Thu, 25 Aug 2016

Package rglwidget updated to version 0.2 with previous version 0.1.1434 dated 2015-12-28

Title: 'rgl' in 'htmlwidgets' Framework
Description: The contents of this package have been merged into rgl, so it is no longer needed.
Author: Duncan Murdoch
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>

Diff between rglwidget versions 0.1.1434 dated 2015-12-28 and 0.2 dated 2016-08-25

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Package rgl updated to version 0.96.0 with previous version 0.95.1441 dated 2016-01-04

Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including functions modelled on base graphics (plot3d(), etc.) as well as functions for constructing representations of geometric objects (cube3d(), etc.). Output may be on screen using OpenGL, or to various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch@stats.uwo.ca>, and others (see README)
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>

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Package ViSiElse updated to version 1.2.0 with previous version 1.0.1 dated 2016-03-07

Title: A Visual Tool for Behaviour Analysis
Description: A graphical tool designed to visualize and to give an overview of behavioural observations realized on individuals or groups. Visualization of raw data during experimental observations of the realization of a procedure. It graphically presents an overview of individuals and group actions usually acquired from timestamps during video recorded sessions. Options of the package allow adding graphical information as statistical indicators (mean, standard deviation, quantile or statistical test) but also for each action green or black zones providing visual information about the accuracy of the realized actions.
Author: Nastasia Fouret [aut, cre, cph], Mederic Descoins [aut, cph], CEPOI - EA 7388 [cph]
Maintainer: Nastasia Fouret <nastasia.fouret@chu-reunion.fr>

Diff between ViSiElse versions 1.0.1 dated 2016-03-07 and 1.2.0 dated 2016-08-25

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Package tensorBSS updated to version 0.2 with previous version 0.1 dated 2016-04-18

Title: Blind Source Separation Methods for Tensor-Valued Observations
Description: Contains several utility functions for manipulating tensor-valued data (centering, multiplication from a single mode etc.) and the implementations of the following blind source separation methods for tensor-valued data: 'tPCA', 'tFOBI', 'tJADE', 'tgFOBI', 'tgJADE' and 'tSOBI'.
Author: Joni Virta, Bing Li, Klaus Nordhausen, Hannu Oja
Maintainer: Joni Virta <jomivi@utu.fi>

Diff between tensorBSS versions 0.1 dated 2016-04-18 and 0.2 dated 2016-08-25

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Package nor1mix updated to version 1.2-2 with previous version 1.2-1 dated 2015-07-27

Title: Normal (1-d) Mixture Models (S3 Classes and Methods)
Description: Onedimensional Normal Mixture Models Classes, for, e.g., density estimation or clustering algorithms research and teaching; providing the widely used Marron-Wand densities. Now fitting to data by ML (Maximum Likelihood) or EM estimation.
Author: Martin Mächler
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>

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Package Mediana updated to version 1.0.3 with previous version 1.0.2 dated 2015-11-16

Title: Clinical Trial Simulations
Description: Provides a general framework for clinical trial simulations based on the Clinical Scenario Evaluation (CSE) approach. The package supports a broad class of data models (including clinical trials with continuous, binary, survival-type and count-type endpoints as well as multivariate outcomes that are based on combinations of different endpoints), analysis strategies and commonly used evaluation criteria.
Author: Gautier Paux, Alex Dmitrienko.
Maintainer: Gautier Paux <gautier@paux.fr>

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Package JMbayes updated to version 0.8-0 with previous version 0.7-9 dated 2016-03-25

Title: Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
Description: Shared parameter models for the joint modeling of longitudinal and time-to-event data using MCMC.
Author: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>

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Package hisse updated to version 1.8 with previous version 1.7 dated 2016-06-14

Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>

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Package elastic updated to version 0.7.6 with previous version 0.7.4 dated 2016-08-17

Title: General Purpose Interface to 'Elasticsearch'
Description: Connect to 'Elasticsearch', a 'NoSQL' database built on the 'Java' Virtual Machine. Interacts with the 'Elasticsearch' 'HTTP' 'API' (<https://www.elastic.co/products/elasticsearch>), including functions for setting connection details to 'Elasticsearch' instances, loading bulk data, searching for documents with both 'HTTP' query variables and 'JSON' based body requests. In addition, 'elastic' provides functions for interacting with 'APIs' for 'indices', documents, nodes, clusters, an interface to the cat 'API', and more.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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Package BANOVA updated to version 0.7 with previous version 0.6 dated 2016-08-01

Title: Hierarchical Bayesian ANOVA Models
Description: It covers several Bayesian Analysis of Variance (BANOVA) models used in analysis of experimental designs in which both within- and between- subjects factors are manipulated. They can be applied to data that are common in the behavioral sciences and related fields. The package includes: Hierarchical Bayes ANOVA models with normal response, t response, Binomial(Bernoulli) response, Poisson response, ordered multinomial response and multinomial response variables. All models accommodate unobserved heterogeneity by including a normal distribution of the parameters across individuals. Outputs of the package include tables of sums of squares, effect sizes and p-values, and tables of means, which are easily interpretable for behavioral researchers. BANOVA uses JAGS as the computational platform.
Author: Chen Dong, Michel Wedel
Maintainer: Chen Dong <cdong@math.umd.edu>

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Wed, 24 Aug 2016

Package stochvol updated to version 1.3.0 with previous version 1.2.3 dated 2016-02-18

Title: Efficient Bayesian Inference for Stochastic Volatility (SV) Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods.
Author: Gregor Kastner [aut, cre]
Maintainer: Gregor Kastner <gregor.kastner@wu.ac.at>

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Package accrued updated to version 1.4.1 with previous version 1.4 dated 2016-05-10

Title: Data Quality Visualization Tools for Partially Accruing Data
Description: Package for visualizing data quality of partially accruing data.
Author: Julie Eaton and Ian Painter
Maintainer: Julie Eaton <jreaton@uw.edu>

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Package timevis updated to version 0.2 with previous version 0.1 dated 2016-07-25

Title: Create Interactive Timeline Visualizations in R
Description: Create rich and fully interactive timeline visualizations. Timelines can be included in Shiny apps and R markdown documents, or viewed from the R console and RStudio Viewer. 'timevis' includes an extensive API to manipulate a timeline after creation, and supports getting data out of the visualization into R. Based on the 'vis.js' Timeline module and the 'htmlwidgets' R package.
Author: Dean Attali [aut, cre] (R interface), Almende B.V. [aut, cph] (vis.js library, http://visjs.org, http://www.almende.com/home)
Maintainer: Dean Attali <daattali@gmail.com>

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Package rnrfa updated to version 0.5.4 with previous version 0.5.3 dated 2016-05-12

