Title: Extracts Risk Neutral Densities of Prices, Money Market Rates
and Government Bond Yields from Interest Rates Futures Options
Prices
Description: Provides with parametric Risk Neutral Densities (RNDs) and cumulative densities of futures prices on fixed-income products, relying on options on Short Term Interest Rate futures or options on government bond futures. It models the futures price at options' maturity as a mixture of lognormal densities. Leveraging on this, the package provides with the RNDs and cumulative densities of the money market rate or the government bond yield inferred from the futures price, using the RND of the futures price. The package also extracts from options prices on bond futures in one go the RND of the cheapest-to-deliver (ctd) bond repo rate from options' to futures' maturity and the RND of the ctd bond yield at options' maturity. The package also provides with the probability attached to each bond in the delivery basket of a government bond futures to be the cheapest at options' maturity from an examination of either the implied repo rate or the net basis of bonds in the delivery basket, as well as [...truncated...]
Author: William Arrata [aut, cre]
Maintainer: William Arrata <william.arrata@gmail.com>
Diff between yrnd versions 0.1.7 dated 2026-09-30 and 0.1.8 dated 2026-11-01
DESCRIPTION | 8 MD5 | 48 - NAMESPACE | 1 R/bond_fut_irr_ytm.R | 1059 +++++++++++++++++++++--------------------- R/bond_future_charac_bbg.R | 9 R/bond_future_price.R | 1 R/bond_yield_spread.R | 2 R/ctd_bond_yield.R | 1 R/deliv_bonds_charac_bbg.R | 114 ++-- R/globals.R | 2 R/option_prices_bbg.R | 23 R/proba_ctd.R | 46 - R/proba_ctd_irr.R | 735 ++++++++++++++--------------- R/proba_ctd_opt.R | 315 ++++++++---- R/sc_repo_spread.R |only R/stir_future_charac_bbg.R | 1 inst/doc/yrnd-functions.R | 3 inst/doc/yrnd-functions.Rmd | 10 inst/doc/yrnd-functions.html | 57 +- man/bond_fut_irr_ytm.Rd | 6 man/bond_future_charac_bbg.Rd | 2 man/bond_yield_spread.Rd | 2 man/proba_ctd_irr.Rd | 6 man/proba_ctd_opt.Rd | 14 man/sc_repo_spread.Rd |only vignettes/yrnd-functions.Rmd | 10 26 files changed, 1316 insertions(+), 1159 deletions(-)
Title: BioAcoustic eveNT classifiER
Description: Create a hierarchical acoustic event species classifier out of
multiple call type detectors as described in
Rankin et al (2017) <doi:10.1111/mms.12381>.
Author: Eric Archer [aut, cre],
Shannon Rankin [aut]
Maintainer: Eric Archer <eric.ivan.archer@gmail.com>
Diff between banter versions 0.9.8 dated 2025-06-11 and 0.9.81 dated 2026-11-01
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/summary.R | 3 ++- README.md | 6 +++++- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: An R Interface to the 'ROPTLIB' Library for Riemannian Manifold
Optimization
Description: An R interface to version 0.3 of the 'ROPTLIB' optimization library
(see <https://www.math.fsu.edu/~whuang2/> for more information). Optimize
real-valued functions over manifolds such as Stiefel, Grassmann, and
symmetric positive definite matrices. For details see Martin et al. (2020)
<doi:10.18637/jss.v093.i01>. Note that the optional 'ldr' package used in
some of this package's examples can be obtained from either the article
<doi:10.18637/jss.v061.i03> or from the 'ldr' package
<https://cran.r-project.org/package=ldr>.
Author: Kofi P. Adragni [aut, cph],
Sean R. Martin [aut, cre, cph],
Andrew M. Raim [aut, cph],
Wen Huang [aut, cph]
Maintainer: Sean R. Martin <sean.martin@jhuapl.edu>
Diff between ManifoldOptim versions 1.0.2 dated 2026-07-12 and 1.0.3 dated 2026-11-01
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- src/Manifolds/Euclidean/Euclidean.cpp | 2 +- src/Manifolds/Grassmann/Grassmann.cpp | 2 +- src/Manifolds/L2Sphere/L2Sphere.cpp | 2 +- src/Manifolds/PreShapeCurves/PreShapeCurves.cpp | 2 +- src/Manifolds/SPDManifold.cpp | 2 +- src/Manifolds/Stiefel/Stiefel.cpp | 2 +- 8 files changed, 16 insertions(+), 16 deletions(-)
Title: (Un)Conditional Forecast Dominance
Description: A unified toolkit for out-of-sample forecast dominance testing.
Covers unconditional and conditional equal and superior predictive
ability, encompassing, and nested-model comparison. Implements the
Diebold-Mariano test with the Harvey, Leybourne, and Newbold (1997)
<doi:10.1016/S0169-2070(96)00719-4> small-sample correction; the
Clark-West mean squared forecast error (MSFE) adjusted statistic
(Clark and West, 2007)
<doi:10.1016/j.jeconom.2006.05.023>; the ENC-NEW encompassing test of
Clark and McCracken (2001) <doi:10.1016/S0304-4076(01)00071-9>; the
Giacomini-White conditional equal predictive ability test (Giacomini
and White, 2006) <doi:10.1111/j.1468-0262.2006.00718.x>; Hansen's
superior predictive ability (SPA) test (Hansen, 2005)
<doi:10.1198/073500105000000063>; the conditional superior predictive
ability test of Li, Liao, and Quaedvlieg (2022)
<doi:10.1093/restud/rdab039>; and the uniform and average multi-horizon
SPA tests of Quaedvlieg (202 [...truncated...]
Author: Gabriel Cabrera [aut, cre]
Maintainer: Gabriel Cabrera <gabriel.cabrera.guz@gmail.com>
Diff between forecastdom versions 0.1.0 dated 2026-07-24 and 0.1.1 dated 2026-11-01
forecastdom-0.1.0/forecastdom/R/aspa_mh_test.R |only forecastdom-0.1.0/forecastdom/R/cspa_test.R |only forecastdom-0.1.0/forecastdom/R/cspa_test_plot.R |only forecastdom-0.1.0/forecastdom/R/cw_test.R |only forecastdom-0.1.0/forecastdom/R/dm_test.R |only forecastdom-0.1.0/forecastdom/R/do_prewhiten.R |only forecastdom-0.1.0/forecastdom/R/do_sim.R |only forecastdom-0.1.0/forecastdom/R/enc_new.R |only forecastdom-0.1.0/forecastdom/R/get_legendre.R |only forecastdom-0.1.0/forecastdom/R/gw_test.R |only forecastdom-0.1.0/forecastdom/R/ivx_wald.R |only forecastdom-0.1.0/forecastdom/R/llq2022_jnj-data.R |only forecastdom-0.1.0/forecastdom/R/llq2022_uv_cspa-data.R |only forecastdom-0.1.0/forecastdom/R/mh_helpers.R |only forecastdom-0.1.0/forecastdom/R/mse_f_test.R |only forecastdom-0.1.0/forecastdom/R/qll_hat.R |only forecastdom-0.1.0/forecastdom/R/spa_test.R |only forecastdom-0.1.0/forecastdom/R/uspa_mh_test.R |only forecastdom-0.1.1/forecastdom/DESCRIPTION | 13 - forecastdom-0.1.1/forecastdom/MD5 | 102 +++++------ forecastdom-0.1.1/forecastdom/NEWS.md | 18 + forecastdom-0.1.1/forecastdom/R/RcppExports.R | 10 + forecastdom-0.1.1/forecastdom/R/aspa-mh-test.R |only forecastdom-0.1.1/forecastdom/R/covnw.R | 2 forecastdom-0.1.1/forecastdom/R/cspa-test-plot.R |only forecastdom-0.1.1/forecastdom/R/cspa-test.R |only forecastdom-0.1.1/forecastdom/R/cw-test.R |only forecastdom-0.1.1/forecastdom/R/dm-test.R |only forecastdom-0.1.1/forecastdom/R/do-prewhiten.R |only forecastdom-0.1.1/forecastdom/R/do-sim.R |only forecastdom-0.1.1/forecastdom/R/enc-new.R |only forecastdom-0.1.1/forecastdom/R/get-legendre.R |only forecastdom-0.1.1/forecastdom/R/gw-test.R |only forecastdom-0.1.1/forecastdom/R/ivx-wald.R |only forecastdom-0.1.1/forecastdom/R/llq2022-jnj-data.R |only forecastdom-0.1.1/forecastdom/R/llq2022-uv-cspa-data.R |only forecastdom-0.1.1/forecastdom/R/mh-helpers.R |only forecastdom-0.1.1/forecastdom/R/mse-f-test.R |only forecastdom-0.1.1/forecastdom/R/qll-hat.R |only forecastdom-0.1.1/forecastdom/R/spa-test.R |only forecastdom-0.1.1/forecastdom/R/uspa-mh-test.R |only forecastdom-0.1.1/forecastdom/README.md | 9 forecastdom-0.1.1/forecastdom/inst/WORDLIST | 2 forecastdom-0.1.1/forecastdom/inst/doc/forecastdom.html | 6 forecastdom-0.1.1/forecastdom/inst/doc/hl2005-spa-garch.Rmd | 9 forecastdom-0.1.1/forecastdom/inst/doc/hl2005-spa-garch.html | 64 +++--- forecastdom-0.1.1/forecastdom/inst/doc/llq2022-cspa-rv.html | 10 - forecastdom-0.1.1/forecastdom/man/aspa_mh_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/cspa_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/cspa_test_plot.Rd | 2 forecastdom-0.1.1/forecastdom/man/cw_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/dm_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/do_prewhiten.Rd | 2 forecastdom-0.1.1/forecastdom/man/do_sim.Rd | 2 forecastdom-0.1.1/forecastdom/man/enc_new.Rd | 2 forecastdom-0.1.1/forecastdom/man/forecastdom-package.Rd | 4 forecastdom-0.1.1/forecastdom/man/get_legendre.Rd | 2 forecastdom-0.1.1/forecastdom/man/gw_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/ivx_wald.Rd | 2 forecastdom-0.1.1/forecastdom/man/llq2022_jnj.Rd | 2 forecastdom-0.1.1/forecastdom/man/llq2022_uv_cspa.Rd | 2 forecastdom-0.1.1/forecastdom/man/mse_f_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/print.cspa_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/qll_hat.Rd | 2 forecastdom-0.1.1/forecastdom/man/spa_test.Rd | 18 + forecastdom-0.1.1/forecastdom/man/summary.cspa_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/uspa_mh_test.Rd | 2 forecastdom-0.1.1/forecastdom/src/cspa_cpp.cpp | 15 - forecastdom-0.1.1/forecastdom/tests/testthat/test-cspa.R |only forecastdom-0.1.1/forecastdom/tests/testthat/test-spa_test.R |only forecastdom-0.1.1/forecastdom/vignettes/hl2005-spa-garch.Rmd | 9 71 files changed, 186 insertions(+), 141 deletions(-)
Title: Access International Monetary Fund Data via the 'SDMX' 3.0 API
Description: Download macroeconomic and financial statistics from the
International Monetary Fund data portal (<https://data.imf.org>), served
through an 'SDMX' 3.0 REST API. Provides a tidy interface to the Fund's
flagship databases, beginning with the World Economic Outlook, and reads
the compact 'SDMX-CSV' representation of each query for fast,
dependency-light parsing.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between readimf versions 0.1.0 dated 2026-06-15 and 0.1.1 dated 2026-11-01
DESCRIPTION | 8 ++--- MD5 | 50 ++++++++++++++++++------------------- NEWS.md | 17 ++++++++++++ R/databases.R | 26 +++++++++++++------ R/ifs.R | 6 ++-- R/imf_weo.R | 4 ++ R/request.R | 19 ++++++++++++-- R/structure.R | 28 ++++++++++++++------ README.md | 54 +++++++++++++++++++++------------------- inst/CITATION | 2 - man/imf_codelist.Rd | 4 ++ man/imf_cofer.Rd | 6 ++-- man/imf_commodity.Rd | 6 ++-- man/imf_countries.Rd | 4 ++ man/imf_cpi.Rd | 4 ++ man/imf_data.Rd | 4 ++ man/imf_dataflows.Rd | 6 ++-- man/imf_dimensions.Rd | 4 ++ man/imf_dots.Rd | 6 ++-- man/imf_gfs.Rd | 4 ++ man/imf_ifs.Rd | 6 ++-- man/imf_search.Rd | 6 ++-- man/imf_weo.Rd | 4 ++ man/readimf-package.Rd | 5 +++ tests/testthat/test-imf_weo.R | 9 ++++++ tests/testthat/test-internals.R | 8 +++++ 26 files changed, 205 insertions(+), 95 deletions(-)
Title: Download Data from the 'Office for National Statistics'
Description: Provides functions to download and tidy statistical data
published by the 'Office for National Statistics'
<https://www.ons.gov.uk>. Covers GDP, inflation (CPI, CPIH, RPI),
unemployment, employment, wages, trade, retail sales, house prices,
productivity, population, and public sector finances. Most series are
fetched from the 'ONS' website using its CSV time series endpoint.
House price data is sourced from 'HM Land Registry'
<https://www.gov.uk/government/organisations/land-registry>.
Data is cached locally between sessions.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between ons versions 0.1.4 dated 2026-09-09 and 0.1.5 dated 2026-11-01
DESCRIPTION | 8 +- MD5 | 49 ++++++++-------- NEWS.md | 23 +++++++ R/ons_gdp.R | 13 ++-- R/ons_wages.R | 2 R/utils.R | 60 +++++++++++++++++--- README.md | 118 ++++++++++++++++++++-------------------- man/clear_cache.Rd | 6 +- man/ons-package.Rd | 5 + man/ons_cpi.Rd | 10 +-- man/ons_employment.Rd | 8 +- man/ons_gdp.Rd | 19 +++--- man/ons_get.Rd | 6 +- man/ons_house_prices.Rd | 6 +- man/ons_inactivity.Rd | 8 +- man/ons_monthly_gdp.Rd | 10 +-- man/ons_population.Rd | 10 +-- man/ons_productivity.Rd | 10 +-- man/ons_retail_sales.Rd | 6 +- man/ons_search.Rd | 6 +- man/ons_trade.Rd | 6 +- man/ons_unemployment.Rd | 8 +- man/ons_wages.Rd | 8 +- tests/testthat/test-ons_gdp.R | 9 +++ tests/testthat/test-ons_wages.R | 7 ++ tests/testthat/test-utils.R |only 26 files changed, 258 insertions(+), 163 deletions(-)
Title: Inflation Decomposition, Core Measures, and Trend Estimation
Description: Tools for analysing inflation dynamics. Computes weighted
contributions of price index components, core inflation measures
(trimmed mean, weighted median, exclusion-based) following Bryan and
Cecchetti (1994), inflation
persistence via sum-of-AR-coefficients, diffusion indices, Phillips
curve estimation, breakeven inflation, and trend inflation using the
Beveridge-Nelson decomposition and Hodrick-Prescott filter. All
functions are pure computation and work with price data from any
source.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between inflationkit versions 0.1.0 dated 2026-03-26 and 0.1.1 dated 2026-11-01
inflationkit-0.1.0/inflationkit/build |only inflationkit-0.1.1/inflationkit/DESCRIPTION | 13 - inflationkit-0.1.1/inflationkit/MD5 | 16 - inflationkit-0.1.1/inflationkit/NAMESPACE | 106 +++++----- inflationkit-0.1.1/inflationkit/NEWS.md | 11 + inflationkit-0.1.1/inflationkit/R/sample_data.R | 8 inflationkit-0.1.1/inflationkit/R/utils.R | 25 ++ inflationkit-0.1.1/inflationkit/man/inflationkit-package.Rd | 8 inflationkit-0.1.1/inflationkit/tests/testthat/Rplots.pdf |only inflationkit-0.1.1/inflationkit/tests/testthat/test-sample_data.R | 19 + 10 files changed, 136 insertions(+), 70 deletions(-)
Title: Inflation Adjustment for Historical Currency Values
Description: Convert historical monetary values into their present-day equivalents
using bundled CPI (Consumer Price Index) and GDP deflator data sourced from the
World Bank Development Indicators. Supports British pounds (GBP), Australian
dollars (AUD), US dollars (USD), Euro (EUR), Canadian dollars (CAD), Japanese
yen (JPY), Chinese yuan (CNY), Swiss francs (CHF), New Zealand dollars (NZD),
Indian rupees (INR), South Korean won (KRW), Brazilian reais (BRL), and
Norwegian krone (NOK). Currency codes and country names are both accepted as
input.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between inflateR versions 0.2.0 dated 2026-09-09 and 0.2.1 dated 2026-11-01
DESCRIPTION | 8 ++++---- MD5 | 25 +++++++++++++------------ NEWS.md | 21 +++++++++++++++++++++ R/data.R | 15 ++++++++++++--- README.md | 36 ++++++++++++++++++------------------ data/nok_cpi.rda |binary data/usd_cpi.rda |binary man/adjust_inflation.Rd | 4 ++-- man/adjust_real.Rd | 4 ++-- man/historical_real.Rd | 4 ++-- man/historical_value.Rd | 4 ++-- man/inflateR-package.Rd | 5 +++++ man/usd_cpi.Rd | 16 +++++++++++++--- tests/testthat/test-data.R |only 14 files changed, 94 insertions(+), 48 deletions(-)
Title: Inequality Measurement, Decomposition, and Poverty Analysis
Description: Tools for measuring income and wealth inequality. Computes the
Gini coefficient with bootstrap or asymptotic confidence intervals
following Davidson (2009) <doi:10.1016/j.jeconom.2008.11.004>, the
extended S-Gini family, Theil T and L indices (generalised entropy
family), the Atkinson index, the Kolm absolute inequality index, Palma
ratio, Hoover index, percentile ratios, and Lorenz curves. Supports
between-within group decomposition following Bourguignon (1979)
<doi:10.2307/1914138>, income share tabulation, concentration indices
for health inequality with Erreygers (2009) correction, Kakwani tax
progressivity and Reynolds-Smolensky redistribution indices,
Foster-Greer-Thorbecke poverty measures including the Sen index, growth
incidence curves following Ravallion and Chen (2003)
<doi:10.1016/S0165-1765(02)00205-7>, and Wolfson polarisation. All
functions accept optional survey weights and work with data from any
source.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between inequality versions 0.2.0 dated 2026-09-08 and 0.2.1 dated 2026-11-01
DESCRIPTION | 8 +++--- MD5 | 16 ++++++------- NAMESPACE | 54 +++++++++++++++++++++++++--------------------- NEWS.md | 16 +++++++++++++ R/sample_data.R | 10 +++++++- R/utils.R | 26 ++++++++++++++++++++++ man/inequality-package.Rd | 5 ++++ man/iq_sample_data.Rd | 6 +++++ tests/testthat/Rplots.pdf |binary 9 files changed, 104 insertions(+), 37 deletions(-)
Title: Unified Climate Indices for Temperature, Precipitation, and
Drought
Description: Compute the standard suite of climate indices from daily
weather observations. Provides the canonical 'ETCCDI' 27 (Expert
Team on Climate Change Detection and Indices), the 'ET-SCI'
heatwave and cold-wave families plus the Excess Heat Factor of
Nairn and Fawcett (2013), and agroclimatic, drought, and
human-comfort families. Drought indices ('SPI', 'SPEI') accept a
choice of distribution (gamma or Pearson III for SPI; log-logistic
or generalised extreme value for SPEI). Reference
evapotranspiration is available via Hargreaves and the FAO-56
Penman-Monteith method (Allen et al. 1998). Percentile-based
indices support the Zhang (2005) in-base bootstrap. Daily inputs
are numeric vectors plus a 'Date' vector; outputs are tidy data
frames. Optional gridded support via 'terra' applies any index
over a 'SpatRaster' and reads 'netCDF' input. No external API
calls; pairs with data packages such as 'readnoaa'. References:
Alexander et al. (2006) <doi:10.1029/2005JD006290>; Zhang et al.
(201 [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between climatekit versions 0.2.2 dated 2026-09-09 and 0.2.3 dated 2026-11-01
DESCRIPTION | 8 +-- MD5 | 16 +++---- NAMESPACE | 6 +- NEWS.md | 16 +++++++ R/drought.R | 52 ++++++++++--------------- README.md | 68 +++++++++++++++++++-------------- man/climatekit-package.Rd | 5 ++ tests/testthat/test-drought.R | 15 +++++-- tests/testthat/test-v022-regressions.R | 34 ++++++++++++++++ 9 files changed, 143 insertions(+), 77 deletions(-)
Title: Access Carbon Market Data from Emissions Trading Systems and
Voluntary Registries
Description: Unified access to carbon market data from compliance
emissions trading systems ('EU ETS', 'UK ETS', 'RGGI', California
Cap-and-Trade) and voluntary carbon markets (Verra, Gold Standard,
American Carbon Registry, Climate Action Reserve, via the Berkeley
Voluntary Registry Offsets Database and the 'CarbonPlan' 'OffsetsDB'
API). Includes cross-market price data from the 'International
Carbon Action Partnership' ('ICAP') Allowance Price Explorer
<https://icapcarbonaction.com/en/ets-prices>, global carbon pricing
from the World Bank Carbon Pricing Dashboard
<https://carbonpricingdashboard.worldbank.org/>, and the historical
'RFF' World Carbon Pricing Database following Dolphin, Pollitt and
Newbery (2020) <doi:10.1038/s41597-022-01659-x>. Data is downloaded
from public sources on first use and cached locally.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between carbondata versions 0.2.0 dated 2026-09-09 and 0.2.1 dated 2026-11-01
DESCRIPTION | 8 ++--- MD5 | 56 +++++++++++++++++++-------------------- NAMESPACE | 14 ++++++--- NEWS.md | 11 +++++++ R/compliance.R | 53 ++++++++++++++++++++++++++++++++++-- man/carbondata-package.Rd | 5 +++ man/co2_cache_info.Rd | 4 +- man/co2_cad_trust.Rd | 6 ++-- man/co2_california_caps.Rd | 12 ++++---- man/co2_california_prices.Rd | 12 ++++---- man/co2_clear_cache.Rd | 4 +- man/co2_ecp_prices.Rd | 10 +++--- man/co2_euets_allocations.Rd | 12 ++++---- man/co2_euets_emissions.Rd | 12 ++++---- man/co2_euets_files.Rd | 12 ++++---- man/co2_euets_installations.Rd | 12 ++++---- man/co2_euets_price.Rd | 12 ++++---- man/co2_euets_surrendered.Rd | 12 ++++---- man/co2_icap_prices.Rd | 10 +++--- man/co2_icap_systems.Rd | 10 +++--- man/co2_offsets_db.Rd | 6 ++-- man/co2_rff_pricing.Rd | 10 +++--- man/co2_rggi_allowances.Rd | 18 +++++++----- man/co2_rggi_state_proceeds.Rd | 12 ++++---- man/co2_ukets.Rd | 12 ++++---- man/co2_ukets_allocations.Rd | 12 ++++---- man/co2_vrod.Rd | 6 ++-- man/co2_world_bank.Rd | 10 +++--- tests/testthat/test-compliance.R | 14 +++++++++ 29 files changed, 236 insertions(+), 151 deletions(-)
Title: Download and Tidy Australian Taxation Office Data
Description: Fetch Australian Taxation Office (ATO) Taxation
Statistics and related datasets via the data.gov.au Comprehensive
Knowledge Archive Network ('CKAN') API
<https://data.gov.au/data/api/3/>. Provides tidy access to
individual, company, superannuation, goods and services tax
(GST), fringe benefits tax (FBT), Voluntary Tax Transparency
Code (VTTC), Pay As You Go (PAYG) withholding, charity,
excise, and Corporate Tax Transparency data, plus Petroleum
Resource Rent Tax, Medicare Levy Surcharge, and fuel tax
credit aggregates.
Includes reproducibility helpers (snapshot pinning, SHA-256
cache integrity, session manifest, optional 'Zenodo' deposit),
classification crosswalks (ANZSIC 2006 to 2020, ANZSCO 2013
to 2021), panel harmonisation, reconciliation against Final
Budget Outcome totals, and real-terms and per-capita helpers
backed by bundled Australian Bureau of Statistics (ABS)
Consumer Price Index and Estimated Resident Population series.
Bridges to the 'taxstats' 2 per cent microdata [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between ato versions 0.1.1 dated 2026-09-08 and 0.1.2 dated 2026-11-01
DESCRIPTION | 8 - MD5 | 128 +++++++++++++++---------------- NEWS.md | 53 ++++++++++++ R/deflate.R | 2 R/reconcile.R | 14 +-- R/utils.R | 38 ++++++++- inst/doc/methodology.R | 4 inst/doc/methodology.Rmd | 23 ++--- inst/doc/methodology.html | 61 +++++++------- inst/extdata/abs_cpi_annual.csv | 62 +++++++-------- inst/extdata/abs_erp_annual.csv | 63 +++++++-------- inst/extdata/budget_reference_totals.csv | 76 +++++++++++++----- man/ato-package.Rd | 5 + man/ato_cache_info.Rd | 6 - man/ato_catalog.Rd | 28 +++--- man/ato_charities.Rd | 28 +++--- man/ato_cite.Rd | 28 +++--- man/ato_clear_cache.Rd | 6 - man/ato_compliance.Rd | 20 ++-- man/ato_crosswalk.Rd | 14 +-- man/ato_deflate.Rd | 14 +-- man/ato_deposit_zenodo.Rd | 12 +- man/ato_division293.Rd | 20 ++-- man/ato_download.Rd | 28 +++--- man/ato_excise.Rd | 28 +++--- man/ato_fbt.Rd | 28 +++--- man/ato_fuel_tax_credits.Rd | 20 ++-- man/ato_gst.Rd | 4 man/ato_harmonise.Rd | 14 +-- man/ato_help.Rd | 28 +++--- man/ato_individuals.Rd | 12 +- man/ato_individuals_age.Rd | 12 +- man/ato_individuals_occupation.Rd | 12 +- man/ato_individuals_postcode.Rd | 12 +- man/ato_individuals_sex.Rd | 12 +- man/ato_individuals_state.Rd | 12 +- man/ato_industry.Rd | 4 man/ato_international.Rd | 20 ++-- man/ato_irpd.Rd | 28 +++--- man/ato_manifest.Rd | 12 +- man/ato_manifest_clear.Rd | 12 +- man/ato_manifest_write.Rd | 12 +- man/ato_medicare_levy.Rd | 20 ++-- man/ato_meta.Rd | 6 - man/ato_payg.Rd | 28 +++--- man/ato_per_capita.Rd | 16 +-- man/ato_prrt.Rd | 20 ++-- man/ato_rba.Rd | 20 ++-- man/ato_rdti.Rd | 28 +++--- man/ato_reconcile.Rd | 24 +++-- man/ato_schema_map.Rd | 14 +-- man/ato_sha256.Rd | 12 +- man/ato_sme_benchmarks.Rd | 28 +++--- man/ato_snapshot.Rd | 12 +- man/ato_state_tax.Rd | 20 ++-- man/ato_tax_expenditures.Rd | 20 ++-- man/ato_tax_gaps.Rd | 28 +++--- man/ato_to_taxstats.Rd | 14 +-- man/ato_top_taxpayers.Rd | 28 +++--- man/ato_vttc.Rd | 28 +++--- man/ato_whm.Rd | 20 ++-- tests/testthat/test-deflate.R | 4 tests/testthat/test-reconcile.R | 17 +++- tests/testthat/test-utils.R | 18 ++++ vignettes/methodology.Rmd | 23 ++--- 65 files changed, 818 insertions(+), 653 deletions(-)
Title: Download and Tidy Data from the 'OECD'
Description: Provides clean, tidy access to key economic indicators published
by the 'Organisation for Economic Co-operation and Development' ('OECD'),
covering GDP, CPI inflation, unemployment, tax revenue, government deficit,
health expenditure, education expenditure, income inequality, labour
productivity, and current account balance across all
38 'OECD' member countries. Data is downloaded from the 'OECD Data Explorer'
API <https://data-explorer.oecd.org> on first use and cached locally for
subsequent calls. Returns tidy long-format data frames ready for analysis
and visualisation.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between readoecd versions 0.3.4 dated 2026-09-09 and 0.3.5 dated 2026-11-01
DESCRIPTION | 8 ++--- MD5 | 58 ++++++++++++++++++++-------------------- NEWS.md | 28 +++++++++++++++++++ R/cpi.R | 2 - R/deficit.R | 2 - R/education.R | 2 - R/gdp.R | 2 - R/health.R | 2 - R/inequality.R | 2 - R/labour.R | 2 - R/productivity.R | 2 - R/tax.R | 2 - R/trade.R | 2 - R/utils.R | 30 ++++++++++++++++++++ inst/CITATION | 2 - man/check_oecd_api.Rd | 6 ++-- man/clear_oecd_cache.Rd | 10 ++++-- man/get_oecd_cpi.Rd | 6 ++-- man/get_oecd_current_account.Rd | 4 +- man/get_oecd_deficit.Rd | 4 +- man/get_oecd_education.Rd | 6 ++-- man/get_oecd_gdp.Rd | 6 ++-- man/get_oecd_health.Rd | 6 ++-- man/get_oecd_inequality.Rd | 6 ++-- man/get_oecd_productivity.Rd | 4 +- man/get_oecd_tax.Rd | 4 +- man/get_oecd_unemployment.Rd | 6 ++-- man/list_oecd_countries.Rd | 6 ++-- man/readoecd-package.Rd | 5 +++ tests/testthat/test-utils.R | 27 ++++++++++++++++++ 30 files changed, 172 insertions(+), 80 deletions(-)
Title: Access 'NOAA' Climate and Weather Data
Description: Provides clean, tidy access to climate and weather data from the
'National Oceanic and Atmospheric Administration' ('NOAA') via the 'National
Centers for Environmental Information' ('NCEI') Data Service API
<https://www.ncei.noaa.gov/support/access-data-service-api-user-documentation>. Covers daily weather
observations, monthly and annual summaries, and 30-year climate normals from
over 100,000 stations across 180 countries. No API key is required.
Dedicated functions handle the most common datasets, while a generic fetcher
provides access to all 'NCEI' datasets. Station discovery functions help
users find stations by location or name. Data is downloaded on first use
and cached locally for subsequent calls. This package is not endorsed or
certified by 'NOAA'.
Author: Charles Coverdale [aut, cre, cph]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between readnoaa versions 0.2.1 dated 2026-09-09 and 0.2.2 dated 2026-11-01
DESCRIPTION | 8 +- MD5 | 40 ++++++------ NEWS.md | 26 +++++++ R/get.R | 10 ++- R/normals.R | 14 +++- README.md | 137 +++++++++++++++++++++++------------------- inst/CITATION | 2 man/cache_info.Rd | 10 +-- man/clear_cache.Rd | 10 +-- man/list_datasets.Rd | 10 +-- man/list_datatypes.Rd | 10 +-- man/noaa_annual.Rd | 8 +- man/noaa_coverage.Rd | 6 - man/noaa_daily.Rd | 8 +- man/noaa_get.Rd | 16 ++-- man/noaa_monthly.Rd | 8 +- man/noaa_nearby.Rd | 6 - man/noaa_normals.Rd | 18 +++-- man/noaa_stations.Rd | 6 - man/readnoaa-package.Rd | 5 + tests/testthat/test-normals.R | 27 ++++++++ 21 files changed, 240 insertions(+), 145 deletions(-)
Title: Access 'European Central Bank' Data
Description: Provides clean, tidy access to statistical data published by the
'European Central Bank' ('ECB') via the 'ECB Data Portal' API
<https://data.ecb.europa.eu>. Covers policy interest rates, 'EURIBOR',
euro exchange rates, harmonised consumer price inflation ('HICP'), euro area
yield curves, the euro short-term rate ('ESTR'), monetary aggregates (M1,
M2, M3), mortgage and lending rates, GDP, unemployment, and government
debt-to-GDP. Each dataset has a dedicated function that abstracts away the
underlying 'SDMX' key structure, so users do not need to know series codes.
A generic fetcher is also provided for direct access to any of the 'ECB'
100-plus dataflows. Data is downloaded on first use and cached locally for
subsequent calls.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between readecb versions 0.1.4 dated 2026-09-09 and 0.1.5 dated 2026-11-01
DESCRIPTION | 8 ++--- MD5 | 60 ++++++++++++++++++++--------------------- NEWS.md | 41 ++++++++++++++++++++++++++++ R/ecb_gdp.R | 2 - R/ecb_government_debt.R | 2 - R/ecb_hicp.R | 52 ++++++++++++++++++++++++++++------- R/ecb_unemployment.R | 2 - R/list_helpers.R | 10 ++++++ R/utils.R | 25 +++++++++++++++-- README.md | 31 ++++++++++----------- inst/CITATION | 2 - man/clear_cache.Rd | 8 ++--- man/ecb_estr.Rd | 6 ++-- man/ecb_euribor.Rd | 6 ++-- man/ecb_exchange_rate.Rd | 4 +- man/ecb_gdp.Rd | 6 ++-- man/ecb_get.Rd | 8 ++--- man/ecb_government_debt.Rd | 6 ++-- man/ecb_hicp.Rd | 16 ++++++++-- man/ecb_lending_rates.Rd | 6 ++-- man/ecb_money_supply.Rd | 6 ++-- man/ecb_mortgage_rates.Rd | 6 ++-- man/ecb_policy_rates.Rd | 6 ++-- man/ecb_unemployment.Rd | 6 ++-- man/ecb_yield_curve.Rd | 8 ++--- man/list_ecb_dataflows.Rd | 8 ++--- man/list_exchange_rates.Rd | 4 +- man/readecb-package.Rd | 5 +++ tests/testthat/test-cache.R | 22 +++++++++++++++ tests/testthat/test-ecb_gdp.R | 10 ++++++ tests/testthat/test-ecb_hicp.R | 33 ++++++++++++++++++++++ 31 files changed, 299 insertions(+), 116 deletions(-)
Title: Access 'Office for Budget Responsibility' Data
Description: Provides clean, tidy access to data published by the 'Office for
Budget Responsibility' ('OBR'), the UK's independent fiscal watchdog. Covers
the Public Finances Databank (outturn for PSNB, PSND, receipts, and
expenditure since 1946), the Historical Official Forecasts Database (every
'OBR' forecast since 2010), the Economic and Fiscal Outlook detailed forecast
tables (five-year projections from the latest Budget), the monthly
profiles for the public finances (the 'OBR' forecast apportioned across
the months of the fiscal year), and the Welfare Trends Report
(incapacity benefit spending and caseloads). All returned
objects carry provenance metadata recording the source URL, publication
vintage, retrieval time, and file fingerprint, so analyses can be audited
and reproduced. Data is downloaded from the 'OBR' on first use and cached
locally for subsequent calls. Data is sourced from the 'OBR' website
<https://obr.uk>.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between obr versions 0.6.2 dated 2026-08-24 and 0.6.3 dated 2026-11-01
DESCRIPTION | 10 - MD5 | 106 ++++++------ NAMESPACE | 6 NEWS.md | 93 +++++++++++ R/efo.R | 4 R/efo_catalogue.R | 10 - R/efo_dispatcher.R | 83 +++------ R/forecasts.R | 26 ++- R/policy_measures.R | 10 - R/public_finances.R | 32 +++ R/tbl.R | 13 + R/utils.R | 84 ++++++--- R/vintages.R | 4 R/welfare.R | 51 ++++-- README.md | 286 ++++++++++++++++++++++------------ inst/doc/vintages.html | 14 - man/clear_cache.Rd | 8 man/get_efo_economy.Rd | 12 - man/get_efo_fiscal.Rd | 12 - man/get_efo_table.Rd | 19 +- man/get_expenditure.Rd | 10 - man/get_forecast_revisions.Rd | 12 - man/get_forecasts.Rd | 12 - man/get_incapacity_caseloads.Rd | 6 man/get_incapacity_spending.Rd | 9 - man/get_monthly_profiles.Rd | 12 - man/get_policy_measures.Rd | 4 man/get_psnb.Rd | 10 - man/get_psnd.Rd | 10 - man/get_public_finances.Rd | 10 - man/get_receipts.Rd | 10 - man/get_welfare_spending.Rd | 12 - man/list_efo_economy_measures.Rd | 12 - man/list_forecast_series.Rd | 12 - man/obr-package.Rd | 5 man/obr_actual_vs_forecast.Rd | 12 - man/obr_as_of.Rd | 10 - man/obr_compare_vintages.Rd | 12 - man/obr_efo_catalogue.Rd | 17 +- man/obr_efo_vintages.Rd | 10 - man/obr_fiscal_rules.Rd | 4 man/obr_forecast_panel.Rd | 12 - man/obr_headroom.Rd | 4 man/obr_pin.Rd | 10 - man/obr_pinned.Rd | 10 - man/obr_unpin.Rd | 10 - man/policy_measures_summary.Rd | 4 tests/testthat/test-efo-table.R | 29 ++- tests/testthat/test-forecasts.R | 19 ++ tests/testthat/test-public-finances.R | 6 tests/testthat/test-tbl.R | 11 + tests/testthat/test-utils.R | 41 ++++ tests/testthat/test-vintages.R | 4 tests/testthat/test-welfare.R | 12 + 54 files changed, 816 insertions(+), 450 deletions(-)
Title: Download and Tidy 'HMRC' Statistical Data
Description: Provides functions to download, parse, and tidy statistical
data published by 'HM Revenue and Customs' ('HMRC') on 'GOV.UK'.
Returns annotated 'hmrc_tbl' data frames with provenance metadata
(source URL, publication date, fetch time, cell methods) for
reproducible fiscal research. Covers monthly tax receipts (42 series),
'VAT' (from 1973), fuel duties (from 1990), tobacco duties (from 1991),
'Corporation Tax' receipts, stamp duty, research and development tax
credits (from 2000), tax gap estimates (from 2005), 'Income Tax'
liabilities by income range, Capital Gains Tax, Inheritance Tax, the
Patent Box, creative industries reliefs, and monthly property
transaction counts. File URLs are resolved at runtime via the 'GOV.UK'
Content API <https://www.gov.uk/api/content>, so data is always current
without hardcoded URLs. Files are cached locally between sessions.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between hmrc versions 0.4.0 dated 2026-04-26 and 0.4.1 dated 2026-11-01
DESCRIPTION | 26 - MD5 | 145 +++---- NEWS.md | 110 +++++ R/data.R | 11 R/deprec.R | 2 R/hmrc-package.R | 40 - R/hmrc-tbl.R | 25 - R/hmrc_cache_info.R | 2 R/hmrc_capital_gains.R | 145 +++---- R/hmrc_clear_cache.R | 6 R/hmrc_corporation_tax.R | 41 + R/hmrc_creative_industries.R | 161 ++++--- R/hmrc_fuel_duties.R | 124 ++---- R/hmrc_income_tax_stats.R | 114 +++-- R/hmrc_inheritance_tax.R | 52 +- R/hmrc_list_tax_heads.R | 4 R/hmrc_patent_box.R | 62 +-- R/hmrc_property_transactions.R | 65 +-- R/hmrc_rd_credits.R | 128 +++--- R/hmrc_stamp_duty.R | 89 ++-- R/hmrc_tax_gap.R | 174 +++++--- R/hmrc_tax_receipts.R | 102 +++- R/hmrc_tobacco_duties.R | 102 +--- R/hmrc_vat.R | 87 +--- R/utils-dates.R | 2 R/utils-govuk-api.R | 102 +++- R/utils-parse.R |only README.md | 475 ++++++++++++----------- data/catalogue.rda |binary data/tax_heads.rda |binary inst/WORDLIST | 138 +++--- inst/doc/uk-tax-receipts.R | 33 - inst/doc/uk-tax-receipts.Rmd | 73 +-- inst/doc/uk-tax-receipts.html | 80 +-- man/hmrc-package.Rd | 45 +- man/hmrc_cache_info.Rd | 14 man/hmrc_capital_gains.Rd | 51 +- man/hmrc_clear_cache.Rd | 16 man/hmrc_corporation_tax.Rd | 35 - man/hmrc_creative_industries.Rd | 54 +- man/hmrc_fuel_duties.Rd | 44 +- man/hmrc_income_tax_stats.Rd | 46 +- man/hmrc_inheritance_tax.Rd | 41 + man/hmrc_list_tax_heads.Rd | 16 man/hmrc_meta.Rd | 25 - man/hmrc_patent_box.Rd | 37 - man/hmrc_property_transactions.Rd | 41 + man/hmrc_publications.Rd | 12 man/hmrc_rd_credits.Rd | 59 +- man/hmrc_search.Rd | 12 man/hmrc_stamp_duty.Rd | 45 +- man/hmrc_tax_gap.Rd | 80 ++- man/hmrc_tax_receipts.Rd | 51 +- man/hmrc_tobacco_duties.Rd | 42 +- man/hmrc_vat.Rd | 36 - man/tax_heads.Rd | 11 tests/testthat/setup.R |only tests/testthat/test-hmrc_capital_gains.R | 17 tests/testthat/test-hmrc_clear_cache.R | 2 tests/testthat/test-hmrc_corporation_tax.R | 12 tests/testthat/test-hmrc_creative_industries.R | 61 ++ tests/testthat/test-hmrc_fuel_duties.R | 22 + tests/testthat/test-hmrc_income_tax_stats.R | 14 tests/testthat/test-hmrc_inheritance_tax.R | 14 tests/testthat/test-hmrc_list_tax_heads.R | 1 tests/testthat/test-hmrc_patent_box.R | 4 tests/testthat/test-hmrc_property_transactions.R | 12 tests/testthat/test-hmrc_rd_credits.R | 33 + tests/testthat/test-hmrc_stamp_duty.R | 17 tests/testthat/test-hmrc_tax_gap.R | 32 + tests/testthat/test-hmrc_tax_receipts.R | 15 tests/testthat/test-hmrc_tobacco_duties.R | 16 tests/testthat/test-hmrc_vat.R | 15 tests/testthat/test-utils-parse.R |only vignettes/uk-tax-receipts.Rmd | 73 +-- 75 files changed, 2249 insertions(+), 1644 deletions(-)
Title: Identify and Correct Invalid HGNC Human Gene Symbols and MGI
Mouse Gene Symbols
Description: Contains functions for
identifying and correcting HGNC human gene symbols and MGI mouse gene symbols
which have been converted to date format by Excel, withdrawn, or aliased.
Also contains functions for reversibly converting between HGNC
symbols and valid R names.
Author: Sehyun Oh [aut],
Ayush Aggarwal [aut],
Markus Riester [aut],
Levi Waldron [aut, cre]
Maintainer: Levi Waldron <lwaldron.research@gmail.com>
Diff between HGNChelper versions 0.8.15 dated 2024-11-16 and 0.8.16 dated 2026-11-01
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- NEWS | 5 +++++ R/data.R | 2 +- build/vignette.rds |binary data/hgnc.table.rda |binary data/mouse.table.rda |binary inst/doc/index.R | 2 +- inst/doc/index.html | 22 +++++++++++----------- inst/extdata/date_of_last_update.txt | 2 +- man/HGNChelper-package.Rd | 1 + man/hgnc.table.Rd | 4 ++-- man/mouse.table.Rd | 6 +++--- tests/testthat/test_checkGeneSymbols.R | 4 ++-- 14 files changed, 45 insertions(+), 39 deletions(-)
Title: HM Treasury Green Book Cost-Benefit Analysis Primitives
Description: Implements cost-benefit analysis primitives from HM
Treasury Green Book guidance (HM Treasury, 2026): the kinked
Social Time Preference Rate (STPR) as revised in October 2026,
with the earlier schedule retained for reproducibility, discount factors,
net present value (NPV), equivalent annual cost, and real-terms
rebasing using the GDP deflator. Designed for UK central government
appraisal and evaluation. Bundled parameter tables carry vintage
metadata for reproducibility.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between greenbook versions 0.1.1 dated 2026-08-24 and 0.2.0 dated 2026-11-01
DESCRIPTION | 13 +-- MD5 | 126 +++++++++++++++++------------------ NAMESPACE | 12 +-- NEWS.md | 56 +++++++++++++++ R/appraise.R | 13 ++- R/carbon.R | 7 + R/deflator.R | 15 +++- R/discounting.R | 35 ++++++--- R/distributional.R | 27 ++++--- R/lookups.R | 13 ++- R/reporting.R | 3 R/stpr.R | 121 +++++++++++++++++++++++++-------- R/validate.R | 7 + README.md | 23 +++++- inst/CITATION | 2 inst/doc/carbon-and-environment.html | 52 +++++++------- inst/doc/greenbook.R | 8 +- inst/doc/greenbook.Rmd | 24 ++++-- inst/doc/greenbook.html | 109 ++++++++++++++++-------------- inst/extdata/data_versions.csv | 12 +-- inst/extdata/gdp_deflator.csv | 79 +++++++++++---------- inst/extdata/stpr_schedule.csv | 17 ++-- man/gb_apply_ob.Rd | 6 - man/gb_appraise.Rd | 22 +++--- man/gb_carbon_npv.Rd | 10 +- man/gb_carbon_value.Rd | 4 - man/gb_categories.Rd | 6 - man/gb_compare.Rd | 16 ++-- man/gb_cost_per_unit.Rd | 10 +- man/gb_data_versions.Rd | 4 - man/gb_deflator.Rd | 22 ++++-- man/gb_discount.Rd | 20 +++-- man/gb_discount_factor.Rd | 21 ++++- man/gb_dist_weight.Rd | 22 +++--- man/gb_dist_weighted_npv.Rd | 13 +-- man/gb_eanc.Rd | 16 ++-- man/gb_economic_case.Rd | 16 ++-- man/gb_headline.Rd | 10 +- man/gb_npv.Rd | 18 ++--- man/gb_optimism_bias.Rd | 6 - man/gb_place_based.Rd | 16 ++-- man/gb_progression.Rd | 16 ++-- man/gb_qaly.Rd | 6 - man/gb_real.Rd | 6 - man/gb_rebase.Rd | 6 - man/gb_risk_register.Rd | 16 ++-- man/gb_schedule_table.Rd | 14 ++- man/gb_sensitivity_ob.Rd | 16 ++-- man/gb_stpr.Rd | 82 +++++++++++++--------- man/gb_to_excel.Rd | 10 +- man/gb_to_latex.Rd | 10 +- man/gb_to_word.Rd | 10 +- man/gb_validate.Rd | 16 ++-- man/gb_vpf.Rd | 6 - man/gb_wellby.Rd | 6 - man/greenbook-package.Rd | 5 + tests/testthat/test-appraise.R | 6 + tests/testthat/test-discounting.R | 27 ++++--- tests/testthat/test-distributional.R | 8 +- tests/testthat/test-invariants.R | 25 ++++-- tests/testthat/test-lookups.R | 7 + tests/testthat/test-stpr.R | 96 +++++++++++++++----------- tests/testthat/test-validate.R | 5 + vignettes/greenbook.Rmd | 24 ++++-- 64 files changed, 892 insertions(+), 563 deletions(-)
Title: Access 'Federal Reserve Economic Data'
Description: Provides clean, tidy access to economic data from the 'Federal
Reserve Economic Data' ('FRED') API <https://fred.stlouisfed.org/docs/api/fred/>.
'FRED' is maintained by the 'Federal Reserve Bank of St. Louis' and contains over
800,000 time series from 118 sources covering GDP, employment, inflation,
interest rates, trade, and more. Dedicated functions fetch series observations,
search for series, browse categories, releases, and tags, and retrieve series
metadata. Multiple series can be fetched in a single call, in long or wide
format. Server-side unit transformations (percent change, log, etc.) and
frequency aggregation are supported, with readable transform aliases such as
'yoy_pct' and 'log_diff'. Real-time and vintage helpers (built on 'ALFRED')
return a series as it appeared on a given date, the first-release version,
every revision, or a panel of selected vintages. An offline curated catalogue
of around fifty popular series, NBER recession reference dates, and FOMC
meeting [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between fred versions 0.3.1 dated 2026-09-09 and 0.3.2 dated 2026-11-01
DESCRIPTION | 8 MD5 | 95 - NEWS.md | 29 R/cache.R | 2 R/manifest.R | 3 R/request.R | 14 R/series.R | 23 R/vintages.R | 6 inst/doc/inflation-revisions.html | 12 inst/doc/multi-series-workflows.html | 1783 +++++++++++++++++------------------ inst/doc/nowcasting-with-fred.html | 36 man/clear_cache.Rd | 10 man/fred-package.Rd | 5 man/fred_aggregate.Rd | 6 man/fred_all_vintages.Rd | 11 man/fred_as_of.Rd | 11 man/fred_browse.Rd | 4 man/fred_cache_info.Rd | 10 man/fred_catalogue.Rd | 4 man/fred_category.Rd | 6 man/fred_category_children.Rd | 6 man/fred_category_series.Rd | 6 man/fred_cite_series.Rd | 6 man/fred_event_window.Rd | 6 man/fred_first_release.Rd | 11 man/fred_fomc_dates.Rd | 4 man/fred_get_key.Rd | 10 man/fred_info.Rd | 10 man/fred_interpolate.Rd | 6 man/fred_manifest.Rd | 6 man/fred_real_time_panel.Rd | 11 man/fred_recession_dates.Rd | 4 man/fred_related_tags.Rd | 4 man/fred_release_dates.Rd | 6 man/fred_release_series.Rd | 6 man/fred_releases.Rd | 6 man/fred_request.Rd | 10 man/fred_search.Rd | 10 man/fred_series.Rd | 16 man/fred_set_key.Rd | 10 man/fred_source_releases.Rd | 4 man/fred_sources.Rd | 4 man/fred_tags.Rd | 4 man/fred_updates.Rd | 10 man/fred_vintage_revisions.Rd | 9 man/fred_vintages.Rd | 10 man/plot.fred_tbl.Rd | 2 tests/testthat/test-cache.R | 38 tests/testthat/test-request.R |only 49 files changed, 1217 insertions(+), 1096 deletions(-)
Title: Debt Sustainability Analysis and Fiscal Risk Assessment
Description: Analyses government debt sustainability using the standard debt
dynamics framework from Blanchard (1990) <doi:10.1787/435618162862>
and the IMF Debt Sustainability Analysis methodology (IMF, 2013) and the
Sovereign Risk and Debt Sustainability Framework (IMF, 2022). Projects
debt-to-GDP paths, decomposes historical debt changes into interest,
growth, and primary balance contributions, and estimates fiscal reaction
functions following Bohn (1998) <doi:10.1162/003355398555793>. Produces stochastic
fan charts via Monte Carlo simulation, standardised stress tests, and IMF-
style heat map risk assessments. Computes S1/S2 sustainability gap
indicators used by the European Commission. All methods are pure
computation with no external dependencies beyond base R; works with fiscal
data from any source.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between debtkit versions 0.1.3 dated 2026-09-08 and 0.1.4 dated 2026-11-01
DESCRIPTION | 10 +-- MD5 | 35 ++++++------ NAMESPACE | 82 +++++++++++++++------------- NEWS.md | 51 +++++++++++++++++ R/bohn.R | 4 + R/decompose.R | 2 R/fan_chart.R | 9 +++ R/project.R | 2 R/rg.R | 2 R/sustainability_gap.R | 39 ++++--------- README.md | 88 +++++++++++++++++++------------ man/debtkit-package.Rd | 7 ++ man/dk_decompose.Rd | 2 man/dk_fan_chart.Rd | 10 +++ man/dk_project.Rd | 2 man/dk_rg.Rd | 2 man/dk_sustainability_gap.Rd | 6 +- tests/testthat/Rplots.pdf |only tests/testthat/test-sustainability_gap.R | 21 +++++++ 19 files changed, 247 insertions(+), 127 deletions(-)
Title: Download Australian Energy Market Operator Data
Description: Fetch Australian Energy Market Operator (AEMO)
public data from 'NEMweb' <http://nemweb.com.au> and the
Market Management System Data Model (MMSDM) historical
archive. Provides tidy access to 5-minute and 30-minute
wholesale electricity prices, regional demand, dispatch-unit
output, interconnector flows, rooftop photovoltaic generation,
generator bids, predispatch forecasts, frequency control
ancillary services markets, and gas market data across the
National Electricity Market (NEM) regions. Data is published
by AEMO under its Copyright Permissions Notice
<https://www.aemo.com.au/privacy-and-legal-notices/copyright-permissions>.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between aemo versions 0.4.2 dated 2026-09-09 and 0.4.3 dated 2026-11-01
DESCRIPTION | 8 - MD5 | 110 ++++++++++---------- NEWS.md | 93 ++++++++++++++++ R/aemo-package.R | 2 R/aemo_tbl.R | 4 R/bids.R | 35 ++---- R/constraints.R | 2 R/csv_parse.R | 54 +++++++-- R/demand.R | 2 R/dispatch.R | 6 - R/forecasts.R | 4 R/gas.R | 2 R/http.R | 14 ++ R/interconnector.R | 2 R/loss_factors.R | 111 ++++++++++++-------- R/nemweb.R | 9 + R/price.R | 15 +- R/reference.R | 6 - R/rooftop_pv.R | 2 R/snapshot.R | 2 R/utils.R | 197 ++++++++++++++++++++++-------------- man/aemo-package.Rd | 7 + man/aemo_bids.Rd | 20 +-- man/aemo_cache_info.Rd | 6 - man/aemo_clear_cache.Rd | 6 - man/aemo_constraints.Rd | 20 +-- man/aemo_dispatch_units.Rd | 20 +-- man/aemo_dlf.Rd | 18 +-- man/aemo_fcas.Rd | 4 man/aemo_fcas_enablement.Rd | 20 +-- man/aemo_gencon.Rd | 20 +-- man/aemo_interconnector.Rd | 20 +-- man/aemo_interconnectors.Rd | 18 +-- man/aemo_market_notices.Rd | 20 +-- man/aemo_mlf.Rd | 48 ++++---- man/aemo_nemweb_download.Rd | 4 man/aemo_nemweb_ls.Rd | 6 - man/aemo_outages.Rd | 20 +-- man/aemo_participants.Rd | 18 +-- man/aemo_pasa.Rd | 4 man/aemo_predispatch.Rd | 4 man/aemo_price.Rd | 17 +-- man/aemo_price_caps.Rd | 18 +-- man/aemo_regions.Rd | 18 +-- man/aemo_rooftop_pv.Rd | 20 +-- man/aemo_settlement.Rd | 18 +-- man/aemo_snapshot.Rd | 20 +-- man/aemo_spd_constraints.Rd | 20 +-- man/aemo_throttle.Rd | 6 - man/aemo_units.Rd | 18 +-- man/print.aemo_tbl.Rd | 2 tests/testthat/test-demand.R | 4 tests/testthat/test-loss-factors.R | 29 +++++ tests/testthat/test-pinned-values.R | 100 +++++++++++------- tests/testthat/test-price.R | 4 tests/testthat/test-utils.R | 41 +++++++ 56 files changed, 824 insertions(+), 494 deletions(-)
Title: Fit Log-Ratio Lasso Regression for Compositional Data
Description: Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.
Author: Teng Fei [aut, cre, cph] ,
Tyler Funnell [aut] ,
Nicholas Waters [aut] ,
Sandeep Raj [aut]
Maintainer: Teng Fei <feit1@mskcc.org>
Diff between FLORAL versions 0.7.0 dated 2026-02-07 and 0.7.1 dated 2026-11-01
DESCRIPTION | 8 MD5 | 26 - NEWS.md | 4 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/Using-FLORAL-for-Microbiome-Analysis.Rmd | 4 inst/doc/Using-FLORAL-for-Microbiome-Analysis.html | 139 +++++----- inst/doc/Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd | 4 inst/doc/Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.html | 27 - inst/doc/Using-FLORAL-with-phyloseq.Rmd | 4 inst/doc/Using-FLORAL-with-phyloseq.html | 5 vignettes/Using-FLORAL-for-Microbiome-Analysis.Rmd | 4 vignettes/Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd | 4 vignettes/Using-FLORAL-with-phyloseq.Rmd | 4 14 files changed, 120 insertions(+), 114 deletions(-)
Title: Nonparametric Preprocessing for Parametric Causal Inference
Description: Selects matched samples of the original treated and
control groups with similar covariate distributions -- can be
used to match exactly on covariates, to match on propensity
scores, or perform a variety of other matching procedures. The
package also implements a series of recommendations offered in
Ho, Imai, King, and Stuart (2007) <DOI:10.1093/pan/mpl013>. (The
'gurobi' package, which is not on CRAN, is optional and comes with
an installation of the Gurobi Optimizer, available at
<https://www.gurobi.com>.)
Author: Daniel Ho [aut] ,
Kosuke Imai [aut] ,
Gary King [aut] ,
Elizabeth Stuart [aut] ,
Alex Whitworth [ctb],
Noah Greifer [cre, aut]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between MatchIt versions 4.8.1 dated 2026-09-26 and 4.8.2 dated 2026-11-01
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 6 ++++++ R/plot.matchit.R | 7 ++++--- build/stage23.rdb |binary inst/doc/MatchIt.html | 10 +++++----- inst/doc/assessing-balance.html | 26 +++++++++++++------------- inst/doc/estimating-effects.html | 4 ++-- inst/doc/matching-methods.html | 4 ++-- inst/doc/sampling-weights.html | 4 ++-- tests/testthat/test-method_null.R | 6 ++++-- tests/testthat/test-method_optimal.R | 6 +++++- tests/testthat/test-plot.R | 12 ++++++++++++ 13 files changed, 70 insertions(+), 45 deletions(-)
Title: Conconi Estimate of Anaerobic Threshold from a TCX File
Description: Analyzes data from a Conconi et al. (1996) <doi:10.1055/s-2007-972887>
treadmill fitness test where speed is augmented by a constant amount every
set number of seconds to estimate the anaerobic (lactate) threshold speed
and heart rate. It reads a TCX file, allows optional removal observations
from before and after the actual test, fits a change-point linear model
where the change-point is the estimate of the lactate threshold, and plots
the data points and fit model. Details of administering the fitness test are
provided in the package vignette. Functions work by default for Garmin
Connect TCX exports but may require additional data preparation for heart
rate, time, and speed data from other sources.
Author: Levi Waldron [aut, cre]
Maintainer: Levi Waldron <lwaldron.research@gmail.com>
Diff between ConconiAnaerobicThresholdTest versions 1.0.0 dated 2024-01-22 and 1.1.0 dated 2026-11-01
DESCRIPTION | 8 +++--- MD5 | 12 +++++----- NEWS.md |only build/vignette.rds |binary inst/doc/usage.Rmd | 15 ++++++++++++ inst/doc/usage.html | 62 +++++++++++++++++++++++++++++++++------------------- inst/scripts |only vignettes/usage.Rmd | 15 ++++++++++++ 8 files changed, 81 insertions(+), 31 deletions(-)
More information about ConconiAnaerobicThresholdTest at CRAN
Permanent link
Title: Publication-Ready Tables for Descriptive Statistics and
Regression Models
Description: Provides publication-ready tables for descriptive statistics
and regression models: frequency tables and cross-tabulations with
association measures (Cramér's V, Kendall's Tau-b, and others),
categorical and continuous summary tables, by group or from a complex
survey design, and regression tables for one or more models side by
side, across more than thirty model classes from mixed-effects to
survival and Bayesian, with robust standard errors, average marginal
effects, and univariable screening. Tables follow APA conventions by
default, can switch to named journal styles such as JAMA, NEJM, or
The Lancet, and render identically in the console and in 'gt',
'tinytable', 'flextable', 'Word', 'Excel', or the clipboard. Declared
missing values in labelled data are honored and disclosed throughout
the descriptive tables. Helpers cover codebooks, variable inspection,
and row-wise summaries.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.14.0 dated 2026-10-31 and 0.14.1 dated 2026-11-01
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ inst/doc/spicy.html | 2 +- tests/testthat/test-table_categorical_svy.R | 2 +- tests/testthat/test-table_continuous_svy.R | 2 +- tests/testthat/test-table_multiresponse.R | 2 +- 7 files changed, 19 insertions(+), 13 deletions(-)
Title: Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 3.9.0 dated 2026-09-22 and 3.10.0 dated 2026-11-01
DESCRIPTION | 8 MD5 | 68 ++-- NAMESPACE | 1 NEWS.md | 123 ++++++++ R/generic.predict.rfsrc.R | 31 +- R/imbalanced.rfsrc.R | 4 R/impute.learn.rfsrc.R | 136 +++++++-- R/impute.rfsrc.R | 39 ++ R/partial.rfsrc.R | 3 R/print.rfsrc.R | 28 + R/rfsrc.R | 71 ++++ R/rfsrc.RNGversion.R |only R/sidClustering.rfsrc.R | 43 ++ R/utilities.R | 13 R/utilities_data.R | 71 ++++ R/utilities_impute_learn.R | 575 +++++++++++++++++++++++++++++++++++---- R/utilities_saveload.R | 102 +++++- man/fast.saveload.Rd | 34 ++ man/imbalanced.rfsrc.Rd | 173 ++++++++++- man/impute.learn.rfsrc.Rd | 207 +++++++++++--- man/impute.rfsrc.Rd | 355 ++++++++++++++---------- man/nutrigenomic.Rd | 19 - man/plot.quantreg.rfsrc.Rd | 240 ++++++---------- man/predict.rfsrc.Rd | 49 ++- man/quantreg.rfsrc.Rd | 632 +++++++++++++++++++++---------------------- man/rfsrc.RNGversion.Rd |only man/rfsrc.Rd | 94 ++++-- man/sidClustering.rfsrc.Rd | 12 src/R_init_randomForestSRC.c | 8 src/entry.c | 15 + src/entry.h | 2 src/external.h | 1 src/internal.c | 1 src/random.c | 31 ++ src/random.h | 4 src/rfsrc.c | 68 +--- 36 files changed, 2327 insertions(+), 934 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Fast and Friendly Access to OECD Data
Description: Discover, describe, compare and import statistical datasets from
the Organisation for Economic Co-operation and Development (OECD) via its
public Statistical Data and Metadata eXchange (SDMX) Representational
State Transfer (REST) API <https://sdmx.oecd.org/public/>. Adapts the
discovery workflow of 'eurodata' to OECD-native names, catalogue-resolved
short codes and dataset-scoped metadata. Uses SDMX REST version 2 by
default, streamed downloads, native 'data.table' parsing, defensive
bulk C XML extraction, indexed structural metadata resolution, caching
and bounded HTTP retries. Includes an
explicit version 1 transport for interoperability.
Author: Alek Rutkowski [aut, cre, cph]
Maintainer: Alek Rutkowski <alek.rutkowski@gmail.com>
Diff between OECDdata versions 0.2.5 dated 2026-10-30 and 0.3.4 dated 2026-11-01
OECDdata-0.2.5/OECDdata/inst/VALIDATION.md |only OECDdata-0.2.5/OECDdata/inst/benchmarks |only OECDdata-0.2.5/OECDdata/inst/validation |only OECDdata-0.3.4/OECDdata/DESCRIPTION | 20 OECDdata-0.3.4/OECDdata/MD5 | 52 OECDdata-0.3.4/OECDdata/NAMESPACE | 1 OECDdata-0.3.4/OECDdata/NEWS.md |only OECDdata-0.3.4/OECDdata/R/http.R | 4 OECDdata-0.3.4/OECDdata/R/import.R | 2 OECDdata-0.3.4/OECDdata/R/options.R | 2 OECDdata-0.3.4/OECDdata/R/structure.R | 4 OECDdata-0.3.4/OECDdata/R/xml.R | 108 OECDdata-0.3.4/OECDdata/README.md | 956 -------- OECDdata-0.3.4/OECDdata/build/vignette.rds |binary OECDdata-0.3.4/OECDdata/cleanup |only OECDdata-0.3.4/OECDdata/cleanup.win |only OECDdata-0.3.4/OECDdata/configure |only OECDdata-0.3.4/OECDdata/configure.win |only OECDdata-0.3.4/OECDdata/inst/ATTRIBUTION.md | 11 OECDdata-0.3.4/OECDdata/inst/SOURCES.md | 34 OECDdata-0.3.4/OECDdata/inst/doc/getting-started.R | 174 - OECDdata-0.3.4/OECDdata/inst/doc/getting-started.html | 1157 ++++------ OECDdata-0.3.4/OECDdata/man/OECDdata-package.Rd | 4 OECDdata-0.3.4/OECDdata/src |only OECDdata-0.3.4/OECDdata/tests/testthat.R | 14 OECDdata-0.3.4/OECDdata/tests/testthat/helper-fixtures.R | 12 OECDdata-0.3.4/OECDdata/tests/testthat/test-native-error-handlers.R |only OECDdata-0.3.4/OECDdata/tests/testthat/test-native-xml.R |only OECDdata-0.3.4/OECDdata/tests/testthat/test-regressions.R | 8 OECDdata-0.3.4/OECDdata/tests/testthat/test-search-options.R | 45 OECDdata-0.3.4/OECDdata/tests/testthat/test-xml.R | 6 31 files changed, 901 insertions(+), 1713 deletions(-)
Title: Uncertainty Analysis in Dynamic Site and Slope Response
Description: Estimates the seismic response of sites and slopes from the
results of a seismic hazard analysis. For a site, it computes the
fundamental period of the soil profile and the amplification of
spectral acceleration. For a slope, it computes the fundamental
period, the earthquake-induced displacement, and the pseudostatic
coefficient that keeps a selected quantile of the displacement
within a given limit. Uncertainty in the soil profile and in the
ground motion is represented by Monte Carlo samples. Every result is
reported with its representative value, its applicable quantiles or
dispersion, and the population or conditioning to which it refers.
Author: Alejandro Verri Kozlowski [aut, cre, cph]
Maintainer: Alejandro Verri Kozlowski <averri@fi.uba.ar>
Diff between newmark versions 1.9.0 dated 2026-10-24 and 1.10.0 dated 2026-11-01
newmark-1.10.0/newmark/DESCRIPTION | 6 newmark-1.10.0/newmark/MD5 | 142 +++++----- newmark-1.10.0/newmark/NAMESPACE | 2 newmark-1.10.0/newmark/NEWS.md | 89 ++++++ newmark-1.10.0/newmark/R/assembleDnTables.R | 8 newmark-1.10.0/newmark/R/assembleKmaxTables.R | 4 newmark-1.10.0/newmark/R/buildDnTables.R | 45 ++- newmark-1.10.0/newmark/R/buildKmaxTable.R | 33 -- newmark-1.10.0/newmark/R/buildPGATable.R | 2 newmark-1.10.0/newmark/R/buildQuantileSpline.R | 4 newmark-1.10.0/newmark/R/conditions.R |only newmark-1.10.0/newmark/R/convertAEP.R | 2 newmark-1.10.0/newmark/R/correlateResiduals.R | 4 newmark-1.10.0/newmark/R/data.R | 19 + newmark-1.10.0/newmark/R/describeModule.R | 68 ++++ newmark-1.10.0/newmark/R/estimateAI.R | 12 newmark-1.10.0/newmark/R/estimatePGV.R | 12 newmark-1.10.0/newmark/R/estimateRayleighPeriod.R | 4 newmark-1.10.0/newmark/R/estimateVS30.R | 7 newmark-1.10.0/newmark/R/evaluateSiteFactor.R | 4 newmark-1.10.0/newmark/R/evaluateSiteSa.R | 4 newmark-1.10.0/newmark/R/evaluateSoilLayers.R | 6 newmark-1.10.0/newmark/R/evaluateUniformHazard.R | 6 newmark-1.10.0/newmark/R/integrateDnHazard.R |only newmark-1.10.0/newmark/R/integrateSiteMixture.R | 6 newmark-1.10.0/newmark/R/integrateSiteSpectrum.R | 10 newmark-1.10.0/newmark/R/interpolateSpectrum.R | 4 newmark-1.10.0/newmark/R/listDisplacementFamilies.R |only newmark-1.10.0/newmark/R/listProjectTables.R | 2 newmark-1.10.0/newmark/R/newmark-package.R | 55 ++- newmark-1.10.0/newmark/R/processProject.R | 55 ++- newmark-1.10.0/newmark/R/queryProjectTable.R | 2 newmark-1.10.0/newmark/R/readHazardWorkbook.R | 2 newmark-1.10.0/newmark/R/sampleSoilLayers.R | 17 + newmark-1.10.0/newmark/R/sampleSpectra.R | 17 - newmark-1.10.0/newmark/R/selectDisplacementModels.R | 4 newmark-1.10.0/newmark/R/summarizeProfiles.R | 2 newmark-1.10.0/newmark/data/VancouverSpectra.rda |only newmark-1.10.0/newmark/inst/api/operations.json | 9 newmark-1.10.0/newmark/man/VancouverSpectra.Rd |only newmark-1.10.0/newmark/man/buildDnTables.Rd | 3 newmark-1.10.0/newmark/man/convertAEP.Rd | 2 newmark-1.10.0/newmark/man/describeModule.Rd | 20 + newmark-1.10.0/newmark/man/estimateAI.Rd | 11 newmark-1.10.0/newmark/man/estimatePGV.Rd | 11 newmark-1.10.0/newmark/man/evaluateSiteSa.Rd | 4 newmark-1.10.0/newmark/man/evaluateUniformHazard.Rd | 4 newmark-1.10.0/newmark/man/integrateDnHazard.Rd |only newmark-1.10.0/newmark/man/listDisplacementFamilies.Rd |only newmark-1.10.0/newmark/man/newmark-package.Rd | 56 ++- newmark-1.10.0/newmark/man/processProject.Rd | 4 newmark-1.10.0/newmark/man/sampleSoilLayers.Rd | 7 newmark-1.10.0/newmark/tests/testthat/test-assembleKmaxTables.R | 8 newmark-1.10.0/newmark/tests/testthat/test-buildKmaxTable.R |only newmark-1.10.0/newmark/tests/testthat/test-buildPGATable.R |only newmark-1.10.0/newmark/tests/testthat/test-buildShearTable.R | 1 newmark-1.10.0/newmark/tests/testthat/test-conditions.R |only newmark-1.10.0/newmark/tests/testthat/test-convertAEP.R |only newmark-1.10.0/newmark/tests/testthat/test-displacementModels.R |only newmark-1.10.0/newmark/tests/testthat/test-displacementSampling.R |only newmark-1.10.0/newmark/tests/testthat/test-displacementTables.R |only newmark-1.10.0/newmark/tests/testthat/test-evaluateUniformHazard.R |only newmark-1.10.0/newmark/tests/testthat/test-integrateDnHazard.R |only newmark-1.10.0/newmark/tests/testthat/test-listDisplacementFamilies.R |only newmark-1.10.0/newmark/tests/testthat/test-operations.R | 45 +++ newmark-1.10.0/newmark/tests/testthat/test-processProject.R | 90 +++++- newmark-1.10.0/newmark/tests/testthat/test-profile.R | 10 newmark-1.10.0/newmark/tests/testthat/test-profilePeriods.R |only newmark-1.10.0/newmark/tests/testthat/test-rootModel.R |only newmark-1.10.0/newmark/tests/testthat/test-siteFactor.R |only newmark-1.10.0/newmark/tests/testthat/test-siteMixture.R |only newmark-1.10.0/newmark/tests/testthat/test-siteSpectrum.R |only newmark-1.10.0/newmark/tests/testthat/test-soilRealizations.R |only newmark-1.10.0/newmark/tests/testthat/test-solveColumnPeriod.R |only newmark-1.10.0/newmark/tests/testthat/test-solveKmax.R |only newmark-1.10.0/newmark/tests/testthat/test-solveWedgePeriod.R |only newmark-1.10.0/newmark/tests/testthat/test-summarizeKmax.R |only newmark-1.9.0/newmark/tests/testthat/test-dn-models.R |only newmark-1.9.0/newmark/tests/testthat/test-dn-products.R |only newmark-1.9.0/newmark/tests/testthat/test-dn-sampling.R |only newmark-1.9.0/newmark/tests/testthat/test-hazard-calculations.R |only newmark-1.9.0/newmark/tests/testthat/test-hazard-readers.R |only newmark-1.9.0/newmark/tests/testthat/test-kmax-solve.R |only newmark-1.9.0/newmark/tests/testthat/test-kmax-summary.R |only newmark-1.9.0/newmark/tests/testthat/test-kmax-table.R |only newmark-1.9.0/newmark/tests/testthat/test-period-column.R |only newmark-1.9.0/newmark/tests/testthat/test-period-properties.R |only newmark-1.9.0/newmark/tests/testthat/test-period-wedge.R |only newmark-1.9.0/newmark/tests/testthat/test-realizations.R |only newmark-1.9.0/newmark/tests/testthat/test-roots.R |only newmark-1.9.0/newmark/tests/testthat/test-siteResponse-factor.R |only newmark-1.9.0/newmark/tests/testthat/test-siteResponse-mixture.R |only newmark-1.9.0/newmark/tests/testthat/test-siteResponse-products.R |only newmark-1.9.0/newmark/tests/testthat/test-siteResponse-spectrum.R |only 94 files changed, 693 insertions(+), 251 deletions(-)
Title: Additional Documentation and Regression Tests for
'stats::free1way()'
Description: Function 'stats::free1way()' implements semiparametrically
efficient population- and permutation-based inference in
distribution-free stratified K-sample oneway layouts. This package
provides additional documentation, including a detailed description
of the implementation, and serves as a home for extensive regression tests.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Frank E Harrell Jr [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between free1way.docreg versions 1.0-3 dated 2026-09-08 and 1.1-0 dated 2026-11-01
DESCRIPTION | 11 MD5 | 79 - NAMESPACE | 16 R |only build/partial.rdb |only build/vignette.rds |binary cleanup | 13 inst/NEWS.Rd | 40 inst/REFERENCES.bib | 87 + inst/doc/Wilcoxon.R |only inst/doc/Wilcoxon.Rnw |only inst/doc/Wilcoxon.pdf |only inst/doc/free1way.R | 707 +++++++----- inst/doc/free1way.Rnw | 2337 ++++++++++++++++++++++++++-------------- inst/doc/free1way.pdf |binary inst/nuweb/free1way.w | 750 ++++++++++-- man |only tests/Jeffreys.R |only tests/Jeffreys.Rout.save |only tests/KM.R | 2 tests/bugfixes.R | 15 tests/confint.R | 2 tests/confint.Rout.save | 6 tests/csep.R | 3 tests/edges.R | 3 tests/empirical.R | 14 tests/empirical.Rout.save | 20 tests/exact.R | 2 tests/exact.Rout.save | 6 tests/free1way-Ex.R | 2 tests/free1way-Ex.Rout.save | 9 tests/glm.R | 2 tests/glm.Rout.save | 6 tests/jobsatisfaction.R | 2 tests/jobsatisfaction.Rout.save | 6 tests/logrank.R | 2 tests/logrank.Rout.save | 6 tests/polr.R | 2 tests/polr.Rout.save | 6 tests/power.R | 2 tests/power.Rout.save | 6 tests/speed.R | 6 vignettes/WMW.bib |only vignettes/Wilcoxon.Rnw |only vignettes/free1way.Rnw | 2337 ++++++++++++++++++++++++++-------------- 45 files changed, 4395 insertions(+), 2112 deletions(-)
More information about free1way.docreg at CRAN
Permanent link
Title: Questionnaire Analysis for Epidemiology and One Health Research
Description: Provides tools for the analysis of questionnaire and survey
data in epidemiological and One Health research. The package supports
data preparation, reliability assessment, exploratory factor analysis,
Kaiser-Meyer-Olkin assessment, parallel analysis, visualization,
reporting, and export of results using a consistent analysis workflow.
The methods are based on established approaches to psychometric and
multivariate analysis; see Kaiser (1974) <doi:10.1007/BF02291575>,
Horn (1965) <doi:10.1007/BF02289447>, and
Tabachnick and Fidell (2019, ISBN:9780134790541).
Author: Vinodh Kumar Obli Rajendran [aut, cre] ,
Keerthi Aaradhana [aut]
Maintainer: Vinodh Kumar Obli Rajendran <vinodhkumar.rajendran@gmail.com>
Diff between EpiQuestionR versions 0.1.1 dated 2026-09-10 and 0.1.2 dated 2026-11-01
DESCRIPTION | 6 - MD5 | 76 ++++++++++---------- NEWS.md | 7 + man/as.data.frame.epi_map.Rd | 6 - man/as_tibble.epi_kaiser.Rd | 4 - man/augment.epi_parallel.Rd | 2 man/autoplot.epi_map.Rd | 22 ++--- man/autoplot.epi_parallel.Rd | 6 - man/coef.epi_map.Rd | 2 man/coef.epi_parallel.Rd | 2 man/efa.Rd | 14 +-- man/export_map.Rd | 6 - man/export_map_csv.Rd | 8 +- man/export_map_excel.Rd | 6 - man/export_map_report.Rd | 8 +- man/export_parallel_tables.Rd | 2 man/glance.epi_map.Rd | 8 +- man/map_analysis_example.Rd | 8 +- man/map_eigenvalue_table.Rd | 8 +- man/map_interpretation.Rd | 4 - man/map_report_table.Rd | 2 man/map_table.Rd | 6 - man/map_test.Rd | 45 ++++++----- man/parallel_interpret.Rd | 20 ++--- man/parallel_report.Rd | 20 ++--- man/plot.epi_map.Rd | 18 ++-- man/print.epi_map.Rd | 4 - man/print.summary.epi_map.Rd | 6 - man/questionnaire_data.Rd | 10 +- man/report_map.Rd | 8 +- man/save_loading_heatmap.Rd | 4 - man/scree_plot.Rd | 2 man/sensitivity_analysis.Rd | 2 man/summary.epi_map.Rd | 12 +-- man/summary.epi_parallel.Rd | 16 ++-- man/tidy.epi_map.Rd | 6 - man/tidy.epi_parallel.Rd | 16 ++-- man/tidy.summary.epi_map.Rd | 4 - tests/testthat/test-parallel-statistical-validity.R | 9 +- 39 files changed, 213 insertions(+), 202 deletions(-)
Title: Simply Beautiful PDF Letters from Markdown
Description: Write beautiful yet customizable letters in R Markdown and
directly obtain the finished PDF. Smooth generation of PDFs is realized by
'rmarkdown', the 'pandoc-letter' template and the 'KOMA-Script' letter class.
'KOMA-Script' provides enhanced replacements for the standard 'LaTeX' classes
with emphasis on typography and versatility. 'KOMA-Script' is particularly
useful for international writers as it handles various paper formats well,
provides layouts for many common window envelope types (e.g. German, US,
French, Japanese) and lets you define your own layouts. The package comes
with a default letter layout based on 'DIN 5008B'.
Author: Robert Nuske [aut, cre] ,
Dirk Eddelbuettel [aut] ,
Aaron Wolen [aut]
Maintainer: Robert Nuske <robert.nuske@mailbox.org>
Diff between komaletter versions 0.5.0 dated 2023-02-26 and 0.5.1 dated 2026-11-01
DESCRIPTION | 16 MD5 | 44 NEWS.md | 4 R/komaletter.R | 8 README.md | 14 build/vignette.rds |binary inst/doc/intro.Rmd | 6 inst/doc/intro.html | 205 +++- inst/doc/letter_example0.pdf |binary inst/doc/letter_example1.Rmd | 2 inst/doc/letter_example1.pdf |binary inst/doc/letter_example2.pdf |binary inst/doc/letter_example3.pdf |binary inst/doc/letter_example4.pdf |binary inst/doc/parameterized_letter.R | 246 ++--- inst/doc/parameterized_letter.Rmd | 7 inst/doc/parameterized_letter.html | 458 +++++----- inst/rmarkdown/templates/pdf/resources/maintainersDelight.lco | 34 inst/rmarkdown/templates/pdf/resources/template.tex | 26 man/komaletter.Rd | 8 vignettes/intro.Rmd | 6 vignettes/letter_example1.Rmd | 2 vignettes/parameterized_letter.Rmd | 7 23 files changed, 625 insertions(+), 468 deletions(-)
Title: Health Geography Toolbox for Model-Based Analysis of Infections
Panel Data
Description: Within epidemic outbreaks, infections grow and decline differently between regions, and the velocity of spatial spread differs between countries. The swash library offers a set of model-based analyses for these topics. Spread velocity may be analysed with the Swash-Backwash Model of the Single Epidemic Wave by Cliff and Haggett (2006) <doi:10.1007/s10109-006-0027-8> and corresponding functions for bootstrap confidence intervals, country comparison, and visualization of results. Differences in epidemic growth between regions may be analysed using logistic growth models, exponential growth models, Hawkes processes and breakpoint analyses. Cluster and hotspot analyses can be conducted using neighborhood matrices. See Wieland (2020) <doi:10.18335/region.v7i2.324> for an application of some of the mentioned analysis methods. All functionalities are accessed by the class "infpan" for infections panel data defined in this package, which is built from a data.frame provided by the u [...truncated...]
Author: Thomas Wieland [aut, cre]
Maintainer: Thomas Wieland <geowieland@googlemail.com>
Diff between swash versions 3.0.2 dated 2026-10-18 and 3.0.3 dated 2026-11-01
DESCRIPTION | 10 MD5 | 60 +- NAMESPACE | 1 NEWS.md | 53 + R/config.R | 8 R/growthmodels.R | 983 +++++++++++++++++++---------------- R/helper.R | 737 +++++++++++++++++++++----- R/infpan.R | 114 ++-- R/stathelp.R | 45 + R/swash.R | 121 +++- build/partial.rdb |binary data/C19dNUTSdata.rda |binary data/COVID19Cases_geoRegion.rda |binary data/Infections.rda |binary data/K4kant20260101gf_ch2007Poly.rda |binary data/Oesterreich_Faelle.rda |binary data/RKI_Corona_counties.rda |binary data/did_fatalities_splm_coef.rda |binary inst/examples/swash_test.R | 10 man/C19dNUTSdata.Rd | 2 man/as_balanced.Rd | 10 man/binary_metrics.Rd | 6 man/breaks_growth.Rd | 6 man/exponential_growth.Rd | 8 man/hawkes_growth.Rd | 8 man/is_balanced.Rd | 11 man/logistic_growth.Rd | 8 man/swash-package.Rd | 4 man/swash.Rd | 4 man/swash_backwash.Rd | 4 tests/testthat/test-swash.R | 19 31 files changed, 1488 insertions(+), 744 deletions(-)
Title: Create Volcano Plots for Differential Gene Expression Data
Description: Creates customizable volcano plots for differential gene
expression results from RNA-seq analyses. Accepts result objects or tables
from 'DESeq2', 'edgeR', and 'limma' directly, with automatic column
detection. Labels the most significant or chosen genes, colors gene sets,
compares several contrasts side by side, offers colorblind-safe color
presets, and can produce interactive plots with 'ggiraph'. Gene tables are
rendered with 'gt' and composed with 'patchwork'.
Author: Loukas Theodosiou [aut, cre]
Maintainer: Loukas Theodosiou <theodosiou@evolbio.mpg.de>
Diff between ggvolc versions 0.1.0 dated 2026-01-16 and 0.4.0 dated 2026-11-01
DESCRIPTION | 31 +- MD5 | 41 ++- NAMESPACE | 2 NEWS.md | 117 ++++++++ R/datasets.R | 56 ++++ R/de_objects.R |only R/gene_table.R | 250 +++++++++++++++--- R/ggvolc.R | 573 ++++++++++++++++++++++++++++++++++++------ R/palettes.R |only R/utils.R |only R/zzz.R | 2 build |only data/edger_genes.RData |only data/stress_timecourse.rda |only inst |only man/de_table.Rd |only man/detect_de_source.Rd |only man/edger_genes.Rd |only man/genes_table.Rd | 82 ++++-- man/ggvolc.Rd | 199 +++++++++++++- man/ggvolc_palettes.Rd |only man/neglog10_cap.Rd |only man/select_top_genes.Rd |only man/standardize_de_columns.Rd |only man/stress_timecourse.Rd |only tests |only vignettes |only 27 files changed, 1194 insertions(+), 159 deletions(-)
Title: A Toolbox for Public Health and Epidemiology
Description: A toolbox for making R functions and capabilities more
accessible to students and professionals from Epidemiology and
Public Health related disciplines. Includes a function to report
coefficients and confidence intervals from models using robust
standard errors (when available), functions that expand 'ggplot2'
plots and functions relevant for introductory papers in Epidemiology
or Public Health. Please note that use of the
provided data sets is for educational purposes only.
Author: Josie Athens [aut, cre],
Frank Harell [ctb],
John Fox [ctb],
R-Core [ctb]
Maintainer: Josie Athens <josie.athens@gmail.com>
Diff between pubh versions 3.0.0 dated 2025-10-21 and 3.0.1 dated 2026-11-01
DESCRIPTION | 14 ++-- MD5 | 24 +++--- NAMESPACE | 1 R/display_functions.R | 51 +++++++------- R/epi_functions.R | 57 ++++------------ R/plot_functions.R | 23 +++--- build/vignette.rds |binary inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 156 +++++++++++++++++++++++++++++---------------- man/bmj.Rd | 5 - man/mhor.Rd | 18 ----- man/odds_trend.Rd | 20 +---- vignettes/introduction.Rmd | 2 13 files changed, 184 insertions(+), 189 deletions(-)
Title: Text to Speech Conversion
Description: Converts text into speech using various text-to-speech (TTS) engines and provides an unified interface for accessing their functionality.
With this package, users can easily generate audio files of spoken words, phrases, or sentences from plain text data. The package supports multiple TTS engines,
including Google's 'Cloud Text-to-Speech API', 'Amazon Polly', Microsoft's 'Cognitive Services Text to Speech REST API', the 'Speechify Text-to-Speech API', and a free TTS engine called 'Coqui TTS'.
