Tue, 16 Sep 2014

Package RcmdrPlugin.NMBU updated to version 1.7.4 with previous version 1.7.3 dated 2014-06-30

Title: R Commander Plug-In for Statistics at NMBU
Description: This package provides an Rcmdr "plug-in" extending some functions of linear models and providing an interface to PLS, LDA and QDA.
Author: Kristian Hovde Liland, Solve Sæbø
Maintainer: Kristian Hovde Liland

Diff between RcmdrPlugin.NMBU versions 1.7.3 dated 2014-06-30 and 1.7.4 dated 2014-09-16

 DESCRIPTION                     |   12 ++++++------
 MD5                             |   14 +++++++-------
 R/NMBU.GUI.File.R               |    6 +++++-
 R/NMBU.GUI.Models.R             |    6 ++++++
 R/NMBU.Utilities.R              |   11 +++++++++++
 R/globals.R                     |    5 ++++-
 inst/etc/menus.txt              |    7 ++-----
 man/RcmdrPlugin.NMBU-package.Rd |    2 ++
 8 files changed, 43 insertions(+), 20 deletions(-)

More information about RcmdrPlugin.NMBU at CRAN
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Package mixlm updated to version 1.0.6 with previous version 1.0.5 dated 2014-06-29

Title: Mixed model ANOVA and statistics for education
Description: The main functions mask call to mixed models by least squares or REML by adding r() function to formulas of lm and glm. It also has a collection of text book statistics for higher education.
Author: Kristian Hovde Liland, Solve Sæbø
Maintainer: Kristian Hovde Liland

Diff between mixlm versions 1.0.5 dated 2014-06-29 and 1.0.6 dated 2014-09-16

 DESCRIPTION        |   10 +++---
 MD5                |   13 ++++---
 NAMESPACE          |    3 +
 R/globals.R        |    2 -
 R/lm.R             |    2 -
 R/mixlm.R          |    4 +-
 R/statistics.R     |   87 +++++++++++++++++++++++++++++++++++++++++++----------
 man/CIgrandMean.Rd |only
 8 files changed, 91 insertions(+), 30 deletions(-)

More information about mixlm at CRAN
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Package mclust updated to version 4.4 with previous version 4.3 dated 2014-03-31

Title: Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation
Description: Normal Mixture Modeling fitted via EM algorithm for Model-Based Clustering, Classification, and Density Estimation, including Bayesian regularization.
Author: Chris Fraley, Adrian Raftery and Luca Scrucca
Maintainer: Luca Scrucca

Diff between mclust versions 4.3 dated 2014-03-31 and 4.4 dated 2014-09-16

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 mclust-4.4/mclust/DESCRIPTION                             |    8 
 mclust-4.4/mclust/MD5                                     |   61 
 mclust-4.4/mclust/NAMESPACE                               |    2 
 mclust-4.4/mclust/R/densityMclust.R                       |  220 +--
 mclust-4.4/mclust/R/init.R                                |only
 mclust-4.4/mclust/R/mclust.R                              |  943 +++-----------
 mclust-4.4/mclust/R/mclustdr.R                            |  109 -
 mclust-4.4/mclust/R/zzz.R                                 |   20 
 mclust-4.4/mclust/data/Baudry_etal_2010_JCGS_examples.rda |binary
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 mclust-4.4/mclust/data/chevron.rda                        |binary
 mclust-4.4/mclust/data/cross.rda                          |binary
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 mclust-4.4/mclust/data/wreath.rda                         |binary
 mclust-4.4/mclust/inst/NEWS                               |   39 
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 mclust-4.4/mclust/man/Mclust.Rd                           |    7 
 mclust-4.4/mclust/man/MclustDR.Rd                         |    8 
 mclust-4.4/mclust/man/cdfMclust.Rd                        |   22 
 mclust-4.4/mclust/man/clustCombi.Rd                       |    4 
 mclust-4.4/mclust/man/combiPlot.Rd                        |    9 
 mclust-4.4/mclust/man/densityMclust.Rd                    |    4 
 mclust-4.4/mclust/man/densityMclust.diagnostic.Rd         |   15 
 mclust-4.4/mclust/man/hc.Rd                               |    4 
 mclust-4.4/mclust/man/imputeData.Rd                       |   16 
 mclust-4.4/mclust/man/imputePairs.Rd                      |   11 
 mclust-4.4/mclust/man/mclust.options.Rd                   |   20 
 mclust-4.4/mclust/man/nVarParams.Rd                       |    2 
 mclust-4.4/mclust/man/plot.densityMclust.Rd               |    4 
 mclust-4.4/mclust/man/predict.Mclust.Rd                   |    2 
 34 files changed, 572 insertions(+), 958 deletions(-)

More information about mclust at CRAN
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Package LiblineaR updated to version 1.80-10 with previous version 1.80-7 dated 2013-06-24

Title: Linear Predictive Models Based On The liblinear C/C++ Library.
Description: LiblineaR is a wrapper around the liblinear C/C++ library for machine learning. liblinear is a linear classifier for data with millions of instances and features. It supports L2-regularized classifiers (such as L2-loss linear SVM, L1-loss linear SVM, and logistic regression) as well as L1-regularized classifiers (such as L2-loss linear SVM and logistic regression). The main features of LiblineaR include multi-class classification (one-vs-the rest, and Crammer & Singer method), cross validation for model selection, probability estimates (logistic regression only) or weights for unbalanced data. The estimation of the models is particularly fast as compared to other libraries. For more information on the C/C++ liblinear library itself, refer to R.-E. Fan, K.-W. Chang, C.-J. Hsieh, X.-R. Wang, and C.-J. Lin. liblinear: A Library for Large Linear Classification, Journal of Machine Learning Research 9(2008), 1871-1874, available at http://www.csie.ntu.edu.tw/~cjlin/liblinear . The two first blocks of the package version indicates which version of liblinear is currently supported by LiblineaR. For example: 1.32-14 means that the package supports the version 1.32 of liblinear.
Author: Thibault Helleputte ; Pierre Gramme
Maintainer: Thibault Helleputte

Diff between LiblineaR versions 1.80-7 dated 2013-06-24 and 1.80-10 dated 2014-09-16

 DESCRIPTION              |   37 +++++++++----------------------------
 MD5                      |   18 +++++++++---------
 NEWS                     |   28 ++++++++++++++++++++++++++++
 R/LiblineaR.R            |   35 ++++++++++++++++++-----------------
 R/predict.R              |    3 ++-
 README                   |    2 +-
 man/LiblineaR.Rd         |    4 ++--
 man/predict.LiblineaR.Rd |    4 ++--
 src/linear.cpp           |   25 +++++++++++++++++++------
 src/trainLinear.c        |   19 ++++++++++++++++---
 10 files changed, 106 insertions(+), 69 deletions(-)

More information about LiblineaR at CRAN
Permanent link

Package hypergea updated to version 1.2.3 with previous version 1.2.1 dated 2014-09-09

Title: Hypergeometric tests
Description: Performs (exact) hypergeometric tests on IxJ and 2x2x2 contingency tables using parallelised C code
Author: Markus Boenn
Maintainer: Markus Boenn

Diff between hypergea versions 1.2.1 dated 2014-09-09 and 1.2.3 dated 2014-09-16

 DESCRIPTION              |   10 ++--
 MD5                      |   20 ++++-----
 R/hypergea-internal.R    |   15 ++++---
 R/hypergeom.test.R       |   23 +++++++----
 inst/NEWS.Rd             |   17 ++++++++
 man/getExpectedValues.Rd |    2 
 man/getMargins.Rd        |    4 -
 man/hypergea-package.Rd  |   12 +----
 man/hypergeom.test.Rd    |   11 ++---
 src/hypergeom_2x2x2.cpp  |   36 +++++++++++------
 src/hypergeom_IxJ.cpp    |   96 +++++++++++++++++++++++++++++++++++++----------
 11 files changed, 167 insertions(+), 79 deletions(-)

More information about hypergea at CRAN
Permanent link

Package PerformanceAnalytics updated to version 1.4.3541 with previous version 1.1.0 dated 2013-01-29

Title: Econometric tools for performance and risk analysis
Description: Collection of econometric functions for performance and risk analysis. This package aims to aid practitioners and researchers in utilizing the latest research in analysis of non-normal return streams. In general, it is most tested on return (rather than price) data on a regular scale, but most functions will work with irregular return data as well, and increasing numbers of functions will work with P&L or price data where possible.
Author: Brian G. Peterson [cre, aut, cph], Peter Carl [aut, cph], Kris Boudt [ctb, cph], Ross Bennett [ctb], Joshua Ulrich [ctb], Eric Zivot [ctb], Matthieu Lestel [ctb], Kyle Balkissoon [ctb], Diethelm Wuertz [ctb]
Maintainer: Brian G. Peterson

Diff between PerformanceAnalytics versions 1.1.0 dated 2013-01-29 and 1.4.3541 dated 2014-09-16