Title: UK National River Flow Archive Data from R
Description: Utility functions to retrieve data from the UK National River Flow Archive. The package contains R wrappers to the UK NRFA data temporary-API. There are functions to retrieve stations falling in a bounding box, to generate a map and extracting time series and general information.
Author: Claudia Vitolo [aut, cre], Matthew Fry [ctb] (Matthew supervised the unofficial API integration.), Wouter Buytaert [ctb] (This package is part of Claudia Vitolo's PhD work and Wouter is the supervisor.), Michael Spencer [ctb] (Michael updated the function OSGparse to work with grid references of different lengths.)
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>

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Package RcmdrPlugin.lfstat updated to version 0.8.1 with previous version 0.7 dated 2013-12-18

Title: Rcmdr Plug-in for Low Flow Analysis
Description: Provides an Rcmdr "plug-in" based on the lfstat package for low flow analysis.
Author: Daniel Koffler and Gregor Laaha
Maintainer: Tobias Gauster <t.gauster@boku.ac.at>

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Package Rcmdr updated to version 2.3-0 with previous version 2.2-5 dated 2016-06-17

Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre], Milan Bouchet-Valat [aut], Liviu Andronic [ctb], Michael Ash [ctb], Theophilius Boye [ctb], Stefano Calza [ctb], Andy Chang [ctb], Philippe Grosjean [ctb], Richard Heiberger [ctb], Kosar Karimi Pour [ctb], G. Jay Kerns [ctb], Renaud Lancelot [ctb], Matthieu Lesnoff [ctb], Uwe Ligges [ctb], Samir Messad [ctb], Martin Maechler [ctb], Robert Muenchen [ctb], Duncan Murdoch [ctb], Erich Neuwirth [ctb], Dan Putler [ctb], Brian Ripley [ctb], Miroslav Ristic [ctb], Peter Wolf [ctb], Kevin Wright [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>

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Package pwr updated to version 1.2-0 with previous version 1.1-4 dated 2016-08-04

Title: Basic Functions for Power Analysis
Description: Power analysis functions along the lines of Cohen (1988).
Author: Stephane Champely [aut], Claus Ekstrom [ctb], Peter Dalgaard [ctb], Jeffrey Gill [ctb], Stephan Weibelzahl [ctb], Helios De Rosario [cre]
Maintainer: Helios De Rosario <helios.derosario@gmail.com>

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Package oglmx updated to version 2.0.0.1 with previous version 2.0.0.0 dated 2016-05-27

Title: Estimation of Ordered Generalized Linear Models
Description: Ordered models such as ordered probit and ordered logit presume that the error variance is constant across observations. In the case that this assumption does not hold estimates of marginal effects are typically biased. This package allows for generalization of ordered probit and ordered logit models by allowing the user to specify a model for the variance. Furthermore, the package includes functions to calculate the marginal effects. Wrapper functions to estimate the standard limited dependent variable models are also included.
Author: Nathan Carroll
Maintainer: Nathan Carroll <nathan.carroll@ur.de>

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Package mev updated to version 1.8.2 with previous version 1.6.1 dated 2016-03-15

Title: Multivariate Extreme Value Distributions
Description: Exact simulation from max-stable processes and multivariate extreme value distributions for various parametric models. Threshold selection methods.
Author: Leo Belzile [aut, cre], Jennifer L. Wadsworth [aut], Paul J. Northrop [aut], Scott D. Grimshaw [aut], Jin. Zhang [ctb], Michael A. Stephens [ctb], Art B. Owen [ctb], Anthony C. Davison [ctb], Raphael Huser [aut]
Maintainer: Leo Belzile <leo.belzile@epfl.ch>

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Package lfstat updated to version 0.9.4 with previous version 0.9.0 dated 2016-07-01

Title: Calculation of Low Flow Statistics for Daily Stream Flow Data
Description: The "Manual on Low-flow Estimation and Prediction", published by the World Meteorological Organisation (WMO), gives a comprehensive summary on how to analyse stream flow data focusing on low-flows. This packages provides functions to compute the described statistics and produces plots similar to the ones in the manual.
Author: Daniel Koffler, Tobias Gauster and Gregor Laaha
Maintainer: Tobias Gauster <t.gauster@boku.ac.at>

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Package LDheatmap updated to version 0.99-2 with previous version 0.99-1 dated 2013-09-21

Title: Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Description: Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.
Author: Ji-Hyung Shin <shin@sfu.ca>, Sigal Blay <sblay@sfu.ca>, Nicholas Lewin-Koh <nikko@hailmail.net>, Brad McNeney <mcneney@sfu.ca>, Jinko Graham <jgraham@sfu.ca>
Maintainer: Brad McNeney <mcneney@sfu.ca>

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Package funreg updated to version 1.2 with previous version 1.1 dated 2014-06-20

Title: Functional Regression for Irregularly Timed Data
Description: Performs functional regression, and some related approaches, for intensive longitudinal data (see the book by Walls & Schafer, 2006, Models for Intensive Longitudinal Data, Oxford) when such data is not necessarily observed on an equally spaced grid of times. The approach generally follows the ideas of Goldsmith, Bobb, Crainiceanu, Caffo, and Reich (2011)<DOI:10.1198/jcgs.2010.10007> and the approach taken in their sample code, but with some modifications to make it more feasible to use with long rather than wide, non-rectangular longitudinal datasets with unequal and potentially random measurement times. It also allows easy plotting of the correlation between the smoothed covariate and the outcome as a function of time, which can add additional insights on how to interpret a functional regression. Additionally, it also provides several permutation tests for the significance of the functional predictor. The heuristic interpretation of ``time'' is used to describe the index of the functional predictor, but the same methods can equally be used for another unidimensional continuous index, such as space along a north-south axis. The development of this package was part of a research project supported by Award R03 CA171809-01 from the National Cancer Institute and Award P50 DA010075 from the National Institute on Drug Abuse. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institute on Drug Abuse, the National Cancer Institute, or the National Institutes of Health.
Author: John Dziak [aut, cre], Mariya Shiyko [aut]
Maintainer: John Dziak <jjd264@psu.edu>

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Package edci updated to version 1.1-2 with previous version 1.1-1 dated 2016-06-02

Title: Edge Detection and Clustering in Images
Description: Detection of edge points in images based on the difference of two asymmetric M-kernel estimators. Linear and circular regression clustering based on redescending M-estimators. Detection of linear edges in images.
Author: Tim Garlipp <TimGarlipp@gmx.de>
Maintainer: Dominik Kirchhoff <dominik.kirchhoff@tu-dortmund.de>

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Package DiffusionRimp updated to version 0.1.2 with previous version 0.1.1 dated 2016-08-16

