/count.html              |    8 +++---
 inst/doc/glmer.R                 |    3 ++
 inst/doc/glmer.Rmd               |    4 +++
 inst/doc/glmer.html              |   21 +++++++++++++++--
 inst/doc/jm.html                 |   24 ++++++++++----------
 inst/doc/lm.html                 |    4 +--
 inst/doc/polr.html               |    4 +--
 inst/doc/pooling.html            |    8 +++---
 inst/doc/priors.html             |    6 ++---
 inst/doc/rstanarm.html           |    4 +--
 src/Makevars                     |   17 +++++++-------
 src/Makevars.win                 |    8 +++---
 tests/testthat/test_stan_nlmer.R |    2 -
 tools/make_cc.R                  |    2 -
 vignettes/glmer.Rmd              |    4 +++
 24 files changed, 136 insertions(+), 90 deletions(-)

More information about rstanarm at CRAN
Permanent link

Package pryr updated to version 0.1.4 with previous version 0.1.3 dated 2017-10-30

Title: Tools for Computing on the Language
Description: Useful tools to pry back the covers of R and understand the language at a deeper level.
Author: Hadley Wickham [aut, cre], R Core team [ctb] (Some code extracted from base R)
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between pryr versions 0.1.3 dated 2017-10-30 and 0.1.4 dated 2018-02-17

 DESCRIPTION                      |    6 +++---
 MD5                              |    4 ++--
 tests/testthat/test-track-copy.R |    2 +-
 3 files changed, 6 insertions(+), 6 deletions(-)

More information about pryr at CRAN
Permanent link

Package petro.One updated to version 0.1.3 with previous version 0.1.1 dated 2017-11-02

Title: Statistics and Text Mining for Oil and Gas Papers from OnePetro Metadata
Description: Application that retrieves papers metadata from the OnePetro website. Thousands of papers on oil and gas live in OnePetro. By retrieving metadata from the search queries, a summary of papers that match the query words, can be retrieved for further analysis and text mining. There are some statistics and data mining provided such as word cloud plots, keywords frequency, conversion to corpus document, and removal of common usage words. OnePetro link: <https://www.onepetro.org/>.
Author: Alfonso R. Reyes [aut, cre]
Maintainer: Alfonso R. Reyes <alfonso.reyes@oilgainsanalytics.com>

Diff between petro.One versions 0.1.1 dated 2017-11-02 and 0.1.3 dated 2018-02-17

 DESCRIPTION                                       |    9 
 MD5                                               |   43 ++--
 NAMESPACE                                         |    2 
 R/joining.R                                       |only
 R/text_mining.R                                   |    7 
 R/utils.R                                         |    2 
 README.md                                         |  224 ++++++++++------------
 build/vignette.rds                                |binary
 inst/doc/document_types_of_papers.html            |  148 ++++++--------
 inst/doc/gather_thousand_papers_to_dataframe.html |  192 +++++++++---------
 inst/doc/joining_keywords.R                       |only
 inst/doc/joining_keywords.Rmd                     |only
 inst/doc/joining_keywords.html                    |only
 inst/doc/make_wordcloud_01.html                   |   51 ++---
 inst/doc/make_wordcloud_02.html                   |   51 ++---
 inst/doc/permanent_downhole_gauge.html            |   81 +++----
 man/figures/README-unnamed-chunk-11-1.png         |binary
 man/figures/README-unnamed-chunk-12-1.png         |binary
 man/figures/README-unnamed-chunk-13-1.png         |binary
 man/figures/README-unnamed-chunk-14-1.png         |binary
 man/figures/README-unnamed-chunk-7-1.png          |binary
 man/figures/README-unnamed-chunk-9-1.png          |binary
 man/join_keywords.Rd                              |only
 tests/testthat/test_joining.R                     |only
 tests/testthat/test_multipage.R                   |   42 ++--
 vignettes/joining_keywords.Rmd                    |only
 26 files changed, 424 insertions(+), 428 deletions(-)

More information about petro.One at CRAN
Permanent link

Package kamila updated to version 0.1.1.2 with previous version 0.1.1.1 dated 2016-08-18

Title: Methods for Clustering Mixed-Type Data
Description: Implements methods for clustering mixed-type data, specifically combinations of continuous and nominal data. Special attention is paid to the often-overlooked problem of equitably balancing the contribution of the continuous and categorical variables. This package implements KAMILA clustering, a novel method for clustering mixed-type data in the spirit of k-means clustering. It does not require dummy coding of variables, and is efficient enough to scale to rather large data sets. Also implemented is Modha-Spangler clustering, which uses a brute-force strategy to maximize the cluster separation simultaneously in the continuous and categorical variables.
Author: Alexander Foss [aut, cre], Marianthi Markatou [aut]
Maintainer: Alexander Foss <alexanderhfoss@gmail.com>

Diff between kamila versions 0.1.1.1 dated 2016-08-18 and 0.1.1.2 dated 2018-02-17

