Title: Structural Equation Models
Diff between sem versions 0.9-19 dated 2009-10-11 and 0.9-20 dated 2010-03-14
More information about sem at CRAN
Description: This package contains functions for fitting general linear
structural equation models (with observed and unobserved
variables) by the method of maximum likelihood using the RAM
approach, and for fitting structural equations in
observed-variable models by two-stage least squares.
Author: John Fox
Maintainer: John Fox
DESCRIPTION | 10 +++++-----
R/sem.R | 4 ++--
inst/CHANGES | 4 ++++
3 files changed, 11 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: R object-oriented programming with or without references
Diff between R.oo versions 1.6.7 dated 2010-01-22 and 1.7.0 dated 2010-03-14
More information about R.oo at CRAN
Description: Methods and classes for object-oriented programming in R
with or without references. Large effort has been made on
making definition of methods as simple as possible with a
minimum of maintenance for package developers. The package has
been developed since 2001 and is now considered very stable.
This is a cross-platform package implemented in pure R that
defines standard S3 classes without any tricks.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 8 ++++----
NAMESPACE |only
R/999.package.R | 5 +++++
R/zzz.R | 4 +++-
inst/NEWS | 4 ++++
5 files changed, 16 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: Utility function for defining S3 methods
Diff between R.methodsS3 versions 1.1.0 dated 2010-01-03 and 1.2.0 dated 2010-03-14
More information about R.methodsS3 at CRAN
Description: Methods that simplify the setup of S3 generic functions
and S3 methods. Major effort has been made in making
definition of methods as simple as possible with a minimum of
maintenance for package developers. For example, generic
functions are created automatically, if missing, and naming
conflict are automatically solved, if possible. The method
setMethodS3() is a good start for those who in the future want
to migrate to S4. This is a cross-platform package implemented
in pure R and generates standard S3 methods.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 8 ++++----
NAMESPACE |only
R/zzz.R | 4 +++-
inst/NEWS | 4 ++++
4 files changed, 11 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: Fast and light-weight caching of objects
Diff between R.cache versions 0.2.0 dated 2009-10-18 and 0.3.0 dated 2010-03-14
More information about R.cache at CRAN
Description: Methods for memoization, that is, caching arbitrary R
objects in persistent memory. Objects can be loaded and saved
stratified on a set of hashing objects.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 10 ++++------
NAMESPACE |only
R/zzz.R | 3 ++-
inst/NEWS | 4 ++++
4 files changed, 10 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: Meta-Analysis with Mean Differences (MAd) Rcmdr Plug-in
Diff between RcmdrPlugin.MAd versions 0.1 dated 2010-03-13 and 0.2 dated 2010-03-14
More information about RcmdrPlugin.MAd at CRAN
Description: This is an R-Commander plug-in for the MAd package
(Meta-Analysis with Mean Differences). This package enables the
user to conduct a meta-analysis in a menu-driven, graphical
user interface environment (e.g., SPSS), while having the full
statistical capabilities of R and the MAd package. The MAd
package itself contains a variety of useful functions for
conducting a research synthesis with mean differences data. One
of the unique features of the MAd package is in its integration
of user-friendly functions to complete many of the statistical
steps involved in a meta-analysis with mean differences. It
uses recommended procedures as described in The Handbook of
Research Synthesis and Meta-Analysis (Cooper, Hedges, &
Valentine, 2009).
Author: AC Del Re
Maintainer: AC Del Re
DESCRIPTION | 12 ++++-----
inst/etc/menus.txt | 52 ++++++++++++++++++++---------------------
man/RcmdrPlugin.MAd-package.Rd | 20 +++++++--------
3 files changed, 42 insertions(+), 42 deletions(-)
Path: /cran/updated | permanent link
Title: Estimation of CPDAG/PAG and causal inference using the IDA
algorithm
Diff between pcalg versions 0.1-9 dated 2009-09-23 and 1.0-0 dated 2010-03-14
More information about pcalg at CRAN
Description: Standard and robust estimation of the equivalence class of
a Directed Acyclic Graph (DAG) via the PC-Algorithm. The
equivalence class is represented by its (unique) Completetd
Partially Directed Acyclic Graph (CPDAG). Furthermore, a PAG
instead of a CPDAG can be estimated if latent variables and/or
selection variables are assumed to be present. Functions for
causal inference using the IDA algorithm (based on do-calculus
of Judea Pearl) are provided for CPDAGs.
Author: Markus Kalisch, Martin Maechler, Diego Colombo
Maintainer: Markus Kalisch
pcalg-0.1-9/pcalg/man/decHeur.Rd |only
pcalg-0.1-9/pcalg/tests/test_decHeur.R |only
pcalg-1.0-0/pcalg/DESCRIPTION | 30
pcalg-1.0-0/pcalg/NAMESPACE | 22
pcalg-1.0-0/pcalg/R/pcalg.R | 2006 +++++++++++++++++++++---
pcalg-1.0-0/pcalg/data |only
pcalg-1.0-0/pcalg/inst/doc/Sweave-pcalg.Rnw | 7
pcalg-1.0-0/pcalg/inst/doc/Sweave-pcalg.pdf |binary
pcalg-1.0-0/pcalg/inst/doc/auto/Sweave-pcalg.el | 5
pcalg-1.0-0/pcalg/man/beta.special.Rd | 12
pcalg-1.0-0/pcalg/man/beta.special.pcObj.Rd | 40
pcalg-1.0-0/pcalg/man/binCItest.Rd |only
pcalg-1.0-0/pcalg/man/disCItest.Rd |only
pcalg-1.0-0/pcalg/man/dsep.Rd |only
pcalg-1.0-0/pcalg/man/dsepTest.Rd |only
pcalg-1.0-0/pcalg/man/fci.Rd |only
pcalg-1.0-0/pcalg/man/fciAlgo-class.Rd |only
pcalg-1.0-0/pcalg/man/gSquareBin.Rd |only
pcalg-1.0-0/pcalg/man/gSquareDis.Rd |only
pcalg-1.0-0/pcalg/man/gaussCItest.Rd |only
pcalg-1.0-0/pcalg/man/ida.Rd |only
pcalg-1.0-0/pcalg/man/idaFast.Rd |only
pcalg-1.0-0/pcalg/man/mcor.Rd | 2
pcalg-1.0-0/pcalg/man/pc.Rd |only
pcalg-1.0-0/pcalg/man/pcAlgo-class.Rd | 159 +
pcalg-1.0-0/pcalg/man/pcAlgo.Rd | 17
pcalg-1.0-0/pcalg/man/pcSelect.presel.Rd | 2
pcalg-1.0-0/pcalg/man/pcalg-internal.Rd | 3
pcalg-1.0-0/pcalg/man/pdsep.Rd |only
pcalg-1.0-0/pcalg/man/plotSG.Rd |only
pcalg-1.0-0/pcalg/man/qreach.Rd |only
pcalg-1.0-0/pcalg/man/rmvDAG.Rd | 3
pcalg-1.0-0/pcalg/man/skeleton.Rd |only
pcalg-1.0-0/pcalg/tests/discreteData.rda |only
pcalg-1.0-0/pcalg/tests/test_amat2dag.R | 2
pcalg-1.0-0/pcalg/tests/test_dsep.R |only
pcalg-1.0-0/pcalg/tests/test_fci.R |only
pcalg-1.0-0/pcalg/tests/test_gSquareBin.R |only
pcalg-1.0-0/pcalg/tests/test_gSquareDis.R |only
pcalg-1.0-0/pcalg/tests/test_ida.R |only
pcalg-1.0-0/pcalg/tests/test_idaFast.R |only
pcalg-1.0-0/pcalg/tests/test_pc.R |only
pcalg-1.0-0/pcalg/tests/test_skeleton.R |only
43 files changed, 1966 insertions(+), 344 deletions(-)
Path: /cran/updated | permanent link
Title: Meta-Analysis with Correlations (MAc) Rcmdr Plug-in
Diff between RcmdrPlugin.MAc versions 1.0.6 dated 2010-03-13 and 1.0.7 dated 2010-03-14
More information about RcmdrPlugin.MAc at CRAN
Description: This is an R-Commander plug-in for the MAc package
(Meta-Analysis with Correlations). This package enables the
user to conduct a meta-analysis in a menu-driven, graphical
user interface environment (e.g., SPSS), while having the full
statistical capabilities of R and the MAc package. The MAc
package itself contains a variety of useful functions for
conducting a research synthesis with correlational data. One of
the unique features of the MAc package is in its integration of
user-friendly functions to complete the majority of statistical
steps involved in a meta-analysis with correlations. It uses
recommended procedures as described in The Handbook of Research
Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine,
2009).
Author: AC Del Re
Maintainer: AC Del Re
DESCRIPTION | 8 ++---
R/RcmdrPlugin.R | 1
inst/etc/menus.txt | 60 ++++++++++++++++++++---------------------
man/RcmdrPlugin.MAc-package.Rd | 10 +++---
4 files changed, 40 insertions(+), 39 deletions(-)
Path: /cran/updated | permanent link
Title: Analysis of Spatially Distributed Data
Diff between RSurvey versions 0.4.9 dated 2010-02-15 and 0.5.0 dated 2010-03-14
More information about RSurvey at CRAN
Description: This package is a processing program for spatially
distributed data. The program is capable of error corrections,
polygon manipulation, and data visualization. A graphical user
interface is provided.
Author: Jason C. Fisher
Maintainer: Jason C. Fisher
DESCRIPTION | 8 +-
R/polyAutocrop.R | 3
R/polyManage.R | 164 +++++++++++++++++++++++++-----------------------
R/srvy.R | 8 +-
R/srvy.config.R | 30 ++++----
R/srvy.pref.R | 73 ++++++++++-----------
R/srvy.process.R | 15 ++++
R/srvy.vars.R | 6 -
data/project.rda |binary
man/RSurvey-package.Rd | 22 ++----
man/autocrop.Rd | 2
man/axesLimits.Rd | 16 ++--
man/getFile.Rd | 2
man/plotSurvey2d.Rd | 16 ++--
man/plotSurvey3d.Rd | 10 +-
man/plotTime.Rd | 8 +-
man/point.on.surface.Rd | 6 -
man/polyAutocrop.Rd | 11 +--
man/polyCutout.Rd | 12 +--
man/polyManage.Rd | 8 +-
man/polyTranslate.Rd | 4 -
man/readFile.Rd | 30 ++++----
man/srvy.Rd | 2
man/srvy.dat.Rd | 18 ++---
man/srvy.pref.Rd | 2
25 files changed, 254 insertions(+), 222 deletions(-)
Path: /cran/updated | permanent link
Title: Hierarchical Exponential-Family Random Graph Models
Diff between hergm versions 1.1 dated 2010-03-11 and 1.1-1 dated 2010-03-13
More information about hergm at CRAN
Description: The R package 'hergm' implements Hierarchical
Exponential-Family Random Graph Models (HERGMs), which can be
used to model a wide range of relational data (networks).
'hergm' implements both simulation and Bayesian inference.
Author: Michael Schweinberger
Maintainer: Michael Schweinberger
hergm-1.1-1/hergm/DESCRIPTION | 8 ++++----
hergm-1.1-1/hergm/R/hergm.postprocess.R | 9 +++++++--
hergm-1.1-1/hergm/R/hergm.preprocess.R | 3 ++-
hergm-1.1-1/hergm/R/hergm.relabel.R | 3 +--
hergm-1.1-1/hergm/demo/example.r | 3 ++-
hergm-1.1-1/hergm/man/hergm.postprocess.Rd | 3 +++
hergm-1.1-1/hergm/src/h_ergm.c | 2 ++
hergm-1.1/hergm/.Rd2dvi12966 |only
8 files changed, 21 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Title: Power in a Group Sequential Design
Diff between PwrGSD versions 1.15 dated 2008-07-11 and 1.16 dated 2010-03-13
More information about PwrGSD at CRAN
Description: Tools the evaluation of interim analysis plans for
sequentially monitored trials on a survival endpoint; tools to
construct efficacy and futility boundaries, for deriving power
of a sequential design at a specified alternative, template for
evaluating the performance of candidate plans at a set of time
varying alternatives.
Author: Grant Izmirlian
Maintainer: Grant Izmirlian
PwrGSD-1.15/PwrGSD/inst/doc/Ch6-GrpSeqBnds.Rd |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-fig1-LanDemets.eps |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-fig1-LanDemets.pdf |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-fig2-StochCurt.eps |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-fig2-StochCurt.pdf |only
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PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-incl-ex2-plot.pdf |only
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PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1.dvi |only
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PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1.out |only
PwrGSD-1.15/PwrGSD/inst/doc/GrpSeqBnds-vignette-1.tex |only
PwrGSD-1.15/PwrGSD/inst/doc/PwrGSD-manual.pdf |only
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PwrGSD-1.15/PwrGSD/inst/doc/Rplots.ps |only
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PwrGSD-1.15/PwrGSD/man/Ch3-Power.Rd |only
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PwrGSD-1.15/PwrGSD/man/Ch5-plot.cpd.PwrGSD.Rd |only
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PwrGSD-1.15/PwrGSD/man/Ch8-SimGSB.Rd |only
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PwrGSD-1.15/PwrGSD/man/M5-RR2RCM.Rd |only
PwrGSD-1.15/PwrGSD/man/M6-lookup.Rd |only
PwrGSD-1.15/PwrGSD/man/M7-lung.Rd |only
PwrGSD-1.15/PwrGSD/man/M8-DX.Rd |only
PwrGSD-1.15/PwrGSD/man/M9-pste.Rd |only
PwrGSD-1.15/PwrGSD/src/normdist.c |only
PwrGSD-1.16/PwrGSD/DESCRIPTION | 13
PwrGSD-1.16/PwrGSD/NAMESPACE | 8
PwrGSD-1.16/PwrGSD/R/PwrGSD.R | 2823 +++++-----
PwrGSD-1.16/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-incl-ex1-plot.eps | 46
PwrGSD-1.16/PwrGSD/inst/doc/GrpSeqBnds-vignette-1-incl-ex1-plot.pdf | 118
PwrGSD-1.16/PwrGSD/inst/doc/GrpSeqBnds-vignette-1.Rnw | 14
PwrGSD-1.16/PwrGSD/inst/doc/GrpSeqBnds-vignette-1.pdf |binary
PwrGSD-1.16/PwrGSD/inst/doc/PwrGSD-vignette-1.Rnw | 4
PwrGSD-1.16/PwrGSD/inst/doc/PwrGSD-vignette-1.pdf |binary
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PwrGSD-1.16/PwrGSD/man/ChC2-pste.Rd |only
PwrGSD-1.16/PwrGSD/src/AsyPwrGSD.c | 60
PwrGSD-1.16/PwrGSD/src/SimPwrGSD.c | 14
PwrGSD-1.16/PwrGSD/src/StCu2Bnds.c | 10
PwrGSD-1.16/PwrGSD/src/drift.c | 9
PwrGSD-1.16/PwrGSD/src/grpseqbnds.c | 30
98 files changed, 1690 insertions(+), 1570 deletions(-)
Path: /cran/updated | permanent link
Title: Basic functions for the TractoR (tractography with R) bundle
Diff between tractor.base versions 1.3.0 dated 2009-11-10 and 1.4.0 dated 2010-03-13
More information about tractor.base at CRAN
Description: The tractor.base package consists of functions for working
with magnetic resonance images. It can read and write image
files stored in Analyze, NIfTI and DICOM formats (DICOM support
is read only), generate images for use as regions of interest,
and manipulate and visualise images.
Author: Jon Clayden
Maintainer: Jon Clayden
DESCRIPTION | 8 -
R/dicom.R | 183 ++++++++++++++++++++++++++++++---------------
R/generate.R | 7 +
R/misc.R | 12 ++
R/mri_image.R | 29 +++++++
R/output.R | 5 -
R/png.R | 2
R/viz.R | 58 +++++++++++++-
data/dictionary.txt | 1
man/newMriImageWithData.Rd | 7 +
man/output.Rd | 2
man/visualisation.Rd | 6 +
12 files changed, 246 insertions(+), 74 deletions(-)
Path: /cran/updated | permanent link
Title: Infrastructure for seriation
Diff between seriation versions 1.0-1 dated 2009-08-25 and 1.0-2 dated 2010-03-13
More information about seriation at CRAN
Description: Infrastructure for seriation with an implementation of
several seriation/sequencing techniques to reorder matrices,
dissimilarity matrices, and dendrograms. Also contains some
visualizations techniques based on seriation.
Author: Michael Hahsler, Christian Buchta and Kurt Hornik
Maintainer: Michael Hahsler
DESCRIPTION | 8 ++++----
NAMESPACE | 1 +
R/bertinplot.R | 15 +++++++--------
R/permute.R | 1 +
inst/doc/seriation.Rnw | 2 +-
inst/doc/seriation.pdf |binary
6 files changed, 14 insertions(+), 13 deletions(-)
Path: /cran/updated | permanent link
Title: SAM: Significance Analysis of Microarrays
Diff between samr versions 1.27 dated 2010-01-04 and 1.28 dated 2010-03-13
More information about samr at CRAN
Description: Significance Analysis of Microarrays
Author: R. Tibshirani, G. Chu, T. Hastie, Balasubramanian Narasimhan
Maintainer: Rob Tibshirani
DESCRIPTION | 6 +++---
R/samr.morefuns.R | 3 +++
2 files changed, 6 insertions(+), 3 deletions(-)
Path: /cran/updated | permanent link
Title: Solve systems of non linear equations
Diff between nleqslv versions 1.5 dated 2009-09-05 and 1.6 dated 2010-03-13
More information about nleqslv at CRAN
Description: Solve a system of non linear equations using a Broyden or
a Newton method with a choice of global strategies such as
linesearch and trust region. There are options for using a
numerical or an analytical jacobian and fixed or automatic
scaling of parameters.