Title: Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines
Description: Tools for performing inference and analysis using a data-imputation scheme and the method of lines.
Author: Etienne A.D. Pienaar [aut, cre], Melvin M. Varughese [ctb]
Maintainer: Etienne A.D. Pienaar <etiennead@gmail.com>

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Package ChannelAttribution updated to version 1.9 with previous version 1.8 dated 2016-07-26

Title: Markov Model for the Online Multi-Channel Attribution Problem
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. It's called the online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identifying structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare
Maintainer: Davide Altomare <davide.altomare@gmail.com>

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Package dglm updated to version 1.8.3 with previous version 1.8.2 dated 2015-11-05

Title: Double Generalized Linear Models
Description: Model fitting and evaluation tools for double generalized linear models (DGLMs). This class of models uses one generalized linear model (GLM) to fit the specified response and a second GLM to fit the deviance of the first model.
Author: Peter K Dunn <pdunn2@usc.edu.au> and Gordon K Smyth
Maintainer: Robert Corty <robert_corty@med.unc.edu>

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Package arm updated to version 1.9-1 with previous version 1.8-6 dated 2015-07-11

Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing 'lm', 'glm', 'svy.glm', 'merMod' and 'polr' outputs.
Author: Andrew Gelman [aut], Yu-Sung Su [aut, cre], Masanao Yajima [ctb], Jennifer Hill [ctb], Maria Grazia Pittau [ctb], Jouni Kerman [ctb], Tian Zheng [ctb], Vicent Dorie [ctb]
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>

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Package FSAdata updated to version 0.3.4 with previous version 0.3.3 dated 2016-07-18

Title: Data to Support Fish Stock Assessment ('FSA') Package
Description: The datasets to support the Fish Stock Assessment ('FSA') package.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>

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Package FRAPO updated to version 0.4-0 with previous version 0.3-8 dated 2013-06-18

Title: Financial Risk Modelling and Portfolio Optimisation with R
Description: Accompanying package of the book 'Financial Risk Modelling and Portfolio Optimisation with R', second edition. The data sets used in the book are contained in this package.
Author: Bernhard Pfaff [aut, cre]
Maintainer: Bernhard Pfaff <bernhard@pfaffikus.de>

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Tue, 23 Aug 2016

Package toxboot updated to version 0.1.1 with previous version 0.1.0 dated 2016-08-12

Title: Bootstrap Methods for 'ToxCast' High Throughput Screening Data
Description: Provides methods to use bootstrapping to quantify uncertainty in fitting 'ToxCast' concentration response data. Data is stored in memory, written to file, or stored in 'MySQL' or 'MongoDB' databases.
Author: Eric D. Watt [aut, cre]
Maintainer: Eric D. Watt <eric@ericdwatt.com>

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Package MixSIAR updated to version 3.1.7 with previous version 3.1.6 dated 2016-06-25

Title: Bayesian Mixing Models in R
Description: Creates and runs Bayesian mixing models to analyze biotracer data (i.e. stable isotopes, fatty acids), which estimate the proportions of source (prey) contributions to a mixture (consumer). 'MixSIAR' is not one model, but a framework that allows a user to create a mixing model based on their data structure and research questions, via options for fixed/ random effects, source data types, priors, and error terms. 'MixSIAR' incorporates several years of advances since 'MixSIR' and 'SIAR', and includes both GUI (graphical user interface) and script versions.
Author: Brian Stock [cre, aut], Brice Semmens [aut], Eric Ward [ctb], Andrew Parnell [ctb], Andrew Jackson [ctb], Donald Phillips [ctb], Jon Moore [ctb], Stuart Bearhop [ctb], Richard Inger [ctb]
Maintainer: Brian Stock <b1stock@ucsd.edu>

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Package tm.plugin.europresse updated to version 1.4 with previous version 1.3 dated 2015-07-28

Title: Import Articles from 'Europresse' Using the 'tm' Text Mining Framework
Description: Provides a 'tm' Source to create corpora from articles exported from the 'Europresse' content provider as HTML files. It is able to read both text content and meta-data information (including source, date, title, author and pages).
Author: Milan Bouchet-Valat [aut, cre]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>

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Package splancs updated to version 2.01-39 with previous version 2.01-38 dated 2015-09-28

Title: Spatial and Space-Time Point Pattern Analysis
Description: The Splancs package was written as an enhancement to S-Plus for display and analysis of spatial point pattern data; it has been ported to R and is in "maintenance mode".
Author: Roger Bivand [cre], Barry Rowlingson [aut], Peter Diggle [aut], Giovanni Petris [ctb], Stephen Eglen [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

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Package bedr updated to version 1.0.3 with previous version 1.0.2 dated 2015-09-21

Title: Genomic Region Processing using Tools Such as BEDtools, BEDOPS and Tabix
Description: Genomic regions processing using open-source command line tools such as BEDtools, BEDOPS and Tabix. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.
Author: Daryl Waggott, Syed Haider, Emilie Lalonde, Clement Fung, Paul C. Boutros
Maintainer: Paul Boutros <Paul.Boutros@oicr.on.ca>

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Package move updated to version 2.1.0 with previous version 2.0.0 dated 2016-06-13

Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org' as well as tools to visualize and statistically analyze animal movement data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement ecology questions.
Author: Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>, Marco Smolla <marco.smolla@postgrad.manchester.ac.uk>
Maintainer: Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>

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Package LMest updated to version 2.3 with previous version 2.2 dated 2016-02-25

Title: Latent Markov Models with and without Covariates
Description: Fit certain versions of the Latent Markov model for longitudinal categorical data.
Author: Francesco Bartolucci, Silvia Pandolfi - University of Perugia (IT)
Maintainer: Francesco Bartolucci <bart@stat.unipg.it>

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Package FFTrees updated to version 1.1.4 with previous version 1.1.3 dated 2016-08-16

Title: Generate, Visualise, and Compare Fast and Frugal Decision Trees
Description: Contains several functions that allow you to create, visualise, and test Fast and Frugal Trees (FFTrees). FFTrees are very simple decision trees for classifying cases (i.e.; breast cancer patients) into one of two classes (e.g.; no cancer vs. true cancer) based on a small number of cues (e.g.; test results). FFTrees can be preferable to more complex algorithms (such as logistic regression) because they are easy to communicate and implement, and are robust against noisy data.
Author: Nathaniel Phillips [aut, cre]
Maintainer: Nathaniel Phillips <Nathaniel.D.Phillips.is@gmail.com>

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Package EPGLM updated to version 1.1.2 with previous version 1.1.1 dated 2016-01-09