 PerformanceAnalytics-1.1.0/PerformanceAnalytics/ChangeLog                                                              |only
 PerformanceAnalytics-1.1.0/PerformanceAnalytics/R/Return.index.R                                                       |only
 PerformanceAnalytics-1.1.0/PerformanceAnalytics/R/Return.wealthindex.R                                                 |only
 PerformanceAnalytics-1.1.0/PerformanceAnalytics/R/decomposeMVaR.R                                                      |only
 PerformanceAnalytics-1.1.0/PerformanceAnalytics/R/expectedShortFallFunctions.r                                         |only
 PerformanceAnalytics-1.1.0/PerformanceAnalytics/R/rCornishFisher.r                                                     |only
 PerformanceAnalytics-1.1.0/PerformanceAnalytics/R/valueAtRiskFunctions.r                                               |only
 PerformanceAnalytics-1.1.0/PerformanceAnalytics/codeblock.txt                                                          |only
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 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/DESCRIPTION                                                         |   66 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/MD5                                                                 |  618 +-
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/NAMESPACE                                                           |  697 +--
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/NEWS                                                                |   41 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/ActivePremium.R                                                   |   37 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/AdjustedSharpeRatio.R                                             |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/AppraisalRatio.R                                                  |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/BernadoLedoitratio.R                                              |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/BurkeRatio.R                                                      |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/CAPM.alpha.R                                                      |   23 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/CAPM.beta.R                                                       |   28 
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 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/CAPM.epsilon.R                                                    |   20 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/CAPM.jensenAlpha.R                                                |   19 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/CAPM.utils.R                                                      |   31 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/CalmarRatio.R                                                     |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/CoMoments.R                                                       |   23 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/DRatio.R                                                          |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/DownsideDeviation.R                                               |   14 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/DownsideFrequency.R                                               |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/DrawdownPeak.R                                                    |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Drawdowns.R                                                       |    4 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/ES.R                                                              |   12 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/FamaBeta.R                                                        |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Frequency.R                                                       |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/HerfindahlIndex.R                                                 |    2 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/HurstIndex.R                                                      |   76 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/InformationRatio.R                                                |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Kappa.R                                                           |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/KellyRatio.R                                                      |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/M2Sortino.R                                                       |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/MSquared.R                                                        |   10 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/MSquaredExcess.R                                                  |   19 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/MarketTiming.R                                                    |only
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/MartinRatio.R                                                     |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/MeanAbsoluteDeviation.R                                           |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Modigliani.R                                                      |only
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/MultivariateMoments.R                                             |   71 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/NetSelectivity.R                                                  |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Omega.R                                                           |    8 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/OmegaExcessReturn.R                                               |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/OmegaSharpeRatio.R                                                |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/PainIndex.R                                                       |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/PainRatio.R                                                       |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/PortfolioRisk.R                                                   |   11 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/ProspectRatio.R                                                   |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Return.Geltner.R                                                  |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Return.annualized.R                                               |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Return.annualized.excess.R                                        |only
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Return.calculate.R                                                |   12 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Return.clean.R                                                    |   12 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Return.cumulative.R                                               |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Return.excess.R                                                   |   10 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Return.portfolio.R                                                |  657 +-
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Return.read.R                                                     |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Return.relative.R                                                 |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/Selectivity.R                                                     |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/SemiDeviation.R                                                   |    4 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/SharpeRatio.R                                                     |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/SharpeRatio.annualized.R                                          |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/SkewnessKurtosisRatio.R                                           |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/SmoothingIndex.R                                                  |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/SortinoRatio.R                                                    |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/SpecificRisk.R                                                    |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/StdDev.R                                                          |    8 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/StdDev.annualized.R                                               |    9 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/SystematicRisk.R                                                  |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/TotalRisk.R                                                       |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/TrackingError.R                                                   |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/TreynorRatio.R                                                    |   18 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/UlcerIndex.R                                                      |    4 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/UpDownRatios.R                                                    |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/UpsideFrequency.R                                                 |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/UpsidePotentialRatio.R                                            |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/UpsideRisk.R                                                      |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/VaR.Marginal.R                                                    |    4 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/VaR.R                                                             |   23 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/VolatilitySkewness.R                                              |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/apply.fromstart.R                                                 |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/apply.rolling.R                                                   |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.ACF.R                                                       |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.ACFplus.R                                                   |    4 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.Bar.R                                                       |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.BarVaR.R                                                    |   11 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.Boxplot.R                                                   |    9 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.CaptureRatios.R                                             |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.Correlation.R                                               |   16 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.CumReturns.R                                                |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.Drawdown.R                                                  |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.ECDF.R                                                      |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.Events.R                                                    |   11 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.Histogram.R                                                 |   24 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.QQPlot.R                                                    |    8 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.Regression.R                                                |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.RelativePerformance.R                                       |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.RiskReturnScatter.R                                         |   18 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.RollingCorrelation.R                                        |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.RollingMean.R                                               |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.RollingPerformance.R                                        |    8 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.RollingQuantileRegression.R                                 |   10 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.RollingRegression.R                                         |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.Scatter.R                                                   |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.SnailTrail.R                                                |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.StackedBar.R                                                |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.TimeSeries.R                                                |   32 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/chart.VaRSensitivity.R                                            |   12 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/charts.Bar.R                                                      |    4 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/charts.BarVaR.R                                                   |    4 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/charts.PerformanceSummary.R                                       |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/charts.RollingPerformance.R                                       |   12 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/charts.RollingRegression.R                                        |    4 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/charts.TimeSeries.R                                               |    4 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/checkData.R                                                       |   12 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/findDrawdowns.R                                                   |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/kurtosis.R                                                        |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/legend.R                                                          |   41 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/lpm.R                                                             |only
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/maxDrawdown.R                                                     |   68 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/mean.utils.R                                                      |   14 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/na.skip.R                                                         |    4 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/replaceTabs.R                                                     |    4 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/skewness.R                                                        |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/sortDrawdowns.R                                                   |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.AnnualizedReturns.R                                         |   13 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.Arbitrary.R                                                 |    9 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.Autocorrelation.R                                           |   12 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.CAPM.R                                                      |   64 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.CalendarReturns.R                                           |   15 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.CaptureRatios.R                                             |   16 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.Correlation.R                                               |   11 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.Distributions.R                                             |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.DownsideRisk.R                                              |   11 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.DownsideRiskRatio.R                                         |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.Drawdowns.R                                                 |   11 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.DrawdownsRatio.R                                            |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.HigherMoments.R                                             |   11 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.InformationRatio.R                                          |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.MonthlyReturns.R                                            |   10 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.ProbOutperformance.R                                        |only
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.RollingPeriods.R                                            |   14 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.SpecificRisk.R                                              |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.UpDownRatios.R                                              |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/table.Variability.R                                               |    6 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/textplot.R                                                        |   24 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/zerofill.R                                                        |   24 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/R/zzz.R                                                             |   15 
 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/build                                                               |only
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 PerformanceAnalytics-1.4.3541/PerformanceAnalytics/data/prices.rda                                                     |binary
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Permanent link

Package SSDforR updated to version 1.4.7 with previous version 1.4.6 dated 2014-07-30

Title: SSD for R to analyze single system data
Description: Package to visually and statistically analyze single system data
Author: Charles Auerbach,PHD Wendy Zeitlin Schudrich,PHD Wurzweiler School of Social Work
Maintainer: Charles Auerbach

Diff between SSDforR versions 1.4.6 dated 2014-07-30 and 1.4.7 dated 2014-09-16

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Permanent link

Package ncdf4 updated to version 1.13 with previous version 1.12 dated 2014-06-19

Title: Interface to Unidata netCDF (version 4 or earlier) format data files
Description: This package provides a high-level R interface to data files written using Unidata's netCDF library (version 4 or earlier), which are binary data files that are portable across platforms and include metadata information in addition to the data sets. Using this package, netCDF files (either version 4 or "classic" version 3) can be opened and data sets read in easily. It is also easy to create new netCDF dimensions, variables, and files, in either version 3 or 4 format, and manipulate existing netCDF files. This package replaces the former ncdf package, which only worked with netcdf version 3 files. For various reasons the names of the functions have had to be changed from the names in the ncdf package. The old ncdf package is still available at the URL given below, if you need to have backward compatibility. It should be possible to have both the ncdf and ncdf4 packages installed simultaneously without a problem. However, the ncdf package does not provide an interface for netcdf version 4 files.
Author: David Pierce
Maintainer: David Pierce

Diff between ncdf4 versions 1.12 dated 2014-06-19 and 1.13 dated 2014-09-16

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More information about ncdf4 at CRAN
Permanent link

Mon, 15 Sep 2014

Package qat updated to version 0.73 with previous version 0.72 dated 2013-06-18

Title: Quality Assurance Toolkit
Description: This package delivers some functions to provide a scientific quality assurance of meteorological data.
Author: Andre Duesterhus
Maintainer: Andre Duesterhus

Diff between qat versions 0.72 dated 2013-06-18 and 0.73 dated 2014-09-15

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More information about qat at CRAN
Permanent link

Package mrds updated to version 2.1.8 with previous version 2.1.6 dated 2014-06-10

Title: Mark-Recapture Distance Sampling (mrds)
Description: This package implements mark-recapture distance sampling methods as described in D.L. Borchers, W. Zucchini and Fewster, R.M. (1988), "Mark-recapture models for line transect surveys", Biometrics 54: 1207-1220. and Laake, J.L. (1999) "Distance sampling with independent observers: Reducing bias from heterogeneity by weakening the conditional independence assumption." in Amstrup, G.W., Garner, S.C., Laake, J.L., Manly, B.F.J., McDonald, L.L. and Robertson, D.G. (eds) "Marine mammal survey and assessment methods", Balkema, Rotterdam: 137-148 and Borchers, D.L., Laake, J.L., Southwell, C. and Paxton, C.L.G. "Accommodating unmodelled heterogeneity in double-observer distance sampling surveys". 2006. Biometrics 62:372-378.)
Author: Jeff Laake , David Borchers , Len Thomas , David Miller and Jon Bishop
Maintainer: David Miller

Diff between mrds versions 2.1.6 dated 2014-06-10 and 2.1.8 dated 2014-09-15

 mrds-2.1.6/mrds/R/tablecgf.R                       |only
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More information about mrds at CRAN
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Package gamlr updated to version 1.12 with previous version 1.11-3 dated 2014-04-07

Title: Gamma Lasso Regression
Description: This package implements the gamma lasso algorithm for regularization paths corresponding to a range of non-convex cost functions between L0 and L1 norms. As much as possible, usage is analogous to that for the glmnet package (which does the same thing for penalization between L1 and L2 norms).
Author: Matt Taddy
Maintainer: Matt Taddy

Diff between gamlr versions 1.11-3 dated 2014-04-07 and 1.12 dated 2014-09-15

 DESCRIPTION     |    9 +-
 MD5             |   20 +++---
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More information about gamlr at CRAN
Permanent link

Package dsm updated to version 2.2.5 with previous version 2.2.4 dated 2014-06-17

Title: Density surface modelling of distance sampling data
Description: This library implements density surface modelling of line transect data, based on the methods of Hedley et al. (2004). Some recent developments in the literature have also be incorporated. Outputs are point and interval estimates of population abundance and density. Please note that this version of dsm WILL NOT work with the Windows package DISTANCE earlier than version 6.2. For a version that works with DISTANCE 6.1, please go to: https://github.com/DistanceDevelopment/dsm-distance-6.1 For the latest version of dsm, please use the github version at the URL listed below. Miller, D. L., M. L. Burt, E. Rexstad and L. Thomas. 2013. Spatial models for distance sampling data: recent developments and future directions. Methods in Ecology and Evolution Hedley, S.L., S.T. Buckland and D.L. Borchers. 2004. "Spatial distance sampling methods" pp 48-70 in Advanced Distance Sampling, Buckland, S.T. et al. (eds). Oxford University Press.
Author: David L. Miller, Eric Rexstad, Louise Burt, Mark V. Bravington, Sharon Hedley.
Maintainer: David Lawrence Miller

Diff between dsm versions 2.2.4 dated 2014-06-17 and 2.2.5 dated 2014-09-15

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 10 files changed, 77 insertions(+), 37 deletions(-)

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Package Distance updated to version 0.9.2 with previous version 0.9.1 dated 2014-06-10

Title: A simple way to fit detection functions to distance sampling data and calculate abundance/density for biological populations.
Description: A library that provides a simple way of fitting detection functions to distance sampling data for both line and point transects. Adjustment term selection, left and right truncation as well as monotonicity constraints and binning are supported. Abundance and density estimates can also be calculated if survey area information is provided.
Author: David Lawrence Miller
Maintainer: David Lawrence Miller

Diff between Distance versions 0.9.1 dated 2014-06-10 and 0.9.2 dated 2014-09-15

 DESCRIPTION              |   10 +++++-----
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More information about Distance at CRAN
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Package berryFunctions updated to version 1.5.2 with previous version 1.5.1 dated 2014-09-04