Author: Berend Hasselman
Maintainer: Berend Hasselman
nleqslv-1.5/nleqslv/src/liqrev.f |only
nleqslv-1.5/nleqslv/src/liqrup.f |only
nleqslv-1.5/nleqslv/src/lixtra.f |only
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nleqslv-1.5/nleqslv/src/nwout.f |only
nleqslv-1.5/nleqslv/src/nwoutx.c |only
nleqslv-1.6/nleqslv/DESCRIPTION | 8 -
nleqslv-1.6/nleqslv/NEWS | 6
nleqslv-1.6/nleqslv/man/nleqslv.Rd | 2
nleqslv-1.6/nleqslv/src/lautil.f |only
nleqslv-1.6/nleqslv/src/nwbrdn.f | 219 ++++++++++++++---------------
nleqslv-1.6/nleqslv/src/nwddlg.f | 100 ++++++-------
nleqslv-1.6/nleqslv/src/nwglsh.f | 58 +++----
nleqslv-1.6/nleqslv/src/nwnleq.f | 10 -
nleqslv-1.6/nleqslv/src/nwnwtn.f | 132 ++++++++---------
nleqslv-1.6/nleqslv/src/nwout.c |only
nleqslv-1.6/nleqslv/src/nwpdlg.f | 93 ++++++------
nleqslv-1.6/nleqslv/src/nwqlsh.f | 68 ++++-----
nleqslv-1.6/nleqslv/src/nwutil.f | 121 ++++++++++------
nleqslv-1.6/nleqslv/tests/brdban.Rout.save | 16 +-
nleqslv-1.6/nleqslv/tests/chquad.Rout.save | 36 ++--
nleqslv-1.6/nleqslv/tests/dslnex.Rout.save | 4
22 files changed, 451 insertions(+), 422 deletions(-)
Path: /cran/updated | permanent link
Title: Resampling-based multiple hypothesis testing
Diff between multtest versions 2.2.0 dated 2009-11-13 and 2.3.2 dated 2010-03-13
More information about multtest at CRAN
Description: Non-parametric bootstrap and permutation resampling-based
multiple testing procedures (including empirical Bayes methods)
for controlling the family-wise error rate (FWER), generalized
family-wise error rate (gFWER), tail probability of the
proportion of false positives (TPPFP), and false discovery rate
(FDR). Several choices of bootstrap-based null distribution
are implemented (centered, centered and scaled,
quantile-transformed). Single-step and step-wise methods are
available. Tests based on a variety of t- and F-statistics
(including t-statistics based on regression parameters from
linear and survival models as well as those based on
correlation parameters) are included. When probing hypotheses
with t-statistics, users may also select a potentially faster
null distribution which is multivariate normal with mean zero
and variance covariance matrix derived from the vector
influence function. Results are reported in terms of adjusted
p-values, confidence regions and test statistic cutoffs. The
procedures are directly applicable to identifying
differentially expressed genes in DNA microarray experiments.
Author: Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra
Taylor, Sandrine Dudoit
Maintainer: Katherine S. Pollard
DESCRIPTION | 6 +++---
src/Rpack.c | 9 +++++----
src/pairt_sampling_fixed.c | 2 +-
3 files changed, 9 insertions(+), 8 deletions(-)
Path: /cran/updated | permanent link
Title: Group Sequential Design
Diff between gsDesign versions 2.0-5 dated 2009-07-01 and 2.2-11 dated 2010-03-13
More information about gsDesign at CRAN
Description: gsDesign is a package that derives group sequential
designs and describes their properties.
Author: Keaven Anderson
Maintainer: Keaven Anderson
DESCRIPTION | 9
NAMESPACE | 10
R/gsBinomial.R | 6
R/gsBinomialExact.R |only
R/gsCP.R | 33
R/gsDesign.R | 112
R/gsMethods.R | 469 -
R/gsNormalGrid.R | 6
R/gsSpending.R | 136
R/gsSurvival.R | 55
R/gsqplot.R |only
R/nEvents.R |only
inst/NewTests |only
inst/doc/gsDesignManual.pdf | 9632 ++++++++++++++++++------------------
man/binomial.Rd | 5
man/gsBinomialExact.Rd |only
man/gsCP.Rd | 97
man/gsDensity.Rd |only
man/gsDesign.Rd | 17
man/nSurvival.Rd | 111
man/normalGrid.Rd | 28
man/plot.gsDesign.Rd | 7
man/sfLinear.Rd |only
man/sfTDist.Rd | 2
man/sflogistic.Rd | 2
man/sfpoints.Rd | 1
src/gsdensity.c |only
tex/Sections/sfPoints.tex | 49
tex/Sections/spendfn.tex | 12
tex/figs/sfLinear.pdf |only
tex/tmphelp/Rd/gsBinomialExact.tex |only
tex/tmphelp/Rd/sfLinear.tex |only
tex/tmphelp/Rd/sfTDist.tex | 2
tex/tmphelp/Rd/sflogistic.tex | 2
tex/tmphelp/Rd/sfpoints.tex | 1
tex/tmphelp/tex/gsBinomialExact.tex |only
tex/tmphelp/tex/sfLinear.tex |only
37 files changed, 5655 insertions(+), 5149 deletions(-)
Path: /cran/updated | permanent link
Title: Co-correspondence analysis methods
Diff between cocorresp versions 0.1-7 dated 2008-10-23 and 0.1-9 dated 2010-03-13
More information about cocorresp at CRAN
Description: Fits predictive and symmetric co-correspondence analysis
(CoCA) models to relate one data matrix to another data matrix.
More specifically, CoCA maximises the weighted covariance
between the weighted averaged species scores of one community
and the weighted averaged species scores of another community.
CoCA attempts to find patterns that are common to both
communitities.
Author: Original Matlab routines by C.J.F. ter Braak and A.P.
Schaffers. R port by Gavin L. Simpson. Function simpls based on
simpls.fit (package pls) by Ron Wehrens and Bjorn-Helge Mevik.
Maintainer: Gavin L. Simpson
DESCRIPTION | 10 +++++-----
inst/CITATION | 11 +++++------
inst/ChangeLog | 11 +++++++++--
3 files changed, 19 insertions(+), 13 deletions(-)
Path: /cran/updated | permanent link
Title: Tests/Searches for significant clusters in genetic data.
Diff between bayesclust versions 2.1 dated 2009-03-01 and 3.0 dated 2010-03-13
More information about bayesclust at CRAN
Description: Bayes Clustering Package
Author: Gopal, V. and Fuentes, C. and Casella, G.
Maintainer: Gopal, V.
bayesclust-2.1/bayesclust/R/fdr.test.R |only
bayesclust-2.1/bayesclust/man/fdr.test.Rd |only
bayesclust-3.0/bayesclust/DESCRIPTION | 8
bayesclust-3.0/bayesclust/NAMESPACE | 10
bayesclust-3.0/bayesclust/R/cluster.optimal.R | 6
bayesclust-3.0/bayesclust/R/cluster.test.R | 135 +++++-----
bayesclust-3.0/bayesclust/R/combine.R |only
bayesclust-3.0/bayesclust/R/emp2pval.R | 26 -
bayesclust-3.0/bayesclust/R/emp2pval.cluster.test.R |only
bayesclust-3.0/bayesclust/R/emp2pval.cluster.test.reps.R |only
bayesclust-3.0/bayesclust/R/nulldensity.R | 6
bayesclust-3.0/bayesclust/R/plot.cluster.optimal.R | 73 ++---
bayesclust-3.0/bayesclust/R/plot.cluster.test.R | 2
bayesclust-3.0/bayesclust/R/plot.cluster.test.reps.R |only
bayesclust-3.0/bayesclust/R/print.summary.cluster.test.R | 2
bayesclust-3.0/bayesclust/R/print.summary.cluster.test.reps.R |only
bayesclust-3.0/bayesclust/R/summary.cluster.test.reps.R |only
bayesclust-3.0/bayesclust/data/egDataset1.rda |only
bayesclust-3.0/bayesclust/man/bayesclust-package.Rd | 14 -
bayesclust-3.0/bayesclust/man/cluster.optimal.Rd | 15 -
bayesclust-3.0/bayesclust/man/cluster.test.Rd | 32 +-
bayesclust-3.0/bayesclust/man/combine.Rd |only
bayesclust-3.0/bayesclust/man/cutoffs.Rd | 7
bayesclust-3.0/bayesclust/man/egDataset1.Rd |only
bayesclust-3.0/bayesclust/man/emp2pval.Rd | 53 ++-
bayesclust-3.0/bayesclust/man/hist.nulldensity.Rd | 7
bayesclust-3.0/bayesclust/man/nulldensity.Rd | 11
bayesclust-3.0/bayesclust/man/plot.cluster.optimal.Rd | 34 +-
bayesclust-3.0/bayesclust/man/plot.cluster.test.Rd | 26 +
bayesclust-3.0/bayesclust/man/summary.cluster.test.Rd | 23 -
30 files changed, 244 insertions(+), 246 deletions(-)
Path: /cran/updated | permanent link
Title: Analogue and weighted averaging methods for palaeoecology
Diff between analogue versions 0.6-22 dated 2009-11-05 and 0.6-23 dated 2010-03-13
More information about analogue at CRAN
Description: Fits Modern Analogue Technique and Weighted Averaging
transfer function models for prediction of environmental data
from species data, and related methods used in palaeoecology.
Author: Gavin L. Simpson, Jari Oksanen
Maintainer: Gavin L. Simpson
DESCRIPTION | 10 +++++-----
R/fixUpTol.R | 3 +--
R/minDC.R | 2 +-
R/plot.bayesF.R | 3 ++-
R/plot.roc.R | 33 +++++++++++++++++++--------------
R/roc.R | 3 ++-
R/tran.R | 2 +-
R/wa.R | 19 ++++++++++---------
R/wa.formula.R | 4 +++-
inst/ChangeLog | 32 ++++++++++++++++++++++++++++++++
man/bayesF.Rd | 4 +++-
man/plot.roc.Rd | 12 +++++++++++-
12 files changed, 90 insertions(+), 37 deletions(-)
Path: /cran/updated | permanent link
Title: Teaching GUI - prototype
Diff between TGUITeaching versions 0.9.5 dated 2010-03-12 and 0.9.6 dated 2010-03-13
More information about TGUITeaching at CRAN
Description: Trainings-GUI
Author: Matthias Templ, Gerlinde Dinges, Alexander Kowarik, Bernhard
Meindl
Maintainer: Bernhard Meindl
DESCRIPTION | 6 +++---
man/ex_praesident.Rd | 13 ++++++++++++-
2 files changed, 15 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Title: General Non-linear Optimization
Diff between Rsolnp versions 1.0 dated 2010-03-05 and 1.0-2 dated 2010-03-13
More information about Rsolnp at CRAN
Description: General Non-linear Optimization Using Augmented Lagrange
Multiplier Method
Author: Alexios Ghalanos and Stefan Theussl
Maintainer: Alexios Ghalanos
ChangeLog | 11 +++++++++++
DESCRIPTION | 10 +++++-----
R/helpers.R | 12 ++++++------
inst/CITATION |only
man/Rsolnp-package.Rd | 2 +-
5 files changed, 23 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Title: Rcpp R/C++ interface package
Diff between Rcpp versions 0.7.8 dated 2010-03-09 and 0.7.9 dated 2010-03-13
More information about Rcpp at CRAN
Description: Seamless R and C++ integration The Rcpp package contains a
C++ library that facilitates the integration of R and C++ in
various ways.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ...
The underlying C++ library also offers the Rcpp::wrap function which is
a templated function that transforms an arbitrary object into a
SEXP. This makes it straightforward to implement C++ logic in
terms of standard C++ types such as STL containers and then
wrap them when they need to be returned to R. Internally, wrap
uses advanced template meta programming techniques and
currently supports : primitive types (bool, int, double,
size_t, Rbyte, Rcomplex, std::string), STL containers (e.g
std::vector
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Simon Urbanek and David Reiss; based on code written during
2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel and Romain Francois
Rcpp-0.7.8/Rcpp/src/Rcpp/internal/convertible.h |only
Rcpp-0.7.9/Rcpp/DESCRIPTION | 8
Rcpp-0.7.9/Rcpp/NEWS | 12
Rcpp-0.7.9/Rcpp/R/RcppLdpath.R | 12
Rcpp-0.7.9/Rcpp/inst/ChangeLog | 32
Rcpp-0.7.9/Rcpp/inst/doc/Rcpp-introduction.Rnw | 16
Rcpp-0.7.9/Rcpp/inst/doc/Rcpp-introduction.pdf | 498 +++++-----
Rcpp-0.7.9/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary
Rcpp-0.7.9/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.html | 6
Rcpp-0.7.9/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.txt | 492 ++++-----
Rcpp-0.7.9/Rcpp/inst/examples/FastLM/benchmark.r | 10
Rcpp-0.7.9/Rcpp/inst/unitTests/runit.environments.R | 2
Rcpp-0.7.9/Rcpp/src/Rcpp/internal/wrap.h | 2
Rcpp-0.7.9/Rcpp/src/Rcpp/traits/is_convertible.h |only
Rcpp-0.7.9/Rcpp/src/Rcpp/traits/r_sexptype_traits.h | 2
Rcpp-0.7.9/Rcpp/src/Rcpp/traits/r_type_traits.h | 6
Rcpp-0.7.9/Rcpp/src/Rcpp/traits/same_type.h |only
Rcpp-0.7.9/Rcpp/src/Rcpp/traits/wrap_type_traits.h | 2
Rcpp-0.7.9/Rcpp/src/RcppCommon.h | 3
19 files changed, 581 insertions(+), 522 deletions(-)
Path: /cran/updated | permanent link
Title: Meta-Analysis with Correlations (MAc) Rcmdr Plug-in
Diff between RcmdrPlugin.MAc versions 1.0.5 dated 2010-03-01 and 1.0.6 dated 2010-03-13
More information about RcmdrPlugin.MAc at CRAN
Description: This is an R-Commander plug-in for the MAc package
(Meta-Analysis with Correlations). This package enables the
user to conduct a meta-analysis in a menu-driven, graphical
user interface environment (e.g., SPSS), while having the full
statistical capabilities of R and the MAc package. The MAc
package itself contains a variety of useful functions for
conducting a research synthesis with correlational data. One of
the unique features of the MAc package is in its integration of
user-friendly functions to complete the majority of statistical
steps involved in a meta-analysis with correlations. It uses
recommended procedures as described in The Handbook of Research
Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine,
2009).
Author: AC Del Re
Maintainer: AC Del Re
RcmdrPlugin.MAc-1.0.5/RcmdrPlugin.MAc/.Rd2dvi5756 |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/DESCRIPTION | 14
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/R/RcmdrPlugin.R | 1222 +++++++++-
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/inst/etc/menus.txt | 71
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/PubBiascmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/RcmdrPlugin.MAc-package.Rd | 16
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/Wifuncmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/ancova_to_d1cmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/ancova_to_d2cmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/d_to_gcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/f.ancova_to_dcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/f_to_dcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/lor_to_dcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/mean_to_d2cmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/mean_to_dcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/p.ancova_to_d1cmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/p.ancova_to_d2cmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/p_to_d1cmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/p_to_d2cmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/prop_to_dcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/prop_to_orcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/r_to_dcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/t_to_dcmd.Rd |only
RcmdrPlugin.MAc-1.0.6/RcmdrPlugin.MAc/man/tt.ancova_to_dcmd.Rd |only
24 files changed, 1243 insertions(+), 80 deletions(-)
Path: /cran/updated | permanent link
Title: Automating Mplus Model Estimation and Interpretation
Diff between MplusAutomation versions 0.2-2 dated 2010-03-11 and 0.2-3 dated 2010-03-13
More information about MplusAutomation at CRAN
Description: The MplusAutomation package leverages the flexibility of
the R language to automate latent variable model estimation and
interpretation using Mplus, a powerful latent variable modeling
program developed by Muthen and Muthen (www.statmodel.com).
Specifically, MplusAutomation provides routines for creating
related groups of models, running batches of models, and
extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist
Maintainer: Michael Hallquist
DESCRIPTION | 10 ++--
NAMESPACE | 5 +-
R/parseOutput.R | 84 +++++++++++++++++++++++++++++++++++++++++
man/HTMLSummaryTable.Rd |only
man/LatexSummaryTable.Rd |only
man/MplusAutomation-package.Rd | 8 ++-
man/createTable.Rd | 9 ++++
man/showSummaryTable.Rd |only
8 files changed, 107 insertions(+), 9 deletions(-)
Path: /cran/updated | permanent link
Title: Meta-Analysis with Mean Differences
Diff between MAd versions 0.1 dated 2010-03-07 and 0.2 dated 2010-03-13
More information about MAd at CRAN
Description: This is an integrated meta-analysis package for conducting
a research synthesis with mean differences data. One of the
unique features of this package is in its integration of
user-friendly functions to complete most of the statistical
steps involved in a meta-analysis with mean differences. It
uses recommended procedures as described in The Handbook of
Research Synthesis and Meta-Analysis (Cooper, Hedges, &
Valentine, 2009).
Author: AC Del Re & William T. Hoyt
Maintainer: AC Del Re
DESCRIPTION | 20 +++++++++----------
R/MAd.R | 52 ++++++++++++++++++++++++++++++++++++++++----------
man/CatComp.Rd | 10 ++++-----
man/CatMod.Rd | 4 +--
man/CatModGraph.Rd | 6 ++---
man/ComplData.Rd | 6 ++---
man/CorAtten.rd | 6 ++---
man/ForestPlot.Rd | 4 +--
man/FunnelPlot.Rd | 4 +--
man/Kappa.Rd | 6 ++---
man/MAd-package.Rd | 25 ++++++++++++++----------
man/MAreg1.Rd | 4 +--
man/MAreg2.Rd | 6 ++---
man/MAregGraph.Rd | 6 ++---
man/MeanDiff.Rd | 28 +++++++++++++++++---------
man/MeanDiffd.Rd | 29 ++++++++++++++++-----------
man/MeanDiffg.Rd | 17 +++++++++-------
man/MetaG.Rd | 6 +----
man/MultiModGraph.Rd | 10 +++++++--
man/OmnibusES.Rd | 6 +++--
man/PubBias.Rd | 2 -
man/Wifun.Rd | 2 -
man/ancova_to_d1.Rd | 2 -
man/d_to_g.Rd | 32 +++++++-----------------------
man/f.ancova_to_d.Rd | 19 +++++++++---------
man/f_to_d.Rd | 7 +++---
man/fail_to_d.Rd |only
man/lor_to_d.Rd | 7 +++---
man/mean_to_d.Rd | 7 ++----
man/mean_to_d2.Rd | 5 +---
man/or_to_d.Rd |only
man/p.ancova_to_d1.Rd | 7 ++----
man/p.ancova_to_d2.Rd | 7 ++----
man/p_to_d1.Rd | 7 ++----
man/p_to_d2.Rd | 7 ++----
man/prop_to_d.Rd | 7 ++----
man/prop_to_or.Rd | 7 ++----
man/r_from_chi.Rd | 9 +++-----
man/r_from_d.Rd | 7 ++----
man/r_from_d1.Rd | 7 ++----
man/r_from_t.Rd | 1
man/r_to_d.Rd | 3 --
man/t_to_d.Rd | 7 ++----
man/tt.ancova_to_d.Rd | 1
44 files changed, 223 insertions(+), 192 deletions(-)
Path: /cran/updated | permanent link
Title: Meta-Analysis with Correlations
Diff between MAc versions 1.0.5 dated 2010-03-01 and 1.0.6 dated 2010-03-13
More information about MAc at CRAN
Description: This is an integrated meta-analysis package for conducting
a research synthesis with correlational data. One of the unique
features of this package is in its integration of user-friendly
functions to complete the majority of statistical steps
involved in a meta-analysis with correlations. It uses
recommended procedures as described in The Handbook of Research
Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine,
2009).
