Wed, 24 Aug 2016

Package stochvol updated to version 1.3.0 with previous version 1.2.3 dated 2016-02-18

Title: Efficient Bayesian Inference for Stochastic Volatility (SV) Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods.
Author: Gregor Kastner [aut, cre]
Maintainer: Gregor Kastner <gregor.kastner@wu.ac.at>

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New package seleniumPipes with initial version 0.3.0
Package: seleniumPipes
Type: Package
Title: R Client Implementing the W3C WebDriver Specification
Version: 0.3.0
Description: The W3C WebDriver specification defines a way for out-of-process programs to remotely instruct the behaviour of web browsers. It is detailed at <https://w3c.github.io/webdriver/webdriver-spec.html>. This package provides an R client implementing the W3C specification.
Authors@R: c( person("John", "Harrison", , "johndharrison0@gmail.com", role = c("aut", "cre")))
Depends: R (>= 3.0.0),httr,jsonlite,xml2,magrittr,whisker
Encoding: UTF-8
License: GPL-3
Suggests: RSelenium, knitr, rmarkdown, testthat, data.table
RoxygenNote: 5.0.1
URL: https://github.com/johndharrison/seleniumPipes
BugReports: https://github.com/johndharrison/seleniumPipes/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-24 16:42:57 UTC; john
Author: John Harrison [aut, cre]
Maintainer: John Harrison <johndharrison0@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-24 21:45:54

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Package accrued updated to version 1.4.1 with previous version 1.4 dated 2016-05-10

Title: Data Quality Visualization Tools for Partially Accruing Data
Description: Package for visualizing data quality of partially accruing data.
Author: Julie Eaton and Ian Painter
Maintainer: Julie Eaton <jreaton@uw.edu>

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Package timevis updated to version 0.2 with previous version 0.1 dated 2016-07-25

Title: Create Interactive Timeline Visualizations in R
Description: Create rich and fully interactive timeline visualizations. Timelines can be included in Shiny apps and R markdown documents, or viewed from the R console and RStudio Viewer. 'timevis' includes an extensive API to manipulate a timeline after creation, and supports getting data out of the visualization into R. Based on the 'vis.js' Timeline module and the 'htmlwidgets' R package.
Author: Dean Attali [aut, cre] (R interface), Almende B.V. [aut, cph] (vis.js library, http://visjs.org, http://www.almende.com/home)
Maintainer: Dean Attali <daattali@gmail.com>

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Package rnrfa updated to version 0.5.4 with previous version 0.5.3 dated 2016-05-12

Title: UK National River Flow Archive Data from R
Description: Utility functions to retrieve data from the UK National River Flow Archive. The package contains R wrappers to the UK NRFA data temporary-API. There are functions to retrieve stations falling in a bounding box, to generate a map and extracting time series and general information.
Author: Claudia Vitolo [aut, cre], Matthew Fry [ctb] (Matthew supervised the unofficial API integration.), Wouter Buytaert [ctb] (This package is part of Claudia Vitolo's PhD work and Wouter is the supervisor.), Michael Spencer [ctb] (Michael updated the function OSGparse to work with grid references of different lengths.)
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>

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Package RcmdrPlugin.lfstat updated to version 0.8.1 with previous version 0.7 dated 2013-12-18

Title: Rcmdr Plug-in for Low Flow Analysis
Description: Provides an Rcmdr "plug-in" based on the lfstat package for low flow analysis.
Author: Daniel Koffler and Gregor Laaha
Maintainer: Tobias Gauster <t.gauster@boku.ac.at>

Diff between RcmdrPlugin.lfstat versions 0.7 dated 2013-12-18 and 0.8.1 dated 2016-08-24

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Package Rcmdr updated to version 2.3-0 with previous version 2.2-5 dated 2016-06-17

Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre], Milan Bouchet-Valat [aut], Liviu Andronic [ctb], Michael Ash [ctb], Theophilius Boye [ctb], Stefano Calza [ctb], Andy Chang [ctb], Philippe Grosjean [ctb], Richard Heiberger [ctb], Kosar Karimi Pour [ctb], G. Jay Kerns [ctb], Renaud Lancelot [ctb], Matthieu Lesnoff [ctb], Uwe Ligges [ctb], Samir Messad [ctb], Martin Maechler [ctb], Robert Muenchen [ctb], Duncan Murdoch [ctb], Erich Neuwirth [ctb], Dan Putler [ctb], Brian Ripley [ctb], Miroslav Ristic [ctb], Peter Wolf [ctb], Kevin Wright [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>

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Package pwr updated to version 1.2-0 with previous version 1.1-4 dated 2016-08-04

Title: Basic Functions for Power Analysis
Description: Power analysis functions along the lines of Cohen (1988).
Author: Stephane Champely [aut], Claus Ekstrom [ctb], Peter Dalgaard [ctb], Jeffrey Gill [ctb], Stephan Weibelzahl [ctb], Helios De Rosario [cre]
Maintainer: Helios De Rosario <helios.derosario@gmail.com>

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Package oglmx updated to version 2.0.0.1 with previous version 2.0.0.0 dated 2016-05-27

Title: Estimation of Ordered Generalized Linear Models
Description: Ordered models such as ordered probit and ordered logit presume that the error variance is constant across observations. In the case that this assumption does not hold estimates of marginal effects are typically biased. This package allows for generalization of ordered probit and ordered logit models by allowing the user to specify a model for the variance. Furthermore, the package includes functions to calculate the marginal effects. Wrapper functions to estimate the standard limited dependent variable models are also included.
Author: Nathan Carroll
Maintainer: Nathan Carroll <nathan.carroll@ur.de>

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Package mev updated to version 1.8.2 with previous version 1.6.1 dated 2016-03-15

Title: Multivariate Extreme Value Distributions
Description: Exact simulation from max-stable processes and multivariate extreme value distributions for various parametric models. Threshold selection methods.
Author: Leo Belzile [aut, cre], Jennifer L. Wadsworth [aut], Paul J. Northrop [aut], Scott D. Grimshaw [aut], Jin. Zhang [ctb], Michael A. Stephens [ctb], Art B. Owen [ctb], Anthony C. Davison [ctb], Raphael Huser [aut]
Maintainer: Leo Belzile <leo.belzile@epfl.ch>

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New package makeFlow with initial version 1.0.2
Package: makeFlow
Type: Package
Title: Visualizing Sequential Classifications
Version: 1.0.2
Date: 2016-08-22
Author: Alex J. Krebs
Maintainer: Alex J. Krebs <Krebs.AlexJ@gmail.com>
Description: A user-friendly tool for visualizing categorical or group movement.
License: GPL (>= 2)
Imports: dplyr, RColorBrewer
Copyright: Copyright Notice GENERAL DISCLAIMER This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. In short: You may use it any way you like, as long as you do not charge money for it, remove this notice, or hold anyone liable for its results. Also, please acknowledge the source and communicate changes to the author. If this software is used in work presented for publication, kindly reference it using for example: Krebs AJ (2016): makeFlow: Visualizing Sequential Classifications. Be sure to reference R itself and other libraries used.
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-24 06:27:15 UTC; DELL PC
Repository: CRAN
Date/Publication: 2016-08-24 18:02:38

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Package lfstat updated to version 0.9.4 with previous version 0.9.0 dated 2016-07-01

Title: Calculation of Low Flow Statistics for Daily Stream Flow Data
Description: The "Manual on Low-flow Estimation and Prediction", published by the World Meteorological Organisation (WMO), gives a comprehensive summary on how to analyse stream flow data focusing on low-flows. This packages provides functions to compute the described statistics and produces plots similar to the ones in the manual.
Author: Daniel Koffler, Tobias Gauster and Gregor Laaha
Maintainer: Tobias Gauster <t.gauster@boku.ac.at>

Diff between lfstat versions 0.9.0 dated 2016-07-01 and 0.9.4 dated 2016-08-24

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Package LDheatmap updated to version 0.99-2 with previous version 0.99-1 dated 2013-09-21

