Title: Data Handling and Analysis in Macroecology
Description: Handling, processing, and analyzing geographic
data on species' distributions and environmental variables.
Read Vilela & Villalobos (2015) <doi:10.1111/2041-210X.12401> for details.
Author: Bruno Vilela [aut, cre] ,
Fabricio Villalobos [aut]
Maintainer: Bruno Vilela <bvilela.bv@gmail.com>
This is a re-admission after prior archival of version 5.0 dated 2023-11-23
Diff between letsR versions 5.0 dated 2023-11-23 and 6.0 dated 2026-03-27
letsR-5.0/letsR/R/getcode.R |only letsR-5.0/letsR/R/getnames.R |only letsR-5.0/letsR/R/letsR-package.R |only letsR-5.0/letsR/R/lets_iucn.R |only letsR-5.0/letsR/R/lets_iucn_habitats.R |only letsR-5.0/letsR/R/lets_iucn_historic.R |only letsR-5.0/letsR/man/figures |only letsR-5.0/letsR/man/lets.iucn.Rd |only letsR-5.0/letsR/man/lets.iucn.ha.Rd |only letsR-5.0/letsR/man/lets.iucn.his.Rd |only letsR-5.0/letsR/tests/testthat/test-lets_iucn.R |only letsR-5.0/letsR/tests/testthat/test-lets_iucn_ha.R |only letsR-5.0/letsR/tests/testthat/test-lets_iucn_his.R |only letsR-6.0/letsR/DESCRIPTION | 16 letsR-6.0/letsR/MD5 | 193 letsR-6.0/letsR/NAMESPACE | 18 letsR-6.0/letsR/R/Data_helps.R | 147 letsR-6.0/letsR/R/PresenceAbsence-class.R | 117 letsR-6.0/letsR/R/defensive_functions.R | 58 letsR-6.0/letsR/R/letsR_PACKAGE.R |only letsR-6.0/letsR/R/lets_attrcells.R |only letsR-6.0/letsR/R/lets_attrpam.R |only letsR-6.0/letsR/R/lets_distmat.R | 108 letsR-6.0/letsR/R/lets_envcells.R |only letsR-6.0/letsR/R/lets_envpam.R |only letsR-6.0/letsR/R/lets_field.R | 264 letsR-6.0/letsR/R/lets_iucncont.R | 133 letsR-6.0/letsR/R/lets_maplizer.R | 84 letsR-6.0/letsR/R/lets_maplizer_attr.R |only letsR-6.0/letsR/R/lets_maplizer_env.R |only letsR-6.0/letsR/R/lets_pamcrop.R | 149 letsR-6.0/letsR/R/lets_presab.R | 547 - letsR-6.0/letsR/R/lets_presab_grid.R | 300 letsR-6.0/letsR/R/lets_presab_grid_points.R |only letsR-6.0/letsR/R/lets_presab_points.R | 320 letsR-6.0/letsR/R/lets_save_load.R | 116 letsR-6.0/letsR/R/lets_shpfilter.R | 24 letsR-6.0/letsR/R/lets_summaryze_cells.R |only letsR-6.0/letsR/R/plot_PresenceAbsence.R | 149 letsR-6.0/letsR/R/plot_attpam.R |only letsR-6.0/letsR/R/plot_envpam.R |only letsR-6.0/letsR/R/removecells.R | 2 letsR-6.0/letsR/R/unicas.R | 64 letsR-6.0/letsR/README.md | 100 letsR-6.0/letsR/build/vignette.rds |binary letsR-6.0/letsR/data/prec.rda |only letsR-6.0/letsR/data/temp.rda |binary letsR-6.0/letsR/inst/doc/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based.R | 224 letsR-6.0/letsR/inst/doc/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based.Rmd | 400 letsR-6.0/letsR/inst/doc/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based.html | 1225 +- letsR-6.0/letsR/inst/doc/Adding-variables-to-a-presenceabsence-object.R | 204 letsR-6.0/letsR/inst/doc/Adding-variables-to-a-presenceabsence-object.html | 4999 +++++----- letsR-6.0/letsR/inst/doc/Cross-mapping-biodiversity-metrics-Phyllomedusa.R |only letsR-6.0/letsR/inst/doc/Cross-mapping-biodiversity-metrics-Phyllomedusa.Rmd |only letsR-6.0/letsR/inst/doc/Cross-mapping-biodiversity-metrics-Phyllomedusa.html |only letsR-6.0/letsR/inst/doc/Mapping-species-richness-in-attribute-space.R |only letsR-6.0/letsR/inst/doc/Mapping-species-richness-in-attribute-space.Rmd |only letsR-6.0/letsR/inst/doc/Mapping-species-richness-in-attribute-space.html |only letsR-6.0/letsR/inst/doc/Mapping-species-richness-in-environmental-space.R |only letsR-6.0/letsR/inst/doc/Mapping-species-richness-in-environmental-space.Rmd |only letsR-6.0/letsR/inst/doc/Mapping-species-richness-in-environmental-space.html |only letsR-6.0/letsR/inst/doc/cropping-and-subseting-your-presence-absence-matrix.R | 56 letsR-6.0/letsR/inst/doc/cropping-and-subseting-your-presence-absence-matrix.html | 795 - letsR-6.0/letsR/inst/doc/mapping-species-traits.R | 85 letsR-6.0/letsR/inst/doc/mapping-species-traits.Rmd | 1 letsR-6.0/letsR/inst/doc/mapping-species-traits.html | 862 - letsR-6.0/letsR/inst/doc/save-load-presenceabsence.R | 29 letsR-6.0/letsR/inst/doc/save-load-presenceabsence.Rmd | 5 letsR-6.0/letsR/inst/doc/save-load-presenceabsence.html | 744 - letsR-6.0/letsR/inst/doc/species-level-macroecological-analysis.R | 182 letsR-6.0/letsR/inst/doc/species-level-macroecological-analysis.Rmd | 300 letsR-6.0/letsR/inst/doc/species-level-macroecological-analysis.html | 4163 ++++---- letsR-6.0/letsR/man/IUCN.Rd | 24 letsR-6.0/letsR/man/PAM.Rd | 12 letsR-6.0/letsR/man/Phyllomedusa.Rd | 22 letsR-6.0/letsR/man/PresenceAbsence.Rd | 3 letsR-6.0/letsR/man/lets.attrcells.Rd |only letsR-6.0/letsR/man/lets.attrpam.Rd |only letsR-6.0/letsR/man/lets.envcells.Rd |only letsR-6.0/letsR/man/lets.envpam.Rd |only letsR-6.0/letsR/man/lets.iucncont.Rd | 3 letsR-6.0/letsR/man/lets.maplizer.Rd | 6 letsR-6.0/letsR/man/lets.maplizer.attr.Rd |only letsR-6.0/letsR/man/lets.maplizer.env.Rd |only letsR-6.0/letsR/man/lets.pamcrop.Rd | 6 letsR-6.0/letsR/man/lets.plot.attrcells.Rd |only letsR-6.0/letsR/man/lets.plot.attrpam.Rd |only letsR-6.0/letsR/man/lets.plot.envcells.Rd |only letsR-6.0/letsR/man/lets.plot.envpam.Rd |only letsR-6.0/letsR/man/lets.presab.Rd | 23 letsR-6.0/letsR/man/lets.presab.birds.Rd | 8 letsR-6.0/letsR/man/lets.presab.grid.Rd | 10 letsR-6.0/letsR/man/lets.presab.grid.points.Rd |only letsR-6.0/letsR/man/lets.presab.points.Rd | 12 letsR-6.0/letsR/man/lets.shFilter.Rd | 17 letsR-6.0/letsR/man/lets.summaryze.cells.Rd |only letsR-6.0/letsR/man/letsR-package.Rd | 7 letsR-6.0/letsR/man/prec.Rd |only letsR-6.0/letsR/man/temp.Rd | 43 letsR-6.0/letsR/man/wrld_simpl.Rd | 40 letsR-6.0/letsR/tests/testthat/Rplots.pdf |binary letsR-6.0/letsR/tests/testthat/Rplots7.pdf |only letsR-6.0/letsR/tests/testthat/Rplots8.pdf |only letsR-6.0/letsR/tests/testthat/test-TimLucas.r | 170 letsR-6.0/letsR/tests/testthat/test-lets_addvar.R | 13 letsR-6.0/letsR/tests/testthat/test-lets_attrcells.R |only letsR-6.0/letsR/tests/testthat/test-lets_attrpam.R |only letsR-6.0/letsR/tests/testthat/test-lets_classvar.R | 13 letsR-6.0/letsR/tests/testthat/test-lets_envcells.R |only letsR-6.0/letsR/tests/testthat/test-lets_envpam.R |only letsR-6.0/letsR/tests/testthat/test-lets_maplizer_attr.R |only letsR-6.0/letsR/tests/testthat/test-lets_maplizer_env.R |only letsR-6.0/letsR/tests/testthat/test-lets_presab.R | 350 letsR-6.0/letsR/tests/testthat/test-lets_presab_grid_points.R |only letsR-6.0/letsR/tests/testthat/test-lets_save_load.R |only letsR-6.0/letsR/tests/testthat/test-lets_shfilter.R |only letsR-6.0/letsR/tests/testthat/test-lets_summarizer.R | 13 letsR-6.0/letsR/tests/testthat/test-lets_summaryze_cells.R |only letsR-6.0/letsR/tests/testthat/test-plot_attrpam.R |only letsR-6.0/letsR/tests/testthat/test-plot_envpam.R |only letsR-6.0/letsR/tests/testthat/test-printplotsummary.R | 42 letsR-6.0/letsR/tests/testthat/test-removecells.R | 36 letsR-6.0/letsR/tests/testthat/test-test_maplizer.R |only letsR-6.0/letsR/vignettes/A-guide-to-transform-species-distributions-into-a-presence-absence-matrix-based.Rmd | 400 letsR-6.0/letsR/vignettes/Cross-mapping-biodiversity-metrics-Phyllomedusa.Rmd |only letsR-6.0/letsR/vignettes/Mapping-species-richness-in-attribute-space.Rmd |only letsR-6.0/letsR/vignettes/Mapping-species-richness-in-environmental-space.Rmd |only letsR-6.0/letsR/vignettes/mapping-species-traits.Rmd | 1 letsR-6.0/letsR/vignettes/save-load-presenceabsence.Rmd | 5 letsR-6.0/letsR/vignettes/species-level-macroecological-analysis.Rmd | 300 130 files changed, 9486 insertions(+), 9276 deletions(-)
Title: Clustering of Sites with Species Data
Description: Clustering algorithm developed for use with plot inventories of species. It groups plots by subsets of diagnostic species rather than overall species composition. There is an unsupervised and a supervised mode, the latter accepting suggestions for species with greater weight and cluster medoids.
Author: Sebastian Schmidtlein [aut, cre] ,
Jason Collison [aut],
Robin Pfannendoerfer [aut],
Lubomir Tichy [ctb]
Maintainer: Sebastian Schmidtlein <schmidtlein@kit.edu>
This is a re-admission after prior archival of version 3.5 dated 2026-03-08
Diff between isopam versions 3.5 dated 2026-03-08 and 3.6 dated 2026-03-27
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Title: Estimators and Algorithms for Heavy-Tailed Distributions
Description: Implements the estimators and algorithms described in Chapters 8 and 9 of the book "The Fundamentals of Heavy Tails: Properties, Emergence, and Estimation" by Nair et al. (2022, ISBN:9781009053730). These include the Hill estimator, Moments estimator, Pickands estimator, Peaks-over-Threshold (POT) method, Power-law fit, and the Double Bootstrap algorithm.
Author: Farid Rohan [aut, cre]
Maintainer: Farid Rohan <frohan@ur.rochester.edu>
Diff between heavytails versions 0.1.1 dated 2025-12-01 and 0.2.0 dated 2026-03-27
heavytails-0.1.1/heavytails/R/helpers.r |only heavytails-0.1.1/heavytails/R/plfit.r |only heavytails-0.1.1/heavytails/R/pot_estimator.r |only heavytails-0.2.0/heavytails/DESCRIPTION | 9 - heavytails-0.2.0/heavytails/LICENSE | 4 heavytails-0.2.0/heavytails/MD5 | 67 +++++++--- heavytails-0.2.0/heavytails/NAMESPACE | 24 +++ heavytails-0.2.0/heavytails/NEWS.md |only heavytails-0.2.0/heavytails/R/doublebootstrap.R | 64 ++++----- heavytails-0.2.0/heavytails/R/helpers.R |only heavytails-0.2.0/heavytails/R/hill_estimator.R | 6 heavytails-0.2.0/heavytails/R/hill_plot.R |only heavytails-0.2.0/heavytails/R/imports.R | 3 heavytails-0.2.0/heavytails/R/ks_gof.R |only heavytails-0.2.0/heavytails/R/ks_xmin.R |only heavytails-0.2.0/heavytails/R/lr_test_pareto.R |only heavytails-0.2.0/heavytails/R/mle_pareto.R |only heavytails-0.2.0/heavytails/R/moments_plot.R |only heavytails-0.2.0/heavytails/R/pareto_utils.R |only heavytails-0.2.0/heavytails/R/pickands_plot.R |only heavytails-0.2.0/heavytails/R/plfit.R |only heavytails-0.2.0/heavytails/R/pot_estimator.R |only heavytails-0.2.0/heavytails/R/qq_pareto.R |only heavytails-0.2.0/heavytails/R/rank_plot.R |only heavytails-0.2.0/heavytails/R/wls_pareto.R |only heavytails-0.2.0/heavytails/README.md |only heavytails-0.2.0/heavytails/build/partial.rdb |binary heavytails-0.2.0/heavytails/man/db_estimators.Rd |only heavytails-0.2.0/heavytails/man/dpareto.Rd |only heavytails-0.2.0/heavytails/man/find_db_diffs.Rd |only heavytails-0.2.0/heavytails/man/gpd_lg_likelihood.Rd | 12 - heavytails-0.2.0/heavytails/man/hill_estimator.Rd | 2 heavytails-0.2.0/heavytails/man/hill_plot.Rd |only heavytails-0.2.0/heavytails/man/ks_gof.Rd |only heavytails-0.2.0/heavytails/man/ks_xmin.Rd |only heavytails-0.2.0/heavytails/man/lr_test_pareto.Rd |only heavytails-0.2.0/heavytails/man/mle_pareto.Rd |only heavytails-0.2.0/heavytails/man/moments_plot.Rd |only heavytails-0.2.0/heavytails/man/pareto_cdf.Rd |only heavytails-0.2.0/heavytails/man/pickands_plot.Rd |only heavytails-0.2.0/heavytails/man/plfit.Rd | 2 heavytails-0.2.0/heavytails/man/pot_estimator.Rd | 2 heavytails-0.2.0/heavytails/man/qq_pareto.Rd |only heavytails-0.2.0/heavytails/man/rank_plot.Rd |only heavytails-0.2.0/heavytails/man/rpareto.Rd |only heavytails-0.2.0/heavytails/man/wls_pareto.Rd |only heavytails-0.2.0/heavytails/tests/testthat/test-hill_plot.R |only heavytails-0.2.0/heavytails/tests/testthat/test-ks_gof.R |only heavytails-0.2.0/heavytails/tests/testthat/test-ks_xmin.R |only heavytails-0.2.0/heavytails/tests/testthat/test-lr_test_pareto.R |only heavytails-0.2.0/heavytails/tests/testthat/test-mle_pareto.R |only heavytails-0.2.0/heavytails/tests/testthat/test-moments_plot.R |only heavytails-0.2.0/heavytails/tests/testthat/test-pareto_utils.R |only heavytails-0.2.0/heavytails/tests/testthat/test-pickands_plot.R |only heavytails-0.2.0/heavytails/tests/testthat/test-qq_pareto.R |only heavytails-0.2.0/heavytails/tests/testthat/test-rank_plot.R |only heavytails-0.2.0/heavytails/tests/testthat/test-wls_pareto.R |only 57 files changed, 124 insertions(+), 71 deletions(-)
Title: Generalized Synthetic Control Method
Description: Conducts causal inference with interactive fixed-effect models. It
imputes counterfactuals for each treated unit using control group
information based on a linear interactive fixed effects model that
incorporates unit-specific intercepts interacted with time-varying
coefficients. This method generalizes the synthetic control method to the
case of multiple treated units and variable treatment periods, and improves
efficiency and interpretability. See Xu (2017)
<doi:10.1017/pan.2016.2> for details.
Author: Yiqing Xu [aut, cre] ,
Licheng Liu [aut],
Ziyi Liu [aut],
Shiyun Hu [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between gsynth versions 1.3.1 dated 2025-12-09 and 1.4.0 dated 2026-03-27
gsynth-1.3.1/gsynth/man/effect.Rd |only gsynth-1.4.0/gsynth/DESCRIPTION | 37 +++++++++++++++++++++++++------------ gsynth-1.4.0/gsynth/MD5 | 18 ++++++++++++------ gsynth-1.4.0/gsynth/NEWS.md | 11 +++++++++++ gsynth-1.4.0/gsynth/R/default.R | 26 ++++++++++++++------------ gsynth-1.4.0/gsynth/R/zzz.r | 2 +- gsynth-1.4.0/gsynth/man/effect.rd |only gsynth-1.4.0/gsynth/man/gsynth.Rd | 9 +++++---- gsynth-1.4.0/gsynth/tests |only 9 files changed, 68 insertions(+), 35 deletions(-)
Title: Retrieve Fundamental Financial Data from SEC 'EDGAR'
Description: Provides a simple, ticker-based interface for retrieving fundamental
financial data from the United States Securities and Exchange Commission's
'EDGAR' 'XBRL' API <https://www.sec.gov/edgar/sec-api-documentation>. Functions
return key financial ratios including earnings per share, return on equity,
return on assets, debt-to-equity, current ratio, gross margin, operating
margin, net margin, price-to-earnings, price-to-book, and dividend yield
for any publicly traded U.S. company. Data is sourced directly from company
10-K annual filings, requiring no API key or paid subscription. Designed for
use in quantitative finance courses and research workflows.
Author: Robert P Schumaker [aut, cre]
Maintainer: Robert P Schumaker <rob.schumaker@gmail.com>
Diff between edgarfundamentals versions 0.1.1 dated 2026-03-26 and 0.1.2 dated 2026-03-27
DESCRIPTION | 18 +++++++++--------- MD5 | 6 ++++-- NEWS.md |only R/zzz.R |only man/edgarfundamentals-package.Rd | 2 +- 5 files changed, 14 insertions(+), 12 deletions(-)
More information about edgarfundamentals at CRAN
Permanent link
Title: Multi-Model Inference
Description: Tools for model selection and model averaging with support for a
wide range of statistical models. Automated model selection through
subsets of the maximum model, with optional constraints for model
inclusion. Averaging of model parameters and predictions based on
model weights derived from information criteria (AICc and alike)
or custom model weighting schemes.
Author: Kamil Barton [aut, cre]
Maintainer: Kamil Barton <kamil.barton@go2.pl>
Diff between MuMIn versions 1.48.11 dated 2025-04-01 and 1.48.19 dated 2026-03-27
MuMIn-1.48.11/MuMIn/R/umf_specs.R |only MuMIn-1.48.19/MuMIn/DESCRIPTION | 14 MuMIn-1.48.19/MuMIn/MD5 | 39 +- MuMIn-1.48.19/MuMIn/NEWS | 29 + MuMIn-1.48.19/MuMIn/R/Weights.R | 2 MuMIn-1.48.19/MuMIn/R/addresponse.R |only MuMIn-1.48.19/MuMIn/R/class-unmarkedFit.R | 44 ++ MuMIn-1.48.19/MuMIn/R/coefTable-methods.R |only MuMIn-1.48.19/MuMIn/R/coefTable.R | 199 ------------ MuMIn-1.48.19/MuMIn/R/dredge.R | 46 +- MuMIn-1.48.19/MuMIn/R/formlist.R |only MuMIn-1.48.19/MuMIn/R/model.avg.R | 2 MuMIn-1.48.19/MuMIn/R/model.sel.R | 4 MuMIn-1.48.19/MuMIn/R/modelspecs.R | 427 +++++++++++--------------- MuMIn-1.48.19/MuMIn/R/nsubsets.R |only MuMIn-1.48.19/MuMIn/R/pdredge.R | 6 MuMIn-1.48.19/MuMIn/R/print.model.selection.R | 2 MuMIn-1.48.19/MuMIn/R/rbind.model.selection.R | 10 MuMIn-1.48.19/MuMIn/R/utils-models.R | 119 +++++-- MuMIn-1.48.19/MuMIn/data/Beetle.rda |binary MuMIn-1.48.19/MuMIn/data/Cement.rda |binary MuMIn-1.48.19/MuMIn/data/GPA.rda |binary MuMIn-1.48.19/MuMIn/man/MuMIn-package.Rd | 4 23 files changed, 397 insertions(+), 550 deletions(-)
Title: Bayesian Psychometric Measurement Using 'Stan'
Description: Estimate diagnostic classification models (also called cognitive
diagnostic models) with 'Stan'. Diagnostic classification models are
confirmatory latent class models, as described by Rupp et al.
(2010, ISBN: 978-1-60623-527-0). Automatically generate 'Stan' code for the
general loglinear cognitive diagnostic diagnostic model proposed by
Henson et al. (2009) <doi:10.1007/s11336-008-9089-5> and other subtypes that
introduce additional model constraints. Using the generated 'Stan' code,
estimate the model evaluate the model's performance using model fit indices,
information criteria, and reliability metrics.