Author: AC Del Re & William T. Hoyt
Maintainer: AC Del Re
DESCRIPTION | 17 -
R/MAc.R | 455 ++++++++++++++++++++++++++++++++++++++++----------
man/ComplData.Rd | 2
man/MAc-package.Rd | 25 +-
man/PubBias.Rd |only
man/ancova_to_d1.Rd |only
man/ancova_to_d2.Rd |only
man/d_to_g.Rd |only
man/f.ancova_to_d.Rd |only
man/f_to_d.Rd |only
man/fail_to_d.Rd |only
man/lor_to_d.Rd |only
man/mean_to_d.Rd |only
man/mean_to_d2.Rd |only
man/or_to_d.Rd |only
man/p.ancova_to_d1.Rd |only
man/p.ancova_to_d2.Rd |only
man/p_to_d1.Rd |only
man/p_to_d2.Rd |only
man/prop_to_d.Rd |only
man/prop_to_or.Rd |only
man/r_to_d.Rd |only
man/t_to_d.Rd |only
man/tt.ancova_to_d.Rd |only
24 files changed, 390 insertions(+), 109 deletions(-)
Path: /cran/updated | permanent link
Title: Algorithmic Experimental Design
Diff between AlgDesign versions 1.1-1 dated 2010-01-25 and 1.1-2 dated 2010-03-13
More information about AlgDesign at CRAN
Description: Algorithmic experimental designs. Calculates exact and
approximate theory experimental designs for D,A, and I
criteria. Very large designs may be created. Experimental
designs may be blocked or blocked designs created from a
candidate list, using several criteria. The blocking can be
done when whole and within plot factors interact.
Author: Bob Wheeler
Maintainer: Bob Wheeler
DESCRIPTION | 8 ++++----
inst/doc/AlgDesign.pdf |binary
2 files changed, 4 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Title: Beta Regression
Diff between betareg versions 2.1-2 dated 2009-12-14 and 2.2-0 dated 2010-03-12
More information about betareg at CRAN
Description: Beta regression for modeling beta-distributed dependent
variables, e.g., rates and proportions.
Author: Achim Zeileis [aut, cre], Francisco Cribari-Neto [ctb],
Alexandre B. Simas [ctb] (earlier version by), Andrea V. Rocha
[ctb] (earlier version by)
Maintainer: Achim Zeileis
DESCRIPTION | 10
NEWS | 18
R/betareg.R | 54 -
inst/doc/betareg.Rnw | 2166 ++++++++++++++++++++++++++-------------------------
inst/doc/betareg.bib | 58 +
inst/doc/betareg.pdf |binary
man/betareg.Rd | 6
man/plot.betareg.Rd | 30
8 files changed, 1279 insertions(+), 1063 deletions(-)
Path: /cran/updated | permanent link
Title: Processing and Simulating Genotype Data for Trio Logic
Regression
Diff between trio versions 1.0.14 dated 2010-03-08 and 1.0.15 dated 2010-03-12
More information about trio at CRAN
Description: Set up matched case-pseudo controls genotypes data for
trios in order to run trio logic regreesion, to impute missing
genotypes in trios, or to simulate case-parent trios with
disease risk dependent on SNP-SNP interaction. This package
furthermore contains functions for computing the values of
pairwise LD measures and for identifying LD blocks.
Author: Qing Li, Holger Schwender
Maintainer: Qing Li
DESCRIPTION | 8
NAMESPACE | 2
R/compPermTDT2way.R |only
R/tdt.R | 7
inst/doc/trio.pdf | 1207 ++++++++++++++++++++++++-------------------------
man/compPermTDT2way.Rd |only
6 files changed, 621 insertions(+), 603 deletions(-)
Path: /cran/updated | permanent link
Title: Teaching GUI - prototype
Diff between TGUITeaching versions 0.9.3 dated 2009-11-23 and 0.9.5 dated 2010-03-12
More information about TGUITeaching at CRAN
Description: Trainings-GUI
Author: Matthias Templ, Gerlinde Dinges, Alexander Kowarik, Bernhard
Meindl
Maintainer: Bernhard Meindl
TGUITeaching-0.9.3/TGUITeaching/R/exercise1.r |only
TGUITeaching-0.9.3/TGUITeaching/R/feedback.r |only
TGUITeaching-0.9.3/TGUITeaching/inst/etc/ProblemeUndBugs.txt |only
TGUITeaching-0.9.3/TGUITeaching/man/exercise1.Rd |only
TGUITeaching-0.9.5/TGUITeaching/DESCRIPTION | 10 +-
TGUITeaching-0.9.5/TGUITeaching/R/ex_animationMeanMedian.r |only
TGUITeaching-0.9.5/TGUITeaching/R/ex_boxplots.r |only
TGUITeaching-0.9.5/TGUITeaching/R/ex_clt.r |only
TGUITeaching-0.9.5/TGUITeaching/R/ex_dataCollection.r |only
TGUITeaching-0.9.5/TGUITeaching/R/ex_eda.r |only
TGUITeaching-0.9.5/TGUITeaching/R/ex_errors.r |only
TGUITeaching-0.9.5/TGUITeaching/R/ex_feedback.r |only
TGUITeaching-0.9.5/TGUITeaching/R/ex_interactivePlotBinom.r |only
TGUITeaching-0.9.5/TGUITeaching/R/ex_interactivePlotHistogram.r |only
TGUITeaching-0.9.5/TGUITeaching/R/ex_interactivePlotQQ.r |only
TGUITeaching-0.9.5/TGUITeaching/R/ex_praesident.r |only
TGUITeaching-0.9.5/TGUITeaching/R/ex_timeseries.r |only
TGUITeaching-0.9.5/TGUITeaching/R/zzz.R | 45 ++++------
TGUITeaching-0.9.5/TGUITeaching/inst/etc/contents.csv | 14 ++-
TGUITeaching-0.9.5/TGUITeaching/man/ex_praesident.Rd |only
20 files changed, 38 insertions(+), 31 deletions(-)
Path: /cran/updated | permanent link
Title: HTML exportation for R objects
Diff between R2HTML versions 1.59-1 dated 2009-03-29 and 2.0.0 dated 2010-03-12
More information about R2HTML at CRAN
Description: Includes HTML function and methods to write in an HTML
file. Thus, making HTML reports is easy. Includes a function
that allows redirection on the fly, which appears to be very
usefull for teaching purpose, as the student can keep a copy of
the produced output to keep all that he did during the course.
Package comes with a vignette describing how to write HTML
reports for statistical analysis. Finally, a driver for Sweave
allows to parse HTML flat files containing R code and to
automatically write the corresponding outputs (tables and
graphs).
Author: Eric Lecoutre
Maintainer: Eric Lecoutre
DESCRIPTION | 16
INDEX | 50 +-
R/HTMLcore.R | 936 ++++++++++++++++++++++++-------------------------
man/HTML.data.frame.Rd | 172 ++++-----
man/HTML.latex.Rd | 24 -
man/HTMLStart.Rd | 161 ++++----
man/R2HTML-internal.Rd | 4
man/RweaveHTML.Rd | 2
8 files changed, 681 insertions(+), 684 deletions(-)
Path: /cran/updated | permanent link
Title: Interactive exploratory spatial data analysis
Diff between GeoXp versions 1.4.2 dated 2010-03-10 and 1.4.3 dated 2010-03-12
More information about GeoXp at CRAN
Description: GeoXp is a tool for researchers in spatial statistics,
spatial econometrics, geography, ecology etc allowing to link
dynamically statistical plots with elementary maps. This
coupling consists in the fact that the selection of a zone on
the map results in the automatic highlighting of the
corresponding points on the statistical graph or reversely the
selection of a portion of the graph results in the automatic
highlighting of the corresponding points on the map. GeoXp
includes tools from different areas of spatial statistics
including geostatistics as well as spatial econometrics and
point processes. Besides elementary plots like boxplots,
histograms or simple scatterplos, GeoXp also couples with maps
Moran scatterplots, variogram cloud, Lorentz Curves,...In order
to make the most of the multidimensionality of the data, GeoXp
includes some dimension reduction techniques such as PCA.
Author: Yves Aragon, Thibault Laurent, Lauriane Robidou, Anne
Ruiz-Gazen, Christine Thomas-Agnan
Maintainer: Thibault Laurent
DESCRIPTION | 8 +-
inst/doc/presentation_geoxp.pdf | 125 ++++++++++++++++++++--------------------
man/GeoXp-package.Rd | 4 -
man/boxplotmap.Rd | 6 -
man/clustermap.Rd | 19 ------
man/ginimap.Rd | 2
6 files changed, 75 insertions(+), 89 deletions(-)
Path: /cran/updated | permanent link
Title: Deducer
Diff between Deducer versions 0.2-2 dated 2009-12-23 and 0.2-3 dated 2010-03-12
More information about Deducer at CRAN
Description: An intuitive, cross-platform graphical data analysis
system. It uses menus and dialogs to guide the user efficiently
through the data manipulation and analysis process, and has an
excel like spreadsheet for easy data frame visualization and
editing. Deducer works best when used with the Java based R GUI
JGR, but the dialogs can be called from the command line.
Dialogs have also been integrated into the Windows Rgui.
Author: Ian Fellows
Maintainer: Ian Fellows
DESCRIPTION | 12 ++---
NEWS | 3 -
R/Deducer.R | 46 ++++++++++++++++-----
R/devel.R |only
R/ggcorplot.R | 4 -
R/util.R | 9 ++--
inst/java/deducer.jar |binary
inst/javasrc/deducer/Deducer.java | 19 +++++++-
inst/javasrc/deducer/models/GLMModel.java | 7 ++-
inst/javasrc/deducer/toolkit/VariableSelector.java | 34 ++++++++++-----
inst/javasrc/deducer/widgets |only
man/devel.Rd |only
12 files changed, 97 insertions(+), 37 deletions(-)
Path: /cran/updated | permanent link
Title: OC Roll Call Analysis Software.
Diff between oc versions 0.04 dated 2008-09-03 and 0.07 dated 2010-03-11
More information about oc at CRAN
Description: Estimates Optimal Classification scores from roll call
votes supplied though a 'rollcall' object from package 'pscl'.
Author: Keith Poole
Maintainer: Jeffrey Lewis
oc-0.04/oc/inst/doc/Rplots.ps |only
oc-0.07/oc/DESCRIPTION | 25
oc-0.07/oc/inst/doc/Rplots.pdf |only
oc-0.07/oc/inst/doc/oc.pdf |binary
oc-0.07/oc/src/Makevars | 2
oc-0.07/oc/src/Makevars.win | 4
oc-0.07/oc/src/oc.f90 |11163 ++++++++++++++++++++---------------------
7 files changed, 5680 insertions(+), 5514 deletions(-)
Path: /cran/updated | permanent link
Title: Automating Mplus Model Estimation and Interpretation
Diff between MplusAutomation versions 0.2-1 dated 2010-03-10 and 0.2-2 dated 2010-03-11
More information about MplusAutomation at CRAN
Description: The MplusAutomation package leverages the flexibility of
the R language to automate latent variable model estimation and
interpretation using Mplus, a powerful latent variable modeling
program developed by Muthen and Muthen (www.statmodel.com).
Specifically, MplusAutomation provides routines for creating
related groups of models, running batches of models, and
extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist
Maintainer: Michael Hallquist
MplusAutomation-0.2-1/MplusAutomation/man/extractModelResults.Rd |only
MplusAutomation-0.2-1/MplusAutomation/man/parseModels.Rd |only
MplusAutomation-0.2-2/MplusAutomation/DESCRIPTION | 8
MplusAutomation-0.2-2/MplusAutomation/NAMESPACE | 2
MplusAutomation-0.2-2/MplusAutomation/R/parseOutput.R | 211 ++++++++--
MplusAutomation-0.2-2/MplusAutomation/man/MplusAutomation-package.Rd | 8
MplusAutomation-0.2-2/MplusAutomation/man/createTable.Rd | 11
MplusAutomation-0.2-2/MplusAutomation/man/extractModelParameters.Rd |only
MplusAutomation-0.2-2/MplusAutomation/man/extractModelSummaries.Rd |only
MplusAutomation-0.2-2/MplusAutomation/man/runModels_Interactive.Rd | 5
10 files changed, 195 insertions(+), 50 deletions(-)
Path: /cran/updated | permanent link
Title: Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Diff between memisc versions 0.95-23 dated 2009-11-12 and 0.95-26 dated 2010-03-11
More information about memisc at CRAN
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
Author: Martin Elff
Maintainer: Martin Elff
memisc-0.95-23/memisc/NEWS |only
memisc-0.95-26/memisc/DESCRIPTION | 10 -
memisc-0.95-26/memisc/R/cases.R | 16 +-
memisc-0.95-26/memisc/R/dataset-methods.R | 8 -
memisc-0.95-26/memisc/R/mtable.R | 216 +++++++++++++-----------------
memisc-0.95-26/memisc/R/percent.R | 3
memisc-0.95-26/memisc/R/tolatex-ftable.R | 6
memisc-0.95-26/memisc/R/tolatex-matrix.R | 56 ++++++-
memisc-0.95-26/memisc/inst/NEWS | 21 ++
memisc-0.95-26/memisc/inst/doc/anes48.Rnw | 2
memisc-0.95-26/memisc/inst/doc/anes48.pdf |binary
memisc-0.95-26/memisc/man/toLatexExtra.Rd | 19 ++
12 files changed, 203 insertions(+), 154 deletions(-)
Path: /cran/updated | permanent link
Title: Graphics for Spherical Distributions and Earthquake Focal
Mechanisms
Diff between RFOC versions 1.0-6 dated 2009-10-15 and 1.0-9 dated 2010-03-11
More information about RFOC at CRAN
Description: Graphics for statistics on a sphere, as applied to
geological fault data, crystalogaphy, earthquake focal
mechanisms, radiation patterns, ternary plots and
geographical/geological maps.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 10 +++++-----
R/PlotPTsmooth.R | 8 ++++----
R/StrikeDip.R |only
R/antipolygon.R | 28 ++++++++++++++++++++++++----
R/getCMT.R |only
R/getUWfocs.R |only
R/getjul.R |only
R/plotmanyfoc.R |only
R/prepFOCS.R |only
R/spherefocgeo.R |only
R/ternfocgeo.R |only
R/tojul.R |only
inst/doc/focalmec.Rnw | 4 ++++
inst/doc/focalmec.pdf |binary
man/RFOC-package.Rd | 11 ++++++++---
man/StrikeDip.Rd |only
man/Wpoint.Rd | 2 +-
man/antipolygon.Rd | 25 +++++++++++++++++--------
man/getCMT.Rd |only
man/getUWfocs.Rd |only
man/getjul.Rd |only
man/plotmanyfoc.Rd |only
man/prepFOCS.Rd |only
man/spherefocgeo.Rd |only
man/ternfocgeo.Rd |only
man/tojul.Rd |only
26 files changed, 63 insertions(+), 25 deletions(-)
Path: /cran/updated | permanent link
Title: Tools to analyse RFLP data
Diff between RFLPtools versions 1.0 dated 2010-02-10 and 1.1 dated 2010-03-11
More information about RFLPtools at CRAN
Description: RFLPtools provides functions to analyse DNA fragment
samples (i.e. derived from RFLP-analysis) and standalone BLAST
report files (i.e. DNA sequence analysis).
Author: Fabienne Flessa, Alexandra Kehl, Matthias Kohl
Maintainer: Matthias Kohl
DESCRIPTION | 8 ++++----
NEWS |only
R/Gendist.R |only
R/read.blast.R | 4 ++++
R/simMatrix.R | 6 ++++++
inst/CITATION | 12 ++++++------
inst/doc/RFLPtools.Rnw | 33 ++++++++++++++++++++++-----------
inst/doc/RFLPtools.pdf |binary
man/0RFLP-package.Rd | 12 ++++++++++--
man/sim2dist.Rd | 21 ++++++++++-----------
man/simMatrix.Rd | 8 +++++---
11 files changed, 67 insertions(+), 37 deletions(-)
Path: /cran/updated | permanent link
Title: Miscellaneous Functions from M. Kohl
Diff between MKmisc versions 0.5 dated 2010-02-10 and 0.6.1 dated 2010-03-11
More information about MKmisc at CRAN
Description: Miscellaneous Functions from M. Kohl
Author: Matthias Kohl
Maintainer: Matthias Kohl
DESCRIPTION | 10 +++++-----
R/pairwiselogFC.R |only
inst/CITATION | 12 ++++++++++--
man/MKmisc-package.Rd | 6 +++---
man/corDist.Rd | 1 -
man/corPlot.Rd | 3 +--
man/madPlot.Rd | 4 ++--
man/pairwiseFC.Rd | 10 +++++-----
man/pairwiselogFC.Rd |only
9 files changed, 26 insertions(+), 20 deletions(-)
Path: /cran/updated | permanent link
Title: Synthesizing List of Differentially Expressed Features
Diff between sdef versions 1.4 dated 2010-03-02 and 1.5 dated 2010-03-11
More information about sdef at CRAN
Description: The package performs two tests to evaluate if the
experiments are associated and returns a list of interesting
features common to all the experiments.
Author: Alberto Cassese, Marta Blangiardo
Maintainer: Alberto Cassese
sdef-1.4/sdef/R/sdef-internal.R |only
sdef-1.5/sdef/DESCRIPTION | 8 ++++----
sdef-1.5/sdef/R/extractFeatures.R.R | 12 ++++++------
sdef-1.5/sdef/data/Example3Lists.rda |binary
sdef-1.5/sdef/data/Liver.Muscle.rda |binary
sdef-1.5/sdef/man/Example3Lists.Rd | 4 ++--
sdef-1.5/sdef/man/Liver.Muscle.Rd | 4 ++--
sdef-1.5/sdef/man/Tmc.Rd | 2 +-
sdef-1.5/sdef/man/baymod.Rd | 2 +-
sdef-1.5/sdef/man/createTable.Rd | 2 +-
sdef-1.5/sdef/man/extractFeatures.R.Rd | 2 +-
sdef-1.5/sdef/man/extractFeatures.T.Rd | 2 +-
sdef-1.5/sdef/man/ratio.Rd | 2 +-
sdef-1.5/sdef/man/sdef-package.Rd | 4 ++--
sdef-1.5/sdef/man/simulation.Rd | 2 +-
sdef-1.5/sdef/man/simulation.indep.Rd | 2 +-
16 files changed, 24 insertions(+), 24 deletions(-)
Path: /cran/updated | permanent link
Title: Functions to draw population pyramid
Diff between pyramid versions 1.1 dated 2010-01-06 and 1.2 dated 2010-03-11
More information about pyramid at CRAN
Description: Drawing population pyramid using (1) data.frame or (2)
vectors. The former is named as pyramid() and the latter
pyramids(), as lapper function of pyramid().
