Title: Metabolomic Univariate and Multivariate Analysis
Diff between muma versions 1.1 dated 2012-05-18 and 1.2 dated 2012-05-24
More information about muma at CRAN
Description: Preprocessing of metabolomic data (normalization and
scalings); Principal Component Analysis with help tool for
choosing best-separating principal components and automatic
outlier testing; automatic univariate analysis for parametric
and non-parametric data, with report generation (volcano and
box plots); partial least sqaure discriminant analysis
(PLS-DA); orthogonal partial least square discriminant analysis
(OPLS-DA); Statistical Total Correlation Spectroscopy (STOCSY);
Ratio Analysis NMR SpectroscopY (RANSY).
Author: Edoardo Gaude, Francesca Chignola, Dimitrios Spiliotopoulos,
Silvia Mari, Andrea Spitaleri and Michela Ghitti
Maintainer: Edoardo gaude
muma-1.1/muma/data/MetaBc.csv.gz |only
muma-1.2/muma/DESCRIPTION | 10 +++++-----
muma-1.2/muma/MD5 | 11 +++++------
muma-1.2/muma/NAMESPACE | 1 +
muma-1.2/muma/R/Plot.plsda.R | 10 +++++-----
muma-1.2/muma/man/Plot.plsda.Rd | 20 ++++++++++----------
muma-1.2/muma/man/muma-package.Rd | 2 +-
7 files changed, 27 insertions(+), 27 deletions(-)
Path: /cran/updated | permanent link
Title: Adaptive Weights Smoothing
Diff between aws versions 1.7-1 dated 2011-12-11 and 1.8-0 dated 2012-05-24
More information about aws at CRAN
Description: The package contains R-functions implementing the
Propagation-Separation Approach to adaptive smoothing as
described in J. Polzehl and V. Spokoiny (2006),
Propagation-Separation Approach for Local Likelihood
Estimation, Prob. Theory and Rel. Fields, 135(3):335--362. and
J. Polzehl and V. Spokoiny (2004) Spatially adaptive regression
estimation: Propagation-separation approach, WIAS-Preprint 998.
Author: Joerg Polzehl
Maintainer: Joerg Polzehl
DESCRIPTION | 25 +++----
MD5 | 60 ++++++++++++-----
NAMESPACE | 7 ++
R/Classes.r | 91 ++++++++++++++++++++++++--
R/ICIsmooth.r |only
R/aws.r | 41 ++++++------
R/awsgaussian.r | 4 -
R/awsirregular.r | 4 -
R/awspropagation.r |only
R/awssegment.r | 21 +++---
R/lpaws.r | 2
R/misc.r | 84 ++++++++++++++++--------
R/onLoad.r.in | 10 --
R/setCores.r |only
R/utilities.r |only
README | 6 +
configure | 162 ++++++++++++++++++++++++++++++++----------------
configure.ac | 51 ++++++++++-----
inst/CITATION |only
man/ICIcombined.Rd |only
man/ICIsmooth-class.Rd |only
man/ICIsmooth.Rd |only
man/aws-class.Rd |only
man/aws-package.Rd | 12 +++
man/awssegment-class.Rd |only
man/awstestprop.Rd |only
man/extract-methods.Rd |only
man/kernsm-class.Rd |only
man/kernsm.Rd |only
man/plot-methods.Rd |only
man/print-methods.Rd |only
man/risk-methods.Rd |only
man/setCores.Rd |only
man/show-methods.Rd |only
man/summary-methods.Rd |only
src/ICIsmooth.f |only
src/Makevars | 2
src/Makevars.in | 5 -
src/caws.f | 63 ++++++++----------
src/cawsmask.f | 2
src/omp_funcs.c |only
src/segment.f | 71 +++++++++++----------
42 files changed, 477 insertions(+), 246 deletions(-)
Path: /cran/updated | permanent link
Title: Creates Random Forest and Stochastic Gradient Boosting Models,
and applies them to GIS .img files to build detailed prediction
maps.
Diff between ModelMap versions 2.1.1 dated 2011-04-23 and 2.3.1 dated 2012-05-24
More information about ModelMap at CRAN
Description: This package will create sophisticated models of training
data and validate the models with an independant test set,
cross validation, or in the case of Random Forest Models, with
Out OF Bag (OOB) predictions on the training data. It will
creat graphs and tables of the model validation results. It
will apply these models to GIS .img files of predictors to
create detailed prediction surfaces. It will handle large
predictor files for map making, by reading in the .img files in
chuncks, and output to the .txt file the prediction for each
data chunk, before reading the next chenk of data.
Author: Elizabeth Freeman, Tracey Frescino
Maintainer: Elizabeth Freeman
ModelMap-2.1.1/ModelMap/inst/doc |only
ModelMap-2.1.1/ModelMap/inst/external/vignetteexamples |only
ModelMap-2.3.1/ModelMap/COPYRIGHTS | 4
ModelMap-2.3.1/ModelMap/DESCRIPTION | 12
ModelMap-2.3.1/ModelMap/MD5 |only
ModelMap-2.3.1/ModelMap/NAMESPACE |only
ModelMap-2.3.1/ModelMap/R/internal.R | 1131 +++++---
ModelMap-2.3.1/ModelMap/R/model.build.R | 197 +
ModelMap-2.3.1/ModelMap/R/model.diagnostics.R | 254 +
ModelMap-2.3.1/ModelMap/R/model.importance.plot.R |only
ModelMap-2.3.1/ModelMap/R/model.interaction.plot.R | 124
ModelMap-2.3.1/ModelMap/R/model.mapmake.R | 115
ModelMap-2.3.1/ModelMap/inst/CHANGELOG | 52
ModelMap-2.3.1/ModelMap/inst/external/helpexamples/DATATEST.csv | 668 ++---
ModelMap-2.3.1/ModelMap/inst/external/helpexamples/DATATRAIN.csv | 1292 +++++-----
ModelMap-2.3.1/ModelMap/inst/vignettes |only
ModelMap-2.3.1/ModelMap/man/ModelMap-package.Rd | 14
ModelMap-2.3.1/ModelMap/man/build.rastLUT.Rd | 8
ModelMap-2.3.1/ModelMap/man/get.test.Rd | 9
ModelMap-2.3.1/ModelMap/man/internal.Rd | 14
ModelMap-2.3.1/ModelMap/man/model.build.Rd | 31
ModelMap-2.3.1/ModelMap/man/model.diagnostics.Rd | 54
ModelMap-2.3.1/ModelMap/man/model.importance.plot.Rd |only
ModelMap-2.3.1/ModelMap/man/model.interaction.plot.Rd | 66
ModelMap-2.3.1/ModelMap/man/model.mapmake.Rd | 36
25 files changed, 2426 insertions(+), 1655 deletions(-)
Path: /cran/updated | permanent link
Title: Dynamic models for survival data
Diff between dynsurv versions 0.1-7 dated 2012-03-15 and 0.1-8 dated 2012-05-24
More information about dynsurv at CRAN
Description: Functions to fit time-varying coefficient models for
interval censored and right censored survival data. Three major
approaches are implemented: 1) Bayesian Cox model with
time-independent, time-varying or dynamic coefficients for
right censored and interval censored data; 2) Spline based
time-varying coefficient Cox model for right censored data; 3)
Transformation model with time-varying coefficients for right
censored data using estimating equations.
Author: Xiaojing Wang
Maintainer: Jun Yan
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
src/DynamicCoxModel.h | 8 ++++----
src/TimeIndepCoxModel.h | 4 ++--
src/TimeVaryingCoxModel.h | 4 ++--
5 files changed, 16 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: Simultaneous generation of multivariate binary and normal
variates.
Diff between BinNor versions 1.0 dated 2011-11-05 and 2.0 dated 2012-05-24
More information about BinNor at CRAN
Description: Generating multiple binary and normal variables
simultaneously given marginal characteristics and association
structure based on the methodology proposed by Demirtas and
Doganay (2012).
Author: Anup Amatya, Hakan Demirtas
Maintainer: Anup Amatya
DESCRIPTION | 13 ++++++++-----
MD5 | 21 +++++++++++----------
NAMESPACE |only
man/BinNor-package.Rd | 10 ++--------
man/compute.sigma.star.Rd | 5 +----
man/jointly.generate.binary.normal.Rd | 19 ++-----------------
man/lower.tri.to.corr.mat.Rd | 30 +++---------------------------
man/simulation.Rd | 27 +--------------------------
man/validation.bin.Rd | 31 +------------------------------
man/validation.corr.Rd | 20 --------------------
man/validation.nor.Rd | 34 +---------------------------------
man/validation.range.Rd | 29 -----------------------------
12 files changed, 30 insertions(+), 209 deletions(-)
Path: /cran/updated | permanent link
Title: analysis of complex survey samples
Diff between survey versions 3.28 dated 2012-02-03 and 3.28-1 dated 2012-05-24
More information about survey at CRAN
Description: Summary statistics, two-sample tests, generalised linear
models, cumulative link models, Cox models, loglinear models,
and general maximum pseudolikelihood estimation for multistage
stratified, cluster-sampled, unequally weighted survey samples.
Variances by Taylor series linearisation or replicate weights.
Post-stratification, calibration, and raking. Two-phase
subsampling designs. Graphics. Predictive margins by direct
standardization. PPS sampling without replacement. Principal
components, factor analysis.
Author: Thomas Lumley
Maintainer: Thomas Lumley
DESCRIPTION | 6 +-
MD5 | 96 ++++++++++++++++----------------
NAMESPACE | 1
R/multistage.R | 4 -
R/multivariate.R | 2
R/olr.R | 9 ++-
R/regtest.R | 8 ++
R/survey.R | 5 +
R/surveyby.R | 24 +++++---
R/surveygraph.R | 4 -
R/surveyrep.R | 42 ++++++++------
R/sysdata.rda |binary
R/twophase2.R | 14 ++--
THANKS | 1
data/api.rda |binary
data/crowd.rda |binary
data/election.rda |binary
data/fpc.rda |binary
data/hospital.rda |binary
data/mu284.rda |binary
data/scd.rda |binary
inst/CITATION | 6 +-
inst/NEWS | 17 +++++
inst/doc/domain.pdf |binary
inst/doc/epi.pdf |binary
inst/doc/phase1.pdf |binary
inst/doc/pps.pdf |binary
inst/doc/survey.pdf |binary
man/SE.Rd | 2
man/as.fpc.Rd | 2
man/as.svrepdesign.Rd | 6 +-
man/as.svydesign2.Rd | 2
man/dimnames.DBIsvydesign.Rd | 5 +
man/marginpred.Rd | 3 -
man/svrVar.Rd | 2
man/svrepdesign.Rd | 11 ++-
man/svyCprod.Rd | 2
man/svyby.Rd | 22 ++++++-
man/svycontrast.Rd | 5 +
man/svyolr.Rd | 8 ++
tests/caleg.Rout.save | 129 +++++++++++++++++++++----------------------
tests/deff.Rout.save | 23 ++++---
tests/domain.R | 4 -
tests/domain.Rout.save | 29 +++------
tests/lonely.psu.Rout.save | 22 +------
tests/nwts-cch.Rout.save | 14 +---
tests/rakecheck.Rout.save | 47 ++++++++-------
tests/twophase.R | 8 +-
tests/twophase.Rout.save | 38 +++++-------
49 files changed, 335 insertions(+), 288 deletions(-)
Path: /cran/updated | permanent link
Title: Design and analysis of observational studies
Diff between osDesign versions 1.5 dated 2011-08-24 and 1.6 dated 2012-05-23
More information about osDesign at CRAN
Description: The osDesign serves for planning an observational study.
Currently, functionality is focused on the two-phase and
case-control designs. Functions in this packages provides Monte
Carlo based evaluation of operating characteristics such as
powers for estimators of the components of a logistic
regression model.
Author: Sebastien Haneuse, Takumi Saegusa, Nilanjan Chaterjee, Norman
Breslow
Maintainer: Sebastien Haneuse
DESCRIPTION | 6 +--
MD5 | 94 ++++++++++++++++++++++++++--------------------------
R/ML.R | 95 +++++++++++++++++++++++++++++++++++++++++++++--------
R/PL.R | 3 -
R/WL.R | 3 -
R/beta0.R | 7 ++-
R/beta0eval.R | 21 +++++++----
R/ccChecks.R | 1
R/ccPower.R | 1
R/ccSim.R | 1
R/coreChecks.R | 1
R/evalOC.R | 45 +++++++++++++------------
R/evalPower.R | 1
R/expandCatX.R | 1
R/expit.R | 1
R/hdp.R | 1
R/keepOC.R | 1
R/lagrad.R | 1
R/lagrange.R | 1
R/lnsrch.R | 1
R/logit.R | 1
R/phaseI.R | 1
R/phaseIChecks.R | 1
R/plotPower.R | 1
R/print.ccPower.R | 1
R/print.ccSim.R | 1
R/print.tpsPower.R | 1
R/print.tpsSim.R | 1
R/rmvhyper.R | 1
R/s2.R | 1
R/strReverse.R | 1
R/stratify.R | 1
R/summary.tps.R | 1
R/tps.R | 6 +--
R/tpsChecks.R | 1
R/tpsPower.R | 6 ++-
R/tpsSim.R | 20 ++++++++---
man/Ohio.Rd | 3 +
man/beta0.Rd | 9 +++--
man/ccPower.Rd | 3 +
man/ccSim.Rd | 3 +
man/infants.Rd | 2 -
man/phaseI.Rd | 2 -
man/plotPower.Rd | 2 -
man/rmvhyper.Rd | 2 -
man/tps.Rd | 22 ++++++++++--
man/tpsPower.Rd | 11 ++++--
man/tpsSim.Rd | 8 +++-
48 files changed, 247 insertions(+), 152 deletions(-)
Path: /cran/updated | permanent link
Title: General Non-linear Optimization
Diff between Rsolnp versions 1.11 dated 2011-07-30 and 1.12 dated 2012-05-23
More information about Rsolnp at CRAN
Description: General Non-linear Optimization Using Augmented Lagrange
Multiplier Method
Author: Alexios Ghalanos and Stefan Theussl
Maintainer: Alexios Ghalanos
Rsolnp-1.11/Rsolnp/data/datalist |only
Rsolnp-1.12/Rsolnp/ChangeLog | 4 ++++
Rsolnp-1.12/Rsolnp/DESCRIPTION | 12 ++++++------
Rsolnp-1.12/Rsolnp/MD5 |only
Rsolnp-1.12/Rsolnp/R/subnp.R | 8 ++++----
Rsolnp-1.12/Rsolnp/R/zzz.R | 11 +++++------
Rsolnp-1.12/Rsolnp/data/dji30ret.rda |binary
Rsolnp-1.12/Rsolnp/man/Rsolnp-package.Rd | 4 ++--
8 files changed, 21 insertions(+), 18 deletions(-)
Path: /cran/updated | permanent link
Title: Analysis of Oceanographic data
Diff between oce versions 0.8-7 dated 2012-04-05 and 0.8-8 dated 2012-05-23
More information about oce at CRAN
Description: Supports the analysis of Oceanographic data, including ADP
measurements, CTD measurements, sectional data, sea-level time
series, coastline files, etc. Provides functions for
calculating seawater properties such as potential temperature
and density, as well as derived properties such as buoyancy
frequency and dynamic height.
Author: Dan Kelley
Maintainer: Dan Kelley
oce-0.8-7/oce/inst/doc/a03.png |only
oce-0.8-7/oce/inst/doc/oce-adpfig.pdf |only
oce-0.8-7/oce/inst/doc/oce-ctdfig.pdf |only
oce-0.8-7/oce/inst/doc/oce-ctdrawfig.pdf |only
oce-0.8-7/oce/inst/doc/oce-ptfig.pdf |only
oce-0.8-7/oce/inst/doc/oce-sealevelfig.pdf |only
oce-0.8-7/oce/inst/doc/oce-sectionfiga03.pdf |only
oce-0.8-7/oce/inst/doc/oce-topofig.pdf |only
oce-0.8-7/oce/inst/doc/pt.png |only
oce-0.8-7/oce/inst/doc/rdi-beams.jpg |only
oce-0.8-7/oce/inst/doc/sealevel.png |only
oce-0.8-7/oce/inst/doc/topo.png |only
oce-0.8-7/oce/man/tdrAtm.Rd |only
oce-0.8-8/oce/.gitignore | 1
oce-0.8-8/oce/DESCRIPTION | 8
oce-0.8-8/oce/MD5 | 165 +--
oce-0.8-8/oce/NAMESPACE | 14
oce-0.8-8/oce/NEWS | 11
oce-0.8-8/oce/R/adp.R | 284 +++--
oce-0.8-8/oce/R/adp.rdi.R | 20
oce-0.8-8/oce/R/adv.R | 1
oce-0.8-8/oce/R/cm.R | 5
oce-0.8-8/oce/R/coastline.R | 44
oce-0.8-8/oce/R/ctd.R | 283 +++--
oce-0.8-8/oce/R/imagep.R | 79 +
oce-0.8-8/oce/R/misc.R | 93 +
oce-0.8-8/oce/R/moon.R |only
oce-0.8-8/oce/R/section.R | 31
oce-0.8-8/oce/R/sun.R | 48
oce-0.8-8/oce/R/sw.R | 92 +
oce-0.8-8/oce/R/teos.R |only
oce-0.8-8/oce/R/tidem.R | 1
oce-0.8-8/oce/R/zzz.R | 24
oce-0.8-8/oce/data/cm.rda |only
oce-0.8-8/oce/data/datalist | 1
oce-0.8-8/oce/inst/doc/.Rhistory | 1199 ++++++++++-------------
oce-0.8-8/oce/inst/doc/oce.pdf |binary
oce-0.8-8/oce/man/as.coastline.Rd | 40
oce-0.8-8/oce/man/beamUnattenuateAdp.Rd | 8
oce-0.8-8/oce/man/cm.Rd |only
oce-0.8-8/oce/man/ctd-class.Rd | 18
oce-0.8-8/oce/man/drawIsopycnals.Rd | 4
oce-0.8-8/oce/man/drifter.Rd | 4
oce-0.8-8/oce/man/eclipticalToEquatorial.Rd |only
oce-0.8-8/oce/man/equatorialToLocalHorizontal.Rd |only
oce-0.8-8/oce/man/figures/Makefile | 2
oce-0.8-8/oce/man/figures/starCoords.R |only
oce-0.8-8/oce/man/formatPosition.Rd | 2
oce-0.8-8/oce/man/grad.Rd |only
oce-0.8-8/oce/man/imagep.Rd | 11
oce-0.8-8/oce/man/integrateTrapezoid.Rd |only
oce-0.8-8/oce/man/julianCenturyAnomaly.Rd |only
oce-0.8-8/oce/man/julianDay.Rd |only
oce-0.8-8/oce/man/met.Rd | 8
oce-0.8-8/oce/man/moonAngle.Rd |only
oce-0.8-8/oce/man/munk.Rd | 2
oce-0.8-8/oce/man/oce.plot.sticks.Rd | 6
oce-0.8-8/oce/man/oceBisect.Rd | 2
oce-0.8-8/oce/man/plot.adv.Rd | 6
oce-0.8-8/oce/man/plot.cm.Rd | 4
oce-0.8-8/oce/man/plot.coastline.Rd | 11
oce-0.8-8/oce/man/plot.ctd.Rd | 11
oce-0.8-8/oce/man/plot.drifter.Rd | 6
oce-0.8-8/oce/man/plot.echosounder.Rd | 6
oce-0.8-8/oce/man/plot.section.Rd | 8
oce-0.8-8/oce/man/plotProfile.Rd | 45
oce-0.8-8/oce/man/plotScan.Rd | 8
oce-0.8-8/oce/man/plotTS.Rd | 26
oce-0.8-8/oce/man/prettyPosition.Rd |only
oce-0.8-8/oce/man/read.cm.Rd | 3
oce-0.8-8/oce/man/redfieldNC.Rd | 1
oce-0.8-8/oce/man/redfieldNP.Rd | 4
oce-0.8-8/oce/man/redfieldPlankton.Rd | 3
oce-0.8-8/oce/man/resizableLabel.Rd | 1
oce-0.8-8/oce/man/retime.Rd | 10
oce-0.8-8/oce/man/riley.Rd | 23
oce-0.8-8/oce/man/sealevelHalifax.Rd | 24
oce-0.8-8/oce/man/siderealTime.Rd |only
oce-0.8-8/oce/man/soi.Rd | 2
oce-0.8-8/oce/man/subtractBottomVelocity.Rd |only
oce-0.8-8/oce/man/summary.adv.Rd | 6
oce-0.8-8/oce/man/summary.cm.Rd | 3
oce-0.8-8/oce/man/summary.coastline.Rd | 6
oce-0.8-8/oce/man/summary.drifter.Rd | 6
oce-0.8-8/oce/man/summary.echosounder.Rd | 6
oce-0.8-8/oce/man/sunAngle.Rd | 43
oce-0.8-8/oce/man/swAbsoluteSalinity.Rd |only
oce-0.8-8/oce/man/swConservativeTemperature.Rd |only
oce-0.8-8/oce/man/swRho.Rd | 26
oce-0.8-8/oce/man/swSTrho.Rd | 4
oce-0.8-8/oce/man/swTSrho.Rd | 5
oce-0.8-8/oce/man/tdrPatm.Rd |only
oce-0.8-8/oce/man/tdrTrim.Rd | 10
oce-0.8-8/oce/man/teos.Rd |only
oce-0.8-8/oce/man/teosSetLibrary.Rd |only
oce-0.8-8/oce/man/tidem.Rd | 4
oce-0.8-8/oce/man/wilson.Rd | 3
oce-0.8-8/oce/src/gradient.c |only
oce-0.8-8/oce/src/sfm_enu.c | 4
oce-0.8-8/oce/src/sw.c | 87 +
oce-0.8-8/oce/src/teos.c |only
oce-0.8-8/oce/src/trap.c |only
oce-0.8-8/oce/tests/astronomical.R |only
oce-0.8-8/oce/tests/eos.R | 23
104 files changed, 1693 insertions(+), 1256 deletions(-)
Path: /cran/updated | permanent link
Title: Analysis of diffusion weighted imaging (DWI) data
Diff between dti versions 1.0-0.1 dated 2011-12-07 and 1.0-3 dated 2012-05-23
More information about dti at CRAN
Description: Diffusion Weighted Imaging (DWI) is a Magnetic Resonance
Imaging modality, that measures diffusion of water in tissues
like the human brain. The package contains R-functions to
process diffusion-weighted data. The functionality includes
diffusion tensor imaging (DTI), structural adaptive smoothing
in in case of (DTI) (K. Tabelow, J. Polzehl, V. Spokoiny, and
H.U. Voss, Diffusion Tensor Imaging: Structural Adaptive
Smoothing, Neuroimage 39(4), 1763-1773 (2008)), modeling for
high angular resolution diffusion weighted imaging (HARDI)
using Q-ball-reconstruction and tensor mixture models and a
stremaline fiber tracking for tensor and tensor mixture models.
The package provides functionality to manipulate and visualize
results in 2D and 3D.
Author: Karsten Tabelow
Maintainer: Karsten Tabelow
DESCRIPTION | 38 +-
HISTORY | 19 +
MD5 | 68 ++--
NAMESPACE | 5
R/Classes.r | 2
R/aws.r | 5
R/aws2.r | 7
R/awsse3.r | 129 ++++----
R/dti.r | 129 ++++----
R/io.r | 253 +++++++++------
R/misc.r | 27 +
R/mixtensorpl.r | 159 +++++++--
R/parallel.r |only
R/paramse3.r | 16 -
R/plot.r | 6
R/ricebias.r | 40 ++
R/show3d.r | 4
R/smse3misc.r | 261 ++++++++++++----
R/utilities.r | 94 ++++-
R/varest.r | 97 ++++++
man/awssigmc.Rd |only
man/dtiIndices-methods.Rd | 4
man/dtiTensor-methods.Rd | 4
man/dwi.smooth-methods.Rd | 16 -
man/dwiMixtensor-methods.Rd | 5
man/extract-methods.Rd | 4
man/getmask-methods.Rd |only
man/pmatrix.Rd |only
man/readDWIdata.Rd | 5
src/aniso.f | 633 ++++++++++++++++++++++++---------------
src/bessel.c | 9
src/fibers.f | 2
src/misc.f | 41 ++
src/mixtens.f | 316 ++++++++++++++++---
src/mixtensorpl.c | 68 ++--
src/nlrdtirg.f | 61 ++-
src/smse3.f | 700 +++++++++++++++++++++-----------------------
37 files changed, 2090 insertions(+), 1137 deletions(-)
Path: /cran/updated | permanent link
Title: Exploratory Chemometrics for Spectroscopy
Diff between ChemoSpec versions 1.50-2 dated 2012-01-04 and 1.51-0 dated 2012-05-23
More information about ChemoSpec at CRAN
Description: A collection of functions for plotting spectra (NMR, IR
etc) and carrying out various forms of top-down exploratory
data analysis, such as HCA, PCA and model-based clustering.
The design allows comparison of data from samples which fall
into groups such as treatment vs. control. Robust methods
appropriate for this type of high-dimensional data are
available. ChemoSpec is designed to be very user friendly and
suitable for people with limited background in R.
