Tue, 02 Sep 2014

Package nor1mix updated to version 1.2-0 with previous version 1.1-4 dated 2013-04-19

Title: Normal (1-d) Mixture Models (S3 Classes and Methods)
Description: Onedimensional Normal Mixture Models Classes, for, e.g., density estimation or clustering algorithms research and teaching; providing the widely used Marron-Wand densities. Now fitting to data by ML (Maximum Likelihood) or EM estimation.
Author: Martin Mächler
Maintainer: Martin Maechler

Diff between nor1mix versions 1.1-4 dated 2013-04-19 and 1.2-0 dated 2014-09-02

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 nor1mix-1.2-0/nor1mix/NAMESPACE          |    8 +-
 nor1mix-1.2-0/nor1mix/R/norMix.R         |   97 +++++++++++++++++++++----------
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 nor1mix-1.2-0/nor1mix/tests/MW.R         |   18 ++---
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Package httr updated to version 0.5 with previous version 0.4 dated 2014-07-28

Title: Tools for working with URLs and HTTP
Description: Provides useful tools for working with HTTP. The API is based around http verbs (GET(), POST(), etc) with pluggable components to control the request (authenticate(), add_headers() and so on).
Author: Hadley Wickham [cre, aut, cph], RStudio [cph]
Maintainer: Hadley Wickham

Diff between httr versions 0.4 dated 2014-07-28 and 0.5 dated 2014-09-02

 DESCRIPTION                    |   17 ++--
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Package enviPick updated to version 1.2 with previous version 1.0 dated 2014-07-14

Title: Peak picking for high resolution mass spectrometry data
Description: Sequential partitioning, clustering and peak detection of centroided LC-MS mass spectrometry data (.mzXML). Interactive result and raw data plot.
Author: Martin Loos
Maintainer: Martin Loos

Diff between enviPick versions 1.0 dated 2014-07-14 and 1.2 dated 2014-09-02

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Package synbreed updated to version 0.10-1 with previous version 0.9-7 dated 2013-08-27

Title: Framework for the analysis of genomic prediction data using R
Description: The package was developed within the Synbreed project for synergistic plant and animal breeding (www.synbreed.tum.de). It contains a collection of functions required for genomic prediction in both plant and animal breeding. This covers data processing, data visualization and analysis. All functions are embedded within the framework of a single, unified data object. The implementation is flexible with respect to a wide range of data formats. This research was funded by the German Federal Ministry of Education and Research (BMBF) within the AgroClustEr Synbreed - Synergistic plant and animal breeding (FKZ 0315528A).
Author: Valentin Wimmer, Hans-Juergen Auinger, Theresa Albrecht, Chris-Carolin Schoen with contributions by Larry Schaeffer, Malena Erbe, Ulrike Ober, Christian Reimer, Yvonne Badke and Peter VandeHaar
Maintainer: Valentin Wimmer

Diff between synbreed versions 0.9-7 dated 2013-08-27 and 0.10-1 dated 2014-09-02

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Package prodlim updated to version 1.4.5 with previous version 1.4.3 dated 2014-05-01

Title: Product-limit estimation. Kaplan-Meier and Aalen-Johansson method for censored event history (survival) analysis
Description: Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds

Diff between prodlim versions 1.4.3 dated 2014-05-01 and 1.4.5 dated 2014-09-02

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Package ds updated to version 3.0 with previous version 2.0 dated 2013-07-01

Title: Descriptive Statistics
Description: The package performs various analyzes of descriptive statistics, including correlations
Author: Emmanuel Arnhold
Maintainer: Emmanuel Arnhold

Diff between ds versions 2.0 dated 2013-07-01 and 3.0 dated 2014-09-02

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Package HiClimR updated to version 1.1.4 with previous version 1.1.3 dated 2014-08-28

Title: Hierarchical Climate Regionalization: An Improved Hierarchical Clustering in R for Climate Regionalization
Description: HiClimR package modifies and improves hierarchical clustering in R ('hclust' function in 'stats' library), for climate regionalization. It adds a new clustering method (called, regional linkage) to the set of available methods together with several features including regridding, coarsening spatial resolution, geographic masking, data thresholds, detrending and standardization preprocessing, faster correlation function, hybrid hierarchical clustering, and cluster validation. Badr et. al (2014) describes the regionalization algorithms and data processing tools included in the package and presents a demonstration application in which the package is used to regionalize Africa on the basis of interannual precipitation variability. It is applicable to any correlation-based clustering.
Author: Hamada S. Badr [aut, cre], Benjamin F. Zaitchik [aut], Amin K. Dezfuli [aut]
Maintainer: Hamada S. Badr

Diff between HiClimR versions 1.1.3 dated 2014-08-28 and 1.1.4 dated 2014-09-02

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Package StereoMorph updated to version 1.2.1 with previous version 1.2 dated 2014-08-24

Title: Stereo Camera Calibration and Reconstruction
Description: StereoMorph provides functions for the collection of 3D points and curves using a stereo camera setup.
Author: Aaron Olsen, Annat Haber
Maintainer: Aaron Olsen

Diff between StereoMorph versions 1.2 dated 2014-08-24 and 1.2.1 dated 2014-09-02

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Package sgr updated to version 1.2 with previous version 1.1 dated 2014-06-03

Title: Sample Generation by Replacement
Description: The package for Sample Generation by Replacement simulations. The package can be used to perform fake data analysis according to the sample generation by replacement approach. It includes functions for making simple inferences about discrete/ordinal fake data. The package allows to study the implications of fake data for empirical results.
Author: Massimiliano Pastore & Luigi Lombardi
Maintainer: Massimiliano Pastore

Diff between sgr versions 1.1 dated 2014-06-03 and 1.2 dated 2014-09-02

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Package SCVA updated to version 1.1 with previous version 1.0 dated 2014-01-13

Title: Single-Case Visual Analysis
Description: A package to make graphical representations of single case data and to transform graphical displays back to raw data. The package also includes tools for visually analyzing single-case data, by displaying central location, variability and trend.
Author: Isis Bulte and Patrick Onghena
Maintainer: Marlies Vervloet

Diff between SCVA versions 1.0 dated 2014-01-13 and 1.1 dated 2014-09-02

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Package SCRT updated to version 1.1 with previous version 1.0 dated 2014-01-13

Title: Single-Case Randomization Tests
Description: A package for designing single-case phase, alternation and multiple-baseline experiments, as well as for conducting randomization tests on data gathered by means of such designs.
Author: Isis Bulte and Patrick Onghena
Maintainer: Marlies Vervloet

Diff between SCRT versions 1.0 dated 2014-01-13 and 1.1 dated 2014-09-02

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Package mht updated to version 3.0.11 with previous version 3.00 dated 2014-04-07

Title: Multiple Hypotheses Testing For Variable Selection
Description: Multiple Hypotheses Testing For Variable Selection
Author: F.Rohart
Maintainer: F.Rohart

Diff between mht versions 3.00 dated 2014-04-07 and 3.0.11 dated 2014-09-02

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Package exactmeta updated to version 1.0-2 with previous version 1.0-1 dated 2013-11-24

Title: Exact fixed effect meta analysis
Description: Perform exact fixed effect meta analysis for rare events data without the need of artificial continuity correction.
Author: Yilei Yu and Lu Tian
Maintainer: Lu Tian

Diff between exactmeta versions 1.0-1 dated 2013-11-24 and 1.0-2 dated 2014-09-02

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Package rpg updated to version 1.2 with previous version 1.1 dated 2014-07-29

Title: Easy interface to advanced PostgreSQL features
Description: Allows ad hoc queries and reading and writing data frames to and from a database.
Author: Timothy H. Keitt
Maintainer: Timothy H. Keitt

Diff between rpg versions 1.1 dated 2014-07-29 and 1.2 dated 2014-09-02

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Package R.devices updated to version 2.11.0 with previous version 2.9.2 dated 2014-05-18

Title: Unified handling of graphics devices
Description: This package provides functions for creating plots and image files in a unified way regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default device options as well as scales and aspect ratios are controlled in a uniform way across all device types. Switching output format requires minimal changes in code. This package is ideal for large-scale batch processing, because it will never leave open graphics devices or incomplete image files behind, even on errors or user interrupts.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson

Diff between R.devices versions 2.9.2 dated 2014-05-18 and 2.11.0 dated 2014-09-02

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Mon, 01 Sep 2014

Package Rbitcoin updated to version 0.9.2 with previous version 0.9 dated 2014-04-18

Title: R & bitcoin integration
Description: Utilities related to Bitcoin. Unified markets API interface (bitstamp, kraken, btce, bitmarket). Both public and private API calls. Integration of data structures for all markets. Support SSL. Read Rbitcoin documentation (command: ?btc) for more information.
Author: Jan Gorecki
Maintainer: Jan Gorecki

Diff between Rbitcoin versions 0.9 dated 2014-04-18 and 0.9.2 dated 2014-09-01

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Package RCEIM updated to version 0.2 with previous version 0.1 dated 2013-11-25

Title: RCEIM - R Cross Entropy Inspired Method for Optimization
Description: RCEIM is a package implementing a stochastic heuristic method for performing multidimensional function optimization. The method is inspired in the Cross-Entropy Method. It does not relies on derivatives, neither imposes particularly strong requirements into the function to be optimized. Additionally, it takes profit from multicore processing to enable optimization of time-consuming functions.
Author: Alberto Krone-Martins
Maintainer: Alberto Krone-Martins

Diff between RCEIM versions 0.1 dated 2013-11-25 and 0.2 dated 2014-09-01

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Package geoBayes updated to version 0.1.3 with previous version 0.1.2 dated 2014-08-20

Title: Analysis of geostatistical data using Bayes and empirical Bayes methods
Description: This package provides functions to fit geostatistical data. The data can be continuous, binary or count data and the models implemented are flexible. Conjugate priors are assumed on some parameters while inference on the other parameters can be done through a full Bayesian analysis of by empirical Bayes methods.
Author: Evangelos Evangelou , Vivekananda Roy
Maintainer: Evangelos Evangelou

Diff between geoBayes versions 0.1.2 dated 2014-08-20 and 0.1.3 dated 2014-09-01

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Package e1071 updated to version 1.6-4 with previous version 1.6-3 dated 2014-03-17

Title: Misc Functions of the Department of Statistics (e1071), TU Wien
Description: Functions for latent class analysis, short time Fourier transform, fuzzy clustering, support vector machines, shortest path computation, bagged clustering, naive Bayes classifier, ...
Author: David Meyer [aut, cre], Evgenia Dimitriadou [aut, cph], Kurt Hornik [aut], Andreas Weingessel [aut], Friedrich Leisch [aut], Chih-Chung Chang [ctb, cph] (libsvm C++-code), Chih-Chen Lin [ctb, cph] (libsvm C++-code)
Maintainer: David Meyer

Diff between e1071 versions 1.6-3 dated 2014-03-17 and 1.6-4 dated 2014-09-01

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Package circlize updated to version 0.1.1 with previous version 0.1.0 dated 2014-08-02

Title: Circular visualization in R
Description: circlize implements circular visualization (http://circos.ca/) in R. Due to the natural born feature of R to draw statistical graphics, this package can provide a more general and flexible way to visualize huge information in a circular style.
Author: Zuguang Gu
Maintainer: Zuguang Gu

Diff between circlize versions 0.1.0 dated 2014-08-02 and 0.1.1 dated 2014-09-01

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Package reader updated to version 1.0.4 with previous version 1.0.1 dated 2014-03-01

Title: A suite of functions to flexibly read data from files
Description: A set of functions to simplify reading data from files. The main function, reader(), should read most common R datafile types without needing any parameters except the filename. Other functions provide simple ways of handling file paths and extensions, and automatically detecting file format and structure.
Author: Nicholas Cooper
Maintainer: Nicholas Cooper

Diff between reader versions 1.0.1 dated 2014-03-01 and 1.0.4 dated 2014-09-01

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Package RankAggreg updated to version 0.5 with previous version 0.4-3 dated 2012-07-01

Title: Weighted rank aggregation
Description: This package performs aggregation of ordered lists based on the ranks using several different algorithms: Borda count, Cross-Entropy Monte Carlo algorithm, Genetic algorithm, and a brute force algorithm (for small problems)
Author: Vasyl Pihur , Somnath Datta , Susmita Datta
Maintainer: Vasyl Pihur

Diff between RankAggreg versions 0.4-3 dated 2012-07-01 and 0.5 dated 2014-09-01

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Package NCmisc updated to version 1.1.2 with previous version 1.1 dated 2014-02-27

Title: Miscellaneous general purpose functions
Description: A set of handy functions. Includes: versatile one line progress bar, one line function timer with detailed output, time delay function, text histogram, object preview, CRAN package search, simpler package installer, Linux command install check, a flexible Mode function, top function, simulation of correlated data, and more
Author: Nicholas Cooper
Maintainer: Nicholas Cooper

Diff between NCmisc versions 1.1 dated 2014-02-27 and 1.1.2 dated 2014-09-01

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Package lgarch updated to version 0.5 with previous version 0.4 dated 2014-07-01

Title: Simulation and estimation of log-GARCH models
Description: Simulation and estimation of univariate and multivariate log-GARCH models. The main functions of the package are: lgarchSim, mlgarchSim, lgarch and mlgarch. The first two functions simulate from a univariate and a multivariate log-GARCH model, respectively, whereas the latter two estimate a univariate and multivariate log-GARCH model, respectively. A collection of methods can be applied to objects of both the 'lgarch' and 'mlgarch' types: coef, fitted, logLik, print, residuals, summary and vcov.
Author: Genaro Sucarrat
Maintainer: Genaro Sucarrat

Diff between lgarch versions 0.4 dated 2014-07-01 and 0.5 dated 2014-09-01

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Package GGIR updated to version 1.0-6 with previous version 1.0-4 dated 2014-04-29

Title: GGIR
Description: GGIR is a tool to process multi-day raw acceleration data
Author: Vincent T van Hees [aut, cre], Zhou Fang [ctb], Jing Hua Zhao [ctb]
Maintainer: Vincent T van Hees

Diff between GGIR versions 1.0-4 dated 2014-04-29 and 1.0-6 dated 2014-09-01

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Package agricolae updated to version 1.2-1 with previous version 1.2-0 dated 2014-06-30

Title: Statistical Procedures for Agricultural Research
Description: Agricolae was presented in the thesis "A statistical analysis tool for agricultural research" to obtain the degree of Master on science, mention Systems Engineering, Faculty of Industrial and Systems Engineering, National Engineering University (UNI), Lima-Peru. Original idea, support and data sets came from CIP (International Potato Center). Agricolae offers extensive functionality on experimental design especially for agricultural and plant breeding experiments, which can also be useful for other purposes. It supports planning of lattice, Alpha, Cyclic, Complete Block, Latin Square, Graeco-Latin Squares, augmented block, factorial, split and strip plot designs. There are also various analysis facilities for experimental data, e.g. treatment comparison procedures and several non-parametric tests comparison, biodiversity indexes and consensus cluster.
Author: Felipe de Mendiburu
Maintainer: Felipe de Mendiburu

Diff between agricolae versions 1.2-0 dated 2014-06-30 and 1.2-1 dated 2014-09-01

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Package wordnet updated to version 0.1-10 with previous version 0.1-9 dated 2013-07-29

Title: WordNet Interface
Description: An interface to WordNet using the Jawbone Java API to WordNet. WordNet () is a large lexical database of English. Nouns, verbs, adjectives and adverbs are grouped into sets of cognitive synonyms (synsets), each expressing a distinct concept. Synsets are interlinked by means of conceptual-semantic and lexical relations. Please note that WordNet(R) is a registered tradename. Princeton University makes WordNet available to research and commercial users free of charge provided the terms of their license () are followed, and proper reference is made to the project using an appropriate citation ().
Author: Ingo Feinerer [aut], Kurt Hornik [aut, cre], Mike Wallace [ctb, cph] (Jawbone Java WordNet API library)
Maintainer: Kurt Hornik

Diff between wordnet versions 0.1-9 dated 2013-07-29 and 0.1-10 dated 2014-09-01

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Package traitr updated to version 0.14 with previous version 0.13 dated 2012-01-26