Author: W. Jake Thompson [aut, cre] ,
Jeffrey Hoover [aut] ,
Auburn Jimenez [ctb] ,
Nathan Jones [ctb] ,
Matthew Johnson [cph] `),
University of Kansas [cph],
Institute of Education Sciences [fnd]
Maintainer: W. Jake Thompson <wjakethompson@gmail.com>
Diff between measr versions 2.0.0 dated 2026-01-14 and 2.0.1 dated 2026-03-27
DESCRIPTION | 12 +- MD5 | 40 ++++--- NEWS.md | 11 ++ R/add-model-evaluation.R | 59 +++++++++-- R/cdi.R | 11 +- R/zzz-class-dcm-estimate.R | 1 R/zzz-methods-ppmc.R | 82 ++++++++++----- R/zzz-methods-sample-ppmc.R |only R/zzz-methods-score.R | 1 R/zzz-methods-yens-q3.R | 1 README.md | 20 +-- inst/WORDLIST | 2 man/model_evaluation.Rd | 14 ++ tests/testthat/helper-skip.R | 2 tests/testthat/test-cdi.R | 10 + tests/testthat/test-ecpe.R | 23 ++++ tests/testthat/test-mcmc.R | 135 ++++++++++++++++++++++++-- tests/testthat/test-pathfinder.R | 16 ++- tests/testthat/test-variational.R | 81 +++++++++++++-- tests/testthat/test-zzz-class-dcm-estimate.R | 22 ++++ tests/testthat/test-zzz-methods-sample-ppmc.R |only vignettes/fits/ecpe-optim-lcdm.rds |binary 22 files changed, 443 insertions(+), 100 deletions(-)
Title: Air Quality Evaluation
Description: Developed for use by those tasked with the routine detection, characterisation and
quantification of discrete changes in air quality time-series, such as identifying the impacts
of air quality policy interventions. The main functions use signal isolation then
break-point/segment (BP/S) methods based on 'strucchange' and 'segmented' methods to detect and
quantify change events (Ropkins & Tate, 2021, <doi:10.1016/j.scitotenv.2020.142374>; Ropkins et
al., 2026, <doi:10.21105/joss.08839>).
Author: Karl Ropkins [aut, cre] ,
Anthony Walker [aut] ,
James Tate [aut]
Maintainer: Karl Ropkins <k.ropkins@its.leeds.ac.uk>
Diff between AQEval versions 0.6.2 dated 2025-07-14 and 0.6.11 dated 2026-03-27
DESCRIPTION | 32 ++++++------ MD5 | 30 +++++------ NEWS.md | 44 +++++++++------- R/AQEval-package.R | 11 +++- R/AQEval.data.R | 2 R/calculate.stats.R | 24 +++++++-- R/find.breaks.R | 4 - R/find.near.R | 99 ++++++++++++++++++++++++++++++++++++-- R/isolate.signal.R | 3 + build/partial.rdb |binary inst/CITATION | 15 +++-- inst/tinytest/test_AQEval_quant.R | 7 +- man/AQEval-package.Rd | 9 +++ man/AQEval.data.Rd | 2 man/find.breaks.Rd | 3 - man/isolate.signal.Rd | 3 + 16 files changed, 217 insertions(+), 71 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: Jose Pinheiro [aut] ,
Douglas Bates [aut] ,
Saikat DebRoy [ctb] ,
Deepayan Sarkar [ctb] ,
EISPACK authors [ctb] ,
Siem Heisterkamp [ctb] ,
Bert Van Willigen [ctb] ,
Johannes Ranke [ctb] ),
R Core Team [aut, cre]
Maintainer: R Core Team <R-core@R-project.org>
Diff between nlme versions 3.1-168 dated 2025-03-31 and 3.1-169 dated 2026-03-27
ChangeLog | 14 DESCRIPTION | 10 MD5 | 110 +-- R/gnls.R | 6 build/partial.rdb |binary data/Alfalfa.rda |binary data/Assay.rda |binary data/BodyWeight.rda |binary data/Cefamandole.rda |binary data/Dialyzer.rda |binary data/Earthquake.rda |binary data/Fatigue.rda |binary data/Gasoline.rda |binary data/Glucose.rda |binary data/Glucose2.rda |binary data/Gun.rda |binary data/IGF.rda |binary data/Machines.rda |binary data/MathAchSchool.rda |binary data/MathAchieve.rda |binary data/Meat.rda |binary data/Milk.rda |binary data/Muscle.rda |binary data/Nitrendipene.rda |binary data/Oats.rda |binary data/Orthodont.rda |binary data/Ovary.rda |binary data/Oxboys.rda |binary data/Oxide.rda |binary data/PBG.rda |binary data/Phenobarb.rda |binary data/Pixel.rda |binary data/Quinidine.rda |binary data/Rail.rda |binary data/RatPupWeight.rda |binary data/Relaxin.rda |binary data/Remifentanil.rda |binary data/Soybean.rda |binary data/Spruce.rda |binary data/Tetracycline1.rda |binary data/Tetracycline2.rda |binary data/Wafer.rda |binary data/Wheat.rda |binary data/Wheat2.rda |binary data/bdf.rda |binary data/ergoStool.rda |binary man/gnls.Rd | 2 po/R-de.po | 18 po/R-fr.po | 14 po/R-ko.po | 7 po/R-nlme.pot | 9 po/R-pl.po | 1291 ----------------------------------------- tests/anova.gls.R | 11 tests/extras/nlme-stall.R | 15 tests/extras/scripts.Rout.save | 24 tests/gls.R | 2 56 files changed, 132 insertions(+), 1401 deletions(-)
Title: An R Interface to Open-Access Malaria Data, Hosted by the
'Malaria Atlas Project'
Description: A suite of tools to allow you to download all
publicly available parasite rate survey points, mosquito occurrence points and raster surfaces from
the 'Malaria Atlas Project' <https://malariaatlas.org/> servers as well as utility functions for plotting
the downloaded data.
Author: Mauricio van den Berg [aut, cre],
Daniel Pfeffer [aut] ,
Tim Lucas [aut] ,
Daniel May [aut] ,
Suzanne Keddie [aut] ,
Jen Rozier [aut] ,
Oliver Watson [aut] ,
Harry Gibson [aut] ,
Nick Golding [ctb],
David Smith [ctb]
Maintainer: Mauricio van den Berg <mauricio.vandenberg@thekids.org.au>
Diff between malariaAtlas versions 1.6.4 dated 2025-06-11 and 1.7.0 dated 2026-03-27
DESCRIPTION | 8 - MD5 | 115 ++++++++-------- R/as.MAPraster.R | 14 + R/as.MAPshp.R | 2 R/autoplot.MAPraster.R | 8 - R/autoplot.MAPshp.R | 4 R/autoplot.SpatRaster.R | 6 R/autoplot.pr.points.R | 8 - R/autoplot.vector.points.R | 4 R/autoplot_MAPraster.R | 18 +- R/extractRaster.R | 14 + R/getPR.R | 1 R/getRaster.R | 51 ++++--- R/getShp.R | 4 R/getVecOcc.R | 1 R/isAvailable.R | 4 R/isAvailable_pr.R | 4 R/isAvailable_vec.R | 2 R/listData.R | 2 R/listPRPointVersions.R | 2 R/listPoints.R | 2 R/listRaster.R | 6 R/listShp.R | 2 R/listShpVersions.R | 2 R/listVecOccPointVersions.R | 2 R/malariaAtlas.R | 4 R/maskedRasterHelper.R | 5 R/ows4r_utils.R | 2 README.md | 220 +++++++++++++++---------------- build/vignette.rds |binary inst/doc/overview.html | 10 - man/as.MAPraster.Rd | 12 + man/autoplot.MAPraster.Rd | 8 - man/autoplot.MAPshp.Rd | 4 man/autoplot.SpatRaster.Rd | 6 man/autoplot.pr.points.Rd | 6 man/autoplot.vector.points.Rd | 2 man/autoplot_MAPraster.Rd | 16 +- man/figures/unnamed-chunk-21-1.png |binary man/figures/unnamed-chunk-22-1.png |binary man/figures/unnamed-chunk-26-1.png |binary man/figures/unnamed-chunk-27-1.png |binary man/figures/unnamed-chunk-30-1.png |binary man/figures/unnamed-chunk-31-1.png |binary man/figures/unnamed-chunk-33-1.png |binary man/figures/unnamed-chunk-34-1.png |binary man/figures/unnamed-chunk-35-1.png |binary man/getMaskBand.Rd |only man/getRaster.Rd | 19 -- man/isAvailable_pr.Rd | 8 - man/listRaster.Rd | 2 man/malariaAtlas.Rd | 30 ++++ tests/testthat/test_autoplot.MAPraster.R | 12 - tests/testthat/test_extractRaster.R | 6 tests/testthat/test_getPR.R | 2 tests/testthat/test_getRaster.R | 10 - tests/testthat/test_getVecOcc.R | 8 - tests/testthat/test_listData.R | 32 +--- tests/testthat/test_plots.R | 10 - 59 files changed, 388 insertions(+), 332 deletions(-)
Title: An Interface to the Reptile Database
Description: Provides tools to retrieve and summarize taxonomic information and synonymy data for reptile species using data scraped from The Reptile Database website (<https://reptile-database.reptarium.cz/>). Outputs include clean and structured data frames useful for ecological, evolutionary, and conservation research.
Author: Joao Paulo dos Santos Vieira-Alencar [aut, cre] ,
Christoph Liedtke [aut]
Maintainer: Joao Paulo dos Santos Vieira-Alencar <joaopaulo.valencar@gmail.com>
Diff between letsRept versions 1.1.0 dated 2025-10-21 and 1.1.1 dated 2026-03-27
DESCRIPTION | 8 ++++---- MD5 | 38 +++++++++++++++++++------------------- NEWS.md | 16 ++++++++++++++++ R/data_allReptiles.R | 2 +- R/data_synonyms.R | 6 +++--- R/data_synonymsRef.R | 6 +++--- R/reptAdvancedSearch.R | 6 ++++-- R/reptSearch.R | 1 - R/reptSync.R | 16 +++++++++++++--- R/reptTidySyn.R | 6 +++++- README.md | 8 ++++---- build/vignette.rds |binary data/allReptiles.rda |binary data/allSynonyms.rda |binary data/allSynonymsRef.rda |binary inst/doc/case-study.html | 6 +++--- man/allReptiles.Rd | 2 +- man/allSynonyms.Rd | 6 +++--- man/allSynonymsRef.Rd | 6 +++--- man/letsRept.Rd | 2 +- 20 files changed, 83 insertions(+), 52 deletions(-)
Title: Ensemble Models for Lactation Curves
Description: Lactation curves describe temporal changes in milk yield and are key to breeding and managing dairy animals more efficiently. The use of ensemble modeling, which consists of combining predictions from multiple models, has the potential to yields more accurate and robust estimates of lactation patterns than relying solely on single model estimates. The package EMOTIONS fits 47 models for lactation curves and creates ensemble models using model averaging based on Akaike information criterion (AIC), Bayesian information criterion (BIC), root mean square percentage error (RMSPE) and mean squared error (MAE), variance of the predictions, cosine similarity for each model's predictions, and Bayesian Model Average (BMA). The daily production values predicted through the ensemble models can be used to estimate resilience indicators in the package. The package allows the graphical visualization of the model ranks and the predicted lactation curves. Additionally, the packages allows the user to d [...truncated...]
Author: Pablo Fonseca [aut, cre],
Marcos Prates [aut],
Aroa Suarez-Vega [aut],
Ruth Arribas Gonzalo [aut],
Beatriz Gutierrez-Gil [aut],
Juan Jose Arranz [aut]
Maintainer: Pablo Fonseca <p.fonseca@csic.es>
Diff between EMOTIONS versions 1.1 dated 2026-01-28 and 1.2 dated 2026-03-27
DESCRIPTION | 6 - MD5 | 13 +- NEWS |only R/PlotMilkLoss.R | 1 R/milkloss_detect.R | 271 ++++++++++++++++++++++++++----------------------- README.md | 2 inst/doc/EMOTIONS.html | 64 +++++------ man/milkloss_detect.Rd | 2 8 files changed, 188 insertions(+), 171 deletions(-)
Title: Datasets of the CEO (Centre d'Estudis d'Opinio) for Opinion
Polls in Catalonia
Description: Easy and convenient access to the datasets of the
"Centre d'Estudis d'Opinio", the Catalan institution for polling and public
opinion. The package retrieves microdata directly from the open data platform
of the Generalitat de Catalunya and returns it in a tidy format.
Author: Xavier Fernandez-i-Marin [aut] ,
Joel Ardiaca [aut, cre]
Maintainer: Joel Ardiaca <joelardiacaarnau@gencat.cat>
This is a re-admission after prior archival of version 1.3.1.1 dated 2023-07-06
Diff between CEOdata versions 1.3.1.1 dated 2023-07-06 and 1.4.0 dated 2026-03-27
CEOdata-1.3.1.1/CEOdata/R/globals.R |only CEOdata-1.3.1.1/CEOdata/R/help.R |only CEOdata-1.3.1.1/CEOdata/inst/doc/cheatsheet.pdf |only CEOdata-1.3.1.1/CEOdata/inst/doc/cheatsheet.pdf.asis |only CEOdata-1.3.1.1/CEOdata/tests/testthat/test_size_barometer.R |only CEOdata-1.3.1.1/CEOdata/vignettes/cheatsheet.pdf.asis |only CEOdata-1.4.0/CEOdata/DESCRIPTION | 40 CEOdata-1.4.0/CEOdata/MD5 | 74 CEOdata-1.4.0/CEOdata/NAMESPACE | 47 CEOdata-1.4.0/CEOdata/NEWS | 177 - CEOdata-1.4.0/CEOdata/R/CEOaccumulated_meta.R |only CEOdata-1.4.0/CEOdata/R/CEOdata-package.R |only CEOdata-1.4.0/CEOdata/R/CEOdata.R | 449 +- CEOdata-1.4.0/CEOdata/R/CEOmeta.R | 634 ++-- CEOdata-1.4.0/CEOdata/R/CEOsearch.R | 242 - CEOdata-1.4.0/CEOdata/R/helpers.R |only CEOdata-1.4.0/CEOdata/R/io.R |only CEOdata-1.4.0/CEOdata/R/zzz.R | 58 CEOdata-1.4.0/CEOdata/README.md | 78 CEOdata-1.4.0/CEOdata/build/vignette.rds |binary CEOdata-1.4.0/CEOdata/inst/doc/using_CEOdata.R | 241 - CEOdata-1.4.0/CEOdata/inst/doc/using_CEOdata.Rmd | 588 +-- CEOdata-1.4.0/CEOdata/inst/doc/using_CEOdata.html | 1580 ++++------ CEOdata-1.4.0/CEOdata/inst/doc/working_with_survey_data_using_the_CEOdata_package.R | 251 - CEOdata-1.4.0/CEOdata/inst/doc/working_with_survey_data_using_the_CEOdata_package.Rmd | 437 +- CEOdata-1.4.0/CEOdata/inst/doc/working_with_survey_data_using_the_CEOdata_package.html | 1506 ++++----- CEOdata-1.4.0/CEOdata/inst/extdata |only CEOdata-1.4.0/CEOdata/man/CEOaccumulated_meta.Rd |only CEOdata-1.4.0/CEOdata/man/CEOaccumulated_metadata.Rd |only CEOdata-1.4.0/CEOdata/man/CEOdata-package.Rd |only CEOdata-1.4.0/CEOdata/man/CEOdata.Rd | 111 CEOdata-1.4.0/CEOdata/man/CEOmeta.Rd | 133 CEOdata-1.4.0/CEOdata/man/CEOsearch.Rd | 96 CEOdata-1.4.0/CEOdata/man/ceodata_detect_type.Rd |only CEOdata-1.4.0/CEOdata/man/ceodata_download.Rd |only CEOdata-1.4.0/CEOdata/man/ceodata_download_and_read.Rd |only CEOdata-1.4.0/CEOdata/man/ceodata_read_sav.Rd |only CEOdata-1.4.0/CEOdata/man/ceodata_sav_from_zip.Rd |only CEOdata-1.4.0/CEOdata/man/getCEOaccumulated_metadata.Rd |only CEOdata-1.4.0/CEOdata/man/read.ceo.json.Rd | 32 CEOdata-1.4.0/CEOdata/man/the.Rd | 37 CEOdata-1.4.0/CEOdata/tests/testthat/test_accumulated_meta_active_only.R |only CEOdata-1.4.0/CEOdata/tests/testthat/test_ceodata_core.R |only CEOdata-1.4.0/CEOdata/tests/testthat/test_conversion_factors.R | 41 CEOdata-1.4.0/CEOdata/tests/testthat/test_meta_filters.R |only CEOdata-1.4.0/CEOdata/tests/testthat/test_oldest_barometer.R | 44 CEOdata-1.4.0/CEOdata/vignettes/using_CEOdata.Rmd | 588 +-- CEOdata-1.4.0/CEOdata/vignettes/working_with_survey_data_using_the_CEOdata_package.Rmd | 437 +- 48 files changed, 4117 insertions(+), 3804 deletions(-)
Title: Stratified-Petersen Analysis System
Description: The Stratified-Petersen Analysis System (SPAS) is designed
to estimate abundance in two-sample capture-recapture experiments
where the capture and recaptures are stratified. This is a generalization
of the simple Lincoln-Petersen estimator.
Strata may be defined in time or in space or both,
and the s strata in which marking takes place
may differ from the t strata in which recoveries take place.
When s=t, SPAS reduces to the method described by
Darroch (1961) <doi:10.2307/2332748>.
When s<t, SPAS implements the methods described in
Plante, Rivest, and Tremblay (1988) <doi:10.2307/2533994>.
Schwarz and Taylor (1998) <doi:10.1139/f97-238> describe
the use of SPAS in estimating return of salmon stratified by
time and geography.
A related package, BTSPAS, deals with temporal stratification where
a spline is used to model the distribution of the population
over time as it passes the second capture location.
This is the R-version of the (now obsolete) standalone Windows
[...truncated...]
Author: Carl James Schwarz [aut, cre]
Maintainer: Carl James Schwarz <cschwarz.stat.sfu.ca@gmail.com>
Diff between SPAS versions 2025.2.1 dated 2025-02-06 and 2026.4.1 dated 2026-03-27
DESCRIPTION | 12 +++--- MD5 | 20 +++++------ NEWS.md | 8 ++++ build/vignette.rds |binary inst/doc/AutomaticPooling.html | 15 ++++---- inst/doc/Conne1991.html | 29 ++++++++-------- inst/doc/Conne1992.html | 25 +++++++------ inst/doc/HarrisonF2011.html | 65 ++++++++++++++++++------------------ inst/doc/PoolingColumns.html | 61 +++++++++++++++++---------------- inst/doc/TestingPooledPetersen.html | 39 +++++++++++---------- inst/doc/ThingsThatGoWrong.html | 25 +++++++------ 11 files changed, 158 insertions(+), 141 deletions(-)
Title: Interpolate Bathymetry and Quantify Physical Aquatic Habitat
Description: Offers bathymetric interpolation using Inverse Distance Weighted and Ordinary Kriging via the 'gstat' and 'terra' packages. Other functions focus on quantifying physical aquatic habitats (e.g., littoral, epliminion, metalimnion, hypolimnion) from interpolated digital elevation models (DEMs). Functions were designed to calculate these metrics across water levels for use in reservoirs but can be applied to any DEM and will provide values for fixed conditions. Parameters like Secchi disk depth or estimated photic zone, thermocline depth, and water level fluctuation depth are included in most functions.
Author: Tristan Blechinger [aut, cre] ,
Sean Bertalot [aut]
Maintainer: Tristan Blechinger <tblechin@uwyo.edu>
Diff between rLakeHabitat versions 1.0.1 dated 2025-11-07 and 1.0.2 dated 2026-03-27
DESCRIPTION | 8 MD5 | 37 - NAMESPACE | 1 R/animBathy.R | 13 R/bathyMap.R | 2 R/calcHyps.R | 2 R/calcLittoral.R | 11 R/calcPhotic.R |only R/calcVolume.R | 8 R/crossValidate.R | 22 R/interpBathy.R | 949 +++++++++++++++++++++------------------ R/littoralVol.R | 19 R/trueSA.R | 2 man/animBathy.Rd | 7 man/bathyMap.Rd | 2 man/calcHyps.Rd | 2 man/calcLittoral.Rd | 7 man/calcPhotic.Rd |only man/calcVolume.Rd | 2 man/littoralVol.Rd | 7 tests/testthat/test-calcPhotic.R |only 21 files changed, 613 insertions(+), 488 deletions(-)
Title: Hedonic and Multilateral Index Methods for Real Estate Price
Statistics
Description: Compute price indices using various Hedonic and
multilateral methods, including Laspeyres, Paasche, Fisher, and HMTS (Hedonic
Multilateral Time series re-estimation with splicing). The central function
calculate_hedonic_index() offers a unified interface for running these methods
on structured datasets. This package is designed to support index construction workflows across a wide range of domains
— including but not limited to real estate — where quality-adjusted price comparisons over time are essential.
The development of this package was funded by Eurostat and Statistics Netherlands (CBS), and carried out by Statistics Netherlands.
The HMTS method implemented here is described in Ishaak, Ouwehand and Remøy (2024)
<doi:10.1177/0282423X241246617>. For broader methodological context, see Eurostat
(2013, ISBN:978-92-79-25984-5, <doi:10.2785/34007>).