Title: Gaussian Approximation of Bayesian Binary Regression Models
Description: The main functions compute the expectation propagation approximation of a Bayesian probit/logit models with Gaussian prior. More information can be found in Chopin and Ridgway (2015). More models and priors should follow.
Author: James Ridgway
Maintainer: James Ridgway <james.ridgway@ensae.fr>

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Package dlsem updated to version 1.3.0 with previous version 1.2.1 dated 2016-07-05

Title: Distributed-Lag Structural Equation Modelling with Second-Order Polynomial Lag Shapes
Description: Estimation and path analysis functionalities for structural equation models with second-order polynomial lag shapes.
Author: Alessandro Magrini
Maintainer: Alessandro Magrini <magrini@disia.unifi.it>

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Package detzrcr updated to version 0.1.1 with previous version 0.1.0 dated 2016-06-29

Title: Compare Detrital Zircon Suites
Description: Compare detrital zircon suites by uploading univariate, U-Pb age, or bivariate, U-Pb age and Lu-Hf data, in a shiny-based user-interface. Outputs publication quality figures using ggplot2, and tables of statistics currently in use in the detrital zircon geochronology community.
Author: Magnus Kristoffersen [aut, cre]
Maintainer: Magnus Kristoffersen <magnus.kristoffersen@geo.uio.no>

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Package bamdit updated to version 3.0.0 with previous version 2.0.1 dated 2015-08-11

Title: Bayesian Meta-Analysis of Diagnostic Test Data
Description: Functions for Bayesian meta-analysis of diagnostic test data which are based on a scale mixtures bivariate random-effects model.
Author: Pablo Emilio Verde [aut, cre]
Maintainer: Pablo Emilio Verde <pabloemilio.verde@hhu.de>

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Package rel updated to version 1.1.0 with previous version 1.0.0 dated 2016-07-31

Title: Reliability Coefficients
Description: Derives point estimates with confidence intervals for Bennett et als S, Cohen's kappa and weighted kappa, Gwet's AC1 and AC2, Krippendorff's alpha, and Scott's pi.
Author: Riccardo Lo Martire
Maintainer: Riccardo Lo Martire <lomartire@kth.se>

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Package GAS updated to version 0.1.2 with previous version 0.1.1 dated 2016-08-17

Title: Generalized Autoregressive Score Models
Description: Simulate, Estimate and Forecast using univariate and multivariate GAS models.
Author: Leopoldo Catania [aut,cre], Kris Boudt [ctb], David Ardia [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@uniroma2.it>

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Package ABCanalysis updated to version 1.1.2 with previous version 1.1.1 dated 2016-06-15

Title: Computed ABC Analysis
Description: For a given data set, the package provides a novel method of computing precise limits to acquire subsets which are easily interpreted. Closely related to the Lorenz curve, the ABC curve visualizes the data by graphically representing the cumulative distribution function. Based on an ABC analysis the algorithm calculates, with the help of the ABC curve, the optimal limits by exploiting the mathematical properties pertaining to distribution of analyzed items. The data containing positive values is divided into three disjoint subsets A, B and C, with subset A comprising very profitable values, i.e. largest data values ("the important few"), subset B comprising values where the yield equals to the effort required to obtain it, and the subset C comprising of non-profitable values, i.e., the smallest data sets ("the trivial many"). Package is based on "Computed ABC Analysis for rational Selection of most informative Variables in multivariate Data", PLoS One. Ultsch. A., Lotsch J. (2015) <DOI:10.1371/journal.pone.0129767>.
Author: Michael Thrun, Jorn Lotsch, Alfred Ultsch
Maintainer: Michael Thrun <mthrun@mathematik.uni-marburg.de>

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Package plantecophys updated to version 1.1-8 with previous version 1.1-3 dated 2016-07-05

Title: Modelling and Analysis of Leaf Gas Exchange Data
Description: Coupled leaf gas exchange model, A-Ci curve simulation and fitting, Ball-Berry stomatal conductance models, leaf energy balance using Penman-Monteith, Cowan-Farquhar optimization, humidity unit conversions.
Author: Remko Duursma [aut, cre]
Maintainer: Remko Duursma <remkoduursma@gmail.com>

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Package mixsmsn updated to version 1.1-2 with previous version 1.1-1 dated 2015-11-16

Title: Fitting Finite Mixture of Scale Mixture of Skew-Normal Distributions
Description: Functions to fit finite mixture of scale mixture of skew-normal (FM-SMSN) distributions.
Author: Marcos Prates [aut, cre, trl], Victor Lachos [aut], Celso Cabral [aut]
Maintainer: Marcos Prates <marcosop@est.ufmg.br>

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Package FSA updated to version 0.8.9 with previous version 0.8.8 dated 2016-07-18

Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods. Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>

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Mon, 22 Aug 2016

Package swfscMisc updated to version 1.2 with previous version 1.1 dated 2016-03-03

Title: Miscellaneous Functions for Southwest Fisheries Science Center
Description: Collection of conversion, analytical, geodesic, mapping, and plotting functions. Used to support packages and code written by researchers at the Southwest Fisheries Science Center of the National Oceanic and Atmospheric Administration.
Author: Eric Archer [aut, cre]
Maintainer: Eric Archer <eric.archer@noaa.gov>

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Package ISOpureR updated to version 1.0.21 with previous version 1.0.20 dated 2016-07-23

Title: Deconvolution of Tumour Profiles
Description: Deconvolution of mixed tumour profiles into normal and cancer for each patient, using the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires mixed tumour profiles and a set of unmatched "basis" normal profiles.
Author: Gerald Quon [aut], Catalina V Anghel [aut, trl], Syed Haider [aut], Francis Nguyen [aut], Amit G Deshwar [aut], Quaid D Morris [aut], Paul C Boutros [aut, cre]
Maintainer: Paul C Boutros <Paul.Boutros@oicr.on.ca>

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Package autoimage updated to version 0.3.1 with previous version 0.3.0 dated 2016-08-13

Title: Display Multiple Images with Scaled Colors
Description: Functions for displaying (multiple) images with scaled colors, possibly with projected coordinates and for an irregular grid.
Author: Joshua French
Maintainer: Joshua French <joshua.french@ucdenver.edu>

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Package timelineS updated to version 0.1.1 with previous version 0.1.0 dated 2016-08-16

Title: Timeline and Time Duration-Related Tools
Description: An easy tool for plotting annotated timelines, grouped timelines, and exploratory graphics (boxplot/histogram/density plot/scatter plot/line plot). Filter, summarize date data by duration and convert to calendar units.
Author: Dahee Lee [aut, cre], Dustin Tingley [aut]
Maintainer: Dahee Lee <dhlee99@gmail.com>

