Title: Boruta -- a tool for finding significant attributes in
information systems
Diff between Boruta versions 1.2 dated 2010-05-08 and 1.3 dated 2010-09-02
More information about Boruta at CRAN
Description: Boruta is a feature selection algorithm based on a
randomForest predictor. It selects the full set of all
important attributes by comparing original attributes
importance with datum importance of their randomised copies.
Author: Algorithm by Witold R. Rudnicki
Maintainer: Miron B. Kursa
DESCRIPTION | 8 ++++----
R/Boruta.R | 16 ++++++++--------
inst/CITATION |only
inst/NEWS | 6 +++++-
man/Boruta.Rd | 6 +++++-
5 files changed, 22 insertions(+), 14 deletions(-)
Path: /cran/updated | permanent link
Title: Supervised Clustering of Predictor Variables such as Genes
Diff between supclust versions 1.0-5 dated 2005-05-18 and 1.0-6 dated 2010-09-02
More information about supclust at CRAN
Description: Methodology for supervised grouping aka "clustering" of
potentially many predictor variables, such as genes etc.
Author: Marcel Dettling
Maintainer: Martin Maechler
DESCRIPTION | 25 +++--
R/pelora-utils.R | 15 +--
R/pelora.R | 159 +++++++++++++++---------------------
man/coef.pelora.Rd | 17 ---
man/dlda.Rd | 17 ++-
man/fitted.pelora.Rd | 18 +---
man/fitted.wilma.Rd | 15 ---
man/margin.Rd | 2
man/pelora.Rd | 8 -
man/plot.pelora.Rd | 16 ---
man/plot.wilma.Rd | 25 +----
man/predict.pelora.Rd | 20 +---
man/predict.wilma.Rd | 24 ++---
man/print.pelora.Rd | 21 +---
man/print.wilma.Rd | 13 --
man/score.Rd | 2
man/sign.change.Rd | 2
man/signflip.Rd | 2
man/standardize.genes.Rd | 2
man/summary.pelora.Rd | 16 ---
man/summary.wilma.Rd | 13 --
man/wilma.Rd | 4
src/pelora.c | 6 -
src/wilma.c | 8 -
tests/pelora-ex.Rout.save | 138 +++++++++++++++----------------
tests/wilma-ex.Rout.save | 202 +++++-----------------------------------------
26 files changed, 268 insertions(+), 522 deletions(-)
Path: /cran/updated | permanent link
Title: Functions for soil texture plot, classification and
transformation
Diff between soiltexture versions 1.0 dated 2010-08-18 and 1.01 dated 2010-09-02
More information about soiltexture at CRAN
Description: "The Soil Texture Wizard" is a set of R functions designed
to produce texture triangles (also called texture plots,
texture diagrams, texture ternary plots), classify and
transform soil textures data. These functions virtually allows
to plot any soil texture triangle / classification into any
triangle geometry (isosceles, right-angled triangles, etc.).
This set of function is expected to be useful to people using
soil textures data from different soil texture classification
or different particle size systems. Several texture triangles
are predefined: USDA; FAO (which is also the triangle for the
soil map of Europe); Aisne (France); GEPPA (France); German
triangle (Bodenkundliche Kartieranleitung 1994); Soil Survey of
England and Wales (UK); Australian triangle; Belgian triangle;
Canadian triangle; ISSS triangle; Romanian traingle. The Soil
Texture Wizard is initially develloped from the functions
'soil.texture()' from the package 'plotrix' by Jim Lemon et al.
Author: Julien MOEYS
Maintainer: Julien MOEYS
soiltexture-1.0/soiltexture/inst/doc2 |only
soiltexture-1.01/soiltexture/DESCRIPTION | 13 -
soiltexture-1.01/soiltexture/R/soiltexture.R | 129 +++++-----
soiltexture-1.01/soiltexture/inst/doc/CC-By-SA-nonported-88x31.PNG |only
soiltexture-1.01/soiltexture/inst/doc/Sweave.sty |only
soiltexture-1.01/soiltexture/inst/doc/TT.env.Rd |only
soiltexture-1.01/soiltexture/inst/doc/julienmoeysmailaddress-322-24.png |only
soiltexture-1.01/soiltexture/inst/doc/julienmoeysmailaddress-382-25.png |only
soiltexture-1.01/soiltexture/inst/doc/soiltexture_vignette.R |only
soiltexture-1.01/soiltexture/inst/doc/soiltexture_vignette.Rnw |only
soiltexture-1.01/soiltexture/inst/doc/soiltexture_vignette.bib |only
soiltexture-1.01/soiltexture/inst/doc/soiltexture_vignette.pdf |binary
soiltexture-1.01/soiltexture/inst/doc/transformations.R |only
soiltexture-1.01/soiltexture/inst/doc/transformations.Rnw |only
soiltexture-1.01/soiltexture/inst/doc/transformations.pdf |only
soiltexture-1.01/soiltexture/inst/doc/version.txt |only
soiltexture-1.01/soiltexture/man/TT.text.transf.Xm.Rd | 20 -
soiltexture-1.01/soiltexture/man/soiltexture-package.Rd | 4
18 files changed, 89 insertions(+), 77 deletions(-)
Path: /cran/updated | permanent link
Title: Statistical Catch-at-Age Plotting Environment
Diff between scape versions 1.1-2 dated 2010-09-01 and 1.1-4 dated 2010-09-02
More information about scape at CRAN
Description: Import and plot results from statistical catch-at-age
models, used in fisheries stock assessments.
Author: Arni Magnusson
Maintainer: Arni Magnusson
DESCRIPTION | 8 ++++----
NEWS | 4 ++--
data/x.cod.R | 2 +-
data/x.ling.R | 2 +-
data/x.oreo.R | 2 +-
data/x.sbw.R | 2 +-
inst/doc/Rplots.pdf | 4 ++--
inst/doc/dsc-vignette.pdf |binary
inst/doc/gallery.pdf |binary
inst/doc/mymodel.pdf |binary
man/plotB.Rd | 8 ++------
man/plotCA.Rd | 10 +++-------
man/plotCL.Rd | 8 ++------
man/plotIndex.Rd | 8 ++------
man/plotLA.Rd | 8 ++------
man/plotN.Rd | 8 ++------
man/plotSel.Rd | 6 +-----
17 files changed, 26 insertions(+), 54 deletions(-)
Path: /cran/updated | permanent link
Title: Interface between R and GGobi
Diff between rggobi versions 2.1.14 dated 2009-05-10 and 2.1.16 dated 2010-09-02
More information about rggobi at CRAN
Description: The rggobi package provides a command-line interface to
GGobi, an interactive and dynamic graphics package. Rggobi
complements GGobi's graphical user interface, providing a way
to fluidly transition between analysis and exploration, as well
as automating common tasks.
Author: Duncan Temple Lang
Maintainer: Hadley Wickham
rggobi-2.1.14/rggobi/man/as-data-frame-GGobiData-10.rd |only
rggobi-2.1.14/rggobi/man/check-versions-qe.rd |only
rggobi-2.1.14/rggobi/man/close-GGobi-jj.rd |only
rggobi-2.1.14/rggobi/man/close-GGobiDisplay-3v.rd |only
rggobi-2.1.14/rggobi/man/connecting-edges-cn.rd |only
rggobi-2.1.14/rggobi/man/dataset-GGobiDisplay-f1.rd |only
rggobi-2.1.14/rggobi/man/dataset-numeric-h2.rd |only
rggobi-2.1.14/rggobi/man/dataset-up.rd |only
rggobi-2.1.14/rggobi/man/dim-GGobiData-9t.rd |only
rggobi-2.1.14/rggobi/man/dimnames-GGobiData-ib.rd |only
rggobi-2.1.14/rggobi/man/display-GGobiData-iu.rd |only
rggobi-2.1.14/rggobi/man/displays-GGobi-4v.rd |only
rggobi-2.1.14/rggobi/man/edges---GGobi-b7.rd |only
rggobi-2.1.14/rggobi/man/edges---GGobiData-3u.rd |only
rggobi-2.1.14/rggobi/man/excluded-54.rd |only
rggobi-2.1.14/rggobi/man/excluded-GGobiData-5p.rd |only
rggobi-2.1.14/rggobi/man/ggobi-GGobiDisplay-zb.rd |only
rggobi-2.1.14/rggobi/man/ggobi-count-bo.rd |only
rggobi-2.1.14/rggobi/man/ggobi-data-add-variable-o9.rd |only
rggobi-2.1.14/rggobi/man/ggobi-data-remove-variable-36.rd |only
rggobi-2.1.14/rggobi/man/ggobi-display-get-tour-projection-ih.rd |only
rggobi-2.1.14/rggobi/man/ggobi-gtk-main-window-c4.rd |only
rggobi-2.1.14/rggobi/man/ggobi-set-data-frame-k0.rd |only
rggobi-2.1.14/rggobi/man/ggobi-symbol-34.rd |only
rggobi-2.1.14/rggobi/man/glyph-colour-GGobiData-fz.rd |only
rggobi-2.1.14/rggobi/man/glyph-size---GGobiData-c8.rd |only
rggobi-2.1.14/rggobi/man/glyph-type---GGobiData-2r.rd |only
rggobi-2.1.14/rggobi/man/glyph-type-GGobiData-2i.rd |only
rggobi-2.1.14/rggobi/man/ids-GGobiData-2v.rd |only
rggobi-2.1.14/rggobi/man/length-GGobiDisplay-a1.rd |only
rggobi-2.1.14/rggobi/man/mapGlyphType-5p.rd |only
rggobi-2.1.14/rggobi/man/names---GGobiData-ga.rd |only
rggobi-2.1.14/rggobi/man/names-GGobi-ol.rd |only
rggobi-2.1.14/rggobi/man/ncol-GGobiData-fi.rd |only
rggobi-2.1.14/rggobi/man/pmode-la.rd |only
rggobi-2.1.14/rggobi/man/print-GGobi-b6.rd |only
rggobi-2.1.14/rggobi/man/print-GGobiData-7s.rd |only
rggobi-2.1.14/rggobi/man/rownames---GGobiData-2d.rd |only
rggobi-2.1.14/rggobi/man/rownames-GGobiData-n8.rd |only
rggobi-2.1.14/rggobi/man/shadowed-GGobiData-8a.rd |only
rggobi-2.1.14/rggobi/man/summary-GGobiData-wb.rd |only
rggobi-2.1.14/rggobi/man/valid-ggobi-mk.rd |only
rggobi-2.1.14/rggobi/man/variables--hh.rd |only
rggobi-2.1.14/rggobi/man/variables-GGobiDisplay-zm.rd |only
rggobi-2.1.14/rggobi/man/variables-cf.rd |only
rggobi-2.1.16/rggobi/DESCRIPTION | 11 ++++------
rggobi-2.1.16/rggobi/R/data.r | 2 +
rggobi-2.1.16/rggobi/R/datasets.r | 6 +++--
rggobi-2.1.16/rggobi/R/display-tour.r | 5 ++--
rggobi-2.1.16/rggobi/R/display-variables.r | 3 +-
rggobi-2.1.16/rggobi/R/display.r | 1
rggobi-2.1.16/rggobi/R/edges.r | 2 +
rggobi-2.1.16/rggobi/R/ggobi.r | 5 +++-
rggobi-2.1.16/rggobi/aclocal.m4 | 4 +--
rggobi-2.1.16/rggobi/man/GGobiCall-n1.rd | 2 -
rggobi-2.1.16/rggobi/man/as-RGtkObject-8g.rd | 4 +--
rggobi-2.1.16/rggobi/man/as-data-frame-GGobiData-i6.rd |only
rggobi-2.1.16/rggobi/man/check-versions-xs.rd |only
rggobi-2.1.16/rggobi/man/clean-ggobi-bw.rd | 2 -
rggobi-2.1.16/rggobi/man/close-GGobi-kz.rd |only
rggobi-2.1.16/rggobi/man/close-GGobiDisplay-ke.rd |only
rggobi-2.1.16/rggobi/man/colorscheme-6n.rd | 2 -
rggobi-2.1.16/rggobi/man/connecting-edges-vf.rd |only
rggobi-2.1.16/rggobi/man/dataset-GGobiDisplay-gk.rd |only
rggobi-2.1.16/rggobi/man/dataset-mn.rd |only
rggobi-2.1.16/rggobi/man/dataset-numeric-gd.rd |only
rggobi-2.1.16/rggobi/man/dim-GGobiData-ok.rd |only
rggobi-2.1.16/rggobi/man/dimnames---GGobiData-ds.rd | 4 +--
rggobi-2.1.16/rggobi/man/dimnames-GGobiData-x0.rd |only
rggobi-2.1.16/rggobi/man/display-GGobiData-vz.rd |only
rggobi-2.1.16/rggobi/man/display-ce.rd | 4 +--
rggobi-2.1.16/rggobi/man/displays-GGobi-n2.rd |only
rggobi-2.1.16/rggobi/man/displays-kj.rd | 4 +--
rggobi-2.1.16/rggobi/man/edges---GGobi-m7.rd |only
rggobi-2.1.16/rggobi/man/edges---GGobiData-qe.rd |only
rggobi-2.1.16/rggobi/man/edges---GGobiDisplay-1y.rd | 2 -
rggobi-2.1.16/rggobi/man/edges--p8.rd | 4 +--
rggobi-2.1.16/rggobi/man/edges-lk.rd | 4 +--
rggobi-2.1.16/rggobi/man/excluded---GGobiData-3z.rd | 2 -
rggobi-2.1.16/rggobi/man/excluded-GGobiData-ic.rd |only
rggobi-2.1.16/rggobi/man/excluded-ec.rd |only
rggobi-2.1.16/rggobi/man/get--GGobi-7p.rd | 4 +--
rggobi-2.1.16/rggobi/man/get--GGobiData-9v.rd | 8 +++----
rggobi-2.1.16/rggobi/man/ggobi-GGobiDisplay-zh.rd |only
rggobi-2.1.16/rggobi/man/ggobi-check-structs-qq.rd | 4 ---
rggobi-2.1.16/rggobi/man/ggobi-count-u4.rd |only
rggobi-2.1.16/rggobi/man/ggobi-data-add-variable-xu.rd |only
rggobi-2.1.16/rggobi/man/ggobi-data-remove-variable-bv.rd |only
rggobi-2.1.16/rggobi/man/ggobi-data-set-variable-43.rd | 4 +--
rggobi-2.1.16/rggobi/man/ggobi-default-20.rd | 2 -
rggobi-2.1.16/rggobi/man/ggobi-display-get-tour-projection-p0.rd |only
rggobi-2.1.16/rggobi/man/ggobi-display-make-type-3r.rd | 4 +--
rggobi-2.1.16/rggobi/man/ggobi-display-set-tour-projection-2n.rd | 4 +--
rggobi-2.1.16/rggobi/man/ggobi-display-types-9g.rd | 4 +--
rggobi-2.1.16/rggobi/man/ggobi-find-file-fe.rd | 2 -
rggobi-2.1.16/rggobi/man/ggobi-get-2m.rd | 2 -
rggobi-2.1.16/rggobi/man/ggobi-gtk-main-window-l6.rd |only
rggobi-2.1.16/rggobi/man/ggobi-gtk-menu-bar-j4.rd | 2 -
rggobi-2.1.16/rggobi/man/ggobi-pcp-c7.rd | 2 -
rggobi-2.1.16/rggobi/man/ggobi-set-data-file-be.rd | 4 +--
rggobi-2.1.16/rggobi/man/ggobi-set-data-frame-vy.rd |only
rggobi-2.1.16/rggobi/man/ggobi-symbol-ec.rd |only
rggobi-2.1.16/rggobi/man/ggobi-version-ao.rd | 2 -
rggobi-2.1.16/rggobi/man/glyph-colour---GGobiData-u7.rd | 4 +--
rggobi-2.1.16/rggobi/man/glyph-colour-GGobiData-p2.rd |only
rggobi-2.1.16/rggobi/man/glyph-size---GGobiData-9w.rd |only
rggobi-2.1.16/rggobi/man/glyph-size-GGobiData-3t.rd | 2 -
rggobi-2.1.16/rggobi/man/glyph-type---GGobiData-r1.rd |only
rggobi-2.1.16/rggobi/man/glyph-type-GGobiData-og.rd |only
rggobi-2.1.16/rggobi/man/ids---GGobiData-mw.rd | 4 +--
rggobi-2.1.16/rggobi/man/ids-GGobiData-yu.rd |only
rggobi-2.1.16/rggobi/man/length-GGobiDisplay-gt.rd |only
rggobi-2.1.16/rggobi/man/mapGlyphType-t9.rd |only
rggobi-2.1.16/rggobi/man/names---GGobiData-p2.rd |only
rggobi-2.1.16/rggobi/man/names-GGobi-pt.rd |only
rggobi-2.1.16/rggobi/man/names-GGobiData-c0.rd | 4 +--
rggobi-2.1.16/rggobi/man/ncol-GGobiData-p3.rd |only
rggobi-2.1.16/rggobi/man/nrow-GGobiData-om.rd | 4 +--
rggobi-2.1.16/rggobi/man/pmode-ix.rd |only
rggobi-2.1.16/rggobi/man/pmodes-tc.rd | 2 -
rggobi-2.1.16/rggobi/man/print-GGobi-yo.rd |only
rggobi-2.1.16/rggobi/man/print-GGobiData-ja.rd |only
rggobi-2.1.16/rggobi/man/print-GGobiDisplay-o0.rd | 4 +--
rggobi-2.1.16/rggobi/man/rownames---GGobiData-rg.rd |only
rggobi-2.1.16/rggobi/man/rownames-GGobiData-pv.rd |only
rggobi-2.1.16/rggobi/man/selected-GGobiData-xv.rd | 4 +--
rggobi-2.1.16/rggobi/man/shadowed---GGobiData-h7.rd | 2 -
rggobi-2.1.16/rggobi/man/shadowed-GGobiData-8b.rd |only
rggobi-2.1.16/rggobi/man/summary-GGobi-c4.rd | 4 +--
rggobi-2.1.16/rggobi/man/summary-GGobiData-mm.rd |only
rggobi-2.1.16/rggobi/man/valid-ggobi-uv.rd |only
rggobi-2.1.16/rggobi/man/variable-index-h9.rd | 4 +--
rggobi-2.1.16/rggobi/man/variables--1i.rd |only
rggobi-2.1.16/rggobi/man/variables-2n.rd |only
rggobi-2.1.16/rggobi/man/variables-GGobiDisplay-si.rd |only
rggobi-2.1.16/rggobi/src/Makevars | 4 +--
rggobi-2.1.16/rggobi/src/RSGGobiEntryPoints.h | 4 +--
rggobi-2.1.16/rggobi/src/ggobi.c | 2 -
138 files changed, 88 insertions(+), 81 deletions(-)
Path: /cran/updated | permanent link
Title: Low-level R to Java interface
Diff between rJava versions 0.8-4 dated 2010-04-29 and 0.8-5 dated 2010-09-02
More information about rJava at CRAN
Description: Low-level interface to Java VM very much like .C/.Call and
friends. Allows creation of objects, calling methods and
accessing fields.
Author: Simon Urbanek
Maintainer: Simon Urbanek
DESCRIPTION | 4 -
NEWS | 13 +++
inst/java/boot/RJavaClassLoader$RJavaObjectInputStream.class |binary
inst/java/boot/RJavaClassLoader.class |binary
inst/java/boot/RJavaClassLoader.java | 10 ++-
inst/javadoc/ArrayDimensionException.html | 4 -
inst/javadoc/ArrayWrapper.html | 4 -
inst/javadoc/ArrayWrapper_Test.html | 4 -
inst/javadoc/DummyPoint.html | 4 -
inst/javadoc/FlatException.html | 4 -
inst/javadoc/NotAnArrayException.html | 4 -
inst/javadoc/NotComparableException.html | 4 -
inst/javadoc/ObjectArrayException.html | 4 -
inst/javadoc/PrimitiveArrayException.html | 4 -
inst/javadoc/RJavaArrayIterator.html | 4 -
inst/javadoc/RJavaArrayTools.ArrayDimensionMismatchException.html | 4 -
inst/javadoc/RJavaArrayTools.html | 4 -
inst/javadoc/RJavaArrayTools_Test.html | 4 -
inst/javadoc/RJavaClassLoader.html | 4 -
inst/javadoc/RJavaComparator.html | 4 -
inst/javadoc/RJavaImport.html | 4 -
inst/javadoc/RJavaTools.html | 4 -
inst/javadoc/RJavaTools_Test.DummyNonStaticClass.html | 4 -
inst/javadoc/RJavaTools_Test.TestException.html | 4 -
inst/javadoc/RJavaTools_Test.html | 4 -
inst/javadoc/RectangularArrayBuilder.html | 4 -
inst/javadoc/RectangularArrayBuilder_Test.html | 4 -
inst/javadoc/RectangularArrayExamples.html | 4 -
inst/javadoc/RectangularArraySummary.html | 4 -
inst/javadoc/TestException.html | 4 -
inst/javadoc/allclasses-frame.html | 4 -
inst/javadoc/allclasses-noframe.html | 4 -
inst/javadoc/constant-values.html | 4 -
inst/javadoc/deprecated-list.html | 4 -
inst/javadoc/help-doc.html | 4 -
inst/javadoc/index-all.html | 4 -
inst/javadoc/index.html | 2
inst/javadoc/overview-tree.html | 4 -
inst/javadoc/package-frame.html | 4 -
inst/javadoc/package-summary.html | 4 -
inst/javadoc/package-tree.html | 4 -
inst/javadoc/serialized-form.html | 4 -
inst/jri/JRIEngine.jar |binary
inst/jri/REngine.jar |binary
jri/NEWS | 9 ++
jri/Rengine.java | 16 ++--
jri/src/Rengine.c | 33 ++++------
jri/src/jri.h | 8 +-
src/java/RJavaClassLoader$RJavaObjectInputStream.class |binary
src/java/RJavaClassLoader.class |binary
src/java/RJavaClassLoader.java | 10 ++-
src/rJava.h | 2
52 files changed, 144 insertions(+), 107 deletions(-)
Path: /cran/updated | permanent link
Title: Toolkit implementation of the gWidgets API for use with web
pages
Diff between gWidgetsWWW versions 0.0-19 dated 2010-06-19 and 0.0-21 dated 2010-09-02
More information about gWidgetsWWW at CRAN
Description: Port of the gWidgets API to program dynamic websites. Can
be used with R's dynamic help web server to serve local files.
This provides a convenient means to make local GUIs for users
without concern for external GUI toolkits. Also, in combination
with RApache,
http://biostat.mc.vanderbilt.edu/rapache/index.html, this
framework can be used to make public websites powered by R. The
Ext JavaScript libararies (www.extjs.com) are used to create
and manipulate the widgets dynamically.
Author: John Verzani
Maintainer: John Verzani
gWidgetsWWW-0.0-19/gWidgetsWWW/R/gcodemirror.R |only
gWidgetsWWW-0.0-19/gWidgetsWWW/inst/basehtml/codemirror |only
gWidgetsWWW-0.0-21/gWidgetsWWW/ChangeLog | 9
gWidgetsWWW-0.0-21/gWidgetsWWW/DESCRIPTION | 23 -
gWidgetsWWW-0.0-21/gWidgetsWWW/NAMESPACE | 2
gWidgetsWWW-0.0-21/gWidgetsWWW/NEWS | 12
gWidgetsWWW-0.0-21/gWidgetsWWW/R/LocalVersion.R | 156 +++++++---
gWidgetsWWW-0.0-21/gWidgetsWWW/R/aaa.R | 1
gWidgetsWWW-0.0-21/gWidgetsWWW/R/common.R | 18 +
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gcanvas.R | 4
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gcommandline.R | 2
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gdf.R | 8
gWidgetsWWW-0.0-21/gWidgetsWWW/R/ggooglemaps.R | 25 -
gWidgetsWWW-0.0-21/gWidgetsWWW/R/ggroup.R | 12
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gsvg.R | 4
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gtext.R | 5
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gwebvis.R |only
gWidgetsWWW-0.0-21/gWidgetsWWW/R/gwindow.R | 57 ++-
gWidgetsWWW-0.0-21/gWidgetsWWW/TODO.txt | 1
gWidgetsWWW-0.0-21/gWidgetsWWW/inst/Examples/ex-clt.R | 10
gWidgetsWWW-0.0-21/gWidgetsWWW/inst/Examples/ex-widgets.R | 7
gWidgetsWWW-0.0-21/gWidgetsWWW/inst/doc/gWidgetsWWW.pdf |binary
gWidgetsWWW-0.0-21/gWidgetsWWW/man/gWidgetsWWW-undocumented.Rd | 1
gWidgetsWWW-0.0-21/gWidgetsWWW/man/gwebvis.Rd |only
gWidgetsWWW-0.0-21/gWidgetsWWW/man/localServerStart.Rd | 5
25 files changed, 245 insertions(+), 117 deletions(-)
Path: /cran/updated | permanent link
Title: Binary R server
Diff between Rserve versions 0.6-1 dated 2010-05-25 and 0.6-2 dated 2010-09-02
More information about Rserve at CRAN
Description: Rserve acts as a socket server (TCP/IP or local sockets)
which allows binary requests to be sent to R. Every connection
has a separate workspace and working directory. Client-side
implementations are available for popular languages such as
C/C++ and Java, allowing any application to use facilities of R
without the need of linking to R code. Rserve supports remote
connection, user authentication and file transfer. A simple R
client is included in this package as well.