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
DESCRIPTION | 8 ++++----
R/pyramid.R | 15 +++++++++++----
man/pyramid.Rd | 10 ++++++++--
3 files changed, 23 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Title: Weighted Logrank Tests and NPMLE for interval censored data
Diff between interval versions 0.9-9.5 dated 2010-02-03 and 0.9-9.6 dated 2010-03-11
More information about interval at CRAN
Description: Functions to fit nonparametric survival curves, plot them,
and perform logrank or Wilcoxon type tests.
Author: Michael P. Fay
Maintainer: Michael P. Fay
DESCRIPTION | 8
NEWS | 6
R/SurvLR.R | 7
R/icfit.R | 2
inst/doc/Rplots.pdf | 4
inst/doc/intervalPaper.pdf | 1275 ++++++++++++++++++++++-----------------------
6 files changed, 657 insertions(+), 645 deletions(-)
Path: /cran/updated | permanent link
Title: Hierarchical Exponential-Family Random Graph Models
Diff between hergm versions 1.0 dated 2010-02-21 and 1.1 dated 2010-03-11
More information about hergm at CRAN
Description: The R package 'hergm' implements Hierarchical
Exponential-Family Random Graph Models (HERGMs), which can be
used to model a wide range of relational data (networks).
'hergm' implements both simulation and Bayesian inference.
Author: Michael Schweinberger
Maintainer: Michael Schweinberger
hergm-1.0/hergm/R/hergm.dimension.R |only
hergm-1.0/hergm/R/hergm.p.R |only
hergm-1.0/hergm/hergm.pdf |only
hergm-1.1/hergm/DESCRIPTION | 9
hergm-1.1/hergm/R/hergm.mcmc.R | 19 +
hergm-1.1/hergm/R/hergm.misc.R |only
hergm-1.1/hergm/R/hergm.postprocess.R | 85 ++++---
hergm-1.1/hergm/R/hergm.preprocess.R | 32 ++
hergm-1.1/hergm/R/hergm.set.mcmc.R | 4
hergm-1.1/hergm/R/hergm.wrapper.R | 3
hergm-1.1/hergm/R_init_hergm.R |only
hergm-1.1/hergm/demo/example.r | 37 ++-
hergm-1.1/hergm/man/hergm-internal.Rd | 7
hergm-1.1/hergm/man/hergm.postprocess.Rd | 18 -
hergm-1.1/hergm/man/hergm.terms.Rd | 28 +-
hergm-1.1/hergm/src/MCMC.c | 8
hergm-1.1/hergm/src/edgetree.c | 5
hergm-1.1/hergm/src/h_ergm.c | 348 ++++++++++++-------------------
hergm-1.1/hergm/src/h_ergm.h | 42 +--
hergm-1.1/hergm/src/h_ergm_initialize.c |only
hergm-1.1/hergm/src/h_ergm_interface.c | 8
hergm-1.1/hergm/src/h_ergm_utils.c | 12 -
22 files changed, 332 insertions(+), 333 deletions(-)
Path: /cran/updated | permanent link
Title: Sampling designs and parameter estimation in finite population
Diff between TeachingSampling versions 1.1.9 dated 2010-01-18 and 1.4.9 dated 2010-03-11
More information about TeachingSampling at CRAN
Description: Foundations of inference in survey sampling
Author: Hugo Andres Gutierrez Rojas
Maintainer: Hugo Andres Gutierrez Rojas
TeachingSampling-1.1.9/TeachingSampling/man/OrderWR.r.rd |only
TeachingSampling-1.4.9/TeachingSampling/DESCRIPTION | 8 +--
TeachingSampling-1.4.9/TeachingSampling/R/Deltakl.r |only
TeachingSampling-1.4.9/TeachingSampling/R/Pikl.r |only
TeachingSampling-1.4.9/TeachingSampling/R/Support.r | 2
TeachingSampling-1.4.9/TeachingSampling/R/SupportWR.r |only
TeachingSampling-1.4.9/TeachingSampling/R/VarHT.r |only
TeachingSampling-1.4.9/TeachingSampling/man/DataFr.rd | 35 +++++++++------
TeachingSampling-1.4.9/TeachingSampling/man/Deltakl.rd |only
TeachingSampling-1.4.9/TeachingSampling/man/HH.rd | 3 -
TeachingSampling-1.4.9/TeachingSampling/man/OrderWR.rd |only
TeachingSampling-1.4.9/TeachingSampling/man/Pikl.rd |only
TeachingSampling-1.4.9/TeachingSampling/man/S.piPS.rd | 2
TeachingSampling-1.4.9/TeachingSampling/man/SupportWR.rd |only
TeachingSampling-1.4.9/TeachingSampling/man/TbLatex.rd | 33 +++++++++-----
TeachingSampling-1.4.9/TeachingSampling/man/VarHT.rd |only
16 files changed, 53 insertions(+), 30 deletions(-)
Path: /cran/updated | permanent link
Title: Univariate outlier detection
Diff between extremevalues versions 1.0 dated 2009-12-03 and 2.0 dated 2010-03-10
More information about extremevalues at CRAN
Description: Detect extreme values in onedimensional data
Author: Mark van der Loo
Maintainer: Mark van der Loo
extremevalues-1.0/extremevalues/CITATION |only
extremevalues-1.0/extremevalues/R/zzz.r |only
extremevalues-2.0/extremevalues/DESCRIPTION | 10 -
extremevalues-2.0/extremevalues/NAMESPACE | 9 +
extremevalues-2.0/extremevalues/R/fitExponential.r | 5
extremevalues-2.0/extremevalues/R/getExponentialLimit.r | 12 +
extremevalues-2.0/extremevalues/R/getLognormalLimit.r | 10 +
extremevalues-2.0/extremevalues/R/getLplusLmin.r |only
extremevalues-2.0/extremevalues/R/getNormalLimit.r | 7 -
extremevalues-2.0/extremevalues/R/getOutliers.r | 46 +------
extremevalues-2.0/extremevalues/R/getOutliersI.r |only
extremevalues-2.0/extremevalues/R/getOutliersII.r |only
extremevalues-2.0/extremevalues/R/getParetoLimit.r | 8 +
extremevalues-2.0/extremevalues/R/getWeibullLimit.r | 7 -
extremevalues-2.0/extremevalues/R/outlierPlot.r | 53 +-------
extremevalues-2.0/extremevalues/R/plotMethodII.r |only
extremevalues-2.0/extremevalues/R/qqExponentialLimit.r |only
extremevalues-2.0/extremevalues/R/qqFitPlot.r |only
extremevalues-2.0/extremevalues/R/qqLognormalLimit.r |only
extremevalues-2.0/extremevalues/R/qqNormalLimit.r |only
extremevalues-2.0/extremevalues/R/qqParetoLimit.r |only
extremevalues-2.0/extremevalues/R/qqWeibullLimit.r |only
extremevalues-2.0/extremevalues/inst/CITATION |only
extremevalues-2.0/extremevalues/inst/doc/extremevalues.pdf |binary
extremevalues-2.0/extremevalues/listOfChanges.txt |only
extremevalues-2.0/extremevalues/man/extremevalues.Rd |only
extremevalues-2.0/extremevalues/man/fitFunctions.Rd | 15 +-
extremevalues-2.0/extremevalues/man/getLimit.Rd | 24 ++-
extremevalues-2.0/extremevalues/man/getOutliers.Rd | 83 +++++++------
extremevalues-2.0/extremevalues/man/getQQLimit.Rd |only
extremevalues-2.0/extremevalues/man/outlierPlot.Rd | 45 ++++---
31 files changed, 177 insertions(+), 157 deletions(-)
Path: /cran/updated | permanent link
Title: SQLite interface for R
Diff between RSQLite versions 0.8-3 dated 2010-02-11 and 0.8-4 dated 2010-03-10
More information about RSQLite at CRAN
Description: Database Interface R driver for SQLite. This package
embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the
SQLite engine (version 3.6.22) is included.
Author: David A. James
Maintainer: Seth Falcon
RSQLite-0.8-3/RSQLite/a.out.dSYM |only
RSQLite-0.8-4/RSQLite/DESCRIPTION | 10
RSQLite-0.8-4/RSQLite/R/SQLite.R | 2
RSQLite-0.8-4/RSQLite/R/SQLiteSupport.R | 4
RSQLite-0.8-4/RSQLite/R/zzz.R | 6
RSQLite-0.8-4/RSQLite/TAGS |only
RSQLite-0.8-4/RSQLite/configure | 2
RSQLite-0.8-4/RSQLite/configure.in | 2
RSQLite-0.8-4/RSQLite/inst/NEWS | 34
RSQLite-0.8-4/RSQLite/inst/UnitTests/bind_data_test.R | 91
RSQLite-0.8-4/RSQLite/inst/UnitTests/dbConnect_test.R | 2
RSQLite-0.8-4/RSQLite/inst/UnitTests/dbGetInfo_test.R | 2
RSQLite-0.8-4/RSQLite/man/dbSendQuery-methods.Rd | 63
RSQLite-0.8-4/RSQLite/src/Makevars.win | 3
RSQLite-0.8-4/RSQLite/src/RS-SQLite.c | 2190 ++---
RSQLite-0.8-4/RSQLite/src/RS-SQLite.h | 11
RSQLite-0.8-4/RSQLite/src/param_binding.c |only
RSQLite-0.8-4/RSQLite/src/param_binding.h |only
RSQLite-0.8-4/RSQLite/src/sqlite.h |only
RSQLite-0.8-4/RSQLite/src/sqlite/sqlite3.c | 7038 ++++++++++--------
RSQLite-0.8-4/RSQLite/src/sqlite/sqlite3.h | 2871 +++----
21 files changed, 6629 insertions(+), 5702 deletions(-)
Path: /cran/updated | permanent link
Title: Interactive exploratory spatial data analysis
Diff between GeoXp versions 1.4.1 dated 2010-03-10 and 1.4.2 dated 2010-03-10
More information about GeoXp at CRAN
Description: GeoXp is a tool for researchers in spatial statistics,
spatial econometrics, geography, ecology etc allowing to link
dynamically statistical plots with elementary maps. This
coupling consists in the fact that the selection of a zone on
the map results in the automatic highlighting of the
corresponding points on the statistical graph or reversely the
selection of a portion of the graph results in the automatic
highlighting of the corresponding points on the map. GeoXp
includes tools from different areas of spatial statistics
including geostatistics as well as spatial econometrics and
point processes. Besides elementary plots like boxplots,
histograms or simple scatterplos, GeoXp also couples with maps
Moran scatterplots, variogram cloud, Lorentz Curves,...In order
to make the most of the multidimensionality of the data, GeoXp
includes some dimension reduction techniques such as PCA.
Author: Yves Aragon, Thibault Laurent, Lauriane Robidou, Anne
Ruiz-Gazen, Christine Thomas-Agnan
Maintainer: Thibault Laurent
DESCRIPTION | 8 +-
inst/doc/presentation_geoxp.pdf | 110 ++++++++++++++++++++--------------------
man/GeoXp-package.Rd | 4 -
man/angleplotmap.Rd | 2
man/barmap.Rd | 2
man/boxplotmap.Rd | 2
man/dbledensitymap.Rd | 2
man/densitymap.Rd | 4 -
man/driftmap.Rd | 4 -
man/histobarmap.Rd | 2
man/histomap.Rd | 2
man/polyboxplotmap.Rd | 2
12 files changed, 72 insertions(+), 72 deletions(-)
Path: /cran/updated | permanent link
Title: Topic models
Diff between topicmodels versions 0.0-3 dated 2009-11-06 and 0.0-4 dated 2010-03-10
More information about topicmodels at CRAN
Description: Provides an interface to the C code for Latent Dirichlet
Allocation (LDA) models and Correlated Topics Models (CTM) by
David M. Blei and the C++ code for fitting LDA models using
Gibbs sampling by Xuan-Hieu Phan.
Author: Bettina Gruen and Kurt Hornik
Maintainer: Bettina Gruen
DESCRIPTION | 10 +++++-----
NEWS |only
R/allclasses.R | 7 ++++---
R/ctm.R | 2 +-
R/lda.R | 2 +-
R/utils.R | 4 ++--
inst/NEWS |only
inst/doc/topicmodels.Rnw | 4 ++--
inst/doc/topicmodels.pdf |binary
man/associatedpress.Rd | 4 ++--
man/build_graph.Rd | 10 +++++-----
man/ctm.Rd | 7 ++++---
man/lda.Rd | 17 ++++++++++-------
man/tmcontrol-class.Rd | 2 +-
14 files changed, 37 insertions(+), 32 deletions(-)
Path: /cran/updated | permanent link
Title: Efficient Estimation of Covariance and (Partial) Correlation
Diff between corpcor versions 1.5.5 dated 2010-01-14 and 1.5.6 dated 2010-03-10
More information about corpcor at CRAN
Description: This package implements a James-Stein-type shrinkage
estimator for the covariance matrix, with separate shrinkage
for variances and correlations. The details of the method are
explained in Sch\"afer and Strimmer (2005) and Opgen-Rhein and
Strimmer (2007). The approach is both computationally as well
as statistically very efficient, it is applicable to "small n,
large p" data, and always returns a positive definite and
well-conditioned covariance matrix. In addition to inferring
the covariance matrix the package also provides shrinkage
estimators for partial correlations, partial variances, and
regression coefficients. The inverse of the covariance and
correlation matrix can be efficiently computed, and as well as
any arbitrary power of the shrinkage correlation matrix.
Furthermore, functions are available for fast singular value
decomposition, for computing the pseudoinverse, and for
checking the rank and positive definiteness of a matrix.
Author: Juliane Schaefer, Rainer Opgen-Rhein, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
DESCRIPTION | 8 ++++----
NEWS | 27 ++++-----------------------
R/pvt.get.lambda.R | 18 +++++++++++-------
3 files changed, 19 insertions(+), 34 deletions(-)
Path: /cran/updated | permanent link
Title: analysis of complex survey samples
Diff between survey versions 3.20 dated 2010-02-09 and 3.21 dated 2010-03-10
More information about survey at CRAN
Description: Summary statistics, generalised linear models, cumulative
link models, Cox models, loglinear models, and general maximum
pseudolikelihood estimation for multistage stratified,
cluster-sampled, unequally weighted survey samples. Variances
by Taylor series linearisation or replicate weights.
Post-stratification, calibration, and raking. Two-phase
subsampling designs. Graphics. Predictive margins by direct
standardization. PPS sampling without replacement. Principal
components, factor analysis.
Author: Thomas Lumley
Maintainer: Thomas Lumley
DESCRIPTION | 6 +--
INDEX | 6 +--
NAMESPACE | 4 +-
R/grake.R | 86 ++++++++++++++++++++++++++++++++++++++++++++++++++--
R/survey.R | 2 -
data/api.rda |binary
inst/CITATION | 4 +-
inst/NEWS | 8 ++++
inst/doc/domain.pdf |binary
inst/doc/epi.pdf |binary
inst/doc/phase1.pdf |binary
inst/doc/pps.pdf |binary
inst/doc/survey.pdf |binary
man/api.Rd | 3 +
man/calibrate.Rd | 51 +++++++++++++++++++++---------
man/svyby.Rd | 2 -
man/svyquantile.Rd | 2 -
man/trimWeights.Rd |only
18 files changed, 142 insertions(+), 32 deletions(-)
Path: /cran/updated | permanent link
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Diff between spatstat versions 1.17-6 dated 2010-02-09 and 1.18-0 dated 2010-03-10
More information about spatstat at CRAN
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Also
supports three-dimensional point patterns. Contains functions
for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, pixel images and
tessellations. Point process models can be fitted to point
pattern data. Cluster type models are fitted by the method of
minimum contrast. Very general Gibbs point process models can
be fitted to point pattern data using a function ppm similar to
lm or glm. Models may include dependence on covariates,
interpoint interaction and dependence on marks. Fitted models
can be simulated automatically. Also provides facilities for
formal inference (such as chi-squared tests) and model
diagnostics (including simulation envelopes, residuals,
residual plots and Q-Q plots).
Author: Adrian Baddeley
Maintainer: Adrian Baddeley
spatstat-1.17-6/spatstat/INDEX |only
spatstat-1.17-6/spatstat/man/setmarks.Rd |only
spatstat-1.18-0/spatstat/DESCRIPTION | 8
spatstat-1.18-0/spatstat/NEWS | 56
spatstat-1.18-0/spatstat/R/Gmulti.S | 4
spatstat-1.18-0/spatstat/R/Kmulti.S | 14
spatstat-1.18-0/spatstat/R/Kmulti.inhom.R | 14
spatstat-1.18-0/spatstat/R/alltypes.R | 4
spatstat-1.18-0/spatstat/R/applynbd.R | 4
spatstat-1.18-0/spatstat/R/areadiff.R | 2
spatstat-1.18-0/spatstat/R/by.ppp.R | 2
spatstat-1.18-0/spatstat/R/clip.psp.R | 4
spatstat-1.18-0/spatstat/R/cut.ppp.R | 10
spatstat-1.18-0/spatstat/R/density.ppp.R | 4
spatstat-1.18-0/spatstat/R/diagnoseppm.R | 2
spatstat-1.18-0/spatstat/R/distan3D.R | 2
spatstat-1.18-0/spatstat/R/envelope.R | 21
spatstat-1.18-0/spatstat/R/images.R | 14
spatstat-1.18-0/spatstat/R/iplot.R | 4
spatstat-1.18-0/spatstat/R/kppm.R | 2
spatstat-1.18-0/spatstat/R/kstest.R | 136 +
spatstat-1.18-0/spatstat/R/markcorr.R | 8
spatstat-1.18-0/spatstat/R/marks.R | 49
spatstat-1.18-0/spatstat/R/marktable.R | 4
spatstat-1.18-0/spatstat/R/morphology.R | 6
spatstat-1.18-0/spatstat/R/nearestsegment.R | 2
spatstat-1.18-0/spatstat/R/nnclean.R | 27
spatstat-1.18-0/spatstat/R/nncorr.R | 14
spatstat-1.18-0/spatstat/R/pcfmulti.inhom.R | 8
spatstat-1.18-0/spatstat/R/plot.ppp.S | 31
spatstat-1.18-0/spatstat/R/ppp.S | 31
spatstat-1.18-0/spatstat/R/psp2pix.R |only
spatstat-1.18-0/spatstat/R/quadratcount.R | 2
spatstat-1.18-0/spatstat/R/quadrattest.R | 4
spatstat-1.18-0/spatstat/R/quadscheme.S | 8
spatstat-1.18-0/spatstat/R/randommk.R | 2
spatstat-1.18-0/spatstat/R/randomonlines.R | 25
spatstat-1.18-0/spatstat/R/rlabel.R | 15
spatstat-1.18-0/spatstat/R/rmh.default.R | 2
spatstat-1.18-0/spatstat/R/split.ppp.R | 52
spatstat-1.18-0/spatstat/R/summary.ppm.R | 2
spatstat-1.18-0/spatstat/R/tess.R | 2
spatstat-1.18-0/spatstat/R/unique.ppp.R | 4
spatstat-1.18-0/spatstat/R/util.S | 20
spatstat-1.18-0/spatstat/R/window.S | 14
spatstat-1.18-0/spatstat/R/wingeom.S | 68
spatstat-1.18-0/spatstat/data/anemones.rda |binary
spatstat-1.18-0/spatstat/data/ants.rda |binary
spatstat-1.18-0/spatstat/data/bei.rda |binary
spatstat-1.18-0/spatstat/data/chorley.rda |binary
spatstat-1.18-0/spatstat/data/finpines.rda |binary
spatstat-1.18-0/spatstat/data/heather.rda |binary
spatstat-1.18-0/spatstat/data/murchison.rda |binary
spatstat-1.18-0/spatstat/data/nbfires.rda |binary
spatstat-1.18-0/spatstat/data/nztrees.rda |binary
spatstat-1.18-0/spatstat/data/ponderosa.rda |binary
spatstat-1.18-0/spatstat/data/shapley.rda |binary
spatstat-1.18-0/spatstat/data/urkiola.rda |binary
spatstat-1.18-0/spatstat/demo/data.R | 17
spatstat-1.18-0/spatstat/inst/doc/shapefiles.pdf | 1787 +++++++++++------------
spatstat-1.18-0/spatstat/man/as.data.frame.im.Rd |only
spatstat-1.18-0/spatstat/man/as.mask.psp.Rd |only
spatstat-1.18-0/spatstat/man/envelope.Rd | 21
spatstat-1.18-0/spatstat/man/finpines.Rd | 19
spatstat-1.18-0/spatstat/man/internal.Rd | 22
spatstat-1.18-0/spatstat/man/kstest.Rd | 32
spatstat-1.18-0/spatstat/man/marks.Rd |only
spatstat-1.18-0/spatstat/man/nbfires.Rd | 399 ++---
spatstat-1.18-0/spatstat/man/nnclean.Rd | 47
spatstat-1.18-0/spatstat/man/pixellate.Rd | 12
spatstat-1.18-0/spatstat/man/pixellate.psp.Rd |only
spatstat-1.18-0/spatstat/man/plot.ppp.Rd | 12
spatstat-1.18-0/spatstat/man/ppp.Rd | 28
spatstat-1.18-0/spatstat/man/ppp.object.Rd | 4
spatstat-1.18-0/spatstat/man/rlabel.Rd | 2
spatstat-1.18-0/spatstat/man/shapley.Rd | 16
spatstat-1.18-0/spatstat/man/spatstat-package.Rd | 10
spatstat-1.18-0/spatstat/man/split.ppp.Rd | 30
spatstat-1.18-0/spatstat/src/seg2pix.c |only
79 files changed, 1758 insertions(+), 1407 deletions(-)
Path: /cran/updated | permanent link
Title: Simulation of ecological (and other) dynamic systems
Diff between simecol versions 0.6-9 dated 2009-09-04 and 0.6-10 dated 2010-03-10
More information about simecol at CRAN
Description: simecol is an object oriented framework to simulate
ecological (and other) dynamic systems. It can be used for
differential equations, individual-based (or agent-based) and
other models as well. The package helps to organize scenarios
(avoids copy and paste) and improves readability and usability
of code.