Author: Farley Ishaak [aut],
Pim Ouwehand [aut],
David Pietersz [aut],
Liu Nuo Su [aut],
Cynthia Cao [aut],
Mohammed Kardal [aut],
Odens van der Zwan [aut],
Vivek Gajadhar [aut, cre]
Maintainer: Vivek Gajadhar <v.gajadhar@cbs.nl>
Diff between REPS versions 1.1.0 dated 2026-03-16 and 1.1.1 dated 2026-03-27
REPS-1.1.0/REPS/inst/doc/calculate_price_index.R |only REPS-1.1.0/REPS/inst/doc/calculate_price_index.Rmd |only REPS-1.1.0/REPS/inst/doc/calculate_price_index.html |only REPS-1.1.0/REPS/tests/testthat/test-helpers.R |only REPS-1.1.0/REPS/vignettes/calculate_price_index.Rmd |only REPS-1.1.1/REPS/DESCRIPTION | 6 REPS-1.1.1/REPS/MD5 | 72 +-- REPS-1.1.1/REPS/NEWS.md | 16 REPS-1.1.1/REPS/R/calculate_fisher.R | 26 - REPS-1.1.1/REPS/R/calculate_hedonic_index.R | 71 ++- REPS-1.1.1/REPS/R/calculate_hmts.R | 4 REPS-1.1.1/REPS/R/calculate_laspeyres.R | 53 +- REPS-1.1.1/REPS/R/calculate_paasche.R | 60 +- REPS-1.1.1/REPS/R/calculate_regression_diagnostics.R | 20 REPS-1.1.1/REPS/R/calculate_repricing.R | 84 +--- REPS-1.1.1/REPS/R/calculate_timedummy.R | 74 +-- REPS-1.1.1/REPS/R/hmts_helpers.R | 7 REPS-1.1.1/REPS/R/index_helpers.R | 203 +++++++--- REPS-1.1.1/REPS/R/ts_helpers.R | 5 REPS-1.1.1/REPS/build/vignette.rds |binary REPS-1.1.1/REPS/inst/doc/calculate_hedonic_index.R |only REPS-1.1.1/REPS/inst/doc/calculate_hedonic_index.Rmd |only REPS-1.1.1/REPS/inst/doc/calculate_hedonic_index.html |only REPS-1.1.1/REPS/man/calculate_fisher.Rd | 2 REPS-1.1.1/REPS/man/calculate_hedonic_imputation.Rd | 2 REPS-1.1.1/REPS/man/calculate_hedonic_imputationmatrix.Rd | 3 REPS-1.1.1/REPS/man/calculate_hedonic_index.Rd | 25 + REPS-1.1.1/REPS/man/calculate_hmts.Rd | 3 REPS-1.1.1/REPS/man/calculate_hmts_index.Rd | 3 REPS-1.1.1/REPS/man/calculate_index.Rd | 2 REPS-1.1.1/REPS/man/calculate_laspeyres.Rd | 2 REPS-1.1.1/REPS/man/calculate_paasche.Rd | 2 REPS-1.1.1/REPS/man/calculate_trend_line_kfas.Rd | 4 REPS-1.1.1/REPS/man/fit_hedonic_model.Rd |only REPS-1.1.1/REPS/man/format_index_output.Rd |only REPS-1.1.1/REPS/man/predict_hedonic.Rd |only REPS-1.1.1/REPS/man/prepare_hedonic_data.Rd |only REPS-1.1.1/REPS/tests/testthat/test-calculate_hedonic_index.R | 80 +++ REPS-1.1.1/REPS/tests/testthat/test-hmts_helpers.R | 4 REPS-1.1.1/REPS/tests/testthat/test-index_helpers.R |only REPS-1.1.1/REPS/tests/testthat/test-ts_helpers.R | 4 REPS-1.1.1/REPS/tests/testthat/test_data/laspeyres_output.rds |binary REPS-1.1.1/REPS/tests/testthat/test_hmts.R | 1 REPS-1.1.1/REPS/vignettes/calculate_hedonic_index.Rmd |only 44 files changed, 503 insertions(+), 335 deletions(-)
Title: Matrix Normal Distribution
Description: Density computation, random matrix generation and maximum likelihood estimation of the matrix normal distribution. References: Pocuca N., Gallaugher M. P., Clark K. M. & McNicholas P. D. (2019). Assessing and Visualizing Matrix Variate Normality. <doi:10.48550/arXiv.1910.02859> and the relevant wikipedia page.
Author: Michail Tsagris [aut, cre],
Alzeley Omar [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between MN versions 1.0 dated 2024-05-22 and 1.1 dated 2026-03-27
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 + R/rmn.R | 2 +- man/MN-package.Rd | 4 ++-- man/mn.mle.Rd | 2 +- 6 files changed, 15 insertions(+), 14 deletions(-)
Title: Fixed Effects Counterfactual Estimators
Description: Provides tools for estimating causal effects in panel data using counterfactual methods, as well as other modern DID estimators. It is designed for causal panel analysis with binary treatments under the parallel trends assumption. The package supports scenarios where treatments can switch on and off and allows for limited carryover effects. It includes several imputation estimators, such as Gsynth (Xu 2017), linear factor models, and the matrix completion method. Detailed methodology is described in Liu, Wang, and Xu (2024) <doi:10.48550/arXiv.2107.00856> and Chiu et al. (2025) <doi:10.48550/arXiv.2309.15983>. Optionally integrates with the "HonestDiDFEct" package for sensitivity analyses compatible with imputation estimators. "HonestDiDFEct" is not on CRAN but can be obtained from <https://github.com/lzy318/HonestDiDFEct>.
Author: Licheng Liu [aut],
Ziyi Liu [aut],
Ye Wang [aut],
Yiqing Xu [aut, cre],
Tianzhu Qin [aut],
Shiyun Hu [aut],
Rivka Lipkovitz [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between fect versions 2.1.0 dated 2026-01-17 and 2.2.0 dated 2026-03-27
fect-2.1.0/fect/R/fect_gsynth.R |only fect-2.1.0/fect/data/datalist |only fect-2.1.0/fect/data/fect.RData |only fect-2.1.0/fect/man/effect.rd |only fect-2.1.0/fect/tests/testthat/test-gsynth-parametric-group-att-align.R |only fect-2.2.0/fect/DESCRIPTION | 15 fect-2.2.0/fect/MD5 | 99 fect-2.2.0/fect/NAMESPACE | 6 fect-2.2.0/fect/R/boot.R | 663 ++++-- fect-2.2.0/fect/R/cfe.R | 109 - fect-2.2.0/fect/R/cumu.R | 4 fect-2.2.0/fect/R/cv.R | 285 +- fect-2.2.0/fect/R/cv_binary.R | 8 fect-2.2.0/fect/R/default.R | 478 ++-- fect-2.2.0/fect/R/effect.R | 26 fect-2.2.0/fect/R/esplot.R | 336 ++- fect-2.2.0/fect/R/fe.R | 175 + fect-2.2.0/fect/R/fect_iden.R |only fect-2.2.0/fect/R/fect_mspe.R |only fect-2.2.0/fect/R/fect_nevertreated.R |only fect-2.2.0/fect/R/fect_sens.R | 45 fect-2.2.0/fect/R/fittest.R | 10 fect-2.2.0/fect/R/getcohort.R | 75 fect-2.2.0/fect/R/mc.R | 43 fect-2.2.0/fect/R/plot.R | 1088 ++++++++-- fect-2.2.0/fect/R/polynomial.R | 3 fect-2.2.0/fect/R/score.R |only fect-2.2.0/fect/R/support.R | 53 fect-2.2.0/fect/data/sim_base.rda |only fect-2.2.0/fect/data/sim_gsynth.rda |only fect-2.2.0/fect/data/sim_linear.rda |only fect-2.2.0/fect/data/sim_region.rda |only fect-2.2.0/fect/data/sim_trend.rda |only fect-2.2.0/fect/man/effect.Rd |only fect-2.2.0/fect/man/esplot.Rd | 29 fect-2.2.0/fect/man/fect.Rd | 29 fect-2.2.0/fect/man/fect_iden.Rd |only fect-2.2.0/fect/man/fect_mspe.Rd |only fect-2.2.0/fect/man/interFE.Rd | 2 fect-2.2.0/fect/man/plot.fect.Rd | 18 fect-2.2.0/fect/man/print.fect.Rd | 2 fect-2.2.0/fect/man/print.interFE.Rd | 2 fect-2.2.0/fect/man/sim_base.Rd |only fect-2.2.0/fect/man/sim_gsynth.Rd |only fect-2.2.0/fect/man/sim_linear.Rd |only fect-2.2.0/fect/man/sim_region.Rd |only fect-2.2.0/fect/man/sim_trend.Rd |only fect-2.2.0/fect/src/binary_qr.cpp | 8 fect-2.2.0/fect/src/binary_svd.cpp | 8 fect-2.2.0/fect/src/cfe_sub.cpp | 12 fect-2.2.0/fect/src/ife_sub.cpp | 50 fect-2.2.0/fect/tests/testthat/test-book-claims.R |only fect-2.2.0/fect/tests/testthat/test-cumu-effect-esplot.R | 1 fect-2.2.0/fect/tests/testthat/test-did-wrapper.R | 1 fect-2.2.0/fect/tests/testthat/test-edge-cases.R |only fect-2.2.0/fect/tests/testthat/test-factors-from-refactor.R |only fect-2.2.0/fect/tests/testthat/test-fect-sens.R | 1 fect-2.2.0/fect/tests/testthat/test-getcohort.R | 1 fect-2.2.0/fect/tests/testthat/test-normalization.R |only fect-2.2.0/fect/tests/testthat/test-plot-fect.R | 61 fect-2.2.0/fect/tests/testthat/test-plot-refactor.R |only fect-2.2.0/fect/tests/testthat/test-score-unify.R |only fect-2.2.0/fect/tests/testthat/test-simulation-cfe.R |only fect-2.2.0/fect/tests/testthat/test-simulation-fe.R |only fect-2.2.0/fect/tests/testthat/test-simulation-ife.R |only fect-2.2.0/fect/tests/testthat/test-simulation-staggered.R |only fect-2.2.0/fect/tests/testthat/test-utility-functions.R |only 67 files changed, 2678 insertions(+), 1068 deletions(-)
Title: Bitmap Tools
Description: Provides functions for creating, modifying, and displaying bitmaps including printing them in the terminal. There is a special emphasis on monochrome bitmap fonts and their glyphs as well as colored pixel art/sprites. Provides native read/write support for the 'hex' and 'yaff' bitmap font formats and if 'monobit' <https://github.com/robhagemans/monobit> is installed can also read/write several additional bitmap font formats.
Author: Trevor L. Davis [aut, cre] ,
Frederic Cambus [tyg] ,
Markus Kuhn [tyg] ,
josehzz [art]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between bittermelon versions 2.2.1 dated 2026-01-29 and 2.3.1 dated 2026-03-27
DESCRIPTION | 8 - MD5 | 165 ++++++++++++++-------- NAMESPACE | 7 NEWS.md | 31 ++++ R/as.data.frame.bm_matrix.R | 2 R/as.matrix.bm_matrix.R | 3 R/as_bm_bitmap.R | 21 ++ R/as_bm_list.R | 2 R/as_bm_pixmap.R | 25 +++ R/bittermelon-package.R | 2 R/bm_bytepad.R |only R/bm_compress.R | 5 R/bm_expand.R | 8 - R/bm_extend.R | 204 +++++++++++++++++++++++----- R/bm_extract.R | 4 R/bm_font.R | 113 ++++++++++++++- R/bm_list.R | 27 ++- R/bm_pixel_picker.R | 3 R/bm_rotate.R | 140 ++++++++++++++++--- R/bm_shift.R | 131 ++++++++++++++++- R/hex.R | 18 ++ R/lengths.R | 10 + R/monobit.R | 4 R/plot.bm_matrix.R | 2 R/yaff.R | 151 +++++++++++++++++--- build/vignette.rds |binary inst/doc/bittermelon.html | 6 man/as_bm_pixmap.Rd | 39 +++++ man/bittermelon.Rd | 2 man/bm_bytepad.Rd |only man/bm_extend.Rd | 48 +++++- man/bm_lapply.Rd | 5 man/bm_rotate.Rd | 58 ++++++- man/bm_shift.Rd | 43 +++++ man/is_bm_list.Rd | 10 + man/monobit.Rd | 3 man/summary.bm_font.Rd |only man/yaff_font.Rd | 11 + tests/testthat/_problems |only tests/testthat/_snaps/bm_font.md |only tests/testthat/_snaps/bm_rotate.md |only tests/testthat/_snaps/bm_shift.md |only tests/testthat/_snaps/hex.md |only tests/testthat/_snaps/yaff.md |only tests/testthat/test-bm_bitmap.R | 1 tests/testthat/test-bm_bytepad.R |only tests/testthat/test-bm_clamp.R | 2 tests/testthat/test-bm_distort.R | 2 tests/testthat/test-bm_expand.R | 2 tests/testthat/test-bm_extend.R | 50 ++++++ tests/testthat/test-bm_extract.R | 2 tests/testthat/test-bm_flip.R | 26 --- tests/testthat/test-bm_font.R | 31 ++++ tests/testthat/test-bm_gray.R | 2 tests/testthat/test-bm_invert.R | 2 tests/testthat/test-bm_list.R | 25 +++ tests/testthat/test-bm_mask.R | 2 tests/testthat/test-bm_options.R | 1 tests/testthat/test-bm_outline.R | 2 tests/testthat/test-bm_overlay.R | 4 tests/testthat/test-bm_pad.R | 1 tests/testthat/test-bm_pixmap.R | 3 tests/testthat/test-bm_replace.R | 2 tests/testthat/test-bm_rotate.R |only tests/testthat/test-bm_shift.R | 34 ++++ tests/testthat/test-bm_trim.R | 23 --- tests/testthat/test-gridpattern.R | 2 tests/testthat/test-hex.R | 9 + tests/testthat/test-print.bm_bitmap.R | 1 tests/testthat/test-print.bm_pixmap.R | 2 tests/testthat/test-yaff.R | 116 +++++++++++++++ tests/testthat/txt/bm_rotate_in_place.txt |only tests/testthat/txt/bm_shift_overflow.txt |only tests/testthat/txt/capital_r_rotated180.txt | 22 +-- 74 files changed, 1405 insertions(+), 275 deletions(-)
Title: Poisson Network Autoregressive Models
Description: Quasi likelihood-based methods for estimating linear and log-linear Poisson Network Autoregression models with p lags and covariates. Tools for testing the linearity versus several non-linear alternatives. Tools for simulation of multivariate count distributions, from linear and non-linear PNAR models, by using a specific copula construction. References include: Armillotta, M. and K. Fokianos (2023). "Nonlinear network autoregression". Annals of Statistics, 51(6): 2526--2552. <doi:10.1214/23-AOS2345>. Armillotta, M. and K. Fokianos (2024). "Count network autoregression". Journal of Time Series Analysis, 45(4): 584--612. <doi:10.1111/jtsa.12728>. Armillotta, M., Tsagris, M. and Fokianos, K. (2023). "Inference for Network Count Time Series with the R Package PNAR". The R Journal, 15/4: 255--269. <doi:10.32614/RJ-2023-094>.
Author: Michail Tsagris [aut, cre],
Mirko Armillotta [aut, cph],
Konstantinos Fokianos [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between PNAR versions 1.7 dated 2024-09-05 and 1.8 dated 2026-03-27
DESCRIPTION | 14 +++++------ MD5 | 48 +++++++++++++++++++------------------- NAMESPACE | 5 ++- R/rcopula.R | 10 +++---- man/PNAR-package.Rd | 8 +++--- man/global_optimise_LM_stnarpq.Rd | 2 - man/global_optimise_LM_tnarpq.Rd | 2 - man/lin_estimnarpq.Rd | 2 - man/lin_ic_plot.Rd | 2 - man/lin_narpq_init.Rd | 2 - man/log_lin_estimnarpq.Rd | 2 - man/log_lin_ic_plot.Rd | 2 - man/log_lin_narpq_init.Rd | 2 - man/poisson.MODpq.Rd | 2 - man/poisson.MODpq.log.Rd | 2 - man/poisson.MODpq.nonlin.Rd | 2 - man/poisson.MODpq.stnar.Rd | 2 - man/poisson.MODpq.tnar.Rd | 2 - man/score_test_nonlinpq_h0.Rd | 2 - man/score_test_stnarpq_DV.Rd | 2 - man/score_test_stnarpq_j.Rd | 2 - man/score_test_tnarpq_j.Rd | 2 - man/summary.DV.Rd | 2 - man/summary.PNAR.Rd | 2 - man/summary.nonlin.Rd | 2 - 25 files changed, 63 insertions(+), 62 deletions(-)
Title: Maximum Likelihood Estimation of Various Univariate and
Multivariate Distributions
Description: Several functions for maximum likelihood estimation of various univariate and multivariate distributions. The list includes more than 100 functions for univariate continuous and discrete distributions, distributions that lie on the real line, the positive line, interval restricted, circular distributions. Further, multivariate continuous and discrete distributions, distributions for compositional and directional data, etc. Some references include Johnson N. L., Kotz S. and Balakrishnan N. (1994). "Continuous Univariate Distributions, Volume 1" <ISBN:978-0-471-58495-7>, Johnson, Norman L. Kemp, Adrianne W. Kotz, Samuel (2005). "Univariate Discrete Distributions". <ISBN:978-0-471-71580-1> and Mardia, K. V. and Jupp, P. E. (2000). "Directional Statistics". <ISBN:978-0-471-95333-3>.
Author: Michail Tsagris [aut, cre],
Sofia Piperaki [aut],
Muhammad Imran [ctb],
Rafail Vargiakakis [aut],
Nikolaos Kontemeniotis [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between MLE versions 1.6 dated 2025-10-20 and 1.7 dated 2026-03-27
DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- NAMESPACE | 3 ++- R/colpositive.mle.R | 26 ++++++++++++++++++++++++++ R/colprop.mle.R | 7 ++++++- R/positive.mle.R | 6 ++++++ R/prop.mle.R | 11 ++++++++++- man/MLE-package.Rd | 4 ++-- man/colpositive.mle.Rd | 23 ++++++++++++++++++++--- man/colprop.mle.Rd | 7 ++++++- man/positive.mle.Rd | 19 ++++++++++++++++++- man/prop.mle.Rd | 6 +++++- 12 files changed, 118 insertions(+), 28 deletions(-)
Title: Estimation of Recombination Rate and Maternal LD in Half-Sibs
Description: Paternal recombination rate and maternal linkage disequilibrium
(LD) are estimated for pairs of biallelic markers such as single nucleotide
polymorphisms (SNPs) from progeny genotypes and sire haplotypes. The
implementation relies on paternal half-sib families. If maternal half-sib
families are used, the roles of sire/dam are swapped. Multiple families can
be considered. For parameter estimation, at least one sire has to be double
heterozygous at the investigated pairs of SNPs.
Based on recombination rates, genetic distances between markers can be
estimated. Markers with unusually large recombination rate to markers in
close proximity (i.e. putatively misplaced markers) shall be discarded in
this derivation.
A workflow description is attached as vignette.
*A pipeline is available at GitHub*
<https://github.com/wittenburg/hsrecombi>
Hampel, Teuscher, Gomez-Raya, Doschoris, Wittenburg (2018) "Estimation of
recombination rate and maternal linkage disequilibrium in half-sibs"
<doi [...truncated...]
Author: Doerte Wittenburg [aut, cre]
Maintainer: Doerte Wittenburg <wittenburg@fbn-dummerstorf.de>
Diff between hsrecombi versions 1.0.1 dated 2023-06-07 and 1.1.0 dated 2026-03-27
DESCRIPTION | 12 - MD5 | 38 +-- NAMESPACE | 2 NEWS.md | 11 + R/functions.R | 41 ++- R/hsrecombi.R | 19 - R/targetregion.R | 1 build/partial.rdb |binary build/vignette.rds |binary data/targetregion.RData |binary inst/doc/hsrecombi_workflow.R | 4 inst/doc/hsrecombi_workflow.Rmd | 2 inst/doc/hsrecombi_workflow.html | 418 +++++++++++++++++++-------------------- man/checkCandidates.Rd | 2 man/editraw.Rd | 2 man/geneticPosition.Rd | 2 man/makehaplist.Rd | 2 man/targetregion.Rd | 1 src/LDHSc.cpp | 4 vignettes/hsrecombi_workflow.Rmd | 2 20 files changed, 294 insertions(+), 269 deletions(-)
Title: DicePlot Visualization for 'ggplot2'
Description: Provides 'ggplot2' extensions for creating dice-based visualizations
where each dot position represents a specific categorical variable. The package
includes 'geom_dice()' for displaying presence/absence of categorical variables
using traditional dice patterns. Each dice position (1-6) represents a different
category, with dots shown only when that category is present. This allows
intuitive visualization of up to 6 categorical variables simultaneously.
Author: Matthias Flotho [aut, cre]
Maintainer: Matthias Flotho <matthias.flotho@ccb.uni-saarland.de>
Diff between ggdiceplot versions 1.1.0 dated 2026-03-23 and 1.2.0 dated 2026-03-27
DESCRIPTION | 22 +++++++++++----------- MD5 | 9 +++++---- NAMESPACE | 1 + NEWS.md | 14 ++++++++++++++ R/geom-dice-ggprotto.R | 6 ++++-- inst |only 6 files changed, 35 insertions(+), 17 deletions(-)
Title: Resolving Plant Taxon Names Using the Australian Plant Census
Description: The process of resolving and updating taxon names is necessary when
working with biodiversity data. 'APCalign' uses the Australian Plant Census
(APC) and the Australian Plant Name Index (APNI) to align and update plant
taxon names to current, accepted standards. 'APCalign' also supplies
information about the establishment status (i.e. native or introduced) of
plant taxa across different states/territories.