Author: Simon Urbanek
Maintainer: Simon Urbanek
DESCRIPTION | 4
NEWS | 31 +
clients/cxx/Rconnection.cc | 62 +++
clients/cxx/Rconnection.h | 35 ++
clients/cxx/Rsrv.h | 6
clients/cxx/configure | 293 +++++++++---------
clients/java-new/Rserve/protocol/REXPFactory.java | 51 +--
clients/java-new/Rserve/test/test.java | 29 +
configure | 299 +++++++++----------
src/Makefile.win | 15
src/Rserv.c | 81 +++--
src/Rsrv.h | 6
src/client/cxx/Rconnection.cc | 62 +++
src/client/cxx/Rconnection.h | 35 ++
src/client/cxx/Rsrv.h | 6
src/client/cxx/configure | 293 +++++++++---------
src/client/java-new/Rserve/protocol/REXPFactory.java | 51 +--
src/client/java-new/Rserve/test/test.java | 29 +
src/winembed.c | 34 +-
19 files changed, 900 insertions(+), 522 deletions(-)
Path: /cran/updated | permanent link
Title: SPArse Matrix
Diff between spam versions 0.22-0 dated 2010-06-09 and 0.23-0 dated 2010-09-02
More information about spam at CRAN
Description: Set of function for sparse matrix algebra. Differences
with SparseM/Matrix are: (1) we only support (essentially) one
sparse matrix format, (2) based on transparent and simple
structure(s), (3) tailored for MCMC calculations within GMRF.
(4) S3 and S4 like-"compatible" ... and it is fast.
Author: Reinhard Furrer
Maintainer: Reinhard Furrer
DESCRIPTION | 8 ++++----
R/apply.R | 2 +-
R/definitions.R | 2 +-
R/dist.R | 2 +-
R/foreign.R | 2 +-
R/helper.R | 2 +-
R/kronecker.R | 2 +-
R/mle.R | 2 +-
R/permutation.R | 2 +-
R/plotting.R | 2 +-
R/profile.R | 2 +-
R/spam_solve.R | 2 +-
R/xybind.R | 2 +-
demo/article-jss-example1.R | 22 +++++++++++-----------
demo/article-jss-example2.R | 24 ++++++++++++------------
demo/article-jss.R | 14 +++++++-------
demo/cholesky.R | 2 +-
demo/spam.R | 2 +-
demo/timing.R | 2 +-
inst/CITATION |only
inst/NEWS | 9 +++++++++
man/Oral.Rd | 2 +-
man/SPAM.Rd | 11 +++++++----
man/UScounties.Rd | 4 ++--
man/USprecip.Rd | 2 +-
man/allequal.Rd | 2 +-
man/apply.Rd | 2 +-
man/bandwidth.Rd | 11 +++++------
man/bdiag.Rd | 2 +-
man/chol.Rd | 2 +-
man/complexity.Rd | 2 +-
man/det.Rd | 2 +-
man/diag.Rd | 2 +-
man/dim.Rd | 2 +-
man/display.Rd | 26 +++++++++++++-------------
man/foreign.Rd | 2 +-
man/germany.Rd | 4 ++--
man/history.spam.Rd | 5 +++--
man/image.Rd | 2 +-
man/import.Rd | 5 ++---
man/isSymmetric.Rd | 2 +-
man/kronecker.Rd | 10 +++++-----
man/lu.tri.Rd | 2 +-
man/math.Rd | 2 +-
man/math2.Rd | 2 +-
man/mle.Rd | 2 +-
man/nearestdist.Rd | 2 +-
man/operations.Rd | 2 +-
man/options.Rd | 2 +-
man/ordering.Rd | 2 +-
man/permutation.Rd | 2 +-
man/powerboost.Rd | 2 +-
man/print.Rd | 2 +-
man/rmvnorm.Rd | 2 +-
man/solve.Rd | 2 +-
man/spam-class.Rd | 2 +-
man/spam.chol.NgPeyton-class.Rd | 2 +-
man/spam.creation.Rd | 2 +-
man/spam.internal.Rd | 2 +-
man/summary.Rd | 2 +-
man/todo.Rd | 2 +-
man/triplet.Rd | 2 +-
man/version.Rd | 2 +-
man/xybind.Rd | 2 +-
tests/demo_article-jss-example1.R | 2 +-
tests/demo_article-jss-example1.Rout.save | 6 +++---
tests/demo_article-jss-example2.R | 2 +-
tests/demo_article-jss-example2.Rout.save | 11 ++++++-----
tests/demo_article-jss.R | 2 +-
tests/demo_article-jss.Rout.save | 6 +++---
tests/demo_cholesky.R | 2 +-
tests/demo_cholesky.Rout.save | 6 +++---
tests/demo_spam.R | 2 +-
tests/demo_spam.Rout.save | 6 +++---
tests/demo_timing.R | 2 +-
tests/demo_timing.Rout.save | 6 +++---
tests/displays.R | 2 +-
tests/displays.Rout.save | 6 +++---
tests/dist.R | 2 +-
tests/dist.Rout.save | 6 +++---
tests/foreign.R | 2 +-
tests/foreign.Rout.save | 4 ++--
tests/helper.R | 2 +-
tests/helper.Rout.save | 6 +++---
tests/kronecker.R | 2 +-
tests/kronecker.Rout.save | 6 +++---
tests/mle.R | 2 +-
tests/mle.Rout.save | 6 +++---
tests/overall.R | 2 +-
tests/overall.Rout.save | 6 +++---
tests/permutation.R | 2 +-
tests/permutation.Rout.save | 6 +++---
tests/solve.R | 2 +-
tests/solve.Rout.save | 6 +++---
tests/xybind.R | 2 +-
tests/xybind.Rout.save | 6 +++---
96 files changed, 198 insertions(+), 186 deletions(-)
Path: /cran/updated | permanent link
Title: Read data from files readable by gnumeric
Diff between gnumeric versions 0.5-3 dated 2009-09-18 and 0.6-1 dated 2010-09-02
More information about gnumeric at CRAN
Description: Read data files readable by gnumeric into R. Can read
whole sheet or a range, from several file formats, including
the native format of gnumeric. Reading is done by using
ssconvert (a file converter utility included in the gnumeric
distribution http://projects.gnome.org/gnumeric/) to convert
the requested part to CSV. From gnumeric files (but not other
formats) can list sheet names and sheet sizes or read all
sheets.
Author: Karoly Antal
Maintainer: Karoly Antal
DESCRIPTION | 8 ++++----
R/read.gnumeric.R | 28 +++++++++++++++++++++++-----
changelog | 13 ++++++++++++-
man/read.gnumeric.sheet.Rd | 22 +++++++++++++---------
man/read.gnumeric.sheets.Rd | 13 ++++++++++---
5 files changed, 62 insertions(+), 22 deletions(-)
Path: /cran/updated | permanent link
Title: Multidimensional Numerical Integration
Diff between R2Cuba versions 1.0-5 dated 2010-09-01 and 1.0-6 dated 2010-09-02
More information about R2Cuba at CRAN
Description: R2Cuba implements four general-purpose multidimensional
integration algorithms: Vegas, Suave, Divonne and Cuhre
Author: The Cuba library has been written by Thomas Hahn
(http://wwwth.mppmu.mpg.de/members/hahn); Interface to R was
written by Annie Bouvier and Kiên Kiêu
Maintainer: Annie Bouvier
DESCRIPTION | 9 +++++----
man/R2Cuba-package.Rd | 7 ++++---
2 files changed, 9 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: FISH Based Normalization and Copy Number inference of SNP
microarray data
Diff between FBN versions 1.4 dated 2010-02-03 and 1.5 dated 2010-09-02
More information about FBN at CRAN
Description: Normalizes the data from a file containing the raw values
of the SNP probes of microarrray data by using the FISH probes
and their corresponding CNs.
Author: Adrian Andronache
Maintainer: Adrian Andronache
DESCRIPTION | 8 ++++----
R/FBNormalization.R | 38 ++++++++++++++++++++++++++++++--------
man/FBN-package.Rd | 4 ++--
man/FBNormalization.Rd | 6 ++++--
4 files changed, 40 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: Text Analysis Utilities
Diff between tau versions 0.0-9 dated 2010-08-10 and 0.0-10 dated 2010-09-02
More information about tau at CRAN
Description: Utilities for text analysis
Author: Christian Buchta, Kurt Hornik, Ingo Feinerer, David Meyer
Maintainer: Kurt Hornik
DESCRIPTION | 9 +++++----
R/sysdata.rda |binary
2 files changed, 5 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Title: Cluster ensembles
Diff between clue versions 0.3-34 dated 2010-04-27 and 0.3-35 dated 2010-09-02
More information about clue at CRAN
Description: CLUster Ensembles
Author: Kurt Hornik, with contributions from Walter Boehm
Maintainer: Kurt Hornik
DESCRIPTION | 11 ++++++-----
R/dissimilarity.R | 14 ++++++++++++++
R/membership.R | 15 +++++++++++++--
R/objects.R | 2 +-
R/partition.R | 9 ++++++++-
R/pclust.R | 14 +++++++++-----
R/registration.R | 3 +++
inst/doc/clue.pdf |binary
man/cl_dissimilarity.Rd | 8 ++++++++
man/pclust.Rd | 4 ++--
10 files changed, 64 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: Latent position and cluster models for statistical networks
Diff between latentnet versions 2.3-0 dated 2010-04-07 and 2.4-0 dated 2010-09-02
More information about latentnet at CRAN
Description: A package to fit and simulate latent position and cluster
models for statistical networks.
Author: Pavel N. Krivitsky
Maintainer: Pavel N. Krivitsky
ChangeLog | 17 ++++++
DESCRIPTION | 12 ++--
R/bayesmbc.R | 12 ++--
R/ergmm.MCMC.C.R | 36 ++++++-------
R/ergmm.R | 9 +--
R/ergmm.get.model.R | 6 +-
R/ergmm.initvals.R | 121 ++++++++++++++++++++++++++++++---------------
R/ergmm.par.R | 10 +--
R/ergmm.statseval.R | 14 -----
R/ergmm.tuner.R | 35 ++++++++-----
R/gof.ergmm.R | 2
R/label.switching.R | 2
R/mcmc.diagnostics.ergmm.R | 6 +-
R/plot.ergmm.R | 2
R/summary.ergmm.R | 8 +-
R/utilities.R | 3 -
man/as.mcmc.list.ergmm.Rd | 13 ++--
man/ergmm.object.Rd | 5 -
man/latentnet-internal.Rd | 5 +
man/summary.ergmm.Rd | 42 ++++++++++++++-
20 files changed, 231 insertions(+), 129 deletions(-)
Path: /cran/updated | permanent link
Title: Smoothed minimax concave penalization (SMCP) method for
genome-wide association studies.
Diff between SMCP versions 1.1.2 dated 2010-08-30 and 1.1.3 dated 2010-09-02
More information about SMCP at CRAN
Description: A package containing functions for genome-wide association
studies.
Author: Jin (Gordon) Liu
Maintainer: Jin (Gordon) Liu
DESCRIPTION | 12 ++++++------
R/SMCP.R | 2 +-
man/SMCP.Rd | 15 +++++++--------
3 files changed, 14 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Title: Classification and Regression Training
Diff between caret versions 4.58 dated 2010-08-29 and 4.59 dated 2010-09-01
More information about caret at CRAN
Description: Misc functions for training and plotting classification
and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn
DESCRIPTION | 8 +-
R/rfe.R | 90 ++++++++++++++++++-------
R/selectByFilter.R | 156 +++++++++++++++++++++++++++++++++++---------
inst/NEWS | 12 +++
inst/doc/caretMisc.pdf |binary
inst/doc/caretSelection.R | 83 ++++++++++++++++++-----
inst/doc/caretSelection.Rnw | 79 ++++++++++++++++++++--
inst/doc/caretSelection.pdf |binary
inst/doc/caretTrain.pdf |binary
inst/doc/caretVarImp.pdf |binary
man/nullModel.Rd | 8 +-
man/trainControl.Rd | 2
12 files changed, 351 insertions(+), 87 deletions(-)
Path: /cran/updated | permanent link
Title: Time wave analysis and graphical representation
Diff between seewave versions 1.5.8 dated 2010-06-15 and 1.5.9 dated 2010-09-01
More information about seewave at CRAN
Description: seewave provides functions for analysing, manipulating,
displaying, editing and synthesizing time waves (particularly
sound). This package processes time analysis (oscillograms and
envelopes), spectral content, resonance quality factor,
entropy, cross correlation and autocorrelation, zero-crossing,
dominant frequency, analytic signal, frequency coherence, 2D
and 3D spectrograms and many other analyses.
Author: Jerome Sueur
Maintainer: Jerome Sueur
DESCRIPTION | 12
NAMESPACE | 2
NEWS | 15 -
R/seewave.r | 602 +++++++++++++++++++++++++++---------------------
inst/doc/seewave_IO.pdf |binary
man/autoc.Rd | 25 +
man/corenv.Rd | 3
man/covspectro.Rd | 3
man/csh.Rd | 7
man/dfreq.Rd | 7
man/dynspec.Rd | 10
man/ffilter.Rd | 5
man/fund.Rd | 3
man/lfs.Rd | 12
man/meanspec.Rd | 17 -
man/oscillo.Rd | 7
man/seewave.package.Rd | 4
man/spec.Rd | 7
man/spectro.Rd | 15 +
man/spectro3D.Rd | 7
man/wf.Rd | 7
21 files changed, 455 insertions(+), 315 deletions(-)
Path: /cran/updated | permanent link
Title: Statistical Catch-at-Age Plotting Environment
Diff between scape versions 1.1-0 dated 2010-08-31 and 1.1-2 dated 2010-09-01
More information about scape at CRAN
Description: Import and plot results from statistical catch-at-age
models, used in fisheries stock assessments.
Author: Arni Magnusson
Maintainer: Arni Magnusson
DESCRIPTION | 8
NEWS | 6
R/importCol.R | 33
data/x.cod.R | 853 ++++----
data/x.ling.R | 3920 ++++++++++++++++++++---------------------
data/x.oreo.R | 4376 +++++++++++++++++++++++-----------------------
data/x.sbw.R | 785 ++++----
inst/doc/Rplots.pdf | 2937 ++++++++++--------------------
inst/doc/dsc-vignette.pdf |binary
inst/doc/gallery.pdf |binary
inst/doc/mymodel.pdf |binary
man/importCol.Rd | 7
man/x.cod.Rd | 4
man/x.ling.Rd | 4
man/x.oreo.Rd | 5
man/x.sbw.Rd | 4
16 files changed, 6122 insertions(+), 6820 deletions(-)
Path: /cran/updated | permanent link
Title: P2BAT
Diff between pbatR versions 2.2-0 dated 2009-11-23 and 2.2-2 dated 2010-09-01
More information about pbatR at CRAN
Description: This package provides data analysis via the pbat program,
and an alternative internal implementation of the power
calculations via simulation only. For analysis, this package
provides a frontend to the PBAT software, automatically reading
in the output from the pbat program and displaying the
corresponding figure when appropriate (i.e. PBAT-logrank). It
includes support for multiple processes and clusters. For
analysis, users must download PBAT (developed by Christoph
Lange) and accept it's license, available on the PBAT webpage.
Both the data analysis and power calculations have command line
and graphical interfaces using tcltk.
Author: Thomas Hoffmann
Maintainer: Thomas Hoffmann
DESCRIPTION | 8 +++----
R/createCommandfile.R | 55 ++++++++++++++++++++++++++++++++++++++++----------
R/pbat.m.R | 2 -
R/pbatGUI.R | 5 ++--
man/pbat.Rd | 8 ++++---
src/kludge.cpp | 25 ++++++++++++----------
src/powerSim.cpp | 20 ++++++++++--------
src/thmalloc.h |only
8 files changed, 83 insertions(+), 40 deletions(-)
Path: /cran/updated | permanent link
Title: Interface between GMT Map-Making Software and R
Diff between gmt versions 1.1-7 dated 2010-08-28 and 1.1-8 dated 2010-09-01
More information about gmt at CRAN
Description: Interface between the GMT map-making software and R,
enabling the user to manipulate geographic data within R and
call GMT commands to draw and annotate maps in postscript
format. The 'gmt' package is about interactive data analysis,
rapidly visualizing subsets and summaries of geographic data,
while performing statistical analysis in the R console.
Author: Arni Magnusson
Maintainer: Arni Magnusson
DESCRIPTION | 8 ++++----
NEWS | 4 ++--
man/gmt-package.Rd | 2 +-
3 files changed, 7 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: Efficient selection of undirected graphical models for
high-dimensional datasets
Diff between gRapHD versions 0.1.7 dated 2010-08-17 and 0.1.8 dated 2010-09-01
More information about gRapHD at CRAN
Description: gRapHD is designed for efficient selection of
high-dimensional undirected graphical models. The package
provides tools for selecting trees, forests and decomposable
models minimizing information criteria such as AIC or BIC, and
for displaying the independence graphs of the models. It has
also some useful tools for analysing graphical structures. It
supports the use of discrete, continuous, or both types of
variables.
Author: Gabriel Coelho Goncalves de Abreu
Maintainer: Gabriel Coelho Goncalves de Abreu
DESCRIPTION | 6 ++---
R/functions.r | 66 +++++++++++++++++++++++++++++++---------------------------
man/fit.rd | 7 ++++--
3 files changed, 44 insertions(+), 35 deletions(-)
Path: /cran/updated | permanent link
Title: Multidimensional Numerical Integration
Diff between R2Cuba versions 1.0-4 dated 2010-02-08 and 1.0-5 dated 2010-09-01
More information about R2Cuba at CRAN
Description: R2Cuba implements four general-purpose multidimensional
integration algorithms: Vegas, Suave, Divonne and Cuhre
Author: The Cuba library has been written by Thomas Hahn
(http://wwwth.mppmu.mpg.de/members/hahn); Interface to R was
written by Annie Bouvier and Kiên Kiêu
Maintainer: Annie Bouvier
DESCRIPTION | 8 ++++----
R/commoncuba.R | 7 +++++--
R/cuhre.R | 3 ++-
R/divonne.R | 3 ++-
R/suave.R | 3 ++-
R/vegas.R | 3 ++-
man/R2Cuba-package.Rd | 4 ++--
man/cuhre.Rd | 1 +
src/cuhre_Cuhre.c | 1 -
src/cuhre_common.c | 2 +-
src/vegas_Vegas.c | 3 ++-
tests/kk.Rout.save | 10 +++++++---
12 files changed, 30 insertions(+), 18 deletions(-)
Path: /cran/updated | permanent link
Title: A package for statistical analysis in epidemiology.
Diff between Epi versions 1.1.15 dated 2010-06-19 and 1.1.17 dated 2010-09-01
More information about Epi at CRAN
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data,
including interval censored data and representation of
multistate data. Also some useful functions for tabulation and
plotting. Contains some epidemiological datasets.
Author: Bendix Carstensen, Martyn Plummer, Esa Laara, Michael Hills et.
al.
Maintainer: Bendix Carstensen
Epi-1.1.15/Epi/inst/doc/Rplots.pdf |only
Epi-1.1.15/Epi/man/mstate.Lexis.Rd |only
Epi-1.1.17/Epi/CHANGES | 20 +
Epi-1.1.17/Epi/DESCRIPTION | 10
Epi-1.1.17/Epi/NAMESPACE | 9
Epi-1.1.17/Epi/R/MS.boxes.R | 7
Epi-1.1.17/Epi/R/lexis.R | 9
Epi-1.1.17/Epi/R/stack.Lexis.R | 68 ++---
Epi-1.1.17/Epi/inst/doc/Follow-up.pdf | 424 ++++++++++++++++------------------
Epi-1.1.17/Epi/man/msdata.Lexis.Rd |only
Epi-1.1.17/Epi/man/plot.Lexis.Rd | 9
Epi-1.1.17/Epi/man/transform.Lexis.Rd | 9
12 files changed, 291 insertions(+), 274 deletions(-)
Path: /cran/updated | permanent link
Title: Wrapper package for design of experiments functionality
Diff between DoE.wrapper versions 0.8 dated 2010-08-10 and 0.8-1 dated 2010-09-01
More information about DoE.wrapper at CRAN
Description: This package creates various kinds of designs for
(industrial) experiments. It uses, and sometimes enhances,
design generation routines from other packages. Initially,
response surface designs from package rsm and latin hypercube
samples from package lhs have been implemented.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
DESCRIPTION | 8 ++++----
inst/NEWS | 3 +++
man/Dopt.augment.Rd | 3 +--
man/Dopt.design.Rd | 3 +--
4 files changed, 9 insertions(+), 8 deletions(-)
Path: /cran/updated | permanent link
Title: A software package for annotation and identification of the KEGG
pathways.
Diff between SubpathwayMiner versions 3.0 dated 2010-06-01 and 3.1 dated 2010-09-01
More information about SubpathwayMiner at CRAN
Description: SubpathwayMiner is an R-based software for flexible
pathway identification. (1) SubpathwayMiner can provide users
with sub-pathway annotation and identification of metabolic
pathways based on enzyme commission (EC) numbers. (2)
SubpathwayMiner can provide users with sub-pathway annotation
and identification based on KEGG Orthology (KO) identifiers.
(3) SubpathwayMiner can provide annotation and identification
of entire pathways. (4) SubpathwayMiner can support most of
organisms in the KEGG GENE database. (5) Data can be
automatically updated on demand by the user. (6)
SubpathwayMiner can provide identification of disease related
sub-pathways.(new!) The version 3.1 use a new approach to store
organism-related data (e.g., gene-enzyme relation data), which
make the running time of the function updateOrgAndIdType reduce
significantly compared with the old version. Therefore, the
environment variables of organisms will be provided no longer
for reducing size of the software package. When using this
tool, please cite: Li, C., Li, X., Miao, Y., Wang, Q., Jiang,
W., Xu, C., Li, J., Han, J., Zhang, F., Gong, B. et al. (2009)
SubpathwayMiner: a software package for flexible identification
of pathways. Nucleic Acids Res, 37, e131. Full text:
http://nar.oxfordjournals.org/cgi/content/full/37/19/e131
Author: Chunquan Li
Maintainer: Chunquan Li
SubpathwayMiner-3.0/SubpathwayMiner/R/id.R |only
SubpathwayMiner-3.0/SubpathwayMiner/data/ath_ncbi-geneid.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/cel_ncbi-geneid.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/dme_ncbi-geneid.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/eco_ncbi-geneid.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/hsa_ensembl-hsa.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/hsa_ncbi-gi.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/inData.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/mmu_ncbi-geneid.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/osa_ncbi-geneid.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/pathwayClass.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/sce_ncbi-geneid.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/sce_ncbi-gi.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/data/sce_sgd-sce.rda |only
SubpathwayMiner-3.0/SubpathwayMiner/man/KO2gene.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/KOuGraph.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/background.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/dGraph.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/ec2gene.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/gene2KO.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/gene2ec.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/gene2path.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/getEnzymeFromGene.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/getGeneFromEnzyme.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/getGeneFromKO.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/getGeneFromPathway.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/getKOFromGene.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/getPathwayFromGene.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/getPathwayNameFromId.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/keggpathid2name.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/kpidList.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/mpidList.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/path2gene.Rd |only
SubpathwayMiner-3.0/SubpathwayMiner/man/uGraph.Rd |only
SubpathwayMiner-3.1/SubpathwayMiner/DESCRIPTION | 24 +
SubpathwayMiner-3.1/SubpathwayMiner/R/D2P.R | 3
SubpathwayMiner-3.1/SubpathwayMiner/R/ann.R | 11
SubpathwayMiner-3.1/SubpathwayMiner/R/go2go.R | 156 ++++++----
SubpathwayMiner-3.1/SubpathwayMiner/R/graph.R | 2
SubpathwayMiner-3.1/SubpathwayMiner/R/initialize.R | 82 ++---
SubpathwayMiner-3.1/SubpathwayMiner/R/ko.R | 4
SubpathwayMiner-3.1/SubpathwayMiner/R/visualize.R | 10
SubpathwayMiner-3.1/SubpathwayMiner/data/hsa_ncbi-geneid.rda |binary
SubpathwayMiner-3.1/SubpathwayMiner/inst/doc/Rplots.pdf | 85 +++--
SubpathwayMiner-3.1/SubpathwayMiner/inst/doc/SubpathwayMiner.Rnw | 38 +-
SubpathwayMiner-3.1/SubpathwayMiner/inst/doc/SubpathwayMiner.pdf |binary
SubpathwayMiner-3.1/SubpathwayMiner/inst/localdata |only
SubpathwayMiner-3.1/SubpathwayMiner/man/Ke2gEnvironment.Rd | 24 -
SubpathwayMiner-3.1/SubpathwayMiner/man/SubpathwayMiner-internal.Rd | 22 -
SubpathwayMiner-3.1/SubpathwayMiner/man/cutoffAnn.Rd | 3
SubpathwayMiner-3.1/SubpathwayMiner/man/generateNetwork.Rd | 18 -
SubpathwayMiner-3.1/SubpathwayMiner/man/getAnn.Rd | 8
SubpathwayMiner-3.1/SubpathwayMiner/man/getDefaultBackground.Rd | 4
SubpathwayMiner-3.1/SubpathwayMiner/man/getDefaultGraph.Rd | 8
SubpathwayMiner-3.1/SubpathwayMiner/man/getDefaultKOPathway.Rd | 2
SubpathwayMiner-3.1/SubpathwayMiner/man/getDefaultKOUndirectedGraph.Rd | 2
SubpathwayMiner-3.1/SubpathwayMiner/man/getDefaultMetabolicPathway.Rd | 2
SubpathwayMiner-3.1/SubpathwayMiner/man/getDefaultUndirectedGraph.Rd | 2
SubpathwayMiner-3.1/SubpathwayMiner/man/getKOAnn.Rd | 16 -
SubpathwayMiner-3.1/SubpathwayMiner/man/getKcSubGraph.Rd | 19 -
SubpathwayMiner-3.1/SubpathwayMiner/man/getKcsmpAnn.Rd | 9
SubpathwayMiner-3.1/SubpathwayMiner/man/getMpAnn.Rd | 9
SubpathwayMiner-3.1/SubpathwayMiner/man/go2go.Rd |only
SubpathwayMiner-3.1/SubpathwayMiner/man/gotoKEGG.Rd | 24 -
SubpathwayMiner-3.1/SubpathwayMiner/man/ke2g.Rd | 17 -
SubpathwayMiner-3.1/SubpathwayMiner/man/plotAnn.Rd | 16 -
SubpathwayMiner-3.1/SubpathwayMiner/man/plotKOAnn.Rd | 16 -
SubpathwayMiner-3.1/SubpathwayMiner/man/printAnn.Rd | 4
SubpathwayMiner-3.1/SubpathwayMiner/man/updateGraphs.Rd | 9
SubpathwayMiner-3.1/SubpathwayMiner/man/updateKOGraphs.Rd | 5
SubpathwayMiner-3.1/SubpathwayMiner/man/updateOrgAndIdType.Rd | 22 -
71 files changed, 397 insertions(+), 279 deletions(-)
Path: /cran/updated | permanent link
Title: Construct time delay gene regulatory network
Diff between GeneReg versions 1.1.1 dated 2009-12-14 and 1.1.2 dated 2010-09-01
More information about GeneReg at CRAN
Description: GeneReg is an R package for inferring time delay gene
regulatory network using time course gene expression profiles.