 kamila-0.1.1.1/kamila/R/medea.R                                    |only
 kamila-0.1.1.1/kamila/R/prediction_strength_deprec.R               |only
 kamila-0.1.1.1/kamila/tests/testthat/test_medea.R                  |only
 kamila-0.1.1.1/kamila/tests/testthat/test_medea_helper_functions.R |only
 kamila-0.1.1.2/kamila/DESCRIPTION                                  |   12 
 kamila-0.1.1.2/kamila/LICENSE                                      |only
 kamila-0.1.1.2/kamila/MD5                                          |   46 
 kamila-0.1.1.2/kamila/NAMESPACE                                    |   47 
 kamila-0.1.1.2/kamila/R/RcppExports.R                              |   70 
 kamila-0.1.1.2/kamila/R/calc_approx_bic_deprec.R                   |   44 
 kamila-0.1.1.2/kamila/R/gen_mixed_data.R                           |  484 +-
 kamila-0.1.1.2/kamila/R/kamila.R                                   | 1895 +++++-----
 kamila-0.1.1.2/kamila/R/misc_functions.R                           |  556 +-
 kamila-0.1.1.2/kamila/R/modha_spangler.R                           |  440 +-
 kamila-0.1.1.2/kamila/README.md                                    |   21 
 kamila-0.1.1.2/kamila/inst                                         |only
 kamila-0.1.1.2/kamila/man/classifyKamila.Rd                        |   77 
 kamila-0.1.1.2/kamila/man/dummyCodeFactorDf.Rd                     |   45 
 kamila-0.1.1.2/kamila/man/genMixedData.Rd                          |  127 
 kamila-0.1.1.2/kamila/man/gmsClust.Rd                              |  146 
 kamila-0.1.1.2/kamila/man/kamila-package.Rd                        |  178 
 kamila-0.1.1.2/kamila/man/kamila.Rd                                |  199 -
 kamila-0.1.1.2/kamila/man/wkmeans.Rd                               |  115 
 kamila-0.1.1.2/kamila/src/cppfunctions.cpp                         |    5 
 kamila-0.1.1.2/kamila/tests/testthat.R                             |    8 
 kamila-0.1.1.2/kamila/tests/testthat/test_gmsClust.R               |   28 
 kamila-0.1.1.2/kamila/tests/testthat/test_kamila.R                 |  120 
 27 files changed, 2359 insertions(+), 2304 deletions(-)

More information about kamila at CRAN
Permanent link

Package grattan updated to version 1.5.3.5 with previous version 1.5.3.1 dated 2018-01-21

Title: Australian Tax Policy Analysis
Description: Utilities for costing and evaluating Australian tax policy, including high-performance tax and transfer calculators, a fast method of projecting tax collections, and an interface to common indices from the Australian Bureau of Statistics. Written to support Grattan Institute's Australian Perspectives program. For access to the 'taxstats' package, please run install.packages("taxstats", repos = "https://hughparsonage.github.io/drat/", type = "source"). N.B. The 'taxstats' package is approximately 50 MB.
Author: Hugh Parsonage [aut, cre], Tim Cameron [aut], Brendan Coates [aut], William Young [aut], Ittima Cherastidtham [dtc], W. Karsten [ctb], M. Enrique Garcia [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>

Diff between grattan versions 1.5.3.1 dated 2018-01-21 and 1.5.3.5 dated 2018-02-17

 grattan-1.5.3.1/grattan/inst/doc/Modelling-superannuation-changes.R      |only
 grattan-1.5.3.1/grattan/inst/doc/Modelling-superannuation-changes.Rmd    |only
 grattan-1.5.3.1/grattan/inst/doc/Modelling-superannuation-changes.html   |only
 grattan-1.5.3.1/grattan/inst/doc/Performance-of-project.R                |only
 grattan-1.5.3.1/grattan/inst/doc/Performance-of-project.Rmd              |only
 grattan-1.5.3.1/grattan/inst/doc/Performance-of-project.html             |only
 grattan-1.5.3.1/grattan/inst/doc/bracket-creep.R                         |only
 grattan-1.5.3.1/grattan/inst/doc/bracket-creep.Rmd                       |only
 grattan-1.5.3.1/grattan/inst/doc/bracket-creep.html                      |only
 grattan-1.5.3.1/grattan/inst/doc/companion-to-sample-file-1314.R         |only
 grattan-1.5.3.1/grattan/inst/doc/companion-to-sample-file-1314.Rmd       |only
 grattan-1.5.3.1/grattan/inst/doc/companion-to-sample-file-1314.html      |only
 grattan-1.5.3.1/grattan/inst/doc/differential-uprating.R                 |only
 grattan-1.5.3.1/grattan/inst/doc/differential-uprating.Rmd               |only
 grattan-1.5.3.1/grattan/inst/doc/differential-uprating.html              |only
 grattan-1.5.3.1/grattan/tests/testthat/helper-grattan.R                  |only
 grattan-1.5.3.1/grattan/vignettes/Modelling-superannuation-changes.Rmd   |only
 grattan-1.5.3.1/grattan/vignettes/Performance-of-project.Rmd             |only
 grattan-1.5.3.1/grattan/vignettes/bracket-creep.Rmd                      |only
 grattan-1.5.3.1/grattan/vignettes/companion-to-sample-file-1314.Rmd      |only
 grattan-1.5.3.1/grattan/vignettes/differential-uprating.Rmd              |only
 grattan-1.5.3.5/grattan/DESCRIPTION                                      |   13 -
 grattan-1.5.3.5/grattan/MD5                                              |   91 ++++------
 grattan-1.5.3.5/grattan/NEWS.md                                          |   11 -
 grattan-1.5.3.5/grattan/R/cpi_general_date.R                             |    3 
 grattan-1.5.3.5/grattan/R/cpi_inflator_quarters.R                        |    2 
 grattan-1.5.3.5/grattan/R/income_tax.R                                   |   18 -
 grattan-1.5.3.5/grattan/R/inflator.R                                     |    3 
 grattan-1.5.3.5/grattan/R/lf_inflator.R                                  |    2 
 grattan-1.5.3.5/grattan/R/new_income_tax.R                               |    3 
 grattan-1.5.3.5/grattan/R/new_medicare_levy.R                            |    3 
 grattan-1.5.3.5/grattan/R/prohibit_vector_recycling.R                    |    3 
 grattan-1.5.3.5/grattan/R/project.R                                      |    3 
 grattan-1.5.3.5/grattan/R/project_to.R                                   |    3 
 grattan-1.5.3.5/grattan/R/rebate_income.R                                |    2 
 grattan-1.5.3.5/grattan/R/sapto.R                                        |    3 
 grattan-1.5.3.5/grattan/R/student_repayment.R                            |    3 
 grattan-1.5.3.5/grattan/R/sysdata.rda                                    |binary
 grattan-1.5.3.5/grattan/R/wage_inflator.R                                |    3 
 grattan-1.5.3.5/grattan/README.md                                        |   32 +--
 grattan-1.5.3.5/grattan/build/vignette.rds                               |binary
 grattan-1.5.3.5/grattan/inst/doc/grattan.R                               |only
 grattan-1.5.3.5/grattan/inst/doc/grattan.Rmd                             |only
 grattan-1.5.3.5/grattan/inst/doc/grattan.html                            |only
 grattan-1.5.3.5/grattan/man/lf_inflator.Rd                               |    2 
 grattan-1.5.3.5/grattan/tests/testthat.R                                 |   24 ++
 grattan-1.5.3.5/grattan/tests/testthat/test_differentially_uprate_wage.R |    3 
 grattan-1.5.3.5/grattan/tests/testthat/test_generic_inflator.R           |    2 
 grattan-1.5.3.5/grattan/tests/testthat/test_incomeTaxCollections.R       |   16 +
 grattan-1.5.3.5/grattan/tests/testthat/test_income_tax_cpp.R             |    2 
 grattan-1.5.3.5/grattan/tests/testthat/test_incometax_dotsATO.R          |    6 
 grattan-1.5.3.5/grattan/tests/testthat/test_inverse_income.R             |   13 +
 grattan-1.5.3.5/grattan/tests/testthat/test_isfy.R                       |    3 
 grattan-1.5.3.5/grattan/tests/testthat/test_lf_inflator.R                |    4 
 grattan-1.5.3.5/grattan/tests/testthat/test_new_income_tax.R             |    4 
 grattan-1.5.3.5/grattan/tests/testthat/test_pmax_friends.R               |    3 
 grattan-1.5.3.5/grattan/tests/testthat/test_student_repayment.R          |    3 
 grattan-1.5.3.5/grattan/tests/testthat/test_total_receipts.R             |    3 
 grattan-1.5.3.5/grattan/vignettes/grattan.Rmd                            |only
 59 files changed, 165 insertions(+), 124 deletions(-)