Author: Elizabeth Wenk [aut, cre, cph] ,
Daniel Falster [aut, ctb] ,
Will Cornwell [aut, ctb] ,
Fonti Kar [aut, ctb] ,
Carl Boettiger [ctb]
Maintainer: Elizabeth Wenk <e.wenk@unsw.edu.au>
Diff between APCalign versions 1.1.3 dated 2025-02-11 and 2.0.0 dated 2026-03-27
DESCRIPTION | 38 MD5 | 81 NAMESPACE | 2 NEWS.md | 17 R/APCalign-package.R | 8 R/align_taxa.R | 18 R/create_species_state_origin_matrix.R | 32 R/data.R | 3 R/load_taxonomic_resources.R | 245 R/match_taxa.R | 188 R/native_anywhere_in_australia.R | 9 R/standardise_names.R | 26 R/state_diversity_counts.R | 20 R/synonyms_for_accepted_names.R |only R/update_taxonomy.R | 12 README.md | 157 build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 9 inst/doc/APCalign.Rmd | 115 inst/doc/APCalign.html | 312 inst/doc/updating-taxon-names.R | 1 inst/doc/updating-taxon-names.Rmd | 1 man/APCalign.Rd | 8 man/align_taxa.Rd | 6 man/clear_cached_resources.Rd |only man/create_species_state_origin_matrix.Rd | 17 man/create_taxonomic_update_lookup.Rd | 6 man/gbif_lite.Rd | 1 man/load_taxonomic_resources.Rd | 11 man/native_anywhere_in_australia.Rd | 6 man/reexports.Rd | 2 man/state_diversity_counts.Rd | 15 man/synonyms_for_accepted_names.Rd |only man/update_taxonomy.Rd | 6 tests/testthat/benchmarks/state_diversity.csv |52518 ++++++++++---------- tests/testthat/helper.R | 7 tests/testthat/teardown.R |only tests/testthat/test-cache.R |only tests/testthat/test-connection.R | 92 tests/testthat/test-operation_outputs.R | 71 tests/testthat/test-state_diversity.R | 34 tests/testthat/test-taxonomic_resources_structure.R |only vignettes/APCalign.Rmd | 115 vignettes/updating-taxon-names.Rmd | 1 45 files changed, 27413 insertions(+), 26797 deletions(-)
Title: 'Ace' and 'Monaco' Editors Bindings for 'shiny' Application
Description: 'Ace' and 'Monaco' editor bindings to enable a rich text widget
within 'shiny' application and provide more features, e.g. text comparison,
spell checking and an extra 'SAS' code highlight mode.
Author: zearoby [aut, cre]
Maintainer: zearoby <949386232@qq.com>
Diff between shinyEditor versions 0.1.0 dated 2026-02-08 and 1.0.0 dated 2026-03-27
shinyEditor-0.1.0/shinyEditor/inst/htmlwidgets/lib/aceSpellChecker.css |only shinyEditor-1.0.0/shinyEditor/DESCRIPTION | 8 - shinyEditor-1.0.0/shinyEditor/MD5 | 38 +++-- shinyEditor-1.0.0/shinyEditor/NAMESPACE | 1 shinyEditor-1.0.0/shinyEditor/NEWS.md | 14 -- shinyEditor-1.0.0/shinyEditor/R/monacoEditor.R | 4 shinyEditor-1.0.0/shinyEditor/R/shiny-monaco.R | 43 ++++++ shinyEditor-1.0.0/shinyEditor/R/utils.R | 9 - shinyEditor-1.0.0/shinyEditor/README.md | 8 - shinyEditor-1.0.0/shinyEditor/inst/examples/04-monaco_editor/server.R | 64 ++++++++-- shinyEditor-1.0.0/shinyEditor/inst/examples/04-monaco_editor/ui.R | 15 +- shinyEditor-1.0.0/shinyEditor/inst/htmlwidgets/aceDiffEditor.yaml | 2 shinyEditor-1.0.0/shinyEditor/inst/htmlwidgets/aceEditor.yaml | 2 shinyEditor-1.0.0/shinyEditor/inst/htmlwidgets/lib/aceSpellChecker.js | 10 - shinyEditor-1.0.0/shinyEditor/inst/htmlwidgets/lib/createMonacoEditor.js | 38 +++-- shinyEditor-1.0.0/shinyEditor/inst/htmlwidgets/lib/monacoSpellChecker.js |only shinyEditor-1.0.0/shinyEditor/inst/htmlwidgets/lib/spellChecker.css |only shinyEditor-1.0.0/shinyEditor/inst/htmlwidgets/monacoDiffEditor.yaml | 5 shinyEditor-1.0.0/shinyEditor/inst/htmlwidgets/monacoEditor.yaml | 5 shinyEditor-1.0.0/shinyEditor/man/check_output_id.Rd | 5 shinyEditor-1.0.0/shinyEditor/man/monacoEditor.Rd | 3 shinyEditor-1.0.0/shinyEditor/man/setMonacoEnableSpellCheck.Rd |only 22 files changed, 195 insertions(+), 79 deletions(-)
Title: Genotype Quality Control with 'PLINK'
Description: Genotyping arrays enable the direct measurement of an individuals
genotype at thousands of markers. 'plinkQC' facilitates genotype quality
control for genetic association studies as described by Anderson and
colleagues (2010) <doi:10.1038/nprot.2010.116>. It makes 'PLINK' basic
statistics (e.g. missing genotyping rates per individual, allele frequencies
per genetic marker) and relationship functions accessible from 'R' and
generates a per-individual and per-marker quality control report.
Individuals and markers that fail the quality control can subsequently be
removed to generate a new, clean dataset. Removal of individuals based on
relationship status is optimised to retain as many individuals as possible
in the study. Additionally, there is a trained classifier to predict
genomic ancestry of human samples.
Author: Hannah Meyer [aut, cre] ,
Caroline Walter [ctb],
Maha Syed [ctb]
Maintainer: Hannah Meyer <hannah.v.meyer@gmail.com>
Diff between plinkQC versions 1.0.1 dated 2026-02-09 and 1.1.0 dated 2026-03-27
DESCRIPTION | 6 MD5 | 58 ++++---- NAMESPACE | 2 NEWS.md | 10 + R/ancestry.R | 259 +++++++++++++++++++++++++++++++----- R/individualQC.R | 182 +++++++++++++++++++++++-- inst/doc/AncestryCheck.R | 25 ++- inst/doc/AncestryCheck.Rmd | 41 +++-- inst/doc/AncestryCheck.html | 49 ++++-- inst/doc/Genomes1000.pdf |binary inst/doc/HapMap.pdf |binary inst/doc/plinkQC.R | 3 inst/doc/plinkQC.Rmd | 16 +- inst/doc/plinkQC.pdf |binary man/ancestry_prediction.Rd | 17 +- man/checkRF_path.Rd |only man/check_het_and_miss.Rd | 5 man/check_relatedness.Rd | 5 man/check_sex.Rd | 5 man/convert_from_vcf.Rd |only man/evaluate_ancestry_prediction.Rd | 13 + man/evaluate_check_het_and_miss.Rd | 5 man/evaluate_check_relatedness.Rd | 5 man/evaluate_check_sex.Rd | 5 man/perIndividualQC.Rd | 9 - man/rename_variant_identifiers.Rd | 6 man/run_ancestry_format.Rd | 9 - man/run_ancestry_prediction.Rd | 6 tests/testthat/Rplots.pdf |binary vignettes/AncestryCheck.Rmd | 41 +++-- vignettes/plinkQC.Rmd | 16 +- 31 files changed, 637 insertions(+), 161 deletions(-)
Title: The gamma-OMP Feature Selection Algorithm
Description: The gamma-Orthogonal Matching Pursuit (gamma-OMP) is a recently suggested modification of the OMP feature selection algorithm for a wide range of response variables. The package offers many alternative regression models, such linear, robust, survival, multivariate etc., including k-fold cross-validation. References: Tsagris M., Papadovasilakis Z., Lakiotaki K. and Tsamardinos I. (2018). "Efficient feature selection on gene expression data: Which algorithm to use?" BioRxiv. <doi:10.1101/431734>. Tsagris M., Papadovasilakis Z., Lakiotaki K. and Tsamardinos I. (2022). "The gamma-OMP algorithm for feature selection with application to gene expression data". IEEE/ACM Transactions on Computational Biology and Bioinformatics 19(2): 1214--1224. <doi:10.1109/TCBB.2020.3029952>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between gomp versions 1.0 dated 2025-01-20 and 1.1 dated 2026-03-27
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NAMESPACE | 2 +- R/boot.gomp.R | 4 ++-- man/gomp-package.Rd | 4 ++-- 5 files changed, 15 insertions(+), 15 deletions(-)
Title: Geographically Optimal Similarity
Description: Understanding spatial association is essential for spatial
statistical inference, including factor exploration and spatial prediction.
Geographically optimal similarity (GOS) model is an effective method
for spatial prediction, as described in Yongze Song (2022)
<doi:10.1007/s11004-022-10036-8>. GOS was developed based on
the geographical similarity principle, as described in Axing Zhu (2018)
<doi:10.1080/19475683.2018.1534890>. GOS has advantages in
more accurate spatial prediction using fewer samples and
critically reduced prediction uncertainty.
Author: Yongze Song [aut, cph] ,
Wenbo Lyu [aut, cre]
Maintainer: Wenbo Lyu <lyu.geosocial@gmail.com>
Diff between geosimilarity versions 3.8 dated 2025-09-22 and 3.9 dated 2026-03-27
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/zzz.R | 2 +- build/vignette.rds |binary inst/CITATION | 32 ++++++++++++++++---------------- inst/doc/geosimilarity.html | 5 +++-- 7 files changed, 36 insertions(+), 31 deletions(-)
Title: Distance Covariance and Correlation for Time Series Analysis
Description: Computing and plotting the distance covariance and correlation function of a univariate or a multivariate time series. Both versions of biased and unbiased estimators of distance covariance and correlation are provided. Test statistics for testing pairwise independence are also implemented. Some data sets are also included. References include:
a) Edelmann Dominic, Fokianos Konstantinos and Pitsillou Maria (2019). 'An Updated Literature Review of Distance Correlation and Its Applications to Time Series'. International Statistical Review, 87(2): 237--262. <doi:10.1111/insr.12294>.
b) Fokianos Konstantinos and Pitsillou Maria (2018). 'Testing independence for multivariate time series via the auto-distance correlation matrix'. Biometrika, 105(2): 337--352. <doi:10.1093/biomet/asx082>.
c) Fokianos Konstantinos and Pitsillou Maria (2017). 'Consistent testing for pairwise dependence in time series'. Technometrics, 59(2): 262--270. <doi:10.1080/00401706.2016.1156024>.
d) Pits [...truncated...]
Author: Michail Tsagris [aut, cre],
Maria Pitsillou [aut, cph],
Konstantinos Fokianos [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between dCovTS versions 1.4 dated 2023-09-28 and 1.5 dated 2026-03-27
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- NAMESPACE | 6 ++++-- R/OrdinaryBoot.R | 6 +++--- R/OrdinaryBoot1.R | 4 ++-- R/OrdinaryBoot2.R | 4 ++-- R/OrdinaryBootCV.R | 4 ++-- R/RbootCV.R | 9 +++++---- R/TstarBoot.R | 11 ++++++----- R/TstarBoot1.R | 6 +++--- R/TstarBoot2.R | 6 +++--- R/mOrdinaryBootCV.R | 6 +++--- R/mRbootCV.R | 8 ++++---- man/dCovTS-package.Rd | 4 ++-- 14 files changed, 57 insertions(+), 53 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-21 0.11.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-28 0.7.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-13 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-06 0.7.7
Title: Large Language Model (LLM) Tools for Psychological Text Analysis
Description: A collection of large language model (LLM) text analysis methods
designed with psychological data in mind. Currently, LLMing (aka "lemming")
includes a text anomaly detection method based on the angle-based subspace
approach described by Zhang, Lin, and Karim (2015) and a text generation method.
<doi:10.1016/j.ress.2015.05.025>.
Author: Lindley Slipetz [aut, cre],
Teague Henry [aut],
Siqi Sun [ctb]
Maintainer: Lindley Slipetz <ddj6tu@virginia.edu>
Diff between LLMing versions 1.2.0 dated 2026-03-22 and 1.2.1 dated 2026-03-27
DESCRIPTION | 6 +-- MD5 | 14 ++++---- NAMESPACE | 1 NEWS.md | 4 +- R/text_datagen.R | 81 ++++++++++++++++------------------------------------ README.md | 18 +++++++---- build/partial.rdb |binary man/text_datagen.Rd | 77 +++++++++++++++---------------------------------- 8 files changed, 73 insertions(+), 128 deletions(-)
Title: Making Visual Exploratory Data Analysis with Nested Data Easier
Description: Provides tools for visual exploratory data analysis with nested
data. Includes functions for creating bivariate plots, dot plots,
histograms, and violin plots for each group or unit in nested data.
Methods are described in Crabtree and Nelson (2017) "Plotrr: Functions for
making visual exploratory data analysis with nested data easier"
<doi:10.21105/joss.00190>.
Author: Charles Crabtree [aut, cre],
Michael J. Nelson [aut]
Maintainer: Charles Crabtree <charles.crabtree@monash.edu>
This is a re-admission after prior archival of version 1.0.0 dated 2017-12-04
Diff between plotrr versions 1.0.0 dated 2017-12-04 and 1.0.2 dated 2026-03-27
DESCRIPTION | 24 + LICENSE | 3 MD5 | 48 +-- R/bivarplots.r | 2 R/bivarrugplot.r | 2 R/clear.r | 5 R/dotplots.r | 2 R/histplots.r | 2 R/lengthunique.r | 2 R/makefacnum.r | 2 R/violinplots.r | 2 README.md | 24 + build/vignette.rds |binary inst/doc/plotrr-vignette.R | 10 inst/doc/plotrr-vignette.Rmd | 2 inst/doc/plotrr-vignette.html | 554 ++++++++++++++++++++++++++++++++++-------- man/bivarplots.Rd | 2 man/bivarrugplot.Rd | 2 man/clear.Rd | 7 man/dotplots.Rd | 2 man/histplots.Rd | 2 man/lengthunique.Rd | 2 man/makefacnum.Rd | 2 man/violinplots.Rd | 2 vignettes/plotrr-vignette.Rmd | 2 25 files changed, 544 insertions(+), 163 deletions(-)
Title: Conditional Visualization for Statistical Models
Description: Exploring fitted models by interactively taking 2-D and 3-D
sections in data space.
Author: Mark O'Connell [aut, cre],
Catherine Hurley [aut],
Katarina Domijan [aut],
Achim Zeileis [ctb] ,
R Core Team [ctb]
Maintainer: Mark O'Connell <mark_ajoc@yahoo.ie>
This is a re-admission after prior archival of version 0.5-1 dated 2018-09-13
Diff between condvis versions 0.5-1 dated 2018-09-13 and 0.5-2 dated 2026-03-27
DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ NEWS | 4 ++++ R/ceplot.R | 2 +- R/condtour.R | 2 +- README.md | 23 +++++++++++------------ man/condvis-package.Rd | 4 ++-- 7 files changed, 32 insertions(+), 29 deletions(-)
Title: Access to the List of Bird Species of Peru
Description: Provides access to the species checklist published in
'List of the Birds of Peru' by Plenge, M. A. and Angulo, F.
(version 23-03-2026) <https://sites.google.com/site/boletinunop/checklist>.
The package exposes the current Peru bird checklist as an R dataset and
includes tools for species lookup, taxonomic reconciliation, and fuzzy
matching of scientific names. These features help streamline taxonomic
validation for researchers and conservationists.
Author: Paul E. Santos Andrade [aut, cre, cph]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
Diff between avesperu versions 0.1.0 dated 2026-03-23 and 0.1.1 dated 2026-03-27
DESCRIPTION | 12 +++-- MD5 | 30 +++++++++----- R/aves_peru_2025_v5.R | 7 ++- R/aves_peru_2026_v1.R |only R/get_avesperu.R | 2 R/internals.R | 4 - R/shiny-app.R | 6 +- README.md | 64 +++++++++++++++---------------- build |only data/aves_peru_2026_v1.rda |only inst/doc |only man/aves_peru_2025_v5.Rd | 7 ++- man/aves_peru_2026_v1.Rd |only man/figures/README-unnamed-chunk-3-1.png |binary man/unop_check_update.Rd | 2 tests/testthat.R | 8 +-- tests/testthat/test-unop-check-update.R | 8 +-- vignettes |only 18 files changed, 84 insertions(+), 66 deletions(-)
Title: Recursive Partitioning and Regression Trees
Description: Recursive partitioning for classification,
regression and survival trees. An implementation of most of the
functionality of the 1984 book by Breiman, Friedman, Olshen and Stone.
Author: Terry Therneau [aut],
Beth Atkinson [aut, cre],
Brian Ripley [trl]
Maintainer: Beth Atkinson <atkinson@mayo.edu>
Diff between rpart versions 4.1.24 dated 2025-01-07 and 4.1.27 dated 2026-03-27
ChangeLog | 1 DESCRIPTION | 10 ++++---- MD5 | 54 ++++++++++++++++++++++++--------------------- build/vignette.rds |binary data/solder.rda |binary inst/doc/longintro.pdf |binary inst/doc/usercode.pdf |binary po/R-es.po |only po/R-pt_BR.po |only po/R-ru.po | 33 ++++++++++++++++++++------- po/es.po |only po/pt_BR.po |only src/node.h | 2 - src/rpart_callback.c | 34 +++++++++++++++++----------- tests/testall.R | 8 +++--- tests/testall.Rout.save | 16 ++++++------- tests/treble.R | 6 ++--- tests/treble.Rout.save | 14 +++++------ tests/treble2.R | 4 +-- tests/treble2.Rout.save | 12 +++++----- tests/treble3.R | 4 +-- tests/treble3.Rout.save | 12 +++++----- tests/treble4.R | 4 +-- tests/treble4.Rout.save | 12 +++++----- tests/usersplits.R | 2 - tests/usersplits.Rout.save | 10 ++++---- tests/xpred1.R | 2 - tests/xpred1.Rout.save | 10 ++++---- tests/xpred2.R | 2 - tests/xpred2.Rout.save | 10 ++++---- 30 files changed, 146 insertions(+), 116 deletions(-)
Title: Noncompartmental Analysis for Pharmacokinetic Data
Description: Conduct a noncompartmental analysis with industrial strength.
Some features are
1) Use of CDISC SDTM terms
2) Automatic or manual slope selection
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut, cre]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between NonCompart versions 0.7.1 dated 2026-03-09 and 0.7.2 dated 2026-03-27
DESCRIPTION | 11 ++++++----- MD5 | 14 +++++++------- R/gIntAUC.R | 5 +++-- R/tblNCA.R | 10 ++++++++-- inst/NEWS.Rd | 11 ++++++----- man/BestSlope.Rd | 4 ++-- man/sNCA.Rd | 8 ++++---- man/tblNCA.Rd | 4 ++-- 8 files changed, 38 insertions(+), 29 deletions(-)
Title: Lambert-W Function
Description: Implements both real-valued branches of the Lambert-W function
(Corless et al, 1996) <doi:10.1007/BF02124750> without the need for
installing the entire GSL.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between lamW versions 2.2.6 dated 2026-01-08 and 2.2.7 dated 2026-03-27
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/partial.rdb |binary inst/CITATION | 2 +- inst/NEWS.Rd | 11 ++++++++++- src/RcppExports.cpp | 4 ++-- 6 files changed, 22 insertions(+), 13 deletions(-)
Title: Calibration Performance
Description: Plots calibration curves and computes statistics for assessing calibration performance. See Lasai et al. (2025) <doi:10.48550/arXiv.2503.08389>, De Cock Campo (2023) <doi:10.48550/arXiv.2309.08559> and Van Calster et al. (2016) <doi:10.1016/j.jclinepi.2015.12.005>.
Author: Bavo De Cock [aut, cre],
Lasai Barrenada [aut],
Daan Nieboer [aut],
Ben Van Calster [aut],
Ewout Steyerberg [aut],
Yvonne Vergouwe [aut]
Maintainer: Bavo De Cock <bavo.decock@kuleuven.be>
Diff between CalibrationCurves versions 3.0.0 dated 2025-12-09 and 3.1.0 dated 2026-03-27
DESCRIPTION | 41 ++-- MD5 | 61 ++++-- NAMESPACE | 124 +++++++++---- NEWS.md |only R/BT.samples.R | 2 R/CGC.R | 26 +- R/CalibrationCurves-package.R |only R/MAC2.R | 58 ++++-- R/MIXC.R | 16 + R/genCalCurve.R | 14 - R/globals.R | 3 R/helperFunctions.R | 22 ++ R/printFunction.R | 5 R/timeROC_archived.R |only R/val.prob.ci.2.R | 23 +- R/valProbCluster.R | 126 ++++++++++--- R/valProbSurvival.R | 369 ++++++++++++++++++++-------------------- R/valProbggplot.R | 54 +++-- README.md | 4 inst/doc/CalibrationCurves.R | 13 + inst/doc/CalibrationCurves.Rmd | 29 +++ inst/doc/CalibrationCurves.html | 68 ++++++- man/CalibrationCurves.Rd | 111 ++++++------ man/ci_pi_labels.Rd |only man/genCalCurve.Rd | 320 +++++++++++++++++----------------- man/timeROC.Rd |only man/valProbCluster.Rd | 20 +- man/valProbSurvival.Rd | 311 +++++++++++++++++---------------- tests |only vignettes/CalibrationCurves.Rmd | 29 +++ 30 files changed, 1120 insertions(+), 729 deletions(-)
More information about CalibrationCurves at CRAN
Permanent link
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'DDIwR', 'QCA' and 'venn'.
Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts
information (set names, set values) from those expressions. Other functions
perform various other checks if possibly numeric (even if all numbers reside
in a character vector) and coerce to numeric, or check if the numbers are
whole. It also offers, among many others, a highly versatile recoding
routine and some more flexible alternatives to the base functions 'with()'
and 'within()'.
SOP simplification functions in this package use related minimization from
package 'QCA', which is recommended to be installed despite not being listed
in the Imports field, due to circular dependency issues.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.39 dated 2025-11-02 and 0.40 dated 2026-03-27
DESCRIPTION | 13 - MD5 | 206 ++++++++++---------- NAMESPACE | 269 +++++++++++++------------- R/SOPexpression.R |only R/admisc_internal.R |only R/admisc_package.R |only R/asNumeric.R | 97 +++++++++ R/asSOP.R | 3 R/betweenQuotes.R | 31 ++- R/brackets.R | 86 ++++++++ R/change.R | 54 +++++ R/checkMV.R | 3 R/checkSubset.R | 3 R/checkValid.R | 3 R/classify.R | 11 - R/coerceMode.R | 35 +++ R/combnk.R | 103 +++++----- R/compute.R | 4 R/dimnames.R | 43 ++++ R/equality.R | 73 +++++++ R/expand.R | 3 R/export.R | 55 +++++ R/factorize.R | 85 ++++++++ R/frelevel.R | 38 +++ R/frev.R | 43 ++++ R/getInfo.R | 3 R/getLevels.R | 3 R/getMatrix.R | 3 R/getName.R | 70 ++++++ R/hclr.R | 53 +++++ R/inside.R | 63 ++++++ R/intersection.R | 109 ++++++++++ R/invert.R | 117 +++++++++++ R/listRDA.R | 46 ++++ R/mvSOP.R | 3 R/numdec.R | 43 ++++ R/objRDA.R | 3 R/onLoad.R | 2 R/overwrite.R | 91 ++++++++- R/pad.R | 5 R/permutations.R | 31 ++- R/possibleNumeric.R | 3 R/prettyString.R | 4 R/prettyTable.R | 4 R/print.R | 8 R/recode.R | 182 +++++++++++++++++- R/recreate.R | 82 ++++++++ R/reload.R | 3 R/replaceText.R | 63 ++++++ R/scan.clipboard.R | 28 ++ R/simplify.R | 38 ++- R/sopos.R | 2 R/sortExpressions.R | 3 R/stopError.R | 3 R/string.R | 13 + R/tagged.R | 6 R/tilde.R | 52 +++++ R/translate.R | 6 R/tryCatchWEM.R | 52 ++++- R/unicode.R | 7 R/uninstall.R | 3 R/unload.R | 3 R/update.R | 3 R/using.R | 149 +++++++++++++- R/validateNames.R | 4 R/verify.R | 3 R/wholeNumeric.R | 3 R/write.clipboard.R | 3 R/writePIs.R | 4 build/partial.rdb |binary inst/ChangeLog | 5 man/SOPexpression.Rd | 493 +++++++++++++++++++++++-------------------------- man/admisc_internal.Rd | 18 - man/admisc_package.Rd | 52 +---- man/betweenQuotes.Rd | 6 man/brackets.Rd | 125 +++++------- man/change.Rd | 12 - man/clipboard.Rd | 52 ++--- man/coerceMode.Rd | 6 man/combnk.Rd | 6 man/dimnames.Rd | 9 man/equality.Rd | 8 man/export.Rd | 100 ++++----- man/factorize.Rd | 192 +++++++++---------- man/frelevel.Rd | 10 man/frev.Rd | 9 man/getName.Rd | 6 man/hclr.Rd | 9 man/inside.Rd | 118 +++++------ man/intersection.Rd | 215 ++++++++++----------- man/invert.Rd | 226 +++++++++++----------- man/numdec.Rd | 6 man/numerics.Rd | 8 man/overwrite.Rd | 55 ++++- man/permutations.Rd | 58 ++--- man/rdaFunctions.Rd | 88 ++++---- man/recode.Rd | 356 +++++++++++++++++------------------ man/recreate.Rd | 5 man/replaceText.Rd | 6 man/tilde.Rd | 8 man/tryCatchWEM.Rd | 11 - man/using.Rd | 6 src/Makevars |only src/Makevars.win |only src/admisc.c | 19 + src/admisc.h |only src/utils.c |only src/utils.h |only 108 files changed, 3405 insertions(+), 1538 deletions(-)
Title: Build Tables in the OMOP Common Data Model
Description: Provides functionality to construct standardised tables from health
care data formatted according to the Observational Medical Outcomes
Partnership (OMOP) Common Data Model. The package includes tools to build
key tables such as observation period and drug era, among others.
Author: Marti Catala [aut, cre] ,
Elin Rowlands [ctb] ,
Cecilia Campanile [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between OmopConstructor versions 0.2.0 dated 2026-02-09 and 0.3.0 dated 2026-03-26
DESCRIPTION | 6 MD5 | 48 NAMESPACE | 17 NEWS.md | 25 R/OmopConstructor-package.R | 18 R/buildAchilles.R |only R/buildObservationPeriod.R | 606 ++--- R/collapseRecords.R | 284 +- R/sysdata.rda |only README.md | 238 +- build/vignette.rds |binary inst/doc/achilles.R |only inst/doc/achilles.Rmd |only inst/doc/achilles.html |only inst/doc/buildObservationPeriod.R | 612 ++--- inst/doc/buildObservationPeriod.Rmd | 878 +++---- inst/doc/buildObservationPeriod.html | 3074 +++++++++++++-------------- man/OmopConstructor-package.Rd | 58 man/buildAchillesTables.Rd |only man/buildDrugEra.Rd | 70 man/buildObservationPeriod.Rd | 88 man/collapseRecords.Rd | 78 tests/testthat.R | 24 tests/testthat/setup.R | 142 - tests/testthat/test-buildAchilles.R |only tests/testthat/test-buildObservationPeriod.R | 984 ++++---- tests/testthat/test-collapseRecords.R | 394 +-- vignettes/achilles.Rmd |only vignettes/buildObservationPeriod.Rmd | 878 +++---- 29 files changed, 4269 insertions(+), 4253 deletions(-)
More information about OmopConstructor at CRAN
Permanent link
Title: Noncompartmental Analysis for Pharmacokinetic Report
Description: Conduct a noncompartmental analysis with industrial strength.
Some features are
1) CDISC SDTM terms
2) Automatic or manual slope selection
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
5) Produce pdf, rtf, text report files.
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut, cre]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between ncar versions 0.5.0 dated 2023-11-19 and 0.5.1 dated 2026-03-26
ncar-0.5.0/ncar/inst/doc |only ncar-0.5.1/ncar/DESCRIPTION | 16 ++++++++++------ ncar-0.5.1/ncar/MD5 | 23 +++++++++++------------ ncar-0.5.1/ncar/R/BasicUtil.R | 2 +- ncar-0.5.1/ncar/R/Res2Txt.R | 6 +++--- ncar-0.5.1/ncar/R/pdfNCA.R | 22 ++++++++++++++-------- ncar-0.5.1/ncar/R/rtfNCA.R | 22 ++++++++++++++-------- ncar-0.5.1/ncar/inst/NEWS.Rd | 6 ++++++ ncar-0.5.1/ncar/man/Res2Txt.Rd | 8 ++++---- ncar-0.5.1/ncar/man/RptCfg.Rd | 4 ++-- ncar-0.5.1/ncar/man/pdfNCA.Rd | 4 ++-- ncar-0.5.1/ncar/man/rtfNCA.Rd | 4 ++-- ncar-0.5.1/ncar/man/txtNCA.Rd | 4 ++-- 13 files changed, 71 insertions(+), 50 deletions(-)
Title: Changepoint Additive Models for Time Series Omics Data
Description: Provides a comprehensive framework for time series omics analysis,
integrating changepoint detection, smooth and shape-constrained trends,
and uncertainty quantification. It supports gene- and transcript-level inferences,
p-value aggregation for improved power, and both case-only and case-control designs.
It includes an interactive 'shiny' interface. The methods are described in Yates et al. (2024) <doi:10.1101/2024.12.22.630003>.
Author: Luke Yates [aut, cre, cph] ,
Michael Charleston [aut],
Jazmine Humphreys [aut],
Steven Smith [aut]
Maintainer: Luke Yates <luke.yates@utas.edu.au>
Diff between cpam versions 0.2.0 dated 2026-03-03 and 0.2.1 dated 2026-03-26
cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-1_70430fbb23ba930c48d14d686cdcad61.RData |only cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-1_70430fbb23ba930c48d14d686cdcad61.rdb |only cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-1_70430fbb23ba930c48d14d686cdcad61.rdx |only cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-2_9a0a18756a1afaf6860cd029d4db4dda.RData |only cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-2_9a0a18756a1afaf6860cd029d4db4dda.rdb |only cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-2_9a0a18756a1afaf6860cd029d4db4dda.rdx |only cpam-0.2.1/cpam/DESCRIPTION | 6 - cpam-0.2.1/cpam/MD5 | 32 ++++---- cpam-0.2.1/cpam/NAMESPACE | 1 cpam-0.2.1/cpam/NEWS.md | 8 ++ cpam-0.2.1/cpam/R/compute_p_values.R | 5 + cpam-0.2.1/cpam/R/estimate_changepoint.R | 12 ++- cpam-0.2.1/cpam/R/lancaster.R | 26 ++++++ cpam-0.2.1/cpam/inst/doc/cpam.html | 2 cpam-0.2.1/cpam/man/estimate_changepoint.Rd | 6 + cpam-0.2.1/cpam/man/lancaster.Rd |only cpam-0.2.1/cpam/tests/testthat/test-compute_p_values.R | 40 ++++++++++ cpam-0.2.1/cpam/tests/testthat/test-lancaster.R |only cpam-0.2.1/cpam/vignettes/cpam_cache/html/clusters-1_1e3cf3b15986965fb46b537e0c61c25d.RData |only cpam-0.2.1/cpam/vignettes/cpam_cache/html/clusters-1_1e3cf3b15986965fb46b537e0c61c25d.rdb |only cpam-0.2.1/cpam/vignettes/cpam_cache/html/clusters-1_1e3cf3b15986965fb46b537e0c61c25d.rdx |only cpam-0.2.1/cpam/vignettes/cpam_cache/html/clusters-2_235eb6a37161d5e8781d8956d06bdb82.RData |only cpam-0.2.1/cpam/vignettes/cpam_cache/html/clusters-2_235eb6a37161d5e8781d8956d06bdb82.rdb |only cpam-0.2.1/cpam/vignettes/cpam_cache/html/clusters-2_235eb6a37161d5e8781d8956d06bdb82.rdx |only 24 files changed, 115 insertions(+), 23 deletions(-)
Title: Methods for Optimizing Scales of Effect
Description: A tool for optimizing scales of effect when modeling ecological processes in space. Specifically, the scale parameter of a distance-weighted kernel distribution is identified for all environmental layers included in the model. Includes functions to assist in model selection, model evaluation, efficient transformation of raster surfaces using fast Fourier transformation, and projecting models. For more details see Peterman (2026) <doi:10.1007/s10980-025-02267-x>.
Author: Bill Peterman [aut, cre]
Maintainer: Bill Peterman <Peterman.73@osu.edu>
Diff between multiScaleR versions 0.4.5 dated 2025-09-02 and 0.5.0 dated 2026-03-26
DESCRIPTION | 12 MD5 | 28 +- NEWS | 11 R/fft_smooth.R | 91 ++++-- R/kernel_scale.raster.R | 147 +++++++++- R/kernel_scale_fn.R | 5 R/multiScale_optim.R | 188 +++++-------- build/vignette.rds |binary inst/doc/multiScaleR_Guide.Rmd | 4 inst/doc/multiScaleR_Guide.html | 404 +++++++++++++++--------------- inst/doc/spatial_projection_clamping.R |only inst/doc/spatial_projection_clamping.Rmd |only inst/doc/spatial_projection_clamping.html |only man/fft_convolution.Rd | 4 man/kernel_scale.raster.Rd | 57 +++- vignettes/multiScaleR_Guide.Rmd | 4 vignettes/spatial_projection_clamping.Rmd |only 17 files changed, 558 insertions(+), 397 deletions(-)
Title: Multivariate Hypothesis Tests
Description: Hypothesis tests for multivariate data. Tests for one and two mean vectors, multivariate analysis of variance, tests for one, two or more covariance matrices. References include: Mardia K.V., Kent J.T. and Bibby J.M. (1979). Multivariate Analysis. ISBN: 978-0124712522. London: Academic Press.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between mvhtests versions 1.1 dated 2025-01-09 and 1.2 dated 2026-03-26
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 3 ++- R/eel.test1.R | 2 +- R/eel.test2.R | 4 ++-- R/el.test1.R | 4 ++-- R/el.test2.R | 8 ++++---- R/hotel1T2.R | 2 +- R/hotel2T2.R | 4 ++-- R/james.R | 4 ++-- man/mvhtests-package.Rd | 4 ++-- 11 files changed, 34 insertions(+), 32 deletions(-)
Title: Meta-Population Compartmental Model for Respiratory Virus
Diseases
Description: Simulates respiratory virus epidemics using meta-population compartmental models following Fadikar et. al. (2025) <doi:10.1109/WSC68292.2025.11338996>. 'MetaRVM' implements a stochastic
SEIRD (Susceptible-Exposed-Infected-Recovered-Dead) framework with demographic
stratification by user provided attributes. It supports complex
epidemiological scenarios including asymptomatic and presymptomatic transmission,
hospitalization dynamics, vaccination schedules, and time-varying contact patterns
via mixing matrices.
Author: Arindam Fadikar [aut, cre, cph] ,
Charles Macal [ctb],
Martinez Moyano Ignacio Javier [ctb],
Ozik Jonathan [ctb]
Maintainer: Arindam Fadikar <afadikar@anl.gov>
Diff between MetaRVM versions 2.0.0 dated 2026-03-19 and 2.1.0 dated 2026-03-26
DESCRIPTION | 6 MD5 | 61 ++--- NEWS.md | 30 ++ R/classes.R | 203 ++++++++++++------- R/metaODIN.R | 57 ++++- R/metaRVM.R | 130 ++++++++---- R/parse_config.R | 56 ++++- README.md | 32 ++- inst/doc/checkpointing.Rmd | 17 - inst/doc/checkpointing.html | 17 - inst/doc/getting-started.Rmd | 11 - inst/doc/getting-started.html | 56 ++--- inst/doc/running-a-simulation.R | 17 - inst/doc/running-a-simulation.Rmd | 74 +++++- inst/doc/running-a-simulation.html | 266 +++++++++++++------------ inst/doc/yaml-configuration.Rmd | 85 +++++++ inst/doc/yaml-configuration.html | 134 +++++++++--- inst/extdata/example_config.yaml | 1 inst/extdata/example_config_checkpoint.yaml | 1 inst/extdata/example_config_dist.yaml | 1 inst/extdata/example_config_stochastic.yaml |only inst/extdata/example_config_subgroup_dist.yaml | 1 man/MetaRVMResults.Rd | 50 ++++ man/figures/README-unnamed-chunk-3-1.png |binary man/parse_config.Rd | 5 tests/testthat/test-metaRVM.R | 161 +++++++++++++++ tests/testthat/test-parse_config.R | 92 ++++++++ vignettes/checkpointing.Rmd | 17 - vignettes/getting-started.Rmd | 11 - vignettes/plot-1.png |binary vignettes/running-a-simulation.Rmd | 74 +++++- vignettes/yaml-configuration.Rmd | 85 +++++++ 32 files changed, 1311 insertions(+), 440 deletions(-)
Title: Superefficient Estimation of Future Conditional Hazards Based on
Marker Information
Description: Provides univariate and indexed (multivariate) nonparametric smoothed kernel estimators for the future conditional hazard rate function when time-dependent covariates are present, a bandwidth selector for the estimator's implementation and pointwise and uniform confidence bands. Methods used in the package refer to Bagkavos, Isakson, Mammen, Nielsen and Proust-Lima (2025) <doi:10.1093/biomet/asaf008>.
Author: Dimitrios Bagkavos [aut, cre],
Alex Isakson [ctb],
Enno Mammen [ctb],
Jens Nielsen [ctb],
Cecile Proust-Lima [ctb]
Maintainer: Dimitrios Bagkavos <dimitrios.bagkavos@gmail.com>
Diff between HQM versions 2.0 dated 2026-01-07 and 2.1 dated 2026-03-26
DESCRIPTION | 8 ++++---- MD5 | 14 ++++++++++---- NAMESPACE | 4 ++-- R/Compute.iid.KM.R |only R/compute_iid_decomposition.R |only R/timeRoc.R |only build/partial.rdb |binary man/Compute.iid.KM.Rd |only man/auc.hqm.Rd | 1 - man/compute_iid_decomposition.Rd |only man/timeRoc.Rd |only 11 files changed, 16 insertions(+), 11 deletions(-)
Title: Fast and Light-Weight Energy Statistics
Description: Fast and memory-less computation of the energy statistics related quantities for vectors and matrices. References include: Szekely G. J. and Rizzo M. L. (2014), <doi:10.1214/14-AOS1255>. Szekely G. J. and Rizzo M. L. (2023), <ISBN:9781482242744>. Tsagris M. and Papadakis M. (2025). <doi:10.48550/arXiv.2501.02849>.
Author: Michail Tsagris [aut, cre],
Manos Papadakis [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between estats versions 1.0 dated 2025-11-04 and 1.1 dated 2026-03-26
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 5 +++-- R/adcov.R | 4 ++-- R/adcov.test.R | 2 +- R/dcov.test.R | 2 +- man/pdcor-package.Rd | 4 ++-- 7 files changed, 20 insertions(+), 19 deletions(-)
Title: B Cell Receptor Phylogenetics Toolkit
Description: Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees.
Provides methods to 1) reconstruct unmutated ancestral sequences,
2) build B cell phylogenetic trees using multiple methods,
3) visualize trees with metadata at the tips,
4) reconstruct intermediate sequences,
5) detect biased ancestor-descendant relationships among metadata types
Workflow examples available at documentation site (see URL).
Citations:
Hoehn et al (2022) <doi:10.1371/journal.pcbi.1009885>,
Hoehn et al (2021) <doi:10.1101/2021.01.06.425648>.
Author: Kenneth Hoehn [aut, cre],
Cole Jensen [aut],
Jessie Fielding [aut],
Hunter Melton [aut],
Susanna Marquez [ctb],
Jason Vander Heiden [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Kenneth Hoehn <kenneth.b.hoehn@dartmouth.edu>
Diff between dowser versions 2.4.0 dated 2025-10-14 and 2.4.1 dated 2026-03-26
DESCRIPTION | 20 +- MD5 | 114 +++++++------- NAMESPACE | 2 NEWS.md | 14 + R/Clones.R | 30 +-- R/Dowser.R | 2 R/Plotting.R | 132 ++++++++++++----- R/Statistics.R | 7 R/TimeTreesFunctions.R | 47 ++++-- R/TreeFunctions.R | 30 +++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/Building-Time-Trees-Vignette.R | 34 ++-- inst/doc/Building-Time-Trees-Vignette.Rmd | 28 +-- inst/doc/Building-Time-Trees-Vignette.pdf |binary inst/doc/Building-Trees-Vignette.R | 44 ++--- inst/doc/Building-Trees-Vignette.Rmd | 4 inst/doc/Building-Trees-Vignette.pdf |binary inst/doc/Discrete-Trait-Vignette.R | 16 +- inst/doc/Discrete-Trait-Vignette.Rmd | 8 - inst/doc/Discrete-Trait-Vignette.pdf |binary inst/doc/Germlines-Vignette.pdf |binary inst/doc/Measurable-Evolution.R | 14 - inst/doc/Measurable-Evolution.Rmd | 8 - inst/doc/Measurable-Evolution.pdf |binary inst/doc/NonB-Cell-Data.R | 24 +-- inst/doc/NonB-Cell-Data.Rmd | 2 inst/doc/NonB-Cell-Data.html | 10 - inst/doc/Plotting-Trees-Vignette.R | 214 +++++++++++++--------------- inst/doc/Plotting-Trees-Vignette.Rmd | 42 ++--- inst/doc/Plotting-Trees-Vignette.pdf |binary inst/doc/Quickstart-Vignette.R | 47 +++--- inst/doc/Quickstart-Vignette.Rmd | 9 - inst/doc/Quickstart-Vignette.pdf |binary inst/doc/Resolve-Light-Chains-Vignette.R | 27 +-- inst/doc/Resolve-Light-Chains-Vignette.Rmd | 13 - inst/doc/Resolve-Light-Chains-Vignette.pdf |binary inst/doc/Sequences-Vignette.R | 44 ++--- inst/doc/Sequences-Vignette.Rmd | 2 inst/doc/Sequences-Vignette.pdf |binary man/buildBeast.Rd | 3 man/buildIgphyml.Rd | 3 man/create_traitset.Rd | 5 man/getTimeTrees.Rd | 3 man/maskCodons.Rd | 6 man/maskSequences.Rd | 2 man/plotTrees.Rd | 11 + man/write_clone_to_xml.Rd | 3 man/write_clones_to_xmls.Rd | 3 vignettes/Building-Time-Trees-Vignette.Rmd | 28 +-- vignettes/Building-Trees-Vignette.Rmd | 4 vignettes/Discrete-Trait-Vignette.Rmd | 8 - vignettes/Measurable-Evolution.Rmd | 8 - vignettes/NonB-Cell-Data.Rmd | 2 vignettes/Plotting-Trees-Vignette.Rmd | 42 ++--- vignettes/Quickstart-Vignette.Rmd | 9 - vignettes/Resolve-Light-Chains-Vignette.Rmd | 13 - vignettes/Sequences-Vignette.Rmd | 2 58 files changed, 645 insertions(+), 498 deletions(-)
Title: R Client for the 'OMOPHub' Medical Vocabulary API
Description: Provides an R interface to the 'OMOPHub' API for accessing
'OHDSI ATHENA' standardized medical vocabularies. Supports concept search,
semantic search using neural embeddings, concept similarity, vocabulary
exploration, hierarchy navigation, relationship queries, and concept
mappings with automatic pagination and rate limiting.
