Wed, 18 Jan 2017

Package TLMoments updated to version 0.6.3.1 with previous version 0.6.3 dated 2017-01-16

Title: Calculate TL-Moments and Convert Them to Distribution Parameters
Description: Calculates empirical TL-moments (trimmed L-moments) of arbitrary order and trimming, and converts them to distribution parameters.
Author: Jona Lilienthal
Maintainer: Jona Lilienthal <lilienthal@statistik.tu-dortmund.de>

Diff between TLMoments versions 0.6.3 dated 2017-01-16 and 0.6.3.1 dated 2017-01-18

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More information about TLMoments at CRAN
Permanent link

Package shotGroups updated to version 0.7.3 with previous version 0.7.2 dated 2016-09-21

Title: Analyze Shot Group Data
Description: Analyzes shooting data with respect to group shape, precision, and accuracy. This includes graphical methods, descriptive statistics, and inference tests using standard, but also non-parametric and robust statistical methods. Implements distributions for radial error in bivariate normal variables. Works with files exported by OnTarget PC/TDS or Taran, as well as with custom data files in text format. Supports inference from range statistics like extreme spread. Includes a set of web-based graphical user interfaces.
Author: Daniel Wollschlaeger
Maintainer: Daniel Wollschlaeger <dwoll@kuci.org>

Diff between shotGroups versions 0.7.2 dated 2016-09-21 and 0.7.3 dated 2017-01-18

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More information about shotGroups at CRAN
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Package rtweet updated to version 0.4.0 with previous version 0.3.7 dated 2016-11-15

Title: Collecting Twitter Data
Description: An implementation of calls designed to extract and organize Twitter data via Twitter's REST and stream APIs. Functions formulate and send API requests, convert response objects to more user friendly data structures---e.g., data frames---and provide some aesthetically pleasing visualizations for exploring the data.
Author: Michael W. Kearney [aut, cre]
Maintainer: Michael W. Kearney <mkearney@ku.edu>

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More information about rtweet at CRAN
Permanent link

Package RSelenium updated to version 1.7.0 with previous version 1.6.2 dated 2016-12-02

Title: R Bindings for 'Selenium WebDriver'
Description: Provides a set of R bindings for the 'Selenium 2.0 WebDriver' (see <https://seleniumhq.github.io/docs/wd.html> for more information) using the 'JsonWireProtocol' (see <https://github.com/SeleniumHQ/selenium/wiki/JsonWireProtocol> for more information). 'Selenium 2.0 WebDriver' allows driving a web browser natively as a user would either locally or on a remote machine using the Selenium server it marks a leap forward in terms of web browser automation. Selenium automates web browsers (commonly referred to as browsers). Using RSelenium you can automate browsers locally or remotely.
Author: John Harrison [aut, cre] (R package RSelenium)
Maintainer: John Harrison <johndharrison0@gmail.com>

Diff between RSelenium versions 1.6.2 dated 2016-12-02 and 1.7.0 dated 2017-01-18

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Package rpostgis updated to version 1.1.1 with previous version 1.1.0 dated 2017-01-06

Title: R Interface to a 'PostGIS' Database
Description: Provides an interface between R and 'PostGIS'-enabled 'PostgreSQL' databases to transparently transfer spatial data. Both vector (points, lines, polygons) and raster data are supported in read and write modes. Also provides convenience functions to execute common procedures in 'PostgreSQL/PostGIS'.
Author: Mathieu Basille [aut], David Bucklin [aut, cre]
Maintainer: David Bucklin <dbucklin@ufl.edu>

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Package isdparser updated to version 0.2.0 with previous version 0.1.0 dated 2016-11-03

Title: Parse 'NOAA' Integrated Surface Data Files
Description: Tools for parsing 'NOAA' Integrated Surface Data ('ISD') files, described at <https://www.ncdc.noaa.gov/isd>. Data includes for example, wind speed and direction, temperature, cloud data, sea level pressure, and more. Includes data from approximately 35,000 stations worldwide, though best coverage is in North America/Europe/Australia. Data is stored as variable length ASCII character strings, with most fields optional. Included are tools for parsing entire files, or individual lines of data.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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Package immer updated to version 0.7-0 with previous version 0.6-0 dated 2016-10-28

Title: Item Response Models for Multiple Ratings
Description: Implements some item response models for multiple ratings, including the hierarchical rater model, conditional maximum likelihood estimation of linear logistic partial credit model and a wrapper function to the commercial FACETS program.
Author: Alexander Robitzsch [aut, cre], Jan Steinfeld [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>

Diff between immer versions 0.6-0 dated 2016-10-28 and 0.7-0 dated 2017-01-18

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Package gapfill updated to version 0.9.5 with previous version 0.9.3 dated 2016-05-04

Title: Fill Missing Values in Satellite Data
Description: Tools to fill missing values in satellite data and to develop new gap-fill algorithms. The methods are tailored to data (images) observed at equally-spaced points in time. The package is illustrated with MODIS NDVI data.
Author: Florian Gerber
Maintainer: Florian Gerber <florian.gerber@math.uzh.ch>

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Package thregI updated to version 1.0.2 with previous version 1.0.1 dated 2016-03-14

Title: Threshold Regression for Interval Censored Data with Cure-Rate or without Cure-Rate Model
Description: Fit a threshold regression model for Interval Censored Data based on the first-hitting-time of a boundary by the sample path of a Wiener diffusion process. The threshold regression methodology is well suited to applications involving survival and time-to-event data.
Author: Man-Hua Chen
Maintainer: Man-Hua Chen <mchen@mail.tku.edu.tw>

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Package RQGIS updated to version 0.2.0 with previous version 0.1.0 dated 2016-08-15

Title: Integrating R with QGIS
Description: Establishes an interface between R and 'QGIS', i.e. it allows the user to access 'QGIS' functionalities from the R console. It achieves this by using the 'QGIS' Python API via the command line. Hence, RQGIS extends R's statistical power by the incredible vast geo-functionality of 'QGIS' (including also 'GDAL', 'SAGA'- and 'GRASS'-GIS among other third-party providers). This in turn creates a powerful environment for advanced and innovative (geo-)statistical geocomputing. 'QGIS' is licensed under GPL version 2 or greater and is available from <http://www.qgis.org/en/site/>.
Author: Jannes Muenchow [aut, cre], Patrick Schratz [aut]
Maintainer: Jannes Muenchow <jannes.muenchow@uni-jena.de>

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Package RKEEL updated to version 1.1.18 with previous version 1.1.17 dated 2017-01-17

Title: Using Keel in R Code
Description: KEEL is a popular Java software for a large number of different knowledge data discovery tasks. This package takes the advantages of KEEL and R, allowing to use KEEL algorithms in simple R code. The implemented R code layer between R and KEEL makes easy both using KEEL algorithms in R as implementing new algorithms for 'RKEEL' in a very simple way. It includes more than 100 algorithms for classification, regression and preprocess, which allows a more complete experimentation process. For more information about KEEL, see <http://www.keel.es/>.
Author: Jose M. Moyano [aut, cre], Luciano Sanchez Ramos [aut], Oliver Sanchez Marin [ctb]
Maintainer: Jose M. Moyano <i02momuj@uco.es>