Title: Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Description: Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.
Author: Ji-Hyung Shin <shin@sfu.ca>, Sigal Blay <sblay@sfu.ca>, Nicholas Lewin-Koh <nikko@hailmail.net>, Brad McNeney <mcneney@sfu.ca>, Jinko Graham <jgraham@sfu.ca>
Maintainer: Brad McNeney <mcneney@sfu.ca>

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New package JWileymisc with initial version 0.2.0
Package: JWileymisc
Type: Package
Title: Miscellaneous Utilities and Functions
Version: 0.2.0
Date: 2016-08-24
Author: Joshua F. Wiley <jwiley.psych@gmail.com>
Maintainer: Joshua F. Wiley <jwiley.psych@gmail.com>
Description: A collection of miscellaneous tools and functions, such as tools to generate descriptive statistics tables, format output, visualize relations among variables or check distributions.
License: GPL (>= 3)
Depends: R (>= 3.2.0), data.table (>= 1.9.6), ggplot2 (>= 0.9.0), cowplot, foreach, lavaan (>= 0.5-15)
Imports: stats, utils, Hmisc, multcompView, devtools, graphics, mgcv, plyr, mice
Suggests: scales, testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-24 12:04:15 UTC; jwile
Repository: CRAN
Date/Publication: 2016-08-24 18:38:27

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Package funreg updated to version 1.2 with previous version 1.1 dated 2014-06-20

Title: Functional Regression for Irregularly Timed Data
Description: Performs functional regression, and some related approaches, for intensive longitudinal data (see the book by Walls & Schafer, 2006, Models for Intensive Longitudinal Data, Oxford) when such data is not necessarily observed on an equally spaced grid of times. The approach generally follows the ideas of Goldsmith, Bobb, Crainiceanu, Caffo, and Reich (2011)<DOI:10.1198/jcgs.2010.10007> and the approach taken in their sample code, but with some modifications to make it more feasible to use with long rather than wide, non-rectangular longitudinal datasets with unequal and potentially random measurement times. It also allows easy plotting of the correlation between the smoothed covariate and the outcome as a function of time, which can add additional insights on how to interpret a functional regression. Additionally, it also provides several permutation tests for the significance of the functional predictor. The heuristic interpretation of ``time'' is used to describe the index of the functional predictor, but the same methods can equally be used for another unidimensional continuous index, such as space along a north-south axis. The development of this package was part of a research project supported by Award R03 CA171809-01 from the National Cancer Institute and Award P50 DA010075 from the National Institute on Drug Abuse. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institute on Drug Abuse, the National Cancer Institute, or the National Institutes of Health.
Author: John Dziak [aut, cre], Mariya Shiyko [aut]
Maintainer: John Dziak <jjd264@psu.edu>

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Package edci updated to version 1.1-2 with previous version 1.1-1 dated 2016-06-02

Title: Edge Detection and Clustering in Images
Description: Detection of edge points in images based on the difference of two asymmetric M-kernel estimators. Linear and circular regression clustering based on redescending M-estimators. Detection of linear edges in images.
Author: Tim Garlipp <TimGarlipp@gmx.de>
Maintainer: Dominik Kirchhoff <dominik.kirchhoff@tu-dortmund.de>

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New package evidenceFactors with initial version 1.00
Package: evidenceFactors
Type: Package
Title: Reporting Tools for Sensitivity Analysis of Evidence Factors in Observational Studies
Version: 1.00
Date: 2016-08-16
Author: Bikram Karmakar
Maintainer: Bikram Karmakar <bikramk@wharton.upenn.edu>
Description: Integrated Sensitivity Analysis of Evidence Factors in Observational Studies.
License: GPL-2
Imports: sensitivitymv
NeedsCompilation: no
Packaged: 2016-08-23 21:01:09 UTC; bikramk
Repository: CRAN
Date/Publication: 2016-08-24 18:02:36

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Package DiffusionRimp updated to version 0.1.2 with previous version 0.1.1 dated 2016-08-16

Title: Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines
Description: Tools for performing inference and analysis using a data-imputation scheme and the method of lines.
Author: Etienne A.D. Pienaar [aut, cre], Melvin M. Varughese [ctb]
Maintainer: Etienne A.D. Pienaar <etiennead@gmail.com>

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Package dglm updated to version 1.8.3 with previous version 1.8.2 dated 2015-11-05

Title: Double Generalized Linear Models
Description: Model fitting and evaluation tools for double generalized linear models (DGLMs). This class of models uses one generalized linear model (GLM) to fit the specified response and a second GLM to fit the deviance of the first model.
Author: Peter K Dunn <pdunn2@usc.edu.au> and Gordon K Smyth
Maintainer: Robert Corty <robert_corty@med.unc.edu>

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Package ChannelAttribution updated to version 1.9 with previous version 1.8 dated 2016-07-26

Title: Markov Model for the Online Multi-Channel Attribution Problem
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. It's called the online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identifying structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare
Maintainer: Davide Altomare <davide.altomare@gmail.com>

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Package arm updated to version 1.9-1 with previous version 1.8-6 dated 2015-07-11

Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing 'lm', 'glm', 'svy.glm', 'merMod' and 'polr' outputs.
Author: Andrew Gelman [aut], Yu-Sung Su [aut, cre], Masanao Yajima [ctb], Jennifer Hill [ctb], Maria Grazia Pittau [ctb], Jouni Kerman [ctb], Tian Zheng [ctb], Vicent Dorie [ctb]
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>

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New package not with initial version 1.0
Package: not
Type: Package
Title: Narrowest-Over-Threshold Change-Point Detection
Version: 1.0
Date: 2016-08-01
Author: Rafal Baranowski, Yining Chen, Piotr Fryzlewicz
Maintainer: Rafal Baranowski <r.baranowski@lse.ac.uk>
Depends: graphics, stats, splines
Description: Provides efficient implementation of the Narrowest-Over-Threshold methodology for detecting an unknown number of change-points occurring at unknown locations in one-dimensional data following 'deterministic signal + noise' model. Currently implemented scenarios are: piecewise-constant signal, piecewise-constant signal with a heavy-tailed noise, piecewise-linear signal, piecewise-quadratic signal, piecewise-constant signal and with piecewise-constant variance of the noise.
License: GPL-2
NeedsCompilation: yes
RoxygenNote: 5.0.1
Packaged: 2016-08-23 18:14:43 UTC; rafal
Repository: CRAN
Date/Publication: 2016-08-23 23:15:50

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Package FSAdata updated to version 0.3.4 with previous version 0.3.3 dated 2016-07-18

Title: Data to Support Fish Stock Assessment ('FSA') Package
Description: The datasets to support the Fish Stock Assessment ('FSA') package.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>

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Package FRAPO updated to version 0.4-0 with previous version 0.3-8 dated 2013-06-18

Title: Financial Risk Modelling and Portfolio Optimisation with R
Description: Accompanying package of the book 'Financial Risk Modelling and Portfolio Optimisation with R', second edition. The data sets used in the book are contained in this package.
Author: Bernhard Pfaff [aut, cre]
Maintainer: Bernhard Pfaff <bernhard@pfaffikus.de>

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Tue, 23 Aug 2016

Package toxboot updated to version 0.1.1 with previous version 0.1.0 dated 2016-08-12

Title: Bootstrap Methods for 'ToxCast' High Throughput Screening Data
Description: Provides methods to use bootstrapping to quantify uncertainty in fitting 'ToxCast' concentration response data. Data is stored in memory, written to file, or stored in 'MySQL' or 'MongoDB' databases.
Author: Eric D. Watt [aut, cre]
Maintainer: Eric D. Watt <eric@ericdwatt.com>

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New package onlineCPD with initial version 1.0
Package: onlineCPD
Type: Package
Title: Detect Changepoints in Multivariate Time Series
Version: 1.0
Date: 2016-07-28
Author: Zachary Zanussi <zachary9506@gmail.com>
Maintainer: Zachary Zanussi <zachary9506@gmail.com>
Description: Detects multiple changepoints in uni- or multivariate time series data. The algorithm is based on Bayesian methods and detects changes on-line; i.e. the model updates with every observation rather than relying on retrospective segmentation. However, the user may choose to use the algorithm off- or on-line.
License: GPL-3
Imports: ggplot2
Depends: scales, gridExtra, reshape2
NeedsCompilation: no
Packaged: 2016-08-23 16:23:14 UTC; zanussiz
Repository: CRAN
Date/Publication: 2016-08-23 20:00:17