Title: function collection related to hydrology, zooming and shapefiles
Description: collection of functions to: zoom in X11 graphics and ESRI shapefile plots, use the unit hydrograph in a linear storage cascade, compare several extreme-value-distributions at return periods, draw horizontal histograms and scatterplots colored by 3rd dimension, convert lists to data.frames, fit multiple functions (power, reciprocal, exponential, logarithmic, polynomial, rational) by regression.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool

Diff between berryFunctions versions 1.5.1 dated 2014-09-04 and 1.5.2 dated 2014-09-15

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 R/extremeStatLmom.r     |    2 +
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More information about berryFunctions at CRAN
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Package qpcR updated to version 1.4-0 with previous version 1.3-9 dated 2014-08-11

Title: Modelling and analysis of real-time PCR data
Description: Model fitting, optimal model selection and calculation of various features that are essential in the analysis of quantitative real-time polymerase chain reaction (qPCR).
Author: Andrej-Nikolai Spiess
Maintainer: Andrej-Nikolai Spiess

Diff between qpcR versions 1.3-9 dated 2014-08-11 and 1.4-0 dated 2014-09-15

 qpcR-1.3-9/qpcR/data/qpcR_functions.rda |only
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More information about qpcR at CRAN
Permanent link

Package fmsb updated to version 0.5.1 with previous version 0.5.0 dated 2014-08-04

Title: Functions for medical statistics book with some demographic data
Description: Several utility functions for the book entitled "Practices of Medical and Health Data Analysis using R" (Pearson Education Japan, 2007) with Japanese demographic data and some demographic analysis related functions.
Author: Minato Nakazawa
Maintainer: Minato Nakazawa

Diff between fmsb versions 0.5.0 dated 2014-08-04 and 0.5.1 dated 2014-09-15

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Package PerMallows updated to version 1.7 with previous version 1.3 dated 2014-07-03

Title: Permutations and Mallows distributions
Description: This package includes functions to work with the Mallows, Generalized Mallows and Weighted Mallows Models. The considered distances are Kendall's-tau, Cayley, Hamming and Ulam and it includes functions for making inference, sampling and learning such distributions, some of which are novel in the literature. As a by-product, PerMallows also includes operations for permutations, paying special attention in those related with the Kendall's-tau, Cayley, Ulam and Hamming distances and the random generation of permutations.
Author: Ekhine Irurozki
Maintainer: Ekhine Irurozki

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Package rredis updated to version 1.6.9 with previous version 1.6.8 dated 2013-09-17

Title: Redis client for R
Description: An R client for the Redis persistent key-value database available from http://redis.io.
Author: B. W. Lewis
Maintainer: B. W. Lewis

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Package investr updated to version 1.1.2 with previous version 1.1.1 dated 2014-09-09

Title: Inverse Estimation/Calibration Functions
Description: Functions to facilitate inverse estimation/calibration in linear, nonlinear, and (linear) mixed models. A generic function is also provided for plotting fitted regression models with or without confidence/prediction bands that may be of use to the general user.
Author: Brandon M. Greenwell
Maintainer: Brandon M. Greenwell

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Package genlasso updated to version 1.3 with previous version 1.2 dated 2014-03-02

Title: Path algorithm for generalized lasso problems
Description: This package computes the solution path for generalized lasso problems. Important use cases are the fused lasso over an arbitrary graph, and trend fitting of any given polynomial order. Specialized implementations for the latter two subproblems are given to improve stability and speed.
Author: Taylor B. Arnold and Ryan J. Tibshirani
Maintainer: Taylor Arnold

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Package demography updated to version 1.18 with previous version 1.17 dated 2014-02-01

Title: Forecasting mortality, fertility, migration and population data
Description: Functions for demographic analysis including lifetable calculations; Lee-Carter modelling; functional data analysis of mortality rates, fertility rates, net migration numbers; and stochastic population forecasting.
Author: Rob J Hyndman with contributions from Heather Booth, Leonie Tickle and John Maindonald.
Maintainer: Rob J Hyndman

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Sun, 14 Sep 2014

Package Ryacas updated to version 0.2-12.1 with previous version 0.2-11 dated 2011-09-07

Title: R interface to the yacas computer algebra system
Description: An interface to the yacas computer algebra system.
Author: Rob Goedman , Gabor Grothendieck , Søren Højsgaard , Ayal Pinkus
Maintainer: G. Grothendieck

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Package netweavers updated to version 1.1 with previous version 1.0 dated 2013-06-24

Title: NetWeAvers: Weighted Averages for Networks
Description: This package summarizes quantified peptide data, fits linear models on and performs network analysis for proteomics mass spectrometry data.
Author: Elizabeth McClellan Ribble
Maintainer: Elizabeth Ribble

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Package MissingDataGUI updated to version 0.2-2 with previous version 0.2-0 dated 2014-03-20

Title: A GUI for Missing Data Exploration
Description: Provides numeric and graphical summaries for the missing values from both categorical and quantitative variables. A variety of imputation methods are applied, including the univariate imputations like fixed or random values, multivariate imputations like the nearest neighbors and multiple imputations, and imputations conditioned on a categorical variable.
Author: Xiaoyue Cheng, Dianne Cook, Heike Hofmann
Maintainer: Xiaoyue Cheng

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Package agop updated to version 0.1-4 with previous version 0.1-3 dated 2013-06-27

Title: Aggregation Operators and Preordered Sets
Description: Tools supporting multi-criteria decision making, including variable number of criteria, by means of aggregation operators and preordered sets. Possible applications include, but are not limited to, scientometrics and bibliometrics.
Author: Marek Gagolewski [aut, cre], Anna Cena [ctb]
Maintainer: Marek Gagolewski

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 agop-0.1-4/agop/man/pareto2_estimate_mle.Rd    |   57 ++++----
 agop-0.1-4/agop/man/pareto2_estimate_mmse.Rd   |   33 ++--
 agop-0.1-4/agop/man/pareto2_test_f.Rd          |   97 ++++++-------
 agop-0.1-4/agop/man/plot_producer.Rd           |   85 +++++-------
 agop-0.1-4/agop/man/pord_weakdom.Rd            |   34 ++--
 agop-0.1-4/agop/man/rel_graph.Rd               |   33 ++--
 34 files changed, 774 insertions(+), 817 deletions(-)

More information about agop at CRAN
Permanent link

Package RH2 updated to version 0.2.3 with previous version 0.1-2.12 dated 2014-03-31

Title: DBI/RJDBC interface to h2 Database
Description: DBI/RJDBC interface to h2 database. h2 version 1.3.175 is included.
Author: G. Grothendieck. Author of h2 is Thomas Mueller.
Maintainer: "David M. Kaplan"

Diff between RH2 versions 0.1-2.12 dated 2014-03-31 and 0.2.3 dated 2014-09-14

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 RH2-0.2.3/RH2/NEWS                        |  165 +++++++------
 RH2-0.2.3/RH2/R/class.R                   |  358 +++++++++++++++---------------
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 10 files changed, 293 insertions(+), 263 deletions(-)

More information about RH2 at CRAN
Permanent link

Package RcmdrPlugin.coin updated to version 1.0-22 with previous version 1.0-21 dated 2012-10-30

Title: Rcmdr Coin Plug-In
Description: This package provides a Rcmdr "plug-in" based on coin (Conditional Inference Procedures in a Permutation Test Framework).
Author: Daniel-Corneliu Leucuta
Maintainer: Daniel-Corneliu Leucuta

Diff between RcmdrPlugin.coin versions 1.0-21 dated 2012-10-30 and 1.0-22 dated 2014-09-14

 DESCRIPTION                      |   15 -
 MD5                              |   27 +--
 NAMESPACE                        |    6 
 NEWS                             |only
 R/fncCoinCochraneMHTest.R        |  135 +++++++++++++---
 R/fncCoinFriedmanTest.R          |    6 
 R/fncCoinKruskalWallisTest.R     |    2 
 R/fncCoinMHTest.R                |  320 ++++++++++++++++++++++++---------------
 R/fncCoinSurvivalFunctions.R     |    4 
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 R/startup.R                      |    2 
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 16 files changed, 549 insertions(+), 252 deletions(-)

More information about RcmdrPlugin.coin at CRAN
Permanent link

Package multigroup updated to version 0.4.2 with previous version 0.4.1 dated 2014-09-04

Title: methods for multigroup data analysis
Description: This package includes several methods to study multigroup data, where the same set of variables are measured on different groups of individuals.
Author: Aida Eslami, El Mostafa Qannari, Stephanie Bougeard, Gaston Sanchez Questions and comments go to Aida Eslami and Stephanie Bougeard
Maintainer: Aida Eslami

Diff between multigroup versions 0.4.1 dated 2014-09-04 and 0.4.2 dated 2014-09-14

 DESCRIPTION                |   13 
 MD5                        |   62 +--
 NAMESPACE                  |   69 +--
 R/FCPCA.R                  |    2 
 R/loadingsplotXY.R         |only
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 R/mgPLS.R                  |  820 ++++++++++++++++++++++-----------------------
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 33 files changed, 1757 insertions(+), 1821 deletions(-)

More information about multigroup at CRAN
Permanent link

Package KernSmooth updated to version 2.23-13 with previous version 2.23-12 dated 2014-03-28

Title: Functions for kernel smoothing for Wand & Jones (1995)
Description: functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) "Kernel Smoothing".
Author: Matt Wand [aut], Brian Ripley [trl, cre, ctb] (R port and updates)
Maintainer: Brian Ripley

Diff between KernSmooth versions 2.23-12 dated 2014-03-28 and 2.23-13 dated 2014-09-14

 KernSmooth-2.23-12/KernSmooth/Licence.note |only
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 7 files changed, 23 insertions(+), 15 deletions(-)

More information about KernSmooth at CRAN
Permanent link

Package EDISON updated to version 1.1 with previous version 1.0 dated 2012-07-16

Title: Network Reconstruction and Changepoint Detection
Description: Package EDISON (Estimation of Directed Interactions from Sequences Of Non-homogeneous gene expression) runs an MCMC simulation to reconstruct networks from time series data, using a non-homogeneous, time-varying dynamic Bayesian network. Networks segments and changepoints are inferred concurrently, and information sharing priors provide a reduction of the inference uncertainty.
Author: Frank Dondelinger, Sophie Lebre
Maintainer: Frank Dondelinger

