Sat, 24 Jun 2017

Package RPostgreSQL updated to version 0.6-2 with previous version 0.4-1 dated 2016-05-08

Title: R Interface to the 'PostgreSQL' Database System
Description: Database interface and 'PostgreSQL' driver for 'R'. This package provides a Database Interface 'DBI' compliant driver for 'R' to access 'PostgreSQL' database systems. In order to build and install this package from source, 'PostgreSQL' itself must be present your system to provide 'PostgreSQL' functionality via its libraries and header files. These files are provided as 'postgresql-devel' package under some Linux distributions. On 'macOS' and 'Microsoft Windows' system the attached 'libpq' library source will be used.
Author: Joe Conway, Dirk Eddelbuettel, Tomoaki Nishiyama, Sameer Kumar Prayaga (during 2008), Neil Tiffin
Maintainer: Tomoaki Nishiyama <tomoakin@staff.kanazawa-u.ac.jp>

Diff between RPostgreSQL versions 0.4-1 dated 2016-05-08 and 0.6-2 dated 2017-06-24

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 RPostgreSQL-0.6-2/RPostgreSQL/ChangeLog                                |   97 
 RPostgreSQL-0.6-2/RPostgreSQL/DESCRIPTION                              |   43 
 RPostgreSQL-0.6-2/RPostgreSQL/MD5                                      |  323 -
 RPostgreSQL-0.6-2/RPostgreSQL/NAMESPACE                                |    6 
 RPostgreSQL-0.6-2/RPostgreSQL/R/PostgreSQL.R                           |   34 
 RPostgreSQL-0.6-2/RPostgreSQL/R/PostgreSQLSupport.R                    |   95 
 RPostgreSQL-0.6-2/RPostgreSQL/R/S4R.R                                  |    2 
 RPostgreSQL-0.6-2/RPostgreSQL/R/dbObjectId.R                           |    4 
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 RPostgreSQL-0.6-2/RPostgreSQL/configure                                | 1892 ++++------
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 RPostgreSQL-0.6-2/RPostgreSQL/inst/ANNOUNCEMENT                        |   12 
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 RPostgreSQL-0.6-2/RPostgreSQL/man/fetch-methods.Rd                     |    2 
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 RPostgreSQL-0.6-2/RPostgreSQL/src/RS-DBI.c                             |    2 
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 RPostgreSQL-0.6-2/RPostgreSQL/src/RS-PQescape.c                        |   83 
 RPostgreSQL-0.6-2/RPostgreSQL/src/RS-PostgreSQL.c                      |  176 
 RPostgreSQL-0.6-2/RPostgreSQL/src/RS-PostgreSQL.h                      |   19 
 RPostgreSQL-0.6-2/RPostgreSQL/src/RS-pgsql-copy.c                      |   40 
 RPostgreSQL-0.6-2/RPostgreSQL/src/RS-pgsql-getResult.c                 |   15 
 RPostgreSQL-0.6-2/RPostgreSQL/src/RS-pgsql-pqexec.c                    |   16 
 RPostgreSQL-0.6-2/RPostgreSQL/src/RS-pgsql-pqexecparams.c              |   16 
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 RPostgreSQL-0.6-2/RPostgreSQL/src/libpq/fe-protocol3.c                 |  655 ++-
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 RPostgreSQL-0.6-2/RPostgreSQL/tests/datetimeTests.R                    |    3 
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More information about RPostgreSQL at CRAN
Permanent link

Package evaluate updated to version 0.10.1 with previous version 0.10 dated 2016-10-11

Title: Parsing and Evaluation Tools that Provide More Details than the Default
Description: Parsing and evaluation tools that make it easy to recreate the command line behaviour of R.
Author: Hadley Wickham [aut], Yihui Xie [cre, ctb], Michael Lawrence [ctb], Thomas Kluyver [ctb], Barret Schloerke [ctb], Adam Ryczkowski [ctb]
Maintainer: Yihui Xie <xie@yihui.name>

Diff between evaluate versions 0.10 dated 2016-10-11 and 0.10.1 dated 2017-06-24

 DESCRIPTION               |   10 +++++-----
 MD5                       |   32 ++++++++++++++++----------------
 NAMESPACE                 |    3 +++
 NEWS                      |    6 ++++++
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 man/line_prompt.Rd        |    1 +
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 man/try_capture_stack.Rd  |    1 +
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 17 files changed, 60 insertions(+), 24 deletions(-)

More information about evaluate at CRAN
Permanent link

Package ddpcr updated to version 1.8 with previous version 1.6 dated 2016-11-11

Title: Analysis and Visualization of Droplet Digital PCR in R and on the Web
Description: An interface to explore, analyze, and visualize droplet digital PCR (ddPCR) data in R. This is the first non-proprietary software for analyzing two-channel ddPCR data. An interactive tool was also created and is available online to facilitate this analysis for anyone who is not comfortable with using R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>

Diff between ddpcr versions 1.6 dated 2016-11-11 and 1.8 dated 2017-06-24

 DESCRIPTION                           |    6 
 MD5                                   |   84 +++++++-----
 NEWS.md                               |   10 +
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More information about ddpcr at CRAN
Permanent link

Fri, 23 Jun 2017

Package visreg updated to version 2.4-1 with previous version 2.4-0 dated 2017-06-09

Title: Visualization of Regression Models
Description: Provides a convenient interface for constructing plots to visualize the fit of regression models arising from a wide variety of models in R ('lm', 'glm', 'coxph', 'rlm', 'gam', 'locfit', 'lmer', 'randomForest', etc.)
Author: Patrick Breheny, Woodrow Burchett
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>

Diff between visreg versions 2.4-0 dated 2017-06-09 and 2.4-1 dated 2017-06-23

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 22 files changed, 352 insertions(+), 229 deletions(-)

More information about visreg at CRAN
Permanent link

Package rLakeAnalyzer updated to version 1.8.7 with previous version 1.8.3 dated 2016-05-20

Title: Lake Physics Tools
Description: Standardized methods for calculating common important derived physical features of lakes including water density based based on temperature, thermal layers, thermocline depth, lake number, Wedderburn number, Schmidt stability and others.
Author: Luke Winslow, Jordan Read, Richard Woolway, Jennifer Brentrup, Taylor Leach, Jake Zwart
Maintainer: Luke Winslow <lawinslow@gmail.com>

Diff between rLakeAnalyzer versions 1.8.3 dated 2016-05-20 and 1.8.7 dated 2017-06-23

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More information about rLakeAnalyzer at CRAN
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Package rcompanion updated to version 1.5.7 with previous version 1.5.6 dated 2017-04-21

Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of Extension Education Program Evaluation in R" and "An R Companion for the Handbook of Biological Statistics". Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>

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Package liureg updated to version 1.01 with previous version 1.0 dated 2017-03-08

Title: Liu Regression with Liu Biasing Parameters and Statistics
Description: Linear Liu regression coefficient's estimation and testing with different Liu related measures such as MSE, R-squared etc.
Author: Muhammad Imdadullah, Dr. Muhammad Aslam
Maintainer: Muhammad Imdadullah <mimdadasad@gmail.com>

Diff between liureg versions 1.0 dated 2017-03-08 and 1.01 dated 2017-06-23

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Package WRTDStidal updated to version 1.1.0 with previous version 1.0.1 dated 2016-11-07