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Package MixSIAR updated to version 3.1.7 with previous version 3.1.6 dated 2016-06-25

Title: Bayesian Mixing Models in R
Description: Creates and runs Bayesian mixing models to analyze biotracer data (i.e. stable isotopes, fatty acids), which estimate the proportions of source (prey) contributions to a mixture (consumer). 'MixSIAR' is not one model, but a framework that allows a user to create a mixing model based on their data structure and research questions, via options for fixed/ random effects, source data types, priors, and error terms. 'MixSIAR' incorporates several years of advances since 'MixSIR' and 'SIAR', and includes both GUI (graphical user interface) and script versions.
Author: Brian Stock [cre, aut], Brice Semmens [aut], Eric Ward [ctb], Andrew Parnell [ctb], Andrew Jackson [ctb], Donald Phillips [ctb], Jon Moore [ctb], Stuart Bearhop [ctb], Richard Inger [ctb]
Maintainer: Brian Stock <b1stock@ucsd.edu>

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Package tm.plugin.europresse updated to version 1.4 with previous version 1.3 dated 2015-07-28

Title: Import Articles from 'Europresse' Using the 'tm' Text Mining Framework
Description: Provides a 'tm' Source to create corpora from articles exported from the 'Europresse' content provider as HTML files. It is able to read both text content and meta-data information (including source, date, title, author and pages).
Author: Milan Bouchet-Valat [aut, cre]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>

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Package splancs updated to version 2.01-39 with previous version 2.01-38 dated 2015-09-28

Title: Spatial and Space-Time Point Pattern Analysis
Description: The Splancs package was written as an enhancement to S-Plus for display and analysis of spatial point pattern data; it has been ported to R and is in "maintenance mode".
Author: Roger Bivand [cre], Barry Rowlingson [aut], Peter Diggle [aut], Giovanni Petris [ctb], Stephen Eglen [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

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Package bedr updated to version 1.0.3 with previous version 1.0.2 dated 2015-09-21

Title: Genomic Region Processing using Tools Such as BEDtools, BEDOPS and Tabix
Description: Genomic regions processing using open-source command line tools such as BEDtools, BEDOPS and Tabix. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.
Author: Daryl Waggott, Syed Haider, Emilie Lalonde, Clement Fung, Paul C. Boutros
Maintainer: Paul Boutros <Paul.Boutros@oicr.on.ca>

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New package red with initial version 0.1.0
Package: red
Title: IUCN Redlisting Tools
Version: 0.1.0
Date: 2016-08-19
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Description: Includes algorithms to facilitate the assessment of extinction risk of species according to the IUCN (International Union for Conservation of Nature, see <http://www.iucn.org> for more information) red list criteria.
Depends: R (>= 3.0.0)
Imports: BAT, dismo, geosphere, graphics, grDevices, igraph, maptools, raster, rgdal, rgeos, rJava, sp, stats, utils
License: GPL-3
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-22 11:09:27 UTC; localadmin_pcardoso
Repository: CRAN
Date/Publication: 2016-08-23 15:55:29

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Package move updated to version 2.1.0 with previous version 2.0.0 dated 2016-06-13

Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org' as well as tools to visualize and statistically analyze animal movement data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement ecology questions.
Author: Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>, Marco Smolla <marco.smolla@postgrad.manchester.ac.uk>
Maintainer: Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>

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Package LMest updated to version 2.3 with previous version 2.2 dated 2016-02-25

Title: Latent Markov Models with and without Covariates
Description: Fit certain versions of the Latent Markov model for longitudinal categorical data.
Author: Francesco Bartolucci, Silvia Pandolfi - University of Perugia (IT)
Maintainer: Francesco Bartolucci <bart@stat.unipg.it>

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Package FFTrees updated to version 1.1.4 with previous version 1.1.3 dated 2016-08-16

Title: Generate, Visualise, and Compare Fast and Frugal Decision Trees
Description: Contains several functions that allow you to create, visualise, and test Fast and Frugal Trees (FFTrees). FFTrees are very simple decision trees for classifying cases (i.e.; breast cancer patients) into one of two classes (e.g.; no cancer vs. true cancer) based on a small number of cues (e.g.; test results). FFTrees can be preferable to more complex algorithms (such as logistic regression) because they are easy to communicate and implement, and are robust against noisy data.
Author: Nathaniel Phillips [aut, cre]
Maintainer: Nathaniel Phillips <Nathaniel.D.Phillips.is@gmail.com>

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Package EPGLM updated to version 1.1.2 with previous version 1.1.1 dated 2016-01-09

Title: Gaussian Approximation of Bayesian Binary Regression Models
Description: The main functions compute the expectation propagation approximation of a Bayesian probit/logit models with Gaussian prior. More information can be found in Chopin and Ridgway (2015). More models and priors should follow.
Author: James Ridgway
Maintainer: James Ridgway <james.ridgway@ensae.fr>

Diff between EPGLM versions 1.1.1 dated 2016-01-09 and 1.1.2 dated 2016-08-23

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New package ecr with initial version 1.0
Package: ecr
Type: Package
Title: Evolutionary Computing in R
Description: Provides a powerful framework for evolutionary computing in R. The user can easily construct powerful evolutionary algorithms for tackling both single- and multi-objective problems by plugging in different predefined evolutionary building blocks, e. g., operators for mutation, recombination and selection with just a few lines of code. Your problem cannot be easily solved with a standard EA which works on real-valued vectors, permutations or binary strings? No problem, 'ecr' has been developed with that in mind. Extending the framework with own operators is also possible. Additionally there are various comfort functions, like monitoring, logging and more.
Version: 1.0
Encoding: UTF-8
Date: 2016-08-22
Authors@R: c(person("Jakob", "Bossek", email = "j.bossek@gmail.com", role = c("aut", "cre")), person("Dirk", "Surmann", email = "surmann@statistik.tu-dortmund.de", role = "ctb"))
Maintainer: Jakob Bossek <j.bossek@gmail.com>
License: BSD_2_clause + file LICENSE
URL: https://github.com/jakobbossek/ecr
BugReports: https://github.com/jakobbossek/ecr/issues
Depends: ParamHelpers (>= 1.8), BBmisc (>= 1.6), smoof (>= 1.4), ggplot2 (>= 1.0.0)
Imports: checkmate (>= 1.1), parallelMap (>= 1.1), reshape2 (>= 1.4.1), gridExtra (>= 0.9.1)
Suggests: testthat (>= 0.9.1)
ByteCompile: yes
LazyData: yes
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-23 10:21:07 UTC; jboss
Author: Jakob Bossek [aut, cre], Dirk Surmann [ctb]
Repository: CRAN
Date/Publication: 2016-08-23 15:25:09

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Package dlsem updated to version 1.3.0 with previous version 1.2.1 dated 2016-07-05

Title: Distributed-Lag Structural Equation Modelling with Second-Order Polynomial Lag Shapes
Description: Estimation and path analysis functionalities for structural equation models with second-order polynomial lag shapes.
Author: Alessandro Magrini
Maintainer: Alessandro Magrini <magrini@disia.unifi.it>

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New package Difdtl with initial version 2.0
Package: Difdtl
Type: Package
Title: Difference of Two Precision Matrices Estimation
Version: 2.0
Date: 2016-08-22
Author: Huili Yuan
Maintainer: Huili Yuan <hlyuan0116@sina.com>
Depends: MASS
Description: Difference of two precision matrices is estimated by the d-trace loss with lasso penalty, given two sample classes.
License: GPL (>= 2)
Packaged: 2016-08-23 13:13:54 UTC; hlyuan
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-08-23 16:31:09

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Package detzrcr updated to version 0.1.1 with previous version 0.1.0 dated 2016-06-29