More information about grattan at CRAN
Permanent link

Package detrendr updated to version 0.4.0 with previous version 0.2.0 dated 2018-01-04

Title: Detrend Images
Description: Image series affected by bleaching must be corrected by 'detrending' prior to the performance of quantitative analysis. 'detrendr' is for correctly detrending images. It uses Nolan's algorithm (Nolan et al., 2017 <doi:10.1093/bioinformatics/btx434>).
Author: Rory Nolan [aut, cre, cph], Sergi Padilla-Parra [ths, cph]
Maintainer: Rory Nolan <rorynoolan@gmail.com>

Diff between detrendr versions 0.2.0 dated 2018-01-04 and 0.4.0 dated 2018-02-17

 detrendr-0.2.0/detrendr/README.md                                |only
 detrendr-0.2.0/detrendr/tests/testthat/test_best_tau.R           |only
 detrendr-0.2.0/detrendr/tests/testthat/test_detrend.R            |only
 detrendr-0.2.0/detrendr/tests/testthat/test_pillar_stats.R       |only
 detrendr-0.2.0/detrendr/tests/testthat/test_pillar_utils.R       |only
 detrendr-0.2.0/detrendr/tests/testthat/test_utils.R              |only
 detrendr-0.4.0/detrendr/DESCRIPTION                              |   14 
 detrendr-0.4.0/detrendr/MD5                                      |   68 -
 detrendr-0.4.0/detrendr/NAMESPACE                                |    4 
 detrendr-0.4.0/detrendr/NEWS.md                                  |   21 
 detrendr-0.4.0/detrendr/R/best_degree.R                          |   54 +
 detrendr-0.4.0/detrendr/R/best_l.R                               |   81 +-
 detrendr-0.4.0/detrendr/R/best_tau.R                             |   57 +
 detrendr-0.4.0/detrendr/R/class_constructors.R                   |   26 
 detrendr-0.4.0/detrendr/R/detrend.R                              |  191 +++--
 detrendr-0.4.0/detrendr/R/detrendr.R                             |    4 
 detrendr-0.4.0/detrendr/R/dir_detrend.R                          |only
 detrendr-0.4.0/detrendr/R/pillar_stats.R                         |    4 
 detrendr-0.4.0/detrendr/R/utils.R                                |   32 
 detrendr-0.4.0/detrendr/inst/doc/detrendr.R                      |   34 
 detrendr-0.4.0/detrendr/inst/doc/detrendr.Rmd                    |   45 -
 detrendr-0.4.0/detrendr/inst/doc/detrendr.html                   |  374 +++++++---
 detrendr-0.4.0/detrendr/inst/extdata/bleached.tif                |binary
 detrendr-0.4.0/detrendr/man/best_l.Rd                            |    8 
 detrendr-0.4.0/detrendr/man/best_tau.Rd                          |    5 
 detrendr-0.4.0/detrendr/man/detrend-directory.Rd                 |only
 detrendr-0.4.0/detrendr/man/detrended_img.Rd                     |   12 
 detrendr-0.4.0/detrendr/man/detrending.Rd                        |   50 -
 detrendr-0.4.0/detrendr/man/detrendr.Rd                          |    3 
 detrendr-0.4.0/detrendr/man/pillar-stats.Rd                      |    4 
 detrendr-0.4.0/detrendr/src/pillar_stats_parallel.cpp            |   74 -
 detrendr-0.4.0/detrendr/src/pillar_utils.h                       |   25 
 detrendr-0.4.0/detrendr/src/summary_stats.h                      |    2 
 detrendr-0.4.0/detrendr/tests/testthat/test-best_params.R        |only
 detrendr-0.4.0/detrendr/tests/testthat/test-class_constructors.R |only
 detrendr-0.4.0/detrendr/tests/testthat/test-detrend.R            |only
 detrendr-0.4.0/detrendr/tests/testthat/test-dir_detrend.R        |only
 detrendr-0.4.0/detrendr/tests/testthat/test-iterators.R          |only
 detrendr-0.4.0/detrendr/tests/testthat/test-pillar_stats.R       |only
 detrendr-0.4.0/detrendr/tests/testthat/test-pillar_utils.R       |only
 detrendr-0.4.0/detrendr/tests/testthat/test-smooth.R             |    1 
 detrendr-0.4.0/detrendr/tests/testthat/test-utils.R              |only
 detrendr-0.4.0/detrendr/vignettes/detrendr.Rmd                   |   45 -
 43 files changed, 783 insertions(+), 455 deletions(-)

