Author: Diethelm Wuertz and Yohan Chalabi
Title: Rmetrics - Financial Time Series Objects
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Diff between timeSeries versions 280.78 dated 2008-10-27 and 290.79 dated 2008-12-04
DESCRIPTION | 16 +++++++++------- R/time.R | 5 +++-- 2 files changed, 12 insertions(+), 9 deletions(-)
More information about timeSeries at CRAN
Path: /cran/updated | permanent link
Author: Søren Højsgaard
Diff between gRbase versions 0.6.0 dated 2008-10-13 and 0.6.4 dated 2008-12-04
More information about gRbase at CRAN
Title: A package for graphical modelling in R
Description: This package defines S3-classes gmData (graphical meta data), gModel (graphical model). Several other graphical modelling packages rely on these fundamental constructs. gRbase illustrates how hierarchical log-linear models (hllm) may be implemented.
gRbase-0.6.0/gRbase/man/DATA-cad1.Rd |only
gRbase-0.6.0/gRbase/man/graph-operations.Rd |only
gRbase-0.6.4/gRbase/ChangeLog | 22 +++
gRbase-0.6.4/gRbase/DESCRIPTION | 6
gRbase-0.6.4/gRbase/INDEX | 8 -
gRbase-0.6.4/gRbase/R/GraphSH2.R | 31 ----
gRbase-0.6.4/gRbase/R/Graphsh-mcs-moral-rip.R | 18 +-
gRbase-0.6.4/gRbase/R/Graphsh-querygSH2.R | 178 +++++++++++++++-----------
gRbase-0.6.4/gRbase/R/formulae.R | 58 --------
gRbase-0.6.4/gRbase/R/hllm.R | 34 ++++
gRbase-0.6.4/gRbase/R/processFormula.R |only
gRbase-0.6.4/gRbase/R/processFormula2.R |only
gRbase-0.6.4/gRbase/R/setopsR.R | 7 +
gRbase-0.6.4/gRbase/R/utilities.R |only
gRbase-0.6.4/gRbase/R/utility.R | 3
gRbase-0.6.4/gRbase/data/breastcancer.RData |only
gRbase-0.6.4/gRbase/data/carcassall.txt |only
gRbase-0.6.4/gRbase/inst/doc/gRbase.pdf |binary
gRbase-0.6.4/gRbase/man/DATA-breastcancer.Rd |only
gRbase-0.6.4/gRbase/man/DATA-cad.Rd |only
gRbase-0.6.4/gRbase/man/DATA-carcass.Rd | 45 ++++--
gRbase-0.6.4/gRbase/man/gRbase-internal.Rd | 3
gRbase-0.6.4/gRbase/man/gRbase-utilities.Rd | 2
gRbase-0.6.4/gRbase/man/graph-operations1.Rd |only
gRbase-0.6.4/gRbase/man/graph-operations2.Rd |only
gRbase-0.6.4/gRbase/man/newUG.Rd | 60 +++++---
gRbase-0.6.4/gRbase/man/querygraph.Rd | 13 -
gRbase-0.6.4/gRbase/src/Makevars |only
28 files changed, 279 insertions(+), 209 deletions(-)
Path: /cran/updated | permanent link
Author: Søren Højsgaard
Diff between gRain versions 0.4.0 dated 2008-10-28 and 0.4.1 dated 2008-12-04
More information about gRain at CRAN
Title: Graphical Independence Networks
Description: A package for probability propagation in graphical independence networks, also known as probabilistic expert systems (which includes Bayesian networks as a special case).
ChangeLog | 7 +++++++
DESCRIPTION | 4 ++--
R/gmInstance.R | 2 +-
inst/doc/gRain-intro.pdf |binary
4 files changed, 10 insertions(+), 3 deletions(-)
Path: /cran/updated | permanent link
Author: Karsten Tabelow
Diff between dti versions 0.5-4 dated 2008-05-21 and 0.6-0 dated 2008-12-04
More information about dti at CRAN
Title: DTI Analysis
Description: Diffusion Weighted Imaging is a Magnetic Resonance Imaging
modality, that measures diffusion of water in tissues like the human brain.
The package contains R-functions to process diffusion-weighted data in the
context of the diffusion tensor model (DTI). This includes the calculation
of anisotropy measures and, most important, the implementation of our structural
adaptive smoothing algorithm as described in K. Tabelow, J. Polzehl, V. Spokoiny,
and H.U. Voss, Diffusion Tensor Imaging: Structural Adaptive Smoothing,
Neuroimage 39(4), 1763-1773 (2008).
dti-0.5-4/dti/R/awsvar.r |only
dti-0.5-4/dti/R/propagation.r |only
dti-0.5-4/dti/man/dti.smooth.Rd |only
dti-0.5-4/dti/man/dtiData-class.Rd |only
dti-0.5-4/dti/man/dtiData.Rd |only
dti-0.5-4/dti/man/dtiIndices-class.Rd |only
dti-0.5-4/dti/man/dtiIndices.Rd |only
dti-0.5-4/dti/man/dtiTensor-class.Rd |only
dti-0.5-4/dti/man/dtiTensor.Rd |only
dti-0.5-4/dti/man/medinria2tensor.Rd |only
dti-0.5-4/dti/man/plot.Rd |only
dti-0.5-4/dti/man/print.Rd |only
dti-0.5-4/dti/man/summary.Rd |only
dti-0.5-4/dti/man/tensor2medinria.Rd |only
dti-0.5-4/dti/src/dtinraws.f |only
dti-0.5-4/dti/src/nlrdti.f |only
dti-0.5-4/dti/src/riemann.f |only
dti-0.6-0/dti/DESCRIPTION | 8
dti-0.6-0/dti/HISTORY | 10
dti-0.6-0/dti/NAMESPACE | 7
dti-0.6-0/dti/R/Classes.r | 25
dti-0.6-0/dti/R/aws.r | 256 +------
dti-0.6-0/dti/R/aws2.r | 188 +++--
dti-0.6-0/dti/R/dti.r | 1039 +++++++++++++++++++++++++++++---
dti-0.6-0/dti/R/misc.r | 69 +-
dti-0.6-0/dti/R/varest.r |only
dti-0.6-0/dti/README | 59 +
dti-0.6-0/dti/demo/dti_art.r | 254 ++-----
dti-0.6-0/dti/inst/rcode |only
dti-0.6-0/dti/man/dti-class.Rd | 113 ++-
dti-0.6-0/dti/man/dti-package.Rd |only
dti-0.6-0/dti/man/dti.smooth-methods.Rd |only
dti-0.6-0/dti/man/dtiIndices-methods.Rd |only
dti-0.6-0/dti/man/dtiTensor-methods.Rd |only
dti-0.6-0/dti/man/extract-methods.Rd |only
dti-0.6-0/dti/man/medinria.Rd |only
dti-0.6-0/dti/man/plot-methods.Rd |only
dti-0.6-0/dti/man/print-methods.Rd |only
dti-0.6-0/dti/man/readDWIdata.Rd |only
dti-0.6-0/dti/man/sdpar-methods.Rd |only
dti-0.6-0/dti/man/show-methods.Rd |only
dti-0.6-0/dti/man/show3d-methods.Rd |only
dti-0.6-0/dti/man/summary-methods.Rd |only
dti-0.6-0/dti/src/aniso.f | 381 ++++++-----
dti-0.6-0/dti/src/awsvar.f | 233 +++++--
dti-0.6-0/dti/src/dtinraw2.f | 588 ++++++------------
dti-0.6-0/dti/src/misc.f | 124 +++
dti-0.6-0/dti/src/nlrdtirg.f | 129 +--
dti-0.6-0/dti/src/rice.f |only
49 files changed, 2148 insertions(+), 1335 deletions(-)
Path: /cran/updated | permanent link
Author: Susanne Gammelgaard Bottcher
Diff between deal versions 1.2-30 dated 2007-04-20 and 1.2-31 dated 2008-12-04
More information about deal at CRAN
Title: Learning Bayesian Networks with Mixed Variables
Description: Bayesian networks with continuous and/or discrete variables can be learned and compared from data.
deal-1.2-30/deal/CHANGES.txt |only
deal-1.2-31/deal/CHANGELOG |only
deal-1.2-31/deal/DESCRIPTION | 8 ++++----
deal-1.2-31/deal/R/autosearch.R | 6 +++---
deal-1.2-31/deal/R/heuristic.R | 6 +++---
deal-1.2-31/deal/R/jointdisc.R | 9 ++++++---
deal-1.2-31/deal/man/autosearch.Rd | 8 +++++---
deal-1.2-31/deal/man/deal-internal.Rd | 6 +++---
deal-1.2-31/deal/man/drawnetwork.Rd | 8 +++++---
deal-1.2-31/deal/man/genlatex.Rd | 30 +++++++++++++++---------------
deal-1.2-31/deal/man/insert.Rd | 8 ++++----
deal-1.2-31/deal/man/jointprior.Rd | 12 ++++++------
deal-1.2-31/deal/man/learn.Rd | 12 ++++++------
deal-1.2-31/deal/man/makesimprob.Rd | 8 ++++----
deal-1.2-31/deal/man/maketrylist.Rd | 8 ++++----
deal-1.2-31/deal/man/network.Rd | 8 ++++----
deal-1.2-31/deal/man/networkfamily.Rd | 8 ++++----
deal-1.2-31/deal/man/node.Rd | 8 ++++----
deal-1.2-31/deal/man/numbermixed.Rd | 12 ++++++------
deal-1.2-31/deal/man/nwfsort.Rd | 7 ++++---
deal-1.2-31/deal/man/nwfunique.Rd | 8 ++++----
deal-1.2-31/deal/man/perturb.Rd | 8 ++++----
deal-1.2-31/deal/man/prob.Rd | 8 ++++----
deal-1.2-31/deal/man/readnet.Rd | 3 ++-
deal-1.2-31/deal/man/rnetwork.Rd | 8 ++++----
deal-1.2-31/deal/man/score.Rd | 11 +++++++----
26 files changed, 115 insertions(+), 103 deletions(-)
Path: /cran/updated | permanent link
Author: Dirk Eddelbuettel
Diff between RQuantLib versions 0.2.9 dated 2008-08-11 and 0.2.10 dated 2008-12-04
More information about RQuantLib at CRAN
Title: R interface to the QuantLib library
Description: The RQuantLib package makes selected parts of QuantLib
visible to the R user. Currently some basic option pricing
functions are included, as well as fixed-income functions that
can be used for interest rate curve construction and Bermuda
swaption pricing. Further software contributions are welcome.
The QuantLib project aims to provide a comprehensive software
framework for quantitative finance. The goal is to provide a
standard open source library for quantitative analysis,
modeling, trading, and risk management of financial
assets.
The Windows binary version is self-contained and does not require
a QuantLib (or Boost) installation.
RQuantLib use the Rcpp R/C++ interface class library. See the Rcpp
package on CRAN (or R-Forge) for more information on Rcpp.
Note that while RQuantLib's code is licensed under the GPL (v2 or
later), QuantLib itself is released under a somewhat less
restrictive Open Source license (see QuantLib-License.txt).
RQuantLib-0.2.10/RQuantLib/DESCRIPTION | 53 +-
RQuantLib-0.2.10/RQuantLib/INDEX | 1
RQuantLib-0.2.10/RQuantLib/configure | 676 +++++++++++----------------
RQuantLib-0.2.10/RQuantLib/configure.in | 93 ++-
RQuantLib-0.2.10/RQuantLib/configure.win | 13
RQuantLib-0.2.10/RQuantLib/inst/ChangeLog | 22
RQuantLib-0.2.10/RQuantLib/src/Makefile.win | 23
RQuantLib-0.2.10/RQuantLib/src/bermudan.cpp | 14
RQuantLib-0.2.10/RQuantLib/src/discount.cpp | 10
RQuantLib-0.2.10/RQuantLib/src/rquantlib.hpp | 13
RQuantLib-0.2.10/RQuantLib/src/utils.cpp | 6
RQuantLib-0.2.9/RQuantLib/R/RcppVersion.R |only
RQuantLib-0.2.9/RQuantLib/RcppSrc |only
RQuantLib-0.2.9/RQuantLib/man/RcppVersion.Rd |only
14 files changed, 442 insertions(+), 482 deletions(-)
Path: /cran/updated | permanent link
More information about SDaA at CRAN
Path: /cran/new | permanent link
More information about GridR at CRAN
Path: /cran/new | permanent link
Author: Korbinian Strimmer
Title: Shrinkage Discriminant Analysis
Description: This package performs linear and diagonal discriminant analysis
where the classifier is trained using Stein-type shrinkage estimators.