Title: Compare Detrital Zircon Suites
Description: Compare detrital zircon suites by uploading univariate, U-Pb age, or bivariate, U-Pb age and Lu-Hf data, in a shiny-based user-interface. Outputs publication quality figures using ggplot2, and tables of statistics currently in use in the detrital zircon geochronology community.
Author: Magnus Kristoffersen [aut, cre]
Maintainer: Magnus Kristoffersen <magnus.kristoffersen@geo.uio.no>

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Package bamdit updated to version 3.0.0 with previous version 2.0.1 dated 2015-08-11

Title: Bayesian Meta-Analysis of Diagnostic Test Data
Description: Functions for Bayesian meta-analysis of diagnostic test data which are based on a scale mixtures bivariate random-effects model.
Author: Pablo Emilio Verde [aut, cre]
Maintainer: Pablo Emilio Verde <pabloemilio.verde@hhu.de>

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New package CTM with initial version 0.1
Package: CTM
Type: Package
Title: A Text Mining Toolkit for Chinese Document
Version: 0.1
Date: 2016-08-23
Author: Jim Liu
Maintainer: Jim Liu <jimliu741523@gmail.com>
Description: The CTM package is designed to solve problems of text mining and is specific for Chinese document.
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
Imports: jiebaR
NeedsCompilation: no
Packaged: 2016-08-23 10:54:51 UTC; jimliu
Repository: CRAN
Date/Publication: 2016-08-23 15:25:02

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Package rel updated to version 1.1.0 with previous version 1.0.0 dated 2016-07-31

Title: Reliability Coefficients
Description: Derives point estimates with confidence intervals for Bennett et als S, Cohen's kappa and weighted kappa, Gwet's AC1 and AC2, Krippendorff's alpha, and Scott's pi.
Author: Riccardo Lo Martire
Maintainer: Riccardo Lo Martire <lomartire@kth.se>

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Package GAS updated to version 0.1.2 with previous version 0.1.1 dated 2016-08-17

Title: Generalized Autoregressive Score Models
Description: Simulate, Estimate and Forecast using univariate and multivariate GAS models.
Author: Leopoldo Catania [aut,cre], Kris Boudt [ctb], David Ardia [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@uniroma2.it>

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Package ABCanalysis updated to version 1.1.2 with previous version 1.1.1 dated 2016-06-15

Title: Computed ABC Analysis
Description: For a given data set, the package provides a novel method of computing precise limits to acquire subsets which are easily interpreted. Closely related to the Lorenz curve, the ABC curve visualizes the data by graphically representing the cumulative distribution function. Based on an ABC analysis the algorithm calculates, with the help of the ABC curve, the optimal limits by exploiting the mathematical properties pertaining to distribution of analyzed items. The data containing positive values is divided into three disjoint subsets A, B and C, with subset A comprising very profitable values, i.e. largest data values ("the important few"), subset B comprising values where the yield equals to the effort required to obtain it, and the subset C comprising of non-profitable values, i.e., the smallest data sets ("the trivial many"). Package is based on "Computed ABC Analysis for rational Selection of most informative Variables in multivariate Data", PLoS One. Ultsch. A., Lotsch J. (2015) <DOI:10.1371/journal.pone.0129767>.
Author: Michael Thrun, Jorn Lotsch, Alfred Ultsch
Maintainer: Michael Thrun <mthrun@mathematik.uni-marburg.de>

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Package lint (with last version 0.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-01-23 0.3
2012-08-09 0.2
2012-06-25 0.1

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New package respirometry with initial version 0.1.0
Package: respirometry
Type: Package
Title: Tools for Conducting Respirometry Experiments
Version: 0.1.0
Date: 2016-08-22
Author: Matthew A. Birk
Maintainer: Matthew A. Birk <matthewabirk@gmail.com>
Description: Provides tools to enable the researcher to more precisely conduct respirometry experiments. Strong emphasis is on aquatic respirometry. Tools focus on helping the researcher setup and conduct experiments. Analysis of the resulting data is not a focus since analyses are often specific to a particular setup, and thus are better created by the researcher individually. This package provides tools for intermittent, flow-through, and closed respirometry techniques.
Imports: graphics, lubridate, marelac, measurements, methods, seacarb, stats
License: GPL-3
LazyData: TRUE
Encoding: UTF-8
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-22 18:00:35 UTC; matthewbirk
Repository: CRAN
Date/Publication: 2016-08-23 02:17:14

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Package plantecophys updated to version 1.1-8 with previous version 1.1-3 dated 2016-07-05

Title: Modelling and Analysis of Leaf Gas Exchange Data
Description: Coupled leaf gas exchange model, A-Ci curve simulation and fitting, Ball-Berry stomatal conductance models, leaf energy balance using Penman-Monteith, Cowan-Farquhar optimization, humidity unit conversions.
Author: Remko Duursma [aut, cre]
Maintainer: Remko Duursma <remkoduursma@gmail.com>

Diff between plantecophys versions 1.1-3 dated 2016-07-05 and 1.1-8 dated 2016-08-23

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Package mixsmsn updated to version 1.1-2 with previous version 1.1-1 dated 2015-11-16

Title: Fitting Finite Mixture of Scale Mixture of Skew-Normal Distributions
Description: Functions to fit finite mixture of scale mixture of skew-normal (FM-SMSN) distributions.
Author: Marcos Prates [aut, cre, trl], Victor Lachos [aut], Celso Cabral [aut]
Maintainer: Marcos Prates <marcosop@est.ufmg.br>

Diff between mixsmsn versions 1.1-1 dated 2015-11-16 and 1.1-2 dated 2016-08-23

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Package FSA updated to version 0.8.9 with previous version 0.8.8 dated 2016-07-18

Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods. Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>

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More information about FSA at CRAN
Permanent link

Mon, 22 Aug 2016

Package swfscMisc updated to version 1.2 with previous version 1.1 dated 2016-03-03

Title: Miscellaneous Functions for Southwest Fisheries Science Center
Description: Collection of conversion, analytical, geodesic, mapping, and plotting functions. Used to support packages and code written by researchers at the Southwest Fisheries Science Center of the National Oceanic and Atmospheric Administration.
Author: Eric Archer [aut, cre]
Maintainer: Eric Archer <eric.archer@noaa.gov>

Diff between swfscMisc versions 1.1 dated 2016-03-03 and 1.2 dated 2016-08-22

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New package liqueueR with initial version 0.0.1
Package: liqueueR
Type: Package
Title: Implements Queue, PriorityQueue and Stack Classes
Version: 0.0.1
Authors@R: person("Andrew", "Collier", email = "andrew@exegetic.biz", role = c("aut", "cre"))
Description: Provides three classes: Queue, PriorityQueue and Stack. Queue is just a "plain vanilla" FIFO queue; PriorityQueue orders items according to priority. Stack implements LIFO.
URL: https://github.com/DataWookie/liqueueR
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: itertools, methods
Suggests: testthat, iterators
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-22 12:23:56 UTC; colliera
Author: Andrew Collier [aut, cre]
Maintainer: Andrew Collier <andrew@exegetic.biz>
Repository: CRAN
Date/Publication: 2016-08-22 19:53:24

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Package ISOpureR updated to version 1.0.21 with previous version 1.0.20 dated 2016-07-23

Title: Deconvolution of Tumour Profiles
Description: Deconvolution of mixed tumour profiles into normal and cancer for each patient, using the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires mixed tumour profiles and a set of unmatched "basis" normal profiles.
Author: Gerald Quon [aut], Catalina V Anghel [aut, trl], Syed Haider [aut], Francis Nguyen [aut], Amit G Deshwar [aut], Quaid D Morris [aut], Paul C Boutros [aut, cre]
Maintainer: Paul C Boutros <Paul.Boutros@oicr.on.ca>

Diff between ISOpureR versions 1.0.20 dated 2016-07-23 and 1.0.21 dated 2016-08-22