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson
DESCRIPTION | 21 ++++++++++-----
MD5 | 63 ++++++++++++++++++++++++----------------------
NAMESPACE | 3 +-
NEWS | 13 +++++++++
R/plotScree2.R |only
R/removeGroup.R |only
R/removeSample.R | 3 +-
R/sPlotSpectra.R | 4 --
inst/doc/ChemoSpec.Rnw |only
inst/doc/ChemoSpec.pdf |binary
man/ChemoSpec-package.Rd | 4 +-
man/LoopThruSpectra.Rd | 2 -
man/aovPCA.Rd | 10 +++++--
man/aovPCAloadings.Rd | 4 +-
man/aovPCAscores.Rd | 4 +-
man/avgFacLvls.Rd | 4 +-
man/baselineSpec.Rd | 11 ++++----
man/classPCA.Rd | 6 ++--
man/colLeaf.Rd | 1
man/hcaScores.Rd | 6 ++--
man/hcaSpectra.Rd | 4 +-
man/hmapSpectra.Rd | 12 +++-----
man/pcaBoot.Rd | 4 +-
man/pcaDiag.Rd | 6 ++--
man/plot2Loadings.Rd | 6 ++--
man/plotLoadings.Rd | 8 ++---
man/plotScores.Rd | 6 ++--
man/plotScree.Rd | 17 +++++++-----
man/removeFreq.Rd | 7 +++++
man/removeSample.Rd | 11 +++++---
man/robPCA.Rd | 6 ++--
man/sPlotSpectra.Rd | 5 ++-
man/specSurvey.Rd | 2 -
man/splitSpectraGroups.Rd | 11 +++++---
34 files changed, 155 insertions(+), 109 deletions(-)
Path: /cran/updated | permanent link
Title: Optimal stratification of sampling frames for multipurpose
sampling surveys
Diff between SamplingStrata versions 0.9-2 dated 2012-01-24 and 0.9-3 dated 2012-05-23
More information about SamplingStrata at CRAN
Description: In the field of sampling design (in particular for
stratified sampling), this package offers an approach for the
determination of the best stratification of a sampling frame,
the one that ensures the minimum sample size under the
condition to satisfy precision constraints in a multivariate
and multidomain case. This approach is based on the use of the
genetic algorithm: each solution (i.e. a particular partition
in strata of the sampling frame) is considered as an individual
in a population; the fitness of all individuals is evaluated by
calculating (using the Bethel-Chromy algorithm) the sampling
size satisfying accuracy constraints on the target estimates.
Functions in the package allows to: (a) analyse the obtained
results of the optimisation step; (b) assign the new strata
labels to the sampling frame; (c) select a sample from the new
frame accordingly to the best allocation. There is also a
function that allows to build the most important input to the
optimisation step, i.e. the "strata" dataframe, containing
information (means and standard errors) regarding the
distributions of the target variables in the different strata,
using the sampling frame or using data from previous rounds of
the same survey. As auxiliary variables that concur to the
stratification can be only of the categorical type, the package
offers a function ("var.bin") that allows to transform
continuous variables into categorical ordinal ones by applying
a k-means univariate clustering method. Functions for the
execution of the genetic algorithm are a modified version of
the functions in the "genalg" package.
Author: Giulio Barcaroli
Maintainer: Giulio Barcaroli
DESCRIPTION | 8
MD5 | 46 +--
R/Bethel.r | 7
R/aggrStrata.r | 7
R/buildStrataDF.R | 7
R/checkInput.R | 127 +++++----
R/optimizeStrata.R | 17 -
R/rbgaV2.R | 470 ++++++++++++++++++-----------------
R/selectSample.R | 29 +-
R/strataGenalg.R | 23 +
R/updateFrame.R | 15 -
R/updateStrata.r | 22 -
R/verify.R | 5
data/swissmunicipalities.rda |only
inst/doc/SamplingStrataVignette.Rnw | 4
inst/doc/SamplingStrataVignette.pdf |binary
man/bethel.Rd | 4
man/buildStrataDF.Rd | 1
man/checkInput.Rd | 2
man/optimizeStrata.Rd | 68 ++---
man/swissmunicipalities.Rd |only
man/var.bin.Rd | 10
man/verify.Rd | 8
vignettes/SamplingStrata.bib | 58 ++--
vignettes/SamplingStrataVignette.Rnw | 16 -
25 files changed, 513 insertions(+), 441 deletions(-)
Path: /cran/updated | permanent link
Title: R binding for cppbugs
Diff between rcppbugs versions 0.0.8 dated 2012-04-27 and 0.1.0 dated 2012-05-23
More information about rcppbugs at CRAN
Description: R binding for cppbugs
Author: Whit Armstrong
Maintainer: Whit Armstrong
DESCRIPTION | 6
MD5 | 60 +++--
NAMESPACE | 3
R/cppbugs.R | 141 ++++++++++++-
man/deterministic.Rd | 10
man/mcmc.distributions.Rd | 13 -
man/run.model.Rd | 8
src/assign.beta.logp.h |only
src/cppbugs/.git | 2
src/cppbugs/cppbugs/cppbugs.hpp | 1
src/cppbugs/cppbugs/mcmc.bernoulli.hpp | 46 ----
src/cppbugs/cppbugs/mcmc.beta.hpp |only
src/cppbugs/cppbugs/mcmc.binomial.hpp | 2
src/cppbugs/cppbugs/mcmc.deterministic.hpp | 1
src/cppbugs/cppbugs/mcmc.dynamic.hpp | 2
src/cppbugs/cppbugs/mcmc.dynamic.stochastic.hpp | 3
src/cppbugs/cppbugs/mcmc.gamma.hpp | 2
src/cppbugs/cppbugs/mcmc.jump.hpp | 16 +
src/cppbugs/cppbugs/mcmc.math.hpp | 98 +++++----
src/cppbugs/cppbugs/mcmc.model.hpp | 80 +++++--
src/cppbugs/cppbugs/mcmc.multivariate.normal.hpp |only
src/cppbugs/cppbugs/mcmc.normal.hpp | 2
src/cppbugs/cppbugs/mcmc.object.hpp | 2
src/cppbugs/cppbugs/mcmc.observed.hpp | 2
src/cppbugs/cppbugs/mcmc.stochastic.hpp | 1
src/cppbugs/cppbugs/mcmc.uniform.hpp | 2
src/cppbugs/test/varying.coefs.global.prior.cpp | 4
src/distribution.types.h | 2
src/helpers.cpp | 9
src/helpers.h | 1
src/interface.cpp | 242 ++++++++++++++++++-----
src/linear.grouped.deterministic.h |only
src/r.deterministic.h | 37 ---
src/r.mcmc.model.h | 73 +++++-
34 files changed, 631 insertions(+), 240 deletions(-)
Path: /cran/updated | permanent link
Title: A package performing Dynamic Bayesian Network inference.
Diff between G1DBN versions 3.0 dated 2012-03-01 and 3.1 dated 2012-05-23
More information about G1DBN at CRAN
Description: G1DBN performs DBN inference using 1st order conditional
dependencies.
Author: Sophie Lebre
Maintainer: Sophie Lebre
DESCRIPTION | 10 +++++-----
MD5 | 4 ++--
NAMESPACE | 2 +-
3 files changed, 8 insertions(+), 8 deletions(-)
Path: /cran/updated | permanent link
Title: R MPFR - Multiple Precision Floating-Point Reliable
Diff between Rmpfr versions 0.4-7 dated 2012-05-16 and 0.4-8 dated 2012-05-23
More information about Rmpfr at CRAN
Description: Rmpfr provides S4 classes and methods for arithmetic
including transcendental ("special") functions for arbitrary
precision floating point numbers. To this end, it interfaces to
the LGPL'ed MPFR (Multiple Precision Floating-Point Reliable)
Library which itself is based on the GMP (GNU Multiple
Precision) Library.
Author: Martin Maechler
Maintainer: Martin Maechler
Rmpfr-0.4-7/Rmpfr/inst/doc/2012-Rmpfr-ZurichR |only
Rmpfr-0.4-7/Rmpfr/inst/doc/_region_.tex |only
Rmpfr-0.4-7/Rmpfr/inst/doc/log1mexp-note_nb-mm3.pdf |only
Rmpfr-0.4-7/Rmpfr/outdated-man+vign.mail |only
Rmpfr-0.4-8/Rmpfr/ChangeLog | 5 +
Rmpfr-0.4-8/Rmpfr/DESCRIPTION | 10 +-
Rmpfr-0.4-8/Rmpfr/MD5 | 90 ++------------------
Rmpfr-0.4-8/Rmpfr/NAMESPACE | 6 +
Rmpfr-0.4-8/Rmpfr/R/mpfr.R | 47 ++++++++++
Rmpfr-0.4-8/Rmpfr/R/special-fun.R | 3
Rmpfr-0.4-8/Rmpfr/TODO | 3
Rmpfr-0.4-8/Rmpfr/inst/doc/Rmpfr-pkg.pdf |binary
Rmpfr-0.4-8/Rmpfr/inst/doc/log1mexp-note.Rnw | 2
Rmpfr-0.4-8/Rmpfr/inst/doc/log1mexp-note.pdf |binary
Rmpfr-0.4-8/Rmpfr/man/Bernoulli.Rd | 3
Rmpfr-0.4-8/Rmpfr/man/utils.Rd | 26 ++++-
16 files changed, 100 insertions(+), 95 deletions(-)
Path: /cran/updated | permanent link
Title: Miscellaneous Qt-based utilities
Diff between qtutils versions 0.1-2 dated 2012-05-09 and 0.1-3 dated 2012-05-23
More information about qtutils at CRAN
Description: Miscellaneous Qt-based tools for R
Author: Deepayan Sarkar
Maintainer: Deepayan Sarkar
DESCRIPTION | 6 +++---
MD5 | 4 ++--
src/createProject.sh | 4 ++--
3 files changed, 7 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness
estimation
Diff between mgcv versions 1.7-16 dated 2012-04-30 and 1.7-17 dated 2012-05-23
More information about mgcv at CRAN
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs. Includes a gam() function.
Author: Simon Wood
Maintainer: Simon Wood
DESCRIPTION | 6
MD5 | 24 +--
R/bam.r | 17 +-
R/fast-REML.r | 22 ++-
R/mgcv.r | 116 +++++++++++++-----
R/smooth.r | 204 ++++++++++++++++++++++++++------
changeLog | 29 ++++
man/anova.gam.Rd | 38 +++--
man/gam.Rd | 32 ++---
man/gam.check.Rd | 10 +
man/random.effects.Rd | 4
man/smooth.construct.mrf.smooth.spec.Rd | 2
man/summary.gam.Rd | 71 ++++++-----
13 files changed, 420 insertions(+), 155 deletions(-)
Path: /cran/updated | permanent link
Title: Visualization of Categorical Response Models
Diff between EffectStars versions 1.0 dated 2012-03-06 and 1.1 dated 2012-05-23
More information about EffectStars at CRAN
Description: The package provides functions to visualize regression
models with categorical response. The effects of the covariates
are plotted with star plots in order to allow for an optical
impression of the fitted model.
Author: Gunther Schauberger
Maintainer:
DESCRIPTION | 6
EffectStars-Ex.R |only
MD5 | 29 +-
R/star.cumulative.R | 22 -
R/star.nominal.r | 12
R/star.nominalcat.R | 627 +++++++++++++++++++++++++++++++++++++++++++++++-
R/star.nominalglob.R | 506 ++++++++++++++++++++++++++++++++++++++
R/star.sequential.R | 9
inst/doc/alligator.Rnw | 6
inst/doc/alligator.pdf |binary
inst/doc/election.Rnw | 8
inst/doc/election.pdf |binary
man/star.cumulative.Rd | 2
man/star.nominal.Rd | 12
man/star.nominalcat.Rd | 10
man/star.nominalglob.Rd | 17 -
16 files changed, 1193 insertions(+), 73 deletions(-)
Path: /cran/updated | permanent link
Title: R messaging using ActiveMQ and jms
Diff between Rjms versions 0.0.2 dated 2011-11-03 and 0.0.3 dated 2012-05-23
More information about Rjms at CRAN
Description: This package uses rJava to publish messages to an activeMQ
queue or topic, implementing enterprise integration patterns.
Author: SMS Chauhan
Maintainer: SMS Chauhan
Rjms-0.0.2/Rjms/R/destroy.logger.R |only
Rjms-0.0.2/Rjms/R/initialize.logger.R |only
Rjms-0.0.2/Rjms/R/onLoad.R |only
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Rjms-0.0.2/Rjms/inst/java/RjmsProducer-0.0.3.jar |only
Rjms-0.0.3/Rjms/DESCRIPTION | 14 +-
Rjms-0.0.3/Rjms/MD5 | 23 ++--
Rjms-0.0.3/Rjms/NAMESPACE | 4
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Rjms-0.0.3/Rjms/inst/java/Rjms-0.0.3.jar |only
Rjms-0.0.3/Rjms/man/Rjms-package.Rd | 129 ++++++++++++-----------
Rjms-0.0.3/Rjms/man/consume.Rd |only
Rjms-0.0.3/Rjms/man/destroy.consumer.Rd |only
Rjms-0.0.3/Rjms/man/destroy.logger.Rd | 5
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Rjms-0.0.3/Rjms/man/initialize.logger.Rd | 11 -
Rjms-0.0.3/Rjms/man/listen.Rd |only
Rjms-0.0.3/Rjms/man/to.logger.Rd | 17 +--
18 files changed, 110 insertions(+), 93 deletions(-)
Path: /cran/updated | permanent link
Title: Linear and Nonlinear Mixed Effects Models
Diff between nlme versions 3.1-103 dated 2012-01-16 and 3.1-104 dated 2012-05-23
More information about nlme at CRAN
Description: Fit and compare Gaussian linear and nonlinear
mixed-effects models.
Author: Jose Pinheiro (S version), Douglas Bates (up to 2007), Saikat
DebRoy (up to 2002), Deepayan Sarkar (up to 2005), the R Core
team.
Maintainer: R-core
ChangeLog | 20 +++++++++++++++++++-
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
inst/CITATION | 5 ++---
src/gnls.c | 2 +-
src/nlOptimizer.c | 12 +++++++-----
src/nlme.c | 4 ++--
src/nlmefit.c | 4 ++--
src/nlmefit.h | 2 +-
9 files changed, 46 insertions(+), 27 deletions(-)
Path: /cran/updated | permanent link
Title: K Adaptive Partitioning for Survival data
Diff between kaps versions 0.9-2 dated 2012-04-16 and 0.9-3 dated 2012-05-23
More information about kaps at CRAN
Description: This package provides some routines to conduct the
K-adaptive parititioning (kaps) and recursive partitioning
(lrtree) for survival data, with the application to SEER
(Surveillance Epidemiology and End Results). A function kaps is
an implementation version of our algorithm kaps which provides
minimax based partitioing rule by log-rank test. A fuction
lrtree enables researchers to conduct log-rank survival tree
proposed by Segal (1988).
Author: Soo-Heang Eo and HyungJun Cho
Maintainer: Soo-Heang Eo
DESCRIPTION | 8 +++----
MD5 | 16 +++++++-------
NEWS | 8 +++++--
R/accessaries.R | 62 ++++++++++++++++++++++++++-----------------------------
R/apss.R | 1
R/apss.control.R | 4 ++-
R/kaps.R | 21 ++++++++++++++----
man/kaps.Rd | 2 -
man/prune.Rd | 2 -
9 files changed, 70 insertions(+), 54 deletions(-)
Path: /cran/updated | permanent link
Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase,
...
Diff between foreign versions 0.8-49 dated 2012-02-10 and 0.8-50 dated 2012-05-23
More information about foreign at CRAN
Description: Functions for reading and writing data stored by
statistical packages such as Minitab, S, SAS, SPSS, Stata,
Systat, ..., and for reading and writing dBase files.
Author: R Core Team [aut, cph, cre], Roger Bivand [ctb, cph], Vincent
J. Carey [ctb, cph], Saikat DebRoy [ctb, cph], Stephen Eglen
[ctb, cph], Rajarshi Guha [ctb, cph], Nicholas Lewin-Koh [ctb,
cph], Mark Myatt [ctb, cph], Ben Pfaff [ctb], Frank Warmerdam
[ctb, cph], Stephen Weigand [ctb, cph], Free Software
Foundation, Inc. [cph]. See the COPYRIGHTS file in the sources
for details on contributions and copyrights.
Maintainer: R Core Team
ChangeLog | 9 +++++++++
DESCRIPTION | 39 ++++++++++++++++++++++++++-------------
MD5 | 4 ++--
3 files changed, 37 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Title: A community modeling foundation for Eco-Hydrology.
Diff between EcoHydRology versions 0.3.8 dated 2011-06-20 and 0.4.1 dated 2012-05-23
More information about EcoHydRology at CRAN
Description: This package provides a flexible foundation for
scientists, engineers, and policy makers to base teaching
exercises as well as for more applied use to model complex
eco-hydrological interactions.
Author: Fuka, DR, Walter, MT, and Easton, ZM
Maintainer: Daniel Fuka
EcoHydRology-0.3.8/EcoHydRology/src/1modparm.f |only
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EcoHydRology-0.4.1/EcoHydRology/R/transmissivity.R | 33 +---
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EcoHydRology-0.4.1/EcoHydRology/man/EnvirEnergy.Rd | 33 +---
EcoHydRology-0.4.1/EcoHydRology/man/EstCloudiness.Rd | 57 --------
EcoHydRology-0.4.1/EcoHydRology/man/EvapHeat.Rd | 25 ---
EcoHydRology-0.4.1/EcoHydRology/man/GSOD_history.Rd | 4
EcoHydRology-0.4.1/EcoHydRology/man/GroundHeat.Rd | 22 ---
EcoHydRology-0.4.1/EcoHydRology/man/Longwave.Rd | 26 ---
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EcoHydRology-0.4.1/EcoHydRology/man/SnowMelt.Rd |only
EcoHydRology-0.4.1/EcoHydRology/man/SoilStorage.Rd | 23 ---
EcoHydRology-0.4.1/EcoHydRology/man/Solar.Rd | 46 ------
EcoHydRology-0.4.1/EcoHydRology/man/alter_files.Rd | 26 ---
EcoHydRology-0.4.1/EcoHydRology/man/build_gsod_forcing_data.Rd | 17 --
EcoHydRology-0.4.1/EcoHydRology/man/build_swat_basic.Rd | 28 ----
EcoHydRology-0.4.1/EcoHydRology/man/change_params.Rd | 9 -
EcoHydRology-0.4.1/EcoHydRology/man/declination.Rd | 26 ---
EcoHydRology-0.4.1/EcoHydRology/man/get_gsod_stn.Rd | 14 --
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EcoHydRology-0.4.1/EcoHydRology/man/readSWAT.Rd | 16 --
EcoHydRology-0.4.1/EcoHydRology/man/runSWAT2005.Rd | 16 --
EcoHydRology-0.4.1/EcoHydRology/man/setup_swatcal.Rd | 24 ---
EcoHydRology-0.4.1/EcoHydRology/man/slopefactor.Rd | 26 ---
EcoHydRology-0.4.1/EcoHydRology/man/solarangle.Rd | 29 ----
EcoHydRology-0.4.1/EcoHydRology/man/solaraspect.Rd | 29 ----
EcoHydRology-0.4.1/EcoHydRology/man/swat_general.Rd | 10 -
EcoHydRology-0.4.1/EcoHydRology/man/swat_objective_function.Rd | 29 ----
EcoHydRology-0.4.1/EcoHydRology/man/transmissivity.Rd | 67 +---------
EcoHydRology-0.4.1/EcoHydRology/src/Makefile |only
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EcoHydRology-0.4.1/EcoHydRology/src/SWAT2005 |only
EcoHydRology-0.4.1/EcoHydRology/src/SWAT2009 |only
EcoHydRology-0.4.1/EcoHydRology/src/install.libs.R |only
364 files changed, 52 insertions(+), 780 deletions(-)
Path: /cran/updated | permanent link
Title: Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
Diff between caTools versions 1.12 dated 2011-05-18 and 1.13 dated 2012-05-23
More information about caTools at CRAN
Description: Contains several basic utility functions including: moving
(rolling, running) window statistic functions, read/write for
GIF and ENVI binary files, fast calculation of AUC, LogitBoost
classifier, base64 encoder/decoder, round-off error free sum
and cumsum, etc.
Author: Jarek Tuszynski
Maintainer: Timothy P. Jurka
CHANGES | 11 ++++-------
DESCRIPTION | 12 +++++++-----
MD5 |only
NAMESPACE |only
man/GIF.Rd | 2 --
man/caTools-package.Rd | 9 +++------
man/colAUC.Rd | 2 --
man/trapz.Rd | 2 --
8 files changed, 14 insertions(+), 24 deletions(-)
Path: /cran/updated | permanent link
Title: Approximate probability densities by iterated Laplace
Approximations
Diff between iterLap versions 1.1-1 dated 2011-11-13 and 1.1-2 dated 2012-05-22
More information about iterLap at CRAN
Description: The iterLap (iterated Laplace approximation) algorithm
approximates a general (possibly non-normalized) probability
density on R^p, by repeated Laplace approximations to the
difference between current approximation and true density (on
log scale). The final approximation is a mixture of
multivariate normal distributions and might be used for example
as a proposal distribution for importance sampling (eg in
Bayesian applications). The algorithm can be seen as a
computational generalization of the Laplace approximation
suitable for skew or multimodal densities.
Author: Bjoern Bornkamp
Maintainer: Bjoern Bornkamp
DESCRIPTION | 28 +++++++++++++++-------------
MD5 | 12 ++++++------
R/iterLap.R | 13 ++-----------
inst/CITATION | 6 +++---
man/GRApprox.Rd | 2 +-
man/iterLap-package.Rd | 6 +++---
man/iterLap.Rd | 2 +-
7 files changed, 31 insertions(+), 38 deletions(-)
Path: /cran/updated | permanent link
Title: Generic Reproducible Parallel Backend for foreach Loops
Diff between doRNG versions 1.2.6 dated 2012-04-17 and 1.3 dated 2012-05-22
More information about doRNG at CRAN
Description: This package provides functions to perform reproducible
parallel foreach loops, using independent random streams as
generated by L'Ecuyer's combined multiple-recursive generator
[L'Ecuyer (1999)]. It enables to easily convert standard
%dopar% loops into fully reproducible loops, independently of
the number of workers, the task scheduling strategy, or the
chosen parallel environment and associated foreach backend.
Author: Renaud Gaujoux
Maintainer: Renaud Gaujoux
doRNG-1.2.6/doRNG/vignettes/Rpackages.bib |only
doRNG-1.3/doRNG/DESCRIPTION | 7 ++++---
doRNG-1.3/doRNG/MD5 | 23 +++++++++++------------
doRNG-1.3/doRNG/NAMESPACE | 5 +++--
doRNG-1.3/doRNG/R/doRNG-package.R | 1 +
doRNG-1.3/doRNG/R/doRNG.R | 1 +
doRNG-1.3/doRNG/inst/doc/doRNG-unitTests.Rnw | 18 +++++++++---------
doRNG-1.3/doRNG/inst/doc/doRNG-unitTests.pdf |binary
doRNG-1.3/doRNG/inst/doc/doRNG.pdf |binary
doRNG-1.3/doRNG/man/RNGseq.Rd | 2 ++
doRNG-1.3/doRNG/man/doRNG.Rd | 6 +++++-
doRNG-1.3/doRNG/vignettes/doRNG-unitTests.Rnw | 18 +++++++++---------
doRNG-1.3/doRNG/vignettes/src/doRNG.Rnw | 7 +++++++
13 files changed, 52 insertions(+), 36 deletions(-)
Path: /cran/updated | permanent link
Title: Manage and manipulate large collections of R objects stored as
tape-like files
Diff between rtape versions 2.0 dated 2012-04-25 and 2.1 dated 2012-05-22
More information about rtape at CRAN
Description: Storing huge data in RData format causes problems because
of the nessesity to load the whole file to the memory in order
to access and manipulate objects inside such file; rtape is a
simple solution to this problem. The package contains serveral
wrappers of R built-in serialize/unserialize mechanism allowing
user to quickly append objects to a tape-like file and later
iterate over them requiring only one copy of each stored object
to reside in memory a time.
Author: Miron B. Kursa
Maintainer: Miron B. Kursa
rtape-2.0/rtape/man/rtape_apply.Rd |only
rtape-2.1/rtape/DESCRIPTION | 8 ++++----
rtape-2.1/rtape/MD5 | 27 ++++++++++++++-------------
rtape-2.1/rtape/R/rtapeAdd.R | 2 +-
rtape-2.1/rtape/R/rtapeLapply.R | 2 +-
rtape-2.1/rtape/R/rtape_apply.R | 2 +-
rtape-2.1/rtape/R/shared.R |only
rtape-2.1/rtape/inst/NEWS | 4 ++++
rtape-2.1/rtape/man/guessFileFormat.Rd | 7 +++++--
rtape-2.1/rtape/man/makeFileFormat.Rd | 8 +++++---
rtape-2.1/rtape/man/rtape-sub-apply.Rd |only
rtape-2.1/rtape/man/rtapeAdd.Rd | 9 ++++++---
rtape-2.1/rtape/man/rtapeAsList.Rd | 7 +++++--
rtape-2.1/rtape/man/rtapeFilter.Rd | 7 +++++--
rtape-2.1/rtape/man/rtapeLapply.Rd | 7 +++++--
rtape-2.1/rtape/man/rtapeRerecord.Rd | 9 ++++++---
16 files changed, 62 insertions(+), 37 deletions(-)
Path: /cran/updated | permanent link
Title: RForcecom provides the connection to Force.com (Salesforce.com)
from R.