The main idea of time delay linear model is to fit a linear
regression model using a set of putative regulators to estimate
the transcription pattern of a specific target gene.
Author: Tao Huang
Maintainer: Tao Huang
DESCRIPTION | 10 +++++++---
R/plot.R | 3 ++-
R/timedelay.lm.R | 3 ++-
data/mut.expr.data.rda |binary
data/tf.list.rda |binary
data/wt.expr.data.rda |binary
man/GeneReg-package.Rd | 8 ++++----
man/plot.GeneReg.Rd | 5 ++++-
man/timedelay.lm.Rd | 5 ++++-
man/timedelay.lm.batch.Rd | 5 ++++-
man/timedelay.univariate.lm.Rd | 4 ++++
11 files changed, 31 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Title: Extensible Time Series
Diff between xts versions 0.7-4 dated 2010-08-04 and 0.7-5 dated 2010-08-31
More information about xts at CRAN
Description: Provide for uniform handling of R's different time-based
data classes by extending zoo, maximizing native format
information preservation and allowing for user level
customization and extension, while simplifying cross-class
interoperability.
Author: Jeffrey A. Ryan, Josh M. Ulrich
Maintainer: Jeffrey A. Ryan
xts-0.7-4/xts/inst/unitTests/report.html |only
xts-0.7-4/xts/inst/unitTests/report.txt |only
xts-0.7-4/xts/inst/unitTests/reportSummary.txt |only
xts-0.7-5/xts/DESCRIPTION | 10 -
xts-0.7-5/xts/NEWS | 26 +++++
xts-0.7-5/xts/R/endpoints.R | 2
xts-0.7-5/xts/R/index.R | 1
xts-0.7-5/xts/R/indexTZ.R | 17 ++-
xts-0.7-5/xts/R/origin.fix.R | 2
xts-0.7-5/xts/R/toperiod.R | 10 +
xts-0.7-5/xts/R/xts.R | 15 ++
xts-0.7-5/xts/R/xts.methods.R | 6 -
xts-0.7-5/xts/R/xtsible.R | 4
xts-0.7-5/xts/inst/doc/xts.pdf |binary
xts-0.7-5/xts/man/xts-package.Rd | 6 -
xts-0.7-5/xts/src/coredata.c | 3
xts-0.7-5/xts/src/subset.c | 129 ++++++++++++++++++++++++-
17 files changed, 203 insertions(+), 28 deletions(-)
Path: /cran/updated | permanent link
Title: Chronological objects which can handle dates and times
Diff between chron versions 2.3-35 dated 2010-04-05 and 2.3-36 dated 2010-08-31
More information about chron at CRAN
Description: Chronological objects which can handle dates and times
Author: S original by David James
Maintainer: Kurt Hornik
ChangeLog | 9 ++++++++-
DESCRIPTION | 8 ++++----
R/chron.R | 6 +++---
3 files changed, 15 insertions(+), 8 deletions(-)
Path: /cran/updated | permanent link
Title: Bayesian Estimation of the GARCH(1,1) Model with Student-t
Innovations
Diff between bayesGARCH versions 1-00.05 dated 2009-11-25 and 1-00.06 dated 2010-08-31
More information about bayesGARCH at CRAN
Description: This package provides the bayesGARCH function which
performs the Bayesian estimation of the GARCH(1,1) model with
Student's t innovations.
Author: David Ardia
Maintainer: David Ardia
bayesGARCH-1-00.05/bayesGARCH/man/addPriorConditions.Rd |only
bayesGARCH-1-00.06/bayesGARCH/COPYRIGHTS | 2
bayesGARCH-1-00.06/bayesGARCH/DESCRIPTION | 8 -
bayesGARCH-1-00.06/bayesGARCH/NAMESPACE | 1
bayesGARCH-1-00.06/bayesGARCH/NEWS | 7 +
bayesGARCH-1-00.06/bayesGARCH/R/functions.R | 11 --
bayesGARCH-1-00.06/bayesGARCH/R/onload.R | 2
bayesGARCH-1-00.06/bayesGARCH/R/sampler.R | 20 ++-
bayesGARCH-1-00.06/bayesGARCH/THANKS | 3
bayesGARCH-1-00.06/bayesGARCH/demo/bayesGARCH.R | 14 --
bayesGARCH-1-00.06/bayesGARCH/inst/CITATION | 8 -
bayesGARCH-1-00.06/bayesGARCH/man/bayesGARCH.Rd | 85 ++++++++++++----
12 files changed, 103 insertions(+), 58 deletions(-)
Path: /cran/updated | permanent link
Title: Normalised prediction distribution errors for nonlinear
mixed-effect models
Diff between npde versions 1.2 dated 2008-04-02 and 1.2.1 dated 2010-08-31
More information about npde at CRAN
Description: Routines to compute normalised prediction distribution
errors, a metric designed to evaluate non-linear mixed effect
models such as those used in pharmacokinetics and
pharmacodynamics
Author: Emmanuelle Comets, Karl Brendel and France Mentré
Maintainer: Emmanuelle Comets
DESCRIPTION | 16 +++++++++++-----
man/calcnpde.Rd | 4 ++--
man/computenpde.Rd | 4 ++--
man/computepd.Rd | 4 ++--
man/graphnpde.Rd | 4 ++--
man/plotnpde.Rd | 7 +++----
man/plotpd.Rd | 10 ++++------
man/readobs.Rd | 4 ++--
8 files changed, 28 insertions(+), 25 deletions(-)
Path: /cran/updated | permanent link
Title: Nearest Neighbor Autocovariates
Diff between nnc versions 1.13 dated 2010-08-30 and 1.14 dated 2010-08-31
More information about nnc at CRAN
Description: Computes nearest neighbor autocovariates
Author: A. I. McLeod and M. S. Islam
Maintainer:
DESCRIPTION | 8 +--
NEWS | 2
inst/doc/Rplots.pdf | 101 ++++++++++++++++++++++-------------------------
inst/doc/nncVignette.pdf |binary
man/nnc-package.Rd | 8 +--
man/nncTest.Rd | 7 +++
6 files changed, 64 insertions(+), 62 deletions(-)
Path: /cran/updated | permanent link
Title: Pharmacometric tools for data preparation, modeling, simulation,
and reporting
Diff between MIfuns versions 4.0.17 dated 2010-08-31 and 4.0.18 dated 2010-08-31
More information about MIfuns at CRAN
Description: Pharmacometric tools for common data preparation tasks,
stratified bootstrap resampling of data sets, NONMEM control
stream creation/editing, NONMEM model execution, creation of
standard and user-defined diagnostic plots, execution and
summary of bootstrap and predictive check results,
implementation of simulations from posterior parameter
distributions, reporting of output tables and creation of a
detailed analysis log.
Author: Metrum Institute (http://metruminstitute.org): Bill Knebel,
Leonid Gibianski, Tim Bergsma
Maintainer: Tim Bergsma
DESCRIPTION | 8 ++++----
R/PLOTR.R | 41 ++++++++++++++++++++++++++---------------
man/MIfuns-package.Rd | 4 ++--
man/dataFormat.Rd | 2 --
man/dataSynthesis.Rd | 3 ---
5 files changed, 32 insertions(+), 26 deletions(-)
Path: /cran/updated | permanent link
Title: Statistical Catch-at-Age Plotting Environment
Diff between scape versions 1.0-9 dated 2009-04-21 and 1.1-0 dated 2010-08-31
More information about scape at CRAN
Description: Import and plot results from statistical catch-at-age
models, used in fisheries stock assessments.
Author: Arni Magnusson
Maintainer: Arni Magnusson
scape-1.0-9/scape/INDEX |only
scape-1.0-9/scape/inst/CHANGES |only
scape-1.0-9/scape/inst/doc/mymodel.txt |only
scape-1.1-0/scape/DESCRIPTION | 17 +++----
scape-1.1-0/scape/NEWS |only
scape-1.1-0/scape/R/importCol.R | 37 +++++++++------
scape-1.1-0/scape/R/plotB.R | 31 ++++---------
scape-1.1-0/scape/R/plotCA.R | 48 +++++++++-----------
scape-1.1-0/scape/R/plotCL.R | 48 +++++++++-----------
scape-1.1-0/scape/R/plotIndex.R | 66 ++++++++++++++--------------
scape-1.1-0/scape/R/plotLA.R | 49 +++++++++-----------
scape-1.1-0/scape/R/plotN.R | 44 ++++++++----------
scape-1.1-0/scape/R/plotSel.R | 38 +++++++---------
scape-1.1-0/scape/inst/doc/Rplots.pdf |only
scape-1.1-0/scape/inst/doc/dsc-vignette.Rnw |only
scape-1.1-0/scape/inst/doc/dsc-vignette.pdf |only
scape-1.1-0/scape/inst/doc/dsc.pdf |binary
scape-1.1-0/scape/inst/doc/gallery.Rnw |only
scape-1.1-0/scape/inst/doc/gallery.pdf |only
scape-1.1-0/scape/inst/doc/mymodel.Rnw |only
scape-1.1-0/scape/inst/doc/mymodel.pdf |only
scape-1.1-0/scape/man/importCol.Rd | 14 ++---
scape-1.1-0/scape/man/plotB.Rd | 25 ++++++----
scape-1.1-0/scape/man/plotCA.Rd | 31 +++++++------
scape-1.1-0/scape/man/plotCL.Rd | 33 ++++++++------
scape-1.1-0/scape/man/plotIndex.Rd | 39 +++++++++-------
scape-1.1-0/scape/man/plotLA.Rd | 38 +++++++++-------
scape-1.1-0/scape/man/plotN.Rd | 31 ++++++++-----
scape-1.1-0/scape/man/plotSel.Rd | 33 ++++++++------
scape-1.1-0/scape/man/scape-package.Rd | 8 +--
scape-1.1-0/scape/man/x.cod.Rd | 10 ++--
scape-1.1-0/scape/man/x.ling.Rd | 8 ++-
scape-1.1-0/scape/man/x.oreo.Rd | 9 ++-
scape-1.1-0/scape/man/x.sbw.Rd | 8 ++-
34 files changed, 349 insertions(+), 316 deletions(-)
Path: /cran/updated | permanent link
Title: For mapping global data : rworldmap
Diff between rworldmap versions 0.107 dated 2010-02-03 and 0.110 dated 2010-08-31
More information about rworldmap at CRAN
Description: Enables mapping of country level and gridded user
datasets.
Author:
Maintainer: Andy South
DESCRIPTION | 18
R/getMap.r | 16
R/joinData2Map.R |only
R/mapBars.r |only
R/mapBubbles.r | 6
R/mapCountryData.R | 50
R/mapGriddedData.r | 78
R/mapPies.r |only
R/mapPolys.R |only
R/rwmGetColours.R | 3
R/setMapExtents.R | 6
R/zzz.r | 2
inst/doc/Rplots.pdf |234591 ---------------------------------------------
inst/doc/rworldmap.Rnw | 2
inst/doc/rworldmap.pdf |binary
inst/doc/rworldmapFAQ.pdf |binary
man/joinCountryData2Map.Rd | 10
man/joinData2Map.Rd |only
man/mapBars.Rd |only
man/mapCountryData.Rd | 28
man/mapPies.Rd |only
man/mapPolys.Rd |only
man/rworldmap-package.Rd | 23
man/wrld_coarse.Rd | 14
24 files changed, 619 insertions(+), 234228 deletions(-)
Path: /cran/updated | permanent link
Title: Bayesian graphical models using MCMC
Diff between rjags versions 2.1.0-6 dated 2010-07-29 and 2.1.0-7 dated 2010-08-31
More information about rjags at CRAN
Description: Interface to the JAGS MCMC library
Author: Martyn Plummer
Maintainer: Martyn Plummer
DESCRIPTION | 8 ++++----
R/jags.R | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: Statistical inference for partially observed Markov processes
Diff between pomp versions 0.32-1 dated 2010-08-24 and 0.32-5 dated 2010-08-31
More information about pomp at CRAN
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner,
Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael
Lavine, Daniel C. Reuman
Maintainer: Aaron A. King
DESCRIPTION | 10 -
R/euler.R | 6
R/plugins.R | 14 +-
R/pomp-fun.R | 4
R/pomp.R | 8 -
R/probe.R | 11 -
R/trajectory-pomp.R | 31 ++--
data/dacca.rda |binary
data/euler.sir.rda |binary
data/gillespie.sir.rda |binary
data/ou2.rda |binary
data/ricker.rda |only
inst/ChangeLog | 64 +++++++++
inst/data-R/euler.sir.R | 8 -
inst/data-R/gillespie.sir.R | 2
inst/data-R/ou2.R | 8 -
inst/data-R/ricker.R |only
inst/doc/advanced_topics_in_pomp.Rnw | 18 +-
inst/doc/advanced_topics_in_pomp.pdf |binary
inst/doc/intro_to_pomp.Rnw | 11 -
inst/doc/intro_to_pomp.pdf |binary
inst/doc/pomp.bib | 21 ++-
inst/examples/sir.R | 8 -
inst/examples/sir.c | 226 ++++-------------------------------
man/plugins.Rd | 4
man/ricker.Rd |only
src/R_init_pomp.c |only
src/cholmodel.c | 6
src/ou2.c | 36 ++---
src/ricker.c |only
src/sir.c | 38 ++---
tests/ou2-probe-match.R | 11 +
tests/ou2-probe-match.Rout.save | 30 ++++
tests/ricker.R |only
tests/ricker.Rout.save |only
35 files changed, 261 insertions(+), 314 deletions(-)
Path: /cran/updated | permanent link
Title: Visualization using Eulerian tours and Hamiltonian
decompositions
Diff between PairViz versions 1.0 dated 2008-10-28 and 1.1 dated 2010-08-31
More information about PairViz at CRAN
Description: Eulerian tours and Hamiltonian decompositions of complete
graphs are used to ameliorate order effects in statistical
graphics.
Author: C.B. Hurley and R.W. Oldford
Maintainer: Catherine Hurley
PairViz-1.0/PairViz/man/pvpcp.Rd |only
PairViz-1.1/PairViz/DESCRIPTION | 15 -
PairViz-1.1/PairViz/NAMESPACE | 6
PairViz-1.1/PairViz/R/catpcp.R |only
PairViz-1.1/PairViz/R/desaturate_color.R |only
PairViz-1.1/PairViz/R/egraph.R | 89 +++++++-
PairViz-1.1/PairViz/R/eulerian.R | 21 +-
PairViz-1.1/PairViz/R/guidedpcp.R | 39 ++-
PairViz-1.1/PairViz/R/hamorder.R | 11 -
PairViz-1.1/PairViz/R/mcplot.R | 36 ++-
PairViz-1.1/PairViz/R/pathweights.R | 52 +++--
PairViz-1.1/PairViz/R/specialg.R |only
PairViz-1.1/PairViz/R/table_plot.R | 57 +++--
PairViz-1.1/PairViz/demo/00Index | 2
PairViz-1.1/PairViz/demo/cat_pcp.R | 104 ++--------
PairViz-1.1/PairViz/demo/demo_fns.R |only
PairViz-1.1/PairViz/demo/euler.R | 102 +++++++--
PairViz-1.1/PairViz/demo/mcplots.R | 35 ++-
PairViz-1.1/PairViz/demo/pcp.R | 280 ++++++++++++++++++---------
PairViz-1.1/PairViz/demo/rating.R |only
PairViz-1.1/PairViz/demo/stars.R | 62 ++++-
PairViz-1.1/PairViz/demo/stepwise.R | 163 +++++++++++----
PairViz-1.1/PairViz/man/desaturate_color.Rd |only
PairViz-1.1/PairViz/man/etour.Rd | 11 -
PairViz-1.1/PairViz/man/eulerian.Rd | 8
PairViz-1.1/PairViz/man/even_graph.Rd | 10
PairViz-1.1/PairViz/man/find_path.Rd | 9
PairViz-1.1/PairViz/man/guided_pcp.Rd | 18 +
PairViz-1.1/PairViz/man/hpaths.Rd | 3
PairViz-1.1/PairViz/man/mc_plot.Rd | 6
PairViz-1.1/PairViz/man/mk_complete_graph.Rd | 2
PairViz-1.1/PairViz/man/mk_even_graph.Rd | 12 -
PairViz-1.1/PairViz/man/order_best.Rd | 2
PairViz-1.1/PairViz/man/overlayci.Rd | 6
PairViz-1.1/PairViz/man/overview.Rd | 2
PairViz-1.1/PairViz/man/path_cor.Rd | 1
PairViz-1.1/PairViz/man/pathweights.Rd | 9
PairViz-1.1/PairViz/man/pcp.Rd |only
PairViz-1.1/PairViz/man/specialg.Rd |only
PairViz-1.1/PairViz/man/spreadout.Rd |only
PairViz-1.1/PairViz/man/tableplot.Rd | 11 -
41 files changed, 766 insertions(+), 418 deletions(-)
Path: /cran/updated | permanent link
Title: Multiscale Analysis for Density Functions
Diff between modehunt versions 1.0.4 dated 2009-03-04 and 1.0.5 dated 2010-08-31
More information about modehunt at CRAN
Description: Given independent and identically distributed observations
X(1), ..., X(n) from a density f, this package provides five
methods to perform a multiscale analysis about f as well as the
necessary critical values. The first method, introduced in
Duembgen and Walther (2008), provides simultaneous confidence
statements for the existence and location of local increases
(or decreases) of f, based on all intervals I(all) spanned by
any two observations X(j), X(k). The second method approximates
the latter approach by using only a subset of I(all) and is
therefore computationally much more efficient, but
asymptotically equivalent. Omitting the additive correction
term Gamma in either method offers another two approaches which
are more powerful on small scales and less powerful on large
scales, however, not asymptotically minimax optimal anymore.
Finally, the block procedure is a compromise between adding
Gamma or not, having intermediate power properties. The latter
is again asymptotically equivalent to the first and was
introduced in Rufibach and Walther (2010).
Author: Kaspar Rufibach
Maintainer: Kaspar Rufibach
modehunt-1.0.4/modehunt/CHANGES |only
modehunt-1.0.4/modehunt/R/blocks.R |only
modehunt-1.0.4/modehunt/R/criticalValuesAll.R |only
modehunt-1.0.4/modehunt/R/criticalValuesApprox.R |only
modehunt-1.0.4/modehunt/R/dlin.R |only
modehunt-1.0.4/modehunt/R/minimalIntervals.R |only
modehunt-1.0.4/modehunt/R/modeHunting.R |only
modehunt-1.0.4/modehunt/R/modeHuntingApprox.R |only
modehunt-1.0.4/modehunt/R/modeHuntingBlock.R |only
modehunt-1.0.4/modehunt/R/myRound.R |only
modehunt-1.0.4/modehunt/R/plin.R |only
modehunt-1.0.4/modehunt/R/preProcessX.R |only
modehunt-1.0.4/modehunt/R/qlin.R |only
modehunt-1.0.4/modehunt/R/rlin.R |only
modehunt-1.0.5/modehunt/DESCRIPTION | 52 ++++++++++++--------
modehunt-1.0.5/modehunt/NEWS |only
modehunt-1.0.5/modehunt/R/blocks.r |only
modehunt-1.0.5/modehunt/R/criticalValuesAll.r |only
modehunt-1.0.5/modehunt/R/criticalValuesApprox.r |only
modehunt-1.0.5/modehunt/R/dlin.r |only
modehunt-1.0.5/modehunt/R/minimalIntervals.r |only
modehunt-1.0.5/modehunt/R/modeHunting.r |only
modehunt-1.0.5/modehunt/R/modeHuntingApprox.r |only
modehunt-1.0.5/modehunt/R/modeHuntingBlock.r |only
modehunt-1.0.5/modehunt/R/myRound.r |only
modehunt-1.0.5/modehunt/R/plin.r |only
modehunt-1.0.5/modehunt/R/preProcessX.r |only
modehunt-1.0.5/modehunt/R/qlin.r |only
modehunt-1.0.5/modehunt/R/rlin.r |only
modehunt-1.0.5/modehunt/data/cvModeAll.rda |binary
modehunt-1.0.5/modehunt/data/cvModeApprox.rda |binary
modehunt-1.0.5/modehunt/data/cvModeBlock.rda |binary
modehunt-1.0.5/modehunt/man/blocks.Rd | 10 +--
modehunt-1.0.5/modehunt/man/criticalValuesAll.Rd | 6 +-
modehunt-1.0.5/modehunt/man/criticalValuesApprox.Rd | 8 +--
modehunt-1.0.5/modehunt/man/cvModeAll.Rd | 4 -
modehunt-1.0.5/modehunt/man/cvModeApprox.Rd | 4 -
modehunt-1.0.5/modehunt/man/cvModeBlock.Rd | 4 -
modehunt-1.0.5/modehunt/man/lin.Rd | 8 +--
modehunt-1.0.5/modehunt/man/minimalIntervals.Rd | 6 +-
modehunt-1.0.5/modehunt/man/modeHunting.Rd | 6 +-
modehunt-1.0.5/modehunt/man/modeHuntingApprox.Rd | 6 +-
modehunt-1.0.5/modehunt/man/modeHuntingBlock.Rd | 6 +-
modehunt-1.0.5/modehunt/man/modehunt-package.Rd | 31 ++++++++---
modehunt-1.0.5/modehunt/man/myRound.Rd | 2
modehunt-1.0.5/modehunt/man/preProcessX.Rd | 2
46 files changed, 89 insertions(+), 66 deletions(-)
Path: /cran/updated | permanent link
Title: Least squares, logistic, and Cox-regression with ordered
predictors
Diff between OrdFacReg versions 1.0.1 dated 2009-09-28 and 1.0.2 dated 2010-08-31
More information about OrdFacReg at CRAN
Description: In biomedical studies, researchers are often interested in
assessing the association between one or more ordinal
explanatory variables and an outcome variable, at the same time
adjusting for covariates of any type. The outcome variable may
be continuous, binary, or represent censored survival times. In
the absence of a precise knowledge of the response function,
using monotonicity constraints on the ordinal variables
improves efficiency in estimating parameters, especially when
sample sizes are small. This package implements an active set
algorithm that efficiently computes such estimators.