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Package sdcTable updated to version 0.21.6 with previous version 0.21.5 dated 2016-05-20

Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in tabular data such as primary and secondary cell suppression are covered in this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@statistik.gv.at>

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Package robCompositions updated to version 2.0.2 with previous version 2.0.0 dated 2016-02-08

Title: Robust Estimation for Compositional Data
Description: Methods for analysis of compositional data including robust methods, imputation, methods to replace rounded zeros, (robust) outlier detection for compositional data, (robust) principal component analysis for compositional data, (robust) factor analysis for compositional data, (robust) discriminant analysis for compositional data (Fisher rule), robust regression with compositional predictors and (robust) Anderson-Darling normality tests for compositional data as well as popular log-ratio transformations (addLR, cenLR, isomLR, and their inverse transformations). In addition, visualisation and diagnostic tools are implemented as well as high and low-level plot functions for the ternary diagram.
Author: Matthias Templ, Karel Hron, Peter Filzmoser
Maintainer: Matthias Templ <templ@tuwien.ac.at>

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Package PredictTestbench updated to version 1.1.1 with previous version 1.0.2 dated 2016-06-04

Title: Test Bench for Comparison of Data Prediction Models
Description: Provides a Testbench for comparison of prediction models. This package is inspired from 'imputeTestbench' package <https://cran.r-project.org/package=imputeTestbench>. It compares prediction models with reference to RMSE, MAE or MAPE parameters. It allows to add new proposed methods to test bench and to compare with other methods. The function 'prediction_append()' allows to add multiple numbers of methods to the existing methods available in test bench. One/two step ahead prediction is also possible in the testbench.
Author: Neeraj Bokde
Maintainer: Neeraj Bokde <neerajdhanraj@gmail.com>

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Package fdasrvf updated to version 1.6.2 with previous version 1.6.1 dated 2016-04-22

Title: Elastic Functional Data Analysis
Description: Functions to support functional data analysis using the square root velocity framework.
Author: J. Derek Tucker <jdtuck@sandia.gov>
Maintainer: J. Derek Tucker <jdtuck@sandia.gov>

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Sun, 21 Aug 2016

Package shinyjs updated to version 0.7 with previous version 0.6 dated 2016-04-25

Title: Perform Common JavaScript Operations in Shiny Apps using Plain R Code
Description: Perform common JavaScript operations in Shiny applications without having to know any JavaScript. Examples include: hiding an element, disabling an input, resetting an input back to its original value, delaying code execution by a few seconds, and many more useful functions.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>

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Package ph2bye updated to version 0.1.4 with previous version 0.1.3 dated 2016-08-09

Title: Phase II Clinical Trial Design Using Bayesian Methods
Description: Calculate the Bayesian posterior/predictive probability and determine the sample size and stopping boundaries for single-arm Phase II design.
Author: Yalin Zhu, Rui Qin
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>

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Package interplot updated to version 0.1.3 with previous version 0.1.2.1 dated 2016-03-24

Title: Plot the Effects of Variables in Interaction Terms
Description: Plots the conditional coefficients ("marginal effects") of variables included in multiplicative interaction terms.
Author: Frederick Solt [aut], Yue Hu [aut, cre], Brenton Kenkel [ctb]
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>

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Package OAIHarvester updated to version 0.2-1 with previous version 0.2-0 dated 2015-12-20

Title: Harvest Metadata Using OAI-PMH v2.0
Description: Harvest metadata using the Open Archives Initiative Protocol for Metadata Harvesting (OAI-PMH) version 2.0.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package iprior updated to version 0.6.2 with previous version 0.6.1 dated 2016-08-19

Title: Linear Regression using I-Priors
Description: Provides methods to perform and analyse I-prior regression models. Estimation is mainly done via an EM algorithm, but there is flexibility in using any optimiser.
Author: Haziq Jamil [aut, cre]
Maintainer: Haziq Jamil <haziq.jamil@gmail.com>

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Package irtDemo updated to version 0.1.2 with previous version 0.1.1 dated 2016-06-16

Title: Item Response Theory Demo Collection
Description: Includes a collection of shiny applications to demonstrate or to explore fundamental item response theory (IRT) concepts such as estimation, scoring, and multidimensional IRT models.
Author: Metin Bulus [aut,cre] Wes Bonifay [aut,cre]
Maintainer: Metin Bulus <bulusmetin@gmail.com>

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Package matchingMarkets updated to version 0.3-1 with previous version 0.2-1 dated 2016-01-30

Title: Analysis of Stable Matchings
Description: Implements structural estimators to correct for the sample selection bias from observed outcomes in matching markets. This includes one-sided matching of agents into groups as well as two-sided matching of students to schools. The package also contains algorithms to find stable matchings in the three most common matching problems: the stable roommates problem, the college admissions problem, and the house allocation problem.
Author: Thilo Klein
Maintainer: Thilo Klein <thilo@klein.uk>

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Package vows updated to version 0.5 with previous version 0.4 dated 2015-02-12

Title: Voxelwise Semiparametrics
Description: Parametric and semiparametric inference for massively parallel models, i.e., a large number of models with common design matrix, as often occurs with brain imaging data.
Author: Philip Reiss, Yin-Hsiu Chen, Lei Huang, Lan Huo, Ruixin Tan, and Rong Jiao
Maintainer: Philip Reiss <phil.reiss@nyumc.org>

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Package miniCRAN updated to version 0.2.7 with previous version 0.2.6 dated 2016-07-13

Title: Create a Mini Version of CRAN Containing Only Selected Packages
Description: Makes it possible to create an internally consistent repository consisting of selected packages from CRAN-like repositories. The user specifies a set of desired packages, and miniCRAN recursively reads the dependency tree for these packages, then downloads only this subset. The user can then install packages from this repository directly, rather than from CRAN. This is useful in production settings, e.g. server behind a firewall, or remote locations with slow broadband access.
Author: Revolution Analytics [aut], Andrie de Vries [aut, cre], Alex Chubaty [ctb]
Maintainer: Andrie de Vries <adevries@microsoft.com>

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Package AzureML updated to version 0.2.13 with previous version 0.2.12 dated 2016-07-13

Title: Interface with Azure Machine Learning Datasets, Experiments and Web Services
Description: Functions and datasets to support Azure Machine Learning. This allows you to interact with datasets, as well as publish and consume R functions as API services.
Author: Andrie de Vries [aut, cre], Microsoft Corporation [cph], Revolution Analytics [cph] (Code adapted from the foreach package)
Maintainer: Andrie de Vries <adevries@microsoft.com>

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Package MCMCpack updated to version 1.3-7 with previous version 1.3-6 dated 2016-04-15