This approach is particularly suited for high-dimensional classification.
Diff between sda versions 1.0.1 dated 2008-11-22 and 1.0.2 dated 2008-12-04
DESCRIPTION | 8 ++--- NEWS | 15 ++++++++- R/centroids.R | 57 +++++++++++++++++++++++------------ R/predict.sda.R | 51 +++++++++++++------------------- R/sda.R | 84 +++++++++++++++++++++++++++++++++++------------------ data |only man/centroids.Rd | 33 +++++++++++++------- man/khan2001.Rd |only man/sda.Rd | 82 +++++++++++++++++++++++++-------------------------- man/sda.package.Rd | 2 - 10 files changed, 194 insertions(+), 138 deletions(-)
More information about sda at CRAN
Path: /cran/updated | permanent link
Author: Alberto Viglione
Title: Non-supervised Regional Frequency Analysis
Description: A collection of statistical tools for objective (non-supervised) applications
of the Regional Frequency Analysis methods in hydrology.
The package refers to the index-value method and, more precisely, helps the
hydrologist to: (1) regionalize the index-value; (2) form homogeneous regions
with similar growth curves; (3) fit distribution functions to the
empirical regional growth curves.
Diff between nsRFA versions 0.6-2 dated 2008-09-19 and 0.6-4 dated 2008-12-04
nsRFA-0.6-2/nsRFA/inst/doc/.build.timestamp |only nsRFA-0.6-4/nsRFA/DESCRIPTION | 6 nsRFA-0.6-4/nsRFA/R/BayesianMCMC.R | 324 ++++++++++++++++++++++- nsRFA-0.6-4/nsRFA/inst/doc/Fig1ElamirSeheult.pdf |binary nsRFA-0.6-4/nsRFA/inst/doc/MSClaio2008.pdf |binary nsRFA-0.6-4/nsRFA/inst/doc/nsRFA_ex01.pdf |binary nsRFA-0.6-4/nsRFA/inst/doc/nsRFA_ex02.pdf |binary nsRFA-0.6-4/nsRFA/man/BayesianMCMC.Rd | 4 nsRFA-0.6-4/nsRFA/man/nsRFA-package.Rd | 1 9 files changed, 321 insertions(+), 14 deletions(-)
More information about nsRFA at CRAN
Path: /cran/updated | permanent link
Author: Robert B. Gramacy
Diff between monomvn versions 1.5 dated 2008-11-13 and 1.6 dated 2008-12-04
More information about monomvn at CRAN
Title: Estimation for multivariate normal data with monotone missingness
Description: Estimation of multivariate normal data of arbitrary dimension
where the pattern of missing data is monotone. Through the use of
parsimonious/shrinkage regressions (plsr, pcr, lasso, ridge,
etc.), where standard regressions fail, the package can handle an
(almost) arbitrary amount of missing data. The current version
supports maximum likelihood inference and implementation
of a Bayesian version employing a Bayesian lasso. A fully
functional standalone interface to the Bayesian lasso
(from Park & Casella) and ridge regression with model selection
via Reversible Jump is also provided
monomvn-1.5/monomvn/INDEX |only
monomvn-1.6/monomvn/ChangeLog | 32 +
monomvn-1.6/monomvn/DESCRIPTION | 6
monomvn-1.6/monomvn/R/bmonomvn.R | 319 ++++++----------
monomvn-1.6/monomvn/R/bmonomvn.traces.R |only
monomvn-1.6/monomvn/R/default.QP.R | 178 ++++++++
monomvn-1.6/monomvn/R/monomvn.R | 4
monomvn-1.6/monomvn/R/monomvn.s3.R | 53 ++
monomvn-1.6/monomvn/R/regress.fact.R | 1
monomvn-1.6/monomvn/R/util.R | 50 ++
monomvn-1.6/monomvn/data/market.rda |only
monomvn-1.6/monomvn/data/market.test.rda |only
monomvn-1.6/monomvn/data/returns.rda |only
monomvn-1.6/monomvn/data/returns.test.rda |only
monomvn-1.6/monomvn/man/blasso.Rd | 1
monomvn-1.6/monomvn/man/bmonomvn.Rd | 102 +++--
monomvn-1.6/monomvn/man/default.QP.Rd | 30 +
monomvn-1.6/monomvn/man/monomvn-internal.Rd | 7
monomvn-1.6/monomvn/man/monomvn.Rd | 16
monomvn-1.6/monomvn/man/monomvn.solve.QP.Rd |only
monomvn-1.6/monomvn/man/returns.Rd |only
monomvn-1.6/monomvn/src/blasso.cc | 555 +++++++++++++++++++++-------
monomvn-1.6/monomvn/src/blasso.h | 76 ++-
monomvn-1.6/monomvn/src/bmonomvn.cc | 526 +++++++-------------------
monomvn-1.6/monomvn/src/bmonomvn.h | 77 ---
monomvn-1.6/monomvn/src/matrix.c | 66 +++
monomvn-1.6/monomvn/src/matrix.h | 3
monomvn-1.6/monomvn/src/ustructs.cc |only
monomvn-1.6/monomvn/src/ustructs.h |only
29 files changed, 1233 insertions(+), 869 deletions(-)
Path: /cran/updated | permanent link
Author: Venkatraman E. Seshan
Title: Clinical Trial Design and Data Analysis Functions
Description: Utilities to make your clinical collaborations easier if not fun.
Diff between clinfun versions 0.8.3 dated 2008-11-18 and 0.8.4 dated 2008-12-04
CHANGES | 7 ++++++ DESCRIPTION | 4 +-- R/pselect.R | 64 ++++++++++++++++++++++++++++++++++++++++++++++----------- man/pselect.Rd | 30 ++++++++++++++++---------- 4 files changed, 79 insertions(+), 26 deletions(-)
More information about clinfun at CRAN
Path: /cran/updated | permanent link
More information about hexbin at CRAN
Path: /cran/new | permanent link
Author: David Ardia
Diff between bayesGARCH versions 1-00.01 dated 2008-06-03 and 1-00.02 dated 2008-12-04
More information about bayesGARCH at CRAN
Title: Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
Description: This package provides the bayesGARCH function which performs the
Bayesian estimation of the GARCH(1,1) model with Student's t innovations.
DESCRIPTION | 8 ++++----
R/onload.R | 4 ++--
README | 1 +
man/addPriorConditions.Rd | 5 ++++-
man/bayesGARCH.Rd | 12 +++++++-----
man/formSmpl.Rd | 5 ++++-
6 files changed, 22 insertions(+), 13 deletions(-)
Path: /cran/updated | permanent link
Author: Vinzenz Erhardt
Title: Zero Inflated Generalized Poisson (ZIGP) regression models
Description: Adapt and analyze and compare GP, ZIP and ZIGP regression models
Diff between ZIGP versions 2.7 dated 2008-11-14 and 3.0 dated 2008-12-04
ZIGP-2.7/ZIGP/R/wald.test.r |only ZIGP-2.7/ZIGP/man/wald.test.rd |only ZIGP-3.0/ZIGP/DESCRIPTION | 6 +- ZIGP-3.0/ZIGP/NAMESPACE | 2 ZIGP-3.0/ZIGP/R/eda.od.r |only ZIGP-3.0/ZIGP/R/eda.zi.r |only ZIGP-3.0/ZIGP/R/est.zigp.r |only ZIGP-3.0/ZIGP/R/fit.zigp1.r | 2 ZIGP-3.0/ZIGP/R/gradient.r | 12 ++--- ZIGP-3.0/ZIGP/R/gradient1.r | 14 +++--- ZIGP-3.0/ZIGP/R/loglikelihood.zigp.full.r | 26 ++++++------ ZIGP-3.0/ZIGP/R/loglikelihood.zigp.r | 14 +++--- ZIGP-3.0/ZIGP/R/loglikelihood.zigp.vuong.r | 14 +++--- ZIGP-3.0/ZIGP/R/mle.zigp.full.like.r | 50 ++++++++++++------------ ZIGP-3.0/ZIGP/R/mle.zigp.r | 27 +++++++++---- ZIGP-3.0/ZIGP/R/optimized.run.r | 16 +++---- ZIGP-3.0/ZIGP/man/ZIGP-package.rd | 9 ++-- ZIGP-3.0/ZIGP/man/clarke.rd | 39 ++++++++++--------- ZIGP-3.0/ZIGP/man/eda.od.rd |only ZIGP-3.0/ZIGP/man/eda.zi.rd |only ZIGP-3.0/ZIGP/man/est.zigp.rd |only ZIGP-3.0/ZIGP/man/gradient.rd | 3 - ZIGP-3.0/ZIGP/man/loglikelihood.zigp.rd | 3 - ZIGP-3.0/ZIGP/man/mle.zigp.rd | 45 +++++++++------------- ZIGP-3.0/ZIGP/man/vuong.rd | 59 +++++++++++++++-------------- 25 files changed, 179 insertions(+), 162 deletions(-)
More information about ZIGP at CRAN
Path: /cran/updated | permanent link
Author: Dominick Samperi and Dirk Eddelbuettel
Title: Rcpp R/C++ interface library and package template
Description: R/C++ interface class library and package template.
The Rcpp library maps data types betweeen R and C++,
and includes support for R types real, integer, character,
vector, matrix, Date, datetime (i.e. POSIXct) data frame,
and function. It supports calling R functions from C++.
See the package documentation file doc/RcppAPI.pdf for more
information, including details on building binary R packages
for Windows.
Diff between Rcpp versions 0.6.1 dated 2008-11-30 and 0.6.2 dated 2008-12-04
DESCRIPTION | 6 +++--- R/RcppLdpath.R | 2 +- inst/ChangeLog | 12 +++++++++--- inst/doc/RcppAPI.pdf |binary 4 files changed, 13 insertions(+), 7 deletions(-)
More information about Rcpp at CRAN
Path: /cran/updated | permanent link
Author: David Harte
Title: Time Dependent Point Process Modelling
Description: This package fits and analyses time dependent marked point process models with an emphasis on earthquake modelling. For a more detailed introduction to the package, see the topic "PtProcess". A list of recent changes can be found in the topic "Changes".
Diff between PtProcess versions 3.1-1 dated 2008-11-18 and 3.1-2 dated 2008-12-04
DESCRIPTION | 6 +++--- data/Phuket.R |only data/Phuket.txt |only man/Changes.Rd | 4 ++++ man/Phuket.Rd |only man/mpp.Rd | 4 ++-- 6 files changed, 9 insertions(+), 5 deletions(-)
More information about PtProcess at CRAN
Path: /cran/updated | permanent link
Author: Jarrod Hadfield
Title: ML and MCMC Methods for Pedigree Reconstruction and Analysis
Description: The primary aim of MasterBayes is to use MCMC techniques to integrate over uncertainty in pedigree configurations estimated from molecular markers and phenotypic data. Emphasis is put on the marginal distribution of parameters that relate the phenotypic data to the pedigree. All simulation is done in compiled C++ for efficency.
Diff between MasterBayes versions 2.4 dated 2008-09-05 and 2.41 dated 2008-12-04
DESCRIPTION | 6 R/ErrorCheck.R | 4 R/MCMCped.R | 2 R/getXlist.R | 96 ++-- R/getsPandtP.R | 9 inst/doc/Tutorial.pdf | 1065 ++++++++++++++++++++++++-------------------------- src/SampP.cc | 12 7 files changed, 602 insertions(+), 592 deletions(-)
More information about MasterBayes at CRAN
Path: /cran/updated | permanent link
Author: Holger Froehlich
Diff between GOSim versions 1.1.5.3 dated 2008-12-01 and 1.1.5.4 dated 2008-12-04
More information about GOSim at CRAN
Title: Computation of functional similarities between GO terms and gene products; GO enrichement analysis
Description: This package implements several functions useful for
computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis
DESCRIPTION | 6
R/GOenrichment.R | 36 +
inst/doc/GOSim.pdf | 1254 +++++++++++++++++++++++++---------------------------
man/GOenrichment.Rd | 12
man/internal.Rd | 2
5 files changed, 663 insertions(+), 647 deletions(-)
Path: /cran/updated | permanent link
Author: David Ardia
Diff between DEoptim versions 1.2-1 dated 2007-09-12 and 1.3-0 dated 2008-12-04
More information about DEoptim at CRAN
Title: Differential Evolution Optimization
Description: This package provides the DEoptim function which performs
Differential Evolution Optimization (evolutionary algorithm).