Author: Kaspar Rufibach
Maintainer: Kaspar Rufibach
OrdFacReg-1.0.1/OrdFacReg/CHANGES |only
OrdFacReg-1.0.1/OrdFacReg/R/Abeta.R |only
OrdFacReg-1.0.1/OrdFacReg/R/LSEsubspace.R |only
OrdFacReg-1.0.1/OrdFacReg/R/constraintMats.R |only
OrdFacReg-1.0.1/OrdFacReg/R/coxDeriv.R |only
OrdFacReg-1.0.1/OrdFacReg/R/coxLoglik.R |only
OrdFacReg-1.0.1/OrdFacReg/R/coxSubspace.R |only
OrdFacReg-1.0.1/OrdFacReg/R/dummy.R |only
OrdFacReg-1.0.1/OrdFacReg/R/expandBeta.R |only
OrdFacReg-1.0.1/OrdFacReg/R/indexDummy.R |only
OrdFacReg-1.0.1/OrdFacReg/R/lmLSE.R |only
OrdFacReg-1.0.1/OrdFacReg/R/lmSS.R |only
OrdFacReg-1.0.1/OrdFacReg/R/logRegDeriv.R |only
OrdFacReg-1.0.1/OrdFacReg/R/logRegLoglik.R |only
OrdFacReg-1.0.1/OrdFacReg/R/logRegSubspace.R |only
OrdFacReg-1.0.1/OrdFacReg/R/maxStep.R |only
OrdFacReg-1.0.1/OrdFacReg/R/ordFacReg.R |only
OrdFacReg-1.0.1/OrdFacReg/R/ordFacRegCox.R |only
OrdFacReg-1.0.1/OrdFacReg/R/phi_jl.R |only
OrdFacReg-1.0.1/OrdFacReg/R/prepareData.R |only
OrdFacReg-1.0.1/OrdFacReg/R/setminus.R |only
OrdFacReg-1.0.1/OrdFacReg/R/shrinkBeta.R |only
OrdFacReg-1.0.2/OrdFacReg/DESCRIPTION | 8 ++++----
OrdFacReg-1.0.2/OrdFacReg/NEWS |only
OrdFacReg-1.0.2/OrdFacReg/R/Abeta.r |only
OrdFacReg-1.0.2/OrdFacReg/R/LSEsubspace.r |only
OrdFacReg-1.0.2/OrdFacReg/R/constraintMats.r |only
OrdFacReg-1.0.2/OrdFacReg/R/coxDeriv.r |only
OrdFacReg-1.0.2/OrdFacReg/R/coxLoglik.r |only
OrdFacReg-1.0.2/OrdFacReg/R/coxSubspace.r |only
OrdFacReg-1.0.2/OrdFacReg/R/dummy.r |only
OrdFacReg-1.0.2/OrdFacReg/R/expandBeta.r |only
OrdFacReg-1.0.2/OrdFacReg/R/indexDummy.r |only
OrdFacReg-1.0.2/OrdFacReg/R/lmLSE.r |only
OrdFacReg-1.0.2/OrdFacReg/R/lmSS.r |only
OrdFacReg-1.0.2/OrdFacReg/R/logRegDeriv.r |only
OrdFacReg-1.0.2/OrdFacReg/R/logRegLoglik.r |only
OrdFacReg-1.0.2/OrdFacReg/R/logRegSubspace.r |only
OrdFacReg-1.0.2/OrdFacReg/R/maxStep.r |only
OrdFacReg-1.0.2/OrdFacReg/R/ordFacReg.r |only
OrdFacReg-1.0.2/OrdFacReg/R/ordFacRegCox.r |only
OrdFacReg-1.0.2/OrdFacReg/R/phi_jl.r |only
OrdFacReg-1.0.2/OrdFacReg/R/prepareData.r |only
OrdFacReg-1.0.2/OrdFacReg/R/setminus.r |only
OrdFacReg-1.0.2/OrdFacReg/R/shrinkBeta.r |only
OrdFacReg-1.0.2/OrdFacReg/man/internal.Rd | 10 +++++-----
OrdFacReg-1.0.2/OrdFacReg/man/ordFacReg-package.Rd | 8 ++++----
OrdFacReg-1.0.2/OrdFacReg/man/ordFacReg.Rd | 10 +++++-----
OrdFacReg-1.0.2/OrdFacReg/man/ordFacRegCox.Rd | 8 ++++----
OrdFacReg-1.0.2/OrdFacReg/man/prepareData.Rd | 6 +++---
50 files changed, 25 insertions(+), 25 deletions(-)
Path: /cran/updated | permanent link
Title: Pharmacometric tools for data preparation, modeling, simulation,
and reporting
Diff between MIfuns versions 4.0.16 dated 2010-08-28 and 4.0.17 dated 2010-08-31
More information about MIfuns at CRAN
Description: Pharmacometric tools for common data preparation tasks,
stratified bootstrap resampling of data sets, NONMEM control
stream creation/editing, NONMEM model execution, creation of
standard and user-defined diagnostic plots, execution and
summary of bootstrap and predictive check results,
implementation of simulations from posterior parameter
distributions, reporting of output tables and creation of a
detailed analysis log.
Author: Metrum Institute (http://metruminstitute.org): Bill Knebel,
Leonid Gibianski, Tim Bergsma
Maintainer: Tim Bergsma
DESCRIPTION | 12
NAMESPACE |only
R/NONR.R | 2
R/PLOTR.R | 2
R/covariatePlots.R | 2
R/diagnosticPlots.R | 1
R/lookup.R | 1
R/params.R | 1
R/plot.nm.R | 10
R/read.cwres.data.R | 6
R/runCommand.R | 2
R/runNonmem.R | 2
R/runlog.R | 1
R/simpar.R | 1
R/xyplot.ext.R | 2
R/zzz.R | 28
inst/sample/nonmem/1005.boot/CombRunLog.csv | 1200 -
inst/sample/nonmem/1005.boot/log.csv |17400 ++++++++++++++--------------
inst/sample/nonmem/1005/1005.ctl | 2
inst/sample/nonmem/1005/1005.lst | 67
inst/sample/nonmem/1005/diagnostics.pdf | 242
inst/sample/nonmem/1105/1105.ctl | 9
inst/sample/nonmem/1105/1105.lst | 31
inst/sample/nonmem/ctl/1005.ctl | 2
inst/sample/nonmem/ctl/1105.ctl | 19
inst/sample/script/assemble.pdf |binary
inst/sample/script/assemble.tex | 3
inst/sample/script/model-bivariate.pdf | 4
inst/sample/script/model-covplot.pdf | 4
inst/sample/script/model-diamondBack.pdf | 4
inst/sample/script/model-stripplot.pdf | 4
inst/sample/script/model.R | 23
inst/sample/script/model.Rnw | 23
inst/sample/script/model.pdf |binary
inst/sample/script/model.tex | 184
inst/test/nm6/out/1/1.lst | 10
inst/test/nm6/out/1/1.tab | 2
inst/test/nm6/out/1/TestPlots.pdf | 4
inst/test/nm6/out/1/cwtab1 | 2
inst/test/nm6/out/1/diagnostics.pdf | 164
inst/test/nm6/out/1001.boot/1001.lst | 8
inst/test/nm6/out/1001/1001.lst | 6
inst/test/nm6/out/1001/TestPlots.pdf | 4
inst/test/nm6/out/1001/diagnostics.pdf | 164
inst/test/nm6/out/1002.boot/1002.lst | 12
inst/test/nm6/out/1002/1002.lst | 12
inst/test/nm6/out/1002/TestPlots.pdf | 4
inst/test/nm6/out/1002/diagnostics.pdf | 164
inst/test/nm6/out/1003.boot/1003.lst | 6
inst/test/nm6/out/1003/1003.lst | 6
inst/test/nm6/out/1003/TestPlots.pdf | 4
inst/test/nm6/out/1003/diagnostics.pdf | 164
inst/test/nm6/out/2/2.lst | 4
inst/test/nm6/out/2/2.tab | 2
inst/test/nm6/out/2/TestPlots.pdf | 4
inst/test/nm6/out/2/cwtab1 | 2
inst/test/nm6/out/2/diagnostics.pdf | 254
inst/test/nm7/out/1/1.lst | 24
inst/test/nm7/out/1/diagnostics.pdf | 164
inst/test/nm7/out/1/nmprd4p.mod |binary
inst/test/nm7/out/1001.boot/1001.lst | 22
inst/test/nm7/out/1001.boot/nmprd4p.mod |binary
inst/test/nm7/out/1001/1001.lst | 22
inst/test/nm7/out/1001/diagnostics.pdf | 164
inst/test/nm7/out/1001/nmprd4p.mod |binary
inst/test/nm7/out/1002.boot/1002.lst | 22
inst/test/nm7/out/1002.boot/nmprd4p.mod |binary
inst/test/nm7/out/1002/1002.lst | 24
inst/test/nm7/out/1002/diagnostics.pdf | 164
inst/test/nm7/out/1002/nmprd4p.mod |binary
inst/test/nm7/out/1003.boot/1003.lst | 20
inst/test/nm7/out/1003.boot/nmprd4p.mod |binary
inst/test/nm7/out/1003/1003.lst | 24
inst/test/nm7/out/1003/diagnostics.pdf | 164
inst/test/nm7/out/1003/nmprd4p.mod |binary
inst/test/nm7/out/1003/profile.pdf | 4
inst/test/nm7/out/2/2.lst | 20
inst/test/nm7/out/2/diagnostics.pdf | 256
inst/test/nm7/out/2/nmprd4p.mod |binary
inst/test/nm7/out/bootlog.csv | 6
inst/test/nm7/out/runlog.csv | 6
man/MIfuns-package.Rd | 4
man/NONR.Rd | 6
man/PLOTR.Rd | 3
man/accept.Rd | 2
man/acceptance.Rd | 2
man/diagnosticPlots.Rd | 2
man/lookup.Rd | 2
man/panel.densitystrip.Rd | 5
man/panel.hist.Rd | 2
man/panel.stratify.Rd | 2
man/params.Rd | 2
man/partab.Rd | 2
man/plot.nm.Rd | 3
man/rlog.Rd | 3
man/snap.Rd | 1
96 files changed, 10457 insertions(+), 10986 deletions(-)
Path: /cran/updated | permanent link
Title: genome-wide SNP association analysis
Diff between GenABEL versions 1.6-2 dated 2010-08-08 and 1.6-4 dated 2010-08-31
More information about GenABEL at CRAN
Description: a package for genome-wide association analysis between
quantitative or binary traits and single-nucleiotide
polymorphisms (SNPs).
Author: Yurii Aulchenko, Maksim Struchalin
Maintainer: Yurii Aulchenko
GenABEL-1.6-2/GenABEL/R/ss_slot_wrappers.R |only
GenABEL-1.6-2/GenABEL/man/phdata.Rd |only
GenABEL-1.6-4/GenABEL/CHANGES.LOG | 19
GenABEL-1.6-4/GenABEL/DESCRIPTION | 8
GenABEL-1.6-4/GenABEL/NAMESPACE | 38
GenABEL-1.6-4/GenABEL/R/GenABEL-package.R | 3
GenABEL-1.6-4/GenABEL/R/add.plot.R | 31
GenABEL-1.6-4/GenABEL/R/ccfast.R | 70 +
GenABEL-1.6-4/GenABEL/R/check.marker.R | 47 +
GenABEL-1.6-4/GenABEL/R/descriptives.scan.R | 46 -
GenABEL-1.6-4/GenABEL/R/descriptives.trait.R | 8
GenABEL-1.6-4/GenABEL/R/egscore.R | 76 +
GenABEL-1.6-4/GenABEL/R/emp.ccfast.R | 2
GenABEL-1.6-4/GenABEL/R/emp.grammar.R | 2
GenABEL-1.6-4/GenABEL/R/emp.mmscore.R | 2
GenABEL-1.6-4/GenABEL/R/emp.qtscore.R | 2
GenABEL-1.6-4/GenABEL/R/export.merlin.R | 40 -
GenABEL-1.6-4/GenABEL/R/export.plink.R |only
GenABEL-1.6-4/GenABEL/R/formetascore.R | 71 +
GenABEL-1.6-4/GenABEL/R/grammar.R | 9
GenABEL-1.6-4/GenABEL/R/ibs.R | 4
GenABEL-1.6-4/GenABEL/R/mlreg.R | 60 +
GenABEL-1.6-4/GenABEL/R/mmscore.R | 65 +
GenABEL-1.6-4/GenABEL/R/plot.scan.gwaa.R | 44 -
GenABEL-1.6-4/GenABEL/R/polygenic.R | 8
GenABEL-1.6-4/GenABEL/R/qtscore.R | 153 ++-
GenABEL-1.6-4/GenABEL/R/scan.haplo.R | 22
GenABEL-1.6-4/GenABEL/R/snp.subset.R | 14
GenABEL-1.6-4/GenABEL/R/ss.R | 936 ++++++++++++++++++------
GenABEL-1.6-4/GenABEL/R/summary.gwaa.data.R | 11
GenABEL-1.6-4/GenABEL/R/summary.scan.gwaa.R |only
GenABEL-1.6-4/GenABEL/R/summary.snp.data.R | 9
GenABEL-1.6-4/GenABEL/R/zzz.R | 2
GenABEL-1.6-4/GenABEL/TODO | 2
GenABEL-1.6-4/GenABEL/data/ge03d2.clean.RData |binary
GenABEL-1.6-4/GenABEL/data/ge03d2ex.RData |binary
GenABEL-1.6-4/GenABEL/data/ge03d2ex.clean.RData |binary
GenABEL-1.6-4/GenABEL/demo/ge03d2.R | 2
GenABEL-1.6-4/GenABEL/demo/srdta.R | 2
GenABEL-1.6-4/GenABEL/demo/srdtawin.R | 2
GenABEL-1.6-4/GenABEL/man/GenABEL-package.Rd | 3
GenABEL-1.6-4/GenABEL/man/check.marker.Rd | 4
GenABEL-1.6-4/GenABEL/man/descriptives.scan.Rd | 3
GenABEL-1.6-4/GenABEL/man/egscore.old.Rd | 10
GenABEL-1.6-4/GenABEL/man/emp.ccfast.Rd | 8
GenABEL-1.6-4/GenABEL/man/emp.qtscore.Rd | 2
GenABEL-1.6-4/GenABEL/man/estlambda.Rd | 2
GenABEL-1.6-4/GenABEL/man/export.merlin.Rd | 9
GenABEL-1.6-4/GenABEL/man/export.plink.Rd |only
GenABEL-1.6-4/GenABEL/man/gwaa.data-class.Rd | 14
GenABEL-1.6-4/GenABEL/man/ibs.Rd | 3
GenABEL-1.6-4/GenABEL/man/plot.scan.gwaa.Rd | 4
GenABEL-1.6-4/GenABEL/man/qtscore.Rd | 4
GenABEL-1.6-4/GenABEL/man/qvaluebh95.Rd | 4
GenABEL-1.6-4/GenABEL/man/scan.glm.Rd | 12
GenABEL-1.6-4/GenABEL/man/scan.gwaa-class.Rd | 50 +
GenABEL-1.6-4/GenABEL/man/snp.data-class.Rd | 83 +-
GenABEL-1.6-4/GenABEL/man/summary.scan.gwaa.Rd |only
GenABEL-1.6-4/GenABEL/man/summary.snp.data.Rd | 8
59 files changed, 1472 insertions(+), 561 deletions(-)
Path: /cran/updated | permanent link
Title: TK Rplot
Diff between tkrplot versions 0.0-18 dated 2008-04-01 and 0.0-19 dated 2010-08-31
More information about tkrplot at CRAN
Description: simple mechanism for placing R graphics in a Tk widget
Author: Luke Tierney
Maintainer: Luke Tierney
DESCRIPTION | 6 ++++--
src/Makevars.win | 2 +-
2 files changed, 5 insertions(+), 3 deletions(-)
Path: /cran/updated | permanent link
Title: Testthat code. Tools to make testing fun :)
Diff between testthat versions 0.2 dated 2010-07-25 and 0.3 dated 2010-08-31
More information about testthat at CRAN
Description: A testing package specifically tailored for R that's fun,
flexible and easy to set up.
Author: Hadley Wickham
Maintainer: Hadley Wickham
testthat-0.2/testthat/ideas.r |only
testthat-0.2/testthat/load.r |only
testthat-0.2/testthat/man/create_traceback.Rd |only
testthat-0.2/testthat/man/try_capture_stack.Rd |only
testthat-0.2/testthat/tests/test-basics.r |only
testthat-0.2/testthat/tests/test-failure.r |only
testthat-0.2/testthat/tests/test-reporter.r |only
testthat-0.2/testthat/tests/test-throws-error.r |only
testthat-0.2/testthat/tests/test-watcher.r |only
testthat-0.3/testthat/DESCRIPTION | 13 -
testthat-0.3/testthat/NAMESPACE | 25 +-
testthat-0.3/testthat/NEWS | 31 +++
testthat-0.3/testthat/R/aaa-classes.r | 2
testthat-0.3/testthat/R/auto-test.r | 6
testthat-0.3/testthat/R/colour-text.r | 10 -
testthat-0.3/testthat/R/expect-that.r | 16 +
testthat-0.3/testthat/R/expectation.r | 2
testthat-0.3/testthat/R/expectations.r | 209 ++++++++++++++++++++----
testthat-0.3/testthat/R/library.r | 4
testthat-0.3/testthat/R/reporter-minimal.r | 1
testthat-0.3/testthat/R/reporter-stop.r | 34 +++
testthat-0.3/testthat/R/reporter-summary.r | 21 +-
testthat-0.3/testthat/R/reporter-zzz.r | 8
testthat-0.3/testthat/R/reporter.r | 11 -
testthat-0.3/testthat/R/test-files.r | 29 ++-
testthat-0.3/testthat/R/test-package.r |only
testthat-0.3/testthat/R/test-that.r | 61 +------
testthat-0.3/testthat/R/utils.r |only
testthat-0.3/testthat/R/watcher.r | 2
testthat-0.3/testthat/README.md |only
testthat-0.3/testthat/TODO | 5
testthat-0.3/testthat/inst |only
testthat-0.3/testthat/man/equals.Rd | 10 -
testthat-0.3/testthat/man/expect_that.Rd | 7
testthat-0.3/testthat/man/gives_warning.Rd |only
testthat-0.3/testthat/man/is_a.Rd | 4
testthat-0.3/testthat/man/is_equivalent_to.Rd | 12 +
testthat-0.3/testthat/man/is_false.Rd | 4
testthat-0.3/testthat/man/is_identical_to.Rd | 10 -
testthat-0.3/testthat/man/is_true.Rd | 4
testthat-0.3/testthat/man/matches.Rd | 13 +
testthat-0.3/testthat/man/prints_text.Rd | 6
testthat-0.3/testthat/man/shows_message.Rd |only
testthat-0.3/testthat/man/source_dir.Rd | 3
testthat-0.3/testthat/man/test_dir.Rd | 3
testthat-0.3/testthat/man/test_package.Rd |only
testthat-0.3/testthat/man/test_that.Rd | 4
testthat-0.3/testthat/man/throws_error.Rd | 7
testthat-0.3/testthat/tests/test-all.R |only
49 files changed, 409 insertions(+), 168 deletions(-)
Path: /cran/updated | permanent link
Title: Smooth Estimation of GPD Shape Parameter
Diff between smoothtail versions 1.1.4 dated 2009-10-15 and 2.0.0 dated 2010-08-31
More information about smoothtail at CRAN
Description: Given independent and identically distributed observations
X(1), ..., X(n) from a Generalized Pareto distribution with
shape parameter gamma in [-1,0], this package offers several
estimates to compute estimates of gamma. The estimates are
based on the principle of replacing the order statistics by
quantiles of a distribution function based on a log--concave
density function. This procedure is justified by the fact that
the GPD density is log--concave for gamma in [-1,0].
Author: Kaspar Rufibach
Maintainer: Kaspar Rufibach
smoothtail-1.1.4/smoothtail/R/dgpd.R |only
smoothtail-1.1.4/smoothtail/R/falk.R |only
smoothtail-1.1.4/smoothtail/R/falkMVUE.R |only
smoothtail-1.1.4/smoothtail/R/pgpd.R |only
smoothtail-1.1.4/smoothtail/R/pickands.R |only
smoothtail-1.1.4/smoothtail/R/qgpd.R |only
smoothtail-1.1.4/smoothtail/R/rgpd.R |only
smoothtail-2.0.0/smoothtail/CHANGES | 4 +
smoothtail-2.0.0/smoothtail/DESCRIPTION | 10 +--
smoothtail-2.0.0/smoothtail/R/dgpd.r |only
smoothtail-2.0.0/smoothtail/R/falk.r |only
smoothtail-2.0.0/smoothtail/R/falkMVUE.r |only
smoothtail-2.0.0/smoothtail/R/generalizedPick.r | 56 ++++++++++--------
smoothtail-2.0.0/smoothtail/R/lambdaGenPick.r | 22 +++----
smoothtail-2.0.0/smoothtail/R/pgpd.r |only
smoothtail-2.0.0/smoothtail/R/pickands.r |only
smoothtail-2.0.0/smoothtail/R/qgpd.r |only
smoothtail-2.0.0/smoothtail/R/rgpd.r |only
smoothtail-2.0.0/smoothtail/man/falk.Rd | 15 +++-
smoothtail-2.0.0/smoothtail/man/falkMVUE.Rd | 15 +++-
smoothtail-2.0.0/smoothtail/man/generalizedPick.Rd | 15 +++-
smoothtail-2.0.0/smoothtail/man/pickands.Rd | 14 +++-
smoothtail-2.0.0/smoothtail/man/smoothtail-package.Rd | 44 +++++++-------
23 files changed, 118 insertions(+), 77 deletions(-)
Path: /cran/updated | permanent link
Title: Modeling evolution in paleontological time-series
Diff between paleoTS versions 0.3-2 dated 2010-05-08 and 0.3-3 dated 2010-08-31
More information about paleoTS at CRAN
Description: This package facilitates analysis of paleontological
sequences of trait values from an evolving lineage. Functions
are provided to fit, using maximum likelihood, evolutionary
models including unbiased random walks, directional evolution,
stasis, and Ornstein-Uhlenbeck models. Newly added since
version (0.3-1) are functions to analyze punctuations and
models in which evolutionary dynamics change over the course of
a time-series of trait values.