Diff between EDISON versions 1.0 dated 2012-07-16 and 1.1 dated 2014-09-14

 DESCRIPTION                                 |   26 +--
 MD5                                         |  242 ++++++++++++++--------------
 NAMESPACE                                   |   68 +++++++
 R/AcceptableMove.R                          |   75 +++++---
 R/BinoHyperMove.R                           |   29 +++
 R/BinoHyperRatio.R                          |   28 +++
 R/CalculateChanges.R                        |   19 ++
 R/CalculateLikelihoodRatio.R                |   25 ++
 R/CalculatePriorRatio.R                     |   30 +++
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 R/EDISON-package.R                          |only
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 R/ExpHyperMove.R                            |   32 +++
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 R/HyperParms.R                              |   21 ++
 R/HyperparameterMove.R                      |   33 +++
 R/NetworkProbBino.R                         |   25 ++
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 R/computePx.R                               |   19 ++
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 R/fix_eigenvalues.R                         |   17 +
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 R/init.R                                    |   28 ++-
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 R/psrf.R                                    |   45 +++++
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 R/sampleBinit.R                             |   18 ++
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 man/CalculatePriorRatio.Rd                  |   99 +++++------
 man/CollectNetworkInfo.Rd                   |  101 +++++------
 man/EDISON-package.Rd                       |  100 +++++------
 man/EDISON.run.Rd                           |  155 +++++++++--------
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 man/ExpHyperRatioTarget.Rd                  |   96 +++++------
 man/HyperParms.Rd                           |   70 +++-----
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 man/NetworkProbBino.Rd                      |   86 ++++-----
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 man/buildXY.Rd                              |   54 +++---
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 man/calculateEdgeProbabilities.Rd           |  100 +++++------
 man/calculateEdgeProbabilitiesSegs.Rd       |   73 ++++----
 man/calculateEdgeProbabilitiesTimePoints.Rd |   73 +++-----
 man/computePx.Rd                            |   78 ++++-----
 man/computeRho4.Rd                          |   86 ++++-----
 man/convert_nets.Rd                         |   61 +++----
 man/cp.birth.Rd                             |  140 +++++++---------
 man/cp.death.Rd                             |  142 +++++++---------
 man/cp.shift.Rd                             |  134 ++++++---------
 man/defaultOptions.Rd                       |  104 +++++-------
 man/dinvgamma.Rd                            |   77 +++-----
 man/fix_eigenvalues.Rd                      |   68 +++----
 man/generateNetwork.Rd                      |  160 ++++++++----------
 man/init.Rd                                 |   90 ++++------
 man/main.Rd                                 |   89 +++++-----
 man/make_structure_move.Rd                  |  126 +++++++-------
 man/output.Rd                               |   77 ++++----
 man/phase.update.Rd                         |  137 +++++++--------
 man/proposalTuning.Rd                       |   54 ++----
 man/proposeContinuous.Rd                    |   76 ++++----
 man/psrf.Rd                                 |  118 ++++++-------
 man/psrf_check.Rd                           |   75 +++-----
 man/psrf_check_hyper.Rd                     |   66 +++----
 man/readDataTS.Rd                           |   78 +++------
 man/rinvgamma.Rd                            |   79 ++++-----
 man/runDBN.Rd                               |  164 +++++++++---------
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 man/sampleParms.Rd                          |  103 +++++------
 man/sampleSig2.Rd                           |   77 +++-----
 man/simulateNetwork.Rd                      |  209 +++++++++++-------------
 man/updateSigMulti.Rd                       |  126 ++++++--------
 man/updateSigSolo.Rd                        |  120 +++++--------
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More information about EDISON at CRAN
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Package RPMM updated to version 1.20 with previous version 1.10 dated 2012-03-16

Title: Recursively Partitioned Mixture Model
Description: Recursively Partitioned Mixture Model for Beta and Gaussian Mixtures. This is a model-based clustering algorithm that returns a hierarchy of classes, similar to hierarchical clustering, but also similar to finite mixture models.
Author: E. Andres Houseman, Sc.D. and Devin C. Koestler, Ph.D.
Maintainer: E. Andres Houseman

Diff between RPMM versions 1.10 dated 2012-03-16 and 1.20 dated 2014-09-14

 DESCRIPTION    |   20 ++++---
 MD5            |    8 +--
 R/betaRPMM.R   |  137 ++++++++++++++++++++++++++----------------------------
 R/gaussRPMM.R  |  144 +++++++++++++++++++++++++++------------------------------
 man/glcTree.Rd |    5 +
 5 files changed, 155 insertions(+), 159 deletions(-)

More information about RPMM at CRAN
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Package geoR updated to version 1.7-4.1 with previous version 1.7-4 dated 2012-07-05

Title: Analysis of geostatistical data
Description: Geostatistical analysis including traditional, likelihood-based and Bayesian methods.
Author: Paulo J. Ribeiro Jr and Peter J. Diggle
Maintainer: Paulo J. Ribeiro Jr

Diff between geoR versions 1.7-4 dated 2012-07-05 and 1.7-4.1 dated 2014-09-14

 DESCRIPTION     |    7 ++++---
 MD5             |    6 +++---
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 R/geoRdefunct.R |   10 ++++------
 4 files changed, 18 insertions(+), 23 deletions(-)

More information about geoR at CRAN
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Sat, 13 Sep 2014

Package iBATCGH updated to version 1.1 with previous version 1.0 dated 2014-09-02

Title: Integrative Bayesian Analysis of Transcriptomic and CGH data
Description: Bayesian integrative models of gene expression and comparative genomic hybridization data. The package provides inference on copy number variations and their association with gene expression
Author: Alberto Cassese
Maintainer: Alberto Cassese

Diff between iBATCGH versions 1.0 dated 2014-09-02 and 1.1 dated 2014-09-13

 DESCRIPTION                |    6 +++---
 MD5                        |   16 ++++++++--------
 inst/include/MHXIProbit.h  |    2 +-
 inst/include/MHXImixture.h |    2 +-
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 9 files changed, 18 insertions(+), 18 deletions(-)

More information about iBATCGH at CRAN
Permanent link

Package Lahman updated to version 3.0-1 with previous version 2.0-3 dated 2013-06-01

Title: Sean Lahman's Baseball Database
Description: This package provides the tables from Sean Lahman's Baseball Database as a set of R data.frames. It uses the data on pitching, hitting and fielding performance and other tables from 1871 through 2013, as recorded in the 2014 version of the database.
Author: Michael Friendly [aut, cre], Dennis Murphy [ctb], Martin Monkman [ctb], Chris Dalzell [ctb]
Maintainer: Michael Friendly

Diff between Lahman versions 2.0-3 dated 2013-06-01 and 3.0-1 dated 2014-09-13

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More information about Lahman at CRAN
Permanent link

Package seedy updated to version 0.2 with previous version 0.1 dated 2014-07-10

Title: Simulation of Evolutionary and Epidemiological Dynamics
Description: Suite of functions for the simulation and visualisation of bacterial evolution within- and between-host.
Author: Colin Worby
Maintainer: Colin Worby

Diff between seedy versions 0.1 dated 2014-07-10 and 0.2 dated 2014-09-13

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More information about seedy at CRAN
Permanent link

Package referenceIntervals updated to version 1.1.1 with previous version 1.1 dated 2014-08-09

Title: Reference Intervals
Description: This is a collection of tools to allow the medical professional to calculate appropriate reference ranges (intervals) with confidence intervals around the limits for diagnostic purposes.
Author: Daniel Finnegan
Maintainer: Daniel Finnegan

Diff between referenceIntervals versions 1.1 dated 2014-08-09 and 1.1.1 dated 2014-09-13

 referenceIntervals-1.1.1/referenceIntervals/DESCRIPTION                       |   10 ++--
 referenceIntervals-1.1.1/referenceIntervals/MD5                               |   13 ++----
 referenceIntervals-1.1.1/referenceIntervals/NAMESPACE                         |   21 +++++++++-
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More information about referenceIntervals at CRAN
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Package phyloland updated to version 1.3 with previous version 1.2 dated 2014-09-12

Title: Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework
Description: Phyloland package models a space colonization process mapped onto a phylogeny, it aims at estimating limited dispersal and ecological competitive exclusion in a Bayesian MCMC statistical phylogeographic framework (please refer to phyloland-package help for details.)
Author: Louis Ranjard, Marie Paturel
Maintainer: Louis Ranjard

Diff between phyloland versions 1.2 dated 2014-09-12 and 1.3 dated 2014-09-13

 DESCRIPTION |    6 +++---
 MD5         |    4 ++--
 src/main.c  |   14 +++++++++++---
 3 files changed, 16 insertions(+), 8 deletions(-)

More information about phyloland at CRAN
Permanent link

Package ONETr updated to version 1.0 with previous version 0.1-1 dated 2014-07-07

Title: Efficient authenticated interaction with the O*NET API.
Description: This package provides a series of functions designed to enable users to easily search and interact with occupational data from the O*NET API . The package produces parsed and listed XML data for custom interactions, or pre-packaged functions for easy extraction of specific data (e.g., Knowledge, Skills, Abilities, Work Styles, etc.).
Author: Eric Knudsen
Maintainer: Eric Knudsen

Diff between ONETr versions 0.1-1 dated 2014-07-07 and 1.0 dated 2014-09-13

 DESCRIPTION               |    8 ++++----
 MD5                       |   44 ++++++++++++++++++++++----------------------
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More information about ONETr at CRAN
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Package HH updated to version 3.1-5 with previous version 3.0-4 dated 2014-03-11

Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN x-xxx-xxxxx-x, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.
Author: Richard M. Heiberger
Maintainer: Richard M. Heiberger

Diff between HH versions 3.0-4 dated 2014-03-11 and 3.1-5 dated 2014-09-13

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Package geepack updated to version 1.2-0 with previous version 1.1-6 dated 2012-01-27

Title: Generalized Estimating Equation Package
Description: Generalized estimating equations solver for parameters in mean, scale, and correlation structures, through mean link, scale link, and correlation link. Can also handle clustered categorical responses.
Author: Søren Højsgaard, , Ulrich Halekoh , Jun Yan ,
Maintainer: Søren Højsgaard

Diff between geepack versions 1.1-6 dated 2012-01-27 and 1.2-0 dated 2014-09-13

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Fri, 12 Sep 2014

Package CorReg updated to version 0.15.6 with previous version 0.15.0 dated 2014-07-15

Title: Linear regression based on linear structure between covariates
Description: Linear regression based on a recursive structural equation model (explicit correlations) found by a MCMC algorithm. It permits to face highly correlated covariates. Variable selection is included (by lasso, elasticnet, etc.). It also provides some graphical tools for basic statistics.
Author: Clement THERY [aut, cre], Christophe BIERNACKI [ctb], Gaetan LORIDANT [ctb], Florian WATRIN [ctb], Quentin GRIMONPREZ [ctb], Vincent KUBICKI [ctb], Samuel BLANCK [ctb], Jeremie KELLNER [ctb]
Maintainer: Clement THERY

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Package partykit updated to version 0.8-2 with previous version 0.8-1 dated 2014-09-08

Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and visualizing tree-structured regression and classification models. This unified infrastructure can be used for reading/coercing tree models from different sources (rpart, RWeka, PMML) yielding objects that share functionality for print/plot/predict methods. Furthermore, new and improved reimplementations of conditional inference trees (ctree) and model-based recursive partitioning (mob) from the party package are provided based on the new infrastructure.
Author: Torsten Hothorn [aut, cre], Achim Zeileis [aut]
Maintainer: Torsten Hothorn