Title: Markov Chain Monte Carlo (MCMC) Package
Description: Contains functions to perform Bayesian inference using posterior simulation for a number of statistical models. Most simulation is done in compiled C++ written in the Scythe Statistical Library Version 1.0.3. All models return coda mcmc objects that can then be summarized using the coda package. Some useful utility functions such as density functions, pseudo-random number generators for statistical distributions, a general purpose Metropolis sampling algorithm, and tools for visualization are provided.
Author: Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park
Maintainer: Jong Hee Park <jongheepark@snu.ac.kr>

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Package captr updated to version 0.2.0 with previous version 0.1.5 dated 2016-02-28

Title: Client for the Captricity API
Description: Get text from images of text using Captricity Optical Character Recognition (OCR) API. Captricity allows you to get text from handwritten forms --- think surveys --- and other structured paper documents. And it can output data in form a delimited file keeping field information intact. For more information, read https://shreddr.captricity.com/developer/overview/.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>

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Sat, 20 Aug 2016

Package RcppEigen updated to version 0.3.2.9.0 with previous version 0.3.2.8.1 dated 2016-03-01

Title: 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library
Description: R and 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library (currently version 3.2.9). Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Douglas Bates, Dirk Eddelbuettel, Romain Francois, and Yixuan Qiu; the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppEigen versions 0.3.2.8.1 dated 2016-03-01 and 0.3.2.9.0 dated 2016-08-20

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More information about RcppEigen at CRAN
Permanent link

Package stacomirtools updated to version 0.5.0 with previous version 0.3 dated 2013-01-07

Title: ODBC Connection Class for Package stacomiR
Description: S4 class wrappers for ODBC connection.
Author: Cedric Briand [aut, cre]
Maintainer: Cedric Briand <cedric.briand00@gmail.com>

Diff between stacomirtools versions 0.3 dated 2013-01-07 and 0.5.0 dated 2016-08-20

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Package Rquake updated to version 2.4-0 with previous version 2.3-1 dated 2015-04-27

Title: Seismic Hypocenter Determination
Description: Hypocenter estimation and analysis of seismic data collected continuously, or in trigger mode. The functions organize other functions from RSEIS and GEOmap to help researchers pick, locate, and store hypocenters for detailed seismic investigation.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>

Diff between Rquake versions 2.3-1 dated 2015-04-27 and 2.4-0 dated 2016-08-20

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Package ClustVarLV updated to version 1.5.0 with previous version 1.4.1 dated 2015-09-08

Title: Clustering of Variables Around Latent Variables
Description: Functions for the clustering of variables around Latent Variables. Each cluster of variables, which may be defined as a local or directional cluster, is associated with a latent variable. External variables measured on the same observations or/and additional information on the variables can be taken into account. A "noise" cluster or sparse latent variables can also de defined.
Author: Evelyne Vigneau [aut, cre], Mingkun Chen [ctb]
Maintainer: Evelyne Vigneau <evelyne.vigneau@oniris-nantes.fr>

Diff between ClustVarLV versions 1.4.1 dated 2015-09-08 and 1.5.0 dated 2016-08-20

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Permanent link

Package RSEIS updated to version 3.6-1 with previous version 3.5-2 dated 2015-11-09

Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>

Diff between RSEIS versions 3.5-2 dated 2015-11-09 and 3.6-1 dated 2016-08-20

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More information about RSEIS at CRAN
Permanent link

Package earth updated to version 4.4.5 with previous version 4.4.4 dated 2016-01-08

Title: Multivariate Adaptive Regression Splines
Description: Build regression models using the techniques in Friedman's papers "Fast MARS" and "Multivariate Adaptive Regression Splines". (The term "MARS" is trademarked and thus not used in the name of the package.)
Author: Stephen Milborrow. Derived from mda:mars by Trevor Hastie and Rob Tibshirani. Uses Alan Miller's Fortran utilities with Thomas Lumley's leaps wrapper.
Maintainer: Stephen Milborrow <milbo@sonic.net>

Diff between earth versions 4.4.4 dated 2016-01-08 and 4.4.5 dated 2016-08-20

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More information about earth at CRAN
Permanent link

Package VarfromPDB updated to version 2.1.9 with previous version 2.0.5 dated 2016-02-11

Title: Capture the Genes and Variants Related to a Genetic Disease from Public Databases and PubMed
Description: Captures and compiles the genes and variants related to a disease, a phenotype or a clinical feature based on the public databases including HPO (Human Phenotype Ontology, <http://human-phenotype-ontology.github.io/about.html>), Orphanet <http://www.orpha.net/consor/cgi-bin/index.php>, OMIM (Online Mendelian Inheritance in Man, <http://www.omim.org>), ClinVar <http://www.ncbi.nlm.nih.gov/clinvar>, and UniProt (Universal Protein Resource, <http://www.uniprot.org>) and PubMed abstracts. HPO provides a standardized vocabulary of phenotypic abnormalities encountered in human disease. HPO currently contains approximately 11,000 terms and over 115,000 annotations to hereditary diseases. Orphanet is the reference portal for information on rare diseases and orphan drugs, whose aim is to help improve the diagnosis, care and treatment of patients with rare diseases. OMIM is a continuously updated catalog of human genes and genetic disorders and traits, with particular focus on the molecular relationship between genetic variation and phenotypic expression. ClinVar is a freely accessible, public archive of reports of the relationships among human variations and phenotypes, with supporting evidence. UniProt focuses on amino acid altering variants imported from Ensembl Variation databases. For Homo sapiens, the variants including human polymorphisms and disease mutations in the UniProt are manually curated from UniProtKB/Swiss-Prot. Additionally, PubMed provides the primary and latest source of the information. Text mining was employed to capture the information from PubMed abstracts.
Author: Zongfu Cao
Maintainer: Zongfu Cao <caozongfu@gmail.com>

Diff between VarfromPDB versions 2.0.5 dated 2016-02-11 and 2.1.9 dated 2016-08-20

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More information about VarfromPDB at CRAN
Permanent link

Package RVAideMemoire updated to version 0.9-60 with previous version 0.9-57 dated 2016-07-14

Title: Diverse Basic Statistical and Graphical Functions
Description: Contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé <mx.herve@gmail.com>

Diff between RVAideMemoire versions 0.9-57 dated 2016-07-14 and 0.9-60 dated 2016-08-20

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Package NMI updated to version 2.0 with previous version 1.0 dated 2016-08-19

Title: Normalized Mutual Information of Community Structure in Network
Description: Calculates the normalized mutual information (NMI) of two community structures in network analysis.
Author: Tianhao Wu [aut, cre]
Maintainer: Tianhao Wu <tianhao.wu@yale.edu>