Author: Alex Chen [aut, cre, cph],
Observational Health Data Science and Informatics [cph]
Maintainer: Alex Chen <alex@omophub.com>
Diff between omophub versions 1.4.0 dated 2026-02-23 and 1.5.0 dated 2026-03-26
DESCRIPTION | 6 - MD5 | 22 ++-- NEWS.md | 14 ++ R/search.R | 62 ++++++++++++- README.md | 25 +++++ inst/doc/getting-started.R | 30 ++++++ inst/doc/getting-started.Rmd | 47 +++++++++ inst/doc/getting-started.html | 147 +++++++++++++++++++------------ inst/examples/search_concepts.R | 73 +++++++++++++++ tests/testthat/test-search-integration.R | 73 +++++++++++++++ tests/testthat/test-search.R | 119 +++++++++++++++++++++++++ vignettes/getting-started.Rmd | 47 +++++++++ 12 files changed, 595 insertions(+), 70 deletions(-)
Title: Custom Legends with Statistical Comparison Brackets
Description: Add publication-quality custom legends with vertical brackets. Designed for displaying statistical comparisons between groups,
commonly used in scientific publications for showing significance levels.
Features include adaptive positioning, automatic bracket spacing for overlapping
comparisons, font family inheritance, and support for asterisks, p-values,
or custom labels. Compatible with 'ggplot2' graphics.
Author: Yoshiaki Sato [aut, cre]
Maintainer: Yoshiaki Sato <lascia333@gmail.com>
Diff between vbracket versions 1.3.2 dated 2026-03-24 and 1.4.0 dated 2026-03-26
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/ggplot_integration.R | 36 ++++++++++++++++++++++++++++++++++-- 3 files changed, 41 insertions(+), 9 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/> to get started.
Author: Robert J. Hijmans [cre, aut] ,
Andrew Brown [aut] ,
Marcia Barbosa [aut] ,
Roger Bivand [ctb] ,
Michael Chirico [ctb] ,
Emanuele Cordano [ctb] ,
Krzysztof Dyba [ctb] ,
Edzer Pebesma [ctb] ,
Barry Rowlingson [ctb] ,
Michael D. Sumner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.9-1 dated 2026-03-08 and 1.9-11 dated 2026-03-26
DESCRIPTION | 8 - MD5 | 68 +++++------ NEWS.md | 17 ++ R/extract.R | 32 ++++- R/ifelse.R | 5 R/plot_vector.R | 36 ++++-- R/sample.R | 6 - R/spatvec.R | 2 R/zonal.R | 12 ++ inst/tinytest/test_subst.R | 5 man/NAflag.Rd | 5 man/extract.Rd | 3 man/graticule.Rd | 2 man/plot.Rd | 6 - man/plot_graticule.Rd | 6 - man/project.Rd | 4 man/resample.Rd | 5 src/Makevars.ucrt | 2 src/RcppFunctions.cpp | 1 src/crs.cpp | 5 src/extract.cpp | 12 +- src/gdal_algs.cpp | 14 +- src/gdalio.cpp | 2 src/geos_methods.cpp | 260 ++++++++++++++++++--------------------------- src/geos_spat.h | 18 ++- src/raster_methods.cpp | 38 +++--- src/rasterize.cpp | 48 ++++---- src/read.cpp | 3 src/read_gdal.cpp | 59 +++------- src/read_ogr.cpp | 17 ++ src/spatRaster.cpp | 49 +++++++- src/spatRaster.h | 1 src/spatVector.cpp | 4 src/spatVector.h | 3 src/write_gdal.cpp | 1 35 files changed, 433 insertions(+), 326 deletions(-)
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] ,
Christophe Dervieux [aut] ,
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Richard Iannone [aut] ,
Andrew Dun [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 2.30 dated 2025-09-28 and 2.31 dated 2026-03-26
DESCRIPTION | 8 MD5 | 105 +++++----- NEWS.md | 10 R/beamer_presentation.R | 2 R/github_document.R | 2 R/html_document.R | 6 R/html_fragment.R | 2 R/html_vignette.R | 2 R/ioslides_presentation.R | 2 R/md_document.R | 2 R/odt_document.R | 2 R/output_format.R | 9 R/pandoc.R | 8 R/pdf_document.R | 2 R/render.R | 10 R/rtf_document.R | 2 R/slidy_presentation.R | 2 R/word_document.R | 2 README.md | 4 build/vignette.rds |binary inst/CITATION | 4 inst/doc/lua-filters.Rmd | 4 inst/doc/lua-filters.html | 6 inst/doc/rmarkdown.R | 4 inst/doc/rmarkdown.Rmd | 54 ++--- inst/doc/rmarkdown.html | 69 +++--- inst/rmarkdown/lua/shared.lua | 2 inst/rmarkdown/templates/html_vignette/resources/vignette.css | 3 inst/rmarkdown/templates/html_vignette/skeleton/skeleton.Rmd | 5 inst/rmd/h/anchor-sections/anchor-sections-icon.css | 2 inst/rmd/site/index.Rmd | 2 man/beamer_presentation.Rd | 4 man/context_document.Rd | 2 man/github_document.Rd | 2 man/html_document.Rd | 8 man/html_document_base.Rd | 2 man/html_fragment.Rd | 4 man/html_notebook.Rd | 2 man/html_vignette.Rd | 4 man/ioslides_presentation.Rd | 6 man/md_document.Rd | 4 man/odt_document.Rd | 2 man/output_format.Rd | 2 man/pdf_document.Rd | 4 man/powerpoint_presentation.Rd | 2 man/rtf_document.Rd | 2 man/slidy_presentation.Rd | 6 man/word_document.Rd | 4 tests/rmd/base64-pdf.Rmd |only tests/testrmd.R | 4 tests/testthat/test-lua-filters.R | 10 tests/testthat/test-pandoc.R | 9 vignettes/lua-filters.Rmd | 4 vignettes/rmarkdown.Rmd | 54 ++--- 54 files changed, 250 insertions(+), 228 deletions(-)
Title: Calculation of Comorbidity and Frailty Scores
Description: Computes comorbidity indices and combined frailty scores for multiple ICD coding systems, including ICD-10-CA, ICD-10-CM, and ICD-11. The package provides tools to preprocess episode data, map diagnosis codes to chronic categories, propagate conditions across episodes, and generate comorbidity and frailty measures. The methods implemented are original to this package and were developed by the authors for research applications; a manuscript describing the methodology is currently in preparation.
Author: Azadeh Bayani [aut, cre] ,
Jean Noel Nikiema [ctb],
Michele Bally [ctb]
Maintainer: Azadeh Bayani <azadeh.bayani@umontreal.ca>
Diff between LABTNSCPSS versions 1.0 dated 2026-02-20 and 1.0.2 dated 2026-03-26
LABTNSCPSS-1.0.2/LABTNSCPSS/DESCRIPTION | 13 - LABTNSCPSS-1.0.2/LABTNSCPSS/MD5 | 28 +- LABTNSCPSS-1.0.2/LABTNSCPSS/NAMESPACE | 8 LABTNSCPSS-1.0.2/LABTNSCPSS/R/Chronic_Pathologies.R |only LABTNSCPSS-1.0.2/LABTNSCPSS/R/Comorbidity_Frailty_Calculation.R |only LABTNSCPSS-1.0.2/LABTNSCPSS/R/Create_data.R |only LABTNSCPSS-1.0.2/LABTNSCPSS/R/Frailty_Calculation.R |only LABTNSCPSS-1.0.2/LABTNSCPSS/R/comorbidity-package.R | 2 LABTNSCPSS-1.0.2/LABTNSCPSS/R/package.R | 1 LABTNSCPSS-1.0.2/LABTNSCPSS/R/run_pipeline.R | 95 ++++++--- LABTNSCPSS-1.0.2/LABTNSCPSS/R/setup_package.R |only LABTNSCPSS-1.0.2/LABTNSCPSS/R/utils-pipe.R |only LABTNSCPSS-1.0.2/LABTNSCPSS/R/weights_map.R |only LABTNSCPSS-1.0.2/LABTNSCPSS/R/zzz.R | 38 ++- LABTNSCPSS-1.0.2/LABTNSCPSS/README.md | 104 +++------- LABTNSCPSS-1.0.2/LABTNSCPSS/inst/extdata |only LABTNSCPSS-1.0.2/LABTNSCPSS/man/Create_data.Rd |only LABTNSCPSS-1.0.2/LABTNSCPSS/man/chronic_pathologies.Rd |only LABTNSCPSS-1.0.2/LABTNSCPSS/man/reexports.Rd |only LABTNSCPSS-1.0.2/LABTNSCPSS/man/run_pipeline.Rd | 53 ++++- LABTNSCPSS-1.0/LABTNSCPSS/R/zzz_source_internal_code.R |only 21 files changed, 216 insertions(+), 126 deletions(-)
Title: Introduction to Sports Analytics using R (ISAR) Data
Description: We provide data sets used in the textbook "Introduction to Sports Analytics using R" by Elmore and Urbaczweski (2025).
Author: Ryan Elmore [cre, aut]
Maintainer: Ryan Elmore <Ryan.Elmore@du.edu>
Diff between ISAR versions 1.0.2 dated 2026-02-05 and 1.0.3 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 5 ++++- R/nba_nuggets_shots_2025.R |only data/nba_nuggets_shots_2025.rda |only man/nba_nuggets_shots_2025.Rd |only 5 files changed, 7 insertions(+), 4 deletions(-)
Title: Mitigating Spatial Bias Through Geographical Complexity
Description: The geographical complexity of individual variables can be characterized by the differences in local attribute variables, while the common geographical complexity of multiple variables can be represented by fluctuations in the similarity of vectors composed of multiple variables. In spatial regression tasks, the goodness of fit can be improved by incorporating a geographical complexity representation vector during modeling, using a geographical complexity-weighted spatial weight matrix, or employing local geographical complexity kernel density. Similarly, in spatial sampling tasks, samples can be selected more effectively by using a method that weights based on geographical complexity. By optimizing performance in spatial regression and spatial sampling tasks, the spatial bias of the model can be effectively reduced.
Author: Wenbo Lyu [aut, cre, cph] ,
Yongze Song [aut] ,
Zehua Zhang [aut]
Maintainer: Wenbo Lyu <lyu.geosocial@gmail.com>
Diff between geocomplexity versions 0.2.1 dated 2024-11-11 and 0.3.0 dated 2026-03-26
DESCRIPTION | 22 ++++++++++++---------- MD5 | 14 +++++++------- NEWS.md | 6 +++++- README.md | 1 + build/vignette.rds |binary inst/CITATION | 3 +-- inst/doc/gca.html | 5 +++-- inst/doc/gcc.html | 5 +++-- 8 files changed, 32 insertions(+), 24 deletions(-)
Title: Self-Controlled Case Series
Description: Execute the self-controlled case series (SCCS) design using observational
data in the OMOP Common Data Model. Extracts all necessary data from the database and
transforms it to the format required for SCCS. Age and season can be modeled
using splines assuming constant hazard within calendar months. Event-dependent
censoring of the observation period can be corrected for. Many exposures can be
included at once (MSCCS), with regularization on all coefficients except for the
exposure of interest. Includes diagnostics for all major assumptions of the SCCS.
Author: Martijn Schuemie [aut, cre],
Patrick Ryan [aut],
Trevor Shaddox [aut],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SelfControlledCaseSeries versions 6.1.1 dated 2025-10-28 and 6.1.4 dated 2026-03-26
SelfControlledCaseSeries-6.1.1/SelfControlledCaseSeries/src/Makevars |only SelfControlledCaseSeries-6.1.1/SelfControlledCaseSeries/src/Makevars.win |only SelfControlledCaseSeries-6.1.4/SelfControlledCaseSeries/DESCRIPTION | 8 - SelfControlledCaseSeries-6.1.4/SelfControlledCaseSeries/MD5 | 18 +--- SelfControlledCaseSeries-6.1.4/SelfControlledCaseSeries/NEWS.md | 25 +++++ SelfControlledCaseSeries-6.1.4/SelfControlledCaseSeries/R/RunAnalyses.R | 43 ++-------- SelfControlledCaseSeries-6.1.4/SelfControlledCaseSeries/R/SettingsObjects.R | 8 + SelfControlledCaseSeries-6.1.4/SelfControlledCaseSeries/inst/doc/MultipleAnalyses.pdf |binary SelfControlledCaseSeries-6.1.4/SelfControlledCaseSeries/inst/doc/ResultsSchema.pdf |binary SelfControlledCaseSeries-6.1.4/SelfControlledCaseSeries/inst/doc/SingleStudies.pdf |binary SelfControlledCaseSeries-6.1.4/SelfControlledCaseSeries/src/RcppWrapper.cpp | 4 11 files changed, 59 insertions(+), 47 deletions(-)
More information about SelfControlledCaseSeries at CRAN
Permanent link
Title: Generate PMML for Various Models
Description: The Predictive Model Markup Language (PMML) is an XML-based language which provides a way for applications to define machine learning, statistical and data mining models and to share models between PMML compliant applications. More information about the PMML industry standard and the Data Mining Group can be found at <https://dmg.org/>. The generated PMML can be imported into any PMML consuming application, such as Zementis Predictive Analytics products.
Author: Michael Hahsler [aut, cre],
Bruno Rodrigues [aut],
Dmitriy Bolotov [aut],
Tridivesh Jena [aut],
Graham Williams [aut],
Wen-Ching Lin [aut],
Hemant Ishwaran [aut],
Udaya B. Kogalur [aut],
Rajarshi Guha [aut],
Software AG [cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
This is a re-admission after prior archival of version 2.5.2 dated 2022-03-04
Diff between pmml versions 2.5.2 dated 2022-03-04 and 2.6.0 dated 2026-03-26
pmml-2.5.2/pmml/inst/WORDLIST |only pmml-2.5.2/pmml/man/figures/logo3.png |only pmml-2.6.0/pmml/DESCRIPTION | 35 pmml-2.6.0/pmml/MD5 | 140 - pmml-2.6.0/pmml/NEWS.md | 10 pmml-2.6.0/pmml/R/data-audit.R | 2 pmml-2.6.0/pmml/R/pmml-package.R | 9 pmml-2.6.0/pmml/R/pmml.ARIMA.R | 2 pmml-2.6.0/pmml/R/pmml.R | 6 pmml-2.6.0/pmml/R/pmml.ada.R | 2 pmml-2.6.0/pmml/R/pmml.coxph.R | 2 pmml-2.6.0/pmml/R/pmml.cv.glmnet.R | 2 pmml-2.6.0/pmml/R/pmml.gbm.R | 2 pmml-2.6.0/pmml/R/pmml.glm.R | 2 pmml-2.6.0/pmml/R/pmml.hclust.R | 2 pmml-2.6.0/pmml/R/pmml.iForest.R | 2 pmml-2.6.0/pmml/R/pmml.itemsets.R | 2 pmml-2.6.0/pmml/R/pmml.kmeans.R | 2 pmml-2.6.0/pmml/R/pmml.ksvm.R | 2 pmml-2.6.0/pmml/R/pmml.lm.R | 2 pmml-2.6.0/pmml/R/pmml.multinom.R | 2 pmml-2.6.0/pmml/R/pmml.naiveBayes.R | 2 pmml-2.6.0/pmml/R/pmml.neighbr.R | 4 pmml-2.6.0/pmml/R/pmml.nnet.R | 2 pmml-2.6.0/pmml/R/pmml.randomForest.R | 2 pmml-2.6.0/pmml/R/pmml.rpart.R | 2 pmml-2.6.0/pmml/R/pmml.rules.R | 16 pmml-2.6.0/pmml/R/pmml.svm.R | 4 pmml-2.6.0/pmml/R/pmml.xgb.Booster.R | 43 pmml-2.6.0/pmml/README.md | 132 + pmml-2.6.0/pmml/build/vignette.rds |binary pmml-2.6.0/pmml/inst/doc/packages_and_functions.Rmd | 2 pmml-2.6.0/pmml/inst/doc/packages_and_functions.html | 330 ++- pmml-2.6.0/pmml/inst/doc/xform_function.R | 4 pmml-2.6.0/pmml/inst/doc/xform_function.Rmd | 4 pmml-2.6.0/pmml/inst/doc/xform_function.html | 1057 ++++++---- pmml-2.6.0/pmml/man/audit.Rd | 2 pmml-2.6.0/pmml/man/figures/logo.png |only pmml-2.6.0/pmml/man/pmml-package.Rd | 21 pmml-2.6.0/pmml/man/pmml.ARIMA.Rd | 2 pmml-2.6.0/pmml/man/pmml.Rd | 6 pmml-2.6.0/pmml/man/pmml.ada.Rd | 2 pmml-2.6.0/pmml/man/pmml.coxph.Rd | 2 pmml-2.6.0/pmml/man/pmml.cv.glmnet.Rd | 2 pmml-2.6.0/pmml/man/pmml.gbm.Rd | 2 pmml-2.6.0/pmml/man/pmml.glm.Rd | 2 pmml-2.6.0/pmml/man/pmml.hclust.Rd | 2 pmml-2.6.0/pmml/man/pmml.iForest.Rd | 2 pmml-2.6.0/pmml/man/pmml.kmeans.Rd | 2 pmml-2.6.0/pmml/man/pmml.ksvm.Rd | 2 pmml-2.6.0/pmml/man/pmml.lm.Rd | 2 pmml-2.6.0/pmml/man/pmml.multinom.Rd | 2 pmml-2.6.0/pmml/man/pmml.naiveBayes.Rd | 2 pmml-2.6.0/pmml/man/pmml.neighbr.Rd | 4 pmml-2.6.0/pmml/man/pmml.nnet.Rd | 2 pmml-2.6.0/pmml/man/pmml.randomForest.Rd | 2 pmml-2.6.0/pmml/man/pmml.rpart.Rd | 2 pmml-2.6.0/pmml/man/pmml.rules.Rd | 15 pmml-2.6.0/pmml/man/pmml.svm.Rd | 4 pmml-2.6.0/pmml/man/pmml.xgb.Booster.Rd | 27 pmml-2.6.0/pmml/tests/testthat/test_pmml.gbm.R | 6 pmml-2.6.0/pmml/tests/testthat/test_pmml.miningschema.R | 52 pmml-2.6.0/pmml/tests/testthat/test_pmml.xgb.Booster.R | 42 pmml-2.6.0/pmml/tests/testthat/test_pmml_integration_ARIMA.R | 4 pmml-2.6.0/pmml/tests/testthat/test_pmml_integration_e1071_svm.R | 2 pmml-2.6.0/pmml/tests/testthat/test_pmml_integration_lm.R | 4 pmml-2.6.0/pmml/tests/testthat/test_pmml_integration_other.R | 14 pmml-2.6.0/pmml/tests/testthat/test_pmml_integration_transformations.R | 10 pmml-2.6.0/pmml/tests/testthat/test_pmml_integration_xgboost.R | 95 pmml-2.6.0/pmml/tests/testthat/test_schema_validation.R | 102 pmml-2.6.0/pmml/tests/testthat/test_validation_against_JPMML.R |only pmml-2.6.0/pmml/vignettes/packages_and_functions.Rmd | 2 pmml-2.6.0/pmml/vignettes/xform_function.Rmd | 4 73 files changed, 1485 insertions(+), 795 deletions(-)
Title: Mast Inference and Forecasting
Description: Analyzes production and dispersal of seeds dispersed from trees and recovered in seed traps. Motivated by long-term inventory plots where seed collections are used to infer seed production by each individual plant.
Author: James S. Clark [aut, cre]
Maintainer: James S. Clark <jimclark@duke.edu>
Diff between mastif versions 2.3 dated 2024-03-28 and 2.4 dated 2026-03-26
DESCRIPTION | 19 MD5 | 24 NAMESPACE | 8 R/captureRecaptureFunctions.R |only R/loadBestFit.R |only R/mastifFunctions.R | 5853 +++++++++++++++++++++++++----------------- inst/doc/mastifVignette.R | 1167 ++++---- inst/doc/mastifVignette.Rmd | 32 inst/doc/mastifVignette.html | 79 man/mastClimate.Rd | 5 man/mastFillCensus.Rd | 2 man/mastif-package.Rd | 4 man/mastif.Rd | 2 vignettes/mastifVignette.Rmd | 32 14 files changed, 4304 insertions(+), 2923 deletions(-)
Title: Mediation, Moderation and Moderated-Mediation After Model
Fitting
Description: Computes indirect effects, conditional effects, and conditional
indirect effects in a structural equation model or path model after model
fitting, with no need to define any user parameters or label any paths in
the model syntax, using the approach presented in Cheung and Cheung
(2024) <doi:10.3758/s13428-023-02224-z>. Can also form bootstrap
confidence intervals by doing bootstrapping only once and reusing the
bootstrap estimates in all subsequent computations. Supports bootstrap
confidence intervals for standardized (partially or completely) indirect
effects, conditional effects, and conditional indirect effects as described
in Cheung (2009) <doi:10.3758/BRM.41.2.425> and Cheung, Cheung, Lau, Hui,
and Vong (2022) <doi:10.1037/hea0001188>. Model fitting can be done by
structural equation modeling using lavaan() or regression using lm().