Author: Gene Hunt
Maintainer: Gene Hunt
DESCRIPTION | 10 +++++-----
R/plot.paleoTS.R | 2 +-
man/stickleback.Rd | 8 +++++---
3 files changed, 11 insertions(+), 9 deletions(-)
Path: /cran/updated | permanent link
Title: Robust Loss Development Using MCMC
Diff between lossDev versions 0.9.3 dated 2010-07-06 and 0.9.4 dated 2010-08-31
More information about lossDev at CRAN
Description: Loss Development for Insurance Triangles
Author: Christopher W. Laws, Frank A. Schmid
Maintainer: Christopher W. Laws
DESCRIPTION | 6
R/AnnualAggLossDevModelInput.R | 1
R/AnnualAggLossDevModelOutput.R | 183
R/AnnualAggLossDevModelOutputWithZeros.R | 33
R/BreakAnnualAggLossDevModelInput.R | 2
R/BreakAnnualAggLossDevModelOutput.R | 28
R/LossDevModelInput.R | 3
R/LossDevModelOutput.R | 1
R/StandardAnnualAggLossDevModelInput.R | 2
R/StandardAnnualAggLossDevModelOutput.R | 18
inst/doc/Rplots.pdf |429380 +++++-----
inst/doc/charts/lossDev-breakAutoregressiveParameter.eps |18466
inst/doc/charts/lossDev-breakAutoregressiveParameter.pdf |18894
inst/doc/charts/lossDev-breakCalendarYearEffect.eps | 42
inst/doc/charts/lossDev-breakCalendarYearEffect.pdf | 78
inst/doc/charts/lossDev-breakCalendarYearEffectErrors.eps | 90
inst/doc/charts/lossDev-breakCalendarYearEffectErrors.pdf | 124
inst/doc/charts/lossDev-breakCalendarYearEffectErrorsAR1WithAR1.eps | 88
inst/doc/charts/lossDev-breakCalendarYearEffectErrorsAR1WithAR1.pdf | 135
inst/doc/charts/lossDev-breakConsumptionPath.eps | 162
inst/doc/charts/lossDev-breakConsumptionPath.pdf | 152
inst/doc/charts/lossDev-breakFirstYearInNewRegime.eps | 6
inst/doc/charts/lossDev-breakFirstYearInNewRegime.pdf | 49
inst/doc/charts/lossDev-breakNumberOfKnots.eps | 24
inst/doc/charts/lossDev-breakNumberOfKnots.pdf | 70
inst/doc/charts/lossDev-breakPredictedInc.eps | 1206
inst/doc/charts/lossDev-breakPredictedInc.pdf | 1244
inst/doc/charts/lossDev-breakPredictedIncWithZeros.eps | 1208
inst/doc/charts/lossDev-breakPredictedIncWithZeros.pdf | 1257
inst/doc/charts/lossDev-breakRateOfDecay.eps | 538
inst/doc/charts/lossDev-breakRateOfDecay.pdf | 536
inst/doc/charts/lossDev-breakResiDevYearStandardized.eps | 442
inst/doc/charts/lossDev-breakResiDevYearStandardized.pdf | 436
inst/doc/charts/lossDev-breakResiDevYearUnStandardized.eps | 432
inst/doc/charts/lossDev-breakResiDevYearUnStandardized.pdf | 432
inst/doc/charts/lossDev-breakSkew.eps |18515
inst/doc/charts/lossDev-breakSkew.pdf |18907
inst/doc/charts/lossDev-breakfinalCumulativeDiff.eps | 492
inst/doc/charts/lossDev-breakfinalCumulativeDiff.pdf | 840
inst/doc/charts/lossDev-plotBreakConsumptionPathTracePostBreak.eps |53414 -
inst/doc/charts/lossDev-plotBreakConsumptionPathTracePostBreak.pdf |54123 -
inst/doc/charts/lossDev-plotBreakConsumptionPathTracePreBreak.eps |53378 -
inst/doc/charts/lossDev-plotBreakConsumptionPathTracePreBreak.pdf |54146 -
inst/doc/charts/lossDev-plotStandardConsumptionPathTrace.eps |52695 -
inst/doc/charts/lossDev-plotStandardConsumptionPathTrace.pdf |54101 -
inst/doc/charts/lossDev-plotStandardexposureGrowthTrace.eps |52927 -
inst/doc/charts/lossDev-plotStandardexposureGrowthTrace.pdf |54120 -
inst/doc/charts/lossDev-standardCalendarYearEffect.eps | 98
inst/doc/charts/lossDev-standardCalendarYearEffect.pdf | 140
inst/doc/charts/lossDev-standardCalendarYearEffectErrors.eps | 76
inst/doc/charts/lossDev-standardCalendarYearEffectErrors.pdf | 108
inst/doc/charts/lossDev-standardConsumptionPath.eps | 84
inst/doc/charts/lossDev-standardConsumptionPath.pdf | 100
inst/doc/charts/lossDev-standardDegreesOfFreedom.eps |18519
inst/doc/charts/lossDev-standardDegreesOfFreedom.pdf |18900
inst/doc/charts/lossDev-standardExposureYearGrowth.eps | 58
inst/doc/charts/lossDev-standardExposureYearGrowth.pdf | 98
inst/doc/charts/lossDev-standardNumberOfKnots.eps | 49
inst/doc/charts/lossDev-standardNumberOfKnots.pdf | 82
inst/doc/charts/lossDev-standardPredictedCumul.eps | 338
inst/doc/charts/lossDev-standardPredictedCumul.pdf | 390
inst/doc/charts/lossDev-standardPredictedInc.eps | 468
inst/doc/charts/lossDev-standardPredictedInc.pdf | 500
inst/doc/charts/lossDev-standardQQ.eps | 340
inst/doc/charts/lossDev-standardQQ.pdf | 382
inst/doc/charts/lossDev-standardRateOfDecay.eps | 82
inst/doc/charts/lossDev-standardRateOfDecay.pdf | 96
inst/doc/charts/lossDev-standardResiByCalYear.eps | 190
inst/doc/charts/lossDev-standardResiByCalYear.pdf | 204
inst/doc/charts/lossDev-standardResiByDevYear.eps | 190
inst/doc/charts/lossDev-standardResiByDevYear.pdf | 204
inst/doc/charts/lossDev-standardResiByExpYear.eps | 190
inst/doc/charts/lossDev-standardResiByExpYear.pdf | 204
inst/doc/charts/lossDev-standardSTDvsDev.eps | 84
inst/doc/charts/lossDev-standardSTDvsDev.pdf | 116
inst/doc/charts/lossDev-standardSkew.eps |18526
inst/doc/charts/lossDev-standardSkew.pdf |18876
inst/doc/charts/lossDev-standardStochInflation.eps | 246
inst/doc/charts/lossDev-standardStochInflation.pdf | 294
inst/doc/charts/lossDev-standardStochInflationRhoParameter.eps |18463
inst/doc/charts/lossDev-standardStochInflationRhoParameter.pdf |18882
inst/doc/charts/lossDev-standardStochInflationStationaryMean.eps |18147
inst/doc/charts/lossDev-standardStochInflationStationaryMean.pdf |18502
inst/doc/charts/lossDev-standardfinalCumulativeDiff.eps | 280
inst/doc/charts/lossDev-standardfinalCumulativeDiff.pdf | 486
inst/doc/charts/lossDev-zeroPayments5050.eps |18418
inst/doc/charts/lossDev-zeroPayments5050.pdf |18520
inst/doc/charts/lossDev-zeroPaymentsCurve.eps | 418
inst/doc/charts/lossDev-zeroPaymentsCurve.pdf | 469
inst/doc/charts/lossDev-zeroPaymentsScale.eps |18338
inst/doc/charts/lossDev-zeroPaymentsScale.pdf |18521
inst/doc/lossDev.Rnw | 2
inst/doc/lossDev.pdf |binary
man/AnnualAggLossDevModelOutputWithZeros-class.Rd | 6
man/BreakAnnualAggLossDevModelInput-class.Rd | 4
man/BreakAnnualAggLossDevModelOutputWithZeros-class.Rd | 4
man/QQPlot,AnnualAggLossDevModelOutput-method.Rd | 4
man/QQPlot.Rd | 5
man/StandardAnnualAggLossDevModelInput-class.Rd | 4
man/StandardAnnualAggLossDevModelOutputWithZeros-class.Rd | 4
man/autoregressiveParameter,AnnualAggLossDevModelOutput-method.Rd | 8
man/autoregressiveParameter.Rd | 9
man/calendarYearEffect,AnnualAggLossDevModelOutput-method.Rd | 10
man/calendarYearEffect.Rd | 11
man/calendarYearEffectAutoregressiveParameter,AnnualAggLossDevModelOutput-method.Rd | 8
man/calendarYearEffectAutoregressiveParameter.Rd | 9
man/calendarYearEffectErrorTracePlot,AnnualAggLossDevModelOutput-method.Rd | 4
man/calendarYearEffectErrorTracePlot.Rd | 5
man/calendarYearEffectErrors,AnnualAggLossDevModelOutput-method.Rd | 10
man/calendarYearEffectErrors.Rd | 11
man/consumptionPath,BreakAnnualAggLossDevModelOutput-method.Rd | 4
man/consumptionPath,StandardAnnualAggLossDevModelOutput-method.Rd | 4
man/consumptionPath.Rd | 7
man/consumptionPathTracePlot,BreakAnnualAggLossDevModelOutput-method.Rd | 4
man/consumptionPathTracePlot,StandardAnnualAggLossDevModelOutput-method.Rd | 4
man/consumptionPathTracePlot.Rd | 5
man/degreesOfFreedom.Rd | 1
man/exposureGrowth,AnnualAggLossDevModelOutput-method.Rd | 4
man/exposureGrowth.Rd | 5
man/exposureGrowthAutoregressiveParameter.Rd | 1
man/exposureGrowthTracePlot,AnnualAggLossDevModelOutput-method.Rd | 4
man/exposureGrowthTracePlot.Rd | 5
man/finalCumulativeDiff,AnnualAggLossDevModelOutputWithZeros-method.Rd | 6
man/finalCumulativeDiff.Rd | 1
man/firstYearInNewRegime,BreakAnnualAggLossDevModelOutput-method.Rd | 4
man/firstYearInNewRegime.Rd | 5
man/firstYearInNewRegimeTracePlot,BreakAnnualAggLossDevModelOutput-method.Rd | 4
man/firstYearInNewRegimeTracePlot.Rd | 5
man/getJagsData.Rd | 1
man/getJagsInits.Rd | 1
man/getModelOutputNodes.Rd | 1
man/getTriDim.Rd | 1
man/gompertzParameters,AnnualAggLossDevModelOutputWithZeros-method.Rd | 1
man/gompertzParameters.Rd | 1
man/lossDevelopmentFactors,AnnualAggLossDevModelOutput-method.Rd | 4
man/lossDevelopmentFactors.Rd | 5
man/mcmcACF,BreakAnnualAggLossDevModelOutput-method.Rd | 4
man/mcmcACF,StandardAnnualAggLossDevModelOutput-method.Rd | 4
man/mcmcACF.Rd | 5
man/meanExposureGrowth.Rd | 1
man/numberOfKnots,BreakAnnualAggLossDevModelOutput-method.Rd | 6
man/numberOfKnots,StandardAnnualAggLossDevModelOutput-method.Rd | 6
man/numberOfKnots.Rd | 7
man/predictedPayments,AnnualAggLossDevModelOutputWithZeros-method.Rd | 4
man/predictedPayments.Rd | 1
man/probablityOfPayment.Rd | 1
man/rateOfDecay,BreakAnnualAggLossDevModelOutput-method.Rd | 6
man/rateOfDecay,StandardAnnualAggLossDevModelOutput-method.Rd | 6
man/rateOfDecay.Rd | 9
man/rateOfDecayTracePlot,BreakAnnualAggLossDevModelOutput-method.Rd | 4
man/rateOfDecayTracePlot,StandardAnnualAggLossDevModelOutput-method.Rd | 4
man/rateOfDecayTracePlot.Rd | 5
man/runLossDevModel.Rd | 1
man/scaleParameter.Rd | 1
man/skewnessParameter.Rd | 1
man/standardDeviationForScaleInnovation,AnnualAggLossDevModelOutput-method.Rd | 6
man/standardDeviationForScaleInnovation.Rd | 5
man/standardDeviationOfCalendarYearEffect,AnnualAggLossDevModelOutput-method.Rd | 8
man/standardDeviationOfCalendarYearEffect.Rd | 9
man/standardDeviationOfExposureGrowth,AnnualAggLossDevModelOutput-method.Rd | 6
man/standardDeviationOfExposureGrowth.Rd | 1
man/standardDeviationVsDevelopmentTime.Rd | 1
man/stochasticInflation,AnnualAggLossDevModelOutput-method.Rd | 6
man/stochasticInflation.Rd | 7
man/stochasticInflationRhoParameter,AnnualAggLossDevModelOutput-method.Rd | 6
man/stochasticInflationRhoParameter.Rd | 7
man/stochasticInflationStationaryMean,AnnualAggLossDevModelOutput-method.Rd | 6
man/stochasticInflationStationaryMean.Rd | 7
man/tailFactor,BreakAnnualAggLossDevModelOutput-method.Rd | 4
man/tailFactor,BreakAnnualAggLossDevModelOutputWithZeros-method.Rd | 10
man/tailFactor,StandardAnnualAggLossDevModelOutput-method.Rd | 4
man/tailFactor,StandardAnnualAggLossDevModelOutputWithZeros-method.Rd | 10
man/tailFactor.Rd | 5
man/triResi,AnnualAggLossDevModelOutput-method.Rd | 4
man/triResi.Rd | 5
src/Makevars.win | 98
src/distributions/DSpline.cpp | 684
src/distributions/DSpline.h | 446
src/samplers/ExpandableArray.cpp | 142
src/samplers/ExpandableArray.h | 94
src/samplers/Knots.cpp | 1280
src/samplers/Knots.h | 266
src/samplers/RJumpSpline.cpp | 1548
src/samplers/RJumpSpline.h | 378
src/samplers/RJumpSplineFactory.cpp | 272
src/samplers/RJumpSplineFactory.h | 130
src/samplers/lapack.h | 180
187 files changed, 589478 insertions(+), 589541 deletions(-)
Path: /cran/updated | permanent link
Title: Functional Data Analysis
Diff between fda versions 2.2.2 dated 2010-06-22 and 2.2.3 dated 2010-08-31
More information about fda at CRAN
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer. They were
ported from earlier versions in Matlab and S-PLUS. An
introduction appears in Ramsay, J. O., Hooker, Giles, and
Graves, Spencer (2009) Functional Data Analysis with R and
Matlab (Springer). The package includes data sets and script
files working many examples including all but one of the 76
figures in this latter book.
Author: J. O. Ramsay
Maintainer: J. O. Ramsay
DESCRIPTION | 8 +++++---
R/basisfd.R | 14 ++++++++------
R/fRegress.CV.R | 4 ++--
R/fRegress.numeric.R | 2 +-
R/fd.R | 14 ++++++++------
man/Fperm.fd.Rd | 4 ++--
6 files changed, 26 insertions(+), 20 deletions(-)
Path: /cran/updated | permanent link
Title: Parsing and evaluation tools that provide more details than the
default.
Diff between evaluate versions 0.1 dated 2010-07-24 and 0.3 dated 2010-08-31
More information about evaluate at CRAN
Description: Parsing and evaluation tools that make it easy to recreate
the command line behaviour of R.
Author: Hadley Wickham
Maintainer: Hadley Wickham
DESCRIPTION | 10 +++++----
NAMESPACE | 4 +++
NEWS |only
R/eval.r | 19 +++++++++++-------
R/graphics.r | 17 +++++-----------
R/output.r | 15 +++++++++++++-
R/parse.r | 10 ++++-----
R/replay.r | 10 ++++-----
R/src-region.r | 8 +++----
R/traceback.r |only
R/watcher.r | 12 ++++++-----
inst/doc |only
inst/tests/ggplot.r |only
inst/tests/test-evaluate.r | 47 +++++++++++----------------------------------
inst/tests/test-graphics.r |only
man/create_traceback.Rd |only
man/is.message.Rd |only
man/line_prompt.Rd | 3 +-
man/try_capture_stack.Rd |only
19 files changed, 77 insertions(+), 78 deletions(-)
Path: /cran/updated | permanent link
Title: Sequential Parameter Optimization
Diff between SPOT versions 0.1.888 dated 2010-06-22 and 0.1.1016 dated 2010-08-31
More information about SPOT at CRAN
Description: R-Package for Sequential Parameter Optimization Toolbox
Author: T. Bartz-Beielstein with contributions from: J. Ziegenhirt, W.
Konen, O. Flasch, P. Koch, M. Zaefferer
Maintainer: O. Flasch
SPOT-0.1.1016/SPOT/DESCRIPTION | 28 +-
SPOT-0.1.1016/SPOT/R/spot.R | 177 +++++++++--------
SPOT-0.1.1016/SPOT/R/spotAlgStartEs.R | 150 +++++++-------
SPOT-0.1.1016/SPOT/R/spotAlgStartSann.R | 25 --
SPOT-0.1.1016/SPOT/R/spotCreateDesignBasicDoe.R | 4
SPOT-0.1.1016/SPOT/R/spotCreateDesignDoeR3.R | 4
SPOT-0.1.1016/SPOT/R/spotCreateDesignFrF2.R | 4
SPOT-0.1.1016/SPOT/R/spotCreateDesignLhd.R | 4
SPOT-0.1.1016/SPOT/R/spotCreateDesignLhs.R | 4
SPOT-0.1.1016/SPOT/R/spotFuncStartBranin.R | 8
SPOT-0.1.1016/SPOT/R/spotGenerateSequentialDesign.R | 20 -
SPOT-0.1.1016/SPOT/R/spotGetOptions.R | 9
SPOT-0.1.1016/SPOT/R/spotGui.R |only
SPOT-0.1.1016/SPOT/R/spotHelpFunctions.R | 33 +--
SPOT-0.1.1016/SPOT/R/spotMeta.R | 65 +++++-
SPOT-0.1.1016/SPOT/R/spotPredictLm.R | 8
SPOT-0.1.1016/SPOT/R/spotPredictLmOptim.R | 16 -
SPOT-0.1.1016/SPOT/R/spotPredictMlegp.R | 4
SPOT-0.1.1016/SPOT/R/spotPrepareData.R | 12 -
SPOT-0.1.1016/SPOT/R/spotReportDefault.R | 2
SPOT-0.1.1016/SPOT/R/spotReportMetaDefault.R |only
SPOT-0.1.1016/SPOT/R/spotReportSens.R | 10
SPOT-0.1.1016/SPOT/R/spotSeqDesignIncreaseMultTwo.R | 3
SPOT-0.1.1016/SPOT/R/spotSeqDesignIncreasePlusOne.R | 3
SPOT-0.1.1016/SPOT/R/spotStatistics.R | 5
SPOT-0.1.1016/SPOT/Rplots.pdf | 4
SPOT-0.1.1016/SPOT/inst/GUI |only
SPOT-0.1.1016/SPOT/inst/doc/SPOT.pdf |binary
SPOT-0.1.1016/SPOT/inst/doc/SPOTmanual.pdf |binary
SPOT-0.1.1016/SPOT/man/SPOT-package.Rd | 4
SPOT-0.1.1016/SPOT/man/spot.Rd | 11 -
SPOT-0.1.1016/SPOT/man/spotAlgEs.Rd | 6
SPOT-0.1.1016/SPOT/man/spotAlgEsBanana.Rd | 5
SPOT-0.1.1016/SPOT/man/spotAlgEsBananaGradient.Rd | 6
SPOT-0.1.1016/SPOT/man/spotAlgEsDominantReco.Rd | 4
SPOT-0.1.1016/SPOT/man/spotAlgEsF.Rd | 7
SPOT-0.1.1016/SPOT/man/spotAlgEsGetSuccessRate.Rd | 7
SPOT-0.1.1016/SPOT/man/spotAlgEsHps.Rd | 6
SPOT-0.1.1016/SPOT/man/spotAlgEsIndividualInitial.Rd | 10
SPOT-0.1.1016/SPOT/man/spotAlgEsInitParentPop.Rd | 5
SPOT-0.1.1016/SPOT/man/spotAlgEsInterReco.Rd | 4
SPOT-0.1.1016/SPOT/man/spotAlgEsInterRecoBeSw02.Rd | 4
SPOT-0.1.1016/SPOT/man/spotAlgEsMarriage.Rd | 3
SPOT-0.1.1016/SPOT/man/spotAlgEsMarriageWithReplace.Rd | 3
SPOT-0.1.1016/SPOT/man/spotAlgEsObjMutation.Rd | 1
SPOT-0.1.1016/SPOT/man/spotAlgEsRastrigin.Rd | 5
SPOT-0.1.1016/SPOT/man/spotAlgEsSelection.Rd | 1
SPOT-0.1.1016/SPOT/man/spotAlgEsSphere.Rd | 6
SPOT-0.1.1016/SPOT/man/spotAlgEsSphere1.Rd | 6
SPOT-0.1.1016/SPOT/man/spotAlgEsStratMutation.Rd | 5
SPOT-0.1.1016/SPOT/man/spotAlgEsTermination.Rd | 9
SPOT-0.1.1016/SPOT/man/spotAlgEsWild.Rd | 5
SPOT-0.1.1016/SPOT/man/spotAlgStartEs.Rd | 6
SPOT-0.1.1016/SPOT/man/spotAlgStartSann.Rd | 4
SPOT-0.1.1016/SPOT/man/spotGenerateSequentialDesign.Rd | 10
SPOT-0.1.1016/SPOT/man/spotGetOptions.Rd | 4
SPOT-0.1.1016/SPOT/man/spotGetRepeats.Rd | 5
SPOT-0.1.1016/SPOT/man/spotGui.Rd |only
SPOT-0.1.1016/SPOT/man/spotInstAndLoadPackages.Rd | 9
SPOT-0.1.1016/SPOT/man/spotMetaFlattenFbsRow.Rd |only
SPOT-0.1.1016/SPOT/man/spotMetaGetAssignmentOp.Rd |only
SPOT-0.1.1016/SPOT/man/spotMetaGetMetaVarNames.Rd |only
SPOT-0.1.1016/SPOT/man/spotNoisyBraninFunction.Rd | 8
SPOT-0.1.1016/SPOT/man/spotReportMetaDefault.Rd |only
SPOT-0.1.1016/SPOT/man/spotReportSens.Rd | 4
SPOT-0.1.1016/SPOT/man/spotSafelyAddSource.Rd | 7
SPOT-0.1.1016/SPOT/man/spotSeqDesignIncreaseMultTwo.Rd | 3
SPOT-0.1.1016/SPOT/man/spotSeqDesignIncreasePlusOne.Rd | 3
SPOT-0.1.1016/SPOT/man/spotStepInitial.Rd | 3
SPOT-0.1.1016/SPOT/man/spotStepMetaOpt.Rd | 7
SPOT-0.1.1016/SPOT/man/spotStepRunAlg.Rd | 7
SPOT-0.1.1016/SPOT/man/spotWriteLines.Rd | 5
SPOT-0.1.888/SPOT/INDEX |only
SPOT-0.1.888/SPOT/MD5 |only
SPOT-0.1.888/SPOT/inst/demo16EsBranin/es1.aroi |only
SPOT-0.1.888/SPOT/inst/demo16EsBranin/es1.bst |only
SPOT-0.1.888/SPOT/inst/demo16EsBranin/es1.des |only
SPOT-0.1.888/SPOT/inst/demo16EsBranin/es1.res |only
SPOT-0.1.888/SPOT/inst/doc/SPOTmanual.tex |only
SPOT-0.1.888/SPOT/man/spotAlgEsNoisyBraninFunction.Rd |only
SPOT-0.1.888/SPOT/man/spotFuncStartBraninSann.Rd |only
SPOT-0.1.888/SPOT/man/spotMetaGetAssOp.Rd |only
82 files changed, 462 insertions(+), 348 deletions(-)
Path: /cran/updated | permanent link
Title: Visualizing Categorical Data
Diff between vcd versions 1.2-8 dated 2010-02-08 and 1.2-9 dated 2010-08-30
More information about vcd at CRAN
Description: Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was inspired by the book "Visualizing Categorical Data"
by Michael Friendly.
Author: David Meyer, Achim Zeileis, Kurt Hornik
Maintainer: David Meyer
DESCRIPTION | 8 ++++----
NEWS | 18 ++++++++++++++++++
R/Ord_plot.R | 4 ++--
R/agreementplot.R | 2 +-
R/structable.R | 2 +-
R/ternaryplot.R | 2 ++
inst/NEWS | 18 ++++++++++++++++++
inst/doc/residual-shadings.pdf |binary
inst/doc/strucplot.pdf |binary
man/goodfit.Rd | 4 +++-
man/mosaic.Rd | 8 +++++---
man/ternaryplot.Rd | 3 +++
12 files changed, 57 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Title: Sets, Generalized Sets, Customizable Sets and Intervals
Diff between sets versions 1.0-6 dated 2010-04-11 and 1.0-7 dated 2010-08-30
More information about sets at CRAN
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and fuzzy
multisets, customizable sets, and intervals.
Author: David Meyer and Kurt Hornik (with contributions by Christian
Buchta)
Maintainer: David Meyer
DESCRIPTION | 8 ++++----
NEWS | 6 +++++-
R/interval.R | 4 ++--
inst/NEWS | 6 +++++-
inst/doc/sets.pdf |binary
5 files changed, 16 insertions(+), 8 deletions(-)
Path: /cran/updated | permanent link
Title: Generate 3D visualizations for data exploration on the web
Diff between vrmlgen versions 1.4.4 dated 2010-06-15 and 1.4.6 dated 2010-08-30
More information about vrmlgen at CRAN
Description: vrmlgen creates 3D scatter and bar plots, visualizations
of 3D meshes, parametric functions and height maps in
web-formats like the Virtual Reality Markup Language (VRML,
filetype .wrl) and the LiveGraphics3D format.
Author: Enrico Glaab
Maintainer:
DESCRIPTION | 10
R/vrmlgen-internal.R | 2
inst/CITATION |only
inst/doc/jssbib.bib | 522 +++++++++++++++++++++++++++----------------------
inst/doc/vrmlgen.pdf |binary
man/axis3d.Rd | 23 +-
man/bar3d.Rd | 39 ++-
man/cloud3d.Rd | 28 +-
man/lg3d.close.Rd | 17 +
man/lg3d.open.Rd | 19 +
man/lines3d.Rd | 23 +-
man/mesh3d.Rd | 27 +-
man/points3d.Rd | 23 +-
man/text3d.Rd | 27 +-
man/theo_edges.Rd | 4
man/theo_vertices.Rd | 4
man/uk_topo.Rd | 2
man/vrml.close.Rd | 21 +
man/vrml.open.Rd | 21 +
man/vrmlgen-package.Rd | 20 +
20 files changed, 490 insertions(+), 342 deletions(-)
Path: /cran/updated | permanent link
Title: The skew-normal and skew-t distributions
Diff between sn versions 0.4-15 dated 2010-04-02 and 0.4-16 dated 2010-08-30
More information about sn at CRAN
Description: Functions for manipulating skew-normal and skew-t
probability distributions, and for fitting them to data, in the
scalar and in the multivariate case.
Author: Adelchi Azzalini
Maintainer: Adelchi Azzalini
DESCRIPTION | 8 ++++----
R/sn.R | 6 +++---
2 files changed, 7 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: Scalable Robust Estimators with High Breakdown Point
Diff between rrcov versions 1.0-01 dated 2010-06-21 and 1.1-00 dated 2010-08-30
More information about rrcov at CRAN
Description: Robust Location and Scatter Estimation and Robust
Multivariate Analysis with High Breakdown Point.
Author: Valentin Todorov
Maintainer: Valentin Todorov
ChangeLog | 9
DESCRIPTION | 8
NAMESPACE | 10
R/AllClasses.R | 47 +
R/AllGenerics.R | 3
R/Cov.R | 72 +
R/CovControl.R | 92 +-
R/CovMMest.R |only
R/CovRobust.R | 1
R/CovSde.R | 25
R/CovSest.R | 453 +++++++-----
R/Pca.R | 5
R/PcaClassic.R | 7
R/PcaCov.R | 29
R/PcaGrid.R | 6
R/PcaHubert.R | 63 +
R/PcaLocantore.R | 10
R/PcaProj.R | 4
R/rrcov.control.R | 2
man/Cov-class.Rd | 19
man/CovControlMMest-class.Rd |only
man/CovControlMMest.Rd |only
man/CovControlSde.Rd | 2
man/CovControlSest.Rd | 2
man/CovMMest-class.Rd |only
man/CovMMest.Rd |only
man/CovSest.Rd | 13
man/Pca-class.Rd | 1
man/PcaCov.Rd | 15
man/PcaHubert.Rd | 15
man/getCenter-methods.Rd | 14
man/rrcov.control.Rd | 2
src/ds11.f | 69 +
src/sest.c |only
tests/thubert.R | 76 +-
tests/thubert.Rout.save |only
tests/tlda.Rout.save | 4
tests/tmcd4.Rout.save | 4
tests/tmest.Rout.save | 4
tests/tmest4.Rout.save | 4
tests/tmve4.Rout.save | 4
tests/togk4.Rout.save | 4
tests/tqda.Rout.save | 4
tests/tsde.R | 37
tests/tsde.Rout.save | 125 ++-
tests/tsest.R | 50 -
tests/tsest.Rout.save | 1621 ++++++++++++++++++++++++++++++++++++++++++-
47 files changed, 2497 insertions(+), 438 deletions(-)
Path: /cran/updated | permanent link
Title: Biological Sequences Retrieval and Analysis
Diff between seqinr versions 2.0-9 dated 2010-03-20 and 3.0-0 dated 2010-08-30
More information about seqinr at CRAN
Description: Exploratory data analysis and data visualization for
biological sequence (DNA and protein) data. Include also
utilities for sequence data management under the ACNUC system.