Author: Howard Baek [aut] ,
John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between text2speech versions 1.2.0 dated 2026-09-30 and 1.2.1 dated 2026-11-01
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/tts.R | 7 ++++--- README.md | 22 +++++++++++++++------- inst/doc/coqui-tts.html | 2 +- man/tts.Rd | 7 ++++--- tests/testthat/test-tts.R | 24 ++++++++++++++++++++++++ 8 files changed, 63 insertions(+), 24 deletions(-)
Title: Manage the History of Any Object with Undo/Redo Operations
Description: Track the history of any R object and move through it with undo
and redo operations. Anything can be stored, from a single number to a data
frame or an entire application state. A manager can restrict its history to
specific classes and cap how many items it keeps, and it can be reactive
to integrate with 'Shiny'.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between undomanager versions 0.1.0 dated 2026-09-12 and 0.2.0 dated 2026-10-31
DESCRIPTION | 11 MD5 | 30 - NAMESPACE | 1 NEWS.md | 5 R/run-example.R |only R/undomanager.R | 862 +++++++++++++++++------------------ README.md | 15 inst/examples-shiny |only inst/img/hex.png |binary inst/img/social-preview.png |binary man/UndoManager-class.Rd | 15 man/run_example.Rd |only tests/testthat/_snaps/undomanager.md | 76 +++ tests/testthat/test-undomanager.R | 31 + 14 files changed, 604 insertions(+), 442 deletions(-)
Title: Language Model Agents in Live 'R' Sessions
Description: Runs language model agents in an existing 'R' session, where
generated code can inspect and modify objects already in memory. The
peter() function supports interactive chat and programmatic calls.
Conversational models use tools and return session objects; typed
decision models return logical, character or numeric vectors with
associated model probabilities. Supports the 'Anthropic'
<https://platform.claude.com/docs/en/api/overview>, 'OpenAI'
<https://developers.openai.com/api/reference/overview> and 'Google Gemini'
<https://ai.google.dev/gemini-api/docs> APIs, 'OpenAI'-compatible endpoints,
local 'Ollama' <https://ollama.com> models, and the 'Claude Code' and
'Codex' command line tools. Decision models include 'Jev', hosted by
'TypeSafe AI' <https://docs.typesafe.ai/introduction>, and the local 'Clef'.
Top-level agent calls and their executed code can be recorded in 'R'
scripts, 'R Markdown' and 'Quarto' documents, or 'Jupyter' notebooks.
Recorded 'R' scr [...truncated...]
Author: Wanjun Gu [aut, cre, cph] ,
Tianlu Zhu [ctb] ,
Gianmarco Bellucci [ctb]
Maintainer: Wanjun Gu <wanjun.gu@ucsf.edu>
Diff between gptr versions 0.7.0 dated 2025-04-05 and 1.0.0 dated 2026-10-31
gptr-0.7.0/gptr/LICENSE |only gptr-0.7.0/gptr/R/dataframe_to_text.R |only gptr-0.7.0/gptr/R/get_response.R |only gptr-0.7.0/gptr/man/dataframe_to_text.Rd |only gptr-0.7.0/gptr/man/get_response.Rd |only gptr-0.7.0/gptr/man/img |only gptr-1.0.0/gptr/DESCRIPTION | 69 + gptr-1.0.0/gptr/MD5 | 731 +++++++++++++- gptr-1.0.0/gptr/NAMESPACE | 186 +++ gptr-1.0.0/gptr/NEWS.md |only gptr-1.0.0/gptr/R/aaa-state.R |only gptr-1.0.0/gptr/R/agent-background.R |only gptr-1.0.0/gptr/R/agent-dispatch.R |only gptr-1.0.0/gptr/R/agent-loop.R |only gptr-1.0.0/gptr/R/agent-run.R |only gptr-1.0.0/gptr/R/artifact-app.R |only gptr-1.0.0/gptr/R/artifact-registry.R |only gptr-1.0.0/gptr/R/auth-childenv.R |only gptr-1.0.0/gptr/R/auth-dotenv.R |only gptr-1.0.0/gptr/R/auth-oauth.R |only gptr-1.0.0/gptr/R/auth-redact.R |only gptr-1.0.0/gptr/R/auth-secrets.R |only gptr-1.0.0/gptr/R/auth-store.R |only gptr-1.0.0/gptr/R/bridge-lang.R |only gptr-1.0.0/gptr/R/bridge-sh.R |only gptr-1.0.0/gptr/R/catalog-models.R |only gptr-1.0.0/gptr/R/ckpt-files.R |only gptr-1.0.0/gptr/R/ckpt-objects.R |only gptr-1.0.0/gptr/R/ckpt-rewind.R |only gptr-1.0.0/gptr/R/cli-claude.R |only gptr-1.0.0/gptr/R/cli-codex.R |only gptr-1.0.0/gptr/R/cli-common.R |only gptr-1.0.0/gptr/R/console-commands.R |only gptr-1.0.0/gptr/R/console-complete.R |only gptr-1.0.0/gptr/R/console-input.R |only gptr-1.0.0/gptr/R/console-interrupt.R |only gptr-1.0.0/gptr/R/console-jsonl.R |only gptr-1.0.0/gptr/R/console-render.R |only gptr-1.0.0/gptr/R/console-repl.R |only gptr-1.0.0/gptr/R/console-ui.R |only gptr-1.0.0/gptr/R/doc-blocks.R |only gptr-1.0.0/gptr/R/doc-export.R |only gptr-1.0.0/gptr/R/doc-formats.R |only gptr-1.0.0/gptr/R/doc-io.R |only gptr-1.0.0/gptr/R/doc-knitr.R |only gptr-1.0.0/gptr/R/doc-locate.R |only gptr-1.0.0/gptr/R/doc-replay.R |only gptr-1.0.0/gptr/R/env-describe.R |only gptr-1.0.0/gptr/R/env-history.R |only gptr-1.0.0/gptr/R/env-probe.R |only gptr-1.0.0/gptr/R/env-snapshot.R |only gptr-1.0.0/gptr/R/eval-core.R |only gptr-1.0.0/gptr/R/eval-format.R |only gptr-1.0.0/gptr/R/eval-guard.R |only gptr-1.0.0/gptr/R/eval-plots.R |only gptr-1.0.0/gptr/R/ext-api.R |only gptr-1.0.0/gptr/R/ext-builtins.R |only gptr-1.0.0/gptr/R/ext-check.R |only gptr-1.0.0/gptr/R/ext-events.R |only gptr-1.0.0/gptr/R/ext-load.R |only gptr-1.0.0/gptr/R/ext-plugins.R |only gptr-1.0.0/gptr/R/ext-registry.R |only gptr-1.0.0/gptr/R/ext-specs.R |only gptr-1.0.0/gptr/R/gptr-capture.R |only gptr-1.0.0/gptr/R/gptr-child.R |only gptr-1.0.0/gptr/R/gptr-coach.R |only gptr-1.0.0/gptr/R/gptr-config.R |only gptr-1.0.0/gptr/R/gptr-gateway.R |only gptr-1.0.0/gptr/R/gptr-sdk.R |only gptr-1.0.0/gptr/R/gptr-tailor.R |only gptr-1.0.0/gptr/R/http-reactor.R |only gptr-1.0.0/gptr/R/http-request.R |only gptr-1.0.0/gptr/R/http-retry.R |only gptr-1.0.0/gptr/R/http-sse.R |only gptr-1.0.0/gptr/R/json-encode.R |only gptr-1.0.0/gptr/R/json-partial.R |only gptr-1.0.0/gptr/R/json-schema.R |only gptr-1.0.0/gptr/R/mcp-client.R |only gptr-1.0.0/gptr/R/mcp-config.R |only gptr-1.0.0/gptr/R/mcp-namespace.R |only gptr-1.0.0/gptr/R/mcp-server.R |only gptr-1.0.0/gptr/R/perm-classify.R |only gptr-1.0.0/gptr/R/perm-gate.R |only gptr-1.0.0/gptr/R/perm-plan.R |only gptr-1.0.0/gptr/R/perm-rules.R |only gptr-1.0.0/gptr/R/proc-rscript.R |only gptr-1.0.0/gptr/R/proc-spawn.R |only gptr-1.0.0/gptr/R/proc-supervise.R |only gptr-1.0.0/gptr/R/prompt-cache.R |only gptr-1.0.0/gptr/R/prompt-compact.R |only gptr-1.0.0/gptr/R/prompt-context.R |only gptr-1.0.0/gptr/R/prompt-sections.R |only gptr-1.0.0/gptr/R/prompt-text.R |only gptr-1.0.0/gptr/R/provider-anthropic.R |only gptr-1.0.0/gptr/R/provider-bedrock.R |only gptr-1.0.0/gptr/R/provider-events.R |only gptr-1.0.0/gptr/R/provider-fake.R |only gptr-1.0.0/gptr/R/provider-google.R |only gptr-1.0.0/gptr/R/provider-message.R |only gptr-1.0.0/gptr/R/provider-openai-completions.R |only gptr-1.0.0/gptr/R/provider-openai-responses.R |only gptr-1.0.0/gptr/R/provider-registry.R |only gptr-1.0.0/gptr/R/provider-transform.R |only gptr-1.0.0/gptr/R/provider-usage.R |only gptr-1.0.0/gptr/R/s1-cache.R |only gptr-1.0.0/gptr/R/s1-client.R |only gptr-1.0.0/gptr/R/s1-emulate.R |only gptr-1.0.0/gptr/R/s1-ollama.R |only gptr-1.0.0/gptr/R/s1-route.R |only gptr-1.0.0/gptr/R/s1-types.R |only gptr-1.0.0/gptr/R/session-budget.R |only gptr-1.0.0/gptr/R/session-live.R |only gptr-1.0.0/gptr/R/session-object.R |only gptr-1.0.0/gptr/R/session-store.R |only gptr-1.0.0/gptr/R/skill-discover.R |only gptr-1.0.0/gptr/R/skill-templates.R |only gptr-1.0.0/gptr/R/subagent-backends.R |only gptr-1.0.0/gptr/R/subagent-defs.R |only gptr-1.0.0/gptr/R/subagent-team.R |only gptr-1.0.0/gptr/R/subagent-worker.R |only gptr-1.0.0/gptr/R/tool-ask.R |only gptr-1.0.0/gptr/R/tool-diff.R |only gptr-1.0.0/gptr/R/tool-edit.R |only gptr-1.0.0/gptr/R/tool-namespace.R |only gptr-1.0.0/gptr/R/tool-r.R |only gptr-1.0.0/gptr/R/tool-read.R |only gptr-1.0.0/gptr/R/tool-search.R |only gptr-1.0.0/gptr/R/tool-walk.R |only gptr-1.0.0/gptr/R/tool-write.R |only gptr-1.0.0/gptr/R/utils-conditions.R |only gptr-1.0.0/gptr/R/utils-encoding.R |only gptr-1.0.0/gptr/R/utils-hash.R |only gptr-1.0.0/gptr/R/utils-options.R |only gptr-1.0.0/gptr/R/utils-paths.R |only gptr-1.0.0/gptr/R/utils-size.R |only gptr-1.0.0/gptr/R/utils-text.R |only gptr-1.0.0/gptr/R/utils-tokens.R |only gptr-1.0.0/gptr/R/zzz.R |only gptr-1.0.0/gptr/README.md | 327 ++++-- gptr-1.0.0/gptr/build |only gptr-1.0.0/gptr/inst |only gptr-1.0.0/gptr/man/as.data.frame.gptr_session_summary.Rd |only gptr-1.0.0/gptr/man/format.gptr_risk.Rd |only gptr-1.0.0/gptr/man/format.gptr_session.Rd |only gptr-1.0.0/gptr/man/gptr-background.Rd |only gptr-1.0.0/gptr/man/gptr_adapter.Rd |only gptr-1.0.0/gptr/man/gptr_agent.Rd |only gptr-1.0.0/gptr/man/gptr_api.Rd |only gptr-1.0.0/gptr/man/gptr_artifacts.Rd |only gptr-1.0.0/gptr/man/gptr_backend.Rd |only gptr-1.0.0/gptr/man/gptr_blocks.Rd |only gptr-1.0.0/gptr/man/gptr_cache.Rd |only gptr-1.0.0/gptr/man/gptr_cancel.Rd |only gptr-1.0.0/gptr/man/gptr_check.Rd |only gptr-1.0.0/gptr/man/gptr_coach.Rd |only gptr-1.0.0/gptr/man/gptr_command.Rd |only gptr-1.0.0/gptr/man/gptr_config.Rd |only gptr-1.0.0/gptr/man/gptr_context_block.Rd |only gptr-1.0.0/gptr/man/gptr_describe.Rd |only gptr-1.0.0/gptr/man/gptr_doc.Rd |only gptr-1.0.0/gptr/man/gptr_egress.Rd |only gptr-1.0.0/gptr/man/gptr_env.Rd |only gptr-1.0.0/gptr/man/gptr_export.Rd |only gptr-1.0.0/gptr/man/gptr_fake_provider.Rd |only gptr-1.0.0/gptr/man/gptr_fork.Rd |only gptr-1.0.0/gptr/man/gptr_hook.Rd |only gptr-1.0.0/gptr/man/gptr_init.Rd |only gptr-1.0.0/gptr/man/gptr_jobs.Rd |only gptr-1.0.0/gptr/man/gptr_login.Rd |only gptr-1.0.0/gptr/man/gptr_mcp.Rd |only gptr-1.0.0/gptr/man/gptr_mcp_add.Rd |only gptr-1.0.0/gptr/man/gptr_mcp_serve.Rd |only gptr-1.0.0/gptr/man/gptr_models.Rd |only gptr-1.0.0/gptr/man/gptr_on.Rd |only gptr-1.0.0/gptr/man/gptr_options.Rd |only gptr-1.0.0/gptr/man/gptr_parallel.Rd |only gptr-1.0.0/gptr/man/gptr_permissions.Rd |only gptr-1.0.0/gptr/man/gptr_plugins.Rd |only gptr-1.0.0/gptr/man/gptr_policy.Rd |only gptr-1.0.0/gptr/man/gptr_preimage.Rd |only gptr-1.0.0/gptr/man/gptr_prob.Rd |only gptr-1.0.0/gptr/man/gptr_prompt.Rd |only gptr-1.0.0/gptr/man/gptr_prompt_section.Rd |only gptr-1.0.0/gptr/man/gptr_provider.Rd |only gptr-1.0.0/gptr/man/gptr_providers.Rd |only gptr-1.0.0/gptr/man/gptr_redact.Rd |only gptr-1.0.0/gptr/man/gptr_register.Rd |only gptr-1.0.0/gptr/man/gptr_registry.Rd |only gptr-1.0.0/gptr/man/gptr_reload.Rd |only gptr-1.0.0/gptr/man/gptr_return.Rd |only gptr-1.0.0/gptr/man/gptr_rewind.Rd |only gptr-1.0.0/gptr/man/gptr_risk.Rd |only gptr-1.0.0/gptr/man/gptr_router.Rd |only gptr-1.0.0/gptr/man/gptr_scrub.Rd |only gptr-1.0.0/gptr/man/gptr_security.Rd |only gptr-1.0.0/gptr/man/gptr_sessions.Rd |only gptr-1.0.0/gptr/man/gptr_skills.Rd |only gptr-1.0.0/gptr/man/gptr_source.Rd |only gptr-1.0.0/gptr/man/gptr_spec.Rd |only gptr-1.0.0/gptr/man/gptr_steer.Rd |only gptr-1.0.0/gptr/man/gptr_step.Rd |only gptr-1.0.0/gptr/man/gptr_tailor.Rd |only gptr-1.0.0/gptr/man/gptr_tool.Rd |only gptr-1.0.0/gptr/man/gptr_tool_result.Rd |only gptr-1.0.0/gptr/man/gptr_trust.Rd |only gptr-1.0.0/gptr/man/gptr_usage.Rd |only gptr-1.0.0/gptr/man/gptr_wait.Rd |only gptr-1.0.0/gptr/man/peter.Rd |only gptr-1.0.0/gptr/man/print.gptr_session.Rd |only gptr-1.0.0/gptr/man/print.gptr_session_summary.Rd |only gptr-1.0.0/gptr/man/session-accessors.Rd |only gptr-1.0.0/gptr/man/str.gptr_session.Rd |only gptr-1.0.0/gptr/man/summary.gptr_session.Rd |only gptr-1.0.0/gptr/tests |only gptr-1.0.0/gptr/vignettes |only 215 files changed, 1200 insertions(+), 113 deletions(-)
Title: Three-Step Estimation for Latent Class Analysis
Description: Bias-adjusted three-step estimation of latent class models with
covariates and distal outcomes. The latent class measurement model is
estimated first, with 'multilevLCA' (Lyrvall et al., 2025)
<doi:10.1080/00273171.2025.2473935>, and held fixed; observations are then
classified; and the classes are related to covariates and distal outcomes
with the maximum likelihood correction of Vermunt (2010)
<doi:10.1093/pan/mpq025> and Bakk, Tekle and Vermunt (2013)
<doi:10.1177/0081175012470644>, or the correction of Bolck, Croon and
Hagenaars (2004) <doi:10.1093/pan/mph001>. Standard errors account for the
uncertainty of the measurement model (Bakk, Oberski and Vermunt, 2014)
<doi:10.1093/pan/mpu003>. Includes class enumeration, modal and
proportional class assignment, covariate formulas, Gaussian, Poisson,
binomial, and multinomial distal outcomes, the two-step estimator of Bakk
and Kuha (2018) <doi:10.1007/s11336-017-9592-7>, measurement models
applied to ne [...truncated...]
Author: Sam Lee [aut, cre, cph] ,
Jay Goodliffe [aut, cph]
Maintainer: Sam Lee <samlee@arizona.edu>
Diff between tseLCA versions 2.1.0 dated 2026-10-23 and 2.1.1 dated 2026-10-31
DESCRIPTION | 13 MD5 | 18 NEWS.md | 885 ++++++++++++++-------------- R/vcov.R | 22 inst/doc/tseLCA-workflow.Rmd | 3 inst/doc/tseLCA-workflow.html | 5 tests/testthat/fixtures/make_v1_reference.R | 8 tests/testthat/fixtures/v1_reference.rds |binary tests/testthat/test-distal-ml.R | 551 +++++++++-------- vignettes/tseLCA-workflow.Rmd | 3 10 files changed, 788 insertions(+), 720 deletions(-)
Title: Econometrics of Network Data
Description: Simulating and estimating peer effect models and network formation models. The class of peer effect models includes linear-in-means models (Lee, 2004; <doi:10.1111/j.1468-0262.2004.00558.x>), Tobit models (Xu and Lee, 2015; <doi:10.1016/j.jeconom.2015.05.004>), and discrete numerical data models (Houndetoungan, 2025; <doi:10.48550/arXiv.2405.17290>). The network formation models include pair-wise regressions with degree heterogeneity (Graham, 2017; <doi:10.3982/ECTA12679>) and exponential random graph models (Mele, 2017; <doi:10.3982/ECTA10400>).
Author: Aristide Houndetoungan [cre, aut]
Maintainer: Aristide Houndetoungan <ahoundetoungan@ecn.ulaval.ca>
Diff between CDatanet versions 2.2.2 dated 2025-11-09 and 2.2.3 dated 2026-10-31
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NEWS.md | 3 +++ R/cdnet.R | 2 +- build/partial.rdb |binary src/cdnet.cpp | 2 +- src/homophily.cpp | 27 +++++++++------------------ src/sartincomplet.cpp | 2 +- 8 files changed, 28 insertions(+), 34 deletions(-)
Title: Compositional Data Analysis
Description: Methods for analysis of compositional data including robust
methods (<doi:10.1007/978-3-319-96422-5>), imputation of missing values (<doi:10.1016/j.csda.2009.11.023>), methods to replace
rounded zeros (<doi:10.1080/02664763.2017.1410524>, <doi:10.1016/j.chemolab.2016.04.011>, <doi:10.1016/j.csda.2012.02.012>),
count zeros (<doi:10.1177/1471082X14535524>),
methods to deal with essential zeros (<doi:10.1080/02664763.2016.1182135>), (robust) outlier
detection for compositional data, (robust) principal component analysis for
compositional data, (robust) factor analysis for compositional data, (robust)
discriminant analysis for compositional data (Fisher rule), robust regression
with compositional predictors, functional data analysis (<doi:10.1016/j.csda.2015.07.007>) and p-splines (<doi:10.1016/j.csda.2015.07.007>),
contingency (<doi:10.1080/03610926.2013.824980>)
and compositional tables (<doi:10.1111/sjos.12326>, <doi: [...truncated...]
Author: Matthias Templ [aut, cre] ,
Karel Hron [aut] ,
Peter Filzmoser [aut] ,
Kamila Facevicova [ctb],
Petra Kynclova [ctb],
Jan Walach [ctb],
Veronika Pintar [ctb],
Jiajia Chen [ctb],
Dominika Miksova [ctb],
Bernhard Meindl [ctb],
Alessandra Menafoglio [ct [...truncated...]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between robCompositions versions 2.6.0 dated 2026-06-15 and 2.7.0 dated 2026-10-31
robCompositions-2.6.0/robCompositions/src/robCompositions.c |only robCompositions-2.7.0/robCompositions/DESCRIPTION | 8 robCompositions-2.7.0/robCompositions/MD5 | 47 - robCompositions-2.7.0/robCompositions/NAMESPACE | 1 robCompositions-2.7.0/robCompositions/NEWS | 44 + robCompositions-2.7.0/robCompositions/R/Transformations.R | 285 ++++--- robCompositions-2.7.0/robCompositions/R/aDist.R | 383 +++++++--- robCompositions-2.7.0/robCompositions/R/aDistDens.R |only robCompositions-2.7.0/robCompositions/R/ced.R | 66 + robCompositions-2.7.0/robCompositions/inst/doc/imputation.pdf |binary robCompositions-2.7.0/robCompositions/inst/doc/robCompositions-overview.Rnw | 10 robCompositions-2.7.0/robCompositions/inst/doc/robCompositions-overview.pdf |binary robCompositions-2.7.0/robCompositions/man/aDist.Rd | 174 +++- robCompositions-2.7.0/robCompositions/man/aDistDens.Rd |only robCompositions-2.7.0/robCompositions/man/ced.Rd | 57 + robCompositions-2.7.0/robCompositions/man/fcenLR.Rd | 83 +- robCompositions-2.7.0/robCompositions/man/fcenLRinv.Rd | 77 +- robCompositions-2.7.0/robCompositions/man/fcenLRp.Rd | 38 robCompositions-2.7.0/robCompositions/man/fcenLRu.Rd | 39 - robCompositions-2.7.0/robCompositions/man/trapzc.Rd | 37 robCompositions-2.7.0/robCompositions/src/robCompositions_init.c | 10 robCompositions-2.7.0/robCompositions/src/zeros.cpp | 1 robCompositions-2.7.0/robCompositions/tests/testthat/test_aDist.R |only robCompositions-2.7.0/robCompositions/tests/testthat/test_fcenLR.R |only robCompositions-2.7.0/robCompositions/vignettes/refPCS.bib | 5 robCompositions-2.7.0/robCompositions/vignettes/refPCSn.bib | 5 robCompositions-2.7.0/robCompositions/vignettes/robCompositions-overview.Rnw | 10 27 files changed, 981 insertions(+), 399 deletions(-)
More information about robCompositions at CRAN
Permanent link
Title: High-Dimensional Cure Models
Description: Provides functions for fitting various penalized parametric and semi-parametric mixture cure models with different penalty functions, testing for a significant cure fraction, and testing for sufficient follow-up as described in Fu et al (2022)<doi:10.1002/sim.9513> and Archer et al (2024)<doi:10.1186/s13045-024-01553-6>. False discovery rate controlled variable selection is provided using model-X knock-offs.
Author: Han Fu [aut],
Kellie J. Archer [aut, cre] ,
Tung Lam Nguyen [rev] ,
Panagiotis Papastamoulis [rev]
Maintainer: Kellie J. Archer <archer.43@osu.edu>
Diff between hdcuremodels versions 0.0.8 dated 2026-05-18 and 0.0.9 dated 2026-10-31
DESCRIPTION | 15 +-- MD5 | 24 ++--- R/generate_cure_data.R | 6 - R/nonzerocure_test.R | 14 ++- R/zzz.R | 74 +++++++++++++--- README.md | 17 +-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/hdcuremodels.html | 137 ++++++------------------------- man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/hdcuremodels-package.Rd | 4 13 files changed, 131 insertions(+), 160 deletions(-)
Title: An Implementation of the PREVENT and Pooled Cohort Equations
Description: Implements the American Heart Association Predicting
Risk of cardiovascular disease EVENTs (PREVENT) equations from Khan
SS, Matsushita K, Sang Y, and colleagues (2023)
<doi:10.1161/CIRCULATIONAHA.123.067626>, with optional comparison
with their de facto predecessor, the Pooled Cohort Equations from the
American Heart Association and American College of Cardiology (2013)
<doi:10.1161/01.cir.0000437741.48606.98> and the revision to the Pooled
Cohort Equations from Yadlowsky and colleagues (2018)
<doi:10.7326/M17-3011>.
Author: Martin Mayer [aut, cre, cph]
Maintainer: Martin Mayer <mmayer@ebsco.com>
Diff between preventr versions 0.12.1 dated 2026-10-17 and 0.12.2 dated 2026-10-31
DESCRIPTION | 8 MD5 | 22 NEWS.md | 309 +- R/estimate_risk.R | 45 R/helpers.R | 38 R/sysdata.rda |binary README.md | 6 inst/doc/using-data-frame.html | 3406 ++++++++++++++++++--------------- man/estimate_risk.Rd | 45 tests/testthat/_snaps/estimate_risk.md | 28 tests/testthat/test-estimate_risk.R | 436 +++- tests/testthat/test-helpers.R | 12 12 files changed, 2492 insertions(+), 1863 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is 'parallel::makeCluster(type = "RPSOCK")', which is backward compatible with 'parallel::makeCluster()' while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph] ,
Mike Cheng [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.48.0 dated 2026-06-29 and 1.50.0 dated 2026-10-31
parallelly-1.48.0/parallelly/inst/test-data/cgroups1 |only parallelly-1.48.0/parallelly/inst/test-data/cgroups2 |only parallelly-1.48.0/parallelly/inst/test-data/mixed-cgroups |only parallelly-1.48.0/parallelly/inst/test-data/no-cgroups |only parallelly-1.50.0/parallelly/DESCRIPTION | 10 parallelly-1.50.0/parallelly/MD5 | 199 ++-- parallelly-1.50.0/parallelly/NAMESPACE | 36 parallelly-1.50.0/parallelly/NEWS.md | 185 ++++ parallelly-1.50.0/parallelly/R/000.import.R | 2 parallelly-1.50.0/parallelly/R/010.cli.R | 2 parallelly-1.50.0/parallelly/R/RichSOCKcluster.R | 3 parallelly-1.50.0/parallelly/R/as.cluster.R | 4 parallelly-1.50.0/parallelly/R/availableCores.R | 370 +++++++- parallelly-1.50.0/parallelly/R/availableWorkers.R | 115 ++ parallelly-1.50.0/parallelly/R/cgroups.R | 176 +++- parallelly-1.50.0/parallelly/R/isNodeAlive.R | 66 - parallelly-1.50.0/parallelly/R/killNode.R | 88 -- parallelly-1.50.0/parallelly/R/launchNodePSOCK.R | 8 parallelly-1.50.0/parallelly/R/makeClusterPSOCK.R | 70 + parallelly-1.50.0/parallelly/R/makeClusterSequential.R | 2 parallelly-1.50.0/parallelly/R/makeNodePSOCK.R | 73 + parallelly-1.50.0/parallelly/R/options.R | 21 parallelly-1.50.0/parallelly/R/ports.R | 16 parallelly-1.50.0/parallelly/R/stealth_sample.R | 2 parallelly-1.50.0/parallelly/R/supportsMulticore.R | 3 parallelly-1.50.0/parallelly/R/utils,cluster.R | 185 ++++ parallelly-1.50.0/parallelly/R/utils.R | 60 + parallelly-1.50.0/parallelly/R/workRPSOCK.R | 19 parallelly-1.50.0/parallelly/build/vignette.rds |binary parallelly-1.50.0/parallelly/inst/doc/parallelly-01-intro.html | 2 parallelly-1.50.0/parallelly/inst/doc/parallelly-01-intro.md | 2 parallelly-1.50.0/parallelly/inst/doc/parallelly-10-local-workers.html | 8 parallelly-1.50.0/parallelly/inst/doc/parallelly-10-local-workers.md | 8 parallelly-1.50.0/parallelly/inst/doc/parallelly-12-remote-workers.html | 36 parallelly-1.50.0/parallelly/inst/doc/parallelly-12-remote-workers.md | 36 parallelly-1.50.0/parallelly/inst/doc/parallelly-17-hpc-workers.html | 432 +++++++++- parallelly-1.50.0/parallelly/inst/doc/parallelly-17-hpc-workers.md | 273 ++++++ parallelly-1.50.0/parallelly/inst/doc/parallelly-21-container-workers.html | 30 parallelly-1.50.0/parallelly/inst/doc/parallelly-21-container-workers.md | 30 parallelly-1.50.0/parallelly/inst/doc/parallelly-22-wine-workers.html | 16 parallelly-1.50.0/parallelly/inst/doc/parallelly-22-wine-workers.md | 16 parallelly-1.50.0/parallelly/inst/doc/parallelly-25-sandbox-workers.html | 4 parallelly-1.50.0/parallelly/inst/doc/parallelly-25-sandbox-workers.md | 4 parallelly-1.50.0/parallelly/inst/test-data/cgroups |only parallelly-1.50.0/parallelly/inst/test-data/htcondor |only parallelly-1.50.0/parallelly/inst/test-data/sge |only parallelly-1.50.0/parallelly/inst/test-data/slurm |only parallelly-1.50.0/parallelly/inst/testme/_epilogue/999.detritus.R | 2 parallelly-1.50.0/parallelly/inst/testme/test-availableCores.R | 414 +++++++++ parallelly-1.50.0/parallelly/inst/testme/test-availableWorkers.R | 259 +++++ parallelly-1.50.0/parallelly/inst/testme/test-cgroups.R | 8 parallelly-1.50.0/parallelly/inst/testme/test-cli.R | 22 parallelly-1.50.0/parallelly/inst/testme/test-isNodeAlive.R | 20 parallelly-1.50.0/parallelly/inst/testme/test-killNode.R | 25 parallelly-1.50.0/parallelly/inst/testme/test-makeClusterPSOCK.R | 42 parallelly-1.50.0/parallelly/inst/testme/test-makeNodePSOCK.R | 151 +++ parallelly-1.50.0/parallelly/inst/testme/test-serializedSize.R | 8 parallelly-1.50.0/parallelly/inst/testme/test-utils.R | 20 parallelly-1.50.0/parallelly/inst/testme/test-workRPSOCK.R |only parallelly-1.50.0/parallelly/man/availableCores.Rd | 63 + parallelly-1.50.0/parallelly/man/availableWorkers.Rd | 44 - parallelly-1.50.0/parallelly/man/find_rshcmd.Rd | 6 parallelly-1.50.0/parallelly/man/freePort.Rd | 6 parallelly-1.50.0/parallelly/man/isConnectionValid.Rd | 8 parallelly-1.50.0/parallelly/man/isNodeAlive.Rd | 2 parallelly-1.50.0/parallelly/man/killNode.Rd | 2 parallelly-1.50.0/parallelly/man/makeClusterPSOCK.Rd | 68 + parallelly-1.50.0/parallelly/man/makeClusterSequential.Rd | 2 parallelly-1.50.0/parallelly/man/supportsMulticore.Rd | 2 parallelly-1.50.0/parallelly/man/workRPSOCK.Rd | 2 parallelly-1.50.0/parallelly/man/zzz-parallelly.options.Rd | 15 parallelly-1.50.0/parallelly/src/calc-serialized-size.c | 10 parallelly-1.50.0/parallelly/tests/test-workRPSOCK.R |only parallelly-1.50.0/parallelly/vignettes/parallelly-01-intro.md | 2 parallelly-1.50.0/parallelly/vignettes/parallelly-10-local-workers.md | 8 parallelly-1.50.0/parallelly/vignettes/parallelly-12-remote-workers.md | 36 parallelly-1.50.0/parallelly/vignettes/parallelly-17-hpc-workers.md | 273 ++++++ parallelly-1.50.0/parallelly/vignettes/parallelly-21-container-workers.md | 30 parallelly-1.50.0/parallelly/vignettes/parallelly-22-wine-workers.md | 16 parallelly-1.50.0/parallelly/vignettes/parallelly-25-sandbox-workers.md | 4 80 files changed, 3546 insertions(+), 636 deletions(-)
Title: A Tidyverse-Native Client for the 'BrAPI' v2 (Breeding API)
Specification
Description: Provides pipe-friendly, stateless read access to the Breeding
API ('BrAPI') v2.1 specification, an open community standard for plant
breeding data interchange maintained by the BrAPI project
<https://brapi.org>. Wraps 32 of the 37 'BrAPI' v2.1 entities across all
four modules, Core, Germplasm, Phenotyping, and Genotyping, covering 49
of the specification's 138 retrieval ('GET' and search) endpoints and
returning tidy tibbles ready for analysis. Write and update endpoints
are out of scope by design. Features include automatic pagination, async
search handling, response caching, parallel batch fetching, and
convenience functions for genomic selection workflows (e.g. dosage
matrix extraction). Designed for plant breeders and bioinformaticians
who need programmatic access to plant breeding databases that
implement the 'BrAPI' v2 specification.
Author: Joash Joshua Ayo [aut, cre, cph] ,
David Waring [rev] for rOpenSci,
see <https://github.com/ropensci/software-review/issues/792>),
Jenna Hershberger [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/792>)
Maintainer: Joash Joshua Ayo <joashjoshua789@gmail.com>
Diff between brapiR2 versions 0.2.0 dated 2026-10-05 and 0.2.1 dated 2026-10-31
DESCRIPTION | 10 MD5 | 101 +- NAMESPACE | 23 NEWS.md | 753 +++++++++----- R/auth.R | 326 +++--- R/brapiR2-package.R | 190 +-- R/cache.R | 332 +++--- R/connection.R | 362 +++---- R/core.R | 845 ++++++++-------- R/coverage.R | 176 +-- R/genome_maps.R | 397 ++++--- R/genotyping.R | 1357 ++++++++++++++------------- R/germplasm.R | 1007 ++++++++++---------- R/phenotyping.R | 1051 ++++++++++---------- R/request.R | 1082 ++++++++++++--------- R/utils.R | 459 +++++---- README.md | 473 ++++----- inst/WORDLIST | 9 inst/doc/brapiR2.R | 14 inst/doc/brapiR2.Rmd | 924 +++++++++--------- inst/doc/brapiR2.html | 93 - man/brapi_allele_matrix.Rd | 5 man/brapi_cache_clear.Rd | 6 man/brapi_cache_enable.Rd | 10 man/brapi_coverage.Rd | 6 man/brapi_endpoints.Rd | 4 man/brapi_fetch_parallel.Rd | 6 man/brapi_germplasm_pedigree.Rd | 4 man/brapi_germplasm_progeny.Rd | 4 man/brapi_get.Rd | 2 man/brapi_get_dosage_matrix.Rd | 26 man/brapi_get_marker_map.Rd | 11 man/brapi_login.Rd | 8 man/brapi_login_oauth2.Rd | 46 man/brapi_pedigree.Rd | 9 man/brapi_ping.Rd | 13 man/brapi_post_search.Rd | 3 man/brapi_search_marker_positions.Rd | 5 man/brapi_server_info.Rd | 4 man/brapi_study_data.Rd | 35 tests/testthat/helper-live-server.R |only tests/testthat/test-auth-mocked.R | 128 ++ tests/testthat/test-cache-integration.R | 17 tests/testthat/test-cache-mocked.R | 212 +++- tests/testthat/test-genotyping-mocked.R | 339 ++++++ tests/testthat/test-germplasm-mocked.R | 67 + tests/testthat/test-integration.R | 72 - tests/testthat/test-live-server-guard.R |only tests/testthat/test-phenotyping-mocked.R | 471 +++++---- tests/testthat/test-request-mocked.R | 1457 +++++++++++++++++++---------- tests/testthat/test-thin-wrappers-mocked.R | 1089 ++++++++++++--------- tests/testthat/test-validation-mocked.R |only vignettes/brapiR2.Rmd | 924 +++++++++--------- 53 files changed, 8571 insertions(+), 6396 deletions(-)
Title: Bivariate Within- and Between-Cluster Correlations
Description: Separates supplied variables into within- and
between-cluster components and calculates bivariate correlations for
each level separately. For Pearson correlations, the centered-score
decomposition corresponds to commonly used between- and within-cluster
correlations reviewed by Tu et al. (2025) <doi:10.1002/sim.10326>.
The package's descriptive Spearman option is distinct from the clustered
rank parameters introduced in that paper. The package is also
motivated by the distinction between within- and between-person
variation described by Curran and Bauer (2011)
<doi:10.1146/annurev.psych.093008.100356> and by Hamaker (2024)
<doi:10.1080/00273171.2022.2155930>.
The package is intended for longitudinal or otherwise clustered data
where researchers need transparent correlation matrices before fitting
more complex multilevel models.
Author: Pascal Kueng [aut, cre, cph]
Maintainer: Pascal Kueng <pascal.kueng@psychologie.uzh.ch>
Diff between wbCorr versions 0.3.2 dated 2026-07-23 and 0.4.0 dated 2026-10-31
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Title: Results Tables to Bridge the Rift Between Epidemiologists and
Their Data
Description: Presentation-ready results tables for epidemiologists in an
automated, reproducible fashion. The user provides the final analytical
dataset and specifies the design of the table, with rows and/or columns
defined by exposure(s), effect modifier(s), and estimands as desired,
allowing to show descriptors and inferential estimates in one table --
bridging the rift between epidemiologists and their data, one table at a
time. See Rothman (2017) <doi:10.1007/s10654-017-0314-3>.
Author: Konrad H. Stopsack [aut, cre, cph]
Maintainer: Konrad H. Stopsack <stopsack@post.harvard.edu>
Diff between rifttable versions 0.7.2 dated 2026-01-18 and 0.7.3 dated 2026-10-31
rifttable-0.7.2/rifttable/R/input_checks.R |only rifttable-0.7.2/rifttable/R/utils_trim.R |only rifttable-0.7.3/rifttable/DESCRIPTION | 8 rifttable-0.7.3/rifttable/MD5 | 75 ++-- rifttable-0.7.3/rifttable/NAMESPACE | 6 rifttable-0.7.3/rifttable/NEWS.md | 25 + rifttable-0.7.3/rifttable/R/check_event_time.R |only rifttable-0.7.3/rifttable/R/check_outcome.R |only rifttable-0.7.3/rifttable/R/estimate_event_time.R | 26 + rifttable-0.7.3/rifttable/R/estimate_survdiff.R | 24 - rifttable-0.7.3/rifttable/R/fill_cells.R | 9 rifttable-0.7.3/rifttable/R/find_argument.R |only rifttable-0.7.3/rifttable/R/find_rounding_digits.R |only rifttable-0.7.3/rifttable/R/format_round.R |only rifttable-0.7.3/rifttable/R/rifttable.R | 77 +++- rifttable-0.7.3/rifttable/R/survdiff_ci.R | 12 rifttable-0.7.3/rifttable/R/table1_design.R | 17 rifttable-0.7.3/rifttable/README.md | 9 rifttable-0.7.3/rifttable/build/partial.rdb |binary rifttable-0.7.3/rifttable/build/vignette.rds |binary rifttable-0.7.3/rifttable/inst/doc/estimators_continuous.R | 2 rifttable-0.7.3/rifttable/inst/doc/estimators_continuous.Rmd | 2 rifttable-0.7.3/rifttable/inst/doc/estimators_continuous.html | 4 rifttable-0.7.3/rifttable/inst/doc/estimators_survival.R | 4 rifttable-0.7.3/rifttable/inst/doc/estimators_survival.Rmd | 16 rifttable-0.7.3/rifttable/inst/doc/estimators_survival.html | 38 +- rifttable-0.7.3/rifttable/inst/doc/faq.R | 16 rifttable-0.7.3/rifttable/inst/doc/faq.Rmd | 113 +++--- rifttable-0.7.3/rifttable/inst/doc/faq.html | 40 +- rifttable-0.7.3/rifttable/man/rifttable.Rd | 27 + rifttable-0.7.3/rifttable/man/survdiff_ci.Rd | 2 rifttable-0.7.3/rifttable/tests/testthat/test-competing.R | 6 rifttable-0.7.3/rifttable/tests/testthat/test-estimators-survival.R | 179 +++++++++- rifttable-0.7.3/rifttable/tests/testthat/test-input-checks.R | 63 +++ rifttable-0.7.3/rifttable/tests/testthat/test-joint_model.R | 9 rifttable-0.7.3/rifttable/tests/testthat/test-layout-cols.R | 111 ++++++ rifttable-0.7.3/rifttable/tests/testthat/test-rt_gt.R | 9 rifttable-0.7.3/rifttable/tests/testthat/test-table1_design.R | 69 +++ rifttable-0.7.3/rifttable/tests/testthat/test-time2.R | 6 rifttable-0.7.3/rifttable/vignettes/estimators_continuous.Rmd | 2 rifttable-0.7.3/rifttable/vignettes/estimators_survival.Rmd | 16 rifttable-0.7.3/rifttable/vignettes/faq.Rmd | 113 +++--- 42 files changed, 865 insertions(+), 270 deletions(-)
Title: OIDC Authentication and OAuth Authorization for 'shiny'
Applications
Description: Provides a simple, configurable framework for 'OpenID Connect'
(OIDC) authentication and 'OAuth 2.0' authorization in 'shiny' applications
using 'S7' classes. Defines providers, clients, and tokens, as well
as various supporting functions and a 'shiny' module. Features include
cross-site request forgery (CSRF) protection, state encryption,
'Proof Key for Code Exchange' (PKCE) handling, validation of OIDC identity
tokens (nonces, signatures, claims), automatic user info retrieval for OIDC
and supported 'OAuth' providers, asynchronous flows,
and hooks for audit logging.
Author: Luka Koning [aut, cre, cph]
Maintainer: Luka Koning <koningluka@gmail.com>
Diff between shinyOAuth versions 0.6.1 dated 2026-09-18 and 0.7.0 dated 2026-10-31
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shinyOAuth-0.7.0/shinyOAuth/R/connection_store.R | 21 shinyOAuth-0.7.0/shinyOAuth/R/connection_targets.R |only shinyOAuth-0.7.0/shinyOAuth/R/custom_cache.R | 131 shinyOAuth-0.7.0/shinyOAuth/R/errors__constructors.R | 26 shinyOAuth-0.7.0/shinyOAuth/R/methods__client_bearer_req.R | 2251 +- shinyOAuth-0.7.0/shinyOAuth/R/methods__connection.R | 617 shinyOAuth-0.7.0/shinyOAuth/R/methods__login.R | 278 shinyOAuth-0.7.0/shinyOAuth/R/methods__print.R | 2 shinyOAuth-0.7.0/shinyOAuth/R/methods__token.R | 345 shinyOAuth-0.7.0/shinyOAuth/R/methods__userinfo.R | 2687 +- shinyOAuth-0.7.0/shinyOAuth/R/mtls_registration.R | 1815 - shinyOAuth-0.7.0/shinyOAuth/R/oauth_connections.R | 3077 +- shinyOAuth-0.7.0/shinyOAuth/R/oauth_connections_server.R | 623 shinyOAuth-0.7.0/shinyOAuth/R/oauth_connections_ui.R | 129 shinyOAuth-0.7.0/shinyOAuth/R/oauth_form_post_ui.R | 197 shinyOAuth-0.7.0/shinyOAuth/R/oauth_module_server.R |11125 +++++----- shinyOAuth-0.7.0/shinyOAuth/R/oauth_token_target.R |only 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|only shinyOAuth-0.7.0/shinyOAuth/R/utils__connection_credentials.R | 75 shinyOAuth-0.7.0/shinyOAuth/R/utils__crypt_state.R | 21 shinyOAuth-0.7.0/shinyOAuth/R/utils__deployment.R |only shinyOAuth-0.7.0/shinyOAuth/R/utils__diagnostic_text.R | 3 shinyOAuth-0.7.0/shinyOAuth/R/utils__dpop.R | 190 shinyOAuth-0.7.0/shinyOAuth/R/utils__endpoint_auth.R | 75 shinyOAuth-0.7.0/shinyOAuth/R/utils__hmac_binding.R |only shinyOAuth-0.7.0/shinyOAuth/R/utils__http_headers.R |only shinyOAuth-0.7.0/shinyOAuth/R/utils__http_payloads.R | 977 shinyOAuth-0.7.0/shinyOAuth/R/utils__http_requests.R | 60 shinyOAuth-0.7.0/shinyOAuth/R/utils__jwks_fetch.R | 79 shinyOAuth-0.7.0/shinyOAuth/R/utils__jwks_keys.R | 53 shinyOAuth-0.7.0/shinyOAuth/R/utils__jwt_id_token.R | 23 shinyOAuth-0.7.0/shinyOAuth/R/utils__jwt_jarm.R | 44 shinyOAuth-0.7.0/shinyOAuth/R/utils__jwt_jwe.R | 67 shinyOAuth-0.7.0/shinyOAuth/R/utils__jwt_parse.R | 125 shinyOAuth-0.7.0/shinyOAuth/R/utils__jwt_signing.R | 74 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shinyOAuth-0.7.0/shinyOAuth/tests/testthat/fixtures/mtls/target-server.py |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/fixtures/tag-0.6.1-constructors.json |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/helper-connection-manager.R | 234 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/helper-connection-ordinary-oidc.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/helper-form-post-candidates.R | 19 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/helper-login.R | 8 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/helper-mtls.R | 13 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-async-dependencies.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-async-otel-cleanup.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-async-serialization.R | 271 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-audit-all-events.R | 12 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-audit-shiny-context.R | 9 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-audit-state-failures.R | 2 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-auth-operation-races.R | 8 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-authorization-context.R | 3 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-automatic-session-revocation.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-base64url-helpers.R | 17 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-browser-cookie-ack.R | 55 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-browser-denied-login.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-browser-strict-entry.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-browser-token-fixation.R | 2 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-build-hygiene.R | 115 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-callback-fixed-query.R | 4 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-check-oauth21.R | 2341 +- shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-claims-numeric-precision.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-claims-parameter.R | 48 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shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-introspection-before-userinfo.R | 2 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-issuer-empty-query.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-jarm-response.R | 9633 ++++---- shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-jose-header-fields.R | 6 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-json-literal-input.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-json-string-fidelity.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-jwe-process-isolation.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-jwks-cache-signature.R | 2 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-jwks-cache-tls-policy.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-jwks-duck-cache.R | 2 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-jwks-host-allow-only.R | 84 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-jwt-auth-time.R | 9 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-jwt-duplicate-members.R | 30 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shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-retention-browser-startup.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-rs384.R | 6 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-rsa-algorithm-binding.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-shiny-request-uri.R | 53 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-signing-key-strength.R | 2 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-smart-broader-grant-replacement.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-smart-launch.R | 74 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-smart-lifecycle-budget.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-smart-scope-index.R |only shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-smart-tls-assessment.R | 4 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-smart-tls.R | 229 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-softeners.R | 30 shinyOAuth-0.7.0/shinyOAuth/tests/testthat/test-state-envelope-roundtrip.R | 39 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Title: Access 'Hugging Face' Models and Datasets
Description: Access models and datasets hosted on the 'Hugging Face' Hub
through its Inference Application Programming Interface (API). Run text
classification, embeddings, chat, translation, image, audio, and other
tasks from tidy 'R' workflows without installing 'Python' by default.
Results are returned as data frames or simple 'R' objects so they can be
composed with 'dplyr', 'tidyr', and related tooling. Helpers also support
Hub search, file download, provider discovery, and guarded uploads for
authenticated workflows. Optional local embeddings and text classification
use 'Python' through 'reticulate'.
Author: Alex Farach [aut, cre, cph],
Sam Terfa [aut, cph],
Jack Penzer [aut, cph]
Maintainer: Alex Farach <alexfarach@gmail.com>
Diff between huggingfaceR versions 2.3.0 dated 2026-09-18 and 2.4.0 dated 2026-10-31
DESCRIPTION | 16 - MD5 | 39 ++- NEWS.md | 51 +++++ R/batch.R | 20 ++ R/classify-batch.R | 326 +++++++++++++++++---------------- R/datasets_api.R | 80 ++++---- R/embeddings-batch.R | 191 +++++++++++-------- R/embeddings.R | 152 +++++++++++---- R/hub.R | 76 +++++-- R/tidymodels.R | 14 - R/tidytext.R | 14 - man/hf_embed_batch.Rd | 7 man/hf_nearest_neighbors.Rd | 3 man/hf_similarity.Rd | 7 tests/testthat/helper.R | 25 ++ tests/testthat/test-classify-batch.R | 71 +++++++ tests/testthat/test-dataset-rows.R | 71 +++++++ tests/testthat/test-embeddings-batch.R | 130 +++++++++++++ tests/testthat/test-embeddings.R | 98 +++++++++ tests/testthat/test-hub.R | 117 +++++++++++ tests/testthat/test-tidymodels.R |only 21 files changed, 1127 insertions(+), 381 deletions(-)
Title: Reproducible Data Capsules with Provenance and Fallback
Description: For analyzing published and unpublished tables, from open-data
portals and statistical agencies to a researcher's own data, so that a
result can be traced to the exact data behind it and checked again
afterwards. A 'capsule' records where each source came from, its Secure
Hash Algorithm 256 ('SHA-256') hash, the schema it should have and an
archived copy in the Internet Archive 'Wayback Machine'
('web.archive.org'); sources are found through the Comprehensive
Knowledge Archive Network ('CKAN', 'ckan.org'). Run again, a capsule
says whether each source still matches and, if it does not, how its
distribution moved (Kolmogorov-Smirnov, chi-square, population stability
index and 'Benford' first-digit screens), and when a source cannot be
reached it runs on schema-driven synthetic data that is marked as such.
Capsules can be signed with keyed hashes ('HMAC-SHA-256', RFC 2104) or
with the post-quantum signature standards 'ML-DSA' (FIPS 204), 'SLH-DSA'
(FIPS 205) and 'XMSS' (RFC 8391), implem [...truncated...]
Author: Vansh Singh Ruhela [aut, cre]
Maintainer: Vansh Singh Ruhela <vsruhela@proton.me>
Diff between rmoriebricklayer versions 1.0.3 dated 2026-10-30 and 1.0.4 dated 2026-10-31
rmoriebricklayer-1.0.3/rmoriebricklayer/man/rmbl-data.Rd |only rmoriebricklayer-1.0.3/rmoriebricklayer/man/rmbl-output.Rd |only rmoriebricklayer-1.0.3/rmoriebricklayer/man/rmbl-seal.Rd |only rmoriebricklayer-1.0.3/rmoriebricklayer/man/rmbl-stats.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/DESCRIPTION | 6 rmoriebricklayer-1.0.4/rmoriebricklayer/MD5 | 368 +++++++++- rmoriebricklayer-1.0.4/rmoriebricklayer/NEWS.md | 4 rmoriebricklayer-1.0.4/rmoriebricklayer/README.md | 2 rmoriebricklayer-1.0.4/rmoriebricklayer/inst/doc/applied-analyses.html | 6 rmoriebricklayer-1.0.4/rmoriebricklayer/inst/doc/capsules-and-provenance.html | 26 rmoriebricklayer-1.0.4/rmoriebricklayer/inst/doc/describing-data-and-tables.html | 2 rmoriebricklayer-1.0.4/rmoriebricklayer/inst/doc/integrity-and-cryptography.html | 4 rmoriebricklayer-1.0.4/rmoriebricklayer/man/admits.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/adp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/adpcnts.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/agentbndl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/agestd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/aipwcf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/alos.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/anltab.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/arccap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/arcfind.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/arcget.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/arcpush.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/asciifb.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/attrfrac.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/audcats.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/b64.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/bacondcmp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/baltab.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/bandsens.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/bandvals.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/benfordtst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/blcli.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/bldl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/blfetch.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/blpal.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/blprog.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/bufasgn.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/capdeps.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/capenv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/caseflow.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cblake2b.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cbootmean.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ccovm.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ccrc32.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/certchnvrf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/certprs.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cgamcdf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/chgenv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/chn.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/chnkfile.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/chwkfit.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/chwkjit.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/chwknll.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/chwkres.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/chwksim.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cipw.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/citecps.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/clncolnms.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/clrdcmp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cmlrisk.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cmom.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnormlpdf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnormpdf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnscwb.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnsprof.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnsstd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnttrnd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/co2fp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/co2int.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cohtrnd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/commidx.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/concentration.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/connassoc.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cortbl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsatst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsbndl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpschk.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsdrft.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsfals.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsplant.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpspwr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsrfrsh.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsrpt.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsseal.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpssign.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsspec.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsvrf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsxvrf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cramerv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/crank.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/crfpm25.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/crmdens.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/crob.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/csha256.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/csha512.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cspread.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cstat.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ctrm.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cunif.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cwbscr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cwtd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/deccodes.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/declbld.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dgstobj.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dispmix.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dldata.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dlogin.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dlogout.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dmnf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drbggen.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drbgnew.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drbgrsd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drftapp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drftcal.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drftchisq.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drfthomog.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drfthtml.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drftks.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drftpsi.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drvkey.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dstfit.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dstn.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dstntst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dtctloc.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dualcont.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/duprows.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ebrates.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/envdiff.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/evlrr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/evstudy.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/expbands.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/expcnts.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/expconcidx.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/explerr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/exprspplr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/exptrnd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/falsfam.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fdl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fetchvrf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/filedgst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipskey.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipskg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipsmkg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipsmod.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipsmu.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipssz.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fnllim.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fpeqv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/freqtbl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/frmaud.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fromjs.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fylbl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/genexpo.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ghann.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/grdbin.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/grdlvls.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/grdrcd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/healchg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hilltlidx.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/holbal.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hotpers.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hqccmpkey.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hqcdecap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hqcencap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hqckg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hqcsz.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hurwzeta.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/idcrd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/indgap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/indiex.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/indtabs.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/infsch.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/inlhist.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/instcli.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/jsgz.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/jsserdoc.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/justice-data.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/kemdecap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/kemencap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/kemkg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/kemsz.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/keyeddgst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/knoxtst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ldgrread.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/lifetbl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/limfrom.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmask.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmcfg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmchat.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmmdls.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmprvd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmrte.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmstat.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/loadprov.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/loounit.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ltrlrng.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mahaoutl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mcartst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mhcont.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/missgrid.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/misspat.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/missruns.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/misssmry.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mkbndl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mkbndlchk.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mkbndlproj.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mkmnf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mkset.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mksyncol.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mksyncsv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mnfcanon.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mnfdiff.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mnfrcmp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mnfrecseed.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/morani.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mortdisp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mrk.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mtchdid.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/onl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/optsqr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/oqskg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/orchk.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ordcmp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/perdays.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/perminf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/pgsig.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/piperate.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plmfld.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plndid.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plndml.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plnpois.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plnpwr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plot-methods.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plot.rmbl_dstfit.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plotevgrid.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plothwk.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plotlrnz.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plotmore.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plotseries.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plrcf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/polbrdarea.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/polbrdn.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/polex.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/pqcbknd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/pqckg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/printmeth.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/profcols.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/profshr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/prrgdecl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/prsbands.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/pubbnd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/qltyrcd.Rd |only 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More information about rmoriebricklayer at CRAN
Permanent link
Title: A Simple Interface for Interacting with 'WebDAV' Servers
Description: An easy-to-use interface for interacting with 'WebDAV' servers,
including 'OwnCloud'. It simplifies the use of 'WebDAV' methods such as COPY, MOVE, DELETE and others.
With built-in authentication and request handling, it allows for easy
management of files and directories over the 'WebDAV' protocol.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Julia Nascimento Barreto [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between webdav versions 0.2.0 dated 2026-04-07 and 0.3.0 dated 2026-10-31
DESCRIPTION | 48 +++-- MD5 | 40 ++-- NAMESPACE | 11 - NEWS.md | 50 +++++ R/utils.R | 4 R/webdav.R | 374 +++++++++++++++++++++++++++++------------ README.md | 59 ++++++ build/vignette.rds |binary inst/doc/env_variables.html | 45 ++-- inst/doc/webdav.Rmd | 65 +++++-- inst/doc/webdav.html | 234 ++++++++++++++----------- man/webdav_copy_file.Rd | 22 ++ man/webdav_create_directory.Rd | 4 man/webdav_create_request.Rd | 2 man/webdav_delete_resource.Rd | 4 man/webdav_download_file.Rd | 4 man/webdav_list_files.Rd | 2 man/webdav_move_file.Rd |only man/webdav_upload_file.Rd | 4 tests |only vignettes/webdav.Rmd | 65 +++++-- 21 files changed, 725 insertions(+), 312 deletions(-)
Title: Statistical Matching Using Latent Class Models
Description: Provides a revised framework for statistical matching of categorical data based on latent class models, including multiple imputation, predictive modeling, nearest-neighbour hot-deck matching, and probabilistic assignment of categorical target variables. It allows researchers to perform data integration when no unique identifiers are available by modeling the joint distribution of variables through latent categorical structures. The package supports estimation of latent class models, probabilistic matching between donor and recipient data sets, and generation of synthetic linked data under uncertainty. It is particularly useful in survey research and data fusion applications where combining information from multiple sources is required while preserving statistical properties and accounting for measurement error and missing data mechanisms.
The latent class matching methods are described by Lewaa, Hafez and Ismail (2023) <doi:10.18576/jsap/120123>.
(2.0->2.1): in smc2_step2() G [...truncated...]
Author: Alicja Wolny-Dominiak [aut, cre],
Israa Lewaaelhamd [aut],
Mohammed Ali Ismail [aut]
Maintainer: Alicja Wolny-Dominiak <woali@ue.katowice.pl>
Diff between statMatchLCM versions 2.0 dated 2026-10-13 and 2.1 dated 2026-10-31
DESCRIPTION | 10 ++++++---- MD5 | 4 ++-- R/statMatchLCM.R | 4 ++-- 3 files changed, 10 insertions(+), 8 deletions(-)
Title: Geocode with the OpenCage API
Description: Geocode with the OpenCage API, either from place name to
longitude and latitude (forward geocoding) or from longitude and
latitude to the name and address of a location (reverse geocoding),
see <https://opencagedata.com>.
Author: Daniel Possenriede [aut, cre] ,
Jesse Sadler [aut] ,
Maelle Salmon [aut] ,
Noam Ross [ctb],
Jake Russ [ctb],
Julia Silge [rev] for
rOpenSci, see <https://github.com/ropensci/onboarding/issues/36>.)
Maintainer: Daniel Possenriede <possenriede+r@gmail.com>
Diff between opencage versions 0.2.2 dated 2021-02-19 and 0.3.0 dated 2026-10-31
opencage-0.2.2/opencage/R/data_doc.R |only opencage-0.2.2/opencage/R/utils.R |only opencage-0.2.2/opencage/data/countrycodes.RData |only opencage-0.2.2/opencage/inst/extdata |only opencage-0.2.2/opencage/man/opencage.Rd |only opencage-0.3.0/opencage/DESCRIPTION | 56 opencage-0.3.0/opencage/MD5 | 101 opencage-0.3.0/opencage/NEWS.md | 139 opencage-0.3.0/opencage/R/countrycodes.R |only opencage-0.3.0/opencage/R/deprecated.R | 101 opencage-0.3.0/opencage/R/oc_bbox.R | 59 opencage-0.3.0/opencage/R/oc_check_query.R | 127 opencage-0.3.0/opencage/R/oc_config.R | 8 opencage-0.3.0/opencage/R/oc_forward.R | 330 +- opencage-0.3.0/opencage/R/oc_key.R | 7 opencage-0.3.0/opencage/R/oc_points.R | 27 opencage-0.3.0/opencage/R/oc_process.R | 262 + opencage-0.3.0/opencage/R/oc_progress.R |only opencage-0.3.0/opencage/R/oc_reverse.R | 224 - opencage-0.3.0/opencage/R/opencage-package.R | 11 opencage-0.3.0/opencage/R/zzz.R | 20 opencage-0.3.0/opencage/build/vignette.rds |binary opencage-0.3.0/opencage/data/countrycodes.rda |only opencage-0.3.0/opencage/inst/doc/customise_query.Rmd | 375 +- opencage-0.3.0/opencage/inst/doc/customise_query.html | 1423 ++++++++-- opencage-0.3.0/opencage/inst/doc/opencage.Rmd | 104 opencage-0.3.0/opencage/inst/doc/opencage.html | 960 +++++- opencage-0.3.0/opencage/inst/doc/output_options.Rmd | 249 - opencage-0.3.0/opencage/inst/doc/output_options.html | 1026 ++++--- opencage-0.3.0/opencage/man/countrycodes.Rd | 2 opencage-0.3.0/opencage/man/oc_clear_cache.Rd | 2 opencage-0.3.0/opencage/man/oc_forward.Rd | 54 opencage-0.3.0/opencage/man/oc_forward_df.Rd | 63 opencage-0.3.0/opencage/man/oc_reverse.Rd | 27 opencage-0.3.0/opencage/man/oc_reverse_df.Rd | 51 opencage-0.3.0/opencage/man/opencage-package.Rd |only opencage-0.3.0/opencage/man/opencage_forward.Rd | 14 opencage-0.3.0/opencage/man/opencage_key.Rd | 4 opencage-0.3.0/opencage/man/opencage_reverse.Rd | 18 opencage-0.3.0/opencage/tests/testthat/_snaps |only opencage-0.3.0/opencage/tests/testthat/helper-opencage.R | 74 opencage-0.3.0/opencage/tests/testthat/test-deprecated.R | 183 - opencage-0.3.0/opencage/tests/testthat/test-oc_bbox.R | 10 opencage-0.3.0/opencage/tests/testthat/test-oc_build_url.R | 2 opencage-0.3.0/opencage/tests/testthat/test-oc_check_query.R | 87 opencage-0.3.0/opencage/tests/testthat/test-oc_check_status.R | 7 opencage-0.3.0/opencage/tests/testthat/test-oc_config.R | 34 opencage-0.3.0/opencage/tests/testthat/test-oc_forward.R | 284 + opencage-0.3.0/opencage/tests/testthat/test-oc_get.R | 2 opencage-0.3.0/opencage/tests/testthat/test-oc_key.R | 4 opencage-0.3.0/opencage/tests/testthat/test-oc_points.R | 18 opencage-0.3.0/opencage/tests/testthat/test-oc_process.R | 56 opencage-0.3.0/opencage/tests/testthat/test-oc_reverse.R | 295 +- opencage-0.3.0/opencage/vignettes/customise_query.Rmd | 375 +- opencage-0.3.0/opencage/vignettes/opencage.Rmd | 104 opencage-0.3.0/opencage/vignettes/output_options.Rmd | 249 - 56 files changed, 4899 insertions(+), 2729 deletions(-)
Title: Distributions Compatible with Automatic Differentiation by
'RTMB'
Description: Extends the functionality of the 'RTMB' <https://kaskr.r-universe.dev/RTMB> package by providing a collection of non-standard probability distributions compatible with automatic differentiation (AD). While 'RTMB' enables flexible and efficient modelling, including random effects, its built-in support is limited to standard distributions. The package adds additional AD-compatible distributions, broadening the range of models that can be implemented and estimated using 'RTMB'. Automatic differentiation and Laplace approximation are described in Kristensen et al. (2016) <doi:10.18637/jss.v070.i05>.
Author: Jan-Ole Fischer [aut, cre]
Maintainer: Jan-Ole Fischer <jan-ole.fischer@mailbox.org>
Diff between RTMBdist versions 1.1.0 dated 2026-09-06 and 1.2.0 dated 2026-10-31
DESCRIPTION | 12 MD5 | 302 ++++++++----- NAMESPACE | 114 ++++- NEWS.md | 56 ++ R/aaa_utils.R | 81 +++ R/ad-dispatch.R |only R/atomic.R |only R/bccg.R | 2 R/bcpe.R | 5 R/beta2.R | 4 R/betabinom.R | 31 + R/betaprime.R | 4 R/bisa.R |only R/bnbinom.R |only R/bnbinom2.R |only R/card.R |only R/circcopulas.R |only R/combinom.R | 12 R/copulas.R | 27 - R/discrete_cdf.R |only R/exgauss.R | 2 R/foldnorm.R | 13 R/frechet.R |only R/gamma2.R | 2 R/gb2.R |only R/genpois.R | 29 - R/geom-ad.R |only R/gev.R |only R/gpd.R |only R/gumbel.R | 2 R/halfcauchy.R |only R/halft.R |only R/hbetabinom.R |only R/hbinom.R |only R/hgeom.R |only R/hnbinom.R |only R/hnbinom2.R |only R/hpois.R |only R/invgamma.R | 18 R/nbinom2.R | 2 R/numerical_cdf.R |only R/oibeta.R | 4 R/pareto.R | 2 R/pbeta-workaround.R |only R/pig.R |only R/powerexp.R | 57 ++ R/sichel.R |only R/skellam.R | 85 +++ R/skewnorm.R | 47 +- R/skewnorm2.R | 1 R/skewt.R | 69 ++- R/skewt2.R | 6 R/t2.R | 42 + R/truncnorm.R | 16 R/trunct.R | 10 R/trunct2.R | 16 R/vm.R | 57 ++ R/waring.R |only R/wrpcauchy.R | 158 ++++++- R/wrpnorm.R |only R/yules.R |only R/zibeta.R | 10 R/zibeta2.R | 6 R/zibetabinom.R |only R/zibinom.R | 5 R/zigamma.R | 10 R/zigamma2.R | 6 R/zigeom.R |only R/ziinvgauss.R | 8 R/zilnorm.R | 17 R/zinbinom.R | 4 R/zipois.R | 4 R/ziweibull.R | 8 R/zoibeta.R | 4 R/ztbetabinom.R |only R/ztbinom.R | 8 R/ztgeom.R |only R/ztnbinom.R | 12 inst/doc/Examples.R | 262 +++++++++++ inst/doc/Examples.Rmd | 357 +++++++++++++++- inst/doc/Examples.html | 544 ++++++++++++++++++++---- inst/doc/adding-a-distribution.Rmd | 512 +++++++++++++---------- inst/doc/adding-a-distribution.html | 732 ++++++++++++++++++++------------- inst/doc/distlist.Rmd | 65 ++ inst/doc/distlist.html | 111 ++++- inst/extdata |only man/betabinom.Rd | 20 man/bisa.Rd |only man/bnbinom.Rd |only man/bnbinom2.Rd |only man/card.Rd |only man/cfold.Rd |only man/cfrank.Rd | 2 man/cgumbel.Rd | 6 man/cjw.Rd |only man/dcopula.Rd | 7 man/foldnorm.Rd | 6 man/frechet.Rd |only man/gb2.Rd |only man/geom.ad.Rd |only man/gev.Rd |only man/gpd.Rd |only man/gumbel.Rd | 3 man/halfcauchy.Rd |only man/halft.Rd |only man/hbetabinom.Rd |only man/hbinom.Rd |only man/hgeom.Rd |only man/hnbinom.Rd |only man/hnbinom2.Rd |only man/hpois.Rd |only man/invgamma.Rd | 2 man/pareto.Rd | 2 man/pig.Rd |only man/sichel.Rd |only man/skellam.Rd | 26 + man/skewnorm.Rd | 1 man/skewnorm2.Rd | 1 man/skewt.Rd | 4 man/skewt2.Rd | 6 man/t2.Rd | 8 man/vm.Rd | 33 + man/waring.Rd |only man/wrpcauchy.Rd | 77 +++ man/wrpnorm.Rd |only man/yules.Rd |only man/zibeta.Rd | 6 man/zibeta2.Rd | 6 man/zibetabinom.Rd |only man/zigamma.Rd | 6 man/zigamma2.Rd | 6 man/zigeom.Rd |only man/ziinvgauss.Rd | 6 man/zilnorm.Rd | 14 man/ziweibull.Rd | 6 man/ztbetabinom.Rd |only man/ztgeom.Rd |only tests/testthat/helper-distcheck.R | 171 +++++++ tests/testthat/test-atomic.R |only tests/testthat/test-bcpe.R | 30 + tests/testthat/test-betabinom-zero.R |only tests/testthat/test-betabinom.R | 35 + tests/testthat/test-bisa.R |only tests/testthat/test-bnbinom.R |only tests/testthat/test-bnbinom2.R |only tests/testthat/test-card.R |only tests/testthat/test-circcopulas.R |only tests/testthat/test-combinom.R | 8 tests/testthat/test-copulas.R |only tests/testthat/test-exgauss.R | 18 tests/testthat/test-foldnorm.R | 6 tests/testthat/test-frechet.R |only tests/testthat/test-gamma2.R | 8 tests/testthat/test-gb2.R |only tests/testthat/test-gengamma.R | 7 tests/testthat/test-genpois.R | 15 tests/testthat/test-geom-zero.R |only tests/testthat/test-gev.R |only tests/testthat/test-gpd.R |only tests/testthat/test-halfcauchy.R |only tests/testthat/test-halft.R |only tests/testthat/test-hbinom.R |only tests/testthat/test-hnbinom.R |only tests/testthat/test-hnbinom2.R |only tests/testthat/test-hpois.R |only tests/testthat/test-invchisq.R | 7 tests/testthat/test-invgamma.R | 35 + tests/testthat/test-pbeta-workaround.R |only tests/testthat/test-pig.R |only tests/testthat/test-powerexp.R | 29 + tests/testthat/test-recycling.R | 22 tests/testthat/test-sichel.R |only tests/testthat/test-skellam.R | 121 +++++ tests/testthat/test-skewnorm.R | 111 +++++ tests/testthat/test-skewnorm2.R | 9 tests/testthat/test-skewt.R | 78 +++ tests/testthat/test-skewt2.R | 9 tests/testthat/test-t2.R | 23 + tests/testthat/test-truncnorm.R | 21 tests/testthat/test-trunct.R | 16 tests/testthat/test-trunct2.R | 25 + tests/testthat/test-vm.R | 56 ++ tests/testthat/test-waring.R |only tests/testthat/test-wrpcauchy.R | 198 ++++++++ tests/testthat/test-wrpnorm.R |only tests/testthat/test-yules.R |only tests/testthat/test-zibinom.R | 8 tests/testthat/test-zigamma.R | 16 tests/testthat/test-zigamma2.R | 7 tests/testthat/test-ztbinom.R | 14 tests/testthat/test-ztnbinom.R | 13 tests/testthat/test-ztnbinom2.R | 13 vignettes/Examples.Rmd | 357 +++++++++++++++- vignettes/adding-a-distribution.Rmd | 512 +++++++++++++---------- vignettes/distlist.Rmd | 65 ++ 195 files changed, 5118 insertions(+), 1172 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: Jose Pinheiro [aut] ,
Douglas Bates [aut] ,
Saikat DebRoy [ctb] ,
Deepayan Sarkar [ctb] ,
EISPACK authors [ctb] ,
Siem Heisterkamp [ctb] ,
Bert Van Willigen [ctb] ,
Johannes Ranke [ctb] ),
R Core Team [aut, cre]
Maintainer: R Core Team <R-core@R-project.org>
Diff between nlme versions 3.1-171 dated 2026-09-01 and 3.1-172 dated 2026-10-31
ChangeLog | 8 +++++++- DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- tests/deparse.R | 6 +++++- tests/nlme.R | 6 ++++-- tests/predict.lme.R | 6 +++--- 6 files changed, 28 insertions(+), 16 deletions(-)
Title: Connecting Stream Mining Components Using Sockets and Web
Services
Description: Adds functionality to connect stream mining components from the stream package using sockets and Web services. The package can be used to create distributed workflows and plumber-based Web services that can be deployed on most common cloud services.
Author: Michael Hahsler [aut, cre, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between streamConnect versions 0.1.1 dated 2026-10-29 and 0.1.2 dated 2026-10-31
streamConnect-0.1.1/streamConnect/R/has_localhost_server.R |only streamConnect-0.1.1/streamConnect/man/has_localhost_server.Rd |only streamConnect-0.1.2/streamConnect/DESCRIPTION | 8 streamConnect-0.1.2/streamConnect/MD5 | 53 +-- streamConnect-0.1.2/streamConnect/NAMESPACE | 1 streamConnect-0.1.2/streamConnect/NEWS.md | 14 streamConnect-0.1.2/streamConnect/R/DSC_WebService.R | 15 streamConnect-0.1.2/streamConnect/R/DSD_ReadSocket.R | 16 streamConnect-0.1.2/streamConnect/R/DSD_ReadWebService.R | 15 streamConnect-0.1.2/streamConnect/R/plumber.R | 2 streamConnect-0.1.2/streamConnect/R/publish_DSC_via_WebService.R | 17 streamConnect-0.1.2/streamConnect/R/publish_DSD_via_Socket.R | 13 streamConnect-0.1.2/streamConnect/R/publish_DSD_via_WebService.R | 23 - streamConnect-0.1.2/streamConnect/R/retry.R | 1 streamConnect-0.1.2/streamConnect/inst/doc/streamConnect.R | 46 +- streamConnect-0.1.2/streamConnect/inst/doc/streamConnect.Rmd | 51 +- streamConnect-0.1.2/streamConnect/inst/doc/streamConnect.html | 176 +++++----- streamConnect-0.1.2/streamConnect/man/DSC_WebService.Rd | 16 streamConnect-0.1.2/streamConnect/man/DSD_ReadSocket.Rd | 16 streamConnect-0.1.2/streamConnect/man/DSD_ReadWebService.Rd | 16 streamConnect-0.1.2/streamConnect/man/publish_DSC_via_WebService.Rd | 17 streamConnect-0.1.2/streamConnect/man/publish_DSD_via_Socket.Rd | 13 streamConnect-0.1.2/streamConnect/man/publish_DSD_via_WebService.Rd | 23 - streamConnect-0.1.2/streamConnect/tests/testthat.R | 2 streamConnect-0.1.2/streamConnect/tests/testthat/test-port-examples.R |only streamConnect-0.1.2/streamConnect/tests/testthat/test-retry.R | 30 + streamConnect-0.1.2/streamConnect/tests/testthat/test-socket-localhost.R |only streamConnect-0.1.2/streamConnect/tests/testthat/test-webservice-helpers.R | 98 +++++ streamConnect-0.1.2/streamConnect/tests/testthat/test-webservice-localhost.R |only streamConnect-0.1.2/streamConnect/vignettes/streamConnect.Rmd | 51 +- 30 files changed, 462 insertions(+), 271 deletions(-)
Title: Statistical Tools Designed for End Users
Description: The statistical tools in this package do one of four things:
1) Enhance basic statistical functions with more
flexible inputs, smarter defaults, and richer, clearer, and ready-to-use
output (e.g., t.test2())
2) Produce publication-ready commonly needed figures with one line of code (e.g., plot_cdf())
3) Implement novel analytical tools developed by the authors (e.g., twolines())
4) Deliver niche functions of high value to the authors that are not easily
available elsewhere (e.g., clear(), convert_to_sql(), resize_images()).
Author: Uri Simonsohn [aut, cre]
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between statuser versions 0.4.0 dated 2026-10-09 and 0.4.1 dated 2026-10-31
statuser-0.4.0/statuser/tests/testthat/test-round2.R |only statuser-0.4.1/statuser/DESCRIPTION | 16 statuser-0.4.1/statuser/MD5 | 66 statuser-0.4.1/statuser/NAMESPACE | 116 statuser-0.4.1/statuser/NEWS.md | 17 statuser-0.4.1/statuser/R/data.R |only statuser-0.4.1/statuser/R/interprobe.R | 398 - statuser-0.4.1/statuser/R/interprobe_helpers.R | 2417 +++---- statuser-0.4.1/statuser/R/lm2.R | 3018 ++++---- statuser-0.4.1/statuser/R/plot_freq.R | 182 statuser-0.4.1/statuser/R/plot_gam.R | 2 statuser-0.4.1/statuser/R/round2.R | 102 statuser-0.4.1/statuser/R/stimulus.plot.R | 2 statuser-0.4.1/statuser/R/stimulus_auxiliary.R | 3405 +++++----- statuser-0.4.1/statuser/R/t.test2.R | 173 statuser-0.4.1/statuser/R/validate.R | 16 statuser-0.4.1/statuser/R/zzz.R | 6 statuser-0.4.1/statuser/README.md | 30 statuser-0.4.1/statuser/build/vignette.rds |only statuser-0.4.1/statuser/data |only statuser-0.4.1/statuser/inst |only statuser-0.4.1/statuser/man/interprobe.Rd | 303 statuser-0.4.1/statuser/man/interprobe_sim.Rd |only statuser-0.4.1/statuser/man/plot_freq.Rd | 31 statuser-0.4.1/statuser/man/t.test2.Rd | 13 statuser-0.4.1/statuser/man/tacos_data.Rd |only statuser-0.4.1/statuser/man/validate_plot.Rd | 12 statuser-0.4.1/statuser/tests/UNIT_TESTS.md | 2 statuser-0.4.1/statuser/tests/testthat/Rplots.pdf |binary statuser-0.4.1/statuser/tests/testthat/test-backend_equivalence.R | 427 - statuser-0.4.1/statuser/tests/testthat/test-interprobe.R | 1417 +--- statuser-0.4.1/statuser/tests/testthat/test-lm2.R | 30 statuser-0.4.1/statuser/tests/testthat/test-plot_freq.R | 126 statuser-0.4.1/statuser/tests/testthat/test-stimulus.plot.R | 519 - statuser-0.4.1/statuser/tests/testthat/test-t.test2.R | 71 statuser-0.4.1/statuser/vignettes |only 36 files changed, 6742 insertions(+), 6175 deletions(-)
Title: Publication-Ready Tables for Descriptive Statistics and
Regression Models
Description: Provides publication-ready tables for descriptive statistics
and regression models: frequency tables and cross-tabulations with
association measures (Cramér's V, Kendall's Tau-b, and others),
categorical and continuous summary tables, by group or from a complex
survey design, and regression tables for one or more models side by
side, across more than thirty model classes from mixed-effects to
survival and Bayesian, with robust standard errors, average marginal
effects, and univariable screening. Tables follow APA conventions by
default, can switch to named journal styles such as JAMA, NEJM, or
The Lancet, and render identically in the console and in 'gt',
'tinytable', 'flextable', 'Word', 'Excel', or the clipboard. Declared
missing values in labelled data are honored and disclosed throughout
the descriptive tables. Helpers cover codebooks, variable inspection,
and row-wise summaries.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.13.0 dated 2026-10-01 and 0.14.0 dated 2026-10-31
spicy-0.13.0/spicy/R/code_book-filename.R |only spicy-0.14.0/spicy/DESCRIPTION | 24 spicy-0.14.0/spicy/MD5 | 734 - spicy-0.14.0/spicy/NAMESPACE | 15 spicy-0.14.0/spicy/NEWS.md | 545 + spicy-0.14.0/spicy/R/abort.R | 208 spicy-0.14.0/spicy/R/assoc.R | 14 spicy-0.14.0/spicy/R/code_book-typst.R |only spicy-0.14.0/spicy/R/code_book-validation.R | 636 + spicy-0.14.0/spicy/R/code_book-xlsx.R |only spicy-0.14.0/spicy/R/code_book.R | 1002 + spicy-0.14.0/spicy/R/cross_tab.R | 81 spicy-0.14.0/spicy/R/data.R | 57 spicy-0.14.0/spicy/R/excel_helpers.R | 188 spicy-0.14.0/spicy/R/flextable_helpers.R | 120 spicy-0.14.0/spicy/R/freq.R | 37 spicy-0.14.0/spicy/R/glm_compute.R | 46 spicy-0.14.0/spicy/R/i18n.R | 1057 +- spicy-0.14.0/spicy/R/i18n_fr.R | 541 - spicy-0.14.0/spicy/R/inline.R | 1068 +- spicy-0.14.0/spicy/R/label_from_names.R | 2 spicy-0.14.0/spicy/R/lm_compute.R | 14 spicy-0.14.0/spicy/R/lm_helpers.R | 111 spicy-0.14.0/spicy/R/regression_align.R | 26 spicy-0.14.0/spicy/R/regression_ame.R | 25 spicy-0.14.0/spicy/R/regression_broom.R | 607 - spicy-0.14.0/spicy/R/regression_dispatch.R | 709 - spicy-0.14.0/spicy/R/regression_extract.R | 30 spicy-0.14.0/spicy/R/regression_frame.R | 227 spicy-0.14.0/spicy/R/regression_frame_MASS.R | 4 spicy-0.14.0/spicy/R/regression_frame_estimatr.R | 4 spicy-0.14.0/spicy/R/regression_frame_fixest.R | 8 spicy-0.14.0/spicy/R/regression_frame_flexsurv_selection.R | 6 spicy-0.14.0/spicy/R/regression_frame_geepack.R | 28 spicy-0.14.0/spicy/R/regression_frame_glmmTMB.R | 271 spicy-0.14.0/spicy/R/regression_frame_lm.R | 59 spicy-0.14.0/spicy/R/regression_frame_merMod.R | 67 spicy-0.14.0/spicy/R/regression_frame_mgcv.R | 13 spicy-0.14.0/spicy/R/regression_frame_mlogit_betareg.R | 18 spicy-0.14.0/spicy/R/regression_frame_multinom.R | 13 spicy-0.14.0/spicy/R/regression_frame_nlme.R | 81 spicy-0.14.0/spicy/R/regression_frame_nls.R | 4 spicy-0.14.0/spicy/R/regression_frame_ordinal.R | 279 spicy-0.14.0/spicy/R/regression_frame_pscl.R | 36 spicy-0.14.0/spicy/R/regression_frame_quantreg_AER.R | 20 spicy-0.14.0/spicy/R/regression_frame_rms.R | 12 spicy-0.14.0/spicy/R/regression_frame_stan.R | 112 spicy-0.14.0/spicy/R/regression_frame_survival.R | 3 spicy-0.14.0/spicy/R/regression_frame_svycoxph.R | 4 spicy-0.14.0/spicy/R/regression_frame_svyglm.R | 10 spicy-0.14.0/spicy/R/regression_frame_svyolr.R | 2 spicy-0.14.0/spicy/R/regression_nested.R | 355 spicy-0.14.0/spicy/R/regression_partial.R | 39 spicy-0.14.0/spicy/R/regression_re_test.R | 26 spicy-0.14.0/spicy/R/regression_render.R | 498 spicy-0.14.0/spicy/R/regression_structured.R | 83 spicy-0.14.0/spicy/R/regression_survival_estimands.R | 8 spicy-0.14.0/spicy/R/regression_titlefooter.R | 1097 +- spicy-0.14.0/spicy/R/regression_uv.R | 295 spicy-0.14.0/spicy/R/regression_validate.R | 748 - spicy-0.14.0/spicy/R/row_n_helpers.R | 8 spicy-0.14.0/spicy/R/selection_helpers.R | 434 spicy-0.14.0/spicy/R/smd.R | 4 spicy-0.14.0/spicy/R/spicy-package.R | 194 spicy-0.14.0/spicy/R/spicy_style.R | 450 spicy-0.14.0/spicy/R/spicy_tables.R | 8 spicy-0.14.0/spicy/R/standardize_glm.R | 18 spicy-0.14.0/spicy/R/standardize_lm.R | 73 spicy-0.14.0/spicy/R/survey_helpers.R | 179 spicy-0.14.0/spicy/R/table_categorical.R | 3733 +++++-- spicy-0.14.0/spicy/R/table_categorical_print.R | 475 spicy-0.14.0/spicy/R/table_categorical_svy.R | 812 + spicy-0.14.0/spicy/R/table_categorical_svy_print.R | 269 spicy-0.14.0/spicy/R/table_categorical_svy_render.R | 168 spicy-0.14.0/spicy/R/table_continuous.R | 1931 ++- spicy-0.14.0/spicy/R/table_continuous_lm.R | 1528 ++- spicy-0.14.0/spicy/R/table_continuous_lm_print.R | 558 - spicy-0.14.0/spicy/R/table_continuous_lm_render.R | 507 spicy-0.14.0/spicy/R/table_continuous_print.R | 223 spicy-0.14.0/spicy/R/table_continuous_svy.R | 885 + spicy-0.14.0/spicy/R/table_continuous_svy_print.R | 59 spicy-0.14.0/spicy/R/table_helpers.R | 1705 +++ spicy-0.14.0/spicy/R/table_multiresponse.R |only spicy-0.14.0/spicy/R/table_multiresponse_print.R |only spicy-0.14.0/spicy/R/table_outcome.R | 959 + spicy-0.14.0/spicy/R/table_outcome_print.R | 121 spicy-0.14.0/spicy/R/table_regression.R | 686 - spicy-0.14.0/spicy/R/table_regression_models.R | 74 spicy-0.14.0/spicy/R/tables_ascii.R | 41 spicy-0.14.0/spicy/R/tables_structured.R | 328 spicy-0.14.0/spicy/R/tt_theme.R | 859 + spicy-0.14.0/spicy/R/user_na.R | 59 spicy-0.14.0/spicy/R/var_labels.R |only spicy-0.14.0/spicy/R/varlist-validation.R | 190 spicy-0.14.0/spicy/R/varlist-values.R | 4 spicy-0.14.0/spicy/R/varlist.R | 67 spicy-0.14.0/spicy/R/vcov.R | 312 spicy-0.14.0/spicy/R/vcov_glmmTMB.R |only spicy-0.14.0/spicy/R/vcov_mgcv.R |only spicy-0.14.0/spicy/R/weighted_stats.R | 168 spicy-0.14.0/spicy/README.md | 337 spicy-0.14.0/spicy/data/sochealth.rda |binary spicy-0.14.0/spicy/inst/WORDLIST | 127 spicy-0.14.0/spicy/inst/doc/spicy.R | 18 spicy-0.14.0/spicy/inst/doc/spicy.Rmd | 74 spicy-0.14.0/spicy/inst/doc/spicy.html | 629 - spicy-0.14.0/spicy/inst/typst |only spicy-0.14.0/spicy/man/as.data.frame.spicy_categorical_svy_table.Rd | 15 spicy-0.14.0/spicy/man/as.data.frame.spicy_categorical_table.Rd | 96 spicy-0.14.0/spicy/man/as.data.frame.spicy_continuous_lm_table.Rd | 93 spicy-0.14.0/spicy/man/as.data.frame.spicy_continuous_svy_table.Rd | 12 spicy-0.14.0/spicy/man/as.data.frame.spicy_continuous_table.Rd | 100 spicy-0.14.0/spicy/man/as.data.frame.spicy_multiresponse_table.Rd |only spicy-0.14.0/spicy/man/as.data.frame.spicy_outcome_table.Rd | 28 spicy-0.14.0/spicy/man/as.data.frame.spicy_regression_table.Rd | 32 spicy-0.14.0/spicy/man/as_structured.Rd | 93 spicy-0.14.0/spicy/man/assoc_measures.Rd | 2 spicy-0.14.0/spicy/man/code_book.Rd | 407 spicy-0.14.0/spicy/man/count_n.Rd | 11 spicy-0.14.0/spicy/man/cramer_v.Rd | 6 spicy-0.14.0/spicy/man/cross_tab.Rd | 26 spicy-0.14.0/spicy/man/freq.Rd | 29 spicy-0.14.0/spicy/man/inline.Rd | 113 spicy-0.14.0/spicy/man/mean_n.Rd | 11 spicy-0.14.0/spicy/man/phi.Rd | 2 spicy-0.14.0/spicy/man/print.spicy_multiresponse_table.Rd |only spicy-0.14.0/spicy/man/sochealth.Rd | 233 spicy-0.14.0/spicy/man/spicy-package.Rd | 194 spicy-0.14.0/spicy/man/spicy_labels.Rd | 12 spicy-0.14.0/spicy/man/spicy_print_table.Rd | 6 spicy-0.14.0/spicy/man/spicy_style.Rd | 164 spicy-0.14.0/spicy/man/spicy_tables.Rd | 78 spicy-0.14.0/spicy/man/sum_n.Rd | 11 spicy-0.14.0/spicy/man/table_categorical.Rd | 711 + spicy-0.14.0/spicy/man/table_categorical_svy.Rd | 332 spicy-0.14.0/spicy/man/table_continuous.Rd | 447 spicy-0.14.0/spicy/man/table_continuous_lm.Rd | 509 spicy-0.14.0/spicy/man/table_continuous_svy.Rd | 369 spicy-0.14.0/spicy/man/table_multiresponse.Rd |only spicy-0.14.0/spicy/man/table_outcome.Rd | 414 spicy-0.14.0/spicy/man/table_regression.Rd | 478 spicy-0.14.0/spicy/man/table_regression_models.Rd | 53 spicy-0.14.0/spicy/man/table_regression_uv.Rd | 86 spicy-0.14.0/spicy/man/terms.spicy_uv_screen.Rd | 4 spicy-0.14.0/spicy/man/tidy.spicy_categorical_svy_table.Rd | 23 spicy-0.14.0/spicy/man/tidy.spicy_categorical_table.Rd | 113 spicy-0.14.0/spicy/man/tidy.spicy_continuous_lm_table.Rd | 125 spicy-0.14.0/spicy/man/tidy.spicy_continuous_svy_table.Rd | 17 spicy-0.14.0/spicy/man/tidy.spicy_continuous_table.Rd | 38 spicy-0.14.0/spicy/man/tidy.spicy_multiresponse_table.Rd |only spicy-0.14.0/spicy/man/tidy.spicy_outcome_table.Rd | 15 spicy-0.14.0/spicy/man/var_labels.Rd |only spicy-0.14.0/spicy/man/varlist.Rd | 11 spicy-0.14.0/spicy/tests/testthat.R | 118 spicy-0.14.0/spicy/tests/testthat/_snaps/code_book-typst.md |only spicy-0.14.0/spicy/tests/testthat/_snaps/code_book.md |only spicy-0.14.0/spicy/tests/testthat/_snaps/engine_parity_tinytable.md |only spicy-0.14.0/spicy/tests/testthat/_snaps/i18n.md | 412 spicy-0.14.0/spicy/tests/testthat/_snaps/i18n_language.md | 101 spicy-0.14.0/spicy/tests/testthat/_snaps/mlogit_two_segment.md | 4 spicy-0.14.0/spicy/tests/testthat/_snaps/multinom_columns.md | 4 spicy-0.14.0/spicy/tests/testthat/_snaps/regression_frame_glmmTMB.md |only spicy-0.14.0/spicy/tests/testthat/_snaps/regression_frame_ordinal.md |only spicy-0.14.0/spicy/tests/testthat/_snaps/regression_nested.md |only spicy-0.14.0/spicy/tests/testthat/_snaps/regression_uv.md | 6 spicy-0.14.0/spicy/tests/testthat/_snaps/smd-engines.md | 24 spicy-0.14.0/spicy/tests/testthat/_snaps/snapshots.md | 46 spicy-0.14.0/spicy/tests/testthat/_snaps/spicy_style.md | 6 spicy-0.14.0/spicy/tests/testthat/_snaps/survey_edges.md | 10 spicy-0.14.0/spicy/tests/testthat/_snaps/table_categorical.md |only spicy-0.14.0/spicy/tests/testthat/_snaps/table_categorical_svy.md | 6 spicy-0.14.0/spicy/tests/testthat/_snaps/table_continuous.md |only spicy-0.14.0/spicy/tests/testthat/_snaps/table_continuous_svy.md | 8 spicy-0.14.0/spicy/tests/testthat/_snaps/table_multiresponse.md |only spicy-0.14.0/spicy/tests/testthat/_snaps/table_outcome.md | 102 spicy-0.14.0/spicy/tests/testthat/_snaps/table_regression.md | 10 spicy-0.14.0/spicy/tests/testthat/helper-sticky.R |only spicy-0.14.0/spicy/tests/testthat/setup.R | 13 spicy-0.14.0/spicy/tests/testthat/test-ame-by-class.R | 65 spicy-0.14.0/spicy/tests/testthat/test-ame_mixed.R | 554 - 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spicy-0.14.0/spicy/vignettes/spicy.Rmd | 74 387 files changed, 71893 insertions(+), 27404 deletions(-)
Title: Splitting Conic Solver
Description: Solves convex cone programs via operator splitting. Can solve:
linear programs ('LPs'), second-order cone programs ('SOCPs'), semidefinite programs
('SDPs'), exponential cone programs ('ECPs'), and power cone programs ('PCPs'), or
problems with any combination of those cones. 'SCS' uses 'AMD' (a set of routines for permuting sparse matrices prior to factorization) and 'LDL' (a sparse 'LDL' factorization and solve package) from 'SuiteSparse' (<https://people.engr.tamu.edu/davis/suitesparse.html>).