Title: An interface for creating GUIs modeled in part after traits UI module for python.
Description: An interface for creating GUIs modeled in part after the traits UI module for python. The basic design takes advantage of the model-view-controller design pattern. The interface makes basic dialogs quite easy to produce.
Author: John Verzani
Maintainer: John Verzani

Diff between traitr versions 0.13 dated 2012-01-26 and 0.14 dated 2014-09-01

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More information about traitr at CRAN
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Package OpasnetUtils updated to version 1.1.0 with previous version 1.0.0 dated 2013-07-17

Title: Utility functions for dealing with data in Opasnet (www.opasnet.org) environment.
Description: This package is primarily developed for executing open assessments and modeling in Opasnet environment (http://www.opasnet.org). The operating principle of this package is maximum openness and modularity. Variables are defined publicly on wiki pages using wiki inputs/tables, our database and R code. Using any predefined variable is very easy: fetch the variable from our servers (or your own) and evaluate it. Actual evaluation of variables is done lazily by default: when the evaluation of a variable is explicitly called, all variables it is dependent on are evaluated recursively. There are also a couple of impact assessment tools such as GIS functions in the package. To learn more go to \url{http://en.opasnet.org/w/Modelling_in_Opasnet}.
Author: Teemu Rintala, Einari Happonen, Jouni Tuomisto
Maintainer: Teemu Rintala

Diff between OpasnetUtils versions 1.0.0 dated 2013-07-17 and 1.1.0 dated 2014-09-01

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Package mixOmics updated to version 5.0-3 with previous version 5.0-2 dated 2014-08-10

Title: Omics Data Integration Project
Description: The package provide statistical integrative techniques and variants to analyse highly dimensional data sets: regularized CCA and sparse PLS to unravel relationships between two heterogeneous data sets of size (nxp) and (nxq) where the p and q variables are measured on the same samples or individuals n. These data may come from high throughput technologies, such as omics data (e.g. transcriptomics, metabolomics or proteomics data) that require an integrative or joint analysis. However, mixOmics can also be applied to any other large data sets where p + q >> n. rCCA is a regularized version of CCA to deal with the large number of variables. sPLS allows variable selection in a one step procedure and two frameworks are proposed: regression and canonical analysis. Numerous graphical outputs are provided to help interpreting the results. Recent methodological developments include: sparse PLS-Discriminant Analysis, Independent Principal Component Analysis and multilevel analysis using variance decomposition of the data.
Author: Sebastien Dejean, Ignacio Gonzalez, Kim-Anh Le Cao with contributions from Pierre Monget, Jeff Coquery, FangZou Yao, Benoit Liquet, Florian Rohart
Maintainer: Kim-Anh Le Cao

Diff between mixOmics versions 5.0-2 dated 2014-08-10 and 5.0-3 dated 2014-09-01

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More information about mixOmics at CRAN
Permanent link

Package StAMPP updated to version 1.3 with previous version 1.2 dated 2014-03-10

Title: Statistical Analysis of Mixed Ploidy Populations
Description: StAMPP allows users to calculate pairwise Nei's Genetic Distances (Nei 1972), pairwise Fixation Indexes (Fst) (Weir & Cockerham 1984) and also Genomic Relationship matrixes following Yang et al. (2010) in mixed and single ploidy populations. Bootstrapping across loci is implemented during Fst calculation to generate confidence intervals and p-values around pairwise Fst values. StAMPP utilises SNP genotype data of any ploidy level (with the ability to handle missing data) and is coded to utilise multithreading where available to allow efficient analysis of large datasets. StAMPP is able to handle genotype data from genlight objects allowing integration with other packages such adegenet. Please refer to LW Pembleton, NOI Cogan & JW Forster, 2013, Molecular Ecology Resources, 13(5), 946-952. doi:10.1111/1755-0998.12129 for the appropriate citation and user manual. Thank you in advance.
Author: LW Pembleton
Maintainer: LW Pembleton

Diff between StAMPP versions 1.2 dated 2014-03-10 and 1.3 dated 2014-09-01

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More information about StAMPP at CRAN
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Package freqweights updated to version 0.1.1 with previous version 0.1.0 dated 2014-05-21

Title: Working with frequency tables
Description: The frequency of a particular data value is the number of times it occurs. A frequency table is a table of values with their corresponding frequencies. Frequency weights are integer numbers that indicate how many cases each case represents. This package provides some functions to work with such type of collected data.
Author: Emilio Torres-Manzanera
Maintainer: Emilio Torres-Manzanera

Diff between freqweights versions 0.1.0 dated 2014-05-21 and 0.1.1 dated 2014-09-01

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Package FADA updated to version 1.1 with previous version 1.0 dated 2014-07-10

Title: Variable selection for supervised classification in high dimension
Description: The functions provided in the FADA (Factor Adjusted Discriminant Analysis) package aim at performing supervised classification models and variable selection on dependent covariates. The classification procedures are combined with a factor modeling of dependence among covariates. The available procedures are Lasso regularized logistic model (see Friedman et al. (2010)), sparse linear discriminant analysis (see Clemmensen et al. (2011)), shrinkage linear and diagonal discriminant analysis (see M. Ahdesmaki et al. (2010)).
Author: Emeline Perthame (Agrocampus Ouest, Rennes, France), Chloe Friguet (Universite de Bretagne Sud, Vannes, France) and David Causeur (Agrocampus Ouest, Rennes, France)
Maintainer: David Causeur

Diff between FADA versions 1.0 dated 2014-07-10 and 1.1 dated 2014-09-01

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More information about FADA at CRAN
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Package chebpol updated to version 1.3-1367 with previous version 1.3-1040 dated 2013-07-28

Title: Multivariate Chebyshev interpolation
Description: The package contains methods for creating multivariate Chebyshev approximation of functions on a hypercube. Some methods for non-Chebyshev grids are also provided.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research, Oslo, Norway
Maintainer: Simen Gaure

Diff between chebpol versions 1.3-1040 dated 2013-07-28 and 1.3-1367 dated 2014-09-01

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Package RGA updated to version 0.1.2 with previous version 0.1.1 dated 2014-08-20

Title: A Google Analytics API client for R
Description: Provides functions for accessing and retrieving data from the Google Analytics APIs (https://developers.google.com/analytics/). Supports OAuth 2.0 authorization. Package provides access to the Management, Core Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and Metadata APIs. Access to all the Google Analytics accounts which the user has access to. Auto-pagination to return more than 10,000 rows of the results by combining multiple data requests. Also the RGA package provides shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre], Philipp Upravitelev [ctb], Olga Shramko [ctb]
Maintainer: Artem Klevtsov

Diff between RGA versions 0.1.1 dated 2014-08-20 and 0.1.2 dated 2014-09-01

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Package heavy updated to version 0.2-35 with previous version 0.2-3 dated 2013-03-22

Title: Package for robust estimation using heavy-tailed distributions
Description: This package contains functions to perform robust estimation considering heavy-tailed distributions. Currently, the package includes linear regression, linear mixed-effect models, multivariate location and scatter estimation, penalized splines and random variate generation.
Author: Felipe Osorio
Maintainer: Felipe Osorio

Diff between heavy versions 0.2-3 dated 2013-03-22 and 0.2-35 dated 2014-09-01

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More information about heavy at CRAN
Permanent link

Sun, 31 Aug 2014

Package RNetCDF updated to version 1.6.3-1 with previous version 1.6.2-3 dated 2014-06-16

Title: R Interface to NetCDF Datasets
Description: This package provides an interface to Unidata's NetCDF library functions (version 3) and furthermore access to Unidata's UDUNITS calendar conversions. The routines and the documentation follow the NetCDF and UDUNITS C interface, so the corresponding manuals can be consulted for more detailed information.
Author: Pavel Michna
Maintainer: Pavel Michna

Diff between RNetCDF versions 1.6.2-3 dated 2014-06-16 and 1.6.3-1 dated 2014-08-31

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Package ngramr updated to version 1.4.5 with previous version 1.4.3 dated 2014-02-01

Title: Retrieve and plot Google n-gram data
Description: Retrieve and plot word frequencies through time from the Google Ngram Viewer
Author: Sean Carmody
Maintainer: Sean Carmody

Diff between ngramr versions 1.4.3 dated 2014-02-01 and 1.4.5 dated 2014-08-31

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Package chemosensors updated to version 0.7.8 with previous version 0.7.7 dated 2013-10-09