CHANGES | 5 ++++
DESCRIPTION | 6 ++---
R/DEoptim.R | 57 +++++++++++++++++++++++++++++++++++++++--------------
XEmacs-21.4.20.lnk |only
man/DEoptim.Rd | 10 ++++++++-
5 files changed, 60 insertions(+), 18 deletions(-)
Path: /cran/updated | permanent link
Author: Torsten Hothorn, Peter Buhlmann, Thomas Kneib, Matthias Schmid and
Benjamin Hofner
Title: Model-Based Boosting
Description: Functional gradient descent algorithms
(boosting) for optimizing general loss functions utilizing
componentwise least squares, either of parametric linear form or
smoothing splines, or regression trees as base learners for fitting
generalized linear, additive and interaction models to potentially
high-dimensional data.
Diff between mboost versions 1.0-4 dated 2008-11-13 and 1.0-5 dated 2008-12-02
DESCRIPTION | 7 +++---- R/crossvalidation.R | 2 -- R/gamboost.R | 2 -- inst/CHANGES | 5 +++++ inst/doc/SurvivalEnsembles.pdf |binary inst/doc/mboost_illustrations.pdf |binary svn-commit.tmp |only tests/setup.Rout.save |only 8 files changed, 8 insertions(+), 8 deletions(-)
More information about mboost at CRAN
Path: /cran/updated | permanent link
Author: Franck Picard
Diff between segclust versions 0.73 dated 2008-02-14 and 0.74 dated 2008-12-01
More information about segclust at CRAN
Title: SegClust : a package for Segmentation and Segmentation/Clustering.
Description: SegClust corresponds to the implementation of the statistical model described in : Picard et al., A segmentation/clustering model for the analysis of array CGH data. Biometrics, 63(3) 2007. Segmentation functions are also available (from Picard et al. A statistical approach for array CGH data analysis. BMC Bioinformatics. 2005 Feb 11;6:27).
segclust-0.73/segclust/configure |only
segclust-0.73/segclust/src/Makevars.in |only
segclust-0.74/segclust/DESCRIPTION | 8 ++--
segclust-0.74/segclust/R/clustersegments.R | 3 +
segclust-0.74/segclust/R/segclust.R | 21 +++++++++++-
segclust-0.74/segclust/src/Makevars | 4 +-
segclust-0.74/segclust/src/Rwrappers.cc | 39 ++++++++++++++++++++++--
segclust-0.74/segclust/src/Rwrappers.h | 3 +
segclust-0.74/segclust/src/Segmentation_mean.cc | 2 +
segclust-0.74/segclust/src/Segmentation_mixt.cc | 3 +
10 files changed, 71 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Author: Hans Peter Wolf
Diff between relax versions 1.083 dated 2008-06-23 and 1.1 dated 2008-12-01
More information about relax at CRAN
Title: relax -- R Editor for Literate Analysis and lateX
Description: package relax contains some functions for report
writing, presentation, and programming: relax(), tangleR(),
weaveR(), slider(). "relax" is written in R and Tcl/Tk.
relax creates a new window (top level Tcl/Tk widget) that consists
of two text fields and some buttons and menus.
Text (chunks) and code (chunks) are inserted in the upper text field (report field).
Code chunks are evaluated by clicking on EvalRCode.
Results are shown in the lower text field (output field) and
will be transfered to the report field by pressing on Insert.
In this way you get correct reports. These reports can be
loaded again in cause of presentation, modification and result checking.
tangleR() and weaveR() implement a plain kind of tangling
and weaving. slider() is designed to define sliders for interactive
experiments in a simple way.
The syntax rules of code chunks and text chunks are defined by
the noweb system proposed by Norman Ramsey
(http://www.eecs.harvard.edu/~nr/noweb/intro.html).
For integrating jpeg graphics into the text field you need the
Tcl/Tk Img package of Jan Nijtmans
(see: http://members.chello.nl/~j.nijtmans/img.html,
http://home.kpnplanet.nl/~J.Nijtmans@kpnplanet.nl/img.html or
http://tkimg.sourceforge.net/, the package is found on
http://sourceforge.net/projects/tkimg).
If an Img version is integrated in the relax package
the license terms concerning the img package will be found in
the source file of the package, for example in: relax/src/tkimg1.3.tar.gz.
Older windows versions of relax
contain the Tcl/Tk img package, so no further installations
have to be done.
relax-1.083/relax/inst/src/tkimg1.3.tar.gz |only
relax-1.1/relax/DESCRIPTION | 20 -
relax-1.1/relax/R/relax.R | 316 ++++++++++++++++-------
relax-1.1/relax/R/slider.R | 4
relax-1.1/relax/R/tangleR.R | 55 ++--
relax-1.1/relax/R/weaveR.R | 29 ++
relax-1.1/relax/R/weaveRhtml.R | 3
relax-1.1/relax/inst/config/settings.init | 2
relax-1.1/relax/inst/config/settings.relax | 2
relax-1.1/relax/inst/lib/HOWJPEGINRELAX |only
relax-1.1/relax/inst/src/relax.rev | 394 +++++++++++++++++++++++++----
relax-1.1/relax/inst/src/webR.rev | 103 +++++--
relax-1.1/relax/man/relax.Rd | 42 +++
relax-1.1/relax/man/slider.Rd | 4
relax-1.1/relax/man/tangleR.Rd | 4
15 files changed, 777 insertions(+), 201 deletions(-)
Path: /cran/updated | permanent link
Author: Juliane Schaefer, Rainer Opgen-Rhein, and Korbinian Strimmer.
Title: Efficient Estimation of Covariance and (Partial) Correlation
Description: This package implements an analytic shrinkage approach
for inferring the covariance matrix. The estimator is statistically
highly accurate and efficient, applicable to "small n, large p" data,
and always returns a positive definite and well-conditioned matrix.
Nevertheless, this method requires only little a priori modeling and is
computationally cheap. In addition to covariance estimation the
package contains similar functions for inferring variances, correlations,
partial correlations, partial variances, and regression coefficients.
Furthermore, it provides functions for fast SVD computation, for computing
the pseudoinverse, for checking the rank and positive definiteness of a
matrix, and for the computationally fast inversion of the covariance
and correlation matrix.
Diff between corpcor versions 1.4.8 dated 2008-11-17 and 1.5.0 dated 2008-12-01
corpcor-1.4.8/corpcor/CHANGES |only corpcor-1.5.0/corpcor/DESCRIPTION | 6 - corpcor-1.5.0/corpcor/NEWS |only corpcor-1.5.0/corpcor/R/cov.shrink.R | 10 - corpcor-1.5.0/corpcor/R/mpower.R |only corpcor-1.5.0/corpcor/R/powcor.shrink.R |only corpcor-1.5.0/corpcor/R/shrink.internal.R | 141 -------------------------- corpcor-1.5.0/corpcor/man/cor2pcor.Rd | 10 - corpcor-1.5.0/corpcor/man/corpcor-internal.Rd | 3 corpcor-1.5.0/corpcor/man/corpcor.package.Rd | 2 corpcor-1.5.0/corpcor/man/cov.shrink.Rd | 28 ++--- corpcor-1.5.0/corpcor/man/fast.svd.Rd | 12 +- corpcor-1.5.0/corpcor/man/invcov.shrink.Rd | 25 ++-- corpcor-1.5.0/corpcor/man/mpower.Rd |only corpcor-1.5.0/corpcor/man/mvr.shrink.Rd | 22 ++-- corpcor-1.5.0/corpcor/man/pcor.shrink.Rd | 12 +- corpcor-1.5.0/corpcor/man/powcor.shrink.Rd |only corpcor-1.5.0/corpcor/man/pseudoinverse.Rd | 6 - corpcor-1.5.0/corpcor/man/rank.condition.Rd | 8 - corpcor-1.5.0/corpcor/man/rebuild.cov.Rd | 10 - corpcor-1.5.0/corpcor/man/smtools.Rd | 10 - corpcor-1.5.0/corpcor/man/wt.scale.Rd | 8 - 22 files changed, 85 insertions(+), 228 deletions(-)
More information about corpcor at CRAN
Path: /cran/updated | permanent link
Author: Holger Froehlich
Diff between GOSim versions 1.1.5.2 dated 2008-11-04 and 1.1.5.3 dated 2008-12-01
More information about GOSim at CRAN
Title: Computation of functional similarities between GO terms and gene products; GO enrichement analysis
Description: This package implements several functions useful for
computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis
GOSim-1.1.5.2/GOSim/inst/doc/.build.timestamp |only
GOSim-1.1.5.3/GOSim/DESCRIPTION | 6
GOSim-1.1.5.3/GOSim/NAMESPACE | 2
GOSim-1.1.5.3/GOSim/R/GOenrichment.R | 60
GOSim-1.1.5.3/GOSim/R/clusterEvaluation.R | 28
GOSim-1.1.5.3/GOSim/R/geneSimilarity.R | 3
GOSim-1.1.5.3/GOSim/inst/doc/GOSim.Rnw | 3
GOSim-1.1.5.3/GOSim/inst/doc/GOSim.pdf | 1901 ++++++++++++--------------
GOSim-1.1.5.3/GOSim/man/GOenrichment.Rd | 14
GOSim-1.1.5.3/GOSim/man/evaluateClustering.Rd | 24
GOSim-1.1.5.3/GOSim/man/setEvidenceLevel.Rd | 2
11 files changed, 1003 insertions(+), 1040 deletions(-)
Path: /cran/updated | permanent link
Author: David Ardia, Lennart F. Hoogerheide and Herman K. van Dijk
Title: Adaptive Mixture of Student-t distributions
Description: This package provides functions to perform the fitting of an
adaptive mixture of Student-t distributions to a target density through its kernel function.
The mixture approximation can then be used as the importance density
in importance sampling or as the candidate density in the Metropolis-Hastings algorithm to
obtain quantities of interest for the target density itself.
Diff between AdMit versions 1-00.02 dated 2008-06-11 and 1-00.04 dated 2008-12-01
DESCRIPTION | 11 +- R/onload.R | 3 README | 32 +++++--- demo/AdMit.R | 199 ++++++++++++++++++++++++++++++++++++++++++++++++++++-- inst/ArticleJSS.R |only inst/CITATION | 50 ++++++++++--- man/AdMit.Rd | 164 +++++++++++++++++++++++++++++++++++++++++--- man/AdMitIS.Rd | 34 +++++---- man/AdMitMH.Rd | 24 ++++-- man/Mit.Rd | 16 ++-- tests/AdMit.R | 7 + 11 files changed, 461 insertions(+), 79 deletions(-)
More information about AdMit at CRAN
Path: /cran/updated | permanent link
Author: Thomas Petzoldt
Title: Simulation of ecological (and other) dynamic systems
Description: Object oriented framework to simulate ecological (and other) dynamic systems
Diff between simecol versions 0.6 dated 2008-09-22 and 0.6-1 dated 2008-12-01
DESCRIPTION | 7 ++++--- NAMESPACE | 5 +++-- R/accessors.R | 1 + R/sim.R | 3 ++- inst/NEWS | 4 ++++ inst/doc/simecol-howtos.Rnw |only inst/doc/simecol-howtos.pdf |only inst/doc/simecol-introduction.pdf |binary man/p.constrain.Rd | 4 ++-- man/simecol-package.Rd | 10 ++++++---- 10 files changed, 22 insertions(+), 12 deletions(-)
More information about simecol at CRAN
Path: /cran/updated | permanent link
More information about rsm at CRAN
Path: /cran/new | permanent link
Author: Jun Yan
Diff between geepack versions 1.0-14 dated 2008-07-14 and 1.0-15 dated 2008-12-01
More information about geepack at CRAN
Title: Generalized Estimating Equation Package
Description: Generalized estimating equations solver for parameters in mean, scale, and correlation structures, through mean link, scale link, and correlation link. Can also handle clustered categorical responses.