Diff between partykit versions 0.8-1 dated 2014-09-08 and 0.8-2 dated 2014-09-12

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Package leafletR updated to version 0.3-0 with previous version 0.2-1 dated 2014-07-09

Title: Interactive web-maps based on the Leaflet JavaScript library
Description: Display your spatial data on interactive web-maps using the open-source JavaScript library Leaflet. The package provides basic web-mapping functionality to combine vector data and online map tiles from different sources.
Author: Christian Graul, with contributions from Francois Guillem
Maintainer: Christian Graul

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Package WhopGenome updated to version 0.9.0 with previous version 0.8.9 dated 2014-08-27

Title: High-speed processing of whole-genome VCF-format variation data, FASTA-format sequence data and several alignments formats.
Description: WhopGenome's provides very fast access to whole genome, population scale variation data from VCF files and sequence data from FASTA-formatted files. It also reads in alignments from FASTA, Phylip, MAF and other file formats. Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
Author: Ulrich Wittelsbuerger
Maintainer: Ulrich Wittelsbuerger

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Package SpecsVerification updated to version 0.2-0 with previous version 0.1-1 dated 2014-05-02

Title: Forecast verification routines for the SPECS FP7 project
Description: A collection of new forecast verification routines for the SPECS FP7 project. The emphasis is on comparative verification of ensemble forecasts.
Author: Stefan Siegert [aut, cre]
Maintainer: Stefan Siegert

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Package seewave updated to version 1.7.6 with previous version 1.7.3 dated 2014-01-27

Title: Sound analysis and synthesis
Description: seewave provides functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses.
Author: Jerome Sueur , Thierry Aubin, Caroline Simonis, \cr with contributions of Ethan C. Brown, Camille Desjonqueres, Amandine Gasc, Stefanie LaZerte, Jonathan Lees, Laurent Lellouch, Sandrine Pavoine, Luis J. Villanueva-Rivera, Zev Ross, Carl G. Witthoft.
Maintainer: Jerome Sueur

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Package RhpcBLASctl updated to version 0.14-256 with previous version 0.14-72 dated 2014-03-13

Title: Control the number of threads on BLAS for R
Description: Control the number of threads on BLAS(Aka GotoBLAS, ACML and MKL). -- GotoBLAS(generic) binary for Windows i386 http://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/binary/windows/x86/KATMAI/Rblas.dll GotoBLAS(generic) binary for Windows x64 http://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/binary/windows/x64/PRESCOTT/Rblas.dll
Author: Junji NAKANO and Eiji NAKAMA
Maintainer: Ei-ji Nakama

Diff between RhpcBLASctl versions 0.14-72 dated 2014-03-13 and 0.14-256 dated 2014-09-12

 ChangeLog   |    4 ++++
 DESCRIPTION |   10 +++++-----
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More information about RhpcBLASctl at CRAN
Permanent link

Package Rhpc updated to version 0.14-256 with previous version 0.14-78 dated 2014-03-22

Title: An R package for High-Performance Computing
Description: Rhpc_lapply, Rhpc_lapplyLB and Rhpc_worker_call using MPI provides better HPC environment on R(works fast on HPC). and this package supports long vector, can deal with slightly big data.
Author: Junji NAKANO and Eiji NAKAMA
Maintainer: Ei-ji Nakama

Diff between Rhpc versions 0.14-78 dated 2014-03-22 and 0.14-256 dated 2014-09-12

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More information about Rhpc at CRAN
Permanent link

Package PReMiuM updated to version 3.0.30 with previous version 3.0.29 dated 2014-09-09

Title: Dirichlet Process Bayesian Clustering, Profile Regression
Description: This is a package for Bayesian clustering using a Dirichlet process mixture model. This model is an alternative to regression models, non-parametrically linking a response vector to covariate data through cluster membership. The package allows Bernoulli, Binomial, Poisson, Normal, survival and categorical response, as well as Normal and discrete covariates. It also allows for fixed effects in the response model, where a spatial CAR (conditional autoregressive) term can be also included. Additionally, predictions may be made for the response, and missing values for the covariates are handled. Several samplers and label switching moves are implemented along with diagnostic tools to assess convergence. A number of R functions for post-processing of the output are also provided. In addition to fitting mixtures, it may additionally be of interest to determine which covariates actively drive the mixture components. This is implemented in the package as variable selection.
Author: David I. Hastie , Silvia Liverani , Aurore J. Lavigne, Lucy Leigh, Lamiae Azizi, Sylvia Richardson
Maintainer: Silvia Liverani

Diff between PReMiuM versions 3.0.29 dated 2014-09-09 and 3.0.30 dated 2014-09-12

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Package meta updated to version 3.8-0 with previous version 3.7-1 dated 2014-07-29

Title: Meta-Analysis with R
Description: User-friendly general package providing standard methods for meta-analysis: - fixed effect and random effects meta-analysis; - several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble); - statistical tests and trim-and-fill method to evaluate bias in meta-analysis; - import data from RevMan 5; - prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model; - cumulative meta-analysis and leave-one-out meta-analysis; - meta-regression (if R package metafor is installed).
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer

Diff between meta versions 3.7-1 dated 2014-07-29 and 3.8-0 dated 2014-09-12

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Permanent link

Package Hmisc updated to version 3.14-5 with previous version 3.14-4 dated 2014-04-13

Title: Harrell Miscellaneous
Description: The Hmisc package contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, importing datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of R objects to LaTeX code, and recoding variables.
Author: Frank E Harrell Jr , with contributions from Charles Dupont and many others.
Maintainer: Frank E Harrell Jr

Diff between Hmisc versions 3.14-4 dated 2014-04-13 and 3.14-5 dated 2014-09-12

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Permanent link

Package xtable updated to version 1.7-4 with previous version 1.7-3 dated 2014-03-06

Title: Export tables to LaTeX or HTML
Description: Coerce data to LaTeX and HTML tables
Author: David B. Dahl
Maintainer: David Scott

Diff between xtable versions 1.7-3 dated 2014-03-06 and 1.7-4 dated 2014-09-12

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Package unittest updated to version 1.0-1 with previous version 1.0-0 dated 2014-08-23

Title: TAP-compliant unit testing.
Description: Concise TAP (http://testanything.org/) compliant unit testing package. Authored tests that can be run using CMD check with minimal implementation overhead.
Author: Jamie Lentin [aut], Anthony Hennessey [aut, cre]
Maintainer: Anthony Hennessey

Diff between unittest versions 1.0-0 dated 2014-08-23 and 1.0-1 dated 2014-09-12

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Package spatsurv updated to version 0.9-7 with previous version 0.9-6 dated 2014-07-15

Title: Bayesian spatial survival analysis with parametric proportional hazards models.
Description: an R Package for Bayesian Inference with Spatial Survival Models
Author: Benjamin M. Taylor and Barry S. Rowlingson
Maintainer: Benjamin M. Taylor

Diff between spatsurv versions 0.9-6 dated 2014-07-15 and 0.9-7 dated 2014-09-12

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Permanent link

Package SimComp updated to version 2.2 with previous version 1.9.0 dated 2014-02-28

Title: Simultaneous Comparisons for Multiple Endpoints
Description: Simultaneous tests and confidence intervals are provided for one-way experimental designs with one or many normally distributed, primary response variables (endpoints). Differences (Hasler and Hothorn, 2011) or ratios (Hasler and Hothorn, 2012) of means can be considered. Various contrasts can be chosen, unbalanced sample sizes are allowed as well as heterogeneous variances (Hasler and Hothorn, 2008) or covariance matrices (Hasler, 2014).
Author: Mario Hasler
Maintainer: Mario Hasler

Diff between SimComp versions 1.9.0 dated 2014-02-28 and 2.2 dated 2014-09-12

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Package phyloland updated to version 1.2 with previous version 1.1 dated 2014-08-16

Title: Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework
Description: Phyloland package models a space colonization process mapped onto a phylogeny, it aims at estimating limited dispersal and ecological competitive exclusion in a Bayesian MCMC statistical phylogeographic framework (please refer to phyloland-package help for details.)
Author: Louis Ranjard, Marie Paturel
Maintainer: Louis Ranjard

Diff between phyloland versions 1.1 dated 2014-08-16 and 1.2 dated 2014-09-12

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Package PepPrep updated to version 1.1.0 with previous version 1.0.1 dated 2014-09-04

Title: Insilico peptide mutation, digestion and homologous comparison.
Description: Amino acid exchange based on single nucleotide variant (SNV) information and tryptic digestion on peptide sequence. Searching for homologous by comparison of tryptic digested peptide sequences.
Author: Rafael Dellen
Maintainer: Rafael Dellen

Diff between PepPrep versions 1.0.1 dated 2014-09-04 and 1.1.0 dated 2014-09-12

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Package zCompositions updated to version 1.0.3 with previous version 1.0.2 dated 2014-09-09

Title: Imputation of Zeros and Nondetects in Compositional Data Sets
Description: Principled methods to impute multivariate left-censored data and zeros in compositional data sets
Author: Javier Palarea-Albaladejo and Josep Antoni Martin-Fernandez
Maintainer: Javier Palarea-Albaladejo

Diff between zCompositions versions 1.0.2 dated 2014-09-09 and 1.0.3 dated 2014-09-12

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Package RGraphics updated to version 2.0-12 with previous version 2.0-9 dated 2014-06-10

Title: Data and Functions from the book R Graphics, Second Edition
Description: Data and Functions from the book R Graphics, Second Edition. There is a function to produce each figure in the book, plus several functions, classes, and methods defined in Chapter 8.
Author: Paul Murrell
Maintainer: Paul Murrell

Diff between RGraphics versions 2.0-9 dated 2014-06-10 and 2.0-12 dated 2014-09-12

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Thu, 11 Sep 2014

Package VennDiagram updated to version 1.6.8 with previous version 1.6.7 dated 2014-07-03

Title: Generate high-resolution Venn and Euler plots
Description: A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Author: Hanbo Chen
Maintainer: Paul Boutros

Diff between VennDiagram versions 1.6.7 dated 2014-07-03 and 1.6.8 dated 2014-09-11

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Package intsvy updated to version 1.4 with previous version 1.3 dated 2014-03-13

Title: International Assessment Data Manager
Description: Provides tools for importing, merging, and analysing data from international assessment studies (TIMSS, PIRLS, PISA and PIAAC)
Author: Daniel Caro , Przemyslaw Biecek
Maintainer: Daniel Caro

Diff between intsvy versions 1.3 dated 2014-03-13 and 1.4 dated 2014-09-11

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 intsvy-1.4/intsvy/R/timssg4.select.merge.R    |  500 +++++++++++++-------------
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 intsvy-1.4/intsvy/R/timssg8.select.merge.R    |  398 ++++++++++----------
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 93 files changed, 3946 insertions(+), 3829 deletions(-)

More information about intsvy at CRAN
Permanent link

Package snpEnrichment updated to version 1.4-1 with previous version 1.4-0 dated 2014-02-04