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Package rgho updated to version 1.0.1 with previous version 1.0.0 dated 2016-11-08

Title: Access WHO Global Health Observatory Data from R
Description: Access WHO Global Health Observatory (<http://www.who.int/gho/>) data from R via the Athena web service (<http://apps.who.int/gho/data/node.resources.api>), an application program interface providing a simple query interface to the World Health Organization's data and statistics content.
Author: Antoine Filipovic-Pierucci [aut,cre]
Maintainer: Antoine Filipovic-Pierucci <pierucci@gmail.com>

Diff between rgho versions 1.0.0 dated 2016-11-08 and 1.0.1 dated 2017-01-18

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Package rAmCharts updated to version 2.1.3 with previous version 2.1.2 dated 2016-12-20

Title: JavaScript Charts API Tool
Description: API for using 'AmCharts' Library. Based on 'htmlwidgets', it provides a global architecture to generate 'JavaScript' source code for charts. Most of classes in the library have their equivalent in R with S4 classes; for those classes, not all properties have been referenced but can easily be added in the constructors. Complex properties (e.g. 'JavaScript' object) can be passed as named list. See examples at <http:// datastorm- open.github.io/ introduction_ramcharts/>. and <http://www.amcharts.com/> for more information about the library. The package includes the free version of 'AmCharts' Library. Its only limitation is a small link to the web site displayed on your charts. If you enjoy this library, do not hesitate to refer to this page <http://www.amcharts.com/online-store/> to purchase a licence, and thus support its creators and get a period of Priority Support. See also <http:// www.amcharts.com/about/> for more information about 'AmCharts' company.
Author: Jeffery Petit [aut, cre], Antanas Marcelionis [aut, cph] ('AmCharts' library in th directory htmlwidgets/lib/amcharts, refer to http://www.amcharts.com/), Benoit Thieurmel [aut, ctb], Elena Salette [aut, ctb], Titouan Robert [aut, ctb]
Maintainer: Jeffery Petit <jeffery.petit@datastorm.fr>

Diff between rAmCharts versions 2.1.2 dated 2016-12-20 and 2.1.3 dated 2017-01-18

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Package precrec updated to version 0.6.2 with previous version 0.6.1 dated 2016-11-22

Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics) curves.
Author: Takaya Saito [aut, cre], Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>

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Package Power2Stage updated to version 0.4-5 with previous version 0.4-3 dated 2015-11-26

Title: Power and Sample-Size Distribution of 2-Stage Bioequivalence Studies
Description: Contains functions to obtain the operational characteristics of bioequivalence studies with 2-stage designs (TSD) via simulations.
Author: Detlew Labes [aut, cre], Helmut Schuetz [ctb]
Maintainer: Detlew Labes <DetlewLabes@gmx.de>

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Package nopaco updated to version 0.99.7 with previous version 0.99.4 dated 2017-01-13

Title: Non-Parametric Concordance Coefficient: A Non-Parametric Concordance Test
Description: A non-parametric test for multi-observer concordance and differences between concordances in (un)balanced data.
Author: Rowan Kuiper [cre, aut], Remco Hoogenboezem [aut], Sjoerd Huisman [ctb], google-sparsehash@googlegroups.com [aut, cph] (Copyright by Google Inc. as mentioned in inst/COPYRIGHTS, applies to all the files in the src/densehash directory)
Maintainer: Rowan Kuiper <r.kuiper.emc@gmail.com>

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Package HH updated to version 3.1-34 with previous version 3.1-32 dated 2016-06-22

Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.
Author: Richard M. Heiberger
Maintainer: Richard M. Heiberger <rmh@temple.edu>

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Package compareDF updated to version 1.1.0 with previous version 1.0.0 dated 2016-03-07

Title: Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure
Description: Compares two dataframes which have the same column structure to show the rows that have changed. Also gives a git style diff format to quickly see what has changes in addition to summary statistics.
Author: Alex Joseph [aut, cre]
Maintainer: Alex Joseph <alexsanjoseph@gmail.com>

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Package cba updated to version 0.2-18 with previous version 0.2-17 dated 2016-06-04

Title: Clustering for Business Analytics
Description: Implements clustering techniques such as Proximus and Rock, utility functions for efficient computation of cross distances and data manipulation.
Author: Christian Buchta and Michael Hahsler
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>

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Package betapart updated to version 1.4 with previous version 1.3 dated 2013-12-12

Title: Partitioning Beta Diversity into Turnover and Nestedness Components
Description: Functions to compute pair-wise dissimilarities (distance matrices) and multiple-site dissimilarities, separating the turnover and nestedness-resultant components of taxonomic (incidence and abundance based), functional and phylogenetic beta diversity.
Author: Andres Baselga, David Orme, Sebastien Villeger, Julien De Bortoli and Fabien Leprieur
Maintainer: Andres Baselga <andres.baselga@usc.es>

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Package backports updated to version 1.0.5 with previous version 1.0.4 dated 2016-10-24

Title: Reimplementations of Functions Introduced Since R-3.0.0
Description: Implementations of functions which have been introduced in R since version 3.0.0. The backports are conditionally exported which results in R resolving the function names to the version shipped with R (if available) and uses the implemented backports as fallback. This way package developers can make use of the new functions without worrying about the minimum required R version.
Author: Michel Lang <michellang@gmail.com>
Maintainer: Michel Lang <michellang@gmail.com>

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Package arulesSequences updated to version 0.2-17 with previous version 0.2-16 dated 2016-08-01

Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences. Provides interfaces to the C++ implementation of cSPADE by Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>

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Package AdMit updated to version 2.1.2 with previous version 2.1.1 dated 2017-01-13

Title: Adaptive Mixture of Student-t Distributions
Description: Provides functions to perform the fitting of an adaptive mixture of Student-t distributions to a target density through its kernel function as described in Ardia et al. (2009) <doi:10.18637/jss.v029.i03>. The mixture approximation can then be used as the importance density in importance sampling or as the candidate density in the Metropolis-Hastings algorithm to obtain quantities of interest for the target density itself.
Author: David Ardia [aut, cre], Lennart Hoogerheide [ctb], Herman van Dijk [ctb]
Maintainer: David Ardia <david.ardia.ch@gmail.com>

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Package yuima updated to version 1.4.7 with previous version 1.3.6 dated 2016-11-06

Title: The YUIMA Project Package for SDEs
Description: Simulation and Inference for Stochastic Differential Equations.
Author: YUIMA Project Team
Maintainer: Stefano M. Iacus <stefano.iacus@unimi.it>

Diff between yuima versions 1.3.6 dated 2016-11-06 and 1.4.7 dated 2017-01-18

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Package SemiParBIVProbit updated to version 3.8-1 with previous version 3.8 dated 2016-08-18

Title: Semiparametric Copula Regression Models
Description: Routines for fitting several classes of copula regression models, with several types of covariate effects, in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>