ChangeLog | 9
DESCRIPTION | 4
R/geeglm.R | 602 +++++++++++++++++++++++++++++++-----------------------------
3 files changed, 325 insertions(+), 290 deletions(-)
Path: /cran/updated | permanent link
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.7.2.3 dated 2008-10-07 and 2.8.0.0 dated 2008-12-01
More information about epicalc at CRAN
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 6 +++---
R/epicalc.R | 23 +++++++++++++++--------
man/cc.rd | 2 +-
man/sortBy.rd | 20 ++++++++++++++------
4 files changed, 33 insertions(+), 18 deletions(-)
Path: /cran/updated | permanent link
Author: Peter Ruckdeschel
Title: Utilities for start-up messages
Description: Utilities for start-up messages
Diff between startupmsg versions 0.5.2 dated 2008-11-06 and 0.5.3 dated 2008-11-30
DESCRIPTION | 6 ++--- NAMESPACE | 5 ++-- R/illustration.R | 47 ++++++++++++++++++++++++++-------------------- R/mySMHandler.R |only R/startUpMessage.R | 14 ++++++++----- inst/NEWS | 10 +++++++++ man/StartupUtilities.Rd | 15 +++++++++----- man/myStartupUtilities.Rd | 3 +- 8 files changed, 64 insertions(+), 36 deletions(-)
More information about startupmsg at CRAN
Path: /cran/updated | permanent link
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.1-9 dated 2008-10-08 and 3.1-10 dated 2008-11-30
CHANGELOG |only DESCRIPTION | 6 +++--- R/mclust.R | 16 ++++++++-------- man/cdensE.Rd | 8 +++++++- man/dens.Rd | 8 ++++++-- man/emE.Rd | 2 +- man/mclust1Dplot.Rd | 5 ++++- man/mclust2Dplot.Rd | 6 ++++++ 8 files changed, 35 insertions(+), 16 deletions(-)
More information about mclust at CRAN
Path: /cran/updated | permanent link
Author: Peter Ruckdeschel, Matthias Kohl, Anja Hueller, Eleonara Feist
Title: Extensions of package distr for teaching Stochastics/Statistics
in secondary school
Description: Extensions of package distr and some additional
functionality
Diff between distrTeach versions 2.0.2 dated 2008-11-06 and 2.0.3 dated 2008-11-30
DESCRIPTION | 6 +++--- R/AllClass.R | 2 +- R/illustCLT.R | 20 +++++++++++--------- R/illustLLN.R | 4 ++-- demo/illustCLT.R | 1 + demo/illustCLT_tcl.R | 2 ++ demo/illustLLN.R | 1 + inst/NEWS | 13 +++++++++++++ man/0distrTeach-package.Rd | 8 ++++---- 9 files changed, 38 insertions(+), 19 deletions(-)
More information about distrTeach at CRAN
Path: /cran/updated | permanent link
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Estimation and Testing classes based on package distr
Description: Evaluation (S4-)classes based on package distr for
evaluating procedures (estimators/tests) at data/simulation in
a unified way.
Diff between distrTEst versions 2.0.2 dated 2008-11-06 and 2.0.3 dated 2008-11-30
DESCRIPTION | 6 +++--- R/AllClasses.R | 2 +- R/plot-methods.R | 17 ++++++++++------- demo/SimulateandEstimate.R | 1 + inst/NEWS | 11 +++++++++++ man/0distrTEst-package.Rd | 11 +++++------ 6 files changed, 31 insertions(+), 17 deletions(-)
More information about distrTEst at CRAN
Path: /cran/updated | permanent link
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Simulation classes based on package distr
Description: Simulation (S4-)classes based on package distr
Diff between distrSim versions 2.0.2 dated 2008-11-06 and 2.0.3 dated 2008-11-30
DESCRIPTION | 6 +++--- R/01.R | 4 ++-- R/plot-methods.R | 27 +++++++++++++++------------ demo/Simulate.R | 1 + inst/NEWS | 14 ++++++++++++++ man/0distrSim-package.Rd | 8 ++++---- 6 files changed, 39 insertions(+), 21 deletions(-)
More information about distrSim at CRAN
Path: /cran/updated | permanent link
Author: Matthias Kohl, Peter Ruckdeschel
Title: Object orientated implementation of probability models
Description: Object orientated implementation of probability models
based on packages 'distr' and 'distrEx'
Diff between distrMod versions 2.0.2 dated 2008-11-06 and 2.0.3 dated 2008-11-30
DESCRIPTION | 6 +++--- R/AllClass.R | 6 +++--- R/AllPlot.R | 6 +++--- R/AllShow.R | 9 +++++++-- demo/censoredPois.R | 3 +++ demo/modelExp3.R | 3 +++ inst/NEWS | 21 +++++++++++++++++++++ inst/scripts/BetaFam.R | 1 + inst/scripts/PoisFam.R | 1 + inst/scripts/censoredPois.R | 2 ++ inst/scripts/example_CvMMDE.R | 5 +++-- inst/scripts/examples2.R | 1 + inst/scripts/modelExp3.R | 1 + man/0distrMod-package.Rd | 8 ++++---- man/Confint-class.Rd | 5 ++++- 15 files changed, 60 insertions(+), 18 deletions(-)
More information about distrMod at CRAN
Path: /cran/updated | permanent link
Author: Matthias Kohl, Peter Ruckdeschel
Title: Extensions of package distr
Description: Extensions of package distr and some additional
functionality
Diff between distrEx versions 2.0.2 dated 2008-11-06 and 2.0.3 dated 2008-11-30
DESCRIPTION | 6 ++--- R/AllClass.R | 4 +-- R/AllMaskedMethods.R | 57 ++++++++++++++++++++++++++---------------------- R/AllShow.R | 16 ++++++++----- R/ContaminationSize.R | 4 +-- R/CvMDist.R | 8 +++--- R/Expectation_LebDec.R | 1 R/HellingerDist.R | 8 +++--- R/Internalfunctions.R | 5 ++-- R/KolmogorovDist.R | 21 +++++++++-------- R/Skewness.R | 6 ++--- R/TotalVarDist.R | 8 +++--- demo/Prognose.R | 1 demo/distrExUse.R | 20 ---------------- inst/NEWS | 19 ++++++++++++++++ man/0distrEx-package.Rd | 5 +--- man/Var.Rd | 9 ++++--- 17 files changed, 106 insertions(+), 92 deletions(-)
More information about distrEx at CRAN
Path: /cran/updated | permanent link
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Documentation for packages distr, distrEx, distrSim, distrTEst
Description: provides documentation in form of a common vignette to
packages distr, distrEx, distrMod, distrSim, distrTEst
Diff between distrDoc versions 2.0.2 dated 2008-11-06 and 2.0.3 dated 2008-11-30
DESCRIPTION | 6 R/distrDoc.R | 2 inst/NEWS | 13 inst/doc/distr.Rnw | 93 inst/doc/distr.pdf | 9959 ++++++++++++++++++++++------------------------- man/0distrDoc-package.Rd | 5 6 files changed, 4915 insertions(+), 5163 deletions(-)
More information about distrDoc at CRAN
Path: /cran/updated | permanent link
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Object orientated implementation of distributions
Description: Object orientated implementation of distributions
Diff between distr versions 2.0.2 dated 2008-11-06 and 2.0.3 dated 2008-11-30
DESCRIPTION | 9 +++-- R/0distrOptions.R | 3 + R/0pre270.R | 4 +- R/AllClasses.R | 9 ++--- R/ContDistribution.R | 10 ++++-- R/DiscreteDistribution.R | 36 ++++++++++++++-------- R/ExpOrdGammaOrChisq.R | 23 ++++++++------ R/LatticeDistribution.R | 3 + R/LognormalDistribution.R | 3 + R/NormalDistribution.R | 6 ++- R/UnivarLebDecDistribution.R | 2 + R/bAcDcLcDistribution.R | 55 +++++++++++++++++++++++++++++++--- R/bAffLinUnivarLebDecDistribution.R | 17 +++++++++- R/internalUtils.R | 54 ++++++++++++++++++++++++--------- R/internalUtils_LCD.R | 13 ++++++++ R/plot-methods.R | 47 ++++++++++++++++------------- R/plot-methods_LebDec.R | 22 +++++++------ demo/ComparisonFFTandRtoDPQ.R | 1 demo/ConvolutionNormalDistr.R | 1 demo/Expectation.R | 1 demo/NormApprox.R | 1 demo/StationaryRegressorDistr.R | 1 demo/destructive.R | 1 demo/nFoldConvolution.R | 1 demo/range.R | 1 inst/NEWS | 28 +++++++++++++++++ inst/doc/newDistributions.Rnw | 16 ++++++++- inst/doc/newDistributions.pdf |binary man/0distr-package.Rd | 8 ++-- man/ContDistribution-class.Rd | 2 + man/DiscreteDistribution-class.Rd | 4 +- man/UnivarLebDecDistribution-class.Rd | 3 + man/UnivariateDistribution-class.Rd | 4 +- man/internals.Rd | 8 ++++ man/options.Rd |only 35 files changed, 296 insertions(+), 101 deletions(-)
More information about distr at CRAN
Path: /cran/updated | permanent link
Author: Peter Ruckdeschel
Title: Utilities for Sweave together with TeX listings package
Description: provides utilities for defining R / Rd as
Tex-package-listings "language" and including R / Rd source
file (sniplets) copied from R-forge in its most recent version
(or another url) thereby avoiding inconsistencies between
vignette and documented source code
Diff between SweaveListingUtils versions 0.1 dated 2008-11-06 and 0.1.1 dated 2008-11-30
DESCRIPTION | 19 +++--- NAMESPACE | 4 - R/SweaveListingOptions.R | 39 +++++++++--- R/SweaveListingUtils.R | 115 ++++++++++++++++++++++++------------- R/keywordsRbyRobertDenham.R |only R/keywordsStyle.R |only inst |only man/0SweaveListingUtils-package.Rd | 91 ++++++++++++++++++++++++++--- man/SweaveListingMASK.Rd |only man/SweaveListingOptions.Rd | 71 ++++++++++++++++------ man/SweaveListingPreparations.Rd | 20 +++++- man/changeKeywordstyles.Rd |only man/copySourceFromRForge.Rd | 7 +- man/library.Rd |only man/lstinputSourceFromRForge.Rd | 12 ++- man/lstset.Rd | 11 ++- man/lstsetLanguage.Rd |only man/readSourceFromRForge.Rd | 7 +- man/setToBeDefinedPkgs.Rd |only 19 files changed, 294 insertions(+), 102 deletions(-)
More information about SweaveListingUtils at CRAN
Path: /cran/updated | permanent link
Author: Matthias Kohl
Diff between RobLox versions 0.6.0 dated 2008-09-15 and 0.6.1 dated 2008-11-30
More information about RobLox at CRAN
Title: Optimally robust influence curves for location and scale
Description: Functions for the determination of optimally robust
influence curves and estimators in case of normal location with unknown scale
DESCRIPTION | 15 +++++++--------
R/rlsOptIC_AL.R | 2 +-
R/roblox.R | 2 +-
R/rsOptIC.R | 2 +-
inst/CITATION |only
inst/NEWS |only
6 files changed, 10 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
Author: Matthias Kohl, Peter Ruckdeschel
Title: Robust Asymptotic Statistics
Description: Base S4-classes and functions for robust asymptotic
statistics.
Diff between RobAStBase versions 0.1.1 dated 2008-10-12 and 0.1.3 dated 2008-11-30
DESCRIPTION | 14 +- NAMESPACE | 5 R/AllClass.R | 9 + R/AllGeneric.R | 11 ++ R/AllPlot.R | 132 +++++++++++++++++++++----- R/bALEstimate.R | 155 ++++++++++++++++++++++++++++++ R/comparePlot.R | 139 +++++++++++++++++++++++---- R/cutoff-class.R |only R/ddPlot.R |only R/ddPlot_utils.R |only R/infoPlot.R | 228 +++++++++++++++++++++++++++++++-------------- R/kStepEstimator.R | 24 ++-- R/oneStepEstimator.R | 8 - R/outlyingPlot.R |only R/utils.R | 4 inst |only man/0RobAStBase-package.Rd |only man/ALEstimate-class.Rd | 19 +++ man/IC-class.Rd | 4 man/comparePlot.Rd | 48 +++++++++ man/cutoff-class.Rd |only man/cutoff.Rd |only man/ddPlot-methods.Rd |only man/infoPlot.Rd | 51 +++++++++- man/internals_ddPlot.Rd |only man/outlyingPlotIC.Rd |only man/plot-methods.Rd |only 27 files changed, 709 insertions(+), 142 deletions(-)
More information about RobAStBase at CRAN
Path: /cran/updated | permanent link
Author: Dominick Samperi and Dirk Eddelbuettel
Title: Rcpp R/C++ interface library and package template
Description: R/C++ interface class library and package template.
The Rcpp library maps data types betweeen R and C++,
and includes support for R types real, integer, character,
vector, matrix, Date, datetime (i.e. POSIXct) data frame,
and function. It supports calling R functions from C++.
See the package documentation file doc/RcppAPI.pdf for more
information, including details on building binary R packages
for Windows.