Title: SNPs enrichment analysis
Description: Implements classes and methods for large scale SNP enrichment analysis (e.g. SNPs associated with genes expression in a GWAS signal)
Author: Mickael Canouil [aut, cre], Loic Yengo [ctb]
Maintainer: Mickael Canouil

Diff between snpEnrichment versions 1.4-0 dated 2014-02-04 and 1.4-1 dated 2014-09-11

 ChangeLog                    |   21 ++++++++-----
 DESCRIPTION                  |    8 ++---
 MD5                          |   38 ++++++++++++------------
 NAMESPACE                    |    4 +-
 R/Global.R                   |   52 ++++++++++++++-------------------
 R/enrichment.R               |   66 +++++++++++++++++++++++++++++++------------
 data/toyEnrichment.RData     |binary
 man/Chromosome-class.Rd      |   28 +++++++++---------
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 man/writeLD.Rd               |   16 +++++-----
 20 files changed, 216 insertions(+), 189 deletions(-)

More information about snpEnrichment at CRAN
Permanent link

Package knnIndep updated to version 2.0 with previous version 1.0 dated 2014-03-18

Title: Independence tests and benchmarks
Description: This package provides the implementation of an exact formula of the ith nearest neighbour distance distribution and implementations of tests of independence based on that formula. Furthermore the package provides a general framework to benchmark tests of independence.
Author: Sebastian Dümcke
Maintainer: Sebastian Dümcke

Diff between knnIndep versions 1.0 dated 2014-03-18 and 2.0 dated 2014-09-11

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 MD5                       |   29 ++++++++++++++++++++---------
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More information about knnIndep at CRAN
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Package glmmLasso updated to version 1.3.3 with previous version 1.3.2 dated 2014-09-10

Title: Variable selection for generalized linear mixed models by L1-penalized estimation
Description: Variable selection for generalized linear mixed models by L1-penalized estimation
Author: Andreas Groll
Maintainer: Andreas Groll

Diff between glmmLasso versions 1.3.2 dated 2014-09-10 and 1.3.3 dated 2014-09-11

 DESCRIPTION                        |    8 ++++----
 MD5                                |   14 +++++++-------
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 R/glmm_final.r                     |    6 ++++--
 R/glmm_final.smooth.r              |    6 ++++--
 R/glmm_final_multi_random.r        |    6 ++++--
 R/glmm_final_multi_random_smooth.r |    6 ++++--
 man/glmmLasso.rd                   |   13 +++++++------
 8 files changed, 44 insertions(+), 30 deletions(-)

More information about glmmLasso at CRAN
Permanent link

Package pkgKitten updated to version 0.1.2 with previous version 0.1.1 dated 2014-09-10

Title: Create Simple Packages Which Do Not Upset R CMD check
Description: Provides a function kitten() which creates cute little packages which pass R CMD check. This sets it apart from package.skeleton() which it calls, and which leaves imperfect files behind. As this is not exactly helpful for beginners, kitten() offers an alternative.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel

Diff between pkgKitten versions 0.1.1 dated 2014-09-10 and 0.1.2 dated 2014-09-11

 ChangeLog     |    6 ++++++
 DESCRIPTION   |    8 ++++----
 MD5           |    8 ++++----
 R/pkgKitten.R |    2 +-
 inst/NEWS.Rd  |    7 +++++++
 5 files changed, 22 insertions(+), 9 deletions(-)

More information about pkgKitten at CRAN
Permanent link

Package pbkrtest updated to version 0.4-1 with previous version 0.4-0 dated 2014-08-11

Title: Parametric bootstrap and Kenward Roger based methods for mixed model comparison
Description: Test in linear mixed effects models. Attention is on linear mixed effects models as implemented in the lme4 package. The package implements a parametric bootstrap test The package implements a Kenward-Roger modification of F-tests
Author: Ulrich Halekoh Søren Højsgaard
Maintainer: Søren Højsgaard

Diff between pbkrtest versions 0.4-0 dated 2014-08-11 and 0.4-1 dated 2014-09-11

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 22 files changed, 635 insertions(+), 583 deletions(-)

More information about pbkrtest at CRAN
Permanent link

Package rsubgroup updated to version 0.6 with previous version 0.5 dated 2014-08-06

Title: Subgroup Discovery and Analytics
Description: A collection of efficient and effective tools and algorithms for subgroup discovery and analytics. The package integrates an R interface to the org.vikamine.kernel library of the VIKAMINE system (http://www.vikamine.org) implementing subgroup discovery, pattern mining and analytics in Java.
Author: Martin Atzmueller
Maintainer: Martin Atzmueller

Diff between rsubgroup versions 0.5 dated 2014-08-06 and 0.6 dated 2014-09-11

 DESCRIPTION                    |   12 ++++++------
 MD5                            |   25 +++++++++++++------------
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 14 files changed, 58 insertions(+), 39 deletions(-)

More information about rsubgroup at CRAN
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Package RankResponse updated to version 3.1.1 with previous version 3.0.3 dated 2014-04-03

Title: Ranking Responses in a Single Response Question or a Multiple Response Question
Description: Methods for ranking responses of a single response question or a multiple response question
Author: Hsiuying Wang, Yu-Chun Lin
Maintainer: Hsiuying Wang

Diff between RankResponse versions 3.0.3 dated 2014-04-03 and 3.1.1 dated 2014-09-11

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 RankResponse-3.1.1/RankResponse/R/rank.L2R.R     |   35 +--------
 RankResponse-3.1.1/RankResponse/R/rank.LN.R      |   54 ++------------
 RankResponse-3.1.1/RankResponse/R/rank.btmm.R    |    4 -
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 18 files changed, 125 insertions(+), 203 deletions(-)

More information about RankResponse at CRAN
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Package rplexos updated to version 0.9.1 with previous version 0.9 dated 2014-08-26

Title: Read and analyze PLEXOS solutions from R
Description: Read and analyze PLEXOS solutions from R
Author: Eduardo Ibanez
Maintainer: Eduardo Ibanez

Diff between rplexos versions 0.9 dated 2014-08-26 and 0.9.1 dated 2014-09-11

 DESCRIPTION           |    8 +--
 MD5                   |   35 +++++++-------
 NAMESPACE             |    3 -
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 R/globalVariables.R   |    2 
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 19 files changed, 261 insertions(+), 164 deletions(-)

More information about rplexos at CRAN
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Package lmms updated to version 1.1 with previous version 1.0 dated 2014-06-06

Title: Linear mixed effect model splines for modelling and analysis of time course data
Description: The package implements linear mixed effect model splines for modelling and differential expression for highly dimensional data sets: investNoise for quality control and filterNoise for removing non-informative trajectories; lmmSpline to model time course expression profiles and lmmsDE performs differential expression analysis to identify differential expression between groups, time and/or time x group interaction.
Author: Jasmin Straube, Kim-Anh Le Cao and Emma Huang with contributions of Dominique Gorse
Maintainer: Jasmin Straube

Diff between lmms versions 1.0 dated 2014-06-06 and 1.1 dated 2014-09-11

 DESCRIPTION                   |   16 +++++++++-------
 MD5                           |   39 ++++++++++++++++++++++++---------------
 NAMESPACE                     |    9 +++++++++
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 R/lmmsDE-method.R             |    4 ++--
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Package DatABEL updated to version 0.9-5 with previous version 0.9-4.1 dated 2014-07-27

Title: file-based access to large matrices stored on HDD in binary format
Description: a package providing an interface to the C++ FILEVECTOR library facilitating analysis of large (giga- to tera-bytes) matrices; matrix storage is organized in a way that either columns or rows are quickly accessible; primarily aimed to support genome-wide association analyses e.g. using GenABEL, MixABEL and ProbABEL
Author: Yurii Aulchenko, Stepan Yakovenko, Erik Roos, Marcel Kempenaar, Maksim Struchalin
Maintainer: Yurii Aulchenko

Diff between DatABEL versions 0.9-4.1 dated 2014-07-27 and 0.9-5 dated 2014-09-11

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Wed, 10 Sep 2014

Package RcmdrPlugin.IPSUR updated to version 0.2-1 with previous version 0.2-0 dated 2014-08-29

Title: An IPSUR Plugin for the R Commander
Description: This package is an R Commander plugin that accompanies IPSUR, an Introduction to Probability and Statistics Using R.
Author: G. Jay Kerns [aut, cre], Theophilus Boye [ctb], Tyler Drombosky [ctb]
Maintainer: G. Jay Kerns

Diff between RcmdrPlugin.IPSUR versions 0.2-0 dated 2014-08-29 and 0.2-1 dated 2014-09-10

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Package glmmLasso updated to version 1.3.2 with previous version 1.3.1 dated 2014-07-10

Title: Variable selection for generalized linear mixed models by L1-penalized estimation
Description: Variable selection for generalized linear mixed models by L1-penalized estimation
Author: Andreas Groll
Maintainer: Andreas Groll

Diff between glmmLasso versions 1.3.1 dated 2014-07-10 and 1.3.2 dated 2014-09-10

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More information about glmmLasso at CRAN
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Package cgam updated to version 1.2 with previous version 1.1 dated 2014-04-16

Title: Constrained Generalized Additive Model
Description: In this package, a constrained generalized additive model is fitted by the cgam routine. Given a set of predictors with or without shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The cone information criterion (CIC) may be used to select the best combination of variables and shapes. This package depends on the R package coneproj.
Author: Mary C. Meyer and Xiyue Liao
Maintainer: Xiyue Liao

Diff between cgam versions 1.1 dated 2014-04-16 and 1.2 dated 2014-09-10

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Package segmented updated to version 0.5-0.0 with previous version 0.4-0.0 dated 2014-07-11

Title: Segmented relationships in regression models with breakpoints/changepoints estimation
Description: Given a regression model, segmented `updates' the model by adding one or more segmented relationships. Several variables with multiple breakpoints are allowed.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo

Diff between segmented versions 0.4-0.0 dated 2014-07-11 and 0.5-0.0 dated 2014-09-10

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Package GGMselect updated to version 0.1-9 with previous version 0.1-8 dated 2013-12-12

Title: Gaussian Graphs Models selection
Description: GGMselect is a package dedicated to graph estimation in Gaussian Graphical Models. The main functions return the adjacency matrix of an undirected graph estimated from a data matrix.
Author: Annie Bouvier, Christophe Giraud, Sylvie Huet, Verzelen N.
Maintainer: Annie Bouvier

Diff between GGMselect versions 0.1-8 dated 2013-12-12 and 0.1-9 dated 2014-09-10

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Package caTools updated to version 1.17.1 with previous version 1.17 dated 2014-04-21

Title: Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
Description: Contains several basic utility functions including: moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off-error-free sum and cumsum, etc.
Author: Jarek Tuszynski
Maintainer: Harutyun Khachatryan

Diff between caTools versions 1.17 dated 2014-04-21 and 1.17.1 dated 2014-09-10

 DESCRIPTION  |   10 ++---
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Package pkgKitten updated to version 0.1.1 with previous version 0.1.0 dated 2014-06-13