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Package RcmdrPlugin.EZR updated to version 1.34 with previous version 1.33 dated 2016-08-29

Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>

Diff between RcmdrPlugin.EZR versions 1.33 dated 2016-08-29 and 1.34 dated 2017-01-18

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Package getCRUCLdata updated to version 0.1.2 with previous version 0.1.1 dated 2017-01-05

Title: Download and Use CRU CL2.0 Climatology Data in R
Description: Provides functions that automate downloading and importing University of East Anglia Climate Research Unit (CRU) CL2.0 climatology data into R, facilitates the calculation of minimum temperature and maximum temperature and formats the data into a tidy data frame or a list of raster stack objects for use in an R session. CRU CL2.0 data are a gridded climatology of 1961-1990 monthly means released in 2002 and cover all land areas (excluding Antarctica) at 10-minute resolution. For more information see the description of the data provided by the University of East Anglia Climate Research Unit, <https://crudata.uea.ac.uk/cru/data/hrg/tmc/readme.txt>.
Author: Adam Sparks [aut, cre]
Maintainer: Adam Sparks <adamhsparks@gmail.com>

Diff between getCRUCLdata versions 0.1.1 dated 2017-01-05 and 0.1.2 dated 2017-01-18

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Tue, 17 Jan 2017

Package h2o updated to version 3.10.2.2 with previous version 3.10.0.8 dated 2016-10-14

Title: R Interface for H2O
Description: R scripting functionality for H2O, the open source math engine for big data that computes parallel distributed machine learning algorithms such as generalized linear models, gradient boosting machines, random forests, and neural networks (deep learning) within various cluster environments.
Author: The H2O.ai team
Maintainer: Tom Kraljevic <tomk@0xdata.com>

Diff between h2o versions 3.10.0.8 dated 2016-10-14 and 3.10.2.2 dated 2017-01-17

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Package cleanr updated to version 1.1.3 with previous version 1.1.2 dated 2016-12-21

Title: Helps You to Code Cleaner
Description: Check your R code for some of the most common layout flaws. Many tried to teach us how to write code less dreadful, be it implicitly as B. W. Kernighan and D. M. Ritchie (1988) <ISBN:0-13-110362-8> in 'The C Programming Language' did, be it explicitly as R.C. Martin (2008) <ISBN:0-13-235088-2> in 'Clean Code: A Handbook of Agile Software Craftsmanship' did. So we should check our code for files too long or wide, functions with too many lines, too wide lines, too many arguments or too many levels of nesting. Note: This is not a static code analyzer like pylint or the like. Checkout https://github.com/jimhester/lintr instead.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <adc-r@arcor.de>

Diff between cleanr versions 1.1.2 dated 2016-12-21 and 1.1.3 dated 2017-01-17

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Package bootnet updated to version 0.4 with previous version 0.3 dated 2016-09-04

Title: Bootstrap Methods for Various Network Estimation Routines
Description: Bootstrap methods to assess accuracy and stability of estimated network structures and centrality indices. Allows for flexible specification of any undirected network estimation procedure in R, and offers default sets for 'qgraph', 'IsingFit', 'IsingSampler', 'glasso', 'huge' and 'parcor' packages.
Author: Sacha Epskamp and Eiko I. Fried
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>

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Package rorutadis updated to version 0.4.2 with previous version 0.4.1 dated 2016-07-13

Title: Robust Ordinal Regression UTADIS
Description: Implementation of Robust Ordinal Regression for multiple criteria value-based sorting with preference information provided in form of possibly imprecise assignment examples, assignment-based pairwise comparisons, and desired class cardinalities [Kadzinski et al. 2015, <doi:10.1016/j.ejor.2014.09.050>].
Author: Krzysztof Ciomek
Maintainer: Krzysztof Ciomek <k.ciomek@gmail.com>

Diff between rorutadis versions 0.4.1 dated 2016-07-13 and 0.4.2 dated 2017-01-17

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Package vegan updated to version 2.4-2 with previous version 2.4-1 dated 2016-09-07

Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Michael Friendly, Roeland Kindt, Pierre Legendre, Dan McGlinn, Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs, Helene Wagner
Maintainer: Jari Oksanen <jari.oksanen@oulu.fi>

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Package RProtoBuf updated to version 0.4.8 with previous version 0.4.7 dated 2016-10-29

Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an efficient yet extensible format. Google uses Protocol Buffers for almost all of its internal 'RPC' protocols and file formats. Additional documentation is available in two included vignettes one of which corresponds to our paper in the Journal of Statistical Software (2016, v71i02). Either version 2 or 3 of the 'Protocol Buffers' 'API' is supported.
Author: Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RProtoBuf versions 0.4.7 dated 2016-10-29 and 0.4.8 dated 2017-01-17

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Package ngram updated to version 3.0.2 with previous version 3.0.1 dated 2016-07-13

Title: Fast n-Gram 'Tokenization'
Description: An n-gram is a sequence of n "words" taken, in order, from a body of text. This is a collection of utilities for creating, displaying, summarizing, and "babbling" n-grams. The 'tokenization' and "babbling" are handled by very efficient C code, which can even be built as its own standalone library. The babbler is a simple Markov chain. The package also offers a vignette with complete example 'workflows' and information about the utilities offered in the package.
Author: Drew Schmidt [aut, cre], Christian Heckendorf [aut]
Maintainer: Drew Schmidt <wrathematics@gmail.com>

Diff between ngram versions 3.0.1 dated 2016-07-13 and 3.0.2 dated 2017-01-17

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Package micropan updated to version 1.1.2 with previous version 1.1.1 dated 2017-01-09

Title: Microbial Pan-Genome Analysis
Description: A collection of functions for computations and visualizations of microbial pan-genomes.
Author: Lars Snipen and Kristian Hovde Liland
Maintainer: Lars Snipen <lars.snipen@nmbu.no>

Diff between micropan versions 1.1.1 dated 2017-01-09 and 1.1.2 dated 2017-01-17

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Package microclass updated to version 1.1 with previous version 1.0.1 dated 2016-09-08

Title: Methods for Taxonomic Classification of Prokaryotes
Description: Functions for assigning 16S sequence data to a taxonomic level in the tree-of-life for prokaryotes.
Author: Kristian Hovde Liland, Hilde Vinje, Lars Snipen
Maintainer: Lars Snipen <lars.snipen@nmbu.no>

Diff between microclass versions 1.0.1 dated 2016-09-08 and 1.1 dated 2017-01-17

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Package BIOdry updated to version 0.4 with previous version 0.3 dated 2016-02-10

Title: Multilevel Modeling of Dendroclimatical Fluctuations
Description: Multilevel ecological data series (MEDS) are sequences of observations ordered according to temporal/spatial hierarchies that are defined by sample designs, with sample variability confined to ecological factors. Dendroclimatic MEDS of tree rings and climate are modeled into normalized fluctuations of tree growth and aridity. Modeled fluctuations (model frames) are compared with Mantel correlograms on multiple levels defined by sample design. Package implementation can be understood by running examples in modelFrame(), and muleMan() functions.
Author: Wilson Lara <wilarhen@gmail.com>, Felipe Bravo <fbravo@pvs.uva.es>
Maintainer: Wilson Lara <wilarhen@gmail.com>