Diff between Rcpp versions 0.6.0 dated 2008-11-06 and 0.6.1 dated 2008-11-30
Rcpp-0.6.0/Rcpp/src/Makefile |only Rcpp-0.6.1/Rcpp/DESCRIPTION | 15 +++++---- Rcpp-0.6.1/Rcpp/NAMESPACE | 3 + Rcpp-0.6.1/Rcpp/R/RcppExample.R | 37 ++++++++++++++++++++--- Rcpp-0.6.1/Rcpp/R/RcppLdpath.R |only Rcpp-0.6.1/Rcpp/cleanup | 5 +-- Rcpp-0.6.1/Rcpp/inst/ChangeLog | 30 +++++++++++++++++++ Rcpp-0.6.1/Rcpp/inst/doc/RcppAPI.pdf |binary Rcpp-0.6.1/Rcpp/man/Rcpp-package.Rd | 55 ++++++++++++++--------------------- Rcpp-0.6.1/Rcpp/man/RcppResultSet.Rd | 13 ++++++++ Rcpp-0.6.1/Rcpp/man/RcppVector.Rd | 11 +++++++ Rcpp-0.6.1/Rcpp/src/Makefile.old |only Rcpp-0.6.1/Rcpp/src/Makefile.win | 2 - Rcpp-0.6.1/Rcpp/src/Makevars |only Rcpp-0.6.1/Rcpp/src/Rcpp.cpp | 33 ++------------------- Rcpp-0.6.1/Rcpp/src/Rcpp.h | 34 +++++++-------------- Rcpp-0.6.1/Rcpp/src/RcppExample.cpp | 41 ++++++++++++++++++++++++++ 17 files changed, 178 insertions(+), 101 deletions(-)
More information about Rcpp at CRAN
Path: /cran/updated | permanent link
Author: Matthias Kohl, Peter Ruckdeschel
Title: Implementation of random variables
Description: Implementation of random variables by means of S4 classes
and methods
Diff between RandVar versions 0.6.5 dated 2008-11-06 and 0.6.6 dated 2008-11-30
DESCRIPTION | 10 +++++----- inst/CITATION | 27 +++++++++++++++++---------- inst/NEWS |only inst/doc/RandVar.Rnw | 1 + inst/doc/RandVar.pdf |binary man/0RandVar-package.Rd | 8 ++++---- 6 files changed, 27 insertions(+), 19 deletions(-)
More information about RandVar at CRAN
Path: /cran/updated | permanent link
Author: Matthias Kohl, Peter Ruckdeschel
Title: Optimally robust estimation
Description: Optimally robust estimation in general smoothly
parameterized models using S4 classes and methods.
Diff between ROptEst versions 0.6.0 dated 2008-09-15 and 0.6.2 dated 2008-11-30
DESCRIPTION | 14 +++-- NAMESPACE | 3 - R/AllGeneric.R | 9 +++ R/cniperCont.R |only R/getAsRisk.R | 1 R/getInfRobIC_asBias.R | 1 R/getModifyIC.R | 5 +- R/getRiskIC.R | 5 +- R/leastFavorableRadius.R | 2 R/lowerCaseRadius.R | 7 +- R/optIC.R | 11 ++-- R/optRisk.R | 7 +- R/radiusMinimaxIC.R | 5 -- R/roptest.R | 2 inst/CITATION |only inst/NEWS |only inst/scripts/BinomialModel.R | 48 +++++++++++++++++++ inst/scripts/ExponentialScaleModel.R | 19 +++++++ inst/scripts/GammaModel.R | 35 +++++++++++--- inst/scripts/GumbelLocationModel.R | 61 ++++++++++++++++++++----- inst/scripts/LognormalAndNormalModel.R | 31 +++++++++++- inst/scripts/NormalLocationScaleModel.R | 32 ++++++++----- inst/scripts/NormalScaleModel.R | 28 +++++++++++ inst/scripts/PoissonModel.R | 32 +++++++++++++ inst/scripts/UnderOverShootRisk.R | 11 ++++ man/0ROptEst-package.Rd |only man/cniperCont.Rd |only man/roptest.Rd | 78 ++++++++++++++++++++++++++------ 28 files changed, 378 insertions(+), 69 deletions(-)
More information about ROptEst at CRAN
Path: /cran/updated | permanent link
Author: Ollivier TARAMASCO
Title: Hidden Markov Models simulations and estimations
Description: Discrete, univariate or multivariate gaussian, mixture of univariate or multivariate gaussian HMM functions for simulation and estimation.
Diff between RHmm versions 1.0.4 dated 2008-08-11 and 1.2.0 dated 2008-11-30
RHmm-1.0.4/RHmm/R/RHmm-New.R |only RHmm-1.0.4/RHmm/man/forwardbackward.rd |only RHmm-1.0.4/RHmm/src/alldistributions.h |only RHmm-1.0.4/RHmm/src/cbaumwelch.cpp |only RHmm-1.0.4/RHmm/src/cbaumwelch.h |only RHmm-1.0.4/RHmm/src/cbaumwelchinparam.cpp |only RHmm-1.0.4/RHmm/src/cbaumwelchinparam.h |only RHmm-1.0.4/RHmm/src/cdiscrete.cpp |only RHmm-1.0.4/RHmm/src/cdiscrete.h |only RHmm-1.0.4/RHmm/src/cdistribution.h |only RHmm-1.0.4/RHmm/src/chmm.cpp |only RHmm-1.0.4/RHmm/src/chmm.h |only RHmm-1.0.4/RHmm/src/chmmfit.cpp |only RHmm-1.0.4/RHmm/src/chmmfit.h |only RHmm-1.0.4/RHmm/src/cinparam.cpp |only RHmm-1.0.4/RHmm/src/cinparam.h |only RHmm-1.0.4/RHmm/src/cmixtmultivariatemormal.cpp |only RHmm-1.0.4/RHmm/src/cmixtmultivariatenormal.h |only RHmm-1.0.4/RHmm/src/cmixtunivariatenormal.cpp |only RHmm-1.0.4/RHmm/src/cmixtunivariatenormal.h |only RHmm-1.0.4/RHmm/src/cmultivariatenormal.h |only RHmm-1.0.4/RHmm/src/cmutivariatenormal.cpp |only RHmm-1.0.4/RHmm/src/coterror.cpp |only RHmm-1.0.4/RHmm/src/coterror.h |only RHmm-1.0.4/RHmm/src/cotmatrix.cpp |only RHmm-1.0.4/RHmm/src/cotmatrix.h |only RHmm-1.0.4/RHmm/src/cotvector.cpp |only RHmm-1.0.4/RHmm/src/cotvector.h |only RHmm-1.0.4/RHmm/src/crandomgenerator.h |only RHmm-1.0.4/RHmm/src/crutils.cpp |only RHmm-1.0.4/RHmm/src/crutils.h |only RHmm-1.0.4/RHmm/src/cunivariatenormal.cpp |only RHmm-1.0.4/RHmm/src/cunivariatenormal.h |only RHmm-1.0.4/RHmm/src/cviterbi.cpp |only RHmm-1.0.4/RHmm/src/cviterbi.h |only RHmm-1.0.4/RHmm/src/hmm.h |only RHmm-1.0.4/RHmm/src/kmeans.cpp |only RHmm-1.0.4/RHmm/src/kmeans.h |only RHmm-1.0.4/RHmm/src/multivariatenormalutil.cpp |only RHmm-1.0.4/RHmm/src/multivariatenormalutil.h |only RHmm-1.0.4/RHmm/src/otmathutil.h |only RHmm-1.0.4/RHmm/src/r_equivalents.h |only RHmm-1.0.4/RHmm/src/rhmm.cpp |only RHmm-1.0.4/RHmm/src/rhmm.h |only RHmm-1.0.4/RHmm/src/samplesutil.cpp |only RHmm-1.0.4/RHmm/src/samplesutil.h |only RHmm-1.2.0/RHmm/DESCRIPTION | 22 +- RHmm-1.2.0/RHmm/NAMESPACE | 2 RHmm-1.2.0/RHmm/R/RHmm-HyperNew.R |only RHmm-1.2.0/RHmm/R/RHmm-internals.R | 126 +++++++++---- RHmm-1.2.0/RHmm/R/RHmm.R | 218 +++++++++++++++++------- RHmm-1.2.0/RHmm/README | 10 - RHmm-1.2.0/RHmm/data/n1d_3s.RData |only RHmm-1.2.0/RHmm/data/n3d_2s.RData |only RHmm-1.2.0/RHmm/man/HMMFit.rd | 63 ++++-- RHmm-1.2.0/RHmm/man/HMMGraphicDiag.rd | 25 -- RHmm-1.2.0/RHmm/man/HMMPlotSerie.rd | 11 - RHmm-1.2.0/RHmm/man/HMMSim.rd | 9 RHmm-1.2.0/RHmm/man/asymptoticCovMat.rd |only RHmm-1.2.0/RHmm/man/data_mixture.rd | 44 ++-- RHmm-1.2.0/RHmm/man/forwardBackward.rd |only RHmm-1.2.0/RHmm/man/obs_n1d_3s.rd |only RHmm-1.2.0/RHmm/man/obs_n3d_2s.rd |only RHmm-1.2.0/RHmm/man/viterbi.rd | 10 - RHmm-1.2.0/RHmm/src/AllDistributions.h |only RHmm-1.2.0/RHmm/src/Debogage.h |only RHmm-1.2.0/RHmm/src/Hmm.h |only RHmm-1.2.0/RHmm/src/Kmeans.cpp |only RHmm-1.2.0/RHmm/src/Kmeans.h |only RHmm-1.2.0/RHmm/src/Makevars.win | 2 RHmm-1.2.0/RHmm/src/MultivariateNormalUtil.cpp |only RHmm-1.2.0/RHmm/src/MultivariateNormalUtil.h |only RHmm-1.2.0/RHmm/src/OTMathUtil.h |only RHmm-1.2.0/RHmm/src/REquivalents.h |only RHmm-1.2.0/RHmm/src/RHmm.cpp |only RHmm-1.2.0/RHmm/src/RHmm.h |only RHmm-1.2.0/RHmm/src/SamplesUtil.cpp |only RHmm-1.2.0/RHmm/src/SamplesUtil.h |only RHmm-1.2.0/RHmm/src/cBaumWelch.cpp |only RHmm-1.2.0/RHmm/src/cBaumWelch.h |only RHmm-1.2.0/RHmm/src/cBaumWelchInParam.cpp |only RHmm-1.2.0/RHmm/src/cBaumWelchInParam.h |only RHmm-1.2.0/RHmm/src/cDiscrete.cpp |only RHmm-1.2.0/RHmm/src/cDiscrete.h |only RHmm-1.2.0/RHmm/src/cDistribution.h |only RHmm-1.2.0/RHmm/src/cHmm.cpp |only RHmm-1.2.0/RHmm/src/cHmm.h |only RHmm-1.2.0/RHmm/src/cHmmFit.cpp |only RHmm-1.2.0/RHmm/src/cHmmFit.h |only RHmm-1.2.0/RHmm/src/cInParam.cpp |only RHmm-1.2.0/RHmm/src/cInParam.h |only RHmm-1.2.0/RHmm/src/cLogBaumWelch.cpp |only RHmm-1.2.0/RHmm/src/cLogBaumWelch.h |only RHmm-1.2.0/RHmm/src/cMixtMultivariateNormal.cpp |only RHmm-1.2.0/RHmm/src/cMixtMultivariateNormal.h |only RHmm-1.2.0/RHmm/src/cMixtUnivariateNormal.cpp |only RHmm-1.2.0/RHmm/src/cMixtUnivariateNormal.h |only RHmm-1.2.0/RHmm/src/cMultivariateNormal.cpp |only RHmm-1.2.0/RHmm/src/cMultivariateNormal.h |only RHmm-1.2.0/RHmm/src/cOTError.cpp |only RHmm-1.2.0/RHmm/src/cOTError.h |only RHmm-1.2.0/RHmm/src/cOTMatrix.cpp |only RHmm-1.2.0/RHmm/src/cOTMatrix.h |only RHmm-1.2.0/RHmm/src/cOTVector.cpp |only RHmm-1.2.0/RHmm/src/cOTVector.h |only RHmm-1.2.0/RHmm/src/cRUtils.cpp |only RHmm-1.2.0/RHmm/src/cRUtils.h |only RHmm-1.2.0/RHmm/src/cRandomGenerator.h |only RHmm-1.2.0/RHmm/src/cUnivariateNormal.cpp |only RHmm-1.2.0/RHmm/src/cUnivariateNormal.h |only RHmm-1.2.0/RHmm/src/cViterbi.cpp |only RHmm-1.2.0/RHmm/src/cViterbi.h |only RHmm-1.2.0/RHmm/src/logprob.cpp |only RHmm-1.2.0/RHmm/src/logprob.h |only 114 files changed, 350 insertions(+), 192 deletions(-)
More information about RHmm at CRAN
Path: /cran/updated | permanent link
Author: Matthias Kohl
Title: Miscellaneous Functions from M. Kohl
Description: Miscellaneous Functions from M. Kohl
Diff between MKmisc versions 0.1 dated 2008-09-05 and 0.3 dated 2008-11-30
DESCRIPTION | 11 ++++++----- R/pairwiseFC.R | 12 ++++++++---- R/qboxplot.R | 3 ++- inst/CITATION | 2 +- man/MKmisc-package.Rd | 11 ++++++----- man/pairwiseFC.Rd | 7 ++++--- 6 files changed, 27 insertions(+), 19 deletions(-)
More information about MKmisc at CRAN
Path: /cran/updated | permanent link
Author: Bernhard Pfaff
Title: VAR Modelling
Description: Estimation, lag selection, diagnostic testing, forecasting, causality analysis, forecast error variance decomposition and impulse response functions of VAR models and estimation of SVAR/SVEC models.