Author: Delphine Charif and Jean R. Lobry and Anamaria Necsulea and
Leonor Palmeira and Simon Penel
Maintainer: Simon Penel
DESCRIPTION | 10 +++++-----
R/as.alignment.R |only
inst/doc/src/appendix/releasenotes.rnw | 11 +++++++++++
man/as.alignment.Rd |only
man/clustal.Rd |only
man/fasta.Rd |only
man/mase.Rd |only
man/msf.Rd |only
man/phylip.Rd |only
9 files changed, 16 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: Easy analysis and visualization of factorial experiments.
Diff between ez versions 1.6.1 dated 2010-03-21 and 2.0-0 dated 2010-08-30
More information about ez at CRAN
Description: This package facilitates easy analysis of factorial
experiments, including purely within-Ss designs (a.k.a.
"repeated measures"), purely between-Ss designs, and mixed
within-and-between-Ss designs. The functions in this package
aim to provide simple, intuitive and consistent specification
of data analysis and visualization. Visualization functions
also include design visualization for pre-analysis data
auditing, and correlation matrix visualization. Finally, this
package includes functions for non-parametric analysis,
including permutation tests and bootstrap resampling. The
bootstrap function obtains predictions either by cell means or
by more advanced/powerful mixed effects models, yielding
predictions and confidence intervals that may be easily
visualized at any level of the experiment's design.
Author: Michael A. Lawrence
Maintainer: Michael A. Lawrence
CHANGES | 19 +++
DESCRIPTION | 30 +++--
NAMESPACE | 2
R/ez-internal.R | 309 +++++++++++++++++++++++++++++++----------------------
R/ezANOVA.R | 87 +-------------
R/ezBoot.R |only
R/ezCor.R | 5
R/ezDesign.R |only
R/ezPerm.R | 26 ++--
R/ezPlot.R | 117 ++++++++++++++++----
R/ezPlotBoot.R |only
R/ezPrecis.R |only
R/ezStats.R | 76 ++++++++++++-
data/ANT.rda |binary
data/ANT2.rda |only
man/ANT.Rd | 15 +-
man/ANT2.Rd |only
man/ez-internal.Rd | 3
man/ez-package.Rd | 16 ++
man/ezANOVA.Rd | 87 ++++++--------
man/ezBoot.Rd |only
man/ezCor.Rd | 81 ++++++++-----
man/ezDesign.Rd |only
man/ezPerm.Rd | 72 +++++-------
man/ezPlot.Rd | 258 ++++++++++++++++++++++++++------------------
man/ezPlotBoot.Rd |only
man/ezPrecis.Rd |only
man/ezStats.Rd | 71 ++++--------
28 files changed, 747 insertions(+), 527 deletions(-)
Path: /cran/updated | permanent link
Title: Rcmdr plugin for quality control course
Diff between RcmdrPlugin.qual versions 0.5.0 dated 2010-04-27 and 1.0.0 dated 2010-08-30
More information about RcmdrPlugin.qual at CRAN
Description: This package provides an Rcmdr "plug-in" based on the
Quality control class Stat 4300
Author: Erin Hodgess
Maintainer: Erin Hodgess
DESCRIPTION | 8 ++++----
R/RcmdrPlugin.qual.R | 22 ++++++++++++++++++++++
inst/etc/menus.txt | 6 +++---
man/RcmdrPlugin.qual-internal.Rd | 1 +
4 files changed, 30 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: Interface between GRASS 6 geographical information system and R
Diff between spgrass6 versions 0.6-19 dated 2010-07-24 and 0.6-20 dated 2010-08-30
More information about spgrass6 at CRAN
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 6 +++++-
DESCRIPTION | 8 ++++----
R/initGRASS.R | 10 +++++-----
inst/ChangeLog | 6 +++++-
4 files changed, 19 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
Title: Spatially explicit capture-recapture
Diff between secr versions 1.4.0 dated 2010-05-07 and 1.4.1 dated 2010-08-30
More information about secr at CRAN
Description: Estimate animal population density with capture--recapture
data from an array of passive detectors (traps). Models
incorporating distance-dependent detection are fitted by
maximizing the likelihood. Tools are included for data
manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford
secr-1.4.0/secr/man/print.mask.Rd |only
secr-1.4.1/secr/DESCRIPTION | 8
secr-1.4.1/secr/NAMESPACE | 5
secr-1.4.1/secr/NEWS | 124
secr-1.4.1/secr/R/D.designdata.R | 16
secr-1.4.1/secr/R/DENSITY.R | 4
secr-1.4.1/secr/R/autoini.R | 119
secr-1.4.1/secr/R/dbar.R | 26
secr-1.4.1/secr/R/empirical.R |only
secr-1.4.1/secr/R/functions.R | 8
secr-1.4.1/secr/R/ip.secr.R | 85
secr-1.4.1/secr/R/make.capthist.R | 6
secr-1.4.1/secr/R/make.tri.R |only
secr-1.4.1/secr/R/methods.R | 489
secr-1.4.1/secr/R/onAttach.R |only
secr-1.4.1/secr/R/pdot.R | 15
secr-1.4.1/secr/R/plot.secr.R | 122
secr-1.4.1/secr/R/secr.design.MS.R | 105
secr-1.4.1/secr/R/secr.make.newdata.R | 39
secr-1.4.1/secr/R/sim.capthist.R | 709
secr-1.4.1/secr/R/sim.popn.R |only
secr-1.4.1/secr/R/sim.secr.R | 152
secr-1.4.1/secr/R/write.captures.R | 10
secr-1.4.1/secr/data/housemouse.RData |binary
secr-1.4.1/secr/data/ovenbird.RData |binary
secr-1.4.1/secr/inst/doc/secr-manual.pdf |21510 ++++++++++++++--------------
secr-1.4.1/secr/man/FAQ.Rd | 34
secr-1.4.1/secr/man/autoini.Rd | 22
secr-1.4.1/secr/man/coulombe.Rd | 49
secr-1.4.1/secr/man/deermouse.Rd | 28
secr-1.4.1/secr/man/derivedMS.Rd | 39
secr-1.4.1/secr/man/detectfn.Rd | 13
secr-1.4.1/secr/man/empirical.Rd |only
secr-1.4.1/secr/man/homerange.Rd | 5
secr-1.4.1/secr/man/ip.secr.Rd | 22
secr-1.4.1/secr/man/make.traps.Rd | 7
secr-1.4.1/secr/man/make.tri.Rd |only
secr-1.4.1/secr/man/ovenbird.Rd | 49
secr-1.4.1/secr/man/ovensong.Rd | 17
secr-1.4.1/secr/man/plot.secr.Rd | 3
secr-1.4.1/secr/man/possum.Rd | 13
secr-1.4.1/secr/man/rbind.capthist.Rd | 18
secr-1.4.1/secr/man/rbind.traps.Rd | 11
secr-1.4.1/secr/man/secr-package.Rd | 16
secr-1.4.1/secr/man/secr.fit.Rd | 69
secr-1.4.1/secr/man/secr.model.density.Rd | 7
secr-1.4.1/secr/man/secr.model.detection.Rd | 28
secr-1.4.1/secr/man/secrdemo.Rd | 15
secr-1.4.1/secr/man/sim.capthist.Rd | 48
secr-1.4.1/secr/man/sim.popn.Rd | 15
secr-1.4.1/secr/man/sim.secr.Rd | 4
secr-1.4.1/secr/man/skink.Rd | 13
secr-1.4.1/secr/man/stoatDNA.Rd | 17
secr-1.4.1/secr/src/secr.c | 1186 -
secr-1.4.1/secr/src/secr.h | 7
55 files changed, 13337 insertions(+), 11970 deletions(-)
Path: /cran/updated | permanent link
Title: Nearest Neighbor Autocovariates
Diff between nnc versions 1.12 dated 2010-08-23 and 1.13 dated 2010-08-30
More information about nnc at CRAN
Description: Computes nearest neighbor autocovariates
Author: A. I. McLeod and M. S. Islam
Maintainer:
DESCRIPTION | 14 +++----
NAMESPACE | 8 ++--
NEWS | 4 ++
inst/Mathematica |only
inst/doc/Rplots.pdf | 89 ++++++++++++++++++++++++-----------------------
inst/doc/nncVignette.Rnw | 16 ++++----
inst/doc/nncVignette.pdf |binary
man/khat.Rd | 10 ++---
man/nnc-package.Rd | 10 ++---
man/nnc.Rd | 20 +++++-----
man/nncTest.Rd | 8 ++--
11 files changed, 94 insertions(+), 85 deletions(-)
Path: /cran/updated | permanent link
Title: Smoothed minimax concave penalization (SMCP) method for
genome-wide association studies.
Diff between SMCP versions 1.1.1 dated 2010-08-26 and 1.1.2 dated 2010-08-30
More information about SMCP at CRAN
Description: A package containing functions that fit the marginalized
linear model with SMCP.
Author: Jin (Gordon) Liu
Maintainer: Jin (Gordon) Liu
DESCRIPTION | 17 ++++++++---------
1 file changed, 8 insertions(+), 9 deletions(-)
Path: /cran/updated | permanent link
Title: Read and write of MAT files together with R-to-Matlab
connectivity
Diff between R.matlab versions 1.3.1 dated 2010-05-22 and 1.3.2 dated 2010-08-30
More information about R.matlab at CRAN
Description: This package provides methods to read and write MAT files.
It also makes it possible to communicate (evaluate code, send
and retrieve objects etc.) with Matlab v6 or higher running
locally or on a remote host.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 10 ++++---
R/Matlab.R | 28 ++++++++++++++-------
incl/Matlab.Rex | 28 +++++++++++++++------
inst/NEWS | 14 ++++++++++
inst/externals/MatlabServer.m | 20 +++++++++++----
man/Matlab.Rd | 55 ++++++++++++++++++++++++++++--------------
6 files changed, 111 insertions(+), 44 deletions(-)
Path: /cran/updated | permanent link
Title: Mode Estimation
Diff between modeest versions 1.09 dated 2009-05-24 and 1.14 dated 2010-08-29
More information about modeest at CRAN
Description: This package provides estimators of the mode of univariate
unimodal data or univariate unimodal distributions
Author: P. PONCET
Maintainer: P. PONCET
DESCRIPTION | 15 ++---
R/asselin.R | 2
R/mlv.R | 7 ++
R/parzen.R | 10 +++
R/vieu.R |only
man/Lientz.Rd | 2
man/asselin.Rd | 8 --
man/discrete.Rd | 2
man/distribMode.Rd | 146 +++++++++++++++++++++++++++++++++++++------------
man/grenander.Rd | 2
man/hsm.Rd | 2
man/mlv.Rd | 6 +-
man/modeest-package.Rd | 14 ++--
man/naive.Rd | 2
man/parzen.Rd | 2
man/skewness.Rd | 6 +-
man/tsybakov.Rd | 2
man/venter.Rd | 2
man/vieu.Rd |only
19 files changed, 162 insertions(+), 68 deletions(-)
Path: /cran/updated | permanent link
Title: RIS package for bibliographic analysis
Diff between ris versions 1.0 dated 2010-02-21 and 1.1 dated 2010-08-29
More information about ris at CRAN
Description: Importing RIS-formatted file into a list of Bibtex-like
references; checking for duplications; converting references to
citEntry objects
Author: Stephanie Kovalchik
Maintainer: Stephanie Kovalchik
DESCRIPTION | 8 ++++----
R/read.ris.R | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: Geographic analysis and modeling with raster data
Diff between raster versions 1.3-11 dated 2010-08-12 and 1.4-10 dated 2010-08-29
More information about raster at CRAN
Description: Reading, writing, manipulating, analyzing and modeling of
gridded spatial data. The package implements basic and
high-level functons, as well as map algebra. Processing of very
large files is supported.
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans
raster-1.3-11/raster/R/calcStackMultFunctions.R |only
raster-1.3-11/raster/R/clump2.R |only
raster-1.3-11/raster/man/RasterLayer-class.Rd |only
raster-1.3-11/raster/man/dataContent.Rd |only
raster-1.4-10/raster/ChangeLog | 53 ++++
raster-1.4-10/raster/DESCRIPTION | 18 -
raster-1.4-10/raster/NAMESPACE | 4
raster-1.4-10/raster/R/AAAClasses.R | 26 +-
raster-1.4-10/raster/R/area.R | 145 ++++++++++-
raster-1.4-10/raster/R/artith.R | 87 +++++-
raster-1.4-10/raster/R/as.logical.R | 21 +
raster-1.4-10/raster/R/calcLayers.R |only
raster-1.4-10/raster/R/calcStack.R | 13 -
raster-1.4-10/raster/R/cellStats.R | 89 ++++--
raster-1.4-10/raster/R/cellValues.R | 27 --
raster-1.4-10/raster/R/clump.R | 308 +++++++-----------------
raster-1.4-10/raster/R/coercion.R | 9
raster-1.4-10/raster/R/compare_Logical.R | 89 +++++-
raster-1.4-10/raster/R/crop.R | 2
raster-1.4-10/raster/R/dataProperties.R | 28 +-
raster-1.4-10/raster/R/dropLayer.R | 53 +++-
raster-1.4-10/raster/R/ext.R | 10
raster-1.4-10/raster/R/extension.R | 8
raster-1.4-10/raster/R/focalNA.R | 12
raster-1.4-10/raster/R/getData.R | 7
raster-1.4-10/raster/R/getOptions.R | 12
raster-1.4-10/raster/R/getValuesBlock.R | 20 -
raster-1.4-10/raster/R/gridDistance.R | 138 +++++-----
raster-1.4-10/raster/R/interpolate.R | 6
raster-1.4-10/raster/R/is.na.R | 37 ++
raster-1.4-10/raster/R/mask.R | 110 ++++++++
raster-1.4-10/raster/R/math.R | 30 +-
raster-1.4-10/raster/R/naValue.R | 19 +
raster-1.4-10/raster/R/netCDFread.R | 60 +++-
raster-1.4-10/raster/R/netCDFreadCells.R | 2
raster-1.4-10/raster/R/netCDFtoRasterCD.R | 20 -
raster-1.4-10/raster/R/netCDFwriteCD.R | 1
raster-1.4-10/raster/R/netCDFwriteRST.R | 1
raster-1.4-10/raster/R/plot.R | 19 -
raster-1.4-10/raster/R/plotCT.R | 8
raster-1.4-10/raster/R/plotRGB.R | 58 ++++
raster-1.4-10/raster/R/polygonToRaster.R | 12
raster-1.4-10/raster/R/raster.R | 4
raster-1.4-10/raster/R/rasterFromRasterFile.R | 2
raster-1.4-10/raster/R/rasterTmpFile.R | 8
raster-1.4-10/raster/R/rasterToPoints.R | 6
raster-1.4-10/raster/R/readCells.R | 107 ++++----
raster-1.4-10/raster/R/readRasterBrick.R | 24 -
raster-1.4-10/raster/R/readRasterLayer.R | 23 -
raster-1.4-10/raster/R/saveOptions.R | 21 -
raster-1.4-10/raster/R/setOptions.R | 7
raster-1.4-10/raster/R/setValues.R | 42 ---
raster-1.4-10/raster/R/stackApply.R |only
raster-1.4-10/raster/R/subset.R |only
raster-1.4-10/raster/R/text.R |only
raster-1.4-10/raster/R/writeGDAL.R | 18 +
raster-1.4-10/raster/R/writeGDALrow.R | 11
raster-1.4-10/raster/R/writeHdrRaster.R | 5
raster-1.4-10/raster/R/xyValues.R | 14 -
raster-1.4-10/raster/inst/doc/Raster.pdf |binary
raster-1.4-10/raster/inst/doc/functions.pdf |binary
raster-1.4-10/raster/inst/doc/rasterfile.pdf |binary
raster-1.4-10/raster/man/Arith-methods.Rd | 34 ++
raster-1.4-10/raster/man/Logic-methods.Rd | 19 -
raster-1.4-10/raster/man/Math-methods.Rd | 14 -
raster-1.4-10/raster/man/Raster-classes.Rd |only
raster-1.4-10/raster/man/area.Rd | 15 -
raster-1.4-10/raster/man/as.logical-methods.Rd | 5
raster-1.4-10/raster/man/calc.Rd | 73 +----
raster-1.4-10/raster/man/cellStats.Rd | 10
raster-1.4-10/raster/man/changeStack.Rd | 8
raster-1.4-10/raster/man/click.Rd | 6
raster-1.4-10/raster/man/datasource.Rd |only
raster-1.4-10/raster/man/extension.Rd | 9
raster-1.4-10/raster/man/gridDistance.Rd | 17 -
raster-1.4-10/raster/man/interpolate.Rd | 2
raster-1.4-10/raster/man/mask.Rd | 8
raster-1.4-10/raster/man/plot.Rd | 24 +
raster-1.4-10/raster/man/plot3d.Rd | 13 -
raster-1.4-10/raster/man/pointsToRaster.Rd | 10
raster-1.4-10/raster/man/projectRaster.Rd | 25 +
raster-1.4-10/raster/man/raster-package.Rd | 67 ++---
raster-1.4-10/raster/man/raster.Rd | 4
raster-1.4-10/raster/man/rasterOptions.Rd | 3
raster-1.4-10/raster/man/rasterToPoints.Rd | 4
raster-1.4-10/raster/man/stackApply.Rd |only
raster-1.4-10/raster/man/subset.Rd |only
raster-1.4-10/raster/man/writeRaster.Rd | 4
88 files changed, 1353 insertions(+), 875 deletions(-)
Path: /cran/updated | permanent link
Title: Data analysis in ecology
Diff between pgirmess versions 1.4.7 dated 2010-07-24 and 1.4.8 dated 2010-08-29
More information about pgirmess at CRAN
Description: Miscellaneous functions for analysis and display of
ecological and spatial data
Author: Patrick Giraudoux
Maintainer: Patrick Giraudoux
DESCRIPTION | 8 ++++----
R/rwhatbufCat.r | 2 +-
R/rwhatbufCat2.r |only
R/rwhatbufNum.r | 2 +-
man/kruskalmc.rd | 4 ++--
man/rwhatbufCat.rd | 6 +++---
man/rwhatbufCat2.rd |only
man/selMod.Rd | 4 +++-
8 files changed, 14 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Title: Multivariate Adaptive Regression Spline Models
Diff between earth versions 2.4-1 dated 2010-08-28 and 2.4-2 dated 2010-08-29
More information about earth at CRAN
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression
Splines". (The term "MARS" is copyrighted and thus not used in
the name of the package.)
Author: Stephen Milborrow derived from mda:mars by Trevor Hastie and
Rob Tibshirani.
Maintainer: Stephen Milborrow
DESCRIPTION | 6 +++---
NEWS | 2 +-
man/earth.Rd | 2 +-
3 files changed, 5 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: Classification and Regression Training
Diff between caret versions 4.57 dated 2010-08-26 and 4.58 dated 2010-08-29
More information about caret at CRAN
Description: Misc functions for training and plotting classification
and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn
DESCRIPTION | 8
NAMESPACE | 3
R/misc.R | 53 +-
R/modelLookup.R | 4
R/predictionFunction.R | 28 -
R/probFunction.R | 160 +++++-
R/resamples.R | 66 +-
R/train.default.R | 16
R/trainControl.R | 2
inst/NEWS | 10
inst/doc/caretMisc.pdf |binary
inst/doc/caretSelection.Rnw | 2
inst/doc/caretSelection.pdf |binary
inst/doc/caretTrain.R | 170 ++++--
inst/doc/caretTrain.Rnw | 1102 ++++++++++++++++++++++++++++++++++++--------
inst/doc/caretTrain.pdf |binary
inst/doc/caretVarImp.pdf |binary
inst/doc/speedup.pdf |only
man/postResample.Rd | 8
man/trainControl.Rd | 2
20 files changed, 1323 insertions(+), 311 deletions(-)
Path: /cran/updated | permanent link
Title: Best Subset GLM
Diff between bestglm versions 0.20 dated 2009-11-01 and 0.30 dated 2010-08-29
More information about bestglm at CRAN
Description: Best subset glm using AIC, BIC, EBIC, BICq or
Cross-Validation. For the normal case, the 'leaps' is used.
Otherwise, a slower exhaustive search. The 'xtable' package is
needed for vignette 'SimExperimentBICq.Rnw' accompanying this
package.
Author: A.I. McLeod and Changjiang Xu
Maintainer: A.I. McLeod
bestglm-0.20/bestglm/R/oneSd.R |only
bestglm-0.30/bestglm/DESCRIPTION | 12
bestglm-0.30/bestglm/NAMESPACE |only
bestglm-0.30/bestglm/NEWS |only
bestglm-0.30/bestglm/R/bestglm-internal.R | 2
bestglm-0.30/bestglm/R/oneSdRule.R |only
bestglm-0.30/bestglm/Rplots.pdf |only
bestglm-0.30/bestglm/inst/doc/LASSOProstate.R |only
bestglm-0.30/bestglm/inst/doc/Rplots.pdf | 24
bestglm-0.30/bestglm/inst/doc/SimExperimentBICq.pdf |binary
bestglm-0.30/bestglm/inst/doc/bestglm.bib | 6
bestglm-0.30/bestglm/inst/doc/bestglm.pdf | 983 ++++++++++----------
bestglm-0.30/bestglm/man/bestglm-package.Rd | 7
bestglm-0.30/bestglm/man/bestglm.Rd | 4
14 files changed, 524 insertions(+), 514 deletions(-)
Path: /cran/updated | permanent link
Title: Phylogenetic analysis in R
Diff between phangorn versions 1.0-2 dated 2010-05-16 and 1.1-0 dated 2010-08-28
More information about phangorn at CRAN
Description: Phylogenetic analysis in R (Estimation of phylogenetic
trees and networks using Maximum Likelihood, Maximum Parsimony,
Distance methods & Hadamard conjugation)
Author: Klaus Schliep
Maintainer: Klaus Schliep
phangorn-1.0-2/phangorn/inst/doc/Trees.R |only
phangorn-1.1-0/phangorn/ChangeLog | 35
phangorn-1.1-0/phangorn/DESCRIPTION | 10
phangorn-1.1-0/phangorn/NAMESPACE | 4
phangorn-1.1-0/phangorn/R/phylo.R | 1668 +++++++++++------
phangorn-1.1-0/phangorn/Thanks | 6
phangorn-1.1-0/phangorn/inst/doc/Rplots.pdf |only
phangorn-1.1-0/phangorn/inst/doc/Trees.Rnw | 14
phangorn-1.1-0/phangorn/inst/doc/Trees.pdf |binary
phangorn-1.1-0/phangorn/inst/doc/exdna.txt |only
phangorn-1.1-0/phangorn/inst/doc/phangorn-specials.Rnw |only
phangorn-1.1-0/phangorn/inst/doc/phangorn-specials.pdf |only
phangorn-1.1-0/phangorn/inst/doc/phangorn.bib | 407 ++--
phangorn-1.1-0/phangorn/man/dist.hamming.Rd | 2
phangorn-1.1-0/phangorn/man/getClans.Rd |only
phangorn-1.1-0/phangorn/man/modelTest.Rd | 3
phangorn-1.1-0/phangorn/man/parsimony.Rd | 13
phangorn-1.1-0/phangorn/man/phyDat.Rd | 13
phangorn-1.1-0/phangorn/man/pml.Rd | 15
phangorn-1.1-0/phangorn/man/pmlCluster.Rd | 2
phangorn-1.1-0/phangorn/man/pmlMix.Rd | 2
phangorn-1.1-0/phangorn/man/pmlPart.Rd | 4
phangorn-1.1-0/phangorn/src/init.c | 10
phangorn-1.1-0/phangorn/src/phangorn.c | 300 ---
phangorn-1.1-0/phangorn/src/phangorn.h | 11
25 files changed, 1461 insertions(+), 1058 deletions(-)
Path: /cran/updated | permanent link
Title: Interface between GMT Map-Making Software and R
Diff between gmt versions 1.1-6 dated 2010-08-27 and 1.1-7 dated 2010-08-28
More information about gmt at CRAN
Description: Interface between the GMT map-making software and R,
enabling the user to manipulate geographic data within R and
call GMT commands to draw and annotate maps in postscript
format. The 'gmt' package is about interactive data analysis,
rapidly visualizing subsets and summaries of geographic data,
while performing statistical analysis in the R console.
Author: Arni Magnusson
Maintainer: Arni Magnusson
DESCRIPTION | 6 +++---
NEWS | 2 +-
R/psbar.R | 2 +-
R/psclose.R | 2 +-
R/r2gmt.R | 4 ++--
5 files changed, 8 insertions(+), 8 deletions(-)
Path: /cran/updated | permanent link
Title: Spherical Trigonometry
Diff between geosphere versions 1.2-7 dated 2010-07-26 and 1.2-10 dated 2010-08-28
More information about geosphere at CRAN
Description: Spherical trigonometry for geographic applications
Author: Robert J. Hijmans, Ed Williams, Chris Vennes
Maintainer: Robert J. Hijmans
ChangeLog |only
DESCRIPTION | 10 ++---
R/areaPolygon.R | 12 ++++++
R/distPoint2Line.R |only
R/distVincentyEllipsoid.R | 2 +
R/makePoly.R | 91 +++++++++++++++++++++++++++++++++++++++++-----
R/midPoint.R | 27 ++++++-------
R/onGreatCircle.R |only
R/pointsToMatrix.R | 25 +++++++++---
inst/doc/geosphere.Rnw | 27 +++++++++++--
inst/doc/geosphere.pdf |binary
man/daylength.Rd | 13 ++++--
man/distHaversine.Rd | 2 -
man/distPoint2line.Rd |only
man/geosphere-package.Rd | 6 +--
man/makepoly.Rd | 9 +++-
man/midPoint.Rd | 4 +-
man/onGreatCircle.Rd |only
18 files changed, 175 insertions(+), 53 deletions(-)
Path: /cran/updated | permanent link
Title: Multivariate Adaptive Regression Spline Models
Diff between earth versions 2.4-0 dated 2009-11-09 and 2.4-1 dated 2010-08-28
More information about earth at CRAN
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression
Splines". (The term "MARS" is copyrighted and thus not used in
the name of the package.)