Title: Weighted Regression for Water Quality Evaluation in Tidal Waters
Description: An adaptation for estuaries (tidal waters) of weighted regression on time, discharge, and season to evaluate trends in water quality time series.
Author: Marcus W. Beck [aut, cre]
Maintainer: Marcus W. Beck <mbafs2012@gmail.com>

Diff between WRTDStidal versions 1.0.1 dated 2016-11-07 and 1.1.0 dated 2017-06-23

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Package webutils updated to version 0.6 with previous version 0.5 dated 2017-04-28

Title: Utility Functions for Developing Web Applications
Description: High performance in-memory http request parser for application/json, multipart/form-data, and application/x-www-form-urlencoded. Includes live demo of hosting and parsing multipart forms with either 'httpuv' or 'Rhttpd'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between webutils versions 0.5 dated 2017-04-28 and 0.6 dated 2017-06-23

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Package sf updated to version 0.5-1 with previous version 0.5-0 dated 2017-06-15

Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial vector data. Binds to GDAL for reading and writing data, to GEOS for geometrical operations, and to Proj.4 for projection conversions and datum transformations.
Author: Edzer Pebesma [aut, cre], Roger Bivand [ctb], Ian Cook [ctb], Tim Keitt [ctb], Michael Sumner [ctb], Robin Lovelace [ctb], Hadley Wickham [ctb], Jeroen Ooms [ctb], Etienne Racine [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

Diff between sf versions 0.5-0 dated 2017-06-15 and 0.5-1 dated 2017-06-23

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More information about sf at CRAN
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Package rvg updated to version 0.1.4 with previous version 0.1.3 dated 2017-03-12

Title: R Graphics Devices for Vector Graphics Output
Description: Vector Graphics devices for 'SVG', 'DrawingML' for Microsoft Word, PowerPoint and Excel. Functions extending package 'officer' are provided to embed 'DrawingML' graphics into 'Microsoft PowerPoint' documents.
Author: David Gohel [aut, cre], Bob Rudis [ctb] (the javascript code used by function set_attr), Francois Brunetti [ctb] (clipping algorithms)
Maintainer: David Gohel <david.gohel@ardata.fr>

Diff between rvg versions 0.1.3 dated 2017-03-12 and 0.1.4 dated 2017-06-23

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More information about rvg at CRAN
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Package RSocrata updated to version 1.7.3-2 with previous version 1.7.2-12 dated 2017-04-19

Title: Download or Upload 'Socrata' Data Sets
Description: Provides easier interaction with Socrata open data portals <http://dev.socrata.com>. Users can provide a 'Socrata' data set resource URL, or a 'Socrata' Open Data API (SoDA) web query, or a 'Socrata' "human-friendly" URL, returns an R data frame. Converts dates to 'POSIX' format and manages throttling by 'Socrata'. Users can upload data to Socrata portals directly from R.
Author: Hugh Devlin, Ph. D., Tom Schenk, Jr., and John Malc
Maintainer: "Tom Schenk Jr." <developers@cityofchicago.org>

Diff between RSocrata versions 1.7.2-12 dated 2017-04-19 and 1.7.3-2 dated 2017-06-23

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Package precrec updated to version 0.8.0 with previous version 0.7.1 dated 2017-04-07

Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics) curves.
Author: Takaya Saito [aut, cre], Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>

Diff between precrec versions 0.7.1 dated 2017-04-07 and 0.8.0 dated 2017-06-23

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 precrec-0.8.0/precrec/tests/testthat/test_g_datamatrix1_curves.R     |   95 ++++
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Package BioInstaller updated to version 0.1.2 with previous version 0.1.1 dated 2017-05-25

Title: Lightweight Biology Software Installer
Description: Can be used to install and download massive bioinformatics analysis softwares and databases, such as NGS reads mapping tools with its required databases.
Author: Jianfeng Li [aut, cre]
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>

Diff between BioInstaller versions 0.1.1 dated 2017-05-25 and 0.1.2 dated 2017-06-23

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Package dartR updated to version 0.80 with previous version 0.79 dated 2017-06-23

Title: Importing and Analysing Snp and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis
Description: Functions are provided that facilitate the import and analysis of snp and silicodart (presence/absence) data. The main focus is on data generated by DarT (Diversity Arrays Technology). However, once SNP or related fragment presence/absence data from any source is imported into a genlight object many of the functions can be used. Functions are available for input and output of snp and silicodart data, for reporting on and filtering on various criteria (e.g. CallRate, Heterozygosity, Reproducibility, maximum allele frequency). Advanced filtering is based on Linkage Disequilibrium and HWE. Other functions are available for visualization after PCoA, or to facilitate transfer of data between genlight/genind objects and newhybrids, related, phylip packages etc.
Author: Bernd Gruber [aut, cre], Arthur Georges [aut], Peter J. Unmack [ctb], Oliver Berry [ctb]
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>

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More information about dartR at CRAN
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Package bigrquery updated to version 0.4.0 with previous version 0.3.0 dated 2016-06-28

Title: An Interface to Google's 'BigQuery' 'API'
Description: Easily talk to Google's 'BigQuery' database from R.
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package bmlm updated to version 1.3.0 with previous version 1.2.10 dated 2017-02-17

Title: Bayesian Multilevel Mediation
Description: Easy estimation of Bayesian multilevel mediation models with Stan.
Author: Matti Vuorre [aut, cre]
Maintainer: Matti Vuorre <mv2521@columbia.edu>

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Package spsann updated to version 2.1-0 with previous version 2.0-0 dated 2016-03-15

Title: Optimization of Sample Configurations using Spatial Simulated Annealing
Description: Methods to optimize sample configurations using spatial simulated annealing. Multiple objective functions are implemented for various purposes, such as variogram estimation, spatial trend estimation and spatial interpolation. A general purpose spatial simulated annealing function enables the user to define his/her own objective function. Solutions for augmenting existing sample configurations and solving multi-objective optimization problems are available as well.
Author: Alessandro Samuel-Rosa [aut, cre], Lucia Helena Cunha dos Anjos [ths], Gustavo de Mattos Vasques [ths], Gerard B M Heuvelink [ths], Edzer Pebesma [ctb], Jon Skoien [ctb], Joshua French [ctb], Pierre Roudier [ctb], Dick Brus [ctb], Murray Lark [ctb]
Maintainer: Alessandro Samuel-Rosa <alessandrosamuelrosa@gmail.com>

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Package spmoran updated to version 0.1.1 with previous version 0.1.0 dated 2017-03-12

Title: Moran's Eigenvector-Based Spatial Regression Models
Description: Functions for estimating fixed and random effects eigenvector spatial filtering models.
Author: Daisuke Murakami
Maintainer: Daisuke Murakami <murakami_daisuke_t@yahoo.co.jp>

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Package reticulate updated to version 0.9 with previous version 0.8 dated 2017-05-22

Title: R Interface to Python
Description: R interface to Python modules, classes, and functions. When calling into Python R data types are automatically converted to their equivalent Python types. When values are returned from Python to R they are converted back to R types. Compatible with all versions of Python >= 2.7.
Author: JJ Allaire [aut, cre], Kevin Ushey [ctb], RStudio [cph, fnd], Yuan Tang [aut, cph], Dirk Eddelbuettel [ctb, cph], Bryan Lewis [ctb, cph], Marcus Geelnard [aut, cph] (TinyThread library, http://tinythreadpp.bitsnbites.eu/)
Maintainer: JJ Allaire <jj@rstudio.com>