Title: Create Simple Packages Which Do Not Upset R CMD check
Description: Provides a function kitten() which create cute little packages which pass R CMD check. This sets it apart from package.skeleton() which it calls, and which leaves imperfect files behind. As this is not exactly helpful for beginners, kitten() offers an alternative.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel

Diff between pkgKitten versions 0.1.0 dated 2014-06-13 and 0.1.1 dated 2014-09-10

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Package sjPlot updated to version 1.5 with previous version 1.4.3 dated 2014-08-14

Title: sjPlot - data visualization for statistics in social science
Description: Collection of several plotting / table output functions for visualizing data and utility functions.
Author: Daniel Lüdecke
Maintainer: Daniel Luedecke

Diff between sjPlot versions 1.4.3 dated 2014-08-14 and 1.5 dated 2014-09-10

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Package catR updated to version 3.2 with previous version 3.1 dated 2014-06-04

Title: Procedures to generate IRT adaptive tests (CAT)
Description: The catR package allows the generation of response patterns under computerized adaptive testing (CAT) framework, with the choice of several starting rules, next item selection routines, stopping rules and ability estimators. Control methods for item exposure and content balancing are also included.
Author: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada), Juan Ramon Barrada (U Zaragoza, Spain)
Maintainer: David Magis

Diff between catR versions 3.1 dated 2014-06-04 and 3.2 dated 2014-09-10

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Package synbreed updated to version 0.10-2 with previous version 0.10-1 dated 2014-09-02

Title: Framework for the analysis of genomic prediction data using R
Description: The package was developed within the Synbreed project for synergistic plant and animal breeding (www.synbreed.tum.de). It contains a collection of functions required for genomic prediction in both plant and animal breeding. This covers data processing, data visualization and analysis. All functions are embedded within the framework of a single, unified data object. The implementation is flexible with respect to a wide range of data formats. This research was funded by the German Federal Ministry of Education and Research (BMBF) within the AgroClustEr Synbreed - Synergistic plant and animal breeding (FKZ 0315528A).
Author: Valentin Wimmer, Hans-Juergen Auinger, Theresa Albrecht, Chris-Carolin Schoen with contributions by Larry Schaeffer, Malena Erbe, Ulrike Ober, Christian Reimer, Yvonne Badke and Peter VandeHaar
Maintainer: Valentin Wimmer

Diff between synbreed versions 0.10-1 dated 2014-09-02 and 0.10-2 dated 2014-09-10

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Package dismo updated to version 1.0-5 with previous version 0.9-3 dated 2013-12-15

Title: Species distribution modeling
Description: Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites.
Author: Robert J. Hijmans, Steven Phillips, John Leathwick and Jane Elith
Maintainer: Robert J. Hijmans

Diff between dismo versions 0.9-3 dated 2013-12-15 and 1.0-5 dated 2014-09-10

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Package Sim.DiffProc updated to version 2.9 with previous version 2.8 dated 2014-08-19

Title: Simulation of Diffusion Processes
Description: The package Sim.DiffProc is an object created in R environment for simulation and modeling of stochastic differential equations (SDE's) the type Ito and Stratonovich. This package contains many objects, the numerical methods to find the solutions to SDE's (1, 2 and 3-dim), with a possibility for simulates a flows trajectories,with good accuracy. Many theoretical problems on the SDE's have become the object of practical research, as statistical analysis and simulation of solution of SDE's, enabled many searchers in different domains to use these equations to modeling and to analyse practical problems, in financial and actuarial modeling and other areas of application, for example modelling and simulate of dispersion in shallow water using the attractive center (Boukhetala K, 1996). We hope that the package presented here and the updated survey on the subject might be of help for practitioners, postgraduate and PhD students, and researchers in the field who might want to implement new methods.
Author: Arsalane Chouaib Guidoum, Kamal Boukhetala
Maintainer: Arsalane Chouaib Guidoum

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Package mmcm updated to version 1.2-5 with previous version 1.2-4 dated 2013-01-20

Title: Modified Maximum Contrast Method
Description: This package provides an implementation of modified maximum contrast methods and the maximum contrast method. This version supports functions mmcm.mvt, mcm.mvt that gives P-value by using randomized quasi-Monte Carlo method from pmvt function of package mvtnorm, and mmcm.resamp that gives P-value by using the permutation method.
Author: Kengo NAGASHIMA and Yasunori SATO
Maintainer: Kengo NAGASHIMA

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Package isotone updated to version 1.0-2 with previous version 1.0-1 dated 2011-01-23

Title: Active set and generalized PAVA for isotone optimization
Description: Contains two main functions: gpava() for solving general isotone regression problem using the pool-adjacent-violators algorithm (PAVA). activeSet() provides a framework of active set methods for isotone optimization problems with arbitrary order restrictions. Various types of loss functions are pre-specified.
Author: Patrick Mair [aut, cre], Jan De Leeuw [aut], Kurt Hornik [aut]
Maintainer: Patrick Mair

Diff between isotone versions 1.0-1 dated 2011-01-23 and 1.0-2 dated 2014-09-10

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Package hwriter updated to version 1.3.2 with previous version 1.3.1 dated 2014-08-23

Title: HTML Writer - Outputs R objects in HTML format
Description: Easy-to-use and versatile functions to output R objects in HTML format
Author: Gregoire Pau
Maintainer: Gregoire Pau

Diff between hwriter versions 1.3.1 dated 2014-08-23 and 1.3.2 dated 2014-09-10

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Package dunn.test updated to version 1.2.0 with previous version 1.1.0 dated 2014-08-24

Title: Dunn's test of multiple comparisons using rank sums
Description: dunn.test computes Dunn's test (1964) for stochastic dominance and reports the results among multiple pairwise comparisons after a Kruskal-Wallis test for stochastic dominance among k groups (Kruskal and Wallis, 1952). The interpretation of stochastic dominance requires an assumption that the CDF of one group does not cross the CDF of the other. dunn.test makes k(k-1)/2 multiple pairwise comparisons based on Dunn's z-test-statistic approximations to the actual rank statistics. The null hypothesis for each pairwise comparison is that the probability of observing a randomly selected value from the first group that is larger than a randomly selected value from the second group equals one half; this null hypothesis corresponds to that of the Wilcoxon-Mann-Whitney rank-sum test. Like the rank-sum test, if the data can be assumed to be continuous, and the distributions are assumed identical except for a difference in location, Dunn's test may be understood as a test for median difference. dunn.test accounts for tied ranks.
Author: Alexis Dinno
Maintainer: Alexis Dinno

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Tue, 09 Sep 2014

Package zCompositions updated to version 1.0.2 with previous version 1.0.1 dated 2014-06-03

Title: Imputation of Zeros and Nondetects in Compositional Data Sets
Description: Principled methods to impute multivariate left-censored data and zeros in compositional data sets
Author: Javier Palarea-Albaladejo and Josep Antoni Martin-Fernandez
Maintainer: Javier Palarea-Albaladejo

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Package spaMM updated to version 1.3.0 with previous version 1.2.0 dated 2014-06-25

Title: Mixed Models, Particularly Spatial GLMMs
Description: Implements a collection of functions for inference in mixed models. It was developed in particular for GLMMs with spatial correlations, but also fits models with non-Gaussian random effects (e.g., Beta Binomial, or negative-binomial mixed models). Heteroskedasticity can further be fitted by a linear model. The algorithms are currently various Laplace approximations methods for ML or REML, in particular h-likelihood and penalized-likelihood methods.
Author: François Rousset [aut, cre, cph], Jean-Baptiste Ferdy [aut, cph]
Maintainer: François Rousset

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Package paleobioDB updated to version 0.2 with previous version 0.1 dated 2014-05-01

Title: paleobioDB: a package for downloading, visualizing and processing data from Paleobiology Database.
Description: paleobioDB version 0.2 has 19 functions to wrap each endpoint of the PaleobioDB API, plus 8 functions to visualize and process the fossil data. The API documentation for the Paleobiology Database can be found in .
Author: Sara Varela [aut, cre], Javier González Hernández [aut], Luciano Fabris Sgarbi [aut]
Maintainer: Sara Varela

Diff between paleobioDB versions 0.1 dated 2014-05-01 and 0.2 dated 2014-09-09

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Package mnlogit updated to version 1.2.0 with previous version 1.1.1 dated 2014-04-10

Title: Multinomial Logit Model
Description: Time and memory efficient estimation of multinomial logit models using maximum likelihood method. Numerical optimization performed by Newton-Raphson method using an optimized, parallel C++ library to achieve fast computation of Hessian matrices. Motivated by large scale multiclass classification problems in econometrics and machine learning.
Author: Asad Hasan, Wang Zhiyu, Alireza S. Mahani
Maintainer: Asad Hasan

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Package taxize updated to version 0.4.0 with previous version 0.3.0 dated 2014-05-20

Title: Taxonomic information from around the web.
Description: Taxonomic information from around the web. This package interacts with a suite of web APIs for taxonomic tasks, such as verifying species names, getting taxonomic hierarchies, and verifying name spelling.
Author: Scott Chamberlain [aut, cre], Eduard Szoecs [aut], Carl Boettiger [aut], Karthik Ram [aut], Ignasi Bartomeus [aut], John Baumgartner [aut]
Maintainer: Scott Chamberlain

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Permanent link

Package ngspatial updated to version 1.0-4 with previous version 1.0-3 dated 2013-12-07

Title: Fitting the centered autologistic and sparse spatial generalized linear mixed models for areal data
Description: ngspatial provides tools for analyzing spatial data, especially non-Gaussian areal data. The current version supports the sparse spatial generalized linear mixed model of Hughes and Haran (2013) and the centered autologistic model of Caragea and Kaiser (2009).
Author: John Hughes and Xiaohui Cui
Maintainer: John Hughes

Diff between ngspatial versions 1.0-3 dated 2013-12-07 and 1.0-4 dated 2014-09-09

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Permanent link

Package fpc updated to version 2.1-8 with previous version 2.1-7 dated 2014-01-29

Title: Flexible procedures for clustering
Description: Various methods for clustering and cluster validation. Fixed point clustering. Linear regression clustering. Clustering by merging Gaussian mixture components. Symmetric and asymmetric discriminant projections for visualisation of the separation of groupings. Cluster validation statistics for distance based clustering including corrected Rand index. Cluster-wise cluster stability assessment. Methods for estimation of the number of clusters: Calinski-Harabasz, Tibshirani and Walther's prediction strength, Fang and Wang's bootstrap stability. Gaussian/multinomial mixture fitting for mixed continuous/categorical variables. Variable-wise statistics for cluster interpretation. DBSCAN clustering. Interface functions for many clustering methods implemented in R, including estimating the number of clusters with kmeans, pam and clara. Modality diagnosis for Gaussian mixtures. For an overview see package?fpc.
Author: Christian Hennig
Maintainer: Christian Hennig

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More information about fpc at CRAN
Permanent link