Author: Stephen Milborrow derived from mda:mars by Trevor Hastie and
Rob Tibshirani.
Maintainer: Stephen Milborrow
DESCRIPTION | 8
NEWS | 14 -
R/earth.R | 9
R/earth.cv.R | 20 -
R/earth.glm.R | 16 -
R/earthlib.R | 35 +-
R/evimp.R | 4
R/expand.arg.R | 4
R/format.earth.R | 2
R/model.matrix.earth.R | 15 -
R/plot.earth.R | 24 +
R/plotd.R | 83 +++---
R/plotmo.R | 8
R/predict.earth.R | 2
R/print.earth.R | 6
man/earth.Rd | 494 +++++++++++++++++++-----------------
man/evimp.Rd | 37 +-
man/format.earth.Rd | 8
man/mars.to.earth.Rd | 2
man/plot.earth.Rd | 29 +-
man/plotd.Rd | 26 +
man/plotmo.Rd | 13
man/predict.earth.Rd | 16 -
man/summary.earth.Rd | 14 -
man/update.earth.Rd | 10
src/tests/earth.times.bat | 2
src/tests/test.earth.big.Rout.save | 1
src/tests/test.earth.big.bat | 9
src/tests/test.earth.cv.R | 5
src/tests/test.earth.cv.Rout.save | 7
src/tests/test.earth.cv.bat | 9
src/tests/test.earth.full.Rout.save | 9
src/tests/test.earth.full.bat | 9
src/tests/test.earth.glm.Rout.save | 118 +++-----
src/tests/test.earth.glm.bat | 9
src/tests/test.earthc.mak | 2
src/tests/test.plotd.R | 5
src/tests/test.plotd.Rout.save | 10
src/tests/test.plotd.bat | 9
src/tests/test.plotmo.Rout.save | 9
src/tests/test.plotmo.bat | 9
41 files changed, 605 insertions(+), 516 deletions(-)
Path: /cran/updated | permanent link
Title: Data Cloning and MCMC Tools for Maximum Likelihood Methods
Diff between dclone versions 1.1-0 dated 2010-05-04 and 1.2-0 dated 2010-08-28
More information about dclone at CRAN
Description: Low level functions for implementing maximum likelihood
estimating procedures for complex models using data cloning and
Bayesian Markov chain Monte Carlo methods with support for
JAGS, WinBUGS and OpenBUGS, with support for parallel
computing.
Author: Peter Solymos
Maintainer: Peter Solymos
DESCRIPTION | 12 ++++++------
R/dc.parfit.R | 2 +-
R/dcdiag.default.R | 3 +++
R/extractdcdiag.default.R | 4 +++-
R/extractdctable.default.R | 5 ++++-
R/jags.parfit.R | 35 +++++------------------------------
R/plot.dctable.R | 4 ++--
R/print.custommodel.R | 5 +++--
R/snowWrapper.R | 4 +---
R/summary.mcmc.list.dc.R | 13 ++++++++-----
R/zzz.R | 3 +++
inst/CITATION |only
inst/ChangeLog | 11 +++++++++++
man/dctable.Rd | 2 +-
man/jags.parfit.Rd | 2 +-
man/snowWrapper.Rd | 12 +-----------
16 files changed, 53 insertions(+), 64 deletions(-)
Path: /cran/updated | permanent link
Title: Solver for Delay Differential Equations
Diff between PBSddesolve versions 1.08.9 dated 2010-04-29 and 1.08.11 dated 2010-08-28
More information about PBSddesolve at CRAN
Description: This package solves systems of delay differential
equations. by interfacing numerical routines written by Simon
N. Wood
Author: Alex Couture-Beil
Maintainer: Jon Schnute
DESCRIPTION | 8 ++++----
inst/doc/PBSddesolveIntro.pdf |binary
src/PBSddesolve.c | 1 +
3 files changed, 5 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Title: Pharmacometric tools for data preparation, modeling, simulation,
and reporting
Diff between MIfuns versions 3.2.9 dated 2008-11-04 and 4.0.16 dated 2010-08-28
More information about MIfuns at CRAN
Description: Pharmacometric tools for common data preparation tasks,
stratified bootstrap resampling of data sets, NONMEM control
stream creation/editing, NONMEM model execution, creation of
standard and user-defined diagnostic plots, execution and
summary of bootstrap and predictive check results,
implementation of simulations from posterior parameter
distributions, reporting of output tables and creation of a
detailed analysis log.
Author: Metrum Institute (http://metruminstitute.org): Bill Knebel,
Leonid Gibianski, Tim Bergsma
Maintainer: Tim Bergsma
MIfuns-3.2.9/MIfuns/R/AUC.R |only
MIfuns-3.2.9/MIfuns/R/CWRES.R |only
MIfuns-3.2.9/MIfuns/R/CheckPositiveMatrix.R |only
MIfuns-3.2.9/MIfuns/R/CheckPositiveVector.R |only
MIfuns-3.2.9/MIfuns/R/CheckWS.R |only
MIfuns-3.2.9/MIfuns/R/ComputePredictiveCheck.R |only
MIfuns-3.2.9/MIfuns/R/CreateParametersForSimulation.R |only
MIfuns-3.2.9/MIfuns/R/Omega.MtoV.R |only
MIfuns-3.2.9/MIfuns/R/Omega.VtoM.R |only
MIfuns-3.2.9/MIfuns/R/PlotPredictiveCheck.R |only
MIfuns-3.2.9/MIfuns/R/Q25.R |only
MIfuns-3.2.9/MIfuns/R/Q75.R |only
MIfuns-3.2.9/MIfuns/R/SimulateOmega.R |only
MIfuns-3.2.9/MIfuns/R/TABR.R |only
MIfuns-3.2.9/MIfuns/R/Tmin.R |only
MIfuns-3.2.9/MIfuns/R/TruncateParametersForSimulation.R |only
MIfuns-3.2.9/MIfuns/R/acceptance.R |only
MIfuns-3.2.9/MIfuns/R/ar.R |only
MIfuns-3.2.9/MIfuns/R/as.annotated.R |only
MIfuns-3.2.9/MIfuns/R/as.annotated.data.frame.R |only
MIfuns-3.2.9/MIfuns/R/as.csv.filename.R |only
MIfuns-3.2.9/MIfuns/R/as.csv.filename.character.R |only
MIfuns-3.2.9/MIfuns/R/as.distribution.R |only
MIfuns-3.2.9/MIfuns/R/as.distribution.data.frame.R |only
MIfuns-3.2.9/MIfuns/R/as.double.immutable.R |only
MIfuns-3.2.9/MIfuns/R/as.filename.character.R |only
MIfuns-3.2.9/MIfuns/R/auc-ss.R |only
MIfuns-3.2.9/MIfuns/R/bmi.R |only
MIfuns-3.2.9/MIfuns/R/boxplot.prestats.R |only
MIfuns-3.2.9/MIfuns/R/bsa.R |only
MIfuns-3.2.9/MIfuns/R/cavg.R |only
MIfuns-3.2.9/MIfuns/R/check.data.R |only
MIfuns-3.2.9/MIfuns/R/cmax.R |only
MIfuns-3.2.9/MIfuns/R/cmin.R |only
MIfuns-3.2.9/MIfuns/R/covplot.R |only
MIfuns-3.2.9/MIfuns/R/covplot.stats.R |only
MIfuns-3.2.9/MIfuns/R/crcl.R |only
MIfuns-3.2.9/MIfuns/R/cwres_1.R |only
MIfuns-3.2.9/MIfuns/R/diagnostics.R |only
MIfuns-3.2.9/MIfuns/R/doCov.R |only
MIfuns-3.2.9/MIfuns/R/forbak.R |only
MIfuns-3.2.9/MIfuns/R/ind.cwres.R |only
MIfuns-3.2.9/MIfuns/R/is.cwres.readable.file.R |only
MIfuns-3.2.9/MIfuns/R/ke.R |only
MIfuns-3.2.9/MIfuns/R/lbm.R |only
MIfuns-3.2.9/MIfuns/R/maxChar.R |only
MIfuns-3.2.9/MIfuns/R/mcmc.density.R |only
MIfuns-3.2.9/MIfuns/R/mcmc.history.R |only
MIfuns-3.2.9/MIfuns/R/metaSub.filename.R |only
MIfuns-3.2.9/MIfuns/R/myriwish.R |only
MIfuns-3.2.9/MIfuns/R/myshell.R |only
MIfuns-3.2.9/MIfuns/R/naInContext.R |only
MIfuns-3.2.9/MIfuns/R/nocb.R |only
MIfuns-3.2.9/MIfuns/R/packageCheck.R |only
MIfuns-3.2.9/MIfuns/R/panel.covplot.R |only
MIfuns-3.2.9/MIfuns/R/parameter.plot.table.R |only
MIfuns-3.2.9/MIfuns/R/prepanel.covplot.R |only
MIfuns-3.2.9/MIfuns/R/print.annotated.R |only
MIfuns-3.2.9/MIfuns/R/resample.R |only
MIfuns-3.2.9/MIfuns/R/resample.csv.filename.R |only
MIfuns-3.2.9/MIfuns/R/rinvchisq.R |only
MIfuns-3.2.9/MIfuns/R/rinvgamma.R |only
MIfuns-3.2.9/MIfuns/R/riwish.R |only
MIfuns-3.2.9/MIfuns/R/runhead.R |only
MIfuns-3.2.9/MIfuns/R/runmsge.R |only
MIfuns-3.2.9/MIfuns/R/runnm.R |only
MIfuns-3.2.9/MIfuns/R/save.model.R |only
MIfuns-3.2.9/MIfuns/R/sorted.R |only
MIfuns-3.2.9/MIfuns/R/sqrtm.R |only
MIfuns-3.2.9/MIfuns/R/stableMerge.R |only
MIfuns-3.2.9/MIfuns/R/t-max.R |only
MIfuns-3.2.9/MIfuns/R/z%nests%.R |only
MIfuns-3.2.9/MIfuns/R/z[.annotated.R |only
MIfuns-3.2.9/MIfuns/R/z[[.annotated.R |only
MIfuns-3.2.9/MIfuns/data/ctl1.rda |only
MIfuns-3.2.9/MIfuns/data/prob1.txt |only
MIfuns-3.2.9/MIfuns/inst/MIfunsExScripts |only
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MIfuns-3.2.9/MIfuns/man/CheckPositiveVector.Rd |only
MIfuns-3.2.9/MIfuns/man/CheckWS.Rd |only
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MIfuns-3.2.9/MIfuns/man/CreateParametersForSimulation.Rd |only
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MIfuns-3.2.9/MIfuns/man/as.distribution.Rd |only
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MIfuns-3.2.9/MIfuns/man/check.data.Rd |only
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MIfuns-3.2.9/MIfuns/man/panel.covplot.Rd |only
MIfuns-3.2.9/MIfuns/man/parameter.plot.table.Rd |only
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MIfuns-3.2.9/MIfuns/man/save.model.Rd |only
MIfuns-4.0.16/MIfuns/DESCRIPTION | 25
MIfuns-4.0.16/MIfuns/R/CLNR.R | 14
MIfuns-4.0.16/MIfuns/R/NONR.R | 127 ++-
MIfuns-4.0.16/MIfuns/R/PLOTR.R | 430 +++++++++----
MIfuns-4.0.16/MIfuns/R/Tmax.R | 24
MIfuns-4.0.16/MIfuns/R/accept.R | 28
MIfuns-4.0.16/MIfuns/R/as.comment.R |only
MIfuns-4.0.16/MIfuns/R/as.data.frame.block.R |only
MIfuns-4.0.16/MIfuns/R/as.filename.R | 14
MIfuns-4.0.16/MIfuns/R/as.flag.R |only
MIfuns-4.0.16/MIfuns/R/as.keyed.R |only
MIfuns-4.0.16/MIfuns/R/as.nm.R |only
MIfuns-4.0.16/MIfuns/R/as.xml.R |only
MIfuns-4.0.16/MIfuns/R/attribute.R |only
MIfuns-4.0.16/MIfuns/R/bin.R | 9
MIfuns-4.0.16/MIfuns/R/bracket.R |only
MIfuns-4.0.16/MIfuns/R/check.subjects.R |only
MIfuns-4.0.16/MIfuns/R/compute.cwres.R | 65 +
MIfuns-4.0.16/MIfuns/R/constant.R | 14
MIfuns-4.0.16/MIfuns/R/contains.R |only
MIfuns-4.0.16/MIfuns/R/covariatePlots.R |only
MIfuns-4.0.16/MIfuns/R/css.R | 27
MIfuns-4.0.16/MIfuns/R/diagnosticPlots.R |only
MIfuns-4.0.16/MIfuns/R/first.R |only
MIfuns-4.0.16/MIfuns/R/fixedwidth.R |only
MIfuns-4.0.16/MIfuns/R/hash.R | 10
MIfuns-4.0.16/MIfuns/R/ibw.R | 19
MIfuns-4.0.16/MIfuns/R/latest.R |only
MIfuns-4.0.16/MIfuns/R/locf.R | 6
MIfuns-4.0.16/MIfuns/R/lookup.R |only
MIfuns-4.0.16/MIfuns/R/metaSub.character.R | 49 +
MIfuns-4.0.16/MIfuns/R/miTemporal.R | 86 +-
MIfuns-4.0.16/MIfuns/R/nest.R |only
MIfuns-4.0.16/MIfuns/R/ops.keyed.R |only
MIfuns-4.0.16/MIfuns/R/panel.densitystrip.R |only
MIfuns-4.0.16/MIfuns/R/panel.hist.R |only
MIfuns-4.0.16/MIfuns/R/panel.stratify.R |only
MIfuns-4.0.16/MIfuns/R/params.R |only
MIfuns-4.0.16/MIfuns/R/partab.R |only
MIfuns-4.0.16/MIfuns/R/plot.nm.R |only
MIfuns-4.0.16/MIfuns/R/prev.R | 12
MIfuns-4.0.16/MIfuns/R/read.cwres.data.R | 2
MIfuns-4.0.16/MIfuns/R/resample.data.frame.R | 57 +
MIfuns-4.0.16/MIfuns/R/rig.R |only
MIfuns-4.0.16/MIfuns/R/rlog.R | 162 ++--
MIfuns-4.0.16/MIfuns/R/runCommand.R |only
MIfuns-4.0.16/MIfuns/R/runNonmem.R |only
MIfuns-4.0.16/MIfuns/R/runlog.R |only
MIfuns-4.0.16/MIfuns/R/shuffle.R |only
MIfuns-4.0.16/MIfuns/R/simpar.R |only
MIfuns-4.0.16/MIfuns/R/snap.R |only
MIfuns-4.0.16/MIfuns/R/variants.R |only
MIfuns-4.0.16/MIfuns/R/xyplot.ext.R |only
MIfuns-4.0.16/MIfuns/R/zzz.R | 30
MIfuns-4.0.16/MIfuns/inst/example |only
MIfuns-4.0.16/MIfuns/inst/sample |only
MIfuns-4.0.16/MIfuns/inst/test |only
MIfuns-4.0.16/MIfuns/man/AUC.Rd | 21
MIfuns-4.0.16/MIfuns/man/CLNR.Rd | 30
MIfuns-4.0.16/MIfuns/man/MIfuns-package.Rd | 89 --
MIfuns-4.0.16/MIfuns/man/NONR.Rd | 396 +++++++----
MIfuns-4.0.16/MIfuns/man/PLOTR.Rd |only
MIfuns-4.0.16/MIfuns/man/Tmax.Rd | 16
MIfuns-4.0.16/MIfuns/man/Tmin.Rd | 15
MIfuns-4.0.16/MIfuns/man/accept.Rd | 57 -
MIfuns-4.0.16/MIfuns/man/acceptance.Rd | 30
MIfuns-4.0.16/MIfuns/man/as.comment.Rd |only
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MIfuns-4.0.16/MIfuns/man/bracket.Rd |only
MIfuns-4.0.16/MIfuns/man/c.miTemporal.Rd | 107 +--
MIfuns-4.0.16/MIfuns/man/check.subjects.Rd |only
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MIfuns-4.0.16/MIfuns/man/compiler.Rd |only
MIfuns-4.0.16/MIfuns/man/compute.cwres.Rd | 85 +-
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MIfuns-4.0.16/MIfuns/man/metaSub.character.Rd | 126 ++-
MIfuns-4.0.16/MIfuns/man/miTemporal.Rd | 234 ++++---
MIfuns-4.0.16/MIfuns/man/naInContext.Rd | 26
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MIfuns-4.0.16/MIfuns/man/resample.data.frame.Rd | 67 +-
MIfuns-4.0.16/MIfuns/man/rinvchisq.Rd | 19
MIfuns-4.0.16/MIfuns/man/riwish.Rd | 26
MIfuns-4.0.16/MIfuns/man/rlog.Rd | 74 +-
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MIfuns-4.0.16/MIfuns/man/shuffle.Rd |only
MIfuns-4.0.16/MIfuns/man/simblock.Rd |only
MIfuns-4.0.16/MIfuns/man/simpar.Rd |only
MIfuns-4.0.16/MIfuns/man/snap.Rd |only
MIfuns-4.0.16/MIfuns/man/sqrtm.Rd | 17
MIfuns-4.0.16/MIfuns/man/stableMerge.Rd | 29
MIfuns-4.0.16/MIfuns/man/star.Rd |only
MIfuns-4.0.16/MIfuns/man/strain.Rd |only
MIfuns-4.0.16/MIfuns/man/summary.nm.Rd |only
MIfuns-4.0.16/MIfuns/man/synthesis.Rd |only
MIfuns-4.0.16/MIfuns/man/text2decimal.Rd |only
MIfuns-4.0.16/MIfuns/man/variants.Rd |only
MIfuns-4.0.16/MIfuns/man/win.Rd |only
MIfuns-4.0.16/MIfuns/man/xyplot.ext.Rd |only
277 files changed, 1705 insertions(+), 1073 deletions(-)
Path: /cran/updated | permanent link
Title: Subset AR Model Fitting
Diff between FitAR versions 1.80 dated 2010-08-16 and 1.85 dated 2010-08-28
More information about FitAR at CRAN
Description: Comprehensive model building function for identification,
estimation and diagnostic checking for AR and subset AR models.
Two types of subset AR models are supported. One family of
subset AR models, denoted by ARp, is formed by taking subet of
the original AR coefficients and in the other, denoted by ARz,
subsets of the partial autocorrelations are used. The main
advantage of the ARz model is its applicability to very large
order models.
Author: A.I. McLeod and Ying Zhang
Maintainer: A.I. McLeod
DESCRIPTION | 12 +++++-----
NAMESPACE | 5 ++++
NEWS |only
R/BICqLL.R |only
R/GetFitARpLS.R | 4 +--
R/GetFitARpMLE.R | 37 +++++++++++++++++----------------
R/GetLeapsAR.R | 56 +++++++++++++++++++++++++++++++++++++++++++++-----
R/to.binary.R |only
man/BICqLL.Rd |only
man/BoxCox.Arima.Rd | 9 ++++----
man/BoxCox.FitAR.Rd | 5 ----
man/BoxCox.Rd | 11 ++++++++-
man/BoxCox.numeric.Rd | 3 ++
man/BoxCox.ts.Rd | 2 +
man/FitAR-package.Rd | 6 +++--
man/FitAR.Rd | 21 ++++++++++++++++++
man/GetLeapsAR.Rd | 51 +++++++++++++++++++++++++++++++++++++--------
man/bxcx.Rd | 3 +-
18 files changed, 174 insertions(+), 51 deletions(-)
Path: /cran/updated | permanent link
Title: Provides a GUI to several statistical methods useful for causal
assessment.
Diff between CADStat versions 2.2-5 dated 2010-04-08 and 2.2-6 dated 2010-08-28
More information about CADStat at CRAN
Description: Using JGR, provides a GUI to several statistical methods -
scatterplot, boxplot, linear regression, generalized linear
regression, quantile, regression, conditional probability
calculations, and regression trees.
Author: Lester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and
Mark Fitzgerald
Maintainer: Lester Yuan
CADStat-2.2-5/CADStat/data/envdata.or.txt |only
CADStat-2.2-5/CADStat/data/eptpctfn.txt |only
CADStat-2.2-5/CADStat/data/refids.or.txt |only
CADStat-2.2-6/CADStat/DESCRIPTION | 8 ++++----
CADStat-2.2-6/CADStat/data/envdata.OR.txt |only
CADStat-2.2-6/CADStat/data/refids.OR.txt |only
CADStat-2.2-6/CADStat/man/envdata.OR.Rd |only
CADStat-2.2-6/CADStat/man/refids.OR.Rd |only
8 files changed, 4 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Title: A Collection of functions for similarity analysis of vegetation
data
Diff between simba versions 0.3-1 dated 2010-07-25 and 0.3-2 dated 2010-08-27
More information about simba at CRAN
Description: Besides functions for the calculation of similarity and
multiple plot similarity measures with binary data (for
instance presence/absence species data) the package contains
some simple wrapper functions for reshaping species lists into
matrices and vice versa and some other functions for further
processing of similarity data (Mantel-like permutation
procedures) as well as some other useful stuff for vegetation
analysis.
Author: Gerald Jurasinski
Maintainer: Gerald Jurasinski
simba-0.3-1/simba/inst/doc/simba_0.3-1_man.pdf |only
simba-0.3-2/simba/DESCRIPTION | 29 +++++++-------
simba-0.3-2/simba/R/rin.R | 25 ++++++++----
simba-0.3-2/simba/R/simbadocs.R | 2
simba-0.3-2/simba/R/zzz.R |only
simba-0.3-2/simba/inst/ChangeLog | 12 +++++
simba-0.3-2/simba/inst/doc/simba_0.3-2_man.pdf |only
simba-0.3-2/simba/man/abis.Rd | 6 +-
simba-0.3-2/simba/man/auc.Rd | 5 +-
simba-0.3-2/simba/man/bb2num.Rd | 3 -
simba-0.3-2/simba/man/bernina.Rd |only
simba-0.3-2/simba/man/com.sim.Rd | 2
simba-0.3-2/simba/man/dfcor.Rd | 3 -
simba-0.3-2/simba/man/diffmich.Rd | 5 +-
simba-0.3-2/simba/man/diffslope.Rd | 3 -
simba-0.3-2/simba/man/dist.tmp.Rd | 7 ++-
simba-0.3-2/simba/man/occ.time.Rd | 3 -
simba-0.3-2/simba/man/pcol.Rd | 10 ++--
simba-0.3-2/simba/man/rin.Rd | 51 +++++++++++++++----------
simba-0.3-2/simba/man/sim.Rd | 5 +-
simba-0.3-2/simba/man/sim.tmp.Rd | 2
simba-0.3-2/simba/man/simba-package.Rd | 5 +-
simba-0.3-2/simba/man/simbadocs.Rd | 2
23 files changed, 114 insertions(+), 66 deletions(-)
Path: /cran/updated | permanent link
Title: Matrix Algebra on GPU and Multicore Architectures
Diff between magma versions 0.2.1-3 dated 2010-08-20 and 0.2.2-1 dated 2010-08-27
More information about magma at CRAN
Description: Magma matrix classes and methods for parallel processing
of matrix algebra operations. Operations are performed with
algorithms developed by the MAGMA research project. MAGMA aims
to achieve the fastest possible linear algebra libraries on
hybrid multicore CPU and GPU architectures by exploiting their
massive parallelism and minimizing communication latencies.
Author: Brian J Smith
Maintainer: Brian J Smith
ChangeLog | 20 ++++++++++++++++++++
DESCRIPTION | 8 ++++----
INSTALL | 13 +++++++------
configure | 16 +++++++---------
configure.ac | 9 ++-------
inst/CITATION | 8 ++++----
src/magFactors.c | 28 ++++++++++++++++++----------
src/magSolvers.c | 12 ++++++++----
8 files changed, 70 insertions(+), 44 deletions(-)
Path: /cran/updated | permanent link
Title: Interface between GMT Map-Making Software and R
Diff between gmt versions 1.1-4 dated 2010-02-17 and 1.1-6 dated 2010-08-27
More information about gmt at CRAN
Description: Interface between the GMT map-making software and R,
enabling the user to manipulate geographic data within R and
call GMT commands to draw and annotate maps in postscript
format. The 'gmt' package is about interactive data analysis,
rapidly visualizing subsets and summaries of geographic data,
while performing statistical analysis in the R console.
Author: Arni Magnusson
Maintainer: Arni Magnusson
gmt-1.1-4/gmt/INDEX |only
gmt-1.1-6/gmt/DESCRIPTION | 8 ++++----
gmt-1.1-6/gmt/NEWS | 9 +++++++++
gmt-1.1-6/gmt/R/psbar.R | 2 +-
4 files changed, 14 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: Procedures to generate IRT adaptive tests (CAT)
Diff between catR versions 1.0 dated 2010-06-14 and 1.1 dated 2010-08-27
More information about catR at CRAN
Description: The catR package allows the generation of response
patterns under computerized adaptive testing (CAT) framework,
with the choice of several starting rules, stopping rules and
ability estimators.