More information about detrendr at CRAN
Permanent link

Package CovTools updated to version 0.3.0 with previous version 0.2.1 dated 2017-11-15

Title: Statistical Tools for Covariance Analysis
Description: Covariance is of universal prevalence across various disciplines within statistics. We provide a rich collection of geometric and inferential tools for convenient analysis of covariance structures, topics including distance measures, mean covariance estimator, covariance hypothesis test for one-sample and two-sample cases, and covariance estimation. For an introduction to covariance in multivariate statistical analysis, see Schervish (1987) <doi:10.1214/ss/1177013111>.
Author: Kyoungjae Lee [aut], Lizhen Lin [ctb], Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyou@nd.edu>

Diff between CovTools versions 0.2.1 dated 2017-11-15 and 0.3.0 dated 2018-02-17

 CovTools-0.2.1/CovTools/R/CovEst.R              |only
 CovTools-0.2.1/CovTools/R/CovEst.auto.R         |only
 CovTools-0.2.1/CovTools/R/PreEst.R              |only
 CovTools-0.2.1/CovTools/R/PreEst.auto.R         |only
 CovTools-0.2.1/CovTools/man/CovEst.Rd           |only
 CovTools-0.2.1/CovTools/man/CovEst.auto.Rd      |only
 CovTools-0.2.1/CovTools/man/PreEst.Rd           |only
 CovTools-0.2.1/CovTools/man/PreEst.auto.Rd      |only
 CovTools-0.3.0/CovTools/DESCRIPTION             |   13 
 CovTools-0.3.0/CovTools/MD5                     |   59 ++-
 CovTools-0.3.0/CovTools/NAMESPACE               |   14 
 CovTools-0.3.0/CovTools/R/CovDist.R             |    5 
 CovTools-0.3.0/CovTools/R/CovEst.adaptive.R     |only
 CovTools-0.3.0/CovTools/R/CovEst.hard.R         |only
 CovTools-0.3.0/CovTools/R/CovEst.hardPD.R       |only
 CovTools-0.3.0/CovTools/R/CovEst.nearPD.R       |only
 CovTools-0.3.0/CovTools/R/CovEst.soft.R         |only
 CovTools-0.3.0/CovTools/R/CovMean.R             |    4 
 CovTools-0.3.0/CovTools/R/CovTest1.R            |    6 
 CovTools-0.3.0/CovTools/R/CovTest2.R            |    4 
 CovTools-0.3.0/CovTools/R/PreEst.banded1.R      |only
 CovTools-0.3.0/CovTools/R/PreEst.banded2.R      |only
 CovTools-0.3.0/CovTools/R/PreEst.banded3.R      |only
 CovTools-0.3.0/CovTools/R/PreEst.glasso.R       |only
 CovTools-0.3.0/CovTools/R/auxiliary.R           |    4 
 CovTools-0.3.0/CovTools/R/auxiliary_invisible.R |only
 CovTools-0.3.0/CovTools/R/fns.covest.R          |  359 ++----------------------
 CovTools-0.3.0/CovTools/R/package-CovTools.R    |   46 ++-
 CovTools-0.3.0/CovTools/build                   |only
 CovTools-0.3.0/CovTools/inst                    |only
 CovTools-0.3.0/CovTools/man/CovDist.Rd          |    4 
 CovTools-0.3.0/CovTools/man/CovEst.adaptive.Rd  |only
 CovTools-0.3.0/CovTools/man/CovEst.hard.Rd      |only
 CovTools-0.3.0/CovTools/man/CovEst.hardPD.Rd    |only
 CovTools-0.3.0/CovTools/man/CovEst.nearPD.Rd    |only
 CovTools-0.3.0/CovTools/man/CovEst.soft.Rd      |only
 CovTools-0.3.0/CovTools/man/CovMean.Rd          |    4 
 CovTools-0.3.0/CovTools/man/CovTest1.Rd         |    4 
 CovTools-0.3.0/CovTools/man/CovTest2.Rd         |    4 
 CovTools-0.3.0/CovTools/man/CovTools-package.Rd |   46 ++-
 CovTools-0.3.0/CovTools/man/PreEst.banded1.Rd   |only
 CovTools-0.3.0/CovTools/man/PreEst.banded2.Rd   |only
 CovTools-0.3.0/CovTools/man/PreEst.banded3.Rd   |only
 CovTools-0.3.0/CovTools/man/PreEst.glasso.Rd    |only
 CovTools-0.3.0/CovTools/man/samplecovs.Rd       |    4 
 45 files changed, 188 insertions(+), 392 deletions(-)

More information about CovTools at CRAN
Permanent link

Package gamlss.spatial updated to version 1.3.5 with previous version 1.3.4 dated 2017-08-10