Diff between RForcecom versions 0.1 dated 2012-03-05 and 0.2 dated 2012-05-22
More information about RForcecom at CRAN
Description: RForcecom provides the connection to Force.com and
Salesforce.com from R.
Author: Takekatsu Hiramura
Maintainer: Takekatsu Hiramura
DESCRIPTION | 12 ++++----
MD5 | 34 +++++++++++++-----------
NAMESPACE | 2 +
R/rforcecom.api.R | 11 ++++++++
R/rforcecom.create.R | 49 ++++++++++++++++++++++++++++++------
R/rforcecom.delete.R | 24 +++++++++++++++--
R/rforcecom.getServerTimestamp.R |only
R/rforcecom.login.R | 20 ++++++++++++--
R/rforcecom.query.R | 24 ++++++++++++++---
R/rforcecom.retrieve.R | 4 ++
R/rforcecom.search.R | 24 +++++++++++++++--
R/rforcecom.update.R | 28 ++++++++++++++++++--
R/rforcecom.upsert.R | 28 ++++++++++++++++++--
man/RForcecom-package.Rd | 4 ++
man/rforcecom.api.Rd | 3 ++
man/rforcecom.create.Rd | 2 -
man/rforcecom.getServerTimestamp.Rd |only
man/rforcecom.update.Rd | 2 -
man/rforcecom.upsert.Rd | 4 +-
19 files changed, 222 insertions(+), 53 deletions(-)
Path: /cran/updated | permanent link
Title: SPARQL client
Diff between SPARQL versions 1.7 dated 2011-11-03 and 1.9 dated 2012-05-22
More information about SPARQL at CRAN
Description: Use SPARQL to pose SELECT or UPDATE queries to an
end-point.
Author: Willem Robert van Hage
Maintainer: Willem Robert van Hage
DESCRIPTION | 16 +-
MD5 | 11 +
NAMESPACE |only
R/SPARQL.R | 302 ++++++++++++++++++++++++++++++--------------------
man/SPARQL-package.Rd | 34 +++++
man/SPARQL.Rd | 33 ++++-
man/get_value.Rd |only
man/interpret_type.Rd |only
8 files changed, 259 insertions(+), 137 deletions(-)
Path: /cran/updated | permanent link
Title: An R package for changepoint analysis
Diff between changepoint versions 0.6.1 dated 2012-05-13 and 0.7 dated 2012-05-22
More information about changepoint at CRAN
Description: Implements various mainstream and specialised changepoint
methods for finding single and multiple changepoints within
data. Many popular non-parametric and frequentist methods are
included. The cpt.mean, cpt.var, cpt.meanvar functions should
be your first point of call.
Author: Rebecca Killick
Maintainer: Rebecca Killick
changepoint-0.6.1/changepoint/R/multiple.nonparametric.r |only
changepoint-0.6.1/changepoint/R/multiple.norm.r |only
changepoint-0.7/changepoint/DESCRIPTION | 6
changepoint-0.7/changepoint/MD5 | 37 +-
changepoint-0.7/changepoint/NAMESPACE | 12
changepoint-0.7/changepoint/NEWS | 4
changepoint-0.7/changepoint/R/cpt.R | 17
changepoint-0.7/changepoint/R/cpt.class.R | 25 +
changepoint-0.7/changepoint/R/decision.R | 2
changepoint-0.7/changepoint/R/gamma.R | 7
changepoint-0.7/changepoint/R/multiple.nonparametric.R |only
changepoint-0.7/changepoint/R/multiple.norm.R |only
changepoint-0.7/changepoint/R/poisson.R |only
changepoint-0.7/changepoint/man/PELT.meanvar.exp.Rd | 2
changepoint-0.7/changepoint/man/PELT.meanvar.poisson.Rd |only
changepoint-0.7/changepoint/man/binseg.meanvar.poisson.Rd |only
changepoint-0.7/changepoint/man/changepoint-package.Rd | 2
changepoint-0.7/changepoint/man/cpt.meanvar.Rd | 4
changepoint-0.7/changepoint/man/multiple.meanvar.poisson.Rd |only
changepoint-0.7/changepoint/man/segneigh.meanvar.poisson.Rd |only
changepoint-0.7/changepoint/man/single.meanvar.exp.Rd | 2
changepoint-0.7/changepoint/man/single.meanvar.exp.calc.Rd | 4
changepoint-0.7/changepoint/man/single.meanvar.poisson.Rd |only
changepoint-0.7/changepoint/man/single.meanvar.poisson.calc.Rd |only
changepoint-0.7/changepoint/src/PELT.c | 179 +++++++++-
25 files changed, 268 insertions(+), 35 deletions(-)
Path: /cran/updated | permanent link
Title: Robust Ordinal Regression MCDA library
Diff between ror versions 0.6.1 dated 2011-12-31 and 0.8 dated 2012-05-22
More information about ror at CRAN
Description: An R package for computing both exact- and stochastic
robust ordinal regression and maximal vectors.
Author: Tommi Tervonen
Maintainer: Tommi Tervonen
ror-0.6.1/ror/inst/java/libror-0.4.1-jar-with-dependencies.jar |only
ror-0.8/ror/DESCRIPTION | 11 +-
ror-0.8/ror/MD5 | 20 ++--
ror-0.8/ror/NAMESPACE | 4
ror-0.8/ror/R/commonsmath-utagms.R | 4
ror-0.8/ror/R/maximalvector.R |only
ror-0.8/ror/R/ror_common.R | 8 -
ror-0.8/ror/R/rorsmaa.R | 48 +---------
ror-0.8/ror/R/vf.R |only
ror-0.8/ror/inst/java/libror-0.8-jar-with-dependencies.jar |only
ror-0.8/ror/man/gibbs.Rd |only
ror-0.8/ror/man/maximalvectors.Rd |only
ror-0.8/ror/man/maximalvectors.indices.Rd |only
ror-0.8/ror/man/rejection.Rd |only
ror-0.8/ror/man/ror-package.Rd | 7 +
15 files changed, 39 insertions(+), 63 deletions(-)
Path: /cran/updated | permanent link
Title: Spatial Probit Models
Diff between spatialprobit versions 0.9-1 dated 2012-02-19 and 0.9-2 dated 2012-05-22
More information about spatialprobit at CRAN
Description: Bayesian Estimation of Spatial Probit Models
Author: Stefan Wilhelm
Maintainer: Stefan Wilhelm
DESCRIPTION | 8 +-
MD5 | 9 +-
NAMESPACE | 9 +-
NEWS | 4 +
R/SpatialProbit-MCMC.R | 161 ++++++++++++++++++++++++++++++++++++++++++-------
man/c.sarprobit.Rd |only
6 files changed, 159 insertions(+), 32 deletions(-)
Path: /cran/updated | permanent link
Title: Low-memory Multinomial Logistic Regression with Support for Text
Classification
Diff between maxent versions 1.3.1 dated 2011-12-22 and 1.3.2 dated 2012-05-22
More information about maxent at CRAN
Description: maxent is an R package with tools for low-memory
multinomial logistic regression, also known as maximum entropy.
The focus of this maximum entropy classifier is to minimize
memory consumption on very large datasets, particularly sparse
document-term matrices represented by the tm package. The
classifier is based on an efficient C++ implementation written
by Dr. Yoshimasa Tsuruoka.
Author: Timothy P. Jurka, Yoshimasa Tsuruoka
Maintainer: Timothy P. Jurka
ChangeLog | 5 +++++
DESCRIPTION | 18 ++++++++++++------
MD5 | 8 ++++----
src/Makevars | 2 +-
src/Makevars.win | 2 +-
5 files changed, 23 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Title: Statistical inference of C- and D-vine copulas
Diff between CDVine versions 1.1-6 dated 2012-05-14 and 1.1-7 dated 2012-05-22
More information about CDVine at CRAN
Description: This package provides functions for statistical inference
of canonical vine (C-vine) and D-vine copulas. It contains
tools for bivariate exploratory data analysis and for bivariate
as well as vine copula selection. Models can be estimated
either sequentially or by joint maximum likelihood estimation.
Sampling algorithms and plotting methods are also included.
Data is assumed to lie in the unit hypercube (so-called copula
data).
Author: Ulf Schepsmeier, Eike Christian Brechmann
Maintainer: Ulf Schepsmeier, Eike Christian Brechmann
CDVine.pdf |binary
DESCRIPTION | 8 ++++----
MD5 | 20 ++++++++++----------
R/BiCopSelect.r | 9 +++++----
inst/ChangeLog | 9 +++++++++
inst/doc/CDVine-package.pdf |binary
man/BiCopChiPlot.Rd | 2 +-
man/BiCopKPlot.Rd | 2 +-
man/BiCopLambda.Rd | 4 ++--
man/BiCopPar2Tau.Rd | 4 ++--
man/CDVine-package.Rd | 4 ++--
11 files changed, 36 insertions(+), 26 deletions(-)
Path: /cran/updated | permanent link
Title: Retrieve Oklahoma Mesonet climatological data
Diff between okmesonet versions 0.1.2 dated 2012-05-02 and 0.1.3 dated 2012-05-21
More information about okmesonet at CRAN
Description: okmesonet retrieves and summarizes Oklahoma (USA) Mesonet
climatological data provided by the Oklahoma Climatological
Survey. Measurements are recorded every five minutes at
approximately 120 stations throughout Oklahoma and are
available in near real-time.
Author: Brady Allred, Torre Hovick, Samuel Fuhlendorf
Maintainer: Brady Allred
DESCRIPTION | 8 ++---
MD5 | 16 +++++------
NEWS | 8 +++++
R/okmts.R | 70 ++++++++++++++++++++++------------------------------
R/totalprecip.R | 4 +-
R/updatestn.R | 8 +++++
data/okstations.rda |binary
man/okmts.Rd | 3 --
man/updatestn.Rd | 6 ++++
9 files changed, 66 insertions(+), 57 deletions(-)
Path: /cran/updated | permanent link
Title: Rcpp integration for Armadillo templated linear algebra library
Diff between RcppArmadillo versions 0.3.0.3 dated 2012-05-04 and 0.3.2.0 dated 2012-05-21
More information about RcppArmadillo at CRAN
Description: R and Armadillo integration using Rcpp Armadillo is a
templated C++ linear algebra library (by Conrad Sanderson) that
aims towards a good balance between speed and ease of use.
Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions.
Various matrix decompositions are provided through optional
integration with LAPACK and ATLAS libraries.
A delayed evaluation approach is employed (during compile time) to
combine several operations into one, and to reduce (or
eliminate) the need for temporaries. This is accomplished
through recursive templates and template meta-programming.
This library is useful if C++ has been decided as the language of
choice (due to speed and/or integration capabilities), rather
than another language.
The RcppArmadillo package includes the header files from the templated
Armadillo library (currently version 3.2.0). Thus users do not
need to install Armadillo itself in order to use RcppArmadillo.
This Armadillo integration provides a nice illustration of the
capabilities of the Rcpp package for seamless R and C++
integration.
Armadillo is licensed under the GNU LGPL version 3 or later, while
RcppArmadillo (the Rcpp bindings/bridge to Armadillo) is
licenses under the GNU GPL version 2 or later, as is the rest
of Rcpp.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Romain Francois, Dirk Eddelbuettel and Doug Bates
ChangeLog | 20
DESCRIPTION | 10
MD5 | 191 ++--
inst/NEWS | 34
inst/include/RcppArmadillo/Mat_meat.h | 6
inst/include/armadillo | 15
inst/include/armadillo_bits/Base_bones.hpp | 29
inst/include/armadillo_bits/Base_meat.hpp | 46 +
inst/include/armadillo_bits/Col_bones.hpp | 29
inst/include/armadillo_bits/Col_meat.hpp | 196 +---
inst/include/armadillo_bits/Cube_bones.hpp | 4
inst/include/armadillo_bits/Cube_meat.hpp | 38
inst/include/armadillo_bits/Gen_bones.hpp | 17
inst/include/armadillo_bits/Gen_meat.hpp | 76 -
inst/include/armadillo_bits/Mat_bones.hpp | 53 -
inst/include/armadillo_bits/Mat_meat.hpp | 482 ++++-------
inst/include/armadillo_bits/Proxy.hpp | 288 ++++++
inst/include/armadillo_bits/Row_bones.hpp | 30
inst/include/armadillo_bits/Row_meat.hpp | 198 +---
inst/include/armadillo_bits/arma_version.hpp | 6
inst/include/armadillo_bits/auxlib_bones.hpp | 27
inst/include/armadillo_bits/auxlib_meat.hpp | 535 +++++++-----
inst/include/armadillo_bits/config.hpp | 71 -
inst/include/armadillo_bits/debug.hpp | 4
inst/include/armadillo_bits/diagmat_proxy.hpp | 348 ++++++--
inst/include/armadillo_bits/diagview_bones.hpp | 12
inst/include/armadillo_bits/diagview_meat.hpp | 408 ++++++---
inst/include/armadillo_bits/diskio_bones.hpp | 7
inst/include/armadillo_bits/diskio_meat.hpp | 157 +++
inst/include/armadillo_bits/eGlue_bones.hpp | 4
inst/include/armadillo_bits/eGlue_meat.hpp | 16
inst/include/armadillo_bits/eOp_bones.hpp | 4
inst/include/armadillo_bits/eOp_meat.hpp | 4
inst/include/armadillo_bits/eglue_core_bones.hpp | 41
inst/include/armadillo_bits/eglue_core_meat.hpp | 62 -
inst/include/armadillo_bits/eop_core_meat.hpp | 91 +-
inst/include/armadillo_bits/field_meat.hpp | 11
inst/include/armadillo_bits/fn_accu.hpp | 10
inst/include/armadillo_bits/fn_cumsum.hpp | 42 -
inst/include/armadillo_bits/fn_det.hpp | 12
inst/include/armadillo_bits/fn_eig.hpp | 30
inst/include/armadillo_bits/fn_log_det.hpp | 4
inst/include/armadillo_bits/fn_max.hpp | 70 -
inst/include/armadillo_bits/fn_mean.hpp | 72 -
inst/include/armadillo_bits/fn_median.hpp | 34
inst/include/armadillo_bits/fn_min.hpp | 70 -
inst/include/armadillo_bits/fn_norm.hpp | 22
inst/include/armadillo_bits/fn_princomp.hpp | 32
inst/include/armadillo_bits/fn_prod.hpp | 69 -
inst/include/armadillo_bits/fn_rank.hpp | 8
inst/include/armadillo_bits/fn_sort_index.hpp | 15
inst/include/armadillo_bits/fn_stddev.hpp | 36
inst/include/armadillo_bits/fn_strans.hpp | 48 -
inst/include/armadillo_bits/fn_sum.hpp | 80 -
inst/include/armadillo_bits/fn_trace.hpp | 4
inst/include/armadillo_bits/fn_trans.hpp | 40
inst/include/armadillo_bits/fn_unique.hpp |only
inst/include/armadillo_bits/fn_var.hpp | 36
inst/include/armadillo_bits/forward_bones.hpp | 7
inst/include/armadillo_bits/glue_mixed_meat.hpp | 159 ++-
inst/include/armadillo_bits/glue_relational_meat.hpp | 4
inst/include/armadillo_bits/glue_solve_bones.hpp | 2
inst/include/armadillo_bits/glue_solve_meat.hpp | 17
inst/include/armadillo_bits/glue_times_meat.hpp | 7
inst/include/armadillo_bits/lapack_bones.hpp | 33
inst/include/armadillo_bits/lapack_wrapper.hpp | 65 +
inst/include/armadillo_bits/op_cumsum_meat.hpp | 12
inst/include/armadillo_bits/op_diagmat_meat.hpp | 109 +-
inst/include/armadillo_bits/op_dot_meat.hpp | 46 -
inst/include/armadillo_bits/op_hist_meat.hpp | 4
inst/include/armadillo_bits/op_htrans_bones.hpp | 48 -
inst/include/armadillo_bits/op_htrans_meat.hpp | 368 ++++++++
inst/include/armadillo_bits/op_princomp_bones.hpp | 104 +-
inst/include/armadillo_bits/op_princomp_meat.hpp | 136 ++-
inst/include/armadillo_bits/op_relational_meat.hpp | 8
inst/include/armadillo_bits/op_reshape_meat.hpp | 54 -
inst/include/armadillo_bits/op_shuffle_meat.hpp | 36
inst/include/armadillo_bits/op_sort_meat.hpp | 8
inst/include/armadillo_bits/op_stddev_meat.hpp | 8
inst/include/armadillo_bits/op_strans_bones.hpp | 40
inst/include/armadillo_bits/op_strans_meat.hpp | 530 +++++++++++-
inst/include/armadillo_bits/op_sum_bones.hpp | 6
inst/include/armadillo_bits/op_sum_meat.hpp | 7
inst/include/armadillo_bits/op_symmat_meat.hpp | 16
inst/include/armadillo_bits/op_trimat_bones.hpp | 4
inst/include/armadillo_bits/op_trimat_meat.hpp | 10
inst/include/armadillo_bits/op_unique_bones.hpp |only
inst/include/armadillo_bits/op_unique_meat.hpp |only
inst/include/armadillo_bits/op_var_meat.hpp | 8
inst/include/armadillo_bits/operator_times.hpp | 2
inst/include/armadillo_bits/podarray_bones.hpp | 10
inst/include/armadillo_bits/podarray_meat.hpp | 115 +-
inst/include/armadillo_bits/running_stat_meat.hpp | 2
inst/include/armadillo_bits/subview_bones.hpp | 10
inst/include/armadillo_bits/subview_elem1_meat.hpp | 162 +--
inst/include/armadillo_bits/subview_meat.hpp | 784 +++++++++----------
inst/include/armadillo_bits/traits.hpp | 19
inst/include/armadillo_bits/unwrap.hpp | 727 ++++++++++++-----
98 files changed, 4958 insertions(+), 3033 deletions(-)
Path: /cran/updated | permanent link
Title: Permutation Distribution Clustering
Diff between pdc versions 0.2 dated 2012-04-23 and 0.3 dated 2012-05-21
More information about pdc at CRAN
Description: Permutation Distribution Clustering is a clustering method
for time series. Dissimilarity of time series is formalized as
the divergence between their permutation distributions. The
permutation distribution was proposed as measure of the
complexity of a time series.
Author: Andreas M. Brandmaier
Maintainer: Andreas M. Brandmaier
pdc-0.2/pdc/R/codeword2.R |only
pdc-0.2/pdc/R/codeword3.R |only
pdc-0.2/pdc/R/codeword4.R |only
pdc-0.2/pdc/R/codeword5.R |only
pdc-0.2/pdc/R/codeword6.R |only
pdc-0.2/pdc/R/codeword7.R |only
pdc-0.3/pdc/ChangeLog | 4 ++
pdc-0.3/pdc/DESCRIPTION | 8 ++--
pdc-0.3/pdc/MD5 | 41 +++++++++++++-----------
pdc-0.3/pdc/NAMESPACE | 2 +
pdc-0.3/pdc/R/codebook.R | 43 ++++++++++++++++----------
pdc-0.3/pdc/R/convert.matrix.R | 15 ++++-----
pdc-0.3/pdc/R/convert.matrix.multichannel.R |only
pdc-0.3/pdc/R/divergencematrix.multichannel.R |only
pdc-0.3/pdc/R/entropy.heuristic.R | 6 +++
pdc-0.3/pdc/R/pdc.dist.R | 29 +++++++++++++++--
pdc-0.3/pdc/R/pdclust.R | 1
pdc-0.3/pdc/R/plot.mine.R | 16 +++++++--
pdc-0.3/pdc/R/plot.pdclust.R | 10 ++++--
pdc-0.3/pdc/man/codebook.Rd | 4 +-
pdc-0.3/pdc/man/entropy.heuristic.Rd | 12 +++++++
pdc-0.3/pdc/man/pdclust.Rd | 18 +++++++---
pdc-0.3/pdc/src |only
23 files changed, 147 insertions(+), 62 deletions(-)
Path: /cran/updated | permanent link
Title: Generalized Nonlinear Models
Diff between gnm versions 1.0-1 dated 2011-03-01 and 1.0-2 dated 2012-05-21
More information about gnm at CRAN
Description: Functions to specify and fit generalized nonlinear models,
including models with multiplicative interaction terms such as
the UNIDIFF model from sociology and the AMMI model from crop
science, and many others. Over-parameterized representations
of models are used throughout; functions are provided for
inference on estimable parameter combinations, as well as
standard methods for diagnostics etc.
Author: Heather Turner and David Firth
Maintainer: Heather Turner
gnm-1.0-1/gnm/examples |only
gnm-1.0-1/gnm/inst/doc/.Rhistory |only
gnm-1.0-1/gnm/inst/doc/.directory |only
gnm-1.0-1/gnm/inst/doc/fig-Effect_plots.pdf |only
gnm-1.0-1/gnm/inst/doc/fig-LCall.pdf |only
gnm-1.0-1/gnm/inst/doc/fig-LCover45.pdf |only
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gnm-1.0-1/gnm/inst/doc/fig-deaths1921-1940.pdf |only
gnm-1.0-1/gnm/inst/doc/fig-profilePlot.pdf |only
gnm-1.0-1/gnm/inst/doc/gnm.bib |only
gnm-1.0-1/gnm/tests/bwt.R.orig |only
gnm-1.0-2/gnm/DESCRIPTION | 8 +--
gnm-1.0-2/gnm/MD5 |only
gnm-1.0-2/gnm/R/gnmFit.R | 16 +++++-
gnm-1.0-2/gnm/R/gnmTerms.R | 6 +-
gnm-1.0-2/gnm/R/gnmTools.R | 58 +++++++++++++++----------
gnm-1.0-2/gnm/R/predict.gnm.R | 2
gnm-1.0-2/gnm/R/print.meanResiduals.R | 2
gnm-1.0-2/gnm/R/print.summary.gnm.R | 4 -
gnm-1.0-2/gnm/R/summary.meanResiduals.R | 4 -
gnm-1.0-2/gnm/R/update.gnm.R | 22 ++++++---
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gnm-1.0-2/gnm/data/yaish.rda |binary
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gnm-1.0-2/gnm/man/nonlin.function.Rd | 3 -
gnm-1.0-2/gnm/tests/logexcess.Rout.save | 8 ++-
gnm-1.0-2/gnm/tests/logistic.Rout.save | 10 +++-
gnm-1.0-2/gnm/tests/nls.Rout.save | 10 +++-
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43 files changed, 141 insertions(+), 54 deletions(-)
Path: /cran/updated | permanent link
Title: FastICA Algorithms to perform ICA and Projection Pursuit
Diff between fastICA versions 1.1-15 dated 2012-05-17 and 1.1-16 dated 2012-05-21
More information about fastICA at CRAN
Description: Implementation of FastICA algorithm to perform Independent
Component Analysis (ICA) and Projection Pursuit.
Author: J L Marchini
Maintainer: Brian Ripley
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/fastICA.R | 2 +-
3 files changed, 7 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: Categorical Data
Diff between catdata versions 1.0 dated 2012-02-03 and 1.1 dated 2012-05-21
More information about catdata at CRAN
Description: This R-package contains examples from the book "Regression
for Categorical Data", Tutz 2011, Cambridge University Press.
The names of the examples refer to the chapter and the data set
that is used.