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Package memapp updated to version 2.2 with previous version 2.1 dated 2017-06-08

Title: The Moving Epidemic Method Web Application
Description: Web application created in the Shiny framework for the 'mem' R package.
Author: Jose E. Lozano [aut, cre]
Maintainer: Jose E. Lozano <lozalojo@gmail.com>

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Package mem updated to version 2.8 with previous version 2.7 dated 2017-06-08

Title: The Moving Epidemic Method R Package
Description: Tools to model influenza epidemics and to monitor influenza surveillance.
Author: Jose E. Lozano [aut, cre]
Maintainer: Jose E. Lozano <lozalojo@gmail.com>

Diff between mem versions 2.7 dated 2017-06-08 and 2.8 dated 2017-06-23

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Package fsia updated to version 1.1.1 with previous version 1.1 dated 2016-12-07

Title: Import and Analysis of OMR Data from FormScanner
Description: Import data of tests and questionnaires from FormScanner. FormScanner is an open source software that converts scanned images to data using optical mark recognition (OMR) and it can be downloaded from <http://sourceforge.net/projects/formscanner/>. The spreadsheet file created by FormScanner is imported in a convenient format to perform the analyses provided by the package. These analyses include the conversion of multiple responses to binary (correct/incorrect) data, the computation of the number of corrected responses for each subject or item, scoring using weights,the computation and the graphical representation of the frequencies of the responses to each item and the report of the responses of a few subjects.
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>

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Package rem updated to version 1.2.8 with previous version 1.1.2 dated 2016-02-19

Title: Relational Event Models (REM)
Description: Calculate endogenous network effects in event sequences and fit relational event models (REM): Using network event sequences (where each tie between a sender and a target in a network is time-stamped), REMs can measure how networks form and evolve over time. Endogenous patterns such as popularity effects, inertia, similarities, cycles or triads can be calculated and analyzed over time.
Author: Laurence Brandenberger
Maintainer: Laurence Brandenberger <laurence.brandenberger@eawag.ch>

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Package nmaINLA updated to version 0.1.1 with previous version 0.1.0 dated 2017-06-20

Title: Network Meta-Analysis using Integrated Nested Laplace Approximations
Description: Performs network meta-analysis using integrated nested Laplace approximations ('INLA'). Includes methods to assess the heterogeneity and inconsistency in the network. Contains more than ten different network meta-analysis data. 'INLA' package can be obtained from <http://www.r-inla.org>. We recommend the testing version.
Author: Burak Kuersad Guenhan [aut, cre]
Maintainer: Burak Kuersad Guenhan <burak.gunhan@med.uni-goettingen.de>

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Package mljar updated to version 0.1.1 with previous version 0.1.0 dated 2017-06-01

Title: R API for MLJAR
Description: Provides an R API wrapper for 'mljar.com', a web service allowing for on-line training for machine learning models (see <https://mljar.com> for more information).
Author: Dominik Krzemiński <raymon92@gmail.com>
Maintainer: Piotr Płoński <contact@mljar.com>

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Package h2o updated to version 3.10.5.2 with previous version 3.10.4.6 dated 2017-05-02

Title: R Interface for H2O
Description: R scripting functionality for H2O, the open source math engine for big data that computes parallel distributed machine learning algorithms such as generalized linear models, gradient boosting machines, random forests, and neural networks (deep learning) within various cluster environments.
Author: The H2O.ai team
Maintainer: Tom Kraljevic <tomk@0xdata.com>

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Package odbc updated to version 1.1.0 with previous version 1.0.1 dated 2017-02-07

Title: Connect to ODBC Compatible Databases (using the DBI Interface)
Description: A DBI-compatible interface to ODBC databases.
Author: Jim Hester [aut, cre], Hadley Wickham [aut], lexicalunit [cph] (nanodbc library), Google Inc. [cph] (cctz library), RStudio [cph, fnd]
Maintainer: Jim Hester <james.hester@rstudio.com>

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Package imputeTestbench updated to version 3.0.1 with previous version 3.0.0 dated 2016-11-03

Title: Test Bench for the Comparison of Imputation Methods
Description: Provides a test bench for the comparison of missing data imputation methods in uni-variate time series. Imputation methods are compared using different error metrics. Proposed imputation methods and alternative error metrics can be used.
Author: Neeraj Bokde [aut], Marcus W. Beck [cre, aut]
Maintainer: Marcus W. Beck <mbafs2012@gmail.com>

Diff between imputeTestbench versions 3.0.0 dated 2016-11-03 and 3.0.1 dated 2017-06-23

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Package corset updated to version 0.1-4 with previous version 0.1-3 dated 2017-03-29

Title: Arbitrary Bounding of Series and Time Series Objects
Description: Set of methods to constrain numerical series and time series within arbitrary boundaries.
Author: Fran Urbano
Maintainer: Fran Urbano <viraltux@gmail.com>

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Package vdmR updated to version 0.2.4 with previous version 0.2.3 dated 2016-12-05

Title: Visual Data Mining Tools for R
Description: This provides web-based visual data-mining tools by adding interactive functions to 'ggplot2' graphics. Brushing and linking between the multiple plots is one of the main feature of this package. Currently scatter plots, histograms, parallel coordinate plots and choropleth maps are supported.
Author: Tomokazu Fujino
Maintainer: Tomokazu Fujino <fujino@fwu.ac.jp>

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Package surv2sampleComp updated to version 1.0-5 with previous version 1.0-4 dated 2014-07-10

Title: Inference for Model-Free Between-Group Parameters for Censored Survival Data
Description: Performs inference of several model-free group contrast measures, which include difference/ratio of cumulative incidence rates at given time points, quantiles, and restricted mean survival times (RMST). Two kinds of covariate adjustment procedures (i.e., regression and augmentation) for inference of the metrics based on RMST are also included.
Author: Lu Tian, Hajime Uno, Miki Horiguchi
Maintainer: Miki Horiguchi <horiguchimiki@gmail.com>

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Package JumpTest updated to version 0.0.1 with previous version 0.0.0.9 dated 2017-06-22

Title: Financial Jump Detection
Description: A fast simulation on stochastic volatility model, with jump tests, p-values pooling, and FDR adjustments.
Author: Kaiqiao Li [aut, cre], Pei Fen Kuan [aut], Kan He [ctb], Lizhou Nie [ctb], Wei Zhu [ctb]
Maintainer: Kaiqiao Li <kaiqiao.li@stonybrook.edu>

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Thu, 22 Jun 2017

Package srvyr updated to version 0.2.2 with previous version 0.2.1 dated 2017-04-26

Title: 'dplyr'-Like Syntax for Summary Statistics of Survey Data
Description: Use piping, verbs like 'group_by' and 'summarize', and other 'dplyr' inspired syntactic style when calculating summary statistics on survey data using functions from the 'survey' package.
Author: Greg Freedman Ellis [aut, cre]
Maintainer: Greg Freedman Ellis <greg.freedman@gmail.com>

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Package survey updated to version 3.32-1 with previous version 3.32 dated 2017-06-07