Diff between BIOdry versions 0.3 dated 2016-02-10 and 0.4 dated 2017-01-17

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Package mangoTraining updated to version 1.0-7 with previous version 1.0-6 dated 2015-12-18

Title: Mango Solutions Training Datasets
Description: Datasets designed to be used in conjunction with Mango Solutions training materials and the book SAMS Teach Yourself R in 24 Hours (ISBN: 978-0-672-33848-9).
Author: Mango Solutions <rin24hours@mango-solutions.com>
Maintainer: Aimee Gott <agott@mango-solutions.com>

Diff between mangoTraining versions 1.0-6 dated 2015-12-18 and 1.0-7 dated 2017-01-17

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Package lmSupport updated to version 2.9.8 with previous version 2.9.4 dated 2016-04-20

Title: Support for Linear Models
Description: Provides tools and a consistent interface to support analyses using General, Generalized, and Multi-level Linear Models.
Author: John Curtin <jjcurtin@wisc.edu>
Maintainer: John Curtin <jjcurtin@wisc.edu>

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Package imfr updated to version 0.1.3 with previous version 0.1.2 dated 2016-12-22

Title: Download Data from the International Monetary Fund's Data API
Description: Explore and download data from the International Monetary Fund's data API <http://data.imf.org/>.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>

Diff between imfr versions 0.1.2 dated 2016-12-22 and 0.1.3 dated 2017-01-17

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Package dynBiplotGUI updated to version 1.1.4 with previous version 1.1.3 dated 2015-04-27

Title: Full Interactive GUI for Dynamic Biplot in R
Description: A GUI to solve dynamic biplots and classical biplot. Try matrices of 2-way and 3-way. The GUI can be run in multiple languages.
Author: Jaime Egido [aut, cre]
Maintainer: Jaime Egido <jegido@usal.es>

Diff between dynBiplotGUI versions 1.1.3 dated 2015-04-27 and 1.1.4 dated 2017-01-17

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Package RKEEL updated to version 1.1.17 with previous version 1.1.15 dated 2017-01-11

Title: Using Keel in R Code
Description: KEEL is a popular Java software for a large number of different knowledge data discovery tasks. This package takes the advantages of KEEL and R, allowing to use KEEL algorithms in simple R code. The implemented R code layer between R and KEEL makes easy both using KEEL algorithms in R as implementing new algorithms for 'RKEEL' in a very simple way. It includes more than 100 algorithms for classification, regression and preprocess, which allows a more complete experimentation process. For more information about KEEL, see <http://www.keel.es/>.
Author: Jose M. Moyano [aut, cre], Luciano Sanchez Ramos [aut], Oliver Sanchez Marin [ctb]
Maintainer: Jose M. Moyano <i02momuj@uco.es>

Diff between RKEEL versions 1.1.15 dated 2017-01-11 and 1.1.17 dated 2017-01-17

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Package berryFunctions updated to version 1.14.0 with previous version 1.13.0 dated 2016-12-10

Title: Function Collection Related to Plotting and Hydrology
Description: Draw horizontal histograms, color scattered points by 3rd dimension, enhance date- and log-axis plots, zoom in X11 graphics, trace errors and warnings, use the unit hydrograph in a linear storage cascade, convert lists to data.frames and arrays, fit multiple functions.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>

Diff between berryFunctions versions 1.13.0 dated 2016-12-10 and 1.14.0 dated 2017-01-17

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Package tseries updated to version 0.10-37 with previous version 0.10-36 dated 2016-12-15

Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut], Kurt Hornik [aut, cre], Blake LeBaron [ctb] (BDS test code)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

Diff between tseries versions 0.10-36 dated 2016-12-15 and 0.10-37 dated 2017-01-17

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Package date updated to version 1.2-36 with previous version 1.2-35 dated 2016-12-08

Title: Functions for Handling Dates
Description: Functions for handling dates.
Author: Terry Therneau [aut], Thomas Lumley [trl] (R port), Kjetil Halvorsen [trl] (R port), Kurt Hornik [trl, ctb, cre] (R port)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

Diff between date versions 1.2-35 dated 2016-12-08 and 1.2-36 dated 2017-01-17

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Package chron updated to version 2.3-49 with previous version 2.3-48 dated 2016-12-08

Title: Chronological Objects which can Handle Dates and Times
Description: Provides chronological objects which can handle dates and times.
Author: David James [aut] (S original), Kurt Hornik [aut, trl, cre], Gabor Grothendieck [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package cclust updated to version 0.6-21 with previous version 0.6-20 dated 2015-06-24

Title: Convex Clustering Methods and Clustering Indexes
Description: Convex Clustering methods, including K-means algorithm, On-line Update algorithm (Hard Competitive Learning) and Neural Gas algorithm (Soft Competitive Learning), and calculation of several indexes for finding the number of clusters in a data set.
Author: Evgenia Dimitriadou [aut], Kurt Hornik [ctb, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package tabplot updated to version 1.3-1 with previous version 1.3 dated 2016-03-26

Title: Tableplot, a Visualization of Large Datasets
Description: A tableplot is a visualisation of a (large) dataset with a dozen of variables, both numeric and categorical. Each column represents a variable and each row bin is an aggregate of a certain number of records. Numeric variables are visualized as bar charts, and categorical variables as stacked bar charts. Missing values are taken into account. Also supports large 'ffdf' datasets from the 'ff' package.
Author: Martijn Tennekes and Edwin de Jonge
Maintainer: Martijn Tennekes <mtennekes@gmail.com>

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Package rstanarm updated to version 2.14.1 with previous version 2.13.1 dated 2016-11-20

Title: Bayesian Applied Regression Modeling via Stan
Description: Estimates pre-compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. Users specify models via the customary R syntax with a formula and data.frame plus some additional arguments for priors.
Author: Jonah Gabry [aut], Trustees of Columbia University [cph], R Core Deveopment Team [cph] (R/stan_aov.R), Douglas Bates [cph] (R/pp_data.R), Martin Maechler [cph] (R/pp_data.R), Ben Bolker [cph] (R/pp_data.R), Steve Walker [cph] (R/pp_data.R), Brian Ripley [cph] (R/stan_aov.R, R/stan_polr.R), William Venables [cph] (R/stan_polr.R), Ben Goodrich [cre, aut]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

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Package OpenMx updated to version 2.7.4 with previous version 2.7.3 dated 2017-01-14

Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications as things that can be generated and manipulated programmatically. Structural equation models may be specified with reticular action model matrices or paths, linear structural relations matrices or paths, or directly in matrix algebra. Fit functions include full information maximum likelihood, maximum likelihood, and weighted least squares. Example models include confirmatory factor, multiple group, mixture distribution, categorical threshold, modern test theory, differential equations, state space, and many others.
Author: Steven M. Boker [aut], Michael C. Neale [aut], Hermine H. Maes [aut], Michael J. Wilde [ctb], Michael Spiegel [aut], Timothy R. Brick [aut], Ryne Estabrook [aut], Timothy C. Bates [aut], Paras Mehta [ctb], Timo von Oertzen [ctb], Ross J. Gore [aut], Michael D. Hunter [aut], Daniel C. Hackett [ctb], Julian Karch [ctb], Andreas M. Brandmaier [ctb], Joshua N. Pritikin [aut, cre], Mahsa Zahery [aut], Robert M. Kirkpatrick [aut], Yang Wang [ctb], Charles Driver [ctb], Massachusetts Institute of Technology [cph], S. G. Johnson [cph], Association for Computing Machinery [cph], Dieter Kraft [cph], Stefan Wilhelm [cph], Manjunath B G [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>

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 R/MxSaturatedModel.R                                                      |   67 +---
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Package normalr updated to version 0.0.3 with previous version 0.0.2 dated 2017-01-09

Title: Normalisation of Multiple Variables in Large-Scale Datasets
Description: The robustness of many of the statistical techniques, such as factor analysis, applied in the social sciences rests upon the assumption of item-level normality. However, when dealing with real data, these assumptions are often not met. The Box-Cox transformation (Box & Cox, 1964) <http://www.jstor.org/stable/2984418> provides an optimal transformation for non-normal variables. Yet, for large datasets of continuous variables, its application in current software programs is cumbersome with analysts having to take several steps to normalise each variable. We present an R package 'normalr' that enables researchers to make convenient optimal transformations of multiple variables in datasets. This R package enables users to quickly and accurately: (1) anchor all of their variables at 1.00, (2) select the desired precision with which the optimal lambda is estimated, (3) apply each unique exponent to its variable, (4) rescale resultant values to within their original X1 and X(n) ranges, and (5) provide original and transformed estimates of skewness, kurtosis, and other inferential assessments of normality.
Author: Kevin Chang [aut, cre], Matthew Courtney [aut]
Maintainer: Kevin Chang <k.chang@auckland.ac.nz>

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Package icamix updated to version 1.0.5 with previous version 1.0.4 dated 2015-10-22

Title: Estimation of ICA Mixture Models
Description: The icamix package provides R functions as well as a C++ library which facilitate the estimation of ICA mixture models. We have developed and implemented the NSMM-ICA algorithm that currently integrates npEM and Fast-ICA for non-parametric estimation of ICA mixture models. We will continue to build in algorithms that interweave the EM step with other types of ICA techniques.
Author: Xiaotian Zhu, David R. Hunter
Maintainer: Xiaotian Zhu <xzhu@natera.com>

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Package highcharter updated to version 0.5.0 with previous version 0.4.0 dated 2016-07-14

Title: A Wrapper for the 'Highcharts' Library
Description: A wrapper for the 'Highcharts' library including shortcut functions to plot R objects. 'Highcharts' <http://www.highcharts.com/> is a charting library offering numerous chart types with a simple configuration syntax.
Author: Joshua Kunst [aut, cre], Nuno Agostinho [ctb] (hchart.survfit, densities and hc_add_series_scatter), Eduardo Flores [ctb] (First version hc_add_series_df_tidy), Dean Kilfoyle [ctb] (First version hc_add_series_boxplot), Adline Dsilva [ctb] (First version Matrix heatmap)
Maintainer: Joshua Kunst <jbkunst@gmail.com>

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Package clusrank updated to version 0.5-2 with previous version 0.5-1 dated 2017-01-01

Title: Wilcoxon Rank Sum Test for Clustered Data
Description: Non-parametric tests (Wilcoxon rank sum test and Wilcoxon signed rank test) for clustered data.
Author: Yujing Jiang [aut, cre], Mei-Ling Ting Lee [ctb], Jun Yan [ctb]
Maintainer: Yujing Jiang <yujing.jiang@uconn.edu>

Diff between clusrank versions 0.5-1 dated 2017-01-01 and 0.5-2 dated 2017-01-17

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Package bayesianETAS updated to version 1.0.3 with previous version 1.0 dated 2016-12-14

Title: Bayesian Estimation of the ETAS Model for Earthquake Occurrences
Description: The Epidemic Type Aftershock Sequence (ETAS) model is one of the best-performing methods for modeling and forecasting earthquake occurrences. This package implements Bayesian estimation routines to draw samples from the full posterior distribution of the model parameters, given an earthquake catalog. The paper on which this package is based is Gordon J. Ross - Bayesian Estimation of the ETAS Model for Earthquake Occurrences (2016), available from the below URL.
Author: Gordon J. Ross
Maintainer: Gordon J. Ross <gordon@gordonjross.co.uk>

Diff between bayesianETAS versions 1.0 dated 2016-12-14 and 1.0.3 dated 2017-01-17

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Mon, 16 Jan 2017

Package selectiveInference updated to version 1.2.2 with previous version 1.2.0 dated 2016-06-13

Title: Tools for Post-Selection Inference
Description: New tools for post-selection inference, for use with forward stepwise regression, least angle regression, the lasso, and the many means problem. The lasso function implements Gaussian, logistic and Cox survival models.
Author: Ryan Tibshirani, Rob Tibshirani, Jonathan Taylor, Joshua Loftus, Stephen Reid
Maintainer: Rob Tibshirani <tibs@stanford.edu>

Diff between selectiveInference versions 1.2.0 dated 2016-06-13 and 1.2.2 dated 2017-01-16

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Package Peptides updated to version 1.1.2 with previous version 1.1.1 dated 2015-11-27

Title: Calculate Indices and Theoretical Properties of Protein Sequences
Description: Calculate physicochemical properties and indices from amino-acid sequences of peptides and proteins. Include also the option to read and plot output files from the 'GROMACS' molecular dynamics package.
Author: Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Maintainer: Daniel Osorio <daniel.osorio@correo.uis.edu.co>

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Package limSolve updated to version 1.5.5.2 with previous version 1.5.5.1 dated 2014-11-03

Title: Solving Linear Inverse Models
Description: Functions that (1) find the minimum/maximum of a linear or quadratic function: min or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(a_i*x_i) subject to equality constraints Ex=f and/or inequality constraints Gx>=h, (2) sample an underdetermined- or overdetermined system Ex=f subject to Gx>=h, and if applicable Ax~=b, (3) solve a linear system Ax=B for the unknown x. It includes banded and tridiagonal linear systems. The package calls Fortran functions from 'LINPACK'.
Author: Karline Soetaert [aut, cre], Karel Van den Meersche [aut], Dick van Oevelen [aut], LAPACK authors [cph]
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>

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Package lgtdl updated to version 1.1.4 with previous version 1.1.3 dated 2014-08-10

Title: A Set of Methods for Longitudinal Data Objects
Description: A very simple implementation of a class for longitudinal data.
Author: R. Gentleman
Maintainer: Arthur Allignol <arthur.allignol@uni-ulm.de>