Author: Florian Schwendinger [aut, cre],
Brendan O'Donoghue [aut, cph],
Balasubramanian Narasimhan [aut],
Timothy A. Davis [cph],
Patrick R. Amestoy [cph],
Iain S. Duff [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between scs versions 3.2.7 dated 2025-04-14 and 3.3.1 dated 2026-10-31
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scs-3.3.1/scs/inst/tinytest/problem_results/unbounded_lp.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/unbounded_socp.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/unbounded_tiny_qp.RDS |binary scs-3.3.1/scs/inst/tinytest/test_cone_fields.R |only scs-3.3.1/scs/inst/tinytest/test_empty_matrix.R |only scs-3.3.1/scs/inst/tinytest/test_problems.R | 351 +- scs-3.3.1/scs/inst/tinytest/test_socp.R | 2 scs-3.3.1/scs/inst/tinytest/test_sparse_utils.R | 26 scs-3.3.1/scs/man/scs.Rd | 63 scs-3.3.1/scs/man/scs_control.Rd | 34 scs-3.3.1/scs/man/scs_version.Rd |only scs-3.3.1/scs/src/Makevars | 30 scs-3.3.1/scs/src/Makevars.win | 17 scs-3.3.1/scs/src/init.c | 9 scs-3.3.1/scs/src/scs/Makefile | 181 - scs-3.3.1/scs/src/scs/include/aa.h | 70 scs-3.3.1/scs/src/scs/include/aa_stats.h |only scs-3.3.1/scs/src/scs/include/cones.h | 70 scs-3.3.1/scs/src/scs/include/glbopts.h | 161 scs-3.3.1/scs/src/scs/include/linalg.h | 6 scs-3.3.1/scs/src/scs/include/linsys.h | 3 scs-3.3.1/scs/src/scs/include/normalize.h | 8 scs-3.3.1/scs/src/scs/include/rw.h | 12 scs-3.3.1/scs/src/scs/include/scs.h | 47 scs-3.3.1/scs/src/scs/include/scs_blas.h | 12 scs-3.3.1/scs/src/scs/include/scs_types.h | 4 scs-3.3.1/scs/src/scs/include/scs_work.h | 23 scs-3.3.1/scs/src/scs/include/util.h | 8 scs-3.3.1/scs/src/scs/include/util_spectral_cones.h |only scs-3.3.1/scs/src/scs/linsys/cpu/direct/private.c | 136 scs-3.3.1/scs/src/scs/linsys/cpu/direct/private.h | 3 scs-3.3.1/scs/src/scs/linsys/csparse.c | 14 scs-3.3.1/scs/src/scs/linsys/csparse.h | 6 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_1.c | 2 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_2.c | 88 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_aat.c | 10 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_dump.c | 24 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_post_tree.c | 6 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_postorder.c | 16 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_valid.c | 10 scs-3.3.1/scs/src/scs/linsys/external/qdldl/qdldl_types.h | 2 scs-3.3.1/scs/src/scs/linsys/scs_matrix.c | 456 +- scs-3.3.1/scs/src/scs/linsys/scs_matrix.h | 16 scs-3.3.1/scs/src/scs/scs.mk | 67 scs-3.3.1/scs/src/scs/src/aa.c | 839 +++- scs-3.3.1/scs/src/scs/src/cones.c | 1688 +++++++--- scs-3.3.1/scs/src/scs/src/ctrlc.c | 75 scs-3.3.1/scs/src/scs/src/exp_cone.c | 296 + scs-3.3.1/scs/src/scs/src/linalg.c | 29 scs-3.3.1/scs/src/scs/src/normalize.c | 50 scs-3.3.1/scs/src/scs/src/rw.c | 736 +++- scs-3.3.1/scs/src/scs/src/scs.c | 1375 +++++--- scs-3.3.1/scs/src/scs/src/util.c | 44 scs-3.3.1/scs/src/scs_mods/README.md | 33 scs-3.3.1/scs/src/scs_mods/cones.c |only scs-3.3.1/scs/src/scs_mods/scs.mk | 69 scs-3.3.1/scs/src/scsr.c | 616 +-- 158 files changed, 6140 insertions(+), 2391 deletions(-)
Title: 'SCS' Plug-in for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the 'SCS' solver for solving convex cone problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.scs versions 1.1-2 dated 2023-07-07 and 1.1-4 dated 2026-10-31
ROI.plugin.scs-1.1-2/ROI.plugin.scs/tests/test_scs.R |only ROI.plugin.scs-1.1-4/ROI.plugin.scs/DESCRIPTION | 11 ++++++----- ROI.plugin.scs-1.1-4/ROI.plugin.scs/MD5 | 11 +++++++---- ROI.plugin.scs-1.1-4/ROI.plugin.scs/R/plugin.R | 14 +++++++------- ROI.plugin.scs-1.1-4/ROI.plugin.scs/man/Example_03.Rd | 4 ++-- ROI.plugin.scs-1.1-4/ROI.plugin.scs/tests/tinytest |only ROI.plugin.scs-1.1-4/ROI.plugin.scs/tests/tinytest.R |only 7 files changed, 22 insertions(+), 18 deletions(-)
More information about ROI.plugin.scs at CRAN
Permanent link
Title: Thread-Safe C++ Trust Region Optimizers
Description: Thread-safe C++ trust region optimizers, each exposed
both as an R function and as a C-callable entry point (with function
pointers registered for other packages to call without linking
against this package's shared library) so they can be used from
parallel C++ code such as in 'nlmixr2est'. Includes a port of the
two-derivative trust region algorithm in the 'trust' package by
Charles J. Geyer; a port of the Steihaug truncated conjugate-gradient
trust region method from the 'basin' Rust crate (Steihaug (1983)
<doi:10.1137/0720042>); and ports of M. J. D. Powell's
derivative-free BOBYQA (Powell (2009), Report DAMTP 2009/NA06) and
NEWUOA (Powell (2006) <doi:10.1007/0-387-30065-1_16>) Fortran 77
code <https://github.com/libprima/prima/tree/main/fortran/original>,
as modified and distributed in the 'minqa' package, whose R
interface is reproduced.
Author: Charles J. Geyer [aut, cph] ,
Matthew Fidler [aut, cre] ,
Michael J. D. Powell [aut] ,
Douglas Bates [ctb, cph] ,
Katharine M. Mullen [ctb, cph] ,
John C. Nash [ctb, cph] ,
Ravi Varadhan [ctb, cph] ,
Johan Larsson [ctb, cph]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between RcppTrust versions 0.2.0 dated 2026-10-27 and 0.2.1 dated 2026-10-31
DESCRIPTION | 6 +- MD5 | 23 +++++---- NEWS.md | 21 ++++++++ inst/doc/RcppTrust.R | 66 ++++++++++++++-------------- inst/doc/RcppTrust.html | 29 ++++++++---- src/minqa_r_interface.cpp | 14 ++--- src/r_callback_error.h |only src/solver_test_objfuns.cpp | 3 - src/steihaug_r_interface.cpp | 14 ++--- src/trust_test_objfuns.cpp | 5 +- tests/testthat/test-c-objfun-threadsafety.R | 6 ++ tests/testthat/test-minqa.R | 66 ++++++++++++++++++++-------- tests/testthat/test-steihaug.R | 12 +++++ 13 files changed, 175 insertions(+), 90 deletions(-)
Title: Calculation of Slope-Dependant Accumulated Cost Surface,
Least-Cost Paths, Least-Cost Corridors, Least-Cost Networks
Related to Human Movement Across the Landscape
Description: Provides the facility to calculate non-isotropic accumulated cost surfaces, least-cost paths, least-cost corridors, least-cost networks, ranked alternative paths, cost allocation and cost boundaries, using a number of human-movement-related cost functions that can be selected by the user. The terrain factor can be set as a single value or vary across the landscape via a raster of terrain factors or terrain classes. The package is built around a compute-once design: a single cost surface object is created first and then reused by every analysis function, avoiding redundant computation. Visualisation is fully decoupled from computation and is provided through 'ggplot2' methods that can be invoked, customised, and re-invoked at any time without re-running any analysis. It just requires a Digital Terrain Model, a start location and (optionally) destination locations. See Alberti (2019) <doi:10.1016/j.softx.2019.100331>.
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Diff between movecost versions 3.1.0 dated 2026-10-29 and 3.1.1 dated 2026-10-31
DESCRIPTION | 6 MD5 | 29 +- NEWS.md | 92 +++++++++ R/cost_functions.R | 419 +++++++++++++++++++++++++----------------- R/mc_accum.R | 9 R/mc_surface.R | 25 ++ README.md | 8 inst/doc/movecost.Rmd | 5 inst/doc/movecost.html | 56 ++--- inst/validation/README.md | 7 inst/validation/compare_v23.R | 14 + man/mc_accum.Rd | 9 man/mc_cost_functions.Rd | 206 ++++++++++++++------ tests/testthat/helper-grids.R | 4 tests/testthat/test-sources.R |only vignettes/movecost.Rmd | 5 16 files changed, 610 insertions(+), 284 deletions(-)
Title: Parsing Glycan Structure Text Representations
Description: Provides functions to parse glycan structure text representations
into 'glyrepr' glycan structures. Currently, it supports StrucGP-style,
pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, IUPAC-compact,
WURCS, LINUCS, Linear Code, GlycoCT, KCF, and GlycoWorkbench formats. It
also provides an automatic parser to detect the format and parse the
structure string.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glyparse versions 1.0.0 dated 2026-10-30 and 1.0.1 dated 2026-10-31
DESCRIPTION | 6 MD5 | 10 NEWS.md | 9 inst/doc/glyparse.html | 464 +++++++++++++++++++++++-------------------- src/native-api.cpp | 4 tests/testthat/test-native.R | 38 +++ 6 files changed, 304 insertions(+), 227 deletions(-)
Title: Generalized Additive Latent and Mixed Models
Description: Estimates generalized additive latent and
mixed models using maximum marginal likelihood,
as defined in Sorensen et al. (2023)
<doi:10.1007/s11336-023-09910-z>, which is an extension of Rabe-Hesketh and
Skrondal (2004)'s unifying framework for multilevel latent variable
modeling <doi:10.1007/BF02295939>. Efficient computation is done using sparse
matrix methods, Laplace approximation, and automatic differentiation. The
framework includes generalized multilevel models with heteroscedastic
residuals, mixed response types, factor loadings, smoothing splines,
crossed random effects, and combinations thereof. Syntax for model
formulation is close to 'lme4' (Bates et al. (2015)
<doi:10.18637/jss.v067.i01>) and 'PLmixed' (Rockwood and Jeon (2019)
<doi:10.1080/00273171.2018.1516541>).
Author: Oeystein Soerensen [aut, cre] ,
Douglas Bates [ctb],
Ben Bolker [ctb],
Martin Maechler [ctb],
Allan Leal [ctb],
Fabian Scheipl [ctb],
Steven Walker [ctb],
Simon Wood [ctb]
Maintainer: Oeystein Soerensen <oystein.sorensen@psykologi.uio.no>
Diff between galamm versions 0.4.1 dated 2026-08-31 and 0.4.2 dated 2026-10-31
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS.md | 5 +++++ R/data.R | 4 ++-- README.md | 2 +- build/partial.rdb |binary inst/doc/galamm.Rmd | 2 +- inst/doc/galamm.html | 7 +++---- inst/include/autodiff/common/eigen.hpp | 22 +++++++++++++++++++++- inst/include/autodiff/common/meta.hpp | 2 +- man/diet.Rd | 2 +- man/epilep.Rd | 2 +- src/RcppExports.cpp | 6 +++--- src/compute_galamm.cpp | 4 ++-- vignettes/galamm.Rmd | 2 +- 15 files changed, 60 insertions(+), 36 deletions(-)
Title: Structured Data Science Project Scaffolding
Description: Project scaffolding and workflow tools for reproducible data science.
Manages packages, tracks data integrity, handles database connections,
generates notebooks, and publishes to S3-compatible storage.
More information at <https://framework.table1.org>.
Author: Erik Westlund [aut, cre, cph]
Maintainer: Erik Westlund <erik@framework.pub>
Diff between framework versions 1.1.0 dated 2026-10-28 and 1.1.1 dated 2026-10-31
DESCRIPTION | 15 ++++---- MD5 | 34 +++++++++--------- NEWS.md | 25 +++++++++++++ R/data_write.R | 22 ++++++++++-- R/new_project.R | 11 ++---- R/project_create.R | 62 ++++++++++++++++++++++++++++++++-- R/renv.R | 4 +- R/scaffold.R | 31 ++++++++--------- R/security_audit.R | 57 +++++++++++++++++++++++++++++-- README.md | 2 - inst/gui/docs.db |binary inst/templates/test.R | 2 - man/dot-check_secrets_exposure.Rd |only man/framework-package.Rd | 8 ++-- man/git_security_audit.Rd | 2 + man/new_project.Rd | 2 - tests/testthat/test-data.R | 17 +++++++++ tests/testthat/test-scaffold.R | 17 +++++++++ tests/testthat/test-secrets-ignored.R |only 19 files changed, 251 insertions(+), 60 deletions(-)
Title: Extinction Date Estimation from Sighting Records
Description: Infers the extinction of a species from a time-ordered record of
sightings, collecting methods from the sighting-record and
stratigraphic-range literature under one interface. Includes endpoint
estimators (Robson & Whitlock, 1964; Strauss & Sadler, 1989; Roberts &
Solow, 2003), frequentist persistence tests (Solow, 1993a, 1993b; Burgman,
Grimson & Ferson, 1995; Solow & Roberts, 2003; Solow, 2005; McInerny,
Roberts, Davy & Cribb, 2006; Jarić & Ebenhard, 2010), Bayesian models
(Rout, Salomon & McCarthy, 2009; Caley & Barry, 2014), methods for
sightings of uncertain reliability (Thompson et al., 2013; Jarić &
Roberts, 2014; Lee et al., 2014; Brook, Buettel & Jarić, 2019; Kodikara
et al., 2020, 2021), models combining records and
surveys (Thompson et al., 2017, 2019), and confidence intervals on the
end-points of fossil ranges (Marshall, 1994, 1997; Weiss & Marshall,
1999). Every method is tested against the published examples of its
source p [...truncated...]
Author: Rodrigo Fonseca Villa [aut, cre]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>
Diff between EDE versions 0.2.0 dated 2026-09-21 and 0.3.0 dated 2026-10-31
DESCRIPTION | 41 ++-- MD5 | 147 ++++++++++----- NAMESPACE | 21 ++ NEWS.md | 113 +++++++++++ R/brook2019.R |only R/burgman1995.R | 222 +++++++++++++++++------ R/caley-barry2014.R |only R/compare.R |only R/data.R |only R/ede-estimate.R | 87 +++++++-- R/jaric-roberts2014.R | 58 ++++-- R/jaric2010.R | 56 +++-- R/kodikara2020.R |only R/kodikara2021.R |only R/lee2014.R |only R/marshall1994.R |only R/marshall1997.R |only R/mcinerny2006.R | 91 ++++----- R/ole.R | 35 ++- R/robson1964.R | 17 + R/rout2009.R |only R/solow-roberts2003.R | 40 +--- R/solow1993.R | 237 +++++++++++++++++------- R/solow1993b.R | 159 ++++++++++++---- R/solow2005.R | 46 ++-- R/solow2012.R |only R/strauss1989.R | 167 ++++++++++++++++- R/thompson2013.R |only R/thompson2017.R |only R/thompson2019.R |only R/weiss-marshall1999.R |only README.md | 182 ++++++++++++++----- data |only inst/doc/EDE.R | 12 + inst/doc/EDE.Rmd | 151 +++++++++++++-- inst/doc/EDE.html | 263 +++++++++++++++++++++------ man/brook2019.Rd |only man/burgman1995.Rd | 96 ++++++++-- man/caley_barry2014.Rd |only man/dodo.Rd |only man/ede_compare.Rd |only man/ede_estimate.Rd | 15 + man/extinct_birds.Rd |only man/ferret.Rd |only man/jaric2010.Rd | 45 +++- man/jaric_roberts2014.Rd | 47 +++- man/kodikara2020.Rd |only man/kodikara2021.Rd |only man/lee2014.Rd |only man/marshall1994.Rd |only man/marshall1994_trend.Rd |only man/marshall1997.Rd |only man/mcinerny2006.Rd | 45 ++-- man/monk_seal.Rd |only man/ole.Rd | 27 ++ man/orchid.Rd |only man/robson1964.Rd | 18 + man/rout2009.Rd |only man/rout2009_absences.Rd |only man/solow1993.Rd | 40 +++- man/solow1993_bayes.Rd |only man/solow1993b.Rd | 62 +++++- man/solow2005.Rd | 37 ++- man/solow_roberts2003.Rd | 28 +- man/strauss1989.Rd | 16 + man/strauss1989_bayes.Rd |only man/strauss1989_curve.Rd | 12 - man/thompson2013.Rd |only man/thompson2017.Rd |only man/thompson2019.Rd |only man/weiss_marshall1999.Rd |only man/weiss_marshall1999_prior.Rd |only tests/testthat/test-brook2019.R |only tests/testthat/test-burgman1995.R | 261 ++++++++++++++++++++------- tests/testthat/test-caley-barry2014.R |only tests/testthat/test-compare.R |only tests/testthat/test-edge-cases.R |only tests/testthat/test-jaric-roberts2014.R | 34 +++ tests/testthat/test-jaric2010.R | 112 +++++++---- tests/testthat/test-kodikara2020.R |only tests/testthat/test-kodikara2021.R |only tests/testthat/test-lee2014.R |only tests/testthat/test-marshall1994.R |only tests/testthat/test-marshall1997.R |only tests/testthat/test-mcinerny2006.R | 44 +++- tests/testthat/test-ole.R | 27 +- tests/testthat/test-print.R | 9 tests/testthat/test-rout2009.R |only tests/testthat/test-sighting-data.R | 2 tests/testthat/test-solow-roberts2003.R | 92 +++++---- tests/testthat/test-solow.R | 296 ++++++++++++++++++------------- tests/testthat/test-solow1993-bayes.R |only tests/testthat/test-solow1993b.R | 217 +++++++++++++++------- tests/testthat/test-solow2012.R |only tests/testthat/test-strauss1989.R | 111 +++++++++++ tests/testthat/test-thompson2013.R |only tests/testthat/test-thompson2017.R |only tests/testthat/test-thompson2019.R |only tests/testthat/test-weiss-marshall1999.R |only vignettes/EDE.Rmd | 151 +++++++++++++-- 100 files changed, 2969 insertions(+), 1020 deletions(-)
Title: Backward Joint Model for the Dynamic Prediction of Both
Time-to-Event and Longitudinal Outcomes
Description: Provides tools to fit joint models of multivariate longitudinal data and time-to-event data for dynamic prediction. It allows the joint prediction of both future time-to-event outcomes and future longitudinal outcomes conditional on survival. The models accommodate irregularly measured longitudinal data and competing risks outcomes. The use of the backward joint model enables fast and efficient computation, especially for applications with large sample sizes and many longitudinal variables. Methods without competing risks are described in Shen and Li (2021) <doi:10.1002/sim.9037>, and their extension to competing risks is described in Li et al. (2026) <doi:10.1007/s10985-026-09725-x>.
Author: Wenhao Li [aut, cre],
Liang Li [aut]
Maintainer: Wenhao Li <wenhaoli.jlu@gmail.com>
Diff between BJM versions 0.2.0 dated 2026-09-24 and 0.3.0 dated 2026-10-31
BJM-0.2.0/BJM/R/dynamicPrediction.R |only BJM-0.2.0/BJM/man/dynamicPrediction.Rd |only BJM-0.2.0/BJM/man/print.dynamicPrediction.BJM.Rd |only BJM-0.2.0/BJM/man/print.dynamicPredictionBio.BJM.Rd |only BJM-0.2.0/BJM/man/printBJM.Rd |only BJM-0.2.0/BJM/man/summary.dynamicPrediction.BJM.Rd |only BJM-0.2.0/BJM/man/summary.dynamicPredictionBio.BJM.Rd |only BJM-0.2.0/BJM/tests/testthat/test-dynamicPrediction.R |only BJM-0.3.0/BJM/DESCRIPTION | 18 BJM-0.3.0/BJM/MD5 | 349 ++- BJM-0.3.0/BJM/NAMESPACE | 52 BJM-0.3.0/BJM/NEWS.md | 1014 ++++++++++ BJM-0.3.0/BJM/R/buildRecurrentEpisodes.R |only BJM-0.3.0/BJM/R/calibrationPlot.R |only BJM-0.3.0/BJM/R/checkBandcountConvergence.R | 41 BJM-0.3.0/BJM/R/cifPlot.R |only BJM-0.3.0/BJM/R/cmtPlot.R | 348 +-- BJM-0.3.0/BJM/R/conditionalDT.R | 73 BJM-0.3.0/BJM/R/conditionalDesign.R | 219 +- BJM-0.3.0/BJM/R/conditionalDesignCopula.R |only BJM-0.3.0/BJM/R/conditionalYDT.R | 228 -- BJM-0.3.0/BJM/R/conditionalYDTBio.R | 163 - BJM-0.3.0/BJM/R/conditionalYDTBioCopula.R |only BJM-0.3.0/BJM/R/conditionalYDTCopula.R |only BJM-0.3.0/BJM/R/conditionalYT.R | 126 - BJM-0.3.0/BJM/R/conditionalYTBio.R | 94 BJM-0.3.0/BJM/R/conditionalYTBioCopula.R |only BJM-0.3.0/BJM/R/conditionalYTCopula.R |only BJM-0.3.0/BJM/R/copulaLongitudinal.R |only BJM-0.3.0/BJM/R/dynamicPredictionBio.R | 655 ++++-- BJM-0.3.0/BJM/R/dynamicPredictionBioAll.R |only BJM-0.3.0/BJM/R/dynamicPredictionShared.R | 796 +++++++ BJM-0.3.0/BJM/R/icphFit.R |only BJM-0.3.0/BJM/R/imports.R | 27 BJM-0.3.0/BJM/R/imputeEventTime.R |only BJM-0.3.0/BJM/R/imputeLongitudinal.R |only BJM-0.3.0/BJM/R/longitudinalSub.R | 377 +++ BJM-0.3.0/BJM/R/longitudinalSubVar.R | 168 - BJM-0.3.0/BJM/R/marginalT.R | 108 - BJM-0.3.0/BJM/R/methods.R | 400 ++- BJM-0.3.0/BJM/R/performanceInterval.R |only BJM-0.3.0/BJM/R/performancePlot.R |only BJM-0.3.0/BJM/R/plotMethods.R |only BJM-0.3.0/BJM/R/poolLongitudinalSub.R |only BJM-0.3.0/BJM/R/predictLongitudinal.R |only BJM-0.3.0/BJM/R/predictPlot.R | 170 + BJM-0.3.0/BJM/R/predictRecurrentCount.R |only BJM-0.3.0/BJM/R/predictRisk.R |only BJM-0.3.0/BJM/R/processVariance.R | 51 BJM-0.3.0/BJM/R/riskPlot.R | 203 +- BJM-0.3.0/BJM/R/simulateTrajectory.R |only BJM-0.3.0/BJM/R/spaghettiPlot.R |only BJM-0.3.0/BJM/R/survivalAccessors.R |only BJM-0.3.0/BJM/R/survivalSub.R | 163 + BJM-0.3.0/BJM/R/survivalTrans.R | 20 BJM-0.3.0/BJM/R/validateInputs.R | 242 ++ BJM-0.3.0/BJM/R/woodbury.R |only BJM-0.3.0/BJM/README.md | 28 BJM-0.3.0/BJM/build/vignette.rds |binary BJM-0.3.0/BJM/inst/CITATION |only BJM-0.3.0/BJM/inst/doc/BJM-intro.R | 12 BJM-0.3.0/BJM/inst/doc/BJM-intro.Rmd | 87 BJM-0.3.0/BJM/inst/doc/BJM-intro.html | 139 - BJM-0.3.0/BJM/inst/doc/nonlinear-terms.R |only BJM-0.3.0/BJM/inst/doc/nonlinear-terms.Rmd |only BJM-0.3.0/BJM/inst/doc/nonlinear-terms.html |only BJM-0.3.0/BJM/man/align_ordinal_levels.Rd |only BJM-0.3.0/BJM/man/apply_future_covariates.Rd |only BJM-0.3.0/BJM/man/assert_bandcount.Rd | 2 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Title: Beta-Binomial Models for Immune Cell Frequencies and Power
Calculations
Description: Provides tools to model overdispersed immune cell frequencies using Beta-Binomial generalized linear models.
Originally designed for memory B cells, the framework generalizes to evaluate rare
cellular immune responses across vaccinology, immuno-oncology, and related fields. Includes
method-of-moments dispersion estimation, likelihood ratio testing
across experimental arms, and Monte Carlo simulation to
calculate statistical power and Type I error rates. The methodologies
are directly motivated by the analysis of immunology data in
"Vaccination with mRNA-encoded membrane-anchored HIV envelope trimers
elicited tier 2 neutralizing antibodies in a phase 1 clinical trial"
(Parks et al. 2025) <doi:10.1126/scitranslmed.ady6831>.
Author: Andrew Shin [aut, cre]
Maintainer: Andrew Shin <ashin2@uw.edu>
Diff between BBMBC versions 0.1.0 dated 2026-10-07 and 1.0.1 dated 2026-10-31
DESCRIPTION | 22 +++++++++++----------- MD5 | 3 ++- NEWS.md |only 3 files changed, 13 insertions(+), 12 deletions(-)
Title: Bayesian Quantitative Decision-Making Framework for Binary,
Continuous and Time-to-Event Endpoints
Description: Bayesian quantitative decision-making for proof-of-concept
clinical trials with Go, NoGo and Gray decisions. A study is specified by
its sample sizes, conjugate prior distributions, external data borrowed
through power priors, a concurrent, external, hypothetical or fixed
control group, and a decision criterion based on the posterior or
posterior predictive probability of the treatment effect. The package
computes the decision for observed data, the operating characteristics
of a design under scenarios for the true parameters, the decision
thresholds that control the probabilities of false Go and false NoGo
decisions, and the observed data that lead to each decision. One
or two binary endpoints (Beta-binomial and Dirichlet-multinomial
models), one or two continuous endpoints (Normal-Inverse-chi-squared and
Normal-Inverse-Wishart models) and one time-to-event endpoint evaluated
by the milestone survival probability or the hazard ratio (exponential
model with Gamma priors) are supported, [...truncated...]
Author: Gosuke Homma [aut, cre],
Yusuke Yamaguchi [aut]
Maintainer: Gosuke Homma <my.name.is.gosuke@gmail.com>
Diff between BayesianQDM versions 1.0.0 dated 2026-10-30 and 1.0.1 dated 2026-10-31
DESCRIPTION | 6 MD5 | 124 +++++----- NEWS.md | 6 inst/validation/results/summary.md | 2 man/BayesianQDM-package.Rd | 74 +++--- man/borrow.Rd | 60 ++-- man/cellprob_binary2.Rd | 100 ++++---- man/conduct_tte.Rd | 156 ++++++------ man/criterion_posterior.Rd | 288 +++++++++++------------ man/criterion_predictive.Rd | 222 +++++++++--------- man/data_binary.Rd | 66 ++--- man/data_binary2.Rd | 78 +++--- man/data_continuous.Rd | 70 ++--- man/data_continuous2.Rd | 74 +++--- man/data_tte.Rd | 84 +++--- man/design_binary.Rd | 270 +++++++++++----------- man/design_binary2.Rd | 280 +++++++++++------------ man/design_continuous.Rd | 362 ++++++++++++++--------------- man/design_continuous2.Rd | 330 +++++++++++++-------------- man/design_tte.Rd | 450 ++++++++++++++++++------------------- man/format.qdm_borrow.Rd | 50 ++-- man/format.qdm_boundary.Rd | 82 +++--- man/format.qdm_calibration.Rd | 66 ++--- man/format.qdm_conduct.Rd | 48 +-- man/format.qdm_criterion.Rd | 50 ++-- man/format.qdm_data.Rd | 48 +-- man/format.qdm_decision.Rd | 60 ++-- man/format.qdm_design.Rd | 60 ++-- man/format.qdm_hypothetical.Rd | 48 +-- man/format.qdm_prior.Rd | 48 +-- man/hypothetical.Rd | 114 ++++----- man/pbetabinomdiff.Rd | 120 ++++----- man/pbetadiff.Rd | 126 +++++----- man/phazardratio.Rd | 116 ++++----- man/plot.qdm_boundary.Rd | 158 ++++++------ man/plot.qdm_calibration.Rd | 124 +++++----- man/plot.qdm_oc.Rd | 292 ++++++++++++------------ man/print.qdm_borrow.Rd | 44 +-- man/print.qdm_boundary.Rd | 90 +++---- man/print.qdm_calibration.Rd | 66 ++--- man/print.qdm_conduct.Rd | 44 +-- man/print.qdm_criterion.Rd | 46 +-- man/print.qdm_data.Rd | 44 +-- man/print.qdm_decision.Rd | 56 ++-- man/print.qdm_design.Rd | 58 ++-- man/print.qdm_hypothetical.Rd | 44 +-- man/print.qdm_oc.Rd | 60 ++-- man/print.qdm_prior.Rd | 44 +-- man/prior_beta.Rd | 64 ++--- man/prior_dirichlet.Rd | 82 +++--- man/prior_gamma.Rd | 80 +++--- man/prior_niw.Rd | 82 +++--- man/prior_nix.Rd | 84 +++--- man/prior_vague.Rd | 64 ++--- man/psurvdiff.Rd | 140 +++++------ man/ptdiff.Rd | 192 +++++++-------- man/qdm_boundary.Rd | 372 +++++++++++++++--------------- man/qdm_calibrate.Rd | 210 ++++++++--------- man/qdm_decide.Rd | 206 ++++++++-------- man/qdm_oc.Rd | 318 +++++++++++++------------- man/qdm_regions.Rd | 96 +++---- man/rdirichlet.Rd | 74 +++--- src/regions_continuous2.cpp | 7 63 files changed, 3695 insertions(+), 3684 deletions(-)
Title: Stress-Test a Pre-Specified Mixed Model for Repeated Measures
Description: Refits one pre-specified mixed model for repeated measures (MMRM)
under families of data and analytic perturbations (covariance structure,
degrees-of-freedom method and variance estimator, covariate set, analysis
population, alternative analysis data sets, leave-one-out deletions, crossed
specification grids, re-randomisation tests, delta-adjusted and
reference-based multiple imputation, and alternative estimators) and judges
every refit against the pre-specified estimate, confidence interval and
p-value. Classifies the result as robust, sensitive or fragile, with a
separate flag for marginal significance, and estimates by simulation the
probability that a planned design gives a significant and robust result.
Fitting uses 'mmrm' (Sabanes Bove et al., 2024,
<https://openpharma.github.io/mmrm/>) with 'SAS' 'PROC MIXED' conventions
for the least-squares-mean contrast,
Kenward-Roger adjustment and the corrected Akaike criterion. Reference-based
multiple imputation follows Carpenter, [...truncated...]
Author: Adam Sullivan [aut, cre, cph] ,
Nathan Hogan [ctb] ,
Capricor Therapeutics [fnd]
Maintainer: Adam Sullivan <asullivan@capricor.com>
Diff between ballast versions 0.6.1 dated 2026-10-30 and 0.7.4 dated 2026-10-31
DESCRIPTION | 9 +-- MD5 | 104 +++++++++++++++++++++----------------- NAMESPACE | 6 ++ NEWS.md | 52 +++++++++++++++++++ R/calibrate.R | 9 ++- R/census.R | 80 +++++++++++++++++++---------- R/deliverables.R | 6 +- R/design.R | 9 +-- R/direction.R |only R/display.R |only R/estimator.R | 19 +++++- R/families.R | 2 R/fit.R | 22 +++++--- R/fragility.R | 67 ++++++++++++++++-------- R/html.R | 1 R/mi.R | 6 +- R/path.R |only R/plan.R | 29 ++++++---- R/plot.R | 12 ++-- R/plots.R | 92 ++++++++++++++++++++++++--------- R/reference.R | 55 +++++++++++++++----- R/sap.R | 4 - R/simulate_rare.R |only R/standard.R | 10 ++- R/swarm.R | 34 +----------- README.md | 23 ++++++-- inst/CITATION | 4 - inst/doc/interpreting.Rmd | 8 +- inst/doc/interpreting.html | 13 ++-- inst/doc/missing-data.html | 12 ++-- inst/doc/quickstart.html | 71 +++++++++++++------------ inst/templates/sap_stress_test.md | 10 ++- man/path_changes.Rd |only man/plot.stress_census.Rd | 2 man/plot_forest.Rd |only man/plot_pcdf.Rd | 2 man/plot_pcurve.Rd | 19 +++++- man/plot_pstrip.Rd | 25 ++++++++- man/plot_swarm.Rd | 70 ++++++++++++++++--------- man/simulate_rare_trial.Rd |only man/standard_plan.Rd | 8 +- man/stress_calibrate.Rd | 5 + man/stress_census.Rd | 5 + man/stress_design.Rd | 5 + man/stress_direction.Rd |only man/stress_estimator.Rd | 9 ++- man/stress_fit.Rd | 3 - man/stress_fragility.Rd | 32 ++++++++--- man/stress_path.Rd |only man/stress_plan.Rd | 6 +- man/stress_reference.Rd | 13 ++++ man/stress_tipping.Rd | 4 + man/stress_verdict.Rd | 32 ++++++++--- man/summary.stress_census.Rd | 6 +- tests/testthat/test-plots.R | 36 +++++++++++++ tests/testthat/test-v07.R |only tests/testthat/test-v073.R |only tests/testthat/test-v074.R |only vignettes/interpreting.Rmd | 8 +- 59 files changed, 718 insertions(+), 341 deletions(-)
Title: Command Line Optional and Positional Argument Parser
Description: A command line parser to
be used with 'Rscript' to write "#!" shebang scripts that gracefully
accept positional and optional arguments and automatically generate usage.
Author: Trevor L. Davis [aut, cre] ,
Allen Day [ctb] ,
Python Software Foundation [ctb] ,
Paul Newell [ctb]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between argparse versions 2.3.1 dated 2025-10-08 and 2.3.3 dated 2026-10-31
DESCRIPTION | 8 - MD5 | 19 +- NEWS.md | 9 + R/argparse.R | 319 +++++++++++++++++++++++++++++++++++------ build/vignette.rds |binary inst/doc/argparse.html | 60 +++++-- man/ArgumentGroup.Rd |only man/ArgumentParser.Rd | 13 + man/Group.Rd |only man/MutuallyExclusiveGroup.Rd |only man/Parser.Rd |only man/Subparsers.Rd |only tests/testthat/test-argparse.R | 56 +++++++ 13 files changed, 411 insertions(+), 73 deletions(-)
Title: Panel Quantile Autoregressive Distributed Lag Model
Description: Estimation of Panel Quantile Autoregressive Distributed Lag
(PQARDL) models that combine panel ARDL methodology with quantile
regression. Supports Pooled Mean Group (PMG), Mean Group (MG), and
Dynamic Fixed Effects (DFE) estimators across multiple quantiles.
Computes long-run cointegrating parameters, error correction term speed
of adjustment, half-life of adjustment, and performs Wald tests for
parameter equality across quantiles. Based on the econometric frameworks
of Pesaran, Shin, and Smith (1999) <doi:10.1080/01621459.1999.10474156>,
Cho, Kim, and Shin (2015) <doi:10.1016/j.jeconom.2015.05.003>, and
Bildirici and Kayikci (2022).
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between xtpqardl versions 1.0.3 dated 2026-09-28 and 1.0.5 dated 2026-10-31
DESCRIPTION | 10 MD5 | 30 - NAMESPACE | 32 - NEWS.md | 34 + R/methods.R | 42 + R/wald_test.R | 313 ++++++++--- R/xtpqardl-package.R | 4 R/xtpqardl.R | 912 +++++++++++++++++++++++++++------- build/partial.rdb |binary inst/CITATION | 2 inst/validation |only man/compute_irf.Rd | 7 man/wald_test.Rd | 82 ++- man/xtpqardl-package.Rd | 4 man/xtpqardl.Rd | 257 +++++++-- tests/testthat/test-fixes-1-0-5.R |only tests/testthat/test-wald-pmg-inputs.R |only 17 files changed, 1387 insertions(+), 342 deletions(-)
Title: Durbin-Hausman Panel Cointegration Tests
Description: Implements the Durbin-Hausman panel cointegration tests of
Westerlund (2008) <doi:10.1002/jae.967>. The tests are robust to
cross-sectional dependence through common factor extraction using
principal components. Provides both group-mean (DHg) and panel (DHp)
test statistics with automatic factor number selection via information
criteria.
Author: Muhammad Alkhalaf [aut, cre, cph] ,
Joakim Westerlund [ctb]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between xtdhcoint versions 1.0.3 dated 2026-10-01 and 1.0.5 dated 2026-10-31
DESCRIPTION | 8 MD5 | 26 +- NAMESPACE | 3 NEWS.md | 33 ++ R/methods.R | 11 R/xtdhcoint-package.R | 7 R/xtdhcoint.R | 572 ++++++++++++++++++++++++++++++----------------- README.md | 12 build/partial.rdb |binary inst/CITATION | 4 inst/validation |only man/xtdhcoint-package.Rd | 4 man/xtdhcoint.Rd | 147 +++++++++--- tests |only 14 files changed, 578 insertions(+), 249 deletions(-)
Title: Panel Data Pre-Testing and Diagnostic Suite
Description: Pre-testing and diagnostic tools for panel data analysis.
Researchers should run these tests before any panel regression to
verify modelling assumptions. The package implements: (1) the Hsiao
(2014, <ISBN:978-1-107-65763-2>) homogeneity F-tests (F1/F2/F3),
Swamy (1970) <doi:10.2307/1913012> parameter heterogeneity test, and
Pesaran (2004) <doi:10.2139/ssrn.572504> cross-sectional dependence
test via xtpretest(); (2) missing-data detection, mechanism testing,
and imputation for unbalanced panels via xtmispanel(); (3)
quantile-regression cross-sectional dependence tests (T_tau and
T-tilde_tau statistics) of Demetrescu, Hosseinkouchack and Rodrigues
(2023) via xtcsdq(); and (4) the
panel quantile-regression slope homogeneity S-hat and D-hat
statistics of Galvao, Juhl, Montes-Rojas and Olmo (2017)
<doi:10.1093/jjfinec/nbx016> via xtqsh(). Together these
tests address three fundamental pre-testing questions: (i) are
slopes homogeneous? (ii) is there cross-sectional d [...truncated...]
Author: Muhammad Abdullah Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Abdullah Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between paneltests versions 1.0.6 dated 2026-09-28 and 1.0.8 dated 2026-10-31
DESCRIPTION | 9 MD5 | 31 +- NAMESPACE | 4 NEWS.md | 39 +++ R/xtcsdq.R | 2 R/xtkao.R |only R/xtpedroni.R |only R/xtpretest.R | 360 +++++++++++++++++++++++++-------- R/xtqsh.R | 4 build/partial.rdb |binary inst/CITATION | 2 inst/validation |only man/xtkao.Rd |only man/xtpedroni.Rd |only man/xtpretest.Rd | 111 ++++++++-- tests/testthat/test-xtmispanel.R | 2 tests/testthat/test-xtpedroni-xtkao.R |only tests/testthat/test-xtpretest-robust.R |only tests/testthat/test-xtpretest.R | 85 +++++++ 19 files changed, 525 insertions(+), 124 deletions(-)
Title: Unconstrained Numerical Optimization Algorithms
Description: Optimization algorithms implemented in R, including
conjugate gradient (CG), Broyden-Fletcher-Goldfarb-Shanno (BFGS) and the
limited memory BFGS (L-BFGS) methods. Most internal parameters can be set
through the call interface. The solvers hold up quite well for
higher-dimensional problems.
Author: James Melville [aut, cre]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between mize versions 0.2.5 dated 2026-02-09 and 0.3.0 dated 2026-10-31
mize-0.2.5/mize/tests/testthat/test_minfunc_armijo.R |only mize-0.2.5/mize/tests/testthat/test_minfunc_wolfe.R |only mize-0.2.5/mize/tests/testthat/test_mizer.R |only mize-0.2.5/mize/tests/testthat/test_polation.R |only mize-0.3.0/mize/DESCRIPTION | 19 mize-0.3.0/mize/MD5 | 163 mize-0.3.0/mize/NAMESPACE | 1 mize-0.3.0/mize/NEWS.md | 97 mize-0.3.0/mize/R/adaptive_restart.R | 38 mize-0.3.0/mize/R/bracket_zoom.R |only mize-0.3.0/mize/R/convergence.R | 137 mize-0.3.0/mize/R/gradient.R | 1094 ---- mize-0.3.0/mize/R/gradient_cg.R |only mize-0.3.0/mize/R/gradient_check.R |only mize-0.3.0/mize/R/gradient_newton.R |only mize-0.3.0/mize/R/gradient_quasi_newton.R |only mize-0.3.0/mize/R/gradient_requirements.R |only mize-0.3.0/mize/R/hager_zhang.R | 1363 +++--- mize-0.3.0/mize/R/learning_rate.R | 59 mize-0.3.0/mize/R/life_cycle.R | 130 mize-0.3.0/mize/R/line_search.R |only mize-0.3.0/mize/R/mize.R | 2230 ++-------- mize-0.3.0/mize/R/mize_convergence.R |only mize-0.3.0/mize/R/mize_factory.R |only mize-0.3.0/mize/R/mize_state.R |only mize-0.3.0/mize/R/momentum.R | 58 mize-0.3.0/mize/R/more_thuente.R | 1468 ++---- mize-0.3.0/mize/R/nesterov.R | 45 mize-0.3.0/mize/R/optimize.R | 549 +- mize-0.3.0/mize/R/polation.R | 257 - mize-0.3.0/mize/R/rasmussen.R | 516 +- mize-0.3.0/mize/R/schmidt.R | 1463 ++---- mize-0.3.0/mize/R/step_size.R | 288 - mize-0.3.0/mize/R/util.R | 70 mize-0.3.0/mize/R/validate.R | 6 mize-0.3.0/mize/R/wolfe.R | 1290 ++--- mize-0.3.0/mize/build/vignette.rds |binary mize-0.3.0/mize/inst/doc/convergence.R | 380 + mize-0.3.0/mize/inst/doc/convergence.Rmd | 738 ++- mize-0.3.0/mize/inst/doc/convergence.html | 822 ++- mize-0.3.0/mize/inst/doc/methods.R |only mize-0.3.0/mize/inst/doc/methods.Rmd |only mize-0.3.0/mize/inst/doc/methods.html |only mize-0.3.0/mize/inst/doc/mize.R | 363 - mize-0.3.0/mize/inst/doc/mize.Rmd | 1093 +--- mize-0.3.0/mize/inst/doc/mize.html | 1107 +--- mize-0.3.0/mize/inst/doc/mmds.R | 512 +- mize-0.3.0/mize/inst/doc/mmds.Rmd | 763 ++- mize-0.3.0/mize/inst/doc/mmds.html | 642 +- mize-0.3.0/mize/inst/doc/stateful.R | 585 ++ mize-0.3.0/mize/inst/doc/stateful.Rmd | 940 ++-- mize-0.3.0/mize/inst/doc/stateful.html | 1173 +++-- mize-0.3.0/mize/inst/extdata |only mize-0.3.0/mize/man/check_mize_convergence.Rd | 122 mize-0.3.0/mize/man/check_mize_gradient.Rd |only mize-0.3.0/mize/man/make_mize.Rd | 569 +- mize-0.3.0/mize/man/mize.Rd | 1709 ++++--- mize-0.3.0/mize/man/mize_init.Rd | 242 - mize-0.3.0/mize/man/mize_step.Rd | 213 mize-0.3.0/mize/man/mize_step_summary.Rd | 200 mize-0.3.0/mize/tests/testthat/helper_util.R | 84 mize-0.3.0/mize/tests/testthat/test_api.R | 735 ++- mize-0.3.0/mize/tests/testthat/test_bold_driver_diagnostics.R |only mize-0.3.0/mize/tests/testthat/test_bracket_zoom.R |only mize-0.3.0/mize/tests/testthat/test_budgets.R |only mize-0.3.0/mize/tests/testthat/test_cg.R | 354 - mize-0.3.0/mize/tests/testthat/test_cg_arithmetic.R |only mize-0.3.0/mize/tests/testthat/test_curvature_counts.R |only mize-0.3.0/mize/tests/testthat/test_diagnostics.R |only mize-0.3.0/mize/tests/testthat/test_gradient_check.R |only mize-0.3.0/mize/tests/testthat/test_hager_zhang.R | 865 +++ mize-0.3.0/mize/tests/testthat/test_hz_safeguard.R |only mize-0.3.0/mize/tests/testthat/test_line_search.R |only mize-0.3.0/mize/tests/testthat/test_line_search_conditions.R |only mize-0.3.0/mize/tests/testthat/test_line_search_traces.R |only mize-0.3.0/mize/tests/testthat/test_loop_api.R | 403 + mize-0.3.0/mize/tests/testthat/test_mize.R |only mize-0.3.0/mize/tests/testthat/test_mmds.R | 57 mize-0.3.0/mize/tests/testthat/test_momentum.R | 4 mize-0.3.0/mize/tests/testthat/test_more_thuente.R | 826 +++ mize-0.3.0/mize/tests/testthat/test_nesterov.R | 183 mize-0.3.0/mize/tests/testthat/test_newton.R | 192 mize-0.3.0/mize/tests/testthat/test_optimizer_diagnostics.R |only mize-0.3.0/mize/tests/testthat/test_optimizer_invariants.R |only mize-0.3.0/mize/tests/testthat/test_progress_storage.R |only mize-0.3.0/mize/tests/testthat/test_quadposdef.R | 21 mize-0.3.0/mize/tests/testthat/test_rasmussen.R | 440 + mize-0.3.0/mize/tests/testthat/test_rasmussen_cg.R | 229 - mize-0.3.0/mize/tests/testthat/test_regressions.R |only mize-0.3.0/mize/tests/testthat/test_scalar_inverse_hessian.R |only mize-0.3.0/mize/tests/testthat/test_schmidt_armijo.R |only mize-0.3.0/mize/tests/testthat/test_schmidt_wolfe.R |only mize-0.3.0/mize/tests/testthat/test_stable_norms.R |only mize-0.3.0/mize/tests/testthat/test_state_hooks.R |only mize-0.3.0/mize/tests/testthat/test_tn.R | 213 mize-0.3.0/mize/tests/testthat/test_validation.R |only mize-0.3.0/mize/tests/testthat/test_zero_momentum.R |only mize-0.3.0/mize/vignettes/articles |only mize-0.3.0/mize/vignettes/convergence.Rmd | 738 ++- mize-0.3.0/mize/vignettes/methods.Rmd |only mize-0.3.0/mize/vignettes/mize.Rmd | 1093 +--- mize-0.3.0/mize/vignettes/mmds.Rmd | 763 ++- mize-0.3.0/mize/vignettes/stateful.Rmd | 940 ++-- 103 files changed, 17003 insertions(+), 14651 deletions(-)
Title: Multiple Granger Causality Tests for Time Series and Panel Data
Description: Comprehensive suite of Granger causality tests for time series
and panel data. For time series: Toda-Yamamoto (1995)
<doi:10.1016/0304-4076(94)01616-8>, Fourier-based tests with single
frequency (Enders and Jones, 2016) <doi:10.1515/snde-2014-0101> and
cumulative frequencies (Nazlioglu et al., 2019)
<doi:10.1080/1540496X.2018.1434072>, quantile causality tests (Cai et al.,
2023) <doi:10.1016/j.frl.2023.104327>, and Bootstrap Fourier Granger
Causality in Quantiles (Cheng et al., 2021)
<doi:10.1007/s12076-020-00263-0>. For panel data: Panel Fourier
Toda-Yamamoto (Yilanci and Gorus, 2020)
<doi:10.1007/s11356-020-10092-9> and Panel Quantile Causality tests
(Wang and Nguyen, 2022) <doi:10.1080/1331677X.2021.1948436>, as well as
Group-Mean and Pooled Fully Modified OLS estimators for panel
cointegrating polynomial regressions (Wagner and Reichold, 2023)
<doi:10.1080/07474938.2023.2178141>. All tests include bootstrap
inference for robust p-valu [...truncated...]
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between caustests versions 1.1.4 dated 2026-09-30 and 1.1.7 dated 2026-10-31
DESCRIPTION | 7 MD5 | 35 - NEWS.md | 36 + R/caustests-package.R | 16 R/caustests.R | 102 ++- R/data.R | 2 R/xtpcaus.R | 747 ++++++++++++++++------ R/xtpcmg.R | 6 README.md | 14 build/partial.rdb |binary inst/CITATION | 2 inst/validation |only man/caustests-package.Rd | 16 man/caustests.Rd | 22 man/caustests_data.Rd | 2 man/xtpcaus.Rd | 173 ++++- man/xtpcmg.Rd | 2 tests/testthat/test-caustests-quantreg-warnings.R |only tests/testthat/test-xtpcaus-dh.R |only 19 files changed, 911 insertions(+), 271 deletions(-)
Title: Comprehensive ARDL: Panel, Bootstrap and Fourier Methods
Description: A unified framework for Autoregressive Distributed Lag (ARDL) modeling
and cointegration analysis. Implements Panel ARDL with Pooled Mean Group (PMG),
Mean Group (MG), and Dynamic Fixed Effects (DFE) estimators following
Pesaran, Shin and Smith (1999) <doi:10.1080/01621459.1999.10474156>.
Provides the bounds test of Pesaran, Shin and Smith (2001)
<doi:10.1002/jae.616> with the critical values of Kripfganz and Schneider
(2020) <doi:10.1111/obes.12377> and with recursive bootstrap critical
values following Bertelli, Vacca and Zoia (2022)
<doi:10.1016/j.econmod.2022.105987> and McNown, Sam and Goh (2018)
<doi:10.1080/00036846.2017.1366643>. Includes Quantile Nonlinear ARDL
(QNARDL) combining distributional and asymmetric effects based on Shin, Yu
and Greenwood-Nimmo (2014) <doi:10.1007/978-1-4899-8008-3_9>, Fourier ARDL
for modeling smooth structural breaks following Enders and Lee (2012)
<doi:10.1016/j.econlet.2012.04.081>, and Fourier (bootstrap [...truncated...]
Author: Muhammad Abdullah Alkhalaf [aut, cre] ,
Yeleazar Levchenko [ctb] )
Maintainer: Muhammad Abdullah Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between ardlverse versions 2.1.0 dated 2026-10-10 and 2.1.2 dated 2026-10-31
DESCRIPTION | 8 - MD5 | 13 + NEWS.md | 18 ++ R/panel_ardl.R | 273 ++++++++++++++++++++++++++++++++++----- README.md | 12 + inst/validation |only man/hausman_test.Rd | 128 +++++++++++++++++- tests/testthat/test-panel_ardl.R | 212 +++++++++++++++++++++++++++++- 8 files changed, 611 insertions(+), 53 deletions(-)
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol
for R. The Language Server protocol is used by an editor client to
integrate features like auto completion. See
<https://microsoft.github.io/language-server-protocol/> for details.
Author: Randy Lai [aut, cre],
Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.3.20 dated 2026-09-24 and 0.3.21 dated 2026-10-31
DESCRIPTION | 23 MD5 | 312 +++-- NEWS.md | 228 +++ R/analysis-cache.R |only R/backend-cli.R |only R/backend-lintr.R |only R/backend-styler.R |only R/backends.R |only R/call_hierarchy.R | 4 R/capabilities.R | 101 + R/class_index.R |only R/code-action-documentation.R |only R/code_action.R | 46 R/code_lens.R | 4 R/color.R | 32 R/completion.R | 549 ++++++++- R/definition.R | 72 + R/diagnostics.R | 281 +--- R/document.R | 583 ++++++++- R/folding.R | 61 - R/formatting.R | 532 +-------- R/handlers-general.R | 21 R/handlers-langfeatures.R | 239 +++- R/handlers-textsync.R | 37 R/handlers-workspace.R | 110 + R/highlight.R | 42 R/hover.R | 52 R/index.R | 1196 ++++++++++++++++++-- R/index_worker.R |only R/inlay_hint.R | 220 +++ R/inline_value.R | 6 R/languagebase.R | 57 R/languageclient.R | 28 R/languageserver.R | 714 +++++++++++- R/link.R | 8 R/linked_editing.R | 81 - R/member-analysis.R |only R/member-completion.R |only R/member-extraction.R |only R/member-inference.R |only R/member-metadata.R |only R/member-providers.R |only R/member-r6.R |only R/member-s4.R |only R/member-s7.R |only R/member-source.R |only R/namespace.R | 85 + R/navigation.R |only R/outline.R |only R/package-cache.R |only R/protocol.R | 1 R/provider_index.R | 19 R/refactor.R | 148 ++ R/references.R | 107 + R/rename.R | 3 R/s3-dispatch.R |only R/s3-inference.R |only R/s3-metadata.R |only R/s3-providers.R |only R/section.R | 63 - R/selection.R | 22 R/semantic.R | 25 R/settings.R | 5 R/signature.R | 120 +- R/symbol.R | 94 + R/task.R | 231 +++ R/text-document-content.R |only R/type_hierarchy.R | 328 +---- R/utils.R | 139 ++ R/workspace.R | 673 ++++++++++- R/zzz.R | 7 README.md | 260 ++++ inst/benchmarks/README.md | 151 ++ inst/benchmarks/member-budget.R |only inst/benchmarks/member-metadata.R |only inst/benchmarks/package-cache.R |only inst/benchmarks/s3-dispatch.R |only inst/benchmarks/workspace-loading.py |only inst/examples |only src/completion.c | 150 ++ src/completion.h | 5 src/fsm.c | 10 src/json.c | 4 src/languageserver.c | 32 src/member.c |only src/member.h |only src/message_buffer.c |only src/message_buffer.h |only src/navigation.c | 403 ++++++ src/navigation.h | 5 src/parse_xml.c |only src/parse_xml.h |only src/provider_index.c | 144 +- src/search.c | 167 ++ src/search.h | 4 src/semantic.h | 4 src/signature.c | 669 ++++++++++- src/signature.h | 6 src/stdin.c |only src/stdin.h |only src/token.c | 85 + src/token.h | 2 tests/testthat.R | 34 tests/testthat/helper-provider.R | 10 tests/testthat/helper-utils.R | 46 tests/testthat/test-analysis-cache.R |only tests/testthat/test-backends-cli.R |only tests/testthat/test-backends.R |only tests/testthat/test-cache.R | 93 + tests/testthat/test-class-scope-completion.R |only tests/testthat/test-code-action-documentation.R |only tests/testthat/test-code-action.R | 48 tests/testthat/test-code-lens.R | 5 tests/testthat/test-color.R | 18 tests/testthat/test-completion-arguments.R |only tests/testthat/test-completion-member-context.R |only tests/testthat/test-completion-metadata.R |only tests/testthat/test-completion-resolve.R |only tests/testthat/test-completion.R | 1226 --------------------- tests/testthat/test-definition.R | 11 tests/testthat/test-diagnostics-configuration.R | 84 + tests/testthat/test-document-core.R | 152 ++ tests/testthat/test-formatting-background.R | 73 - tests/testthat/test-formatting-capabilities.R |only tests/testthat/test-formatting.R | 2 tests/testthat/test-handlers-general.R |only tests/testthat/test-handlers-langfeatures.R | 150 ++ tests/testthat/test-handlers-textsync.R | 51 tests/testthat/test-hover.R | 21 tests/testthat/test-index-discovery-limits.R |only tests/testthat/test-index-discovery.R |only tests/testthat/test-index-policy.R |only tests/testthat/test-index-request-classification.R |only tests/testthat/test-index-request-snapshots.R |only tests/testthat/test-index-review.R |only tests/testthat/test-index-symbol-snapshots.R |only tests/testthat/test-index-worker.R |only tests/testthat/test-index.R | 49 tests/testthat/test-inlay-hint-pipes.R |only tests/testthat/test-inlay-hint.R | 489 ++++++++ tests/testthat/test-inline-value.R | 3 tests/testthat/test-intelligence-performance.R | 4 tests/testthat/test-languagebase.R | 220 +++ tests/testthat/test-languageserver-core.R | 312 +++++ tests/testthat/test-link.R | 1 tests/testthat/test-linked-editing.R | 38 tests/testthat/test-lintr.R | 327 +++++ tests/testthat/test-literate.R | 3 tests/testthat/test-lsp-3-18.R | 1 tests/testthat/test-member-analysis.R |only tests/testthat/test-member-binding-cache.R |only tests/testthat/test-member-completion.R |only tests/testthat/test-member-external-subset.R |only tests/testthat/test-member-generic-suggestions.R |only tests/testthat/test-member-inference-review.R |only tests/testthat/test-member-lazydata.R |only tests/testthat/test-member-namespace-review.R |only tests/testthat/test-member-namespace.R |only tests/testthat/test-member-ownership.R |only tests/testthat/test-member-package-recovery.R |only tests/testthat/test-member-providers.R |only tests/testthat/test-member-r6-review.R |only tests/testthat/test-member-recovery-batches.R |only tests/testthat/test-member-return-dispatch.R |only tests/testthat/test-member-reuse-budget.R |only tests/testthat/test-member-s4.R |only tests/testthat/test-member-s7.R |only tests/testthat/test-member-source.R |only tests/testthat/test-native-utilities.R | 111 + tests/testthat/test-navigation-index.R | 370 ++++++ tests/testthat/test-package-metadata-cache.R |only tests/testthat/test-parse-xml.R |only tests/testthat/test-performance-index.R | 44 tests/testthat/test-pipe-providers.R |only tests/testthat/test-polars-dataframe-completion.R |only tests/testthat/test-provider-readiness.R |only tests/testthat/test-r6-symbol-providers.R |only tests/testthat/test-range-index.R | 45 tests/testthat/test-refactor.R | 513 ++++++++ tests/testthat/test-references.R | 67 + tests/testthat/test-rename.R | 19 tests/testthat/test-s3-dispatch.R |only tests/testthat/test-search.R | 38 tests/testthat/test-selection.R | 27 tests/testthat/test-semantic-tokens.R | 62 + tests/testthat/test-signature-null.R |only tests/testthat/test-signature-pipes.R |only tests/testthat/test-signature.R | 253 ++++ tests/testthat/test-source-readiness.R |only tests/testthat/test-symbol-edits.R |only tests/testthat/test-symbol-tree.R |only tests/testthat/test-symbol.R | 10 tests/testthat/test-task-callbacks.R |only tests/testthat/test-task-scheduling.R |only tests/testthat/test-task-supersession.R | 46 tests/testthat/test-text-document-content.R |only tests/testthat/test-type-hierarchy-parsing.R | 65 + tests/testthat/test-type-hierarchy.R | 68 + tests/testthat/test-utils.R | 22 tests/testthat/test-workspace-core.R | 143 ++ tests/testthat/test-workspace-lifecycle.R |only tests/testthat/test-workspace-loading.R |only tests/testthat/test-workspace-progress.R |only tests/testthat/test-workspace.R | 10 tools |only 205 files changed, 11869 insertions(+), 3325 deletions(-)
More information about languageserver at CRAN
Permanent link
Title: Tidy Access to Mongolian Official Statistics and Metadata
Description: A 'tidyverse'-friendly client for the public statistical services of
the National Statistics Office of Mongolia <https://data.1212.mn/>. Discover
tables and their dimensions, and fetch statistical data as 'tibble' data frames with
English or Mongolian labels. Periods are reported by their labels and
can be selected in any of the office's period formats, tables that have
moved within the catalogue are found automatically, and large requests
are split to stay within the server's limits. Source provenance and raw
observation symbols support reproducible exports. Experimental clients
provide access to the public data and metadata portals, including official
definitions, collection forms, classifications, and reviewed indicator
queries. Maps and joins by
statistical code are provided by the companion package 'mongolmaps'.
Author: Temuulen Enebish [aut, cre, cph],
National Statistics Office of Mongolia [cph]
Maintainer: Temuulen Enebish <temuulen@gmail.com>
Diff between mongolstats versions 0.2.0 dated 2026-07-09 and 0.4.0 dated 2026-10-31
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mongolstats-0.4.0/mongolstats/man/nso_citation.Rd |only mongolstats-0.4.0/mongolstats/man/nso_classification.Rd |only mongolstats-0.4.0/mongolstats/man/nso_data.Rd | 43 mongolstats-0.4.0/mongolstats/man/nso_dim_values.Rd | 59 mongolstats-0.4.0/mongolstats/man/nso_dims.Rd | 7 mongolstats-0.4.0/mongolstats/man/nso_forms.Rd |only mongolstats-0.4.0/mongolstats/man/nso_indicator.Rd |only mongolstats-0.4.0/mongolstats/man/nso_indicator_query.Rd |only mongolstats-0.4.0/mongolstats/man/nso_indicators.Rd |only mongolstats-0.4.0/mongolstats/man/nso_itms.Rd | 42 mongolstats-0.4.0/mongolstats/man/nso_itms_by_sector.Rd | 12 mongolstats-0.4.0/mongolstats/man/nso_latest_periods.Rd |only mongolstats-0.4.0/mongolstats/man/nso_metadata.Rd |only mongolstats-0.4.0/mongolstats/man/nso_metadata_dictionary.Rd |only mongolstats-0.4.0/mongolstats/man/nso_metadata_search.Rd |only mongolstats-0.4.0/mongolstats/man/nso_offline_disable.Rd | 2 mongolstats-0.4.0/mongolstats/man/nso_offline_enable.Rd | 5 mongolstats-0.4.0/mongolstats/man/nso_options.Rd | 71 mongolstats-0.4.0/mongolstats/man/nso_package.Rd | 93 mongolstats-0.4.0/mongolstats/man/nso_period_date.Rd |only mongolstats-0.4.0/mongolstats/man/nso_period_seq.Rd | 10 mongolstats-0.4.0/mongolstats/man/nso_portal_data.Rd |only mongolstats-0.4.0/mongolstats/man/nso_portal_datamarts.Rd |only mongolstats-0.4.0/mongolstats/man/nso_provenance.Rd |only mongolstats-0.4.0/mongolstats/man/nso_rebuild_px_index.Rd | 72 mongolstats-0.4.0/mongolstats/man/nso_related.Rd |only mongolstats-0.4.0/mongolstats/man/nso_search.Rd | 73 mongolstats-0.4.0/mongolstats/man/nso_sectors.Rd | 46 mongolstats-0.4.0/mongolstats/man/nso_subsectors.Rd | 54 mongolstats-0.4.0/mongolstats/man/nso_table_info.Rd |only mongolstats-0.4.0/mongolstats/man/nso_table_meta.Rd | 6 mongolstats-0.4.0/mongolstats/man/nso_table_periods.Rd | 25 mongolstats-0.4.0/mongolstats/man/nso_tables.Rd |only mongolstats-0.4.0/mongolstats/man/nso_value_status.Rd |only 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|only mongolstats-0.4.0/mongolstats/tests/testthat/_snaps/validate.md |only mongolstats-0.4.0/mongolstats/tests/testthat/fixtures |only mongolstats-0.4.0/mongolstats/tests/testthat/helper-httptest2.R | 54 mongolstats-0.4.0/mongolstats/tests/testthat/px_data |only mongolstats-0.4.0/mongolstats/tests/testthat/px_dims |only mongolstats-0.4.0/mongolstats/tests/testthat/px_meta |only mongolstats-0.4.0/mongolstats/tests/testthat/px_sectors/px |only mongolstats-0.4.0/mongolstats/tests/testthat/test-cache.R | 101 mongolstats-0.4.0/mongolstats/tests/testthat/test-catalogue.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-config.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-data.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-deprecated.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-endpoints.R | 187 + mongolstats-0.4.0/mongolstats/tests/testthat/test-geography.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-helpers.R | 93 mongolstats-0.4.0/mongolstats/tests/testthat/test-http.R | 240 ++ mongolstats-0.4.0/mongolstats/tests/testthat/test-indicators.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-integration.R | 72 mongolstats-0.4.0/mongolstats/tests/testthat/test-joins.R | 155 + mongolstats-0.4.0/mongolstats/tests/testthat/test-labels.R | 208 - mongolstats-0.4.0/mongolstats/tests/testthat/test-map-selections.R | 13 mongolstats-0.4.0/mongolstats/tests/testthat/test-metadata.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-observations.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-offline.R | 37 mongolstats-0.4.0/mongolstats/tests/testthat/test-options.R | 102 mongolstats-0.4.0/mongolstats/tests/testthat/test-periods.R | 8 mongolstats-0.4.0/mongolstats/tests/testthat/test-portal.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-provenance.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-px-helpers.R | 56 mongolstats-0.4.0/mongolstats/tests/testthat/test-px-locate.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-px-meta.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-quality.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-query.R | 26 mongolstats-0.4.0/mongolstats/tests/testthat/test-recorded-http.R | 25 mongolstats-0.4.0/mongolstats/tests/testthat/test-recorded-search.R | 70 mongolstats-0.4.0/mongolstats/tests/testthat/test-response-json.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-services.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-time.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-validate.R | 20 mongolstats-0.4.0/mongolstats/vignettes/data-provenance.Rmd |only mongolstats-0.4.0/mongolstats/vignettes/discovery.Rmd | 743 +++--- mongolstats-0.4.0/mongolstats/vignettes/environmental-surveillance.Rmd | 1062 ++++------ mongolstats-0.4.0/mongolstats/vignettes/getting-started.Rmd | 646 ++---- mongolstats-0.4.0/mongolstats/vignettes/mapping.Rmd | 586 +++-- mongolstats-0.4.0/mongolstats/vignettes/ub-health-environment.Rmd | 631 ++--- 178 files changed, 10337 insertions(+), 8391 deletions(-)
Title: Multilevel Mediation Analysis
Description: Do multilevel mediation analysis with generalized additive multilevel models. The analysis method is described in Yu and Li (2020), "Third-Variable Effect Analysis with Multilevel Additive Models", PLoS ONE 15(10): e0241072.
Author: Qingzhao Yu [aut, cre],
Bin Li [aut]
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>
Diff between mlma versions 6.3-1 dated 2023-08-29 and 6.4-1 dated 2026-10-31
DESCRIPTION | 29 MD5 | 12 NAMESPACE | 45 R/mlma.r | 7468 +++++++++++++++++++++------------------------ build/vignette.rds |binary inst/doc/MLMAvignette.R | 156 inst/doc/MLMAvignette.html | 1443 ++++---- 7 files changed, 4499 insertions(+), 4654 deletions(-)
Title: Reproducible Data Capsules with Provenance and Fallback
Description: For analyzing published and unpublished tables, from open-data
portals and statistical agencies to a researcher's own data, so that a
result can be traced to the exact data behind it and checked again
afterwards. A 'capsule' records where each source came from, its Secure
Hash Algorithm 256 ('SHA-256') hash, the schema it should have and an
archived copy in the Internet Archive 'Wayback Machine'
('web.archive.org'); sources are found through the Comprehensive
Knowledge Archive Network ('CKAN', 'ckan.org'). Run again, a capsule
says whether each source still matches and, if it does not, how its
distribution moved (Kolmogorov-Smirnov, chi-square, population stability
index and 'Benford' first-digit screens), and when a source cannot be
reached it runs on schema-driven synthetic data that is marked as such.
Capsules can be signed with keyed hashes ('HMAC-SHA-256', RFC 2104) or
with the post-quantum signature standards 'ML-DSA' (FIPS 204), 'SLH-DSA'
(FIPS 205) and 'XMSS' (RFC 8391), implem [...truncated...]
Author: Vansh Singh Ruhela [aut, cre]
Maintainer: Vansh Singh Ruhela <vsruhela@proton.me>
Diff between rmoriebricklayer versions 1.0.2 dated 2026-10-22 and 1.0.3 dated 2026-10-30
rmoriebricklayer-1.0.2/rmoriebricklayer/R/srr-stats-standards.R |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/admits.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/adp.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/adpcnts.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/agentbndl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/agestd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/aipwcf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/alos.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/anltab.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/arccap.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/arcfind.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/arcget.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/asciifb.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/attrfrac.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/audcats.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/b64.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/bacondcmp.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/baltab.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/bandsens.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/bandvals.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/benfordtst.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/blcli.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/bldl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/blfetch.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/blpal.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/blprog.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/bufasgn.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/capdeps.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/capenv.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/caseflow.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cblake2b.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cbootmean.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/ccovm.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/ccrc32.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/certchnvrf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/certprs.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cgamcdf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/chgenv.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/chn.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/chnkfile.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/chwkfit.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/chwkjit.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/chwknll.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/chwkres.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/chwksim.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cipw.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/citecps.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/clncolnms.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/clrdcmp.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cmlrisk.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cmom.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cnormlpdf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cnormpdf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cnscwb.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cnsprof.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cnsstd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cnttrnd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/co2fp.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/co2int.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cohtrnd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/commidx.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/concentration.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/connassoc.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cortbl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cpsatst.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cpsbndl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cpschk.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cpsdrft.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cpsfals.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cpspwr.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cpsrfrsh.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cpsrpt.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cpsseal.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cpssign.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cpsvrf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cramerv.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/crank.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/crfpm25.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/crmdens.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/crob.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/csha256.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/csha512.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cspread.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cstat.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/ctrm.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cunif.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cwbscr.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/cwtd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/deccodes.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/declbld.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/dgstobj.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/dispmix.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/dldata.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/dlogin.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/dlogout.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/dmnf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drbggen.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drbgnew.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drbgrsd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drftapp.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drftcal.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drftchisq.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drfthomog.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drfthtml.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drftks.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drftpsi.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drp.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/drvkey.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/dstfit.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/dstn.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/dstntst.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/dtctloc.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/dualcont.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/duprows.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/ebrates.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/envdiff.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/evlrr.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/evstudy.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/expbands.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/expcnts.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/expconcidx.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/explerr.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/exprspplr.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/exptrnd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/falsfam.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/fdl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/fetchvrf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/filedgst.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/fipskey.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/fipskg.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/fipsmu.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/fipssz.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/fnllim.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/fpeqv.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/freqtbl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/frmaud.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/fromjs.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/fylbl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/genexpo.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/ghann.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/grdbin.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/grdlvls.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/grdrcd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/healchg.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/hilltlidx.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/holbal.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/hotpers.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/hqccmpkey.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/hqcdecap.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/hqcencap.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/hqckg.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/hqcsz.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/hurwzeta.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/indgap.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/indiex.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/indtabs.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/infsch.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/inlhist.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/instcli.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/jsgz.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/jsserdoc.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/justice-data.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/kemdecap.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/kemencap.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/kemkg.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/kemsz.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/keyeddgst.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/knoxtst.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/ldgrread.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/lifetbl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/limfrom.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/llmask.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/llmcfg.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/llmchat.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/llmmdls.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/llmprvd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/llmrte.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/llmstat.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/loadprov.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/loounit.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/ltrlrng.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mahaoutl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mcartst.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mhcont.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/missgrid.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/misspat.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/missruns.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/misssmry.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mkmnf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mksyncol.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mksyncsv.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mnfcanon.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mnfdiff.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mnfrcmp.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mnfrecseed.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/morani.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mortdisp.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mrk.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/mtchdid.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/onl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/optsqr.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/oqskg.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/orchk.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/ordcmp.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/perdays.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/perminf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/pgsig.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/piperate.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plmfld.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plndid.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plndml.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plnpois.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plnpwr.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plot-methods.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plot.rmbl_dstfit.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plotevgrid.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plothwk.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plotlrnz.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plotmore.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plotseries.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/plrcf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/polbrdarea.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/polbrdn.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/polex.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/pqcbknd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/pqckg.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/printmeth.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/profcols.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/profshr.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/prrgdecl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/prsbands.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/pubbnd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/qltyrcd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/raplok.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/ratechg.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rategap.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rcdmnf.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/recrd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/relbl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rgncov.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rgnmapalt.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rgnmapcmp.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rgnmapintg.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rgnmappts.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rlblfrns.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rmbl-aliases.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rmblapp.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rmbldemo.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rndbytes.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rptanl.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rptmd.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rslvarc.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rslvckan.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rslvckns.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rslvsoc.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rsv.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rtcalc.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rul.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rulelib.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/rvkfetch.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/scanadj.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/scests.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/schemapath.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/schval.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/sctidy.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/sevidx.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/sha256file.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/shrs.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/signpubkey.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/siudate.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/siufetch.Rd |only rmoriebricklayer-1.0.2/rmoriebricklayer/man/siufprs.Rd |only 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rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-progress_anim.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-published_bounds.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-ralloc.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-rate.R | 376 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-region_map.R | 221 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-report.R | 190 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-repro.R | 217 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-retest-b617a3f.R | 510 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-review-1_0_0-native.R | 846 - rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-review-1_0_0-siu.R | 87 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-review-1_0_0-wipe.R | 302 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-review-boundary.R | 257 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-review-coverage.R | 526 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-review-stats.R | 227 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-review2.R | 756 - rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-review3.R | 907 - rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-review4.R | 1124 + rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-review5.R | 500 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-revocation.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-rmbldemo.R | 140 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-round5.R | 824 - rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-round8.R | 674 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-rule_lib.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-rules.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-scan_adjust.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-schema-chain.R | 203 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-schema_infer.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-search.R | 388 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-search_figs.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-services.R | 427 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-sha256_native.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-shax.R | 85 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-sign-pqc.R | 224 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-sign.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-signin-profile.R | 352 rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-siu-detectors.R | 457 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rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-xmss_state.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-yoy.R | 864 - rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-yoy_labels.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-yoy_output.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-yoy_render.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/tests/testthat/test-yoy_write.R |only rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_air-pollution-and-health.Rmd | 67 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_attestations-bundles-chains.Rmd | 16 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_banded-tables-and-concentration.Rmd | 8 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_capsules.Rmd | 42 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_categorical-integrity.Rmd | 48 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_causal-effects.Rmd | 17 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rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_missingness-and-outliers.Rmd | 31 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_plotting-results.Rmd | 162 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_policy-evaluation.Rmd | 145 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_post-quantum-signatures.Rmd | 60 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_provenance.Rmd | 203 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_search-and-rescue.Rmd | 138 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_side-channel-assurance.Rmd | 24 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_siu-reports.Rmd | 55 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_small-area-rates.Rmd | 29 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_stock-and-flow.Rmd | 39 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_survey-estimation.Rmd | 76 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_tables.Rmd | 23 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_validation-rules-and-synthetic-data.Rmd | 29 rmoriebricklayer-1.0.3/rmoriebricklayer/vignettes/parts/_yoy.Rmd | 9 829 files changed, 148285 insertions(+), 58852 deletions(-)
More information about rmoriebricklayer at CRAN
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Title: Rasch Model Parameters by Pairwise Algorithm
Description: Performs the explicit calculation
-- not estimation! -- of the Rasch item parameters for dichotomous and
polytomous item responses, using a pairwise comparison approach. Person
parameters (WLE) are calculated according to Warm's weighted likelihood
approach.
Author: Joerg-Henrik Heine [aut, cre, ctb],
Christian Grebe [ctb]
Maintainer: Joerg-Henrik Heine <jhheine@googlemail.com>
Diff between pairwise versions 0.6.2-0 dated 2025-09-12 and 0.6.4-0 dated 2026-10-30
DESCRIPTION | 14 MD5 | 64 +- NAMESPACE | 67 +- NEWS | 19 R/esc.R | 698 ++++++++++++++++++++++++-- R/gif.R | 868 ++++++++++++++++++++++++++++++--- R/iff.R | 217 ++++++-- R/pair.R | 36 + R/pairSE.R | 250 +++++---- R/pairwise-package.R | 4 R/summary.pairSE.R | 4 R/summary.pers.R | 70 +- R/tff.R | 883 ++++++++++++++++++++++++++++++---- build/vignette.rds |binary data/DEU_PISA2012.RData |binary data/KCT.RData |binary data/Neoffi5.RData |binary data/bfiN.RData |binary data/bfiN_miss.RData |binary data/bfi_cov.RData |binary data/cog.RData |binary data/cogBOOKLET.RData |binary data/kft5.RData |binary data/sim200x3.RData |binary inst/doc/DEU_PISA2012_description.R | 2 inst/doc/DEU_PISA2012_description.pdf |binary man/esc.Rd | 100 +++ man/gif.Rd | 122 ++++ man/iff.Rd | 34 - man/pair.Rd | 11 man/pairSE.Rd | 105 +--- man/pairwise_PACKAGE.Rd | 2 man/tff.Rd | 132 ++++- 33 files changed, 3052 insertions(+), 650 deletions(-)
Title: Simplified 'HDF5' Interface
Description: A user-friendly interface for the Hierarchical Data Format 5
('HDF5') library designed to "just work." It bundles the necessary
system libraries to ensure easy installation on all platforms. Features
smart defaults that automatically map R objects (vectors, matrices,
data frames) to efficient 'HDF5' types, removing the need to manage
low-level details like dataspaces or property lists. Uses the 'HDF5'
library developed by The HDF Group <https://www.hdfgroup.org/>.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between h5lite versions 2.1.1.1 dated 2026-05-18 and 2.2.0.0 dated 2026-10-30
DESCRIPTION | 10 MD5 | 145 ++- NAMESPACE | 1 NEWS.md | 70 + R/assert.r | 28 R/compress.r | 108 ++ R/info.r | 51 - R/inspect.r | 72 + R/ls.r | 19 R/open.r | 65 + R/organize.r | 30 R/read.r | 73 + R/write.r | 446 ++++++++--- R/zzz.r | 29 README.md | 17 build/vignette.rds |binary inst/doc/atomic-vectors.R | 13 inst/doc/atomic-vectors.Rmd | 31 inst/doc/atomic-vectors.html | 539 +++----------- inst/doc/attributes-in-depth.html | 584 ++++----------- inst/doc/compression.R |only inst/doc/compression.Rmd | 436 ++++++++--- inst/doc/compression.html | 1165 ++++++++++++++++--------------- inst/doc/data-frames.R | 13 inst/doc/data-frames.Rmd | 25 inst/doc/data-frames.html | 507 ++++--------- inst/doc/data-types.R | 6 inst/doc/data-types.Rmd | 44 - inst/doc/data-types.html | 651 ++++------------- inst/doc/h5lite.R | 11 inst/doc/h5lite.Rmd | 34 inst/doc/h5lite.html | 554 ++++---------- inst/doc/matrices.R | 17 inst/doc/matrices.Rmd | 32 inst/doc/matrices.html | 498 +++---------- inst/doc/oo-interface.html | 485 +++--------- inst/doc/organization.html | 521 ++++--------- inst/doc/parallel-io.html | 240 ------ inst/doc/partial-reading.Rmd | 2 inst/doc/partial-reading.html | 621 ++++------------ man/h5_compression.Rd | 15 man/h5_delete.Rd | 7 man/h5_inspect.Rd | 9 man/h5_length.Rd | 2 man/h5_ls.Rd | 7 man/h5_move.Rd | 4 man/h5_names.Rd | 3 man/h5_threads.Rd |only man/h5_write.Rd | 15 man/h5lite-package.Rd | 5 src/data.frame.c | 92 +- src/dimscales.c | 43 - src/h5lite.h | 20 src/info.c | 2 src/init.c | 54 + src/inspect.c | 8 src/ls.c | 129 ++- src/organize.c | 286 ++++++- src/read.c | 74 + src/util.c | 100 ++ src/write.c | 43 - src/write_utils.c | 246 ++++-- tests/tinytests/files |only tests/tinytests/test-api-behavior.r |only tests/tinytests/test-compress-pipeline.r |only tests/tinytests/test-compress.r | 12 tests/tinytests/test-data-safety.r |only tests/tinytests/test-dataframe.r | 5 tests/tinytests/test-foreign.r |only tests/tinytests/test-inspect.r | 20 vignettes/atomic-vectors.Rmd | 31 vignettes/compression.Rmd | 436 ++++++++--- vignettes/data-frames.Rmd | 25 vignettes/data-types.Rmd | 44 - vignettes/h5lite.Rmd | 34 vignettes/matrices.Rmd | 32 vignettes/partial-reading.Rmd | 2 77 files changed, 4807 insertions(+), 5191 deletions(-)
Title: Confidence Intervals for Robust and Classical Linear Mixed Model
Estimators
Description: The main function calculates confidence intervals (CI) for Mixed Models, utilizing both classical estimators from the lmer() function in the 'lme4' package and robust estimators from the rlmer() function in the 'robustlmm' package, as well as the varComprob() function in the 'robustvarComp' package. Three methods are available: the classical Wald method, the wild bootstrap, and the parametric bootstrap. Bootstrap methods offer flexibility in obtaining lower and upper bounds through percentile or BCa methods. More details are given in Mason, F., Cantoni, E., & Ghisletta, P. (2021) <doi:10.5964/meth.6607> and Mason, F., Cantoni, E., & Ghisletta, P. (2024) <doi:10.1037/met0000643>.