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Package censReg updated to version 0.5-22 with previous version 0.5-20 dated 2013-08-20

Title: Censored Regression (Tobit) Models
Description: Estimation of censored regression (Tobit) models with cross-section and panel data.
Author: Arne Henningsen <arne.henningsen@gmail.com>
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>

Diff between censReg versions 0.5-20 dated 2013-08-20 and 0.5-22 dated 2016-08-20

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Package aemo updated to version 0.2.0 with previous version 0.1.0 dated 2014-06-21

Title: Download and Process AEMO Price and Demand Data
Description: Download and process real time trading prices and demand data freely provided by the Australian Energy Market Operator (AEMO). Note that this includes a sample data set.
Author: Imanuel Costigan [aut, cre], Australian Energy Market Operator [cph]
Maintainer: Imanuel Costigan <i.costigan@me.com>

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Package mgcv updated to version 1.8-14 with previous version 1.8-13 dated 2016-07-21

Title: Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness Estimation
Description: GAMs, GAMMs and other generalized ridge regression with multiple smoothing parameter estimation by GCV, REML or UBRE/AIC. Includes a gam() function, a wide variety of smoothers, JAGS support and distributions beyond the exponential family.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>

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Package Rborist updated to version 0.1-3 with previous version 0.1-2 dated 2016-08-17

Title: Extensible, Parallelizable Implementation of the Random Forest Algorithm
Description: Scalable decision tree training and prediction.
Author: Mark Seligman
Maintainer: Mark Seligman <mseligman@suiji.org>

Diff between Rborist versions 0.1-2 dated 2016-08-17 and 0.1-3 dated 2016-08-20

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Package pch updated to version 1.2 with previous version 1.1 dated 2016-02-18

Title: Piecewise Constant Hazards Models for Censored and Truncated Data
Description: Using piecewise constant hazards models is a very flexible approach for the analysis of survival data. The time line is divided into sub-intervals; for each interval, a different hazard is estimated using Poisson regression.
Author: Paolo Frumento
Maintainer: Paolo Frumento <paolo.frumento@ki.se>

Diff between pch versions 1.1 dated 2016-02-18 and 1.2 dated 2016-08-20

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Package ggghost updated to version 0.2.1 with previous version 0.2.0 dated 2016-08-18

Title: Capture the Spirit of Your 'ggplot2' Calls
Description: Creates a reproducible 'ggplot2' object by storing the data and calls.
Author: Jonathan Carroll [aut, cre]
Maintainer: Jonathan Carroll <rpkg@jcarroll.com.au>

Diff between ggghost versions 0.2.0 dated 2016-08-18 and 0.2.1 dated 2016-08-20

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Package datastepr updated to version 0.0.2 with previous version 0.0.1 dated 2015-06-06

Title: An Implementation of a SAS-Style Data Step
Description: Based on a SAS data step. This allows for row-wise dynamic building of data, iteratively importing slices of existing dataframes, conducting analyses, and exporting to a results frame. This is particularly useful for differential or time-series analyses, which are often not well suited to vector- based operations.
Author: Brandon Taylor
Maintainer: Brandon Taylor <brandon.taylor221@gmail.com>

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Package boxoffice updated to version 0.1.1 with previous version 0.1.0 dated 2016-08-03

Title: Downloads Box Office Information for Given Dates (How Much Each Movie Earned in Theaters)
Description: Download daily box office information (how much each movie earned in theaters) using data from either Box Office Mojo (<http://www.boxofficemojo.com/>) or The Numbers (<http://www.the-numbers.com/>).
Author: Jacob Kaplan [aut, cre]
Maintainer: Jacob Kaplan <jacobkap@sas.upenn.edu>

Diff between boxoffice versions 0.1.0 dated 2016-08-03 and 0.1.1 dated 2016-08-20

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Package BayesPiecewiseICAR updated to version 0.2.0 with previous version 0.1.1 dated 2016-07-29

Title: Hierarchical Bayesian Model for a Hazard Function
Description: Fits a piecewise exponential hazard to survival data using a Hierarchical Bayesian model with an Intrinsic Conditional Autoregressive formulation for the spatial dependency in the hazard rates for each piece. This function uses Metropolis- Hastings-Green MCMC to allow the number of split points to vary. This function outputs graphics that display the histogram of the number of split points and the trace plots of the hierarchical parameters. The function outputs a list that contains the posterior samples for the number of split points, the location of the split points, and the log hazard rates corresponding to these splits. Additionally, this outputs the posterior samples of the two hierarchical parameters, Mu and Sigma^2.
Author: person("Andrew", "Chapple", email = "Andrew.G.Chapple@rice.edu", role = c("aut", "cre"))
Maintainer: Andrew Chapple <Andrew.G.Chapple@rice.edu>

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Fri, 19 Aug 2016

Package spsurvey updated to version 3.3 with previous version 3.2 dated 2016-08-16

Title: Spatial Survey Design and Analysis
Description: This group of functions implements algorithms for design and analysis of probability surveys. The functions are tailored for Generalized Random Tessellation Stratified survey designs.
Author: Tom Kincaid [aut, cre], Tony Olsen [aut], Don Stevens [ctb], Christian Platt [ctb], Denis White [ctb], Richard Remington [ctb]
Maintainer: Tom Kincaid <Kincaid.Tom@epa.gov>

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Package sbtools updated to version 1.1.3 with previous version 1.0.2 dated 2016-06-23

Title: USGS ScienceBase Tools
Description: Tools for interacting with U.S. Geological Survey ScienceBase <https://www.sciencebase.gov> interfaces. ScienceBase is a data cataloging and collaborative data management platform. Functions included for querying ScienceBase, and creating and fetching datasets.
Author: Luke Winslow [aut, cre], Scott Chamberlain [aut], Alison Appling [aut], Jordan Read [aut]
Maintainer: Luke Winslow <lwinslow@usgs.gov>

Diff between sbtools versions 1.0.2 dated 2016-06-23 and 1.1.3 dated 2016-08-19

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Package RQuantLib updated to version 0.4.3 with previous version 0.4.2 dated 2015-12-03

Title: R Interface to the 'QuantLib' Library
Description: The 'RQuantLib' package makes parts of 'QuantLib' accessible from R The 'QuantLib' project aims to provide a comprehensive software framework for quantitative finance. The goal is to provide a standard open source library for quantitative analysis, modeling, trading, and risk management of financial assets.
Author: Dirk Eddelbuettel, Khanh Nguyen (during 2009-2010), Terry Leitch (2016)
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RQuantLib versions 0.4.2 dated 2015-12-03 and 0.4.3 dated 2016-08-19