Diff between lgtdl versions 1.1.3 dated 2014-08-10 and 1.1.4 dated 2017-01-16

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Package lawstat updated to version 3.1 with previous version 3.0 dated 2015-07-07

Title: Tools for Biostatistics, Public Policy, and Law
Description: Statistical tests widely utilized in biostatistics, public policy, and law. Along with the well-known tests for equality of means and variances, randomness, measures of relative variability etc, the package contains new robust tests of symmetry, omnibus and directional tests of normality, and their graphical counterparts such as Robust QQ plot; a robust trend tests for variances etc. All implemented tests and methods are illustrated by simulations and real-life examples from legal statistics, economics, and biostatistics.
Author: Joseph L. Gastwirth [aut], Yulia R. Gel [aut], W. L. Wallace Hui [aut], Vyacheslav Lyubchich [aut, cre], Weiwen Miao [aut], Kimihiro Noguchi [aut]
Maintainer: Vyacheslav Lyubchich <lyubchic@umces.edu>

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Package KODAMA updated to version 1.4 with previous version 1.3 dated 2016-12-19

Title: Knowledge Discovery by Accuracy Maximization
Description: An unsupervised and semi-supervised learning algorithm that performs feature extraction from noisy and high-dimensional data.
Author: Stefano Cacciatore, Leonardo Tenori, Claudio Luchinat, Phillip R. Bennett, and David A. MacIntyre
Maintainer: Stefano Cacciatore <tkcaccia@gmail.com>

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Package globals updated to version 0.8.0 with previous version 0.7.2 dated 2017-01-09

Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown") objects in R expressions by code inspection using various strategies, e.g. conservative or liberal. The objective of this package is to make it as simple as possible to identify global objects for the purpose of exporting them in distributed compute environments.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

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Package gets updated to version 0.10 with previous version 0.9 dated 2016-10-03

Title: General-to-Specific (GETS) Modelling and Indicator Saturation Methods
Description: Automated General-to-Specific (GETS) modelling of the mean and variance of a regression, and indicator saturation methods for detecting and testing for structural breaks in the mean.
Author: Genaro Sucarrat [aut, cre], Felix Pretis [aut], James Reade [aut]
Maintainer: Genaro Sucarrat <genaro.sucarrat@bi.no>

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Package DSsim updated to version 1.1.0 with previous version 1.0.8 dated 2016-11-07

Title: Distance Sampling Simulations
Description: Performs distance sampling simulations.It repeatedly generates instances of a user defined population within a given survey region, generates realisations of a survey design (currently these must be generated using Distance software in advance <http://distancesampling.org/>) and simulates the detection process. The data are then analysed so that the results can be compared for accuracy and precision across all replications. This will allow users to select survey designs which will give them the best accuracy and precision given their expectations about population distribution. Any uncertainty in population distribution or population parameters can be included by running the different survey designs for a number of different population descriptions. An example simulation can be found in the help file for make.simulation.
Author: Laura Marshall <lhm@st-and.ac.uk>
Maintainer: Laura Marshall <lhm@st-and.ac.uk>

Diff between DSsim versions 1.0.8 dated 2016-11-07 and 1.1.0 dated 2017-01-16

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Package Cprob updated to version 1.3 with previous version 1.2.4 dated 2014-12-09

Title: The Conditional Probability Function of a Competing Event
Description: Permits to estimate the conditional probability function of a competing event, and to fit, using the temporal process regression or the pseudo-value approach, a proportional-odds model to the conditional probability function (or other models by specifying another link function). See <doi:10.1111/j.1467-9876.2010.00729.x>.
Author: Arthur Allignol
Maintainer: Arthur Allignol <arthur.allignol@uni-ulm.de>

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Package BTLLasso updated to version 0.1-5 with previous version 0.1-4 dated 2016-12-02

Title: Modelling Heterogeneity in Paired Comparison Data
Description: Performs 'BTLLasso', a method to include different types of variables in paired comparison models and, therefore, to allow for heterogeneity between subjects. Variables can be subject-specific, object-specific and subject-object-specific and can have an influence on the attractiveness/strength of the objects. Suitable L1 penalty terms are used to cluster certain effects and to reduce the complexity of the models.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther@stat.uni-muenchen.de>

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Package BIFIEsurvey updated to version 1.12-0 with previous version 1.11-0 dated 2016-10-18

Title: Tools for Survey Statistics in Educational Assessment
Description: Contains tools for survey statistics (especially in educational assessment) for datasets with replication designs (jackknife, bootstrap, replicate weights). Descriptive statistics, linear and logistic regression, path models for manifest variables with measurement error correction and two-level hierarchical regressions for weighted samples are included. Statistical inference can be conducted for multiply imputed datasets and nested multiply imputed datasets. This package is developed by BIFIE (Federal Institute for Educational Research, Innovation and Development of the Austrian School System; Salzburg, Austria).
Author: BIFIE
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>

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Package configr updated to version 0.0.3 with previous version 0.0.2 dated 2017-01-15

Title: An Implementation of Parsing and Writing Configuration File (JSON/INI/YAML)
Description: Implements the YAML parser, JSON parser and INI parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'.
Author: Jianfeng Li [aut, cre]
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>

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Package SqlRender updated to version 1.2.0 with previous version 1.1.7 dated 2016-08-16

Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into different SQL dialects. These dialects include Sql Server, Oracle, PostgreSql, Amazon RedShift, and Microsoft PDW.
Author: Martijn J. Schuemie [aut, cre], Marc A. Suchard [aut],
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>

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Package rprojroot updated to version 1.2 with previous version 1.1 dated 2016-10-29

Title: Finding Files in Project Subdirectories
Description: Robust, reliable and flexible paths to files below a project root. The 'root' of a project is defined as a directory that matches a certain criterion, e.g., it contains a certain regular file.
Author: Kirill Müller [aut, cre]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>

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Package radir updated to version 1.0.2 with previous version 1.0.1 dated 2015-10-22

Title: Inverse-Regression Estimation of Radioactive Doses
Description: Radioactive doses estimation using individual chromosomal aberrations information. See Higueras M, Puig P, Ainsbury E, Rothkamm K. (2015) <DOI:10.1098/rspa.2014.0588>.
Author: David Moriña (Catalan Institute of Oncology), Manuel Higueras (Newcastle University) and Pedro Puig (Universitat Autònoma de Barcelona)
Maintainer: David Moriña Soler <david.morina@uab.cat>

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Package dlnm updated to version 2.3.2 with previous version 2.2.6 dated 2016-05-10

Title: Distributed Lag Non-Linear Models
Description: Collection of functions for distributed lag linear and non-linear models.
Author: Antonio Gasparrini [aut, cre], Ben Armstrong [aut], Fabian Scheipl [ctb]
Maintainer: Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>

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Package PubMedWordcloud updated to version 0.3.3 with previous version 0.3.2 dated 2014-10-15

Title: 'Pubmed' Word Clouds
Description: Create a word cloud using the abstract of publications from 'Pubmed'.
Author: Felix Yanhui Fan <nolanfyh@gmail.com>
Maintainer: Felix Yanhui Fan <nolanfyh@gmail.com>