Title: Spatial Terms in Generalized Additive Models for Location Scale and Shape Models
Description: It allows us to fit Gaussian Markov Random Field within the Generalized Additive Models for Location Scale and Shape algorithms.
Author: Fernanda De Bastiani [aut, cre, cph], Mikis Stasinopoulos [aut], Robert Rigby [aut]
Maintainer: Fernanda De Bastiani <fernandadebastiani@gmail.com>

Diff between gamlss.spatial versions 1.3.4 dated 2017-08-10 and 1.3.5 dated 2018-02-17

 gamlss.spatial-1.3.4/gamlss.spatial/build       |only
 gamlss.spatial-1.3.4/gamlss.spatial/inst        |only
 gamlss.spatial-1.3.4/gamlss.spatial/vignettes   |only
 gamlss.spatial-1.3.5/gamlss.spatial/DESCRIPTION |   15 ++---
 gamlss.spatial-1.3.5/gamlss.spatial/MD5         |   64 ------------------------
 5 files changed, 8 insertions(+), 71 deletions(-)

More information about gamlss.spatial at CRAN
Permanent link

Package Compind updated to version 2.0 with previous version 1.2.1 dated 2017-12-07

Title: Composite Indicators Functions
Description: Contains functions to enhance approaches to the Composite Indicators methods, focusing, in particular, on the normalisation and weighting-aggregation steps.
Author: Francesco Vidoli, Elisa Fusco
Maintainer: Francesco Vidoli <fvidoli@gmail.com>

Diff between Compind versions 1.2.1 dated 2017-12-07 and 2.0 dated 2018-02-17

 DESCRIPTION                   |   14 +++++++-------
 MD5                           |   36 +++++++++++++++++++++++++-----------
 NAMESPACE                     |   14 ++++++++++++++
 NEWS                          |   19 ++++++++++++++++++-
 R/bandwidth_CI.R              |only
 R/ci_ampi.R                   |only
 R/ci_bod_constr_bad.R         |only
 R/ci_rbod_constr_bad.R        |only
 R/ci_rbod_constr_bad_Q.R      |only
 R/ci_rbod_spatial.R           |only
 R/ci_smaa_constr.R            |only
 data/EU_2020.rda              |binary
 data/EU_NUTS1.rda             |binary
 inst/CITATION                 |   25 ++++++++++++-------------
 inst/doc/Compind_vignette.pdf |binary
 man/Compind-package.Rd        |   14 ++++++++++----
 man/bandwidth_CI.Rd           |only
 man/ci_ampi.Rd                |only
 man/ci_bod_constr.Rd          |    4 ++--
 man/ci_bod_constr_bad.Rd      |only
 man/ci_geom_gen.Rd            |    2 +-
 man/ci_rbod.Rd                |    2 +-
 man/ci_rbod_constr_bad.Rd     |only
 man/ci_rbod_constr_bad_Q.Rd   |only
 man/ci_rbod_spatial.Rd        |only
 man/ci_smaa_constr.Rd         |only
 26 files changed, 90 insertions(+), 40 deletions(-)

More information about Compind at CRAN
Permanent link

Fri, 16 Feb 2018

Package PowerUpR updated to version 0.2.3 with previous version 0.1.3 dated 2017-02-17

Title: Power Analysis Tools for Multilevel Randomized Experiments
Description: R version of PowerUp! <https://www.causalevaluation.org/>. Includes tools to calculate statistical power, minimum detectable effect size, and minimum required sample size for various multilevel randomized experiments with continuous outcomes.
Author: Metin Bulus [aut, cre, trl], Nianbo Dong [aut]
Maintainer: Metin Bulus <bulusmetin@gmail.com>