Diff between vars versions 1.4-0 dated 2008-07-11 and 1.4-1 dated 2008-11-29
vars-1.4-0/vars/inst/doc/Rplots.pdf |only vars-1.4-0/vars/inst/doc/vars.tex |only vars-1.4-1/vars/DESCRIPTION | 7 +- vars-1.4-1/vars/R/VAR.R | 3 + vars-1.4-1/vars/inst/ChangeLog | 7 ++ vars-1.4-1/vars/inst/book-ex/Rcode-1-1.R | 20 +++---- vars-1.4-1/vars/inst/book-ex/Rcode-1-2.R | 44 ++++++++--------- vars-1.4-1/vars/inst/book-ex/Rcode-1-3.R | 76 +++++++++++++++--------------- vars-1.4-1/vars/inst/book-ex/Rcode-2-10.R | 12 ++-- vars-1.4-1/vars/inst/book-ex/Rcode-2-11.R | 12 ++-- vars-1.4-1/vars/inst/book-ex/Rcode-2-2.R | 52 ++++++++++---------- vars-1.4-1/vars/inst/book-ex/Rcode-2-4.R | 6 +- vars-1.4-1/vars/inst/book-ex/Rcode-2-8.R | 56 +++++++++++----------- vars-1.4-1/vars/inst/book-ex/Rcode-2-9.R | 50 +++++++++---------- vars-1.4-1/vars/inst/book-ex/Rcode-3-1.R | 42 ++++++++-------- vars-1.4-1/vars/inst/book-ex/Rcode-3-2.R | 44 ++++++++--------- vars-1.4-1/vars/inst/book-ex/Rcode-3-3.R | 24 ++++----- vars-1.4-1/vars/inst/book-ex/Rcode-3-4.R | 18 +++---- vars-1.4-1/vars/inst/book-ex/Rcode-4-1.R | 18 +++---- vars-1.4-1/vars/inst/book-ex/Rcode-4-2.R | 28 +++++------ vars-1.4-1/vars/inst/book-ex/Rcode-4-3.R | 42 ++++++++-------- vars-1.4-1/vars/inst/book-ex/Rcode-4-4.R | 20 +++---- vars-1.4-1/vars/inst/book-ex/Rcode-5-1.R | 18 +++---- vars-1.4-1/vars/inst/book-ex/Rcode-5-2.R | 24 ++++----- vars-1.4-1/vars/inst/book-ex/Rcode-5-3.R | 24 ++++----- vars-1.4-1/vars/inst/book-ex/Rcode-5-4.R | 14 ++--- vars-1.4-1/vars/inst/book-ex/Rcode-5-5.R | 12 ++-- vars-1.4-1/vars/inst/book-ex/Rcode-6-1.R | 18 +++---- vars-1.4-1/vars/inst/book-ex/Rcode-6-2.R | 16 +++--- vars-1.4-1/vars/inst/book-ex/Rcode-6-3.R | 34 ++++++------- vars-1.4-1/vars/inst/book-ex/Rcode-7-1.R | 54 ++++++++++----------- vars-1.4-1/vars/inst/book-ex/Rcode-7-2.R | 24 ++++----- vars-1.4-1/vars/inst/book-ex/Rcode-7-3.R | 30 +++++------ vars-1.4-1/vars/inst/book-ex/Rcode-8-1.R | 26 +++++----- vars-1.4-1/vars/inst/book-ex/Rcode-8-10.R | 2 vars-1.4-1/vars/inst/book-ex/Rcode-8-11.R | 58 +++++++++++----------- vars-1.4-1/vars/inst/book-ex/Rcode-8-12.R | 12 ++-- vars-1.4-1/vars/inst/book-ex/Rcode-8-13.R | 40 +++++++-------- vars-1.4-1/vars/inst/book-ex/Rcode-8-14.R | 32 ++++++------ vars-1.4-1/vars/inst/book-ex/Rcode-8-15.R | 14 ++--- vars-1.4-1/vars/inst/book-ex/Rcode-8-16.R | 12 ++-- vars-1.4-1/vars/inst/book-ex/Rcode-8-17.R | 2 vars-1.4-1/vars/inst/book-ex/Rcode-8-2.R | 18 +++---- vars-1.4-1/vars/inst/book-ex/Rcode-8-3.R | 16 +++--- vars-1.4-1/vars/inst/book-ex/Rcode-8-4.R | 12 ++-- vars-1.4-1/vars/inst/book-ex/Rcode-8-5.R | 8 +-- vars-1.4-1/vars/inst/book-ex/Rcode-8-6.R | 8 +-- vars-1.4-1/vars/inst/book-ex/Rcode-8-7.R | 16 +++--- vars-1.4-1/vars/inst/book-ex/Rcode-8-8.R | 8 +-- vars-1.4-1/vars/inst/book-ex/Rcode-8-9.R | 38 +++++++-------- vars-1.4-1/vars/inst/book-ex/ex2.tar.gz |binary vars-1.4-1/vars/inst/doc/vars.pdf |binary 52 files changed, 591 insertions(+), 580 deletions(-)
More information about vars at CRAN
Path: /cran/updated | permanent link
Author: Bernhard Pfaff
Diff between urca versions 1.1-7 dated 2008-07-11 and 1.2-1 dated 2008-11-29
More information about urca at CRAN
Title: Unit root and cointegration tests for time series data
Description: Unit root and cointegration tests encountered in applied
econometric analysis are implemented.
urca-1.1-7/urca/inst/inst |only
urca-1.2-1/urca/DESCRIPTION | 7 +-
urca-1.2-1/urca/NAMESPACE | 3 -
urca-1.2-1/urca/R/internal.R | 1
urca-1.2-1/urca/R/methods-show.R | 2
urca-1.2-1/urca/inst/CITATION | 6 +-
urca-1.2-1/urca/inst/ChangeLog | 17 +++++-
urca-1.2-1/urca/inst/Rcmdr |only
urca-1.2-1/urca/inst/book-ex/Rcode-1-1.R | 20 +++----
urca-1.2-1/urca/inst/book-ex/Rcode-1-2.R | 44 ++++++++---------
urca-1.2-1/urca/inst/book-ex/Rcode-1-3.R | 76 +++++++++++++++---------------
urca-1.2-1/urca/inst/book-ex/Rcode-2-10.R | 12 ++--
urca-1.2-1/urca/inst/book-ex/Rcode-2-11.R | 12 ++--
urca-1.2-1/urca/inst/book-ex/Rcode-2-2.R | 52 ++++++++++----------
urca-1.2-1/urca/inst/book-ex/Rcode-2-4.R | 6 +-
urca-1.2-1/urca/inst/book-ex/Rcode-2-8.R | 56 +++++++++++-----------
urca-1.2-1/urca/inst/book-ex/Rcode-2-9.R | 50 +++++++++----------
urca-1.2-1/urca/inst/book-ex/Rcode-3-1.R | 42 ++++++++--------
urca-1.2-1/urca/inst/book-ex/Rcode-3-2.R | 44 ++++++++---------
urca-1.2-1/urca/inst/book-ex/Rcode-3-3.R | 24 ++++-----
urca-1.2-1/urca/inst/book-ex/Rcode-3-4.R | 18 +++----
urca-1.2-1/urca/inst/book-ex/Rcode-4-1.R | 18 +++----
urca-1.2-1/urca/inst/book-ex/Rcode-4-2.R | 28 +++++------
urca-1.2-1/urca/inst/book-ex/Rcode-4-3.R | 42 ++++++++--------
urca-1.2-1/urca/inst/book-ex/Rcode-4-4.R | 20 +++----
urca-1.2-1/urca/inst/book-ex/Rcode-5-1.R | 18 +++----
urca-1.2-1/urca/inst/book-ex/Rcode-5-2.R | 24 ++++-----
urca-1.2-1/urca/inst/book-ex/Rcode-5-3.R | 24 ++++-----
urca-1.2-1/urca/inst/book-ex/Rcode-5-4.R | 14 ++---
urca-1.2-1/urca/inst/book-ex/Rcode-5-5.R | 12 ++--
urca-1.2-1/urca/inst/book-ex/Rcode-6-1.R | 18 +++----
urca-1.2-1/urca/inst/book-ex/Rcode-6-2.R | 16 +++---
urca-1.2-1/urca/inst/book-ex/Rcode-6-3.R | 34 ++++++-------
urca-1.2-1/urca/inst/book-ex/Rcode-7-1.R | 54 ++++++++++-----------
urca-1.2-1/urca/inst/book-ex/Rcode-7-2.R | 24 ++++-----
urca-1.2-1/urca/inst/book-ex/Rcode-7-3.R | 30 +++++------
urca-1.2-1/urca/inst/book-ex/Rcode-8-1.R | 26 +++++-----
urca-1.2-1/urca/inst/book-ex/Rcode-8-10.R | 2
urca-1.2-1/urca/inst/book-ex/Rcode-8-11.R | 58 +++++++++++-----------
urca-1.2-1/urca/inst/book-ex/Rcode-8-12.R | 12 ++--
urca-1.2-1/urca/inst/book-ex/Rcode-8-13.R | 40 +++++++--------
urca-1.2-1/urca/inst/book-ex/Rcode-8-14.R | 32 ++++++------
urca-1.2-1/urca/inst/book-ex/Rcode-8-15.R | 14 ++---
urca-1.2-1/urca/inst/book-ex/Rcode-8-16.R | 12 ++--
urca-1.2-1/urca/inst/book-ex/Rcode-8-17.R | 2
urca-1.2-1/urca/inst/book-ex/Rcode-8-2.R | 18 +++----
urca-1.2-1/urca/inst/book-ex/Rcode-8-3.R | 16 +++---
urca-1.2-1/urca/inst/book-ex/Rcode-8-4.R | 12 ++--
urca-1.2-1/urca/inst/book-ex/Rcode-8-5.R | 8 +--
urca-1.2-1/urca/inst/book-ex/Rcode-8-6.R | 8 +--
urca-1.2-1/urca/inst/book-ex/Rcode-8-7.R | 16 +++---
urca-1.2-1/urca/inst/book-ex/Rcode-8-8.R | 8 +--
urca-1.2-1/urca/inst/book-ex/Rcode-8-9.R | 38 +++++++--------
urca-1.2-1/urca/inst/book-ex/ex2.tar.gz |binary
54 files changed, 602 insertions(+), 588 deletions(-)
Path: /cran/updated | permanent link
Author: Donghoh Kim
Diff between CVThresh versions 1.0.5 dated 2006-10-04 and 1.1.0 dated 2008-11-29
More information about CVThresh at CRAN
Title: Level-Dependent Cross-Validation Thresholding
Description: This package carries out level-dependent
cross-validation method for the selection of thresholding
value in wavelet shrinkage. This procedure is implemented
by coupling a conventional cross validation with an
imputation method due to a limitation of data length,
a power of 2. It can be easily applied to classical
leave-one-out and k-fold cross validation.
Since the procedure is computationally fast,
a level-dependent cross validation can be performed for
wavelet shrinkage of various data such as a data
with correlated errors.
DESCRIPTION | 10 +++++-----
R/CVThresh.R | 14 ++++++++------
man/cvwavelet.image.Rd | 2 +-
3 files changed, 14 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Author: David Meyer and Kurt Hornik (with contributions by Christian Buchta)
Title: Sets, Generalized Sets, and Customizable Sets.
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and
fuzzy multisets, and customizable sets.