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Package mvoutlier updated to version 2.0.8 with previous version 2.0.6 dated 2015-01-30

Title: Multivariate Outlier Detection Based on Robust Methods
Description: Various Methods for Multivariate Outlier Detection.
Author: Peter Filzmoser <P.Filzmoser@tuwien.ac.at> and Moritz Gschwandtner <e0125439@student.tuwien.ac.at>
Maintainer: P. Filzmoser <P.Filzmoser@tuwien.ac.at>

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Package matconv updated to version 0.3.2 with previous version 0.3.0 dated 2016-01-13

Title: A Code Converter from the Matlab/Octave Language to R
Description: Transferring over a code base from Matlab to R is often a repetitive and inefficient use of time. This package provides a translator for Matlab / Octave code into R code. It does some syntax changes, but most of the heavy lifting is in the function changes since the languages are so similar. Options for different data structures and the functions that can be changed are given. The Matlab code should be mostly in adherence to the standard style guide but some effort has been made to accommodate different number of spaces and other small syntax issues. This will not make the code more R friendly and may not even run afterwards. However, the rudimentary syntax, base function and data structure conversion is done quickly so that the maintainer can focus on changes to the design structure.
Author: Siddarta Jairam [aut, cre], David Hiebeler [ctb]
Maintainer: Siddarta Jairam <sidjsb@gmail.com>

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Sun, 15 Jan 2017

Package ziphsmm updated to version 1.0.1 with previous version 1.0.0 dated 2017-01-14

Title: Zero-Inflated Poisson Hidden (Semi-)Markov Models
Description: Fit zero-inflated Poisson hidden (semi-)Markov models with or without covariates by directly maximizing the log likelihood function. Multiple starting values should be used to avoid local minima.
Author: Zekun (Jack) Xu, Ye Liu
Maintainer: Zekun (Jack) Xu <zekunxu@gmail.com>

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Package TMB updated to version 1.7.6 with previous version 1.7.5 dated 2016-11-21

Title: Template Model Builder: A General Random Effect Tool Inspired by 'ADMB'
Description: With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines 'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph], Brad Bell [cph], Hans Skaug [ctb], Arni Magnusson [ctb], Casper Berg [ctb], Anders Nielsen [ctb], Martin Maechler [ctb], Theo Michelot [ctb], Mollie Brooks [ctb], Alex Forrence [ctb], Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>

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Package recmap updated to version 0.5.16 with previous version 0.5.4 dated 2016-07-24

Title: Compute the Rectangular Statistical Cartogram
Description: Provides an interface and a C++ implementation of the RecMap MP2 construction heuristic (see 'citation("recmap")' for details). This algorithm draws maps according to a given statistical value (e.g. election results, population or epidemiological data). The basic idea of the RecMap algorithm is that each map region (e.g. different countries) is represented by a rectangle. The area of each rectangle represents the statistical value given as input (maintain zero cartographic error). Documentation about RecMap is provided by a vignette included in this package.
Author: Christian Panse
Maintainer: Christian Panse <Christian.Panse@gmail.com>

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Package peakRAM updated to version 1.0.2 with previous version 1.0.1 dated 2016-12-04

Title: Monitor the Total and Peak RAM Used by an Expression or Function
Description: When working with big data sets, RAM conservation is critically important. However, it is not always enough to just monitor the size of the objects created. So-called "copy-on-modify" behavior, characteristic of R, means that some expressions or functions may require an unexpectedly large amount of RAM overhead. For example, replacing a single value in a matrix duplicates that matrix in the back-end, making this task require twice as much RAM as that used by the matrix itself. This package makes it easy to monitor the total and peak RAM used so that developers can quickly identify and eliminate RAM hungry code.
Author: Thomas Quinn [aut, cre]
Maintainer: Thomas Quinn <contacttomquinn@gmail.com>

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Package msaenet updated to version 2.1 with previous version 2.0 dated 2017-01-05

Title: Multi-Step Adaptive Estimation Methods for Sparse Regressions
Description: Multi-step adaptive elastic-net (MSAENet) algorithm for feature selection in high-dimensional regressions proposed in Xiao and Xu (2015) <DOI:10.1080/00949655.2015.1016944>, with additional support for multi-step adaptive MCP-net (MSAMNet) and multi-step adaptive SCAD-net (MSASNet) methods.
Author: Nan Xiao [aut, cre]
Maintainer: Nan Xiao <me@nanx.me>

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Package hasseDiagram updated to version 0.1.2 with previous version 0.1.1 dated 2014-07-29

Title: Drawing Hasse Diagram
Description: Drawing Hasse diagram - visualization of transitive reduction of a finite partially ordered set.
Author: Krzysztof Ciomek
Maintainer: Krzysztof Ciomek <k.ciomek@gmail.com>

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Package utility updated to version 1.4 with previous version 1.3 dated 2014-10-14

Title: Construct, Evaluate and Plot Value and Utility Functions
Description: Construct and plot objective hierarchies and associated value and utility functions. Evaluate the values and utilities and visualize the results as colored objective hierarchies or tables. Visualize uncertainty by plotting median and quantile intervals within the nodes of objective hierarchies. Get numerical results of the evaluations in standard R data types for further processing.
Author: Peter Reichert <peter.reichert@eawag.ch> with contributions by Nele Schuwirth <nele.schuwirth@eawag.ch>
Maintainer: Peter Reichert <peter.reichert@eawag.ch>

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Package mhsmm updated to version 0.4.16 with previous version 0.4.14 dated 2014-12-22

Title: Inference for Hidden Markov and Semi-Markov Models
Description: Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences. Suitable for equidistant time series data, with multivariate and/or missing data. Allows user defined emission distributions.
Author: Jared O'Connell <jaredoconnell@gmail.com>, Søren Højsgaard <sorenh@math.aau.dk>
Maintainer: Jared O'Connell <jaredoconnell@gmail.com>

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Package BayesBinMix updated to version 1.4 with previous version 1.3 dated 2016-09-09

Title: Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions
Description: Fully Bayesian inference for estimating the number of clusters and related parameters to heterogeneous binary data.
Author: Panagiotis Papastamoulis
Maintainer: Panagiotis Papastamoulis <papapast@yahoo.gr>

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Package Unicode updated to version 9.0.0-1 with previous version 8.0.0-1 dated 2016-03-15

Title: Unicode Data and Utilities
Description: Data from Unicode 9.0.0 and related utilities.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package OAIHarvester updated to version 0.2-2 with previous version 0.2-1 dated 2016-08-21

Title: Harvest Metadata Using OAI-PMH v2.0
Description: Harvest metadata using the Open Archives Initiative Protocol for Metadata Harvesting (OAI-PMH) version 2.0.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package sourceR updated to version 1.0.0 with previous version 0.2.0 dated 2016-06-21