Diff between PowerUpR versions 0.1.3 dated 2017-02-17 and 0.2.3 dated 2018-02-16

 PowerUpR-0.1.3/PowerUpR/R/obj.conv.R                                       |only
 PowerUpR-0.1.3/PowerUpR/R/plot.pars.R                                      |only
 PowerUpR-0.1.3/PowerUpR/R/t1t2.error.R                                     |only
 PowerUpR-0.1.3/PowerUpR/inst/doc/vignettes.R                               |only
 PowerUpR-0.1.3/PowerUpR/inst/doc/vignettes.Rmd                             |only
 PowerUpR-0.1.3/PowerUpR/inst/doc/vignettes.html                            |only
 PowerUpR-0.1.3/PowerUpR/man/PowerUpR.Rd                                    |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.bcra3f2.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.bcra3r2.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.bcra4f3.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.bcra4r2.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.bcra4r3.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.bira2c1.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.bira2f1.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.bira2r1.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.bira3r1.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.bira4r1.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.cra2r2.Rd                                 |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.cra3r3.Rd                                 |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.cra4r4.Rd                                 |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.ira1r1.Rd                                 |only
 PowerUpR-0.1.3/PowerUpR/man/mdes.to.pctl.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.bcra3f2.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.bcra3r2.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.bcra4f3.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.bcra4r2.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.bcra4r3.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.bira2c1.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.bira2f1.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.bira2r1.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.bira3r1.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.bira4r1.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.cra2r2.Rd                                 |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.cra3r3.Rd                                 |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.cra4r4.Rd                                 |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.ira1r1.Rd                                 |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.to.mdes.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/mrss.to.power.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.bcra3f2.Rd                             |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.bcra3r2.Rd                             |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.bcra4f3.Rd                             |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.bcra4r2.Rd                             |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.bcra4r3.Rd                             |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.bira2c1.Rd                             |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.bira2f1.Rd                             |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.bira2r1.Rd                             |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.bira3r1.Rd                             |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.bira4r1.Rd                             |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.cra2r2.Rd                              |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.cra3r3.Rd                              |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.cra4r4.Rd                              |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.ira1r1.Rd                              |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.to.mdes.Rd                             |only
 PowerUpR-0.1.3/PowerUpR/man/optimal.to.power.Rd                            |only
 PowerUpR-0.1.3/PowerUpR/man/plot.pars.Rd                                   |only
 PowerUpR-0.1.3/PowerUpR/man/power.bcra3f2.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/power.bcra3r2.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/power.bcra4f3.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/power.bcra4r2.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/power.bcra4r3.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/power.bira2c1.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/power.bira2f1.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/power.bira2r1.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/power.bira3r1.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/power.bira4r1.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/power.cra2r2.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/power.cra3r3.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/power.cra4r4.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/power.ira1r1.Rd                                |only
 PowerUpR-0.1.3/PowerUpR/man/power.to.mdes.Rd                               |only
 PowerUpR-0.1.3/PowerUpR/man/t1t2.error.Rd                                  |only
 PowerUpR-0.1.3/PowerUpR/vignettes/vignettes.Rmd                            |only
 PowerUpR-0.2.3/PowerUpR/DESCRIPTION                                        |   27 
 PowerUpR-0.2.3/PowerUpR/MD5                                                |  145 +-
 PowerUpR-0.2.3/PowerUpR/NAMESPACE                                          |   45 
 PowerUpR-0.2.3/PowerUpR/NEWS.md                                            |   29 
 PowerUpR-0.2.3/PowerUpR/R/bcra3f2.R                                        |  463 +-------
 PowerUpR-0.2.3/PowerUpR/R/bcra3r2.R                                        |  475 +-------
 PowerUpR-0.2.3/PowerUpR/R/bcra4f3.R                                        |  515 +--------
 PowerUpR-0.2.3/PowerUpR/R/bcra4r2.R                                        |  530 +---------
 PowerUpR-0.2.3/PowerUpR/R/bcra4r3.R                                        |  526 +--------
 PowerUpR-0.2.3/PowerUpR/R/bira2c1.R                                        |  431 +-------
 PowerUpR-0.2.3/PowerUpR/R/bira2f1.R                                        |  434 +-------
 PowerUpR-0.2.3/PowerUpR/R/bira2r1.R                                        |  440 +-------
 PowerUpR-0.2.3/PowerUpR/R/bira3r1.R                                        |  476 +-------
 PowerUpR-0.2.3/PowerUpR/R/bira4r1.R                                        |  523 +--------
 PowerUpR-0.2.3/PowerUpR/R/conv.R                                           |only
 PowerUpR-0.2.3/PowerUpR/R/cra2r2.R                                         |  435 +-------
 PowerUpR-0.2.3/PowerUpR/R/cra3r3.R                                         |  479 +--------
 PowerUpR-0.2.3/PowerUpR/R/cra4r4.R                                         |  516 +--------
 PowerUpR-0.2.3/PowerUpR/R/depdef.R                                         |only
 PowerUpR-0.2.3/PowerUpR/R/error.R                                          |only
 PowerUpR-0.2.3/PowerUpR/R/ira1r1.R                                         |  390 +------
 PowerUpR-0.2.3/PowerUpR/R/plot.R                                           |only
 PowerUpR-0.2.3/PowerUpR/R/t1t2.R                                           |only
 PowerUpR-0.2.3/PowerUpR/R/utils.R                                          |only
 PowerUpR-0.2.3/PowerUpR/README.md                                          |   60 -
 PowerUpR-0.2.3/PowerUpR/build/vignette.rds                                 |binary
 PowerUpR-0.2.3/PowerUpR/inst/CITATION                                      |    8 
 PowerUpR-0.2.3/PowerUpR/inst/doc/cross_checks.R                            |only
 PowerUpR-0.2.3/PowerUpR/inst/doc/cross_checks.Rmd                          |only
 PowerUpR-0.2.3/PowerUpR/inst/doc/cross_checks.html                         |only
 PowerUpR-0.2.3/PowerUpR/inst/doc/three_level_cluster_randomized_trial.R    |only
 PowerUpR-0.2.3/PowerUpR/inst/doc/three_level_cluster_randomized_trial.Rmd  |only
 PowerUpR-0.2.3/PowerUpR/inst/doc/three_level_cluster_randomized_trial.html |only
 PowerUpR-0.2.3/PowerUpR/man/PowerUpR-deprecated.Rd                         |only
 PowerUpR-0.2.3/PowerUpR/man/PowerUpR-package.Rd                            |only
 PowerUpR-0.2.3/PowerUpR/man/bcra3f2.Rd                                     |only
 PowerUpR-0.2.3/PowerUpR/man/bcra3r2.Rd                                     |only
 PowerUpR-0.2.3/PowerUpR/man/bcra4f3.Rd                                     |only
 PowerUpR-0.2.3/PowerUpR/man/bcra4r2.Rd                                     |only
 PowerUpR-0.2.3/PowerUpR/man/bcra4r3.Rd                                     |only
 PowerUpR-0.2.3/PowerUpR/man/bira2c1.Rd                                     |only
 PowerUpR-0.2.3/PowerUpR/man/bira2f1.Rd                                     |only
 PowerUpR-0.2.3/PowerUpR/man/bira2r1.Rd                                     |only
 PowerUpR-0.2.3/PowerUpR/man/bira3r1.Rd                                     |only
 PowerUpR-0.2.3/PowerUpR/man/bira4r1.Rd                                     |only
 PowerUpR-0.2.3/PowerUpR/man/conv.Rd                                        |only
 PowerUpR-0.2.3/PowerUpR/man/cra2r2.Rd                                      |only
 PowerUpR-0.2.3/PowerUpR/man/cra3r3.Rd                                      |only
 PowerUpR-0.2.3/PowerUpR/man/cra4r4.Rd                                      |only
 PowerUpR-0.2.3/PowerUpR/man/ira1r1.Rd                                      |only
 PowerUpR-0.2.3/PowerUpR/man/plot.Rd                                        |only
 PowerUpR-0.2.3/PowerUpR/man/t1t2.Rd                                        |only
 PowerUpR-0.2.3/PowerUpR/vignettes/cross_checks.Rmd                         |only
 PowerUpR-0.2.3/PowerUpR/vignettes/three_level_cluster_randomized_trial.Rmd |only
 126 files changed, 1275 insertions(+), 5672 deletions(-)