Title: Analysis of Complex Survey Samples
Description: Summary statistics, two-sample tests, rank tests, generalised linear models, cumulative link models, Cox models, loglinear models, and general maximum pseudolikelihood estimation for multistage stratified, cluster-sampled, unequally weighted survey samples. Variances by Taylor series linearisation or replicate weights. Post-stratification, calibration, and raking. Two-phase subsampling designs. Graphics. PPS sampling without replacement. Principal components, factor analysis.
Author: Thomas Lumley
Maintainer: "Thomas Lumley" <t.lumley@auckland.ac.nz>

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Package IntegratedMRF updated to version 1.1.8 with previous version 1.1.5 dated 2016-08-10

Title: Integrated Prediction using Uni-Variate and Multivariate Random Forests
Description: An implementation of a framework for drug sensitivity prediction from various genetic characterizations using ensemble approaches. Random Forests or Multivariate Random Forest predictive models can be generated from each genetic characterization that are then combined using a Least Square Regression approach. It also provides options for the use of different error estimation approaches of Leave-one-out, Bootstrap, N-fold cross validation and 0.632+Bootstrap along with generation of prediction confidence interval using Jackknife-after-Bootstrap approach.
Author: Raziur Rahman, Ranadip Pal
Maintainer: Raziur Rahman <razeeebuet@gmail.com>

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Package corpus updated to version 0.7.0 with previous version 0.6.0 dated 2017-06-06

Title: Text Corpus Analysis
Description: Text corpus data analysis, with full support for Unicode. Functions for reading data from newline-delimited JSON files, for normalizing and tokenizing text, for searching for term occurrences, and for computing term occurrence frequencies (including n-grams).
Author: Patrick O. Perry [aut, cre], Martin Porter and Richard Boulton [ctb, cph] (Snowball), Unicode, Inc. [ctb, cph] (Unicode Character Database)
Maintainer: Patrick O. Perry <pperry@stern.nyu.edu>

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Package templates updated to version 0.2.0 with previous version 0.1.0 dated 2017-01-07

Title: A System for Working with Templates
Description: Provides tools to work with template code and text in R. It aims to provide a simple substitution mechanism for R-expressions inside these templates. Templates can be written in other languages like 'SQL', can simply be represented by characters in R, or can themselves be R-expressions or functions.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>

Diff between templates versions 0.1.0 dated 2017-01-07 and 0.2.0 dated 2017-06-22

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Package solvebio updated to version 0.4.1 with previous version 0.4.0 dated 2017-06-19

Title: The Official SolveBio API Client for R
Description: R language bindings for SolveBio's API. SolveBio is a biomedical knowledge hub that enables life science organizations to collect and harmonize the complex, disparate "multi-omic" data essential for today's R&D and BI needs. For more information, visit <https://www.solvebio.com>.
Author: David Caplan
Maintainer: David Caplan <dcaplan@solvebio.com>

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Package treeman updated to version 1.1 with previous version 1.0 dated 2016-04-17

Title: Phylogenetic Tree Manipulation Class and Methods
Description: S4 class and methods for intuitive and efficient phylogenetic tree manipulation.
Author: D.J. Bennett
Maintainer: D.J. Bennett <dominic.john.bennett@gmail.com>

Diff between treeman versions 1.0 dated 2016-04-17 and 1.1 dated 2017-06-22

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Package metafor updated to version 2.0-0 with previous version 1.9-9 dated 2016-09-25

Title: Meta-Analysis Package for R
Description: A comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect sizes or outcome measures, fit fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, L'Abbe, Baujat, GOSH plots). For meta-analyses of binomial and person-time data, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects logistic and Poisson regression models). Finally, the package provides functionality for fitting meta-analytic multivariate/multilevel models that account for non-independent sampling errors and/or true effects (e.g., due to the inclusion of multiple treatment studies, multiple endpoints, or other forms of clustering). Network meta-analyses and meta-analyses accounting for known correlation structures (e.g., due to phylogenetic relatedness) can also be conducted.
Author: Wolfgang Viechtbauer [aut, cre]
Maintainer: Wolfgang Viechtbauer <wvb@metafor-project.org>

Diff between metafor versions 1.9-9 dated 2016-09-25 and 2.0-0 dated 2017-06-22

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 metafor-2.0-0/metafor/NAMESPACE                                                      |    9 
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More information about metafor at CRAN
Permanent link

Package coin updated to version 1.2-0 with previous version 1.1-3 dated 2016-11-28

Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems.
Author: Torsten Hothorn [aut, cre], Kurt Hornik [aut], Mark A. van de Wiel [aut], Henric Winell [aut], Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between coin versions 1.1-3 dated 2016-11-28 and 1.2-0 dated 2017-06-22

 DESCRIPTION                            |   11 
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More information about coin at CRAN
Permanent link

Package red updated to version 1.1.1 with previous version 1.1.0 dated 2017-06-20

Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction risk of species according to the IUCN (International Union for Conservation of Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>

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Package dplyr updated to version 0.7.1 with previous version 0.7.0 dated 2017-06-09

Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame like objects, both in memory and out of memory.
Author: Hadley Wickham [aut, cre], Romain Francois [aut], Lionel Henry [aut], Kirill Müller [aut], RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package KappaGUI updated to version 1.2.1 with previous version 1.2 dated 2015-03-26

Title: GUI for Cohen's and Fleiss' Kappa
Description: Offers a complete and interactive GUI to work out Cohen's and Fleiss' Kappa.
Author: Frederic Santos
Maintainer: Frederic Santos <frederic.santos@u-bordeaux.fr>

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Package excerptr updated to version 1.3.0 with previous version 1.2.0 dated 2017-05-28

Title: Excerpt Structuring Comments from Your Code File and Set a Table of Contents
Description: This is an R interface to the python package 'excerpts' (<https://pypi.python.org/pypi/excerpts>).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <adc-r@arcor.de>

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Package configr updated to version 0.3.0 with previous version 0.2.3 dated 2017-05-26

Title: An Implementation of Parsing and Writing Configuration File (JSON/INI/YAML/TOML)
Description: Implements the JSON, INI, YAML and TOML parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'.
Author: Jianfeng Li [aut, cre]
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>

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Package SPAtest updated to version 1.1.1 with previous version 1.1.0 dated 2017-03-30

Title: Score Test Based on Saddlepoint Approximation
Description: Performs score test using saddlepoint approximation to estimate the null distribution.
Author: Rounak Dey, Seunggeun Lee
Maintainer: Rounak Dey <deyrnk@umich.edu>

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Package permGS updated to version 0.2.4 with previous version 0.2.3 dated 2017-01-24

Title: Permutational Group Sequential Test for Time-to-Event Data
Description: Permutational group-sequential tests for time-to-event data based on the log-rank test statistic. Supports exact permutation test when the censoring distributions are equal in the treatment and the control group and approximate imputation-permutation methods when the censoring distributions are different.
Author: Matthias Brueckner [aut, cre], Martin Posch [aut], Franz Koenig [aut]
Maintainer: Matthias Brueckner <matthias.brueckner@posteo.de>

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Package OpenML updated to version 1.4 with previous version 1.3 dated 2017-03-30