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New package cooccurNet with initial version 0.1.0
Package: cooccurNet
Type: Package
Title: Co-Occurrence Network
Version: 0.1.0
Depends: R (>= 3.2.0)
Imports: seqinr, igraph, bigmemory, Matrix, data.table, foreach
Author: Yuanqiang Zou <jerrytsou2001@gmail.com>, Yousong Peng <pys2013@hnu.edu.cn> and Taijiao Jiang <taijiao@moon.ibp.ac.cn>
Maintainer: Yuanqiang Zou <jerrytsou2001@gmail.com>
Description: Read and preprocess fasta format data, and construct the co-occurrence network for downstream analyses. This R package is to construct the co-occurrence network with the algorithm developed by Du (Du 2008). It could be used to transform the data with high-dimension, such as DNA or protein sequence, into co-occurrence networks. Co-occurrence network could not only capture the co-variation pattern between variables, such as the positions in DNA or protein sequences, but also reflect the relationship between samples. Although it is originally used in DNA and protein sequences, it could be also used to other kinds of data, such as SNP.
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-22 15:13:36 UTC; Jerry
Repository: CRAN
Date/Publication: 2016-08-22 20:43:40

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Package autoimage updated to version 0.3.1 with previous version 0.3.0 dated 2016-08-13

Title: Display Multiple Images with Scaled Colors
Description: Functions for displaying (multiple) images with scaled colors, possibly with projected coordinates and for an irregular grid.
Author: Joshua French
Maintainer: Joshua French <joshua.french@ucdenver.edu>

Diff between autoimage versions 0.3.0 dated 2016-08-13 and 0.3.1 dated 2016-08-22

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Package timelineS updated to version 0.1.1 with previous version 0.1.0 dated 2016-08-16

Title: Timeline and Time Duration-Related Tools
Description: An easy tool for plotting annotated timelines, grouped timelines, and exploratory graphics (boxplot/histogram/density plot/scatter plot/line plot). Filter, summarize date data by duration and convert to calendar units.
Author: Dahee Lee [aut, cre], Dustin Tingley [aut]
Maintainer: Dahee Lee <dhlee99@gmail.com>

Diff between timelineS versions 0.1.0 dated 2016-08-16 and 0.1.1 dated 2016-08-22

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Package sdcTable updated to version 0.21.6 with previous version 0.21.5 dated 2016-05-20

Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in tabular data such as primary and secondary cell suppression are covered in this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@statistik.gv.at>

Diff between sdcTable versions 0.21.5 dated 2016-05-20 and 0.21.6 dated 2016-08-22

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Package robCompositions updated to version 2.0.2 with previous version 2.0.0 dated 2016-02-08

Title: Robust Estimation for Compositional Data
Description: Methods for analysis of compositional data including robust methods, imputation, methods to replace rounded zeros, (robust) outlier detection for compositional data, (robust) principal component analysis for compositional data, (robust) factor analysis for compositional data, (robust) discriminant analysis for compositional data (Fisher rule), robust regression with compositional predictors and (robust) Anderson-Darling normality tests for compositional data as well as popular log-ratio transformations (addLR, cenLR, isomLR, and their inverse transformations). In addition, visualisation and diagnostic tools are implemented as well as high and low-level plot functions for the ternary diagram.
Author: Matthias Templ, Karel Hron, Peter Filzmoser
Maintainer: Matthias Templ <templ@tuwien.ac.at>

Diff between robCompositions versions 2.0.0 dated 2016-02-08 and 2.0.2 dated 2016-08-22

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New package supervisedPRIM with initial version 1.0.1
Package: supervisedPRIM
Title: Supervised Classification Learning and Prediction using Patient Rules Induction Method (PRIM)
Version: 1.0.1
Date: 2016-08-22
Authors@R: person("David", "Shaub", email = "davidshaub@gmx.com", role = c("aut", "cre"))
Description: The Patient Rules Induction Method (PRIM) is typically used for "bump hunting" data mining to identify regions with abnormally high concentrations of data with large or small values. This package extends this methodology so that it can be applied to binary classification problems and used for prediction.
Depends: R (>= 3.1.1), stats, prim (>= 1.0.16)
Suggests: kernlab, testthat
License: GPL-3
URL: https://github.com/dashaub/supervisedPRIM
BugReports: https://github.com/dashaub/supervisedPRIM/issues
LazyData: true
RoxygenNote: 5.0.1
ByteCompile: true
NeedsCompilation: no
Packaged: 2016-08-22 02:29:24 UTC; david
Author: David Shaub [aut, cre]
Maintainer: David Shaub <davidshaub@gmx.com>
Repository: CRAN
Date/Publication: 2016-08-22 10:00:23

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Package PredictTestbench updated to version 1.1.1 with previous version 1.0.2 dated 2016-06-04

Title: Test Bench for Comparison of Data Prediction Models
Description: Provides a Testbench for comparison of prediction models. This package is inspired from 'imputeTestbench' package <https://cran.r-project.org/package=imputeTestbench>. It compares prediction models with reference to RMSE, MAE or MAPE parameters. It allows to add new proposed methods to test bench and to compare with other methods. The function 'prediction_append()' allows to add multiple numbers of methods to the existing methods available in test bench. One/two step ahead prediction is also possible in the testbench.
Author: Neeraj Bokde
Maintainer: Neeraj Bokde <neerajdhanraj@gmail.com>

Diff between PredictTestbench versions 1.0.2 dated 2016-06-04 and 1.1.1 dated 2016-08-22

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New package SSRA with initial version 0.1-0
Package: SSRA
Type: Package
Title: Sakai Sequential Relation Analysis
Version: 0.1-0
Date: 2016-08-22
Authors@R: c(person(given="Takuya", family="Yanagida", email="takuya.yanagida@univie.ac.at", role=c("cre","aut")), person(given="Keiko", family="Sakai",email="keiko.sakai@@oit.ac.jp", role="aut"))
Author: Takuya Yanagida [cre, aut], Keiko Sakai [aut]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Description: Takeya Semantic Structure Analysis (TSSA) and Sakai Sequential Relation Analysis (SSRA) for polytomous items for examining whether each pair of items has a sequential or equal relation. Package includes functions for generating a sequential relation table and a treegram to visualize sequential or equal relations between pairs of items.
License: GPL-3
LazyLoad: yes
LazyData: true
Imports: shape, stringr
Depends: R (>= 3.2.0)
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-22 01:25:19 UTC; Takuya
Repository: CRAN
Date/Publication: 2016-08-22 10:00:17

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Package fdasrvf updated to version 1.6.2 with previous version 1.6.1 dated 2016-04-22

Title: Elastic Functional Data Analysis
Description: Functions to support functional data analysis using the square root velocity framework.
Author: J. Derek Tucker <jdtuck@sandia.gov>
Maintainer: J. Derek Tucker <jdtuck@sandia.gov>

Diff between fdasrvf versions 1.6.1 dated 2016-04-22 and 1.6.2 dated 2016-08-22

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New package kzfs with initial version 1.0.0.12
Package: kzfs
Title: Multi-Scale Motions Separation with Kolmogorov-Zurbenko Periodogram Signals
Version: 1.0.0.12
Authors@R: c(person("Ming", "Luo", email = "ml226662@gmail.com", role = c("aut", "cre")), person("Igor", "Zurbenko", email = "IZurbenko@albany.edu", role = "aut"))
Description: Separation of wave motions in different scales and directions based on Kolmogorov-Zurbenko 2D periodograms and directional periodograms.
Depends: R (>= 3.2.2)
License: GPL (>= 2)
LazyData: true
Imports: kzft, methods, digest
RoxygenNote: 5.0.1
Suggests: polynom
NeedsCompilation: yes
Packaged: 2016-08-22 04:40:36 UTC; Ming Luo
Author: Ming Luo [aut, cre], Igor Zurbenko [aut]
Maintainer: Ming Luo <ml226662@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-22 10:00:21