More information about PowerUpR at CRAN
Permanent link

Package findR updated to version 0.2.0 with previous version 0.1.0 dated 2018-01-30

Title: Find Code Snippets, R Scripts, R Markdown, PDF and Text Files with Pattern Matching
Description: Scans all directories and subdirectories of a path for code snippets, R scripts, R Markdown, PDF or text files containing a specific pattern. Files found can be copied to a new folder.
Author: David Zumbach [aut, cre]
Maintainer: David Zumbach <david.zumbach@gfzb.ch>

Diff between findR versions 0.1.0 dated 2018-01-30 and 0.2.0 dated 2018-02-16

 DESCRIPTION              |   14 +++++++-------
 MD5                      |   14 ++++++++------
 NAMESPACE                |    1 +
 NEWS                     |   15 ++++++++++++---
 R/findPDF.R              |    6 +++---
 R/reminder.R             |only
 inst/testfiles/script1.R |   10 ++++++++++
 man/findPDF.Rd           |    2 +-
 man/reminder.Rd          |only
 9 files changed, 42 insertions(+), 20 deletions(-)

More information about findR at CRAN
Permanent link

Package NNS updated to version 0.3.8.3 with previous version 0.3.8.2 dated 2018-01-08

Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>

Diff between NNS versions 0.3.8.2 dated 2018-01-08 and 0.3.8.3 dated 2018-02-16

 DESCRIPTION                                          |   10 +-
 MD5                                                  |   36 ++++----
 NAMESPACE                                            |    1 
 R/Multivariate_Regression.R                          |   56 ++++++++++---
 R/Partial_Moments.R                                  |   13 +--
 R/Partition_Map.R                                    |    2 
 R/Regression.R                                       |   80 ++++++++++++++++---
 R/dy_d_wrt.R                                         |    8 -
 R/gvload.R                                           |    4 
 inst/doc/NNSvignette_Clustering_and_Regression.Rmd   |    2 
 inst/doc/NNSvignette_Clustering_and_Regression.html  |    8 +
 inst/doc/NNSvignette_Correlation_and_Dependence.R    |    4 
 inst/doc/NNSvignette_Correlation_and_Dependence.Rmd  |    9 +-
 inst/doc/NNSvignette_Correlation_and_Dependence.html |   10 +-
 inst/doc/NNSvignette_Partial_Moments.html            |   33 ++-----
 man/NNS.PDF.Rd                                       |   13 +--
 man/NNS.reg.Rd                                       |   14 ++-
 vignettes/NNSvignette_Clustering_and_Regression.Rmd  |    2 
 vignettes/NNSvignette_Correlation_and_Dependence.Rmd |    9 +-
 19 files changed, 212 insertions(+), 102 deletions(-)

More information about NNS at CRAN
Permanent link

Package MST updated to version 2.1 with previous version 2.0 dated 2017-04-15

Title: Multivariate Survival Trees
Description: Constructs trees for multivariate survival data using marginal and frailty models. Grows, prunes, and selects the best-sized tree.
Author: Xiaogang Su [aut], Peter Calhoun [aut, cre], Juanjuan Fan [aut]
Maintainer: Peter Calhoun <calhoun.peter@gmail.com>

Diff between MST versions 2.0 dated 2017-04-15 and 2.1 dated 2018-02-16

 DESCRIPTION        |    6 +++---
 MD5                |   13 +++++++------
 data/Teeth.rda     |binary
 inst/CITATION      |only
 inst/NEWS.Rd       |   10 +++++++++-
 man/MST-package.Rd |   24 +++++++++++++-----------
 man/MST.Rd         |   10 ++++++----
 man/rmultime.Rd    |    4 ++--
 8 files changed, 40 insertions(+), 27 deletions(-)

More information about MST at CRAN
Permanent link

Package largeVis updated to version 0.2.1.1 with previous version 0.2.1 dated 2017-05-08

Title: High-Quality Visualizations of Large, High-Dimensional Datasets
Description: Implements the largeVis algorithm (see Tang, et al. (2016) <DOI:10.1145/2872427.2883041>) for visualizing very large high-dimensional datasets. Also very fast search for approximate nearest neighbors; outlier detection; and optimized implementations of the HDBSCAN*, DBSCAN and OPTICS clustering algorithms; plotting functions for visualizing the above.
Author: Amos B. Elberg
Maintainer: ORPHANED

Diff between largeVis versions 0.2.1 dated 2017-05-08 and 0.2.1.1 dated 2018-02-16

 DESCRIPTION  |   13 +++++++++----
 MD5          |    4 ++--
 src/Makevars |    2 +-
 3 files changed, 12 insertions(+), 7 deletions(-)

More information about largeVis at CRAN
Permanent link

Package lfe updated to version 2.6-2291 with previous version 2.5-1998 dated 2016-04-18

Title: Linear Group Fixed Effects
Description: Transforms away factors with many levels prior to doing an OLS. Useful for estimating linear models with multiple group fixed effects, and for estimating linear models which uses factors with many levels as pure control variables. Includes support for instrumental variables, conditional F statistics for weak instruments, robust and multi-way clustered standard errors, as well as limited mobility bias correction.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure <Simen.Gaure@frisch.uio.no>