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt
simecol-0.6-10/simecol/DESCRIPTION | 12 +--
simecol-0.6-10/simecol/R/iteration.R | 14 ++--
simecol-0.6-10/simecol/demo/jss.R | 4 -
simecol-0.6-10/simecol/inst/FAQ.txt | 1
simecol-0.6-10/simecol/inst/NEWS | 42 +++----------
simecol-0.6-10/simecol/inst/doc/a-simecol-introduction.R |only
simecol-0.6-10/simecol/inst/doc/a-simecol-introduction.Rnw |only
simecol-0.6-10/simecol/inst/doc/a-simecol-introduction.pdf |only
simecol-0.6-10/simecol/inst/doc/b-simecol-howtos.R |only
simecol-0.6-10/simecol/inst/doc/b-simecol-howtos.Rnw |only
simecol-0.6-10/simecol/inst/doc/b-simecol-howtos.pdf |only
simecol-0.6-10/simecol/inst/doc/examples |only
simecol-0.6-10/simecol/inst/doc/index.html | 6 -
simecol-0.6-10/simecol/inst/doc/simecol.bib | 22 ++++++
simecol-0.6-10/simecol/man/diffusion.Rd | 2
simecol-0.6-10/simecol/man/fitOdeModel.Rd | 11 +++
simecol-0.6-10/simecol/man/fixParms.Rd | 7 +-
simecol-0.6-10/simecol/man/initialize-methods.Rd | 2
simecol-0.6-10/simecol/man/iteration.Rd | 4 -
simecol-0.6-10/simecol/man/observer.Rd |only
simecol-0.6-10/simecol/man/parms.Rd | 20 ++----
simecol-0.6-10/simecol/man/sim.Rd | 7 +-
simecol-0.6-10/simecol/man/simecol-package.Rd | 2
simecol-0.6-9/simecol/inst/doc/simecol-howtos.Rnw |only
simecol-0.6-9/simecol/inst/doc/simecol-howtos.pdf |only
simecol-0.6-9/simecol/inst/doc/simecol-introduction.Rnw |only
simecol-0.6-9/simecol/inst/doc/simecol-introduction.pdf |only
simecol-0.6-9/simecol/inst/examples |only
28 files changed, 86 insertions(+), 70 deletions(-)
Path: /cran/updated | permanent link
Title: Model-Based Boosting
Diff between mboost versions 2.0-2 dated 2010-03-05 and 2.0-3 dated 2010-03-10
More information about mboost at CRAN
Description: Functional gradient descent algorithm (boosting) for
optimizing general risk functions utilizing component-wise
(penalised) least squares estimates or regression trees as
base-learners for fitting generalized linear, additive and
interaction models to potentially high-dimensional data.
Author: Torsten Hothorn, Peter Buehlmann, Thomas Kneib, Matthias Schmid
and Benjamin Hofner
Maintainer: Torsten Hothorn
DESCRIPTION | 8
NEWS | 25 +
R/bl.R | 65 ++-
R/mboost.R | 44 +-
R/methods.R | 85 +++-
R/plot.R | 80 ++-
inst/CHANGES | 25 +
inst/doc/SurvivalEnsembles.pdf |binary
inst/doc/mboost_illustrations.pdf |binary
man/Family.Rd | 4
man/baselearners.Rd | 710 ++++++++++++++++++-----------------
man/control.Rd | 4
man/glmboost.Rd | 16
man/mboost_package.Rd | 4
man/methods.Rd | 41 +-
tests/Examples/mboost-Ex.Rout.save | 190 +++++++--
tests/bugfixes.R | 58 ++
tests/bugfixes.Rout.save | 61 ++-
tests/mboost_illustrations.Rout.save | 31 -
tests/regtest-glmboost.R | 24 -
tests/regtest-glmboost.Rout.save | 31 -
21 files changed, 965 insertions(+), 541 deletions(-)
Path: /cran/updated | permanent link
Title: Iterative Bias Reduction
Diff between ibr versions 1.2 dated 2009-11-16 and 1.2.1 dated 2010-03-10
More information about ibr at CRAN
Description: an R package for multivariate smoothing
Author: Pierre-Andre Cornillon, Nicolas Hengartner, Eric Matzner-Lober
Maintainer: Pierre-Andre Cornillon
DESCRIPTION | 8 +++----
R/forward.R | 65 ++++++++++++++++++++++++++++-----------------------------
R/ibr.R | 4 +--
R/plot.ibr.R | 2 -
man/forward.Rd | 9 ++++++-
5 files changed, 46 insertions(+), 42 deletions(-)
Path: /cran/updated | permanent link
Title: Interactive exploratory spatial data analysis
Diff between GeoXp versions 1.4 dated 2009-11-05 and 1.4.1 dated 2010-03-10
More information about GeoXp at CRAN
Description: GeoXp is a tool for researchers in spatial statistics,
spatial econometrics, geography, ecology etc allowing to link
dynamically statistical plots with elementary maps. This
coupling consists in the fact that the selection of a zone on
the map results in the automatic highlighting of the
corresponding points on the statistical graph or reversely the
selection of a portion of the graph results in the automatic
highlighting of the corresponding points on the map. GeoXp
includes tools from different areas of spatial statistics
including geostatistics as well as spatial econometrics and
point processes. Besides elementary plots like boxplots,
histograms or simple scatterplos, GeoXp also couples with maps
Moran scatterplots, variogram cloud, Lorentz Curves,...In order
to make the most of the multidimensionality of the data, GeoXp
includes some dimension reduction techniques such as PCA.
Author: Yves Aragon, Thibault Laurent, Lauriane Robidou, Anne
Ruiz-Gazen, Christine Thomas-Agnan
Maintainer: Thibault Laurent
DESCRIPTION | 6
inst/doc/presentation_geoxp.pdf | 2938 +++++++++++++++++++---------------------
man/barmap.Rd | 5
man/dbledensitymap.Rd | 4
man/dblehistomap.Rd | 4
man/histobarmap.Rd | 5
6 files changed, 1463 insertions(+), 1499 deletions(-)
Path: /cran/updated | permanent link
Title: Ishwaran and Kogalur's Random Survival Forest
Diff between randomSurvivalForest versions 3.6.1 dated 2010-01-27 and 3.6.2 dated 2010-03-09
More information about randomSurvivalForest at CRAN
Description: Ensemble survival analysis based on a random forest of
trees using random inputs.
Author: Hemant Ishwaran
Maintainer: Udaya B. Kogalur
randomSurvivalForest-3.6.1/randomSurvivalForest/CITATION |only
randomSurvivalForest-3.6.2/randomSurvivalForest/DESCRIPTION | 10
randomSurvivalForest-3.6.2/randomSurvivalForest/R/competing.risk.R | 53
randomSurvivalForest-3.6.2/randomSurvivalForest/R/extract.factor.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/find.interaction.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/impute.rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/max.subtree.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/plot.ensemble.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/plot.error.R | 14
randomSurvivalForest-3.6.2/randomSurvivalForest/R/plot.proximity.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/plot.rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/plot.variable.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/pmml2rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/predict.rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/print.rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/randomSurvivalForest.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf.default.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf.formula.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf.news.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf2pmml.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/rsf2rfz.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/varSel.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/vimp.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/R/zzz.R | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/inst/CITATION |only
randomSurvivalForest-3.6.2/randomSurvivalForest/inst/NEWS | 26
randomSurvivalForest-3.6.2/randomSurvivalForest/man/competing.risk.Rd | 19
randomSurvivalForest-3.6.2/randomSurvivalForest/man/find.interaction.Rd | 26
randomSurvivalForest-3.6.2/randomSurvivalForest/man/impute.Rd | 20
randomSurvivalForest-3.6.2/randomSurvivalForest/man/max.subtree.Rd | 11
randomSurvivalForest-3.6.2/randomSurvivalForest/man/plot.ensemble.Rd | 13
randomSurvivalForest-3.6.2/randomSurvivalForest/man/plot.error.Rd | 11
randomSurvivalForest-3.6.2/randomSurvivalForest/man/plot.proximity.Rd | 7
randomSurvivalForest-3.6.2/randomSurvivalForest/man/plot.variable.Rd | 25
randomSurvivalForest-3.6.2/randomSurvivalForest/man/predict.rsf.Rd | 33
randomSurvivalForest-3.6.2/randomSurvivalForest/man/print.rsf.Rd | 7
randomSurvivalForest-3.6.2/randomSurvivalForest/man/rsf.Rd | 96 -
randomSurvivalForest-3.6.2/randomSurvivalForest/man/varSel.Rd | 34
randomSurvivalForest-3.6.2/randomSurvivalForest/man/vimp.Rd | 16
randomSurvivalForest-3.6.2/randomSurvivalForest/man/wihs.Rd | 17
randomSurvivalForest-3.6.2/randomSurvivalForest/src/extern.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/factor.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/global.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/node.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/nodeOps.c | 19
randomSurvivalForest-3.6.2/randomSurvivalForest/src/nodeOps.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/nrutil.c | 116 -
randomSurvivalForest-3.6.2/randomSurvivalForest/src/nrutil.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsf.c | 380 -----
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsf.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfBootstrap.c | 38
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfBootstrap.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfEntry.c | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfEntry.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfFactorOps.c | 70 -
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfFactorOps.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfImportance.c | 167 --
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfImportance.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfImpute.c | 667 ----------
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfImpute.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfSplit.c | 175 --
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfSplit.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfSplitUtil.c | 348 -----
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfSplitUtil.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfStack.c | 654 ---------
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfStack.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfTree.c | 104 -
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfTree.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfUtil.c | 513 -------
randomSurvivalForest-3.6.2/randomSurvivalForest/src/rsfUtil.h | 2
randomSurvivalForest-3.6.2/randomSurvivalForest/src/trace.c | 5
randomSurvivalForest-3.6.2/randomSurvivalForest/src/trace.h | 2
73 files changed, 266 insertions(+), 3508 deletions(-)
Path: /cran/updated | permanent link
Title: Poor Man's GUI
Diff between pmg versions 0.9-41 dated 2009-12-10 and 0.9-42 dated 2010-03-09
More information about pmg at CRAN
Description: Simple GUI for R using gWidgets.
Author: John Verzani with contributions by Yvonnick Noel
Maintainer: John Verzani
ChangeLog | 6 ++++++
DESCRIPTION | 6 +++---
NEWS | 5 +++++
R/dHtest.R | 10 +++++-----
R/dModelsDialog.R | 4 ++--
R/dSummaryDialog.R | 6 +++---
R/pmg.iplots.R | 4 ++--
R/reshape.R | 4 ++--
inst/doc/pmg.pdf |binary
9 files changed, 28 insertions(+), 17 deletions(-)
Path: /cran/updated | permanent link
Title: Kernel smoothing
Diff between ks versions 1.6.10 dated 2010-02-24 and 1.6.11 dated 2010-03-09
More information about ks at CRAN
Description: Kernel density estimators and kernel discriminant analysis
for multivariate data
Author: Tarn Duong
Maintainer: Tarn Duong
DESCRIPTION | 8 ++---
R/kde.R | 87 +++++++++++++++++++++++++++++++++++++++++--------------
R/selector.R | 18 ++++++-----
README | 9 ++++-
inst/doc/kde.pdf |binary
man/plot.kde.Rd | 4 +-
6 files changed, 89 insertions(+), 37 deletions(-)
Path: /cran/updated | permanent link
Title: Toolkit implementation of gWidgets for RGtk2
Diff between gWidgetsRGtk2 versions 0.0-61 dated 2010-03-07 and 0.0-62 dated 2010-03-09
More information about gWidgetsRGtk2 at CRAN
Description: Port of gWidgets API to RGtk2
Author: Michael Lawrence, John Verzani
Maintainer: John Verzani
ChangeLog | 15 +++++++++
DESCRIPTION | 6 +--
NAMESPACE | 2 -
NEWS | 10 ++++++
R/gdfnotebook.R | 17 ++++++++--
R/gedit.R | 60 +++++++++++++++++++++++++++++---------
R/ggroup.R | 2 -
R/gmenu.R | 6 +++
R/gtoolbar.R | 5 +--
man/gWidgetsRGtk2-undocumented.Rd | 1
10 files changed, 99 insertions(+), 25 deletions(-)
Path: /cran/updated | permanent link
Title: Rcpp R/C++ interface package
Diff between Rcpp versions 0.7.7 dated 2010-02-14 and 0.7.8 dated 2010-03-09
More information about Rcpp at CRAN
Description: Seamless R and C++ integration The Rcpp package contains a
C++ library that facilitates the integration of R and C++ in
various ways.
R data types (SEXP) are matched to C++ objects in a class hierarchy.
All R types are supported (vectors, functions, environment, etc
...) and each type is mapped to a dedicated class. For
example, numeric vectors are represented as instances of the
Rcpp::NumericVector class, environments are represented as
instances of Rcpp::Environment, functions are represented as
Rcpp::Function, etc ...
The underlying C++ library also offers the Rcpp::wrap function which is
a templated function that transforms an arbitrary object into a
SEXP. This makes it straightforward to implement C++ logic in
terms of standard C++ types such as STL containers and then
wrap them when they need to be returned to R. Internally, wrap
uses advanced template meta programming techniques and
currently supports : primitive types (bool, int, double,
size_t, Rbyte, Rcomplex, std::string), STL containers (e.g
std::vector
Author: Dirk Eddelbuettel and Romain Francois, with contributions by
Simon Urbanek and David Reiss; based on code written during
2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel and Romain Francois
Rcpp-0.7.7/Rcpp/R/RcppExample.R |only
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Rcpp-0.7.7/Rcpp/src/Rcpp/SimpleVector.h |only
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Rcpp-0.7.8/Rcpp/DESCRIPTION | 11
Rcpp-0.7.8/Rcpp/INDEX | 7
Rcpp-0.7.8/Rcpp/NAMESPACE | 8
Rcpp-0.7.8/Rcpp/NEWS | 58 +
Rcpp-0.7.8/Rcpp/R/RcppLdpath.R | 8
Rcpp-0.7.8/Rcpp/cleanup | 5
Rcpp-0.7.8/Rcpp/configure.win | 22
Rcpp-0.7.8/Rcpp/inst/ChangeLog | 177 +++
Rcpp-0.7.8/Rcpp/inst/doc/Makefile | 12
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Rcpp-0.7.8/Rcpp/inst/doc/Rcpp-unitTests.Rnw | 7
Rcpp-0.7.8/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary
Rcpp-0.7.8/Rcpp/inst/doc/index.html | 1
Rcpp-0.7.8/Rcpp/inst/doc/rcpp.index.html | 1
Rcpp-0.7.8/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.html | 46
Rcpp-0.7.8/Rcpp/inst/doc/unitTests-results/Rcpp-unitTests.txt | 547 +++++-----
Rcpp-0.7.8/Rcpp/inst/examples/FastLM |only
Rcpp-0.7.8/Rcpp/inst/examples/RcppInline/RcppInlineWithLibsExamples.r | 10
Rcpp-0.7.8/Rcpp/inst/examples/functionCallback/buildAndRun.sh | 2
Rcpp-0.7.8/Rcpp/inst/skeleton/Makevars | 31
Rcpp-0.7.8/Rcpp/inst/skeleton/Makevars.win | 4
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.CharacterVector.R | 10
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.Column.R |only
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.Function.R | 47
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.GenericVector.R | 44
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.IntegerVector.R | 99 +
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.Language.R | 21
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.Matrix.R |only
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.Row.R |only
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.as.R | 18
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.clone.R | 3
Rcpp-0.7.8/Rcpp/inst/unitTests/runit.macros.R |only
Rcpp-0.7.8/Rcpp/man/Rcpp-package.Rd | 7
Rcpp-0.7.8/Rcpp/man/Rcpp.package.skeleton.Rd | 20
Rcpp-0.7.8/Rcpp/src/Environment.cpp | 20
Rcpp-0.7.8/Rcpp/src/Makevars | 8
Rcpp-0.7.8/Rcpp/src/Makevars.win | 43
Rcpp-0.7.8/Rcpp/src/RObject.cpp | 4
Rcpp-0.7.8/Rcpp/src/Rcpp.h | 13
Rcpp-0.7.8/Rcpp/src/Rcpp/DottedPair.h | 3
Rcpp-0.7.8/Rcpp/src/Rcpp/Environment.h | 20
Rcpp-0.7.8/Rcpp/src/Rcpp/Function.h | 1
Rcpp-0.7.8/Rcpp/src/Rcpp/Language.h | 19
Rcpp-0.7.8/Rcpp/src/Rcpp/Named.h | 39
Rcpp-0.7.8/Rcpp/src/Rcpp/Promise.h | 4
Rcpp-0.7.8/Rcpp/src/Rcpp/RObject.h | 7
Rcpp-0.7.8/Rcpp/src/Rcpp/StringTransformer.h |only
Rcpp-0.7.8/Rcpp/src/Rcpp/Symbol.h | 1
Rcpp-0.7.8/Rcpp/src/Rcpp/Vector.h |only
Rcpp-0.7.8/Rcpp/src/Rcpp/WeakReference.h | 1
Rcpp-0.7.8/Rcpp/src/Rcpp/XPtr.h | 2
Rcpp-0.7.8/Rcpp/src/Rcpp/as.h | 114 --
Rcpp-0.7.8/Rcpp/src/Rcpp/exceptions.h |only
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Rcpp-0.7.8/Rcpp/src/Rcpp/internal/Proxy_Iterator.h |only
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Rcpp-0.7.8/Rcpp/src/Rcpp/internal/export.h |only
Rcpp-0.7.8/Rcpp/src/Rcpp/internal/r_vector.h | 2
Rcpp-0.7.8/Rcpp/src/Rcpp/internal/wrap.h | 101 +
Rcpp-0.7.8/Rcpp/src/Rcpp/r_cast.h | 5
Rcpp-0.7.8/Rcpp/src/Rcpp/traits/Exporter.h |only
Rcpp-0.7.8/Rcpp/src/Rcpp/traits/has_iterator.h | 40
Rcpp-0.7.8/Rcpp/src/Rcpp/traits/r_type_traits.h | 1
Rcpp-0.7.8/Rcpp/src/Rcpp/traits/wrap_type_traits.h | 5
Rcpp-0.7.8/Rcpp/src/RcppCommon.cpp | 45
Rcpp-0.7.8/Rcpp/src/RcppCommon.h | 52
Rcpp-0.7.8/Rcpp/src/WeakReference.cpp | 1
Rcpp-0.7.8/Rcpp/src/r_cast.cpp | 3
91 files changed, 1230 insertions(+), 550 deletions(-)
Path: /cran/updated | permanent link
Title: Diagnostic test accuracy evaluation for medical professionals.