Title: Fits a Non-Parametric Bayesian Source Attribution Model
Description: Implements a non-parametric source attribution model to attribute cases of disease to sources in Bayesian framework with source and type effects. Type effects are clustered using a Dirichlet Process. Multiple times and locations are supported.
Author: Poppy Miller [aut, cre, cph], Chris Jewell [aut], Jonathan Marshall [ctb], Nigel French [ctb]
Maintainer: Poppy Miller <p.miller@lancaster.ac.uk>

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Package naivebayes updated to version 0.9.1 with previous version 0.9.0 dated 2017-01-05

Title: High Performance Implementation of the Naive Bayes Algorithm
Description: High performance implementation of the Naive Bayes algorithm.
Author: Michal Majka
Maintainer: Michal Majka <michalmajka@hotmail.com>

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Package funtimes updated to version 3.0 with previous version 2.2 dated 2016-04-27

Title: Functions for Time Series Analysis
Description: Includes non-parametric estimators and tests for time series analysis. The functions are to test for presence of possibly non-monotonic trends and for synchronism of trends in multiple time series, using modern bootstrap techniques and robust non-parametric difference-based estimators.
Author: Vyacheslav Lyubchich; Yulia R. Gel; Calvin Chu; Xingyu Wang
Maintainer: Vyacheslav Lyubchich <lyubchic@umces.edu>

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Package clue updated to version 0.3-53 with previous version 0.3-52 dated 2016-12-02

Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre], Walter Böhm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Sat, 14 Jan 2017

Package rscorecard updated to version 0.3.1 with previous version 0.2.8 dated 2016-10-03

Title: A Method to Download Department of Education College Scorecard Data
Description: A method to download Department of Education College Scorecard data using the public API. It is based on the dplyr model of piped commands to select and filter data in a single chained function call. An API key from the U.S. Department of Education is required.
Author: Benjamin Skinner [aut, cre]
Maintainer: Benjamin Skinner <b.skinner@vanderbilt.edu>

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Package Rcpp updated to version 0.12.9 with previous version 0.12.8 dated 2016-11-17

Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see 'citation("Rcpp")' for details on these last two.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou, Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package RWekajars updated to version 3.9.1-1 with previous version 3.9.0-1 dated 2016-05-04

Title: R/Weka Interface Jars
Description: External jars required for package 'RWeka'.
Author: Kurt Hornik [aut, cre], University of Waikato [ctb, cph] (Weka Java library)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package RWeka updated to version 0.4-30 with previous version 0.4-29 dated 2016-06-13

Title: R/Weka Interface
Description: An R interface to Weka (Version 3.9.1). Weka is a collection of machine learning algorithms for data mining tasks written in Java, containing tools for data pre-processing, classification, regression, clustering, association rules, and visualization. Package 'RWeka' contains the interface code, the Weka jar is in a separate package 'RWekajars'. For more information on Weka see <http://www.cs.waikato.ac.nz/ml/weka/>.
Author: Kurt Hornik [aut, cre], Christian Buchta [ctb], Torsten Hothorn [ctb], Alexandros Karatzoglou [ctb], David Meyer [ctb], Achim Zeileis [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package prodlim updated to version 1.5.9 with previous version 1.5.7 dated 2015-12-19

Title: Product-Limit Estimation for Censored Event History Analysis
Description: Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>

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Package MCDA updated to version 0.0.16 with previous version 0.0.15 dated 2017-01-09

Title: Functions to Support the Multicriteria Decision Aiding Process
Description: Functions which can be useful to support the analyst in the Multicriteria Decision Aiding (MCDA) process involving multiple, conflicting criteria.
Author: Patrick Meyer, Sébastien Bigaret, Richard Hodgett, Alexandru-Liviu Olteanu
Maintainer: Patrick Meyer <patrick.meyer@telecom-bretagne.eu>

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Package gquad updated to version 2.0-0 with previous version 1.0-0 dated 2015-07-01

Title: Prediction of G Quadruplexes and Other Non-B DNA Motifs
Description: Genomic biology is not limited to the confines of the canonical B- forming DNA duplex, but includes over ten different types of other secondary structures that are collectively termed non-B DNA structures. Of these non-B DNA structures, the G-quadruplexes are highly stable four-stranded structures that are recognized by distinct subsets of nuclear factors. This package provide functions for predicting intramolecular G quadruplexes. In addition, functions for predicting other intramolecular nonB DNA structures are included.
Author: Hannah O. Ajoge
Maintainer: Hannah O. Ajoge <ohuajo@gmail.com>

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Package OpenMx updated to version 2.7.3 with previous version 2.7.2 dated 2017-01-10

Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications as things that can be generated and manipulated programmatically. Structural equation models may be specified with reticular action model matrices or paths, linear structural relations matrices or paths, or directly in matrix algebra. Fit functions include full information maximum likelihood, maximum likelihood, and weighted least squares. Example models include confirmatory factor, multiple group, mixture distribution, categorical threshold, modern test theory, differential equations, state space, and many others.
Author: Steven M. Boker [aut], Michael C. Neale [aut], Hermine H. Maes [aut], Michael J. Wilde [ctb], Michael Spiegel [aut], Timothy R. Brick [aut], Ryne Estabrook [aut], Timothy C. Bates [aut], Paras Mehta [ctb], Timo von Oertzen [ctb], Ross J. Gore [aut], Michael D. Hunter [aut], Daniel C. Hackett [ctb], Julian Karch [ctb], Andreas M. Brandmaier [ctb], Joshua N. Pritikin [aut, cre], Mahsa Zahery [aut], Robert M. Kirkpatrick [aut], Yang Wang [ctb], Charles Driver [ctb], Massachusetts Institute of Technology [cph], S. G. Johnson [cph], Association for Computing Machinery [cph], Dieter Kraft [cph], Stefan Wilhelm [cph], Manjunath B G [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>

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Package iprior updated to version 0.6.3 with previous version 0.6.2 dated 2016-08-21

Title: Linear Regression using I-Priors
Description: Provides methods to perform and analyse I-prior regression models. Estimation is mainly done via an EM algorithm, but there is flexibility in using any optimiser.
Author: Haziq Jamil [aut, cre]
Maintainer: Haziq Jamil <haziq.jamil@gmail.com>

Diff between iprior versions 0.6.2 dated 2016-08-21 and 0.6.3 dated 2017-01-14

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Package fbar updated to version 0.1.23 with previous version 0.1.16 dated 2016-12-19

Title: An Extensible Approach to Flux Balance Analysis
Description: This is a simple package for Flux Balance Analysis and related metabolic modelling techniques. Functions are provided for: parsing models in tabular format, converting parsed metabolic models to input formats for common linear programming solvers, and evaluating and applying gene-protein-reaction mappings. In addition, there are wrappers to parse a model, select a solver, find the metabolic fluxes, and return the results applied to the original model. Compared to other packages in this field, this package puts a much heavier focus on providing reusable components that can be used in the design of new implementation of new techniques, in particular those that involve large parameter sweeps.
Author: Max Conway [aut, cre]
Maintainer: Max Conway <conway.max1@gmail.com>

Diff between fbar versions 0.1.16 dated 2016-12-19 and 0.1.23 dated 2017-01-14

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