Title: Exploring Machine Learning Better, Together
Description: 'OpenML.org' is an online machine learning platform where researchers can easily download and upload data sets, share machine learning tasks and experiments and organize them online to work and collaborate more effectively. We provide an R interface to the OpenML REST API in order to download and upload data sets, tasks, flows and runs, see <http://www.openml.org/guide> for more information.
Author: Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>, Bernd Bischl <bernd_bischl@gmx.net>, Dominik Kirchhoff <dom.kirchhoff@gmail.com>, Michel Lang <michellang@gmail.com>, Benjamin Hofner <benjamin.hofner@fau.de>, Jakob Bossek <j.bossek@gmail.com>, Pascal Kerschke <kerschke@uni-muenster.de>, Joaquin Vanschoren <joaquin.vanschoren@gmail.com>
Maintainer: Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>

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Package equateIRT updated to version 2.0-3 with previous version 2.0-2 dated 2017-03-30

Title: Direct, Chain and Average Equating Coefficients with Standard Errors Using IRT Methods
Description: Computation of direct, chain and average (bisector) equating coefficients with standard errors using Item Response Theory (IRT) methods for dichotomous items. Test scoring can be performed by true score equating and observed score equating methods.
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>

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Package BiodiversityR updated to version 2.8-3 with previous version 2.8-2 dated 2017-05-09

Title: Package for Community Ecology and Suitability Analysis
Description: Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
Author: Roeland Kindt
Maintainer: Roeland Kindt <R.KINDT@CGIAR.ORG>

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Package nanotime updated to version 0.2.0 with previous version 0.1.2 dated 2017-03-27

Title: Nanosecond-Resolution Time for R
Description: Full 64-bit resolution date and time support with resolution up to nanosecond granularity is provided, with easy transition to and from the standard 'POSIXct' type.
Author: Dirk Eddelbuettel and Leonardo Silvestri
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package explor updated to version 0.3.2 with previous version 0.3.1 dated 2016-12-15

Title: Interactive Interfaces for Results Exploration
Description: Shiny interfaces and graphical functions for multivariate analysis results exploration.
Author: Julien Barnier [aut, cre]
Maintainer: Julien Barnier <julien.barnier@ens-lyon.fr>

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Package swapClass updated to version 1.0.1 with previous version 1.0 dated 2017-06-20

Title: A Null Model Adapted to Abundance Class Data in Ecology
Description: A null model randomizing semi-quantitative multi-classes (or ordinal) data by swapping sub-matrices while both the row and the column marginal sums are held constant.
Author: Benjamin Borgy, Remi Perronne, Xavier Reboud
Maintainer: Benjamin Borgy <benjamin.borgy@gmail.com>

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Package metamisc updated to version 0.1.5 with previous version 0.1.4 dated 2017-03-31

Title: Diagnostic and Prognostic Meta-Analysis
Description: Meta-analysis of diagnostic and prognostic modeling studies. Summarize estimates of diagnostic test accuracy and prediction model performance. Validate, update and combine published prediction models.
Author: Thomas Debray
Maintainer: Thomas Debray <thomas.debray@gmail.com>

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Package tseries updated to version 0.10-42 with previous version 0.10-41 dated 2017-05-29

Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut], Kurt Hornik [aut, cre], Blake LeBaron [ctb] (BDS test code)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Wed, 21 Jun 2017

Package neotoma updated to version 1.7.0 with previous version 1.6.2 dated 2016-09-22

Title: Access to the Neotoma Paleoecological Database Through R
Description: Access paleoecological datasets from the Neotoma Paleoecological Database using the published API (<http://api.neotomadb.org/>). The functions in this package access various pre-built API functions and attempt to return the results from Neotoma in a usable format for researchers and the public.
Author: Simon J. Goring [aut, cre], Gavin L. Simpson [aut], Jeremiah P. Marsicek [ctb], Karthik Ram [aut], Luke Sosalla [ctb]
Maintainer: Simon J. Goring <goring@wisc.edu>

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Package ltmle updated to version 0.9-9-3 with previous version 0.9-9 dated 2016-11-17

Title: Longitudinal Targeted Maximum Likelihood Estimation
Description: Targeted Maximum Likelihood Estimation (TMLE) of treatment/censoring specific mean outcome or marginal structural model for point-treatment and longitudinal data.
Author: Joshua Schwab [aut, cre], Samuel Lendle [aut], Maya Petersen [aut], Mark van der Laan [aut], Susan Gruber [ctb]
Maintainer: Joshua Schwab <joshuaschwab@yahoo.com>

Diff between ltmle versions 0.9-9 dated 2016-11-17 and 0.9-9-3 dated 2017-06-21

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Package IMIFA updated to version 1.3.0 with previous version 1.2.1 dated 2017-05-29

Title: Fitting, Diagnostics, and Plotting Functions for Infinite Mixtures of Infinite Factor Analysers and Related Models
Description: Provides flexible Bayesian estimation of Infinite Mixtures of Infinite Factor Analysers and related models, for nonparametrically clustering high-dimensional data, introduced by Murphy et al. (2017) <arXiv:1701.07010>. The IMIFA model conducts Bayesian nonparametric model-based clustering with factor analytic covariance structures without recourse to model selection criteria to choose the number of clusters or cluster-specific latent factors, mostly via efficient Gibbs updates. Model-specific diagnostic tools are also provided, as well as many options for plotting results and conducting posterior inference on parameters of interest.
Author: Keefe Murphy [aut, cre], Isobel Claire Gormley [ctb], Cinzia Viroli [ctb]
Maintainer: Keefe Murphy <keefe.murphy@ucd.ie>

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Package implyr updated to version 0.2.0 with previous version 0.1.0 dated 2017-03-24

Title: R Interface for Apache Impala
Description: 'SQL' back-end to 'dplyr' for Apache Impala (incubating), the massively parallel processing query engine for Apache 'Hadoop'. Impala enables low-latency 'SQL' queries on data stored in the 'Hadoop' Distributed File System '(HDFS)', Apache 'HBase', Apache 'Kudu', and Amazon Simple Storage Service '(S3)'. See <https://impala.apache.org> for more information about Impala.
Author: Ian Cook [aut, cre], Cloudera [cph]
Maintainer: Ian Cook <ian@cloudera.com>

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Package ngspatial updated to version 1.2 with previous version 1.1-3 dated 2017-01-02

Title: Fitting the Centered Autologistic and Sparse Spatial Generalized Linear Mixed Models for Areal Data
Description: Provides tools for analyzing spatial data, especially non- Gaussian areal data. The current version supports the sparse restricted spatial regression model of Hughes and Haran (2013) <DOI:10.1111/j.1467-9868.2012.01041.x>, the centered autologistic model of Caragea and Kaiser (2009) <DOI:10.1198/jabes.2009.07032>, and the Bayesian spatial filtering model of Hughes (2017) <arXiv:1706.04651>.
Author: John Hughes <jphughesjr@gmail.com> and Xiaohui Cui
Maintainer: John Hughes <jphughesjr@gmail.com>

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Package convexjlr updated to version 0.5.1 with previous version 0.5.0 dated 2017-06-19

Title: Disciplined Convex Programming in R using Convex.jl
Description: Package convexjlr provides a simple high-level wrapper for Julia package 'Convex.jl' (see <https://github.com/JuliaOpt/Convex.jl> for more information), which makes it easy to describe and solve convex optimization problems in R. The problems can be dealt with include: linear programs, second-order cone programs, semidefinite programs, exponential cone programs.
Author: Changcheng Li [aut, cre]
Maintainer: Changcheng Li <cxl508@psu.edu>

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Package foreign updated to version 0.8-69 with previous version 0.8-68 dated 2017-04-24