Package bpkde updated to version 1.0-7 with previous version 1.0-4 dated 2014-05-27

Title: Back-Projected Kernel Density Estimation
Description: Nonparametric multivariate kernel density \ estimation using a back-projected kernel.
Author: Kjell Konis , Victor M. Panaretos .
Maintainer: Kjell Konis

Diff between bpkde versions 1.0-4 dated 2014-05-27 and 1.0-7 dated 2014-09-09

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More information about bpkde at CRAN
Permanent link

Package investr updated to version 1.1.1 with previous version 1.1.0 dated 2014-07-14

Title: Inverse estimation/calibration functions
Description: This package provides functions to facilitate inverse estimation/calibration in linear, nonlinear, and (linear) mixed models. A generic function is also provided for plotting fitted regression models with or without confidence/prediction bands that may be of use to the general user.
Author: Brandon M. Greenwell
Maintainer: Brandon M. Greenwell

Diff between investr versions 1.1.0 dated 2014-07-14 and 1.1.1 dated 2014-09-09

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More information about investr at CRAN
Permanent link

Package PReMiuM updated to version 3.0.29 with previous version 3.0.28 dated 2014-06-30

Title: Dirichlet Process Bayesian Clustering, Profile Regression
Description: Dirichlet process Bayesian clustering, also known as profile regression.
Author: David I. Hastie , Silvia Liverani , Aurore J. Lavigne, Lucy Leigh, Lamiae Azizi, Sylvia Richardson
Maintainer: Silvia Liverani

Diff between PReMiuM versions 3.0.28 dated 2014-06-30 and 3.0.29 dated 2014-09-09

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Permanent link

Package TripleR updated to version 1.4 with previous version 1.2.1 dated 2013-10-02

Title: Social Relation Model (SRM) analyses for single or multiple round-robin groups
Description: Social Relation Model (SRM) analyses for single or multiple round-robin groups are performed. These analyses are either based on one manifest variable, one latent construct measured by two manifest variables, two manifest variables and their bivariate relations, or two latent constructs each measured by two manifest variables. Within-group t-tests for variance components and covariances are provided for single groups, between-groups t-tests for multiple groups. Handling for missing values is provided.
Author: F. D. Schönbrodt, M. D. Back, S. C. Schmukle
Maintainer: Felix Schönbrodt

Diff between TripleR versions 1.2.1 dated 2013-10-02 and 1.4 dated 2014-09-09

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Package spam updated to version 1.0-1 with previous version 0.41-0 dated 2014-02-26

Title: SPArse Matrix
Description: Set of functions for sparse matrix algebra. Differences with SparseM/Matrix are: (1) we only support (essentially) one sparse matrix format, (2) based on transparent and simple structure(s), (3) tailored for MCMC calculations within GMRF. (4) S3 and S4 like-"compatible" ... and it is fast.
Author: Reinhard Furrer [aut, cre], Florian Gerber [ctb]
Maintainer: Reinhard Furrer

Diff between spam versions 0.41-0 dated 2014-02-26 and 1.0-1 dated 2014-09-09

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 spam-1.0-1/spam/R/foreign.R                               |   23 
 spam-1.0-1/spam/R/helper.R                                |   43 -
 spam-1.0-1/spam/R/kronecker.R                             |    4 
 spam-1.0-1/spam/R/math.R                                  |only
 spam-1.0-1/spam/R/permutation.R                           |    6 
 spam-1.0-1/spam/R/precmat.R                               |    2 
 spam-1.0-1/spam/R/profile.R                               |   22 
 spam-1.0-1/spam/R/rmvnorm.R                               |   76 -
 spam-1.0-1/spam/R/rowcolstats.R                           |   16 
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 spam-1.0-1/spam/R/s4coerce.R                              |only
 spam-1.0-1/spam/R/spam_solve.R                            |  121 +-
 spam-1.0-1/spam/R/subset.R                                |   79 +
 spam-1.0-1/spam/R/tailhead.R                              |only
 spam-1.0-1/spam/R/tcrossprod.R                            |only
 spam-1.0-1/spam/R/toepliz.R                               |    4 
 spam-1.0-1/spam/R/xybind.R                                |    2 
 spam-1.0-1/spam/README                                    |only
 spam-1.0-1/spam/demo/article-jss-example1.R               |    7 
 spam-1.0-1/spam/demo/article-jss-example2.R               |    9 
 spam-1.0-1/spam/demo/article-jss.R                        |    9 
 spam-1.0-1/spam/inst/0ChangeLog                           |only
 spam-1.0-1/spam/inst/0LICENSE                             |only
 spam-1.0-1/spam/inst/CITATION                             |    9 
 spam-1.0-1/spam/inst/NEWS                                 |  197 ++++
 spam-1.0-1/spam/man/chol.Rd                               |   27 
 spam-1.0-1/spam/man/coerce.Rd                             |only
 spam-1.0-1/spam/man/coercion.Rd                           |only
 spam-1.0-1/spam/man/constructors.Rd                       |only
 spam-1.0-1/spam/man/crossprod.Rd                          |only
 spam-1.0-1/spam/man/det.Rd                                |   12 
 spam-1.0-1/spam/man/diff.Rd                               |only
 spam-1.0-1/spam/man/dim.Rd                                |   29 
 spam-1.0-1/spam/man/headtail.Rd                           |    8 
 spam-1.0-1/spam/man/image.Rd                              |   15 
 spam-1.0-1/spam/man/kronecker.Rd                          |    3 
 spam-1.0-1/spam/man/makeprec.Rd                           |   11 
 spam-1.0-1/spam/man/math.Rd                               |  121 +-
 spam-1.0-1/spam/man/math2.Rd                              |   30 
 spam-1.0-1/spam/man/methods.Rd                            |   10 
 spam-1.0-1/spam/man/nearestdist.Rd                        |   26 
 spam-1.0-1/spam/man/operations.Rd                         |    3 
 spam-1.0-1/spam/man/options.Rd                            |   37 
 spam-1.0-1/spam/man/ordering.Rd                           |   14 
 spam-1.0-1/spam/man/pad.Rd                                |only
 spam-1.0-1/spam/man/permutation.Rd                        |    8 
 spam-1.0-1/spam/man/powerboost.Rd                         |    7 
 spam-1.0-1/spam/man/print.Rd                              |    9 
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 spam-1.0-1/spam/man/rmvnorm.const.Rd                      |    4 
 spam-1.0-1/spam/man/s3only.Rd                             |only
 spam-1.0-1/spam/man/solve.Rd                              |   35 
 spam-1.0-1/spam/man/spam-class.Rd                         |   32 
 spam-1.0-1/spam/man/spam-package.Rd                       |   27 
 spam-1.0-1/spam/man/spam.creation.Rd                      |   22 
 spam-1.0-1/spam/man/summary.Rd                            |   59 -
 spam-1.0-1/spam/man/xybind.Rd                             |   11 
 spam-1.0-1/spam/src/spamown.f                             |   56 -
 spam-1.0-1/spam/src/spamown2.f                            |    8 
 spam-1.0-1/spam/tests/constructors.R                      |only
 spam-1.0-1/spam/tests/constructors.Rout.save              |only
 spam-1.0-1/spam/tests/covmat.Rout.save                    |    6 
 spam-1.0-1/spam/tests/crossprod.R                         |only
 spam-1.0-1/spam/tests/crossprod.Rout.save                 |only
 spam-1.0-1/spam/tests/demo_article-jss-example1.R         |   46 -
 spam-1.0-1/spam/tests/demo_article-jss-example1.Rout.save |   54 -
 spam-1.0-1/spam/tests/demo_article-jss-example2.R         |   41 -
 spam-1.0-1/spam/tests/demo_article-jss-example2.Rout.save |   55 -
 spam-1.0-1/spam/tests/demo_article-jss.Rout.save          |    6 
 spam-1.0-1/spam/tests/demo_cholesky.Rout.save             |    6 
 spam-1.0-1/spam/tests/demo_spam.Rout.save                 |    6 
 spam-1.0-1/spam/tests/demo_timing.Rout.save               |    6 
 spam-1.0-1/spam/tests/diff.R                              |    9 
 spam-1.0-1/spam/tests/diff.Rout.save                      |   11 
 spam-1.0-1/spam/tests/dim.R                               |only
 spam-1.0-1/spam/tests/dim.Rout.save                       |only
 spam-1.0-1/spam/tests/displays.Rout.save                  |    6 
 spam-1.0-1/spam/tests/dist.Rout.save                      |    6 
 spam-1.0-1/spam/tests/foreign.Rout.save                   |    4 
 spam-1.0-1/spam/tests/helper.R                            |    5 
 spam-1.0-1/spam/tests/helper.Rout.save                    |    6 
 spam-1.0-1/spam/tests/jss_areal_counts.R                  |only
 spam-1.0-1/spam/tests/jss_areal_counts.Rout.save          |only
 spam-1.0-1/spam/tests/kronecker.Rout.save                 |    6 
 spam-1.0-1/spam/tests/math.R                              |only
 spam-1.0-1/spam/tests/math.Rout.save                      |only
 spam-1.0-1/spam/tests/mle.R                               |    1 
 spam-1.0-1/spam/tests/mle.Rout.save                       |    7 
 spam-1.0-1/spam/tests/norm.Rout.save                      |    6 
 spam-1.0-1/spam/tests/ops.R                               |only
 spam-1.0-1/spam/tests/ops.Rout.save                       |only
 spam-1.0-1/spam/tests/overall.R                           |   36 
 spam-1.0-1/spam/tests/overall.Rout.save                   |   16 
 spam-1.0-1/spam/tests/permutation.Rout.save               |    6 
 spam-1.0-1/spam/tests/rowcolstats.Rout.save               |    6 
 spam-1.0-1/spam/tests/solve.Rout.save                     |    6 
 spam-1.0-1/spam/tests/spamlist.R                          |    6 
 spam-1.0-1/spam/tests/spamlist.Rout.save                  |    6 
 spam-1.0-1/spam/tests/subsetting.Rout.save                |    6 
 spam-1.0-1/spam/tests/xybind.Rout.save                    |    6 
 111 files changed, 1237 insertions(+), 1407 deletions(-)

More information about spam at CRAN
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Package hypergea updated to version 1.2.1 with previous version 1.0.1 dated 2014-07-10

Title: Hypergeometric tests
Description: Package to perform (exact) hypergeometric tests on IxJ and 2x2x2 contingency tables using parallelised C code
Author: Markus Boenn
Maintainer: Markus Boenn

Diff between hypergea versions 1.0.1 dated 2014-07-10 and 1.2.1 dated 2014-09-09

 DESCRIPTION           |    8 
 MD5                   |    7 
 R/hypergea-internal.R |    9 
 inst                  |only
 src/hypergeom_IxJ.cpp |  498 +++++++++++++++++++++++++++++++++++++-------------
 5 files changed, 385 insertions(+), 137 deletions(-)

More information about hypergea at CRAN
Permanent link


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