Diff between sets versions 0.3-2 dated 2008-08-12 and 0.4 dated 2008-11-28
sets-0.3-2/sets/R/fuzzy.R |only sets-0.3-2/sets/inst/doc/.build.timestamp |only sets-0.3-2/sets/inst/doc/set.Rnw |only sets-0.3-2/sets/inst/doc/set.pdf |only sets-0.4/sets/DESCRIPTION | 6 sets-0.4/sets/NAMESPACE | 120 +++++++++++------ sets-0.4/sets/NEWS | 12 + sets-0.4/sets/R/cardinality.R | 23 ++- sets-0.4/sets/R/complement.R | 10 - sets-0.4/sets/R/converters.R | 24 ++- sets-0.4/sets/R/cset.R | 31 ++-- sets-0.4/sets/R/element.R | 2 sets-0.4/sets/R/extractors.R | 47 ++++++ sets-0.4/sets/R/fuzzyfuns.R |only sets-0.4/sets/R/fuzzylogic.R |only sets-0.4/sets/R/gset.R | 98 ++++++++------ sets-0.4/sets/R/intersection.R | 10 - sets-0.4/sets/R/labels.R | 4 sets-0.4/sets/R/mean.R |only sets-0.4/sets/R/memberships.R | 39 +++++ sets-0.4/sets/R/options.R | 4 sets-0.4/sets/R/outer.R | 10 - sets-0.4/sets/R/plot.R | 210 ++++++++++++++++++++++++++++-- sets-0.4/sets/R/product.R |only sets-0.4/sets/R/set.R | 61 +++++--- sets-0.4/sets/R/summary.R | 2 sets-0.4/sets/R/utilities.R | 63 +++++++-- sets-0.4/sets/inst/NEWS | 12 + sets-0.4/sets/inst/doc/sets.Rnw |only sets-0.4/sets/inst/doc/sets.pdf |only sets-0.4/sets/man/cset.Rd | 43 +++++- sets-0.4/sets/man/fuzzy.Rd | 11 + sets-0.4/sets/man/fuzzyfuns.Rd |only sets-0.4/sets/man/gset.Rd | 90 ++++++++++-- sets-0.4/sets/man/labels.Rd | 2 sets-0.4/sets/man/options.Rd | 18 +- sets-0.4/sets/man/outer.Rd | 14 +- sets-0.4/sets/man/plot.Rd |only sets-0.4/sets/man/set.Rd | 17 +- sets-0.4/sets/paper |only 40 files changed, 772 insertions(+), 211 deletions(-)
More information about sets at CRAN
Path: /cran/updated | permanent link
Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon
Title: graph: A package to handle graph data structures
Description: A package that implements some simple graph handling
capabilities.
Diff between graph versions 1.19.6 dated 2008-10-08 and 1.20.0 dated 2008-11-28
DESCRIPTION | 4 inst/doc/GraphClass.pdf | 6 inst/doc/clusterGraph.pdf |binary inst/doc/graph.pdf | 275 +++++++++++++++++++++---------------------- inst/doc/graphAttributes.pdf |binary 5 files changed, 145 insertions(+), 140 deletions(-)
More information about graph at CRAN
Path: /cran/updated | permanent link
Author: Sergej Potapov
Diff between TWIX versions 0.2.5 dated 2008-11-27 and 0.2.6 dated 2008-11-28
More information about TWIX at CRAN
Title: Trees WIth eXtra splits
Description: Trees with extra splits
DESCRIPTION | 8 ++++----
R/twix.R | 7 ++++---
clean.sh | 28 ++++++++++++++++++++++++----
man/Devplot.Rd | 4 ++--
man/bagg.default.Rd | 12 ++++++++----
man/bootwix.Rd | 13 +++++++++----
man/deviance.twix.Rd | 2 +-
man/export.Rd | 4 ++--
man/get.splitvar.Rd | 2 +-
man/get.tree.Rd | 2 +-
man/olives.Rd | 6 ++----
man/plot.twix.Rd | 3 +--
man/predict.twix.Rd | 2 +-
man/print.single.tree.Rd | 2 +-
man/scree.plot.Rd | 2 +-
man/trace.plot.Rd | 2 +-
man/tuneTWIX.Rd | 2 +-
man/twix.Rd | 6 +++---
18 files changed, 67 insertions(+), 40 deletions(-)
Path: /cran/updated | permanent link
Author: Vince Carey
Diff between RBGL versions 1.17.2 dated 2008-10-08 and 1.18.0 dated 2008-11-28
More information about RBGL at CRAN
Title: An interface to the BOOST graph library
Description: A fairly extensive and comprehensive interface to the graph
algorithms contained in the BOOST library.
DESCRIPTION | 4
inst/doc/RBGL.pdf | 1141 ++++++++++++++++++++++++++----------------------------
2 files changed, 571 insertions(+), 574 deletions(-)
Path: /cran/updated | permanent link
Author: John Fox
Diff between sem versions 0.9-13 dated 2008-09-22 and 0.9-14 dated 2008-11-28
More information about sem at CRAN
Title: Structural Equation Models
Description: This package contains functions for fitting general linear structural
equation models (with observed and unobserved variables) by the method of
maximum likelihood using the RAM approach, and for fitting structural equations
in observed-variable models by two-stage least squares.
DESCRIPTION | 7 ++++---
R/boot.sem.R | 4 ++--
R/sem.R | 9 ++++-----
R/summary.sem.R | 12 +++++++++++-
inst/CHANGES | 10 ++++++++++
5 files changed, 31 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
Author: John Fox
Diff between effects versions 1.0-12 dated 2008-04-06 and 2.0-0 dated 2008-11-28
More information about effects at CRAN
Title: Effect Displays for Linear, Generalized Linear, Multinomial-Logit, and Proportional-Odds Logit Models
Description:
Graphical and tabular effect displays, e.g., of interactions, for linear
generalized linear, multinomial-logit, and proportional-odds logit models.
effects-1.0-12/effects/R/effects-plots.R |only
effects-1.0-12/effects/data/Arrests.txt |only
effects-1.0-12/effects/data/Cowles.txt |only
effects-1.0-12/effects/data/Prestige.txt |only
effects-2.0-0/effects/DESCRIPTION | 15 -
effects-2.0-0/effects/NAMESPACE | 19 +-
effects-2.0-0/effects/R/effects.R |only
effects-2.0-0/effects/R/plot-summary-print-methods.R |only
effects-2.0-0/effects/R/utilities.R |only
effects-2.0-0/effects/data/BEPS.rda |only
effects-2.0-0/effects/data/WVS.rda |only
effects-2.0-0/effects/inst/CHANGES | 7
effects-2.0-0/effects/man/BEPS.Rd |only
effects-2.0-0/effects/man/WVS.Rd |only
effects-2.0-0/effects/man/effect.Rd | 167 +++++++++++--------
effects-2.0-0/effects/man/effects-deprecated.Rd |only
effects-2.0-0/effects/man/summary.effect.Rd | 160 +++++++++++-------
17 files changed, 234 insertions(+), 134 deletions(-)
Path: /cran/updated | permanent link
Author: Chunquan Li
Title: Annotation and identification of the KEGG pathways.
Description: SubpathwayMiner facilitates sub-pathway annotation and identification of metabolic pathways. It also provides annotation and identification of entire pathways.
Diff between SubpathwayMiner versions 1.0 dated 2008-11-27 and 1.1 dated 2008-11-28
DESCRIPTION | 8 ++++---- inst/doc/Rplots.pdf | 4 ++-- inst/doc/SubpathwayMiner.pdf |binary man/gotoKEGG.Rd | 4 ++-- man/plotAnn.Rd | 2 +- 5 files changed, 9 insertions(+), 9 deletions(-)
More information about SubpathwayMiner at CRAN
Path: /cran/updated | permanent link
Author: Rolf Turner
Diff between Iso versions 0.0-5 dated 2008-06-12 and 0.0-6 dated 2008-11-28
More information about Iso at CRAN
Title: Functions to perform isotonic regression.
Description: Does linear order and unimodal order isotonic regression.
DESCRIPTION | 6 +++---
INDEX | 8 ++++----
R/First.R | 3 +++
R/pava.R | 24 ++++++++++++++++--------
R/pava.sa.R | 38 +++++++++++++++++++++++++-------------
R/ufit.R | 19 +++++++++++++++----
man/pava.Rd | 43 ++++++++++++++++++++++++++++++++++++-------
man/ufit.Rd | 48 ++++++++++++++++++++++++++++--------------------
8 files changed, 130 insertions(+), 59 deletions(-)
Path: /cran/updated | permanent link
Author: Donghoh Kim
Diff between EMD versions 1.1.0 dated 2008-05-08 and 1.2.0 dated 2008-11-28
More information about EMD at CRAN
Title: Empirical Mode Decomposition and Hilbert Spectral Analysis
Description: This package carries out empirical mode decompostion and Hilbert spectral
analysis.
DESCRIPTION | 6 -
R/EMD1d.R | 32 +++++-----
R/Hilbert.R | 2
man/EMD-internal.Rd | 26 ++++----
man/cvtype.Rd | 66 ++++++++++-----------
man/emd.Rd | 134 ++++++++++++++++++++++----------------------
man/emd.pred.Rd | 52 ++++++++---------
man/emd2d.Rd | 102 ++++++++++++++++-----------------
man/emddenoise.Rd | 148 ++++++++++++++++++++++++------------------------
man/extractimf.Rd | 108 +++++++++++++++++------------------
man/extractimf2d.Rd | 102 ++++++++++++++++-----------------
man/extrema.Rd | 78 ++++++++++++-------------
man/extrema2dC.Rd | 86 ++++++++++++++--------------
man/hilbertspec.Rd | 104 +++++++++++++++++-----------------
man/imageEMD.Rd | 52 ++++++++---------
man/kospi200.Rd | 38 ++++++------
man/lena.Rd | 36 +++++------
man/lennon.Rd | 36 +++++------
man/solar.Rd | 158 ++++++++++++++++++++++++++--------------------------
man/spectrogram.Rd | 122 ++++++++++++++++++++--------------------
man/sunspot.Rd | 54 ++++++++---------
21 files changed, 771 insertions(+), 771 deletions(-)
Path: /cran/updated | permanent link
Author: Vinzenz Erhardt
Title: Generate correlated count random variables
Description: Generate high-dimensional correlated count random variables with a prespecified Pearson correlation.
Diff between corcounts versions 1.1 dated 2008-11-13 and 1.2 dated 2008-11-27
DESCRIPTION | 6 +- NAMESPACE | 2 R/modified.cvine.alg.reg.R |only R/rcounts.R | 2 R/rcounts.reg.R |only man/c2pc.Rd | 54 ++++++++++++++++++++++- man/corcounts-package.Rd | 76 +++++++++++++++++---------------- man/modified.cvine.alg.reg.Rd |only man/pc2c.Rd | 62 ++++++++++++++++++++++++++- man/rcounts.Rd | 95 ++++++++++++++++++++---------------------- man/rcounts.reg.Rd |only 11 files changed, 201 insertions(+), 96 deletions(-)
More information about corcounts at CRAN
Path: /cran/updated | permanent link
Author: Wolfgang Breymann, David Luethi
Title: A package on the generalized hyperbolic distribution and its special cases
Description: This package provides detailed functionality for working with the univariate and multivariate Generalized Hyperbolic distribution and its special cases (Hyperbolic (hyp), Normal Inverse Gaussian (NIG), Variance Gamma (VG), skewed Student-t and Gaussian distribution). Especially, it contains fitting procedures, an AIC-based model selection routine, and functions for the computation of density, quantile, probability, random variates, expected shortfall and some portfolio optimization and plotting routines as well as the likelihood ratio test. In addition, it contains the Generalized Inverse Gaussian distribution.