Author: Fabio Mason [aut, cre],
Manuel Koller [aut],
Eva Cantoni [ctb, ths],
Paolo Ghisletta [ths]
Maintainer: Fabio Mason <fabio.mason@unige.ch>
Diff between confintROB versions 1.1-1 dated 2026-01-29 and 1.2 dated 2026-10-30
DESCRIPTION | 8 - MD5 | 27 +++--- NEWS.md |only R/BCa.R | 15 +-- R/CIfunction_param.R | 2 R/CIfunction_wild.R | 7 - R/confintrob.R | 4 R/helpers.R | 74 ++++++++++++++++- inst/simulations |only man/confintROB.Rd | 4 tests/testthat/_snaps/confintrob.md | 89 ++++++++++----------- tests/testthat/_snaps/varComprob.md | 28 +++--- tests/testthat/setup.R |only tests/testthat/test-confintrob.R | 150 +++++++++++++++++++++++++++++++----- tests/testthat/test-varComprob.R | 14 +-- 15 files changed, 299 insertions(+), 123 deletions(-)
Title: Event Study Analysis
Description: Financial event study analysis. Implements the classical event
study methodology of MacKinlay (1997) <https://www.jstor.org/stable/2729691>
with multiple return models: market model, market adjusted, comparison
period mean adjusted, Fama and French three-factor (1993)
<doi:10.1016/0304-405X(93)90023-5> and five-factor (2015)
<doi:10.1016/j.jfineco.2014.10.010>, Carhart (1997) four-factor
<doi:10.1111/j.1540-6261.1997.tb03808.x>, generalized autoregressive
conditional heteroskedasticity (GARCH; Bollerslev, 1986)
<doi:10.1016/0304-4076(86)90063-1>, rolling window, and dynamic conditional
correlation GARCH (DCC-GARCH; Engle, 2002) <doi:10.1198/073500102288618487>.
Provides parametric and non-parametric test statistics, including the
standardized cross-sectional test of Boehmer, Musumeci and Poulsen (1991)
<doi:10.1016/0304-405X(91)90032-F> and its cross-correlation adjustment by
Kolari and Pynnonen (2010) <doi:10.1093/rfs/hhq072>; buy-and-ho [...truncated...]
Author: Simon Mueller [cre, aut]
Maintainer: Simon Mueller <sm@data-zoo.de>
Diff between EventStudy versions 0.66.0 dated 2026-10-21 and 0.70 dated 2026-10-30
EventStudy-0.66.0/EventStudy/tests/testthat/_problems |only EventStudy-0.70/EventStudy/DESCRIPTION | 6 EventStudy-0.70/EventStudy/MD5 | 46 +- EventStudy-0.70/EventStudy/NEWS.md | 9 EventStudy-0.70/EventStudy/R/report.R | 8 EventStudy-0.70/EventStudy/inst/doc/ai-advisor.html | 4 EventStudy-0.70/EventStudy/inst/doc/automated-reports.html | 4 EventStudy-0.70/EventStudy/inst/doc/cross-sectional-analysis.html | 4 EventStudy-0.70/EventStudy/inst/doc/custom-models.html | 4 EventStudy-0.70/EventStudy/inst/doc/custom-test-statistics.html | 4 EventStudy-0.70/EventStudy/inst/doc/data-download.html | 4 EventStudy-0.70/EventStudy/inst/doc/diagnostics-validation.html | 4 EventStudy-0.70/EventStudy/inst/doc/factor-models-bhar.html | 4 EventStudy-0.70/EventStudy/inst/doc/inference-robustness.html | 4 EventStudy-0.70/EventStudy/inst/doc/intraday-event-study.html | 4 EventStudy-0.70/EventStudy/inst/doc/introduction.html | 214 +++++----- EventStudy-0.70/EventStudy/inst/doc/modern-did-estimators.html | 4 EventStudy-0.70/EventStudy/inst/doc/panel-event-study.html | 4 EventStudy-0.70/EventStudy/inst/doc/result-extraction.html | 4 EventStudy-0.70/EventStudy/inst/doc/simulation-power-analysis.html | 4 EventStudy-0.70/EventStudy/inst/doc/synthetic-control.html | 4 EventStudy-0.70/EventStudy/inst/doc/time-varying-models.html | 4 EventStudy-0.70/EventStudy/inst/doc/volume-volatility-event-study.html | 4 EventStudy-0.70/EventStudy/tests/testthat/test_report_readonly_template.R |only 24 files changed, 183 insertions(+), 168 deletions(-)
Title: Analysis and Visualization of Circular Data
Description: Circumplex models, which organize constructs in a circle around two
underlying dimensions, are popular for studying interpersonal functioning,
mood/affect, and vocational preferences/environments. This package provides
tools for analyzing and visualizing circular data, including scoring
functions for relevant instruments and a generalization of the bootstrapped
structural summary method from Zimmermann & Wright (2017)
<doi:10.1177/1073191115621795> and functions for creating publication-ready
tables and figures from the results.
Author: Jeffrey Girard [aut, cre] ,
Johannes Zimmermann [aut] ,
Aidan Wright [aut]
Maintainer: Jeffrey Girard <me@jmgirard.com>
Diff between circumplex versions 2.0.1 dated 2026-09-06 and 2.1.0 dated 2026-10-30
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Title: R Interface to the 'Uno' Nonlinear Optimization Solver
Description: Bindings to 'Uno' (Unifying Nonlinear Optimization), a C++ solver
for smooth nonlinearly constrained optimization. 'Uno' unifies Lagrange-Newton
methods, including sequential quadratic programming and interior-point
methods, by decomposing them into interacting building blocks
(constraint-relaxation, inequality-handling, Hessian, and globalization
strategies) that can be freely combined, either through options or through
presets that reproduce established solvers such as 'filterSQP' and 'IPOPT'.
The framework is described in Vanaret and Leyffer (2026)
<doi:10.1007/s12532-026-00310-9>.
Author: Balasubramanian Narasimhan [aut, cre, cph] ,
Charlie Vanaret [aut, cph] ;
designed and implemented Uno),
Alexis Montoison [ctb, cph] and
Fortran interface, MA86 interface),
Joris Gillis [ctb, cph] ),
David Kiessling [ctb, cph] ),
Manuel Schaich [ctb [...truncated...]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between Uno versions 2.7.4-1 dated 2026-08-30 and 2.9.2-1 dated 2026-10-30
Uno-2.7.4-1/Uno/inst/HiGHS/cmake/python-highs.cmake |only Uno-2.7.4-1/Uno/inst/HiGHS/cmake/sources-python.cmake |only Uno-2.7.4-1/Uno/inst/HiGHS/extern/CLI11.hpp |only Uno-2.7.4-1/Uno/inst/HiGHS/extern/LICENCE_1_0.txt |only Uno-2.7.4-1/Uno/inst/HiGHS/extern/catch.hpp |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/highs_bindings.cpp |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/highspy |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/ipm/hipo/auxiliary/Log.cpp |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/ipm/hipo/auxiliary/Log.h |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/ipm/hipo/auxiliary/OrderingPrint.h |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/ipm/hipo/auxiliary/mycblas.h |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/ipm/hipo/ipm/LogHighs.cpp |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/ipm/hipo/ipm/LogHighs.h |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/mip/HighsMipAnalysis.cpp |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/mip/HighsMipAnalysis.h |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/qpsolver/crashsolution.hpp |only Uno-2.7.4-1/Uno/inst/HiGHS/highs/qpsolver/devexharrispricing.hpp |only Uno-2.7.4-1/Uno/inst/HiGHS/tests |only Uno-2.7.4-1/Uno/inst/uno/INSTALL.md |only Uno-2.7.4-1/Uno/inst/uno/UNIFICATION.md |only Uno-2.7.4-1/Uno/inst/uno/cmake |only Uno-2.7.4-1/Uno/inst/uno/dependencies |only Uno-2.7.4-1/Uno/inst/uno/docs |only Uno-2.7.4-1/Uno/inst/uno/interfaces/AMPL |only Uno-2.7.4-1/Uno/inst/uno/interfaces/C/README.md |only Uno-2.7.4-1/Uno/inst/uno/interfaces/C/example |only Uno-2.7.4-1/Uno/inst/uno/interfaces/Fortran/README.md |only Uno-2.7.4-1/Uno/inst/uno/interfaces/Fortran/example_uno.f90 |only Uno-2.7.4-1/Uno/inst/uno/mkdocs.yml |only Uno-2.7.4-1/Uno/inst/uno/pyproject.toml |only Uno-2.7.4-1/Uno/inst/uno/uno/ingredients/glob/switching/filter_methods/filters |only Uno-2.7.4-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/BQPD/BQPDWorkspace.cpp |only Uno-2.7.4-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/BQPD/BQPDWorkspace.hpp |only Uno-2.7.4-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/HiGHS/HiGHSWorkspace.cpp |only Uno-2.7.4-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/HiGHS/HiGHSWorkspace.hpp |only Uno-2.7.4-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/SubproblemSolver.cpp |only Uno-2.7.4-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/WoodburyEQPSolver.cpp |only Uno-2.7.4-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/WoodburyEQPSolver.hpp |only Uno-2.7.4-1/Uno/inst/uno/uno/linear_algebra/COOSparsity.hpp |only Uno-2.7.4-1/Uno/inst/uno/uno/linear_algebra/MatrixOrder.hpp |only Uno-2.7.4-1/Uno/inst/uno/uno/linear_algebra/VectorView.hpp |only Uno-2.7.4-1/Uno/inst/uno/uno/model/FixedBoundsConstraintsModel.cpp |only Uno-2.7.4-1/Uno/inst/uno/uno/model/FixedBoundsConstraintsModel.hpp |only Uno-2.7.4-1/Uno/inst/uno/uno/model/HomogeneousEqualityConstrainedModel.cpp |only Uno-2.7.4-1/Uno/inst/uno/uno/model/HomogeneousEqualityConstrainedModel.hpp |only Uno-2.7.4-1/Uno/inst/uno/uno/optimization/DualResiduals.hpp |only Uno-2.7.4-1/Uno/inst/uno/uno/optimization/Parameterization.cpp |only Uno-2.7.4-1/Uno/inst/uno/uno/optimization/Parameterization.hpp |only Uno-2.7.4-1/Uno/inst/uno/uno/symbolic/VectorExpression.hpp |only Uno-2.7.4-1/Uno/inst/uno/uno_default.opt |only Uno-2.7.4-1/Uno/inst/uno/unotest |only Uno-2.9.2-1/Uno/DESCRIPTION | 49 Uno-2.9.2-1/Uno/LICENSE | 2 Uno-2.9.2-1/Uno/MD5 | 975 +++---- Uno-2.9.2-1/Uno/NAMESPACE | 10 Uno-2.9.2-1/Uno/NEWS.md | 73 Uno-2.9.2-1/Uno/R/Uno-package.R | 13 Uno-2.9.2-1/Uno/R/cpp11.R | 16 Uno-2.9.2-1/Uno/R/uno_options.R |only Uno-2.9.2-1/Uno/R/uno_solve.R | 37 Uno-2.9.2-1/Uno/R/zzz.R |only Uno-2.9.2-1/Uno/README.md | 31 Uno-2.9.2-1/Uno/cleanup | 2 Uno-2.9.2-1/Uno/configure | 39 Uno-2.9.2-1/Uno/configure.win | 41 Uno-2.9.2-1/Uno/inst/CITATION | 28 Uno-2.9.2-1/Uno/inst/COPYRIGHTS | 84 Uno-2.9.2-1/Uno/inst/HiGHS/BUILD.bazel | 20 Uno-2.9.2-1/Uno/inst/HiGHS/CMakeLists.txt | 92 Uno-2.9.2-1/Uno/inst/HiGHS/CONTRIBUTING.md | 2 Uno-2.9.2-1/Uno/inst/HiGHS/FEATURES.md | 207 + Uno-2.9.2-1/Uno/inst/HiGHS/MODULE.bazel | 2 Uno-2.9.2-1/Uno/inst/HiGHS/README.md | 16 Uno-2.9.2-1/Uno/inst/HiGHS/Version.txt | 4 Uno-2.9.2-1/Uno/inst/HiGHS/app/CMakeLists.txt | 22 Uno-2.9.2-1/Uno/inst/HiGHS/app/HighsAppExternalDeps.h |only Uno-2.9.2-1/Uno/inst/HiGHS/app/HighsRuntimeOptions.h | 57 Uno-2.9.2-1/Uno/inst/HiGHS/cmake/FindHipoDeps.cmake | 624 ++-- Uno-2.9.2-1/Uno/inst/HiGHS/cmake/README.md | 1 Uno-2.9.2-1/Uno/inst/HiGHS/cmake/cpp-highs.cmake | 21 Uno-2.9.2-1/Uno/inst/HiGHS/cmake/dotnet.cmake | 2 Uno-2.9.2-1/Uno/inst/HiGHS/cmake/set-version.cmake | 4 Uno-2.9.2-1/Uno/inst/HiGHS/cmake/sources.cmake | 187 - 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Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/inertia/PrimalDualInertiaCorrection.hpp | 19 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/inertia/PrimalInertiaCorrection.cpp | 33 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/inertia/PrimalInertiaCorrection.hpp | 12 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem/NewtonSystem.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem/NewtonSystemSymbols.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem/Subproblem.cpp | 232 - Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem/Subproblem.hpp | 75 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/BQPD/BQPDQuadraticProgram.cpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/BQPD/BQPDQuadraticProgram.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/BQPD/BQPDSolver.cpp | 321 +- Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/BQPD/BQPDSolver.hpp | 55 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/BoxLPSolver.cpp | 72 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/BoxLPSolver.hpp | 21 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/COOLinearSystem.cpp | 31 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/COOLinearSystem.hpp | 4 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/DirectSymmetricIndefiniteLinearSolver.hpp | 2 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/EQPSolver.cpp | 182 + Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/EQPSolver.hpp | 40 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/HSL |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/HiGHS/HiGHSQuadraticProgram.cpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/HiGHS/HiGHSQuadraticProgram.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/HiGHS/HiGHSSolver.cpp | 120 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/HiGHS/HiGHSSolver.hpp | 28 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/IQPSolver.cpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/IQPSolver.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/InverseNewtonSolver.cpp | 42 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/InverseNewtonSolver.hpp | 20 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/LPSolver.cpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/LPSolver.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/LPSolverFactory.cpp | 4 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/LPSolverFactory.hpp | 4 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/LinearSystem.hpp | 5 Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/LowRankCorrection.cpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/LowRankCorrection.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/ingredients/subproblem_solvers/MA27/MA27Solver.cpp | 226 - 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Uno-2.9.2-1/Uno/inst/uno/uno/linear_algebra/Vector.hpp | 30 Uno-2.9.2-1/Uno/inst/uno/uno/linear_algebra/View.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/model/BoundRelaxedModel.cpp | 59 Uno-2.9.2-1/Uno/inst/uno/uno/model/BoundRelaxedModel.hpp | 56 Uno-2.9.2-1/Uno/inst/uno/uno/model/Model.cpp | 108 Uno-2.9.2-1/Uno/inst/uno/uno/model/Model.hpp | 49 Uno-2.9.2-1/Uno/inst/uno/uno/model/ScaledModel.cpp |only Uno-2.9.2-1/Uno/inst/uno/uno/model/ScaledModel.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Direction.cpp | 19 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Direction.hpp | 6 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/EvaluationCache.cpp | 12 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/EvaluationCache.hpp | 2 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Evaluations.cpp | 46 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Evaluations.hpp | 12 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Iterate.cpp | 44 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Iterate.hpp | 14 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Multipliers.cpp | 22 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Multipliers.hpp | 2 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/OptimizationProblem.cpp | 272 +- Uno-2.9.2-1/Uno/inst/uno/uno/optimization/OptimizationProblem.hpp | 87 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/OptimizationStatus.cpp | 3 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/OptimizationStatus.hpp | 3 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Residuals.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Result.cpp | 23 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Result.hpp | 9 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Scaling.cpp |only Uno-2.9.2-1/Uno/inst/uno/uno/optimization/Scaling.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/optimization/SolutionStatus.cpp | 5 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/SolutionStatus.hpp | 3 Uno-2.9.2-1/Uno/inst/uno/uno/optimization/WarmstartInformation.cpp | 4 Uno-2.9.2-1/Uno/inst/uno/uno/options/DefaultOptions.cpp | 94 Uno-2.9.2-1/Uno/inst/uno/uno/options/Options.cpp | 404 +-- Uno-2.9.2-1/Uno/inst/uno/uno/options/Options.hpp | 92 Uno-2.9.2-1/Uno/inst/uno/uno/options/Presets.cpp | 109 Uno-2.9.2-1/Uno/inst/uno/uno/options/Presets.hpp | 19 Uno-2.9.2-1/Uno/inst/uno/uno/symbolic/Inverse.hpp | 2 Uno-2.9.2-1/Uno/inst/uno/uno/symbolic/Multiplication.hpp | 2 Uno-2.9.2-1/Uno/inst/uno/uno/symbolic/Range.hpp | 24 Uno-2.9.2-1/Uno/inst/uno/uno/symbolic/ScalarMultiple.hpp | 2 Uno-2.9.2-1/Uno/inst/uno/uno/symbolic/Subtraction.hpp | 5 Uno-2.9.2-1/Uno/inst/uno/uno/symbolic/Sum.hpp | 5 Uno-2.9.2-1/Uno/inst/uno/uno/symbolic/Transpose.hpp | 2 Uno-2.9.2-1/Uno/inst/uno/uno/symbolic/Triangular.hpp | 2 Uno-2.9.2-1/Uno/inst/uno/uno/symbolic/UnaryNegation.hpp | 4 Uno-2.9.2-1/Uno/inst/uno/uno/symbolic/symbolic_traits.hpp | 67 Uno-2.9.2-1/Uno/inst/uno/uno/tools/DynamicLoader.cpp |only Uno-2.9.2-1/Uno/inst/uno/uno/tools/DynamicLoader.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/tools/Infinity.hpp | 13 Uno-2.9.2-1/Uno/inst/uno/uno/tools/InterruptHandler.cpp |only Uno-2.9.2-1/Uno/inst/uno/uno/tools/InterruptHandler.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/tools/Logger.cpp | 4 Uno-2.9.2-1/Uno/inst/uno/uno/tools/Logger.hpp | 13 Uno-2.9.2-1/Uno/inst/uno/uno/tools/Statistics.cpp | 258 +- Uno-2.9.2-1/Uno/inst/uno/uno/tools/Statistics.hpp | 71 Uno-2.9.2-1/Uno/inst/uno/uno/tools/Symbols.hpp |only Uno-2.9.2-1/Uno/inst/uno/uno/tools/Timer.cpp | 44 Uno-2.9.2-1/Uno/inst/uno/uno/tools/Timer.hpp | 19 Uno-2.9.2-1/Uno/man/Uno-package.Rd | 17 Uno-2.9.2-1/Uno/man/uno_mumps_version.Rd |only Uno-2.9.2-1/Uno/man/uno_options.Rd |only Uno-2.9.2-1/Uno/man/uno_solve.Rd | 34 Uno-2.9.2-1/Uno/man/uno_status_labels.Rd |only Uno-2.9.2-1/Uno/man/uno_version.Rd | 2 Uno-2.9.2-1/Uno/src/Makevars.in | 6 Uno-2.9.2-1/Uno/src/cpp11.cpp | 34 Uno-2.9.2-1/Uno/src/dmumps_shim.c | 155 - Uno-2.9.2-1/Uno/src/dmumps_shim.h |only Uno-2.9.2-1/Uno/src/uno_binding.cpp | 183 + Uno-2.9.2-1/Uno/tools |only Uno-2.9.2-1/Uno/vignettes/Uno.Rmd | 16 514 files changed, 16232 insertions(+), 9288 deletions(-)
Title: Tools for Romania's National Institute of Statistics Tempo Data
Description: Find, inspect and download statistical tables from the Romanian
National Institute of Statistics' TEMPO Online database. Tables can be
listed and searched in Romanian or English, their structure inspected
before downloading, and whole tables or filtered selections retrieved
either as data frames or as CSV files that are kept up to date between
sessions.
Author: Marian Necula [aut, cre],
Bogdan Oancea [aut],
Ana Maria Tiru [aut]
Maintainer: Marian Necula <marian.necula00@gmail.com>
Diff between TEMPO versions 0.1.0 dated 2026-10-02 and 0.2.0 dated 2026-10-30
TEMPO-0.1.0/TEMPO/tests/testthat/logTEMPO.txt |only TEMPO-0.1.0/TEMPO/tests/testthat/test-input-validation.R |only TEMPO-0.1.0/TEMPO/tests/testthat/test-tempo-api.R |only TEMPO-0.2.0/TEMPO/DESCRIPTION | 24 TEMPO-0.2.0/TEMPO/MD5 | 66 - TEMPO-0.2.0/TEMPO/NAMESPACE | 8 TEMPO-0.2.0/TEMPO/NEWS.md |only TEMPO-0.2.0/TEMPO/R/TEMPO-package.R | 32 TEMPO-0.2.0/TEMPO/R/tempo_api.R | 753 +++++++++++---- TEMPO-0.2.0/TEMPO/R/tempo_bulk.R | 133 ++ TEMPO-0.2.0/TEMPO/R/tempo_cache.R |only TEMPO-0.2.0/TEMPO/R/tempo_conditions.R |only TEMPO-0.2.0/TEMPO/R/tempo_conditions_doc.R |only TEMPO-0.2.0/TEMPO/R/tempo_get.R |only TEMPO-0.2.0/TEMPO/R/tempo_hierarchy.R |only TEMPO-0.2.0/TEMPO/R/tempo_http.R |only TEMPO-0.2.0/TEMPO/R/tempo_meta.R |only TEMPO-0.2.0/TEMPO/R/tempo_options.R |only TEMPO-0.2.0/TEMPO/R/tempo_search.R |only TEMPO-0.2.0/TEMPO/R/tempo_tidy.R |only TEMPO-0.2.0/TEMPO/R/tempo_toc.R | 126 +- TEMPO-0.2.0/TEMPO/README.md | 112 ++ TEMPO-0.2.0/TEMPO/build/vignette.rds |binary TEMPO-0.2.0/TEMPO/inst/CITATION |only TEMPO-0.2.0/TEMPO/inst/doc/using-tempo.R | 260 ++++- TEMPO-0.2.0/TEMPO/inst/doc/using-tempo.Rmd | 445 +++++++- TEMPO-0.2.0/TEMPO/inst/doc/using-tempo.html | 472 +++++++-- TEMPO-0.2.0/TEMPO/man/TEMPO-conditions.Rd |only TEMPO-0.2.0/TEMPO/man/TEMPO-options.Rd |only TEMPO-0.2.0/TEMPO/man/TEMPO-package.Rd | 43 TEMPO-0.2.0/TEMPO/man/tempo_bulk.Rd | 84 + TEMPO-0.2.0/TEMPO/man/tempo_cache_clear.Rd |only TEMPO-0.2.0/TEMPO/man/tempo_cache_dir.Rd |only TEMPO-0.2.0/TEMPO/man/tempo_get.Rd |only TEMPO-0.2.0/TEMPO/man/tempo_hierarchy.Rd |only TEMPO-0.2.0/TEMPO/man/tempo_meta.Rd |only TEMPO-0.2.0/TEMPO/man/tempo_search.Rd |only TEMPO-0.2.0/TEMPO/man/tempo_tidy.Rd |only TEMPO-0.2.0/TEMPO/man/tempo_toc.Rd | 63 + TEMPO-0.2.0/TEMPO/tests/testthat/helper-tempo-service.R |only TEMPO-0.2.0/TEMPO/tests/testthat/test-cache.R |only TEMPO-0.2.0/TEMPO/tests/testthat/test-conditions.R |only TEMPO-0.2.0/TEMPO/tests/testthat/test-csv.R |only TEMPO-0.2.0/TEMPO/tests/testthat/test-filters.R |only TEMPO-0.2.0/TEMPO/tests/testthat/test-html.R |only TEMPO-0.2.0/TEMPO/tests/testthat/test-live.R |only TEMPO-0.2.0/TEMPO/tests/testthat/test-metadata.R |only TEMPO-0.2.0/TEMPO/tests/testthat/test-plan-query.R |only TEMPO-0.2.0/TEMPO/tests/testthat/test-service.R |only TEMPO-0.2.0/TEMPO/tests/testthat/test-tidy.R |only TEMPO-0.2.0/TEMPO/tests/testthat/test-validation.R |only TEMPO-0.2.0/TEMPO/vignettes/using-tempo.Rmd | 445 +++++++- 52 files changed, 2483 insertions(+), 583 deletions(-)
Title: A Simulation Framework for Spatiotemporal Population Genetics
Description: A framework for simulating spatially explicit genomic data which
leverages real cartographic information for programmatic and visual encoding
of spatiotemporal population dynamics on real geographic landscapes. Population
genetic models are then automatically executed by the 'SLiM' software by Haller
et al. (2019) <doi:10.1093/molbev/msy228> behind the scenes, using a custom
built-in simulation 'SLiM' script. Additionally, fully abstract spatial models
not tied to a specific geographic location are supported, and users can also
simulate data from standard, non-spatial, random-mating models. These can be
simulated either with the 'SLiM' built-in back-end script, or using an efficient
coalescent population genetics simulator 'msprime' by Baumdicker et al. (2022)
<doi:10.1093/genetics/iyab229> with a custom-built 'Python' script bundled with the
R package. Simulated genomic data is saved in a tree-sequence format and can be
loaded, manipulated, and summarised using tree-sequen [...truncated...]
Author: Martin Petr [aut, cre]
Maintainer: Martin Petr <contact@bodkan.net>
Diff between slendr versions 1.5.0 dated 2026-06-26 and 1.6.0 dated 2026-10-30
DESCRIPTION | 8 MD5 | 223 +- NAMESPACE | 53 NEWS.md | 128 + R/compilation.R | 3 R/interface.R | 105 - R/msprime.R | 45 R/python.R | 13 R/slim.R | 48 R/tree-sequences.R | 189 +- R/tspop.R | 4 R/utils.R | 22 R/visualization.R | 43 README.md | 14 build/partial.rdb |binary build/vignette.rds |binary inst/doc/vignette-01-tutorial.html | 235 +-- inst/doc/vignette-02-grid-model.html | 371 ++-- inst/doc/vignette-03-interactions.html | 80 - inst/doc/vignette-04-nonspatial-models.R | 14 inst/doc/vignette-04-nonspatial-models.Rmd | 16 inst/doc/vignette-04-nonspatial-models.html | 128 - inst/doc/vignette-05-tree-sequences.R | 12 inst/doc/vignette-05-tree-sequences.Rmd | 26 inst/doc/vignette-05-tree-sequences.html | 391 ++--- inst/doc/vignette-06-locations.R | 6 inst/doc/vignette-06-locations.Rmd | 6 inst/doc/vignette-06-locations.html | 131 - inst/doc/vignette-07-engines.R | 34 inst/doc/vignette-07-engines.Rmd | 34 inst/doc/vignette-07-engines.html | 394 ++--- inst/doc/vignette-08-nonslendr-tskit.html | 12 inst/doc/vignette-10-tracts.R | 4 inst/doc/vignette-10-tracts.Rmd | 4 inst/doc/vignette-10-tracts.html | 34 inst/doc/vignette-11-extensions.R | 116 - inst/doc/vignette-11-extensions.Rmd | 28 inst/doc/vignette-11-extensions.html | 774 +++++----- inst/extdata/models/introgression/__pycache__/script.cpython-312.pyc |binary inst/extdata/models/introgression/checksums.tsv | 2 inst/extdata/models/introgression/ranges.rds |binary inst/extdata/models/introgression/script.py | 4 inst/extdata/models/introgression/script.slim | 2 inst/extdata/models/introgression_msprime.trees |binary inst/extdata/models/introgression_slim.trees |binary inst/extdata/models/msprime.trees |binary man/compile_model.Rd | 4 man/examples/model_definition.R | 4 man/expand_range.Rd | 4 man/gene_flow.Rd | 4 man/init_env.Rd | 5 man/move.Rd | 4 man/msprime.Rd | 25 man/plot_model.Rd | 4 man/population.Rd | 4 man/resize.Rd | 17 man/schedule_recording.Rd |only man/schedule_sampling.Rd | 29 man/set_dispersal.Rd | 4 man/set_range.Rd | 4 man/shrink_range.Rd | 4 man/slim.Rd | 25 man/ts_afs.Rd | 2 man/ts_divergence.Rd | 2 man/ts_diversity.Rd | 2 man/ts_names.Rd | 23 man/ts_recorded.Rd |only man/ts_replicate.Rd |only man/ts_samples.Rd | 29 man/ts_segregating.Rd | 2 man/ts_simplify.Rd | 2 man/ts_tracts.Rd | 2 tests/testthat/helper-functions.R | 8 tests/testthat/test-abstract-vs-real-landscapes.R | 2 tests/testthat/test-compilation.R | 12 tests/testthat/test-deprecation.R | 31 tests/testthat/test-dynamics.R | 8 tests/testthat/test-engines.R | 3 tests/testthat/test-extensions.R | 19 tests/testthat/test-future.R | 113 - tests/testthat/test-geneflow.R | 6 tests/testthat/test-geometrical-operations.R | 2 tests/testthat/test-ibd-squashing.R | 2 tests/testthat/test-ibd.R | 12 tests/testthat/test-interaction-changes.R | 4 tests/testthat/test-manual-ts.R | 1 tests/testthat/test-msprime-geneflow.R | 20 tests/testthat/test-msprime-metadata.R | 31 tests/testthat/test-msprime.R | 40 tests/testthat/test-named-sampling.R | 149 - tests/testthat/test-nonserialized.R | 27 tests/testthat/test-population.R | 16 tests/testthat/test-pure-msprime-vs-slendr.R | 3 tests/testthat/test-pure-slim-vs-slendr.R | 3 tests/testthat/test-resizes-locked.R | 1 tests/testthat/test-resizes.R | 44 tests/testthat/test-runners.R | 3 tests/testthat/test-sampling.R | 202 +- tests/testthat/test-simulation-runs.R | 41 tests/testthat/test-time-direction.R | 11 tests/testthat/test-trees.R | 9 tests/testthat/test-ts-ancestors-descendants.R | 3 tests/testthat/test-ts-extend.R | 8 tests/testthat/test-ts-pure-nonspatial.R | 3 tests/testthat/test-ts-pure-spatial.R | 3 tests/testthat/test-ts.R | 107 - tests/testthat/test-tspop.R | 7 tests/testthat/test-vcf.R | 14 vignettes/vignette-04-nonspatial-models.Rmd | 16 vignettes/vignette-05-tree-sequences.Rmd | 26 vignettes/vignette-06-locations.Rmd | 6 vignettes/vignette-07-engines.Rmd | 34 vignettes/vignette-10-tracts.Rmd | 4 vignettes/vignette-11-extensions.Rmd | 28 114 files changed, 2735 insertions(+), 2308 deletions(-)
Title: An Efficient and Precise Quantile Mapping for Normal
Pseudo-Random Number Generation
Description: High-performance pseudo-normal random generator using an
optimized quantile mapping algorithm. It provides fast generation of
normal pseudo-random numbers based on precise mathematical
approximations. The package features Rnorm() for efficient
single-threaded generation and parallel_Rnorm(), a high-performance,
multithreaded variant powered by 'RcppParallel' and Intel 'TBB'.
Package compilation flags are optimized to support multi-core parallel
processing. Renamed parallel_Rnorm() to PRnorm() for brevity.
Author: Piotr Sulewski [aut, cre]
Maintainer: Piotr Sulewski <piotr.sulewski@upsl.edu.pl>
Diff between NormGen versions 0.0.6 dated 2026-10-22 and 0.0.7 dated 2026-10-30
NormGen-0.0.6/NormGen/man/parallel_Rnorm.Rd |only NormGen-0.0.6/NormGen/tests/testthat/test-parallel_Rnorm.R |only NormGen-0.0.7/NormGen/DESCRIPTION | 8 ++--- NormGen-0.0.7/NormGen/MD5 | 18 ++++++------- NormGen-0.0.7/NormGen/NAMESPACE | 2 - NormGen-0.0.7/NormGen/NEWS.md | 3 +- NormGen-0.0.7/NormGen/R/RcppExports.R | 4 +- NormGen-0.0.7/NormGen/README.md | 17 +++++++----- NormGen-0.0.7/NormGen/man/PRnorm.Rd |only NormGen-0.0.7/NormGen/src/RcppExports.cpp | 10 +++---- NormGen-0.0.7/NormGen/src/Rnorm.cpp | 2 - NormGen-0.0.7/NormGen/tests/testthat/test-PRnorm.R |only 12 files changed, 34 insertions(+), 30 deletions(-)
Title: Analyze Data from Stepped Wedge Cluster Randomized Trials
Description: Provide various functions and tools to help fit models for
estimating treatment effects in stepped wedge cluster randomized trials.
Implements methods described in Kenny, Voldal, Xia, and Heagerty (2022)
"Analysis of stepped wedge cluster randomized trials in the presence of a
time-varying treatment effect", <doi:10.1002/sim.9511>.
Author: Avi Kenny [aut, cre, cph],
David Arthur [aut],
Yongdong Ouyang [aut]
Maintainer: Avi Kenny <avi.kenny@gmail.com>
Diff between steppedwedge versions 1.0.0 dated 2025-02-21 and 1.1.0 dated 2026-10-30
steppedwedge-1.0.0/steppedwedge/man/print.sw_analysis.Rd |only steppedwedge-1.1.0/steppedwedge/DESCRIPTION | 18 steppedwedge-1.1.0/steppedwedge/MD5 | 67 steppedwedge-1.1.0/steppedwedge/NAMESPACE | 4 steppedwedge-1.1.0/steppedwedge/NEWS.md | 32 steppedwedge-1.1.0/steppedwedge/R/analyze.R | 1692 ++++++---- steppedwedge-1.1.0/steppedwedge/R/data.R | 21 steppedwedge-1.1.0/steppedwedge/R/load_data.R | 717 ++-- steppedwedge-1.1.0/steppedwedge/R/misc.R |only steppedwedge-1.1.0/steppedwedge/R/params.R |only steppedwedge-1.1.0/steppedwedge/R/plot_clusters.R |only steppedwedge-1.1.0/steppedwedge/R/plot_effect_curves.R |only steppedwedge-1.1.0/steppedwedge/R/print_sw_analysis.R | 58 steppedwedge-1.1.0/steppedwedge/R/steppedwedge-package.R | 16 steppedwedge-1.1.0/steppedwedge/README.md | 2 steppedwedge-1.1.0/steppedwedge/build/partial.rdb |binary steppedwedge-1.1.0/steppedwedge/build/vignette.rds |binary steppedwedge-1.1.0/steppedwedge/data/sw_data_example.rda |binary steppedwedge-1.1.0/steppedwedge/data/sw_data_example_binom.rda |only steppedwedge-1.1.0/steppedwedge/inst/doc/steppedwedge.R | 78 steppedwedge-1.1.0/steppedwedge/inst/doc/steppedwedge.Rmd | 119 steppedwedge-1.1.0/steppedwedge/inst/doc/steppedwedge.html | 242 + steppedwedge-1.1.0/steppedwedge/man/analyze.Rd | 75 steppedwedge-1.1.0/steppedwedge/man/as_table.Rd |only steppedwedge-1.1.0/steppedwedge/man/load_data.Rd | 36 steppedwedge-1.1.0/steppedwedge/man/params.Rd |only steppedwedge-1.1.0/steppedwedge/man/plot_clusters.Rd |only steppedwedge-1.1.0/steppedwedge/man/plot_effect_curves.Rd |only steppedwedge-1.1.0/steppedwedge/man/sw_data_example.Rd | 50 steppedwedge-1.1.0/steppedwedge/man/sw_data_example_binom.Rd |only steppedwedge-1.1.0/steppedwedge/tests/testthat/_snaps |only steppedwedge-1.1.0/steppedwedge/tests/testthat/test-advanced_features.R |only steppedwedge-1.1.0/steppedwedge/tests/testthat/test-analyze_data.R | 756 ++++ steppedwedge-1.1.0/steppedwedge/tests/testthat/test-load_data.R | 182 + steppedwedge-1.1.0/steppedwedge/tests/testthat/test-misc.R |only steppedwedge-1.1.0/steppedwedge/tests/testthat/test-params.R |only steppedwedge-1.1.0/steppedwedge/tests/testthat/test-plot_clusters.R |only steppedwedge-1.1.0/steppedwedge/tests/testthat/test-plot_design.R | 6 steppedwedge-1.1.0/steppedwedge/tests/testthat/test-plot_effect_curves.R |only steppedwedge-1.1.0/steppedwedge/tests/testthat/test-print_sw_analysis.R |only steppedwedge-1.1.0/steppedwedge/tests/testthat/test-random_effects.R |only steppedwedge-1.1.0/steppedwedge/vignettes/steppedwedge.Rmd | 119 42 files changed, 3301 insertions(+), 989 deletions(-)
Title: Tidy Presentation of Clinical Reporting
Description: Streamlined statistical reporting in 'Rmarkdown' environments.
Facilitates the automated reporting of descriptive statistics, multiple
univariate models, multivariable models and tables combining these outputs.
Plotting functions include customisable survival curves, forest plots from
logistic and ordinal regression and bivariate comparison plots.
Author: Lisa Avery [cre, aut] ,
Ryan Del Bel [aut],
Osvaldo Espin-Garcia [aut],
Katherine Lajkosz [aut] ,
Clarina Ong [aut],
Tyler Pittman [aut] ,
Anna Santiago [aut] ,
Yanning Wang [ctr],
Jessica Weiss [aut],
Wei Xu [aut]
Maintainer: Lisa Avery <lisa.avery@uhn.ca>
Diff between reportRmd versions 0.1.3 dated 2026-03-20 and 0.1.4 dated 2026-10-30
reportRmd-0.1.3/reportRmd/man/ggkmcif2Parameters_2025.Rd |only reportRmd-0.1.3/reportRmd/man/ggkmcif2_2025.Rd |only reportRmd-0.1.4/reportRmd/DESCRIPTION | 15 reportRmd-0.1.4/reportRmd/LICENSE | 4 reportRmd-0.1.4/reportRmd/MD5 | 146 reportRmd-0.1.4/reportRmd/NAMESPACE | 13 reportRmd-0.1.4/reportRmd/NEWS.md | 33 reportRmd-0.1.4/reportRmd/R/autoreg.R | 257 reportRmd-0.1.4/reportRmd/R/autosum.R | 1075 + reportRmd-0.1.4/reportRmd/R/deprecated.R | 1 reportRmd-0.1.4/reportRmd/R/getVarLevels.R | 17 reportRmd-0.1.4/reportRmd/R/ggkmcif3.R | 98 reportRmd-0.1.4/reportRmd/R/helper.R | 997 + reportRmd-0.1.4/reportRmd/R/imports.R | 2 reportRmd-0.1.4/reportRmd/R/main.R | 2493 +++- reportRmd-0.1.4/reportRmd/R/model_registry.R | 5 reportRmd-0.1.4/reportRmd/R/predsum.R |only reportRmd-0.1.4/reportRmd/R/rm_compactsum.R | 81 reportRmd-0.1.4/reportRmd/R/rm_mvsum2.R | 645 - reportRmd-0.1.4/reportRmd/R/rm_uvsum2.R | 603 - reportRmd-0.1.4/reportRmd/README.md | 5734 ++++------ reportRmd-0.1.4/reportRmd/build/partial.rdb |binary reportRmd-0.1.4/reportRmd/build/vignette.rds |binary reportRmd-0.1.4/reportRmd/inst/doc/reportRmd.R | 135 reportRmd-0.1.4/reportRmd/inst/doc/reportRmd.Rmd | 284 reportRmd-0.1.4/reportRmd/inst/doc/reportRmd.html | 2263 ++- reportRmd-0.1.4/reportRmd/man/add_var_lvl_keys.Rd |only reportRmd-0.1.4/reportRmd/man/boxcoxfitRx.Rd | 56 reportRmd-0.1.4/reportRmd/man/clear_labels.Rd | 52 reportRmd-0.1.4/reportRmd/man/covsum.Rd | 264 reportRmd-0.1.4/reportRmd/man/crrRx.Rd | 76 reportRmd-0.1.4/reportRmd/man/ctDNA.Rd | 60 reportRmd-0.1.4/reportRmd/man/esc_rx.Rd |only reportRmd-0.1.4/reportRmd/man/eval_select_chr.Rd |only reportRmd-0.1.4/reportRmd/man/excelCol.Rd | 46 reportRmd-0.1.4/reportRmd/man/excelColLetters.Rd | 52 reportRmd-0.1.4/reportRmd/man/extract_labels.Rd | 60 reportRmd-0.1.4/reportRmd/man/figures/README-unnamed-chunk-10-1.png |binary reportRmd-0.1.4/reportRmd/man/figures/README-unnamed-chunk-11-1.png |binary reportRmd-0.1.4/reportRmd/man/figures/README-unnamed-chunk-11-2.png |binary reportRmd-0.1.4/reportRmd/man/figures/README-unnamed-chunk-12-1.png |binary reportRmd-0.1.4/reportRmd/man/figures/README-unnamed-chunk-13-1.png |binary reportRmd-0.1.4/reportRmd/man/forestplot2.Rd | 112 reportRmd-0.1.4/reportRmd/man/forestplotMV.Rd | 148 reportRmd-0.1.4/reportRmd/man/forestplotUV.Rd | 164 reportRmd-0.1.4/reportRmd/man/forestplotUVMV.Rd | 38 reportRmd-0.1.4/reportRmd/man/geoR_boxcoxfit.Rd | 68 reportRmd-0.1.4/reportRmd/man/get_model_args.Rd |only reportRmd-0.1.4/reportRmd/man/get_model_class.Rd | 2 reportRmd-0.1.4/reportRmd/man/get_uv_data.Rd |only reportRmd-0.1.4/reportRmd/man/ggkmcif.Rd | 208 reportRmd-0.1.4/reportRmd/man/hbld.Rd | 36 reportRmd-0.1.4/reportRmd/man/low_expected_counts.Rd |only reportRmd-0.1.4/reportRmd/man/m_summary.Rd | 13 reportRmd-0.1.4/reportRmd/man/model_env.Rd |only reportRmd-0.1.4/reportRmd/man/nestTable.Rd | 160 reportRmd-0.1.4/reportRmd/man/pembrolizumab.Rd | 80 reportRmd-0.1.4/reportRmd/man/plotuv.Rd | 206 reportRmd-0.1.4/reportRmd/man/predsum.Rd |only reportRmd-0.1.4/reportRmd/man/prepare_uv_terms.Rd |only reportRmd-0.1.4/reportRmd/man/refit_in_env.Rd |only reportRmd-0.1.4/reportRmd/man/rm_cifsum.Rd | 219 reportRmd-0.1.4/reportRmd/man/rm_compactsum.Rd | 12 reportRmd-0.1.4/reportRmd/man/rm_covsum.Rd | 12 reportRmd-0.1.4/reportRmd/man/rm_mvsum.Rd | 350 reportRmd-0.1.4/reportRmd/man/rm_survdiff.Rd | 168 reportRmd-0.1.4/reportRmd/man/rm_survsum.Rd | 263 reportRmd-0.1.4/reportRmd/man/rm_survtime.Rd | 226 reportRmd-0.1.4/reportRmd/man/rm_uv_mv.Rd | 172 reportRmd-0.1.4/reportRmd/man/rm_uvsum.Rd | 387 reportRmd-0.1.4/reportRmd/man/set_labels.Rd | 78 reportRmd-0.1.4/reportRmd/man/set_ref_level.Rd |only reportRmd-0.1.4/reportRmd/man/set_var_labels.Rd | 68 reportRmd-0.1.4/reportRmd/man/with_seed.Rd |only reportRmd-0.1.4/reportRmd/man/xvar_function.Rd | 138 reportRmd-0.1.4/reportRmd/tests/testthat/Rplots.pdf |only reportRmd-0.1.4/reportRmd/tests/testthat/test-cox-cluster.R |only reportRmd-0.1.4/reportRmd/tests/testthat/test-plots.R |only reportRmd-0.1.4/reportRmd/tests/testthat/test-rm_covsum-compactsum.R |only reportRmd-0.1.4/reportRmd/tests/testthat/test-rm_mvsum-include_unadjusted.R |only reportRmd-0.1.4/reportRmd/tests/testthat/test-rm_uvsum.R |only reportRmd-0.1.4/reportRmd/tests/testthat/test-survsum-cifsum-predsum.R |only reportRmd-0.1.4/reportRmd/tests/testthat/test_calculations.R | 869 + reportRmd-0.1.4/reportRmd/vignettes/images/forestmv.png.png |only reportRmd-0.1.4/reportRmd/vignettes/images/forestmv_unadj.png |only reportRmd-0.1.4/reportRmd/vignettes/reportRmd.Rmd | 284 86 files changed, 11807 insertions(+), 8241 deletions(-)
Title: Bayesian Multinomial Logistic Normal Regression
Description: Provides methods for fitting and inspection of Bayesian Multinomial Logistic Normal Models using MAP estimation and Laplace Approximation as developed in Silverman et. Al. (2022) <https://www.jmlr.org/papers/v23/19-882.html>. Key functionality is implemented in C++ for scalability. 'fido' replaces the previous package 'stray'.
Author: Justin Silverman [aut, cre],
Kim Roche [ctb],
Michelle Nixon [ctb]
Maintainer: Justin Silverman
<JustinSilverman@psu.edu>
Diff between fido versions 1.1.2 dated 2025-02-27 and 1.1.5 dated 2026-10-30
DESCRIPTION | 10 MD5 | 145 +- NAMESPACE | 1 NEWS.md | 96 + R/R2.R | 131 +- R/RISK_CCFA.R | 8 R/RcppExports.R | 50 R/bassetfit_s3.R | 2 R/build_info.R |only R/driver-utils.R | 12 R/fido_transforms.R | 16 R/fidofit_methods.R | 2 R/fit_basset.R | 38 R/fit_maltipoo.R | 5 R/fit_orthus.R | 33 R/fit_pibble.R | 26 R/orthus_sim.R | 36 R/pibble_plotting.R | 2 build/partial.rdb |only build/vignette.rds |binary configure | 1490 +++++++++--------------- configure.ac | 161 ++ inst/doc/introduction-to-fido.Rmd | 11 inst/doc/introduction-to-fido.html | 93 - inst/doc/mitigating-pcrbias.R | 10 inst/doc/mitigating-pcrbias.Rmd | 10 inst/doc/mitigating-pcrbias.html | 14 inst/doc/non-linear-models.html | 55 inst/doc/orthus.R | 2 inst/doc/orthus.Rmd | 2 inst/doc/orthus.html | 45 inst/doc/picking_priors.Rmd | 16 inst/doc/picking_priors.html | 40 inst/include/LaplaceApproximation.h | 8 inst/include/MaltipooCollapsed.h | 4 inst/include/MatDist.h | 13 inst/include/MatDist_thread.h | 4 inst/include/MklThreads.h |only inst/include/MultDirichletBoot.h | 6 inst/include/PibbleCollapsed.h | 2 inst/include/fido.h | 21 man/RISK_CCFA.Rd | 2 man/RISK_CCFA_otu.Rd | 2 man/RISK_CCFA_sam.Rd | 2 man/RISK_CCFA_tax.Rd | 2 man/basset_fit.Rd | 21 man/fido_build_info.Rd |only man/fido_package.Rd | 2 man/loglikPibbleCollapsed.Rd | 15 man/mongrel-deprecated.Rd | 3 man/optimPibbleCollapsed.Rd | 12 man/orthus_fit.Rd | 26 man/orthus_sim.Rd | 8 man/pibble_fit.Rd | 19 man/r2.Rd | 5 man/uncollapsePibble.Rd | 9 man/uncollapsePibble_sigmaKnown.Rd | 2 src/Makevars.in | 13 src/MaltipooCollapsed_Optim.cpp | 10 src/PibbleCollapsed_LGH.cpp | 9 src/PibbleCollapsed_Optim.cpp | 29 src/PibbleCollapsed_Uncollapse.cpp | 23 src/PibbleCollapsed_Uncollapse_sigmaKnown.cpp | 9 src/RcppExports.cpp | 25 src/build_info.cpp |only src/test_LaplaceApproximation.cpp | 4 tests/testthat/test-basset-component-sampling.R |only tests/testthat/test-build-info.R |only tests/testthat/test-df-shared-paths.R |only tests/testthat/test-iw-df.R |only tests/testthat/test-laplaceapproximation.R | 73 + tests/testthat/test-mkl-threading.R |only tests/testthat/test-multdirichletboot.R | 7 tests/testthat/test-orthus-sim.R |only tests/testthat/test-pibble.R | 42 vignettes/introduction-to-fido.Rmd | 11 vignettes/mitigating-pcrbias.Rmd | 10 vignettes/orthus.Rmd | 2 vignettes/picking_priors.Rmd | 16 79 files changed, 1677 insertions(+), 1356 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: NNS (Nonlinear Nonparametric Statistics) leverages partial moments – the fundamental elements of variance that asymptotically approximate the area under f(x) – to provide a robust foundation for nonlinear analysis while maintaining linear equivalences. Designed for real-world data that violates symmetry, linearity, or distributional assumptions, NNS delivers a comprehensive suite of advanced statistical techniques, including: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic superiority / dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995, Second edition: <https://ovvo-financial.github.io/NNS/book/>).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb],
Rasheed Khoshnaw [ctb]
Maintainer: Fred Viole <ovvo.open.source@gmail.com>
Diff between NNS versions 13.2 dated 2026-08-03 and 13.3 dated 2026-10-30
DESCRIPTION | 8 MD5 | 14 R/ARMA.R | 2 R/NNS_VAR.R | 168 +- R/Stack.R | 3810 +++++++++++++++++++++++----------------------- man/NNS.VAR.Rd | 6 man/NNS.stack.Rd | 2 tests/testthat/Rplots.pdf |binary 8 files changed, 2037 insertions(+), 1973 deletions(-)
Title: Snow Water Equivalent Modeling with the 'Delta.snow' and
'HS2SWE' Models and Empirical Regression Models
Description: Snow water equivalent is modeled with the process based
models 'delta.snow' and 'HS2SWE' and empirical regression, which use
relationships between density and diverse at-site parameters. The
methods are described in Winkler et al. (2021)
<doi:10.5194/hess-25-1165-2021>, Magnusson et al. (2025)
<doi:10.1016/j.coldregions.2025.104435>, Guyennon et al. (2019)
<doi:10.1016/j.coldregions.2019.102859>, Pistocchi (2016)
<doi:10.1016/j.ejrh.2016.03.004>, Jonas et al. (2009)
<doi:10.1016/j.jhydrol.2009.09.021> and Sturm et al. (2010)
<doi:10.1175/2010JHM1202.1>.
Author: Harald Schellander [aut, cre, cph],
Michael Winkler [ctb, cph],
Jakob Werkgarner [ctb]
Maintainer: Harald Schellander <harald.schellander@geosphere.at>
Diff between nixmass versions 1.3.1 dated 2025-05-09 and 1.4.0 dated 2026-10-30
DESCRIPTION | 18 MD5 | 64 - NAMESPACE | 70 - NEWS | 158 +- R/hs2swe.R | 1072 +++++++++---------- R/nixmass.R | 952 ++++++++--------- R/swe.delta.snow.R | 1880 +++++++++++++++++----------------- R/swe.gu19.R | 250 ++-- R/swe.jo09.R | 354 +++--- R/swe.pi16.R | 166 +-- R/swe.st10.R | 218 +-- README.md | 72 - man/hsdata.Rd | 86 - man/nixmass.Rd | 227 ++-- man/plot.nixmass.Rd | 58 - man/summary.nixmass.Rd | 50 man/swe.delta.snow.Rd | 281 ++--- man/swe.gu19.Rd | 102 - man/swe.jo09.Rd | 78 - man/swe.pi16.Rd | 82 - man/swe.st10.Rd | 80 - tests/spelling.R | 6 tests/testthat.R | 24 tests/testthat/Rplots.pdf |binary tests/testthat/test-hs2swe.R | 456 ++++---- tests/testthat/test-nixmass.R | 238 ++-- tests/testthat/test-plot.nixmass.R | 248 ++-- tests/testthat/test-summary.nixmass.R | 128 +- tests/testthat/test-swe.delta.snow.R | 416 +++---- tests/testthat/test-swe.gu19.R | 236 ++-- tests/testthat/test-swe.jo09.R | 222 ++-- tests/testthat/test-swe.pi16.R | 206 +-- tests/testthat/test-swe.st10.R | 190 +-- 33 files changed, 4403 insertions(+), 4285 deletions(-)
Title: Standardized Metrics Based on the CDC and WHO Growth Charts
Description: Calculation of sex- and age-standardized growth metrics using
the LMS method (lambda-mu-sigma). The package includes functions for the CDC
Growth Charts (cdc_z) and the WHO Charts (who_z). Because CDC recommends
using the WHO Charts for children under 24 months and the CDC Charts among
older children, there can be large differences at age 2.0 years. For example,
a girl weighing 9.9 kg would be at the WHO 10th percentile on the day before
her second birthday, but at the CDC 2nd percentile the following day.
The 'gradual_z' function reduces the differences among 2- to 5-year-olds
by taking a weighted average of the CDC and WHO z-scores.
Author: David Freedman [aut, cre] ,
Carrie Daymont [ctb]
Maintainer: David Freedman <DavidSFreedman@gmail.com>
Diff between cdcanthro versions 0.4.0 dated 2026-08-31 and 0.5.0 dated 2026-10-30
DESCRIPTION | 11 +- MD5 | 34 +++++--- NEWS.md | 12 ++ R/cdc_z.R | 183 +++++++++++++++++++++------------------------ R/grad_Z.R | 12 -- R/utils-anthro.R | 180 ++++++++++++++------------------------------ R/who_z.R | 209 ++++++++++++++++++++++++---------------------------- R/zzz.R | 6 - man/cdc_ref_data.Rd | 5 - man/cdc_z.Rd | 56 +++++++------ man/gradual_z.Rd | 10 +- man/who_ref_data.Rd | 3 man/who_z.Rd | 60 ++++++++------ tests |only 14 files changed, 364 insertions(+), 417 deletions(-)
Title: Automatic Plotting and Theming of Many Graphs
Description: Visual exploration and presentation of networks should not be difficult.
This package includes functions for plotting networks and network-related metrics with sensible and pretty defaults.
It includes 'ggplot2'-based plot methods for many popular network package classes.
It also includes some novel layout algorithms, and options for straightforward, consistent themes.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between autograph versions 1.2.6 dated 2026-10-07 and 1.2.8 dated 2026-10-30
DESCRIPTION | 10 +-- MD5 | 80 +++++++++++++------------ NAMESPACE | 4 + NEWS.md | 30 +++++++++ R/data_precooked.R | 8 ++ R/graph_backbone.R | 22 ++++++- R/graph_checks.R | 6 + R/graph_edges.R | 2 R/graph_layout.R | 11 +++ R/graphr.R | 8 +- R/layout_layered.R | 2 R/layout_spatial.R |only R/plot_summaries.R | 4 + R/plot_tests.R | 87 ++++++++++++---------------- R/theme_fonts.R | 4 - README.md | 21 ++++++ data/res_infernet_reg.rda |only inst/tutorials/autograph1/visualisation.Rmd | 16 ++--- man/check_layout.Rd | 1 man/completion.Rd | 1 man/layout_concentric.Rd | 1 man/layout_configuration.Rd | 1 man/layout_correspondence.Rd | 1 man/layout_layered.Rd | 3 man/layout_levels.Rd | 1 man/layout_matching.Rd | 1 man/layout_scaling.Rd | 1 man/layout_spatial.Rd |only man/layout_valence.Rd | 1 man/made_earlier.Rd | 5 + man/model_mrqap.Rd | 18 ++++- man/plot_graphr.Rd | 3 man/plot_graphs.Rd | 1 man/plot_grapht.Rd | 1 tests/testthat/Rplots.pdf |binary tests/testthat/helper-functional.R | 13 +++- tests/testthat/test-functional_plots.R | 2 tests/testthat/test-graph_backbone.R | 5 + tests/testthat/test-graphr.R | 29 +++++---- tests/testthat/test-grapht.R | 2 tests/testthat/test-layout_layered.R | 6 - tests/testthat/test-layout_spatial.R |only tests/testthat/test-theme_set.R | 3 43 files changed, 280 insertions(+), 135 deletions(-)
Title: Self-Validated Ensemble Models with Lasso and Relaxed Elastic
Net Regression
Description: Implements the self-validated elastic-net and relaxed elastic-net ensemble modeling and multi-response optimization workflow described in Karl (2026) <doi:10.1016/j.chemolab.2026.105660>. Self-validated ensemble models (SVEM; Lemkus et al. (2021) <doi:10.1016/j.chemolab.2021.104439>) are fitted for small-sample design-of-experiments and related workflows using 'glmnet' (Friedman et al. (2010) <doi:10.18637/jss.v033.i01>). Fractional random-weight bootstraps with anti-correlated validation copies are used to tune penalty paths by validation-weighted AIC/BIC. Supports Gaussian and binomial responses, deterministic expansion helpers for shared factor spaces, prediction with bootstrap uncertainty, and a random-search optimizer that respects mixture constraints and combines multiple responses via desirability functions. Also includes a permutation-based whole-model test for Gaussian SVEM fits (Karl (2024) <doi:10.1016/j.chemolab.2024.105122>). Package code was drafte [...truncated...]
Author: Andrew T. Karl [cre, aut]
Maintainer: Andrew T. Karl <akarl@asu.edu>
Diff between SVEMnet versions 3.6.2 dated 2026-09-18 and 3.6.3 dated 2026-10-30
DESCRIPTION | 12 MD5 | 79 +++--- NAMESPACE | 82 +++--- NEWS | 11 R/SVEMnet.R | 171 +++++++------ R/bigexp.R | 1 R/coef.R | 4 R/edf.R | 18 - R/export_candidates_csv.R | 7 R/fitting_paths.R | 6 R/forward_selection.R | 118 +++++++-- R/glmnet_compat.R | 338 ++++++++++++++++++++++++++- R/glmnet_with_cv.R | 83 +++--- R/ij_diagnostic.R | 12 R/predict.cv.R | 16 - R/predict.svem_lasso.R | 21 - R/spec_limit_utility.R | 20 - R/svem_random_table_multi.R | 14 - R/svem_score_random.R | 133 ++++++++-- R/svem_select_score_from_table.R | 10 R/svem_significance_test_parallel.R | 44 ++- R/svem_thompson_batch.R | 16 + R/svem_wmt_multi.R | 50 +++ man/SVEMnet-package.Rd | 3 man/SVEMnet.Rd | 60 +++- man/glmnet_with_cv.Rd | 11 man/lipid_screen.Rd | 3 man/svem_forward.Rd | 10 man/svem_nonzero.Rd | 6 man/svem_random_table_multi.Rd | 2 man/svem_score_random.Rd | 17 + man/svem_significance_test_parallel.Rd | 16 - man/svem_thompson_batch.Rd | 8 man/svem_wmt_multi.Rd | 19 + tests/testthat/test-bugfixes-3.3.1.R | 4 tests/testthat/test-complexity-edf.R | 6 tests/testthat/test-forward-selection.R | 3 tests/testthat/test-stabilization-callback.R |only tests/testthat/test-stabilization-edf.R |only tests/testthat/test-stabilization-fit.R |only tests/testthat/test-stabilization-numerics.R |only tests/testthat/test-stabilization-oracle.R |only tests/testthat/test-stabilization-scoring.R |only tests/testthat/test-stabilization-wmt.R |only 44 files changed, 1051 insertions(+), 383 deletions(-)
Title: Urban Centrality Index
Description: Calculates the Urban Centrality Index (UCI) as in Pereira et al.,
(2013) <doi:10.1111/gean.12002>. The UCI measures the
extent to which the spatial organization of a city or region varies
from extreme polycentric to extreme monocentric in a continuous
scale from 0 to 1. Values closer to 0 indicate more polycentric patterns
and values closer to 1 indicate a more monocentric urban form.
Author: Rafael H. M. Pereira [aut, cre]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between uci versions 0.3.1 dated 2025-11-07 and 1.0.0 dated 2026-10-30
uci-0.3.1/uci/tests/tests_rafa |only uci-1.0.0/uci/DESCRIPTION | 19 - uci-1.0.0/uci/MD5 | 42 +- uci-1.0.0/uci/NAMESPACE | 2 uci-1.0.0/uci/NEWS.md | 18 + uci-1.0.0/uci/R/internal_fun.R | 339 ++++++++++++-------- uci-1.0.0/uci/R/remove_islands.R |only uci-1.0.0/uci/R/uci.R | 532 ++++++++++++++++++++----------- uci-1.0.0/uci/R/uci_package.R | 44 +- uci-1.0.0/uci/README.md | 189 +++++------ uci-1.0.0/uci/build/partial.rdb |binary uci-1.0.0/uci/build/vignette.rds |binary uci-1.0.0/uci/inst/doc/uci.R | 60 ++- uci-1.0.0/uci/inst/doc/uci.Rmd | 93 ++++- uci-1.0.0/uci/inst/doc/uci.html | 244 +++++++++----- uci-1.0.0/uci/inst/extdata/grid_rio.rds |only uci-1.0.0/uci/man/remove_islands.Rd |only uci-1.0.0/uci/man/uci.Rd | 255 ++++++++------- uci-1.0.0/uci/tests/testthat/test_uci.R | 539 ++++++++++++++++++++++++++++++-- uci-1.0.0/uci/vignettes/uci.Rmd | 93 ++++- 20 files changed, 1739 insertions(+), 730 deletions(-)
Title: Interface to 'Vamp' Audio Analysis Plugins
Description: Provides an interface to the 'Vamp' audio analysis plugin system
<https://www.vamp-plugins.org/> developed by Queen Mary University of London's
Centre for Digital Music. Enables loading and running 'Vamp' plugins for various audio analysis
tasks including tempo detection, onset detection, spectral analysis, and
audio feature extraction. Supports mono and stereo audio with automatic
channel adaptation and domain conversion.
Author: Ed Baker [aut, cre] ,
Authors of vamp-sdk [cph] ,
Mark Borgerding [cph]
Maintainer: Ed Baker <ed@ebaker.me.uk>
Diff between ReVAMP versions 1.0.1 dated 2025-12-22 and 1.1.0 dated 2026-10-30
DESCRIPTION | 10 MD5 | 306 - NAMESPACE | 21 NEWS.md | 12 R/RcppExports.R | 12 R/vamp_functions.R | 82 build/vignette.rds |binary inst/CITATION | 4 inst/WORDLIST | 3 inst/vamp/CHANGELOG | 348 - inst/vamp/COPYING | 130 inst/vamp/INSTALL | 28 inst/vamp/Makefile.in | 886 +- inst/vamp/README | 530 - inst/vamp/README.compat | 204 inst/vamp/acinclude.m4 | 286 inst/vamp/build/Doxyfile | 3044 +++++----- inst/vamp/build/Makefile.mingw32 | 726 +- inst/vamp/build/Makefile.mingw64 | 726 +- inst/vamp/build/Makefile.osx | 746 +- inst/vamp/build/README.linux | 148 inst/vamp/build/README.msvc | 242 inst/vamp/build/README.osx | 198 inst/vamp/build/docker/Dockerfile_v2.10_ubuntu1604 | 54 inst/vamp/build/docker/Dockerfile_v2.7.1_ubuntu1404 | 52 inst/vamp/build/docker/Dockerfile_v2.7.1_ubuntu1604 | 52 inst/vamp/build/docker/Dockerfile_v2.7_ubuntu1404 | 52 inst/vamp/build/docker/Dockerfile_v2.7_ubuntu1604 | 52 inst/vamp/build/docker/Dockerfile_v2.8_ubuntu1604 | 54 inst/vamp/build/docker/Dockerfile_v2.9_ubuntu1604 | 54 inst/vamp/build/docker/build.sh | 86 inst/vamp/build/libvamp-hostsdk.la.in | 28 inst/vamp/build/libvamp-sdk.la.in | 28 inst/vamp/build/update-version.sh | 264 inst/vamp/build/vamp-plugin.list | 2 inst/vamp/build/vamp-plugin.map | 8 inst/vamp/configure.ac | 126 inst/vamp/examples/AmplitudeFollower.cpp | 506 - inst/vamp/examples/AmplitudeFollower.h | 168 inst/vamp/examples/FixedTempoEstimator.cpp | 1454 ++-- inst/vamp/examples/FixedTempoEstimator.h | 168 inst/vamp/examples/PercussionOnsetDetector.cpp | 574 - inst/vamp/examples/PercussionOnsetDetector.h | 180 inst/vamp/examples/PowerSpectrum.cpp | 340 - inst/vamp/examples/PowerSpectrum.h | 160 inst/vamp/examples/SpectralCentroid.cpp | 392 - inst/vamp/examples/SpectralCentroid.h | 156 inst/vamp/examples/ZeroCrossing.cpp | 392 - inst/vamp/examples/ZeroCrossing.h | 156 inst/vamp/examples/plugins.cpp | 138 inst/vamp/examples/vamp-example-plugins.cat | 12 inst/vamp/examples/vamp-example-plugins.n3 | 644 +- inst/vamp/host/system.h | 150 inst/vamp/host/test-c.c | 80 inst/vamp/host/vamp-simple-host.cpp | 1726 ++--- inst/vamp/pkgconfig/vamp-hostsdk.pc.in | 20 inst/vamp/pkgconfig/vamp-sdk.pc.in | 20 inst/vamp/pkgconfig/vamp.pc.in | 20 inst/vamp/rdf/README | 14 inst/vamp/rdf/ToDo | 8 inst/vamp/rdf/doc/glance.htm | 2 inst/vamp/rdf/doc/vamp.html | 1624 ++--- inst/vamp/rdf/doc/vamp.pl | 74 inst/vamp/rdf/generator/vamp-rdf-template-generator.cpp | 1036 +-- inst/vamp/rdf/vamp.n3 | 1516 ++-- inst/vamp/rdf/vamp.rdf | 2406 +++---- inst/vamp/skeleton/Makefile.inc | 146 inst/vamp/skeleton/Makefile.linux | 76 inst/vamp/skeleton/Makefile.mingw32 | 86 inst/vamp/skeleton/Makefile.osx | 86 inst/vamp/skeleton/MyPlugin.cpp | 440 - inst/vamp/skeleton/MyPlugin.h | 118 inst/vamp/skeleton/plugins.cpp | 74 inst/vamp/skeleton/vamp-plugin.list | 2 inst/vamp/skeleton/vamp-plugin.map | 8 inst/vamp/src/vamp-hostsdk/Files.cpp | 860 +- inst/vamp/src/vamp-hostsdk/Files.h | 144 inst/vamp/src/vamp-hostsdk/PluginBufferingAdapter.cpp | 1526 ++--- inst/vamp/src/vamp-hostsdk/PluginChannelAdapter.cpp | 540 - inst/vamp/src/vamp-hostsdk/PluginHostAdapter.cpp | 938 +-- inst/vamp/src/vamp-hostsdk/PluginInputDomainAdapter.cpp | 1054 +-- inst/vamp/src/vamp-hostsdk/PluginLoader.cpp | 1220 ++-- inst/vamp/src/vamp-hostsdk/PluginSummarisingAdapter.cpp | 1978 +++--- inst/vamp/src/vamp-hostsdk/PluginWrapper.cpp | 412 - inst/vamp/src/vamp-hostsdk/RealTime.cpp | 78 inst/vamp/src/vamp-hostsdk/Window.h | 334 - inst/vamp/src/vamp-hostsdk/acsymbols.c | 34 inst/vamp/src/vamp-hostsdk/host-c.cpp | 302 inst/vamp/src/vamp-sdk/FFT.cpp | 528 - inst/vamp/src/vamp-sdk/FFTimpl.cpp | 60 inst/vamp/src/vamp-sdk/PluginAdapter.cpp | 2022 +++--- inst/vamp/src/vamp-sdk/RealTime.cpp | 498 - inst/vamp/src/vamp-sdk/acsymbols.c | 34 inst/vamp/src/vamp-sdk/ext/vamp_kiss_fft.c | 826 +- inst/vamp/src/vamp-sdk/ext/vamp_kiss_fft.h | 218 inst/vamp/src/vamp-sdk/ext/vamp_kiss_fft_guts.h | 204 inst/vamp/src/vamp-sdk/ext/vamp_kiss_fftr.c | 306 - inst/vamp/src/vamp-sdk/ext/vamp_kiss_fftr.h | 112 inst/vamp/test/expected/vamp-test-plugin-freq_curve-fsr-mixed.txt | 22 inst/vamp/test/expected/vamp-test-plugin-freq_curve-fsr-timed.txt | 22 inst/vamp/test/expected/vamp-test-plugin-freq_curve-fsr.txt | 22 inst/vamp/test/expected/vamp-test-plugin-freq_curve-oss.txt | 42 inst/vamp/test/expected/vamp-test-plugin-freq_curve-vsr.txt | 20 inst/vamp/test/expected/vamp-test-plugin-freq_grid-fsr.txt | 22 inst/vamp/test/expected/vamp-test-plugin-freq_grid-oss.txt | 42 inst/vamp/test/expected/vamp-test-plugin-freq_input-summary.txt | 1682 ++--- inst/vamp/test/expected/vamp-test-plugin-freq_input-timestamp.txt | 1682 ++--- inst/vamp/test/expected/vamp-test-plugin-freq_instants.txt | 20 inst/vamp/test/expected/vamp-test-plugin-freq_notes-regions.txt | 20 inst/vamp/test/expected/vamp-test-plugin_curve-fsr-mixed.txt | 22 inst/vamp/test/expected/vamp-test-plugin_curve-fsr-timed.txt | 22 inst/vamp/test/expected/vamp-test-plugin_curve-fsr.txt | 22 inst/vamp/test/expected/vamp-test-plugin_curve-oss.txt | 42 inst/vamp/test/expected/vamp-test-plugin_curve-vsr.txt | 22 inst/vamp/test/expected/vamp-test-plugin_grid-fsr.txt | 22 inst/vamp/test/expected/vamp-test-plugin_grid-oss.txt | 42 inst/vamp/test/expected/vamp-test-plugin_input-summary.txt | 844 +- inst/vamp/test/expected/vamp-test-plugin_input-timestamp.txt | 844 +- inst/vamp/test/expected/vamp-test-plugin_instants.txt | 22 inst/vamp/test/expected/vamp-test-plugin_notes-regions.txt | 22 inst/vamp/test/run-test-plugin-regression.sh | 146 inst/vamp/test/testsignal.ipynb | 472 - inst/vamp/vamp-hostsdk/Plugin.h | 94 inst/vamp/vamp-hostsdk/PluginBase.h | 94 inst/vamp/vamp-hostsdk/PluginBufferingAdapter.h | 392 - inst/vamp/vamp-hostsdk/PluginChannelAdapter.h | 300 inst/vamp/vamp-hostsdk/PluginHostAdapter.h | 246 inst/vamp/vamp-hostsdk/PluginInputDomainAdapter.h | 474 - inst/vamp/vamp-hostsdk/PluginLoader.h | 567 - inst/vamp/vamp-hostsdk/PluginSummarisingAdapter.h | 396 - inst/vamp/vamp-hostsdk/PluginWrapper.h | 308 - inst/vamp/vamp-hostsdk/RealTime.h | 92 inst/vamp/vamp-hostsdk/host-c.h | 294 inst/vamp/vamp-hostsdk/hostguard.h | 146 inst/vamp/vamp-hostsdk/vamp-hostsdk.h | 106 inst/vamp/vamp-sdk/FFT.h | 406 - inst/vamp/vamp-sdk/Plugin.h | 918 +-- inst/vamp/vamp-sdk/PluginAdapter.h | 242 inst/vamp/vamp-sdk/PluginBase.h | 524 - inst/vamp/vamp-sdk/RealTime.h | 334 - inst/vamp/vamp-sdk/plugguard.h | 204 inst/vamp/vamp-sdk/vamp-sdk.h | 94 inst/vamp/vamp/vamp.h | 776 +- man/ReVAMP-package.Rd | 118 man/runPlugin.Rd | 373 - man/runPlugins.Rd | 75 man/vampInfo.Rd | 48 man/vampPaths.Rd | 47 man/vampPluginParams.Rd | 80 man/vampPlugins.Rd | 86 man/vampResetCache.Rd |only src/PluginLoader.cpp | 9 src/R_host.cpp | 202 src/RcppExports.cpp | 28 tests/testthat/test-segment-length.R |only 155 files changed, 26771 insertions(+), 26446 deletions(-)
Title: Deep Learning with 'mlr3'
Description: Deep Learning library that extends the mlr3 framework by building
upon the 'torch' package. It makes it convenient to build, train,
and evaluate deep learning models without having to worry about low level
details. Custom architectures can be created using the graph language
defined in 'mlr3pipelines'.
Author: Sebastian Fischer [cre, aut] ,
Bernd Bischl [ctb] ,
Lukas Burk [ctb] ,
Martin Binder [aut],
Florian Pfisterer [ctb] ,
Carson Zhang [ctb]
Maintainer: Sebastian Fischer <sebf.fischer@gmail.com>
Diff between mlr3torch versions 0.3.3 dated 2026-01-31 and 0.4.0 dated 2026-10-30
DESCRIPTION | 66 - MD5 | 676 ++++++---- NAMESPACE | 99 + NEWS.md | 147 ++ R/CallbackSet.R | 51 R/CallbackSetCheckpoint.R | 249 +++- R/CallbackSetEarlyStopping.R | 100 + R/CallbackSetHistory.R | 10 R/CallbackSetLRScheduler.R | 141 ++ R/CallbackSetProgress.R | 49 R/CallbackSetTB.R | 14 R/CallbackSetUnfreeze.R | 45 R/ContextTorch.R | 54 R/DataDescriptor.R | 26 R/GraphLearnerTorch.R |only R/LearnerFTTransformer.R | 40 R/LearnerTorch.R | 346 ++++- R/LearnerTorchFeatureless.R | 14 R/LearnerTorchMLP.R | 12 R/LearnerTorchModel.R | 49 R/LearnerTorchModule.R | 37 R/LearnerTorchRealMLP.R |only R/LearnerTorchTabM.R |only R/LearnerTorchTabResNet.R | 14 R/LearnerTorchVision.R | 526 ++++++-- R/MeasureTorch.R |only R/ModelDescriptor.R | 7 R/PipeOpModule.R | 5 R/PipeOpTaskPreprocTorch.R | 29 R/PipeOpTorch.R | 349 ++--- R/PipeOpTorchActivation.R | 159 +- R/PipeOpTorchAdaptiveAvgPool.R | 25 R/PipeOpTorchAdaptiveMaxPool.R |only R/PipeOpTorchAvgPool.R | 54 R/PipeOpTorchBatchNorm.R | 9 R/PipeOpTorchBlock.R | 28 R/PipeOpTorchCallbacks.R | 1 R/PipeOpTorchConv.R | 42 R/PipeOpTorchConvTranspose.R | 49 R/PipeOpTorchDropout.R | 93 + R/PipeOpTorchFTCLS.R | 10 R/PipeOpTorchFTTransformerBlock.R | 74 + R/PipeOpTorchFn.R | 14 R/PipeOpTorchGroupNorm.R |only R/PipeOpTorchHead.R | 18 R/PipeOpTorchIdentity.R | 2 R/PipeOpTorchIngress.R | 8 R/PipeOpTorchLayerNorm.R | 17 R/PipeOpTorchLinear.R | 15 R/PipeOpTorchLoss.R | 3 R/PipeOpTorchMaxPool.R | 71 - R/PipeOpTorchMerge.R | 71 - R/PipeOpTorchModel.R | 46 R/PipeOpTorchMultiheadAttention.R |only R/PipeOpTorchOptimizer.R | 1 R/PipeOpTorchRecurrent.R |only R/PipeOpTorchReshape.R | 225 ++- R/PipeOpTorchSoftmax.R | 132 ++ R/PipeOpTorchTokenizer.R | 46 R/PipeOpTorchTransformerEncoderLayer.R |only R/PredictionTorch.R |only R/TaskClassif_cifar.R | 21 R/TaskClassif_mnist.R | 2 R/TaskTorch.R |only R/TorchCallback.R | 40 R/TorchLoss.R | 60 R/TorchOptimizer.R | 50 R/aaa.R | 2 R/bibentries.R | 324 ++++- R/cache.R | 10 R/lazy_tensor.R | 22 R/learner_torch_methods.R | 640 +++++++++- R/materialize.R | 76 - R/multi_tensor_dataset.R | 18 R/nn.R | 12 R/nn_graph.R | 142 +- R/paramset_torchlearner.R | 83 + R/pipeop_torch.R |only R/preprocess.R | 397 +++++- R/rd_info.R | 10 R/shape.R | 710 ++++++++++- R/task_dataset.R | 199 ++- R/utils.R | 171 +- R/with_torch_settings.R | 8 R/zzz.R | 54 README.md | 109 + build/partial.rdb |binary inst/COPYRIGHTS | 79 + man/DataDescriptor.Rd | 149 +- man/GraphLearnerTorch.Rd |only man/ModelDescriptor.Rd | 22 man/PipeOpPreprocTorchTrafoNop.Rd | 2 man/PredictionTorch.Rd |only man/TorchCallback.Rd | 156 +- man/TorchDescriptor.Rd | 186 +-- man/TorchIngressToken.Rd | 16 man/TorchLoss.Rd | 189 +-- man/TorchOptimizer.Rd | 165 +- man/as_lazy_tensor.Rd | 4 man/as_learner_torch.Rd |only man/as_task_torch.Rd |only man/as_torch_callback.Rd | 10 man/as_torch_callbacks.Rd | 22 man/as_torch_loss.Rd | 44 man/as_torch_optimizer.Rd | 28 man/assert_dim_in_range.Rd |only man/assert_known_dims.Rd |only man/assert_ndim.Rd |only man/assert_not_batch_dim.Rd |only man/assert_positive_extent.Rd |only man/assert_same_batch_size.Rd |only man/assert_same_ndim.Rd |only man/assert_shape.Rd |only man/assert_shapes.Rd |only man/auto_device.Rd | 5 man/batchgetter_categ.Rd | 3 man/callback_set.Rd | 17 man/encode_prediction.Rd |only man/figures/logo.png |only man/figures/logo.svg | 272 ++-- man/get_batch_constructor.Rd |only man/get_batch_size.Rd |only man/get_target_batchgetter.Rd |only man/infer_shapes.Rd | 25 man/lazy_tensor.Rd | 9 man/materialize.Rd | 12 man/materialize_internal.Rd | 13 man/mlr3torch-package.Rd | 6 man/mlr3torch_callbacks.Rd | 21 man/mlr3torch_losses.Rd | 23 man/mlr3torch_optimizers.Rd | 23 man/mlr_backends_lazy.Rd | 239 +-- man/mlr_callback_set.Rd | 171 +- man/mlr_callback_set.checkpoint.Rd | 219 ++- man/mlr_callback_set.history.Rd | 135 +- man/mlr_callback_set.lr_scheduler.Rd | 157 +- man/mlr_callback_set.lr_scheduler_one_cycle.Rd | 103 - man/mlr_callback_set.lr_scheduler_reduce_on_plateau.Rd | 115 + man/mlr_callback_set.progress.Rd | 224 ++- man/mlr_callback_set.tb.Rd | 118 + man/mlr_callback_set.unfreeze.Rd | 179 +- man/mlr_context_torch.Rd | 202 +-- man/mlr_learners.ft_transformer.Rd | 123 + man/mlr_learners.mlp.Rd | 127 +- man/mlr_learners.module.Rd | 175 +- man/mlr_learners.realmlp.Rd |only man/mlr_learners.tab_resnet.Rd | 131 +- man/mlr_learners.tabm.Rd |only man/mlr_learners.torch_featureless.Rd | 121 + man/mlr_learners.torchvision.Rd | 255 ++-- man/mlr_learners_torch.Rd | 634 +++++++--- man/mlr_learners_torch_image.Rd | 146 +- man/mlr_learners_torch_model.Rd | 181 +- man/mlr_measures_torch.Rd |only man/mlr_measures_torch.default.Rd |only man/mlr_pipeops_augment_center_crop.Rd | 7 man/mlr_pipeops_augment_color_jitter.Rd | 5 man/mlr_pipeops_augment_crop.Rd | 15 man/mlr_pipeops_augment_hflip.Rd | 7 man/mlr_pipeops_augment_random_affine.Rd | 5 man/mlr_pipeops_augment_random_choice.Rd | 5 man/mlr_pipeops_augment_random_crop.Rd | 5 man/mlr_pipeops_augment_random_horizontal_flip.Rd | 5 man/mlr_pipeops_augment_random_order.Rd | 5 man/mlr_pipeops_augment_random_resized_crop.Rd | 5 man/mlr_pipeops_augment_random_vertical_flip.Rd | 5 man/mlr_pipeops_augment_resized_crop.Rd | 15 man/mlr_pipeops_augment_rotate.Rd | 5 man/mlr_pipeops_augment_vflip.Rd | 7 man/mlr_pipeops_module.Rd | 132 +- man/mlr_pipeops_nn_adaptive_avg_pool1d.Rd | 162 -- man/mlr_pipeops_nn_adaptive_avg_pool2d.Rd | 162 -- man/mlr_pipeops_nn_adaptive_avg_pool3d.Rd | 162 -- man/mlr_pipeops_nn_adaptive_max_pool1d.Rd |only man/mlr_pipeops_nn_adaptive_max_pool2d.Rd |only man/mlr_pipeops_nn_adaptive_max_pool3d.Rd |only man/mlr_pipeops_nn_avg_pool1d.Rd | 169 -- man/mlr_pipeops_nn_avg_pool2d.Rd | 169 -- man/mlr_pipeops_nn_avg_pool3d.Rd | 169 -- man/mlr_pipeops_nn_batch_norm1d.Rd | 160 -- man/mlr_pipeops_nn_batch_norm2d.Rd | 160 -- man/mlr_pipeops_nn_batch_norm3d.Rd | 160 -- man/mlr_pipeops_nn_block.Rd | 173 -- man/mlr_pipeops_nn_celu.Rd | 160 -- man/mlr_pipeops_nn_conv1d.Rd | 160 -- man/mlr_pipeops_nn_conv2d.Rd | 160 -- man/mlr_pipeops_nn_conv3d.Rd | 160 -- man/mlr_pipeops_nn_conv_transpose1d.Rd | 165 -- man/mlr_pipeops_nn_conv_transpose2d.Rd | 165 -- man/mlr_pipeops_nn_conv_transpose3d.Rd | 165 -- man/mlr_pipeops_nn_dropout.Rd | 160 -- man/mlr_pipeops_nn_dropout2d.Rd |only man/mlr_pipeops_nn_dropout3d.Rd |only man/mlr_pipeops_nn_elu.Rd | 160 -- man/mlr_pipeops_nn_flatten.Rd | 168 -- man/mlr_pipeops_nn_fn.Rd | 100 - man/mlr_pipeops_nn_ft_cls.Rd | 167 -- man/mlr_pipeops_nn_ft_transformer_block.Rd | 185 +- man/mlr_pipeops_nn_geglu.Rd | 160 -- man/mlr_pipeops_nn_gelu.Rd | 160 -- man/mlr_pipeops_nn_glu.Rd | 160 -- man/mlr_pipeops_nn_group_norm.Rd |only man/mlr_pipeops_nn_gru.Rd |only man/mlr_pipeops_nn_hardshrink.Rd | 162 -- man/mlr_pipeops_nn_hardsigmoid.Rd | 160 -- man/mlr_pipeops_nn_hardtanh.Rd | 160 -- man/mlr_pipeops_nn_head.Rd | 172 -- man/mlr_pipeops_nn_identity.Rd | 160 -- man/mlr_pipeops_nn_layer_norm.Rd | 160 -- man/mlr_pipeops_nn_leaky_relu.Rd | 160 -- man/mlr_pipeops_nn_linear.Rd | 160 -- man/mlr_pipeops_nn_log_sigmoid.Rd | 160 -- man/mlr_pipeops_nn_log_softmax.Rd |only man/mlr_pipeops_nn_lstm.Rd |only man/mlr_pipeops_nn_max_pool1d.Rd | 176 -- man/mlr_pipeops_nn_max_pool2d.Rd | 176 -- man/mlr_pipeops_nn_max_pool3d.Rd | 176 -- man/mlr_pipeops_nn_merge.Rd | 178 -- man/mlr_pipeops_nn_merge_cat.Rd | 177 -- man/mlr_pipeops_nn_merge_prod.Rd | 163 -- man/mlr_pipeops_nn_merge_sum.Rd | 232 --- man/mlr_pipeops_nn_multihead_attention.Rd |only man/mlr_pipeops_nn_prelu.Rd | 170 -- man/mlr_pipeops_nn_recurrent.Rd |only man/mlr_pipeops_nn_reglu.Rd | 160 -- man/mlr_pipeops_nn_relu.Rd | 160 -- man/mlr_pipeops_nn_relu6.Rd | 160 -- man/mlr_pipeops_nn_reshape.Rd | 172 -- man/mlr_pipeops_nn_rnn.Rd |only man/mlr_pipeops_nn_rrelu.Rd | 160 -- man/mlr_pipeops_nn_selu.Rd | 160 -- man/mlr_pipeops_nn_sigmoid.Rd | 160 -- man/mlr_pipeops_nn_silu.Rd |only man/mlr_pipeops_nn_softmax.Rd | 160 -- man/mlr_pipeops_nn_softmax2d.Rd |only man/mlr_pipeops_nn_softmin.Rd |only man/mlr_pipeops_nn_softplus.Rd | 160 -- man/mlr_pipeops_nn_softshrink.Rd | 162 -- man/mlr_pipeops_nn_softsign.Rd | 160 -- man/mlr_pipeops_nn_squeeze.Rd | 165 -- man/mlr_pipeops_nn_tanh.Rd | 160 -- man/mlr_pipeops_nn_tanhshrink.Rd | 160 -- man/mlr_pipeops_nn_threshold.Rd | 162 -- man/mlr_pipeops_nn_tokenizer_categ.Rd | 160 -- man/mlr_pipeops_nn_tokenizer_num.Rd | 160 -- man/mlr_pipeops_nn_transformer_encoder_layer.Rd |only man/mlr_pipeops_nn_unflatten.Rd |only man/mlr_pipeops_nn_unsqueeze.Rd | 162 -- man/mlr_pipeops_preproc_torch.Rd | 177 +- man/mlr_pipeops_torch.Rd | 460 +++---- man/mlr_pipeops_torch_callbacks.Rd | 99 - man/mlr_pipeops_torch_ingress.Rd | 190 --- man/mlr_pipeops_torch_ingress_categ.Rd | 173 -- man/mlr_pipeops_torch_ingress_ltnsr.Rd | 173 -- man/mlr_pipeops_torch_ingress_num.Rd | 171 -- man/mlr_pipeops_torch_loss.Rd | 162 -- man/mlr_pipeops_torch_model.Rd | 268 ++-- man/mlr_pipeops_torch_model_classif.Rd | 162 -- man/mlr_pipeops_torch_model_regr.Rd | 162 -- man/mlr_pipeops_torch_optimizer.Rd | 99 - man/mlr_pipeops_trafo_adjust_brightness.Rd | 5 man/mlr_pipeops_trafo_adjust_gamma.Rd | 7 man/mlr_pipeops_trafo_adjust_hue.Rd | 5 man/mlr_pipeops_trafo_adjust_saturation.Rd | 5 man/mlr_pipeops_trafo_grayscale.Rd | 7 man/mlr_pipeops_trafo_normalize.Rd | 16 man/mlr_pipeops_trafo_pad.Rd | 7 man/mlr_pipeops_trafo_resize.Rd | 7 man/mlr_pipeops_trafo_rgb_to_grayscale.Rd | 7 man/mlr_tasks_cifar.Rd | 6 man/mlr_tasks_melanoma.Rd | 2 man/mlr_tasks_mnist.Rd | 2 man/mlr_tasks_tiny_imagenet.Rd | 2 man/mlr_tasks_torch.Rd |only man/model_descriptor_to_learner.Rd | 14 man/model_descriptor_to_module.Rd | 14 man/model_descriptor_union.Rd | 20 man/msr_torch.Rd |only man/nn.Rd | 10 man/nn_ft_cls.Rd | 2 man/nn_ft_transformer_block.Rd | 22 man/nn_graph.Rd | 21 man/nn_reshape.Rd | 5 man/nn_tokenizer_categ.Rd | 2 man/nn_tokenizer_num.Rd | 2 man/output_dim_for.Rd | 13 man/pipeop_torch.Rd |only man/replace_head.Rd | 9 man/reshape_output_shape.Rd |only man/shape_helpers.Rd |only man/t_clbk.Rd | 24 man/t_loss.Rd | 14 man/t_opt.Rd | 16 man/task_dataset.Rd | 23 man/torch_callback.Rd | 34 tests/testthat/_snaps/LearnerTorch.md | 23 tests/testthat/_snaps/lazy_tensor.md | 14 tests/testthat/helper_autotest.R | 14 tests/testthat/helper_compare.R |only tests/testthat/helper_functions.R | 48 tests/testthat/helper_learner.R | 17 tests/testthat/helper_mlr3pipelines.R | 9 tests/testthat/helper_resume.R |only tests/testthat/helper_shape_inference.R |only tests/testthat/helper_task_torch.R |only tests/testthat/helper_tasks.R | 8 tests/testthat/setup.R | 2 tests/testthat/teardown.R | 2 tests/testthat/test_CallbackSet.R | 121 + tests/testthat/test_CallbackSetCheckpoint.R | 312 ++++- tests/testthat/test_CallbackSetEarlyStopping.R |only tests/testthat/test_CallbackSetHistory.R | 52 tests/testthat/test_CallbackSetLRScheduler.R | 259 ++++ tests/testthat/test_CallbackSetProgress.R | 28 tests/testthat/test_CallbackSetTB.R | 67 + tests/testthat/test_CallbackSetUnfreeze.R | 61 tests/testthat/test_ContextTorch.R |only tests/testthat/test_GraphLearnerTorch.R |only tests/testthat/test_LearnerFTTransformer.R | 112 + tests/testthat/test_LearnerTorch.R | 928 ++++++++++++++- tests/testthat/test_LearnerTorchMLP.R | 6 tests/testthat/test_LearnerTorchModel.R | 108 + tests/testthat/test_LearnerTorchModule.R | 31 tests/testthat/test_LearnerTorchRealMLP.R |only tests/testthat/test_LearnerTorchTabM.R |only tests/testthat/test_LearnerTorchVision.R | 446 ++++--- tests/testthat/test_MeasureTorch.R |only tests/testthat/test_PipeOpTaskPreprocTorch.R | 3 tests/testthat/test_PipeOpTorch.R | 149 ++ tests/testthat/test_PipeOpTorchActivation.R | 62 - tests/testthat/test_PipeOpTorchAdaptiveAvgPool.R | 52 tests/testthat/test_PipeOpTorchAdaptiveMaxPool.R |only tests/testthat/test_PipeOpTorchAvgPool.R | 44 tests/testthat/test_PipeOpTorchBatchNorm.R | 19 tests/testthat/test_PipeOpTorchBlock.R | 43 tests/testthat/test_PipeOpTorchCallbacks.R | 2 tests/testthat/test_PipeOpTorchConv.R | 49 tests/testthat/test_PipeOpTorchConvTranspose.R | 64 - tests/testthat/test_PipeOpTorchDropout.R | 52 tests/testthat/test_PipeOpTorchFTCLS.R | 13 tests/testthat/test_PipeOpTorchFTTransformerBlock.R | 19 tests/testthat/test_PipeOpTorchFn.R | 7 tests/testthat/test_PipeOpTorchGroupNorm.R |only tests/testthat/test_PipeOpTorchHead.R | 19 tests/testthat/test_PipeOpTorchIdentity.R | 5 tests/testthat/test_PipeOpTorchIngress.R | 27 tests/testthat/test_PipeOpTorchLayerNorm.R | 28 tests/testthat/test_PipeOpTorchLinear.R | 16 tests/testthat/test_PipeOpTorchLoss.R | 5 tests/testthat/test_PipeOpTorchMaxPool.R | 63 - tests/testthat/test_PipeOpTorchMerge.R | 51 tests/testthat/test_PipeOpTorchModel.R | 112 + tests/testthat/test_PipeOpTorchMultiheadAttention.R |only tests/testthat/test_PipeOpTorchRecurrent.R |only tests/testthat/test_PipeOpTorchReshape.R | 190 +++ tests/testthat/test_PipeOpTorchSoftmax.R |only tests/testthat/test_PipeOpTorchTokenizer.R | 83 + tests/testthat/test_PipeOpTorchTransformerEncoderLayer.R |only tests/testthat/test_PredictionTorch.R |only tests/testthat/test_TaskTorch.R |only tests/testthat/test_TorchCallback.R | 4 tests/testthat/test_TorchLoss.R | 30 tests/testthat/test_autotests.R | 7 tests/testthat/test_dictionaries.R | 9 tests/testthat/test_helper_compare.R |only tests/testthat/test_lazy_tensor.R | 34 tests/testthat/test_learner_torch_methods.R | 104 + tests/testthat/test_materialize.R | 123 + tests/testthat/test_nn.R | 22 tests/testthat/test_nn_graph.R | 195 +++ tests/testthat/test_paramset_torchlearner.R | 36 tests/testthat/test_pipeop_torch.R |only tests/testthat/test_preprocess.R | 230 +++ tests/testthat/test_shape.R | 141 ++ tests/testthat/test_task_dataset.R | 124 +- tests/testthat/test_utils.R | 70 + tests/testthat/test_with_torch_settings.R | 54 377 files changed, 17663 insertions(+), 13002 deletions(-)
Title: Reliability Analysis Methods for Structural Engineering
Description: Calculate the failure probability of civil engineering problems with Level I up to Level III Methods. References: Spaethe (1991, ISBN:3-211-82348-4) "Die Sicherheit tragender Baukonstruktionen", Au and Beck (2001) "Estimation of small failure probabilities in high dimensions by subset simulation." <doi:10.1016/S0266-8920(01)00019-4>, Breitung (1989) "Asymptotic approximations for probability integrals." <doi:10.1016/0266-8920(89)90024-6>.