Author: Gerhard Tutz, Gunther Schauberger
Maintainer: Gunther Schauberger
DESCRIPTION | 9
MD5 | 200 +++++++++---------
inst/doc/altbin-teratology.Rnw | 6
inst/doc/altbin-teratology.pdf |binary
inst/doc/binary-unemployment.pdf |binary
inst/doc/binary-vaso.pdf |binary
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inst/doc/count-children.pdf |binary
inst/doc/count-encephalitis.Rnw | 5
inst/doc/count-encephalitis.pdf |binary
inst/doc/count-insolvency.Rnw | 2
inst/doc/count-insolvency.pdf |binary
inst/doc/count-medcare.Rnw | 23 +-
inst/doc/count-medcare.pdf |binary
inst/doc/loglinear-birth.Rnw | 24 +-
inst/doc/loglinear-birth.pdf |binary
inst/doc/loglinear-leukoplakia.Rnw | 6
inst/doc/loglinear-leukoplakia.pdf |binary
inst/doc/modbin-dust.Rnw | 6
inst/doc/modbin-dust.pdf |binary
inst/doc/modbin-foodstamp.pdf |binary
inst/doc/modbin-unemployment1.Rnw | 15 -
inst/doc/modbin-unemployment1.pdf |binary
inst/doc/modbin-unemployment2.Rnw | 19 +
inst/doc/modbin-unemployment2.pdf |binary
inst/doc/multinomial-addiction1.Rnw | 25 +-
inst/doc/multinomial-addiction1.pdf |binary
inst/doc/multinomial-addiction2.Rnw | 6
inst/doc/multinomial-addiction2.pdf |binary
inst/doc/multinomial-party1.Rnw | 18 +
inst/doc/multinomial-party1.pdf |binary
inst/doc/multinomial-party2.Rnw | 24 +-
inst/doc/multinomial-party2.pdf |binary
inst/doc/multinomial-travel.Rnw | 17 +
inst/doc/multinomial-travel.pdf |binary
inst/doc/multivariate-birth1.Rnw | 7
inst/doc/multivariate-birth1.pdf |binary
inst/doc/multivariate-birth2.Rnw | 19 +
inst/doc/multivariate-birth2.pdf |binary
inst/doc/multivariate-knee.Rnw | 2
inst/doc/multivariate-knee.pdf |binary
inst/doc/ordinal-arthritis.Rnw | 11 -
inst/doc/ordinal-arthritis.pdf |binary
inst/doc/ordinal-knee1.Rnw | 11 -
inst/doc/ordinal-knee1.pdf |binary
inst/doc/ordinal-knee2.Rnw | 26 +-
inst/doc/ordinal-knee2.pdf |binary
inst/doc/ordinal-retinopathy1.Rnw | 4
inst/doc/ordinal-retinopathy1.pdf |binary
inst/doc/ordinal-retinopathy2.Rnw | 17 +
inst/doc/ordinal-retinopathy2.pdf |binary
inst/doc/prediction-medcare.Rnw | 55 +++--
inst/doc/prediction-medcare.pdf |binary
inst/doc/random-aids.Rnw | 8
inst/doc/random-aids.pdf |binary
inst/doc/random-betablocker.Rnw | 34 +--
inst/doc/random-betablocker.pdf |binary
inst/doc/random-knee1.pdf |binary
inst/doc/random-knee2.Rnw | 14 -
inst/doc/random-knee2.pdf |binary
inst/doc/random-knee3.Rnw | 17 -
inst/doc/random-knee3.pdf |binary
inst/doc/regsel-heartdisease1.Rnw | 157 ++++----------
inst/doc/regsel-heartdisease1.pdf |binary
inst/doc/regsel-heartdisease2.Rnw | 82 +------
inst/doc/regsel-heartdisease2.pdf |binary
inst/doc/regsel-heartdisease3.Rnw | 83 ++-----
inst/doc/regsel-heartdisease3.pdf |binary
inst/doc/regsel-heartdisease4.Rnw | 49 +---
inst/doc/regsel-heartdisease4.pdf |binary
inst/doc/regsel-heartdisease5.Rnw | 56 +----
inst/doc/regsel-heartdisease5.pdf |binary
inst/doc/regsel-heartdisease6.Rnw | 106 +++-------
inst/doc/regsel-heartdisease6.pdf |binary
inst/doc/semiparametric-addiction.Rnw | 26 +-
inst/doc/semiparametric-addiction.pdf |binary
inst/doc/semiparametric-children.Rnw | 5
inst/doc/semiparametric-children.pdf |binary
inst/doc/semiparametric-dust.Rnw | 8
inst/doc/semiparametric-dust.pdf |binary
inst/doc/semiparametric-unemployment.Rnw | 14 -
inst/doc/semiparametric-unemployment.pdf |binary
inst/doc/tree-dust.Rnw | 11 -
inst/doc/tree-dust.pdf |binary
inst/doc/tree-unemployment.Rnw | 10
inst/doc/tree-unemployment.pdf |binary
man/addiction.Rd | 7
man/aids.Rd | 2
man/birth.Rd | 39 +--
man/catdata-package.Rd | 328 ++++++++++++++++---------------
man/children.Rd | 3
man/deathpenalty.Rd | 2
man/dust.Rd | 2
man/encephalitis.Rd | 2
man/heart.Rd | 5
man/knee.Rd | 2
man/medcare.Rd | 3
man/reader.Rd | 7
man/teratology2.Rd | 3
man/unemployment.Rd | 6
man/vaso.Rd | 1
101 files changed, 831 insertions(+), 837 deletions(-)
Path: /cran/updated | permanent link
Title: Sparse grid integration in R
Diff between SparseGrid versions 0.8.0 dated 2011-12-15 and 0.8.1 dated 2012-05-21
More information about SparseGrid at CRAN
Description: SparseGrid is a package to create sparse grids for
numerical integration, based on code from www.sparse-grids.de
Author: Jelmer Ypma
Maintainer: Jelmer Ypma
CHANGELOG |only
DESCRIPTION | 13 ++++-----
MD5 | 14 +++++----
R/createIntegrationGrid.R | 4 +-
R/createProductRuleGrid.R | 51 ++++++++++++++++++++++-------------
R/createSparseGrid.R | 60 ++++++++++++++++++++++++++----------------
inst/doc/SparseGrid.pdf |binary
inst/tests/KPN_demo.R |only
inst/tests/demo_userdefined.R | 8 ++---
9 files changed, 91 insertions(+), 59 deletions(-)
Path: /cran/updated | permanent link
Title: Full feature implementation of hash/associated
arrays/dictionaries
Description: This package implements a data structure similar to hashes
in Perl and dictionaries in Python but with a purposefully R
flavor. For objects of appreciable size, access using hashes
outperforms native named lists and vectors.
Author: Christopher Brown
Maintainer: ORPHANED
Diff between hash versions 2.1.0.2 dated 2012-04-20 and 2.2.3 dated 2012-05-21
hash-2.1.0.2/hash/.R.Rout |only hash-2.2.3/hash/ChangeLog | 5 +++++ hash-2.2.3/hash/DESCRIPTION | 17 +++++++++++------ hash-2.2.3/hash/MD5 | 16 ++++++++-------- hash-2.2.3/hash/R/zzz.R | 3 +-- hash-2.2.3/hash/man/copy.Rd | 7 +++++++ hash-2.2.3/hash/man/hash-accessors.Rd | 2 +- hash-2.2.3/hash/man/hash-package.Rd | 16 ++++------------ hash-2.2.3/hash/man/hash.Rd | 2 +- hash-2.2.3/hash/man/keys.Rd | 2 +- 10 files changed, 39 insertions(+), 31 deletions(-)
More information about hash at CRAN
Path: /cran/updated | permanent link
Title: Functional time series analysis
Diff between ftsa versions 3.1 dated 2012-02-01 and 3.2 dated 2012-05-21
More information about ftsa at CRAN
Description: Functions for functional time series
Author: Rob J Hyndman and Han Lin Shang
Maintainer: Han Lin Shang
ftsa-3.1/ftsa/R/quantile.R |only
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ftsa-3.2/ftsa/DESCRIPTION | 10 +++++-----
ftsa-3.2/ftsa/MD5 | 27 ++++++++++-----------------
ftsa-3.2/ftsa/NAMESPACE | 10 ++++------
ftsa-3.2/ftsa/R/MISE.r | 14 +++++++-------
ftsa-3.2/ftsa/R/forecast.ftsm.R | 30 +++++++++++++++---------------
ftsa-3.2/ftsa/R/forecast.ftsm2.R | 26 +++++++++++++-------------
ftsa-3.2/ftsa/R/ftsm.R | 16 ++++++++--------
ftsa-3.2/ftsa/R/plot.fmres.R | 2 +-
ftsa-3.2/ftsa/man/sd.fts.Rd | 10 +++++-----
ftsa-3.2/ftsa/man/var.fts.Rd | 10 +++++-----
18 files changed, 77 insertions(+), 82 deletions(-)
Path: /cran/updated | permanent link
Title: Utilities and kinship information for Behavior Genetics and
Developmental research using the NLSY.
Diff between NlsyLinks versions 1.0 dated 2012-04-27 and 1.003 dated 2012-05-21
More information about NlsyLinks at CRAN
Description: Utilities and kinship information for Behavioral Genetics
and Developmental research using the NLSY.
Author: Will Beasley, Joe Rodgers, David Bard, and Kelly Meredith
Maintainer: Will Beasley
DESCRIPTION | 8 +--
MD5 | 22 +++++-----
NEWS | 13 ++++++
data/Links79Pair.rda |binary
data/Links79PairExpanded.rda |binary
inst/doc/Faq.Rnw |only
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inst/doc/NlsyAce.pdf |binary
inst/tests/AceDFFixture.R | 72 +++++++++++++++++-----------------
inst/tests/AceLavaanGroupFixture.R | 17 ++++----
inst/tests/AcePreparationFixture.R | 56 +++++++++++++-------------
inst/tests/CreatePairDatasetFixture.R | 4 -
man/NlsyLinks-package.Rd | 4 -
13 files changed, 108 insertions(+), 88 deletions(-)
Path: /cran/updated | permanent link
Title: Statistical Analysis and Data Display: Heiberger and Holland
Diff between HH versions 2.2-23 dated 2011-12-24 and 2.3-15 dated 2012-05-21
More information about HH at CRAN
Description: Support software for Statistical Analysis and Data Display
(Springer, ISBN 0-387-40270-5). This contemporary presentation
of statistical methods features extensive use of graphical
displays for exploring data and for displaying the analysis.
The authors demonstrate how to analyze data---showing code,
graphics, and accompanying computer listings---for all the
methods they cover. They emphasize how to construct and
interpret graphs, discuss principles of graphical design, and
show how accompanying traditional tabular results are used to
confirm the visual impressions derived directly from the
graphs. Many of the graphical formats are novel and appear here
for the first time in print. All chapters have exercises.
Author: Richard M. Heiberger
Maintainer: Richard M. Heiberger
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HH-2.3-15/HH/MD5 | 453 +++++++---
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HH-2.3-15/HH/R/F.curve.R | 4
HH-2.3-15/HH/R/HH_regsubsets.R | 12
HH-2.3-15/HH/R/ResizeEtc.R | 21
HH-2.3-15/HH/R/ae.dotplot.R | 2
HH-2.3-15/HH/R/anova.mean.R | 5
HH-2.3-15/HH/R/aov.sufficient.R | 16
HH-2.3-15/HH/R/as.likert.R | 108 +-
HH-2.3-15/HH/R/as.matrix.listOfMatrices.R | 41
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HH-2.3-15/HH/R/chisq.curve.R | 4
HH-2.3-15/HH/R/combineTwoColumns.R | 56 +
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HH-2.3-15/HH/R/glht.mmc.R | 156 ++-
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HH-2.3-15/HH/R/interaction2wt.R | 2
HH-2.3-15/HH/R/intxplot.s | 4
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HH-2.3-15/HH/R/likert.R | 509 +++++++----
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HH-2.3-15/HH/R/multicomp.mmc.R | 2
HH-2.3-15/HH/R/norm.curve.R | 30
HH-2.3-15/HH/R/odds.ratio.R | 14
HH-2.3-15/HH/R/panel.axis.right.R | 139 +++
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HH-2.3-15/HH/R/panel.interaction2wt.R | 4
HH-2.3-15/HH/R/persp.hh.R | 40
HH-2.3-15/HH/R/plot.hov.R | 18
HH-2.3-15/HH/R/plot.mmc.multicomp.R | 16
HH-2.3-15/HH/R/plot.multicomp.R | 33
HH-2.3-15/HH/R/print.TwoTrellisColumns.R |only
HH-2.3-15/HH/R/pyramidLikert.R | 110 +-
HH-2.3-15/HH/R/regr2.plot.R | 8
HH-2.3-15/HH/R/residual.plots.s | 27
HH-2.3-15/HH/R/t.trellis.R | 20
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HH-2.3-15/HH/data/yatesppl.rda |binary
HH-2.3-15/HH/demo/MMC.WoodEnergy-aov.R | 14
HH-2.3-15/HH/demo/MMC.WoodEnergy.R | 6
HH-2.3-15/HH/demo/MMC.apple.R | 15
HH-2.3-15/HH/demo/MMC.catalystm.R | 10
HH-2.3-15/HH/demo/MMC.cc176.R | 12
HH-2.3-15/HH/demo/MMC.pulmonary.R | 47 -
HH-2.3-15/HH/demo/PoorChildren.r | 239 ++---
HH-2.3-15/HH/demo/arima.sim.XYZ.r | 45 -
HH-2.3-15/HH/demo/likert-paper.r | 161 ++-
HH-2.3-15/HH/demo/nottem.r | 8
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HH-2.3-15/HH/demo/tsq.r | 18
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HH-2.3-15/HH/inst/data_setup/interaction2wt-new.R | 2
HH-2.3-15/HH/inst/data_setup/njgolf-read.r | 6
HH-2.3-15/HH/inst/data_setup/readHHdata.R | 526 +++++++++--
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HH-2.3-15/HH/man/HH_regsubsets.Rd | 26
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HH-2.3-15/HH/man/X.residuals.Rd | 6
HH-2.3-15/HH/man/ae.dotplot.Rd | 6
HH-2.3-15/HH/man/ancova.Rd | 8
HH-2.3-15/HH/man/anova.mean.Rd | 25
HH-2.3-15/HH/man/aov.sufficient.Rd | 65 -
HH-2.3-15/HH/man/as.likert.Rd | 35
HH-2.3-15/HH/man/as.matrix.listOfMatrices.Rd | 16
HH-2.3-15/HH/man/as.multicomp.Rd | 16
HH-2.3-15/HH/man/combineTwoColumns.Rd | 19
HH-2.3-15/HH/man/cp.Rd | 8
HH-2.3-15/HH/man/datasets.Rd | 6
HH-2.3-15/HH/man/emptyMainLeftAxisLeftStripBottomLegend.Rd | 16
HH-2.3-15/HH/man/extra.Rd | 11
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HH-2.3-15/HH/man/hh.Rd | 4
HH-2.3-15/HH/man/hov.Rd | 9
HH-2.3-15/HH/man/interaction2wt.Rd | 5
HH-2.3-15/HH/man/intxplot.Rd | 9
HH-2.3-15/HH/man/ladder.Rd | 83 -
HH-2.3-15/HH/man/likert.Rd | 577 ++++++++-----
HH-2.3-15/HH/man/likertColor.Rd |only
HH-2.3-15/HH/man/lm.case.Rd | 36
HH-2.3-15/HH/man/lmatRows.Rd | 6
HH-2.3-15/HH/man/mmc.Rd | 160 +--
HH-2.3-15/HH/man/mmc.mean.Rd | 18
HH-2.3-15/HH/man/multicomp.order.Rd | 11
HH-2.3-15/HH/man/norm.curve.Rd | 38
HH-2.3-15/HH/man/odds.ratio.Rd | 34
HH-2.3-15/HH/man/panel.axis.right.Rd | 25
HH-2.3-15/HH/man/panel.cartesian.Rd | 17
HH-2.3-15/HH/man/persp.plane.Rd | 25
HH-2.3-15/HH/man/plot.hov.Rd | 32
HH-2.3-15/HH/man/plot.mmc.multicomp.Rd | 14
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HH-2.3-15/HH/man/pyramidLikert.Rd | 72 +
HH-2.3-15/HH/man/regr1.plot.Rd | 2
HH-2.3-15/HH/man/regr2.plot.Rd | 2
HH-2.3-15/HH/man/resid.squares.Rd | 3
HH-2.3-15/HH/man/seqplot.forecast.Rd | 19
HH-2.3-15/HH/man/tsdiagplot.Rd | 3
HH-2.3-15/HH/man/vif.Rd | 6
141 files changed, 3145 insertions(+), 1771 deletions(-)
Path: /cran/updated | permanent link
Title: R interface to the Vowpal Wabbit
Diff between RVowpalWabbit versions 0.0.4 dated 2011-09-26 and 0.0.5 dated 2012-05-20
More information about RVowpalWabbit at CRAN
Description: R interface to Vowpal Wabbit fast out-of-core learning
system The Vowpal Wabbit (VW) project is a fast out-of-core
learning system sponsored by Yahoo! Research and written by
John Langford along with a number of contributors.
There are two ways to have a fast learning algorithm: (a) start with a
slow algorithm and speed it up, or (b) build an intrinsically
fast learning algorithm. This project is about approach (b),
and it has reached a state where it may be useful to others as
a platform for research and experimentation.
There are several optimization algorithms available with the baseline
being sparse gradient descent (GD) on a loss function (several
are available). The code should be easily usable. Its only
external dependence is on the Boost library, which is often
installed by default.
This R package does not include the distributed computing
implementation of the cluster/ directory of the upstream
sources. Use of the software as a network servie is also not
directly supported as the aim is a simpler direct call from R
for validation and comparison.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
ChangeLog | 24 +++++
DESCRIPTION | 8 -
MD5 | 68 +++++++--------
cleanup | 3
configure | 210 +++++++++++++++++++++++++----------------------
configure.in | 44 ++++-----
src/Makevars.in | 1
src/R_vw.cpp | 22 ++--
src/accumulate.cc | 5 -
src/active_interactor.cc | 32 +++----
src/allreduce.cc | 84 ++++++++----------
src/bfgs.cc | 56 +++++++-----
src/cache.cc | 8 +
src/comp_io.h | 7 +
src/delay_ring.cc | 1
src/gd.cc | 27 +++---
src/gd.h | 3
src/gd_mf.cc | 20 ++--
src/global_data.cc | 24 +++--
src/io.h | 8 +
src/loss_functions.cc | 10 +-
src/message_relay.cc | 1
src/multisource.cc | 24 ++---
src/network.cc | 15 +--
src/noop.cc | 1
src/parse_args.cc | 106 +++++++++++------------
src/parse_example.cc | 23 +++--
src/parse_primitives.h | 10 +-
src/parse_regressor.cc | 44 ++++-----
src/parser.cc | 61 +++++--------
src/sender.cc | 5 -
src/simple_label.cc | 8 +
src/sparse_dense.cc | 1
src/unique_sort.cc | 1
src/vw.cc | 10 +-
35 files changed, 519 insertions(+), 456 deletions(-)
Path: /cran/updated | permanent link
Title: Fishery Stock Assessment by Catch Dynamic Models
Diff between CatDyn versions 1.0-3 dated 2011-07-25 and 1.0-4 dated 2012-05-20
More information about CatDyn at CRAN
Description: Using catch in biomass, fishing effort, and mean body mass
by time step, estimate stock abundance, natural mortality rate,
and fishing operational parameters. It includes methods for
plotting standard exploratory and analytical plots and to
pre-process data, five types of catch dynamics models of
increasing complexity, and two distributions for the catch
data.
Author: Ruben H. Roa Ureta
Maintainer: Ruben H. Roa Ureta
DESCRIPTION | 10
MD5 |only
R/BioFishpDay.Fk.R |only
R/CDMN0P.Lik.R | 47 +--
R/CDMN0P.Lik.gr.R | 131 +++++-----
R/CDMN0P.R | 3
R/CDMN1P.Lik.R | 59 ++--
R/CDMN1P.Lik.gr.R | 179 ++++++--------
R/CDMN1P.R | 1
R/CDMN2P.Lik.R | 69 ++---
R/CDMN2P.Lik.gr.R | 231 +++++++++---------
R/CDMN2P.R | 1
R/CDMN3P.Lik.R | 77 ++----
R/CDMN3P.Lik.gr.R | 299 +++++++++++-------------
R/CDMN3P.R | 1
R/CDMN4P.Lik.R | 85 +++---
R/CDMN4P.Lik.gr.R | 347 +++++++++++++--------------
R/CDMN4P.R | 1
R/CatDynData.R | 1
R/CatDynMod.R | 1
R/MBWpDaypSam.Fk.R |only
R/catdyn.R | 522 +++++++++++++++++++++---------------------
R/plot.CatDynData.R | 35 +-
R/plot.CatDynMod.R | 1
data/BioData.rda |only
data/CatEffData.rda |only
data/SeasonData.1990.S1.B.rda |binary
data/SeasonDates.rda |only
man/BioData.Rd |only
man/BioFishpDay.Fk.Rd |only
man/CDMN0P.Lik.Rd | 6
man/CDMN0P.Lik.gr.Rd | 8
man/CDMN0P.Rd | 22 -
man/CDMN1P.Lik.Rd | 6
man/CDMN1P.Lik.gr.Rd | 11
man/CDMN1P.Rd | 20 -
man/CDMN2P.Lik.Rd | 8
man/CDMN2P.Lik.gr.Rd | 11
man/CDMN2P.Rd | 20 -
man/CDMN3P.Lik.Rd | 6
man/CDMN3P.Lik.gr.Rd | 11
man/CDMN3P.Rd | 20 -
man/CDMN4P.Lik.Rd | 6
man/CDMN4P.Lik.gr.Rd | 9
man/CDMN4P.Rd | 20 -
man/CatDyn-package.Rd | 33 +-
man/CatEffData.Rd |only
man/MBWpDaypSam.Fk.Rd |only
man/SeasonData.1990.S1.B.Rd | 2
man/SeasonDates.Rd |only
man/catdyn.Rd | 233 +++++++-----------
man/plot.CatDynData.Rd | 5
man/plot.CatDynMod.Rd | 12
53 files changed, 1230 insertions(+), 1340 deletions(-)
Path: /cran/updated | permanent link
Title: Utility functions to execute standard ETL operations (using
package ff) on large data.
Diff between ETLUtils versions 1.0 dated 2012-03-27 and 1.1 dated 2012-05-20
More information about ETLUtils at CRAN
Description: Provides functions to facilitate the use of the ff package
in interaction with bigdata in SQL databases (e.g. in
Oracle/MySQL/PostgreSQL) by allowing easy importing directly
into ffdf objects using DBI and RODBC. Also contains some
basic utility functions to do fast left outer join merging
based on match and basic recoding.
Author: Jan Wijffels
Maintainer: Jan Wijffels
ETLUtils-1.0/ETLUtils/R/ETLUtils-package.R |only
ETLUtils-1.0/ETLUtils/R/ffutils.R |only
ETLUtils-1.1/ETLUtils/DESCRIPTION | 33 ++--
ETLUtils-1.1/ETLUtils/MD5 | 29 ++--
ETLUtils-1.1/ETLUtils/NAMESPACE | 5
ETLUtils-1.1/ETLUtils/NEWS | 3
ETLUtils-1.1/ETLUtils/R/ffsql.R |only
ETLUtils-1.1/ETLUtils/R/matchmerge.R | 4
ETLUtils-1.1/ETLUtils/R/pkg.R |only
ETLUtils-1.1/ETLUtils/R/utils.R | 14 +-
ETLUtils-1.1/ETLUtils/inst/smalldb.sqlite3 |binary
ETLUtils-1.1/ETLUtils/man/ETLUtils-package.Rd | 30 ++--
ETLUtils-1.1/ETLUtils/man/matchmerge.Rd | 160 ++++++++++++++++--------
ETLUtils-1.1/ETLUtils/man/naLOCFPlusone.Rd | 35 +++--
ETLUtils-1.1/ETLUtils/man/read.dbi.ffdf.Rd | 172 +++++++++++++++++---------
ETLUtils-1.1/ETLUtils/man/read.odbc.ffdf.Rd |only
ETLUtils-1.1/ETLUtils/man/recoder.Rd | 38 ++++-
ETLUtils-1.1/ETLUtils/man/renameColumns.Rd | 42 ++++--
18 files changed, 371 insertions(+), 194 deletions(-)
Path: /cran/updated | permanent link
Title: Tools for saving, restoring and teleporting R sessions.
Diff between sessionTools versions 0.9-1 dated 2012-03-05 and 0.9-2 dated 2012-05-20
More information about sessionTools at CRAN
Description: This package builds on the save.session function by making
installed packages, options and search paths savable and
restorable.
Author: Matthew D. Furia
Maintainer: Matthew D. Furia
DESCRIPTION | 12 +--
MD5 | 23 ++++--
NAMESPACE | 1
R/restoreClassDefinitions.R |only
R/restoreGenerics.R |only
R/restoreObjects.R | 27 ++++++-
R/restoreS4Methods.R |only
R/restoreSession.R | 15 +++-
R/saveSession.R | 27 ++++++-
inst/tests/test_restoreClassDefinitions.R |only
inst/tests/test_restoreGenerics.R |only
inst/tests/test_restoreObjects.R | 90 +++++++++++++++++++++++-
inst/tests/test_restoreS4Methods.R |only
inst/tests/test_saveSession.R | 112 ++++++++++++++++++++++++++++++
man/restoreClassDefinitions.Rd |only
man/restoreGenerics.Rd |only
man/restoreS4Methods.Rd |only
17 files changed, 282 insertions(+), 25 deletions(-)
Path: /cran/updated | permanent link
Title: Tools for analysing OmniLog(R) Phenotype Microarray data
Diff between opm versions 0.4-0 dated 2012-04-21 and 0.5-0 dated 2012-05-20
More information about opm at CRAN
Description: Tools for analysing OmniLog(R) Phenotype Microarray (PM)
data as produced by the device distributed by BiOLOG Inc.,
including plotting, aggregating (estimating curve parameters),
comparing and discretizing PM data, creating phylogenetic
formats and reports for taxonomic journals, integrating
metadata, using the YAML format for the storage of data and
metadata, and batch conversion of large numbers of files.