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Sun, 21 Aug 2016

New package indelmiss with initial version 1.0.7
Package: indelmiss
Type: Package
Title: Insertion Deletion Analysis While Accounting for Possible Missing Data
Version: 1.0.7
Date: 2016-08-21
Author: Utkarsh J. Dang and G. Brian Golding
Maintainer: Utkarsh J. Dang <udang@binghamton.edu>
Description: Genome-wide gene insertion and deletion rates can be modelled in a maximum likelihood framework with the additional flexibility of modelling potential missing data using the models included within. These models simultaneously estimate insertion and deletion (indel) rates of gene families and proportions of "missing" data for (multiple) taxa of interest. The likelihood framework is utilized for parameter estimation. A phylogenetic tree of the taxa and gene presence/absence patterns (with data ordered by the tips of the tree) are required. For more details, see Utkarsh J. Dang, Alison M. Devault, Tatum D. Mortimer, Caitlin S. Pepperell, Hendrik N. Poinar, G. Brian Golding (2016). Gene insertion deletion analysis while accounting for possible missing data. Genetics (accepted).
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.2), ape (>= 3.2), numDeriv (>= 2012.9.1), phangorn (>= 1.99.13)
LinkingTo: Rcpp
Suggests: testthat
Depends: R (>= 2.10)
LazyData: true
NeedsCompilation: yes
Packaged: 2016-08-21 19:54:08 UTC; owner
Repository: CRAN
Date/Publication: 2016-08-22 01:59:09

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Package shinyjs updated to version 0.7 with previous version 0.6 dated 2016-04-25

Title: Perform Common JavaScript Operations in Shiny Apps using Plain R Code
Description: Perform common JavaScript operations in Shiny applications without having to know any JavaScript. Examples include: hiding an element, disabling an input, resetting an input back to its original value, delaying code execution by a few seconds, and many more useful functions.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>

Diff between shinyjs versions 0.6 dated 2016-04-25 and 0.7 dated 2016-08-21

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New package zebu with initial version 0.1.0
Package: zebu
Type: Package
Title: Local Association Measures
Version: 0.1.0
Date: 2016-08-21
Authors@R: c( person("Olivier M. F.", "Martin", email = "olivmrtn@gmail.com", role = c("aut", "cre")), person("Michel", "Ducher", email = "michel.ducher@chu-lyon.fr", role = "aut"))
Author: Olivier M. F. Martin [aut, cre], Michel Ducher [aut]
Maintainer: Olivier M. F. Martin <olivmrtn@gmail.com>
Description: Implements the estimation of local (and global) association measures: Ducher's Z, pointwise mutual information and normalized pointwise mutual information. The significance of local (and global) association is accessed using p-values estimated by permutations. Finally, using local association subgroup analysis, it identifies if the association between variables is dependent on the value of another variable.
URL: http://github.com/olivmrtn/zebu
BugReports: https://github.com/olivmrtn/zebu/issues
Depends: R (>= 3.2.0)
License: GPL-3
LazyData: true
Imports: ggplot2 (>= 2.0.0), reshape2 (>= 1.4.0), pbapply (>= 1.1.0), plyr (>= 1.8.0), parallel (>= 3.2.0)
Suggests: knitr, rmarkdown, devtools
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-21 19:33:43 UTC; oliviermartin
Repository: CRAN
Date/Publication: 2016-08-21 22:05:55

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Package ph2bye updated to version 0.1.4 with previous version 0.1.3 dated 2016-08-09

Title: Phase II Clinical Trial Design Using Bayesian Methods
Description: Calculate the Bayesian posterior/predictive probability and determine the sample size and stopping boundaries for single-arm Phase II design.
Author: Yalin Zhu, Rui Qin
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>

Diff between ph2bye versions 0.1.3 dated 2016-08-09 and 0.1.4 dated 2016-08-21

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New package ph2mult with initial version 0.1.0
Package: ph2mult
Type: Package
Title: Phase II Clinical Trial Design for Multinomial Endpoints
Version: 0.1.0
Author: Yalin Zhu, Rui Qin
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>
Description: Provide multinomial design methods under intersection-union test (IUT) and union-intersection test (UIT) scheme for Phase II trial. The design types include : Minimax (minimize the maximum sample size), Optimal (minimize the expected sample size), Admissible (minimize the Bayesian risk) and Maxpower (maximize the exact power level).
License: GPL (>= 2)
LazyData: TRUE
Imports: clinfun, graphics, stats
Suggests: gsDesign, survival
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-21 19:39:13 UTC; yalin.zhu
Repository: CRAN
Date/Publication: 2016-08-21 22:07:30

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Package interplot updated to version 0.1.3 with previous version 0.1.2.1 dated 2016-03-24

Title: Plot the Effects of Variables in Interaction Terms
Description: Plots the conditional coefficients ("marginal effects") of variables included in multiplicative interaction terms.
Author: Frederick Solt [aut], Yue Hu [aut, cre], Brenton Kenkel [ctb]
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>

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New package PDM with initial version 0.1
Package: PDM
Type: Package
Title: Photogrammetric Distances Measurer
Version: 0.1
Date: 2016-08-20
Author: J.F. Palomeque-Gonzalez and M. San-Juan
Maintainer: J.F. Palomeque-Gonzalez <jfpalomeque.gonzalez@gmail.com>
Depends: R (>= 3.1.0), jpeg
Description: Measures real distances in pictures. With PDM() function, you can choose one '*.jpg' file, select the measure in mm of scale, starting and and finishing point in the graphical scale, the name of the measure, and starting and and finishing point of the measures. After, ask the user for a new measure.
License: GPL
LazyData: TRUE
NeedsCompilation: no
Packaged: 2016-08-21 16:14:01 UTC; juan
Repository: CRAN
Date/Publication: 2016-08-21 18:33:03

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New package OSMscale with initial version 0.2.9
Package: OSMscale
Title: Add a Scale Bar to 'OpenStreetMap' Plots
Version: 0.2.9
Date: 2016-08-21
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Description: Functionality to handle and project lat-long coordinates, easily download background maps and add a correct scale bar to 'OpenStreetMap' plots in any map projection.
Imports: OpenStreetMap, berryFunctions (>= 1.11.0), sp
URL: https://github.com/brry/OSMscale
License: GPL-3
Encoding: UTF-8
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-21 15:31:07 UTC; berry
Repository: CRAN
Date/Publication: 2016-08-21 18:33:01

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Package OAIHarvester updated to version 0.2-1 with previous version 0.2-0 dated 2015-12-20

Title: Harvest Metadata Using OAI-PMH v2.0
Description: Harvest metadata using the Open Archives Initiative Protocol for Metadata Harvesting (OAI-PMH) version 2.0.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package irtDemo updated to version 0.1.2 with previous version 0.1.1 dated 2016-06-16

Title: Item Response Theory Demo Collection
Description: Includes a collection of shiny applications to demonstrate or to explore fundamental item response theory (IRT) concepts such as estimation, scoring, and multidimensional IRT models.
Author: Metin Bulus [aut,cre] Wes Bonifay [aut,cre]
Maintainer: Metin Bulus <bulusmetin@gmail.com>

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Package iprior updated to version 0.6.2 with previous version 0.6.1 dated 2016-08-19

Title: Linear Regression using I-Priors
Description: Provides methods to perform and analyse I-prior regression models. Estimation is mainly done via an EM algorithm, but there is flexibility in using any optimiser.
Author: Haziq Jamil [aut, cre]
Maintainer: Haziq Jamil <haziq.jamil@gmail.com>

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Package matchingMarkets updated to version 0.3-1 with previous version 0.2-1 dated 2016-01-30

Title: Analysis of Stable Matchings
Description: Implements structural estimators to correct for the sample selection bias from observed outcomes in matching markets. This includes one-sided matching of agents into groups as well as two-sided matching of students to schools. The package also contains algorithms to find stable matchings in the three most common matching problems: the stable roommates problem, the college admissions problem, and the house allocation problem.
Author: Thilo Klein
Maintainer: Thilo Klein <thilo@klein.uk>

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Package vows updated to version 0.5 with previous version 0.4 dated 2015-02-12

Title: Voxelwise Semiparametrics
Description: Parametric and semiparametric inference for massively parallel models, i.e., a large number of models with common design matrix, as often occurs with brain imaging data.
Author: Philip Reiss, Yin-Hsiu Chen, Lei Huang, Lan Huo, Ruixin Tan, and Rong Jiao
Maintainer: Philip Reiss <phil.reiss@nyumc.org>