Title: A tool for the design of synthetic experiments in machine olfaction.
Description: This package introduces a software tool for the design of synthetic experiments in machine olfaction. The generator of gas sensor signals can be used in applications related to test and benchmarking of signal processing methods, neuromorphic simulations in machine olfaction and educational tools. A so-called virtual sensor array features unlimited number of sensors, support of multicomponent gas mixtures and full parametric control of the noise in the system. The artificial (virtual) sensor array is inspired from a reference database of seventeen polymeric sensors with concentration profiles for three analytes.
Author: Alexandre Perera-Lluna and Andrey Ziyatdinov
Maintainer: Andrey Ziyatdinov

Diff between chemosensors versions 0.7.7 dated 2013-10-09 and 0.7.8 dated 2014-08-31

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Package chords updated to version 0.90 with previous version 0.67 dated 2012-09-05

Title: Estimation in respondent driven samples.
Description: Maximum likelihood estimation in respondent driven samples.
Author: Jonathan Rosenblatt
Maintainer: Jonathan Rosenblatt

Diff between chords versions 0.67 dated 2012-09-05 and 0.90 dated 2014-08-31

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Package CDM updated to version 3.4-21 with previous version 3.3-24 dated 2014-05-25

Title: Cognitive Diagnosis Modeling
Description: Functions for cognitive diagnosis modeling and multidimensional item response modeling for dichotomous and polytomous data. This package enables the estimation of the DINA and DINO model, the multiple group (polytomous) GDINA model, the multiple choice DINA model, the general diagnostic model (GDM), the multidimensional linear compensatory item response model and the structured latent class model (SLCA).
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch

Diff between CDM versions 3.3-24 dated 2014-05-25 and 3.4-21 dated 2014-08-31

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Package pmg updated to version 0.9-43 with previous version 0.9-42 dated 2010-03-09

Title: Poor Man's GUI
Description: Simple GUI for R using gWidgets.
Author: John Verzani with contributions by Yvonnick Noel
Maintainer: John Verzani

Diff between pmg versions 0.9-42 dated 2010-03-09 and 0.9-43 dated 2014-08-31

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Sat, 30 Aug 2014

Package survivalMPL updated to version 0.1.1 with previous version 0.1.0 dated 2014-04-03

Title: Penalised Maximum Likelihood for Survival Analysis Models
Description: Estimate the regression coefficients and the baseline hazard of proportional hazard Cox models using maximum penalised likelihood. A 'non-parametric' smooth estimate of the baseline hazard function is provided.
Author: Dominique-Laurent Couturier, Jun Ma, Stephane Heritier.
Maintainer: Dominique-Laurent Couturier

Diff between survivalMPL versions 0.1.0 dated 2014-04-03 and 0.1.1 dated 2014-08-30

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Package nsRFA updated to version 0.7-12 with previous version 0.7-11 dated 2013-12-16

Title: Non-supervised Regional Frequency Analysis
Description: A collection of statistical tools for objective (non-supervised) applications of the Regional Frequency Analysis methods in hydrology. The package refers to the index-value method and, more precisely, helps the hydrologist to: (1) regionalize the index-value; (2) form homogeneous regions with similar growth curves; (3) fit distribution functions to the empirical regional growth curves.
Author: Alberto Viglione [aut, cre], Jonathan R. M. Hosking [ctb], Francesco Laio [ctb], Alan Miller [ctb], Eric Gaume [ctb], Olivier Payrastre [ctb], Jose Luis Salinas [ctb], Chi Cong N'guyen [ctb], Karine Halbert [ctb]
Maintainer: Alberto Viglione

Diff between nsRFA versions 0.7-11 dated 2013-12-16 and 0.7-12 dated 2014-08-30

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Package jvmr updated to version 2.11.2.1 with previous version 2.11.1.1 dated 2014-06-25

Title: Integration of R, Java, and Scala
Description: Cross-platform, self-contained, and bi-directional interface between R and Scala, Java, and other JVM-based languages.
Author: David B. Dahl [aut, cre], Scala developers [ctb] (see http://scala-lang.org/), beanshell2 developers [ctb] (see https://code.google.com/p/beanshell2/), jline2 developers [ctb] (see https://github.com/jline/jline2)
Maintainer: David B. Dahl

Diff between jvmr versions 2.11.1.1 dated 2014-06-25 and 2.11.2.1 dated 2014-08-30

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Package frailtypack updated to version 2.7 with previous version 2.6.1 dated 2014-07-23

Title: General Frailty models: shared, joint and nested frailty models with prediction
Description: Frailtypack fits several classes of frailty models using a penalized likelihood estimation on the hazard function but also a parametric estimation. 1) A shared frailty model (with gamma or log-normal frailty distribution) and Cox proportional hazard model. Clustered and recurrent survival times can be studied. 2) Additive frailty models for proportional hazard models with two correlated random effects (intercept random effect with random slope). 3) Nested frailty models for hierarchically clustered data (with 2 levels of clustering) by including two iid gamma random effects. 4) Joint frailty models in the context of joint modelling for recurrent events with terminal event for clustered data or not. Prediction values are available. Left-truncated (not for Joint model), right-censored data, interval-censored data (only for Cox proportional hazard and shared frailty model) and strata are allowed. In each model, the random effects have a gamma distribution, but you can switch to a log-normal in shared and joint models. Now, you can also consider time-varying covariates effects in Cox, shared and joint models. The package includes concordance measures for Cox proportional hazards models and for shared frailty models.
Author: Virginie Rondeau, Juan R. Gonzalez, Yassin Mazroui, Audrey Mauguen, Agnieszka Krol-Listwon, Amadou Diakite and Alexandre Laurent
Maintainer: Virginie Rondeau

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Package Peptides updated to version 1.0 with previous version 0.4 dated 2014-03-26

Title: Calculate indices and theoretical physicochemical properties of peptides and protein sequences
Description: Calculate physicochemical properties and indices from aminoacid sequences of peptides and proteins. Include also utilities for read and plot GROMACS output files .XVG.
Author: Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Maintainer: Daniel Osorio

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Package parsedate updated to version 1.0.3 with previous version 1.0.2 dated 2014-08-28

Title: Recognize and parse dates in various formats, including all ISO 8601 formats
Description: Parse dates automatically, without the need of specifying a format. Currently it includes the git date parser. It can also recognize and parse all ISO 8601 formats.
Author: Gabor Csardi, Linus Torvalds
Maintainer: Gabor Csardi

Diff between parsedate versions 1.0.2 dated 2014-08-28 and 1.0.3 dated 2014-08-30

 DESCRIPTION           |    6 +++---
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 R/parsedate-package.r |    3 +--
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More information about parsedate at CRAN
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Package sirt updated to version 0.47-36 with previous version 0.46-15 dated 2014-08-05

Title: Supplementary Item Response Theory Models
Description: Supplementary item response theory models to complement existing functions in R.
Author: Alexander Robitzsch
Maintainer: Alexander Robitzsch

Diff between sirt versions 0.46-15 dated 2014-08-05 and 0.47-36 dated 2014-08-30

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More information about sirt at CRAN
Permanent link

Package PopGenome updated to version 2.0.9 with previous version 2.0.8 dated 2014-07-31

Title: An Efficient Swiss Army Knife for Population Genomic Analyses
Description: PopGenome is an R-package for Population Genetic & Genomic Analysis
Author: Bastian Pfeifer, Ulrich Wittelsbuerger
Maintainer: Bastian Pfeifer

Diff between PopGenome versions 2.0.8 dated 2014-07-31 and 2.0.9 dated 2014-08-30

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More information about PopGenome at CRAN
Permanent link

Package mcIRT updated to version 0.41 with previous version 0.40 dated 2014-03-15

Title: IRT models for multiple choice items (mcIRT)
Description: This package provides functions to estimate two popular IRT-models: The Nominal Response Model (Bock 1972) and the quite recently developed Nested Logit Model (Suh & Bolt 2010). These are two models to examine multiple-choice items and other multicategorial response formats.
Author: Manuel Reif
Maintainer: Manuel Reif