Author: Markus Goeker, with contributions by Lea A.I. Vaas, Johannes
Sikorski, Nora Buddruhs and Anne Fiebig
Maintainer: Markus Goeker
opm-0.4-0/opm/man/normalize_plate_name.Rd |only
opm-0.5-0/opm/DESCRIPTION | 10
opm-0.5-0/opm/MD5 | 157 ++++++-----
opm-0.5-0/opm/NAMESPACE | 4
opm-0.5-0/opm/NEWS | 52 +++
opm-0.5-0/opm/R/constants.R | 1
opm-0.5-0/opm/R/helpers.R | 401 ++++++++++++++++++++----------
opm-0.5-0/opm/R/io.R | 51 +--
opm-0.5-0/opm/R/list.R | 254 ++++++++-----------
opm-0.5-0/opm/R/matrix.R | 26 -
opm-0.5-0/opm/R/numeric.R | 99 ++++---
opm-0.5-0/opm/R/opm.R | 146 ++++++++--
opm-0.5-0/opm/R/opma.R | 46 ++-
opm-0.5-0/opm/R/opms.R | 261 ++++++++++++-------
opm-0.5-0/opm/R/opmx.R | 2
opm-0.5-0/opm/R/phylo.R | 55 +---
opm-0.5-0/opm/R/wmd.R | 149 ++++++++---
opm-0.5-0/opm/inst/scripts/run_opm.R | 54 +++-
opm-0.5-0/opm/man/MOA.Rd | 8
opm-0.5-0/opm/man/OPM.Rd | 14 -
opm-0.5-0/opm/man/OPMA.Rd | 8
opm-0.5-0/opm/man/OPMS.Rd | 30 +-
opm-0.5-0/opm/man/OPMX.Rd | 8
opm-0.5-0/opm/man/WMD.Rd | 22 +
opm-0.5-0/opm/man/YAML_VIA_LIST.Rd | 8
opm-0.5-0/opm/man/aggr_settings.Rd | 6
opm-0.5-0/opm/man/aggregated.Rd | 6
opm-0.5-0/opm/man/anyDuplicated.Rd | 25 -
opm-0.5-0/opm/man/bracket.Rd | 35 +-
opm-0.5-0/opm/man/case.Rd |only
opm-0.5-0/opm/man/collect_template.Rd | 6
opm-0.5-0/opm/man/contains.Rd | 29 +-
opm-0.5-0/opm/man/csv_data.Rd | 6
opm-0.5-0/opm/man/dim.Rd | 6
opm-0.5-0/opm/man/do_aggr.Rd | 32 ++
opm-0.5-0/opm/man/duplicated.Rd | 31 +-
opm-0.5-0/opm/man/extract_columns.Rd | 6
opm-0.5-0/opm/man/filename.Rd | 6
opm-0.5-0/opm/man/find_positions.Rd | 17 -
opm-0.5-0/opm/man/find_substrate.Rd | 15 -
opm-0.5-0/opm/man/glob_to_regex.Rd | 13
opm-0.5-0/opm/man/group_by_sep.Rd | 6
opm-0.5-0/opm/man/has_aggr.Rd | 6
opm-0.5-0/opm/man/hours.Rd | 6
opm-0.5-0/opm/man/include_metadata.Rd | 6
opm-0.5-0/opm/man/infix.k.Rd | 14 -
opm-0.5-0/opm/man/infix.largek.Rd | 14 -
opm-0.5-0/opm/man/infix.largeq.Rd | 33 +-
opm-0.5-0/opm/man/infix.q.Rd | 18 +
opm-0.5-0/opm/man/insert.Rd | 3
opm-0.5-0/opm/man/is_constant.Rd | 2
opm-0.5-0/opm/man/is_uniform.Rd | 2
opm-0.5-0/opm/man/length.Rd | 6
opm-0.5-0/opm/man/map_metadata.Rd | 26 +
opm-0.5-0/opm/man/map_names.Rd | 24 -
opm-0.5-0/opm/man/map_values.Rd | 87 ++++--
opm-0.5-0/opm/man/max.Rd | 6
opm-0.5-0/opm/man/measurements.Rd | 6
opm-0.5-0/opm/man/metadata.Rd | 16 -
opm-0.5-0/opm/man/metadata.set.Rd | 109 ++++++--
opm-0.5-0/opm/man/metadata_chars.Rd | 5
opm-0.5-0/opm/man/minmax.Rd | 6
opm-0.5-0/opm/man/parse_formula_head.Rd |only
opm-0.5-0/opm/man/plate_type.Rd | 64 +++-
opm-0.5-0/opm/man/plates.Rd | 35 ++
opm-0.5-0/opm/man/position.Rd | 6
opm-0.5-0/opm/man/prepare_k.Rd |only
opm-0.5-0/opm/man/repair_na_strings.Rd | 3
opm-0.5-0/opm/man/run_kmeans.Rd | 13
opm-0.5-0/opm/man/run_native_kmeans.Rd |only
opm-0.5-0/opm/man/select.Rd | 6
opm-0.5-0/opm/man/separate.Rd | 30 +-
opm-0.5-0/opm/man/seq.Rd | 6
opm-0.5-0/opm/man/setup_time.Rd | 6
opm-0.5-0/opm/man/show.Rd |only
opm-0.5-0/opm/man/summary.Rd | 10
opm-0.5-0/opm/man/taste.Rd |only
opm-0.5-0/opm/man/thin_out.Rd | 6
opm-0.5-0/opm/man/tidy.Rd | 18 -
opm-0.5-0/opm/man/to_metadata.Rd | 5
opm-0.5-0/opm/man/well.Rd | 6
opm-0.5-0/opm/man/well_to_substrate.Rd | 12
opm-0.5-0/opm/man/wells.Rd | 6
83 files changed, 1791 insertions(+), 947 deletions(-)
Path: /cran/updated | permanent link
Title: R Commander Plug-in for the survival Package
Diff between RcmdrPlugin.survival versions 1.0-0 dated 2011-01-03 and 1.0-1 dated 2012-05-19
More information about RcmdrPlugin.survival at CRAN
Description: This package provides an R Commander plug-in for the
survival package, with dialogs for Cox models, parametric
survival regression models, estimation of survival curves, and
testing for differences in survival curves, along with
data-management facilities and a variety of tests, diagnostics
and graphs.
Author: John Fox
Maintainer: John Fox
DESCRIPTION | 12 -
MD5 |only
NAMESPACE |only
R/CoxModel.R | 231 +++++++++++++++++++----
R/Survdiff.R | 167 ++++++++++++----
R/Survfit.R | 345 ++++++++++++++++++++++++++++-------
R/plot.coxph.R | 285 ++++++++++++++++++++++++----
R/startup.R | 36 ++-
R/survregModel.R | 274 +++++++++++++++++++++++----
data/Dialysis.rda |binary
data/Rossi.rda |binary
inst/CHANGES | 10 +
inst/etc/menus.txt | 4
man/RcmdrPlugin.survival-internal.Rd | 2
man/RcmdrPlugin.survival-package.Rd | 4
po/R-RcmdrPlugin.survival.pot | 15 +
16 files changed, 1140 insertions(+), 245 deletions(-)
Path: /cran/updated | permanent link
Title: Stable isotope analysis
Diff between IsotopeR versions 0.4.1 dated 2012-02-19 and 0.4.2 dated 2012-05-19
More information about IsotopeR at CRAN
Description: Estimates diet contributions from isotopic sources using
JAGS. Includes estimation of concentration dependence and
measurement error.
Author: Jake Ferguson and Jack Hopkins
Maintainer: Jake Ferguson
IsotopeR-0.4.1/IsotopeR/inst/doc/IsotopeR.log.u1conflict |only
IsotopeR-0.4.1/IsotopeR/inst/doc/IsotopeR.tex.backup |only
IsotopeR-0.4.2/IsotopeR/DESCRIPTION | 6 ++--
IsotopeR-0.4.2/IsotopeR/MD5 | 10 ++-----
IsotopeR-0.4.2/IsotopeR/NEWS | 3 ++
IsotopeR-0.4.2/IsotopeR/R/IsotopeRgui.R | 21 +++++++++++++--
IsotopeR-0.4.2/IsotopeR/inst/doc/IsotopeR.pdf |binary
7 files changed, 29 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
Title: Seismic Time Series Analysis Tools
Diff between RSEIS versions 3.0-1 dated 2012-03-09 and 3.0-6 dated 2012-05-19
More information about RSEIS at CRAN
Description: Multiple interactive codes to view and analyze seismic
data, via spectrum analysis, wavelet transforms, particle
motion, hodograms. Includes general time-series tools,
plotting, filtering, interactive display.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 8 -
MD5 | 84 ++++++++-------
NEWS | 4
R/DECIMATE.SEISN.R |only
R/DISPLACE.SEISN.R | 4
R/EPOCHyear.R | 9 +
R/ETECTG.R | 2
R/FILT.SEISN.R | 5
R/GAZI.R | 8 +
R/JGET.seis.R | 11 +-
R/JSAC.seis.R | 3
R/JSEGY.seis.R | 33 +++++-
R/Mine.seis.R | 5
R/PLOT.MATN.R | 4
R/PMOT.drive.R | 268 +++++++++++++++++++++++++++++++++++++++-----------
R/PreSet.Instr.R | 19 +++
R/SENSORsensitivity.R | 13 +-
R/VELOCITY.SEISN.R | 4
R/filedatetime.R | 8 -
R/getseis24.R | 2
R/many.time1D.R | 9 +
R/markseis24.R | 31 +++--
R/plotDB.R | 2
R/plotseis24.R | 30 +++--
R/recdate.R | 2
R/rseis2sac.R |only
R/selWPX.R | 47 +++++---
R/swig.R | 6 -
R/travel.time1D.R | 9 +
R/write1sac.R |only
inst/doc/hodo.pdf |binary
inst/doc/rseis.pdf |binary
man/DECIMATE.SEISN.Rd |only
man/DISPLACE.SEISN.Rd | 5
man/JGET.seis.Rd | 6 -
man/JSAC.seis.Rd | 8 -
man/Mine.seis.Rd | 6 -
man/RSEIS-package.Rd | 4
man/VELOCITY.SEISN.Rd | 4
man/filedatetime.Rd | 8 +
man/markseis24.Rd | 9 +
man/plotseis24.Rd | 25 +++-
man/rseis2sac.Rd |only
man/selAPX.Rd | 4
man/swig.Rd | 5
man/write1sac.Rd |only
46 files changed, 523 insertions(+), 191 deletions(-)
Path: /cran/updated | permanent link
Title: Seismic Hypocenter Determination
Diff between Rquake versions 1.3-2 dated 2012-02-01 and 1.6-3 dated 2012-05-19
More information about Rquake at CRAN
Description: Rquake is a package for analaysis of seismic data
collected continuously, or in trigger mode. The functions
organize other functions from RSEIS and GEOmap to help
researchers pick, locate, and store hypocenters for detailed
seismic investigation.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 6 ++--
MD5 | 68 ++++++++++++++++++++++++++++++++++++--------------
R/CONTPF.R | 4 +-
R/DistWeight.R |only
R/DoRLocate.R |only
R/DoUWLocate.R |only
R/EQXYresid.R | 50 ++++++++++++------------------------
R/GETpsTT.R |only
R/Gfirstguess.R | 2 -
R/INITpickfile.R | 2 -
R/Klocate.R | 17 ++++++------
R/LeftjustTime.R |only
R/OnePerSta.R | 2 -
R/PCsaveWPX.R | 49 +++++++++++++++++++++++++-----------
R/Qrangedatetime.R |only
R/RQ.R | 8 ++---
R/Rowz2Keep.R |only
R/SaveCSV.R | 45 ++++++++++++++++++++++-----------
R/SavePF.R | 31 +++++++++++++---------
R/Vlocate.R |only
R/XYerror.bars.R |only
R/XYlocate.R |only
R/chak.R | 4 +-
R/clusterWPX.R | 4 --
R/contPFarrivals.R | 2 -
R/editPIX.R |only
R/eqlipse.R |only
R/eqwrapup.R |only
R/gMAP.R | 2 -
R/getGAP.R |only
R/getresidTT.R |only
R/lastPIX.R |only
R/legitWPX.R |only
R/viewCHAC.R | 53 +++++++++++++++++++-------------------
R/viewseis.R | 2 -
man/DistWeight.Rd |only
man/DoRLocate.Rd |only
man/GETpsTT.Rd |only
man/LeftjustTime.Rd |only
man/Qrangedatetime.Rd |only
man/Rowz2Keep.Rd |only
man/Rquake-package.Rd | 2 -
man/Vlocate.Rd |only
man/XYerror.bars.Rd |only
man/XYlocate.Rd |only
man/eqlipse.Rd |only
man/eqwrapup.Rd |only
man/getGAP.Rd |only
man/getresidTT.Rd |only
man/lastPIX.Rd |only
man/legitWPX.Rd |only
51 files changed, 205 insertions(+), 148 deletions(-)
Path: /cran/updated | permanent link
Title: Various plotting functions
Diff between plotrix versions 3.4 dated 2012-04-01 and 3.4-1 dated 2012-05-19
More information about plotrix at CRAN
Description: Lots of plots, various labeling, axis and color scaling
functions.
Author: Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry
Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi,
Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl
Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa
Biancotto, Ofir Levy, Christophe Dutang, Peter Solymos, Robby
Engelmann, Michael Hecker, Felix Steinbeck, Hans Borchers,
Henrik Singmann
Maintainer: Jim Lemon
DESCRIPTION | 11 +++---
INDEX | 3 +
MD5 | 43 ++++++++++++++-----------
NAMESPACE | 3 +
NEWS | 7 ++++
R/add.ps.R |only
R/barNest.R | 5 +-
R/feather.plot.R | 2 +
R/kiteChart.R | 61 ++++++++++++++++++++++++++++-------
R/pie3D.R | 78 +++++++++++++++++++++++++---------------------
R/pyramid.plot.R | 2 -
R/radial.plot.R | 2 -
R/raw.means.plot.R |only
R/rm.plot2.R |only
R/sizetree.R | 16 ++++-----
data/soils.rda |binary
man/add.ps.Rd |only
man/barNest.Rd | 5 ++
man/dendroPlot.Rd | 3 +
man/draw.tilted.sector.Rd | 2 -
man/feather.plot.Rd | 11 ++++--
man/kiteChart.Rd | 24 +++++++++++---
man/pie3D.Rd | 23 ++++++++-----
man/pie3D.labels.Rd | 5 +-
man/raw.means.plot.Rd |only
25 files changed, 202 insertions(+), 104 deletions(-)
Path: /cran/updated | permanent link
Title: doBy - Groupwise summary statistics, general linear contrasts,
population means (least-squares-means), and other utilities
Diff between doBy versions 4.5.2 dated 2012-02-16 and 4.5-3 dated 2012-05-19
More information about doBy at CRAN
Description: doBy contains a variety of utilities including: 1)
Facilities for groupwise computations of summary statistics and
other facilities for working with grouped data. 2) General
linear contrasts and LSMEANS (least-squares-means also known as
population means), 3) Rscript2HTML for autmatic generation of
HTML file from R-script with a minimum of markup, 4) other
utilities. doBy originally contained facilities for 'doing
something to data where data would be partitioned by some
variables which define groupings of data' - hence the name
doBy.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
doBy-4.5-3/doBy/ChangeLog | 7
doBy-4.5-3/doBy/DESCRIPTION | 6
doBy-4.5-3/doBy/MD5 | 41 +-
doBy-4.5-3/doBy/R/Rmarkup.R | 239 ++++++++++------
doBy-4.5-3/doBy/data/codstom.rda |binary
doBy-4.5-3/doBy/data/dietox.rda |binary
doBy-4.5-3/doBy/data/milkman.RData |binary
doBy-4.5-3/doBy/doBy-Ex.R | 3
doBy-4.5-3/doBy/inst/Rmarkup |only
doBy-4.5-3/doBy/inst/doc/doBy.pdf |binary
doBy-4.5-3/doBy/inst/doc/popMeans.pdf |binary
doBy-4.5-3/doBy/man/Rmarkup.Rd | 12
doBy-4.5-3/doBy/vignettes/figures/doBy-042.pdf |binary
doBy-4.5-3/doBy/vignettes/figures/doBy-043.pdf |binary
doBy-4.5-3/doBy/vignettes/figures/doBy-044.pdf |binary
doBy-4.5-3/doBy/vignettes/figures/doBy-046.pdf |binary
doBy-4.5-3/doBy/vignettes/figures/doBy-048.pdf |binary
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Title: Binomial linear and linear-expit regression
Diff between blm versions 2011.2.0 dated 2011-11-23 and 2012.2.1 dated 2012-05-19
More information about blm at CRAN
Description: Implements regression models for binary data on the
absolute risk scale. These models are applicable to cohort and
populaiton-based case-control data.
Author: S. Kovalchik
Maintainer: S.Kovalchik
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blm-2012.2.1/blm/man/show.Rd | 12
blm-2012.2.1/blm/man/summary.Rd | 56
blm-2012.2.1/blm/man/vcov.Rd | 7
blm-2012.2.1/blm/man/which.constrained.Rd | 43
77 files changed, 1443 insertions(+), 2912 deletions(-)
Path: /cran/updated | permanent link
Title: Ordinal classification tree functions
Diff between rpartOrdinal versions 2.0.3 dated 2011-10-14 and 2.0.4 dated 2012-05-18
More information about rpartOrdinal at CRAN
Description: This package contains functions that can be called in
conjunction with rpart for deriving a classification tree when
the response to be predicted is ordinal.
Author: Kellie J. Archer
Maintainer: Kellie J. Archer
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rpartOrdinal-2.0.4/rpartOrdinal/inst/doc/rpartOrdinal.Rnw | 20
rpartOrdinal-2.0.4/rpartOrdinal/inst/doc/rpartOrdinal.pdf |binary
11 files changed, 474 insertions(+), 568 deletions(-)
Path: /cran/updated | permanent link
Title: Meta-Analysis with R
Diff between meta versions 2.0-4 dated 2012-05-03 and 2.1-0 dated 2012-05-18
More information about meta at CRAN
Description: Fixed and random effects meta-analysis. Functions for
tests of bias, forest and funnel plot.
Author: Guido Schwarzer
Maintainer: Guido Schwarzer
DESCRIPTION | 8 ++++----
MD5 | 28 ++++++++++++++--------------
NEWS | 34 ++++++++++++++++++++++++++++++++++
R/catmeth.R | 8 ++++++--
R/funnel.meta.R | 9 ++++++++-
R/meta-internal.R | 4 ++--
R/metabias.meta.R | 6 ++++++
R/metacum.R | 2 ++
R/metainf.R | 2 ++
R/print.meta.R | 3 ++-
R/print.summary.meta.R | 3 ++-
R/trimfill.default.R | 25 ++++++++++++-------------
R/trimfill.meta.R | 24 ++++++++++++++++++++----
man/funnel.meta.Rd | 3 ++-
man/trimfill.meta.Rd | 22 +++++++++++++++++-----
15 files changed, 133 insertions(+), 48 deletions(-)
Path: /cran/updated | permanent link
Title: Metabolomic Univariate and Multivariate Analysis
Diff between muma versions 1.0 dated 2012-04-24 and 1.1 dated 2012-05-18
More information about muma at CRAN
Description: Preprocessing of metabolomic data (normalization and
scalings); Principal Component Analysis with help tool for
choosing best-separating principal components and automatic
outlier testing; automatic univariate analysis for parametric
and non-parametric data, with report generation (volcano and
box plots); partial least sqaure discriminant analysis
(PLS-DA); orthogonal partial least square discriminant analysis
(OPLS-DA); Statistical Total Correlation Spectroscopy (STOCSY);
Ratio Analysis NMR SpectroscopY (RANSY).
Author: Edoardo Gaude, Francesca Chignola, Dimitrios Spiliotopoulos,
Silvia Mari, Andrea Spitaleri and Michela Ghitti
Maintainer: Edoardo gaude
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muma-1.1/muma/MD5 | 64 ++++----
muma-1.1/muma/R/Plot.pca.score.R | 2
muma-1.1/muma/R/Plot.plsda.R | 2
muma-1.1/muma/R/box.plot.R | 19 +-
muma-1.1/muma/R/chose.driver.R | 6
muma-1.1/muma/R/col.pvalues.R | 21 --
muma-1.1/muma/R/explore.data.R | 130 +++++++++++++----
muma-1.1/muma/R/oplsda.R | 7
muma-1.1/muma/R/ostocsy.R | 2
muma-1.1/muma/R/outlier.R | 4
muma-1.1/muma/R/plsda.R | 4
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muma-1.1/muma/R/stocsy.R | 4
muma-1.1/muma/R/univariate.R | 94 +++++++++++-
muma-1.1/muma/R/volcano.R | 33 +---
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muma-1.1/muma/man/pvalues.Rd | 30 ---
muma-1.1/muma/man/shapiro.Rd | 30 ---
muma-1.1/muma/man/univariate.Rd | 183 +++++++++++++++++------
muma-1.1/muma/man/volcano.Rd | 46 ++----
muma-1.1/muma/man/welch.Rd | 32 +---
muma-1.1/muma/man/wmw.Rd | 32 +---
38 files changed, 709 insertions(+), 495 deletions(-)
Path: /cran/updated | permanent link
Title: Fractional Factorial designs with 2-level factors
Diff between FrF2 versions 1.4 dated 2012-03-17 and 1.4-1 dated 2012-05-18
More information about FrF2 at CRAN
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is still under development. While much of the intended
functionality is already available, some changes and
improvements are still to be expected. Suggestions are welcome.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
DESCRIPTION | 17 ++++++++---------
MD5 | 4 ++--
inst/NEWS | 3 +++
3 files changed, 13 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
Title: Penalized likelihood factor analysis via non-concave penalty
Diff between fanc versions 0.17 dated 2012-05-17 and 0.18 dated 2012-05-18
More information about fanc at CRAN
Description: This package computes the penalized maximum likelihood
estimates of factor loadings and unique variances for various
tuning parameters. The pathwise coordinate descent along with
EM algorithm is used.
Author: Kei Hirose, Michio Yamamoto
Maintainer: Kei Hirose
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/print.fanc.R | 27 +++++++++++++++++++--------
man/fanc.Rd | 4 ++--
4 files changed, 28 insertions(+), 17 deletions(-)
Path: /cran/updated | permanent link
Title: Rcmdr Plug-In for Kaplan-Meier Plot and Other Plots by Using the
ggplot2 Package
Diff between RcmdrPlugin.KMggplot2 versions 0.0-4 dated 2012-03-01 and 0.1-0 dated 2012-05-18
More information about RcmdrPlugin.KMggplot2 at CRAN
Description: This package is an R Commander plug-in for Kaplan-Meier
plot and other plots by using the ggplot2 package.
Author: Triad sou. and Kengo NAGASHIMA
Maintainer: Triad sou.
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RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-discretebar-windowDiscretebar.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-discretebar.Rd |only
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RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-dist-windowDistBinom.Rd |only
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RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-dist-windowDistExp.Rd |only
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RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-dist-windowDistGamma.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-dist-windowDistGeom.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-dist-windowDistHyper.Rd |only
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RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-dist-windowDistNbinom.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-dist-windowDistNorm.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-dist-windowDistPois.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-dist-windowDistT.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-dist-windowDistUnif.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-dist-windowDistWeibull.Rd |only
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RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-factorize-windowFactorize.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-factorize.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-hist-windowHist.Rd |only
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RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-km-windowKM.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-km.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-line-windowLine.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-line.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-pie-windowPie.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-pie.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-checkError.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-checkTheme.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-checkVariable.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getCoord.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getFacet.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getGeom.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getGgplot.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getHelp.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getMain.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getMessage.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getOpts.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getParms.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getPlot.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getScale.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getTheme.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getWindowTitle.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getXlab.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getYlab.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-getZlab.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-plotWindow.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-registRmlist.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-removeRmlist.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-savePlot.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-setBack.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-setDataframe.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base-setFront.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-plot_base.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-qq-windowQQ.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-qq.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-scatter-windowScatter.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-scatter.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-scattermat-windowScattermat.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/plot-scattermat.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/theme-bw.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/theme-gray.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/theme-simple.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/theme-theme_rect2.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/util-gettextKmg2.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/util-ggsaveKmg2.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/util-nonFactors.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/util-nonFactorsP.Rd |only
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/po/R-RcmdrPlugin.KMggplot2-ja.po | 854 ++++------
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/po/R-RcmdrPlugin.KMggplot2.pot | 767 ++++----
180 files changed, 1079 insertions(+), 935 deletions(-)
Path: /cran/updated | permanent link
Title: Distance-based statistics (dbstats)
Diff between dbstats versions 1.0.1 dated 2011-06-30 and 1.0.2 dated 2012-05-18
More information about dbstats at CRAN
Description: This package contains functions for distance-based
prediction methods. These are methods for prediction where
predictor information is coded as a matrix of distances between
individuals. Distances can either be directly input as an
interdistances matrix, a squared interdistances matrix, an
inner-products matrix or computed from observed explanatory
variables.
Author: Boj, Eva
Maintainer: Fortiana, Josep
DESCRIPTION | 11 +-
MD5 |only
NAMESPACE | 30 ++++++-
R/Gcalc.r | 3
R/controls_ldblm.r | 20 -----
R/dbglm.r | 152 +++++++++++++++++++-------------------
R/dblm.r | 100 ++++++++++++-------------
R/dbplsr.r | 98 ++++++++++++------------
R/ldbglm.r | 174 +++++++++++++++++++++++---------------------
R/ldblm.r | 170 +++++++++++++++++++++---------------------
R/plot.dblm.r | 2
R/pred.train.sample.dbglm.r | 2
R/pred.train.sample.r | 2
R/predict.dbplsr.r | 2
R/predict.ldbglm.r | 2
R/predict.ldblm.r | 2
R/print.summary.dblm.r | 16 ++++
R/print.summary.dbplsr.r | 23 +++++
R/print.summary.ldblm.r | 17 ++++
R/summary.dblm.r | 16 +++-
R/summary.dbplsr.r | 17 ++++
R/summary.ldblm.r | 28 ++++++-
man/dbglm.Rd | 16 +---
man/dblm.Rd | 14 +--
man/dbplsr.Rd | 13 +--
man/dbstats-package.Rd | 6 -
man/ldbglm.Rd | 23 ++---
man/ldblm.Rd | 29 +++----
man/plot.dbplsr.rd | 4 -
man/plot.ldblm.rd | 5 -
man/predict.dbglm.rd | 2
man/predict.dblm.rd | 4 -
man/predict.dbplsr.rd | 2
man/predict.ldbglm.rd | 8 +-
man/predict.ldblm.rd | 6 -
man/summary.dbglm.rd | 7 +
man/summary.dblm.rd | 17 ++++
man/summary.dbplsr.rd | 8 +-
man/summary.ldblm.rd | 9 ++
39 files changed, 596 insertions(+), 464 deletions(-)
Path: /cran/updated | permanent link
Title: Multitaper Spectral Analysis
Diff between multitaper versions 1.0-0 dated 2012-04-24 and 1.0-1 dated 2012-05-18
More information about multitaper at CRAN
Description: Generates Discrete Prolate Spheroidal Sequences, provides
functions and utilities for multitaper spectral analysis and
related problems.