Author: Shu Fai Cheung [aut, cre] ,
Sing-Hang Cheung [aut] ,
Rong Wei Sun [ctb]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between manymome versions 0.3.3 dated 2026-01-08 and 0.3.4 dated 2026-03-26
DESCRIPTION | 6 MD5 | 77 +++---- NEWS.md | 51 ++++ R/merge_mod_levels.R | 3 R/plotmod.R | 32 ++ R/q_functions_helpers_lavaan.R | 8 R/q_mediation.R | 36 +-- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/do_boot.Rmd | 4 inst/doc/do_boot.html | 6 inst/doc/do_mc.Rmd | 4 inst/doc/do_mc.html | 6 inst/doc/do_mc_lavaan_mi.Rmd | 32 -- inst/doc/do_mc_lavaan_mi.html | 182 +++++++---------- inst/doc/manymome.Rmd | 2 inst/doc/manymome.html | 4 inst/doc/med_lav.Rmd | 2 inst/doc/med_lav.html | 4 inst/doc/med_lm.Rmd | 2 inst/doc/med_lm.html | 4 inst/doc/mod_levels.html | 6 inst/doc/mome_lm.Rmd | 2 inst/doc/mome_lm.html | 4 inst/extdata/mi_test_data.RData |binary man/plot.cond_indirect_effects.Rd | 10 man/q_mediation.Rd | 23 +- tests/testthat/test_cond_indirect_lm_label_space.R |only tests/testthat/test_plot_cond_indirect_effects_order.R |only tests/testthat/test_q_fct_mediation_sem_listwise.R |only vignettes/articles/med_mg.Rmd | 11 - vignettes/articles/med_mg.Rmd.original | 10 vignettes/articles/q_mediation.Rmd | 2 vignettes/do_boot.Rmd | 4 vignettes/do_mc.Rmd | 4 vignettes/do_mc_lavaan_mi.Rmd | 32 -- vignettes/manymome.Rmd | 2 vignettes/med_lav.Rmd | 2 vignettes/med_lm.Rmd | 2 vignettes/mome_lm.Rmd | 2 41 files changed, 329 insertions(+), 254 deletions(-)
Title: Less Code with More Comprehensive Results
Description: Each function replaces multiple standard R functions. For example,
two function calls, Read() and CountAll(), generate summary statistics for
all variables in the data frame, plus histograms and bar charts. Other
functions provide data aggregation via pivot tables; comprehensive
regression, ANOVA, and t-test; visualizations including integrated
Violin/Box/Scatter plot for a numerical variable, bar chart, histogram,
box plot, density curves, calibrated power curve; reading multiple data
formats with the same call; variable labels; time series with aggregation
and forecasting; color themes; and Trellis (facet) graphics. Also includes
a confirmatory factor analysis of multiple-indicator measurement models,
pedagogical routines for data simulation (e.g., Central Limit Theorem),
generation and rendering of regression instructions for interpretative output,
and both interactive construction of visualizations and interactive
visualizations with plotly.
Author: David W. Gerbing [aut, cre]
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.5.2 dated 2026-03-05 and 4.5.3 dated 2026-03-26
lessR-4.5.2/lessR/R/do.plotly.R |only lessR-4.5.2/lessR/inst/doc/intro.R |only lessR-4.5.2/lessR/inst/doc/intro.Rmd |only lessR-4.5.2/lessR/inst/doc/intro.html |only lessR-4.5.2/lessR/vignettes/intro.Rmd |only lessR-4.5.3/lessR/DESCRIPTION | 6 lessR-4.5.3/lessR/MD5 | 268 - lessR-4.5.3/lessR/NAMESPACE | 16 lessR-4.5.3/lessR/NEWS.md | 20 lessR-4.5.3/lessR/R/ANOVA.R | 62 lessR-4.5.3/lessR/R/ANOVAz1.R | 53 lessR-4.5.3/lessR/R/ANOVAz2.R | 66 lessR-4.5.3/lessR/R/Chart.R | 2941 ++++++------ lessR-4.5.3/lessR/R/Correlation.R | 20 lessR-4.5.3/lessR/R/CountAll.R | 22 lessR-4.5.3/lessR/R/Flows.R | 33 lessR-4.5.3/lessR/R/Logit.R | 120 lessR-4.5.3/lessR/R/Nest.R | 17 lessR-4.5.3/lessR/R/Read.R | 965 ++-- lessR-4.5.3/lessR/R/Regression.R | 134 lessR-4.5.3/lessR/R/STL.R | 15 lessR-4.5.3/lessR/R/SummaryStats.R | 17 lessR-4.5.3/lessR/R/X.R | 2476 +++++----- lessR-4.5.3/lessR/R/XY.R | 4687 +++++++++----------- lessR-4.5.3/lessR/R/bar.lattice.R | 94 lessR-4.5.3/lessR/R/bc.data.frame.R | 4 lessR-4.5.3/lessR/R/bc.main.R | 29 lessR-4.5.3/lessR/R/bubble.plotly.R | 86 lessR-4.5.3/lessR/R/corCFA.R | 76 lessR-4.5.3/lessR/R/corEFA.R | 42 lessR-4.5.3/lessR/R/corPrint.R | 2 lessR-4.5.3/lessR/R/corProp.R | 10 lessR-4.5.3/lessR/R/corRead.R | 11 lessR-4.5.3/lessR/R/corReflect.R | 3 lessR-4.5.3/lessR/R/corReorder.R | 16 lessR-4.5.3/lessR/R/corScree.R | 10 lessR-4.5.3/lessR/R/details.R | 83 lessR-4.5.3/lessR/R/dn.main.R | 27 lessR-4.5.3/lessR/R/dot.plotly.R |only lessR-4.5.3/lessR/R/dpmat.main.R | 70 lessR-4.5.3/lessR/R/factors.R | 183 lessR-4.5.3/lessR/R/getColors.R | 969 ++-- lessR-4.5.3/lessR/R/hier.plotly.R | 221 lessR-4.5.3/lessR/R/hst.main.R | 10 lessR-4.5.3/lessR/R/label.R | 4 lessR-4.5.3/lessR/R/logit.3Residual.R | 5 lessR-4.5.3/lessR/R/logit.4Pred.R | 17 lessR-4.5.3/lessR/R/logit.5Confuse.R | 7 lessR-4.5.3/lessR/R/order_by.R | 47 lessR-4.5.3/lessR/R/param.VBS.R | 47 lessR-4.5.3/lessR/R/param.old.R | 566 +- lessR-4.5.3/lessR/R/piechart.plotly.R | 41 lessR-4.5.3/lessR/R/pivot.R | 220 lessR-4.5.3/lessR/R/plt.colors.R | 8 lessR-4.5.3/lessR/R/plt.contour.R | 23 lessR-4.5.3/lessR/R/plt.lattice.R | 25 lessR-4.5.3/lessR/R/plt.main.R | 265 - lessR-4.5.3/lessR/R/plt.plotly.R | 314 + lessR-4.5.3/lessR/R/plt.txt.R | 29 lessR-4.5.3/lessR/R/radar.plotly.R | 73 lessR-4.5.3/lessR/R/recode.R | 20 lessR-4.5.3/lessR/R/reg.1ancova.R | 25 lessR-4.5.3/lessR/R/reg.1anvBasic.R | 24 lessR-4.5.3/lessR/R/reg.1bckBasic.R | 6 lessR-4.5.3/lessR/R/reg.1fitBasic.R | 16 lessR-4.5.3/lessR/R/reg.2Relations.R | 33 lessR-4.5.3/lessR/R/reg.3dnResidual.R | 14 lessR-4.5.3/lessR/R/reg.3resfitResidual.R | 17 lessR-4.5.3/lessR/R/reg.3txtResidual.R | 16 lessR-4.5.3/lessR/R/reg.4Pred.R | 34 lessR-4.5.3/lessR/R/reg.5Plot.R | 85 lessR-4.5.3/lessR/R/reg.5ancova.R | 18 lessR-4.5.3/lessR/R/reg.6mod.R | 18 lessR-4.5.3/lessR/R/reg.Kfold.R | 39 lessR-4.5.3/lessR/R/reshape_long.R | 36 lessR-4.5.3/lessR/R/reshape_wide.R | 13 lessR-4.5.3/lessR/R/savePlotly.R | 31 lessR-4.5.3/lessR/R/ss.factor.R | 775 +-- lessR-4.5.3/lessR/R/ss.numeric.R | 20 lessR-4.5.3/lessR/R/ss.pivot.R | 15 lessR-4.5.3/lessR/R/ss.real.R | 33 lessR-4.5.3/lessR/R/style.R | 200 lessR-4.5.3/lessR/R/style.show.R | 432 - lessR-4.5.3/lessR/R/tt.1graph.R | 7 lessR-4.5.3/lessR/R/tt.1group.R | 14 lessR-4.5.3/lessR/R/tt.2graph.R | 31 lessR-4.5.3/lessR/R/tt.2group.R | 34 lessR-4.5.3/lessR/R/tt.formula.R | 30 lessR-4.5.3/lessR/R/ttest.R | 44 lessR-4.5.3/lessR/R/ttestPower.R | 28 lessR-4.5.3/lessR/R/ttp2graph.R | 37 lessR-4.5.3/lessR/R/values.R | 6 lessR-4.5.3/lessR/R/zzz.R | 436 - lessR-4.5.3/lessR/R/zzz_plotly.R | 92 lessR-4.5.3/lessR/build/vignette.rds |binary lessR-4.5.3/lessR/data/dataStockPrice.rda |binary lessR-4.5.3/lessR/inst/doc/Chart.R |only lessR-4.5.3/lessR/inst/doc/Chart.Rmd |only lessR-4.5.3/lessR/inst/doc/Chart.html |only lessR-4.5.3/lessR/inst/doc/Customize.R |only lessR-4.5.3/lessR/inst/doc/Customize.Rmd |only lessR-4.5.3/lessR/inst/doc/Customize.html |only lessR-4.5.3/lessR/inst/doc/Extract.R |only lessR-4.5.3/lessR/inst/doc/Extract.Rmd |only lessR-4.5.3/lessR/inst/doc/Extract.html |only lessR-4.5.3/lessR/inst/doc/FactorAnalysis.R |only lessR-4.5.3/lessR/inst/doc/FactorAnalysis.Rmd |only lessR-4.5.3/lessR/inst/doc/FactorAnalysis.html |only lessR-4.5.3/lessR/inst/doc/Means.R |only lessR-4.5.3/lessR/inst/doc/Means.Rmd |only lessR-4.5.3/lessR/inst/doc/Means.html |only lessR-4.5.3/lessR/inst/doc/Proportions.R |only lessR-4.5.3/lessR/inst/doc/Proportions.Rmd |only lessR-4.5.3/lessR/inst/doc/Proportions.html |only lessR-4.5.3/lessR/inst/doc/ReadWrite.R |only lessR-4.5.3/lessR/inst/doc/ReadWrite.Rmd |only lessR-4.5.3/lessR/inst/doc/ReadWrite.html |only lessR-4.5.3/lessR/inst/doc/Regression.R |only lessR-4.5.3/lessR/inst/doc/Regression.Rmd |only lessR-4.5.3/lessR/inst/doc/Regression.html |only lessR-4.5.3/lessR/inst/doc/Time.R |only lessR-4.5.3/lessR/inst/doc/Time.Rmd |only lessR-4.5.3/lessR/inst/doc/Time.html |only lessR-4.5.3/lessR/inst/doc/X.R |only lessR-4.5.3/lessR/inst/doc/X.Rmd |only lessR-4.5.3/lessR/inst/doc/X.html |only lessR-4.5.3/lessR/inst/doc/XY.R |only lessR-4.5.3/lessR/inst/doc/XY.Rmd |only lessR-4.5.3/lessR/inst/doc/XY.html |only lessR-4.5.3/lessR/inst/doc/pivot.R |only lessR-4.5.3/lessR/inst/doc/pivot.Rmd |only lessR-4.5.3/lessR/inst/doc/pivot.html |only lessR-4.5.3/lessR/inst/doc/utilities.R |only lessR-4.5.3/lessR/inst/doc/utilities.Rmd |only lessR-4.5.3/lessR/inst/doc/utilities.html |only lessR-4.5.3/lessR/inst/shiny_apps/BarChart/app.R | 35 lessR-4.5.3/lessR/inst/shiny_apps/Histogram/app.R | 102 lessR-4.5.3/lessR/inst/shiny_apps/ScatterPlot/app.R | 42 lessR-4.5.3/lessR/man/Chart.Rd | 78 lessR-4.5.3/lessR/man/Flows.Rd | 17 lessR-4.5.3/lessR/man/Read.Rd | 2 lessR-4.5.3/lessR/man/STL.Rd | 2 lessR-4.5.3/lessR/man/SummaryStats.Rd | 33 lessR-4.5.3/lessR/man/X.Rd | 18 lessR-4.5.3/lessR/man/XY.Rd | 95 lessR-4.5.3/lessR/man/corScree.Rd | 3 lessR-4.5.3/lessR/man/getColors.Rd | 2 lessR-4.5.3/lessR/man/pivot.Rd | 2 lessR-4.5.3/lessR/man/reshape_long.Rd | 22 lessR-4.5.3/lessR/man/savePlotly.Rd | 6 lessR-4.5.3/lessR/man/ttest.Rd | 10 lessR-4.5.3/lessR/vignettes/Chart.Rmd |only lessR-4.5.3/lessR/vignettes/Customize.Rmd |only lessR-4.5.3/lessR/vignettes/Extract.Rmd |only lessR-4.5.3/lessR/vignettes/FactorAnalysis.Rmd |only lessR-4.5.3/lessR/vignettes/Means.Rmd |only lessR-4.5.3/lessR/vignettes/Proportions.Rmd |only lessR-4.5.3/lessR/vignettes/ReadWrite.Rmd |only lessR-4.5.3/lessR/vignettes/Regression.Rmd |only lessR-4.5.3/lessR/vignettes/Time.Rmd |only lessR-4.5.3/lessR/vignettes/X.Rmd |only lessR-4.5.3/lessR/vignettes/XY.Rmd |only lessR-4.5.3/lessR/vignettes/pivot.Rmd |only lessR-4.5.3/lessR/vignettes/utilities.Rmd |only 164 files changed, 9683 insertions(+), 9040 deletions(-)
Title: Access 'EMODnet' Web Feature Service Data
Description: Access and interrogate 'EMODnet' (European Marine Observation
and Data Network) Web Feature Service data <https://emodnet.ec.europa.eu/en/emodnet-web-service-documentation#data-download-services>.
This includes listing existing data sources, and getting data from each of them.
Author: Joana Beja [aut, cre] ,
Anna Krystalli [aut] ,
Salvador Fernandez-Bejarano [aut] ,
Thomas J Webb [ctb],
European Marine Observation Data Network Biology project
European Commission's Directorate - General for Maritime Affairs
and Fisheries [cph],
V [...truncated...]
Maintainer: Joana Beja <joana.beja@vliz.be>
This is a re-admission after prior archival of version 2.1.1 dated 2025-07-14
Diff between emodnet.wfs versions 2.1.1 dated 2025-07-14 and 2.1.2 dated 2026-03-26
DESCRIPTION | 8 +--- MD5 | 19 +++++----- NEWS.md | 2 + R/utils-roxygen2.R | 1 build/vignette.rds |binary inst/doc/emodnet.wfs.Rmd | 80 ++++++++++++++++++++++----------------------- inst/doc/emodnet.wfs.html | 80 ++++++++++++++++++++++----------------------- man/emodnet.wfs-package.Rd | 2 + man/figures/logo.png |only man/should_run_example.Rd | 1 vignettes/emodnet.wfs.Rmd | 80 ++++++++++++++++++++++----------------------- 11 files changed, 139 insertions(+), 134 deletions(-)
Title: Cronbach's Alpha
Description: Cronbach's alpha and various formulas for confidence intervals. The relevant paper is Tsagris M., Frangos C.C. and Frangos C.C. (2013). "Confidence intervals for Cronbach's reliability coefficient". Recent Techniques in Educational Science, 14-16 May, Athens, Greece.
Author: Michail Tsagris [aut, cre],
Constantinos Frangos [aut],
Christos Frangos [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Cronbach versions 0.3 dated 2025-07-21 and 0.4 dated 2026-03-26
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- NAMESPACE | 2 +- R/cron.ci.R | 4 ++-- man/Cronbach-package.Rd | 4 ++-- 5 files changed, 15 insertions(+), 14 deletions(-)
Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre] ,
Walter Boehm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between clue versions 0.3-67 dated 2026-02-18 and 0.3-68 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- build/partial.rdb |binary inst/doc/clue.pdf |binary man/GVME.Rd | 2 +- man/cl_dissimilarity.Rd | 2 +- man/cl_pam.Rd | 4 ++-- man/kmedoids.Rd | 4 ++-- man/pclust.Rd | 2 +- 9 files changed, 18 insertions(+), 18 deletions(-)
Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut],
Kurt Hornik [aut, cre] ,
Blake LeBaron [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tseries versions 0.10-60 dated 2026-02-18 and 0.10-61 dated 2026-03-26
ChangeLog | 4 ++++ DESCRIPTION | 6 +++--- MD5 | 8 ++++---- build/partial.rdb |binary man/tsbootstrap.Rd | 4 ++-- 5 files changed, 13 insertions(+), 9 deletions(-)
Title: Text Analysis Utilities
Description: Utilities for text analysis.
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre] ,
Ingo Feinerer [aut] ,
David Meyer [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tau versions 0.0-27 dated 2026-02-18 and 0.0-28 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- build/partial.rdb |binary inst/REFERENCES.R | 2 +- 4 files changed, 7 insertions(+), 7 deletions(-)
Title: Easier 'SQL' Integration
Description: Execute files of 'SQL' and manage database connections. 'SQL' statements and queries may be interpolated with string literals. Execution of individual statements and queries may be controlled with keywords. Multiple connections may be defined with 'YAML' and accessed by name.
Author: Matthew Roberts [aut, cre, cph]
Maintainer: Matthew Roberts <matthew@zsmr.uk>
Diff between sqlhelper versions 0.2.1 dated 2024-01-21 and 0.2.2 dated 2026-03-26
DESCRIPTION | 8 MD5 | 184 - NAMESPACE | 36 NEWS.md | 94 R/config_examples.R | 65 R/connect.R | 284 +- R/connection_info.R | 164 - R/default_conn.R | 46 R/disconnect.R | 66 R/get_driver.R | 78 R/is_connected.R | 92 R/live_connection.R | 72 R/prepare_sql.R | 458 +-- R/read_configs.R | 296 +- R/read_sql.R | 649 ++-- R/set_default_conn_name.R | 92 R/sqlrunners.R | 648 ++-- R/validate_configs.R | 182 - README.md | 110 build/vignette.rds |binary inst/doc/connections.R | 108 inst/doc/connections.Rmd | 458 +-- inst/doc/connections.html | 1196 ++++----- inst/doc/execution.R | 162 - inst/doc/execution.Rmd | 464 +-- inst/doc/execution.html | 1316 +++++----- inst/doc/sqlhelper.R | 120 inst/doc/sqlhelper.Rmd | 222 - inst/doc/sqlhelper.html | 982 +++---- inst/doc/use_case.R | 12 inst/doc/use_case.Rmd | 224 - inst/doc/use_case.html | 926 +++---- inst/examples/cascade.sql | 16 inst/examples/config_examples.yml | 38 inst/examples/read_sql_comments.SQL | 120 inst/examples/read_sql_execution_params.SQL | 18 inst/examples/run_files_ex1.sql | 20 inst/examples/run_files_ex2.sql | 16 inst/examples/sqlhelper_db_conf.yml | 28 man/config_examples.Rd | 57 man/connect.Rd | 135 - man/connection_info.Rd | 107 man/default_conn.Rd | 58 man/disconnect.Rd | 48 man/is_connected.Rd | 82 man/live_connection.Rd | 71 man/prepare_sql.Rd | 181 - man/read_sql.Rd | 148 - man/run_files.Rd | 221 - man/run_queries.Rd | 243 - man/set_default_conn_name.Rd | 81 tests/testthat.R | 10 tests/testthat/test-config_examples.R | 40 tests/testthat/test-connect.R | 152 - tests/testthat/test-get_driver.R | 76 tests/testthat/test-is_connected.R | 74 tests/testthat/test-prepare_sql.R | 460 +-- tests/testthat/test-read_configs.R | 86 tests/testthat/test-read_sql.R | 228 - tests/testthat/test-set_default_conn_name.R | 39 tests/testthat/test-sqlrunners.R | 584 ++-- tests/testthat/test-validate_configs.R | 62 tests/testthat/testfiles/sequential_queries.SQL | 22 tests/testthat/testfiles/sqlhelper_db_conf.yml | 36 tests/testthat/testfiles/sqlhelper_db_conf2.yml | 46 tests/testthat/testfiles/sqlhelper_db_conf_fail.yml | 10 tests/testthat/testfiles/test_injection.SQL | 2 tests/testthat/testfiles/test_prepare.SQL | 42 tests/testthat/testfiles/test_prepare_badconn.SQL | 8 tests/testthat/testfiles/test_read.SQL | 116 tests/testthat/testfiles/test_runfiles.SQL | 4 tests/testthat/testfiles/test_runfiles2.SQL | 4 tests/testthat/testfiles/test_runfiles_cascade_connection.SQL | 8 tests/testthat/testfiles/test_runfiles_cascade_connection2.SQL | 2 tests/testthat/testfiles/test_runfiles_connection.SQL | 14 tests/testthat/testfiles/test_runfiles_connection_fail.SQL | 14 tests/testthat/testfiles/test_runfiles_include_params.SQL | 2 tests/testthat/testfiles/test_runfiles_interpolate.SQL | 4 tests/testthat/testfiles/test_runfiles_new_default_connection.SQL | 2 tests/testthat/testfiles/test_runfiles_no_interpolate.SQL | 6 tests/testthat/testfiles/unknown_execmethod.SQL | 4 tests/testthat/testfiles/unknown_interpolate.SQL | 4 tests/testthat/testfiles/unknown_quotesql.SQL | 4 tests/testthat/testfiles/validate_configs_test.yml | 83 tests/testthat/testfiles/yml2conn_str_test.yml | 44 vignettes/connections.Rmd | 458 +-- vignettes/examples/binding.SQL | 14 vignettes/examples/example.sql | 16 vignettes/examples/petal_length_params.sql | 28 vignettes/examples/sqlhelper_db_conf.yml | 28 vignettes/execution.Rmd | 464 +-- vignettes/sqlhelper.Rmd | 222 - vignettes/use_case.Rmd | 224 - 93 files changed, 7658 insertions(+), 7590 deletions(-)
Title: Utilities to Support Lidar Applications at the Landscape,
Forest, and Tree Scale
Description: Implements algorithms for terrestrial, mobile, and airborne lidar processing, tree detection,
segmentation, and attribute estimation (Donager et al., 2021)
<doi:10.3390/rs13122297>, and a hierarchical patch delineation algorithm
'PatchMorph' (Girvetz & Greco, 2007) <doi:10.1007/s10980-007-9104-8>. Tree
detection uses rasterized point cloud metrics (relative neighborhood density and
verticality) combined with RANSAC cylinder fitting to locate tree boles and estimate
diameter at breast height. Tree segmentation applies graph-theory approaches inspired
by Tao et al. (2015) <doi:10.1016/j.isprsjprs.2015.08.007> with cylinder fitting
methods from de Conto et al. (2017) <doi:10.1016/j.compag.2017.07.019>. PatchMorph
delineates habitat patches across spatial scales using organism-specific thresholds.