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Permanent link

Package TDMR updated to version 1.2 with previous version 1.1 dated 2014-06-06

Title: Tuned Data Mining in R
Description: Tuned Data Mining in R (TDMR) performs a complete tuning of a data mining task.
Author: Wolfgang Konen , Patrick Koch
Maintainer: Wolfgang Konen

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Package PP updated to version 0.5 with previous version 0.2-1 dated 2013-12-29

Title: Person Parameter estimation
Description: The PP package includes estimation of (MLE, WLE, MAP, EAP, ROBUST) person parameters for the 1,2,3,4-PL model and the GPCM (generalized partial credit model). The parameters are estimated under the assumption that the item parameters are known and fixed. The package could be useful when items from an itempool/itembank with known item parameters are administered to a new population of testtakers and an ability estimation for every testtaker is needed.
Author: Manuel Reif
Maintainer: Manuel Reif

Diff between PP versions 0.2-1 dated 2013-12-29 and 0.5 dated 2014-08-30

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More information about PP at CRAN
Permanent link

Package RSiteCatalyst updated to version 1.4.0 with previous version 1.3.3 dated 2014-04-12

Title: R Client for Adobe Analytics API v1.4
Description: Functions for accessing the Adobe Analytics Reporting API
Author: Willem Paling, Randy Zwitch & Jowanza Joseph
Maintainer: Randy Zwitch

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Package EpiModel updated to version 1.0.2 with previous version 1.0.1 dated 2014-07-29

Title: Mathematical Modeling of Infectious Disease
Description: Tools for simulating mathematical models of infectious disease. Epidemic model classes include deterministic compartmental models, stochastic individual contact models, and stochastic network models. Disease types include SI, SIR, and SIS epidemics with and without demography, with tools available for expansion to model complex epidemic processes.
Author: Samuel Jenness [cre, aut], Steven M. Goodreau [aut], Martina Morris [aut], Li Wang [ctb]
Maintainer: Samuel Jenness

Diff between EpiModel versions 1.0.1 dated 2014-07-29 and 1.0.2 dated 2014-08-30

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Permanent link

Package sns updated to version 0.9.1 with previous version 0.9 dated 2014-08-25

Title: Stochastic Newton Sampler (SNS)
Description: Multivariate, Markov Chain Monte Carlo sampler for twice differentiable, log-concave probability densities. SNS is a Metropolis-Hastings variant, where the proposal function is a local Gaussian approximation to the density obtained via a second order Taylor expansion around the current point. The mean of the Gaussian proposal is taken as the full Newton-Raphson step from the current point. During burn-in, Newton-Raphson optimization is performed to get close to the mode of the pdf which is unique due to convexity.
Author: Alireza S. Mahani, Asad Hasan, Marshall Jiang, Mansour T.A. Sharabiani
Maintainer: Asad Hasan

Diff between sns versions 0.9 dated 2014-08-25 and 0.9.1 dated 2014-08-30

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Fri, 29 Aug 2014

Package RcmdrPlugin.IPSUR updated to version 0.2-0 with previous version 0.1-8 dated 2012-03-23

Title: An IPSUR Plugin for the R Commander
Description: This package is an R Commander plugin that accompanies IPSUR, an Introduction to Probability and Statistics Using R.
Author: G. Jay Kerns [aut, cre], Theophilus Boye [ctb], Tyler Drombosky [ctb]
Maintainer: G. Jay Kerns

Diff between RcmdrPlugin.IPSUR versions 0.1-8 dated 2012-03-23 and 0.2-0 dated 2014-08-29

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Package mgcv updated to version 1.8-3 with previous version 1.8-2 dated 2014-07-21

Title: Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness estimation
Description: Routines for GAMs and other generalized ridge regression with multiple smoothing parameter selection by GCV, REML or UBRE/AIC. Also GAMMs. Includes a gam() function.
Author: Simon Wood
Maintainer: Simon Wood

Diff between mgcv versions 1.8-2 dated 2014-07-21 and 1.8-3 dated 2014-08-29

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Package extraTrees updated to version 1.0.2 with previous version 1.0.1 dated 2014-08-10

Title: ExtraTrees method
Description: A package implementing ExtraTrees method for classification and regression. Uses Java implementation of the method.
Author: Jaak Simm, Ildefons Magrans de Abril
Maintainer: Jaak Simm

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Package BH updated to version 1.54.0-4 with previous version 1.54.0-3 dated 2014-08-04

Title: Boost C++ header files
Description: Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN package. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel

Diff between BH versions 1.54.0-3 dated 2014-08-04 and 1.54.0-4 dated 2014-08-29

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Package turboEM updated to version 2014.8-1 with previous version 2012.2-1 dated 2012-02-17

Title: A Suite of Convergence Acceleration Schemes for EM, MM and other fixed-point algorithms
Description: Algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM and MM algorithms. It can be used to accelerate any smooth, linearly convergent acceleration scheme. A tutorial style introduction to this package is available in a vignette on the CRAN download page or, when the package is loaded in an R session, with vignette("turboEM").
Author: Jennifer F. Bobb [aut], Ravi Varadhan [aut, cre], Hui Zhao [ctb]
Maintainer: Ravi Varadhan

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Package birk updated to version 1.1 with previous version 1.0 dated 2014-06-25

Title: MA Birk functions
Description: This is a compilation of functions that I found useful to make. It currently includes a unit of measurement conversion function and a standard error function that behaves complementary to sd().
Author: Matthew A Birk
Maintainer: Matthew A Birk

Diff between birk versions 1.0 dated 2014-06-25 and 1.1 dated 2014-08-29

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Package mme updated to version 0.1-5 with previous version 0.1-4 dated 2014-01-05

Title: Multinomial Mixed Effects Models
Description: mme fit Gaussian Multinomial mixed-effects models for small area estimation: Model 1, with one random effect in each category of the response variable; Model 2, introducing independent time effect; Model 3, introducing correlated time effect. mme calculates analytical and parametric bootstrap MSE estimators.
Author: E. Lopez-Vizcaino, M.J. Lombardia and D. Morales
Maintainer: E. Lopez-Vizcaino

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Package FreeSortR updated to version 1.1 with previous version 1.0 dated 2014-07-22

Title: Free Sorting data analysis.
Description: The package FreeSortR provides tools for describing and analysing free sorting data. Main methods are computation of consensus partition and factorial analysis of the dissimilarity matrix between stimuli (using multidimensional scaling approach).
Author: Philippe Courcoux
Maintainer: Philippe Courcoux

Diff between FreeSortR versions 1.0 dated 2014-07-22 and 1.1 dated 2014-08-29

 DESCRIPTION |   10 +++++-----
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Package decompr updated to version 1.2 with previous version 1.1 dated 2014-08-27

Title: Export Decomposition (Wang-Wei-Zhu and source)
Description: The R package "decompr" implements two export decomposition algorithms. Firstly, the Wang-Wei-Zhu (Wang, Wei, and Zhu 2013) algorithm splits bilateral gross exports into 16 value added components. Secondly, the Source decomposition algorithm derives the value added origin of exports by country and industry, which is also based on Wang, Wei, and Zhu (2013).
Author: Bastiaan Quast
Maintainer: Bastiaan Quast

Diff between decompr versions 1.1 dated 2014-08-27 and 1.2 dated 2014-08-29

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Package riverplot updated to version 0.3 with previous version 0.2 dated 2014-02-27

Title: Sankey or ribbon plots
Description: Sankey plots are a type of diagram that is convenient to illustrate how flow of information, resources etc. separates and joins, much like observing how rivers split and merge. For example, they can be used to compare different clusterings.
Author: January Weiner
Maintainer: January Weiner

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Package BayesFactor updated to version 0.9.8 with previous version 0.9.7 dated 2014-02-22

Title: Computation of Bayes factors for common designs
Description: The BayesFactor package is a suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.
Author: Richard D. Morey, Jeffrey N. Rouder, Tahira Jamil
Maintainer: Richard D. Morey

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Package vows updated to version 0.3 with previous version 0.2-1 dated 2013-03-22

Title: Voxelwise semiparametrics
Description: Parametric and semiparametric inference for massively parallel models, i.e., a large number of models with common design matrix, as often occurs with brain imaging data.
Author: Philip Reiss, Yin-Hsiu Chen, Lei Huang, Lan Huo, and Ruixin Tan
Maintainer: Philip Reiss