Author: Konstantin Nille-Hauf [aut],
Tania Feiri [aut],
Marcus Ricker [aut],
Jan Phillip Schulze-Ardey [ctb],
Til Lux [aut, cre]
Maintainer: Til Lux <til.lux@tu-dortmund.de>
Diff between TesiproV versions 1.0.0 dated 2026-10-28 and 1.0.1 dated 2026-10-30
DESCRIPTION | 8 ++--- MD5 | 10 +++--- NEWS.md | 4 ++ inst/doc/TesiproV-Vignette.html | 4 +- tests/testthat/test_FORM_Rackwitz.R | 32 +++++++++++++++++----- tests/testthat/test_MC_IS_chunk_reproducibility.R | 25 +++++++++-------- 6 files changed, 55 insertions(+), 28 deletions(-)
Title: External Control Borrowing for Rare Disease Trials
Description: Implements causal inference methods for incorporating external
control data into randomized controlled trials (RCTs) with longitudinal
outcomes. Provides an analysis module supporting weighting-based methods
such as inverse probability weighting (IPW) and augmented inverse
probability weighting (AIPW), difference-in-differences (DID), and
synthetic control approaches for borrowing external control information,
as well as a simulation module for generating trial and external control
data, evaluating estimator performance via Monte Carlo studies, and
conducting power analyses for sample size determination. Methods are
based on Zhou et al. (2025) <doi:10.1093/jrsssa/qnae075> and
Zhou et al. (2024) <doi:10.1080/10543406.2024.2330209>.
Author: Lei Shi [aut],
Matt Secrest [cre, aut] ,
Herbert Pang [aut],
Chen Chen [aut],
Jiawen Zhu [aut],
Genentech, Inc. [cph]
Maintainer: Matt Secrest <secrmatt@gmail.com>
Diff between rdborrow versions 0.0.5.0 dated 2026-10-08 and 0.0.5.1 dated 2026-10-30
DESCRIPTION | 12 ++++++------ MD5 | 26 +++++++++++++------------- NAMESPACE | 1 + NEWS.md | 5 +++++ R/package.R | 1 + R/scm.R | 7 ------- inst/WORDLIST | 1 + inst/doc/OLE_analysis_workflow.html | 4 ++-- inst/doc/OLE_simulation_workflow.html | 4 ++-- inst/doc/introduction.html | 4 ++-- inst/doc/primary_analysis_workflow.html | 4 ++-- inst/doc/primary_simulation_workflow.html | 4 ++-- tests/testthat/test-run_analysis.R | 1 - tests/testthat/test-scm.R | 15 ++++----------- 14 files changed, 41 insertions(+), 48 deletions(-)
Title: Estimation and Diagnostic Tools for Instrumental Variables
Designs
Description: Estimation and diagnostic tools for instrumental variables designs
with one endogenous treatment, implementing the guidelines in Lal, Lockhart, Xu,
and Zu (2024) <doi:10.1017/pan.2024.2>. The package reports ordinary least
squares and two-stage least squares estimates with analytic and bootstrapped
confidence intervals, several first-stage F statistics including the effective F
statistic, the Anderson-Rubin test and its confidence set, the tF procedure of
Lee, McCrary, Moreira, and Porter (2022) <doi:10.1257/aer.20211063>, and
local-to-zero sensitivity tests. It also supports fuzzy regression discontinuity
designs.
Author: Apoorva Lal [aut] ,
Yiqing Xu [aut, cre]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between ivDiag versions 1.0.6 dated 2023-09-17 and 1.0.7 dated 2026-10-30
DESCRIPTION | 31 +++-- MD5 | 41 ++++--- NAMESPACE | 6 - R/AR_test.R | 282 ++++++++++++++++++++++++++++++++------------------ R/ivDiag.R | 91 +++++++++++----- R/ltz.R | 7 - R/plot_coef.R | 20 ++- R/rd.R |only R/tF.R | 8 - build |only data/ivDiag.RData |binary man/AR_test.Rd | 23 ++-- man/eff_F.Rd | 10 - man/ivDiag-package.Rd | 4 man/ivDiag.Rd | 31 +++-- man/ltz.Rd | 4 man/mcclendon.Rd |only man/rueda.Rd | 3 man/tF.Rd | 17 +-- tests |only 20 files changed, 371 insertions(+), 207 deletions(-)
Title: Download and Analyze Spatial Development Data from 'INKAR'
Description: A professional R interface to download and analyze spatial
development indicators from the 'BBSR' 'INKAR' (Indicators and Maps for Spatial
and Urban Development) database. Features a bilingual interactive wizard,
fuzzy and normalized indicator search, multi-indicator downloads with automatic
tidy merging (long/wide), guaranteed consistent output schema, robust disk
caching with automatic retry, and 'ggplot2' themes for regional mapping.
Map boundaries come from 'Eurostat' 'GISCO'
<https://ec.europa.eu/eurostat/web/gisco> and match the territorial status
used by 'INKAR'.
Author: Omer Furkan Coban [aut, cre]
Maintainer: Omer Furkan Coban <oemer.furkan.coban@uni-oldenburg.de>
Diff between inkaR versions 0.6.6 dated 2026-06-29 and 0.7.0 dated 2026-10-30
DESCRIPTION | 16 + MD5 | 63 ++++--- NAMESPACE | 1 NEWS.md | 196 +++++++++++++++++++++-- R/api.R | 24 +- R/data.R | 19 +- R/download.R | 283 ++++++++++++++++++++++++--------- R/geometry.R |only R/globals.R | 1 R/metadata.R | 333 ++++++++++++++++++++++++---------------- R/plot.R | 148 ++++++++++------- R/sysdata.rda |only R/utils.R | 68 +++++++- data/indicators.rda |binary inst/WORDLIST | 40 ++++ inst/doc/introduction.Rmd | 55 ++++-- inst/doc/introduction.html | 116 ++++++++----- man/compare_districts.Rd | 6 man/compare_regions.Rd | 5 man/get_inkar_data.Rd | 5 man/get_inkar_geometry.Rd |only man/indicators.Rd | 18 +- man/inkaR-package.Rd | 1 man/inkaR.Rd | 12 + man/inkar_shortcut.Rd | 11 + man/inkar_trends.Rd | 2 man/plot_inkar.Rd | 12 - man/search_indicators.Rd | 3 man/update_indicators.Rd | 16 + tests/testthat/helper-network.R |only tests/testthat/test-analysis.R | 106 ++++++++++++ tests/testthat/test-api.R | 36 +++- tests/testthat/test-download.R | 309 +++++++++++++++++++++++++++++++++++-- tests/testthat/test-geometry.R |only vignettes/introduction.Rmd | 55 ++++-- 35 files changed, 1484 insertions(+), 476 deletions(-)
Title: Superefficient Estimation of Future Conditional Hazards Based on
Marker Information
Description: Provides univariate and indexed (multivariate) nonparametric smoothed kernel estimators for the future conditional hazard rate function when time-dependent covariates are present, a bandwidth selector for the estimator's implementation and pointwise and uniform confidence bands. Methods used in the package refer to Bagkavos, Isakson, Mammen, Nielsen and Proust-Lima (2025) <doi:10.1093/biomet/asaf008>.
Author: Dimitrios Bagkavos [aut, cre],
Alex Isakson [ctb],
Enno Mammen [ctb],
Jens Nielsen [ctb],
Cecile Proust-Lima [ctb]
Maintainer: Dimitrios Bagkavos <dimitrios.bagkavos@gmail.com>
Diff between HQM versions 2.1 dated 2026-03-26 and 2.2 dated 2026-10-30
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HQM-2.1/HQM/R/h_xtll.R |only HQM-2.1/HQM/R/index_optim.R |only HQM-2.1/HQM/R/lin_interpolate.R |only HQM-2.1/HQM/R/llK_b.R |only HQM-2.1/HQM/R/llweights.R |only HQM-2.1/HQM/R/make_sf.R |only HQM-2.1/HQM/R/prep_boot.R |only HQM-2.1/HQM/R/prep_cv.R |only HQM-2.1/HQM/R/prep_cv2.R |only HQM-2.1/HQM/R/timeRoc.R |only HQM-2.1/HQM/R/to_id.R |only HQM-2.1/HQM/man/Boot.HRandIndex.param.Rd |only HQM-2.1/HQM/man/Boot.hqm.Rd |only HQM-2.1/HQM/man/BwB.HRandIndex.param.Rd |only HQM-2.1/HQM/man/Compute.iid.KM.Rd |only HQM-2.1/HQM/man/Conf_bands.Rd |only HQM-2.1/HQM/man/Epan.Rd |only HQM-2.1/HQM/man/Exposure_Occurence.Rd |only HQM-2.1/HQM/man/Kernels.Rd |only HQM-2.1/HQM/man/Pivot.Index.CIs.Rd |only HQM-2.1/HQM/man/Quantile.Index.CIs.Rd |only HQM-2.1/HQM/man/R_K.Rd |only HQM-2.1/HQM/man/Sim.True.Hazard.Rd |only HQM-2.1/HQM/man/SingleIndCondFutHaz.Rd |only HQM-2.1/HQM/man/StudentizedBwB.Index.CIs.Rd |only HQM-2.1/HQM/man/auc.hqm.Rd |only HQM-2.1/HQM/man/b_selection.Rd |only HQM-2.1/HQM/man/b_selection_index_optim.Rd |only HQM-2.1/HQM/man/b_selection_prep_g.Rd |only HQM-2.1/HQM/man/bs.hqm.Rd |only HQM-2.1/HQM/man/compute_iid_decomposition.Rd |only HQM-2.1/HQM/man/dataset_split.Rd |only HQM-2.1/HQM/man/dij.Rd |only HQM-2.1/HQM/man/g_xt.Rd |only HQM-2.1/HQM/man/get_alpha.Rd |only HQM-2.1/HQM/man/get_h_x.Rd |only HQM-2.1/HQM/man/get_h_xll.Rd |only HQM-2.1/HQM/man/h_xt.Rd |only HQM-2.1/HQM/man/h_xt_vec.Rd |only HQM-2.1/HQM/man/h_xtll.Rd |only HQM-2.1/HQM/man/index_optim.Rd |only HQM-2.1/HQM/man/lin_interpolate.Rd |only HQM-2.1/HQM/man/llK_b.Rd |only HQM-2.1/HQM/man/llweights.Rd |only HQM-2.1/HQM/man/make_sf.Rd |only HQM-2.1/HQM/man/prep_boot.Rd |only HQM-2.1/HQM/man/prep_cv.Rd |only HQM-2.1/HQM/man/prep_cv2.Rd |only HQM-2.1/HQM/man/timeRoc.Rd |only HQM-2.1/HQM/man/to_id.Rd |only HQM-2.2/HQM/DESCRIPTION | 6 HQM-2.2/HQM/MD5 | 164 ++++++++++++------------- HQM-2.2/HQM/R/AUC.hat.HQM.R |only HQM-2.2/HQM/R/AUC.hat.R |only HQM-2.2/HQM/R/BS.hat.HQM.R |only HQM-2.2/HQM/R/CV.b.R |only HQM-2.2/HQM/R/CV.theta.R |only HQM-2.2/HQM/R/K.Epanechnikov.R |only HQM-2.2/HQM/R/K.b.R |only HQM-2.2/HQM/R/K.b.u.v.R |only HQM-2.2/HQM/R/Q.theta.R |only HQM-2.2/HQM/R/Q1.R | 6 HQM-2.2/HQM/R/R.hat.K.R |only HQM-2.2/HQM/R/X.i.s.interpolate.R |only HQM-2.2/HQM/R/bootstrap.CI.pivotal.R |only HQM-2.2/HQM/R/bootstrap.CI.quantile.R |only HQM-2.2/HQM/R/bootstrap.CI.studentized.R |only HQM-2.2/HQM/R/bootstrap.h.hat.star.R |only HQM-2.2/HQM/R/c2.u.integrand.R |only HQM-2.2/HQM/R/ck.u.R |only HQM-2.2/HQM/R/confidence.bands.R |only HQM-2.2/HQM/R/data.minus.I.j.R |only HQM-2.2/HQM/R/double.bootstrap.h.hat.star.R |only HQM-2.2/HQM/R/g.hat.i.R |only HQM-2.2/HQM/R/g.hat.t.x.R |only HQM-2.2/HQM/R/get.alpha.hat.R |only HQM-2.2/HQM/R/get.h.hat.x.R |only HQM-2.2/HQM/R/get.h.hat.x.theta.R |only HQM-2.2/HQM/R/get.h.tilde.x.R |only HQM-2.2/HQM/R/h.hat.minus.I.j.R |only HQM-2.2/HQM/R/h.hat.minus.I.j.theta.R |only HQM-2.2/HQM/R/h.hat.star.x.theta.R |only HQM-2.2/HQM/R/h.hat.x.t.R |only HQM-2.2/HQM/R/h.hat.x.t.vec.R |only HQM-2.2/HQM/R/h.tilde.x.t.R |only HQM-2.2/HQM/R/h.true.simulated.R |only HQM-2.2/HQM/R/iid.AUC.hat.R |only HQM-2.2/HQM/R/iid.G.hat.R |only HQM-2.2/HQM/R/make.S.hat.R |only HQM-2.2/HQM/R/make.dN.Z.ds.R |only HQM-2.2/HQM/R/to.id.R |only HQM-2.2/HQM/R/wild.bootstrap.summands.R |only HQM-2.2/HQM/build/partial.rdb |binary HQM-2.2/HQM/man/AUC.hat.HQM.Rd |only HQM-2.2/HQM/man/AUC.hat.Rd |only HQM-2.2/HQM/man/BS.hat.HQM.Rd |only HQM-2.2/HQM/man/CV.b.Rd |only HQM-2.2/HQM/man/CV.theta.Rd |only HQM-2.2/HQM/man/K.Epanechnikov.Rd |only HQM-2.2/HQM/man/K.b.Rd |only HQM-2.2/HQM/man/K.b.u.v.Rd |only HQM-2.2/HQM/man/Q.theta.Rd |only HQM-2.2/HQM/man/Q1.Rd | 62 ++++----- HQM-2.2/HQM/man/R.hat.K.Rd |only HQM-2.2/HQM/man/X.i.s.interpolate.Rd |only HQM-2.2/HQM/man/bootstrap.CI.pivotal.Rd |only HQM-2.2/HQM/man/bootstrap.CI.quantile.Rd |only HQM-2.2/HQM/man/bootstrap.CI.studentized.Rd |only HQM-2.2/HQM/man/bootstrap.h.hat.star.Rd |only HQM-2.2/HQM/man/c2.u.integrand.Rd |only HQM-2.2/HQM/man/ck.u.Rd |only HQM-2.2/HQM/man/confidence.bands.Rd |only HQM-2.2/HQM/man/data.minus.I.j.Rd |only HQM-2.2/HQM/man/double.bootstrap.h.hat.star.Rd |only HQM-2.2/HQM/man/g.hat.i.Rd |only HQM-2.2/HQM/man/g.hat.t.x.Rd |only HQM-2.2/HQM/man/get.alpha.hat.Rd |only HQM-2.2/HQM/man/get.h.hat.x.Rd |only HQM-2.2/HQM/man/get.h.hat.x.theta.Rd |only HQM-2.2/HQM/man/get.h.tilde.x.Rd |only HQM-2.2/HQM/man/h.hat.minus.I.j.Rd |only HQM-2.2/HQM/man/h.hat.minus.I.j.theta.Rd |only HQM-2.2/HQM/man/h.hat.star.x.theta.Rd |only HQM-2.2/HQM/man/h.hat.x.t.Rd |only HQM-2.2/HQM/man/h.hat.x.t.vec.Rd |only HQM-2.2/HQM/man/h.tilde.x.t.Rd |only HQM-2.2/HQM/man/h.true.simulated.Rd |only HQM-2.2/HQM/man/iid.AUC.hat.Rd |only HQM-2.2/HQM/man/iid.G.hat.Rd |only HQM-2.2/HQM/man/make.S.hat.Rd |only HQM-2.2/HQM/man/make.dN.Z.ds.Rd |only HQM-2.2/HQM/man/to.id.Rd |only HQM-2.2/HQM/man/wild.bootstrap.summands.Rd |only 161 files changed, 119 insertions(+), 119 deletions(-)
Title: Animated Glass-Style Tabs and Select Inputs for 'Shiny'
Description: Tools for creating animated glassmorphism-style tab
navigation and select filter widgets in 'Shiny' applications.
Provides a tab navigation component with a sliding glass halo
animation, a searchable multi-select dropdown, and a single-select
dropdown - all with multiple colour themes and server-side update
helpers. Tabs support icons, numeric badges, disable/enable toggling,
runtime append/remove, reactive rendering via 'renderGlassTabs()', URL
bookmarking, responsive overflow modes, optional touch gestures,
reduced-motion support, and compact mode for dashboard card layouts.
'glassTabCondition()' generates 'conditionalPanel()' condition strings
without needing to recall the internal input key pattern.
'glasstabs_news()' displays the release notes from the R console.
Built-in example apps can be launched with 'runGlassExample()'. All
widgets are compatible with standard 'Shiny' layouts and 'bs4Dash'
dashboards and 'bslib' themed applications. An experimental
'glassPage()' helper prov [...truncated...]
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between glasstabs versions 0.4.0 dated 2026-09-11 and 0.4.1 dated 2026-10-30
DESCRIPTION | 12 MD5 | 192 NEWS.md | 266 R/dependencies.R | 6 R/glassSelect.R | 1185 ++-- R/glass_multiselect.R | 2402 ++++---- R/glass_page.R | 228 R/glass_tab_theme.R | 304 - R/glass_tabs.R | 315 - R/tab-utils.R | 149 R/utils-check.R | 28 R/utils.R | 410 - README.md | 129 build/vignette.rds |binary inst/WORDLIST | 188 inst/cheatsheet/glasstabs-cheatsheet.pdf |binary inst/cheatsheet/glasstabs-cheatsheet.tex | 1216 ++-- inst/doc/cheatsheet.R | 50 inst/doc/cheatsheet.Rmd | 68 inst/doc/cheatsheet.html | 351 - inst/doc/examples-gallery.R |only inst/doc/examples-gallery.Rmd |only inst/doc/examples-gallery.html |only inst/doc/getting-started.R | 7 inst/doc/getting-started.Rmd | 45 inst/doc/getting-started.html | 72 inst/doc/glassSelect.R | 42 inst/doc/glassSelect.Rmd | 134 inst/doc/glassSelect.html | 444 - inst/doc/indicators.Rmd | 6 inst/doc/indicators.html | 2 inst/doc/linked-filters.R |only inst/doc/linked-filters.Rmd |only inst/doc/linked-filters.html |only inst/doc/migrating.R |only inst/doc/migrating.Rmd |only inst/doc/migrating.html |only inst/doc/modules.R |only inst/doc/modules.Rmd |only inst/doc/modules.html |only inst/doc/multiselect.R | 324 - inst/doc/multiselect.Rmd | 835 ++ inst/doc/multiselect.html | 1178 ++-- inst/doc/posit-connect.Rmd | 266 inst/doc/posit-connect.html | 37 inst/doc/responsive-accessibility.R | 8 inst/doc/responsive-accessibility.Rmd | 350 - inst/doc/responsive-accessibility.html | 197 inst/doc/tabs.Rmd | 655 +- inst/doc/tabs.html | 10 inst/doc/troubleshooting.R |only inst/doc/troubleshooting.Rmd |only inst/doc/troubleshooting.html |only inst/examples/basic/app.R | 42 inst/examples/bs4dash/app.R | 4 inst/examples/bslib/app.R | 2 inst/examples/connect-workflow/app.R | 558 - inst/examples/dashboard/app.R | 72 inst/examples/indicators/app.R | 2 inst/examples/light-mode |only inst/examples/native-comparison |only inst/examples/server-select/app.R | 48 inst/examples/smoke-test/app.R | 38 inst/examples/square-corners/app.R | 2 inst/examples/stress-test |only inst/examples/theme-switcher |only inst/www/glass.css | 2749 +++++---- inst/www/glass.js | 6870 +++++++++++++----------- man/glassMultiSelect.Rd | 79 man/glassMultiSelectServer.Rd | 14 man/glassMultiSelectValue.Rd | 20 man/glassSelect.Rd | 63 man/glassSelectServer.Rd | 9 man/glassTabsUI.Rd | 18 man/glass_tab_theme.Rd | 11 man/runGlassExample.Rd | 6 man/updateGlassMultiSelect.Rd | 32 man/updateGlassSelect.Rd | 10 man/updateGlassTabBadge.Rd | 3 tests/testthat/_snaps/golden-output.md | 635 +- tests/testthat/apps/browser-interactions/app.R | 629 +- tests/testthat/setup-chrome-ci.R |only tests/testthat/test-accessibility-and-close.R | 495 + tests/testthat/test-browser-interactions.R | 3311 +++++++++-- tests/testthat/test-documentation-examples.R |only tests/testthat/test-documentation-parity.R |only tests/testthat/test-download-tracker.R |only tests/testthat/test-errors-and-internals.R | 84 tests/testthat/test-glassselect.R | 993 ++- tests/testthat/test-golden-output.R | 14 tests/testthat/test-multiselect.R | 1273 ++-- tests/testthat/test-selection-correctness.R |only tests/testthat/test-server-select.R | 127 tests/testthat/test-square-corners.R | 12 tests/testthat/test-tab-conditions-and-errors.R | 8 tests/testthat/test-tab-features.R | 43 tests/testthat/test-tabs.R | 315 - tests/testthat/test-themes.R | 212 vignettes/cheatsheet.Rmd | 68 vignettes/examples-gallery.Rmd |only vignettes/getting-started.Rmd | 45 vignettes/glassSelect.Rmd | 134 vignettes/indicators.Rmd | 6 vignettes/linked-filters.Rmd |only vignettes/migrating.Rmd |only vignettes/modules.Rmd |only vignettes/multiselect.Rmd | 835 ++ vignettes/posit-connect.Rmd | 266 vignettes/responsive-accessibility.Rmd | 350 - vignettes/tabs.Rmd | 655 +- vignettes/troubleshooting.Rmd |only 111 files changed, 21013 insertions(+), 12260 deletions(-)
Title: Interactive Graph Layout Editor for Mixed Graphs
Description: Provides an interactive interface to plot and layout mixed
graphs based on the adjacency matrix defined in Sadeghi and
Marchetti (2012) <doi:10.32614/RJ-2012-015>. Uses 'shiny' and
'visNetwork' to allow dynamic node repositioning and coordinate
extraction.
Author: Giovanni M. Marchetti [aut, cre] ,
Kayvan Sadeghi [aut]
Maintainer: Giovanni M. Marchetti <giovanni.marchetti@unifi.it>
Diff between ggmGraphEditor versions 0.1.0 dated 2026-10-20 and 0.2.0 dated 2026-10-30
DESCRIPTION | 8 - MD5 | 9 +- NEWS.md |only R/all_functions.R | 170 ++++++++++++++++++++++++++++++-------- man/graphLayout.Rd | 36 +++++++- tests/testthat/test-graphLayout.R | 67 ++++++++++++++ 6 files changed, 246 insertions(+), 44 deletions(-)
More information about ggmGraphEditor at CRAN
Permanent link
Title: Tabular Data Suppression using Gaussian Elimination
Description: A statistical disclosure control tool to protect tables by suppression
using the Gaussian elimination secondary suppression algorithm
(Langsrud, 2024) <doi:10.1007/978-3-031-69651-0_6>. A suggestion is
to start by working with functions SuppressSmallCounts() and
SuppressDominantCells(). These functions use primary suppression functions for
the minimum frequency rule and the dominance rule, respectively. Novel
functionality for targeted attribute disclosure protection is also included.
See Langsrud (2026) <doi:10.1007/978-3-032-37883-5_8> and references therein.
General
primary suppression functions can be supplied as input to the general working
horse function, GaussSuppressionFromData(). Suppressed frequencies can be
replaced by synthetic decimal numbers as described in
Langsrud (2019) <doi:10.1007/s11222-018-9848-9>.
This approach can also be used as a flexible tool for suppression of post-published
tabular data (Langsrud and Bøvelstad, 2022) <doi:10.1007/978-3-0 [...truncated...]
Author: Oeyvind Langsrud [aut, cre] ,
Daniel Lupp [aut] ,
Hege Boevelstad [ctb] ,
Vidar Norstein Klungre [rev] ,
Jonas Lindblad [ctb],
Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between GaussSuppression versions 1.3.0 dated 2026-02-26 and 1.3.2 dated 2026-10-30
DESCRIPTION | 18 MD5 | 35 NAMESPACE | 124 - NEWS.md | 14 R/GaussSuppressDec.R | 89 R/SuppressKDisclosure.R | 15 R/SuppressionFromDecimals.R | 7 build/partial.rdb |only build/vignette.rds |binary inst/doc/Linked_table_suppression.html | 968 +++++----- inst/doc/Magnitude_table_suppression.html | 1349 +++++++-------- inst/doc/Small_count_frequency_table_suppression.html | 900 +++++----- inst/doc/define_tables.html | 1612 +++++++++--------- man/GaussSuppressDec.Rd | 23 man/GaussSuppressionFromData.Rd | 2 man/GetDefault.Rd | 2 man/SuppressKDisclosure.Rd | 15 man/SuppressionFromDecimals.Rd | 6 man/reexports.Rd | 2 19 files changed, 2671 insertions(+), 2510 deletions(-)
More information about GaussSuppression at CRAN
Permanent link
Title: Difference-in-Differences with a Continuous Treatment
Description: Provides methods for difference-in-differences with a continuous treatment and staggered treatment adoption. Includes estimation of treatment effects and causal responses as a function of the dose, event studies indexed by length of exposure to the treatment, and aggregation into overall average effects. Uniform inference procedures are included, along with both parametric and nonparametric models for treatment effects. The methods are based on Callaway, Goodman-Bacon, and Sant'Anna (2025) <doi:10.48550/arXiv.2107.02637>.
Author: Brantly Callaway [aut, cre],
Andrew Goodman-Bacon [aut],
Pedro H. C. Sant'Anna [aut]
Maintainer: Brantly Callaway <brantly.callaway@uga.edu>
Diff between contdid versions 0.1.1 dated 2026-07-21 and 0.1.2 dated 2026-10-30
DESCRIPTION | 8 ++-- MD5 | 16 ++++----- NEWS.md | 37 ++++++++++++++-------- R/cont_did.R | 31 +++++++++++++++++- README.md | 12 +++---- inst/CITATION | 4 +- man/cont_did.Rd | 4 +- man/figures/README-unnamed-chunk-6-1.png |binary tests/testthat/test-cont_did.R | 52 +++++++++++++++++++++++++++++-- 9 files changed, 128 insertions(+), 36 deletions(-)
Title: Multilevel Modeling of Dendroclimatical Fluctuations
Description: Processes multilevel ecological data series (MEDS)
arranged in temporal or spatial hierarchies defined by sampling
designs. The package recursively applies one-level stage functions to
long-format tree-ring and climate data, then optionally fits a
terminal model to the processed series. Terminal fits currently
include mixed-effects detrending through 'nlme' and Friedman
supersmoother detrending through supsmu() of 'stats'. The package also
supports post-detrending comparison and inference tools for
multilevel dendroclimatic analyses. The method is described in
Lara et al. (2018) <doi:10.1371/journal.pone.0196923>.
Author: Wilson Lara-Henao [aut, cre] ,
Felipe Bravo [aut]
Maintainer: Wilson Lara-Henao <wilarhen@gmail.com>
Diff between BIOdry versions 0.9.5 dated 2026-10-29 and 0.9.6 dated 2026-10-30
BIOdry-0.9.5/BIOdry/tests/testthat/test-frametoLme-refit-nesting.R |only BIOdry-0.9.6/BIOdry/DESCRIPTION | 8 - BIOdry-0.9.6/BIOdry/MD5 | 69 +++++----- BIOdry-0.9.6/BIOdry/NEWS.md | 21 +++ BIOdry-0.9.6/BIOdry/R/frametoLme_patched_inlinedocs_v3.R | 6 BIOdry-0.9.6/BIOdry/R/modelFrame_formNULL_trellis_inlinedocs.R | 7 - BIOdry-0.9.6/BIOdry/R/modelFrame_methods_trellis_inlinedocs.R | 16 +- BIOdry-0.9.6/BIOdry/R/muleMan.R | 20 +- BIOdry-0.9.6/BIOdry/R/plot.modelFrame_trellis_inlinedocs.R | 10 - BIOdry-0.9.6/BIOdry/R/plot.muleMan.R | 20 +- BIOdry-0.9.6/BIOdry/build/partial.rdb |binary BIOdry-0.9.6/BIOdry/man/anova.modelFrame.Rd | 9 - BIOdry-0.9.6/BIOdry/man/frametoLme.Rd | 6 BIOdry-0.9.6/BIOdry/man/modelFrame.Rd | 7 - BIOdry-0.9.6/BIOdry/man/muleMan.Rd | 20 +- BIOdry-0.9.6/BIOdry/man/plot.modelFrame.Rd | 10 - BIOdry-0.9.6/BIOdry/man/plot.muleMan.Rd | 20 +- BIOdry-0.9.6/BIOdry/man/print.summary.modelFrame.Rd | 3 BIOdry-0.9.6/BIOdry/man/summary.modelFrame.Rd | 4 BIOdry-0.9.6/BIOdry/tests/testthat/helper-fits.R |only BIOdry-0.9.6/BIOdry/tests/testthat/test-default-route-3-levels.R |only BIOdry-0.9.6/BIOdry/tests/testthat/test-fluc-year-group.R | 5 BIOdry-0.9.6/BIOdry/tests/testthat/test-frametoLme-copy-time.R | 11 + BIOdry-0.9.6/BIOdry/tests/testthat/test-frametoLme-residual-alignment.R | 69 +++++----- BIOdry-0.9.6/BIOdry/tests/testthat/test-frametoLme-single-level.R | 6 BIOdry-0.9.6/BIOdry/tests/testthat/test-frametoLme-time-variable.R | 26 ++- BIOdry-0.9.6/BIOdry/tests/testthat/test-lmeForm-climate-year.R | 59 ++++---- BIOdry-0.9.6/BIOdry/tests/testthat/test-muleMan-labels.R | 44 ++---- BIOdry-0.9.6/BIOdry/tests/testthat/test-normalizeGroupLevels-fitted.R | 16 -- BIOdry-0.9.6/BIOdry/tests/testthat/test-plot-aspect-labels.R | 11 + BIOdry-0.9.6/BIOdry/tests/testthat/test-plot-frametoLme-nofluc.R | 9 - BIOdry-0.9.6/BIOdry/tests/testthat/test-plot-muleMan-panels.R | 26 +-- BIOdry-0.9.6/BIOdry/tests/testthat/test-shiftFrame-labels.R | 17 +- BIOdry-0.9.6/BIOdry/tests/testthat/test-summary-frametoLme-fixed.R | 6 BIOdry-0.9.6/BIOdry/tests/testthat/test-summary-frametoLme-groups.R | 22 +-- BIOdry-0.9.6/BIOdry/tests/testthat/test-tdForm-default-time.R | 45 ++---- BIOdry-0.9.6/BIOdry/tests/testthat/test-type-roles.R | 26 ++- 37 files changed, 352 insertions(+), 302 deletions(-)
Title: Access the 'TransfereGov' Open Data APIs
Description: Provides a modern interface to the open data application
programming interfaces of the Brazilian federal government's
'TransfereGov' platform
(<https://www.gov.br/transferegov/pt-br/ferramentas-gestao/dados-abertos>).
Covers the discretionary and legal transfers, special transfers,
fund-to-fund transfers, partnership management, and decentralized credit
('TED') modules, which together publish eighty-six tables on action plans,
programs, proposals, partnerships, budget commitments, credit notes,
financial execution, management reports, and payment orders. Filters are
the
services' own typed query parameters, validated against the published
schema before a request is made, and results are returned as tidy tibbles
with types taken from that schema. Automatic pagination, request
throttling, retries with exponential backoff, and an optional response
cache are included.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Julia Nascimento Barreto [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between transferegovr versions 0.2.0 dated 2026-09-28 and 0.3.0 dated 2026-10-30
DESCRIPTION | 34 ++-- MD5 | 62 ++++----- NAMESPACE | 1 NEWS.md | 32 ++++ R/client.R | 2 R/get.R | 20 ++ R/metadata.R | 4 R/sysdata.rda |binary README.md | 32 ++-- inst/CITATION | 2 inst/doc/joining-tables.R | 33 ++++ inst/doc/joining-tables.Rmd | 176 ++++++++++++++++++++++++- inst/doc/joining-tables.html | 274 ++++++++++++++++++++++++++++++---------- inst/doc/pagination.R | 20 +- inst/doc/pagination.Rmd | 41 +++-- inst/doc/pagination.html | 54 ++++--- inst/doc/transferegovr.R | 15 +- inst/doc/transferegovr.Rmd | 36 +++-- inst/doc/transferegovr.html | 54 ++++--- man/figures/architecture.svg | 75 ++++++---- man/module_shortcuts.Rd | 4 man/tg_count.Rd | 8 - man/tg_get.Rd | 9 - man/tg_tables.Rd | 2 man/tg_updated_at.Rd | 4 man/transferegovr-package.Rd | 10 - tests/testthat/_snaps/params.md | 2 tests/testthat/test-live.R | 72 ++++++++-- tests/testthat/test-metadata.R | 37 +++-- vignettes/joining-tables.Rmd | 176 ++++++++++++++++++++++++- vignettes/pagination.Rmd | 41 +++-- vignettes/transferegovr.Rmd | 36 +++-- 32 files changed, 1006 insertions(+), 362 deletions(-)
Title: Hydrologic Geospatial Fabric Extraction Tool Chain
Description: Traverses and works with National Hydrography Dataset Plus (NHDPlus) data. All methods implemented in 'hydrogeofetch' are available in the NHDPlus documentation available from the US Environmental Protection Agency <https://www.epa.gov/waterdata/basic-information>. Previously published as 'nhdplusTools'.
Author: David Blodgett [aut, cre] ,
Mike Johnson [ctb] ,
Marc Weber [ctb] ,
Josh Erickson [ctb],
Lauren Koenig [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between hydrogeofetch versions 2.0.4 dated 2026-09-09 and 2.0.5 dated 2026-10-30
DESCRIPTION | 14 - MD5 | 59 ++-- NAMESPACE | 191 ++++++++------- NEWS.md | 29 ++ R/downloading_tools.R | 68 +++++ R/get_drainage_area_estimates.R | 9 R/get_oaproc.R | 12 R/get_vaa.R | 34 ++ R/mainstems.R | 281 ++++++++++++++++++++++- R/oafeat_tools.R | 17 + R/translate.R |only inst/doc/hydrogeofetch.R | 20 + inst/doc/hydrogeofetch.Rmd | 32 ++ inst/doc/hydrogeofetch.html | 51 ++++ inst/extdata/3dhp_yahara_flowlines.R | 4 inst/extdata/new_hope_3dhp.R |only inst/extdata/new_hope_data.R | 22 - inst/extdata/nhdplushr_data.R | 12 inst/extdata/sample_data.R | 4 inst/extdata/sample_flines.R | 4 inst/extdata/utils.R | 16 + inst/extdata/walker_data.R | 14 - man/get_mainstem_flowlines.Rd |only man/translate_flowlines.Rd |only man/translate_hydrolocations.Rd |only tests/testthat/data/mainstems_enhd.csv |only tests/testthat/data/mainstems_nhdphr_lookup.csv |only tests/testthat/data/mainstems_nhdpv2_lookup.csv |only tests/testthat/data/new_hope_3dhp_window.geojson |only tests/testthat/fixtures.tar.gz |binary tests/testthat/helper.R | 3 tests/testthat/test_downloading_tools.R |only tests/testthat/test_get_vaa.R | 19 + tests/testthat/test_mainstems.R | 145 +++++++++++ tests/testthat/test_translate.R |only vignettes/hydrogeofetch.Rmd | 32 ++ 36 files changed, 929 insertions(+), 163 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) (fast) simulation of random fields, b) inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Flexible covariance models for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. Se [...truncated...]
Author: Moreno Bevilacqua [aut, cre, cph],
Victor Morales-Onate [ctb],
Francisco Cuevas-Pacheco [ctb],
Christian Caamano-Carrillo [ctb]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 2.2.9 dated 2026-09-23 and 2.3.0 dated 2026-10-30
DESCRIPTION | 12 MD5 | 157 +++++++----- R/FixedMarginST.R |only R/GeoCompositeLik2.R | 39 +-- R/GeoCorrFct.r | 18 - R/GeoCorrFct_Cop.R | 5 R/GeoCovariogram.r | 19 - R/GeoCovmatrix.r | 44 ++- R/GeoDoScores.R | 110 ++------ R/GeoFit.R | 21 + R/GeoIndCompositeLik2.R | 18 - R/GeoKrig.r | 24 + R/GeoKrigWeights.R | 16 - R/GeoKrigloc.R | 31 ++ R/GeoKriglocWeights.R | 245 +------------------ R/GeoLik.r | 126 ++++++---- R/GeoNA.R | 13 - R/GeoNeighIndex.R | 91 ++++--- R/GeoNeighborhood.R | 17 - R/GeoPit.R | 2 R/GeoQQ.R | 6 R/GeoSim.r | 143 +++++------ R/GeoSimCopula.R | 4 R/GeoSimapprox.r | 20 + R/GeoSimcond.R | 42 ++- R/GeoTest.r | 8 R/GeoVariogramDir.R | 418 ++++++++++++--------------------- R/GeoWls.r | 21 + R/KrigUtils.R | 72 +++++ R/MarginalUtils.R | 137 ++++++++++- R/ParallelUtils.R | 4 R/ParameterValidation.R | 4 R/SimCE.R | 95 ++++--- R/SimcondUtils.R | 267 ++++++++++++++++++++- R/SimulationUtils.R | 87 ++++++ R/SkewLaplaceUtils.R |only R/TB.R | 5 R/Utility.r | 75 +++--- R/Utility_cov.R | 116 ++++++--- inst/PATCH_NOTES_20260927.md |only inst/SkewLaplace-numerics.md |only inst/doc |only inst/examples |only inst/validation |only man/GeoCorrFct.Rd | 13 + man/GeoCorrFct_Cop.Rd | 11 man/GeoCovariogram.Rd | 24 - man/GeoCovmatrix.Rd | 44 ++- man/GeoFit.Rd | 34 +- man/GeoFit2.Rd | 8 man/GeoFixedMarginST.Rd |only man/GeoKrigloc.Rd | 16 - man/GeoNA.Rd | 16 - man/GeoNeighbSelect.Rd | 2 man/GeoQQ.Rd | 4 man/GeoResiduals.Rd | 4 man/GeoScatterplot.Rd | 16 - man/GeoScores.Rd | 2 man/GeoSim.Rd | 28 +- man/GeoSimCopula.Rd | 2 man/GeoSimapprox.Rd | 24 - man/GeoSimcond.Rd | 71 ++++- man/GeoVarest.Rd | 2 man/GeoVarestbootstrap.Rd | 2 man/GeoVariogram.Rd | 16 - man/GeovariogramDir.Rd | 19 + src/CompositeLikelihood2.c | 460 +++++++++++++++---------------------- src/CompositeLikelihood2_ani.c | 81 +++--- src/CompositeLikelihoodCond2.c | 417 +++++++++++++-------------------- src/CompositeLikelihoodCond2_ani.c | 73 +++-- src/CorrelationFunction.c | 133 ++++++---- src/Distributions.c | 432 ++++++++-------------------------- src/GeoModels_init.c | 20 + src/OpenMP.c | 9 src/SparseTaperSetup.c |only src/Utility.c | 106 +++----- src/covariance_series.c | 43 +++ src/fixed_margin_st.c |only src/fixed_margin_st.h |only src/header.h | 17 + src/skewlaplace_conditional.c |only src/skewlaplace_density.c |only src/student_corr.c |only 83 files changed, 2487 insertions(+), 2194 deletions(-)
Title: Generalized Autoregressive Score Models
Description: Simulation, estimation and forecasting of univariate and
multivariate generalized autoregressive score models. Time-varying
distributional parameters are updated using the score of the conditional
distribution, with alternative score scaling specifications. Provides
maximum likelihood estimation, filtering, density forecasting and
rolling forecast evaluation for a range of conditional distributions.
Includes diagnostic tools and methods for evaluating Value-at-Risk and
Expected Shortfall forecasts. The models and their applications are
described in Ardia et al. (2019) <doi:10.18637/jss.v088.i06>.
Author: Leopoldo Catania [aut, cre] ,
David Ardia [ctb] ,
Kris Boudt [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@econ.au.dk>
This is a re-admission after prior archival of version 0.3.4.1 dated 2024-08-19
Diff between GAS versions 0.3.4.1 dated 2024-08-19 and 0.4.3 dated 2026-10-30
DESCRIPTION | 26 + MD5 | 201 +++++++------- NAMESPACE | 5 R/BackTest.R | 4 R/ClassMethods.R | 91 +++--- R/ConfidenceBands.R | 66 ++++ R/Distributions.R | 13 R/Estimate.R | 93 +++--- R/EstimationChecks.R |only R/Figures.R | 148 +++------- R/Forecast.R | 67 +++- R/GASspec.R | 10 R/Inference.R | 94 +++--- R/Likelihood.R | 30 ++ R/OptimiserWrapper.R | 112 ++++++- R/RcppExports.R | 322 +++++++++++----------- R/Simulate.R | 1 R/StartingValues.R | 70 +++- R/Testing.R | 124 +++----- R/Utils.R | 4 build/partial.rdb |binary inst/ExtensionTests/run_TestThat.R | 2 inst/Optional-Hessian.md |only man/BacktestDensity.Rd | 33 +- man/BacktestVaR.Rd | 7 man/Bounds.Rd | 59 ++-- man/ConfidenceBands.Rd | 107 ++++++- man/DistInfo.Rd | 28 + man/Distributions.Rd | 50 +++ man/FZLoss.Rd | 151 +++++----- man/GAS-package.Rd | 7 man/Goals.Rd | 4 man/MultiGASFit.Rd | 299 ++++++++++++-------- man/MultiGASFor.Rd | 2 man/MultiGASRoll.Rd | 19 + man/MultiGASSim.Rd | 228 ++++++++------- man/MultiGASSpec.Rd | 5 man/MultiMapParameters.Rd | 92 +++--- man/MultiUnmapParameters.Rd | 36 ++ man/PIT_test.Rd | 38 ++ man/UniGASFit.Rd | 430 +++++++++++++++--------------- man/UniGASFor.Rd | 13 man/UniGASRoll.Rd | 19 + man/UniGASSim.Rd | 222 +++++++-------- man/UniGASSpec.Rd | 10 man/UniMapParameters.Rd | 21 + man/UniUnmapParameters.Rd | 15 + man/cpichg.Rd | 12 man/fn.optim.Rd | 39 +- man/fn.solnp.Rd | 16 - man/mGASFit-class.Rd | 7 man/mGASFor-class.Rd | 1 man/mGASRoll-class.Rd | 1 man/mGASSim-class.Rd | 1 man/method-plot.Rd | 30 +- man/sp500ret.Rd | 2 man/sp500rv.Rd | 22 - man/uGASFit-class.Rd | 13 man/uGASFor-class.Rd | 13 man/uGASRoll-class.Rd | 7 man/uGASSim-class.Rd | 1 man/usunp.Rd | 12 src/DistWrap.cpp | 32 +- src/DistWrap.h | 4 src/Filters.cpp | 12 src/Forecast.cpp | 4 src/GASInnovation.cpp | 64 +++- src/IMWrap.cpp | 64 ++++ src/IMWrap.h | 1 src/Makevars | 2 src/Makevars.win | 2 src/Mapping.cpp | 247 ++++++++++------- src/Mapping.h | 2 src/MomentWarnings.h |only src/Moments.cpp | 13 src/PIT.cpp | 27 + src/Quantiles.cpp | 36 -- src/RcppExports.cpp | 38 ++ src/SafeFun.cpp | 14 src/TwoPiece.h |only src/TwoPieceInformation.h |only src/ald.cpp | 59 +--- src/ald.h | 1 src/ast.cpp | 180 ++++++++---- src/ast.h | 1 src/ber.cpp | 29 -- src/beta.cpp | 13 src/crps.cpp | 28 + src/exp.cpp | 27 - src/gamma.cpp | 19 - src/ghskt.cpp | 17 - src/mvt.cpp | 23 + src/negbin.cpp | 4 src/poi.cpp | 2 src/skellam.cpp | 146 ++++------ src/skellam.h | 10 src/snorm.cpp | 139 ++++----- src/sstd.cpp | 141 +++------ src/std.cpp | 22 - tests/testthat/test_ConditionalOPG.R |only tests/testthat/test_MultiScaling.R |only tests/testthat/test_NuBounds.R |only tests/testthat/test_OPG.R |only tests/testthat/test_OptimizerRefinement.R |only tests/testthat/test_OptionalHessian.R |only tests/testthat/test_Simulate.R | 7 tests/testthat/test_SimulationExamples.R |only tests/testthat/test_SkewScaling.R |only 108 files changed, 2913 insertions(+), 2072 deletions(-)
Title: Estimation and Diagnostics for Many-Facet Measurement Models
Description: Estimates many-facet ordered-response
measurement models with arbitrary facet counts, rating-scale and
partial-credit parameterizations, a generalized partial-credit extension
with discrimination varying across levels of one selected facet.
Marginal maximum likelihood permits a different facet to own category
steps; joint maximum likelihood requires the same facet for both roles.
Conditional maximum likelihood fits many-facet rating-scale and
partial-credit models by conditioning on person totals, with structural
contrast intervals and no assumed ability distribution.
Experimental two-family estimation and conditional scoring retain explicit
uncertainty limitations. The fit, diagnose and report workflow covers
anchoring, linking, bias and differential-functioning screening, with saved
results for replay. Observed-score generalizability and decision studies
support assessment planning under declared rating designs. Agreement,
rater feedback and conditional classification summaries conne [...truncated...]
Author: Ryuya Komuro [aut, cre, cph]
Maintainer: Ryuya Komuro <ryuya.komuro.c4@tohoku.ac.jp>
Diff between mfrmr versions 0.2.3.1 dated 2026-08-25 and 0.2.4 dated 2026-10-30
mfrmr-0.2.3.1/mfrmr/R/core-jml-gpcm-binary-closure-envelope.R |only mfrmr-0.2.3.1/mfrmr/R/core-jml-gpcm-higher-order-face-lifts.R |only mfrmr-0.2.3.1/mfrmr/R/core-jml-gpcm-response-image-face-chart.R |only mfrmr-0.2.3.1/mfrmr/R/core-jml-gpcm-response-quotient-closure.R |only mfrmr-0.2.3.1/mfrmr/R/core-jml-gpcm-saturated-response-envelope.R |only mfrmr-0.2.3.1/mfrmr/man/build_peer_review_design_review.Rd |only mfrmr-0.2.3.1/mfrmr/man/evaluate_mfrm_recovery.Rd |only mfrmr-0.2.3.1/mfrmr/man/export_mfrm.Rd |only mfrmr-0.2.3.1/mfrmr/man/gpcm_mml_quadrature_sensitivity.Rd |only mfrmr-0.2.3.1/mfrmr/man/gpcm_runtime_guard_coverage.Rd |only mfrmr-0.2.3.1/mfrmr/man/gpcm_score_side_contract.Rd |only mfrmr-0.2.3.1/mfrmr/man/plot.apa_table.Rd |only mfrmr-0.2.3.1/mfrmr/man/plot.mfrm_anchor_review.Rd |only mfrmr-0.2.3.1/mfrmr/man/plot.mfrm_data_description.Rd |only mfrmr-0.2.3.1/mfrmr/man/plot.mfrm_facet_sample_review.Rd |only mfrmr-0.2.3.1/mfrmr/man/plot.mfrm_facets_run.Rd |only mfrmr-0.2.3.1/mfrmr/man/plot.mfrm_signal_detection.Rd |only mfrmr-0.2.3.1/mfrmr/man/plot.mfrm_summary_table_bundle.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.apa_table.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_anchor_review.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_apa_outputs.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_bias.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_data_description.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_facet_dashboard.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_linking_review.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_misfit_casebook.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_model_choice_review.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_network_review.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_peer_review_design_review.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_person_fit_indices.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_plausible_values.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_reporting_checklist.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_response_time_review.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_summary_table_bundle.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_threshold_profiles.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_unit_prediction.Rd |only mfrmr-0.2.3.1/mfrmr/man/summary.mfrm_weighting_review.Rd |only mfrmr-0.2.3.1/mfrmr/tests/testthat/test-jml-gpcm-binary-closure-envelope.R |only mfrmr-0.2.3.1/mfrmr/tests/testthat/test-jml-gpcm-higher-order-face-lifts.R |only mfrmr-0.2.3.1/mfrmr/tests/testthat/test-jml-gpcm-response-image-face-chart.R |only mfrmr-0.2.3.1/mfrmr/tests/testthat/test-jml-gpcm-response-quotient-closure.R |only mfrmr-0.2.3.1/mfrmr/tests/testthat/test-jml-gpcm-saturated-response-envelope.R |only mfrmr-0.2.3.1/mfrmr/tests/testthat/test-lme4-confint-helper.R |only mfrmr-0.2.4/mfrmr/DESCRIPTION | 49 mfrmr-0.2.4/mfrmr/MD5 | 1553 - mfrmr-0.2.4/mfrmr/NAMESPACE | 403 mfrmr-0.2.4/mfrmr/NEWS.md | 183 mfrmr-0.2.4/mfrmr/R/aaa-static-tables.R |only mfrmr-0.2.4/mfrmr/R/api-advanced.R | 2522 + mfrmr-0.2.4/mfrmr/R/api-as-ggplot.R | 1366 + mfrmr-0.2.4/mfrmr/R/api-automated-scoring.R |only mfrmr-0.2.4/mfrmr/R/api-bias-collection.R | 849 mfrmr-0.2.4/mfrmr/R/api-calibration-methods.R |only mfrmr-0.2.4/mfrmr/R/api-calibration.R |only mfrmr-0.2.4/mfrmr/R/api-classification.R |only mfrmr-0.2.4/mfrmr/R/api-cluster-comparison.R |only mfrmr-0.2.4/mfrmr/R/api-dashboards.R | 281 mfrmr-0.2.4/mfrmr/R/api-design-connectivity.R |only mfrmr-0.2.4/mfrmr/R/api-design-recommendation.R |only mfrmr-0.2.4/mfrmr/R/api-estimation.R |13172 +++++----- mfrmr-0.2.4/mfrmr/R/api-export-bundles.R | 1190 mfrmr-0.2.4/mfrmr/R/api-extended-calibration-intervals.R |only mfrmr-0.2.4/mfrmr/R/api-extended-comparison.R |only mfrmr-0.2.4/mfrmr/R/api-extended-results.R |only mfrmr-0.2.4/mfrmr/R/api-facet-equivalence.R | 620 mfrmr-0.2.4/mfrmr/R/api-facet-intervals.R |only mfrmr-0.2.4/mfrmr/R/api-facets-results.R |only mfrmr-0.2.4/mfrmr/R/api-fair-reference-intervals.R |only mfrmr-0.2.4/mfrmr/R/api-feature-clustering.R |only mfrmr-0.2.4/mfrmr/R/api-fit-extractors.R |only mfrmr-0.2.4/mfrmr/R/api-fit-responses.R |only mfrmr-0.2.4/mfrmr/R/api-generalizability.R | 813 mfrmr-0.2.4/mfrmr/R/api-gpcm-bootstrap.R |only mfrmr-0.2.4/mfrmr/R/api-gpcm-curve-intervals.R |only mfrmr-0.2.4/mfrmr/R/api-gpcm-intervals.R |only mfrmr-0.2.4/mfrmr/R/api-gpcm-reporting.R |only mfrmr-0.2.4/mfrmr/R/api-gstudy-entry.R |only mfrmr-0.2.4/mfrmr/R/api-hierarchical-audit.R | 1141 mfrmr-0.2.4/mfrmr/R/api-hierarchical-clustering.R |only mfrmr-0.2.4/mfrmr/R/api-import.R | 707 mfrmr-0.2.4/mfrmr/R/api-imputed-estimation.R |only mfrmr-0.2.4/mfrmr/R/api-jml-adjustment.R |only mfrmr-0.2.4/mfrmr/R/api-krippendorff-alpha.R |only mfrmr-0.2.4/mfrmr/R/api-mantel-haenszel.R |only mfrmr-0.2.4/mfrmr/R/api-methods-print.R | 84 mfrmr-0.2.4/mfrmr/R/api-methods.R | 2451 + mfrmr-0.2.4/mfrmr/R/api-model-export.R |only mfrmr-0.2.4/mfrmr/R/api-model-maps.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-d-compare.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-dstudy-delta.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-dstudy-intervals.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-dstudy-mls.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-dstudy-score.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-dstudy-sem.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-dstudy-spectral.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-dstudy-summary.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-dstudy-two-facet.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-gstudy-covariance.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-gstudy-intervals.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-gstudy-residual.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-gstudy-vcov.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-gtheory-contrast-profile.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-gtheory-covariance-profile.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-gtheory-profile.R |only mfrmr-0.2.4/mfrmr/R/api-multivariate-gtheory-variance-profile.R |only 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mfrmr-0.2.4/mfrmr/man/displacement_table.Rd | 24 mfrmr-0.2.4/mfrmr/man/draw_mfrm_resamples.Rd | 39 mfrmr-0.2.4/mfrmr/man/estimate_all_bias.Rd | 228 mfrmr-0.2.4/mfrmr/man/estimate_bias.Rd | 430 mfrmr-0.2.4/mfrmr/man/estimation_iteration_report.Rd | 8 mfrmr-0.2.4/mfrmr/man/evaluate_mfrm_design.Rd | 143 mfrmr-0.2.4/mfrmr/man/evaluate_mfrm_diagnostic_screening.Rd | 16 mfrmr-0.2.4/mfrmr/man/evaluate_mfrm_signal_detection.Rd | 188 mfrmr-0.2.4/mfrmr/man/export_mfrm_bundle.Rd | 63 mfrmr-0.2.4/mfrmr/man/export_mfrm_model.Rd |only mfrmr-0.2.4/mfrmr/man/export_mfrm_results.Rd | 92 mfrmr-0.2.4/mfrmr/man/export_mfrm_tables.Rd |only mfrmr-0.2.4/mfrmr/man/export_summary_appendix.Rd | 28 mfrmr-0.2.4/mfrmr/man/extract_mfrm_sim_spec.Rd | 33 mfrmr-0.2.4/mfrmr/man/facet_quality_dashboard.Rd | 106 mfrmr-0.2.4/mfrmr/man/facet_small_sample_review.Rd | 135 mfrmr-0.2.4/mfrmr/man/facet_statistics_report.Rd | 16 mfrmr-0.2.4/mfrmr/man/facets_chisq_table.Rd | 30 mfrmr-0.2.4/mfrmr/man/facets_feature_coverage.Rd | 42 mfrmr-0.2.4/mfrmr/man/facets_fit_df_guide.Rd | 9 mfrmr-0.2.4/mfrmr/man/facets_fit_review.Rd | 16 mfrmr-0.2.4/mfrmr/man/facets_output_contract_review.Rd | 32 mfrmr-0.2.4/mfrmr/man/facets_output_file_bundle.Rd | 39 mfrmr-0.2.4/mfrmr/man/facets_positioning_guide.Rd | 7 mfrmr-0.2.4/mfrmr/man/facets_visual_contract.Rd | 2 mfrmr-0.2.4/mfrmr/man/fair_average_table.Rd | 200 mfrmr-0.2.4/mfrmr/man/figures/logo.png |binary mfrmr-0.2.4/mfrmr/man/figures/readme-wright.png |only mfrmr-0.2.4/mfrmr/man/figures/visual-gallery.png |only mfrmr-0.2.4/mfrmr/man/fit_measures_table.Rd | 88 mfrmr-0.2.4/mfrmr/man/fit_mfrm.Rd | 1896 + mfrmr-0.2.4/mfrmr/man/fit_mfrm_imputed.Rd |only mfrmr-0.2.4/mfrmr/man/fit_mfrm_random_rater.Rd |only mfrmr-0.2.4/mfrmr/man/fit_mfrm_testlet.Rd |only mfrmr-0.2.4/mfrmr/man/fit_rater_accuracy.Rd |only mfrmr-0.2.4/mfrmr/man/fit_rater_network.Rd |only mfrmr-0.2.4/mfrmr/man/gpcm_capability_matrix.Rd | 408 mfrmr-0.2.4/mfrmr/man/gwet_ac2_table.Rd |only mfrmr-0.2.4/mfrmr/man/import_erm_fit.Rd | 43 mfrmr-0.2.4/mfrmr/man/import_mirt_fit.Rd | 90 mfrmr-0.2.4/mfrmr/man/import_tam_fit.Rd | 65 mfrmr-0.2.4/mfrmr/man/interaction_effect_table.Rd | 67 mfrmr-0.2.4/mfrmr/man/interrater_agreement_table.Rd | 128 mfrmr-0.2.4/mfrmr/man/krippendorff_alpha_table.Rd |only mfrmr-0.2.4/mfrmr/man/launch_mfrmr_viewer.Rd | 4 mfrmr-0.2.4/mfrmr/man/list_mfrmr_data.Rd | 29 mfrmr-0.2.4/mfrmr/man/load_mfrmr_data.Rd | 37 mfrmr-0.2.4/mfrmr/man/make_anchor_table.Rd | 89 mfrmr-0.2.4/mfrmr/man/mantel_haenszel_table.Rd |only mfrmr-0.2.4/mfrmr/man/measurable_summary_table.Rd | 18 mfrmr-0.2.4/mfrmr/man/mfrm_calibration_capabilities.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_calibration_methods.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_calibration_score_methods.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_calibration_workflow.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_cluster.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_cluster_compare.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_cluster_hierarchical.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_cluster_imputed.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_cluster_kmeans.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_curve_intervals.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_d_study.Rd | 448 mfrmr-0.2.4/mfrmr/man/mfrm_d_study_main_effects.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_dff_methods.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_facet_intervals.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_features.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_fit_extractors.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_fit_responses.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_g_study.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_generalizability.Rd | 157 mfrmr-0.2.4/mfrmr/man/mfrm_misfit_thresholds.Rd | 5 mfrmr-0.2.4/mfrmr/man/mfrm_multivariate_d_compare.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_network_analysis.Rd | 74 mfrmr-0.2.4/mfrmr/man/mfrm_pca.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_population_intervals.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_random_rater_intervals.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_report.Rd | 417 mfrmr-0.2.4/mfrmr/man/mfrm_residual_network.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_response_diagnostics.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_response_imputations.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_results.Rd | 354 mfrmr-0.2.4/mfrmr/man/mfrm_results_interactive.Rd | 4 mfrmr-0.2.4/mfrmr/man/mfrm_screening_performance.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_screening_sensitivity.Rd |only mfrmr-0.2.4/mfrmr/man/mfrm_threshold_profiles.Rd | 48 mfrmr-0.2.4/mfrmr/man/mfrmr-package.Rd | 399 mfrmr-0.2.4/mfrmr/man/mfrmr_agreement_data.Rd |only mfrmr-0.2.4/mfrmr/man/mfrmr_compatibility_layer.Rd | 562 mfrmr-0.2.4/mfrmr/man/mfrmr_example_data.Rd | 2 mfrmr-0.2.4/mfrmr/man/mfrmr_gtheory_data.Rd |only mfrmr-0.2.4/mfrmr/man/mfrmr_interval_guide.Rd | 113 mfrmr-0.2.4/mfrmr/man/mfrmr_linking_and_dff.Rd | 583 mfrmr-0.2.4/mfrmr/man/mfrmr_methods_reference.Rd |only mfrmr-0.2.4/mfrmr/man/mfrmr_model_maps.Rd |only mfrmr-0.2.4/mfrmr/man/mfrmr_output_guide.Rd | 180 mfrmr-0.2.4/mfrmr/man/mfrmr_plot_migration.Rd |only mfrmr-0.2.4/mfrmr/man/mfrmr_reporting_and_apa.Rd | 223 mfrmr-0.2.4/mfrmr/man/mfrmr_reports_and_tables.Rd | 181 mfrmr-0.2.4/mfrmr/man/mfrmr_visual_diagnostics.Rd | 486 mfrmr-0.2.4/mfrmr/man/mfrmr_workflow_methods.Rd | 877 mfrmr-0.2.4/mfrmr/man/mml_quadrature_sensitivity.Rd |only mfrmr-0.2.4/mfrmr/man/normalize_conquest_overlap_exports.Rd | 23 mfrmr-0.2.4/mfrmr/man/normalize_conquest_overlap_files.Rd | 13 mfrmr-0.2.4/mfrmr/man/normalize_conquest_overlap_tables.Rd | 4 mfrmr-0.2.4/mfrmr/man/ordinal_logistic_table.Rd |only mfrmr-0.2.4/mfrmr/man/pairwise_icc_table.Rd |only mfrmr-0.2.4/mfrmr/man/pairwise_kappa_table.Rd |only mfrmr-0.2.4/mfrmr/man/plot.mfrm_bundle.Rd | 93 mfrmr-0.2.4/mfrmr/man/plot.mfrm_clusters.Rd |only mfrmr-0.2.4/mfrmr/man/plot.mfrm_d_study.Rd |only mfrmr-0.2.4/mfrmr/man/plot.mfrm_design_evaluation.Rd | 19 mfrmr-0.2.4/mfrmr/man/plot.mfrm_diagnostic_screening.Rd | 17 mfrmr-0.2.4/mfrmr/man/plot.mfrm_dif.Rd |only mfrmr-0.2.4/mfrmr/man/plot.mfrm_dstudy_intervals.Rd |only mfrmr-0.2.4/mfrmr/man/plot.mfrm_facet_nesting.Rd | 31 mfrmr-0.2.4/mfrmr/man/plot.mfrm_fit.Rd | 344 mfrmr-0.2.4/mfrmr/man/plot.mfrm_multivariate_d_study.Rd |only mfrmr-0.2.4/mfrmr/man/plot.mfrm_multivariate_gstudy.Rd |only mfrmr-0.2.4/mfrmr/man/plot.mfrm_recovery_simulation.Rd | 35 mfrmr-0.2.4/mfrmr/man/plot.mfrm_slope_intervals.Rd |only mfrmr-0.2.4/mfrmr/man/plot_anchor_drift.Rd | 81 mfrmr-0.2.4/mfrmr/man/plot_apa_figure_one.Rd | 57 mfrmr-0.2.4/mfrmr/man/plot_bias_interaction.Rd | 102 mfrmr-0.2.4/mfrmr/man/plot_bubble.Rd | 105 mfrmr-0.2.4/mfrmr/man/plot_compare_mfrm.Rd |only mfrmr-0.2.4/mfrmr/man/plot_data.Rd | 95 mfrmr-0.2.4/mfrmr/man/plot_data_components.Rd | 32 mfrmr-0.2.4/mfrmr/man/plot_dif_heatmap.Rd | 29 mfrmr-0.2.4/mfrmr/man/plot_dif_summary.Rd | 63 mfrmr-0.2.4/mfrmr/man/plot_displacement.Rd | 61 mfrmr-0.2.4/mfrmr/man/plot_facet_equivalence.Rd | 67 mfrmr-0.2.4/mfrmr/man/plot_facet_quality_dashboard.Rd | 52 mfrmr-0.2.4/mfrmr/man/plot_facets_chisq.Rd | 77 mfrmr-0.2.4/mfrmr/man/plot_fair_average.Rd | 197 mfrmr-0.2.4/mfrmr/man/plot_guttman_scalogram.Rd | 53 mfrmr-0.2.4/mfrmr/man/plot_information.Rd | 24 mfrmr-0.2.4/mfrmr/man/plot_interrater_agreement.Rd | 137 mfrmr-0.2.4/mfrmr/man/plot_local_dependence_heatmap.Rd | 80 mfrmr-0.2.4/mfrmr/man/plot_marginal_fit.Rd | 100 mfrmr-0.2.4/mfrmr/man/plot_marginal_pairwise.Rd | 102 mfrmr-0.2.4/mfrmr/man/plot_person_fit.Rd | 63 mfrmr-0.2.4/mfrmr/man/plot_qc_dashboard.Rd | 97 mfrmr-0.2.4/mfrmr/man/plot_qc_pipeline.Rd | 65 mfrmr-0.2.4/mfrmr/man/plot_rater_agreement_heatmap.Rd | 66 mfrmr-0.2.4/mfrmr/man/plot_rater_severity_profile.Rd | 140 mfrmr-0.2.4/mfrmr/man/plot_rater_trajectory.Rd | 53 mfrmr-0.2.4/mfrmr/man/plot_reliability_snapshot.Rd | 94 mfrmr-0.2.4/mfrmr/man/plot_residual_matrix.Rd | 55 mfrmr-0.2.4/mfrmr/man/plot_residual_pca.Rd | 68 mfrmr-0.2.4/mfrmr/man/plot_residual_qq.Rd | 53 mfrmr-0.2.4/mfrmr/man/plot_response_time_review.Rd | 46 mfrmr-0.2.4/mfrmr/man/plot_shrinkage_funnel.Rd | 60 mfrmr-0.2.4/mfrmr/man/plot_threshold_ladder.Rd | 65 mfrmr-0.2.4/mfrmr/man/plot_unexpected.Rd | 91 mfrmr-0.2.4/mfrmr/man/plot_wright_unified.Rd | 71 mfrmr-0.2.4/mfrmr/man/pool_mfrm_imputed.Rd |only mfrmr-0.2.4/mfrmr/man/precision_review_report.Rd | 28 mfrmr-0.2.4/mfrmr/man/predict.mfrm_random_rater.Rd |only mfrmr-0.2.4/mfrmr/man/predict.mfrm_testlet.Rd |only mfrmr-0.2.4/mfrmr/man/predict_mfrm_population.Rd | 26 mfrmr-0.2.4/mfrmr/man/predict_mfrm_units.Rd | 410 mfrmr-0.2.4/mfrmr/man/print.mfrm_apa_text.Rd | 12 mfrmr-0.2.4/mfrmr/man/q3_statistic.Rd | 66 mfrmr-0.2.4/mfrmr/man/rater_centrality_table.Rd |only mfrmr-0.2.4/mfrmr/man/rater_halo_network_analysis.Rd | 185 mfrmr-0.2.4/mfrmr/man/rater_network_analysis.Rd | 122 mfrmr-0.2.4/mfrmr/man/rating_scale_table.Rd | 147 mfrmr-0.2.4/mfrmr/man/read_facets_fit_table.Rd | 17 mfrmr-0.2.4/mfrmr/man/read_facets_results.Rd |only mfrmr-0.2.4/mfrmr/man/read_mfrm_posterior.Rd |only mfrmr-0.2.4/mfrmr/man/recode_missing_codes.Rd | 40 mfrmr-0.2.4/mfrmr/man/recommend_mfrm_design.Rd | 199 mfrmr-0.2.4/mfrmr/man/reference_case_benchmark.Rd | 10 mfrmr-0.2.4/mfrmr/man/reference_case_review.Rd | 12 mfrmr-0.2.4/mfrmr/man/reporting_checklist.Rd | 120 mfrmr-0.2.4/mfrmr/man/response_time_review.Rd | 50 mfrmr-0.2.4/mfrmr/man/review_conquest_overlap.Rd | 50 mfrmr-0.2.4/mfrmr/man/review_mfrm_anchors.Rd | 256 mfrmr-0.2.4/mfrmr/man/review_peer_design.Rd |only mfrmr-0.2.4/mfrmr/man/run_mfrm_facets.Rd | 82 mfrmr-0.2.4/mfrmr/man/run_qc_pipeline.Rd | 140 mfrmr-0.2.4/mfrmr/man/sample_mfrm_plausible_values.Rd | 111 mfrmr-0.2.4/mfrmr/man/score_comparison_table.Rd |only mfrmr-0.2.4/mfrmr/man/score_mfrm_persons.Rd |only mfrmr-0.2.4/mfrmr/man/score_mfrm_random_rater.Rd |only mfrmr-0.2.4/mfrmr/man/shrinkage_report.Rd | 6 mfrmr-0.2.4/mfrmr/man/simulate_mfrm_data.Rd | 66 mfrmr-0.2.4/mfrmr/man/simulate_mfrm_recovery.Rd |only mfrmr-0.2.4/mfrmr/man/specifications_report.Rd | 9 mfrmr-0.2.4/mfrmr/man/subset_connectivity_report.Rd | 57 mfrmr-0.2.4/mfrmr/man/summary.mfrm_bundle.Rd | 4 mfrmr-0.2.4/mfrmr/man/summary.mfrm_design_evaluation.Rd | 50 mfrmr-0.2.4/mfrmr/man/summary.mfrm_diagnostic_screening.Rd | 16 mfrmr-0.2.4/mfrmr/man/summary.mfrm_diagnostics.Rd | 50 mfrmr-0.2.4/mfrmr/man/summary.mfrm_facets_run.Rd | 4 mfrmr-0.2.4/mfrmr/man/summary.mfrm_fit.Rd | 144 mfrmr-0.2.4/mfrmr/man/summary.mfrm_jeffreys_fit.Rd |only mfrmr-0.2.4/mfrmr/man/summary.mfrm_multivariate_d_study.Rd |only mfrmr-0.2.4/mfrmr/man/summary.mfrm_population_prediction.Rd | 26 mfrmr-0.2.4/mfrmr/man/summary.mfrm_signal_detection.Rd | 40 mfrmr-0.2.4/mfrmr/man/unexpected_after_bias_table.Rd | 39 mfrmr-0.2.4/mfrmr/man/unexpected_response_table.Rd | 67 mfrmr-0.2.4/mfrmr/man/vcov.mfrm_multivariate_gstudy.Rd |only mfrmr-0.2.4/mfrmr/man/write_mfrm_residual_file.Rd | 28 mfrmr-0.2.4/mfrmr/man/write_mfrm_subset_file.Rd | 25 mfrmr-0.2.4/mfrmr/src/mml_backend.cpp | 181 mfrmr-0.2.4/mfrmr/tests/testthat.R | 140 mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/anchored-facet-information.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/anchored-facet-information.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/anchored-gpcm.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/anchored-gpcm.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/calibration-gpcm-separate.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/calibration-gpcm-shared.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/calibration-gpcm.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/cml-comparison.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-450-bias.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-450-measures.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-450-pairwise.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-450-ratings.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-450-score.2.txt |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-450-unequal-ratings.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-anchor-origin.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-bias-fractional-tails.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-graph-binary_csv.txt |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-graph-pcm_fixed.txt |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-group-anchor.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-group-anchor.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-group-extreme-high-g-score.txt |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-group-extreme-high-x-score.txt |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-group-extreme-low-g-score.txt |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-group-extreme-low-x-score.txt |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-group-origin-score.txt |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-group-restricted-score.txt |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-native-comma-score.txt |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-native-delimited.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-native-semicolon-score.txt |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-pcm-correlation-input.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-pcm-correlation-reference.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-pcm-df-precision.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-xtreme-bias-reference.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-xtreme-fractional-reference.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-xtreme-input.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/facets-xtreme-reference.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/fitted-comparisons.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/genova-31-nested.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/genova-component-policy-components.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/genova-component-policy-input.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/genova-component-policy-reference.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-adaptive-profiles.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-adaptive-profiles.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-explicit-start.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-explicit-start.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-joint-information.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-joint-information.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-numerical-repair.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-profile-intervals.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-profile-intervals.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-rank-deficient-source.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-result-held.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-result.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-result.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-small-optimization-residual.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-small-optimization-residual.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-wald-N20-b09.free.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-wald-N20-observed.null.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-wald-result.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gmfrm-wald.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gpcm-profile-separate.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/gpcm-profile-separate.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/jml-adjustment-general.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/jml-adjustment-reference.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/jml-adjustment.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/legacy-anchored-fit.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/legacy-anchored-fit.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/mfrm-conditional-scoring-gpcm.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/mfrm-conditional-scoring-gpcm.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/mfrm-fit-0.2.2-pcm-jml.rds |binary mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/mfrm-scoring-prior-reference.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/mfrm-scoring-prior-reference.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/mml-comparison-intervals.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/native-location-fixed-gpcm.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/native-location-fixed-gpcm.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/native-location-pcm-regression.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/native-location-rsm-zero-boundary.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/ordinary-score-integration.md |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/ordinary-score-integration.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/partial-comparisons.rds |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/tam-jml-0.2.4-person.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/fixtures/tam-jml-0.2.4-response.csv |only mfrmr-0.2.4/mfrmr/tests/testthat/helper-adaptive-fitting.R |only mfrmr-0.2.4/mfrmr/tests/testthat/helper-cran-information.R |only mfrmr-0.2.4/mfrmr/tests/testthat/helper-fixed-calibration-reference.R |only mfrmr-0.2.4/mfrmr/tests/testthat/helper-fixtures.R | 23 mfrmr-0.2.4/mfrmr/tests/testthat/helper-gmfrm-information.R |only mfrmr-0.2.4/mfrmr/tests/testthat/helper-gmfrm-response.R |only mfrmr-0.2.4/mfrmr/tests/testthat/helper-graphics-observers.R |only mfrmr-0.2.4/mfrmr/tests/testthat/helper-jml-gpcm-reference-fixtures.R |only mfrmr-0.2.4/mfrmr/tests/testthat/helper-private-validation.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-adaptive-fitting.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-adaptive-pattern-reuse.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-adaptive-quadrature-review.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-agreement-primary-estimates.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-agreement-reporting.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-anchor-centering.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-anchor-equating.R | 144 mfrmr-0.2.4/mfrmr/tests/testthat/test-anchor-migration.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-anchor-origin.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-anchor-population-estimation.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-anchor-population-intervals.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-anchor-population-replay.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-anchor-source-uncertainty.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-anchored-calibration.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-anchored-diagnostics.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-anchored-facet-intervals.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-anchored-gpcm.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-api-error-and-edge-contracts.R | 20 mfrmr-0.2.4/mfrmr/tests/testthat/test-api-guard-paths.R | 8 mfrmr-0.2.4/mfrmr/tests/testthat/test-api-migration.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-api-public-method-contracts.R | 53 mfrmr-0.2.4/mfrmr/tests/testthat/test-api-s3-consistency.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-appendix-table-collisions.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-as-ggplot.R | 79 mfrmr-0.2.4/mfrmr/tests/testthat/test-assignment-template.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-automated-scoring.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-bias-collection.R | 149 mfrmr-0.2.4/mfrmr/tests/testthat/test-bias-numerics.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-bias-pairwise-semantics.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-bundle-dispatch-contracts.R | 2 mfrmr-0.2.4/mfrmr/tests/testthat/test-bundle-summary-privacy.R | 2 mfrmr-0.2.4/mfrmr/tests/testthat/test-calc-subsets-parity.R | 13 mfrmr-0.2.4/mfrmr/tests/testthat/test-calibration-plot-conversion.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-calibration-public-api.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-category-context-curves.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-category-owner-reporting.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-category-step-support-audit.R | 4 mfrmr-0.2.4/mfrmr/tests/testthat/test-category-threshold-availability.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-category-variance.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-ci-api-consistency.R | 10 mfrmr-0.2.4/mfrmr/tests/testthat/test-classification.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-cluster-comparison.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-cluster-plots.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-cluster-summary-ggplot.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-cml-comparisons.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-cml-interval-display.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-cml.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-co-membership-ggplot.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-comparison-review.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-compatibility-aliases.R | 7 mfrmr-0.2.4/mfrmr/tests/testthat/test-conditional-scoring.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-console-output-contract.R | 78 mfrmr-0.2.4/mfrmr/tests/testthat/test-core-behavior-contracts.R | 137 mfrmr-0.2.4/mfrmr/tests/testthat/test-core-edge-paths.R | 163 mfrmr-0.2.4/mfrmr/tests/testthat/test-core-workflow.R | 58 mfrmr-0.2.4/mfrmr/tests/testthat/test-cran-smoke.R | 72 mfrmr-0.2.4/mfrmr/tests/testthat/test-d-study-plots.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-data-and-citation.R | 21 mfrmr-0.2.4/mfrmr/tests/testthat/test-data-processing.R | 4 mfrmr-0.2.4/mfrmr/tests/testthat/test-decision-probabilities.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dendrogram-ggplot.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-descriptive-review-contract.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-design-evaluation-denominators.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-design-recovery-coordinates.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dff-plot-support.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dff-refit-availability.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dff-row-matching.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-diagnostic-responses.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-diagnostic-screening-validation.R | 30 mfrmr-0.2.4/mfrmr/tests/testthat/test-diagnostics-consumer-identity.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dif-module.R | 139 mfrmr-0.2.4/mfrmr/tests/testthat/test-documentation-terminology.R | 116 mfrmr-0.2.4/mfrmr/tests/testthat/test-downstream-reporting.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-contrast-profile.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-delta.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-f-region-resolution.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-general-nested-intervals.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-legend-replay.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-method-selection.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-mls-inversion.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-nested-intervals.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-phi-differences.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-reml-profile.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-residual-sem.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-score-intervals.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-sem-intervals.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-sem-profile.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-spectral-f.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-dstudy-summary.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-edge-cases.R | 18 mfrmr-0.2.4/mfrmr/tests/testthat/test-equating-graph.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-error-handling.R | 9 mfrmr-0.2.4/mfrmr/tests/testthat/test-estimability-audit.R | 2 mfrmr-0.2.4/mfrmr/tests/testthat/test-estimation-core.R | 37 mfrmr-0.2.4/mfrmr/tests/testthat/test-estimator-output-identity.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-example-datasets.R | 32 mfrmr-0.2.4/mfrmr/tests/testthat/test-example-policy.R | 241 mfrmr-0.2.4/mfrmr/tests/testthat/test-expanded-summary-plot.R | 2 mfrmr-0.2.4/mfrmr/tests/testthat/test-expected-point-measure.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-experimental-reporting.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-export-bundles.R | 146 mfrmr-0.2.4/mfrmr/tests/testthat/test-export-entry.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-export-mfrm.R | 42 mfrmr-0.2.4/mfrmr/tests/testthat/test-extended-comparison.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-extended-example-replay.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-extended-plot-views.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-extended-results.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-facet-centering.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-facet-dashboard.R | 148 mfrmr-0.2.4/mfrmr/tests/testthat/test-facet-equivalence.R | 285 mfrmr-0.2.4/mfrmr/tests/testthat/test-facet-interactions.R | 61 mfrmr-0.2.4/mfrmr/tests/testthat/test-facet-interval-reporting.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-facet-intervals.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-facets-display-labels.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-facets-fit-table-import.R | 478 mfrmr-0.2.4/mfrmr/tests/testthat/test-facets-manual-boundaries.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-facets-manual-consistency.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-facets-results.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-facets-scorefile-delimiters.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-facets-xtreme.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fair-bounded.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fair-delta.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fair-interval-contract.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fair-jeffreys-delta.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fair-jeffreys.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fair-monte-carlo.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fair-reference.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fair-score-plots.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-feature-clustering.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-first-use-readiness-contracts.R | 4 mfrmr-0.2.4/mfrmr/tests/testthat/test-fit-confint.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fit-extractors.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fit-measures-consistency.R | 86 mfrmr-0.2.4/mfrmr/tests/testthat/test-fit-measures-scope.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fit-pathway.R | 5 mfrmr-0.2.4/mfrmr/tests/testthat/test-fit-progress.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fit-responses.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fit-screening-coverage.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fit-statistics-formulas.R | 89 mfrmr-0.2.4/mfrmr/tests/testthat/test-fitted-comparisons.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fixed-calibration-lifecycle.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-fixed-measure-precision.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-gauss-hermite-weights.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-generalizability-missing.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-generator-coordinates.R |only 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mfrmr-0.2.4/mfrmr/tests/testthat/test-results-csv-encoding.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-results-precision-decision.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-results-readiness-propagation.R | 6 mfrmr-0.2.4/mfrmr/tests/testthat/test-results-replay.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-resumable-fits.R | 142 mfrmr-0.2.4/mfrmr/tests/testthat/test-rsm-pcm-nesting.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-score-comparison.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-scoring-prior.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-screening-performance.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-screening-sensitivity.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-secondary-result-identity.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-separation-interpretation.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-shrinkage-numerics.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-shrinkage-replay.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-shrinkage.R | 42 mfrmr-0.2.4/mfrmr/tests/testthat/test-signal-trials.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-simulation-design.R | 118 mfrmr-0.2.4/mfrmr/tests/testthat/test-simulation-example-replay.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-simulation-files.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-simulation-template.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-single-person-calibration.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-small-sample-model-inference.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-source-posterior-numerics.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-sparse-simulation.R | 2 mfrmr-0.2.4/mfrmr/tests/testthat/test-static-table-isolation.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-study-report.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-summary-table-bundle.R | 29 mfrmr-0.2.4/mfrmr/tests/testthat/test-testlet-integration.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-testlet-population.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-testlet-selection.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-testlet.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-unexpected-prevalence.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-validation-interval-recovery.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-validation-jml-stages.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-validation-lr-inputs.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-validation-mml-stages.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-validation-multi-output.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-validation-output-accounting.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-validation-recovery.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-vignette-artifacts.R | 7 mfrmr-0.2.4/mfrmr/tests/testthat/test-visual-reporting-template.R | 49 mfrmr-0.2.4/mfrmr/tests/testthat/test-weighted-agreement.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-weighting-audit.R | 23 mfrmr-0.2.4/mfrmr/tests/testthat/test-workflow-output-routing.R |only mfrmr-0.2.4/mfrmr/tests/testthat/test-wright-facets-style.R | 83 mfrmr-0.2.4/mfrmr/vignettes/figures |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-external-features.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-facet-intervals.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-facets-migration.Rmd | 1528 - mfrmr-0.2.4/mfrmr/vignettes/mfrmr-gpcm-scope.Rmd | 3157 ++ mfrmr-0.2.4/mfrmr/vignettes/mfrmr-gtheory.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-linking-and-dff.Rmd | 1578 + mfrmr-0.2.4/mfrmr/vignettes/mfrmr-mml-and-marginal-fit.Rmd | 241 mfrmr-0.2.4/mfrmr/vignettes/mfrmr-model-choice.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-networks-and-reporting.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-portable-calibration.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-random-raters.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-rating-agreement.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-reporting-and-apa.Rmd | 1127 mfrmr-0.2.4/mfrmr/vignettes/mfrmr-response-imputation.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-screening-performance.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-testlet-applications.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-testlets.Rmd |only mfrmr-0.2.4/mfrmr/vignettes/mfrmr-visual-diagnostics.Rmd | 1071 mfrmr-0.2.4/mfrmr/vignettes/mfrmr-workflow.Rmd | 1563 - 1106 files changed, 93307 insertions(+), 41192 deletions(-)
Title: Read/Write Files in Key-Value-Hierarchy Format
Description: The format KVH is a lightweight format that can be read/written both by humans and machines.