Author: Karim Rahim
Maintainer: Karim Rahim
multitaper-1.0-0/multitaper/data/.RData |only
multitaper-1.0-0/multitaper/data/.Rhistory |only
multitaper-1.0-1/multitaper/DESCRIPTION | 10 +++++-----
multitaper-1.0-1/multitaper/MD5 | 6 +++---
multitaper-1.0-1/multitaper/R/multitaper.R | 8 ++++++--
multitaper-1.0-1/multitaper/R/plots.R | 2 +-
6 files changed, 15 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
Title: Facilitates automated HTML report creation
Diff between HTMLUtils versions 0.1.4 dated 2010-08-10 and 0.1.5 dated 2012-05-18
More information about HTMLUtils at CRAN
Description: Facilitates automated HTML report creation, in particular
framed HTML pages and dynamically sortable tables.
Author: "Markus Loecher, Berlin School of Economics and Law (BSEL)"
Maintainer: "Markus Loecher, Berlin School of Economics and Law (BSEL)"
HTMLUtils-0.1.4/HTMLUtils/R/CairoWorks.R |only
HTMLUtils-0.1.4/HTMLUtils/R/CleanUpdevs.R |only
HTMLUtils-0.1.4/HTMLUtils/man/CairoWorks.Rd |only
HTMLUtils-0.1.4/HTMLUtils/man/CleanUpdevs.Rd |only
HTMLUtils-0.1.5/HTMLUtils/DESCRIPTION | 16 -
HTMLUtils-0.1.5/HTMLUtils/MD5 |only
HTMLUtils-0.1.5/HTMLUtils/NAMESPACE |only
HTMLUtils-0.1.5/HTMLUtils/R/BasicHTML.R | 240 +++++++++++-------
HTMLUtils-0.1.5/HTMLUtils/R/FramedHTML.R | 277 +++++++++++++-------
HTMLUtils-0.1.5/HTMLUtils/R/HTMLhref.R | 13
HTMLUtils-0.1.5/HTMLUtils/R/HTMLsortedTable.R | 126 +++++----
HTMLUtils-0.1.5/HTMLUtils/R/InstallJSC.R | 36 +-
HTMLUtils-0.1.5/HTMLUtils/R/MyReportBegin.R | 22 -
HTMLUtils-0.1.5/HTMLUtils/R/MyReportEnd.R | 14 -
HTMLUtils-0.1.5/HTMLUtils/R/makePathName.R | 39 +-
HTMLUtils-0.1.5/HTMLUtils/R/myHTMLInitFile.R | 278 +++++++++++----------
HTMLUtils-0.1.5/HTMLUtils/man/BasicHTML.Rd | 156 +++++------
HTMLUtils-0.1.5/HTMLUtils/man/FramedHTML.Rd | 186 +++++++-------
HTMLUtils-0.1.5/HTMLUtils/man/HTMLUtils-package.Rd | 54 +---
HTMLUtils-0.1.5/HTMLUtils/man/HTMLhref.Rd | 44 +--
HTMLUtils-0.1.5/HTMLUtils/man/HTMLsortedTable.Rd | 52 +--
HTMLUtils-0.1.5/HTMLUtils/man/InstallJSC.Rd | 38 +-
HTMLUtils-0.1.5/HTMLUtils/man/MyReportBegin.Rd | 43 +--
HTMLUtils-0.1.5/HTMLUtils/man/MyReportEnd.Rd | 38 +-
HTMLUtils-0.1.5/HTMLUtils/man/makePathName.Rd | 42 +--
HTMLUtils-0.1.5/HTMLUtils/man/myHTMLInitFile.Rd | 79 +++--
26 files changed, 977 insertions(+), 816 deletions(-)
Path: /cran/updated | permanent link
Title: CoreArray Genomic Data Structure (GDS) R Interface
Diff between gdsfmt versions 0.9.8 dated 2012-04-16 and 0.9.9 dated 2012-05-18
More information about gdsfmt at CRAN
Description: CoreArray project is to develop portable and scalable
storage technologies for bioinformatics data, allowing parallel
computing at the multicore and cluster levels.
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
DESCRIPTION | 16 -
MD5 | 27 -
R/GDS.all.r | 710 +++++++++++++++++++++++++++++++++++++++++++--
man/add.gdsn.Rd | 19 +
man/apply.gdsn.Rd | 19 -
man/applylt.gdsn.Rd |only
man/clusterApply.gdsn.Rd |only
man/clusterApplylt.gdsn.Rd |only
man/gdsfmt-package.Rd | 4
man/objdesp.gdsn.Rd | 8
src/dBase.cpp | 8
src/dBase.h | 8
src/dPlatform.cpp | 3
src/dSeq.h | 2
src/dType.h | 6
src/gdsfmt.cpp | 90 ++---
16 files changed, 809 insertions(+), 111 deletions(-)
Path: /cran/updated | permanent link
Title: Regularized sparse inverse covariance matrix estimation
Diff between QUIC versions 1.0 dated 2012-05-16 and 1.1 dated 2012-05-17
More information about QUIC at CRAN
Description: Use Newton's method and coordinate descent to solve the
regularized inverse covariance matrix estimation problem.
Please refer to: Sparse Inverse Covariance Matrix Estimation
Using Quadratic Approximation, Cho-Jui Hsieh, Matyas A. Sustik,
Inderjit S. Dhillon, Pradeep Ravikumar, Advances in Neural
Information Processing Systems 24, 2011, p. 2330--2338.
Author: Cho-Jui Hsieh [aut], Matyas A. Sustik [aut, cre], Inderjit S.
Dhillon [aut], Pradeep Ravikumar [aut]
Maintainer: Matyas A. Sustik
DESCRIPTION | 6 +++---
MD5 | 6 +++---
src/Makevars | 4 ++--
src/QUIC.cpp | 6 +++---
4 files changed, 11 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
Title: Boosted One-Step Statistics: Fast and accurate approximations
for GLM, GEE and Mixed models for use in GWAS
Diff between boss versions 1.0 dated 2012-04-03 and 1.1 dated 2012-05-17
More information about boss at CRAN
Description: BOSS uses parameter estimates obtained without genotype to
boost standard one-step approximations, and precomputes as much
as possible without genotype (using boss.set) to minimize
effort required.
Author: Arend Voorman
Maintainer: Arend Voorman
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
R/boss.R | 6 +++---
man/boss-package.Rd | 11 +++++++++++
man/boss.fit.Rd | 5 ++++-
man/boss.ncdf.Rd | 6 ++++++
man/boss.set.Rd | 8 +++++---
7 files changed, 39 insertions(+), 17 deletions(-)
Path: /cran/updated | permanent link
Title: Conduct univariate and bivariate wavelet analyses
Diff between biwavelet versions 0.1 dated 2012-04-28 and 0.11 dated 2012-05-17
More information about biwavelet at CRAN
Description: This is a port of the WTC MATLAB package written by Aslak
Grinsted and the wavelet program written by Christopher
Torrence and Gibert P. Compo. This package can be used to
perform univariate and bivariate (cross-wavelet, wavelet
coherence, wavelet clustering) analyses.
Author: Tarik C. Gouhier, Aslak Grinsted
Maintainer: Tarik C. Gouhier
DESCRIPTION | 13 +++++++------
MD5 | 30 +++++++++++++++++-------------
NAMESPACE | 24 +++++++++++++++++++-----
R/plot.biwavelet.R | 7 +++----
R/wclust.R |only
R/wdist.R |only
R/wt.R | 1 -
man/biwavelet-package.Rd | 34 ++++++++++++++++++++++++++++++++--
man/enviro.data.Rd | 6 +++---
man/plot.biwavelet.Rd | 15 ++++++---------
man/wclust.Rd |only
man/wdist.Rd |only
man/wt.Rd | 6 +++---
man/wt.bases.Rd | 4 ++--
man/wt.sig.Rd | 6 +++---
man/wtc.Rd | 6 +++---
man/wtc.sig.Rd | 10 +++++-----
man/xwt.Rd | 4 ++--
18 files changed, 105 insertions(+), 61 deletions(-)
Path: /cran/updated | permanent link
Title: Robust Trimmed Clustering
Diff between tclust versions 1.1 dated 2011-05-04 and 1.1-02 dated 2012-05-17
More information about tclust at CRAN
Description: Robust Trimmed Clustering
Author: Agustin Mayo Iscar, Luis Angel Garcia Escudero, Heinrich Fritz
Maintainer: Heinrich Fritz
tclust-1.1-02/tclust/DESCRIPTION | 6
tclust-1.1-02/tclust/MD5 |only
tclust-1.1-02/tclust/NAMESPACE | 1
tclust-1.1-02/tclust/R/R_tclust.R | 2
tclust-1.1-02/tclust/R/ctlcurves.R | 2
tclust-1.1-02/tclust/R/discr_coords.R | 10
tclust-1.1-02/tclust/R/plot.DiscrFact.R | 4
tclust-1.1-02/tclust/R/plot.tclust.R | 49 -
tclust-1.1-02/tclust/R/plot_DiscrFact_p2.R |only
tclust-1.1-02/tclust/R/plot_DiscrFact_p3.R |only
tclust-1.1-02/tclust/R/tclust.R | 348 ++++++---
tclust-1.1-02/tclust/R/tkmeans.C.R |only
tclust-1.1-02/tclust/R/tkmeans.R | 4
tclust-1.1-02/tclust/inst/CITATION |only
tclust-1.1-02/tclust/inst/doc/tclust.bib |only
tclust-1.1-02/tclust/inst/doc/tclust.pdf |binary
tclust-1.1-02/tclust/inst/doc/tclust.rnw | 843 ++++++++++++-----------
tclust-1.1-02/tclust/man/plot.DiscrFact.Rd | 12
tclust-1.1-02/tclust/man/plot.tclust.Rd | 14
tclust-1.1-02/tclust/man/tclust.Rd | 26
tclust-1.1-02/tclust/man/tclust.package.Rd | 4
tclust-1.1-02/tclust/man/tkmeans.Rd |only
tclust-1.1-02/tclust/src/ML_package.cpp |only
tclust-1.1-02/tclust/src/ML_package.h |only
tclust-1.1-02/tclust/src/Makevars | 4
tclust-1.1-02/tclust/src/R_meal.cpp |only
tclust-1.1-02/tclust/src/R_meal.h |only
tclust-1.1-02/tclust/src/R_meal_BLAS.cpp |only
tclust-1.1-02/tclust/src/R_package.cpp |only
tclust-1.1-02/tclust/src/R_package.h |only
tclust-1.1-02/tclust/src/clust.cpp |only
tclust-1.1-02/tclust/src/clust.h |only
tclust-1.1-02/tclust/src/restr.cpp | 5
tclust-1.1-02/tclust/src/smat.base.h | 122 +++
tclust-1.1-02/tclust/src/smat.cpp | 35
tclust-1.1-02/tclust/src/smat.def.h | 2
tclust-1.1-02/tclust/src/smat.elop.h | 163 ++++
tclust-1.1-02/tclust/src/smat.h | 1
tclust-1.1-02/tclust/src/smat.matop.h | 21
tclust-1.1-02/tclust/src/smat.meal.h | 57 +
tclust-1.1-02/tclust/src/smat_meal_passrng.h |only
tclust-1.1-02/tclust/src/smat_meal_passrng_hpp.h |only
tclust-1.1-02/tclust/src/tclust.cpp | 58 -
tclust-1.1-02/tclust/src/tclust.h | 24
tclust-1.1-02/tclust/src/tkmeans.cpp |only
tclust-1.1-02/tclust/src/tkmeans.h |only
tclust-1.1/tclust/R/plot.DiscrFact.p2.R |only
tclust-1.1/tclust/R/plot.DiscrFact.p3.R |only
tclust-1.1/tclust/inst/doc/natbib.bst |only
tclust-1.1/tclust/inst/doc/natbib.sty |only
tclust-1.1/tclust/inst/doc/refs3.bib |only
tclust-1.1/tclust/src/R.meal.cpp |only
tclust-1.1/tclust/src/R.meal.h |only
tclust-1.1/tclust/src/package.cpp |only
tclust-1.1/tclust/src/package.h |only
55 files changed, 1187 insertions(+), 630 deletions(-)
Path: /cran/updated | permanent link
Title: Estimation, simulation and visualization of Hierarchical
Archimedean Copulae (HAC)
Diff between HAC versions 0.2-1 dated 2012-05-04 and 0.2-2 dated 2012-05-17
More information about HAC at CRAN
Description: Package provides the estimation of the structure and the
parameters, simulation methods and structural plots of
high-dimensional Hierarchical Archimedean Copulae (HAC).
Author: Ostap Okhrin
Maintainer: Alexander Ristig
ChangeLog.txt | 8 +++++
DESCRIPTION | 8 ++---
MD5 | 26 +++++++++----------
NAMESPACE | 3 --
R/copula_cdf.r | 6 ++--
R/copula_constructor.r | 4 +-
R/copula_estimate.r | 66 ++++++++++++++++++++-----------------------------
R/copula_functions.r | 11 +++-----
R/copula_pdf.r | 7 ++---
R/copula_simulate.r | 9 +-----
man/Definitions.Rd | 2 -
man/dHAC.Rd | 2 -
man/phi.Rd | 4 +-
man/theta2tau.Rd | 4 +-
14 files changed, 73 insertions(+), 87 deletions(-)
Path: /cran/updated | permanent link
Title: FastICA Algorithms to perform ICA and Projection Pursuit
Diff between fastICA versions 1.1-14 dated 2012-03-04 and 1.1-15 dated 2012-05-17
More information about fastICA at CRAN
Description: Implementation of FastICA algorithm to perform Independent
Component Analysis (ICA) and Projection Pursuit.
Author: J L Marchini
Maintainer: Brian Ripley
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/fastICA.R | 15 +++++++--------
3 files changed, 13 insertions(+), 14 deletions(-)
Path: /cran/updated | permanent link
Title: Ridge regression and other kernels for genomic selection
Diff between rrBLUP versions 3.7 dated 2012-04-10 and 3.8 dated 2012-05-17
More information about rrBLUP at CRAN
Description: One application is to estimate marker effects by ridge
regression; alternatively, BLUPs can be calculated based on
kinship. The genetic covariance between lines can be modeled
using a marker-based, additive relationship matrix, or via
Gaussian and exponential kernels.
Author: Jeffrey Endelman
Maintainer: Jeffrey Endelman
DESCRIPTION | 6 +++---
MD5 | 6 +++---
NEWS | 4 ++++
R/A.mat.R | 2 +-
4 files changed, 11 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: Organic Mass Spectrometry
Diff between OrgMassSpecR versions 0.3-5 dated 2011-08-26 and 0.3-12 dated 2012-05-17
More information about OrgMassSpecR at CRAN
Description: Organic/biological mass spectrometry data analysis.
Author: Nathan G. Dodder, with code contributions from Katharine M.
Mullen.
Maintainer: Nathan Dodder
OrgMassSpecR-0.3-12/OrgMassSpecR/DESCRIPTION | 16 ++---
OrgMassSpecR-0.3-12/OrgMassSpecR/LICENSE | 3
OrgMassSpecR-0.3-12/OrgMassSpecR/MD5 | 31 +++++-----
OrgMassSpecR-0.3-12/OrgMassSpecR/NAMESPACE | 6 +
OrgMassSpecR-0.3-12/OrgMassSpecR/R/ConvertConcentration.R |only
OrgMassSpecR-0.3-12/OrgMassSpecR/R/WriteMspFile.R |only
OrgMassSpecR-0.3-12/OrgMassSpecR/data/example.chromatogram.multiple.txt.gz |only
OrgMassSpecR-0.3-12/OrgMassSpecR/data/example.chromatogram.single.txt.gz |only
OrgMassSpecR-0.3-12/OrgMassSpecR/data/example.sequence.rda |binary
OrgMassSpecR-0.3-12/OrgMassSpecR/data/example.spectrum.authentic.txt.gz |only
OrgMassSpecR-0.3-12/OrgMassSpecR/data/example.spectrum.labeled.txt.gz |only
OrgMassSpecR-0.3-12/OrgMassSpecR/data/example.spectrum.unknown.txt.gz |only
OrgMassSpecR-0.3-12/OrgMassSpecR/inst/NEWS.Rd | 31 ++++++++++
OrgMassSpecR-0.3-12/OrgMassSpecR/inst/doc/OrgMassSpecR-examples.pdf |binary
OrgMassSpecR-0.3-12/OrgMassSpecR/man/ConvertConcentration.Rd |only
OrgMassSpecR-0.3-12/OrgMassSpecR/man/MonoisotopicMass.Rd | 18 +++++
OrgMassSpecR-0.3-12/OrgMassSpecR/man/ReadMspDirectory.Rd | 6 +
OrgMassSpecR-0.3-12/OrgMassSpecR/man/WriteMspFile.Rd |only
OrgMassSpecR-0.3-12/OrgMassSpecR/vignettes |only
OrgMassSpecR-0.3-5/OrgMassSpecR/data/example.chromatogram.multiple.txt.xz |only
OrgMassSpecR-0.3-5/OrgMassSpecR/data/example.chromatogram.single.txt.xz |only
OrgMassSpecR-0.3-5/OrgMassSpecR/data/example.spectrum.authentic.txt.xz |only
OrgMassSpecR-0.3-5/OrgMassSpecR/data/example.spectrum.labeled.txt.xz |only
OrgMassSpecR-0.3-5/OrgMassSpecR/data/example.spectrum.unknown.txt.xz |only
24 files changed, 82 insertions(+), 29 deletions(-)
Path: /cran/updated | permanent link
Title: Degrees of freedom of elastic net, adaptive lasso and
generalized elastic net
Diff between msgps versions 1.1 dated 2011-12-06 and 1.3 dated 2012-05-17
More information about msgps at CRAN
Description: This package computes the degrees of freedom of the lasso,
elastic net, generalized elastic net and adaptive lasso based
on the generalized path seeking algorithm. The optimal model
can be selected by model selection criteria including Mallows'
Cp, bias-corrected AIC (AICc), generalized cross validation
(GCV) and BIC.
Author: Kei Hirose
Maintainer: Kei Hirose
DESCRIPTION | 15 ++++++++++-----
MD5 | 18 +++++++++---------
R/coef.dfgps.R | 1 +
R/coef.step.dfgps.R | 1 +
R/cp.dfgps.R | 1 +
R/dfgps.R | 14 ++++++++------
man/msgps.Rd | 3 +--
man/plot.msgps.Rd | 3 +--
man/predict.msgps.Rd | 3 +--
man/summary.msgps.Rd | 3 +--
10 files changed, 34 insertions(+), 28 deletions(-)
Path: /cran/updated | permanent link
Title: Matrix eQTL: Ultra fast eQTL analysis via large matrix
operations
Diff between MatrixEQTL versions 1.5.2 dated 2012-02-15 and 1.6.0 dated 2012-05-17
More information about MatrixEQTL at CRAN
Description: Matrix eQTL is designed for fast eQTL analysis on large
datasets. Matrix eQTL can test for association between
genotype and gene expression using linear regression with
either additive or ANOVA genotype effects. The models can
include covariates to account for factors as population
stratification, gender, and clinical variables. It also
supports models with heteroscedastic and/or correlated errors,
false discovery rate estimation and separate treatment of local
(cis) and distant (trans) eQTLs.
Author: Andrey Shabalin
Maintainer: Andrey Shabalin
MatrixEQTL-1.5.2/MatrixEQTL/man/MatrixeQTL-package.Rd |only
MatrixEQTL-1.6.0/MatrixEQTL/DESCRIPTION | 8
MatrixEQTL-1.6.0/MatrixEQTL/MD5 | 21
MatrixEQTL-1.6.0/MatrixEQTL/NAMESPACE | 6
MatrixEQTL-1.6.0/MatrixEQTL/R/Matrix_eQTL_engine.R | 878 +++++++++++-------
MatrixEQTL-1.6.0/MatrixEQTL/man/MatrixEQTL-package.Rd |only
MatrixEQTL-1.6.0/MatrixEQTL/man/Matrix_eQTL_main.Rd | 129 +-
MatrixEQTL-1.6.0/MatrixEQTL/man/SlicedData-class.Rd | 71 +
MatrixEQTL-1.6.0/MatrixEQTL/man/figures |only
MatrixEQTL-1.6.0/MatrixEQTL/man/modelANOVA.Rd | 33
MatrixEQTL-1.6.0/MatrixEQTL/man/modelLINEAR.Rd | 33
MatrixEQTL-1.6.0/MatrixEQTL/man/modelLINEAR_CROSS.Rd | 35
MatrixEQTL-1.6.0/MatrixEQTL/man/plot.MatrixEQTL.Rd |only
13 files changed, 764 insertions(+), 450 deletions(-)
Path: /cran/updated | permanent link
Title: Visualizing Hypothesis Tests in Multivariate Linear Models
Diff between heplots versions 0.9-11 dated 2012-02-12 and 0.9-12 dated 2012-05-17
More information about heplots at CRAN
Description: Provides HE plot functions for visualizing hypothesis
tests in multivariate linear models. They represents
sums-of-squares-and-products matrices for linear hypotheses and
for error using ellipses (in two dimensions) and ellipsoids (in
three dimensions).
Author: John Fox, Michael Friendly, and Georges Monette
Maintainer: Michael Friendly
heplots-0.9-11/heplots/inst/doc/fig/plastic1-HE3D.jpg |only
heplots-0.9-12/heplots/.Rinstignore | 3
heplots-0.9-12/heplots/DESCRIPTION | 13 -
heplots-0.9-12/heplots/MD5 | 98 +++++-----
heplots-0.9-12/heplots/NEWS | 13 +
heplots-0.9-12/heplots/R/heplot.R | 4
heplots-0.9-12/heplots/R/heplot1d.R | 3
heplots-0.9-12/heplots/R/heplot3d.R | 4
heplots-0.9-12/heplots/data/Skulls.RData |only
heplots-0.9-12/heplots/inst/doc/HE-examples.Rnw | 2
heplots-0.9-12/heplots/inst/doc/HE-examples.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-Ortho-fm1.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-Ortho-fm3.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-hern-can-age.pdf |only
heplots-0.9-12/heplots/inst/doc/fig/plot-hern-can-build.pdf |only
heplots-0.9-12/heplots/inst/doc/fig/plot-hern-can-cardiac.pdf |only
heplots-0.9-12/heplots/inst/doc/fig/plot-hern-can-pstat.pdf |only
heplots-0.9-12/heplots/inst/doc/fig/plot-hern-pairs.pdf |only
heplots-0.9-12/heplots/inst/doc/fig/plot-jury-can1.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-jury-mod1-HE.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-jury-mod1-pairs.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-jury-mod2-HE.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-jury-mod3-eff.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-obk-HE1.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-obk-HE2.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-obk-HE3.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-obk2-HE1.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-obk2-HE2.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-ortho-HE.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-ortho-nonlin-HE.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-ortho-xyplot1.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-ortho-xyplot2.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-plastic1.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-plastic2.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-rohwer-HE1.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-rohwer-HE2.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-rohwer-HE3.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-rohwer-HE4.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-voc1.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-voc4.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-voc8.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-wl-HE1.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-wl-HE2.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-wl-HE3.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/plot-wl-means.pdf |binary
heplots-0.9-12/heplots/inst/doc/fig/rohwer-HE3D.pdf |binary
heplots-0.9-12/heplots/inst/doc/repeated.pdf |binary
heplots-0.9-12/heplots/inst/doc/rohwer-HE3D.png |only
heplots-0.9-12/heplots/inst/doc/skulls.jpg |only
heplots-0.9-12/heplots/man/Hernior.Rd | 29 ++
heplots-0.9-12/heplots/man/Skulls.Rd |only
heplots-0.9-12/heplots/man/SocGrades.Rd | 18 +
heplots-0.9-12/heplots/man/heplot-package.Rd | 10 -
heplots-0.9-12/heplots/man/heplot.Rd | 16 +
heplots-0.9-12/heplots/man/heplot1d.Rd | 18 +
heplots-0.9-12/heplots/man/heplot3d.Rd | 18 +
56 files changed, 164 insertions(+), 85 deletions(-)
Path: /cran/updated | permanent link
Title: R MPFR - Multiple Precision Floating-Point Reliable
Diff between Rmpfr versions 0.4-6 dated 2012-02-06 and 0.4-7 dated 2012-05-16
More information about Rmpfr at CRAN
Description: Rmpfr provides S4 classes and methods for arithmetic
including transcendental ("special") functions for arbitrary
precision floating point numbers. To this end, it interfaces to
the LGPL'ed MPFR (Multiple Precision Floating-Point Reliable)
Library which itself is based on the GMP (GNU Multiple
Precision) Library.