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Package raincpc updated to version 0.4 with previous version 0.3 dated 2014-08-26

Title: Obtain and Analyze Rainfall Data from the Climate Prediction Center
Description: The Climate Prediction Center's (CPC) rainfall data for the world (1979 to present, 50 km resolution) and the USA (1948 to present, 25 km resolution), is one of the few high quality, long term, observation based, daily rainfall products available for free. Although raw data is available at CPC's ftp site, obtaining, processing and visualizing the data is not straightforward. There are more than 12,000 files for the world and about 24,000 files for the USA. Moreover, file formats and file extensions have not been consistent. This package provides functionality to download, process and visualize over 35 years of global rainfall data and over 65 years of USA rainfall data from CPC.
Author: Gopi Goteti
Maintainer: Gopi Goteti

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Package icamix updated to version 1.0.1 with previous version 1.0 dated 2014-07-02

Title: Estimation of ICA Mixture Models
Description: The icamix package provides R functions as well as a C++ library which facilitate the estimation of ICA mixture models. We have developed and implemented the NSMM-ICA algorithm in the function EMFASTICAALG that currently integrates npEM and Fast-ICA for non-parametric estimation of ICA mixture models.
Author: Xiaotian Zhu, David R. Hunter
Maintainer: Xiaotian Zhu

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Package heatmap3 updated to version 1.0.7 with previous version 1.0.4 dated 2014-06-10

Title: A improved heatmap package
Description: heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerful and convenient features.
Author: Shilin Zhao, Yan Guo, Quanhu Sheng, Yu Shyr
Maintainer: Shilin Zhao

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Package analogue updated to version 0.14-0 with previous version 0.12-0 dated 2013-12-14

Title: Analogue and weighted averaging methods for palaeoecology
Description: Fits Modern Analogue Technique and Weighted Averaging transfer function models for prediction of environmental data from species data, and related methods used in palaeoecology.
Author: Gavin L. Simpson [aut, cre], Jari Oksanen [aut]
Maintainer: Gavin L. Simpson

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Thu, 28 Aug 2014

Package ttScreening updated to version 1.4 with previous version 1.3 dated 2014-02-28

Title: Genome-wide DNA methylation sites screening by use of training and testing samples.
Description: This package utilizes training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.
Author: Meredith Ray, Xin Tong, Hongmei Zhang
Maintainer: Meredith Ray

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Package psychotree updated to version 0.14-0 with previous version 0.13-0 dated 2014-02-03

Title: Recursive Partitioning Based on Psychometric Models
Description: Recursive partitioning based on psychometric models, employing the general MOB algorithm (from package partykit) to obtain Bradley-Terry trees, Rasch trees, rating scale and partial credit trees.
Author: Achim Zeileis [aut, cre], Carolin Strobl [aut], Florian Wickelmaier [aut], Basil Abou El-Komboz [aut], Julia Kopf [aut]
Maintainer: Achim Zeileis

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Package psychotools updated to version 0.3-0 with previous version 0.2-0 dated 2014-02-03

Title: Infrastructure for Psychometric Modeling
Description: Infrastructure for psychometric modeling such as data classes (for item response data and paired comparisons), basic model fitting functions (for Bradley-Terry, Rasch, partial credit, and rating scale models), extractor functions for different types of parameters (item, person, threshold, discrimination), unified inference and visualizations, and various datasets for illustration. Intended as a common lightweight and efficient toolbox for psychometric modeling and a common building block for fitting psychometric mixture models in package "psychomix" and psychometric tree models in package "psychotree".
Author: Achim Zeileis [aut, cre], Carolin Strobl [aut], Florian Wickelmaier [aut], Basil Abou El-Komboz [aut], Julia Kopf [aut]
Maintainer: Achim Zeileis

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Package MGSDA updated to version 1.1 with previous version 1.0 dated 2014-07-08

Title: Multi-Group Sparse Discriminant Analysis
Description: Implements Multi-Group Sparse Discriminant Analysis proposal of 'I.Gaynanova, J.Booth and M.Wells (2014), Simultaneous sparse estimation of canonical vectors in the p>>N setting'
Author: Irina Gaynanova
Maintainer: Irina Gaynanova

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Package corrgram updated to version 1.6 with previous version 1.5 dated 2013-08-29

Title: Plot a correlogram
Description: Calculates correlation of variables and displays the results graphically.
Author: Kevin Wright
Maintainer: Kevin Wright

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Package SQUAREM updated to version 2014.8-1 with previous version 2012.7-1 dated 2012-07-26

Title: Squared extrapolation methods for accelerating fixed-point iterations
Description: Algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM algorithm. It can be used to accelerate any smooth, linearly convergent acceleration scheme. A tutorial style introduction to this package is available in a vignette on the CRAN download page or, when the package is loaded in an R session, with vignette("SQUAREM").
Author: Ravi Varadhan
Maintainer: Ravi Varadhan

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Package Rcapture updated to version 1.4-2 with previous version 1.3-1 dated 2012-05-31

Title: Loglinear Models for Capture-Recapture Experiments
Description: Estimation of abundance and other of demographic parameters for closed populations, open populations and the robust design in capture-recapture experiments using loglinear models.
Author: Louis-Paul Rivest and Sophie Baillargeon
Maintainer: Louis-Paul Rivest

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Package RcmdrPlugin.DoE updated to version 0.12-3 with previous version 0.12-2 dated 2013-08-29

Title: R Commander Plugin for (industrial) Design of Experiments
Description: The package provides a platform-independent GUI for design of experiments. It is implemented as a plugin to the R-Commander, which is a more general graphical user interface for statistics in R based on tcl/tk. DoE functionality can be accessed through the menu Design that is added to the R-Commander menus.
Author: Ulrike Groemping [aut, cre], Fox John [ctb]
Maintainer: Ulrike Groemping

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Package HiClimR updated to version 1.1.3 with previous version 1.1.2 dated 2014-07-27

Title: Hierarchical Climate Regionalization: An Improved Hierarchical Clustering in R for Climate Regionalization
Description: HiClimR package modifies and improves hierarchical clustering in R ('hclust' function in 'stats' library), for climate regionalization. It adds a new clustering method (called, regional linkage) to the set of available methods together with several features including regridding, coarsening spatial resolution, geographic masking, data thresholds, detrending and standardization preprocessing, faster correlation function, hybrid hierarchical clustering, and cluster validation. Badr et. al (2014) describes the regionalization algorithms and data processing tools included in the package and presents a demonstration application in which the package is used to regionalize Africa on the basis of interannual precipitation variability. It is applicable to any correlation-based clustering.
Author: Hamada S. Badr [aut, cre], Benjamin F. Zaitchik [aut], Amin K. Dezfuli [aut]
Maintainer: Hamada S. Badr

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Package compareGroups updated to version 2.0.5 with previous version 2.0.4 dated 2014-05-02

Title: Descriptive analysis by groups
Description: This package is designed to read, interpret, summarise, display and analyse epidemiological data. Can be used to create data summaries for quality control, extensive reports for exploring data, including publication-ready univariate or bivariate tables in plain text HTML and LaTeX, and a figures to quickly visualise the distribution of your data. Depending on the nature of the variable, various statistics are calculated (mean, median, frequencies, incidences) and appropriate tests are performed (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...). The latest version includes functionality for summarising genetic data, and for performing low-level quality control of your database (see radiograph()) to help identify data-entry errors. This version has also been implemented in a web-interface to make this package accessible to non-R-users (see www.comparegroups.eu).
Author: Isaac Subirana, Joan Vila, Héctor Sanz, Gavin Lucas, Judith Peñafiel and David Giménez
Maintainer: Isaac Subirana

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Package Rlabkey updated to version 2.1.125 with previous version 2.1.123 dated 2013-11-04

Title: Data exchange between R and LabKey Server
Description: This package allows an R user to discover, query and modify data in LabKey Server
Author: Peter Hussey
Maintainer: Cory Nathe

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Package effsize updated to version 0.5.2 with previous version 0.5.1 dated 2014-05-21

Title: Efficient effect size computation
Description: This package contains the functions to compute the standardized effect sizes for experiments (Cohen d, Hedges g, Cliff delta, Vargha and Delaney A). The computation algorithms have been optimized to allow efficient computation even with very large data sets.
Author: Marco Torchiano
Maintainer: Marco Torchiano