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Package miniCRAN updated to version 0.2.7 with previous version 0.2.6 dated 2016-07-13

Title: Create a Mini Version of CRAN Containing Only Selected Packages
Description: Makes it possible to create an internally consistent repository consisting of selected packages from CRAN-like repositories. The user specifies a set of desired packages, and miniCRAN recursively reads the dependency tree for these packages, then downloads only this subset. The user can then install packages from this repository directly, rather than from CRAN. This is useful in production settings, e.g. server behind a firewall, or remote locations with slow broadband access.
Author: Revolution Analytics [aut], Andrie de Vries [aut, cre], Alex Chubaty [ctb]
Maintainer: Andrie de Vries <adevries@microsoft.com>

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Package AzureML updated to version 0.2.13 with previous version 0.2.12 dated 2016-07-13

Title: Interface with Azure Machine Learning Datasets, Experiments and Web Services
Description: Functions and datasets to support Azure Machine Learning. This allows you to interact with datasets, as well as publish and consume R functions as API services.
Author: Andrie de Vries [aut, cre], Microsoft Corporation [cph], Revolution Analytics [cph] (Code adapted from the foreach package)
Maintainer: Andrie de Vries <adevries@microsoft.com>

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Package MCMCpack updated to version 1.3-7 with previous version 1.3-6 dated 2016-04-15

Title: Markov Chain Monte Carlo (MCMC) Package
Description: Contains functions to perform Bayesian inference using posterior simulation for a number of statistical models. Most simulation is done in compiled C++ written in the Scythe Statistical Library Version 1.0.3. All models return coda mcmc objects that can then be summarized using the coda package. Some useful utility functions such as density functions, pseudo-random number generators for statistical distributions, a general purpose Metropolis sampling algorithm, and tools for visualization are provided.
Author: Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park
Maintainer: Jong Hee Park <jongheepark@snu.ac.kr>

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Package captr updated to version 0.2.0 with previous version 0.1.5 dated 2016-02-28

Title: Client for the Captricity API
Description: Get text from images of text using Captricity Optical Character Recognition (OCR) API. Captricity allows you to get text from handwritten forms --- think surveys --- and other structured paper documents. And it can output data in form a delimited file keeping field information intact. For more information, read https://shreddr.captricity.com/developer/overview/.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>

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New package bikeshare14 with initial version 0.1.0
Package: bikeshare14
Title: Bay Area Bike Share Trips in 2014
Version: 0.1.0
Authors@R: c( person("Arunkumar", "Srinivasan", email="arunkumar.sriniv@gmail.com", role=c("aut", "cre")) )
Maintainer: Arunkumar Srinivasan <arunkumar.sriniv@gmail.com>
Description: Anonymised Bay Area bike share trip data for the year 2014. Also contains additional metadata on stations and weather.
License: CC0
LazyData: true
Depends: R (>= 2.10)
Suggests: data.table
URL: http://github.com/arunsrinivasan/bikeshare14
BugReports: http://github.com/arunsrinivasan/bikeshare14
NeedsCompilation: no
Packaged: 2016-08-20 23:44:51 UTC; asrinivasan
Author: Arunkumar Srinivasan [aut, cre]
Repository: CRAN
Date/Publication: 2016-08-21 10:55:54

More information about bikeshare14 at CRAN
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Sat, 20 Aug 2016

Package RcppEigen updated to version 0.3.2.9.0 with previous version 0.3.2.8.1 dated 2016-03-01

Title: 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library
Description: R and 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library (currently version 3.2.9). Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Douglas Bates, Dirk Eddelbuettel, Romain Francois, and Yixuan Qiu; the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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More information about RcppEigen at CRAN
Permanent link

Package stacomirtools updated to version 0.5.0 with previous version 0.3 dated 2013-01-07

Title: ODBC Connection Class for Package stacomiR
Description: S4 class wrappers for ODBC connection.
Author: Cedric Briand [aut, cre]
Maintainer: Cedric Briand <cedric.briand00@gmail.com>

Diff between stacomirtools versions 0.3 dated 2013-01-07 and 0.5.0 dated 2016-08-20

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Permanent link

Package Rquake updated to version 2.4-0 with previous version 2.3-1 dated 2015-04-27

Title: Seismic Hypocenter Determination
Description: Hypocenter estimation and analysis of seismic data collected continuously, or in trigger mode. The functions organize other functions from RSEIS and GEOmap to help researchers pick, locate, and store hypocenters for detailed seismic investigation.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>

Diff between Rquake versions 2.3-1 dated 2015-04-27 and 2.4-0 dated 2016-08-20

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Permanent link

Package ClustVarLV updated to version 1.5.0 with previous version 1.4.1 dated 2015-09-08

Title: Clustering of Variables Around Latent Variables
Description: Functions for the clustering of variables around Latent Variables. Each cluster of variables, which may be defined as a local or directional cluster, is associated with a latent variable. External variables measured on the same observations or/and additional information on the variables can be taken into account. A "noise" cluster or sparse latent variables can also de defined.
Author: Evelyne Vigneau [aut, cre], Mingkun Chen [ctb]
Maintainer: Evelyne Vigneau <evelyne.vigneau@oniris-nantes.fr>

Diff between ClustVarLV versions 1.4.1 dated 2015-09-08 and 1.5.0 dated 2016-08-20

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Permanent link

Package RSEIS updated to version 3.6-1 with previous version 3.5-2 dated 2015-11-09

Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>

Diff between RSEIS versions 3.5-2 dated 2015-11-09 and 3.6-1 dated 2016-08-20

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More information about RSEIS at CRAN
Permanent link

Package earth updated to version 4.4.5 with previous version 4.4.4 dated 2016-01-08

Title: Multivariate Adaptive Regression Splines
Description: Build regression models using the techniques in Friedman's papers "Fast MARS" and "Multivariate Adaptive Regression Splines". (The term "MARS" is trademarked and thus not used in the name of the package.)
Author: Stephen Milborrow. Derived from mda:mars by Trevor Hastie and Rob Tibshirani. Uses Alan Miller's Fortran utilities with Thomas Lumley's leaps wrapper.
Maintainer: Stephen Milborrow <milbo@sonic.net>

Diff between earth versions 4.4.4 dated 2016-01-08 and 4.4.5 dated 2016-08-20

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More information about earth at CRAN
Permanent link

Package VarfromPDB updated to version 2.1.9 with previous version 2.0.5 dated 2016-02-11

Title: Capture the Genes and Variants Related to a Genetic Disease from Public Databases and PubMed
Description: Captures and compiles the genes and variants related to a disease, a phenotype or a clinical feature based on the public databases including HPO (Human Phenotype Ontology, <http://human-phenotype-ontology.github.io/about.html>), Orphanet <http://www.orpha.net/consor/cgi-bin/index.php>, OMIM (Online Mendelian Inheritance in Man, <http://www.omim.org>), ClinVar <http://www.ncbi.nlm.nih.gov/clinvar>, and UniProt (Universal Protein Resource, <http://www.uniprot.org>) and PubMed abstracts. HPO provides a standardized vocabulary of phenotypic abnormalities encountered in human disease. HPO currently contains approximately 11,000 terms and over 115,000 annotations to hereditary diseases. Orphanet is the reference portal for information on rare diseases and orphan drugs, whose aim is to help improve the diagnosis, care and treatment of patients with rare diseases. OMIM is a continuously updated catalog of human genes and genetic disorders and traits, with particular focus on the molecular relationship between genetic variation and phenotypic expression. ClinVar is a freely accessible, public archive of reports of the relationships among human variations and phenotypes, with supporting evidence. UniProt focuses on amino acid altering variants imported from Ensembl Variation databases. For Homo sapiens, the variants including human polymorphisms and disease mutations in the UniProt are manually curated from UniProtKB/Swiss-Prot. Additionally, PubMed provides the primary and latest source of the information. Text mining was employed to capture the information from PubMed abstracts.
Author: Zongfu Cao
Maintainer: Zongfu Cao <caozongfu@gmail.com>