Author: Martin Maechler
Maintainer: Martin Maechler
ChangeLog | 17 +++++
DESCRIPTION | 14 ++--
MD5 | 119 ++++++++++++++++++++++++++++++--------
NAMESPACE | 19 +++---
R/AllClasses.R | 14 +++-
R/Arith.R | 10 +++
R/Math.R | 12 +++
R/array.R | 28 ++++----
R/as.R | 16 +++--
R/gmp-convert.R | 23 ++++++-
R/mpfr.R | 16 ++---
R/special-fun.R | 4 -
TODO | 10 ++-
inst/doc/2012-Rmpfr-ZurichR |only
inst/doc/Rmpfr-pkg.Rnw | 49 ++++++++++++---
inst/doc/Rmpfr-pkg.pdf |binary
inst/doc/_region_.tex |only
inst/doc/log1mexp-note.Rnw |only
inst/doc/log1mexp-note.pdf |only
inst/doc/log1mexp-note_nb-mm3.pdf |only
inst/doc/log1mexp.bib |only
man/chooseMpfr.Rd | 11 +++
man/factorialMpfr.Rd | 11 +++
man/formatMpfr.Rd | 14 +++-
man/gmp-conversions.Rd | 39 ++++++++----
man/is.whole.Rd | 21 ++++--
man/mpfr-class.Rd | 8 +-
man/sumBinomMpfr.Rd | 7 +-
outdated-man+vign.mail |only
src/utils.c | 60 +++++++------------
tests/bit-repr.Rout.save | 6 -
tests/special-fun-ex.R | 14 ++--
32 files changed, 382 insertions(+), 160 deletions(-)
Path: /cran/updated | permanent link
Title: Reading M3 files
Diff between M3 versions 0.2 dated 2012-01-12 and 0.3 dated 2012-05-16
More information about M3 at CRAN
Description: This package contains functions to read in and manipulate
air quality model output from Models3-formatted files. This
format is used by the Community Multiscale Air Quaility (CMAQ)
model.
Author: Jenise Swall
Maintainer: Jenise Swall
M3-0.2/M3/R/get.canmex.bds.R |only
M3-0.2/M3/man/get.canmex.bds.Rd |only
M3-0.3/M3/DESCRIPTION | 10 ++++----
M3-0.3/M3/MD5 | 18 +++++++-------
M3-0.3/M3/NAMESPACE | 3 +-
M3-0.3/M3/R/get.canusamex.bds.R |only
M3-0.3/M3/R/get.datetime.seq.R | 2 -
M3-0.3/M3/R/get.map.lines.M3.proj.R | 19 ++++++++++++---
M3-0.3/M3/man/get.canusamex.bds.Rd |only
M3-0.3/M3/man/get.map.lines.M3.proj.Rd | 41 +++++++++++++++------------------
M3-0.3/M3/man/project.M3.1.to.M3.2.Rd | 2 -
M3-0.3/M3/man/project.lonlat.to.M3.Rd | 2 -
12 files changed, 53 insertions(+), 44 deletions(-)
Path: /cran/updated | permanent link
Title: Sampling Surface Simulation for Areal Sampling Methods
Diff between sampSurf versions 0.6-2 dated 2012-04-04 and 0.6-4 dated 2012-05-16
More information about sampSurf at CRAN
Description: This package provides the base classes and routines for
sampling surface simulation useful in the comparison of
different areal sampling methods in forestry, ecology and
natural resources.
Author: Jeffrey H. Gove
Maintainer: Jeffrey H. Gove
DESCRIPTION | 10 +--
MD5 | 38 +++++------
R/izContainerConstructors.R | 96 +++++++++++++++++++++++++++++
R/sampSurfConstructors.R | 2
inst/doc/ArealSamplingClass.pdf |binary
inst/doc/GettingStarted.pdf |binary
inst/doc/InclusionZoneClass.pdf |binary
inst/doc/InclusionZoneGridClass.pdf |binary
inst/doc/Overview.pdf |binary
inst/doc/StemClass.pdf |binary
inst/doc/TractClass.pdf |binary
inst/doc/monte.pdf |binary
inst/doc/sampSurfClass.pdf |binary
inst/doc/sampSurfExtensions.pdf |binary
man/InclusionZone-class.Rd | 32 ++++++---
man/downLogIZs-class.Rd | 6 -
man/downLogIZs-methods.Rd | 39 ++++++++++-
man/sampSurf-package.Rd | 118 ++++++++++++++++++------------------
man/standingTreeIZs-class.Rd | 6 -
man/standingTreeIZs-methods.Rd | 39 ++++++++++-
20 files changed, 279 insertions(+), 107 deletions(-)
Path: /cran/updated | permanent link
Title: Exact Calculation of WMTR
Diff between WMTregions versions 3.2.4 dated 2012-02-02 and 3.2.5 dated 2012-05-16
More information about WMTregions at CRAN
Description: R realization of an exact algorithm for calculating the
weighted-mean trimmed regions
Author: Pavel Bazovkin
Maintainer: Pavel Bazovkin
DESCRIPTION | 6 +++---
MD5 | 7 ++++---
inst |only
man/WMTR.Rd | 3 ++-
man/WMTregions-package.Rd | 2 +-
5 files changed, 10 insertions(+), 8 deletions(-)
Path: /cran/updated | permanent link
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Diff between spatstat versions 1.26-1 dated 2012-04-19 and 1.27-0 dated 2012-05-16
More information about spatstat at CRAN
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Also
supports three-dimensional point patterns, and space-time point
patterns in any number of dimensions. Contains over 1000
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, pixel images and
tessellations. Exploratory methods include K-functions,
nearest neighbour distance and empty space statistics, Fry
plots, pair correlation function, kernel smoothed intensity,
relative risk estimation with cross-validated bandwidth
selection, mark correlation functions, segregation indices,
mark dependence diagnostics etc. Point process models can be
fitted to point pattern data using functions ppm, kppm, slrm
similar to glm. Models may include dependence on covariates,
interpoint interaction, cluster formation and dependence on
marks. Fitted models can be simulated automatically. Also
provides facilities for formal inference (such as chi-squared
tests) and model diagnostics (including simulation envelopes,
residuals, residual plots and Q-Q plots).
Author: Adrian Baddeley
Maintainer: Adrian Baddeley
spatstat-1.26-1/spatstat/man/deprecated.Rd |only
spatstat-1.27-0/spatstat/DESCRIPTION | 29 -
spatstat-1.27-0/spatstat/MD5 | 222 +++++++-------
spatstat-1.27-0/spatstat/NEWS | 198 ++++++++++++
spatstat-1.27-0/spatstat/R/Gmulti.R | 11
spatstat-1.27-0/spatstat/R/Jmulti.R | 6
spatstat-1.27-0/spatstat/R/Kmulti.R | 15
spatstat-1.27-0/spatstat/R/Kmulti.inhom.R | 32 +-
spatstat-1.27-0/spatstat/R/affine.R | 160 +++++++++-
spatstat-1.27-0/spatstat/R/badgey.R | 9
spatstat-1.27-0/spatstat/R/clftest.R |only
spatstat-1.27-0/spatstat/R/defaultwin.R | 44 +-
spatstat-1.27-0/spatstat/R/envelope.R | 91 ++++-
spatstat-1.27-0/spatstat/R/eval.im.R | 24 +
spatstat-1.27-0/spatstat/R/fiksel.R | 4
spatstat-1.27-0/spatstat/R/is.subset.owin.R | 108 ++++---
spatstat-1.27-0/spatstat/R/linearK.R | 6
spatstat-1.27-0/spatstat/R/lineardisc.R | 11
spatstat-1.27-0/spatstat/R/listof.R | 7
spatstat-1.27-0/spatstat/R/lpp.R | 10
spatstat-1.27-0/spatstat/R/marks.R | 19 -
spatstat-1.27-0/spatstat/R/model.depends.R | 15
spatstat-1.27-0/spatstat/R/mpl.R | 18 -
spatstat-1.27-0/spatstat/R/multihard.R | 13
spatstat-1.27-0/spatstat/R/multistrauss.R | 11
spatstat-1.27-0/spatstat/R/multistrhard.R | 11
spatstat-1.27-0/spatstat/R/options.R | 8
spatstat-1.27-0/spatstat/R/ord.family.R | 4
spatstat-1.27-0/spatstat/R/pairsat.family.R | 4
spatstat-1.27-0/spatstat/R/pairwise.family.R | 4
spatstat-1.27-0/spatstat/R/plot.fv.R | 141 ++++++++-
spatstat-1.27-0/spatstat/R/ppm.R | 9
spatstat-1.27-0/spatstat/R/ppmclass.R | 36 +-
spatstat-1.27-0/spatstat/R/ppp.R | 10
spatstat-1.27-0/spatstat/R/ppx.R | 14
spatstat-1.27-0/spatstat/R/predict.ppm.R | 7
spatstat-1.27-0/spatstat/R/profilepl.R | 41 +-
spatstat-1.27-0/spatstat/R/qqplotppm.R | 2
spatstat-1.27-0/spatstat/R/rmh.default.R | 55 ++-
spatstat-1.27-0/spatstat/R/rmh.ppm.R | 54 ++-
spatstat-1.27-0/spatstat/R/rmhcontrol.R | 92 +-----
spatstat-1.27-0/spatstat/R/rmhexpand.R |only
spatstat-1.27-0/spatstat/R/rmhmodel.R | 22 +
spatstat-1.27-0/spatstat/R/rmhmodel.ppm.R | 51 +--
spatstat-1.27-0/spatstat/R/setcov.R | 69 +++-
spatstat-1.27-0/spatstat/R/strauss.R | 4
spatstat-1.27-0/spatstat/R/summary.ppm.R | 27 +
spatstat-1.27-0/spatstat/R/transect.R |only
spatstat-1.27-0/spatstat/R/triplets.R | 4
spatstat-1.27-0/spatstat/R/util.R | 61 +++
spatstat-1.27-0/spatstat/R/vcov.ppm.R | 306 ++++++++++++++++++--
spatstat-1.27-0/spatstat/R/window.R | 14
spatstat-1.27-0/spatstat/R/wingeom.R | 96 +++---
spatstat-1.27-0/spatstat/demo/spatstat.R | 24 +
spatstat-1.27-0/spatstat/inst/doc/getstart.pdf |binary
spatstat-1.27-0/spatstat/inst/doc/shapefiles.pdf |binary
spatstat-1.27-0/spatstat/man/Extract.lpp.Rd |only
spatstat-1.27-0/spatstat/man/Extract.ppx.Rd |only
spatstat-1.27-0/spatstat/man/Gcross.Rd | 21 -
spatstat-1.27-0/spatstat/man/Gdot.Rd | 22 -
spatstat-1.27-0/spatstat/man/Gmulti.Rd | 14
spatstat-1.27-0/spatstat/man/Jcross.Rd | 25 -
spatstat-1.27-0/spatstat/man/Jdot.Rd | 15
spatstat-1.27-0/spatstat/man/Jmulti.Rd | 14
spatstat-1.27-0/spatstat/man/Kcross.Rd | 24 -
spatstat-1.27-0/spatstat/man/Kcross.inhom.Rd | 23 -
spatstat-1.27-0/spatstat/man/Kdot.Rd | 13
spatstat-1.27-0/spatstat/man/Kdot.inhom.Rd | 18 -
spatstat-1.27-0/spatstat/man/Kmulti.Rd | 29 +
spatstat-1.27-0/spatstat/man/Kmulti.inhom.Rd |only
spatstat-1.27-0/spatstat/man/Lcross.Rd | 10
spatstat-1.27-0/spatstat/man/Lcross.inhom.Rd | 17 -
spatstat-1.27-0/spatstat/man/Ldot.Rd | 5
spatstat-1.27-0/spatstat/man/Ldot.inhom.Rd | 13
spatstat-1.27-0/spatstat/man/affine.Rd | 8
spatstat-1.27-0/spatstat/man/affine.im.Rd |only
spatstat-1.27-0/spatstat/man/affine.owin.Rd | 2
spatstat-1.27-0/spatstat/man/affine.ppp.Rd | 2
spatstat-1.27-0/spatstat/man/affine.psp.Rd | 1
spatstat-1.27-0/spatstat/man/as.owin.Rd | 10
spatstat-1.27-0/spatstat/man/clf.test.Rd |only
spatstat-1.27-0/spatstat/man/contour.listof.Rd | 8
spatstat-1.27-0/spatstat/man/convolve.im.Rd |only
spatstat-1.27-0/spatstat/man/default.expand.Rd | 25 -
spatstat-1.27-0/spatstat/man/default.rmhcontrol.Rd | 22 -
spatstat-1.27-0/spatstat/man/envelope.Rd | 15
spatstat-1.27-0/spatstat/man/envelope.envelope.Rd | 36 +-
spatstat-1.27-0/spatstat/man/eval.im.Rd | 14
spatstat-1.27-0/spatstat/man/expand.owin.Rd | 47 +--
spatstat-1.27-0/spatstat/man/flipxy.Rd | 1
spatstat-1.27-0/spatstat/man/imcov.Rd | 21 -
spatstat-1.27-0/spatstat/man/inside.owin.Rd | 2
spatstat-1.27-0/spatstat/man/is.rectangle.Rd |only
spatstat-1.27-0/spatstat/man/model.depends.Rd | 21 +
spatstat-1.27-0/spatstat/man/pcfcross.Rd | 10
spatstat-1.27-0/spatstat/man/pcfcross.inhom.Rd | 10
spatstat-1.27-0/spatstat/man/pcfdot.Rd | 5
spatstat-1.27-0/spatstat/man/pcfdot.inhom.Rd | 5
spatstat-1.27-0/spatstat/man/plot.fv.Rd | 13
spatstat-1.27-0/spatstat/man/predict.ppm.Rd | 41 +-
spatstat-1.27-0/spatstat/man/print.ppm.Rd | 21 -
spatstat-1.27-0/spatstat/man/qqplot.ppm.Rd | 2
spatstat-1.27-0/spatstat/man/reflect.Rd |only
spatstat-1.27-0/spatstat/man/rmh.default.Rd | 17 -
spatstat-1.27-0/spatstat/man/rmh.ppm.Rd | 44 +-
spatstat-1.27-0/spatstat/man/rmhcontrol.Rd | 89 +++--
spatstat-1.27-0/spatstat/man/rmhexpand.Rd |only
spatstat-1.27-0/spatstat/man/scalardilate.Rd |only
spatstat-1.27-0/spatstat/man/simulate.ppm.Rd | 10
spatstat-1.27-0/spatstat/man/spatstat-deprecated.Rd |only
spatstat-1.27-0/spatstat/man/spatstat-internal.Rd | 44 ++
spatstat-1.27-0/spatstat/man/spatstat-package.Rd | 14
spatstat-1.27-0/spatstat/man/spatstat.options.Rd | 10
spatstat-1.27-0/spatstat/man/summary.ppp.Rd | 13
spatstat-1.27-0/spatstat/man/transect.im.Rd |only
spatstat-1.27-0/spatstat/man/update.rmhcontrol.Rd |only
spatstat-1.27-0/spatstat/man/vcov.ppm.Rd | 10
spatstat-1.27-0/spatstat/man/will.expand.Rd |only
spatstat-1.27-0/spatstat/src/lineardisc.c | 107 +++++-
spatstat-1.27-0/spatstat/src/xyseg.c | 89 ++++-
spatstat-1.27-0/spatstat/tests/alltests.R | 9
121 files changed, 2384 insertions(+), 910 deletions(-)
Path: /cran/updated | permanent link
Title: Semiparametric Bivariate Probit Modelling
Diff between SemiParBIVProbit versions 3.2 dated 2012-05-08 and 3.2-1 dated 2012-05-16
More information about SemiParBIVProbit at CRAN
Description: Routine for fitting bivariate probit models with
semiparametric predictors (including linear, nonlinear and
nonparametric random effects) in the presence of correlated
error equations, endogeneity or sample selection.
Author: Giampiero Marra
Maintainer: Giampiero Marra
ChangeLog | 3 +++
DESCRIPTION | 6 +++---
MD5 | 18 +++++++++---------
R/LM.bpm.r | 13 ++++++++++++-
man/LM.bpm.Rd | 2 +-
man/SemiParBIVProbit-package.Rd | 2 ++
man/SemiParBIVProbit.Rd | 4 +++-
man/bprobNP.Rd | 7 +++++++
man/summary.SemiParBIVProbit.Rd | 5 +++--
man/working.compNP.Rd | 6 ++++++
10 files changed, 49 insertions(+), 17 deletions(-)
Path: /cran/updated | permanent link
Title: R Interface to the Protocol Buffers API
Diff between RProtoBuf versions 0.2.3 dated 2011-04-13 and 0.2.4 dated 2012-05-16
More information about RProtoBuf at CRAN
Description: Protocol Buffers are a way of encoding structured data in
an efficient yet extensible format. Google uses Protocol
Buffers for almost all of its internal RPC protocols and file
formats.
Author: Romain Francois
Maintainer: Romain and Dirk
.Rinstignore |only
ChangeLog | 52 ++++++++++++++++++++
DESCRIPTION | 10 +--
MD5 |only
R/internals.R | 36 ++++++-------
R/lookup.R | 16 +++---
R/read.R | 5 -
R/zzz.R | 20 +++----
cleanup | 1
configure.in | 2
inst/NEWS | 13 ++++-
inst/doc/RProtoBuf-quickref.pdf |binary
inst/doc/RProtoBuf-unitTests.pdf |binary
inst/doc/RProtoBuf.pdf |binary
inst/doc/unitTests-results/RProtoBuf-unitTests.html | 27 +++++-----
inst/doc/unitTests-results/RProtoBuf-unitTests.txt | 21 ++++----
inst/unitTests/runit.addressbook.R | 10 +++
inst/unitTests/runit.golden.message.R | 5 +
man/Descriptor-class.Rd | 4 -
man/EnumDescriptor-class.Rd | 4 -
man/FieldDescriptor-class.Rd | 3 -
man/Message-class.Rd | 4 -
man/P.Rd | 2
man/clone.Rd | 3 -
man/readASCII.Rd | 17 ++++++
man/readProtoFiles.Rd | 6 +-
src/mutators.cpp | 4 -
src/rprotobuf.h | 3 -
src/wrapper_Descriptor.cpp | 15 +++++
src/wrapper_FileDescriptor.cpp | 4 -
src/wrapper_Message.cpp | 2
31 files changed, 204 insertions(+), 85 deletions(-)
Path: /cran/updated | permanent link
Title: Relative survival
Diff between relsurv versions 2.0-1 dated 2012-03-21 and 2.0-2 dated 2012-05-16
More information about relsurv at CRAN
Description: Various functions for relative survival analysis.
Author: Maja Pohar Perme [aut, cre]
Maintainer: Maja Pohar Perme
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/Rcode.r | 10 +++++-----
3 files changed, 11 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
Title: Multiple Precision Arithmetic
Diff between gmp versions 0.5-1 dated 2012-01-21 and 0.5-2 dated 2012-05-16
More information about gmp at CRAN
Description: Multiple Precision Arithmetic (big integers and rationals,
prime number tests, matrix computation), "arithmetic without
limitations" using the C library GMP (GNU Multiple Precision
Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme
Maintainer: Antoine Lucas
ChangeLog | 23 +
DESCRIPTION | 13
MD5 | 66 ++-
NAMESPACE | 29 +
R/biginteger.R | 89 ++++-
R/bigq.R | 92 +++--
R/matrix-prods.R | 1
R/zzz.R | 2
TODO | 27 +
data/Oakley1.rda |binary
data/Oakley2.rda |binary
man/Oakley.Rd | 11
man/biginteger.Rd | 18 -
man/bigrational.Rd | 13
man/factorialZ.Rd | 14
man/formatN.Rd |only
man/frexpZ.Rd | 13
man/is.whole.Rd |only
man/isprime.Rd | 25 +
man/nextprime.Rd | 23 -
man/operators_bigq.Rd | 10
man/powm.Rd | 13
src/bigintegerR.cc | 101 +++---
src/bigintegerR.h | 2
src/bigmod.cc | 37 +-
src/bigmod.h | 16
src/bigrational.cc | 15
src/bigrational.h | 33 +
src/bigrationalR.cc | 148 ++++++++
src/bigrationalR.h | 56 ++-
src/factor.cc | 2
src/init.cc | 2
tests/arith-ex.R | 117 +++++--
tests/gmp-test.R | 100 ++++--
tests/gmp-test.Rout.save | 782 +++++++++++++++++++++++++++++++++--------------
35 files changed, 1357 insertions(+), 536 deletions(-)
Path: /cran/updated | permanent link
Title: Implementation of a generic adaptive Monte Carlo Markov Chain
sampler
Diff between adaptMCMC versions 1.0.2 dated 2012-01-03 and 1.0.3 dated 2012-05-16
More information about adaptMCMC at CRAN
Description: This package provides an implementation of the generic
adaptive Monte Carlo Markov chain sampler proposed by Vihola
(2011).
Author: Andreas Scheidegger,
Maintainer: Andreas Scheidegger
DESCRIPTION | 16 +++++----
MD5 | 10 +++---
R/Adaptive_MCMC.R | 73 +++++++++------------------------------------
man/MCMC.Rd | 22 +++++++------
man/MCMC.parallel.Rd | 15 +++------
man/genericMCMC-package.Rd | 3 +
6 files changed, 51 insertions(+), 88 deletions(-)
Path: /cran/updated | permanent link
Title: Species Distribution Modelling Tools: Tools for processing data
associated with species distribution modelling exercises
Diff between SDMTools versions 1.1-11 dated 2012-04-10 and 1.1-12 dated 2012-05-16
More information about SDMTools at CRAN
Description: This packages provides a set of tools for post processing
the outcomes of species distribution modeling exercises. It
includes novel methods for comparing models and tracking
changes in distributions through time. It further includes
methods for visualizing outcomes, selecting thresholds,
calculating measures of accuracy and landscape fragmentation
statistics, etc.. This package was made possible in part by
financial support from the Australian Research Council & ARC
Research Network for Earth System Science.
Author: Jeremy VanDerWal, Lorena Falconi, Stephanie Januchowski, Luke
Shoo and Collin Storlie
Maintainer: Jeremy VanDerWal
ChangeLog |only
DESCRIPTION | 11 ++++++-----
MD5 | 6 ++++--
R/ClassStat.R | 2 +-
R/zzz.R |only
5 files changed, 11 insertions(+), 8 deletions(-)
Path: /cran/updated | permanent link
Title: Regularized sparse inverse covariance matrix estimation
Diff between QUIC versions 2012.02 dated 2012-02-29 and 1.0 dated 2012-05-16
More information about QUIC at CRAN
Description: Use Newton's method and coordinate descent to solve the
regularized inverse covariance matrix estimation problem.
Please refer to: Sparse Inverse Covariance Matrix Estimation
Using Quadratic Approximation, Cho-Jui Hsieh, Matyas A. Sustik,
Inderjit S. Dhillon, Pradeep Ravikumar, Advances in Neural
Information Processing Systems 24, 2011, p. 2330--2338.
Author: Cho-Jui Hsieh [aut], Matyas A. Sustik [aut, cre], Inderjit S.
Dhillon [aut], Pradeep Ravikumar [aut]
Maintainer: Matyas A. Sustik
QUIC-1.0/QUIC/DESCRIPTION | 10 -
QUIC-1.0/QUIC/MD5 | 12 -
QUIC-1.0/QUIC/R/QUIC.R | 82 ++++++------
QUIC-1.0/QUIC/demo/00Index | 4
QUIC-1.0/QUIC/demo/ER.R |only
QUIC-1.0/QUIC/demo/ERpath.R |only
QUIC-1.0/QUIC/src/QUIC.cpp | 239 ++++++++++++++++++++++--------------
QUIC-2012.02/QUIC/demo/demoER.R |only
QUIC-2012.02/QUIC/demo/demoERpath.R |only
9 files changed, 207 insertions(+), 140 deletions(-)
Path: /cran/updated | permanent link
Title: Package to perform actuarial mathematics for life contingencies
insurances
Diff between lifecontingencies versions 0.9.2 dated 2012-04-09 and 0.9.3 dated 2012-05-16
More information about lifecontingencies at CRAN
Description: Financial and actuarial functions to evaluate life
contingencies.