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Package BioStatR updated to version 2.0.0 with previous version 1.0.4 dated 2012-03-30

Title: Initiation à la Statistique avec R
Description: This packages provides datasets and functions for the book "Initiation à la Statistique avec R", Dunod, 2ed, 2014.
Author: Frederic Bertrand , Myriam Maumy-Bertrand .
Maintainer: Frederic Bertrand

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Package fscaret updated to version 0.8.5.7 with previous version 0.8.5.6 dated 2014-04-14

Title: Automated caret feature selection
Description: Automated feature selection using variety of models provided by caret package
Author: Jakub Szlek , acknowledgments to Aleksander Mendyk, contributions from stackoverflow and r-help@r-project.org mailing list community. Acknowledgments: This work was funded by Poland-Singapore bilateral cooperation project no 2/3/POL-SIN/2012.
Maintainer: Jakub Szlek

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Package trajectories updated to version 0.1-1 with previous version 0.1-0 dated 2014-08-27

Title: Classes and methods for trajectory data
Description: Classes and methods for trajectory data, with nested classes for individual trips, and collections for different entities. Methods include selection, generalization, aggregation, intersection, and plotting.
Author: Edzer Pebesma [cre, aut], Benedikt Klus [aut]
Maintainer: Edzer Pebesma

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Package QuantifQuantile updated to version 1.0 with previous version 0.2 dated 2014-06-13

Title: Estimation of conditional quantiles using optimal quantization
Description: Estimation of conditional quantiles using optimal quantization. Construction of an optimal grid of N quantizers, estimation of conditional quantiles and data driven selection of the size N of the grid. Graphical illustrations for the selection of N and of resulting estimated curves or surfaces when the dimension of the covariate is one or two.
Author: Isabelle Charlier and Davy Paindaveine and Jerome Saracco
Maintainer: Isabelle Charlier

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Package georob updated to version 0.1-5 with previous version 0.1-4 dated 2014-06-02

Title: Robust Geostatistical Analysis of Spatial Data
Description: The georob package provides functions for fitting linear models with spatially correlated errors by robust and Gaussian Restricted Maximum Likelihood and for computing robust and customary point and block kriging predictions, along with utility functions for cross-validation and for unbiased back-transformation of kriging predictions of log-transformed data.
Author: Andreas Papritz [cre, aut], Cornelia Schwierz [ctb]
Maintainer: Andreas Papritz

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Package cheddar updated to version 0.1-626 with previous version 0.1-625 dated 2014-02-26

Title: Analysis and visualisation of ecological communities
Description: Cheddar provides a flexible, extendable representation of an ecological community and a range of functions for analysis and visualisation, focusing on food web, body mass and numerical abundance data. It also allows inter-web comparisons such as examining changes in community structure over environmental, temporal or spatial gradients.
Author: Lawrence Hudson with contributions from Dan Reuman and Rob Emerson
Maintainer: Lawrence Hudson

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Package Bergm updated to version 2.9.1 with previous version 2.9 dated 2014-07-22

Title: Bayesian analysis for exponential random graph models
Description: Set of tools to analyse Bayesian exponential random graph models
Author: Alberto Caimo and Nial Friel
Maintainer: Alberto Caimo

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Package spatstat updated to version 1.38-1 with previous version 1.38-0 dated 2014-08-15

Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, and point patterns on a linear network. Contains about 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported. Parametric models can be fitted to point pattern data using the functions ppm, kppm, slrm similar to glm. Types of models include Poisson, Gibbs, Cox and cluster point processes. Models may involve dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods. Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise, AIC). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley , Rolf Turner and Ege Rubak , with substantial contributions of code by Kasper Klitgaard Berthelsen; Abdollah Jalilian; Marie-Colette van Lieshout; Dominic Schuhmacher; and Rasmus Waagepetersen. Additional contributions by Q.W. Ang; S. Azaele; M. Baddeley; C. Beale; M. Bell; R. Bernhardt; T. Bendtsen; A. Bevan; B. Biggerstaff; L. Bischof; R. Bivand; J.M. Blanco Moreno; F. Bonneu; J. Burgos; S. Byers; Y.M. Chang; J.B. Chen; I. Chernayavsky; Y.C. Chin; B. Christensen; J.-F. Coeurjolly; R. Corria Ainslie; M. de la Cruz; P. Dalgaard; S. Das; P.J. Diggle; P. Donnelly; I. Dryden; S. Eglen; O. Flores; E.D. Ford; P. Forbes; J. Franklin; N. Funwi-Gabga; O. Garcia; A. Gault; M. Genton; J. Gilbey; J. Goldstick; P. Grabarnik; C. Graf; U. Hahn; A. Hardegen; M. Hering; M.B. Hansen; M. Hazelton; J. Heikkinen; K. Hornik; P. Hunziker; R. Ihaka; A. Jammalamadaka; R. John-Chandran; D. Johnson; M. Kuhn; J. Laake; F. Lavancier; T. Lawrence; R.A. Lamb; J. Lee; G.P. Leser; H.T. Li; G. Limitsios; B. Madin; J. Marcus; K. Marchikanti; R. Mark; J. Mateu; P. McCullagh; U. Mehlig; S. Meyer; X.C. Mi; L. De Middeleer; R.K. Milne; J. Moller; E. Mudrak; G.M. Nair; L.S. Nielsen; F. Nunes; J. Oehlschlaegel; T. Onkelinx; S. O'Riordan; E. Parilov; J. Picka; N. Picard; M. Porter; S. Protsiv; A. Raftery; S. Rakshit; P. Ramon; X. Raynaud, M. Reiter; T.O. Richardson; B.D. Ripley; E. Rosenbaum; B. Rowlingson; J. Rudokas; J. Rudge; C. Ryan; F. Safavimanesh; A. Sarkka; K. Schladitz; B.T. Scott; G.C. Shen; V. Shcherbakov; I.-M. Sintorn; Y. Song; M. Spiess; M. Stevenson; K. Stucki; M. Sumner; P. Surovy; B. Taylor; T. Thorarinsdottir; B. Turlach; K. Ummer; M. Uppala; A. van Burgel; T. Verbeke; M. Vihtakari; A. Villers; F. Vinatier; H. Wang; H. Wendrock; J. Wild; S. Wong; M.E. Zamboni and A. Zeileis.
Maintainer: Adrian Baddeley

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Package FactoMineR updated to version 1.27 with previous version 1.26 dated 2014-04-09

Title: Multivariate Exploratory Data Analysis and Data Mining with R
Description: an R package for exploratory data analysis
Author: Francois Husson, Julie Josse, Sebastien Le, Jeremy Mazet
Maintainer: Francois Husson

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Package rAvis updated to version 0.1.2 with previous version 0.1.1 dated 2014-03-07

Title: Interface to the bird-watching datasets at proyectoavis.com
Description: Interface to the proyectoavis.com bird observations records database. It provides means to download datasets filtered by species, order, family, and several other criteria. Provides also basic functionality to plot exploratory maps of the datasets.
Author: Javier González Hernández , Sara Varela
Maintainer: Sara Varela

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Package LatticeKrig updated to version 3.4 with previous version 3.3 dated 2014-07-11

Title: Multiresolution Kriging based on Markov random fields
Description: Functions for the interpolation of large spatial datasets. This package follows a "fixed rank Kriging" approach using a large number of basis functions and provides spatial estimates that are comparable to standard families of covariance functions. Using a large number of basis functions allows for estimates that can come close to interpolating the observations (a spatial model with a small nugget variance.) The covariance model for this method can approximate the Matern covariance family but also allows for a multi-resolution model and supports efficient computation of the profile likelihood for estimating covariance parameters. This is accomplished through compactly supported basis functions and a Markov random field model for the basis coefficients. These features lead to sparse matrices for the computations. One benefit of this approach is the facilty to do unconditional and conditional simulation of the field for large numbers of arbitrary points. There is also the flexibility for estimating nonstationary covariances. Included are generic methods for prediction, standard errors for prediction, plotting of the estimated surface and conditional and unconditional simulation.
Author: Douglas Nychka [aut, cre], Dorit Hammerling [aut], Stephan Sain [aut], Nathan Lenssen [aut]
Maintainer: Douglas Nychka