It can be useful in situations where XML or alike formats seem to be an overkill.
We provide an ability to parse KVH files in R pretty fast due to 'Rcpp' use.
Author: Serguei Sokol [aut, cre]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between kvh versions 1.5.0 dated 2026-09-08 and 1.5.1 dated 2026-10-30
kvh-1.5.0/kvh/tests/testthat/res.RData |only kvh-1.5.1/kvh/DESCRIPTION | 8 +-- kvh-1.5.1/kvh/MD5 | 11 ++--- kvh-1.5.1/kvh/NEWS | 4 + kvh-1.5.1/kvh/inst/include/kvh.h | 9 ++++ kvh-1.5.1/kvh/src/rcpp_kvh.cpp | 70 ++++++++++++-------------------- kvh-1.5.1/kvh/tests/testthat/test_kvh.R | 17 +++++++ 7 files changed, 66 insertions(+), 53 deletions(-)
Title: Translates an R Function to a C++ Function
Description: Enable translation of a tiny subset of R to C++. The user has to define a R function which gets translated. For a full list of possible functions check the documentation. After translation an R function is returned which is a shallow wrapper around the C++ code. Alternatively an external pointer to the C++ function is returned to the user. The intention of the package is to generate fast functions which can be used as ode-system or during optimization.
Author: Kraemer Konrad [aut, cre]
Maintainer: Kraemer Konrad <konrad_kraemer@yahoo.de>
Diff between ast2ast versions 1.1.1 dated 2026-10-26 and 1.1.2 dated 2026-10-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 5 +++++ inst/include/etr_bits/Core/Types.hpp | 10 +++++++--- 4 files changed, 19 insertions(+), 10 deletions(-)
Title: Designing Stated Preference Experiments
Description: Contemporary software commonly used to design stated preference experiments are expensive and the code is closed source. This is a free software package with an easy to use interface to make flexible stated preference experimental designs using state-of-the-art methods. For an overview of stated choice experimental design theory, see e.g., Rose, J. M. & Bliemer, M. C. J. (2014) in Hess S. & Daly. A. <doi:10.4337/9781781003152>. The package website can be accessed at <https://spdesign.edsandorf.me>. We acknowledge funding from the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant INSPiRE (Grant agreement ID: 793163). The package features in Mariel et al. (2025) Environmental Valuation with Discrete Choice Experiments in R. (<doi:10.1007/978-3-031-89338-4>).
Author: Erlend Dancke Sandorf [aut, cre],
Danny Campbell [aut]
Maintainer: Erlend Dancke Sandorf <erlend.dancke.sandorf@nmbu.no>
Diff between spdesign versions 0.0.7 dated 2026-10-06 and 0.0.8 dated 2026-10-30
spdesign-0.0.7/spdesign/man/generate_rsc_candidate.Rd |only spdesign-0.0.7/spdesign/man/random_design_candidate.Rd |only spdesign-0.0.8/spdesign/DESCRIPTION | 7 spdesign-0.0.8/spdesign/MD5 | 40 +- spdesign-0.0.8/spdesign/NEWS.md | 61 ++- spdesign-0.0.8/spdesign/R/design.R | 55 ++- spdesign-0.0.8/spdesign/R/federov.R | 13 spdesign-0.0.8/spdesign/R/methods.R | 29 - spdesign-0.0.8/spdesign/R/random.R | 18 - spdesign-0.0.8/spdesign/R/rsc.R | 174 ++++++---- spdesign-0.0.8/spdesign/inst/doc/syntax.Rmd | 13 spdesign-0.0.8/spdesign/inst/doc/syntax.html | 28 + spdesign-0.0.8/spdesign/man/build_balanced_design_candidate.Rd |only spdesign-0.0.8/spdesign/man/cor.Rd | 15 spdesign-0.0.8/spdesign/man/draw_design_candidate.Rd |only spdesign-0.0.8/spdesign/man/generate_design.Rd | 8 spdesign-0.0.8/spdesign/man/rsc.Rd | 13 spdesign-0.0.8/spdesign/man/swap.Rd | 5 spdesign-0.0.8/spdesign/tests/testthat/test-design.R | 62 +++ spdesign-0.0.8/spdesign/tests/testthat/test-methods.R |only spdesign-0.0.8/spdesign/tests/testthat/test-random.R | 5 spdesign-0.0.8/spdesign/tests/testthat/test-rsc.R |only spdesign-0.0.8/spdesign/tests/testthat/test-xj.R | 16 spdesign-0.0.8/spdesign/vignettes/syntax.Rmd | 13 24 files changed, 390 insertions(+), 185 deletions(-)
Title: Estimate Inverse Probability Weights
Description: Functions to estimate the probability to receive the observed treatment, based on
individual characteristics. The inverse of these probabilities can be used as weights when
estimating causal effects from observational data via marginal structural models. Both point
treatment situations and longitudinal studies can be analysed. The same functions can be used to
correct for informative censoring.
Author: Hung Thai Tran [aut, cre],
Willem M. van der Wal [aut],
Ronald B. Geskus [aut]
Maintainer: Hung Thai Tran <hungtt@oucru.org>
Diff between ipw versions 1.3.0 dated 2026-01-27 and 1.3.1 dated 2026-10-30
DESCRIPTION | 9 LICENSE | 4 MD5 | 52 +- NAMESPACE | 26 - NEWS.md | 20 R/basdat.R | 78 +-- R/haartdat.R | 96 ++-- R/healthdat.R | 84 ++-- R/ipwplot.R | 112 +++-- R/ipwpoint.R | 468 ++++++++++++---------- R/ipwtm.R | 833 ++++++++++++++++++++++------------------ R/timedat.R | 104 ++-- R/tstartfun.R | 123 +++-- build/partial.rdb |binary man/basdat.Rd | 92 ++-- man/haartdat.Rd | 106 ++--- man/healthdat.Rd | 92 ++-- man/ipwplot.Rd | 111 ++--- man/ipwpoint.Rd | 241 +++++------ man/ipwtm.Rd | 522 +++++++++++-------------- man/timedat.Rd | 112 ++--- man/tstartfun.Rd | 90 +--- tests/testthat.R | 24 - tests/testthat/test-ipwplot.R | 71 ++- tests/testthat/test-ipwpoint.R | 158 ++++++- tests/testthat/test-ipwtm.R | 136 ++++-- tests/testthat/test-tstartfun.R | 78 ++- 27 files changed, 2070 insertions(+), 1772 deletions(-)
Title: Data Science Infrastructure for Global Health
Description: Supports global health data analysis, including a
publication-ready 'ggplot2' theme, a 'flextable' defaults helper,
a thin pie chart wrapper, built-in regional country-code datasets
with a WHO region lookup helper, a geometric mean function for
indicator aggregation, an average annual rate of reduction function
for indicator progress tracking, direct age standardization against
the bundled WHO 2026 Standard Population, period life-table
construction, a snapshot helper for reproducible data pulls, and
convenience clients for the World Health Organization Global Health
Observatory (GHO) through its legacy OData API
<https://www.who.int/data/gho/info/gho-odata-api>
or the public WHO xMart OData API
<https://xmart-api-public.who.int/DATA_>, Global Health Estimates (GHE)
through WHO xMart, and
the United Nations Sustainable Development Goals (SDG) API
<https://unstats.un.org/SDGAPI/swagger/>.
Author: Shanlong Ding [aut, cre]
Maintainer: Shanlong Ding <dings@who.int>
Diff between DSIR versions 0.11.0 dated 2026-10-12 and 0.13.0 dated 2026-10-30
DSIR-0.11.0/DSIR/man/figures/logo.jpg |only DSIR-0.13.0/DSIR/DESCRIPTION | 17 DSIR-0.13.0/DSIR/MD5 | 174 DSIR-0.13.0/DSIR/NAMESPACE | 94 DSIR-0.13.0/DSIR/NEWS.md | 1132 +++--- DSIR-0.13.0/DSIR/R/DSIR-package.R | 71 DSIR-0.13.0/DSIR/R/age_standardize.R | 326 - DSIR-0.13.0/DSIR/R/bind_indicators.R | 134 DSIR-0.13.0/DSIR/R/clean_metadata.R | 146 DSIR-0.13.0/DSIR/R/clean_schema.R | 126 DSIR-0.13.0/DSIR/R/compare_snapshots.R |only DSIR-0.13.0/DSIR/R/data.R | 432 +- DSIR-0.13.0/DSIR/R/data_snapshot.R |only DSIR-0.13.0/DSIR/R/flextable_defaults.R | 18 DSIR-0.13.0/DSIR/R/geomean.R | 210 - DSIR-0.13.0/DSIR/R/ggpie.R | 150 DSIR-0.13.0/DSIR/R/ghe.R | 738 ++-- DSIR-0.13.0/DSIR/R/gho.R | 888 ++--- DSIR-0.13.0/DSIR/R/http.R | 36 DSIR-0.13.0/DSIR/R/last_updated.R |only DSIR-0.13.0/DSIR/R/scale_dsi_col.R | 98 DSIR-0.13.0/DSIR/R/sdg.R | 846 ++-- DSIR-0.13.0/DSIR/R/theme_dsi.R | 512 +- DSIR-0.13.0/DSIR/R/who_auto.R |only DSIR-0.13.0/DSIR/R/who_backend.R | 398 +- DSIR-0.13.0/DSIR/R/who_gho.R | 994 ++--- DSIR-0.13.0/DSIR/R/who_legacy.R | 502 +- DSIR-0.13.0/DSIR/README.md | 1225 +++--- DSIR-0.13.0/DSIR/build/vignette.rds |binary DSIR-0.13.0/DSIR/demo/theme_demo.R | 69 DSIR-0.13.0/DSIR/inst/CITATION | 34 DSIR-0.13.0/DSIR/inst/WORDLIST | 102 DSIR-0.13.0/DSIR/inst/doc/DSIR.R | 456 +- DSIR-0.13.0/DSIR/inst/doc/DSIR.Rmd | 1118 +++--- DSIR-0.13.0/DSIR/inst/doc/DSIR.html | 1756 +++++----- DSIR-0.13.0/DSIR/inst/doc/data-snapshots.R |only DSIR-0.13.0/DSIR/inst/doc/data-snapshots.Rmd |only DSIR-0.13.0/DSIR/inst/doc/data-snapshots.html |only DSIR-0.13.0/DSIR/inst/doc/ghe-xmart.R | 106 DSIR-0.13.0/DSIR/inst/doc/ghe-xmart.Rmd | 251 - DSIR-0.13.0/DSIR/inst/doc/ghe-xmart.html | 1028 ++--- DSIR-0.13.0/DSIR/inst/doc/visualizing-indicators.R | 304 - DSIR-0.13.0/DSIR/inst/doc/visualizing-indicators.html | 1166 +++--- DSIR-0.13.0/DSIR/inst/extdata |only DSIR-0.13.0/DSIR/man/DSIR-package.Rd | 99 DSIR-0.13.0/DSIR/man/age_standardize.Rd | 206 - DSIR-0.13.0/DSIR/man/bind_indicators.Rd | 106 DSIR-0.13.0/DSIR/man/compare_snapshots.Rd |only DSIR-0.13.0/DSIR/man/data_snapshot.Rd |only DSIR-0.13.0/DSIR/man/dsi_flextable_defaults.Rd | 11 DSIR-0.13.0/DSIR/man/figures/logo.png |only DSIR-0.13.0/DSIR/man/ggpie.Rd | 114 DSIR-0.13.0/DSIR/man/ghe_causes.Rd | 64 DSIR-0.13.0/DSIR/man/ghe_clean.Rd | 60 DSIR-0.13.0/DSIR/man/ghe_coverage.Rd | 88 DSIR-0.13.0/DSIR/man/ghe_data.Rd | 144 DSIR-0.13.0/DSIR/man/ghe_dimensions.Rd | 64 DSIR-0.13.0/DSIR/man/gho_clean.Rd | 195 - DSIR-0.13.0/DSIR/man/gho_count.Rd | 163 DSIR-0.13.0/DSIR/man/gho_coverage.Rd | 185 - DSIR-0.13.0/DSIR/man/gho_data.Rd | 231 - DSIR-0.13.0/DSIR/man/gho_dimensions.Rd | 104 DSIR-0.13.0/DSIR/man/gho_has_data.Rd | 175 DSIR-0.13.0/DSIR/man/gho_indicators.Rd | 131 DSIR-0.13.0/DSIR/man/gho_last_updated.Rd |only DSIR-0.13.0/DSIR/man/sdg_last_updated.Rd |only DSIR-0.13.0/DSIR/man/who_std_pop.Rd | 100 DSIR-0.13.0/DSIR/tests/testthat/helper-data-snapshot.R |only DSIR-0.13.0/DSIR/tests/testthat/helper-gho-cache.R | 28 DSIR-0.13.0/DSIR/tests/testthat/helper-who-mock.R | 8 DSIR-0.13.0/DSIR/tests/testthat/test-age_standardize.R | 268 - DSIR-0.13.0/DSIR/tests/testthat/test-api-health.R |only DSIR-0.13.0/DSIR/tests/testthat/test-clean.R | 750 ++-- DSIR-0.13.0/DSIR/tests/testthat/test-compare-snapshots.R |only DSIR-0.13.0/DSIR/tests/testthat/test-data-snapshot.R |only DSIR-0.13.0/DSIR/tests/testthat/test-flextable_defaults.R | 35 DSIR-0.13.0/DSIR/tests/testthat/test-geomean.R | 124 DSIR-0.13.0/DSIR/tests/testthat/test-ghe.R | 194 - DSIR-0.13.0/DSIR/tests/testthat/test-gho-auto.R |only DSIR-0.13.0/DSIR/tests/testthat/test-gho-availability.R | 214 - DSIR-0.13.0/DSIR/tests/testthat/test-gho-backend.R | 6 DSIR-0.13.0/DSIR/tests/testthat/test-gho-bundled-catalog.R |only DSIR-0.13.0/DSIR/tests/testthat/test-gho-catalog-cache.R | 153 DSIR-0.13.0/DSIR/tests/testthat/test-gho-dimensions.R | 226 - DSIR-0.13.0/DSIR/tests/testthat/test-gho-get-mock.R | 458 +- DSIR-0.13.0/DSIR/tests/testthat/test-gho.R | 200 - DSIR-0.13.0/DSIR/tests/testthat/test-last-updated-diagnostics.R |only DSIR-0.13.0/DSIR/tests/testthat/test-last-updated-live.R |only DSIR-0.13.0/DSIR/tests/testthat/test-last-updated.R |only DSIR-0.13.0/DSIR/tests/testthat/test-sdg-area-resolution.R | 146 DSIR-0.13.0/DSIR/tests/testthat/test-sdg-coverage.R | 262 - DSIR-0.13.0/DSIR/tests/testthat/test-sdg-indicators.R | 200 - DSIR-0.13.0/DSIR/tests/testthat/test-sdg-year-filter.R | 140 DSIR-0.13.0/DSIR/tests/testthat/test-theme-dsi-facet.R | 80 DSIR-0.13.0/DSIR/tests/testthat/test-theme_dsi.R | 86 DSIR-0.13.0/DSIR/tests/testthat/test-who-xmart.R | 550 +-- DSIR-0.13.0/DSIR/tests/testthat/test-who_std_pop.R | 60 DSIR-0.13.0/DSIR/vignettes/DSIR.Rmd | 1118 +++--- DSIR-0.13.0/DSIR/vignettes/data-snapshots.Rmd |only DSIR-0.13.0/DSIR/vignettes/ghe-xmart.Rmd | 251 - 100 files changed, 12109 insertions(+), 11345 deletions(-)
Title: Word and Document Vector Models
Description: Create dense vector representation of words and documents using 'quanteda'. Implements Word2vec (Mikolov et al., 2013) <doi:10.48550/arXiv.1310.4546>, Doc2vec (Le & Mikolov, 2014) <doi:10.48550/arXiv.1405.4053> and Latent Semantic Analysis (Deerwester et al., 1990) <doi:10.1002/(SICI)1097-4571(199009)41:6%3C391::AID-ASI1%3E3.0.CO;2-9>.
Author: Kohei Watanabe [aut, cre, cph] ,
Jan Wijffels [aut] ,
BNOSAC [cph] ,
Max Fomichev [ctb, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between wordvector versions 0.6.5 dated 2026-10-08 and 0.6.6 dated 2026-10-30
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 7 +++++++ R/as.doc2vec.R | 7 ++++++- R/utils.R | 9 +++++++-- src/word2vec/word2vec.hpp | 6 +++--- src/wordvector.cpp | 9 ++++----- 7 files changed, 36 insertions(+), 20 deletions(-)
Title: WHO Cardiovascular Disease Risk Calculator
Description: Implements the 2019 World Health Organization (WHO) cardiovascular
disease (CVD) risk prediction models, as described in Kaptoge et al. (2019)
<doi:10.1016/S2214-109X(19)30318-3>. Provides two validated models for
estimating 10-year risk of fatal and non-fatal cardiovascular events
(myocardial infarction and stroke): a laboratory-based model using age, sex,
systolic blood pressure, total cholesterol, smoking status, and diabetes
history; and a non-laboratory-based model substituting body mass index (BMI)
for cholesterol and diabetes, suitable for resource-limited settings. Risk
estimates are recalibrated to 21 Global Burden of Disease regions (or to
individual countries) using the authors' recalibration parameters, fitted
to Global Burden of Disease 2017 incidence rates and Non-Communicable
Disease Risk Factor Collaboration risk factor levels. Functions are fully
vectorized for efficient batch calculations and support automatic
country-to-region mapping via ISO 3166-1 alpha-3 cou [...truncated...]
Author: WHO CVD Risk Chart Working Group [aut],
Andrea Pedot [cre, ctb]
Maintainer: Andrea Pedot <andrea.pedot@unimi.it>
Diff between WHORiskCalculator versions 1.0.0 dated 2026-04-07 and 1.1.0 dated 2026-10-30
DESCRIPTION | 22 LICENSE | 4 MD5 | 34 - NAMESPACE | 14 NEWS.md | 46 + R/calculate_who_risk.R | 807 +++++++++++++------------ R/sysdata.rda |only R/utils.R | 1250 +++++++++++++++------------------------ README.md | 429 +++++++------ inst/WORDLIST | 57 + man/WHORiskCalculator-package.Rd | 53 - man/calculate_who_risk.Rd | 294 +++++---- man/calculate_who_risk_nonlab.Rd | 242 ++++--- man/country_to_region.Rd | 42 - man/get_country_codes.Rd | 58 - man/get_regions.Rd | 38 - tests/spelling.R | 6 tests/testthat |only tests/testthat.R |only 19 files changed, 1735 insertions(+), 1661 deletions(-)
More information about WHORiskCalculator at CRAN
Permanent link
Title: Spatially Balanced Sampling Algorithms
Description: Encapsulates a number of spatially balanced sampling algorithms,
namely, Balanced Acceptance Sampling (equal, unequal, seed point, panels), Halton frames
(for discretizing a continuous resource), Halton Iterative Partitioning (equal probability),
Simple Random Sampling, Dynamic Assignment Sampling and Doubly balanced Dynamic Assignment Sampling.
Robertson, B. L., Brown, J. A., McDonald, T. and Jaksons, P. (2013) <doi:10.1111/biom.12059>.
Robertson, B. L., McDonald, T., Price, C. J. and Brown, J. A. (2017) <doi:10.1016/j.spl.2017.05.004>.
Robertson, B. L., McDonald, T., Price, C. J. and Brown, J. A. (2018) <doi:10.1007/s10651-018-0406-6>.
Robertson, B. L., van Dam-Bates, P. and Gansell, O. (2021a) <doi:10.1007/s10651-020-00481-1>.
Robertson, B. L., Davies, P., Gansell, O., van Dam-Bates, P., McDonald, T. (2025) <doi:10.1111/anzs.12435>.
Robertson, B.L., Price, C.J., Reale, M., Davies, P. (2026) <doi:10.1093/biomtc/ujag011>.
Robertson, B.L., Price, C.J [...truncated...]
Author: Phil Davies [aut, cre],
Blair Robertson [aut],
Paul van Dam-Bates [aut],
Oliver Gansell [aut]
Maintainer: Phil Davies <philip.davies@canterbury.ac.nz>
Diff between spbal versions 1.0.1 dated 2025-03-28 and 1.1.0 dated 2026-10-30
DESCRIPTION | 20 +++-- MD5 | 43 +++++++++--- NAMESPACE | 6 + NEWS.md | 4 + R/DAS.R |only R/RcppExports.R | 106 ++++++++++++++++++++++++++++++ R/doubleDAS.R |only README.md | 2 build/vignette.rds |binary inst/doc/DAS-doubleDAS-User-Guide-v1.R |only inst/doc/DAS-doubleDAS-User-Guide-v1.Rmd |only inst/doc/DAS-doubleDAS-User-Guide-v1.html |only inst/doc/spbal.Rmd | 18 ++++- inst/doc/spbal.html | 51 +++++++++----- man/DAS.Rd |only man/DoubleAssignmentProblem_cpp.Rd |only man/LinearAssignmentProblem_cpp.Rd |only man/SBMoranIvec.Rd |only man/arma_dist_al.Rd |only man/doubleDAS.Rd |only man/doubleDAS_balance_row.Rd |only man/native_lapjv.Rd |only src/LinearAssignmentProblem_cpp.cpp |only src/Makevars |only src/Makevars.win |only src/RcppExports.cpp | 57 ++++++++++++++++ src/arma_dist_al.cpp |only tests/testthat/test-spbal-DAS-1.R |only tests/testthat/test-spbal-DAS-2.R |only tests/testthat/test-spbal-DAS-3.R |only tests/testthat/test-spbal-DAS-4.R |only tests/testthat/test-spbal-DAS-5.R |only vignettes/DAS-doubleDAS-User-Guide-v1.Rmd |only vignettes/spbal.Rmd | 18 ++++- 34 files changed, 281 insertions(+), 44 deletions(-)
Title: Presidential Election Data of "Sri Lanka" from 1982 to 2024
Description: Provides Sri Lankan presidential election results for
1982, 1988, 1994, 1999, 2005, 2010, 2015, 2019 and 2024. The datasets
contain candidate vote counts, reported percentages, and summary
statistics for polling divisions and district results, including
postal and displaced votes where available. Results were extracted
from PDF documents and prepared in a consistent tabular format.
Author: Amalan Mahendran [aut, cre]
Maintainer: Amalan Mahendran <amalan0595@gmail.com>
Diff between SLPresElection versions 1.1.0 dated 2026-10-14 and 2.0.0 dated 2026-10-30
DESCRIPTION | 10 - MD5 | 19 +- R/Data.R | 72 +++++++++++ R/zzz.R | 2 build/vignette.rds |binary data/Election2024.rda |only inst/WORDLIST | 26 +++ inst/doc/election-2024.Rmd |only inst/doc/election-2024.html |only man/Election2024.Rd |only man/figures/Registered_and_Polled_Votes_over_the_years-1.png |binary man/figures/Rejected_Votes_over_the_years-1.png |binary vignettes/election-2024.Rmd |only 13 files changed, 116 insertions(+), 13 deletions(-)
More information about SLPresElection at CRAN
Permanent link
Title: Structural Modeling for Multiple Latent Class Variables
Description: Provides comprehensive tools for the implementation of
Structural Latent Class Models (SLCM), including Latent Transition
Analysis (LTA; Linda M. Collins and Stephanie T. Lanza, 2009)
<doi:10.1002/9780470567333>, Latent Class Profile Analysis (LCPA; Hwan
Chung et al., 2010) <doi:10.1111/j.1467-985x.2010.00674.x>, and Joint
Latent Class Analysis (JLCA; Saebom Jeon et al., 2017)
<doi:10.1080/10705511.2017.1340844>, and any other extended models
involving multiple latent class variables. Details on the methodology
and implementation are given in Kim and Chung (2026)
<doi:10.18637/jss.v117.i08>.
Author: Youngsun Kim [aut, cre] ,
Hwan Chung [aut]
Maintainer: Youngsun Kim <yskstat@gmail.com>
Diff between slca versions 1.4.2 dated 2026-10-27 and 1.4.3 dated 2026-10-30
DESCRIPTION | 56 ++++++++++++++++++++++++++-------------------------- MD5 | 15 +++++++------ NEWS.md | 6 +++++ R/slca-package.R | 3 -- R/slca.R | 1 build |only inst/CITATION | 32 ++++++++++------------------- man/slca-package.Rd | 3 ++ man/slca.Rd | 3 ++ 9 files changed, 62 insertions(+), 57 deletions(-)
Title: Tools for Joint Sentiment and Topic Analysis of Textual Data
Description: A framework that joins topic modeling and sentiment analysis of
textual data. The package implements a fast Gibbs sampling estimation of
Latent Dirichlet Allocation (Griffiths and Steyvers (2004)
<doi:10.1073/pnas.0307752101>) and Joint Sentiment/Topic Model (Lin, He,
Everson and Ruger (2012) <doi:10.1109/TKDE.2011.48>). It offers a variety of
helpers and visualizations to analyze the result of topic modeling. The
framework also allows enriching topic models with dates and externally
computed sentiment measures. A flexible aggregation scheme enables the
creation of time series of sentiment or topical proportions from the enriched
topic models. Moreover, a novel method jointly aggregates topic proportions
and sentiment measures to derive time series of topical sentiment.
Author: Olivier Delmarcelle [aut, cre] ,
Samuel Borms [ctb] ,
Chenghua Lin [cph] ,
Yulan He [cph] ,
Jose Bernardo [cph] ,
David Robinson [cph] ),
Julia Silge [cph] , ORCID:
<https://orcid.org/0000-0002-3671-836X>)
Maintainer: Olivier Delmarcelle <delmarcelle.olivier@gmail.com>
Diff between sentopics versions 1.0.1 dated 2026-09-10 and 1.1.0 dated 2026-10-30
DESCRIPTION | 6 MD5 | 110 ++--- NEWS.md | 96 ++++ R/conversions.R | 527 ++++++++++++++++--------- R/functions.R | 11 R/merging.R | 12 R/methods.R | 120 ++++- R/models.R | 51 ++ R/others.R | 58 ++ R/sentopics.R | 56 ++ R/timeSeries.R | 138 ++++++ R/utils.R | 38 + README.md | 26 - build/partial.rdb |binary build/vignette.rds |binary data/ECB_press_conferences.rda |binary data/ECB_press_conferences_tokens.rda |binary inst/doc/Basic_usage.Rmd | 4 inst/doc/Basic_usage.html | 176 ++++---- inst/doc/Topical_time_series.html | 150 +++---- man/ECB_press_conferences.Rd | 31 + man/ECB_press_conferences_tokens.Rd | 19 man/JST.Rd | 15 man/LDA.Rd | 7 man/LoughranMcDonald.Rd | 8 man/as.LDA.Rd | 33 + man/chains_scores.Rd | 2 man/compute_PicaultRenault_scores.Rd | 20 man/fit.sentopicsmodel.Rd | 14 man/get_ECB_press_conferences.Rd | 15 man/merge_topics.Rd | 12 man/proportion_topics.Rd | 4 man/rJST.Rd | 15 man/sentiment_breakdown.Rd | 4 man/sentiment_series.Rd | 16 man/sentiment_topics.Rd | 9 man/sentopics-conversions.Rd | 5 man/sentopics_sentiment.Rd | 19 man/sentopicsmodel.Rd | 4 man/top_words.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/helper-ecb-fixtures.R |only tests/testthat/test-JST.R | 1 tests/testthat/test-PicaultRenault.R |only tests/testthat/test-chain-scores.R |only tests/testthat/test-chain-sentiment-cache.R |only tests/testthat/test-chain-shared-core.R |only tests/testthat/test-conversion-counts.R |only tests/testthat/test-conversions.R | 18 tests/testthat/test-ecb-corpus.R |only tests/testthat/test-internal-lda-conversion.R |only tests/testthat/test-lda-rjst-token-alignment.R |only tests/testthat/test-merged-sentiment.R |only tests/testthat/test-missing-sentiment.R |only tests/testthat/test-model-input-validation.R |only tests/testthat/test-others.R | 61 ++ tests/testthat/test-rJST.R | 1 tests/testthat/test-sampling-cache.R |only tests/testthat/test-sentiment-cache.R |only tests/testthat/test-timeSeries.R | 30 - tests/testthat/test-top-words.R |only tests/testthat/test-topical-sentiment.R |only tests/testthat/test-utils.R | 4 vignettes/Basic_usage.Rmd | 4 64 files changed, 1434 insertions(+), 518 deletions(-)
Title: An MCMC Sampler Using the t-Walk Algorithm
Description: Implements the t-walk algorithm, a general-purpose, self-adjusting
Markov Chain Monte Carlo (MCMC) sampler for continuous distributions as
described by Christen & Fox (2010) <doi:10.1214/10-BA603>. The t-walk requires
no tuning and is robust for a wide range of target distributions, including
high-dimensional and multimodal problems. The sampler is implemented in
C++ and validated against a pure R reference implementation of the
published algorithm. The package supports reproducible parallel chains,
continuation of runs, single transitions for hybrid samplers, and
convergence diagnostics following Vehtari et al. (2021)
<doi:10.1214/20-BA1221>.
Author: Rodrigo Fonseca Villa [aut, cre]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>
Diff between Rtwalk versions 2.1.0 dated 2026-08-28 and 2.2.0 dated 2026-10-30
DESCRIPTION | 26 MD5 | 101 +- NAMESPACE | 27 NEWS.md | 85 + R/RcppExports.R |only R/Rtwalk-package.R |only R/coda-methods.R |only R/diagnostics.R | 290 +++++- R/posterior-methods.R |only R/s3-methods.R | 306 ++++++ R/twalk_engine.R | 643 ++++++++------ R/twalk_main.R | 1474 +++++++++++++++++++++++---------- README.md | 98 +- build/partial.rdb |only build/vignette.rds |binary inst/WORDLIST |only inst/doc/reproducing_christen_fox.Rmd |only inst/doc/reproducing_christen_fox.html |only inst/doc/sampler_comparison.Rmd |only inst/doc/sampler_comparison.html |only inst/doc/validation_study.R | 180 +--- inst/doc/validation_study.Rmd | 330 ++++--- inst/doc/validation_study.html | 301 ++++-- man/Rtwalk-package.Rd |only man/calculate_diagnostics.Rd | 38 man/coda-methods.Rd |only man/kernel_blow.Rd | 6 man/kernel_hop.Rd | 6 man/kernel_traverse.Rd | 6 man/kernel_walk.Rd | 8 man/plot.twalk.Rd |only man/posterior-methods.Rd |only man/simulate_beta.Rd | 2 man/twalk-methods.Rd | 34 man/twalk.Rd | 137 ++- man/twalk_continue.Rd |only man/twalk_control.Rd |only man/twalk_move.Rd | 40 man/twalk_step.Rd |only man/visualize_results.Rd | 4 src |only tests/testthat/_problems |only tests/testthat/test-coda-methods.R |only tests/testthat/test-diagnostics.R | 79 + tests/testthat/test-edge-cases.R |only tests/testthat/test-engine.R |only tests/testthat/test-features.R |only tests/testthat/test-kernels.R | 295 +++--- tests/testthat/test-methods.R | 181 ++-- tests/testthat/test-twalk.R | 138 ++- vignettes/figures |only vignettes/reproducing_christen_fox.Rmd |only vignettes/sampler_comparison.Rmd |only vignettes/validation_study.Rmd | 330 ++++--- 54 files changed, 3599 insertions(+), 1566 deletions(-)
Title: Risk Metrics to Evaluating R Packages
Description: Facilities for assessing R packages against a number of metrics to
help quantify their robustness.
Author: R Validation Hub [aut],
Doug Kelkhoff [aut],
Marly Gotti [aut],
Eli Miller [cre, aut],
Kevin K [aut],
Yilong Zhang [aut],
Eric Milliman [aut],
Juliane Manitz [aut],
Mark Padgham [ctb],
PSI special interest group Application and Implementation of
Meth [...truncated...]
Maintainer: Eli Miller <elimillera@gmail.com>
Diff between riskmetric versions 0.2.7 dated 2026-04-01 and 0.2.8 dated 2026-10-30
DESCRIPTION | 10 ++++---- MD5 | 10 ++++---- NEWS.md | 4 +++ build/vignette.rds |binary inst/doc/extending-riskmetric.html | 30 ++++++++++++------------- inst/doc/riskmetric.html | 44 ++++++++++++++++++------------------- 6 files changed, 51 insertions(+), 47 deletions(-)
Title: Nonlinear and Penalized Quantile Regression Coefficients
Modeling
Description: Penalized and nonlinear parametric modeling of quantile
regression coefficient functions. The penalized integrated loss
minimization estimator (lasso and group lasso penalties) of Sottile,
Frumento, Chiodi and Bottai (2020) <doi:10.1177/1471082X19825523>
performs covariate selection using the information on all quantiles
simultaneously. Nonlinear parametric quantile models, in which the
conditional quantile function can be a nonlinear function of the
parameters, of the covariates or both, are estimated by integrated
loss minimization as in Bottai and Cilluffo (2020)
<doi:10.1177/0962280220941159>. Both approaches extend the quantile
regression coefficients modeling framework of Frumento and Bottai
(2016) <doi:10.1111/biom.12410> implemented in 'qrcm'.
Author: Gianluca Sottile [aut, cre] ,
Paolo Frumento [aut, cph]
Maintainer: Gianluca Sottile <gianluca.sottile@unipa.it>
Diff between qrcmNP versions 0.2.2 dated 2025-07-25 and 1.0.0 dated 2026-10-30
qrcmNP-0.2.2/qrcmNP/R/qrcmNL.R |only qrcmNP-0.2.2/qrcmNP/R/qrcmPen.R |only qrcmNP-0.2.2/qrcmNP/man/qrcmNP-internal.Rd |only qrcmNP-0.2.2/qrcmNP/man/testfit.niqr.Rd |only qrcmNP-1.0.0/qrcmNP/DESCRIPTION | 48 ++- qrcmNP-1.0.0/qrcmNP/MD5 | 66 +++- qrcmNP-1.0.0/qrcmNP/NAMESPACE | 97 ++++--- qrcmNP-1.0.0/qrcmNP/NEWS.md | 114 +++++++- qrcmNP-1.0.0/qrcmNP/R/engine-basis.R |only qrcmNP-1.0.0/qrcmNP/R/engine-check.R |only qrcmNP-1.0.0/qrcmNP/R/engine-ee.R |only qrcmNP-1.0.0/qrcmNP/R/niqr-engine.R |only qrcmNP-1.0.0/qrcmNP/R/niqr-methods.R |only qrcmNP-1.0.0/qrcmNP/R/niqr.R |only qrcmNP-1.0.0/qrcmNP/R/piqr-legacy.R |only qrcmNP-1.0.0/qrcmNP/R/piqr-methods.R |only qrcmNP-1.0.0/qrcmNP/R/piqr-solver.R |only qrcmNP-1.0.0/qrcmNP/R/piqr.R |only qrcmNP-1.0.0/qrcmNP/R/qrcmNP-package.R |only qrcmNP-1.0.0/qrcmNP/README.md |only qrcmNP-1.0.0/qrcmNP/build |only qrcmNP-1.0.0/qrcmNP/inst/CITATION | 19 + qrcmNP-1.0.0/qrcmNP/inst/doc |only qrcmNP-1.0.0/qrcmNP/man/coef.piqr.Rd |only qrcmNP-1.0.0/qrcmNP/man/cv_piqr.Rd |only qrcmNP-1.0.0/qrcmNP/man/gof.niqr.Rd |only qrcmNP-1.0.0/qrcmNP/man/gof.piqr.Rd | 130 ++++----- qrcmNP-1.0.0/qrcmNP/man/niqr.Rd | 255 ++++++++++-------- qrcmNP-1.0.0/qrcmNP/man/niqr.control.Rd |only qrcmNP-1.0.0/qrcmNP/man/piqr.Rd | 396 +++++++++++++---------------- qrcmNP-1.0.0/qrcmNP/man/plot.niqr.Rd | 76 ++--- qrcmNP-1.0.0/qrcmNP/man/plot.piqr.Rd | 119 +++----- qrcmNP-1.0.0/qrcmNP/man/predict.niqr.Rd | 107 ++----- qrcmNP-1.0.0/qrcmNP/man/predict.piqr.Rd | 135 +++------ qrcmNP-1.0.0/qrcmNP/man/qrcmNP-defunct.Rd |only qrcmNP-1.0.0/qrcmNP/man/qrcmNP-package.Rd | 107 +++---- qrcmNP-1.0.0/qrcmNP/man/reexports.Rd |only qrcmNP-1.0.0/qrcmNP/man/refit_piqr.Rd |only qrcmNP-1.0.0/qrcmNP/man/summary.niqr.Rd | 62 +--- qrcmNP-1.0.0/qrcmNP/man/summary.piqr.Rd | 101 +++---- qrcmNP-1.0.0/qrcmNP/man/test.fit.niqr.Rd |only qrcmNP-1.0.0/qrcmNP/tests |only qrcmNP-1.0.0/qrcmNP/vignettes |only 43 files changed, 938 insertions(+), 894 deletions(-)
Title: Two- And Three-Way Dynamic Panel Threshold Regression Model for
Change Point Detection
Description: Estimation of two-way and three-way dynamic panel threshold regression models using the first-differenced instrumental-variable generalized method of moments (FD-IV-GMM) estimator. The implementation builds on Seo and Shin (2016) <doi:10.1016/j.jeconom.2016.03.005> and Di Lascio and Perazzini (2026) <doi:10.1007/s10260-026-00842-3>. The models accommodate time-varying exogenous and endogenous regressors and allow the lagged dependent variable to serve as the threshold variable. The package includes a bootstrap-based test for threshold effects, a procedure for identifying change points in individual time series, functions for simulating two-way and three-way panel data with regime changes, and tools for evaluating estimator performance through bias and root mean squared error measures.
Author: Selene Perazzini [aut],
F. Marta L. Di Lascio [aut, cre]
Maintainer: F. Marta L. Di Lascio <marta.dilascio@unibz.it>
Diff between PanelTM versions 1.1 dated 2026-02-04 and 1.2 dated 2026-10-30
ChangeLog | 5 DESCRIPTION | 8 MD5 | 34 - R/Internal_functions.R | 987 +++++++++++++++++++++++++------------------------ R/cpoint.R | 323 +++++++++------- R/perfm.R | 107 ++--- R/ptm2.R | 746 +++++++++++++++++++++---------------- R/ptm3.R | 613 ++++++++++++++++++------------ R/simptm.R | 329 ++++++++-------- man/cpoint-class.Rd | 2 man/cpoint.Rd | 19 man/perfm-class.Rd | 4 man/perfm.Rd | 2 man/ptm2.Rd | 48 +- man/ptm3-class.Rd | 2 man/ptm3.Rd | 26 + man/simptm-class.Rd | 2 man/simptm.Rd | 29 + 18 files changed, 1858 insertions(+), 1428 deletions(-)
Title: Lightweight Toolkit for Messaging, Concurrency and the Web
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ.
A toolkit for messaging, concurrency and the web. High-performance
socket messaging over in-process, IPC, TCP, WebSocket and secure TLS
transports implements 'Scalability Protocols', a standard for common
communications patterns including publish/subscribe, request/reply and
survey. A threaded concurrency framework with intuitive 'aio' objects
that resolve automatically upon completion of asynchronous operations,
and synchronisation primitives that allow R to wait on events
signalled by concurrent threads. A unified HTTP server hosting REST
endpoints, WebSocket connections and streaming on a single port, with
a built-in HTTP client.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph],
Staysail Systems, Inc. [cph] ,
Capitar IT Group BV [cph] ,
The Mbed TLS Contributors [cph] ,
Pierre L'Ecuyer [cph] ,
sakura authors [cph] ,
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between nanonext versions 1.10.3 dated 2026-09-23 and 1.10.4 dated 2026-10-30
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 6 ++++++ README.md | 3 --- src/aio.c | 14 ++++++++++---- src/sync.c | 53 ++++++++++++++++++++++++++++++++++++++++++++++------- 6 files changed, 70 insertions(+), 22 deletions(-)
Title: Model-Robust Standardization in Cluster-Randomized Trials
Description: Implements model-robust standardization for cluster-randomized trials (CRTs). Provides functions that standardize user-specified regression models to estimate marginal treatment effects. The targets include the cluster-average and individual-average treatment effects, with utilities for variance estimation and example simulation datasets. Methods are described in Li, Tong, Fang, Cheng, Kahan, and Wang (2025) <doi:10.1002/sim.70270>. Inverse-cluster-size weighted outcome models are available for generalized estimating equations and linear or generalized linear mixed models. The outcome models can use common fitting weights for both estimands or inverse-cluster-size weights for the cluster-average effect and no weights for the individual-average effect. Inference retains the original standardization framework and paired cluster jackknife. Related cluster-size saturated models are described in the arXiv preprint by Lee, Harhay, and Li (2026) <doi:10.48550/arXiv.2608.28943>.
Author: Jiaqi Tong [aut],
Changjun Li [aut, cre],
Xi Fang [aut],
Chao Cheng [aut],
Kenneth M. Lee [aut],
Bingkai Wang [aut],
Fan Li [aut]
Maintainer: Changjun Li <changjun.li@yale.edu>
Diff between MRStdCRT versions 0.1.2 dated 2026-10-07 and 0.1.3 dated 2026-10-30
MRStdCRT-0.1.2/MRStdCRT/man/MRStdCRT_point.Rd |only MRStdCRT-0.1.3/MRStdCRT/DESCRIPTION | 15 MRStdCRT-0.1.3/MRStdCRT/MD5 | 33 - MRStdCRT-0.1.3/MRStdCRT/R/MRStdCRT_fit.R | 281 ++++++++++- MRStdCRT-0.1.3/MRStdCRT/R/MRStdCRT_point.R | 121 +++- MRStdCRT-0.1.3/MRStdCRT/R/estimand_specific.R |only MRStdCRT-0.1.3/MRStdCRT/R/log_inference.R |only MRStdCRT-0.1.3/MRStdCRT/R/weighted_mixed.R |only MRStdCRT-0.1.3/MRStdCRT/R/weighted_models.R |only MRStdCRT-0.1.3/MRStdCRT/README.md | 132 ++++- MRStdCRT-0.1.3/MRStdCRT/build/partial.rdb |only MRStdCRT-0.1.3/MRStdCRT/inst/doc/introduction.R | 133 +++++ MRStdCRT-0.1.3/MRStdCRT/inst/doc/introduction.Rmd | 511 ++++++++++++++++++-- MRStdCRT-0.1.3/MRStdCRT/inst/doc/introduction.html | 535 +++++++++++++++++++-- MRStdCRT-0.1.3/MRStdCRT/man/MRStdCRT_fit.Rd | 205 +++++++- MRStdCRT-0.1.3/MRStdCRT/man/summary.MRS_obj.Rd | 11 MRStdCRT-0.1.3/MRStdCRT/tests/estimand-specific.R |only MRStdCRT-0.1.3/MRStdCRT/tests/helpers |only MRStdCRT-0.1.3/MRStdCRT/tests/input-encoding.R |only MRStdCRT-0.1.3/MRStdCRT/tests/log-inference.R |only MRStdCRT-0.1.3/MRStdCRT/tests/regression.R | 2 MRStdCRT-0.1.3/MRStdCRT/tests/weighted-models.R |only MRStdCRT-0.1.3/MRStdCRT/vignettes/introduction.Rmd | 511 ++++++++++++++++++-- 23 files changed, 2299 insertions(+), 191 deletions(-)
Title: Tidyverse-Friendly Introductory Linear Regression
Description: Datasets and wrapper functions for tidyverse-friendly introductory linear regression, used in "Statistical Inference via Data Science: A ModernDive into R and the Tidyverse" available at <https://moderndive.com/>.
Author: Albert Y. Kim [aut, cre] ,
Chester Ismay [aut] ,
Andrew Bray [ctb] ,
Delaney Moran [ctb],
Evgeni Chasnovski [ctb] ,
Will Hopper [ctb] ,
Benjamin S. Baumer [ctb] ,
Marium Tapal [ctb] ,
Wayne Ndlovu [ctb],
Catherine Peppers [ctb],
Annah Mutaya [ctb],
A [...truncated...]
Maintainer: Albert Y. Kim <albert.ys.kim@gmail.com>
Diff between moderndive versions 0.8.0 dated 2026-08-04 and 0.8.1 dated 2026-10-30
DESCRIPTION | 6 - MD5 | 32 ++--- NEWS.md | 8 + R/datasets.R | 4 R/plot_3d_regression.R | 27 +++- R/view.R | 21 +++ inst/doc/moderndive.html | 4 man/View.Rd | 4 man/figures/interaction-and-parallel-slopes-model-1-1.png |binary man/figures/interaction-and-parallel-slopes-model-2-1.png |binary man/figures/residuals-1-1.png |binary man/figures/residuals-2-1.png |binary man/figures/unnamed-chunk-7-1.png |binary man/orig_pennies_sample.Rd | 2 man/pennies.Rd | 2 tests/testthat/test-view.R | 79 ++++++++++++++ vignettes/paper.html | 6 - 17 files changed, 152 insertions(+), 43 deletions(-)
Title: Clustering with Matrix Gaussian and Matrix Transformation
Mixture Models
Description: Provides matrix Gaussian mixture models, matrix transformation mixture models and their model-based clustering results. The parsimonious models of the mean matrices and variance covariance matrices are implemented with a total of 196 variations. For more information, please check: Xuwen Zhu, Shuchismita Sarkar, and Volodymyr Melnykov (2021), "MatTransMix: an R package for matrix model-based clustering and parsimonious mixture modeling", <doi:10.1007/s00357-021-09401-9>.
Author: Xuwen Zhu [aut, cre],
Volodymyr Melnykov [aut],
Shuchismita Sarkar [ctb],
Michael Hutt [ctb, cph],
Stephen Moshier [ctb, cph],
Rouben Rostamian [ctb, cph],
Carl Edward Rasmussen [ctb, cph],
Dianne Cook [ctb, cph]
Maintainer: Xuwen Zhu <xzhu20@ua.edu>
This is a re-admission after prior archival of version 0.1.18 dated 2025-01-29
Diff between MatTransMix versions 0.1.18 dated 2025-01-29 and 0.1.19 dated 2026-10-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 3 +++ src/array.h | 6 ++++++ 4 files changed, 16 insertions(+), 7 deletions(-)
Title: Shiny Application for Topic Modeling of Scientific Literature
Description: A 'shiny' application that guides users through an exploratory
review of scientific literature using Latent Dirichlet Allocation (LDA)
topic modeling. It imports bibliometric records exported from databases
such as 'Scopus' and 'Web of Science', performs text preprocessing,
helps select the number of topics, fits the final model, and visualizes
the results and the evolution of topics over time. The methodology is
described in De la Hoz-M et al. (2021) <doi:10.3390/math9141671>.
Author: Javier De La Hoz-M [aut, cre] ,
Maria Camila Samper Meza [aut] ,
Alexander Armando Bustamante Martinez [aut]
Maintainer: Javier De La Hoz-M <jdelahoz@unimagdalena.edu.co>
Diff between LDAShiny versions 1.0.0 dated 2026-06-08 and 1.1.0 dated 2026-10-30
LDAShiny-1.0.0/LDAShiny/inst/doc/LDAShiny-introduction.R |only LDAShiny-1.0.0/LDAShiny/inst/doc/LDAShiny-introduction.Rmd |only LDAShiny-1.0.0/LDAShiny/inst/doc/LDAShiny-introduction.html |only LDAShiny-1.0.0/LDAShiny/man/lda_themes.Rd |only LDAShiny-1.0.0/LDAShiny/man/mod_inference_server.Rd |only LDAShiny-1.0.0/LDAShiny/man/mod_inference_ui.Rd |only LDAShiny-1.0.0/LDAShiny/man/mod_preprocess_server.Rd |only LDAShiny-1.0.0/LDAShiny/man/mod_preprocess_ui.Rd |only LDAShiny-1.0.0/LDAShiny/man/mod_trend_server.Rd |only LDAShiny-1.0.0/LDAShiny/man/mod_trend_ui.Rd |only LDAShiny-1.0.0/LDAShiny/man/parse_wos.Rd |only LDAShiny-1.0.0/LDAShiny/man/standardize_scopus.Rd |only LDAShiny-1.0.0/LDAShiny/tests |only LDAShiny-1.0.0/LDAShiny/vignettes/LDAShiny-introduction.Rmd |only LDAShiny-1.1.0/LDAShiny/DESCRIPTION | 58 LDAShiny-1.1.0/LDAShiny/MD5 | 75 LDAShiny-1.1.0/LDAShiny/NAMESPACE | 315 - LDAShiny-1.1.0/LDAShiny/R/app_server.R | 33 LDAShiny-1.1.0/LDAShiny/R/app_ui.R | 92 LDAShiny-1.1.0/LDAShiny/R/globals.R | 55 LDAShiny-1.1.0/LDAShiny/R/golem_add_external_resources.R |only LDAShiny-1.1.0/LDAShiny/R/mod_about.R | 210 - LDAShiny-1.1.0/LDAShiny/R/mod_geo_analysis.R |only LDAShiny-1.1.0/LDAShiny/R/mod_import_bibliometrics.R | 1999 ++++++++-- LDAShiny-1.1.0/LDAShiny/R/mod_inference.R | 514 +- LDAShiny-1.1.0/LDAShiny/R/mod_lda_train.R | 1282 ++++-- LDAShiny-1.1.0/LDAShiny/R/mod_preprocess.R | 634 ++- LDAShiny-1.1.0/LDAShiny/R/mod_sensitivity.R |only LDAShiny-1.1.0/LDAShiny/R/mod_trend.R | 844 +++- LDAShiny-1.1.0/LDAShiny/R/run_LDAShiny.R | 10 LDAShiny-1.1.0/LDAShiny/R/utils-imports.R |only LDAShiny-1.1.0/LDAShiny/R/zzz.R | 6 LDAShiny-1.1.0/LDAShiny/build/vignette.rds |binary LDAShiny-1.1.0/LDAShiny/inst/app/www/Camila.png |only LDAShiny-1.1.0/LDAShiny/inst/app/www/author_photo.png |only LDAShiny-1.1.0/LDAShiny/inst/app/www/foto_alex.png |only LDAShiny-1.1.0/LDAShiny/inst/doc/Guia_LDAShiny.R |only LDAShiny-1.1.0/LDAShiny/inst/doc/Guia_LDAShiny.Rmd |only LDAShiny-1.1.0/LDAShiny/inst/doc/Guia_LDAShiny.html |only LDAShiny-1.1.0/LDAShiny/inst/doc/Guided_LDAShiny.R |only LDAShiny-1.1.0/LDAShiny/inst/doc/Guided_LDAShiny.Rmd |only LDAShiny-1.1.0/LDAShiny/inst/doc/Guided_LDAShiny.html |only LDAShiny-1.1.0/LDAShiny/man/mod_import_bibliometrics_server.Rd | 7 LDAShiny-1.1.0/LDAShiny/man/mod_import_bibliometrics_ui.Rd | 4 LDAShiny-1.1.0/LDAShiny/man/mod_inference.Rd |only LDAShiny-1.1.0/LDAShiny/man/mod_lda_train.Rd | 15 LDAShiny-1.1.0/LDAShiny/man/mod_preprocess.Rd |only LDAShiny-1.1.0/LDAShiny/man/mod_sensitivity.Rd |only LDAShiny-1.1.0/LDAShiny/man/mod_trend.Rd |only LDAShiny-1.1.0/LDAShiny/man/run_LDAShiny.Rd | 6 LDAShiny-1.1.0/LDAShiny/vignettes/Guia_LDAShiny.Rmd |only LDAShiny-1.1.0/LDAShiny/vignettes/Guided_LDAShiny.Rmd |only 52 files changed, 4415 insertions(+), 1744 deletions(-)
Title: Graphs and Covariance for Landscape Genetics
Description: Shared, dependency-light primitives for landscape-genetic network
methods: a lightweight deme/landscape graph (vertex coordinates and an undirected
edge list) with constructors from coordinates; genetic covariance and distance
from biallelic or multiallelic data (the normalized-dosage covariance of Yang
et al. (2010) <doi:10.1038/ng.608>, and the multivariate covariance of Dyer and
Nason (2004) <doi:10.1111/j.1365-294X.2004.02177.x> built by the Gower (1966)
<doi:10.1093/biomet/53.3-4.325> double-centering); pairwise F_ST by the
estimator of Bhatia et al. (2013) <doi:10.1101/gr.154831.113>; and
antisymmetric per-edge directional covariate builders (the gradient of a scalar
potential, and the projection of a vector flow field). Used by 'terradish'
(symmetric resistance).
Author: Bill Peterman [aut, cre, cph],
Nathaniel S. Pope [aut, cph]
Maintainer: Bill Peterman <peterman.73@osu.edu>
Diff between landgraph versions 0.0.3 dated 2026-09-25 and 0.0.4 dated 2026-10-30
DESCRIPTION | 21 MD5 | 45 - NEWS.md | 27 R/deme_graph.R | 27 R/edge_covariates.R | 14 R/genetic_covariance.R | 231 ++++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 18 inst/WORDLIST | 4 inst/doc/getting-started.R | 65 - inst/doc/getting-started.Rmd | 1065 +++++++++++++++---------------- inst/doc/getting-started.html | 419 +++++------- man/cov_from_biallelic.Rd | 34 man/cov_from_genetic_data.Rd | 94 +- man/deme_graph.Rd | 103 +- man/dist_from_biallelic.Rd | 83 +- man/dist_from_cov.Rd | 113 +-- man/edge_gradient.Rd | 70 +- man/fst_from_biallelic.Rd | 17 tests/testthat/test-deme-graph.R | 52 - tests/testthat/test-distance-fst.R |only tests/testthat/test-genetic-covariance.R | 27 vignettes/getting-started.Rmd | 1065 +++++++++++++++---------------- 24 files changed, 1875 insertions(+), 1719 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb] ,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between insight versions 1.6.1 dated 2026-10-28 and 1.7.0 dated 2026-10-30
DESCRIPTION | 8 MD5 | 80 +- NAMESPACE | 1 NEWS.md | 16 R/get_df.R | 8 R/get_predicted_ci.R | 50 + R/n_parameters.R | 6 inst/doc/display.html | 370 +++++----- tests/testthat/test-blavaan.R | 140 --- tests/testthat/test-brms.R | 7 tests/testthat/test-brms_autocor.R | 30 tests/testthat/test-brms_dpars.R | 171 ---- tests/testthat/test-brms_nonlinear.R | 66 - tests/testthat/test-export_table.R | 576 ++------------- tests/testthat/test-gamlss.R | 3 tests/testthat/test-get_data-changed_data.R | 88 -- tests/testthat/test-get_loglikelihood.R | 47 - tests/testthat/test-get_modelmatrix.R | 261 +------ tests/testthat/test-get_predicted-coxph.R | 8 tests/testthat/test-get_predicted-newdata.R | 131 +-- tests/testthat/test-get_varcov.R | 32 tests/testthat/test-get_variance.R | 41 - tests/testthat/test-glmmPQL.R | 37 - tests/testthat/test-glmmTMB.R | 1 tests/testthat/test-gls.R | 88 -- tests/testthat/test-is_converged.R | 5 tests/testthat/test-is_converged_cmdstanr.R | 134 --- tests/testthat/test-is_converged_coxph.R | 1032 +++------------------------- tests/testthat/test-is_converged_stan.R | 229 ------ tests/testthat/test-lavaan.R | 37 - tests/testthat/test-lm_robust.R | 39 + tests/testthat/test-lme.R | 494 ------------- tests/testthat/test-lmer.R | 40 - tests/testthat/test-merModList.R | 7 tests/testthat/test-mmrm.R | 1 tests/testthat/test-n_obs_brms.R | 14 tests/testthat/test-nlme.R | 195 ----- tests/testthat/test-null_model.R | 21 tests/testthat/test-rlmer.R | 1 tests/testthat/test-svylme.R | 2 tests/testthat/test-vglm.R | 18 41 files changed, 805 insertions(+), 3730 deletions(-)
Title: Geotechnical Engineering
Description: A compilation of functions for performing calculations and
creating plots that commonly arise in geotechnical engineering and soil
mechanics. The types of calculations that are currently included are:
(1) phase diagrams and index parameters, (2) grain-size distributions,
(3) plasticity, (4) soil classification, (5) compaction, (6) groundwater,
(7) subsurface stresses (geostatic and induced), (8) Mohr circle analyses,
(9) consolidation settlement and rate, (10) shear strength, (11) bearing
capacity, (12) lateral earth pressures, (13) slope stability, and (14)
subsurface explorations. Geotechnical engineering students, educators,
researchers, and practitioners will find this package useful.
Author: James Kaklamanos [aut],
Kyle Elmy [aut],
Irucka Embry [cre]
Maintainer: Irucka Embry <iembry@ecoccs.com>
This is a re-admission after prior archival of version 1.0 dated 2016-02-14
Diff between geotech versions 1.0 dated 2016-02-14 and 1.0.1 dated 2026-10-30
geotech-1.0.1/geotech/DESCRIPTION | 22 - geotech-1.0.1/geotech/MD5 | 111 ++++-- geotech-1.0.1/geotech/NAMESPACE | 79 ++++ geotech-1.0.1/geotech/NEWS.md |only geotech-1.0.1/geotech/R/GrainSize.R | 314 +++++++++++------- geotech-1.0.1/geotech/R/Groundwater.R | 327 +++++++++++------- geotech-1.0.1/geotech/R/IndexParameters.R | 210 +++++++----- geotech-1.0.1/geotech/R/LateralEarthPressures.R | 361 +++++++++++++------- geotech-1.0.1/geotech/R/MohrCircle.R | 261 +++++++++------ geotech-1.0.1/geotech/R/Plasticity.R | 208 +++++++---- geotech-1.0.1/geotech/R/PlotBackground.R | 77 ++-- geotech-1.0.1/geotech/R/SlopeStability.R | 113 +++--- geotech-1.0.1/geotech/R/SoilClassification.R | 365 +++++++++++---------- geotech-1.0.1/geotech/R/Stress.R | 350 +++++++++++--------- geotech-1.0.1/geotech/R/SubsurfaceExploration.R | 185 ++++++---- geotech-1.0.1/geotech/R/bearingCapacity.R | 244 +++++++++----- geotech-1.0.1/geotech/R/geotech-package.R |only geotech-1.0.1/geotech/inst |only geotech-1.0.1/geotech/man/A.line.Rd |only geotech-1.0.1/geotech/man/AASHTO.Rd | 169 ++++----- geotech-1.0.1/geotech/man/Dsize.Rd |only geotech-1.0.1/geotech/man/FSinf.Rd |only geotech-1.0.1/geotech/man/FSplanar.Rd |only geotech-1.0.1/geotech/man/GI.Rd |only geotech-1.0.1/geotech/man/K.Rd |only geotech-1.0.1/geotech/man/Ka.Rd |only geotech-1.0.1/geotech/man/Ko.Rd |only geotech-1.0.1/geotech/man/Kp.Rd |only geotech-1.0.1/geotech/man/LI.Rd |only geotech-1.0.1/geotech/man/LL.Rd |only geotech-1.0.1/geotech/man/MohrCircle.calc.Rd |only geotech-1.0.1/geotech/man/MohrCircle.plot.Rd |only geotech-1.0.1/geotech/man/N160.Rd |only geotech-1.0.1/geotech/man/N60.Rd |only geotech-1.0.1/geotech/man/Nc.Rd |only geotech-1.0.1/geotech/man/Ngamma.Rd |only geotech-1.0.1/geotech/man/Nq.Rd |only geotech-1.0.1/geotech/man/PI.Rd |only geotech-1.0.1/geotech/man/USCS.Rd | 168 ++++----- geotech-1.0.1/geotech/man/USCS.coarse.symbol.Rd |only geotech-1.0.1/geotech/man/USCS.fine.symbol.Rd |only geotech-1.0.1/geotech/man/bearingCapacity.Rd | 119 +++--- geotech-1.0.1/geotech/man/bearingPressure.Rd | 80 ++-- geotech-1.0.1/geotech/man/geotech-package.Rd |only geotech-1.0.1/geotech/man/grainSize.coefs.Rd |only geotech-1.0.1/geotech/man/grainSize.plot.Rd |only geotech-1.0.1/geotech/man/induced.area.Rd |only geotech-1.0.1/geotech/man/induced.area.profile.Rd |only geotech-1.0.1/geotech/man/induced.point.Rd |only geotech-1.0.1/geotech/man/induced.point.profile.Rd |only geotech-1.0.1/geotech/man/kConstant.Rd |only geotech-1.0.1/geotech/man/kFalling.Rd |only geotech-1.0.1/geotech/man/kPump.Rd |only geotech-1.0.1/geotech/man/kx.Rd |only geotech-1.0.1/geotech/man/kz.Rd |only geotech-1.0.1/geotech/man/logAxis.Rd |only geotech-1.0.1/geotech/man/logAxis.plot.Rd |only geotech-1.0.1/geotech/man/percentComponents.Rd |only geotech-1.0.1/geotech/man/phase.params.Rd |only geotech-1.0.1/geotech/man/phase.plot.Rd |only geotech-1.0.1/geotech/man/plasticity.plot.Rd |only geotech-1.0.1/geotech/man/relDensity.Rd |only geotech-1.0.1/geotech/man/sigma13.Rd |only geotech-1.0.1/geotech/man/sigmaTrans.Rd |only geotech-1.0.1/geotech/man/sigmaX.Rd |only geotech-1.0.1/geotech/man/sigmaX.plot.Rd |only geotech-1.0.1/geotech/man/sigmaX.profile.Rd |only geotech-1.0.1/geotech/man/sigmaZ.Rd |only geotech-1.0.1/geotech/man/sigmaZ.plot.Rd |only geotech-1.0.1/geotech/man/sigmaZ.profile.Rd |only geotech-1.0.1/geotech/man/size.from.sieve.Rd |only geotech-1.0.1/geotech/man/soil.profile.Rd |only geotech-1.0.1/geotech/man/tauMax.Rd |only geotech-1.0.1/geotech/man/waterContent.Rd |only geotech-1.0.1/geotech/man/wellDrawdown.Rd |only geotech-1.0.1/geotech/man/wellFlow.Rd |only geotech-1.0.1/geotech/tests |only geotech-1.0/geotech/man/MohrCircle.Rd |only geotech-1.0/geotech/man/Plasticity.Rd |only geotech-1.0/geotech/man/SPT.Rd |only geotech-1.0/geotech/man/bearingCapacityFactors.Rd |only geotech-1.0/geotech/man/grainSize.Rd |only geotech-1.0/geotech/man/hydraulicConductivity.Rd |only geotech-1.0/geotech/man/indexParameters.Rd |only geotech-1.0/geotech/man/lateralEarthPressures.Rd |only geotech-1.0/geotech/man/plotBackground.Rd |only geotech-1.0/geotech/man/slopeStability.Rd |only geotech-1.0/geotech/man/soilProfile.Rd |only geotech-1.0/geotech/man/stressHorizontal.Rd |only geotech-1.0/geotech/man/stressInducedArea.Rd |only geotech-1.0/geotech/man/stressInducedPoint.Rd |only geotech-1.0/geotech/man/stressPlot.Rd |only geotech-1.0/geotech/man/stressVertical.Rd |only geotech-1.0/geotech/man/wellHydraulics.Rd |only 94 files changed, 2293 insertions(+), 1470 deletions(-)
Title: Earth Observation Data Cubes from Satellite Image Collections
Description: Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users
define cubes by spatiotemporal extent, resolution, and spatial reference system and let 'gdalcubes' automatically apply cropping, reprojection, and
resampling using the 'Geospatial Data Abstraction Library' ('GDAL'). Implemented functions on data cubes include reduction over space and time,
applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values,
exporting data cubes as 'netCDF' or 'GeoTIFF' files, plotting, and extraction from spatial and or spatiotemporal features.
All computational parts are implemented in C++, linking to the 'GDAL', 'netCDF', 'CURL', and 'SQLite' libraries.
See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
Author: Marius Appel [aut, cre] ,
Edzer Pebesma [ctb] ,
Roger Bivand [ctb],
Rolf Simoes [ctb],
Felipe Carlos [ctb],
Felipe Souza [ctb],
Jeroen Ooms [ctb] ,
Lewis Van Winkle [cph],
Ole Christian Eidheim [cph],
Howard Hinnant [cph],
Adrian Colomitchi [cph],
Fl [...truncated...]
Maintainer: Marius Appel <marius.appel@hs-bochum.de>
This is a re-admission after prior archival of version 0.7.4 dated 2026-05-29
Diff between gdalcubes versions 0.7.4 dated 2026-05-29 and 0.7.6 dated 2026-10-30
DESCRIPTION | 25 + MD5 | 55 ++-- NAMESPACE | 58 ++-- NEWS.md | 12 R/animate.R | 8 R/extract.R | 4 R/predict.R | 32 +- R/selection.R | 2 build/vignette.rds |binary configure | 495 ++++++++++++++++++++------------------ configure.ac | 2 inst/doc/gc01_MODIS.Rmd | 6 inst/doc/gc01_MODIS.html | 43 +-- inst/tinytest/test_filter_geom.R |only man/animate.Rd | 8 man/extract_geom.Rd | 4 man/gdalcubes.Rd | 3 man/gdalcubes_selection.Rd | 2 man/predict.cube.Rd | 32 +- src/gdalcubes/src/build_info.h | 4 src/gdalcubes/src/cube.cpp | 8 src/gdalcubes/src/filesystem.cpp | 14 - src/gdalcubes/src/filesystem.h | 1 src/gdalcubes/src/filter_geom.cpp | 25 + src/gdalcubes/src/gdalcubes.h | 2 src/gdalcubes/src/ncdf_cube.cpp | 18 - src/gdalcubes/src/progress_virt.h | 3 src/gdalcubes/src/warp.cpp | 14 - vignettes/gc01_MODIS.Rmd | 6 29 files changed, 491 insertions(+), 395 deletions(-)
Title: Bayesian Quantitative Decision-Making Framework for Binary,
Continuous and Time-to-Event Endpoints
Description: Bayesian quantitative decision-making for proof-of-concept
clinical trials with Go, NoGo and Gray decisions. A study is specified by
its sample sizes, conjugate prior distributions, external data borrowed
through power priors, a concurrent, external, hypothetical or fixed
control group, and a decision criterion based on the posterior or
posterior predictive probability of the treatment effect. The package
computes the decision for observed data, the operating characteristics
of a design under scenarios for the true parameters, the decision
thresholds that control the probabilities of false Go and false NoGo
decisions, and the observed data that lead to each decision. One
or two binary endpoints (Beta-binomial and Dirichlet-multinomial
models), one or two continuous endpoints (Normal-Inverse-chi-squared and
Normal-Inverse-Wishart models) and one time-to-event endpoint evaluated
by the milestone survival probability or the hazard ratio (exponential
model with Gamma priors) are supported, [...truncated...]
Author: Gosuke Homma [aut, cre],
Yusuke Yamaguchi [aut]
Maintainer: Gosuke Homma <my.name.is.gosuke@gmail.com>
Diff between BayesianQDM versions 0.1.0 dated 2026-04-21 and 1.0.0 dated 2026-10-30
BayesianQDM-0.1.0/BayesianQDM/R/allmultinom.R |only BayesianQDM-0.1.0/BayesianQDM/R/getgamma1bin.R |only BayesianQDM-0.1.0/BayesianQDM/R/getgamma1cont.R |only BayesianQDM-0.1.0/BayesianQDM/R/getgamma2bin.R |only BayesianQDM-0.1.0/BayesianQDM/R/getgamma2cont.R |only BayesianQDM-0.1.0/BayesianQDM/R/getjointbin.R |only BayesianQDM-0.1.0/BayesianQDM/R/pbayesdecisionprob1bin.R |only BayesianQDM-0.1.0/BayesianQDM/R/pbayesdecisionprob1cont.R |only BayesianQDM-0.1.0/BayesianQDM/R/pbayesdecisionprob2bin.R |only BayesianQDM-0.1.0/BayesianQDM/R/pbayesdecisionprob2cont.R |only BayesianQDM-0.1.0/BayesianQDM/R/pbayespostpred1bin.R |only BayesianQDM-0.1.0/BayesianQDM/R/pbayespostpred1cont.R |only BayesianQDM-0.1.0/BayesianQDM/R/pbayespostpred2bin.R |only BayesianQDM-0.1.0/BayesianQDM/R/pbayespostpred2cont.R |only BayesianQDM-0.1.0/BayesianQDM/R/plot.getgamma1bin.R |only BayesianQDM-0.1.0/BayesianQDM/R/plot.getgamma1cont.R |only BayesianQDM-0.1.0/BayesianQDM/R/plot.getgamma2bin.R |only 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Title: Efficiently Access Pro Golf Data
Description: Designed for quickly grabbing PGA Tour data. Includes a large data
update with shot-level PGA Tour 'ShotLink' data, tee times and course setup,
strokes gained, win probability after every hole, a what's in the bag
database (WITBDB) of player equipment, an ID crosswalk between 'ESPN' and
the PGA Tour, and logo image URLs. Leaderboards and hole-by-hole scoring
come from 'ESPN' <https://www.espn.com/golf/> for the PGA Tour, LIV Golf,
LPGA, DP World Tour and Champions Tour. Completed seasons are served from
hosted files for fast repeated access, and data can be saved as RDS, 'Apache
Arrow' Parquet or a 'SQLite' database.
Author: Ray Carpenter [aut, cre, cph]
Maintainer: Ray Carpenter <raymondcarpenter1@gmail.com>
Diff between golfastr versions 0.2.0 dated 2026-02-18 and 0.3.0 dated 2026-10-30
golfastr-0.2.0/golfastr/man/api_espn.Rd |only golfastr-0.2.0/golfastr/man/cache_exists.Rd |only golfastr-0.2.0/golfastr/man/cache_load.Rd |only golfastr-0.2.0/golfastr/man/cache_save.Rd |only golfastr-0.2.0/golfastr/man/espn_core_request.Rd |only golfastr-0.2.0/golfastr/man/espn_site_request.Rd |only golfastr-0.2.0/golfastr/man/fetch_leaderboard_fast.Rd |only golfastr-0.2.0/golfastr/man/fetch_player_holes.Rd |only golfastr-0.2.0/golfastr/man/get_cache_dir.Rd |only golfastr-0.2.0/golfastr/man/get_espn_tour_code.Rd |only golfastr-0.2.0/golfastr/man/get_tournament_summary.Rd |only golfastr-0.3.0/golfastr/DESCRIPTION | 28 - golfastr-0.3.0/golfastr/MD5 | 152 +++-- golfastr-0.3.0/golfastr/NAMESPACE | 13 golfastr-0.3.0/golfastr/NEWS.md | 150 +++++ golfastr-0.3.0/golfastr/R/add_win_probability.R |only golfastr-0.3.0/golfastr/R/analysis.R | 146 +++-- golfastr-0.3.0/golfastr/R/api_espn.R | 15 golfastr-0.3.0/golfastr/R/build_season.R | 35 - golfastr-0.3.0/golfastr/R/cache.R | 45 - golfastr-0.3.0/golfastr/R/calculate_strokes_gained.R |only golfastr-0.3.0/golfastr/R/data_dictionary.R | 265 ++++++++-- golfastr-0.3.0/golfastr/R/data_storage.R | 33 - golfastr-0.3.0/golfastr/R/golfastr-package.R | 1 golfastr-0.3.0/golfastr/R/helpers.R | 67 +- golfastr-0.3.0/golfastr/R/leaderboard_data.R |only golfastr-0.3.0/golfastr/R/load_data.R | 49 - golfastr-0.3.0/golfastr/R/load_holes.R | 72 ++ golfastr-0.3.0/golfastr/R/load_ids.R |only golfastr-0.3.0/golfastr/R/load_leaderboard.R | 47 + golfastr-0.3.0/golfastr/R/load_logos.R |only golfastr-0.3.0/golfastr/R/load_players.R | 3 golfastr-0.3.0/golfastr/R/load_schedule.R | 8 golfastr-0.3.0/golfastr/R/load_season_stats.R | 23 golfastr-0.3.0/golfastr/R/load_shots.R |only golfastr-0.3.0/golfastr/R/load_strokes_gained.R | 63 +- golfastr-0.3.0/golfastr/R/load_witb.R |only golfastr-0.3.0/golfastr/R/plots.R | 117 ++-- golfastr-0.3.0/golfastr/R/release_data.R |only golfastr-0.3.0/golfastr/R/sysdata.rda |only golfastr-0.3.0/golfastr/R/update_db.R |only golfastr-0.3.0/golfastr/R/win_probability.R |only golfastr-0.3.0/golfastr/R/wp_model.R |only golfastr-0.3.0/golfastr/R/wp_skill.R |only golfastr-0.3.0/golfastr/README.md | 94 ++- golfastr-0.3.0/golfastr/data/strokes_gained.rda |binary golfastr-0.3.0/golfastr/man/add_win_probability.Rd |only golfastr-0.3.0/golfastr/man/calculate_strokes_gained.Rd |only golfastr-0.3.0/golfastr/man/compare_players.Rd | 8 golfastr-0.3.0/golfastr/man/field_strength.Rd | 8 golfastr-0.3.0/golfastr/man/get_majors.Rd | 9 golfastr-0.3.0/golfastr/man/get_player.Rd | 14 golfastr-0.3.0/golfastr/man/get_winners.Rd | 13 golfastr-0.3.0/golfastr/man/golfastr-package.Rd | 3 golfastr-0.3.0/golfastr/man/leaderboard.Rd | 10 golfastr-0.3.0/golfastr/man/load_course_setup.Rd |only golfastr-0.3.0/golfastr/man/load_event_ids.Rd |only golfastr-0.3.0/golfastr/man/load_holes.Rd | 34 + golfastr-0.3.0/golfastr/man/load_leaderboard.Rd | 18 golfastr-0.3.0/golfastr/man/load_logos.Rd |only golfastr-0.3.0/golfastr/man/load_pga_hbh.Rd | 9 golfastr-0.3.0/golfastr/man/load_pga_leaderboards.Rd | 11 golfastr-0.3.0/golfastr/man/load_pga_schedule.Rd | 6 golfastr-0.3.0/golfastr/man/load_player_ids.Rd |only golfastr-0.3.0/golfastr/man/load_players.Rd | 3 golfastr-0.3.0/golfastr/man/load_schedule.Rd | 5 golfastr-0.3.0/golfastr/man/load_shots.Rd |only golfastr-0.3.0/golfastr/man/load_strokes_gained.Rd | 28 - golfastr-0.3.0/golfastr/man/load_tee_times.Rd |only golfastr-0.3.0/golfastr/man/load_witb.Rd |only golfastr-0.3.0/golfastr/man/load_witb_switches.Rd |only golfastr-0.3.0/golfastr/man/made_cuts_leaders.Rd | 14 golfastr-0.3.0/golfastr/man/pga_field_descriptions.Rd | 11 golfastr-0.3.0/golfastr/man/player_summary.Rd | 8 golfastr-0.3.0/golfastr/man/plot_head_to_head.Rd | 8 golfastr-0.3.0/golfastr/man/plot_leaderboard.Rd | 8 golfastr-0.3.0/golfastr/man/plot_player.Rd | 8 golfastr-0.3.0/golfastr/man/plot_scoring.Rd | 8 golfastr-0.3.0/golfastr/man/plot_wins.Rd | 10 golfastr-0.3.0/golfastr/man/scoring_avg_leaders.Rd | 14 golfastr-0.3.0/golfastr/man/summarise_strokes_gained.Rd |only golfastr-0.3.0/golfastr/man/top10_leaders.Rd | 14 golfastr-0.3.0/golfastr/man/tournament_history.Rd | 8 golfastr-0.3.0/golfastr/man/update_db.Rd |only golfastr-0.3.0/golfastr/man/win_leaders.Rd | 8 golfastr-0.3.0/golfastr/tests/testthat/helper-releases.R |only golfastr-0.3.0/golfastr/tests/testthat/test-analysis.R |only golfastr-0.3.0/golfastr/tests/testthat/test-cache.R | 20 golfastr-0.3.0/golfastr/tests/testthat/test-data-dictionary.R | 17 golfastr-0.3.0/golfastr/tests/testthat/test-load-data.R | 47 + golfastr-0.3.0/golfastr/tests/testthat/test-load-ids.R |only golfastr-0.3.0/golfastr/tests/testthat/test-load-logos.R |only golfastr-0.3.0/golfastr/tests/testthat/test-load-witb.R |only golfastr-0.3.0/golfastr/tests/testthat/test-loaders-offline.R |only golfastr-0.3.0/golfastr/tests/testthat/test-release-cache.R |only golfastr-0.3.0/golfastr/tests/testthat/test-release-data.R |only golfastr-0.3.0/golfastr/tests/testthat/test-shotlink.R |only golfastr-0.3.0/golfastr/tests/testthat/test-strokes-gained.R |only golfastr-0.3.0/golfastr/tests/testthat/test-update-db.R |only golfastr-0.3.0/golfastr/tests/testthat/test-win-probability.R |only golfastr-0.3.0/golfastr/tests/testthat/test-wp-model.R |only golfastr-0.3.0/golfastr/tests/testthat/test-wp-skill.R |only 102 files changed, 1265 insertions(+), 543 deletions(-)
Title: Focus Group Simulation Using LLM Agents
Description: Moderated focus group discussions simulated with large language
models (LLMs). Participants carry personas built from respondent records or
labeled survey files. A session runs under a specified turn-taking rule,
and one turn can be experimentally manipulated to measure its effect on
the next.
Author: Ali Sanaei [aut, cre]
Maintainer: Ali Sanaei <sanaei@uchicago.edu>
Diff between FocusGroup versions 0.5.2 dated 2026-09-12 and 0.5.6 dated 2026-10-30
DESCRIPTION | 18 MD5 | 154 +- NAMESPACE | 20 NEWS.md | 692 ++++++++++ R/ConversationFlow.R | 377 +++-- R/FGAgent.R | 304 +++- R/FocusGroup.R | 1909 +++++++++++++++++++++++---- R/convenience_wrappers.R | 1924 ++++++++++++++++++++++++---- R/data.R |only R/gui.R | 358 +++-- R/interventions.R |only R/player.R |only R/prompts.R | 211 ++- R/session_files.R |only R/summaries.R |only R/survey_rendering.R |only R/transcript_import.R | 429 +++++- R/utils.R | 1177 ++++++++++++++--- R/zzz.R | 2 README.md | 260 +++ data |only inst/doc/architecture.Rmd | 130 + inst/doc/architecture.html | 151 +- inst/doc/focus-group-analysis.R | 88 + inst/doc/focus-group-analysis.Rmd | 164 ++ inst/doc/focus-group-analysis.html | 243 +++ inst/extdata |only inst/fg-session-spec.md |only inst/player |only man/ConversationFlow.Rd | 61 man/FGAgent.Rd | 208 ++- man/FocusGroup-package.Rd | 24 man/FocusGroup.Rd | 347 ++++- man/analyze_focus_group.Rd | 28 man/anes_2024_personas.Rd |only man/as.data.frame.focus_group_summary.Rd |only man/create_agents.Rd | 34 man/create_agents_from_data.Rd | 96 + man/create_agents_from_survey.Rd | 218 ++- man/create_conversation_flow.Rd | 18 man/extract_token_counts.Rd | 20 man/fg_after_item.Rd |only man/fg_default_na_strings.Rd |only man/fg_injection.Rd |only man/fg_player.Rd |only man/fg_probe.Rd |only man/fg_turns.Rd |only man/figures/player.png |only man/focus_group_from_transcript.Rd | 179 ++ man/format.focus_group_result.Rd |only man/generate_persona.Rd | 31 man/get_default_prompt_templates.Rd | 58 man/make_prompt_history.Rd | 2 man/persona_rendering_report.Rd |only man/print.FocusGroup.Rd | 4 man/print.focus_group_arms.Rd |only man/print.focus_group_result.Rd |only man/print.focus_group_summary.Rd |only man/run_focus_group.Rd | 357 ++++- man/run_focus_group_arms.Rd |only man/run_focus_studio.Rd | 23 man/summarize_focus_group.Rd |only tests/testthat/_snaps |only tests/testthat/fixtures |only tests/testthat/helper-accounting.R |only tests/testthat/helper-gui.R |only tests/testthat/helper-summaries.R |only tests/testthat/test-anes-personas.R |only tests/testthat/test-broadcast-usage.R |only tests/testthat/test-call-on.R |only tests/testthat/test-continuation.R |only tests/testthat/test-default-responses.R |only tests/testthat/test-flows.R | 121 + tests/testthat/test-gui.R | 161 +- tests/testthat/test-handles.R |only tests/testthat/test-import-fields.R |only tests/testthat/test-injection.R |only tests/testthat/test-legacy-usage.R |only tests/testthat/test-moderator-placeholder.R |only tests/testthat/test-phase-scripts.R | 19 tests/testthat/test-player.R |only tests/testthat/test-plot-word-counts.R |only tests/testthat/test-public-surface.R | 28 tests/testthat/test-reasoning-models.R |only tests/testthat/test-regressions.R | 13 tests/testthat/test-results.R | 40 tests/testthat/test-review-fixes.R | 8 tests/testthat/test-routing.R |only tests/testthat/test-runner.R | 13 tests/testthat/test-sampling-validation.R |only tests/testthat/test-session-details.R |only tests/testthat/test-session-files.R |only tests/testthat/test-session-options.R |only tests/testthat/test-session-records.R |only tests/testthat/test-session-recovery.R |only tests/testthat/test-studio-accounting.R |only tests/testthat/test-studio-csv.R |only tests/testthat/test-summaries.R |only tests/testthat/test-survey-ingestion.R | 51 tests/testthat/test-survey-rendering.R |only tests/testthat/test-survey-rows.R |only tests/testthat/test-transcript-import.R | 4 tests/testthat/test-usage-accounting.R |only tests/testthat/test-utils.R | 9 tests/testthat/test-weight-column.R |only vignettes/architecture.Rmd | 130 + vignettes/focus-group-analysis.Rmd | 164 ++ 107 files changed, 9425 insertions(+), 1655 deletions(-)
Title: Statistical Network Analysis of Animal Social Networks
Description: Obtain network structures from animal GPS telemetry observations and
statistically analyse them to assess their adequacy for social network analysis. Methods include
pre-network data permutations, bootstrapping techniques to obtain confidence intervals
for global and node-level network metrics, and correlation and regression analysis of the local network metrics.