Diff between DiagnosisMed versions 0.2.2.2 dated 2009-08-25 and 0.2.3 dated 2010-03-09
More information about DiagnosisMed at CRAN
Description: DiagnosisMed is a package to analyze data from diagnostic
test accuracy evaluating health conditions. It is being built
to be used by health professionals. This package is able to
estimate sensitivity and specificity from categorical and
continuous test results including some evaluations of
indeterminate results, or compare different categorical tests,
and estimate reasonble cut-offs of tests and display it in a
way commonly used by health professionals. No graphical
interface is avalible yet. Partners are most welcome.
Author: Pedro Brasil
Maintainer: Pedro Brasil
DiagnosisMed-0.2.2.2/DiagnosisMed/R/diagnosisI.r |only
DiagnosisMed-0.2.2.2/DiagnosisMed/man/plot.diag.Rd |only
DiagnosisMed-0.2.3/DiagnosisMed/DESCRIPTION | 15 +-
DiagnosisMed-0.2.3/DiagnosisMed/R/LRgraph.r | 33 +++---
DiagnosisMed-0.2.3/DiagnosisMed/R/ROC.r | 12 +-
DiagnosisMed-0.2.3/DiagnosisMed/R/diagnosis.r | 93 +++++++++++++-----
DiagnosisMed-0.2.3/DiagnosisMed/R/plot.ROC.r | 30 ++---
DiagnosisMed-0.2.3/DiagnosisMed/R/plot.diag.r | 5
DiagnosisMed-0.2.3/DiagnosisMed/R/print.ROC.r | 2
DiagnosisMed-0.2.3/DiagnosisMed/R/print.diag.r | 35 +++---
DiagnosisMed-0.2.3/DiagnosisMed/R/summary.diag.R |only
DiagnosisMed-0.2.3/DiagnosisMed/R/zzz.r | 2
DiagnosisMed-0.2.3/DiagnosisMed/man/LRgrgaph.Rd | 37 +++----
DiagnosisMed-0.2.3/DiagnosisMed/man/ROC.Rd | 93 +++++++++---------
DiagnosisMed-0.2.3/DiagnosisMed/man/TGROC.Rd | 4
DiagnosisMed-0.2.3/DiagnosisMed/man/diagnosis.Rd | 108 ++++++++++++---------
16 files changed, 273 insertions(+), 196 deletions(-)
Path: /cran/updated | permanent link
Title: Robust PCA by Projection Pursuit
Diff between pcaPP versions 1.7 dated 2009-07-18 and 1.8 dated 2010-03-09
More information about pcaPP at CRAN
Description: Robust PCA by Projection Pursuit
Author: Peter Filzmoser Heinrich Fritz Klaudius Kalcher
Maintainer: Peter Filzmoser
pcaPP-1.7/pcaPP/README |only
pcaPP-1.8/pcaPP/DESCRIPTION | 6
pcaPP-1.8/pcaPP/NAMESPACE |only
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pcaPP-1.8/pcaPP/src/fastpca.h | 11 -
pcaPP-1.8/pcaPP/src/rpcGrid.cpp | 4
pcaPP-1.8/pcaPP/src/rsubst.cpp | 50 ++++-
pcaPP-1.8/pcaPP/src/rsubst.h | 4
14 files changed, 383 insertions(+), 39 deletions(-)
Path: /cran/updated | permanent link
Title: Estimation for multivariate normal and Student-t data with
monotone missingness
Diff between monomvn versions 1.8 dated 2010-01-14 and 1.8-1 dated 2010-03-09
More information about monomvn at CRAN
Description: Estimation of multivariate normal and student-t data of
arbitrary dimension where the pattern of missing data is
monotone. Through the use of parsimonious/shrinkage regressions
(plsr, pcr, lasso, ridge, etc.), where standard regressions
fail, the package can handle a nearly arbitrary amount of
missing data. The current version supports maximum likelihood
inference and a full Bayesian approach employing scale-mixtures
for the lasso (double-exponential) and Normal-Gamma priors, and
Student-t errors. Monotone data augmentation extends this
Bayesian approach to arbitrary missingness patterns. A fully
functional standalone interface to the Bayesian lasso (from
Park & Casella), Normal-Gamma (from Griffin & Brown), and ridge
regression with model selection via Reversible Jump, and
student-t errors (from Geweke) is also provided
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
ChangeLog | 9 +++++++++
DESCRIPTION | 8 ++++----
src/blasso.cc | 12 +++++++-----
src/bmonomvn.cc | 6 ++----
4 files changed, 22 insertions(+), 13 deletions(-)
Path: /cran/updated | permanent link
Title: Multivariate Statistical Analysis in Chemometrics
Diff between chemometrics versions 0.7 dated 2010-03-04 and 0.8 dated 2010-03-09
More information about chemometrics at CRAN
Description: This package is the R companion to the book "Introduction
to Multivariate Statistical Analysis in Chemometrics" written
by K. Varmuza and P. Filzmoser (2009)
Author: P. Filzmoser and K. Varmuza
Maintainer: P. Filzmoser
DESCRIPTION | 8 ++++----
R/prm_dcv.R | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: Bradley-Terry Models -- this package is now deprecated in favour
of 'BradleyTerry2'
Diff between BradleyTerry versions 0.8-7 dated 2008-07-11 and 0.8-8 dated 2010-03-09
More information about BradleyTerry at CRAN
Description: Specify and fit the Bradley-Terry model and structured
versions
Author: David Firth
Maintainer: David Firth
DESCRIPTION | 16 ++++++++++------
R/firstLib.R |only
2 files changed, 10 insertions(+), 6 deletions(-)
Path: /cran/updated | permanent link
Title: Univariate and Multivariate Spatial Modeling
Diff between spBayes versions 0.1-5 dated 2010-01-08 and 0.1-6 dated 2010-03-09
More information about spBayes at CRAN
Description: spBayes fits univariate and multivariate models with
Markov chain Monte Carlo (MCMC).
Author: Andrew O. Finley
Maintainer: Andrew O. Finley
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spBayes-0.1-6/spBayes/NAMESPACE | 3
spBayes-0.1-6/spBayes/R/bayesRegression.R | 23 +-
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spBayes-0.1-6/spBayes/R/spGLM.R | 149 +++++++++-----
spBayes-0.1-6/spBayes/R/spPredict.R | 25 --
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spBayes-0.1-6/spBayes/man/spGGT.Rd | 8
spBayes-0.1-6/spBayes/man/spGLM.Rd | 49 +++-
spBayes-0.1-6/spBayes/man/spMvGLM.Rd | 4
spBayes-0.1-6/spBayes/man/spMvLM.Rd | 7
spBayes-0.1-6/spBayes/man/spPredict.Rd | 201 +++++---------------
spBayes-0.1-6/spBayes/src/mvLM.cpp |only
spBayes-0.1-6/spBayes/src/spGLM.cpp | 16 -
spBayes-0.1-6/spBayes/src/spGLMPredict.cpp | 19 -
spBayes-0.1-6/spBayes/src/spGLM_AMCMC.cpp | 8
spBayes-0.1-6/spBayes/src/spLM.cpp | 10
spBayes-0.1-6/spBayes/src/spLMPredict.cpp | 12 -
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spBayes-0.1-6/spBayes/src/spMvGLM.cpp | 8
spBayes-0.1-6/spBayes/src/spMvGLMPredict.cpp | 8
spBayes-0.1-6/spBayes/src/spMvLMPredict.cpp | 36 ++-
spBayes-0.1-6/spBayes/src/spPPGLM.cpp | 16 -
spBayes-0.1-6/spBayes/src/spPPGLM_AMCMC.cpp | 8
spBayes-0.1-6/spBayes/src/spPPLM.cpp | 8
spBayes-0.1-6/spBayes/src/util.cpp | 12 +
spBayes-0.1-6/spBayes/src/util.h | 2
36 files changed, 325 insertions(+), 319 deletions(-)
Path: /cran/updated | permanent link
Title: classes and methods for spatial data
Diff between sp versions 0.9-60 dated 2010-02-15 and 0.9-61 dated 2010-03-09
More information about sp at CRAN
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
Author: Edzer Pebesma
Maintainer: Edzer Pebesma
ChangeLog | 9
DESCRIPTION | 10
inst/ChangeLog | 9
inst/doc/sp.pdf | 957 +++++++++++++++++++++++++++-----------------------------
4 files changed, 495 insertions(+), 490 deletions(-)
Path: /cran/updated | permanent link
Title: R interface to SPRNG (Scalable Parallel Random Number
Generators)
Diff between rsprng versions 0.4 dated 2008-06-08 and 1.0 dated 2010-03-09
More information about rsprng at CRAN
Description: Provides interface to SPRNG 2.0 APIs, and examples and
documentation for its use.
Author: Na (Michael) Li
Maintainer: Na (Michael) Li
rsprng-0.4/rsprng/src/.cvsignore |only
rsprng-0.4/rsprng/src/Makevars.gnuwin32 |only
rsprng-1.0/rsprng/ChangeLog | 8 +++++++-
rsprng-1.0/rsprng/DESCRIPTION | 22 ++++++++++++----------
rsprng-1.0/rsprng/src/Makevars.in | 2 +-
rsprng-1.0/rsprng/src/Makevars.win |only
rsprng-1.0/rsprng/src/sprng_core.c | 13 +++++++++++++
7 files changed, 33 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Title: Semiparametric Bayesian Gaussian copula estimation and
imputation
Diff between sbgcop versions 0.95 dated 2007-03-09 and 0.975 dated 2010-03-09
More information about sbgcop at CRAN
Description: This package estimates parameters of a Gaussian copula,
treating the univariate marginal distributions as nuisance
parameters as described in Hoff(2007). It also provides a
semiparametric imputation procedure for missing multivariate
data.
Author: Peter Hoff
Maintainer: Peter Hoff
DESCRIPTION | 29 ++++++++++++++++-------------
R/plot.psgc.R | 3 ++-
R/sbgcop.mcmc.R | 46 ++++++++++++++++++++++++++++++----------------
man/sbgcop.mcmc.Rd | 18 ++++++++++++++----
man/sbgcop.package.Rd | 6 +++---
5 files changed, 65 insertions(+), 37 deletions(-)
Path: /cran/updated | permanent link
Title: Tools for Two-Dimensional Monte-Carlo Simulations
Diff between mc2d versions 0.1-6 dated 2009-09-12 and 0.1-7 dated 2010-03-09
More information about mc2d at CRAN
Description: Various distributions and utilities to ease the use of R
to build and study Two-Dimensional Monte-Carlo simulations
Author: Regis Pouillot
Maintainer: Regis Pouillot
DESCRIPTION | 11 +-
R/Ops.mcnode.R | 172 +++++++++++++++++++++++++++++++---------------
R/empiricalD.R | 5 -
R/extractvar.R |only
R/lhs.R | 4 -
R/mcdata.R | 4 -
R/mcratio.R |only
R/mcstoc.R | 134 ++++++++++++++++++++++-------------
R/plot.mc.R | 43 ++++++++---
R/plot.mccut.R | 2
R/plot.tornado.R | 19 +++--
R/print.mc.R | 9 +-
R/rmultinomial.R | 2
R/rmultinormal.R | 2
R/rtrunc.R | 15 ++--
inst/CITATION |only
inst/NEWS | 24 ++++++
inst/doc/Illustration.eps |only
inst/doc/Illustration.pdf |only
inst/doc/docmcEnglish.bib |only
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man/dmultinomial.Rd | 5 -
man/extractvar.Rd |only
man/lhs.Rd | 2
man/mcratio.Rd |only
man/mcstoc.Rd | 15 ++--
man/plot.mc.Rd | 25 +++---
man/plot.tornado.Rd | 7 +
man/rtrunc.Rd | 11 ++
32 files changed, 346 insertions(+), 165 deletions(-)
Path: /cran/updated | permanent link
Title: Modelization for Functional AutoRegressive processes
Diff between far versions 0.6-2 dated 2007-10-02 and 0.6-3 dated 2010-03-09
More information about far at CRAN
Description: Modelizations and previsions functions for Functional
AutoRegressive processes using nonparametric methods:
functional kernel, estimation of the covariance operator in a
subspace, ...
Author: Damon Julien
Maintainer: Damon Julien
DESCRIPTION | 23 ++++++++++++-----------
NAMESPACE | 4 +++-
NEWS | 7 +++++++
R/fdata.R | 15 ++++++++++++++-
man/fdata.Rd | 1 +
man/interpol.matrix.Rd | 2 +-
man/simul.far.Rd | 8 ++++----
man/simul.far.wiener.Rd | 4 ++--
man/simul.farx.Rd | 8 ++++----
9 files changed, 48 insertions(+), 24 deletions(-)
Path: /cran/updated | permanent link
Title: Measuring functional diversity (FD) from multiple traits, and
other tools for functional ecology
Diff between FD versions 1.0-5 dated 2009-11-30 and 1.0-7 dated 2010-03-09
More information about FD at CRAN
Description: FD is a package to compute different multidimensional FD
indices. It implements a distance-based framework to measure FD
that allows any number and type of functional traits, and can
also consider species relative abundances. It also contains
other useful tools for functional ecology.
Author: Etienne Laliberté, Bill Shipley
Maintainer: Etienne Laliberté
DESCRIPTION | 8 +--
R/maxent.R | 129 ++++++++++++++++++++++++++++++++---------------------
R/maxent.test.R |only
inst/CITATION | 8 ++-
inst/NEWS | 11 ++++
man/FD-package.Rd | 8 +--
man/dbFD.Rd | 8 +--
man/fdisp.Rd | 10 ++--
man/maxent.Rd | 59 +++++++++++++-----------
man/maxent.test.Rd |only
man/simul.dbFD.Rd | 2
src/itscale5.f |only
12 files changed, 146 insertions(+), 97 deletions(-)
Path: /cran/updated | permanent link
Title: Provides a GUI to several statistical methods useful for causal
assessment.
Diff between CADStat versions 2.1-21 dated 2009-06-29 and 2.2-2 dated 2010-03-09
More information about CADStat at CRAN
Description: Using JGR, provides a GUI to several statistical methods -
scatterplot, boxplot, linear regression, generalized linear
regression, quantile, regression, conditional probability
calculations, and regression trees.
Author: Lester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and
Mark Fitzgerald
Maintainer: Lester Yuan
CADStat-2.1-21/CADStat/R/JGRMessageBox.r |only
CADStat-2.1-21/CADStat/R/bioinfer.new.JGR.R |only
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CADStat-2.1-21/CADStat/man/boxplot.JGR.Rd |only
CADStat-2.2-2/CADStat/DESCRIPTION | 8
CADStat-2.2-2/CADStat/R/CADStat.help.R | 5
CADStat-2.2-2/CADStat/R/JGRMessageBox.R |only
CADStat-2.2-2/CADStat/R/bioinfer.JGR.R |only
CADStat-2.2-2/CADStat/R/buildresultsXML.R | 1
CADStat-2.2-2/CADStat/R/bxplot.JGR.R |only
CADStat-2.2-2/CADStat/R/conditionalprob.JGR.R | 49 +-
CADStat-2.2-2/CADStat/R/cor.JGR.R | 102 ++---
CADStat-2.2-2/CADStat/R/glm.JGR.R | 191 +++++------
CADStat-2.2-2/CADStat/R/glm.pred.JGR.R | 122 ++++---
CADStat-2.2-2/CADStat/R/pca.fa.JGR.R |only
CADStat-2.2-2/CADStat/R/rpart.JGR.R | 35 +-
CADStat-2.2-2/CADStat/R/rq.JGR.R | 137 ++++---
CADStat-2.2-2/CADStat/R/scatterplot2.JGR.R | 189 ++++------
CADStat-2.2-2/CADStat/R/zzz.R | 22 -
CADStat-2.2-2/CADStat/data |only
CADStat-2.2-2/CADStat/inst/doc/bioinfer.JGR-img1.png |binary
CADStat-2.2-2/CADStat/inst/doc/bioinfer.JGR.html | 76 ++--
CADStat-2.2-2/CADStat/inst/doc/pca.JGR-img1.png |only
CADStat-2.2-2/CADStat/inst/doc/pca.fa.JGR.html |only
CADStat-2.2-2/CADStat/inst/doc/pca.fa.JGR_html_70837ecc.png |only
CADStat-2.2-2/CADStat/inst/doc/pca.fa.JGR_html_7b2961fb.png |only
CADStat-2.2-2/CADStat/inst/doc/pca.fa.JGR_html_m5798ce7b.png |only
CADStat-2.2-2/CADStat/inst/doc/trait.stat.JGR.html |only
CADStat-2.2-2/CADStat/inst/doc/trait.tool-img1.png |only
CADStat-2.2-2/CADStat/inst/java/CADStat.jar |only
CADStat-2.2-2/CADStat/inst/menu/menu.xml | 40 --
CADStat-2.2-2/CADStat/man/bioinfer.JGR.Rd |only
CADStat-2.2-2/CADStat/man/bxplot.JGR.Rd |only
CADStat-2.2-2/CADStat/man/pca.fa.JGR.Rd |only
55 files changed, 487 insertions(+), 490 deletions(-)
Path: /cran/updated | permanent link
Title: Community Ecology Package
Diff between vegan versions 1.17-1 dated 2010-02-18 and 1.17-2 dated 2010-03-08
More information about vegan at CRAN
Description: Ordination methods, diversity analysis and other functions
for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre
Legendre, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M.