Title: Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ...
Description: Reading and writing data stored by some versions of 'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', and for reading and writing some 'dBase' files.
Author: R Core Team [aut, cph, cre], Roger Bivand [ctb, cph], Vincent J. Carey [ctb, cph], Saikat DebRoy [ctb, cph], Stephen Eglen [ctb, cph], Rajarshi Guha [ctb, cph], Swetlana Herbrandt [ctb], Nicholas Lewin-Koh [ctb, cph], Mark Myatt [ctb, cph], Ben Pfaff [ctb], Brian Quistorff [ctb], Frank Warmerdam [ctb, cph], Stephen Weigand [ctb, cph], Free Software Foundation, Inc. [cph]
Maintainer: R Core Team <R-core@R-project.org>

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Package mpoly updated to version 1.0.5 with previous version 1.0.4 dated 2017-05-07

Title: Symbolic Computation and More with Multivariate Polynomials
Description: Symbolic computing with multivariate polynomials in R.
Author: David Kahle [aut, cre]
Maintainer: David Kahle <david.kahle@gmail.com>

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Package glue updated to version 1.1.1 with previous version 1.1.0 dated 2017-06-13

Title: Interpreted String Literals
Description: An implementation of interpreted string literals, inspired by Python's Literal String Interpolation <https://www.python.org/dev/peps/pep-0498/> and Docstrings <https://www.python.org/dev/peps/pep-0257/> and Julia's Triple-Quoted String Literals <https://docs.julialang.org/en/stable/manual/strings/#triple-quoted-string-literals>.
Author: Jim Hester [aut, cre]
Maintainer: Jim Hester <james.f.hester@gmail.com>

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Package vein updated to version 0.2.1-8 with previous version 0.2.1-4 dated 2017-05-14

Title: Vehicular Emissions Inventories
Description: Emissions inventories elaboration and visualization, consists the three stages, pre-processing activity data, processing or estimating the emissions and post-processing of emissions in maps and databases.
Author: Sergio Ibarra Espinosa <zergioibarra@gmail.com>
Maintainer: Sergio Ibarra Espinosa <zergioibarra@gmail.com>

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Package gk updated to version 0.5.0 with previous version 0.4.0 dated 2017-02-04

Title: g-and-k and g-and-h Distribution Functions
Description: Functions for the g-and-k and generalised g-and-h distributions.
Author: Dennis Prangle [aut, cre, cph]
Maintainer: Dennis Prangle <dennis.prangle@gmail.com>

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Package Delta updated to version 0.1.1.1 with previous version 0.1.0.1 dated 2017-06-06

Title: Measure of Agreement Between Two Raters
Description: Measure of agreement Delta was originally by Martín & Femia (2004) <DOI:10.1348/000711004849268>. Since then has been considered as agreement measure for different fields, since their behavior is usually better than the usual Kappa index by Cohen (1960) <DOI:10.1177/001316446002000104>. The main issue with Delta is that can not be computed by hand contrary to Kappa.
Author: Antonio Rodriguez [aut, cre]
Maintainer: Antonio Rodriguez <tonirodriguezcontesti@gmail.com>

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Package rstream updated to version 1.3.5 with previous version 1.3.4 dated 2015-08-19

Title: Streams of Random Numbers
Description: Unified object oriented interface for multiple independent streams of random numbers from different sources.
Author: Josef Leydold <josef.leydold@wu.ac.at>
Maintainer: Josef Leydold <josef.leydold@wu.ac.at>

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Package oceanmap updated to version 0.0.8 with previous version 0.0.6 dated 2017-04-28

Title: A Plotting Toolbox for 2D Oceanographic Data
Description: Plotting toolbox for 2D oceanographic data (satellite data, sst, chla, ocean fronts & bathymetry). Recognized classes and formats include ncdf4, Raster, '.nc' and '.gz' files.
Author: Robert K. Bauer
Maintainer: Robert K. Bauer <robert.bauer@ird.fr>

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Package hts updated to version 5.1.4 with previous version 5.1.0 dated 2017-06-18

Title: Hierarchical and Grouped Time Series
Description: Methods for analysing and forecasting hierarchical and grouped time series.
Author: Rob Hyndman [aut], Alan Lee [aut] (Fast computation using recursive methods), Earo Wang [aut, cre], Shanika Wickramasuriya [ctb, cph] (Forecasting via trace minimization)
Maintainer: Earo Wang <earo.wang@gmail.com>

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Package HSAUR2 updated to version 1.1-16 with previous version 1.1-15 dated 2017-02-28

Title: A Handbook of Statistical Analyses Using R (2nd Edition)
Description: Functions, data sets, analyses and examples from the second edition of the book `A Handbook of Statistical Analyses Using R' (Brian S. Everitt and Torsten Hothorn, Chapman & Hall/CRC, 2008). The first chapter of the book, which is entitled `An Introduction to R', is completely included in this package, for all other chapters, a vignette containing all data analyses is available. In addition, the package contains Sweave code for producing slides for selected chapters (see HSAUR2/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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Package CFC updated to version 1.1.0 with previous version 1.0.1 dated 2015-12-21

Title: Cause-Specific Framework for Competing-Risk Analysis
Description: Numerical integration of cause-specific survival curves to arrive at cause-specific cumulative incidence functions, with three usage modes: 1) Convenient API for parametric survival regression followed by competing-risk analysis, 2) API for CFC, accepting user-specified survival functions in R, and 3) Same as 2, but accepting survival functions in C++.
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>

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Package BDgraph updated to version 2.39 with previous version 2.38 dated 2017-06-20

Title: Bayesian Structure Learning in Graphical Models using Birth-Death MCMC
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889> and Mohammadi et al. (2017) <doi:10.1111/rssc.12171>. To speed up the computations, the BDMCMC sampling algorithms are implemented in parallel using OpenMP in C++.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>

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Package osmdata updated to version 0.0.4 with previous version 0.0.3 dated 2017-06-13

Title: Import 'OpenStreetMap' Data as Simple Features or Spatial Objects
Description: Download and import of 'OpenStreetMap' ('OSM') data as 'sf' or 'sp' objects. 'OSM' data are extracted from the 'Overpass' web server and processed with very fast 'C++' routines for return to 'R'.
Author: Mark Padgham [aut, cre], Bob Rudis [aut], Robin Lovelace [aut], Maëlle Salmon [aut], Andrew Smith [ctb], Marcin Kalicinski [ctb, cph] (Author of included RapidXML code), Finkelstein Noam [ctb, cph] (Author of included stub.R code), Bartnik Lukasz [ctb, cph] (Author of included stub.R code)
Maintainer: Mark Padgham <mark.padgham@email.com>

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Package SFS updated to version 0.1.1 with previous version 0.1 dated 2017-06-20