Author: Prabhleen Kaur [aut],
Michael Salter-Townshend [ctb, cre]
Maintainer: Michael Salter-Townshend <michael.salter-townshend@ucd.ie>
Diff between aniSNA versions 1.1.1 dated 2024-03-25 and 1.2.1 dated 2026-10-30
DESCRIPTION | 24 +++--- MD5 | 43 +++++----- NEWS.md | 8 +- R/bootstrapping.R | 83 +++++++++++--------- R/correlation_analysis.R | 143 +++++++++++++++++++++++------------- R/data_stream_permutations.R | 77 ++++++++++++++----- R/get_network_summary.R | 48 +++++++++--- R/get_spatial_threshold.R | 57 +++++++++++--- R/global_confidence_intervals.R | 57 ++++++++++---- R/node_level_confidence_intervals.R | 83 +++++++++++--------- R/regression_analysis.R | 107 ++++++++++++++++---------- R/subsample_permuted_networks.R | 12 +-- R/subsampling_analysis.R | 100 +++++++++++++++++++------ README.md | 28 ++++++- data/elk_network_2010.rda |binary inst |only man/aniSNA.Rd | 1 man/correlation_analyze.Rd | 20 ++--- man/node_level_CI.Rd | 11 +- man/plot.list_node_level_CI.Rd | 4 - man/plot.list_permuted_networks.Rd | 3 man/plot_network.Rd | 17 ++++ man/regression_slope_analyze.Rd | 20 ++--- 23 files changed, 631 insertions(+), 315 deletions(-)
Title: Transport Accessibility Measures
Description: A set of fast and convenient functions to help conduct
accessibility analyses. Given a pre-computed travel cost matrix and a land
use dataset (containing for example the location of jobs, healthcare and
population), the package allows one to calculate accessibility levels, and
accessibility poverty and inequality. The package covers the majority of the
most commonly used accessibility measures (such as cumulative opportunities,
gravity-based and floating catchment area methods), some cutting edge
measures proposed in the literature (e.g. balancing cost and constrained
accessibility) as well as the most frequently used inequality and poverty
metrics (such as the Palma ratio, the concentration and Theil indices and
the FGT family of measures).
Author: Rafael H. M. Pereira [aut, cre] ,
Daniel Herszenhut [aut] ,
Anastasia Soukhov [aut],
Christopher Higgins [ctb],
Joey Reid [ctb],
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between accessibility versions 1.5.0 dated 2026-05-12 and 1.6.0 dated 2026-10-30
accessibility-1.5.0/accessibility/man/figures/decay_functions.png |only accessibility-1.5.0/accessibility/man/roxygen/templates/arguments_fca.R |only accessibility-1.5.0/accessibility/man/roxygen/templates/input_data.R |only accessibility-1.5.0/accessibility/tests/test_rafa |only accessibility-1.6.0/accessibility/DESCRIPTION | 32 accessibility-1.6.0/accessibility/MD5 | 199 - accessibility-1.6.0/accessibility/NAMESPACE | 15 accessibility-1.6.0/accessibility/NEWS.md | 127 accessibility-1.6.0/accessibility/R/accessibility-package.R | 215 - accessibility-1.6.0/accessibility/R/apply_gravity_measure.R | 23 accessibility-1.6.0/accessibility/R/assert_and_assign.R | 183 - accessibility-1.6.0/accessibility/R/balancing_cost.R | 123 accessibility-1.6.0/accessibility/R/concentration_index.R | 366 +- accessibility-1.6.0/accessibility/R/constrained_accessibility.R | 88 accessibility-1.6.0/accessibility/R/cost_to_closest.R | 80 accessibility-1.6.0/accessibility/R/cumulative_cutoff.R | 166 - accessibility-1.6.0/accessibility/R/cumulative_interval.R | 136 accessibility-1.6.0/accessibility/R/decay_exponential.R | 6 accessibility-1.6.0/accessibility/R/decay_linear.R | 109 accessibility-1.6.0/accessibility/R/decay_logistic.R | 221 - accessibility-1.6.0/accessibility/R/decay_power.R | 17 accessibility-1.6.0/accessibility/R/decay_stepped.R | 357 +- accessibility-1.6.0/accessibility/R/doubly_constrained.R | 370 +- accessibility-1.6.0/accessibility/R/fgt_poverty.R | 137 accessibility-1.6.0/accessibility/R/fill_missing_ids.R | 17 accessibility-1.6.0/accessibility/R/floating_catchment_area.R | 60 accessibility-1.6.0/accessibility/R/gini_index.R | 48 accessibility-1.6.0/accessibility/R/gravity.R | 11 accessibility-1.6.0/accessibility/R/merge_by_reference.R | 39 accessibility-1.6.0/accessibility/R/palma_ratio.R | 38 accessibility-1.6.0/accessibility/R/singly_constrained.R | 79 accessibility-1.6.0/accessibility/R/spatial_availability.R | 59 accessibility-1.6.0/accessibility/R/sum_by_cost_bin.R |only accessibility-1.6.0/accessibility/R/theil_t.R | 625 ++- accessibility-1.6.0/accessibility/R/total_constrained.R | 113 accessibility-1.6.0/accessibility/R/warn_extra_cols.R | 94 accessibility-1.6.0/accessibility/R/weigh_unique_costs.R |only accessibility-1.6.0/accessibility/README.md | 20 accessibility-1.6.0/accessibility/build/partial.rdb |binary accessibility-1.6.0/accessibility/build/vignette.rds |binary accessibility-1.6.0/accessibility/inst/REFERENCES.bib | 4 accessibility-1.6.0/accessibility/inst/doc/accessibility.R | 22 accessibility-1.6.0/accessibility/inst/doc/accessibility.Rmd | 779 ++-- accessibility-1.6.0/accessibility/inst/doc/accessibility.html | 231 - accessibility-1.6.0/accessibility/inst/doc/decay_functions.Rmd | 8 accessibility-1.6.0/accessibility/inst/doc/decay_functions.html | 41 accessibility-1.6.0/accessibility/inst/doc/inequality_and_poverty.R | 22 accessibility-1.6.0/accessibility/inst/doc/inequality_and_poverty.Rmd | 71 accessibility-1.6.0/accessibility/inst/doc/inequality_and_poverty.html | 78 accessibility-1.6.0/accessibility/man/accessibility.Rd | 15 accessibility-1.6.0/accessibility/man/balancing_cost.Rd | 43 accessibility-1.6.0/accessibility/man/concentration_index.Rd | 15 accessibility-1.6.0/accessibility/man/constrained_accessibility.Rd | 102 accessibility-1.6.0/accessibility/man/cost_to_closest.Rd | 23 accessibility-1.6.0/accessibility/man/cumulative_cutoff.Rd | 21 accessibility-1.6.0/accessibility/man/cumulative_interval.Rd | 27 accessibility-1.6.0/accessibility/man/decay_binary.Rd | 12 accessibility-1.6.0/accessibility/man/decay_exponential.Rd | 12 accessibility-1.6.0/accessibility/man/decay_linear.Rd | 14 accessibility-1.6.0/accessibility/man/decay_logistic.Rd | 15 accessibility-1.6.0/accessibility/man/decay_power.Rd | 12 accessibility-1.6.0/accessibility/man/decay_stepped.Rd | 15 accessibility-1.6.0/accessibility/man/doubly_constrained.Rd | 4 accessibility-1.6.0/accessibility/man/fgt_poverty.Rd | 62 accessibility-1.6.0/accessibility/man/floating_catchment_area.Rd | 25 accessibility-1.6.0/accessibility/man/gini_index.Rd | 13 accessibility-1.6.0/accessibility/man/gravity.Rd | 28 accessibility-1.6.0/accessibility/man/palma_ratio.Rd | 13 accessibility-1.6.0/accessibility/man/roxygen/templates/active.R | 2 accessibility-1.6.0/accessibility/man/roxygen/templates/decay_function.R | 7 accessibility-1.6.0/accessibility/man/roxygen/templates/fill_missing_ids_combinations.R | 4 accessibility-1.6.0/accessibility/man/roxygen/templates/group_by.R | 4 accessibility-1.6.0/accessibility/man/roxygen/templates/land_use_data.R | 3 accessibility-1.6.0/accessibility/man/roxygen/templates/opportunity_access.R | 2 accessibility-1.6.0/accessibility/man/spatial_availability.Rd | 33 accessibility-1.6.0/accessibility/man/theil_t.Rd | 21 accessibility-1.6.0/accessibility/tests/testthat/test-assert_land_use_data.R | 27 accessibility-1.6.0/accessibility/tests/testthat/test-assert_sociodemographic_data_warnings.R | 8 accessibility-1.6.0/accessibility/tests/testthat/test-balancing_cost.R | 604 ++- accessibility-1.6.0/accessibility/tests/testthat/test-concentration_index.R | 566 ++- accessibility-1.6.0/accessibility/tests/testthat/test-constrained-essentials.R | 1623 +++++++++- accessibility-1.6.0/accessibility/tests/testthat/test-constrained-wrapper.R | 196 - accessibility-1.6.0/accessibility/tests/testthat/test-cost_to_closest.R | 24 accessibility-1.6.0/accessibility/tests/testthat/test-cumulative_cutoff.R | 204 + accessibility-1.6.0/accessibility/tests/testthat/test-cumulative_interval.R | 958 +++-- accessibility-1.6.0/accessibility/tests/testthat/test-decay_linear.R | 8 accessibility-1.6.0/accessibility/tests/testthat/test-decay_logistic.R | 122 accessibility-1.6.0/accessibility/tests/testthat/test-decay_stepped.R | 204 - accessibility-1.6.0/accessibility/tests/testthat/test-fgt_poverty.R | 534 +-- accessibility-1.6.0/accessibility/tests/testthat/test-floating_catchment_area.R | 78 accessibility-1.6.0/accessibility/tests/testthat/test-gini_index.R | 367 +- accessibility-1.6.0/accessibility/tests/testthat/test-gravity.R | 53 accessibility-1.6.0/accessibility/tests/testthat/test-merge_by_reference.R |only accessibility-1.6.0/accessibility/tests/testthat/test-na_land_use.R |only accessibility-1.6.0/accessibility/tests/testthat/test-palma_ratio.R | 661 ++-- accessibility-1.6.0/accessibility/tests/testthat/test-spatial_availability.R | 758 ++-- accessibility-1.6.0/accessibility/tests/testthat/test-theil_t.R | 1000 +++--- accessibility-1.6.0/accessibility/tests/testthat/test-weigh_unique_costs.R |only accessibility-1.6.0/accessibility/vignettes/accessibility.Rmd | 779 ++-- accessibility-1.6.0/accessibility/vignettes/decay_functions.Rmd | 8 accessibility-1.6.0/accessibility/vignettes/inequality_and_poverty.Rmd | 71 101 files changed, 9568 insertions(+), 5261 deletions(-)
Title: Fitting Frailty Models with the EM Algorithm
Description: Contains functions for fitting shared frailty models with a semi-parametric
baseline hazard with the Expectation-Maximization algorithm. Supported data formats
include clustered failures with left truncation and recurrent events in gap-time
or Andersen-Gill format. Several frailty distributions, such as the the gamma, positive stable
and the Power Variance Family are supported.
Author: Theodor Adrian Balan [aut, cre],
Hein Putter [aut]
Maintainer: Theodor Adrian Balan <hello@tbalan.com>
Diff between frailtyEM versions 1.0.1 dated 2019-09-22 and 1.0.2 dated 2026-10-30
DESCRIPTION | 21 ++++++--- MD5 | 45 ++++++++++---------- NAMESPACE | 90 ++++++++++++++++++++++------------------- NEWS.md | 5 ++ R/ca_test_fit.R | 3 - R/emfrail.R | 6 +- R/emfrail_arguments.R | 18 ++++---- build/vignette.rds |binary inst/CITATION | 34 +++++++-------- inst/doc/frailtyEM_manual.R | 1 inst/doc/frailtyEM_manual.Rnw | 2 inst/doc/frailtyEM_manual.pdf |binary man/autoplot.emfrail.Rd | 17 +++++-- man/ca_test_fit.Rd |only man/emfrail.Rd | 12 ++++- man/emfrail_control.Rd | 38 ++++++++++------- man/emfrail_dist.Rd | 9 +++- man/frailtyEM-package.Rd | 6 -- man/plot.emfrail.Rd | 17 +++++-- man/predict.emfrail.Rd | 16 +++++-- man/summary.emfrail.Rd | 10 +++- src/RcppExports.cpp | 5 ++ vignettes/frailtyEM_manual.Rnw | 2 vignettes/mybib.bib | 24 +++++----- 24 files changed, 226 insertions(+), 155 deletions(-)
Title: GeoZarr Conventions for Geospatial Data in Zarr Stores
Description: Large-scale gridded data stores are increasingly using the Zarr
format. GeoZarr is defined in terms of a number of community conventions
built on top of the Zarr specification. These conventions specify how Zarr
metadata is to be interpreted to attach semantic meaning to the data in the
Zarr array providing the metadata. This package implements a number of
community conventions on top of the 'zarr' package, enabling the R community
to use geospatial data stored in Zarr.
Author: Patrick Van Laake [aut, cre]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between geozarr versions 0.2.0 dated 2026-09-15 and 0.3.0 dated 2026-10-30
DESCRIPTION | 8 MD5 | 81 ++++--- NAMESPACE | 2 NEWS.md | 12 + R/api.R | 116 +++------- R/axis.R | 83 ++----- R/convention_cs.R | 26 +- R/convention_proj.R | 33 +- R/convention_spatial.R | 52 ++-- R/coordinate_system.R | 20 + R/coordinates.R | 330 ++++++++++++++++++----------- R/domain_geozarr.R | 111 +++++---- R/geozarr_array.R | 237 +++++++++++--------- R/geozarr_group.R | 5 R/identified_object.R | 2 R/utils.R | 147 +++++++++++- R/zzz.R | 16 - README.md | 86 +++---- man/CoordinateSystemAxis.Rd | 102 -------- man/Coordinates.Rd | 92 -------- man/CoordinatesIrregular.Rd |only man/CoordinatesOrdinal.Rd | 25 -- man/CoordinatesPacked.Rd | 5 man/CoordinatesString.Rd | 5 man/CoordinatesTime.Rd | 30 ++ man/as_geozarr.Rd | 27 -- man/create_geozarr_array.Rd | 14 - man/geozarr_array.Rd | 39 +-- man/geozarr_group.Rd | 4 man/set_convention.Rd | 18 - man/zarr_conv_proj.Rd | 28 -- man/zarr_conv_spatial.Rd | 28 -- man/zarr_convention_cs.Rd | 6 man/zarr_domain_geozarr.Rd | 5 tests/testthat/helper-geozarr.R |only tests/testthat/test-api.R | 54 +++- tests/testthat/test-axis.R |only tests/testthat/test-convention_cs.R |only tests/testthat/test-convention_proj.R |only tests/testthat/test-convention_spatial.R |only tests/testthat/test-coordinate_system.R |only tests/testthat/test-coordinates.R |only tests/testthat/test-create_geozarr_array.R |only tests/testthat/test-domain.R |only tests/testthat/test-geozarr_array.R |only tests/testthat/test-identified_object.R |only tests/testthat/test-print.R |only tests/testthat/test-set_convention.R |only tests/testthat/test-utils.R |only 49 files changed, 941 insertions(+), 908 deletions(-)
Title: Computes Proximity in Large Matrices
Description: Computes proximity between rows or columns of large matrices efficiently in C++.
Functions are optimised for large matrices using the Armadillo and Intel TBB libraries.
Among various built-in similarity/distance measures, computation of correlation,
cosine similarity, Dice coefficient and Euclidean distance is particularly fast.
Author: Kohei Watanabe [cre, aut, cph] ,
Robrecht Cannoodt [aut]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between proxyC versions 0.5.2 dated 2025-04-25 and 0.6.0 dated 2026-10-30
DESCRIPTION | 19 +- MD5 | 70 +++++--- NAMESPACE | 6 NEWS.md | 11 + R/RcppExports.R | 36 ++-- R/crossprod.R |only R/mask.R | 2 R/proxy.R | 122 ++++++++------ R/utils.R | 192 +++++++++++++++++------ README.md | 32 ++- build/vignette.rds |binary inst/doc/measures.html | 4 man/colMaxs.Rd |only man/colSds.Rd | 14 + man/colZeros.Rd | 7 man/crossprod.Rd | 16 + man/figures/unnamed-chunk-5-1.png |binary man/figures/unnamed-chunk-6-1.png |binary man/figures/unnamed-chunk-7-1.png |only man/figures/unnamed-chunk-8-1.png |binary man/figures/unnamed-chunk-9-1.png |only man/maxCol.Rd |only man/simil.Rd | 21 +- src/RcppExports.cpp | 121 +++++++++----- src/linear.cpp | 198 +++-------------------- src/linear.h |only src/mask.cpp | 4 src/pair.cpp | 314 +++----------------------------------- src/pair.h |only src/proxyc.h | 34 +++- src/utility.cpp | 68 ++++++++ src/utility.h |only tests/misc |only tests/testthat/test-crossprod.R | 71 ++++++-- tests/testthat/test-dense.R |only tests/testthat/test-dist.R | 4 tests/testthat/test-mask.R | 5 tests/testthat/test-proxy.R | 137 ++++++++++++---- tests/testthat/test-utils.R |only 39 files changed, 784 insertions(+), 724 deletions(-)
Title: Parsing Glycan Structure Text Representations
Description: Provides functions to parse glycan structure text representations
into 'glyrepr' glycan structures. Currently, it supports StrucGP-style,
pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, IUPAC-compact,
WURCS, LINUCS, Linear Code, GlycoCT, KCF, and GlycoWorkbench formats. It
also provides an automatic parser to detect the format and parse the
structure string.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glyparse versions 0.8.1 dated 2026-08-28 and 1.0.0 dated 2026-10-30
glyparse-0.8.1/glyparse/R/furanose.R |only glyparse-0.8.1/glyparse/R/utils.R |only glyparse-1.0.0/glyparse/DESCRIPTION | 16 glyparse-1.0.0/glyparse/MD5 | 91 glyparse-1.0.0/glyparse/NAMESPACE | 2 glyparse-1.0.0/glyparse/NEWS.md | 15 glyparse-1.0.0/glyparse/R/RcppExports.R |only glyparse-1.0.0/glyparse/R/auto-parse.R | 82 glyparse-1.0.0/glyparse/R/native.R |only glyparse-1.0.0/glyparse/R/parse-glycam-iupac.R | 273 glyparse-1.0.0/glyparse/R/parse-glycoct.R | 2756 ---------- glyparse-1.0.0/glyparse/R/parse-gwb.R | 641 -- glyparse-1.0.0/glyparse/R/parse-iupac-compact.R | 351 - glyparse-1.0.0/glyparse/R/parse-iupac-condensed.R | 6 glyparse-1.0.0/glyparse/R/parse-iupac-extended.R | 174 glyparse-1.0.0/glyparse/R/parse-iupac-short.R | 80 glyparse-1.0.0/glyparse/R/parse-kcf.R | 596 -- glyparse-1.0.0/glyparse/R/parse-linear-code.R | 49 glyparse-1.0.0/glyparse/R/parse-linucs.R | 637 -- glyparse-1.0.0/glyparse/R/parse-pglyco.R | 73 glyparse-1.0.0/glyparse/R/parse-strucgp.R | 82 glyparse-1.0.0/glyparse/R/parse-wurcs.R | 1336 ---- glyparse-1.0.0/glyparse/R/struc-parser-wrapper.R | 195 glyparse-1.0.0/glyparse/README.md | 21 glyparse-1.0.0/glyparse/inst/doc/glyparse.html | 464 - glyparse-1.0.0/glyparse/man/glyparse_options.Rd |only glyparse-1.0.0/glyparse/man/parse_glycoct.Rd | 11 glyparse-1.0.0/glyparse/man/parse_kcf.Rd | 11 glyparse-1.0.0/glyparse/man/parse_linucs.Rd | 11 glyparse-1.0.0/glyparse/man/parse_pglyco_struc.Rd | 11 glyparse-1.0.0/glyparse/man/parse_strucgp_struc.Rd | 11 glyparse-1.0.0/glyparse/man/parse_wurcs.Rd | 11 glyparse-1.0.0/glyparse/src |only glyparse-1.0.0/glyparse/tests/testthat/_snaps/performance.md |only glyparse-1.0.0/glyparse/tests/testthat/fixtures |only glyparse-1.0.0/glyparse/tests/testthat/helper-native.R |only glyparse-1.0.0/glyparse/tests/testthat/test-auto-parse.R | 38 glyparse-1.0.0/glyparse/tests/testthat/test-native.R |only glyparse-1.0.0/glyparse/tests/testthat/test-parse-glycoct.R | 5 glyparse-1.0.0/glyparse/tests/testthat/test-parse-pglyco.R | 10 glyparse-1.0.0/glyparse/tests/testthat/test-parse-strucgp.R | 10 glyparse-1.0.0/glyparse/tests/testthat/test-parse-wurcs.R | 18 glyparse-1.0.0/glyparse/tests/testthat/test-parser-arrays.R |only glyparse-1.0.0/glyparse/tests/testthat/test-parser-batch-performance.R |only glyparse-1.0.0/glyparse/tests/testthat/test-performance.R | 122 glyparse-1.0.0/glyparse/tests/testthat/test-progress.R | 87 glyparse-1.0.0/glyparse/tests/testthat/test-struc-parser-wrapper.R | 23 47 files changed, 750 insertions(+), 7569 deletions(-)
Title: Non-Negative Matrix Factorization with Kernel Covariates
Description: Performs Non-negative Matrix Factorization (NMF)
with Kernel Covariates. Given an observation matrix and kernel
covariates, it optimizes both a basis matrix and a parameter matrix.
Notably, if the kernel matrix is an identity matrix, the method
simplifies to standard NMF. Also provides NMF with Random Effects
(NMF-RE) via nmfre(), which estimates a mixed-effects model combining
covariate-driven scores with unit-specific random effects together
with wild bootstrap inference, and NMF with feed-forward and feedback
structure (NMF-FFB) via nmf.ffb(), which fits a two-block input-output
model for blind source separation and path analysis.
References: Satoh (2025) <doi:10.48550/arXiv.2403.05359>;
Satoh (2026) <doi:10.1007/s42081-026-00349-x>;
Satoh (2025) <doi:10.48550/arXiv.2512.18250>;
Satoh (2026) <doi:10.48550/arXiv.2603.01468>;
Satoh and Tokuda (2026) <doi:10.48550/arXiv.2607.27474>;
Satoh (2026) <doi:10.1007/s42081-025-00314-0>.
Author: Kenichi Satoh [aut, cre]
Maintainer: Kenichi Satoh <kenichi-satoh@biwako.shiga-u.ac.jp>
Diff between nmfkc versions 0.9.8 dated 2026-09-22 and 1.0.2 dated 2026-10-29
.aspell |only DESCRIPTION | 13 MD5 | 147 NEWS.md | 3609 +++++++++++--------- R/inference-boot.R | 383 +- R/nmf.ffb.R | 55 R/nmf.ffb.fiml.R | 45 R/nmf.gmm.R | 351 +- R/nmfae.R | 94 R/nmfae.signed.R | 19 R/nmfkc.R | 705 +++- R/nmfkc.ar.R | 4843 ++++++++++++++-------------- R/nmfkc.ard.R | 446 +- R/nmfkc.bicv.R | 638 +-- R/nmfkc.consensus.R | 554 +-- R/nmfkc.net.R | 315 + R/nmfkc.signed.R | 80 R/nmfkc.signed.rff.R | 330 - R/nmfre.R | 95 R/s3methods.R | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/introduction-to-nmfkc.R | 132 inst/doc/introduction-to-nmfkc.html | 1124 +++--- man/nmf.ffb.Rd | 9 man/nmf.ffb.inference.Rd | 7 man/nmf.gmm.Rd | 52 man/nmf.gmm.twostage.Rd | 15 man/nmf.rrr.Rd | 9 man/nmf.rrr.ecv.Rd | 4 man/nmf.rrr.inference.Rd | 10 man/nmf.rrr.signed.ecv.Rd | 4 man/nmfkc.Rd | 80 man/nmfkc.ar.DOT.Rd | 156 man/nmfkc.ar.Rd | 106 man/nmfkc.ar.latent.inference.Rd | 130 man/nmfkc.ar.predict.Rd | 84 man/nmfkc.class.Rd | 54 man/nmfkc.denormalize.Rd | 58 man/nmfkc.ecv.Rd | 12 man/nmfkc.inference.Rd | 48 man/nmfkc.kernel.gaussian.Rd | 128 man/nmfkc.net.Rd | 13 man/nmfkc.net.ecv.Rd | 63 man/nmfkc.normalize.Rd | 58 man/nmfkc.residual.plot.Rd | 96 man/nmfkc.signed.Rd | 10 man/nmfkc.signed.ecv.Rd | 5 man/nmfre.Rd | 8 man/nmfre.inference.Rd | 156 man/plot.nmfkc.Rd | 60 man/print.summary.nmfkc.Rd | 56 man/summary.nmfkc.Rd | 80 man/summary.nmfkc.inference.Rd | 46 tests/testthat/helper-nmfkc.R | 50 tests/testthat/test-anchor-families.R |only tests/testthat/test-formula-mode.R | 590 +-- tests/testthat/test-nmf.cluster.criteria.R | 128 tests/testthat/test-nmf.cluster.flow.R | 106 tests/testthat/test-nmf.ffb.fiml.R | 13 tests/testthat/test-nmf.gmm.R | 76 tests/testthat/test-nmfae.R | 21 tests/testthat/test-nmfkc.R | 96 tests/testthat/test-nmfkc.anchor.R |only tests/testthat/test-nmfkc.ar.latent.R | 1626 +++++---- tests/testthat/test-nmfkc.ard.R | 138 tests/testthat/test-nmfkc.bicv.R | 62 tests/testthat/test-nmfkc.consensus.R | 144 tests/testthat/test-nmfkc.ecv-weights.R |only tests/testthat/test-nmfkc.inference-boot.R | 37 tests/testthat/test-nmfkc.inference.R | 352 +- tests/testthat/test-nmfkc.init-repair.R |only tests/testthat/test-nmfkc.kernel.beta.R | 64 tests/testthat/test-nmfkc.net.R | 525 +-- tests/testthat/test-nmfkc.net.ecv-options.R |only tests/testthat/test-nmfkc.separability.R |only tests/testthat/test-nmfkc.signed.weighted.R | 180 - tests/testthat/test-nmfre.R | 125 tests/testthat/test-wild-block.R |only 79 files changed, 11410 insertions(+), 8519 deletions(-)
Title: Variance-Aware Michaelis-Menten Estimation and Inference
Description: Variance-aware Michaelis-Menten estimation, model screening,
grouped enzyme-kinetic analyses, and clustered repeated-measurement
workflows. The package implements profile-score estimators under
built-in or user-defined fixed working variance functions for single
curves, optional higher-moment estimating equations for independent
observations with asymmetric errors, and a lightweight cluster-aware
working-covariance extension with optional conditional projected scores
for an unspecified random-effect density, Wald and bootstrap confidence intervals,
prediction utilities, and simulation helpers. Related methodology is
discussed by Kim and Ma (2012) <doi:10.1007/s10463-011-0332-y>, Kim
(2023) <doi:10.1002/sta4.606>, and Ma and Genton (2010)
<doi:10.1111/j.1467-9868.2010.00741.x>.
Author: Mijeong Kim [aut, cre],
Minkyoung Cha [aut],
Ah Young Jeong [aut]
Maintainer: Mijeong Kim <m.kim@ewha.ac.kr>
Diff between inferMM versions 0.0.3 dated 2026-06-04 and 0.1.1 dated 2026-10-29
inferMM-0.0.3/inferMM/tests/testthat/Rplots.pdf |only inferMM-0.1.1/inferMM/DESCRIPTION | 13 inferMM-0.1.1/inferMM/MD5 | 65 inferMM-0.1.1/inferMM/NAMESPACE | 7 inferMM-0.1.1/inferMM/NEWS.md | 84 + inferMM-0.1.1/inferMM/R/clustered.R | 95 - inferMM-0.1.1/inferMM/R/clustered_projected.R |only inferMM-0.1.1/inferMM/R/fit_mm.R | 131 - inferMM-0.1.1/inferMM/R/grouped.R | 8 inferMM-0.1.1/inferMM/R/methods.R | 8 inferMM-0.1.1/inferMM/R/moments.R |only inferMM-0.1.1/inferMM/R/profile.R |only inferMM-0.1.1/inferMM/R/report_mm.R | 7 inferMM-0.1.1/inferMM/R/screen.R | 13 inferMM-0.1.1/inferMM/R/simulate.R | 21 inferMM-0.1.1/inferMM/R/utils.R | 27 inferMM-0.1.1/inferMM/R/variance.R | 102 + inferMM-0.1.1/inferMM/README.md | 246 ++ inferMM-0.1.1/inferMM/build/partial.rdb |only inferMM-0.1.1/inferMM/build/vignette.rds |binary inferMM-0.1.1/inferMM/inst/CITATION | 4 inferMM-0.1.1/inferMM/inst/doc/infer-mm-workflow.R | 42 inferMM-0.1.1/inferMM/inst/doc/infer-mm-workflow.Rmd | 154 + inferMM-0.1.1/inferMM/inst/doc/infer-mm-workflow.html | 822 ++++++---- inferMM-0.1.1/inferMM/man/cluster_mm.Rd | 110 + inferMM-0.1.1/inferMM/man/fit_mm.Rd | 72 inferMM-0.1.1/inferMM/man/fit_mm_moments.Rd |only inferMM-0.1.1/inferMM/man/group_mm.Rd | 12 inferMM-0.1.1/inferMM/man/inferMM-package.Rd | 9 inferMM-0.1.1/inferMM/man/report_mm.Rd | 10 inferMM-0.1.1/inferMM/man/screen_mm.Rd | 31 inferMM-0.1.1/inferMM/man/simulate_mm_data.Rd | 19 inferMM-0.1.1/inferMM/man/variance_function.Rd | 26 inferMM-0.1.1/inferMM/tests/testthat/test-cluster-data.R |only inferMM-0.1.1/inferMM/tests/testthat/test-cluster-projected.R |only inferMM-0.1.1/inferMM/tests/testthat/test-custom-variance.R |only inferMM-0.1.1/inferMM/tests/testthat/test-higher-moments.R |only inferMM-0.1.1/inferMM/tests/testthat/test-profile-validation.R |only inferMM-0.1.1/inferMM/vignettes/infer-mm-workflow.Rmd | 154 + 39 files changed, 1809 insertions(+), 483 deletions(-)
Title: Dataset of the 'Contoso' Company
Description: A collection of synthetic datasets simulating sales transactions from a fictional company. The dataset includes various related tables that contain essential business and operational data, useful for analyzing sales performance and other business insights. Key tables included in the package are:
- "sales": Contains data on individual sales transactions, including order details, pricing, quantities, and customer information.
- "customer": Stores customer-specific details such as demographics, geographic location, occupation, and birthday.
- "store": Provides information about stores, including location, size, status, and operational dates.
- "orders": Contains details about customer orders, including order and delivery dates, store, and customer data.
- "product": Contains data on products, including attributes such as product name, category, price, cost, and weight.
- "calendar": A time-based table that includes date-related attributes like year, month, quarter, day, and working day in [...truncated...]
Author: Alejandro Hagan [aut, cre]
Maintainer: Alejandro Hagan <alejandro.hagan@outlook.com>
Diff between contoso versions 2.1.0 dated 2026-02-28 and 2.4.0 dated 2026-10-29
DESCRIPTION | 13 ++- MD5 | 44 ++++++++----- NAMESPACE | 2 NEWS.md | 132 ++++++++++++++++++++++++++++++++++++++++ R/data.R | 137 ++++++++++++++++++++++++++++++------------ R/database.R | 20 ++++-- R/reports.R |only README.md | 70 +++++++++++++++++---- data/customer.rda |binary inst/CITATION | 7 +- inst/extdata |only man/calendar.Rd | 35 +++++++--- man/create_contoso_duckdb.Rd | 22 +++++- man/customer.Rd | 18 ++++- man/export_reports.Rd |only man/fx.Rd | 2 man/orderrows.Rd | 5 - man/orders.Rd | 2 man/product.Rd | 11 ++- man/read_reports.Rd |only man/sales.Rd | 26 ++++++- man/store.Rd | 47 +++++++++++--- tests/testthat/test-data.R |only tests/testthat/test-reports.R |only 24 files changed, 473 insertions(+), 120 deletions(-)
Title: Infer Cell-Cell Communication from Spatial Transcriptomics
Description: Identifies cell-cell communication hotspots in spatial
transcriptomics data using bivariate Local Moran's I statistics
on hexagonally binned cells. Provides functions for spatial
weighting, ligand-receptor pair filtering, hotspot detection,
and visualisation of sender-receiver cell-type interactions.
Author: Yunshun Chen [aut, cre],
Lei Qin [aut],
Lizhong Chen [aut]
Maintainer: Yunshun Chen <yuchen@wehi.edu.au>
Diff between blisa versions 1.0.0 dated 2026-07-10 and 1.0.3 dated 2026-10-29
blisa-1.0.0/blisa/inst/doc/getting-started.Rmd |only blisa-1.0.0/blisa/inst/doc/getting-started.html |only blisa-1.0.0/blisa/vignettes/getting-started.Rmd |only blisa-1.0.3/blisa/DESCRIPTION | 9 blisa-1.0.3/blisa/MD5 | 60 + blisa-1.0.3/blisa/NAMESPACE | 3 blisa-1.0.3/blisa/NEWS.md | 23 blisa-1.0.3/blisa/R/blisa-class.R | 19 blisa-1.0.3/blisa/R/blisa.R | 762 +++++++++++++----------- blisa-1.0.3/blisa/R/blisaPathway.R |only blisa-1.0.3/blisa/R/blisaVisium.R |only blisa-1.0.3/blisa/R/computeSpatialWeights.R | 54 - blisa-1.0.3/blisa/R/imports.R | 1 blisa-1.0.3/blisa/R/plotCCIspatial.R | 32 - blisa-1.0.3/blisa/R/plotHotspots.R | 129 +++- blisa-1.0.3/blisa/R/plotLRrank.R | 112 ++- blisa-1.0.3/blisa/R/runCCI.R | 45 + blisa-1.0.3/blisa/R/utils.R | 2 blisa-1.0.3/blisa/README.md | 42 + blisa-1.0.3/blisa/build/vignette.rds |binary blisa-1.0.3/blisa/inst/doc/visium.Rmd |only blisa-1.0.3/blisa/inst/doc/visium.html |only blisa-1.0.3/blisa/inst/doc/xenium.Rmd |only blisa-1.0.3/blisa/inst/doc/xenium.html |only blisa-1.0.3/blisa/man/blisa-package.Rd | 2 blisa-1.0.3/blisa/man/blisa.Rd | 25 blisa-1.0.3/blisa/man/blisaPathway.Rd |only blisa-1.0.3/blisa/man/computeSpatialWeights.Rd | 20 blisa-1.0.3/blisa/man/figures |only blisa-1.0.3/blisa/man/new_blisa.Rd | 12 blisa-1.0.3/blisa/man/plotCCIspatial.Rd | 13 blisa-1.0.3/blisa/man/plotHotspots.Rd | 33 + blisa-1.0.3/blisa/man/plotLRrank.Rd | 24 blisa-1.0.3/blisa/man/runCCI.Rd | 13 blisa-1.0.3/blisa/man/visiumSpotBins.Rd |only blisa-1.0.3/blisa/vignettes/visium.Rmd |only blisa-1.0.3/blisa/vignettes/visium.Rmd.orig |only blisa-1.0.3/blisa/vignettes/xenium.Rmd |only blisa-1.0.3/blisa/vignettes/xenium.Rmd.orig |only 39 files changed, 904 insertions(+), 531 deletions(-)
Title: Maps of the Provinces, Cantons and Parishes of Ecuador (Mapas de
Provincias, Cantones y Parroquias del Ecuador)
Description: Provides the boundaries of the provinces, cantons and parishes
of Ecuador as 'sf' objects, identified by the codes of the national
political-administrative division (DPA, "División Político-Administrativa"),
ready to be mapped and joined with health, epidemiological surveillance or
other data. The three levels nest exactly and are offered in two
resolutions: a light one for maps and dashboards and a detailed one for
spatial analysis. The layers are derived from the open data of the
Territorial Organization of the State published by the National Committee
of Internal Boundaries (CONALI, Ministry of Government of Ecuador) under a
CC BY licence <https://www.datosabiertos.gob.ec/>, and are downloaded on
first use as 'GeoPackage' files, verified and cached locally. Includes a
catalogue of DPA codes, a table to update codes from earlier versions,
helpers to clean codes and place names, and tools to relocate the
Galapagos Islands in national maps. Documentation is in Spanish.
Author: Ronald Fabricio Salas Guerrero [aut, cre, cph]
Maintainer: Ronald Fabricio Salas Guerrero <fabriciosalasguerrero@gmail.com>
Diff between geoecu versions 0.3.0 dated 2026-10-22 and 0.4.1 dated 2026-10-29
DESCRIPTION | 24 - MD5 | 63 +-- NAMESPACE | 1 NEWS.md | 68 +++ R/archivos.R | 12 R/datos.R | 59 ++ R/galapagos.R | 2 R/geoecu-package.R | 10 R/leer.R | 70 ++- R/utilidades.R | 50 ++ R/zzz.R | 8 README.md | 689 +++++++++++++++++++++++++++++----- data/dpa.rda |binary data/dpa_equivalencias.rda |only inst |only man/actualizar_codigo.Rd |only man/dpa.Rd | 25 - man/dpa_equivalencias.Rd |only man/figures/README-cantones.png |only man/figures/README-densidad.png |only man/figures/README-loja.png |binary man/figures/README-nacional.png |binary man/figures/README-niveles.png |binary man/figures/README-parroquias.png |only man/figures/README-provincias.png |only man/figures/logo.png |binary man/geoecu-package.Rd | 16 man/geoecu_cache_dir.Rd | 2 man/geoecu_limpiar_cache.Rd | 2 man/geoecu_unir.Rd | 2 man/marco_galapagos.Rd | 2 man/read_dpa.Rd | 53 +- man/reubicar_galapagos.Rd | 2 tests/testthat/test-dpa.R | 26 - tests/testthat/test-equivalencias.R |only tests/testthat/test-leer.R | 45 +- tests/testthat/test-resolucion-alta.R |only 37 files changed, 1037 insertions(+), 194 deletions(-)
Title: Bayesian Regression Modeling Strategies
Description: A Bayesian companion to the 'rms' package, 'rmsb' provides Bayesian model fitting, post-fit estimation, and graphics. It implements Bayesian regression models whose fit objects can be processed by 'rms' functions such as 'contrast()', 'summary()', 'Predict()', 'nomogram()', and 'latex()'. The fitting function currently implemented in the package is 'blrm()' for Bayesian logistic binary and ordinal regression with optional clustering, censoring, and departures from the proportional odds assumption using the partial proportional odds model of Peterson and Harrell (1990) <https://www.jstor.org/stable/2347760>.
Author: Frank Harrell [aut, cre] ,
Ben Goodrich [ctb] ,
Ben Bolker [ctb] ,
Doug Bates [ctb]
Maintainer: Frank Harrell <fh@fharrell.com>
Diff between rmsb versions 1.1-2 dated 2025-04-13 and 1.1-3 dated 2026-10-29
rmsb-1.1-2/rmsb/man/cluster.Rd |only rmsb-1.1-3/rmsb/DESCRIPTION | 17 rmsb-1.1-3/rmsb/MD5 | 25 rmsb-1.1-3/rmsb/NAMESPACE | 1 rmsb-1.1-3/rmsb/NEWS | 6 rmsb-1.1-3/rmsb/R/blrm.r | 2176 +++++++++++++++++-------------- rmsb-1.1-3/rmsb/R/stanMisc.r | 11 rmsb-1.1-3/rmsb/inst/stan/lrmconppo.stan | 16 rmsb-1.1-3/rmsb/man/blrm.Rd | 14 rmsb-1.1-3/rmsb/man/print.blrm.Rd | 3 rmsb-1.1-3/rmsb/man/stackMI.Rd | 2 rmsb-1.1-3/rmsb/man/stanDxplot.Rd | 4 rmsb-1.1-3/rmsb/man/stanGet.Rd | 4 rmsb-1.1-3/rmsb/man/vcov.rmsb.Rd | 2 14 files changed, 1262 insertions(+), 1019 deletions(-)
Title: Find All TODO Comments and More
Description: This is a simple addin to 'RStudio' that finds all 'TODO', 'FIX ME', 'CHANGED' etc. comments in your project and shows them as a markers list.
Author: Dominik Krzeminski [aut, cre]
Maintainer: Dominik Krzeminski <raymon92@gmail.com>
Diff between todor versions 0.1.2 dated 2021-05-24 and 0.1.3 dated 2026-10-29
todor-0.1.2/todor/R/gh.R |only todor-0.1.3/todor/DESCRIPTION | 8 ++++---- todor-0.1.3/todor/MD5 | 11 +++++------ todor-0.1.3/todor/R/todor.R | 22 +++++++++++++++++----- todor-0.1.3/todor/inst/rstudio/addins.dcf | 6 +++--- todor-0.1.3/todor/man/todor.Rd | 10 +++++++--- todor-0.1.3/todor/tests/testthat/test_internal.R | 4 ++++ 7 files changed, 40 insertions(+), 21 deletions(-)
Title: Distance-Weighted Landscape Composition in Buffers Around Point
Locations
Description: Characterises the environment surrounding point locations by
computing land-cover composition within circular buffers directly from
vector polygons, without conversion to a raster grid. For each site and each class it
returns the exact surface area inside the buffer and a distance-decay
weighted "effective" area in which the kernel is integrated over polygon
geometry rather than evaluated at the polygon centroid, avoiding the large
bias the centroid approximation introduces for elongated features passing
close to the site. Polygons may overlap, so class areas are not constrained
to sum to the buffer area. Intended for buffer-based exposure assessment
and fine-scale spatial epidemiology, where the relevant scale is tens of
metres and global land-cover products are too coarse: land-use regression
around air-quality monitors, green space around residential addresses,
vector-surveillance traps, and comparable designs. The classification
dictionary is user-supplied, and point features and d [...truncated...]
Author: Michele Planta [aut, cre]
Maintainer: Michele Planta <micheleplanta@outlook.it>
Diff between bufferscape versions 1.0.3 dated 2026-08-05 and 1.3.2 dated 2026-10-29
DESCRIPTION | 6 - MD5 | 62 ++++++++------ NEWS.md | 165 +++++++++++++++++++++++++++++++++++++++ R/batch.R | 109 +++++++++++++++++++------ R/bufferscape-package.R | 4 R/categories.R | 25 +++++ R/charts.R | 20 ++-- R/data.R | 20 +++- R/landscape.R | 134 +++++++++++++++++-------------- R/maps.R | 156 ++++++++++++++++++++++++++++-------- R/palette.R | 30 ++++--- R/read.R |only R/report.R | 33 +++++++ README.md | 49 ++++++++--- data/mare_categories.rda |binary inst/CITATION | 2 inst/doc/bufferscape.R | 11 ++ inst/doc/bufferscape.Rmd | 17 +++- inst/doc/bufferscape.html | 164 ++++++++++++++++++++------------------ inst/extdata/example_site.gpkg |only inst/extdata/example_site.kml | 6 - man/batch_composition.Rd | 18 ++-- man/buffer_composition.Rd | 20 ++++ man/class_dictionary.Rd | 4 man/class_palette.Rd | 23 +++-- man/mare_categories.Rd | 20 +++- man/plot_group_points.Rd | 2 tests/testthat/test-categories.R | 4 tests/testthat/test-duplicates.R |only tests/testthat/test-formats.R |only tests/testthat/test-maps.R |only tests/testthat/test-palette.R | 31 ++++++- tests/testthat/test-report.R | 29 ++++++ tests/testthat/test-robustness.R |only vignettes/bufferscape.Rmd | 17 +++- 35 files changed, 858 insertions(+), 323 deletions(-)
Title: Generalization of the Convex Hull of a Sample of Points in the
Plane
Description: Computation of the alpha-shape and alpha-convex
hull of a given sample of points in the plane. The concepts of
alpha-shape and alpha-convex hull generalize the definition of
the convex hull of a finite set of points. The programming is
based on the duality between the Voronoi diagram and Delaunay
triangulation. The package also includes a function that
returns the Delaunay mesh of a given sample of points and its
dual Voronoi diagram in one single object.
Author: Beatriz Pateiro-Lopez [aut, cre],
Alberto Rodriguez-Casal [aut]
Maintainer: Beatriz Pateiro-Lopez <beatriz.pateiro@usc.es>
Diff between alphahull versions 2.5 dated 2022-06-16 and 3.0.1 dated 2026-10-29
alphahull-2.5/alphahull/inst/doc/alphahull.pdf |only alphahull-2.5/alphahull/inst/doc/alphahull.rnw |only alphahull-2.5/alphahull/vignettes/alphahull.rnw |only alphahull-3.0.1/alphahull/DESCRIPTION | 26 +- alphahull-3.0.1/alphahull/MD5 | 34 +- alphahull-3.0.1/alphahull/NAMESPACE | 11 alphahull-3.0.1/alphahull/NEWS.md |only alphahull-3.0.1/alphahull/R/areaahulleval.R | 2 alphahull-3.0.1/alphahull/R/delvor.R | 253 ++++++++++++++++----- alphahull-3.0.1/alphahull/R/dummycoor.R | 29 +- alphahull-3.0.1/alphahull/R/plot.delvor.R | 5 alphahull-3.0.1/alphahull/README.md |only alphahull-3.0.1/alphahull/build/vignette.rds |binary alphahull-3.0.1/alphahull/inst/doc/alphahull.R | 160 +++---------- alphahull-3.0.1/alphahull/inst/doc/alphahull.Rmd |only alphahull-3.0.1/alphahull/inst/doc/alphahull.html |only alphahull-3.0.1/alphahull/man/ahull_track.Rd | 44 +-- alphahull-3.0.1/alphahull/man/alphahull-package.Rd | 4 alphahull-3.0.1/alphahull/man/delvor.Rd | 60 +++- alphahull-3.0.1/alphahull/man/dummycoor.Rd | 42 ++- alphahull-3.0.1/alphahull/man/dw_track.Rd | 44 +-- alphahull-3.0.1/alphahull/vignettes/alphahull.Rmd |only 22 files changed, 432 insertions(+), 282 deletions(-)
Title: Zero-Modified Complex 'Tri-Parametric' Pearson Distribution for
Overdispersed Count Data
Description: Provides probability, distribution, quantile and random-generation
functions for the complex three-parameter Pearson distribution and its
zero-inflated extension. Maximum likelihood fitting uses analytic profiling
of the mixing probability, multiple starting points and numerical boundary
diagnostics. The parent family is described in the 2003 study
<doi:10.1007/s00362-002-0134-7>.
Author: Rasheedat Oladoja [aut, cre] ,
Kabir Opeyemi Olorede [aut]
Maintainer: Rasheedat Oladoja <roladoja@ttu.edu>
Diff between zmctp versions 0.1.3 dated 2026-09-20 and 0.1.4 dated 2026-10-29
zmctp-0.1.3/zmctp/R/ctp_fit.R |only zmctp-0.1.3/zmctp/R/dctp.R |only zmctp-0.1.3/zmctp/R/dzictp.R |only zmctp-0.1.3/zmctp/R/pctp.R |only zmctp-0.1.3/zmctp/R/pzictp.R |only zmctp-0.1.3/zmctp/R/qctp.R |only zmctp-0.1.3/zmctp/R/qzictp.R |only zmctp-0.1.3/zmctp/R/rctp.R |only zmctp-0.1.3/zmctp/R/rzictp.R |only zmctp-0.1.3/zmctp/R/zictp_fit.R |only zmctp-0.1.3/zmctp/man/pctp.Rd |only zmctp-0.1.3/zmctp/man/pzictp.Rd |only zmctp-0.1.3/zmctp/man/qctp.Rd |only zmctp-0.1.3/zmctp/man/qzictp.Rd |only zmctp-0.1.3/zmctp/man/rctp.Rd |only zmctp-0.1.3/zmctp/man/rzictp.Rd |only zmctp-0.1.4/zmctp/DESCRIPTION | 28 zmctp-0.1.4/zmctp/MD5 | 73 zmctp-0.1.4/zmctp/NAMESPACE | 3 zmctp-0.1.4/zmctp/NEWS.md | 31 zmctp-0.1.4/zmctp/R/distributions.R |only zmctp-0.1.4/zmctp/R/fitting.R |only zmctp-0.1.4/zmctp/R/methods.R | 274 +-- zmctp-0.1.4/zmctp/R/moments.R | 264 +-- zmctp-0.1.4/zmctp/R/numerics.R |only zmctp-0.1.4/zmctp/R/plot_ctpfit.R | 252 +-- zmctp-0.1.4/zmctp/R/plot_zictpfit.R | 321 ++-- zmctp-0.1.4/zmctp/R/zmctp-package.R | 7 zmctp-0.1.4/zmctp/README.md | 135 - zmctp-0.1.4/zmctp/build/vignette.rds |binary zmctp-0.1.4/zmctp/inst/CITATION |only zmctp-0.1.4/zmctp/inst/doc/introduction.R | 190 -- zmctp-0.1.4/zmctp/inst/doc/introduction.Rmd | 476 +----- zmctp-0.1.4/zmctp/inst/doc/introduction.html | 1326 ++++++------------ zmctp-0.1.4/zmctp/man/ctp.fit.Rd | 125 - zmctp-0.1.4/zmctp/man/dctp.Rd | 75 - zmctp-0.1.4/zmctp/man/dzictp.Rd | 69 zmctp-0.1.4/zmctp/man/mean_ctp.Rd | 28 zmctp-0.1.4/zmctp/man/mean_zictp.Rd | 36 zmctp-0.1.4/zmctp/man/mode_ctp.Rd | 16 zmctp-0.1.4/zmctp/man/mode_zictp.Rd | 17 zmctp-0.1.4/zmctp/man/zictp.fit.Rd | 54 zmctp-0.1.4/zmctp/man/zmctp-package.Rd | 9 zmctp-0.1.4/zmctp/tests/spelling.R | 6 zmctp-0.1.4/zmctp/tests/testthat/fixtures_pmf.csv |only zmctp-0.1.4/zmctp/tests/testthat/test-distributions.R |only zmctp-0.1.4/zmctp/tests/testthat/test-integration.R |only zmctp-0.1.4/zmctp/tests/testthat/test-moments.R | 182 +- zmctp-0.1.4/zmctp/vignettes/introduction.Rmd | 476 +----- 49 files changed, 1795 insertions(+), 2678 deletions(-)
Title: Miscellaneous Utilities for 'rerddap'
Description: The 'rerddapUtils' package is an 'R' package that is a set of four main
functions designed to work with and extend the 'rerddap' package. These functions includes one for restricting by season,
one for splitting large requests, and two for working with projected datasets. There are also two utility functions
that provide estimates of the size of a proposed 'rerddap::griddap()' request.
Author: Roy Mendelssohn [aut, cre]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddapUtils versions 1.0.2 dated 2026-06-08 and 1.0.3 dated 2026-10-29
DESCRIPTION | 10 - MD5 | 23 +-- NEWS.md | 5 R/griddap_season.R | 2 R/griddap_split.R | 44 +++++- build/vignette.rds |binary inst/agentic-skills |only inst/doc/using-rerddapUtils.R | 12 + inst/doc/using-rerddapUtils.Rmd | 45 ++++-- inst/doc/using-rerddapUtils.html | 276 ++++++++++++++++++++------------------- man/griddap_season.Rd | 2 man/griddap_split.Rd | 1 vignettes/using-rerddapUtils.Rmd | 45 ++++-- 13 files changed, 290 insertions(+), 175 deletions(-)
Title: Publication-Ready Formatting for Statistical Results
Description: Provides tools for converting already-computed statistical results
into consistent, publication-ready character output. Supports p-values,
confidence intervals, correlation coefficients, percentages, test
statistics, and commonly reported effect sizes, with optional confidence
intervals and multiple output styles for selected statistical symbols.
The package emphasizes separation of statistical calculation,
interpretation, and publication formatting so that reporting choices do
not alter the underlying numeric results or inferential decisions.
Author: RJ Ballotti [aut, cre]
Maintainer: RJ Ballotti <rballotti@coastal.edu>
Diff between pubformat versions 0.1.0 dated 2026-10-02 and 0.2.0 dated 2026-10-29
DESCRIPTION | 15 MD5 | 37 NAMESPACE | 7 NEWS.md |only R/format_d.R |only R/format_eta2.R |only R/format_f.R |only R/format_g.R |only R/format_omega2.R |only R/format_partial_eta2.R |only R/format_t.R |only R/utils-test-formatting.R |only README.md | 1199 +++++++++++++++++++----------- inst/doc/pubformat-workflow.R | 216 +++++ inst/doc/pubformat-workflow.Rmd | 397 +++++++++ inst/doc/pubformat-workflow.html | 1139 +++++++++++++++++----------- man/format_d.Rd |only man/format_eta2.Rd |only man/format_f.Rd |only man/format_g.Rd |only man/format_omega2.Rd |only man/format_partial_eta2.Rd |only man/format_t.Rd |only tests/testthat/test-format_d.R |only tests/testthat/test-format_eta2.R |only tests/testthat/test-format_f.R |only tests/testthat/test-format_g.R |only tests/testthat/test-format_omega2.R |only tests/testthat/test-format_partial_eta2.R |only tests/testthat/test-format_t.R |only vignettes/pubformat-workflow.Rmd | 397 +++++++++ 31 files changed, 2539 insertions(+), 868 deletions(-)
Title: R Wrapper for 'pikchr' (PIC) Diagram Language
Description: An 'R' interface to 'pikchr' (<https://pikchr.org>, pronounced "picture"), a 'PIC'-like markup language for creating diagrams within technical documentation. Originally developed by Brian Kernighan, 'PIC' has been adapted into 'pikchr' by D. Richard Hipp, the creator of 'SQLite'. 'pikchr' is designed to be embedded in fenced code blocks of Markdown or other documentation markup languages, making it ideal for generating diagrams in text-based formats. This package allows R users to seamlessly integrate the descriptive syntax of 'pikchr' for diagram creation directly within the 'R' environment.
Author: Andre Leite [aut, cre] ,
Hugo Vasconcelos [aut] ,
Diogo Bezerra [aut] ,
Marcos Wasiliew [aut] ,
Carlos Amorim [aut] ,
Julia Nascimento Barreto [aut] ,
Richard Hipp [ctb],
Brian Kernighan [ctb]
Maintainer: Andre Leite <leite@castlab.org>
Diff between pikchr versions 1.1.1 dated 2026-06-14 and 1.1.2 dated 2026-10-29
DESCRIPTION | 41 +++++++++++------- MD5 | 18 +++---- NAMESPACE | 2 NEWS.md | 6 ++ R/pikchrWrappers.R | 4 - inst/doc/Examples.html | 38 ++++++++-------- inst/doc/userman.html | 104 +++++++++++++++++++++++----------------------- man/figures/logo.png |binary man/figures/pikchrHex.svg | 58 ++++++++++++------------- src/pikchr.c | 34 +++++++++------ 10 files changed, 164 insertions(+), 141 deletions(-)
Title: Meta-Analysis of Correlated Genetic Association Studies
Description: The main function performs meta-analysis of genetic association study summary statistics that may be correlated due to cryptic relatedness or other confounders, generalizing inverse variance weighted methods. The function that estimates the correlation structure is also provided standalone. Another key innovation, the estimation of the correlation parameter from the median product of correlated standard normal variables, is provided, as well as a complete set of functions for their underlying distribution: density, cumulative, quantile, and random deviates. Described in Tu and Ochoa (2026) <doi:10.1016/j.xhgg.2026.100657>.
Author: Alejandro Ochoa [aut, cre] ,
Tiffany Tu [aut]
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>
Diff between metalcor versions 1.0.2 dated 2026-09-14 and 1.0.5 dated 2026-10-29
DESCRIPTION | 10 +- MD5 | 24 +++--- NAMESPACE | 1 NEWS.md | 12 +++ R/metalcor-package.R | 9 ++ R/metalcor.R | 94 ++++++++++++++++++++------ inst/doc/metalcor.R | 13 ++- inst/doc/metalcor.Rmd | 16 ++-- inst/doc/metalcor.html | 143 ++++++++++++++++++++--------------------- man/metalcor-package.Rd | 9 ++ man/metalcor.Rd | 37 ++++++++-- tests/testthat/test-metalcor.R | 138 ++++++++++++++++++++++++++++++++++++++- vignettes/metalcor.Rmd | 16 ++-- 13 files changed, 375 insertions(+), 147 deletions(-)
Title: Publication-Quality 'ggplot2' Themes
Description: Complete themes and functions for publication-quality 'ggplot2'
visualisation.
Author: David Hodge [aut, cre, cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggrefine versions 0.5.0 dated 2026-07-07 and 1.0.0 dated 2026-10-29
ggrefine-0.5.0/ggrefine/R/refine.R |only ggrefine-0.5.0/ggrefine/man/classic_drift.Rd |only ggrefine-0.5.0/ggrefine/man/classic_drop.Rd |only ggrefine-0.5.0/ggrefine/man/classic_flow.Rd |only ggrefine-0.5.0/ggrefine/man/classic_keep.Rd |only ggrefine-0.5.0/ggrefine/man/minimal_drift.Rd |only ggrefine-0.5.0/ggrefine/man/minimal_drop.Rd |only ggrefine-0.5.0/ggrefine/man/minimal_flow.Rd |only ggrefine-0.5.0/ggrefine/man/minimal_keep.Rd |only ggrefine-0.5.0/ggrefine/man/modern_drift.Rd |only ggrefine-0.5.0/ggrefine/man/modern_drop.Rd |only ggrefine-0.5.0/ggrefine/man/modern_flow.Rd |only ggrefine-0.5.0/ggrefine/man/modern_keep.Rd |only ggrefine-0.5.0/ggrefine/man/theme_dark.Rd |only ggrefine-0.5.0/ggrefine/man/theme_ggplot2.Rd |only ggrefine-0.5.0/ggrefine/man/theme_grey.Rd |only ggrefine-0.5.0/ggrefine/man/theme_light.Rd |only ggrefine-0.5.0/ggrefine/man/void_drift.Rd |only ggrefine-0.5.0/ggrefine/man/void_drop.Rd |only ggrefine-0.5.0/ggrefine/man/void_flow.Rd |only ggrefine-0.5.0/ggrefine/man/void_keep.Rd |only ggrefine-1.0.0/ggrefine/DESCRIPTION | 17 ggrefine-1.0.0/ggrefine/MD5 | 97 ggrefine-1.0.0/ggrefine/NAMESPACE | 47 ggrefine-1.0.0/ggrefine/NEWS.md | 15 ggrefine-1.0.0/ggrefine/R/ggrefine.R |only ggrefine-1.0.0/ggrefine/R/globals.R |only ggrefine-1.0.0/ggrefine/R/refine-axis-grid.R |only ggrefine-1.0.0/ggrefine/R/refine-legend.R |only ggrefine-1.0.0/ggrefine/R/scale-blend.R |only ggrefine-1.0.0/ggrefine/R/scale-contrast.R |only ggrefine-1.0.0/ggrefine/R/scale-zero.R |only ggrefine-1.0.0/ggrefine/R/theme.R | 1787 +++++----- ggrefine-1.0.0/ggrefine/R/update-theme.R |only ggrefine-1.0.0/ggrefine/README.md | 234 - ggrefine-1.0.0/ggrefine/inst/WORDLIST | 6 ggrefine-1.0.0/ggrefine/man/aes_colour_blend.Rd |only ggrefine-1.0.0/ggrefine/man/aes_colour_contrast.Rd |only ggrefine-1.0.0/ggrefine/man/aes_colour_panel.Rd |only ggrefine-1.0.0/ggrefine/man/aes_fill_blend.Rd |only ggrefine-1.0.0/ggrefine/man/figures/README-example-1.png |binary ggrefine-1.0.0/ggrefine/man/figures/README-example-2.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-2-1.png |binary ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-2-2.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-2-3.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-2-4.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-3-1.png |binary ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-3-2.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-3-3.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-3-4.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-3-5.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-3-6.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-3-7.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-3-8.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-3-9.png |only ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-4-1.png |binary ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-5-1.png |binary ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-6-1.png |binary ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-7-1.png |binary ggrefine-1.0.0/ggrefine/man/figures/README-unnamed-chunk-8-1.png |only ggrefine-1.0.0/ggrefine/man/ggrefine.Rd |only ggrefine-1.0.0/ggrefine/man/refine_axis_grid.Rd |only ggrefine-1.0.0/ggrefine/man/refine_darks.Rd |only ggrefine-1.0.0/ggrefine/man/refine_greys.Rd |only ggrefine-1.0.0/ggrefine/man/refine_legend.Rd |only ggrefine-1.0.0/ggrefine/man/refine_lights.Rd |only ggrefine-1.0.0/ggrefine/man/scale_colour_blend_binned.Rd |only ggrefine-1.0.0/ggrefine/man/scale_colour_blend_continuous.Rd |only ggrefine-1.0.0/ggrefine/man/scale_colour_blend_discrete.Rd |only ggrefine-1.0.0/ggrefine/man/scale_fill_blend_binned.Rd |only ggrefine-1.0.0/ggrefine/man/scale_fill_blend_continuous.Rd |only ggrefine-1.0.0/ggrefine/man/scale_fill_blend_discrete.Rd |only ggrefine-1.0.0/ggrefine/man/scale_x_zero.Rd |only ggrefine-1.0.0/ggrefine/man/scale_y_zero.Rd |only ggrefine-1.0.0/ggrefine/man/set_darks.Rd |only ggrefine-1.0.0/ggrefine/man/set_greys.Rd |only ggrefine-1.0.0/ggrefine/man/set_lights.Rd |only ggrefine-1.0.0/ggrefine/man/theme_darks.Rd |only ggrefine-1.0.0/ggrefine/man/theme_greys.Rd |only ggrefine-1.0.0/ggrefine/man/theme_lights.Rd |only ggrefine-1.0.0/ggrefine/man/update_darks.Rd |only ggrefine-1.0.0/ggrefine/man/update_greys.Rd |only ggrefine-1.0.0/ggrefine/man/update_lights.Rd |only ggrefine-1.0.0/ggrefine/man/update_palette.Rd |only ggrefine-1.0.0/ggrefine/man/update_panel_size.Rd |only 85 files changed, 1213 insertions(+), 990 deletions(-)
Title: Generalized Competing Event Models with Lunn-McNeil Testing
Description: Fits generalized competing event (GCE) models and estimates
covariate effects on omega-plus, the ratio of the hazard for an
event of interest to the hazard for a competing event, on both the
cause-specific (Cox) and subdistribution (Fine-Gray) hazard scales.
Confidence intervals and p-values are obtained from the Lunn-McNeil (1995)
stacked (augmented) data approach. The package builds GCE risk scores from
the model linear predictor, identifies risk-score cutpoints that maximize
the separation in omega-plus between groups, and produces cumulative
incidence ("alligator") plots by risk group and calibration plots of
predicted versus observed omega-plus. It also compares covariate effects
across the primary, competing, and total (composite) events, and estimates
covariate effects on the ratio of cumulative incidence functions (a
cumulative-incidence-scale GCE model). Methods follow Carmona et al. (2014)
<doi:10.1016/j.ijrobp.2014.03.047>, Mell et al. (2024)
<doi:10.1016/j.eururo.2 [...truncated...]
Author: Loren Mell [aut, cre],
Morten Overgaard [ctb] )
Maintainer: Loren Mell <lmell@ucsd.edu>
Diff between gcemod versions 0.3.0 dated 2026-09-24 and 0.3.1 dated 2026-10-29
DESCRIPTION | 16 ++- MD5 | 26 +++-- NAMESPACE | 1 NEWS.md | 50 ++++++++++ R/gcecif.R | 198 ++++++++++++++++++++++++++----------------- R/gcefg.R | 13 ++ R/lunnmcneil.R | 49 ++++++++++ R/omegatime.R |only man/gce_omegatime.Rd |only man/gcecif.Rd | 82 ++++++++++------- man/gcefg.Rd | 22 ++++ man/gcemod-package.Rd | 5 + man/lunnmcneil.Rd | 14 +++ tests/testthat/test-gcecif.R | 11 ++ tests/testthat/test-gcefg.R | 36 +++++++ 15 files changed, 389 insertions(+), 134 deletions(-)
Title: Predict Moonlight, Sunlight, and/or Twilight Ground Illuminance
Description: Predicts ground-level illuminance from moonlight, sunlight, and twilight for specified locations and time periods. The package is intended for field studies in ecology and behavior where natural light levels are used as predictor variables. See Poon et al. (2024) <doi:10.1111/2041-210X.14299>. Calculations use astronomical quantities from 'suncalc' and published illuminance models, including Austin et al. (1976) <doi:10.2307/2402251> and Seidelmann (1992) <ISBN:0935702687>.
Author: Lok Poon [aut, cre] ,
Ian T. Jenks [aut],
William G. R. Crampton [aut]
Maintainer: Lok Poon <poonchiulok@gmail.com>
Diff between MoonShineR versions 1.1.0 dated 2026-06-17 and 1.2.0 dated 2026-10-29
DESCRIPTION | 26 ++++++++++++---- MD5 | 15 +++++---- R/plot_lux.R | 53 ++++++++++++++++++---------------- R/predict_lux.R | 71 +++++++++++++++++++++++----------------------- README.md | 6 ++- build |only man/MoonShineR-package.Rd | 14 +++++++++ man/plot_lux.Rd | 41 ++++++++++++-------------- man/predict_lux.Rd | 71 +++++++++++++++++++++++----------------------- 9 files changed, 166 insertions(+), 131 deletions(-)
Title: User-Friendly 'shiny' App for Bayesian Species Distribution
Models
Description: A user-friendly 'shiny' application for Bayesian machine
learning analysis of marine species distributions. GLOSSA (Global
Ocean Species Spatio-temporal Analysis) uses Bayesian Additive
Regression Trees (BART; Chipman, George, and McCulloch (2010)
<doi:10.1214/09-AOAS285>) to model species distributions with
intuitive workflows for data upload, processing, model fitting, and
result visualization. It supports presence-absence and presence-only
data (with pseudo-absence generation), spatial thinning,
cross-validation, and scenario-based projections. GLOSSA is designed
to facilitate ecological research by providing easy-to-use tools for
analyzing and visualizing marine species distributions across
different spatial and temporal scales. Optionally, pseudo-absences can
be generated within the environmental space using the external package
'flexsdm' (not on CRAN), which can be downloaded from
<https://github.com/sjevelazco/flexsdm>; this functionality is used
conditionally when a [...truncated...]
Author: Jorge Mestre-Tomas [aut, cre] ,
Alba Fuster-Alonso [aut]
Maintainer: Jorge Mestre-Tomas <jorge.mestre.tomas@csic.es>
Diff between glossa versions 1.2.4 dated 2025-09-19 and 1.2.5 dated 2026-10-29
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS.md | 15 +++++++++++++++ R/bart_functions.R | 3 ++- R/read_validate_files.R | 13 ++++++++++--- build/partial.rdb |binary inst/CITATION | 11 +++++++---- inst/app/Rmd/how_to_cite.Rmd | 4 ++-- inst/app/global.R | 1 - tests/testthat/test-cross_validate_model.R | 4 ++-- 10 files changed, 52 insertions(+), 27 deletions(-)
Title: Access Brazilian National Treasury Open Data APIs
Description: Provides a unified interface to access open data from the
Brazilian National Treasury ('Tesouro Nacional') and related government
APIs. Covers six data sources: 'SICONFI'
<https://apidatalake.tesouro.gov.br/docs/siconfi/> for fiscal reports
('RREO', 'RGF', 'DCA', 'MSC') and entity information; 'CUSTOS'
<https://apidatalake.tesouro.gov.br/docs/custos/> for federal
government cost data; 'SADIPEM'
<https://apidatalake.tesouro.gov.br/docs/sadipem/> for public debt and
credit operations; 'Transferencias Constitucionais'
<https://apiapex.tesouro.gov.br/aria/v1/transferencias_constitucionais/docs>
for constitutional transfers to states and municipalities; 'SIORG'
<https://estruturaorganizacional.dados.gov.br> for federal
organizational structure; and 'SIOPE' ('FNDE'/'MEC') for education
spending data. Features automatic pagination, in-memory caching,
retry logic, and tidy output.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Tiago Pereira [aut],
Fernando Barbalho [aut],
Julia Nascimento Barreto [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between tesouror versions 0.3.1 dated 2026-09-11 and 0.3.2 dated 2026-10-29
DESCRIPTION | 41 ++-- MD5 | 26 +- NEWS.md | 40 ++++ R/rreo_tidy.R | 71 ++++++- inst/WORDLIST | 313 ++++++++++++++++---------------- inst/doc/rreo-longitudinal.Rmd | 63 ++++-- inst/doc/rreo-longitudinal.html | 67 ++++-- inst/doc/transferencias_pernambuco.html | 4 inst/extdata/rreo_layout.csv | 39 +++ man/rreo_layout.Rd | 10 - man/tesouror-package.Rd | 13 - man/tidy_rreo.Rd | 38 +++ tests/testthat/test-rreo_tidy.R | 141 ++++++++++++++ vignettes/rreo-longitudinal.Rmd | 63 ++++-- 14 files changed, 661 insertions(+), 268 deletions(-)
Title: Radiocarbon Equations
Description: Provides functions for the calibration of radiocarbon dates, as well as options to calculate different radiocarbon-related timescales (cal BP, cal BC/AD, C14 age, F14C, pMC, D14C) and estimating the effects of contamination or local reservoir offsets (Reimer and Reimer 2001 <doi:10.1017/S0033822200038339>). Supporting publication: Blaauw, M., Reimer, P.J., 2026. An open-source toolkit for radiocarbon dating and calibration. Radiocarbon <doi:10.1017/RDC.2026.10221>. The methods follow long-established recommendations such as Stuiver and Polach (1977) <doi:10.1017/S0033822200003672> and Reimer et al. (2004) <doi:10.1017/S0033822200033154>. This package uses the calibration curves from the data package 'rintcal'.
Author: Maarten Blaauw [aut, cre] ,
Paula Reimer [ctb] ,
Vegard Martinsen [ctb]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rice versions 2.3.0 dated 2026-08-19 and 2.4.0 dated 2026-10-29
rice-2.3.0/rice/R/shells.R |only rice-2.4.0/rice/DESCRIPTION | 10 rice-2.4.0/rice/MD5 | 41 +- rice-2.4.0/rice/NAMESPACE | 5 rice-2.4.0/rice/NEWS.md | 7 rice-2.4.0/rice/R/calibrate.R | 21 - rice-2.4.0/rice/R/data.R |only rice-2.4.0/rice/R/globals.R |only rice-2.4.0/rice/R/marine.R | 16 - rice-2.4.0/rice/R/plots.R | 4 rice-2.4.0/rice/R/rice-package.R | 2 rice-2.4.0/rice/R/rice.R | 439 ++++++++++++++++++++++++++++++- rice-2.4.0/rice/R/sets.R | 6 rice-2.4.0/rice/R/sources.R | 8 rice-2.4.0/rice/R/timescales.R | 55 +++ rice-2.4.0/rice/data/elements.rda |only rice-2.4.0/rice/inst/doc/rice.R | 8 rice-2.4.0/rice/inst/doc/rice.Rmd | 16 - rice-2.4.0/rice/inst/doc/rice.html | 388 ++++++++++++++------------- rice-2.4.0/rice/man/D14C_decaycorrect.Rd |only rice-2.4.0/rice/man/F14C_decaycorrect.Rd |only rice-2.4.0/rice/man/atom.Rd |only rice-2.4.0/rice/man/decay_series.Rd |only rice-2.4.0/rice/man/elements.Rd |only rice-2.4.0/rice/man/shells.Rd | 2 rice-2.4.0/rice/vignettes/rice.Rmd | 16 - 26 files changed, 798 insertions(+), 246 deletions(-)
Title: Quantile-Based Estimators
Description: Quantile-based estimators (Q-estimators) fit any parametric
distribution through its quantile function, by minimizing the integrated
loss of quantile regression. They are usually more robust than maximum
likelihood estimators, and allow for censored and truncated data. The
package implements user-defined quantile functions, built-in families
(normal, gamma, continuous Poisson, uniform), linear models and
proportional hazards models. The method is described in Sottile and
Frumento (2022) <doi:10.1016/j.csda.2022.107471>.
Author: Gianluca Sottile [aut, cre] ,
Paolo Frumento [aut]
Maintainer: Gianluca Sottile <gianluca.sottile@unipa.it>
Diff between Qest versions 1.0.2 dated 2025-07-25 and 2.0.0 dated 2026-10-29
Qest-1.0.2/Qest/R/Qcoxph.r |only Qest-1.0.2/Qest/R/Qcoxph_S3methods.r |only Qest-1.0.2/Qest/R/Qcoxph_aux.r |only Qest-1.0.2/Qest/R/Qcoxph_covar_and_loss.R |only Qest-1.0.2/Qest/R/Qest_S3methods.R |only Qest-1.0.2/Qest/R/Qest_aux.R |only Qest-1.0.2/Qest/R/Qest_covar_and_loss.R |only Qest-1.0.2/Qest/R/Qest_ee.R |only Qest-1.0.2/Qest/R/Qlm_S3methods.R |only Qest-1.0.2/Qest/R/Qlm_aux.R |only Qest-1.0.2/Qest/R/Qlm_covar_and_loss.R |only Qest-1.0.2/Qest/R/Qlm_ee.R |only Qest-1.0.2/Qest/R/auxiliary.R |only Qest-1.0.2/Qest/R/familyGamma.r |only Qest-1.0.2/Qest/R/familyNormal.r |only Qest-1.0.2/Qest/R/familyPoisson.r |only Qest-1.0.2/Qest/R/familyUniform.r |only Qest-1.0.2/Qest/man/Qcoxph.control.Rd |only Qest-1.0.2/Qest/man/Qest-internal.rd |only Qest-1.0.2/Qest/man/Qest.rd |only Qest-1.0.2/Qest/man/Qfamily.rd |only Qest-1.0.2/Qest/man/Qlm.fit.Rd |only Qest-1.0.2/Qest/man/wtrunc.rd |only Qest-1.0.2/Qest/src |only Qest-2.0.0/Qest/DESCRIPTION | 44 +- Qest-2.0.0/Qest/MD5 | 94 +++--- Qest-2.0.0/Qest/NAMESPACE | 81 ++--- Qest-2.0.0/Qest/NEWS.md |only Qest-2.0.0/Qest/R/Qcoxph.R |only Qest-2.0.0/Qest/R/Qcoxph_ee.R | 106 ++++++ Qest-2.0.0/Qest/R/Qcoxph_methods.R |only Qest-2.0.0/Qest/R/Qest-package.R |only Qest-2.0.0/Qest/R/Qest.R | 468 ++++++++++++++++++++---------- Qest-2.0.0/Qest/R/Qfamily.R |only Qest-2.0.0/Qest/R/Qlm.R | 351 ++++++++-------------- Qest-2.0.0/Qest/R/Qlm_engine.R |only Qest-2.0.0/Qest/R/engine.R |only Qest-2.0.0/Qest/R/family_gamma.R |only Qest-2.0.0/Qest/R/family_norm.R |only Qest-2.0.0/Qest/R/family_pois.R |only Qest-2.0.0/Qest/R/family_unif.R |only Qest-2.0.0/Qest/R/methods.R |only Qest-2.0.0/Qest/R/solver.R |only Qest-2.0.0/Qest/R/start.R |only Qest-2.0.0/Qest/R/tau.R |only Qest-2.0.0/Qest/R/utils.R |only Qest-2.0.0/Qest/README.md |only Qest-2.0.0/Qest/build/partial.rdb |binary Qest-2.0.0/Qest/build/vignette.rds |only Qest-2.0.0/Qest/inst |only Qest-2.0.0/Qest/man/Qcoxph.Rd | 172 +++++------ Qest-2.0.0/Qest/man/Qest-package.Rd | 67 ++-- Qest-2.0.0/Qest/man/Qest.Rd |only Qest-2.0.0/Qest/man/Qest.control.Rd | 70 ++-- Qest-2.0.0/Qest/man/Qfamily.Rd |only Qest-2.0.0/Qest/man/Qlm.Rd | 154 +++++---- Qest-2.0.0/Qest/man/basehaz.Qcoxph.Rd |only Qest-2.0.0/Qest/man/invQ.Rd | 81 +---- Qest-2.0.0/Qest/man/plot.Qest.Rd |only Qest-2.0.0/Qest/man/predict.Qcoxph.Rd |only Qest-2.0.0/Qest/man/predict.Qest.Rd |only Qest-2.0.0/Qest/man/predict.Qlm.Rd |only Qest-2.0.0/Qest/man/residuals.Qcoxph.Rd |only Qest-2.0.0/Qest/man/summary.Qcoxph.Rd |only Qest-2.0.0/Qest/man/summary.Qest.Rd | 100 +++--- Qest-2.0.0/Qest/man/survfit.Qcoxph.Rd |only Qest-2.0.0/Qest/man/wtrunc.Rd |only Qest-2.0.0/Qest/tests |only Qest-2.0.0/Qest/vignettes |only 69 files changed, 1012 insertions(+), 776 deletions(-)
Title: Automatic Phenotyping of Electronic Health Record at Visit
Resolution
Description: Using Electronic Health Record (EHR) is difficult because most of the time the true characteristic of the patient is not available. Instead we can retrieve the International Classification of Disease code related to the disease of interest or we can count the occurrence of the Unified Medical Language System. None of them is the true phenotype which needs chart review to identify. However chart review is time consuming and costly. 'PheVis' is an algorithm which is phenotyping (i.e identify a characteristic) at the visit level in an unsupervised fashion. It can be used for chronic or acute diseases. An example of how to use 'PheVis' is available in the vignette. Basically there are two functions that are to be used: `train_phevis()` which trains the algorithm and `test_phevis()` which get the predicted probabilities. The detailed method is described in Ferté et al. (2021) <doi:10.1016/j.jbi.2021.103746>.
Author: Thomas Ferte [aut, cre],
Boris P. Hejblum [aut]
Maintainer: Thomas Ferte <thomas.ferte@u-bordeaux.fr>
Diff between PheVis versions 1.0.4 dated 2023-10-20 and 1.0.5 dated 2026-10-29
DESCRIPTION | 16 MD5 | 126 +-- NAMESPACE | 49 - NEWS.md | 41 - R/PheVis-package.R | 22 R/RcppExports.R | 34 R/boot_df.R | 76 - R/build_qantsur.R | 38 R/build_quali.R | 32 R/check_arg_test_phevis.R | 96 +- R/check_arg_train_phevis.R | 170 ++-- R/cum_lag.R | 30 R/data_perf.R | 18 R/data_phevis.R | 18 R/fct_surrogate_quanti.R | 204 ++--- R/ggindividual_plot.R | 162 ++-- R/matrix_exp_smooth.R | 76 - R/noising.R | 46 - R/norm_var.R | 18 R/phenorm_longit_fit.R | 226 ++--- R/phenorm_longit_simpl.R | 152 +-- R/pred_lme4model.R | 76 - R/pretty_cv.glmnet.R | 76 - R/roll_time_sum.R | 120 +-- R/rolling_var.R | 86 +- R/safe_selection.R | 136 +-- R/sur_exp_smooth.R | 90 +- R/test_phevis.R | 260 +++--- R/train_phevis.R | 330 ++++---- README.md | 8 build/partial.rdb |binary build/vignette.rds |binary inst/doc/TutoPheVis.R | 200 ++--- inst/doc/TutoPheVis.Rmd | 356 ++++---- inst/doc/TutoPheVis.html | 1307 ++++++++++++++++----------------- man/PheVis-package.Rd | 40 - man/boot_df.Rd | 54 - man/build_qantsur.Rd | 42 - man/build_quali.Rd | 42 - man/check_arg_test_phevis.Rd | 74 - man/check_arg_train_phevis.Rd | 110 +- man/cum_lag.Rd | 38 man/data_perf.Rd | 32 man/data_phevis.Rd | 32 man/expcorrectC.Rd | 48 - man/fct_surrogate_quanti.Rd | 98 +- man/ggindividual_plot.Rd | 60 - man/matrix_exp_smooth.Rd | 50 - man/noising.Rd | 38 man/norm_var.Rd | 34 man/phenorm_longit_fit.Rd | 104 +- man/phenorm_longit_simpl.Rd | 92 +- man/pred_lme4model.Rd | 42 - man/pretty_cv.glmnet.Rd | 74 - man/roll_time_sum.Rd | 80 +- man/rolling_var.Rd | 46 - man/safe_selection.Rd | 90 +- man/sur_exp_smooth.Rd | 50 - man/test_phevis.Rd | 170 ++-- man/train_phevis.Rd | 154 +-- tests/testthat.R | 8 tests/testthat/test-roll_time_sum.R | 30 tests/testthat/test-traintest_phevis.R | 108 +- vignettes/TutoPheVis.Rmd | 356 ++++---- 64 files changed, 3450 insertions(+), 3441 deletions(-)
Title: Machine Learning Models for Soil Properties from Spectroscopy
Description: Soil spectroscopy studies use many different combinations of
spectral preprocessing and calibration methods, which makes results
difficult to compare or generalize across studies. For visible and
near-infrared (VNIR) spectra (350-2500 nm), runs every combination of
preprocessing and calibration methods on identical repeated calibration
and validation splits. The 26 preprocessing methods are raw reflectance,
standard normal variate, pseudo-absorbance, and 23 Savitzky-Golay
smoothers, first derivatives, and second derivatives with linear,
quadratic, or cubic polynomials and 3- to 11-point windows, excluding
settings that give mathematically identical filters. The calibration
methods are principal component regression (PCR), partial least squares
regression (PLSR), least absolute shrinkage and selection operator
(LASSO), 'Cubist', and random forest. Model complexity is tuned by
cross-validation within each calibration set, and combinations are ranked
by the coefficient of determination (R [...truncated...]
Author: Pengyuan Chen [aut],
Christopher Clingensmith [aut],
Chenglong Ye [aut],
Sabine Grunwald [aut],
Katsutoshi Mizuta [aut, cre]
Maintainer: Katsutoshi Mizuta <toshi.m@uky.edu>
Diff between MLSP versions 0.1.0 dated 2025-10-08 and 0.2.0 dated 2026-10-29
MLSP-0.1.0/MLSP/R/sg.R |only MLSP-0.2.0/MLSP/DESCRIPTION | 70 +- MLSP-0.2.0/MLSP/MD5 | 39 + MLSP-0.2.0/MLSP/NAMESPACE | 48 - MLSP-0.2.0/MLSP/NEWS.md |only MLSP-0.2.0/MLSP/R/MLSP-package.R |only MLSP-0.2.0/MLSP/R/colsMean.R | 73 +-- MLSP-0.2.0/MLSP/R/merge.R | 179 +++---- MLSP-0.2.0/MLSP/R/ml_f.R | 246 +++++++--- MLSP-0.2.0/MLSP/R/ml_models.R | 558 ++++++++--------------- MLSP-0.2.0/MLSP/R/msd.comp.R | 129 ++--- MLSP-0.2.0/MLSP/R/preprocess.R |only MLSP-0.2.0/MLSP/R/results.R | 116 ++-- MLSP-0.2.0/MLSP/build |only MLSP-0.2.0/MLSP/man/MLSP-package.Rd |only MLSP-0.2.0/MLSP/man/merge_of_lab_and_spectrum.Rd | 121 ++-- MLSP-0.2.0/MLSP/man/ml_f.Rd | 183 ++++--- MLSP-0.2.0/MLSP/man/msd.comp.Rd | 86 +-- MLSP-0.2.0/MLSP/man/preprocess_methods.Rd |only MLSP-0.2.0/MLSP/man/raw.Rd | 64 +- MLSP-0.2.0/MLSP/man/results.Rd |only MLSP-0.2.0/MLSP/man/soil_preprocess.Rd | 238 +++++---- MLSP-0.2.0/MLSP/man/spectral_preprocess.Rd |only MLSP-0.2.0/MLSP/tests |only 24 files changed, 1116 insertions(+), 1034 deletions(-)
Title: Make PX-Files in R
Description: Create PX-files from scratch or read and modify existing ones.
Includes a function for every PX keyword, making metadata manipulation
simple and human-readable.