Diff between ghyp versions 1.4.0 dated 2008-10-29 and 1.5.0 dated 2008-11-27
ChangeLog | 20 DESCRIPTION | 6 NAMESPACE | 1 R/ghypGIG.R | 457 + R/ghypGenericMethods.R | 107 inst/doc/Generalized_Hyperbolic_Distribution.pdf | 6674 +++++++++++------------ man/ghyp-distribution.Rd | 12 man/ghyp-internal.Rd | 16 man/ghyp-mle.ghyp-classes.Rd | 1 man/ghyp-package.Rd | 5 man/gig-distribution.Rd | 22 man/scale-methods.Rd |only man/transform-extract-methods.Rd | 25 13 files changed, 3787 insertions(+), 3559 deletions(-)
More information about ghyp at CRAN
Path: /cran/updated | permanent link
Author: Sergej Potapov
Diff between TWIX versions 0.2.4 dated 2007-11-27 and 0.2.5 dated 2008-11-27
More information about TWIX at CRAN
Title: Trees WIth eXtra splits
Description: Trees with extra splits
TWIX-0.2.4/TWIX/R/Devplot.r |only
TWIX-0.2.4/TWIX/R/bagg.boottwix.r |only
TWIX-0.2.4/TWIX/R/boottwix.r |only
TWIX-0.2.4/TWIX/R/deviance.twix.r |only
TWIX-0.2.4/TWIX/R/export.r |only
TWIX-0.2.4/TWIX/R/get.splitvar.r |only
TWIX-0.2.4/TWIX/R/get.tree.r |only
TWIX-0.2.4/TWIX/R/iDevplot.R |only
TWIX-0.2.4/TWIX/R/nlogn.r |only
TWIX-0.2.4/TWIX/R/plot.twix.r |only
TWIX-0.2.4/TWIX/R/pred.value.r |only
TWIX-0.2.4/TWIX/R/predict.bootwix.r |only
TWIX-0.2.4/TWIX/R/predict_twix.R |only
TWIX-0.2.4/TWIX/R/print.padj.tree.r |only
TWIX-0.2.4/TWIX/R/print.single.tree.r |only
TWIX-0.2.4/TWIX/R/print.twix.r |only
TWIX-0.2.4/TWIX/R/sb_padj.R |only
TWIX-0.2.4/TWIX/R/sp.slave.r |only
TWIX-0.2.4/TWIX/R/splitt.r |only
TWIX-0.2.4/TWIX/R/splitt_padj.R |only
TWIX-0.2.4/TWIX/R/summary.twix.r |only
TWIX-0.2.4/TWIX/R/zzz.r |only
TWIX-0.2.4/TWIX/cleanup.sh |only
TWIX-0.2.4/TWIX/data/cancer.tsv |only
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TWIX-0.2.4/TWIX/man/sp.slave.Rd |only
TWIX-0.2.5/TWIX/DESCRIPTION | 20
TWIX-0.2.5/TWIX/NAMESPACE | 13
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TWIX-0.2.5/TWIX/R/bagg.boottwix.R |only
TWIX-0.2.5/TWIX/R/boottwix.R |only
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TWIX-0.2.5/TWIX/R/export.R |only
TWIX-0.2.5/TWIX/R/get.splitvar.R |only
TWIX-0.2.5/TWIX/R/get.tree.R |only
TWIX-0.2.5/TWIX/R/impor.R | 63 -
TWIX-0.2.5/TWIX/R/ncmaxstat.R | 188 +--
TWIX-0.2.5/TWIX/R/nlogn.R |only
TWIX-0.2.5/TWIX/R/plot.twix.R |only
TWIX-0.2.5/TWIX/R/pred.value.R |only
TWIX-0.2.5/TWIX/R/predict.boot.R |only
TWIX-0.2.5/TWIX/R/predict.bootwix.R |only
TWIX-0.2.5/TWIX/R/predict.twix.R |only
TWIX-0.2.5/TWIX/R/print.padj.tree.R |only
TWIX-0.2.5/TWIX/R/print.single.tree.R |only
TWIX-0.2.5/TWIX/R/print.twix.R |only
TWIX-0.2.5/TWIX/R/sb.padj.R |only
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TWIX-0.2.5/TWIX/R/splitt.deviance.R |only
TWIX-0.2.5/TWIX/R/splitt.padj.R |only
TWIX-0.2.5/TWIX/R/summary.twix.R |only
TWIX-0.2.5/TWIX/R/trace.plot.R | 4
TWIX-0.2.5/TWIX/R/tuneTWIX.R | 90 -
TWIX-0.2.5/TWIX/R/twix.R | 1922 ++++++++++++++-----------------
TWIX-0.2.5/TWIX/R/zzz.R |only
TWIX-0.2.5/TWIX/clean.sh |only
TWIX-0.2.5/TWIX/man/Devplot.Rd | 31
TWIX-0.2.5/TWIX/man/bagg.default.Rd | 65 -
TWIX-0.2.5/TWIX/man/bootwix.Rd | 101 -
TWIX-0.2.5/TWIX/man/deviance.twix.Rd | 10
TWIX-0.2.5/TWIX/man/export.Rd | 15
TWIX-0.2.5/TWIX/man/fullrks.Rd | 10
TWIX-0.2.5/TWIX/man/get.splitvar.Rd | 17
TWIX-0.2.5/TWIX/man/get.tree.Rd | 10
TWIX-0.2.5/TWIX/man/olives.Rd | 6
TWIX-0.2.5/TWIX/man/plot.twix.Rd | 40
TWIX-0.2.5/TWIX/man/predict.twix.Rd | 63 -
TWIX-0.2.5/TWIX/man/print.id.tree.Rd | 4
TWIX-0.2.5/TWIX/man/print.single.tree.Rd | 25
TWIX-0.2.5/TWIX/man/print.twix.Rd | 3
TWIX-0.2.5/TWIX/man/scree.plot.Rd | 12
TWIX-0.2.5/TWIX/man/splitt.Rd | 12
TWIX-0.2.5/TWIX/man/splitt_padj.Rd |only
TWIX-0.2.5/TWIX/man/trace.plot.Rd | 34
TWIX-0.2.5/TWIX/man/tuneTWIX.Rd | 22
TWIX-0.2.5/TWIX/man/twix.Rd | 115 +
TWIX-0.2.5/TWIX/src/Devleaf.c |only
TWIX-0.2.5/TWIX/src/Devleaf.h |only
TWIX-0.2.5/TWIX/src/important.c |only
TWIX-0.2.5/TWIX/src/maxstat.c |only
TWIX-0.2.5/TWIX/src/pLausen94.c |only
TWIX-0.2.5/TWIX/src/pLausen94.h |only
TWIX-0.2.5/TWIX/src/pred.c | 143 +-
TWIX-0.2.5/TWIX/src/split-sum.c | 56
TWIX-0.2.5/TWIX/src/split-sum_cr.c | 28
TWIX-0.2.5/TWIX/src/split_cat.c | 282 +++-
TWIX-0.2.5/TWIX/src/split_cross.c | 25
TWIX-0.2.5/TWIX/src/split_rule.c | 232 +++
TWIX-0.2.5/TWIX/src/tw_table.c | 153 ++
TWIX-0.2.5/TWIX/src/tw_table.h |only
TWIX-0.2.5/TWIX/src/utils.c |only
TWIX-0.2.5/TWIX/src/utils.h |only
96 files changed, 2107 insertions(+), 1707 deletions(-)
Path: /cran/updated | permanent link
Author: Julian Taylor
Diff between wgaim versions 0.1-2 dated 2008-07-15 and 0.2 dated 2008-11-27
More information about wgaim at CRAN
Title: Whole Genome Average Interval Mapping for QTL detection using mixed models
Description: This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL's in linkage maps.
DESCRIPTION | 4
R/wgaim.R | 278 +++++++++++++++++++++++++++---------------------
man/link.map.cross.Rd | 7 -
man/link.map.default.Rd |only
man/link.map.wgaim.Rd | 24 ++--
man/wgaim-internal.Rd | 6 -
6 files changed, 186 insertions(+), 133 deletions(-)
Path: /cran/updated | permanent link
Author: Robert B. Gramacy
Diff between tgp versions 2.1-5 dated 2008-10-25 and 2.1-6 dated 2008-11-27
More information about tgp at CRAN
Title: Bayesian treed Gaussian process models
Description: Bayesian nonstationary, semiparametric nonlinear regression
and design by treed Gaussian processes with jumps to the limiting
linear model (LLM). Special cases also implemented include Bayesian
linear models, CART, treed linear models, stationary separable and
isotropic Gaussian processes. Provides 1-d and 2-d plotting functions
(with projection and slice capabilities) and tree drawing, designed for
visualization of tgp-class output. Sensitivity analysis and
multi-resolution models are supported, and a limited set of experimental
design and adaptive sampling functions are also provided, including ALM,
ALC, and expected improvement.
ChangeLog | 8 +++
DESCRIPTION | 4 -
R/tgp.default.params.R | 2
demo/cat.R | 44 +++++++++++++---
demo/it.R | 129 +++++++++++++++++++++++++++++++++++++------------
src/temper.cc | 3 +
6 files changed, 149 insertions(+), 41 deletions(-)
Path: /cran/updated | permanent link
More information about lmodel2 at CRAN
Path: /cran/new | permanent link
More information about SubpathwayMiner at CRAN
Path: /cran/new | permanent link
Author: Yurii Aulchenko, Maksim Struchalin
Title: genome-wide SNP association analysis
Description: a package for genome-wide association analysis between
quantitative or binary traits and single-nucleiotide
polymorphisms (SNPs).
Diff between GenABEL versions 1.4-0 dated 2008-08-22 and 1.4-1 dated 2008-11-27
CHANGES.LOG | 902 +-- DESCRIPTION | 26 NAMESPACE | 5 R/egscore.R | 3 R/egscore.old.R |only R/hom.R | 20 R/hom.old.R |only R/ibs.R | 73 R/ibs.old.R |only R/load.gwaa.data.R | 9 R/mlreg.R | 24 R/mlreg.p.R |only R/perid.summary.R | 17 R/r2fast.R | 60 R/r2fast.old.R |only TODO | 3 inst/doc/ABEL-tutorial.pdf |12343 +++++++++++++++++++++----------------------- inst/doc/GenABEL-manual.pdf | 7509 +++++++++++++------------- man/GenABEL-package.Rd | 4 man/egscore.Rd | 6 man/egscore.old.Rd |only man/hom.Rd | 18 man/hom.old.Rd |only man/ibs.Rd | 10 man/ibs.old.Rd |only man/mlreg.Rd | 11 man/mlreg.p.Rd |only man/perid.summary.Rd | 3 man/r2fast.Rd | 6 man/r2fast.old.Rd |only src/gwaa.c | 231 src/lm_gwaa.cpp | 9 src/merge.snp.data.cpp | 242 33 files changed, 10964 insertions(+), 10570 deletions(-)
More information about GenABEL at CRAN
Path: /cran/updated | permanent link
Author: Sanjay Chaudhuri
Diff between glmc versions 0.2-1 dated 2006-12-06 and 0.2-2 dated 2008-11-26
More information about glmc at CRAN
Title: Fitting Generalized Linear Models Subject to Constraints
Description: Fits generalized linear models where the parameters are subject to linear constraints. The model is specified by giving a symbolic description of the linear predictor, a description of the error distribution, and a matrix of constraints on the parameters.
DESCRIPTION | 4 ++--
R/glmc.r | 2 +-
2 files changed, 3 insertions(+), 3 deletions(-)
Path: /cran/updated | permanent link
Author: Holger Froehlich
Diff between gene2pathway versions 1.0.3 dated 2008-11-12 and 1.0.5 dated 2008-11-26
More information about gene2pathway at CRAN
Title: Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures
Description: The package takes a list of genes and predicts to which KEGG pathway each gene maps to. This is done by looking at the InterPro domains of each gene. Each prediction is assigned a confidence score. The package also allows to predict connected component membership of genes within signaling pathways. Separate models for each organism supported by KEGG can be trained.
CITATION |only
DESCRIPTION | 6 +--
NAMESPACE | 5 ++-
R/buildTrainingSet.R | 2 -
R/gene2pathway.R | 45 ++++++++++++++++++----------
R/gene2pathway.signaltrans.R | 22 ++++++++-----
R/test.overrepresentation.R | 11 ++++--
data/classificationModelSignalTrans_hsa.rda |binary
inst/doc/gene2pathway.Rnw | 6 +--
inst/doc/gene2pathway.pdf |binary
man/ORF2Entrez.Rd | 1
man/getComponents.Rd | 2 +
man/internal.Rd | 2 -
man/retrain.Rd | 5 +++
man/retrain.signaltrans.Rd | 5 +++
man/test.overrepresentation.Rd | 5 ++-
16 files changed, 78 insertions(+), 39 deletions(-)
Path: /cran/updated | permanent link
Author: Jose L. Izquierdo
Diff between Metabonomic versions 2.1 dated 2008-11-24 and 2.2 dated 2008-11-26
More information about Metabonomic at CRAN
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis (Baseline, Normalization, Peak Detection,
PCA, PLS, Nearest Neigbourgt, Neural Network) developed to make easy this data analysis.
DESCRIPTION | 6 +++---
R/Baseline.Correction.R | 18 +++++++++---------
R/Met.delete.R | 10 +++++-----
R/Met.spectrum.2.R | 10 +++++-----
R/Met.spectrum.R | 10 +++++-----
R/Metabonomic-internal.R | 2 +-
inst |only
7 files changed, 28 insertions(+), 28 deletions(-)
Path: /cran/updated | permanent link
Author: Arnost Komarek