Title: Similarity-First Search Seriation Algorithm
Description: An implementation of the Similarity-First Search algorithm (SFS), a combinatorial algorithm which can be used to solve the seriation problem and to recognize some structured weighted graphs. The SFS algorithm represents a generalization to weighted graphs of the graph search algorithm Lexicographic Breadth-First Search (Lex-BFS), a variant of Breadth-First Search. The SFS algorithm reduces to Lex-BFS when applied to binary matrices (or, equivalently, unweighted graphs). Hence this library can be also considered for Lex-BFS applications such as recognition of graph classes like chordal or unit interval graphs. In fact, the SFS seriation algorithm implemented in this package is a multisweep algorithm, which consists in repeating a finite number of SFS iterations (at most \eqn{n} sweeps for a matrix of size \eqn{n}). If the data matrix has a Robinsonian structure, then the ranking returned by the multistep SFS algorithm is a Robinson ordering of the input matrix. Otherwise the algorithm can be used as a heuristic to return a ranking partially satisfying the Robinson property.
Author: Matteo Seminaroti [aut, cph], Utz-Uwe Haus [aut, cre, cph]
Maintainer: Utz-Uwe Haus <uhaus@cray.com>

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Package LeArEst updated to version 0.1.5 with previous version 0.1.4 dated 2017-03-25

Title: Border and Area Estimation of Data Measured with Additive Error
Description: Provides methods for estimating borders of uniform distribution on the interval (one-dimensional) and on the elliptical domain (two-dimensional) under measurement errors. For one-dimensional case, it also estimates the length of underlying uniform domain and tests the hypothesized length against two-sided or one-sided alternatives. For two-dimensional case, it estimates the area of underlying uniform domain. It works with numerical inputs as well as with pictures in JPG format.
Author: Mirta Bensic [aut], Safet Hamedovic [aut], Kristian Sabo [aut], Petar Taler [aut, cre]
Maintainer: Petar Taler <petar@mathos.hr>

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Package HSAUR3 updated to version 1.0-7 with previous version 1.0-6 dated 2017-02-28

Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Description: Functions, data sets, analyses and examples from the third edition of the book `A Handbook of Statistical Analyses Using R' (Torsten Hothorn and Brian S. Everitt, Chapman & Hall/CRC, 2014). The first chapter of the book, which is entitled `An Introduction to R', is completely included in this package, for all other chapters, a vignette containing all data analyses is available. In addition, Sweave source code for slides of selected chapters is included in this package (see HSAUR3/inst/slides).
Author: Torsten Hothorn and Brian S. Everitt
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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Package HSAUR updated to version 1.3-8 with previous version 1.3-7 dated 2015-07-28

Title: A Handbook of Statistical Analyses Using R (1st Edition)
Description: Functions, data sets, analyses and examples from the book `A Handbook of Statistical Analyses Using R' (Brian S. Everitt and Torsten Hothorn, Chapman & Hall/CRC, 2006). The first chapter of the book, which is entitled `An Introduction to R', is completely included in this package, for all other chapters, a vignette containing all data analyses is available.
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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Package pracma updated to version 2.0.7 with previous version 2.0.4 dated 2017-04-03

Title: Practical Numerical Math Functions
Description: Provides a large number of functions from numerical analysis and linear algebra, numerical optimization, differential equations, time series, plus some well-known special mathematical functions. Uses 'MATLAB' function names where appropriate to simplify porting.
Author: Hans Werner Borchers [aut, cre]
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>

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Package sidrar updated to version 0.2.0 with previous version 0.1.1 dated 2017-04-23

Title: An Interface to IBGE's SIDRA API
Description: Allows the user to connect with IBGE's (Instituto Brasileiro de Geografia e Estatistica, see <http://www.ibge.gov.br/> for more information) SIDRA API in a flexible way. SIDRA is the acronym to "Sistema IBGE de Recuperacao Automatica" and is the system where IBGE turns available aggregate data from their researches.
Author: Renato Prado Siqueira [aut, cre]
Maintainer: Renato Prado Siqueira <rpradosiqueira@gmail.com>

Diff between sidrar versions 0.1.1 dated 2017-04-23 and 0.2.0 dated 2017-06-21

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Package lingtypology updated to version 1.0.5 with previous version 1.0.4 dated 2017-05-13

Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <http://glottolog.org> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <http://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://ropensci.github.io/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching.
Author: George Moroz
Maintainer: George Moroz <agricolamz@gmail.com>

Diff between lingtypology versions 1.0.4 dated 2017-05-13 and 1.0.5 dated 2017-06-21

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Tue, 20 Jun 2017

Package taxizedb updated to version 0.1.4 with previous version 0.1.0 dated 2017-05-03

Title: Tools for Working with 'Taxonomic' Databases
Description: Tools for working with 'taxonomic' databases, including utilities for downloading databases, loading them into various 'SQL' databases, cleaning up files, and providing a 'SQL' connection that can be used to do 'SQL' queries directly or used in 'dplyr'.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>

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Package rkafkajars updated to version 1.1 with previous version 1.0 dated 2015-04-10

Title: External Jars Required for Package 'rkafka'
Description: The 'rkafkajars' package collects all the external jars required for the 'rkafka' package.
Author: Shruti Gupta [aut,cre], Coda Hale and Yammer Inc.[ctb,cph],Sun Microsystems Inc.[ctb,cph],Marc Prud'hommeaux[ctb,cph],Paul Holser[ctb],Junit[ctb,cph],The Apache Software Foundation [ctb,cph],Stefan Groschupf[ctb,cph],Taro L.Saito[ctb],EPFL Typesafe Inc.[ctb,cph],QOS.ch[ctb,cph]
Maintainer: Shruti Gupta <shrutigupta34@gmail.com>

Diff between rkafkajars versions 1.0 dated 2015-04-10 and 1.1 dated 2017-06-20

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Package RcppCCTZ updated to version 0.2.3 with previous version 0.2.2 dated 2017-04-21

Title: 'Rcpp' Bindings for the 'CCTZ' Library
Description: 'Rcpp' Access to the 'CCTZ' timezone library is provided. 'CCTZ' is a C++ library for translating between absolute and civil times using the rules of a time zone. The 'CCTZ' source code, released under the Apache 2.0 License, is included in this package. See <https://github.com/google/cctz> for more details.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppCCTZ versions 0.2.2 dated 2017-04-21 and 0.2.3 dated 2017-06-20

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Package qdapTools updated to version 1.3.3 with previous version 1.3.1 dated 2015-09-25

Title: Tools for the 'qdap' Package
Description: A collection of tools associated with the 'qdap' package that may be useful outside of the context of text analysis.
Author: Bryan Goodrich [ctb], Dason Kurkiewicz [ctb], Kirill Muller [ctb], Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>

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Package BNSL updated to version 0.1.2 with previous version 0.1.1 dated 2017-06-20

Title: Bayesian Network Structure Learning
Description: From a given data frame, this package learns its Bayesian network structure based on a selected score.
Author: Joe Suzuki and Jun Kawahara
Maintainer: Joe Suzuki <j-suzuki@sigmath.es.osaka-u.ac.jp>

Diff between BNSL versions 0.1.1 dated 2017-06-20 and 0.1.2 dated 2017-06-20

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Package BDgraph updated to version 2.38 with previous version 2.37 dated 2017-05-24

Title: Bayesian Structure Learning in Graphical Models using Birth-Death MCMC
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889> and Mohammadi et al. (2017) <doi:10.1111/rssc.12171>. To speed up the computations, the BDMCMC sampling algorithms are implemented in parallel using OpenMP in C++.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>

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Package congressbr updated to version 0.1.1 with previous version 0.1.0 dated 2017-04-30