Author: Johan Ejstrud [cre, aut],
Lars Pedersen [aut],
Statistics Greenland [cph]
Maintainer: Johan Ejstrud <johan@ejstrud.com>
Diff between pxmake versions 0.21.0 dated 2026-07-15 and 0.22.0 dated 2026-10-29
pxmake-0.21.0/pxmake/man/px_micro.Rd |only pxmake-0.21.0/pxmake/man/px_save.Rd |only pxmake-0.21.0/pxmake/man/px_validate.Rd |only pxmake-0.22.0/pxmake/DESCRIPTION | 14 - pxmake-0.22.0/pxmake/MD5 | 74 +++++----- pxmake-0.22.0/pxmake/NAMESPACE | 3 pxmake-0.22.0/pxmake/NEWS.md | 15 ++ pxmake-0.22.0/pxmake/R/documentation.R | 15 +- pxmake-0.22.0/pxmake/R/metadata_df.R | 10 - pxmake-0.22.0/pxmake/R/micro.R | 39 +++-- pxmake-0.22.0/pxmake/R/modify_helpers.R | 2 pxmake-0.22.0/pxmake/R/modify_languages.R | 24 ++- pxmake-0.22.0/pxmake/R/modify_variable1.R | 4 pxmake-0.22.0/pxmake/R/note_warning_error.R | 29 +-- pxmake-0.22.0/pxmake/R/px.R | 24 ++- pxmake-0.22.0/pxmake/README.md | 24 ++- pxmake-0.22.0/pxmake/build/vignette.rds |binary pxmake-0.22.0/pxmake/inst/doc/first-px-file.html | 2 pxmake-0.22.0/pxmake/inst/doc/micro-files.R | 3 pxmake-0.22.0/pxmake/inst/doc/micro-files.Rmd | 5 pxmake-0.22.0/pxmake/inst/doc/micro-files.html | 2 pxmake-0.22.0/pxmake/man/modify_languages_in_table.Rd | 11 + pxmake-0.22.0/pxmake/man/px.Rd | 6 pxmake-0.22.0/pxmake/man/px_micro.px.Rd |only pxmake-0.22.0/pxmake/man/px_save.px.Rd |only pxmake-0.22.0/pxmake/man/px_validate.px.Rd |only pxmake-0.22.0/pxmake/man/px_values.px.Rd | 6 pxmake-0.22.0/pxmake/man/save_px_as_xlsx.Rd | 2 pxmake-0.22.0/pxmake/man/validate_px_arguments.Rd | 6 pxmake-0.22.0/pxmake/man/validate_px_save_arguments.Rd | 2 pxmake-0.22.0/pxmake/tests/testthat/test-00-helper_functions.R | 10 + pxmake-0.22.0/pxmake/tests/testthat/test-00-note_warning_error.R | 4 pxmake-0.22.0/pxmake/tests/testthat/test-00-validate.R | 4 pxmake-0.22.0/pxmake/tests/testthat/test-49-px.R | 2 pxmake-0.22.0/pxmake/tests/testthat/test-50-px-urls.R | 1 pxmake-0.22.0/pxmake/tests/testthat/test-51-pxsave.R | 10 + pxmake-0.22.0/pxmake/tests/testthat/test-55-modify-cells2.R | 15 ++ pxmake-0.22.0/pxmake/tests/testthat/test-55-modify-variables1.R | 10 + pxmake-0.22.0/pxmake/tests/testthat/test-56-modify-languages.R | 33 ++++ pxmake-0.22.0/pxmake/tests/testthat/test-91-pxjob-micromake.R | 56 +++++++ pxmake-0.22.0/pxmake/vignettes/micro-files.Rmd | 5 41 files changed, 349 insertions(+), 123 deletions(-)
Title: Flexible Bayes Factor Testing of Scientific Expectations
Description: Implementation of default Bayes factors
for testing statistical hypotheses under various statistical models. The package is
intended for applied quantitative researchers in the
social and behavioral sciences, medical research,
and related fields. The Bayes factor tests can be
executed for statistical models such as
univariate and multivariate normal linear models,
correlation analysis, generalized linear models, special cases of
linear mixed models, survival models, relational
event models. Parameters that can be tested are
location parameters (e.g., group means, regression coefficients),
variances (e.g., group variances), and measures of
association (e.g,. polychoric/polyserial/biserial/tetrachoric/product
moments correlations), among others.
Relevant references on the methodology The statistical underpinnings are
described in
O'Hagan (1995) <DOI:10.1111/j.2517-6161.1995.tb02017.x>,
Mulder and Xin (2022) <DOI:10.1080/00273171.2021.1904809>,
Mulder and Gelissen (2019) <D [...truncated...]
Author: Joris Mulder [aut, cre],
Caspar van Lissa [aut, ctb],
Donald R. Williams [aut, ctb],
Xin Gu [aut, ctb],
Anton Olsson-Collentine [aut, ctb],
Florian Boeing-Messing [aut, ctb],
Jean-Paul Fox [aut, ctb],
Janosch Menke [ctb],
Robbie van Aert [ctb],
Barry [...truncated...]
Maintainer: Joris Mulder <j.mulder3@tilburguniversity.edu>
Diff between BFpack versions 1.6.2 dated 2026-10-28 and 1.6.3 dated 2026-10-29
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- inst/doc/vignette_BFpack_correlation.html | 4 ++-- inst/doc/vignette_BFpack_ergm.html | 4 ++-- inst/doc/vignette_BFpack_general.html | 4 ++-- inst/doc/vignette_BFpack_regression.html | 4 ++-- src/bct_mixedordinal.f90 | 12 ++++++++++-- src/bct_prior.f90 | 2 +- 8 files changed, 29 insertions(+), 21 deletions(-)
Title: REDCap Metadata Casting and Castellated Data Handling
Description: Casting metadata for REDCap database creation and handling of
castellated data using repeated instruments and longitudinal projects in
'REDCap'. Keeps a focused data export approach, by allowing to only export
required data from the database. Also for casting new REDCap databases based
on datasets from other sources.
Originally forked from the R part of 'REDCapRITS' by Paul Egeler.
See <https://github.com/pegeler/REDCapRITS>.
'REDCap' (Research Electronic Data Capture) is a secure, web-based software
platform designed to support data capture for research studies, providing
1) an intuitive interface for validated data capture; 2) audit trails for
tracking data manipulation and export procedures; 3) automated export
procedures for seamless data downloads to common statistical packages; and
4) procedures for data integration and interoperability with external
sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>;
Harris et al (2019) <doi:10.1016/j.jbi.2019.103208> [...truncated...]
Author: Andreas Gammelgaard Damsbo [aut, cre] ,
Paul Egeler [aut]
Maintainer: Andreas Gammelgaard Damsbo <andreas@gdamsbo.dk>
Diff between REDCapCAST versions 26.1.1 dated 2026-01-29 and 26.10.1 dated 2026-10-29
DESCRIPTION | 10 MD5 | 35 - NAMESPACE | 30 NEWS.md | 13 R/ds2dd_detailed.R | 5 R/read_redcap_tables.R | 4 R/shiny_cast.R | 13 R/shiny_descr.R |only R/topological_sort.R |only build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 12 inst/doc/REDCapCAST.html | 330 +++++----- inst/shiny-examples/casting/app.R | 301 ++++++--- inst/shiny-examples/casting/rsconnect/shinyapps.io/agdamsbo/redcapcast.dcf | 2 man/REDCapCAST-package.Rd | 3 man/ds2dd_detailed.Rd | 4 man/read_input.Rd | 6 man/safe_topological_sort.Rd |only man/topological_sort.Rd |only tests/testthat/test-topological_sort.R |only 21 files changed, 457 insertions(+), 311 deletions(-)
Title: A Logistic Regression Model for Testing Microbial Differential
Abundance
Description: Testing differential abundance at individual taxa and in a whole microbial community. The tests are based on the log-ratio of relative abundances. The tests accommodate continuous, discrete (binary, categorical), and multivariate traits, and allow adjustment of confounders. For more details see He (2026) <doi:10.64898/2026.04.07.716976>. This package also includes the 'com2seq' function that combines two sequencing datasets (e.g., from 16S marker-gene and shotgun sequencing) for integrative analysis of differential abundance. For more details see <doi:10.1080/01621459.2025.2516205>.
Author: Yi-Juan Hu [aut, cre]
Maintainer: Yi-Juan Hu <yijuanhu@bicmr.pku.edu.cn>
Diff between LOCOM2 versions 1.0 dated 2026-05-04 and 1.1 dated 2026-10-29
DESCRIPTION | 10 - MD5 | 32 ++- NAMESPACE | 3 R/LOCOM2_fun.R | 392 +++++++++++++++++++++++++++++++----------- R/RcppExports.R | 12 + R/com2seq_fun.R |only R/meta.1.R |only R/meta.2.R |only R/otu.table.1.R |only R/otu.table.2.R |only README.md | 40 +++- data/meta.1.RData |only data/meta.2.RData |only data/otu.table.1.RData |only data/otu.table.2.RData |only man/com2seq.Rd |only man/locom2.Rd | 38 ++-- man/meta.1.Rd |only man/meta.2.Rd |only man/otu.table.1.Rd |only man/otu.table.2.Rd |only src/Newton.cpp |only src/RcppExports.cpp | 58 ++++++ tests/testthat/test-com2seq.R |only tests/testthat/test-locom2.R | 2 25 files changed, 456 insertions(+), 131 deletions(-)
Title: Exponential Multivariate Hawkes Model
Description: Simulate and fit multivariate Hawkes models with exponential
kernels, introduced by Hawkes (1971) <doi:10.2307/2334319>.
Includes marked, state-dependent, and multi-kernel specifications.
Parameter estimation uses maximum likelihood, following Ozaki (1979)
<doi:10.1007/BF02480272>, through the optional 'maxLik' package or
the optimization functions supplied with R.
Author: Kyungsub Lee [aut, cre]
Maintainer: Kyungsub Lee <kyungsub@gmail.com>
Diff between emhawkes versions 1.0.1 dated 2026-10-18 and 1.0.2 dated 2026-10-29
DESCRIPTION | 6 ++-- MD5 | 18 ++++++++------ NEWS.md | 12 +++++++++ inst/doc/example.html | 6 ++-- src/hawkes_loglik.cpp | 46 ++++++++++++++++++++++++++++---------- src/hawkes_simulate.cpp | 33 ++++++++++++++++++--------- src/hawkes_simulate_callbacks.cpp | 29 +++++++++++++++++------ src/hawkes_simulate_equal.cpp | 27 +++++++++++++++------- src/r_precision.h |only src/simulation_state.h | 31 +++++++++---------------- tests/native-precision.R |only 11 files changed, 136 insertions(+), 72 deletions(-)
Title: Native Simulation and Estimation of Network Models
Description: A self-contained native engine (a C interface over C++ host
logic) for stochastic actor-oriented models (the model family of
'RSiena'), exponential random graph models (cross-sectional, temporal,
and separable temporal), and models for binary actor attributes,
callable from R without a Python runtime. The CRAN build is CPU-only
(C++17, multi-threaded with 'OpenMP'); a 'CUDA' backend implements the
same interface and is built separately from source. The data
preparation, host statistics ('RSiena' Appendix B conventions), and
moment targets are validated bit-for-bit against the reference
implementation and reproduce 'RSiena' targets on public datasets to
machine precision; the estimators match 'RSiena', 'ergm', 'btergm', and
'tergm' on public benchmark models. The method-of-moments estimator
returns standard fit objects with the simulated networks on request, and
the simulator also plugs into the unmodified 'RSiena' estimator.
Author: Artem Maltsev [aut, cre]
Maintainer: Artem Maltsev <MaltsevSNA@proton.me>
Diff between cusna versions 0.1.0 dated 2026-07-15 and 0.1.1 dated 2026-10-29
DESCRIPTION | 40 + MD5 | 79 ++- NAMESPACE | 3 NEWS.md | 92 +++- R/cpp11.R | 4 R/cusna-package.R | 16 R/ergm.R | 127 +++++- R/estimate.R | 19 R/fran.R | 31 + R/mom.R | 39 + R/simulate.R |only R/stats.R | 6 README.md | 122 ++--- build/vignette.rds |binary configure | 46 +- configure.win | 53 +- data |only inst/doc/cusna.R | 167 ++++---- inst/doc/cusna.Rmd | 430 +++++++++++---------- inst/doc/cusna.html | 857 ++++++++++++++++++++++-------------------- inst/doc/siena07-backend.R | 39 + inst/doc/siena07-backend.Rmd | 162 ++++--- inst/doc/siena07-backend.html | 432 +++++++++++---------- man/cusna-package.Rd | 14 man/cusna_abi_version.Rd | 10 man/cusna_effect.Rd | 154 +++---- man/cusna_fit.Rd | 116 +++-- man/cusna_fran.Rd | 107 +++-- man/cusna_gof_distribution.Rd | 7 man/cusna_set_threads.Rd | 50 +- man/mom_estimate.Rd | 187 +++++---- man/s50.Rd |only man/saom_data.Rd | 84 ++-- man/saom_multinet.Rd | 130 +++--- man/saom_simulate.Rd |only man/stergm_simulate.Rd |only src/cpp11.cpp | 8 src/cusna_glue.cpp | 26 - tests/testthat/test-api.R | 6 tests/testthat/test-ergm.R | 76 +++ tests/testthat/test-fran.R |only tests/testthat/test-nets.R |only vignettes/cusna.Rmd | 430 +++++++++++---------- vignettes/siena07-backend.Rmd | 162 ++++--- 44 files changed, 2445 insertions(+), 1886 deletions(-)
Title: Calculation of Slope-Dependant Accumulated Cost Surface,
Least-Cost Paths, Least-Cost Corridors, Least-Cost Networks
Related to Human Movement Across the Landscape
Description: Provides the facility to calculate non-isotropic accumulated cost surfaces, least-cost paths, least-cost corridors, least-cost networks, ranked alternative paths, cost allocation and cost boundaries, using a number of human-movement-related cost functions that can be selected by the user. The terrain factor can be set as a single value or vary across the landscape via a raster of terrain factors or terrain classes. The package is built around a compute-once design: a single cost surface object is created first and then reused by every analysis function, avoiding redundant computation. Visualisation is fully decoupled from computation and is provided through 'ggplot2' methods that can be invoked, customised, and re-invoked at any time without re-running any analysis. It just requires a Digital Terrain Model, a start location and (optionally) destination locations. See Alberti (2019) <doi:10.1016/j.softx.2019.100331>.
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Diff between movecost versions 3.0.0 dated 2026-06-15 and 3.1.0 dated 2026-10-29
DESCRIPTION | 8 MD5 | 49 ++--- NAMESPACE | 1 NEWS.md | 98 ++++++++++ R/cost_functions.R | 123 ++++++++++-- R/data.R | 2 R/mc_comp.R | 12 + R/mc_export.R | 5 R/mc_surface.R | 171 ++++++++++++++++- R/mc_terrain.R |only R/plot_methods.R | 30 ++- R/utils.R | 12 + README.md | 17 + build/vignette.rds |binary inst/CITATION | 9 inst/doc/movecost.R | 80 ++++++-- inst/doc/movecost.Rmd | 179 +++++++++++++----- inst/doc/movecost.html | 410 ++++++++++++++++++++++++------------------ man/mc_comp.Rd | 6 man/mc_cost_functions.Rd | 90 +++++++-- man/mc_export.Rd | 4 man/mc_surface.Rd | 91 ++++++++- man/mc_terrain_factors.Rd |only man/movecost-package.Rd | 2 man/plot.movecost_surface.Rd | 12 + tests/testthat/test-terrain.R |only vignettes/movecost.Rmd | 179 +++++++++++++----- 27 files changed, 1203 insertions(+), 387 deletions(-)
Title: Manage 'CDISC' 'ADaM' Dataset Specifications in 'YAML' Format
Description: Load, validate, and manipulate Clinical Data Interchange
Standards Consortium ('CDISC') Analysis Data Model ('ADaM') dataset
metadata stored as 'YAML' files. Metadata files are validated against
a JSON schema. Provides functions to inspect and modify columns,
parameters, and row-level operations within and across 'ADaM' domains.
Designed for use with the 'mighty' framework.
Author: Aksel Thomsen [aut, cre],
Ari Siggaard Knoph [aut],
Matthew Phelps [aut],
Giulia Pais [aut],
Katarzyna Graczyk [aut],
Michael Hedegaard Thomsen [aut],
Novo Nordisk A/S [cph]
Maintainer: Aksel Thomsen <oath@novonordisk.com>
Diff between mighty.metadata versions 0.1.0 dated 2026-05-15 and 0.2.0 dated 2026-10-29
mighty.metadata-0.1.0/mighty.metadata/R/z_resolve.R |only mighty.metadata-0.1.0/mighty.metadata/tests/testthat/test-z_resolve.R |only mighty.metadata-0.2.0/mighty.metadata/DESCRIPTION | 18 mighty.metadata-0.2.0/mighty.metadata/MD5 | 160 ++++-- mighty.metadata-0.2.0/mighty.metadata/NAMESPACE | 29 + mighty.metadata-0.2.0/mighty.metadata/NEWS.md | 29 + mighty.metadata-0.2.0/mighty.metadata/R/a_mighty_config.R |only mighty.metadata-0.2.0/mighty.metadata/R/a_study_config.R |only mighty.metadata-0.2.0/mighty.metadata/R/documents.R |only mighty.metadata-0.2.0/mighty.metadata/R/mighty_codelists.R |only mighty.metadata-0.2.0/mighty.metadata/R/mighty_domain.R | 39 + mighty.metadata-0.2.0/mighty.metadata/R/mighty_study.R | 165 ++++-- mighty.metadata-0.2.0/mighty.metadata/R/reexports.R | 4 mighty.metadata-0.2.0/mighty.metadata/R/utils-create-md.R |only mighty.metadata-0.2.0/mighty.metadata/R/utils-schema.R |only mighty.metadata-0.2.0/mighty.metadata/R/utils-vector.R | 74 ++- mighty.metadata-0.2.0/mighty.metadata/R/utils-yml.R | 23 mighty.metadata-0.2.0/mighty.metadata/R/y_codelists.R |only mighty.metadata-0.2.0/mighty.metadata/R/y_create_md.R |only mighty.metadata-0.2.0/mighty.metadata/R/y_create_md_col.R | 40 - mighty.metadata-0.2.0/mighty.metadata/R/y_create_md_param.R |only mighty.metadata-0.2.0/mighty.metadata/R/y_create_md_table.R |only mighty.metadata-0.2.0/mighty.metadata/R/y_create_md_values.R |only mighty.metadata-0.2.0/mighty.metadata/R/y_documents.R |only mighty.metadata-0.2.0/mighty.metadata/R/y_filter_domains.R |only mighty.metadata-0.2.0/mighty.metadata/R/y_populate_core.R | 24 - mighty.metadata-0.2.0/mighty.metadata/R/y_populate_sparse.R | 29 - mighty.metadata-0.2.0/mighty.metadata/R/y_write_config.R | 55 +- mighty.metadata-0.2.0/mighty.metadata/R/z_resolve_includes.R |only mighty.metadata-0.2.0/mighty.metadata/R/z_resolve_subsets.R |only mighty.metadata-0.2.0/mighty.metadata/R/zzz.R | 18 mighty.metadata-0.2.0/mighty.metadata/README.md | 31 - mighty.metadata-0.2.0/mighty.metadata/build/vignette.rds |binary mighty.metadata-0.2.0/mighty.metadata/inst/WORDLIST | 143 ++++-- mighty.metadata-0.2.0/mighty.metadata/inst/doc/adam-schema.html | 118 ++++- mighty.metadata-0.2.0/mighty.metadata/inst/doc/codelists-schema.R |only mighty.metadata-0.2.0/mighty.metadata/inst/doc/codelists-schema.Rmd |only mighty.metadata-0.2.0/mighty.metadata/inst/doc/codelists-schema.html |only mighty.metadata-0.2.0/mighty.metadata/inst/doc/mighty-metadata.R | 9 mighty.metadata-0.2.0/mighty.metadata/inst/doc/mighty-metadata.Rmd | 41 + mighty.metadata-0.2.0/mighty.metadata/inst/doc/mighty-metadata.html | 236 ++++++---- mighty.metadata-0.2.0/mighty.metadata/inst/doc/mighty-schema.html | 25 - mighty.metadata-0.2.0/mighty.metadata/inst/doc/study-schema.Rmd | 35 + mighty.metadata-0.2.0/mighty.metadata/inst/doc/study-schema.html | 112 ++++ mighty.metadata-0.2.0/mighty.metadata/inst/examples/_mighty.yml | 3 mighty.metadata-0.2.0/mighty.metadata/inst/examples/_study.yml | 14 mighty.metadata-0.2.0/mighty.metadata/inst/schema/adam.json | 51 ++ mighty.metadata-0.2.0/mighty.metadata/inst/schema/codelists.json |only mighty.metadata-0.2.0/mighty.metadata/inst/schema/documents.json |only mighty.metadata-0.2.0/mighty.metadata/inst/schema/mighty.json | 20 mighty.metadata-0.2.0/mighty.metadata/inst/schema/study.json | 29 + mighty.metadata-0.2.0/mighty.metadata/man/codelists.Rd |only mighty.metadata-0.2.0/mighty.metadata/man/create_md.Rd |only mighty.metadata-0.2.0/mighty.metadata/man/create_md_col.Rd | 6 mighty.metadata-0.2.0/mighty.metadata/man/create_md_param.Rd |only mighty.metadata-0.2.0/mighty.metadata/man/create_md_table.Rd |only mighty.metadata-0.2.0/mighty.metadata/man/create_md_values.Rd |only mighty.metadata-0.2.0/mighty.metadata/man/documents.Rd |only mighty.metadata-0.2.0/mighty.metadata/man/filter_domains.Rd |only mighty.metadata-0.2.0/mighty.metadata/man/mighty.metadata-options-params.Rd | 2 mighty.metadata-0.2.0/mighty.metadata/man/mighty.metadata-package.Rd | 3 mighty.metadata-0.2.0/mighty.metadata/man/mighty_config.Rd |only mighty.metadata-0.2.0/mighty.metadata/man/mighty_domain.Rd | 32 + mighty.metadata-0.2.0/mighty.metadata/man/mighty_study.Rd | 52 +- mighty.metadata-0.2.0/mighty.metadata/man/reexports.Rd | 5 mighty.metadata-0.2.0/mighty.metadata/man/resolve_includes.Rd | 5 mighty.metadata-0.2.0/mighty.metadata/man/resolve_subsets.Rd |only mighty.metadata-0.2.0/mighty.metadata/man/study_config.Rd |only mighty.metadata-0.2.0/mighty.metadata/man/write_config.Rd |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/_snaps/a_mighty_config.md |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/_snaps/a_study_config.md |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/_snaps/mighty_codelists.md |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/_snaps/mighty_study.md | 23 mighty.metadata-0.2.0/mighty.metadata/tests/testthat/_snaps/y_codelists.md |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/_snaps/y_create_md_param.md |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/_snaps/y_create_md_table.md |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/_snaps/y_create_md_values.md |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/_snaps/y_documents.md |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/_snaps/y_write_config.md | 3 mighty.metadata-0.2.0/mighty.metadata/tests/testthat/_snaps/z_resolve_subsets.md |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/helper-codelists.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/helper-validations.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-a_mighty_config.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-a_study_config.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-documents.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-mighty_codelists.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-mighty_domain.R | 29 + mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-mighty_study.R | 88 +++ mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-utils-create-md.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-utils-schema.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-utils-vector.R | 67 ++ mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-utils-yml.R | 48 -- mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-y_codelists.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-y_create_md.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-y_create_md_param.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-y_create_md_table.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-y_create_md_values.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-y_documents.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-y_filter_domains.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-y_populate_core.R | 42 + mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-y_populate_sparse.R | 28 + mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-y_write_config.R | 67 ++ mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-z_resolve_includes.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test-z_resolve_subsets.R |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test_study/_codelists.yml |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test_study/_documents.yml |only mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test_study/_mighty.yml | 2 mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test_study/adae.yml | 3 mighty.metadata-0.2.0/mighty.metadata/tests/testthat/test_study/advs.yml | 10 mighty.metadata-0.2.0/mighty.metadata/vignettes/codelists-schema.Rmd |only mighty.metadata-0.2.0/mighty.metadata/vignettes/mighty-metadata.Rmd | 41 + mighty.metadata-0.2.0/mighty.metadata/vignettes/study-schema.Rmd | 35 + 112 files changed, 1690 insertions(+), 475 deletions(-)
More information about mighty.metadata at CRAN
Permanent link
Title: Iterated Racing for Automatic Algorithm Configuration
Description: Iterated race is an extension of the Iterated F-race method for
the automatic configuration of optimization algorithms, that is,
(offline) tuning their parameters by finding the most appropriate
settings given a set of instances of an optimization problem.
M. López-Ibáñez, J. Dubois-Lacoste, L. Pérez Cáceres, T. Stützle,
and M. Birattari (2016) <doi:10.1016/j.orp.2016.09.002>.
Author: Manuel Lopez-Ibanez [aut, cre] ,
Jeremie Dubois-Lacoste [aut],
Leslie Perez Caceres [aut],
Thomas Stuetzle [aut],
Mauro Birattari [aut],
Eric Yuan [ctb],
Prasanna Balaprakash [ctb],
Nguyen Dang [ctb]
Maintainer: Manuel Lopez-Ibanez <manuel.lopez-ibanez@manchester.ac.uk>
Diff between irace versions 4.5 dated 2026-09-15 and 4.5.1 dated 2026-10-29
DESCRIPTION | 8 +++--- MD5 | 22 +++++++++-------- NAMESPACE | 20 ++++++++------- NEWS.md | 12 +++++++++ R/generation.R | 20 ++++++++++----- R/irace.R | 9 ++++--- R/utils.R | 4 --- R/version.R | 2 - build/partial.rdb |binary inst/doc/irace-package.pdf |binary tests/testthat/test-bug-102.R |only tests/testthat/test-bug-103.R |only vignettes/irace-package.bib | 54 ++++++++++++++++++++++++++++++++---------- 13 files changed, 103 insertions(+), 48 deletions(-)
Title: Offline Credit Risk Modelling, Calibration and Validation
Description: Native credit risk calculations, statistical
estimation, calibration, validation and cash flow simulation using local
structured data. Methods cover consumer and business lending with
explicit modelling assumptions, diagnostics and reproducible reference data.
Author: RiskDataScience GmbH [aut, cph],
Dimitrios Geromichalos [cre]
Maintainer: Dimitrios Geromichalos <riskdatascience@web.de>
Diff between creditratingsystem versions 0.1.0 dated 2026-10-28 and 0.1.1 dated 2026-10-29
DESCRIPTION | 6 ++-- MD5 | 14 +++++----- R/links.R | 8 +++--- README.md | 5 +++ inst/examples/wholesale_sector_journey_review.R | 9 ++++++ tests/test-links.R | 15 +++++++++++ tests/test-retail-pools.R | 2 - tests/test-wholesale-sector-journey-review.R | 31 ++++++++++++++++++++++++ 8 files changed, 74 insertions(+), 16 deletions(-)
More information about creditratingsystem at CRAN
Permanent link
Title: VITA, IG, PLSIM and VM Simulation for Given Covariance and
Marginals
Description: Random sampling from distributions with user-specified population covariance matrix. Marginal information may be fully
specified, for which the package implements the VITA (VIne-To-Anything) algorithm
Grønneberg and Foldnes (2017) <doi:10.1007/s11336-017-9569-6>. See also Grønneberg, Foldnes and Marcoulides (2022) <doi:10.18637/jss.v102.i03>.
Alternatively, marginal skewness and kurtosis may be specified, for which the package
implements the IG (independent generator), PLSIM (piecewise linear) and VM (Vale-Maurelli) algorithms, see Foldnes and Olsson (2016) <doi:10.1080/00273171.2015.1133274>,
Foldnes and Grønneberg (2021) <doi:10.1080/10705511.2021.1949323> and Vale and Maurelli (1983) <doi:10.1007/BF02293687>, respectively.
Author: Njaal Foldnes [aut, cre],
Steffen Groenneberg [aut]
Maintainer: Njaal Foldnes <njal.foldnes@gmail.com>
Diff between covsim versions 1.1.0 dated 2024-05-31 and 1.2.0 dated 2026-10-29
covsim-1.1.0/covsim/vignettes/IG_PL-1.png |only covsim-1.1.0/covsim/vignettes/IG_PL-2.png |only covsim-1.1.0/covsim/vignettes/vignette.Rmd.orig |only covsim-1.1.0/covsim/vignettes/vita-1.png |only covsim-1.2.0/covsim/DESCRIPTION | 21 covsim-1.2.0/covsim/MD5 | 60 covsim-1.2.0/covsim/NAMESPACE | 11 covsim-1.2.0/covsim/NEWS.md | 62 covsim-1.2.0/covsim/R/IG.R | 175 +- covsim-1.2.0/covsim/R/PLSIM.R | 280 ++- covsim-1.2.0/covsim/R/VM.R |only covsim-1.2.0/covsim/R/auxiliary.R | 123 + covsim-1.2.0/covsim/R/simulate_estimate.R |only covsim-1.2.0/covsim/R/vita.R | 69 covsim-1.2.0/covsim/README.md | 54 covsim-1.2.0/covsim/build/vignette.rds |binary covsim-1.2.0/covsim/inst/doc/calibrate-simulate.R |only covsim-1.2.0/covsim/inst/doc/calibrate-simulate.Rmd |only covsim-1.2.0/covsim/inst/doc/calibrate-simulate.html |only covsim-1.2.0/covsim/inst/doc/simulation-study.R |only covsim-1.2.0/covsim/inst/doc/simulation-study.Rmd |only covsim-1.2.0/covsim/inst/doc/simulation-study.html |only covsim-1.2.0/covsim/inst/doc/vignette.R |only covsim-1.2.0/covsim/inst/doc/vignette.Rmd | 402 ----- covsim-1.2.0/covsim/inst/doc/vignette.html | 1117 +++++--------- covsim-1.2.0/covsim/man/calibrate_ig.Rd |only covsim-1.2.0/covsim/man/calibrate_plsim.Rd |only covsim-1.2.0/covsim/man/calibrate_vita.Rd |only covsim-1.2.0/covsim/man/calibrate_vm.Rd |only covsim-1.2.0/covsim/man/rIG.Rd | 17 covsim-1.2.0/covsim/man/rPLSIM.Rd | 25 covsim-1.2.0/covsim/man/rVM.Rd |only covsim-1.2.0/covsim/man/simulate.covsim_calib_ig.Rd |only covsim-1.2.0/covsim/man/simulate.covsim_calib_plsim.Rd |only covsim-1.2.0/covsim/man/simulate.covsim_calib_vita.Rd |only covsim-1.2.0/covsim/man/simulate.covsim_calib_vm.Rd |only covsim-1.2.0/covsim/man/simulate_estimate.Rd |only covsim-1.2.0/covsim/tests/testthat/testCalibrate.R |only covsim-1.2.0/covsim/tests/testthat/testIG.R | 19 covsim-1.2.0/covsim/tests/testthat/testPL.R | 69 covsim-1.2.0/covsim/tests/testthat/testSimulateEstimate.R |only covsim-1.2.0/covsim/tests/testthat/testVM.R |only covsim-1.2.0/covsim/vignettes/calibrate-simulate.Rmd |only covsim-1.2.0/covsim/vignettes/simulation-study.Rmd |only covsim-1.2.0/covsim/vignettes/vignette.Rmd | 402 ----- 45 files changed, 1339 insertions(+), 1567 deletions(-)
Title: Regression Modeling Strategies
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. 'rms' is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families and types of censoring
with optional random effects, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. 'rms' works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression.
Author: Frank E Harrell Jr [aut, cre]
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between rms versions 8.1-1 dated 2026-02-18 and 8.2-0 dated 2026-10-29
rms-8.1-1/rms/R/orm.fit.s |only rms-8.2-0/rms/DESCRIPTION | 17 rms-8.2-0/rms/MD5 | 207 ++- rms-8.2-0/rms/NAMESPACE | 13 rms-8.2-0/rms/NEWS | 35 rms-8.2-0/rms/R/Glm.r | 57 - rms-8.2-0/rms/R/Gls.s | 76 - rms-8.2-0/rms/R/Ocens.r | 944 +++++++++++------ rms-8.2-0/rms/R/Olinks.r | 22 rms-8.2-0/rms/R/Rq.s | 133 ++ rms-8.2-0/rms/R/Survival.orm.r | 309 +++-- rms-8.2-0/rms/R/adapt_orm.r | 28 rms-8.2-0/rms/R/anova.rms.s | 353 ++++++ rms-8.2-0/rms/R/bj.s | 36 rms-8.2-0/rms/R/calibrate.cph.s | 4 rms-8.2-0/rms/R/calibrate.default.s | 2 rms-8.2-0/rms/R/calibrate.orm.r | 2 rms-8.2-0/rms/R/calibrate.psm.s | 4 rms-8.2-0/rms/R/cluster.r |only rms-8.2-0/rms/R/contrast.s | 49 rms-8.2-0/rms/R/corFloorExp.r |only rms-8.2-0/rms/R/cph.s | 134 +- rms-8.2-0/rms/R/hazard.ratio.plot.s | 2 rms-8.2-0/rms/R/impactPO.r | 14 rms-8.2-0/rms/R/infoMxop.r | 243 +++- rms-8.2-0/rms/R/latex.cph.s | 158 ++ rms-8.2-0/rms/R/latex.lrm.s | 80 + rms-8.2-0/rms/R/latex.ols.s | 10 rms-8.2-0/rms/R/latex.pphsm.s | 27 rms-8.2-0/rms/R/latex.psm.s | 27 rms-8.2-0/rms/R/latex.rms.s | 211 +++ rms-8.2-0/rms/R/lrm.fit.r | 1226 ++++++++++++----------- rms-8.2-0/rms/R/lrm.s | 115 +- rms-8.2-0/rms/R/nomogram.s | 2 rms-8.2-0/rms/R/ols.s | 117 +- rms-8.2-0/rms/R/ordParallel.r | 2 rms-8.2-0/rms/R/orm.fit.r |only rms-8.2-0/rms/R/orm.rfit.r |only rms-8.2-0/rms/R/orm.s | 151 ++ rms-8.2-0/rms/R/plot.Predict.s | 2 rms-8.2-0/rms/R/plot.nomogram.s | 2 rms-8.2-0/rms/R/print.psm.s | 51 rms-8.2-0/rms/R/processMI.r | 158 ++ rms-8.2-0/rms/R/psm.s | 2 rms-8.2-0/rms/R/quickRefit.r | 16 rms-8.2-0/rms/R/recode2integer.r | 63 - rms-8.2-0/rms/R/residuals.lrm.s | 2 rms-8.2-0/rms/R/rms.s | 107 +- rms-8.2-0/rms/R/rms.trans.s | 53 rms-8.2-0/rms/R/rmsMisc.s | 689 ++++++++++-- rms-8.2-0/rms/R/summary.rms.s | 211 ++- rms-8.2-0/rms/R/survest.psm.s | 2 rms-8.2-0/rms/R/survplot.npsurv.s | 60 - rms-8.2-0/rms/R/survplot.rms.s | 2 rms-8.2-0/rms/R/val.prob.s | 6 rms-8.2-0/rms/R/val.surv.s | 2 rms-8.2-0/rms/R/validate.cph.s | 31 rms-8.2-0/rms/R/validate.ols.s | 291 +++-- rms-8.2-0/rms/inst/tests/Survival-orm-km.r | 90 + rms-8.2-0/rms/inst/tests/corFloorExp.r |only rms-8.2-0/rms/inst/tests/orm-censor-likelihood.r | 34 rms-8.2-0/rms/inst/tests/orm-censor3.r | 10 rms-8.2-0/rms/inst/tests/orm-re-exact-opt.rds |only rms-8.2-0/rms/inst/tests/orm-re-exact.r |only rms-8.2-0/rms/inst/tests/orm-re.r |only rms-8.2-0/rms/inst/tests/orm7.r | 15 rms-8.2-0/rms/inst/tests/typst.qmd |only rms-8.2-0/rms/inst/tests/yu.rds |only rms-8.2-0/rms/man/ExProb.Rd | 13 rms-8.2-0/rms/man/Glm.Rd | 4 rms-8.2-0/rms/man/Gls.Rd | 4 rms-8.2-0/rms/man/Ocens.Rd | 2 rms-8.2-0/rms/man/Ocens2ord.Rd | 14 rms-8.2-0/rms/man/Olinks.Rd | 5 rms-8.2-0/rms/man/Rq.Rd | 10 rms-8.2-0/rms/man/anova.rms.Rd | 30 rms-8.2-0/rms/man/bj.Rd | 4 rms-8.2-0/rms/man/cluster.Rd |only rms-8.2-0/rms/man/corFloorExp.Rd |only rms-8.2-0/rms/man/impactPO.Rd | 4 rms-8.2-0/rms/man/infoMxop.Rd | 21 rms-8.2-0/rms/man/latex.cph.Rd | 9 rms-8.2-0/rms/man/latexrms.Rd | 19 rms-8.2-0/rms/man/lrm.Rd | 4 rms-8.2-0/rms/man/lrm.fit.Rd | 6 rms-8.2-0/rms/man/mix_re.Rd |only rms-8.2-0/rms/man/nomogram.Rd | 4 rms-8.2-0/rms/man/orm.Rd | 16 rms-8.2-0/rms/man/orm.fit.Rd | 741 +++++++++++-- rms-8.2-0/rms/man/plot.Predict.Rd | 20 rms-8.2-0/rms/man/predict.lrm.Rd | 10 rms-8.2-0/rms/man/print.Glm.Rd | 2 rms-8.2-0/rms/man/print.cph.Rd | 4 rms-8.2-0/rms/man/print.ols.Rd | 4 rms-8.2-0/rms/man/prmiInfo.Rd | 2 rms-8.2-0/rms/man/processMI.Rd | 2 rms-8.2-0/rms/man/processMI.fit.mult.impute.Rd | 2 rms-8.2-0/rms/man/psm.Rd | 4 rms-8.2-0/rms/man/recode2integer.Rd | 10 rms-8.2-0/rms/man/rexVar.Rd | 2 rms-8.2-0/rms/man/rms.Rd | 14 rms-8.2-0/rms/man/rms.trans.Rd | 8 rms-8.2-0/rms/man/rmsMisc.Rd | 65 - rms-8.2-0/rms/man/summary.rms.Rd | 28 rms-8.2-0/rms/man/survplot.Rd | 46 rms-8.2-0/rms/man/validate.Rd | 33 rms-8.2-0/rms/man/validate.Rq.Rd | 3 rms-8.2-0/rms/man/validate.ols.Rd | 2 rms-8.2-0/rms/src/init.c | 22 rms-8.2-0/rms/src/orm_links.f90 |only rms-8.2-0/rms/src/ormeta.f90 |only rms-8.2-0/rms/src/ormidx.f90 |only rms-8.2-0/rms/src/ormll.f90 | 443 +++----- 113 files changed, 5582 insertions(+), 2763 deletions(-)
Title: Histogram-Valued Data Analysis
Description: In the framework of Symbolic Data Analysis, a relatively new
approach to the statistical analysis of multi-valued data, we consider
histogram-valued data, i.e., data described by univariate histograms. The
methods and the basic statistics for histogram-valued data are mainly based
on the L2 Wasserstein metric between distributions, i.e., the Euclidean metric
between quantile functions. The package contains unsupervised classification
techniques, least square regression and tools for histogram-valued data and for
histogram time series. An introducing paper is Irpino A. Verde R. (2015) <doi: 10.1007/s11634-014-0176-4>.
Author: Antonio Irpino [aut, cre]
Maintainer: Antonio Irpino <antonio.irpino@unicampania.it>
Diff between HistDAWass versions 1.0.9 dated 2026-10-18 and 1.0.10 dated 2026-10-29
DESCRIPTION | 11 MD5 | 210 ++++---- NAMESPACE | 238 +++++----- NEWS.md | 197 ++++++++ R/For_Rccp_int.R | 6 R/Fuzzy_cmeans.R | 12 R/H_time_series.R | 17 R/Kohonen_maps.R | 9 R/Met_MatH.R | 37 - R/Met_distributionH.R | 35 + R/Plotting_with_ggplot.R | 21 R/RcppExports.R | 362 +++++++-------- R/Utility.R | 24 + R/principal_components.R | 91 ++- R/regression.R | 12 R/unsuperv_classification.R | 6 README.md | 666 ++++++++++++++-------------- build/partial.rdb |binary build/vignette.rds |only inst |only man/Age_Pyramids_2014.Rd | 44 - man/Agronomique.Rd | 46 - man/Arith-distributionH.Rd | 4 man/BLOOD.Rd | 44 - man/BloodBRITO.Rd | 40 - man/Center.cell.MatH-methods.Rd | 44 - man/China_Month.Rd | 60 +- man/China_Seas.Rd | 60 +- man/DouglasPeucker.Rd | 58 +- man/HTS-class.Rd | 68 +- man/HTS.exponential.smoothing.Rd | 56 +- man/HTS.moving.averages.Rd | 62 +- man/HTS.predict.knn.Rd | 66 +- man/HistDAWass-package.Rd | 176 +++---- man/MatH-class.Rd | 164 +++--- man/OzoneFull.Rd | 42 - man/OzoneH.Rd | 42 - man/RetHTS.Rd | 34 - man/ShortestDistance.Rd | 52 +- man/TMatH-class.Rd | 60 +- man/TdistributionH-class.Rd | 86 +-- man/WH.1d.PCA.Rd | 132 ++--- man/WH.MultiplePCA.Rd | 80 +-- man/WH.bind-methods.Rd | 80 +-- man/WH.mat.prod-methods.Rd | 54 +- man/WH.mat.sum-methods.Rd | 48 +- man/WH.plot_multiple_Spanish.funs.Rd | 92 +-- man/WH.plot_multiple_indivs.Rd | 139 +++-- man/WH.regression.GOF.Rd | 76 +-- man/WH.regression.two.components.Rd | 96 ++-- man/WH.regression.two.components.predict.Rd | 64 +- man/WH.var.covar-methods.Rd | 134 ++--- man/WH.vec.mean-methods.Rd | 72 +-- man/WH_2d_Adaptive_Kohonen_maps.Rd | 242 +++++----- man/WH_2d_Kohonen_maps.Rd | 186 +++---- man/WH_MAT_DIST.Rd | 82 +-- man/WH_adaptive.kmeans.Rd | 170 +++---- man/WH_adaptive_fcmeans.Rd | 170 +++---- man/WH_fcmeans.Rd | 104 ++-- man/WH_hclust.Rd | 114 ++-- man/WH_kmeans.Rd | 136 ++--- man/WassSqDistH-methods.Rd | 90 +-- man/checkEmptyBins-methods.Rd | 66 +- man/compP-methods.Rd | 56 +- man/compQ-methods.Rd | 62 +- man/crwtransform-methods.Rd | 64 +- man/data2hist.Rd | 108 ++-- man/distributionH-class.Rd | 144 +++--- man/dotpW-methods.Rd | 72 +-- man/extract-methods.Rd | 60 +- man/get.MatH.main.info-methods.Rd | 90 +-- man/get.MatH.stats-methods.Rd | 68 +- man/get.cell.MatH-methods.Rd | 68 +- man/get.distr-methods.Rd | 54 +- man/get.histo-methods.Rd | 54 +- man/get.m-methods.Rd | 52 +- man/get.s-methods.Rd | 54 +- man/kurtH-methods.Rd | 52 +- man/meanH-methods.Rd | 50 +- man/plot-HTS.Rd | 72 +-- man/plot-MatH.Rd | 72 +-- man/plot-TdistributionH.Rd | 66 +- man/plot-distributionH.Rd | 80 +-- man/plotPredVsObs.Rd | 82 +-- man/plot_errors.Rd | 78 +-- man/rQQ-methods.Rd | 60 +- man/register-methods.Rd | 70 +- man/registerMH-methods.Rd | 84 +-- man/show-MatH-methods.Rd | 44 - man/show-distributionH-methods.Rd | 46 - man/skewH-methods.Rd | 52 +- man/stations_coordinates.Rd | 48 +- man/stdH-methods.Rd | 52 +- man/subsetHTS-methods.Rd | 46 - src/RcppExports.cpp | 12 src/Utility_fun.cpp | 193 +++++--- tests/testthat/test-hts-arith.R |only tests/testthat/test-plots.R | 30 + vignettes |only 99 files changed, 4205 insertions(+), 3779 deletions(-)
Title: Test for Differences in Diversification Rates over Time
Description: Employ time-calibrated phylogenies and trait/range data to test for
differences in diversification rates over evolutionary time. Extend
the STRAPP test from BAMMtools::traitDependentBAMM() to any time step
along phylogenies. See inst/COPYRIGHTS for details on third-party code.
Author: Mael Dore [aut, cre, cph] ,
Dan Rabosky [ctb],
Mike Grundler [ctb],
Huateng Huang [ctb],
Pascal Title [ctb],
Liam Revell [ctb],
Nicholas J. Matzke [ctb]
Maintainer: Mael Dore <mael.dore@gmail.com>
Diff between deepSTRAPP versions 1.1.0 dated 2026-09-27 and 1.1.1 dated 2026-10-29
DESCRIPTION | 6 MD5 | 85 - NEWS.md | 8 R/build_BAMM_object.R | 10 R/convert_BSMs_to_simmaps.R | 110 + R/convert_contsimmap_to_contMaps.R | 10 README.md | 32 data/eel_biogeo_data.rda |binary inst/CITATION | 2 inst/doc/cut_phylogenies.R | 16 inst/doc/cut_phylogenies.Rmd | 1398 +++++++++++----------- inst/doc/cut_phylogenies.html | 10 inst/doc/deepSTRAPP.html | 4 inst/doc/deepSTRAPP_biogeographic_data.R | 4 inst/doc/deepSTRAPP_biogeographic_data.Rmd | 4 inst/doc/deepSTRAPP_biogeographic_data.html | 6 inst/doc/deepSTRAPP_categorical_data.R | 4 inst/doc/deepSTRAPP_categorical_data.Rmd | 4 inst/doc/deepSTRAPP_categorical_data.html | 6 inst/doc/deepSTRAPP_continuous_data.R | 2 inst/doc/deepSTRAPP_continuous_data.Rmd | 2 inst/doc/deepSTRAPP_continuous_data.html | 4 inst/doc/handle_uncertainty.html | 4 inst/doc/import_external_analyses.R | 23 inst/doc/import_external_analyses.Rmd | 23 inst/doc/import_external_analyses.html | 409 +++--- inst/doc/main_tutorial.R | 4 inst/doc/main_tutorial.Rmd | 4 inst/doc/main_tutorial.html | 8 inst/doc/model_biogeographic_range_evolution.html | 4 inst/doc/model_categorical_trait_evolution.html | 4 inst/doc/model_continuous_trait_evolution.html | 4 inst/doc/model_diversification_dynamics.html | 4 inst/extdata |only man/build_BAMM_object.Rd | 10 man/convert_BSM_to_simmap.Rd | 7 man/convert_contsimmap_to_contMaps.Rd | 10 vignettes/cut_phylogenies.Rmd | 1398 +++++++++++----------- vignettes/deepSTRAPP_biogeographic_data.Rmd | 4 vignettes/deepSTRAPP_categorical_data.Rmd | 4 vignettes/deepSTRAPP_continuous_data.Rmd | 2 vignettes/import_external_analyses.Rmd | 23 vignettes/main_tutorial.Rmd | 4 43 files changed, 1938 insertions(+), 1742 deletions(-)
Title: Zstandard Compression
Description: Compress and decompress data with the 'Zstandard'
algorithm <https://meta.github.io/zstd/>, a fast lossless
compression format. Works on raw vectors in memory and on files, and
can create and extract 'zstd' compressed 'tar' archives. Supports
compression levels, multithreaded compression, long distance
matching, content checksums, and training dictionaries for better
compression of small, similar inputs.
Author: Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd] ,
Yann Collet [aut] ,
Meta Platforms, Inc. and affiliates. [cph] ,
rxi [aut, cph]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between zstd versions 0.1.0 dated 2026-10-20 and 0.1.1 dated 2026-10-29
zstd-0.1.0/zstd/src/Makevars |only zstd-0.1.0/zstd/src/zdict.h |only zstd-0.1.0/zstd/src/zstd.c |only zstd-0.1.0/zstd/src/zstd.h |only zstd-0.1.0/zstd/src/zstd_errors.h |only zstd-0.1.1/zstd/DESCRIPTION | 13 +++--- zstd-0.1.1/zstd/MD5 | 43 ++++++++++++--------- zstd-0.1.1/zstd/NAMESPACE | 3 + zstd-0.1.1/zstd/NEWS.md | 5 ++ zstd-0.1.1/zstd/R/zstd-tar.R | 2 zstd-0.1.1/zstd/R/zstd-version.R |only zstd-0.1.1/zstd/cleanup |only zstd-0.1.1/zstd/configure |only zstd-0.1.1/zstd/configure.win |only zstd-0.1.1/zstd/man/zstd_tar_decompress.Rd | 2 zstd-0.1.1/zstd/man/zstd_version.Rd |only zstd-0.1.1/zstd/src/Makevars.in |only zstd-0.1.1/zstd/src/glue.c | 10 ++-- zstd-0.1.1/zstd/src/init.c | 2 zstd-0.1.1/zstd/src/libzstd |only zstd-0.1.1/zstd/src/microtar.c | 6 +- zstd-0.1.1/zstd/src/zstd_r.c | 7 +-- zstd-0.1.1/zstd/src/zstd_r.h | 2 zstd-0.1.1/zstd/src/zstd_stream.c | 3 - zstd-0.1.1/zstd/src/zstd_tar.c | 3 - zstd-0.1.1/zstd/src/zstd_version.c |only zstd-0.1.1/zstd/tests/testthat/test-zstd-version.R |only zstd-0.1.1/zstd/tools/zstd.patch | 12 ++--- 28 files changed, 68 insertions(+), 45 deletions(-)
Title: Multi-State Markov and Hidden Markov Models in Continuous Time
Description: Functions for fitting continuous-time Markov and hidden
Markov multi-state models to longitudinal data. Designed for
processes observed at arbitrary times in continuous time (panel data)
but some other observation schemes are supported. Both Markov
transition rates and the hidden Markov output process can be modelled
in terms of covariates, which may be constant or piecewise-constant
in time.
Author: Christopher Jackson [aut, cre]
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between msm versions 1.8.2 dated 2024-11-07 and 1.9 dated 2026-10-29
DESCRIPTION | 10 MD5 | 70 ++-- NAMESPACE | 112 ++++--- NEWS.md | 15 + R/hmm-dists.R | 6 R/internals_doc.R | 8 R/medists.R | 3 R/msm.R | 31 +- R/optim.R | 500 +++++++++++++++++----------------- R/outputs.R | 3 R/pearson.R | 44 ++ R/prevalence.R | 2 R/simul.R | 289 ++++++++++--------- R/simul_legacy.R |only R/tidy.R | 1 build/vignette.rds |binary inst/doc/msm-manual.R | 2 inst/doc/msm-manual.pdf |binary man/hmmMV.Rd | 2 man/msm-package.Rd | 5 man/msm.object.Rd | 8 man/pearson.msm.Rd | 2 man/plot.prevalence.msm.Rd | 2 man/sim.msm.Rd | 21 + man/simmulti.msm.Rd | 27 + src/lik.c | 3 src/msm-init.c | 4 src/pijt.c | 65 +--- src/simul.c |only tests/testthat/test_datasumm.r | 20 + tests/testthat/test_deriv.r | 63 +++- tests/testthat/test_models.r | 3 tests/testthat/test_models_hmmmulti.r | 8 tests/testthat/test_models_misc.r | 8 tests/testthat/test_pearson.R | 18 + tests/testthat/test_phase.R | 2 tests/testthat/test_simul.R | 108 +++++++ 37 files changed, 878 insertions(+), 587 deletions(-)
Title: Core 'hubverse' Utilities
Description: Core set of low-level utilities common across the
'hubverse'. Used to interact with 'hubverse' schema, Hub configuration files
and model outputs and designed to be primarily used internally by other
'hubverse' packages. See Reich et al. (2022) <doi:10.2105/AJPH.2022.306831>
for an overview of Collaborative Hubs.
Author: Anna Krystalli [aut, cre] ,
Li Shandross [aut],
Nicholas G. Reich [ctb] ,
Evan L. Ray [ctb],
Zhian N. Kamvar [ctb] ,
Consortium of Infectious Disease Modeling Hubs [cph]
Maintainer: Anna Krystalli <annakrystalli@googlemail.com>
Diff between hubUtils versions 1.2.1 dated 2026-07-15 and 1.3.0 dated 2026-10-29
DESCRIPTION | 13 +-- MD5 | 77 +++++++++++------- NAMESPACE | 9 ++ NEWS.md | 20 ++++ R/as_model_out_tbl.R | 5 - R/get_round_value_sets_config.R |only R/get_task_id_type.R |only R/read_model_metadata.R |only R/utils-checks.R |only R/utils-config.R | 54 ++++++++++-- R/utils-get_hub.R | 34 +++---- R/utils-output_type_ids.R |only R/utils-round-config.R | 81 +++++++++++++++---- R/utils-round_ids.R | 34 +++++-- man/create_s3_url.Rd | 2 man/get_config_tid.Rd | 2 man/get_derived_task_ids_config.Rd |only man/get_hub_timezone.Rd | 21 +++- man/get_round_config.Rd |only man/get_round_idx.Rd | 13 ++- man/get_round_model_tasks.Rd | 10 +- man/get_round_output_type_names.Rd |only man/get_round_task_id_names.Rd | 10 +- man/get_round_value_sets_config.Rd |only man/get_schema.Rd | 2 man/get_schema_url.Rd | 2 man/get_schema_valid_versions.Rd | 2 man/get_schema_version_latest.Rd | 2 man/get_task_id_names.Rd | 13 ++- man/get_task_id_type.Rd |only man/get_task_id_values.Rd |only man/get_version_config.Rd | 4 man/is_s3_base_fs.Rd | 2 man/read_config.Rd | 2 man/read_config_file.Rd | 2 man/read_model_metadata.Rd |only tests/testthat/_snaps/get_round_value_sets_config.md |only tests/testthat/_snaps/get_task_id_type.md |only tests/testthat/_snaps/read_model_metadata.md |only tests/testthat/_snaps/utils-config.md |only tests/testthat/_snaps/utils-round-config.md | 57 +++++++++++-- tests/testthat/_snaps/utils-round_ids.md | 15 +-- tests/testthat/helper-expectations.R |only tests/testthat/test-get_round_value_sets_config.R |only tests/testthat/test-get_task_id_type.R |only tests/testthat/test-read_model_metadata.R |only tests/testthat/test-utils-config.R |only tests/testthat/test-utils-get_hub.R | 19 ++++ tests/testthat/test-utils-round-config.R | 80 ++++++++++++++++++ tests/testthat/test-utils-round_ids.R | 61 ++++++++++++++ 50 files changed, 514 insertions(+), 134 deletions(-)
Title: Heteroscedasticity Diagnostics for Linear Models
Description: Provides a unified set of heteroscedasticity diagnostics for
linear-model workflows. It implements classical auxiliary-regression
tests, including those of White (1980) <doi:10.2307/1912934>, Breusch
and Pagan (1979) <doi:10.2307/1911963>, Koenker (1981)
<doi:10.1016/0304-4076(81)90062-2>, Goldfeld and Quandt (1965)
<doi:10.1080/01621459.1965.10480811> and Harvey (1976)
<doi:10.2307/1913974>; the score test of Cook and Weisberg (1983)
<doi:10.1093/biomet/70.1.1>; the ARCH test of Engle (1982)
<doi:10.2307/1912773>; and group-wise tests of equal variance, including
those of Bartlett (1937) <doi:10.1098/rspa.1937.0109>, Brown and Forsythe
(1974) <doi:10.1080/01621459.1974.10482955> and Hartley (1950)
<doi:10.2307/2332383>. Resampling and scalable variants, simulation
utilities, diagnostic visualisation and remediation helpers share a
consistent interface designed for reproducible statistical workflows and
integration with common [...truncated...]
Author: Diogo Ribeiro [aut, cre]
Maintainer: Diogo Ribeiro <dfr@esmad.ipp.pt>
Diff between heteroTests versions 0.11.2 dated 2026-09-26 and 0.16.0 dated 2026-10-29
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heteroTests-0.16.0/heteroTests/R/effect_sizes.R | 16 heteroTests-0.16.0/heteroTests/R/error_handling.R | 74 heteroTests-0.16.0/heteroTests/R/fitWLS.R | 810 + heteroTests-0.16.0/heteroTests/R/ggplot_extensions.R | 171 heteroTests-0.16.0/heteroTests/R/intelligent_recommendations.R | 123 heteroTests-0.16.0/heteroTests/R/interface.R |only heteroTests-0.16.0/heteroTests/R/messages.R | 36 heteroTests-0.16.0/heteroTests/R/model_context.R |only heteroTests-0.16.0/heteroTests/R/modern_diagnostics.R | 380 heteroTests-0.16.0/heteroTests/R/parallel_streams.R |only heteroTests-0.16.0/heteroTests/R/performArchLMTest.R | 32 heteroTests-0.16.0/heteroTests/R/performBPRandomEffectsTest.R | 64 heteroTests-0.16.0/heteroTests/R/performBPTest.R | 222 heteroTests-0.16.0/heteroTests/R/performBartlettTest.R | 108 heteroTests-0.16.0/heteroTests/R/performBoxMTest.R | 325 heteroTests-0.16.0/heteroTests/R/performBrownForsytheTest.R | 110 heteroTests-0.16.0/heteroTests/R/performCookWeisbergTest.R | 59 heteroTests-0.16.0/heteroTests/R/performDavidianCarrollTest.R | 30 heteroTests-0.16.0/heteroTests/R/performFlignerKilleenTest.R | 390 heteroTests-0.16.0/heteroTests/R/performGQTest.R | 166 heteroTests-0.16.0/heteroTests/R/performGlejserTest.R | 217 heteroTests-0.16.0/heteroTests/R/performHarrisonMcCabeTest.R |only heteroTests-0.16.0/heteroTests/R/performHartleyFmaxTest.R | 67 heteroTests-0.16.0/heteroTests/R/performHarveyTest.R | 60 heteroTests-0.16.0/heteroTests/R/performKoenkerTest.R | 198 heteroTests-0.16.0/heteroTests/R/performLeveneTest.R | 111 heteroTests-0.16.0/heteroTests/R/performMcLeodLiTest.R | 33 heteroTests-0.16.0/heteroTests/R/performNCVTest.R | 97 heteroTests-0.16.0/heteroTests/R/performOBrienTest.R | 100 heteroTests-0.16.0/heteroTests/R/performParkTest.R | 70 heteroTests-0.16.0/heteroTests/R/performPesaranTest.R | 262 heteroTests-0.16.0/heteroTests/R/performRESETTest.R | 75 heteroTests-0.16.0/heteroTests/R/performScatterDiagnostic.R | 44 heteroTests-0.16.0/heteroTests/R/performSpearmanTest.R | 29 heteroTests-0.16.0/heteroTests/R/performSpreadLevelTest.R | 19 heteroTests-0.16.0/heteroTests/R/performVarianceFormTest.R |only heteroTests-0.16.0/heteroTests/R/performWhiteTest.R | 706 + heteroTests-0.16.0/heteroTests/R/performance.R | 601 + heteroTests-0.16.0/heteroTests/R/plotDiagnostics.R | 133 heteroTests-0.16.0/heteroTests/R/quantile_regression_joint.R | 138 heteroTests-0.16.0/heteroTests/R/remediation.R | 10 heteroTests-0.16.0/heteroTests/R/reporting.R | 6 heteroTests-0.16.0/heteroTests/R/robust_implementations.R | 244 heteroTests-0.16.0/heteroTests/R/runDiagnostics.R | 39 heteroTests-0.16.0/heteroTests/R/runHeteroTests.R | 281 heteroTests-0.16.0/heteroTests/R/runPanelTests.R | 18 heteroTests-0.16.0/heteroTests/R/runTimeSeriesTests.R | 2 heteroTests-0.16.0/heteroTests/R/simulation_framework.R | 51 heteroTests-0.16.0/heteroTests/R/suite_summary.R |only heteroTests-0.16.0/heteroTests/R/test_factory.R | 109 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heteroTests-0.16.0/heteroTests/tests/testthat/test-integration.R | 5 heteroTests-0.16.0/heteroTests/tests/testthat/test-intelligent-recommendations.R | 95 heteroTests-0.16.0/heteroTests/tests/testthat/test-invalid-inputs.R | 2 heteroTests-0.16.0/heteroTests/tests/testthat/test-koenker-studentized.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-memory-usage.R | 2 heteroTests-0.16.0/heteroTests/tests/testthat/test-model-context.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-model-data-convention.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-model-eligibility.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-network-handling.R | 2 heteroTests-0.16.0/heteroTests/tests/testthat/test-otherTests.R | 2 heteroTests-0.16.0/heteroTests/tests/testthat/test-panel-reference.R | 70 heteroTests-0.16.0/heteroTests/tests/testthat/test-parallel-reproducibility.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-pass-a-reference.R | 148 heteroTests-0.16.0/heteroTests/tests/testthat/test-pass-b-reference.R | 17 heteroTests-0.16.0/heteroTests/tests/testthat/test-pass-c-reference.R | 11 heteroTests-0.16.0/heteroTests/tests/testthat/test-perform-error-handling.R | 4 heteroTests-0.16.0/heteroTests/tests/testthat/test-performRemainingTests.R | 4 heteroTests-0.16.0/heteroTests/tests/testthat/test-performWhiteTest.R | 636 + heteroTests-0.16.0/heteroTests/tests/testthat/test-plots.R | 10 heteroTests-0.16.0/heteroTests/tests/testthat/test-plotting.R | 21 heteroTests-0.16.0/heteroTests/tests/testthat/test-public-api.R | 235 heteroTests-0.16.0/heteroTests/tests/testthat/test-quantile-joint-reference.R | 43 heteroTests-0.16.0/heteroTests/tests/testthat/test-r-prefixed-and-test.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-reference-comparisons.R | 110 heteroTests-0.16.0/heteroTests/tests/testthat/test-reference-index.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-registry-systems.R | 73 heteroTests-0.16.0/heteroTests/tests/testthat/test-remediation.R | 23 heteroTests-0.16.0/heteroTests/tests/testthat/test-resampling-refits.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-return-contract.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-robust-methods.R | 124 heteroTests-0.16.0/heteroTests/tests/testthat/test-runHeteroTests.R | 50 heteroTests-0.16.0/heteroTests/tests/testthat/test-s3-classes.R | 61 heteroTests-0.16.0/heteroTests/tests/testthat/test-simulation-names.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-simulation_framework.R | 10 heteroTests-0.16.0/heteroTests/tests/testthat/test-statistical-accuracy.R | 2 heteroTests-0.16.0/heteroTests/tests/testthat/test-statistical_properties.R | 2 heteroTests-0.16.0/heteroTests/tests/testthat/test-streaming.R | 153 heteroTests-0.16.0/heteroTests/tests/testthat/test-suite-summary.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-survey-designs.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-szroeter-registry.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-utils.R | 8 heteroTests-0.16.0/heteroTests/tests/testthat/test-validation.R | 49 heteroTests-0.16.0/heteroTests/tests/testthat/test-variance-form.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-weighted-fits.R |only heteroTests-0.16.0/heteroTests/tests/testthat/test-weighted-resampling.R |only heteroTests-0.16.0/heteroTests/vignettes/comprehensive_guide.Rmd | 2 heteroTests-0.16.0/heteroTests/vignettes/performance_comparison_guide.Rmd | 2 heteroTests-0.16.0/heteroTests/vignettes/real_world_case_studies.Rmd | 13 heteroTests-0.16.0/heteroTests/vignettes/statistical_theory_and_implementation.Rmd | 31 heteroTests-0.16.0/heteroTests/vignettes/troubleshooting.Rmd | 6 heteroTests-0.16.0/heteroTests/vignettes/tutorial.Rmd | 30 heteroTests-0.16.0/heteroTests/vignettes/using_heteroTests.Rmd | 10 313 files changed, 21216 insertions(+), 6940 deletions(-)
Title: Read and Write Frictionless Data Packages
Description: Read and write Frictionless Data Packages. A 'Data Package'
(<https://datapackage.org/>) is a simple container format and standard to
describe and package a collection of (tabular) data. It is typically used to
publish FAIR (<https://www.gofair.foundation/fair-principles>) and open
datasets.
Author: Peter Desmet [aut, cre] ),
Damiano Oldoni [aut] ),
Pieter Huybrechts [aut] ),
Sanne Govaert [aut] ),
Kyle Husmann [ctb] ,
Research Institute for Nature and Forest [cph] ,
Research Foundation - Flanders [fnd] ,
NLnet foundation [fnd] ,
Beatriz Milz [ [...truncated...]
Maintainer: Peter Desmet <peter.desmet@inbo.be>
Diff between frictionless versions 1.3.0 dated 2026-07-31 and 2.0.1 dated 2026-10-29
frictionless-1.3.0/frictionless/tests/testthat/data/mark_decimal.csv |only frictionless-1.3.0/frictionless/tests/testthat/data/mark_decimal_group.csv |only frictionless-1.3.0/frictionless/tests/testthat/data/mark_default.csv |only frictionless-2.0.1/frictionless/DESCRIPTION | 21 frictionless-2.0.1/frictionless/MD5 | 180 +-- frictionless-2.0.1/frictionless/NAMESPACE | 2 frictionless-2.0.1/frictionless/NEWS.md | 37 frictionless-2.0.1/frictionless/R/add_properties.R |only frictionless-2.0.1/frictionless/R/add_resource.R | 70 - frictionless-2.0.1/frictionless/R/check_path.R | 18 frictionless-2.0.1/frictionless/R/check_schema.R | 6 frictionless-2.0.1/frictionless/R/col_types.R | 3 frictionless-2.0.1/frictionless/R/collectors.R | 4 frictionless-2.0.1/frictionless/R/create_package.R | 9 frictionless-2.0.1/frictionless/R/create_schema.R | 5 frictionless-2.0.1/frictionless/R/deprecated.R | 4 frictionless-2.0.1/frictionless/R/example_package.R | 20 frictionless-2.0.1/frictionless/R/locale.R | 21 frictionless-2.0.1/frictionless/R/read_from_path.R | 13 frictionless-2.0.1/frictionless/R/read_package.R | 12 frictionless-2.0.1/frictionless/R/read_resource.R | 2 frictionless-2.0.1/frictionless/R/resource.R | 2 frictionless-2.0.1/frictionless/R/schema.R | 11 frictionless-2.0.1/frictionless/R/upgrade_descriptor.R |only frictionless-2.0.1/frictionless/R/upgrade_package.R |only frictionless-2.0.1/frictionless/R/upgrade_resource.R |only frictionless-2.0.1/frictionless/R/upgrade_schema.R |only frictionless-2.0.1/frictionless/R/utils.R | 46 frictionless-2.0.1/frictionless/R/version.R | 49 frictionless-2.0.1/frictionless/R/write_package.R | 4 frictionless-2.0.1/frictionless/README.md | 14 frictionless-2.0.1/frictionless/inst/doc/data-package.R | 22 frictionless-2.0.1/frictionless/inst/doc/data-package.Rmd | 77 - frictionless-2.0.1/frictionless/inst/doc/data-package.html | 167 +-- frictionless-2.0.1/frictionless/inst/doc/data-resource.R | 46 frictionless-2.0.1/frictionless/inst/doc/data-resource.Rmd | 113 +- frictionless-2.0.1/frictionless/inst/doc/data-resource.html | 504 +++++---- frictionless-2.0.1/frictionless/inst/doc/frictionless.Rmd | 95 + frictionless-2.0.1/frictionless/inst/doc/frictionless.html | 258 ++-- frictionless-2.0.1/frictionless/inst/doc/table-dialect.R | 4 frictionless-2.0.1/frictionless/inst/doc/table-dialect.Rmd | 72 - frictionless-2.0.1/frictionless/inst/doc/table-dialect.html | 137 +- frictionless-2.0.1/frictionless/inst/doc/table-schema.R | 7 frictionless-2.0.1/frictionless/inst/doc/table-schema.Rmd | 127 +- frictionless-2.0.1/frictionless/inst/doc/table-schema.html | 431 +++++--- frictionless-2.0.1/frictionless/inst/extdata/v2/datapackage.json | 21 frictionless-2.0.1/frictionless/man/add_properties.Rd |only frictionless-2.0.1/frictionless/man/add_resource.Rd | 15 frictionless-2.0.1/frictionless/man/create_schema.Rd | 2 frictionless-2.0.1/frictionless/man/example_package.Rd | 15 frictionless-2.0.1/frictionless/man/frictionless-package.Rd | 3 frictionless-2.0.1/frictionless/man/read_package.Rd | 2 frictionless-2.0.1/frictionless/man/read_resource.Rd | 2 frictionless-2.0.1/frictionless/man/remove_resource.Rd | 1 frictionless-2.0.1/frictionless/man/schema.Rd | 2 frictionless-2.0.1/frictionless/man/upgrade_package.Rd |only frictionless-2.0.1/frictionless/man/version.Rd | 42 frictionless-2.0.1/frictionless/man/write_package.Rd | 4 frictionless-2.0.1/frictionless/tests/testthat/data/deployments_schema.json | 20 frictionless-2.0.1/frictionless/tests/testthat/data/deployments_schema.yaml | 59 - frictionless-2.0.1/frictionless/tests/testthat/data/deployments_schema_v1.json |only frictionless-2.0.1/frictionless/tests/testthat/data/mark.json | 87 + frictionless-2.0.1/frictionless/tests/testthat/data/mark_int_group.csv |only frictionless-2.0.1/frictionless/tests/testthat/data/mark_int_group_invalid.csv |only frictionless-2.0.1/frictionless/tests/testthat/data/mark_int_group_num_decimal.csv |only frictionless-2.0.1/frictionless/tests/testthat/data/mark_num_decimal.csv |only frictionless-2.0.1/frictionless/tests/testthat/data/mark_num_decimal_group.csv |only frictionless-2.0.1/frictionless/tests/testthat/data/mark_num_default.csv |only frictionless-2.0.1/frictionless/tests/testthat/data/schema_custom.json | 1 frictionless-2.0.1/frictionless/tests/testthat/data/type_datetime.csv | 4 frictionless-2.0.1/frictionless/tests/testthat/data/type_other.csv | 4 frictionless-2.0.1/frictionless/tests/testthat/data/types.json | 46 frictionless-2.0.1/frictionless/tests/testthat/data/valid_minimal.yml | 6 frictionless-2.0.1/frictionless/tests/testthat/test-add_properties.R |only frictionless-2.0.1/frictionless/tests/testthat/test-add_resource.R | 155 +- frictionless-2.0.1/frictionless/tests/testthat/test-check_data.R | 2 frictionless-2.0.1/frictionless/tests/testthat/test-check_package.R | 34 frictionless-2.0.1/frictionless/tests/testthat/test-check_path.R | 23 frictionless-2.0.1/frictionless/tests/testthat/test-check_schema.R | 48 frictionless-2.0.1/frictionless/tests/testthat/test-create_package.R | 46 frictionless-2.0.1/frictionless/tests/testthat/test-create_schema.R | 7 frictionless-2.0.1/frictionless/tests/testthat/test-deprecated.R | 2 frictionless-2.0.1/frictionless/tests/testthat/test-example_package.R | 14 frictionless-2.0.1/frictionless/tests/testthat/test-print.datapackage.R | 18 frictionless-2.0.1/frictionless/tests/testthat/test-read_package.R | 45 frictionless-2.0.1/frictionless/tests/testthat/test-read_resource.R | 517 +++++----- frictionless-2.0.1/frictionless/tests/testthat/test-remove_resource.R | 15 frictionless-2.0.1/frictionless/tests/testthat/test-resource.R | 33 frictionless-2.0.1/frictionless/tests/testthat/test-resource_names.R | 10 frictionless-2.0.1/frictionless/tests/testthat/test-upgrade_descriptor.R |only frictionless-2.0.1/frictionless/tests/testthat/test-upgrade_package.R |only frictionless-2.0.1/frictionless/tests/testthat/test-upgrade_resource.R |only frictionless-2.0.1/frictionless/tests/testthat/test-upgrade_schema.R |only frictionless-2.0.1/frictionless/tests/testthat/test-utils.R | 42 frictionless-2.0.1/frictionless/tests/testthat/test-version.R | 188 +++ frictionless-2.0.1/frictionless/tests/testthat/test-write_package.R | 198 ++- frictionless-2.0.1/frictionless/vignettes/data-package.Rmd | 77 - frictionless-2.0.1/frictionless/vignettes/data-resource.Rmd | 113 +- frictionless-2.0.1/frictionless/vignettes/frictionless.Rmd | 95 + frictionless-2.0.1/frictionless/vignettes/frictionless.Rmd.orig | 34 frictionless-2.0.1/frictionless/vignettes/table-dialect.Rmd | 72 - frictionless-2.0.1/frictionless/vignettes/table-schema.Rmd | 127 +- 102 files changed, 3008 insertions(+), 1856 deletions(-)
Title: Kernel Ridge Regression using 'RcppArmadillo'
Description: Provides core computational operations in C++ via 'RcppArmadillo', enabling faster performance than pure R, improved numerical stability, and parallel execution with OpenMP where available. On systems without OpenMP support, the package automatically falls back to single-threaded execution with no user configuration required. For efficient model selection, it integrates with 'CVST' to provide sequential-testing cross-validation and additionally supports restricted maximum likelihood (REML) for continuous optimization of the regularization parameter. The package offers a unified interface for exact kernel ridge regression and three scalable approximations—Nyström, Pivoted Cholesky, and Random Fourier Features—allowing analyses with substantially larger sample sizes than are feasible with exact KRR. It also integrates with the 'tidymodels' ecosystem via the 'parsnip' model specification 'krr_reg', and the S3 method tunable.krr_reg(). To understand the theoretical background, one can refe [...truncated...]
Author: Gyeongmin Kim [aut] ,
Seyoung Lee [aut] ,
Miyoung Jang [aut] ,
Kwan-Young Bak [aut, cre, cph]
Maintainer: Kwan-Young Bak <kybak@sungshin.ac.kr>
Diff between FastKRR versions 0.2.1 dated 2026-07-21 and 0.2.2 dated 2026-10-29
DESCRIPTION | 10 +- MD5 | 54 ++++++++-------- R/CVST_linkfunction.R | 107 +++++++++++++++++++++++++++----- R/RcppExports.R | 10 +- R/approx_kernel.R | 13 ++- R/error.R | 59 +++++++++++++---- R/link2tidymodels.R | 6 - R/make_kernel.R | 10 +- R/param.R | 2 R/print.R | 2 R/rff_random.R | 2 README.md | 6 - man/approx_kernel.Rd | 11 +-- man/error.krr.Rd | 20 ++++- man/fastkrr.Rd | 42 +++++++++--- man/fastkrr_fit_wrapper.Rd | 2 man/krr_reg.Rd | 4 - man/make_kernel.Rd | 10 +- man/param.krr.Rd | 2 man/predict.krr.Rd | 4 + man/print.approx_kernel.Rd | 2 src/Makevars | 2 src/Makevars.win | 2 src/kernel.cpp | 4 - src/nystorm.cpp | 4 - src/rff.cpp | 4 - tests/testthat/test-CVST_linkfunction.R | 82 ++++++++++++++++++++++++ tests/testthat/test-error.R | 34 ++++++++++ 28 files changed, 385 insertions(+), 125 deletions(-)
Title: Calculate and Visualize Degree-Days for Pest Monitoring
Description: Combines pest trap observations with daily temperatures to
calculate and visualize cumulative degree-days. Temperature inputs
include 'Daymet' <https://daymet.ornl.gov>,
'Open-Meteo' <https://open-meteo.com/>, reports from the California
Irrigation Management Information System ('CIMIS')
<https://cimis.water.ca.gov>, and user-supplied daily weather data.
Degree-days are calculated using the simple-average method with
either an upper threshold applied to the daily mean or an explicitly
selected calculation without an upper cutoff. The first positive
trap count defines the biofix for every pest, with accumulation
beginning on the following day. Negative daily degree-day values
are set to zero. Users can provide temperature thresholds and
optional thermal reference values. Thermal reference
markers and their multiples do not independently establish flight
or generation identities. Complete daily calculations and weather
provenance are retained with the output to support [...truncated...]
Author: Santosh Bhandari [aut, cre],
Lalit Kharel [aut],
Mahesh Ghimire [aut]
Maintainer: Santosh Bhandari <santoshbhandari4556@gmail.com>
Diff between TrackTrap versions 1.0.1 dated 2026-08-20 and 1.1.0 dated 2026-10-29
DESCRIPTION | 44 +- MD5 | 39 + NAMESPACE | 1 NEWS.md | 136 ++++++ R/TrackTrap-package.R | 1 R/data.R | 32 + R/phenology.R | 592 ++++++++++++++++-------------- data/pest_thresholds.rda |binary inst/doc/cimis-manual-workflow.R | 90 +++- inst/doc/cimis-manual-workflow.html | 265 +++++++++++-- inst/doc/cimis-manual-workflow.rmd | 192 ++++++++- inst/extdata |only man/TrackTrap-package.Rd | 4 man/calc_pest_phenology.Rd | 112 +++-- man/fetch_open_meteo.Rd | 50 +- man/pest_thresholds.Rd | 33 + man/plot_trap_phenology.Rd | 80 ++-- tests/testthat/helper-cimis.R |only tests/testthat/test-calc_pest_phenology.R | 162 ++++++-- tests/testthat/test-pest_thresholds.R | 56 ++ tests/testthat/test-phenology.R |only vignettes/cimis-manual-workflow.rmd | 192 ++++++++- 22 files changed, 1488 insertions(+), 593 deletions(-)
Title: Access the 'Open Data API' of Pernambuco Court of Accounts
Description: An R interface to the 'Open Data API' of the Tribunal de Contas do
Estado de Pernambuco (TCE-PE), the Court of Accounts of the State of
Pernambuco, Brazil. Provides tidy, ready-to-use functions to query public
data on revenues, expenditures, commitments, procurement, contracts,
agreements, public works, legal processes, personnel and reference tables
for all state and municipal government entities in Pernambuco. All results
are returned as tibbles with column names converted to 'snake_case' by
default. Uses 'httr2' for HTTP requests and 'cli' for user-friendly
messages. See <https://sistemas.tcepe.tc.br/DadosAbertos/> for the API
documentation.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Julia Nascimento Barreto [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between tceper versions 0.1.4 dated 2026-06-01 and 0.1.5 dated 2026-10-29
DESCRIPTION | 37 - MD5 | 57 +- NAMESPACE | 1 NEWS.md | 31 + R/introspection.R | 11 R/remessa.R | 14 README.md | 6 inst/doc/endpoints-reference.html | 4 inst/extdata/tcepe_dados_abertos_catalogo.json | 595 ++++++++++++++++--------- man/figures/logo.svg | 4 man/tce_benefit_types.Rd | 1 man/tce_budget_statuses.Rd | 1 man/tce_catalog.Rd | 2 man/tce_legal_instrument_documents.Rd | 1 man/tce_legal_instrument_items.Rd | 1 man/tce_legal_instrument_participants.Rd | 1 man/tce_legal_instrument_terms.Rd |only man/tce_legal_instruments.Rd | 1 man/tce_procurement_process_budget.Rd | 1 man/tce_procurement_process_documents.Rd | 1 man/tce_procurement_process_participants.Rd | 1 man/tce_procurement_processes.Rd | 1 man/tce_reference_codes.Rd | 1 man/tce_reference_dates.Rd | 1 man/tce_reference_sources.Rd | 1 man/tce_remessa_works.Rd | 1 man/tce_remessa_works_execution.Rd | 1 man/tce_remessa_works_geometry.Rd | 1 man/tce_update_indices.Rd | 1 man/tceper-package.Rd | 13 30 files changed, 529 insertions(+), 263 deletions(-)
Title: Connecting Stream Mining Components Using Sockets and Web
Services
Description: Adds functionality to connect stream mining components from the stream package using sockets and Web services. The package can be used to create distributed workflows and plumber-based Web services that can be deployed on most common cloud services.
Author: Michael Hahsler [aut, cre, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
This is a re-admission after prior archival of version 0.1.0 dated 2026-10-23
Diff between streamConnect versions 0.1.0 dated 2026-10-23 and 0.1.1 dated 2026-10-29
DESCRIPTION | 8 +- MD5 | 44 +++++++-------- NAMESPACE | 1 NEWS.md | 4 + R/DSC_WebService.R | 44 ++++++++------- R/DSD_ReadSocket.R | 50 +++++++++-------- R/DSD_ReadWebService.R | 52 +++++++++-------- R/has_localhost_server.R |only R/publish_DSC_via_WebService.R | 90 ++++++++++++++++--------------- R/publish_DSD_via_Socket.R | 50 +++++++++-------- R/publish_DSD_via_WebService.R | 110 +++++++++++++++++++------------------- README.md | 11 ++- inst/doc/streamConnect.R | 23 +++++-- inst/doc/streamConnect.Rmd | 24 +++++--- inst/doc/streamConnect.html | 76 +++++++++++++------------- man/DSC_WebService.Rd | 42 +++++++------- man/DSD_ReadSocket.Rd | 50 +++++++++-------- man/DSD_ReadWebService.Rd | 52 +++++++++-------- man/has_localhost_server.Rd |only man/publish_DSC_via_WebService.Rd | 90 ++++++++++++++++--------------- man/publish_DSD_via_Socket.Rd | 50 +++++++++-------- man/publish_DSD_via_WebService.Rd | 110 +++++++++++++++++++------------------- man/streamConnect-package.Rd | 4 - vignettes/streamConnect.Rmd | 24 +++++--- 24 files changed, 544 insertions(+), 465 deletions(-)
Title: Robust Test Statistics for Structural Equation Models
Description: Computes robust p-values for overall fit and nested comparisons of
structural equation models fitted with 'lavaan'. Implements penalized
eigenvalue block averaging and penalized regression (Foldnes, Moss,
Grønneberg, 2025) <doi:10.1080/10705511.2024.2372028>, including their
extension to nested models (Foldnes, Grønneberg, Moss, 2026)
<doi:10.3758/s13428-026-02968-4>, alongside familiar corrections such as
Satorra-Bentler. Supported settings include complete-data ML, GLS, and ULS,
categorical DWLS and ULS, and full-information maximum likelihood with one
or several groups. Score and criterion-difference tests of parameter
restrictions are also available, including restrictions in misspecified
models.
Author: Jonas Moss [aut, cre] ,
Njal Foldnes [ctb] ,
Steffen Groenneberg [ctb]
Maintainer: Jonas Moss <jonas.moss.statistics@gmail.com>
Diff between semTests versions 1.0.0 dated 2026-07-19 and 2.0.0 dated 2026-10-29
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Title: Analyse Citation Data from Google Scholar
Description: Provides tools to retrieve, analyse, and format publication and
citation data from Google Scholar profiles. It supports profile lookup,
publication records, citation histories, scholar comparison, coauthor
networks, journal ranking queries, CV-ready publication lists, and citation
metric summaries.
Author: Guangchuang Yu [aut, cre] ,
James Keirstead [aut],
Gregory Jefferis [aut] ,
Gordon Getzinger [ctb],
Jorge Cimentada [ctb],
Max Czapanskiy [ctb],
Dominique Makowski [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between scholar versions 1.0.0 dated 2026-07-07 and 1.0.1 dated 2026-10-29
DESCRIPTION | 14 LICENSE | 4 MD5 | 132 ++- NAMESPACE | 126 ++- NEWS | 152 ++-- NEWS.md | 125 +-- R/citing.R |only R/coauthors.R | 187 ++--- R/compare.r | 234 +++--- R/data.R | 90 +- R/format_publications.R | 94 +- R/getCompleteAuthors.R | 158 ++-- R/h_index_history.R |only R/openalex.R |only R/predict.r | 134 +-- R/publications.r | 1111 ++++++++++++++------------------ R/scholar-package.r | 159 +++- R/scholar.r | 751 +++++++++++---------- R/utils.R | 778 +++++++++++++++++++--- R/zzz.r | 8 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 30 inst/WORDLIST | 14 inst/doc/scholar.R | 261 ++++--- inst/doc/scholar.html | 949 ++++++++++++++------------- inst/doc/scholar.qmd | 114 +++ man/author_position.Rd | 70 +- man/compare_scholar_careers.Rd | 62 - man/compare_scholars.Rd | 62 - man/format_authors.Rd | 28 man/format_publications.Rd | 56 - man/get_article_cite_history.Rd | 40 - man/get_article_scholar_url.Rd | 38 - man/get_citation_history.Rd | 52 - man/get_citing_articles.Rd |only man/get_coauthors.Rd | 92 +- man/get_complete_authors.Rd | 60 - man/get_h_index_history.Rd |only man/get_journalrank.Rd | 35 - man/get_num_articles.Rd | 34 man/get_num_distinct_journals.Rd | 46 - man/get_num_top_journals.Rd | 54 - man/get_oldest_article.Rd | 34 man/get_profile.Rd | 86 +- man/get_publication_data_extended.Rd | 42 - man/get_publication_date.Rd | 42 - man/get_publication_url.Rd | 42 - man/get_publications.Rd | 114 +-- man/get_scholar_id.Rd | 66 + man/get_scholar_resp.Rd | 46 - man/plot_coauthors.Rd | 58 - man/predict_h_index.Rd | 106 +-- man/scholar-package.Rd | 219 ++++-- man/search_openalex_authors.Rd |only man/search_scholar_ids.Rd | 5 man/set_scholar_cookie.Rd |only man/set_scholar_mirror.Rd | 40 - man/tidy_id.Rd | 34 tests/spelling.R | 6 tests/testthat.R | 8 tests/testthat/_problems |only tests/testthat/fixtures |only tests/testthat/test-citing-articles.R |only tests/testthat/test-coauthors.R | 88 ++ tests/testthat/test-h-index-history.R |only tests/testthat/test-openalex.R |only tests/testthat/test-scholar-id-search.R | 42 + tests/testthat/test-scholar-response.R | 400 +++++++++++ tests/testthat/test-scholar-session.R |only tests/testthat/test-scholar.R | 89 +- tests/testthat/testthat-problems.rds |only vignettes/scholar.qmd | 114 +++ 73 files changed, 4838 insertions(+), 3197 deletions(-)