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Package ifultools updated to version 2.0-1 with previous version 2.0-0 dated 2013-12-30

Title: Insightful Research Tools
Description: Insightful Research Tools.
Author: William Constantine and Donald Percival (Applied Physics Laboratory, University of Washington)
Maintainer: Don Percival

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Package fastR updated to version 0.8-1 with previous version 0.4-2 dated 2013-04-11

Title: Data sets and utilities for Foundations and Applications of Statistics by R Pruim
Description: Data sets and utilities for Foundations and Applications of Statistics:an Introduction using R by R Pruim
Author: Randall Pruim
Maintainer: Randall Pruim

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More information about fastR at CRAN
Permanent link

Package cgAUC updated to version 1.2.1 with previous version 1.1.2 dated 2013-01-16

Title: Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it.
Description: The cgAUC can calculate the AUC-type measure of Obuchowski(2006) when gold standard is continuous, and find the optimal linear combination of variables with respect to this measure.
Author: Yuan-chin I. Chang, Yu-chia Chang, and Ling-wan Chen
Maintainer: Yu-chia Chang

Diff between cgAUC versions 1.1.2 dated 2013-01-16 and 1.2.1 dated 2014-08-28

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 cgAUC-1.1.2/cgAUC/man/s.h.Rd              |only
 cgAUC-1.2.1/cgAUC/DESCRIPTION             |   18 +++++++++---------
 cgAUC-1.2.1/cgAUC/MD5                     |   21 ++++++++++++---------
 cgAUC-1.2.1/cgAUC/NAMESPACE               |    2 ++
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 cgAUC-1.2.1/cgAUC/man/cgAUC-package.Rd    |   17 +++++++++++------
 cgAUC-1.2.1/cgAUC/man/cgAUC.Rd            |    1 +
 cgAUC-1.2.1/cgAUC/src                     |only
 17 files changed, 35 insertions(+), 24 deletions(-)

More information about cgAUC at CRAN
Permanent link

Wed, 27 Aug 2014

Package Runuran updated to version 0.21.0 with previous version 0.20.0 dated 2012-09-10

Title: R interface to the UNU.RAN random variate generators
Description: Interface to the UNU.RAN library for Universal Non-Uniform RANdom variate generators. Thus it allows to build non-uniform random number generators from quite arbitrary distributions. In particular, it provides an algorithm for fast numerical inversion for distribution with given density function. In addition, the package contains densities, distribution functions and quantiles from a couple of distributions.
Author: Josef Leydold and Wolfgang H\"ormann
Maintainer: Josef Leydold

Diff between Runuran versions 0.20.0 dated 2012-09-10 and 0.21.0 dated 2014-08-27

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 Runuran-0.21.0/Runuran/DESCRIPTION                                              |   24 
 Runuran-0.21.0/Runuran/MD5                                                      |  739 +++++-----
 Runuran-0.21.0/Runuran/NAMESPACE                                                |    2 
 Runuran-0.21.0/Runuran/NEWS                                                     |   20 
 Runuran-0.21.0/Runuran/R/Runuran.R                                              |   32 
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 Runuran-0.21.0/Runuran/configure                                                |  206 +-
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 Runuran-0.21.0/Runuran/inst/doc/Runuran.pdf                                     |binary
 Runuran-0.21.0/Runuran/inst/include/unuran.h                                    |    2 
 Runuran-0.21.0/Runuran/man/Runuran-package.Rd                                   |    8 
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 Runuran-0.21.0/Runuran/man/pinv.new.Rd                                          |    2 
 Runuran-0.21.0/Runuran/man/unuran.packed-methods.Rd                             |    2 
 Runuran-0.21.0/Runuran/man/up.Rd                                                |    4 
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 Runuran-0.21.0/Runuran/src/Makevars.in                                          |    2 
 Runuran-0.21.0/Runuran/src/Runuran.c                                            |  139 +
 Runuran-0.21.0/Runuran/src/Runuran.h                                            |   15 
 Runuran-0.21.0/Runuran/src/Runuran_distr.c                                      |   10 
 Runuran-0.21.0/Runuran/src/Runuran_pinv.c                                       |   26 
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 Runuran-0.21.0/Runuran/src/unuran-src/distr/cont.c                              |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/distr/discr.c                             |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/distributions/vc_multistudent.c           |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/methods/arou.c                            |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/methods/mvtdr_sample.ch                   |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/methods/mvtdr_struct.h                    |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/methods/nrou.c                            |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/methods/srou.c                            |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/methods/srou_struct.h                     |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/methods/ssr.c                             |    4 
 Runuran-0.21.0/Runuran/src/unuran-src/methods/ssr.h                             |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/methods/ssr_struct.h                      |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/methods/tabl.c                            |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/methods/tdr.c                             |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/methods/unur_methods_source.h             |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/methods/utdr.c                            |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/methods/vempk.c                           |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/methods/vnrou.c                           |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/methods/vnrou_struct.h                    |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/methods/x_gen.c                           |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/methods/x_gen.h                           |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/methods/x_gen_source.h                    |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/methods/x_gen_struct.h                    |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/parser/functparser.c                      |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/parser/functparser_struct.h               |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/specfunct/bessel_asympt.c                 |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/uniform/mrg31k3p.c                        |only
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 Runuran-0.21.0/Runuran/src/unuran-src/uniform/urng_fvoid.h                      |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/uniform/urng_gsl.h                        |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/uniform/urng_gslqrng.h                    |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/uniform/urng_prng.h                       |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/uniform/urng_randomshift.h                |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/uniform/urng_rngstreams.h                 |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/unur_cookies.h                            |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/unur_source.h                             |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/unur_struct.h                             |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/unur_typedefs.h                           |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/unuran.h                                  |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/urng/urng_set.c                           |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/urng/urng_source.h                        |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/urng/urng_struct.h                        |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/urng/urng_unuran.c                        |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/debug.c                             |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/debug.h                             |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/debug_source.h                      |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/eigensystem.c                       |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/utils/fmax.c                              |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/utils/hooke.c                             |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/utils/lobatto.c                           |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/utils/matrix.c                            |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/utils/mrou_rectangle.c                    |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/utils/mrou_rectangle_struct.h             |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/slist.c                             |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/utils/string.c                            |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/utils/umath.c                             |    2 
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 Runuran-0.21.0/Runuran/src/unuran-src/utils/umath_source.h                      |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/unur_errno.h                        |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/unur_fp.c                           |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/unur_fp_const_source.h              |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/unur_fp_source.h                    |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/unur_math_source.h                  |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/vector.c                            |    2 
 Runuran-0.21.0/Runuran/src/unuran-src/utils/vector_source.h                     |    2 
 Runuran-0.21.0/Runuran/src/verify.c                                             |    2 
 Runuran-0.21.0/Runuran/tests/test_auxurng.R                                     |only
 Runuran-0.21.0/Runuran/vignettes                                                |only
 360 files changed, 1060 insertions(+), 880 deletions(-)

More information about Runuran at CRAN
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Package gWidgets updated to version 0.0-54 with previous version 0.0-53 dated 2014-07-20

Title: gWidgets API for building toolkit-independent, interactive GUIs
Description: gWidgets provides a toolkit-independent API for building interactive GUIs. At least one of the 'gWidgetsXXX packages', such as gWidgetstcltk, needs to be installed. Some icons are on loan from the scigraphica project http://scigraphica.sourceforge.net.
Author: John Verzani. Based on the iwidgets code of Simon Urbanek and suggestions by Simon Urbanek, Philippe Grosjean and Michael Lawrence
Maintainer: John Verzani

Diff between gWidgets versions 0.0-53 dated 2014-07-20 and 0.0-54 dated 2014-08-27

 DESCRIPTION                |    6 +++---
 MD5                        |   12 ++++++------
 NEWS                       |   12 ++++++++++++
 R/gcommandline.R           |    4 ++--
 R/gvariables.R             |   17 +++++++++--------
 inst/doc/addingToolkit.pdf |binary
 inst/doc/gWidgets.pdf      |binary
 7 files changed, 32 insertions(+), 19 deletions(-)

More information about gWidgets at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.