Title: Downloads, Unpacks and Tidies Legislative Data from the Brazilian Federal Senate and Chamber of Deputies
Description: Downloads and tidies data from the Brazilian Federal Senate and Chamber of Deputies Application Programming Interfaces available at <http://legis.senado.gov.br/dadosabertos/> and <http://www.camara.leg.br/SitCamaraWS/> respectively.
Author: Robert Myles McDonnell, Guilherme Jardim Duarte and Danilo Freire
Maintainer: Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>

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Package nonmem2R updated to version 0.1.7 with previous version 0.1.5 dated 2016-10-25

Title: Loading NONMEM Output Files and Simulate with Parameter Uncertainty
Description: Loading NONMEM (NONlinear Mixed-Effect Modeling, <http://www.iconplc.com/innovation/solutions/nonmem/> ) output files and simulate with parameter uncertainty.
Author: Magnus Astrand
Maintainer: Magnus Astrand <magnus.astrand@astrazeneca.com>

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Package eulerr updated to version 2.0.0 with previous version 1.1.0 dated 2017-02-05

Title: Area-Proportional Euler Diagrams
Description: If possible, generates exactly area-proportional Euler diagrams, or otherwise approximately proportional diagrams using numerical optimization. A Euler diagram is a generalization of a Venn diagram, relaxing the criterion that all interactions need to be represented.
Author: Johan Larsson [aut, cre], A. Jonathan R. Godfrey [ctb]
Maintainer: Johan Larsson <johanlarsson@outlook.com>

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Package mlt updated to version 0.2-0 with previous version 0.1-3 dated 2017-04-05

Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation models via the most likely transformation approach described in Hothorn et al. (2016) <arXiv:1508.06749>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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Package distillery updated to version 1.0-4 with previous version 1.0-2 dated 2015-07-24

Title: Method Functions for Confidence Intervals and to Distill Information from an Object
Description: Some very simple method functions for confidence interval calculation, bootstrap resampling, and to distill pertinent information from a potentially complex object; primarily used in common with packages extRemes and SpatialVx.
Author: Eric Gilleland
Maintainer: Eric Gilleland <ericg@ucar.edu>

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Package arfima updated to version 1.4-0 with previous version 1.3-4 dated 2015-12-31

Title: Fractional ARIMA (and Other Long Memory) Time Series Modeling
Description: Simulates, fits, and predicts long-memory and anti-persistent time series, possibly mixed with ARMA, regression, transfer-function components. Exact methods (MLE, forecasting, simulation) are used.
Author: JQ (Justin) Veenstra [aut, cre], A.I. McLeod [aut]
Maintainer: JQ (Justin) Veenstra <jqveenstra@gmail.com>

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 61 files changed, 7061 insertions(+), 7110 deletions(-)

More information about arfima at CRAN
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Package scape updated to version 2.3-1 with previous version 2.2-0 dated 2014-03-12

Title: Statistical Catch-at-Age Plotting Environment
Description: Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>

Diff between scape versions 2.2-0 dated 2014-03-12 and 2.3-1 dated 2017-06-20

 DESCRIPTION                |   18 -
 MD5                        |  132 ++++---
 NAMESPACE                  |    4 
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 vignettes/gallery.Rnw      |  380 +++++++++++-----------
 vignettes/mymodel.Rnw      |  288 ++++++++---------
 68 files changed, 5149 insertions(+), 5008 deletions(-)

More information about scape at CRAN
Permanent link

Package gmt updated to version 2.0-0 with previous version 1.2-0 dated 2014-03-12

Title: Interface Between GMT Map-Making Software and R
Description: Interface between the GMT map-making software and R, enabling the user to manipulate geographic data within R and call GMT commands to draw and annotate maps in postscript format. The gmt package is about interactive data analysis, rapidly visualizing subsets and summaries of geographic data, while performing statistical analysis in the R console.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>

Diff between gmt versions 1.2-0 dated 2014-03-12 and 2.0-0 dated 2017-06-20

 DESCRIPTION               |   27 ++--
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 R/r2gmt.R                 |   44 +++---
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 inst/example/tmp/text.gmt |   14 +-
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 39 files changed, 1216 insertions(+), 1304 deletions(-)

More information about gmt at CRAN
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Package learnr updated to version 0.9 with previous version 0.8 dated 2017-05-08

Title: Interactive Tutorials for R
Description: Create interactive tutorials using R Markdown. Use a combination of narrative, figures, videos, exercises, and quizzes to create self-paced tutorials for learning about R and R packages.
Author: JJ Allaire [aut, cre], RStudio, Inc. [cph], Ajax.org B.V. [ctb, cph] (Ace library), Zeno Rocha [ctb, cph] (clipboard.js library), Nick Payne [ctb, cph] (Bootbox library), Julie Cameron [ctb] (SlickQuiz library), Quicken Loans [cph] (SlickQuiz library), Mozilla [ctb, cph] (localforage library)
Maintainer: JJ Allaire <jj@rstudio.com>

Diff between learnr versions 0.8 dated 2017-05-08 and 0.9 dated 2017-06-20

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 NAMESPACE                                 |    4 
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 R/options.R                               |    5 
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 inst/lib/tutorial/tutorial-diagnostics.js |   17 ++
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 man/tutorial_options.Rd                   |    5 
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More information about learnr at CRAN
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Package StatCharrms updated to version 0.90.4 with previous version 0.90.3 dated 2017-05-16

Title: Statistical Analysis of Chemistry, Histopathology, and Reproduction Endpoints Including Repeated Measures and Multi-Generation Studies
Description: A front end for the statistical analyses involved in the tier II endocrine disruptor screening program. The analyses available to this package are: Rao-Scott adjusted Cochran-Armitage test for trend By Slices (RSCABS), a Standard Cochran-Armitage test for trend By Slices (SCABS), mixed effects Cox proportional model, Jonckheere-Terpstra step down trend test Dunn test, one way ANOVA, weighted ANOVA, mixed effects ANOVA, repeated measures ANOVA, and Dunnett test.
Author: Joe Swintek [aut, cre], Kevin Flynn [ctb], Jon Haselman [ctb]
Maintainer: Joe Swintek <swintek.joe@epa.gov>

Diff between StatCharrms versions 0.90.3 dated 2017-05-16 and 0.90.4 dated 2017-06-20

 DESCRIPTION              |   10 +++++-----
 MD5                      |    8 ++++----
 R/Run.StatCharrms.R      |   18 +++++++++---------
 inst/CITATION            |    6 +++---
 inst/doc/StatCharrms.pdf |binary
 5 files changed, 21 insertions(+), 21 deletions(-)

More information about StatCharrms at CRAN
Permanent link

Package RxnSim updated to version 1.0.2 with previous version 1.0.1 dated 2015-04-08

Title: Functions to Compute Chemical Reaction Similarity
Description: Methods to compute chemical similarity between two or more reactions and molecules. Allows masking of chemical substructures for weighted similarity computations. Uses packages 'rCDK' and 'fingerprint' for cheminformatics functionality.
Author: Varun Giri [aut, cre]
Maintainer: Varun Giri <varungiri@gmail.com>

Diff between RxnSim versions 1.0.1 dated 2015-04-08 and 1.0.2 dated 2017-06-20

 CHANGELOG      |   50 +++++----
 DESCRIPTION    |    8 -
 MD5            |    8 -
 NEWS           |    1 
 R/RxnSimMask.R |  302 ++++++++++++++++++++++++++++-----------------------------
 5 files changed, 188 insertions(+), 181 deletions(-)

More information about RxnSim at CRAN
Permanent link


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