Author: Giorgio A. Spedicato
Maintainer: Giorgio A. Spedicato
lifecontingencies-0.9.2/lifecontingencies/vignettes/lifecontingenciesVignettes.bbl |only
lifecontingencies-0.9.2/lifecontingencies/vignettes/lifecontingenciesVignettes.blg |only
lifecontingencies-0.9.2/lifecontingencies/vignettes/makeImages.R.tex |only
lifecontingencies-0.9.3/lifecontingencies/DESCRIPTION | 8
lifecontingencies-0.9.3/lifecontingencies/MD5 | 36
lifecontingencies-0.9.3/lifecontingencies/NEWS | 2
lifecontingencies-0.9.3/lifecontingencies/R/actuarialFunctions.R | 172
lifecontingencies-0.9.3/lifecontingencies/R/demographicFunctions.R | 2
lifecontingencies-0.9.3/lifecontingencies/R/randomGenerationFunctions.R | 118
lifecontingencies-0.9.3/lifecontingencies/data/demoFrance.rda |only
lifecontingencies-0.9.3/lifecontingencies/inst/doc/lifecontingenciesVignettes.Rnw | 2338 +++++-----
lifecontingencies-0.9.3/lifecontingencies/inst/doc/lifecontingenciesVignettes.pdf |binary
lifecontingencies-0.9.3/lifecontingencies/man/DAxn.Rd | 5
lifecontingencies-0.9.3/lifecontingencies/man/IAxn.Rd | 5
lifecontingencies-0.9.3/lifecontingencies/man/demoFrance.Rd |only
lifecontingencies-0.9.3/lifecontingencies/man/rLifeContingencies.Rd | 4
lifecontingencies-0.9.3/lifecontingencies/vignettes/images/fig2.png |binary
lifecontingencies-0.9.3/lifecontingencies/vignettes/images/fig4.png |binary
lifecontingencies-0.9.3/lifecontingencies/vignettes/lifecontingenciesVignettes.R | 414 -
lifecontingencies-0.9.3/lifecontingencies/vignettes/lifecontingenciesVignettes.Rnw | 2338 +++++-----
lifecontingencies-0.9.3/lifecontingencies/vignettes/lifecontingencies_jss.pdf |only
lifecontingencies-0.9.3/lifecontingencies/vignettes/vignetteBiblio.bib | 195
22 files changed, 2903 insertions(+), 2734 deletions(-)
Path: /cran/updated | permanent link
Title: Bayesian Inference for Marketing/Micro-econometrics
Diff between bayesm versions 2.2-4 dated 2011-02-27 and 2.2-5 dated 2012-05-16
More information about bayesm at CRAN
Description: bayesm covers many important models used in marketing and
micro-econometrics applications. The package includes: Bayes
Regression (univariate or multivariate dep var), Bayes
Seemingly Unrelated Regression (SUR), Binary and Ordinal
Probit, Multinomial Logit (MNL) and Multinomial Probit (MNP),
Multivariate Probit, Negative Binomial (Poisson) Regression,
Multivariate Mixtures of Normals (including clustering),
Dirichlet Process Prior Density Estimation with normal base,
Hierarchical Linear Models with normal prior and covariates,
Hierarchical Linear Models with a mixture of normals prior and
covariates, Hierarchical Multinomial Logits with a mixture of
normals prior and covariates, Hierarchical Multinomial Logits
with a Dirichlet Process prior and covariates, Hierarchical
Negative Binomial Regression Models, Bayesian analysis of
choice-based conjoint data, Bayesian treatment of linear
instrumental variables models, and Analysis of Multivariate
Ordinal survey data with scale usage heterogeneity (as in Rossi
et al, JASA (01)). For further reference, consult our book,
Bayesian Statistics and Marketing by Rossi, Allenby and
McCulloch.
Author: Peter Rossi
Maintainer: Peter Rossi
DESCRIPTION | 14 +++++++-------
MD5 |only
R/plot.bayesm.hcoef.R | 7 ++++---
R/plot.bayesm.nmix.R | 6 ++++--
R/rhierNegbinRw.R | 2 +-
R/rivDP.R | 3 ++-
R/rnegbinRw.R | 2 +-
R/summary.bayesm.mat.R | 2 +-
data/Scotch.rda |binary
data/bank.rda |binary
data/cheese.rda |binary
data/customerSat.rda |binary
data/datalist |only
data/detailing.rda |binary
data/margarine.rda |binary
data/orangeJuice.rda |binary
data/tuna.rda |binary
inst/doc/bayesm-manual.pdf |binary
man/condMom.Rd | 2 +-
man/createX.Rd | 4 +++-
man/eMixMargDen.Rd | 2 +-
man/plot.bayesm.hcoef.Rd | 3 ++-
man/rhierMnlRwMixture.Rd | 2 +-
man/summary.bayesm.mat.Rd | 3 +++
src/bayesmcpp.cpp | 3 ++-
25 files changed, 33 insertions(+), 22 deletions(-)
Path: /cran/updated | permanent link
Title: Robust Estimation for Compositional Data.
Diff between robCompositions versions 1.5.0 dated 2011-05-06 and 1.6.0 dated 2012-05-15
More information about robCompositions at CRAN
Description: The package includes methods for imputation of
compositional data including robust methods, methods to impute
rounded zeros, (robust) outlier detection for compositional
data, (robust) principal component analysis for compositional
data, (robust) factor analysis for compositional data, (robust)
discriminant analysis for compositional data (Fisher rule),
robust regression with compositional predictors and (robust)
Anderson-Darling normality tests for compositional data as well
as popular log-ratio transformations (alr, clr, ilr, and their
inverse transformations). In addition, visualisation and
diagnostic tools are implemented as well as high and low-level
plot functions for the ternary diagram.
Author: Matthias Templ, Karel Hron, Peter Filzmoser
Maintainer: Matthias Templ
robCompositions-1.5.0/robCompositions/R/drawMahal.R |only
robCompositions-1.5.0/robCompositions/inst/doc/.project |only
robCompositions-1.5.0/robCompositions/inst/doc/CoDaWork.sty |only
robCompositions-1.5.0/robCompositions/inst/doc/boxplot.pdf |only
robCompositions-1.5.0/robCompositions/inst/doc/ilr.pdf |only
robCompositions-1.5.0/robCompositions/inst/doc/logo.pdf |only
robCompositions-1.5.0/robCompositions/inst/doc/pca1.pdf |only
robCompositions-1.5.0/robCompositions/inst/doc/pcaOrig.pdf |only
robCompositions-1.5.0/robCompositions/inst/doc/plot-acomp.pdf |only
robCompositions-1.5.0/robCompositions/inst/doc/ref.bib |only
robCompositions-1.5.0/robCompositions/inst/doc/refPCS.bib |only
robCompositions-1.5.0/robCompositions/inst/doc/refPCSn.bib |only
robCompositions-1.5.0/robCompositions/inst/doc/ternary.pdf |only
robCompositions-1.6.0/robCompositions/DESCRIPTION | 27
robCompositions-1.6.0/robCompositions/MD5 |only
robCompositions-1.6.0/robCompositions/NAMESPACE | 6
robCompositions-1.6.0/robCompositions/R/adtest.R | 12
robCompositions-1.6.0/robCompositions/R/daFisher.R | 2
robCompositions-1.6.0/robCompositions/R/ilrregression.R |only
robCompositions-1.6.0/robCompositions/R/impCoda.R | 4
robCompositions-1.6.0/robCompositions/R/impCoda2.R |only
robCompositions-1.6.0/robCompositions/R/impRZilr.R | 1
robCompositions-1.6.0/robCompositions/R/lmCoDaX.R |only
robCompositions-1.6.0/robCompositions/R/pcaCoDa.R | 13
robCompositions-1.6.0/robCompositions/R/plot.pcaCoDa.R | 1
robCompositions-1.6.0/robCompositions/R/robGUI.R | 1288 ++++++++--
robCompositions-1.6.0/robCompositions/R/robVariation.R | 3
robCompositions-1.6.0/robCompositions/R/robilrregression.R |only
robCompositions-1.6.0/robCompositions/R/summary.imp.R | 4
robCompositions-1.6.0/robCompositions/R/ternaryDiag.R | 165 +
robCompositions-1.6.0/robCompositions/R/ternaryDiagAbline.R |only
robCompositions-1.6.0/robCompositions/R/ternaryDiagEllipse.R |only
robCompositions-1.6.0/robCompositions/R/ternaryDiagLines.R |only
robCompositions-1.6.0/robCompositions/R/ternaryDiagPoints.R |only
robCompositions-1.6.0/robCompositions/R/utils.R |only
robCompositions-1.6.0/robCompositions/R/zzz.R | 10
robCompositions-1.6.0/robCompositions/data/expenditures.rda |binary
robCompositions-1.6.0/robCompositions/inst/CITATION | 31
robCompositions-1.6.0/robCompositions/inst/doc/imputation.pdf |binary
robCompositions-1.6.0/robCompositions/inst/doc/robCompostions-overview.pdf |binary
robCompositions-1.6.0/robCompositions/man/expenditures.Rd | 2
robCompositions-1.6.0/robCompositions/man/lmCoDaX.Rd |only
robCompositions-1.6.0/robCompositions/man/ternaryDiag.Rd | 22
robCompositions-1.6.0/robCompositions/man/ternaryDiagAbline.Rd |only
robCompositions-1.6.0/robCompositions/man/ternaryDiagEllipse.Rd |only
robCompositions-1.6.0/robCompositions/man/ternaryDiagPoints.Rd |only
robCompositions-1.6.0/robCompositions/tests/rz.R | 9
robCompositions-1.6.0/robCompositions/vignettes |only
48 files changed, 1328 insertions(+), 272 deletions(-)
Path: /cran/updated | permanent link
Title: Mixed Effects Cox Models.
Diff between coxme versions 2.2-2 dated 2012-04-27 and 2.2-3 dated 2012-05-15
More information about coxme at CRAN
Description: Cox proportional hazards models containing Gaussian random
effects, also known as frailty models.
Author: Terry Therneau
Maintainer: Terry Therneau
DESCRIPTION | 14 +--
MD5 | 48 +++++++------
NAMESPACE | 1
R/anova.coxme.R |only
R/bdsmatrix.R |only
R/coxmeMlist.R | 2
R/lmekin.R | 150 +---------------------------------------
inst/NEWS.Rd | 20 +++++
inst/doc/coxme.Rnw | 1
inst/doc/coxme.pdf |binary
inst/doc/laplace.pdf |binary
inst/doc/lmekin.Rnw | 65 ++++++++++++-----
inst/doc/lmekin.pdf |binary
inst/doc/variance.Rnw | 2
inst/doc/variance.pdf |binary
man/anova.coxme.Rd |only
man/coxmeMlist.Rd | 2
noweb/Makefile | 17 ++++
noweb/all.nw | 177 +++++++++++++++++++++++++++++++++++-------------
noweb/bdsmatrix.Rnw | 131 ++++++++++++++++++++++++++---------
noweb/lmekin.Rnw | 41 +++++++----
noweb/varfun2.Rnw | 5 +
src/bds_dsc.c |only
tests/lmekin2.R |only
tests/lmekin2.Rout.save |only
vignettes/coxme.Rnw | 1
vignettes/lmekin.Rnw | 65 ++++++++++++-----
vignettes/variance.Rnw | 2
28 files changed, 436 insertions(+), 308 deletions(-)
Path: /cran/updated | permanent link
Title: Tests/Searches for significant clusters in genetic data.
Diff between bayesclust versions 3.0 dated 2010-03-13 and 3.1 dated 2012-05-15
More information about bayesclust at CRAN
Description: Bayes Clustering Package
Author: Gopal, V. and Fuentes, C. and Casella, G.
Maintainer: Gopal, V.
DESCRIPTION | 8 ++++----
MD5 |only
inst |only
man/bayesclust-package.Rd | 4 ++++
4 files changed, 8 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Title: TIMe Series Analysis and Control package
Diff between timsac versions 1.2.6 dated 2012-03-05 and 1.2.7 dated 2012-05-15
More information about timsac at CRAN
Description: Functions for statistical analysis, prediction and control
of time series.
Author: The Institute of Statistical Mathematics
Maintainer: The Institute of Statistical Mathematics
DESCRIPTION | 6
MD5 | 118 ++---
data/Airpolution.rda |binary
data/Amerikamaru.rda |binary
data/Blsallfood.rda |binary
data/Canadianlynx.rda |binary
data/LaborData.rda |binary
data/MYE1F.rda |binary
data/Powerplant.rda |binary
data/bispecData.rda |binary
data/locarData.rda |binary
data/nonstData.rda |binary
inst/doc/changes.txt | 8
inst/doc/timsac-manual.pdf |binary
src/armaf.f | 1
src/auspecf.f | 1
src/autarmf.f | 1
src/autcorf.f | 1
src/bayseaf.f | 5
src/bispecf.f | 1
src/blocarf.f | 1
src/blomarf.f | 1
src/bsubstf.f | 933 +++++----------------------------------------
src/canarmf.f | 3
src/canocaf.f | 1
src/comsub.f | 15
src/covgenf.f | 1
src/exsarf.f | 3
src/fftcorf.f | 1
src/fpeautf.f | 1
src/fpecf.f | 1
src/markovf.f | 1
src/mlocarf.f | 1
src/mlomarf.f | 3
src/mulbarf.f | 1
src/mulcorf.f | 1
src/mulfref.f | 1
src/mulmar.c | 15
src/mulmarf.f | 1
src/mulnosf.f | 1
src/mulrspf.f | 1
src/mulspef.f | 1
src/ngsmthf.f | 1
src/nonstf.f | 1
src/optdesf.f | 1
src/optsimf.f | 1
src/perarsf.f | 3
src/prdctrf.f | 1
src/raspecf.f | 1
src/sglfref.f | 1
src/simconf.f | 1
src/smoothf.f | 1
src/thirmof.f | 1
src/tvarf.f | 2
src/tvspcf.f | 1
src/tvvarf.f | 1
src/unibarf.f | 1
src/unimarf.f | 1
src/wnoisef.f | 1
src/xsarmaf.f | 1
60 files changed, 203 insertions(+), 948 deletions(-)
Path: /cran/updated | permanent link
Title: Graphic Extensions for Categorical Data
Diff between extracat versions 1.4-0 dated 2011-08-30 and 1.5-0 dated 2012-05-15
More information about extracat at CRAN
Description: graphic extensions for categorical data
Author: Alexander Pilhoefer
Maintainer: Alexander Pilhoefer
extracat-1.4-0/extracat/R/irmb2.R |only
extracat-1.4-0/extracat/R/optile_skeleton.R |only
extracat-1.4-0/extracat/man/bloma.Rd |only
extracat-1.4-0/extracat/man/irmb.Rd |only
extracat-1.5-0/extracat/DESCRIPTION | 13
extracat-1.5-0/extracat/MD5 | 79
extracat-1.5-0/extracat/NAMESPACE | 13
extracat-1.5-0/extracat/R/arsim.R |only
extracat-1.5-0/extracat/R/boxplot2g.R |only
extracat-1.5-0/extracat/R/caclust.R |only
extracat-1.5-0/extracat/R/cpcp2.R | 2
extracat-1.5-0/extracat/R/dcov.R |only
extracat-1.5-0/extracat/R/fastRcrit.R |only
extracat-1.5-0/extracat/R/fechner.R |only
extracat-1.5-0/extracat/R/fluctuations.R | 427 +-
extracat-1.5-0/extracat/R/getsets.R | 74
extracat-1.5-0/extracat/R/hexpie.R |only
extracat-1.5-0/extracat/R/kendalls.R |only
extracat-1.5-0/extracat/R/newrmb5.R | 417 +-
extracat-1.5-0/extracat/R/optile_skeleton.r |only
extracat-1.5-0/extracat/R/rmbmat.R |only
extracat-1.5-0/extracat/data/.Rhistory |only
extracat-1.5-0/extracat/data/CPScluster.rda |binary
extracat-1.5-0/extracat/data/carcustomers.rda |binary
extracat-1.5-0/extracat/data/dmc.rda |binary
extracat-1.5-0/extracat/data/olives.rda |only
extracat-1.5-0/extracat/data/plants.rda |only
extracat-1.5-0/extracat/depr |only
extracat-1.5-0/extracat/man/arsim.Rd |only
extracat-1.5-0/extracat/man/boxplot2g.Rd |only
extracat-1.5-0/extracat/man/carcustomers.Rd | 156
extracat-1.5-0/extracat/man/cfluctile.Rd | 34
extracat-1.5-0/extracat/man/cpcp.Rd | 12
extracat-1.5-0/extracat/man/dcor.Rd |only
extracat-1.5-0/extracat/man/dmc.Rd | 5
extracat-1.5-0/extracat/man/extracat.Rd | 99
extracat-1.5-0/extracat/man/fluctile.Rd | 57
extracat-1.5-0/extracat/man/fluctile3d.Rd |only
extracat-1.5-0/extracat/man/hexpie.Rd |only
extracat-1.5-0/extracat/man/ihcrit.Rd |only
extracat-1.5-0/extracat/man/innerval.Rd |only
extracat-1.5-0/extracat/man/kendalls.Rd |only
extracat-1.5-0/extracat/man/listen.Rd | 103
extracat-1.5-0/extracat/man/olives.Rd |only
extracat-1.5-0/extracat/man/optile.Rd | 66
extracat-1.5-0/extracat/man/plants.Rd |only
extracat-1.5-0/extracat/man/quickfechner.Rd |only
extracat-1.5-0/extracat/man/regmax.Rd |only
extracat-1.5-0/extracat/man/resort.Rd | 120
extracat-1.5-0/extracat/man/rmb.Rd | 61
extracat-1.5-0/extracat/man/rmbmat.Rd |only
extracat-1.5-0/extracat/man/spread.Rd | 8
extracat-1.5-0/extracat/man/subtable.Rd | 7
extracat-1.5-0/extracat/man/subtree.Rd |only
extracat-1.5-0/extracat/man/tfluctile.Rd |only
extracat-1.5-0/extracat/man/untableSet.Rd | 15
extracat-1.5-0/extracat/src/optile.c | 4604 +++++++++++++++++---------
57 files changed, 4276 insertions(+), 2096 deletions(-)
Path: /cran/updated | permanent link
Title: Spatially explicit capture-recapture
Diff between secr versions 2.3.1 dated 2011-12-20 and 2.3.2 dated 2012-05-15
More information about secr at CRAN
Description: Functions to estimate the density and size of a spatially
distributed animal population sampled with an array of passive
detectors, such as traps, or by searching polygons or
transects. Models incorporating distance-dependent detection
are fitted by maximizing the likelihood. Tools are included for
data manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford
secr-2.3.1/secr/R/phi.designdata.R |only
secr-2.3.2/secr/DESCRIPTION | 17
secr-2.3.2/secr/MD5 | 153 ++--
secr-2.3.2/secr/NAMESPACE | 4
secr-2.3.2/secr/NEWS | 91 ++
secr-2.3.2/secr/R/D.designdata.R | 2
secr-2.3.2/secr/R/autoini.R | 13
secr-2.3.2/secr/R/empirical.R | 23
secr-2.3.2/secr/R/esa.R | 5
secr-2.3.2/secr/R/functions.R | 84 --
secr-2.3.2/secr/R/fxi.R | 9
secr-2.3.2/secr/R/join.R | 34
secr-2.3.2/secr/R/make.capthist.R | 86 +-
secr-2.3.2/secr/R/make.mask.R | 26
secr-2.3.2/secr/R/methods.R | 287 +++++--
secr-2.3.2/secr/R/model.average.R | 16
secr-2.3.2/secr/R/pdot.R | 2
secr-2.3.2/secr/R/plot.secr.R | 26
secr-2.3.2/secr/R/randomHabitat.r |only
secr-2.3.2/secr/R/read.traps.R | 5
secr-2.3.2/secr/R/reduce.capthist.R | 26
secr-2.3.2/secr/R/regionN.R | 23
secr-2.3.2/secr/R/secr.design.MS.R | 81 +-
secr-2.3.2/secr/R/secr.fit.R | 146 +--
secr-2.3.2/secr/R/sim.capthist.R | 52 -
secr-2.3.2/secr/R/sim.popn.R | 22
secr-2.3.2/secr/R/sim.secr.R | 17
secr-2.3.2/secr/R/trap.builder.R | 21
secr-2.3.2/secr/R/utility.R | 52 +
secr-2.3.2/secr/R/verify.R | 10
secr-2.3.2/secr/data/deermouse.RData |binary
secr-2.3.2/secr/data/hornedlizard.RData |binary
secr-2.3.2/secr/data/housemouse.RData |binary
secr-2.3.2/secr/data/ovenbird.RData |binary
secr-2.3.2/secr/data/ovensong.RData |binary
secr-2.3.2/secr/data/possum.RData |binary
secr-2.3.2/secr/data/secrdemo.RData |binary
secr-2.3.2/secr/data/skink.RData |binary
secr-2.3.2/secr/data/stoatDNA.RData |binary
secr-2.3.2/secr/inst/doc/secr-datainput.pdf |binary
secr-2.3.2/secr/inst/doc/secr-densitysurfaces.pdf |binary
secr-2.3.2/secr/inst/doc/secr-finitemixtures.pdf |binary
secr-2.3.2/secr/inst/doc/secr-manual.pdf |binary
secr-2.3.2/secr/inst/doc/secr-overview.pdf |binary
secr-2.3.2/secr/inst/doc/secr-polygondetectors.pdf |binary
secr-2.3.2/secr/inst/doc/secr-sound.pdf |binary
secr-2.3.2/secr/man/RMarkInput.Rd | 19
secr-2.3.2/secr/man/capthistfn.Rd | 7
secr-2.3.2/secr/man/derivedMS.Rd | 3
secr-2.3.2/secr/man/empirical.Rd | 26
secr-2.3.2/secr/man/expected.n.Rd | 4
secr-2.3.2/secr/man/hornedlizard.Rd | 2
secr-2.3.2/secr/man/make.capthist.Rd | 8
secr-2.3.2/secr/man/make.mask.Rd | 10
secr-2.3.2/secr/man/make.traps.Rd | 6
secr-2.3.2/secr/man/make.tri.Rd | 2
secr-2.3.2/secr/man/model.average.Rd | 3
secr-2.3.2/secr/man/ovenbird.Rd | 2
secr-2.3.2/secr/man/plot.traps.Rd | 21
secr-2.3.2/secr/man/pointsInPolygon.Rd | 16
secr-2.3.2/secr/man/possum.Rd | 29
secr-2.3.2/secr/man/print.secr.Rd | 4
secr-2.3.2/secr/man/randomHabitat.Rd |only
secr-2.3.2/secr/man/rbind.traps.Rd | 2
secr-2.3.2/secr/man/region.N.Rd | 39 -
secr-2.3.2/secr/man/secr-package.Rd | 7
secr-2.3.2/secr/man/secr.fit.Rd | 31
secr-2.3.2/secr/man/sim.popn.Rd | 18
secr-2.3.2/secr/man/subset.capthist.Rd | 13
secr-2.3.2/secr/man/suggest.buffer.Rd | 2
secr-2.3.2/secr/man/transformations.Rd | 6
secr-2.3.2/secr/man/trap.builder.Rd | 5
secr-2.3.2/secr/man/troubleshooting.Rd | 4
secr-2.3.2/secr/src/detectfn.c | 76 +-
secr-2.3.2/secr/src/secr.c | 779 ++++++++++-----------
secr-2.3.2/secr/src/secr.h | 75 --
secr-2.3.2/secr/src/simsecr.c | 90 +-
secr-2.3.2/secr/src/trapping.c | 93 +-
secr-2.3.2/secr/src/utils.c | 41 -
79 files changed, 1726 insertions(+), 1050 deletions(-)
Path: /cran/updated | permanent link
Title: Redis client for R
Diff between rredis versions 1.6.3 dated 2011-10-23 and 1.6.6 dated 2012-05-15
More information about rredis at CRAN
Description: An R client for the Redis persistent key-value database
available from http://redis.io.
Author: B. W. Lewis
Maintainer: B. W. Lewis
DESCRIPTION | 13 ++++++-------
MD5 | 12 +++++++-----
NEWS | 7 +++++++
R/hashCMD.R | 29 ++++++++++++++++++++---------
R/redis-internal.R | 23 +++++++++++++++++++----
inst/doc/rredis.pdf |binary
man/redisCmd.Rd |only
man/redisHMGet.Rd |only
8 files changed, 59 insertions(+), 25 deletions(-)
Path: /cran/updated | permanent link
Title: R Interface to FishBASE
Diff between rfishbase versions 0.0-8 dated 2012-04-03 and 0.0-9 dated 2012-05-15
More information about rfishbase at CRAN
Description: A programmatic interface to fishbase.org.
Author: Carl Boettiger [aut, cre], Duncan Temple Lang [aut], Peter C.
Wainwright [aut]
Maintainer: Carl Boettiger,
rfishbase-0.0-8/rfishbase/demo |only
rfishbase-0.0-8/rfishbase/man/tree.Rd |only
rfishbase-0.0-9/rfishbase/DESCRIPTION | 16 ++-
rfishbase-0.0-9/rfishbase/MD5 | 81 ++++++++++++----
rfishbase-0.0-9/rfishbase/NAMESPACE | 5 -
rfishbase-0.0-9/rfishbase/NEWS | 18 ++-
rfishbase-0.0-9/rfishbase/R/analysis.R | 115 +++++++++++++++---------
rfishbase-0.0-9/rfishbase/R/cacheFB.R | 30 ++++--
rfishbase-0.0-9/rfishbase/R/fishbase.R | 8 -
rfishbase-0.0-9/rfishbase/README.md | 46 +++++++--
rfishbase-0.0-9/rfishbase/data/datalist | 2
rfishbase-0.0-9/rfishbase/data/labridtree.rda |binary
rfishbase-0.0-9/rfishbase/inst |only
rfishbase-0.0-9/rfishbase/man/familySearch.Rd | 15 ---
rfishbase-0.0-9/rfishbase/man/findSpecies.Rd | 12 +-
rfishbase-0.0-9/rfishbase/man/fish.data.Rd | 4
rfishbase-0.0-9/rfishbase/man/fish_names.Rd | 18 ++-
rfishbase-0.0-9/rfishbase/man/getDepth.Rd | 9 +
rfishbase-0.0-9/rfishbase/man/getQuantTraits.Rd | 11 +-
rfishbase-0.0-9/rfishbase/man/getRefs.Rd |only
rfishbase-0.0-9/rfishbase/man/getSize.Rd | 10 +-
rfishbase-0.0-9/rfishbase/man/habitatSearch.Rd | 10 --
rfishbase-0.0-9/rfishbase/man/labridtree.Rd |only
rfishbase-0.0-9/rfishbase/man/loadCache.Rd | 9 -
rfishbase-0.0-9/rfishbase/man/updateCache.Rd | 12 +-
rfishbase-0.0-9/rfishbase/man/which_fish.Rd | 15 ++-
26 files changed, 287 insertions(+), 159 deletions(-)
Path: /cran/updated | permanent link