Diff between lfe versions 2.5-1998 dated 2016-04-18 and 2.6-2291 dated 2018-02-16

 lfe-2.5-1998/lfe/build/autoconf/aclocal.m4   |only
 lfe-2.5-1998/lfe/man/summary.Rd              |only
 lfe-2.6-2291/lfe/DESCRIPTION                 |   27 -
 lfe-2.6-2291/lfe/MD5                         |  129 ++---
 lfe-2.6-2291/lfe/NAMESPACE                   |    3 
 lfe-2.6-2291/lfe/R/bccorr.R                  |   16 
 lfe-2.6-2291/lfe/R/btrap.R                   |   21 
 lfe-2.6-2291/lfe/R/condfstat.R               |    4 
 lfe-2.6-2291/lfe/R/demeanlist.R              |   11 
 lfe-2.6-2291/lfe/R/felm.R                    |   57 +-
 lfe-2.6-2291/lfe/R/generics.R                |   72 ++
 lfe-2.6-2291/lfe/R/lfe-package.R             |    4 
 lfe-2.6-2291/lfe/R/nlexpect.R                |   83 ++-
 lfe-2.6-2291/lfe/R/startup.R                 |   38 -
 lfe-2.6-2291/lfe/R/utils.R                   |   18 
 lfe-2.6-2291/lfe/build/autoconf/config.guess |  233 ++-------
 lfe-2.6-2291/lfe/build/autoconf/config.sub   |   60 +-
 lfe-2.6-2291/lfe/build/autoconf/install-sh   |  362 ++++++--------
 lfe-2.6-2291/lfe/build/vignette.rds          |binary
 lfe-2.6-2291/lfe/configure                   |  661 ++-------------------------
 lfe-2.6-2291/lfe/configure.ac                |   22 
 lfe-2.6-2291/lfe/exec/lfescript              |   46 +
 lfe-2.6-2291/lfe/inst/CITATION               |    4 
 lfe-2.6-2291/lfe/inst/NEWS.Rd                |   10 
 lfe-2.6-2291/lfe/inst/doc/biascorrection.pdf |binary
 lfe-2.6-2291/lfe/inst/doc/identification.pdf |binary
 lfe-2.6-2291/lfe/inst/doc/lfeguide.txt       |    6 
 lfe-2.6-2291/lfe/inst/doc/lfehow.pdf         |binary
 lfe-2.6-2291/lfe/inst/doc/speed.R            |    2 
 lfe-2.6-2291/lfe/inst/doc/speed.Rnw          |    2 
 lfe-2.6-2291/lfe/inst/doc/speed.pdf          |binary
 lfe-2.6-2291/lfe/man/bccorr.Rd               |    1 
 lfe-2.6-2291/lfe/man/btrap.Rd                |    1 
 lfe-2.6-2291/lfe/man/cgsolve.Rd              |    1 
 lfe-2.6-2291/lfe/man/chainsubset.Rd          |    1 
 lfe-2.6-2291/lfe/man/compfactor.Rd           |    1 
 lfe-2.6-2291/lfe/man/condfstat.Rd            |    1 
 lfe-2.6-2291/lfe/man/demeanlist.Rd           |    3 
 lfe-2.6-2291/lfe/man/efactory.Rd             |    1 
 lfe-2.6-2291/lfe/man/felm.Rd                 |    3 
 lfe-2.6-2291/lfe/man/fevcov.Rd               |    1 
 lfe-2.6-2291/lfe/man/getfe.Rd                |    1 
 lfe-2.6-2291/lfe/man/is.estimable.Rd         |    1 
 lfe-2.6-2291/lfe/man/kaczmarz.Rd             |    1 
 lfe-2.6-2291/lfe/man/lfe-package.Rd          |    7 
 lfe-2.6-2291/lfe/man/makeDmatrix.Rd          |    1 
 lfe-2.6-2291/lfe/man/mctrace.Rd              |    1 
 lfe-2.6-2291/lfe/man/nlexpect.Rd             |   14 
 lfe-2.6-2291/lfe/man/sargan.Rd               |only
 lfe-2.6-2291/lfe/man/summary.felm.Rd         |only
 lfe-2.6-2291/lfe/man/varvars.Rd              |   15 
 lfe-2.6-2291/lfe/man/waldtest.Rd             |    1 
 lfe-2.6-2291/lfe/src/Crowsum.c               |    4 
 lfe-2.6-2291/lfe/src/config.h                |    4 
 lfe-2.6-2291/lfe/src/demean.c                |   10 
 lfe-2.6-2291/lfe/src/lfe.c                   |    5 
 lfe-2.6-2291/lfe/src/lfe.h                   |    3 
 lfe-2.6-2291/lfe/src/utils.c                 |   36 -
 lfe-2.6-2291/lfe/tests/Examples              |only
 lfe-2.6-2291/lfe/tests/anomalies.Rout.save   |   13 
 lfe-2.6-2291/lfe/tests/cluster.Rout.save     |   24 
 lfe-2.6-2291/lfe/tests/efcheck.Rout.save     |  220 ++++----
 lfe-2.6-2291/lfe/tests/lfetest.R             |    5 
 lfe-2.6-2291/lfe/tests/lfetest.Rout.save     |   41 +
 lfe-2.6-2291/lfe/tests/mlhs.Rout.save        |   61 +-
 lfe-2.6-2291/lfe/tests/multiway.Rout.save    |   30 -
 lfe-2.6-2291/lfe/tests/weights.Rout.save     |   18 
 lfe-2.6-2291/lfe/vignettes/speed.Rnw         |    2 
 68 files changed, 976 insertions(+), 1447 deletions(-)

More information about lfe at CRAN
Permanent link

Package nlme updated to version 3.1-131.1 with previous version 3.1-135.5 dated 2018-02-16

Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), R-core [aut, cre]
Maintainer: R-core <R-core@R-project.org>

Diff between nlme versions 3.1-135.5 dated 2018-02-16 and 3.1-131.1 dated 2018-02-16

 nlme |only
 1 file changed

More information about nlme at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.