Diff between VarfromPDB versions 2.0.5 dated 2016-02-11 and 2.1.9 dated 2016-08-20

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More information about VarfromPDB at CRAN
Permanent link

Package RVAideMemoire updated to version 0.9-60 with previous version 0.9-57 dated 2016-07-14

Title: Diverse Basic Statistical and Graphical Functions
Description: Contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé <mx.herve@gmail.com>

Diff between RVAideMemoire versions 0.9-57 dated 2016-07-14 and 0.9-60 dated 2016-08-20

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Permanent link

New package rpostgis with initial version 1.0.0
Package: rpostgis
Version: 1.0.0
Date: 2016-08-20
Title: R Interface to a 'PostGIS' Database
Description: Provides additional functions to the 'RPostgreSQL' package to interface R with a 'PostGIS'-enabled database, as well as convenient wrappers to common 'PostgreSQL' queries.
Authors@R: c( person("Mathieu", "Basille", email = "basille@ufl.edu", role = c("aut")), person("David", "Bucklin", email = "dbucklin@ufl.edu", role = c("aut", "cre")) )
Depends: R (>= 3.3.0), RPostgreSQL, DBI
Imports: methods, raster, rgeos, sp, stats
Suggests: rgdal, wkb
License: GPL (>= 3)
LazyData: true
URL: https://github.com/mablab/rpostgis
BugReports: https://github.com/mablab/rpostgis/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-20 14:11:06 UTC; david
Author: Mathieu Basille [aut], David Bucklin [aut, cre]
Maintainer: David Bucklin <dbucklin@ufl.edu>
Repository: CRAN
Date/Publication: 2016-08-20 16:37:17

More information about rpostgis at CRAN
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Package NMI updated to version 2.0 with previous version 1.0 dated 2016-08-19

Title: Normalized Mutual Information of Community Structure in Network
Description: Calculates the normalized mutual information (NMI) of two community structures in network analysis.
Author: Tianhao Wu [aut, cre]
Maintainer: Tianhao Wu <tianhao.wu@yale.edu>

Diff between NMI versions 1.0 dated 2016-08-19 and 2.0 dated 2016-08-20

 DESCRIPTION |    6 +++---
 MD5         |    4 ++--
 R/NMI.R     |    8 ++++----
 3 files changed, 9 insertions(+), 9 deletions(-)

More information about NMI at CRAN
Permanent link

New package predictionInterval with initial version 1.0.0
Package: predictionInterval
Type: Package
Title: Prediction Interval Functions for Assessing Replication Study Results
Version: 1.0.0
Date: 2016-08-19
Author: David Stanley
Maintainer: David Stanley <dstanley@uoguelph.ca>
Description: A common problem faced by journal reviewers and authors is the question of whether the results of a replication study are consistent with the original published study. One solution to this problem is to examine the effect size from the original study and generate the range of effect sizes that could reasonably be obtained (due to random sampling) in a replication attempt (i.e., calculate a prediction interval). This package has functions that calculate the prediction interval for the correlation (i.e., r), standardized mean difference (i.e., d-value), and mean.
Imports: ggplot2, MBESS, MASS, stats, pbapply
License: MIT License + file LICENSE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-20 12:29:54 UTC; stanley
Repository: CRAN
Date/Publication: 2016-08-20 15:39:24

More information about predictionInterval at CRAN
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Package censReg updated to version 0.5-22 with previous version 0.5-20 dated 2013-08-20

Title: Censored Regression (Tobit) Models
Description: Estimation of censored regression (Tobit) models with cross-section and panel data.
Author: Arne Henningsen <arne.henningsen@gmail.com>
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>

Diff between censReg versions 0.5-20 dated 2013-08-20 and 0.5-22 dated 2016-08-20

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Package aemo updated to version 0.2.0 with previous version 0.1.0 dated 2014-06-21

Title: Download and Process AEMO Price and Demand Data
Description: Download and process real time trading prices and demand data freely provided by the Australian Energy Market Operator (AEMO). Note that this includes a sample data set.
Author: Imanuel Costigan [aut, cre], Australian Energy Market Operator [cph]
Maintainer: Imanuel Costigan <i.costigan@me.com>

Diff between aemo versions 0.1.0 dated 2014-06-21 and 0.2.0 dated 2016-08-20

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Package mgcv updated to version 1.8-14 with previous version 1.8-13 dated 2016-07-21

Title: Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness Estimation
Description: GAMs, GAMMs and other generalized ridge regression with multiple smoothing parameter estimation by GCV, REML or UBRE/AIC. Includes a gam() function, a wide variety of smoothers, JAGS support and distributions beyond the exponential family.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>

Diff between mgcv versions 1.8-13 dated 2016-07-21 and 1.8-14 dated 2016-08-20

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Package Rborist updated to version 0.1-3 with previous version 0.1-2 dated 2016-08-17

Title: Extensible, Parallelizable Implementation of the Random Forest Algorithm
Description: Scalable decision tree training and prediction.
Author: Mark Seligman
Maintainer: Mark Seligman <mseligman@suiji.org>

Diff between Rborist versions 0.1-2 dated 2016-08-17 and 0.1-3 dated 2016-08-20

 DESCRIPTION |    8 ++++----
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Package pch updated to version 1.2 with previous version 1.1 dated 2016-02-18

Title: Piecewise Constant Hazards Models for Censored and Truncated Data
Description: Using piecewise constant hazards models is a very flexible approach for the analysis of survival data. The time line is divided into sub-intervals; for each interval, a different hazard is estimated using Poisson regression.
Author: Paolo Frumento
Maintainer: Paolo Frumento <paolo.frumento@ki.se>

Diff between pch versions 1.1 dated 2016-02-18 and 1.2 dated 2016-08-20

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Package ggghost updated to version 0.2.1 with previous version 0.2.0 dated 2016-08-18

Title: Capture the Spirit of Your 'ggplot2' Calls
Description: Creates a reproducible 'ggplot2' object by storing the data and calls.
Author: Jonathan Carroll [aut, cre]
Maintainer: Jonathan Carroll <rpkg@jcarroll.com.au>

Diff between ggghost versions 0.2.0 dated 2016-08-18 and 0.2.1 dated 2016-08-20

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Package datastepr updated to version 0.0.2 with previous version 0.0.1 dated 2015-06-06

Title: An Implementation of a SAS-Style Data Step
Description: Based on a SAS data step. This allows for row-wise dynamic building of data, iteratively importing slices of existing dataframes, conducting analyses, and exporting to a results frame. This is particularly useful for differential or time-series analyses, which are often not well suited to vector- based operations.
Author: Brandon Taylor
Maintainer: Brandon Taylor <brandon.taylor221@gmail.com>

Diff between datastepr versions 0.0.1 dated 2015-06-06 and 0.0.2 dated 2016-08-20

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Package boxoffice updated to version 0.1.1 with previous version 0.1.0 dated 2016-08-03

Title: Downloads Box Office Information for Given Dates (How Much Each Movie Earned in Theaters)
Description: Download daily box office information (how much each movie earned in theaters) using data from either Box Office Mojo (<http://www.boxofficemojo.com/>) or The Numbers (<http://www.the-numbers.com/>).
Author: Jacob Kaplan [aut, cre]
Maintainer: Jacob Kaplan <jacobkap@sas.upenn.edu>

Diff between boxoffice versions 0.1.0 dated 2016-08-03 and 0.1.1 dated 2016-08-20

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New package ctqr with initial version 1.0
Package: ctqr
Type: Package
Title: Censored and Truncated Quantile Regression
Version: 1.0
Date: 2016-08-19
Author: Paolo Frumento
Maintainer: Paolo Frumento <paolo.frumento@ki.se>
Description: Estimation of quantile regression models for survival data.
Depends: survival, pch (>= 1.2)
Imports: stats
Suggests: car, lmtest
License: GPL-2
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-19 20:45:07 UTC; paofru
Repository: CRAN
Date/Publication: 2016-08-20 10:31:34

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