Henry H. Stevens, Helene Wagner
Maintainer: Jari Oksanen
DESCRIPTION | 10
R/densityplot.oecosimu.R | 3
R/nesteddisc.R | 23
R/ordistep.R | 5
R/print.permutest.betadisper.R | 5
R/screeplot.cca.R | 42
R/screeplot.prcomp.R | 31
R/screeplot.princomp.R | 31
inst/ChangeLog | 23
inst/NEWS | 29
inst/doc/FAQ-vegan.pdf |binary
inst/doc/decision-vegan.Rnw | 2
inst/doc/decision-vegan.pdf | 4070 +++++++++++++++++++++--------------------
inst/doc/decision-vegan.tex | 16
inst/doc/diversity-vegan.Rnw | 2
inst/doc/diversity-vegan.pdf |binary
inst/doc/diversity-vegan.tex | 67
inst/doc/intro-vegan.Rnw | 2
inst/doc/intro-vegan.pdf |binary
inst/doc/intro-vegan.tex | 49
man/ordistep.Rd | 11
man/screeplot.cca.Rd | 9
22 files changed, 2411 insertions(+), 2019 deletions(-)
Path: /cran/updated | permanent link
Title: Processing and Simulating Genotype Data for Trio Logic
Regression
Diff between trio versions 1.0.13 dated 2010-03-04 and 1.0.14 dated 2010-03-08
More information about trio at CRAN
Description: Set up matched case-pseudo controls genotypes data for
trios in order to run trio logic regreesion, to impute missing
genotypes in trios, or to simulate case-parent trios with
disease risk dependent on SNP-SNP interaction. This package
furthermore contains functions for computing the values of
pairwise LD measures and for identifying LD blocks.
Author: Qing Li, Holger Schwender
Maintainer: Qing Li
DESCRIPTION | 8
R/tdt.R | 83 +++-
inst/doc/trio.pdf | 1067 ++++++++++++++++++++++++++----------------------------
man/tdt2way.Rd | 16
4 files changed, 609 insertions(+), 565 deletions(-)
Path: /cran/updated | permanent link
Title: Estimate inverse probability weights.
Diff between ipw versions 1.0-3 dated 2010-03-05 and 1.0-4 dated 2010-03-08
More information about ipw at CRAN
Description: Estimate inverse probability weights. These are typically
used to perform inverse probability weighting (IPW) to fit a
marginal structural model (MSM), to estimate causal effects
from observational data. Both data from point treatment
situations and longitudinal studies can be used.
Author: Willem M. van der Wal
Maintainer: Willem M. van der Wal
DESCRIPTION | 6 +++---
R/tstartfun.R | 9 ++++-----
man/ipwpoint.Rd | 16 ++++++++++------
man/tstartfun.Rd | 3 +--
4 files changed, 18 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: Interactive visualization of dataframes and factorial planes
Diff between dynGraph versions 0.99070509 dated 2009-05-17 and 0.99100403 dated 2010-03-08
More information about dynGraph at CRAN
Description: Interactive visualization of dataframes and factorial
planes
Author: Sebastien Le, Julien Durand
Maintainer: Sebastien Le
dynGraph-0.99070509/dynGraph/inst/etc/dynGraph/R |only
dynGraph-0.99070509/dynGraph/inst/etc/dynGraph/dynGraph_new.jar |only
dynGraph-0.99100403/dynGraph/DESCRIPTION | 10 +++++-----
dynGraph-0.99100403/dynGraph/R/dynGraph.R | 9 ++++++---
dynGraph-0.99100403/dynGraph/man/dynGraph.Rd | 2 +-
5 files changed, 12 insertions(+), 9 deletions(-)
Path: /cran/updated | permanent link
Title: Predict environmental conditions from biological observations
Diff between bio.infer versions 1.2-7 dated 2010-02-28 and 1.2-8 dated 2010-03-08
More information about bio.infer at CRAN
Description: Imports benthic count data, reformats this data, and
computes environmental inferences from this data.
Author: Lester L. Yuan
Maintainer: Lester L. Yuan
DESCRIPTION | 8 ++--
R/get.otu.R | 88 +++++++++++++++++++++++++++---------------------------
R/get.taxonomic.R | 9 ++++-
3 files changed, 57 insertions(+), 48 deletions(-)
Path: /cran/updated | permanent link
Title: Data Structures and Algorithms for Relations
Diff between relations versions 0.5-6 dated 2010-02-10 and 0.5-7 dated 2010-03-08
More information about relations at CRAN
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate
functions, and fitters for consensus relations.
Author: Kurt Hornik and David Meyer
Maintainer: Kurt Hornik
DESCRIPTION | 10 +-
NEWS | 5 +
R/choice.R | 10 +-
R/consensus.R | 180 ++++++++++++++++++++++++++++---------------------
R/fitters.R | 74 +++++++++++---------
R/impute.R | 2
R/lsap.R | 72 +++++++++++++++++++
R/utilities.R | 20 +++++
inst/NEWS | 5 +
inst/doc/relations.pdf |binary
man/choice.Rd | 7 +
man/consensus.Rd | 57 ++++++++++-----
12 files changed, 300 insertions(+), 142 deletions(-)
Path: /cran/updated | permanent link
Title: Collapsed Gibbs sampling methods for topic models.
Diff between lda versions 1.1 dated 2009-09-29 and 1.2 dated 2010-03-08
More information about lda at CRAN
Description: This package implements latent Dirichlet allocation (LDA)
and related models. This includes (but is not limited to)
sLDA, corrLDA, and the mixed-membership stochastic blockmodel.
Inference for all of these models is implemented via a fast
collapsed Gibbs sampler writtten in C. Utility functions for
reading/writing data typically used in topic models, as well as
tools for examining posterior distributions are also included.
Author: Jonathan Chang
Maintainer: Jonathan Chang
DESCRIPTION | 8 +-
R/lda-internal.R | 8 +-
R/lda.collapsed.gibbs.sampler.R | 10 +--
R/mmsb.collapsed.gibbs.sampler.R | 4 -
R/rtm.collapsed.gibbs.sampler.R | 7 +-
R/rtm.em.R |only
R/slda.em.R | 7 +-
R/slda.predict.R |only
data/cora.cites.rda |binary
data/cora.documents.rda |binary
data/cora.titles.rda |binary
data/cora.vocab.rda |binary
data/poliblog.documents.rda |binary
data/poliblog.ratings.rda |binary
data/poliblog.vocab.rda |binary
data/sampson.rda |binary
demo/lda.R | 3 -
demo/mmsb.R | 109 ++++++++++++++++++-------------------
demo/rtm.R | 1
demo/slda.R | 30 ++++++++++
man/lda-package.Rd | 19 +++++-
man/lda.collapsed.gibbs.sampler.Rd | 27 ++++++---
man/lexicalize.Rd | 7 +-
man/predictive.distribution.Rd | 1
man/rtm.collapsed.gibbs.sampler.Rd | 32 ++++++++++
man/slda.predict.Rd |only
src/gibbs.c | 63 +++++++++++++++------
27 files changed, 226 insertions(+), 110 deletions(-)
Path: /cran/updated | permanent link
Title: Demonstrate Animations in Statistics
Diff between animation versions 1.0-10 dated 2009-12-02 and 1.1-0 dated 2010-03-08
More information about animation at CRAN
Description: This package consists of various functions for animations
in statistics, covering many areas such as probability theory,
mathematical statistics, multivariate statistics, nonparametric
statistics, sampling survey, linear models, time series,
computational statistics, data mining and machine learning.
These functions might be of help in teaching statistics and
data analysis.
Author: Yihui Xie
Maintainer: Yihui Xie
DESCRIPTION | 10 +++----
R/ani.start.R | 2 -
R/ani.stop.R | 4 +--
R/saveLatex.R | 10 ++++++-
R/saveMovie.R | 60 -----------------------------------------------
R/tidy.source.R | 5 ++-
demo/00Index | 4 +++
demo/Xmas.r |only
demo/recur.leaf.r |only
demo/recur.snow.r |only
demo/recur.tree.r |only
inst/NEWS | 51 ++++++++++++++++++++++++++++++++++-----
inst/js/animate.sty |only
inst/js/animfp.sty |only
man/animation-package.Rd | 4 +--
man/saveLatex.Rd | 13 +++++++---
man/saveMovie.Rd | 2 -
man/tidy.source.Rd | 6 +++-
18 files changed, 84 insertions(+), 87 deletions(-)
Path: /cran/updated | permanent link
Title: Mining frequent sequences
Diff between arulesSequences versions 0.1-8 dated 2009-06-15 and 0.1-9 dated 2010-03-07
More information about arulesSequences at CRAN
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler
Maintainer: Christian Buchta
CHANGELOG | 4 ++++
DESCRIPTION | 10 +++++-----
data/zaki.rda |binary
man/c-methods.Rd | 2 +-
man/info-methods.Rd | 2 +-
man/match-methods.Rd | 2 +-
man/timedsequences-class.Rd | 8 ++++----
7 files changed, 16 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Title: R/EQS Interface
Diff between REQS versions 0.8-5 dated 2009-11-19 and 0.8-6 dated 2010-03-07
More information about REQS at CRAN
Description: This package contains the function run.eqs() which calls
an EQS script file, executes the EQS estimation, and, finally,
imports the results as R objects. These two steps can be
performed separately: call.eqs() calls and executes EQS,
whereas read.eqs() imports existing EQS outputs as objects into
R.
Author: Patrick Mair, Eric Wu
Maintainer: Eric Wu
DESCRIPTION | 8 ++++----
R/read.eqs.R | 39 +++++++++++++++++++++++++++------------
2 files changed, 31 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: vcd additions
Diff between vcdExtra versions 0.4-0 dated 2010-02-28 and 0.4-1 dated 2010-03-07
More information about vcdExtra at CRAN
Description: Provides additional data sets, methods and documentation
to complement the vcd package for Visualizing Categorical Data.
Author: Michael Friendly with Heather Turner, David Firth and Achim
Zeileis
Maintainer: Michael Friendly
DESCRIPTION | 10 ++--
NAMESPACE | 12 +++--
NEWS | 10 ++++
R/modFit.R |only
R/mosaic.glm.R | 63 +++++++++++++++++------------
data/Heckman.rda |binary
demo/00Index | 2
demo/Wong2-3.R |only
inst/doc/fig/vcd-tut-Arthritis.pdf | 4 -
inst/doc/fig/vcd-tut-TV-mosaic.pdf | 4 -
inst/doc/fig/vcd-tut-agreesex.pdf | 4 -
inst/doc/fig/vcd-tut-art21.pdf | 4 -
inst/doc/fig/vcd-tut-art22.pdf | 4 -
inst/doc/fig/vcd-tut-ca-haireye.pdf | 4 -
inst/doc/fig/vcd-tut-cdplot.pdf | 4 -
inst/doc/fig/vcd-tut-fourfold1.pdf | 4 -
inst/doc/fig/vcd-tut-hec1.pdf | 4 -
inst/doc/fig/vcd-tut-hec2.pdf | 4 -
inst/doc/fig/vcd-tut-hec3.pdf | 4 -
inst/doc/fig/vcd-tut-mental-plots1.pdf | 4 -
inst/doc/fig/vcd-tut-mental-plots2.pdf | 4 -
inst/doc/fig/vcd-tut-oddsratio.pdf | 4 -
inst/doc/fig/vcd-tut-spine2.pdf | 4 -
inst/doc/fig/vcd-tut-spine3.pdf | 4 -
inst/doc/vcd-tutorial.pdf | 70 ++++++++++++++++-----------------
man/Abortion.Rd | 1
man/Caesar.Rd | 43 ++++++++++++++++++--
man/Detergent.Rd | 11 +++++
man/Dyke.Rd | 14 +++++-
man/Heckman.Rd | 45 +++++++++++++++++----
man/modFit.Rd |only
man/mosaic.glm.Rd | 30 ++++++++++----
man/vcdExtra-package.Rd | 4 -
33 files changed, 254 insertions(+), 125 deletions(-)
Path: /cran/updated | permanent link
Title: Benchmarking routine for R
Diff between rbenchmark versions 0.2 dated 2009-03-27 and 0.3 dated 2010-03-07
More information about rbenchmark at CRAN
Description: rbenchmark is inspired by the Perl module Benchmark, and
is intended to facilitate benchmarking of arbitrary R code. The
library consists of just one function, benchmark, which is a
simple wrapper around system.time. Given a specification of
the benchmarking process (counts of replications, evaluation
environment) and an arbitrary number of expressions, benchmark
evaluates each of the expressions in the specified environment,
replicating the evaluation as many times as specified, and
returning the results conveniently wrapped into a data frame.
Author: Wacek Kusnierczyk
Maintainer: Wacek Kusnierczyk
DESCRIPTION | 8 ++++----
R/benchmark.R | 18 ++++++++++++------
man/benchmark-package.Rd | 4 ++--
man/benchmark.Rd | 8 +++++---
4 files changed, 23 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Title: A graphical user interface for data mining in R using Gnome
Diff between rattle versions 2.5.23 dated 2010-03-04 and 2.5.24 dated 2010-03-07
More information about rattle at CRAN
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
Author: Graham Williams
Maintainer: Graham Williams
DESCRIPTION | 8
R/data.R | 7
R/evaluate.R | 165 +++--
R/help.R | 1031 ++++++++++++++++++-------------------
R/rattle.R | 8
data/weatherAUS.RData |binary
inst/ChangeLog | 14
inst/doc/rattle.pdf |binary
inst/etc/rattle.glade | 65 +-
inst/po/de/LC_MESSAGES/R-rattle.mo |binary
inst/po/es/LC_MESSAGES/R-rattle.mo |binary
inst/po/ja/LC_MESSAGES/R-rattle.mo |binary
12 files changed, 702 insertions(+), 596 deletions(-)
Path: /cran/updated | permanent link
Title: Data analysis in ecology
Diff between pgirmess versions 1.4.3 dated 2009-12-11 and 1.4.4 dated 2010-03-07
More information about pgirmess at CRAN
Description: Miscellaneous functions for analysis and display of
ecological and spatial data
Author: Patrick Giraudoux
Maintainer: Patrick Giraudoux
DESCRIPTION | 8 ++++----
R/kruskalmc.r | 3 +++
R/shannon.R | 13 +++++++------
man/classnum.Rd | 7 +++----
man/kruskalmc.Rd | 2 +-
man/shannon.Rd | 11 +++++------
6 files changed, 23 insertions(+), 21 deletions(-)
Path: /cran/updated | permanent link
Title: Isopam (Hierarchical Clustering)
Diff between isopam versions 0.9-5 dated 2010-02-18 and 0.9-6 dated 2010-03-07
More information about isopam at CRAN
Description: Isopam clustering algorithm and utilities. Isopam
optimizes clusters and optionally cluster numbers in a brute
force style and aims at an optimum separation by a limited
number of indicative descriptors (typically species).
Author: Sebastian Schmidtlein with contributions from Jason Collison
Maintainer: Sebastian Schmidtlein
isopam-0.9-5/isopam/R/isopam.2.r |only
isopam-0.9-5/isopam/man/isopam.2.Rd |only
isopam-0.9-6/isopam/DESCRIPTION | 8
isopam-0.9-6/isopam/R/isopam.R | 408 +++++++++++++++++++++---------------
isopam-0.9-6/isopam/R/isotab.R | 87 ++++++-
isopam-0.9-6/isopam/man/isopam.Rd | 142 ++++++------
6 files changed, 392 insertions(+), 253 deletions(-)
Path: /cran/updated | permanent link
Title: Toolkit implementation of gWidgets for RGtk2
Diff between gWidgetsRGtk2 versions 0.0-59 dated 2010-02-13 and 0.0-61 dated 2010-03-07
More information about gWidgetsRGtk2 at CRAN
Description: Port of gWidgets API to RGtk2
Author: Michael Lawrence, John Verzani
Maintainer: John Verzani
ChangeLog | 11 +++++++++++
DESCRIPTION | 6 +++---
NAMESPACE | 4 +++-
NEWS | 13 +++++++++++++
R/gmenu.R | 2 +-
R/gvarbrowser.R | 9 +++++++++
TODO.txt | 3 ++-
man/gWidgetsRGtk2-package.Rd | 6 ++++++
8 files changed, 48 insertions(+), 6 deletions(-)
Path: /cran/updated | permanent link
Title: Baseline identification and peak decomposition for x-ray
diffractograms
Diff between diffractometry versions 0.1-00 dated 2008-06-13 and 0.1-02 dated 2010-03-07
More information about diffractometry at CRAN
Description: Residual-based baseline identification and peak
decomposition for x-ray diffractograms as introduced in
Davies/Gather/Mergel/Meise/Mildenberger (2008).
Author: P.L. Davies, U. Gather, M. Meise, D.Mergel, T. Mildenberger.
Additional Code by T. Bernholt and T. Hofmeister
Maintainer: T. Mildenberger
DESCRIPTION | 26 ++++++++------
R/fitint.r | 6 +--
man/baselinefit.Rd | 6 ++-
man/diffractogram.Rd | 6 ++-
man/diffractometry-package.Rd | 9 +++-
man/indiumoxide.Rd | 6 ++-
man/pkdecomp.Rd | 5 ++
man/pkdecompint.Rd | 5 ++
src/Cbaselinefit.c | 10 ++---
src/MaxSubsequenceMod.cpp | 77 +-----------------------------------------
src/p7fit.c | 14 ++-----
11 files changed, 61 insertions(+), 109 deletions(-)
Path: /cran/updated | permanent link
Title: A Tcl/Tk GUI for the functions in the ca package
Diff between caGUI versions 0.1-3 dated 2010-03-01 and 0.1-4 dated 2010-03-05
More information about caGUI at CRAN
Description: A Graphical User Interface (GUI) for computation and
visualization of simple, multiple and joint correspondence
analysis with the ca package.