Author: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada)
Maintainer: David Magis
DESCRIPTION | 8 ++++----
NEWS |only
R/nextItem.R | 21 ++++++++++++++++++---
R/randomCAT.R | 12 +++++++-----
R/testList.R | 14 +++++++++-----
inst/doc/Rd2.pdf |binary
man/nextItem.Rd | 31 ++++++++++++++++++++++++++-----
man/randomCAT.Rd | 27 ++++++++++++++++++---------
man/testList.Rd | 9 ++++-----
9 files changed, 86 insertions(+), 36 deletions(-)
Path: /cran/updated | permanent link
Title: Convenient Tools for Working with Oracle Databases
Diff between ROracleUI versions 1.0-0 dated 2010-01-23 and 1.1-3 dated 2010-08-27
More information about ROracleUI at CRAN
Description: Easy-to-use functions to explore Oracle databases and
import data into R. User interface for the ROracle package.
Author: Arni Magnusson
Maintainer: Arni Magnusson
ROracleUI-1.0-0/ROracleUI/INDEX |only
ROracleUI-1.0-0/ROracleUI/inst |only
ROracleUI-1.1-3/ROracleUI/DESCRIPTION | 12 ++++++------
ROracleUI-1.1-3/ROracleUI/NEWS |only
ROracleUI-1.1-3/ROracleUI/man/ROracleUI-package.Rd | 2 +-
ROracleUI-1.1-3/ROracleUI/man/as.POSIXct.data.frame.Rd | 3 +--
ROracleUI-1.1-3/ROracleUI/man/desc.Rd | 5 ++---
ROracleUI-1.1-3/ROracleUI/man/sql.Rd | 3 +--
ROracleUI-1.1-3/ROracleUI/man/tables.Rd | 1 -
ROracleUI-1.1-3/ROracleUI/man/to_char.Rd | 1 -
ROracleUI-1.1-3/ROracleUI/man/views.Rd | 1 -
11 files changed, 11 insertions(+), 17 deletions(-)
Path: /cran/updated | permanent link
Title: Hierarchical time series
Diff between hts versions 1.3 dated 2010-08-19 and 1.4 dated 2010-08-27
More information about hts at CRAN
Description: Methods for analysing and forecasting hierarchical time
series.
Author: Rob J Hyndman, Roman A Ahmed, and Han Lin Shang
Maintainer: Han Lin Shang
hts-1.3/hts/ChangeLog.txt |only
hts-1.4/hts/CHANGELOG |only
hts-1.4/hts/DESCRIPTION | 8 ++++----
hts-1.4/hts/R/forecast.hts.R | 12 ++++++------
4 files changed, 10 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Title: Bayesian spectral inference
Diff between bspec versions 1.1 dated 2008-04-29 and 1.2 dated 2010-08-27
More information about bspec at CRAN
Description: Bayesian inference on the (discrete) power spectrum of
time series.
Author: Christian Roever
Maintainer: Christian Roever
DESCRIPTION | 11 +++++++----
R/BayesSpecS3.R | 12 +++++++++---
inst/CITATION | 14 +++++++-------
man/acf.Rd | 2 +-
man/bspec.Rd | 2 +-
man/expectation.Rd | 2 +-
man/likelihood.Rd | 2 +-
man/onesided.Rd | 2 +-
man/ppsample.Rd | 2 +-
man/quantile.Rd | 2 +-
man/sample.Rd | 2 +-
man/temper.Rd | 2 +-
man/temperature.Rd | 2 +-
13 files changed, 33 insertions(+), 24 deletions(-)
Path: /cran/updated | permanent link
Title: Power and Sample size based on two one-sided t-tests (TOST) for
bioequivalence studies
Diff between PowerTOST versions 0.7-1 dated 2010-08-12 and 0.7-2 dated 2010-08-27
More information about PowerTOST at CRAN
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies. See
function known.designs() for study designs covered. Moreover
the package contains functions for power and sample size based
on 'expected' power in case of uncertain (estimated)
variability. Added are functions for the power and sample size
for the ratio of two means with normally distributed data on
the original scale (based on Fieller's confidence ('fiducial')
interval).
Author: Detlew Labes
Maintainer: D. Labes
DESCRIPTION | 8 ++++----
NEWS | 3 +++
R/DesignHelpers.R | 6 +++++-
man/PowerTOST-package.Rd | 4 ++--
man/power.RatioF.Rd | 2 +-
man/sampleN.RatioF.Rd | 4 ++--
6 files changed, 17 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Title: Read, write, format Excel 2007 (xlsx) files
Diff between xlsx versions 0.2.2 dated 2010-07-24 and 0.2.3 dated 2010-08-27
More information about xlsx at CRAN
Description: Provide R functions to read/write/format Excel 2007 (xlsx)
file formats.
Author: Adrian A. Dragulescu
Maintainer: Adrian A. Dragulescu
DESCRIPTION | 8 ++++----
NEWS | 11 +++++++++++
R/Cell.R | 16 +++++++++++++---
R/CellStyle.R | 8 ++++----
inst/doc/xlsx.pdf |binary
inst/tests/test.formats.R | 7 ++++++-
inst/tests/test.import.R | 7 +++++--
inst/tests/test_import.xlsx |binary
man/xlsx-package.Rd | 4 ++--
other/make.package.R | 2 +-
10 files changed, 46 insertions(+), 17 deletions(-)
Path: /cran/updated | permanent link
Title: VAR Modelling
Diff between vars versions 1.4-7 dated 2010-03-01 and 1.4-8 dated 2010-08-27
More information about vars at CRAN
Description: Estimation, lag selection, diagnostic testing,
forecasting, causality analysis, forecast error variance
decomposition and impulse response functions of VAR models and
estimation of SVAR/SVEC models.
Author: Bernhard Pfaff
Maintainer: Bernhard Pfaff
DESCRIPTION | 10 +++++-----
R/internal.R | 3 ++-
inst/ChangeLog | 5 +++++
inst/doc/vars.pdf |binary
4 files changed, 12 insertions(+), 6 deletions(-)
Path: /cran/updated | permanent link
Title: Tweedie exponential family models
Diff between tweedie versions 2.0.2 dated 2009-11-17 and 2.0.5 dated 2010-08-27
More information about tweedie at CRAN
Description: Maximum likelihood computations for Tweedie families.
Author: Peter K Dunn
Maintainer: Peter K Dunn
tweedie-2.0.2/tweedie/CITATION |only
tweedie-2.0.5/tweedie/CHANGE.log | 15 +
tweedie-2.0.5/tweedie/DESCRIPTION | 10 -
tweedie-2.0.5/tweedie/R/tweedie.R | 214 ++++++++++++++++-----------
tweedie-2.0.5/tweedie/inst |only
tweedie-2.0.5/tweedie/man/tweedie-package.Rd | 4
tweedie-2.0.5/tweedie/man/tweedie.profile.Rd | 15 +
7 files changed, 165 insertions(+), 93 deletions(-)
Path: /cran/updated | permanent link
Title: R version of GENetic Optimization Using Derivatives
Diff between rgenoud versions 5.6-7 dated 2010-06-01 and 5.7-1 dated 2010-08-27
More information about rgenoud at CRAN
Description: A genetic algorithm plus derivative optimizer
Author: Walter R. Mebane, Jr.
Maintainer: Jasjeet Singh Sekhon
ChangeLog | 23 ++++++++------
DESCRIPTION | 8 ++---
inst/doc/rgenoud.pdf |binary
src/evaluate.cpp | 12 +++----
src/genoud.h | 5 +--
src/operators.cpp | 80 +++++++++++++++++++++++++++++++++++++--------------
src/print_format.cpp | 6 +--
7 files changed, 88 insertions(+), 46 deletions(-)
Path: /cran/updated | permanent link
Title: Routines for fitting kinetic models with one or more state
variables to chemical degradation data
Diff between mkin versions 0.7-6 dated 2010-06-09 and 0.7-8 dated 2010-08-27
More information about mkin at CRAN
Description: Calculation routines based on the FOCUS Kinetics Report
(2006). Includes a function for conveniently defining
differential equation models, choice of the optimisation
methods made available by the FME package (default is a
Levenberg-Marquardt variant). Please note that no warranty is
implied for correctness of results or fitness for a particular
purpose.
Author: Johannes Ranke
Maintainer: Johannes Ranke
mkin-0.7-6/mkin/TODO |only
mkin-0.7-6/mkin/test.R |only
mkin-0.7-8/mkin/DESCRIPTION | 16 +++++---
mkin-0.7-8/mkin/R/mkin_long_to_wide.R | 20 ++++++++++
mkin-0.7-8/mkin/R/mkin_wide_to_long.R | 20 ++++++++++
mkin-0.7-8/mkin/R/mkinerrmin.R | 20 ++++++++++
mkin-0.7-8/mkin/R/mkinfit.R | 46 +++++++++++++++++++++++--
mkin-0.7-8/mkin/R/mkinmod.R | 20 ++++++++++
mkin-0.7-8/mkin/inst/doc/mkin.Rnw | 1
mkin-0.7-8/mkin/inst/doc/mkin.pdf |binary
mkin-0.7-8/mkin/inst/unitTests/runit.mkinfit.R | 20 ++++++++++
mkin-0.7-8/mkin/inst/unitTests/runit.mkinmod.R | 20 ++++++++++
mkin-0.7-8/mkin/man/summary.mkinfit.Rd | 8 +++-
mkin-0.7-8/mkin/tests/doRUnit.R | 2 +
14 files changed, 183 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Title: Tools for reading and handling spatial objects
Diff between maptools versions 0.7-36 dated 2010-08-12 and 0.7-37 dated 2010-08-27
More information about maptools at CRAN
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Stéphane Dray, David Forrest, Michael Friendly, Patrick
Giraudoux, Duncan Golicher, Virgilio Gómez Rubio, Patrick
Hausmann, Thomas Jagger, Sebastian P. Luque, Don MacQueen,
Andrew Niccolai, Tom Short and Ben Stabler
Maintainer: Roger Bivand
DESCRIPTION | 8 ++++----
R/readGPS.R | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: Estimate a Log-Concave Probability Density from iid Observations
Diff between logcondens versions 1.3.5 dated 2009-12-07 and 2.0.0 dated 2010-08-27
More information about logcondens at CRAN
Description: Given independent and identically distributed observations
X(1), ..., X(n), this package allows to compute the maximum
likelihood estimator (MLE) of a density as well as a smoothed
version of it under the assumption that the density is
log-concave, see Rufibach (2007) and Duembgen and Rufibach
(2009). The main function of the package is 'logConDens' that
allows computation of the log-concave MLE and its smoothed
version. In addition, we provide functions to compute (1) the
value of the density and distribution function estimates (MLE
and smoothed) at a given point (2) the characterizing functions
of the estimator, (3) to sample from the estimated
distribution, and (5) to compute a two-sample permutation test
based on log-concave densities. Finally, two datasets that have
been used to illustrate log-concave density estimation are made
available.
Author: Kaspar Rufibach
Maintainer: Kaspar Rufibach
logcondens-1.3.5/logcondens/R/logconSmoothed.R |only
logcondens-1.3.5/logcondens/man/logconSmoothed.Rd |only
logcondens-2.0.0/logcondens/CHANGES | 5
logcondens-2.0.0/logcondens/DESCRIPTION | 42 +++----
logcondens-2.0.0/logcondens/R/J00.R | 28 +++-
logcondens-2.0.0/logcondens/R/J10.R | 27 +++-
logcondens-2.0.0/logcondens/R/J11.R | 31 ++++-
logcondens-2.0.0/logcondens/R/J20.R | 30 ++++-
logcondens-2.0.0/logcondens/R/Lhat_eta.R | 4
logcondens-2.0.0/logcondens/R/LocalCoarsen.R | 10 -
logcondens-2.0.0/logcondens/R/LocalConvexity.R | 4
logcondens-2.0.0/logcondens/R/LocalExtend.R | 11 -
logcondens-2.0.0/logcondens/R/LocalF.R | 4
logcondens-2.0.0/logcondens/R/LocalMLE.R | 29 ++---
logcondens-2.0.0/logcondens/R/LocalNormalize.R | 4
logcondens-2.0.0/logcondens/R/LocalVariance.r |only
logcondens-2.0.0/logcondens/R/Local_LL.R | 4
logcondens-2.0.0/logcondens/R/Local_LL_all.R | 13 --
logcondens-2.0.0/logcondens/R/MLE.R | 64 ++++-------
logcondens-2.0.0/logcondens/R/Q00.R |only
logcondens-2.0.0/logcondens/R/activeSetLogCon.R | 45 ++-----
logcondens-2.0.0/logcondens/R/etaphi.R | 6 -
logcondens-2.0.0/logcondens/R/evaluateLogConDens.R | 88 +++++++++++----
logcondens-2.0.0/logcondens/R/icmaLogCon.R | 41 ++-----
logcondens-2.0.0/logcondens/R/intECDF.R | 16 +-
logcondens-2.0.0/logcondens/R/intF.R | 49 +++++---
logcondens-2.0.0/logcondens/R/isoMean.R | 17 +-
logcondens-2.0.0/logcondens/R/logConDens.r |only
logcondens-2.0.0/logcondens/R/logconTwoSample.r |only
logcondens-2.0.0/logcondens/R/maxDiffCDF.r |only
logcondens-2.0.0/logcondens/R/phieta.R | 6 -
logcondens-2.0.0/logcondens/R/plot.dlc.r |only
logcondens-2.0.0/logcondens/R/preProcess.r |only
logcondens-2.0.0/logcondens/R/qloglin.R | 29 +++--
logcondens-2.0.0/logcondens/R/quadDeriv.R | 20 +--
logcondens-2.0.0/logcondens/R/quantilesLogConDens.R | 46 ++++----
logcondens-2.0.0/logcondens/R/rlogcon.R | 69 +++++-------
logcondens-2.0.0/logcondens/R/robust.R | 17 +-
logcondens-2.0.0/logcondens/R/summary.dlc.r |only
logcondens-2.0.0/logcondens/R/vectorToString.r |only
logcondens-2.0.0/logcondens/inst/doc/logcondens.pdf |binary
logcondens-2.0.0/logcondens/man/Lhat_eta.Rd | 3
logcondens-2.0.0/logcondens/man/Local_LL.Rd | 3
logcondens-2.0.0/logcondens/man/Local_LL_all.Rd | 3
logcondens-2.0.0/logcondens/man/MLE.Rd | 5
logcondens-2.0.0/logcondens/man/Q00.Rd |only
logcondens-2.0.0/logcondens/man/activeSetLogCon.Rd | 66 ++++++-----
logcondens-2.0.0/logcondens/man/activeSetRoutines.Rd | 10 -
logcondens-2.0.0/logcondens/man/evaluateLogConDens.Rd | 47 ++++----
logcondens-2.0.0/logcondens/man/icmaLogCon.Rd | 51 +++++---
logcondens-2.0.0/logcondens/man/intECDF.Rd | 2
logcondens-2.0.0/logcondens/man/intF.Rd | 25 ++--
logcondens-2.0.0/logcondens/man/isoMean.Rd | 3
logcondens-2.0.0/logcondens/man/logConDens.Rd |only
logcondens-2.0.0/logcondens/man/logconTwoSample.Rd |only
logcondens-2.0.0/logcondens/man/logcondens-package.Rd | 97 +++++++++++------
logcondens-2.0.0/logcondens/man/maxDiffCDF.Rd |only
logcondens-2.0.0/logcondens/man/plot.dlc.Rd |only
logcondens-2.0.0/logcondens/man/preProcess.Rd |only
logcondens-2.0.0/logcondens/man/qloglin.Rd | 4
logcondens-2.0.0/logcondens/man/quantilesLogConDens.Rd | 26 ++--
logcondens-2.0.0/logcondens/man/reliability.Rd | 2
logcondens-2.0.0/logcondens/man/reparametrizations.Rd | 4
logcondens-2.0.0/logcondens/man/rlogcon.Rd | 7 -
logcondens-2.0.0/logcondens/man/robust.Rd | 3
logcondens-2.0.0/logcondens/man/summary.dlc.Rd |only
logcondens-2.0.0/logcondens/man/vectorToString.Rd |only
67 files changed, 603 insertions(+), 517 deletions(-)
Path: /cran/updated | permanent link
Title: delftfews R extensions
Diff between delftfews versions 0.3-33 dated 2010-08-13 and 0.3-38 dated 2010-08-27
More information about delftfews at CRAN
Description: a collection of timeseries sets handling functions used
here at work (Nelen en Schuurmans), initially for the Lizard
Scripter.
Author: Mario Frasca
Maintainer: Mario Frasca
DESCRIPTION | 10 +++----
R/augment.R | 4 +--
R/rezoo.R | 4 +--
R/select.R | 35 ++++++++++++++++++---------
R/timeseries-io.R | 17 ++++++-------
inst/RUnit/runit.select.R | 59 ++++++++++++++++++++++++++++++++++++++++++----
6 files changed, 95 insertions(+), 34 deletions(-)
Path: /cran/updated | permanent link
Title: Calculate the consensus clustering result from re-sampled
clustering experiments with the option of using multiple
algorithms and parameter
Diff between clusterCons versions 0.5 dated 2010-08-25 and 0.6 dated 2010-08-27
More information about clusterCons at CRAN
Description: clusterCons is a package containing functions that
generate robustness measures for clusters and cluster
membership based on generating consensus matrices from
bootstrapped clustering experiments in which a random
proportion of rows of the data set are used in each individual
clustering. This allows the user to prioritise clusters and the
members of clusters based on their consistency in this regime.
The functions allow the user to select several algorithms to
use in the re-sampling scheme and with any of the parameters
that the algorithm would normally take.
Author: Dr. T. Ian Simpson, University of Edinburgh
Maintainer: Dr. T. Ian Simpson
DESCRIPTION | 8 ++++----
R/algorithms.R | 18 +++++++++++-------
R/functions.R | 2 +-
man/clusterCons-package.Rd | 4 ++--
4 files changed, 18 insertions(+), 14 deletions(-)
Path: /cran/updated | permanent link
Title: Tools for caching and distributing statistical analyses
Diff between cacher versions 1.1 dated 2009-06-24 and 1.1-1 dated 2010-08-27
More information about cacher at CRAN
Description: This package provides tools for caching statistical
analyses in key-value databases which can subsequently be
distributed over the web.
Author: Roger D. Peng
Maintainer: Roger D. Peng
DESCRIPTION | 12 ++++++------
R/utils.R | 3 ++-
inst/doc/cacher.pdf |binary
3 files changed, 8 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: Tools for microarray data analysis
Diff between anapuce versions 2.1 dated 2009-02-18 and 2.2 dated 2010-08-27
More information about anapuce at CRAN
Description: This package contains functions for
normalisation,differentially analysis of microarray data and
others functions implementing recent methods developed by the
Statistic and Genom Team from UMR 518 AgroParisTech/INRA Appl.
Math. Comput. Sc.
Author: J. Aubert (INRA)
Maintainer: J. Aubert
DESCRIPTION | 28 +++++++++++++++++-----------
R/DiffAnalysis.R | 4 ++--
R/DiffAnalysis.unpaired.R | 6 +++---
R/FileChoice.R | 2 +-
R/Intensity.Norm.R | 2 +-
R/LBI.R | 4 ++--
R/LocalFDR.R | 2 +-
R/MeanBySpot.R | 8 ++++----
R/est.varmixt.R | 2 +-
R/fdr.estimate.eta0.R | 2 +-
R/filterByDefault.R | 2 +-
R/fonctionMobile.R | 2 +-
R/lissageMM.R | 2 +-
R/mixgamma.R | 2 +-
R/normalisation.R | 2 +-
R/rowVars.R | 2 +-
data |only
man/DiffAnalysis.Rd | 14 +++++++++++++-
man/DiffAnalysis.unpaired.Rd | 13 +++++++++++--
man/FileChoice.Rd | 3 +--
man/Intensity.Norm.Rd | 6 +++---
man/LBI.Rd | 3 ++-
man/LocalFDR.Rd | 3 ++-
man/MeanBySpot.Rd | 9 ++++-----
man/anapuce-package.Rd | 14 +++++++-------
man/apo.Rd |only
man/est.varmixt.Rd | 2 --
man/fdr.estimate.eta0.Rd | 10 +++++-----
man/filterByDefault.Rd | 4 +++-
man/fonctionMobile.Rd | 6 ------
man/mixgamma.Rd | 11 ++---------
man/normalisation.Rd | 5 ++++-
man/rowVars.Rd | 2 +-
man/spleen.Rd |only
34 files changed, 97 insertions(+), 80 deletions(-)
Path: /cran/updated | permanent link
Title: Automates the creation of new R statistical analysis projects
Diff between ProjectTemplate versions 0.1-1 dated 2010-08-25 and 0.1-2 dated 2010-08-27
More information about ProjectTemplate at CRAN
Description: The ProjectTemplate package provides a function,
create.project(), that automatically builds a directory for a
new R project with a clean sub-directory structure and
automatic data and library loading tools. The hope is that
standardized data loading, automatic importing of best practice
packages, integrated unit testing and useful nudges towards
keeping a cleanly organized codebase will improve the quality
of R coding.
Author: John Myles White
Maintainer: John Myles White
ProjectTemplate-0.1-1/ProjectTemplate/inst/defaults/boot.R |only
ProjectTemplate-0.1-1/ProjectTemplate/inst/defaults/load_data.R |only
ProjectTemplate-0.1-1/ProjectTemplate/inst/defaults/load_libraries.R |only
ProjectTemplate-0.1-1/ProjectTemplate/inst/defaults/utilities.R |only
ProjectTemplate-0.1-2/ProjectTemplate/ChangeLog |only
ProjectTemplate-0.1-2/ProjectTemplate/DESCRIPTION | 24 ++--
ProjectTemplate-0.1-2/ProjectTemplate/R/create.project.R | 35 ++-----
ProjectTemplate-0.1-2/ProjectTemplate/R/load.project.R |only
ProjectTemplate-0.1-2/ProjectTemplate/R/run.tests.R |only
ProjectTemplate-0.1-2/ProjectTemplate/README.markdown | 49 +++++++++-
ProjectTemplate-0.1-2/ProjectTemplate/TODO | 3
ProjectTemplate-0.1-2/ProjectTemplate/build_script.sh | 4
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/README |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/TODO |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/data |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/diagnostics |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/doc |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/graphs |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/lib |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/profiling |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/reports |only
ProjectTemplate-0.1-2/ProjectTemplate/inst/defaults/tests |only
ProjectTemplate-0.1-2/ProjectTemplate/man/ProjectTemplate-package.Rd | 20 ++--
ProjectTemplate-0.1-2/ProjectTemplate/man/create.project.Rd | 6 -
ProjectTemplate-0.1-2/ProjectTemplate/man/load.project.Rd |only
ProjectTemplate-0.1-2/ProjectTemplate/man/run.tests.Rd |only
ProjectTemplate-0.1-2/ProjectTemplate/tests/1.R | 8 +
27 files changed, 97 insertions(+), 52 deletions(-)
Path: /cran/updated | permanent link
Title: Extension to ggplot2.
Diff between GGally versions 0.2.1 dated 2010-07-30 and 0.2.2 dated 2010-08-27
More information about GGally at CRAN
Description: Package contains templates for different plots to be
combined into a plot matrix.
Author: Barret Schloerke
Maintainer: Barret Schloerke
DESCRIPTION | 8 ++--
NAMESPACE | 1
R/find-combo.r | 3 -
R/gg-plots.r | 16 ++++++++-
R/ggpairs.r | 67 ++++++++++++++++++++++++++--------------
man/Not-Documented |only
man/addAndOverwriteAes.Rd | 6 ++-
man/eval_ggpair.Rd | 22 ++++++++-----
man/find_plot_type.Rd | 14 +++++---
man/getPlot.Rd | 14 +++++---
man/get_plot_type.Rd | 12 ++++---
man/ggally_barDiag.Rd | 15 +++++---
man/ggally_blank.Rd | 15 ++++++--
man/ggally_box.Rd | 14 +++++---
man/ggally_cor.Rd | 15 +++++---
man/ggally_density.Rd | 21 ++++++++----
man/ggally_densityDiag.Rd | 15 +++++---
man/ggally_denstrip.Rd | 14 +++++---
man/ggally_dot.Rd | 14 +++++---
man/ggally_dotAndBox.Rd | 17 ++++++----
man/ggally_facetdensity.Rd | 15 +++++---
man/ggally_facetdensitystrip.Rd | 17 ++++++----
man/ggally_facethist.Rd | 15 +++++---
man/ggally_points.Rd | 14 +++++---
man/ggally_ratio.Rd | 15 ++++++--
man/ggally_smooth.Rd | 15 +++++---
man/ggally_text.Rd | 24 ++++++++------
man/ggfluctuation2.Rd | 23 +++++++++----
man/ggpairs.Rd | 64 +++++++++++++++++++++-----------------
man/is_blank_plot.Rd | 6 ++-
man/make_ggpair_text.Rd |only
man/plot_types.Rd | 13 +++++--
man/print.ggpairs.Rd | 12 ++++---
man/putPlot.Rd | 18 ++++++----
man/vplayout.Rd | 12 ++++---
35 files changed, 370 insertions(+), 196 deletions(-)
Path: /cran/updated | permanent link