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Package neotoma updated to version 1.6.1 with previous version 1.6.0 dated 2016-07-27

Title: Access to the Neotoma Paleoecological Database Through R
Description: Access paleoecological datasets from the Neotoma Paleoecological Database using the published API (http://api.neotomadb.org/). The functions in this package access various pre-built API functions and attempt to return the results from Neotoma in a usable format for researchers and the public.
Author: Simon J. Goring [aut, cre], Gavin L. Simpson [aut], Jeremiah P. Marsicek [ctb], Karthik Ram [aut], Luke Sosalla [ctb]
Maintainer: Simon J. Goring <goring@wisc.edu>

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Package SwarmSVM updated to version 0.1-2 with previous version 0.1 dated 2015-07-15

Title: Ensemble Learning Algorithms Based on Support Vector Machines
Description: Three ensemble learning algorithms based on support vector machines. They all train support vector machines on subset of data and combine the result.
Author: Tong He <hetong007@gmail.com>, Aydin Demircioglu <aydin.demircioglu@ini.ruhr-uni-bochum.de>
Maintainer: Tong He <hetong007@gmail.com>

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Package stringr updated to version 1.1.0 with previous version 1.0.0 dated 2015-04-30

Title: Simple, Consistent Wrappers for Common String Operations
Description: A consistent, simple and easy to use set of wrappers around the fantastic 'stringi' package. All function and argument names (and positions) are consistent, all functions deal with "NA"'s and zero length vectors in the same way, and the output from one function is easy to feed into the input of another.
Author: Hadley Wickham [aut, cre, cph], RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package R6 updated to version 2.1.3 with previous version 2.1.2 dated 2016-01-25

Title: Classes with Reference Semantics
Description: The R6 package allows the creation of classes with reference semantics, similar to R's built-in reference classes. Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. These classes allow public and private members, and they support inheritance, even when the classes are defined in different packages.
Author: Winston Chang [aut, cre]
Maintainer: Winston Chang <winston@stdout.org>

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Package PSF updated to version 0.3 with previous version 0.2.1 dated 2016-06-18

Title: Forecasting of Univariate Time Series Using the Pattern Sequence-Based Forecasting (PSF) Algorithm
Description: Pattern Sequence Based Forecasting (PSF) takes univariate time series data as input and assist to forecast its future values. This algorithm forecasts the behavior of time series based on similarity of pattern sequences. Initially, clustering is done with the labeling of samples from database. The labels associated with samples are then used for forecasting the future behaviour of time series data. The further technical details and references regarding PSF are discussed in Vignette.
Author: Neeraj Bokde, Gualberto Asencio-Cortes and Francisco Martinez-Alvarez
Maintainer: Neeraj Bokde <neerajdhanraj@gmail.com>

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Package CDF.PSIdekick updated to version 1.2 with previous version 1.1 dated 2016-08-18

Title: Evaluate Differentially Private Algorithms for Publishing Cumulative Distribution Functions
Description: Designed by and for the community of differential privacy algorithm developers. It can be used to empirically evaluate and visualize Cumulative Distribution Functions incorporating noise that satisfies differential privacy, with numerous options made to streamline collection of utility measurements across variations of key parameters, such as epsilon, domain size, sample size, data shape, etc. Developed by researchers at Harvard PSI.
Author: Daniel Muise [aut,cre], Kobbi Nissim [aut], Georgios Kellaris [aut]
Maintainer: Daniel Muise <dmuise@stanford.edu>

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Package BGLR updated to version 1.0.5 with previous version 1.0.4 dated 2015-04-07

Title: Bayesian Generalized Linear Regression
Description: Bayesian Generalized Linear Regression.
Author: Gustavo de los Campos, Paulino Perez Rodriguez,
Maintainer: Paulino Perez Rodriguez <perpdgo@colpos.mx>

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Package sdcMicro updated to version 4.6.1 with previous version 4.6.0 dated 2015-10-01

Title: Statistical Disclosure Control Methods for Anonymization of Microdata and Risk Estimation
Description: Data from statistical agencies and other institutions are mostly confidential. This package can be used for the generation of anonymized (micro)data, i.e. for the creation of public- and scientific-use files. In addition, various risk estimation methods are included. Note that the package 'sdcMicroGUI' includes a graphical user interface for various methods in this package.
Author: Matthias Templ, Alexander Kowarik, Bernhard Meindl
Maintainer: Matthias Templ <matthias.templ@gmail.com>

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Package protolite updated to version 1.4 with previous version 1.3 dated 2016-07-06

Title: Fast and Simple Object Serialization to Protocol Buffers
Description: Optimized C++ implementations for reading and writing protocol-buffers. Currently supports 'rexp.proto' for serializing R objects and 'geobuf.proto' for geojson data. This lightweight package is complementary to the much larger 'RProtoBuf' package which provides a full featured toolkit for working with protocol-buffers in R.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

Diff between protolite versions 1.3 dated 2016-07-06 and 1.4 dated 2016-08-19

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Package magick updated to version 0.2.2 with previous version 0.2.1 dated 2016-08-10

Title: Advanced Image-Processing in R
Description: Bindings to ImageMagick: the most comprehensive open-source image processing library available. Supports many common formats (png, jpeg, tiff, pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc). All operations are vectorized via the Magick++ STL meaning they operate either on a single frame or a series of frames for working with layers, collages, or animation. In RStudio images are automatically previewed when printed to the console, resulting in an interactive editing environment.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

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Package iLaplace updated to version 1.1.0 with previous version 1.0.0 dated 2015-09-28

Title: Improved Laplace Approximation for Integrals of Unimodal Functions
Description: Improved Laplace approximation for integrals of unimodal functions. The method requires user-supplied R functions for: the integrand, its gradient and its Hessian matrix. The computations are run in parallel.
Author: Erlis Ruli [aut, cre], Nicola Sartori [aut], Laura Ventura [aut]
Maintainer: Erlis Ruli <erlisr@yahoo.it>

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Package glamlasso updated to version 2.0.1 with previous version 2.0 dated 2016-08-03

Title: Penalization in Large Scale Generalized Linear Array Models
Description: Efficient design matrix free procedure for penalized estimation in large scale 2 and 3-dimensional generalized linear array models. Currently either Lasso or SCAD penalized estimation is possible for the followings models: The Gaussian model with identity link, the Binomial model with logit link, the Poisson model with log link and the Gamma model with log link.
Author: Adam Lund
Maintainer: Adam Lund <adam.lund@math.ku.dk>

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 src/auxfunc.h             |    2 -
 src/rcppfunc.cpp          |    7 +--
 11 files changed, 100 insertions(+), 93 deletions(-)

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