Author: Angelos Markos
Maintainer: Angelos Markos
DESCRIPTION | 8 +++---
R/caGUI.r | 73 ++++++++----------------------------------------------------
2 files changed, 14 insertions(+), 67 deletions(-)
Path: /cran/updated | permanent link
Title: Truncated Multivariate Normal and Student t Distribution
Diff between tmvtnorm versions 1.0-1 dated 2010-03-04 and 1.0-2 dated 2010-03-05
More information about tmvtnorm at CRAN
Description: Random number generation for the truncated multivariate
normal and Student t distribution. Computes probabilities,
quantiles and densities, including one-dimensional and
bivariate marginal densities. Computes first and second moments
(i.e. mean and covariance matrix) for the double-truncated
multinormal case.
Author: Stefan Wilhelm
Maintainer: Stefan Wilhelm
DESCRIPTION | 8 ++++----
R/rtmvt.R | 13 ++++++++++++-
man/rtmvt.Rd | 4 ++--
release-notes.txt | 6 ++++++
4 files changed, 24 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: integrative mixture of experts
Diff between integrativeME versions 1.1 dated 2009-10-14 and 1.2 dated 2010-03-05
More information about integrativeME at CRAN
Description: Mixture of experts models (Jacobs et al., 1991) were
introduced to account for nonlinearities and other complexities
in the data. It is based on a divide-and-conquer strategy.
Mixture of experts are of interest due to their wide
applicability and the advantages of fast learning via the
expectation-maximization (EM) algorithm. We have extended and
implemented mixture of experts to combine categorical clinical
factors and continuous microarray data in a binary
classification framework to analyze cancer studies. To provide
a hybrid signature of clinical factors and gene markers, we
propose to apply different gene selection procedures as a first
step.
Author: Kim-Anh Le Cao
Maintainer: Kim-Anh Le Cao
integrativeME-1.1/integrativeME/copying |only
integrativeME-1.2/integrativeME/DESCRIPTION | 8 +++----
integrativeME-1.2/integrativeME/R/MEcont.R |only
integrativeME-1.2/integrativeME/R/integrativeME.R | 21 +++++++++++++++----
integrativeME-1.2/integrativeME/R/kmeans.R |only
integrativeME-1.2/integrativeME/R/kmeans.init.R | 7 +++++-
integrativeME-1.2/integrativeME/man/MEfunctions.Rd | 4 +++
integrativeME-1.2/integrativeME/man/integrativeME.Rd | 4 ++-
integrativeME-1.2/integrativeME/man/kmeansME.Rd |only
integrativeME-1.2/integrativeME/src/hybrid1.f |only
integrativeME-1.2/integrativeME/src/mecont.f |only
integrativeME-1.2/integrativeME/src/meindep.f | 2 -
12 files changed, 35 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
Title: Efficient selection of undirected graphical models for
high-dimensional datasets
Diff between gRapHD versions 0.1.5 dated 2010-01-20 and 0.1.6 dated 2010-03-05
More information about gRapHD at CRAN
Description: gRapHD is designed for efficient selection of
high-dimensional undirected graphical models. The package
provides tools for selecting trees, forests and decomposable
models minimizing information criteria such as AIC or BIC, and
for displaying the independence graphs of the models. It has
also some useful tools for analysing graphical structures. It
supports the use of discrete, continuous, or both types of
variables.
Author: Gabriel Coelho Goncalves de Abreu
Maintainer: Gabriel Coelho Goncalves de Abreu
DESCRIPTION | 6
R/functions.r | 136 +++++++++++++++--
man/minForest.Rd | 7
man/modelDim.rd | 10 -
man/plot.gRapHD.rd | 4
src/findEd.c | 409 +++++++++++++++++------------------------------------
src/minForest.c | 20 +-
7 files changed, 277 insertions(+), 315 deletions(-)
Path: /cran/updated | permanent link
Title: Dendrochronology Program Library in R
Diff between dplR versions 1.2.8 dated 2010-02-28 and 1.2.9 dated 2010-03-05
More information about dplR at CRAN
Description: This package contains functions for performing some
standard tree-ring analyses.
Author: Andy Bunn with contributions from Mikko Korpela, Franco Biondi,
and Christain Zang
Maintainer: Andy Bunn
DESCRIPTION | 8 -
R/detrend.series.R | 118 ++++++++++++--------
R/ffcsaps.R | 294 +++++++++++++++-----------------------------------
man/combine.rwl.Rd | 2
man/detrend.series.Rd | 2
man/dplR-package.Rd | 7 -
man/ffcsaps.Rd | 9 -
man/gp.d2pith.Rd | 2
man/gp.dbh.Rd | 2
man/gp.po.Rd | 2
man/gp.rwl.Rd | 2
src/readloop.c | 17 +-
12 files changed, 190 insertions(+), 275 deletions(-)
Path: /cran/updated | permanent link
Title: Global optimization by differential evolution
Diff between DEoptim versions 2.0-3 dated 2009-11-29 and 2.0-4 dated 2010-03-05
More information about DEoptim at CRAN
Description: This package provides the DEoptim function which performs
global optimization by differential evolution.
Author: David Ardia and Katharine Mullen
Maintainer: Katharine Mullen
DESCRIPTION | 6 +-
NEWS | 10 +++
R/DEoptim.R | 15 +++--
data |only
man/DEoptim.control.Rd | 42 ++++++++++++---
src/de4_0.c | 137 +++++++++++++++++++++++++++++++------------------
src/evaluate.c | 2
7 files changed, 145 insertions(+), 67 deletions(-)
Path: /cran/updated | permanent link
Title: Calculates parameters of the seawater carbonate system
Diff between seacarb versions 2.3.1 dated 2010-01-26 and 2.3.2 dated 2010-03-05
More information about seacarb at CRAN
Description: Calculates parameters of the seawater carbonate system
Author: Heloise Lavigne and Jean-Pierre Gattuso. Portions of code
and/or corrections were contributed by Jean-Marie Epitalon,
Bernard Gentili, Andreas Hofmann, Jim Orr, Aurelien Proye, and
Karline Soetaert
Maintainer: Jean-Pierre Gattuso
seacarb-2.3.1/seacarb/R/carb.R |only
seacarb-2.3.2/seacarb/ChangeLog | 410 ++++++++++++++++++------------------
seacarb-2.3.2/seacarb/DESCRIPTION | 8
seacarb-2.3.2/seacarb/R/K1.R | 55 ++++
seacarb-2.3.2/seacarb/R/K2.R | 55 ++++
seacarb-2.3.2/seacarb/R/Kf.R | 29 ++
seacarb-2.3.2/seacarb/R/buffer.R | 3
seacarb-2.3.2/seacarb/R/carb.r |only
seacarb-2.3.2/seacarb/R/kconv.R | 2
seacarb-2.3.2/seacarb/R/oa.R | 2
seacarb-2.3.2/seacarb/R/pCa.R | 2
seacarb-2.3.2/seacarb/R/pHinsi.r | 2
seacarb-2.3.2/seacarb/R/pTA.R | 2
seacarb-2.3.2/seacarb/R/pgas.R | 2
seacarb-2.3.2/seacarb/R/pmix.R | 2
seacarb-2.3.2/seacarb/R/ppH.R | 2
seacarb-2.3.2/seacarb/R/psi.R | 2
seacarb-2.3.2/seacarb/man/K1.Rd | 21 +
seacarb-2.3.2/seacarb/man/K2.Rd | 22 +
seacarb-2.3.2/seacarb/man/Kf.Rd | 13 -
seacarb-2.3.2/seacarb/man/Ks.Rd | 7
seacarb-2.3.2/seacarb/man/buffer.Rd | 33 ++
seacarb-2.3.2/seacarb/man/carb.Rd | 30 ++
seacarb-2.3.2/seacarb/man/kconv.Rd | 10
seacarb-2.3.2/seacarb/man/oa.Rd | 27 ++
seacarb-2.3.2/seacarb/man/pCa.Rd | 32 ++
seacarb-2.3.2/seacarb/man/pHinsi.Rd | 30 ++
seacarb-2.3.2/seacarb/man/pTA.Rd | 30 ++
seacarb-2.3.2/seacarb/man/pgas.Rd | 33 ++
seacarb-2.3.2/seacarb/man/pmix.Rd | 31 ++
seacarb-2.3.2/seacarb/man/ppH.Rd | 30 ++
seacarb-2.3.2/seacarb/man/psi.Rd | 29 ++
32 files changed, 662 insertions(+), 294 deletions(-)
Path: /cran/updated | permanent link
Title: A Laboratory for Recursive Partytioning
Diff between party versions 0.9-9992 dated 2010-02-26 and 0.9-9993 dated 2010-03-05
More information about party at CRAN
Description: A computational toolbox for recursive partitioning. The
core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems,
including nominal, ordinal, numeric, censored as well as
multivariate response variables and arbitrary measurement
scales of the covariates. Based on conditional inference trees,
cforest() provides an implementation of Breiman's random
forests. The function mob() implements an algorithm for
recursive partitioning based on parametric models (e.g. linear
models, GLMs or survival regression) employing parameter
instability tests for split selection. Extensible functionality
for visualizing tree-structured regression models is available.
Author: Torsten Hothorn, Kurt Hornik, Carolin Strobl and Achim Zeileis
Maintainer: Torsten Hothorn
DESCRIPTION | 8 -
NEWS | 5
inst/doc/MOB.pdf | 14 +-
inst/doc/party.pdf |binary
inst/documentation/html/Classes_8c.html | 6
inst/documentation/html/Classes_8c_source.html | 2
inst/documentation/html/Classes_8h.html | 6
inst/documentation/html/Classes_8h_source.html | 2
inst/documentation/html/Convenience_8c.html | 2
inst/documentation/html/Convenience_8c_source.html | 2
inst/documentation/html/Convenience_8h.html | 2
inst/documentation/html/Convenience_8h_source.html | 2
inst/documentation/html/Distributions_8c.html | 2
inst/documentation/html/Distributions_8c_source.html | 2
inst/documentation/html/Distributions_8h.html | 2
inst/documentation/html/Distributions_8h_source.html | 2
inst/documentation/html/IndependenceTest_8c.html | 4
inst/documentation/html/IndependenceTest_8c_source.html | 2
inst/documentation/html/IndependenceTest_8h.html | 4
inst/documentation/html/IndependenceTest_8h_source.html | 2
inst/documentation/html/LinearStatistic_8c.html | 2
inst/documentation/html/LinearStatistic_8c_source.html | 2
inst/documentation/html/LinearStatistic_8h.html | 2
inst/documentation/html/LinearStatistic_8h_source.html | 2
inst/documentation/html/Node_8c.html | 4
inst/documentation/html/Node_8c_source.html | 2
inst/documentation/html/Node_8h.html | 4
inst/documentation/html/Node_8h_source.html | 2
inst/documentation/html/Predict_8c.html | 2
inst/documentation/html/Predict_8c_source.html | 2
inst/documentation/html/Predict_8h.html | 2
inst/documentation/html/Predict_8h_source.html | 2
inst/documentation/html/RandomForest_8c.html | 4
inst/documentation/html/RandomForest_8c_a4f54420cb561055a4e545f7e1359fb87_cgraph.map | 2
inst/documentation/html/RandomForest_8c_a4f54420cb561055a4e545f7e1359fb87_cgraph.md5 | 2
inst/documentation/html/RandomForest_8c_source.html | 4
inst/documentation/html/S3Classes_8c.html | 2
inst/documentation/html/S3Classes_8c_source.html | 2
inst/documentation/html/S3Classes_8h.html | 2
inst/documentation/html/S3Classes_8h_source.html | 2
inst/documentation/html/Splits_8c.html | 2
inst/documentation/html/Splits_8c_source.html | 2
inst/documentation/html/Splits_8h.html | 2
inst/documentation/html/Splits_8h_source.html | 2
inst/documentation/html/SurrogateSplits_8c.html | 4
inst/documentation/html/SurrogateSplits_8c_source.html | 2
inst/documentation/html/SurrogateSplits_8h.html | 4
inst/documentation/html/SurrogateSplits_8h_source.html | 2
inst/documentation/html/TestStatistic_8c.html | 2
inst/documentation/html/TestStatistic_8c_source.html | 2
inst/documentation/html/TestStatistic_8h.html | 2
inst/documentation/html/TestStatistic_8h_source.html | 2
inst/documentation/html/TreeGrow_8c.html | 2
inst/documentation/html/TreeGrow_8c_source.html | 2
inst/documentation/html/TreeGrow_8h.html | 2
inst/documentation/html/TreeGrow_8h_source.html | 2
inst/documentation/html/Utils_8c.html | 54 +++++---
inst/documentation/html/Utils_8c_a98f2de1eb2ad7315b48e7e2d9e7a829c_cgraph.map |only
inst/documentation/html/Utils_8c_a98f2de1eb2ad7315b48e7e2d9e7a829c_cgraph.md5 |only
inst/documentation/html/Utils_8c_a98f2de1eb2ad7315b48e7e2d9e7a829c_cgraph.png |only
inst/documentation/html/Utils_8c_aaec073990f0281325ebe4e1c08bca3ba_cgraph.map |only
inst/documentation/html/Utils_8c_aaec073990f0281325ebe4e1c08bca3ba_cgraph.md5 |only
inst/documentation/html/Utils_8c_aaec073990f0281325ebe4e1c08bca3ba_cgraph.png |only
inst/documentation/html/Utils_8c_source.html | 62 +++++-----
inst/documentation/html/Utils_8h.html | 31 +++--
inst/documentation/html/Utils_8h_a98f2de1eb2ad7315b48e7e2d9e7a829c_cgraph.map |only
inst/documentation/html/Utils_8h_a98f2de1eb2ad7315b48e7e2d9e7a829c_cgraph.md5 |only
inst/documentation/html/Utils_8h_a98f2de1eb2ad7315b48e7e2d9e7a829c_cgraph.png |only
inst/documentation/html/Utils_8h_source.html | 4
inst/documentation/html/dir_6c30642956b040afcd6ed9c9ec492c91.html | 2
inst/documentation/html/dirs.html | 2
inst/documentation/html/files.html | 2
inst/documentation/html/globals.html | 2
inst/documentation/html/globals_0x62.html | 2
inst/documentation/html/globals_0x63.html | 6
inst/documentation/html/globals_0x67.html | 2
inst/documentation/html/globals_0x68.html | 2
inst/documentation/html/globals_0x69.html | 2
inst/documentation/html/globals_0x6c.html | 2
inst/documentation/html/globals_0x6d.html | 2
inst/documentation/html/globals_0x6e.html | 2
inst/documentation/html/globals_0x70.html | 2
inst/documentation/html/globals_0x71.html | 2
inst/documentation/html/globals_0x72.html | 4
inst/documentation/html/globals_0x73.html | 2
inst/documentation/html/globals_0x74.html | 2
inst/documentation/html/globals_0x75.html | 2
inst/documentation/html/globals_defs.html | 2
inst/documentation/html/globals_func.html | 6
inst/documentation/html/globals_func_0x67.html | 2
inst/documentation/html/globals_func_0x68.html | 2
inst/documentation/html/globals_func_0x69.html | 2
inst/documentation/html/globals_func_0x6c.html | 2
inst/documentation/html/globals_func_0x6d.html | 2
inst/documentation/html/globals_func_0x6e.html | 2
inst/documentation/html/globals_func_0x70.html | 2
inst/documentation/html/globals_func_0x72.html | 4
inst/documentation/html/globals_func_0x73.html | 2
inst/documentation/html/globals_func_0x75.html | 2
inst/documentation/html/globals_vars.html | 2
inst/documentation/html/graph_legend.html | 2
inst/documentation/html/main.html | 2
inst/documentation/html/mvt_8f.html | 2
inst/documentation/html/mvt_8f_source.html | 2
inst/documentation/html/mvt_8h.html | 2
inst/documentation/html/mvt_8h_source.html | 2
inst/documentation/html/pages.html | 2
inst/documentation/html/party_8h.html | 8 -
inst/documentation/html/party_8h_source.html | 2
inst/documentation/html/todo.html | 2
src/RandomForest.c | 2
src/Utils.c | 16 +-
src/Utils.h | 2
113 files changed, 235 insertions(+), 191 deletions(-)
Path: /cran/updated | permanent link
Title: Model-Based Boosting
Diff between mboost versions 2.0-1 dated 2010-03-01 and 2.0-2 dated 2010-03-05
More information about mboost at CRAN
Description: Functional gradient descent algorithm (boosting) for
optimizing general risk functions utilizing component-wise
(penalised) least squares estimates or regression trees as
base-learners for fitting generalized linear, additive and
interaction models to potentially high-dimensional data.
Author: Torsten Hothorn, Peter Buehlmann, Thomas Kneib, Matthias Schmid
and Benjamin Hofner
Maintainer: Torsten Hothorn
DESCRIPTION | 10 +++++-----
NEWS | 21 +++++++++++++++------
R/btree.R | 2 +-
R/helpers.R | 6 +-----
inst/CHANGES | 21 +++++++++++++++------
inst/doc/SurvivalEnsembles.pdf |binary
inst/doc/mboost_illustrations.pdf |binary
man/mboost_package.Rd | 4 ++--
tests/bugfixes.R | 22 ++++++++++++++++++++++
tests/bugfixes.Rout.save | 22 ++++++++++++++++++++++
10 files changed, 83 insertions(+), 25 deletions(-)
Path: /cran/updated | permanent link
Title: Estimate inverse probability weights.
Diff between ipw versions 1.0-2 dated 2010-02-14 and 1.0-3 dated 2010-03-05
More information about ipw at CRAN
Description: Estimate inverse probability weights. These are typically
used to perform inverse probability weighting (IPW) to fit a
marginal structural model (MSM), to estimate causal effects
from observational data. Both data from point treatment
situations and longitudinal studies can be used.
Author: Willem M. van der Wal
Maintainer: Willem M. van der Wal
ipw-1.0-2/ipw/data/healthdat.rda |only
ipw-1.0-2/ipw/man/healthdat.Rd |only
ipw-1.0-3/ipw/DESCRIPTION | 9 +++--
ipw-1.0-3/ipw/man/basdat.Rd | 2 -
ipw-1.0-3/ipw/man/haartdat.Rd | 2 -
ipw-1.0-3/ipw/man/ipwplot.Rd | 6 +--
ipw-1.0-3/ipw/man/ipwpoint.Rd | 64 ++++++++++++++++++---------------------
ipw-1.0-3/ipw/man/ipwtm.Rd | 58 ++++-------------------------------
ipw-1.0-3/ipw/man/timedat.Rd | 2 -
ipw-1.0-3/ipw/man/tstartfun.Rd | 4 +-
10 files changed, 51 insertions(+), 96 deletions(-)
Path: /cran/updated | permanent link