Built on 'lidR' (Roussel et al., 2020) <doi:10.1016/j.rse.2020.112061>.
Author: Andrew Sanchez Meador [aut, cre, ctb] ,
Jonathon Donager [aut, ctb] ,
Blackburn Ryan [aut, ctb] ,
Cannon Jeffery [ctb] ,
Tiago de Conto [ctb, cph] ,
Keith O'Hara [ctb, cph]
Maintainer: Andrew Sanchez Meador <Andrew.SanchezMeador@nau.edu>
Diff between spanner versions 1.0.2 dated 2026-02-03 and 1.0.3 dated 2026-03-26
DESCRIPTION | 8 MD5 | 32 NEWS.md | 151 +-- R/Patch_Morph.R | 404 ++++---- R/PostProcess_TreeLocations.R | 492 +++++----- R/Raster_Eigen_TreeLocations.R | 608 ++++++------- R/Segment_Graph.R | 630 ++++++------- R/utils.R | 1900 ++++++++++++++++++++--------------------- README.md | 4 build/stage23.rdb |binary man/colorize_las.Rd | 180 +-- man/compute_pcv.Rd | 72 - man/compute_ssao.Rd | 90 - man/create_rotation_gif.Rd | 174 +-- man/download_naip_for_las.Rd | 126 +- man/merge_las_colors.Rd | 124 +- src/backports.h | 3 17 files changed, 2504 insertions(+), 2494 deletions(-)
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre] ,
Ingo Feinerer [aut] ,
Martin Kober [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between skmeans versions 0.2-19 dated 2026-02-04 and 0.2-20 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 5 insertions(+), 5 deletions(-)
Title: R/Weka Interface
Description: An R interface to Weka (Version 3.9.3).
Weka is a collection of machine learning algorithms for data mining
tasks written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package 'RWeka' contains the interface code, the
Weka jar is in a separate package 'RWekajars'. For more information
on Weka see <https://www.cs.waikato.ac.nz/ml/weka/>.
Author: Kurt Hornik [aut, cre] ,
Christian Buchta [ctb],
Torsten Hothorn [ctb],
Alexandros Karatzoglou [ctb],
David Meyer [ctb],
Achim Zeileis [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between RWeka versions 0.4-47 dated 2026-02-18 and 0.4-48 dated 2026-03-26
CHANGELOG | 4 ++++ DESCRIPTION | 6 +++--- MD5 | 10 +++++----- build/partial.rdb |binary inst/REFERENCES.R | 6 ++---- inst/doc/RWeka.pdf |binary 6 files changed, 14 insertions(+), 12 deletions(-)
Title: Data Structures and Algorithms for Relations
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate functions,
and fitters for consensus relations.
Author: David Meyer [aut] ,
Kurt Hornik [aut, cre] ,
Christian Buchta [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between relations versions 0.6-16 dated 2026-02-18 and 0.6-17 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- build/partial.rdb |binary inst/NEWS.Rd | 6 ++++++ inst/doc/relations.pdf |binary 5 files changed, 13 insertions(+), 7 deletions(-)
Title: Mixtures of von Mises-Fisher Distributions
Description: Fit and simulate mixtures of von Mises-Fisher distributions.
Author: Kurt Hornik [aut, cre] ,
Bettina Gruen [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between movMF versions 0.2-10 dated 2026-02-18 and 0.2-11 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- build/partial.rdb |binary inst/NEWS.Rd | 5 +++++ inst/doc/movMF.pdf |binary man/movMF.Rd | 2 +- 6 files changed, 14 insertions(+), 9 deletions(-)
Title: Machine Learning Benchmark Problems
Description: A collection of artificial and real-world machine learning
benchmark problems, including, e.g., several
data sets from the UCI repository.
Author: Friedrich Leisch [aut] ,
Evgenia Dimitriadou [aut],
Kurt Hornik [cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between mlbench versions 2.1-7 dated 2026-02-18 and 2.1-8 dated 2026-03-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 6 ++++++ build/partial.rdb |binary 4 files changed, 13 insertions(+), 7 deletions(-)
Title: Administrative Boundaries of Spain
Description: Administrative Boundaries of Spain at several levels
(Autonomous Communities, Provinces, Municipalities) based on the
'GISCO' 'Eurostat' database <https://ec.europa.eu/eurostat/web/gisco>
and 'CartoBase SIANE' from 'Instituto Geografico Nacional'
<https://www.ign.es/>. It also provides a 'leaflet' plugin and the
ability of downloading and processing static tiles.
Author: Diego Hernangomez [aut, cre, cph] ,
Eurostat [cph] ,
Instituto Geografico Nacional [cph] ,
Francisco J. Goerlich [ctb]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between mapSpain versions 1.0.0 dated 2026-01-17 and 1.1.0 dated 2026-03-26
mapSpain-1.0.0/mapSpain/inst/doc/imagery.R |only mapSpain-1.0.0/mapSpain/inst/doc/imagery.Rmd |only mapSpain-1.0.0/mapSpain/inst/doc/mapSpain.Rmd |only mapSpain-1.0.0/mapSpain/vignettes/imagery.Rmd |only mapSpain-1.0.0/mapSpain/vignettes/mapSpain.Rmd |only mapSpain-1.1.0/mapSpain/DESCRIPTION | 18 mapSpain-1.1.0/mapSpain/MD5 | 221 +-- mapSpain-1.1.0/mapSpain/NEWS.md | 288 ++-- mapSpain-1.1.0/mapSpain/R/addProviderEspTiles.R | 1 mapSpain-1.1.0/mapSpain/R/data.R | 12 mapSpain-1.1.0/mapSpain/R/esp-cache.R | 3 mapSpain-1.1.0/mapSpain/R/esp-check-access.R | 19 mapSpain-1.1.0/mapSpain/R/esp-dict.R | 2 mapSpain-1.1.0/mapSpain/R/esp-get-can-box.R | 2 mapSpain-1.1.0/mapSpain/R/esp-get-capimun.R | 1 mapSpain-1.1.0/mapSpain/R/esp-get-ccaa-siane.R | 2 mapSpain-1.1.0/mapSpain/R/esp-get-ccaa.R | 4 mapSpain-1.1.0/mapSpain/R/esp-get-comarca.R | 3 mapSpain-1.1.0/mapSpain/R/esp-get-countries-siane.R | 3 mapSpain-1.1.0/mapSpain/R/esp-get-grid-EEA.R | 1 mapSpain-1.1.0/mapSpain/R/esp-get-grid-ESDAC.R | 2 mapSpain-1.1.0/mapSpain/R/esp-get-grid-MTN.R | 3 mapSpain-1.1.0/mapSpain/R/esp-get-gridmap.R | 6 mapSpain-1.1.0/mapSpain/R/esp-get-hydrobasin.R | 5 mapSpain-1.1.0/mapSpain/R/esp-get-hypsobath.R | 5 mapSpain-1.1.0/mapSpain/R/esp-get-landwater.R | 2 mapSpain-1.1.0/mapSpain/R/esp-get-munic-siane.R | 4 mapSpain-1.1.0/mapSpain/R/esp-get-munic.R | 8 mapSpain-1.1.0/mapSpain/R/esp-get-nuts.R | 17 mapSpain-1.1.0/mapSpain/R/esp-get-prov-siane.R | 1 mapSpain-1.1.0/mapSpain/R/esp-get-prov.R | 4 mapSpain-1.1.0/mapSpain/R/esp-get-spain-siane.R | 1 mapSpain-1.1.0/mapSpain/R/esp-get-spain.R | 2 mapSpain-1.1.0/mapSpain/R/esp-get-tiles.R | 8 mapSpain-1.1.0/mapSpain/R/esp-make-provider.R | 2 mapSpain-1.1.0/mapSpain/R/esp-move-can.R | 5 mapSpain-1.1.0/mapSpain/R/esp-siane-bulk-download.R | 2 mapSpain-1.1.0/mapSpain/R/mapSpain-package.R | 2 mapSpain-1.1.0/mapSpain/R/sysdata.rda |binary mapSpain-1.1.0/mapSpain/R/utils-convert-names.R | 1 mapSpain-1.1.0/mapSpain/R/utils-country.R | 6 mapSpain-1.1.0/mapSpain/R/utils-get-tiles.R | 3 mapSpain-1.1.0/mapSpain/R/utils-sf.R | 5 mapSpain-1.1.0/mapSpain/R/utils-slippy.R | 1 mapSpain-1.1.0/mapSpain/R/utils-url.R | 21 mapSpain-1.1.0/mapSpain/R/utils.R | 1 mapSpain-1.1.0/mapSpain/README.md | 57 mapSpain-1.1.0/mapSpain/build/partial.rdb |binary mapSpain-1.1.0/mapSpain/build/vignette.rds |binary mapSpain-1.1.0/mapSpain/data/esp_codelist.rda |binary mapSpain-1.1.0/mapSpain/data/esp_nuts_2024.rda |binary mapSpain-1.1.0/mapSpain/data/esp_tiles_providers.rda |binary mapSpain-1.1.0/mapSpain/data/pobmun25.rda |binary mapSpain-1.1.0/mapSpain/inst/CITATION | 1 mapSpain-1.1.0/mapSpain/inst/COPYRIGHTS | 24 mapSpain-1.1.0/mapSpain/inst/doc/imagery.html | 183 -- mapSpain-1.1.0/mapSpain/inst/doc/imagery.qmd |only mapSpain-1.1.0/mapSpain/inst/doc/mapSpain.html | 642 +++------- mapSpain-1.1.0/mapSpain/inst/doc/mapSpain.qmd |only mapSpain-1.1.0/mapSpain/inst/schemaorg.json | 4 mapSpain-1.1.0/mapSpain/man/esp_check_access.Rd | 7 mapSpain-1.1.0/mapSpain/man/esp_clear_cache.Rd | 1 mapSpain-1.1.0/mapSpain/man/esp_codelist.Rd | 2 mapSpain-1.1.0/mapSpain/man/esp_get_can_box.Rd | 1 mapSpain-1.1.0/mapSpain/man/esp_get_ccaa.Rd | 2 mapSpain-1.1.0/mapSpain/man/esp_get_ccaa_siane.Rd | 1 mapSpain-1.1.0/mapSpain/man/esp_get_grid_ESDAC.Rd | 2 mapSpain-1.1.0/mapSpain/man/esp_get_gridmap.Rd | 4 mapSpain-1.1.0/mapSpain/man/esp_get_hydrobasin.Rd | 5 mapSpain-1.1.0/mapSpain/man/esp_get_hypsobath.Rd | 5 mapSpain-1.1.0/mapSpain/man/esp_get_landwater.Rd | 2 mapSpain-1.1.0/mapSpain/man/esp_get_nuts.Rd | 8 mapSpain-1.1.0/mapSpain/man/esp_get_prov.Rd | 2 mapSpain-1.1.0/mapSpain/man/esp_get_spain.Rd | 1 mapSpain-1.1.0/mapSpain/man/esp_get_spain_siane.Rd | 1 mapSpain-1.1.0/mapSpain/man/esp_get_tiles.Rd | 1 mapSpain-1.1.0/mapSpain/man/esp_make_provider.Rd | 1 mapSpain-1.1.0/mapSpain/man/esp_move_can.Rd | 3 mapSpain-1.1.0/mapSpain/man/esp_nuts_2024.Rd | 4 mapSpain-1.1.0/mapSpain/man/esp_set_cache_dir.Rd | 1 mapSpain-1.1.0/mapSpain/man/esp_siane_bulk_download.Rd | 2 mapSpain-1.1.0/mapSpain/man/figures/README-tile-1.png |binary mapSpain-1.1.0/mapSpain/tests/testthat/_snaps/esp-get-attributions.md | 14 mapSpain-1.1.0/mapSpain/tests/testthat/_snaps/esp-get-landwater.md | 72 - mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-cache.R | 1 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-capimun.R | 17 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-ccaa-siane.R | 20 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-ccaa.R | 38 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-comarca.R | 20 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-countries-siane.R | 17 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-grid-BDN.R | 17 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-grid-ESDAC.R | 16 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-grid-MTN.R | 18 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-hydrobasin.R | 20 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-hypsobath.R | 20 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-landwater.R | 17 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-munic-siane.R | 17 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-munic.R | 40 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-nuts.R | 37 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-prov-siane.R | 20 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-prov.R | 35 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-railway.R | 17 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-roads.R | 17 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-simpl.R | 17 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-spain-siane.R | 21 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-spain.R | 38 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-stations.R | 17 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-get-tiles.R | 38 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-move-can.R | 1 mapSpain-1.1.0/mapSpain/tests/testthat/test-esp-siane-bulk-download.R | 17 mapSpain-1.1.0/mapSpain/tests/testthat/test-utils-convert-names.R | 1 mapSpain-1.1.0/mapSpain/tests/testthat/test-utils-get-tiles.R | 1 mapSpain-1.1.0/mapSpain/tests/testthat/test-utils-url.R | 47 mapSpain-1.1.0/mapSpain/tests/testthat/test-utils.R | 1 mapSpain-1.1.0/mapSpain/vignettes/imagery.qmd |only mapSpain-1.1.0/mapSpain/vignettes/mapSpain.qmd |only 116 files changed, 1032 insertions(+), 1321 deletions(-)
Title: Generalised Exponential Poisson and Poisson Exponential
Distributions
Description: Maximum likelihood estimation, random values generation, density computation and other functions for the exponential-Poisson generalised exponential-Poisson and Poisson-exponential distributions. References include: Rodrigues G. C., Louzada F. and Ramos P. L. (2018). "Poisson-exponential distribution: different methods of estimation". Journal of Applied Statistics, 45(1): 128--144. <doi:10.1080/02664763.2016.1268571>. Louzada F., Ramos, P. L. and Ferreira, H. P. (2020). "Exponential-Poisson distribution: estimation and applications to rainfall and aircraft data with zero occurrence". Communications in Statistics--Simulation and Computation, 49(4): 1024--1043. <doi:10.1080/03610918.2018.1491988>. Barreto-Souza W. and Cribari-Neto F. (2009). "A generalization of the exponential-Poisson distribution". Statistics and Probability Letters, 79(24): 2493--2500. <doi:10.1016/j.spl.2009.09.003>.
Author: Michail Tsagris [aut, cre],
Sofia Piperaki [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between geppe versions 1.0 dated 2024-06-24 and 1.1 dated 2026-03-26
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ NAMESPACE | 2 +- R/repois.R | 2 +- R/rgep.R | 2 +- R/rpe.R | 4 ++-- man/geppe-package.Rd | 6 +++--- 7 files changed, 20 insertions(+), 19 deletions(-)
Title: Bivariate Poisson Distribution
Description: Maximum likelihood estimation, random values generation, density computation and other functions for the bivariate Poisson distribution. References include: Kawamura K. (1984). "Direct calculation of maximum likelihood estimator for the bivariate Poisson distribution". Kodai Mathematical Journal, 7(2): 211--221. <doi:10.2996/kmj/1138036908>. Kocherlakota S. and Kocherlakota K. (1992). "Bivariate discrete distributions". CRC Press. <doi:10.1201/9781315138480>. Karlis D. and Ntzoufras I. (2003). "Analysis of sports data by using bivariate Poisson models". Journal of the Royal Statistical Society: Series D (The Statistician), 52(3): 381--393. <doi:10.1111/1467-9884.00366>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between bivpois versions 1.1 dated 2025-01-08 and 1.2 dated 2026-03-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/bp.mle2.R | 6 +++--- R/lambda3.profile.R | 7 ++----- man/bivpois-package.Rd | 4 ++-- 5 files changed, 15 insertions(+), 18 deletions(-)
Title: Leakage-Safe Modeling and Auditing for Genomic and Clinical Data
Description: Prevents and detects information leakage in biomedical machine learning.
Provides leakage-resistant split policies (subject-grouped, batch-blocked, study leave-out, time-ordered),
guarded preprocessing (train-only imputation, normalization, filtering, feature selection),
cross-validated fitting with common learners, permutation-gap auditing, batch and fold association tests,
and duplicate detection.
Author: Selcuk Korkmaz [aut, cre]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between bioLeak versions 0.3.0 dated 2026-03-05 and 0.3.5 dated 2026-03-26
DESCRIPTION | 8 MD5 | 88 - NAMESPACE | 3 NEWS.md | 66 + R/audit.R | 76 + R/ci_delta.R | 6 R/classes.R | 65 + R/cv_uncertainty.R | 19 R/delta_lsi.R |only R/diagnostics_extra.R | 19 R/fit_resample.R | 45 R/guards.R | 25 R/impute_guarded.R | 3 R/make_split_plan.R | 84 + R/permute_labels.R | 147 +- R/plotting_audit.R | 6 R/simulate_suite.R | 24 R/tidymodels.R | 25 R/tune_resample.R | 7 R/utils_metrics.R | 3 R/utils_se.R | 25 README.md | 145 +- build/vignette.rds |binary inst/doc/bioLeak-intro.R | 193 +++ inst/doc/bioLeak-intro.Rmd | 721 ++++++++++++- inst/doc/bioLeak-intro.html | 1592 ++++++++++++++++++++++++----- man/LeakClasses.Rd | 50 man/audit_leakage.Rd | 13 man/check_split_overlap.Rd | 2 man/confounder_sensitivity.Rd | 7 man/delta_lsi.Rd |only man/dot-permute_labels_factory.Rd | 5 man/impute_guarded.Rd | 3 man/simulate_leakage_suite.Rd | 24 man/summary.LeakDeltaLSI.Rd |only tests/testthat/helper-load.R | 6 tests/testthat/test-check-split-overlap.R | 12 tests/testthat/test-ci-delta-cvauc.R | 8 tests/testthat/test-combined-splits.R | 48 tests/testthat/test-cv-uncertainty.R | 30 tests/testthat/test-delta-lsi.R |only tests/testthat/test-invariants.R | 32 tests/testthat/test-make-split-plan-edge.R | 22 tests/testthat/test-n-axis-constraints.R | 96 - tests/testthat/test-tidymodels-interop.R | 60 - tests/testthat/test-validation-policy.R | 2 vignettes/bioLeak-intro.Rmd | 721 ++++++++++++- 47 files changed, 3916 insertions(+), 620 deletions(-)
Title: Import, Assemble, and Deduplicate Bibliographic Datasets
Description: A critical first step in systematic literature reviews
and mining of academic texts is to identify relevant texts from a range
of sources, particularly databases such as 'Web of Science' or 'Scopus'.
These databases often export in different formats or with different metadata
tags. 'synthesisr' expands on the tools outlined by Westgate (2019)
<doi:10.1002/jrsm.1374> to import bibliographic data from a range of formats
(such as 'bibtex', 'ris', or 'ciw') in a standard way, and allows merging
and deduplication of the resulting dataset.
Author: Martin Westgate [aut, cre] ,
Eliza Grames [aut]
Maintainer: Martin Westgate <martinjwestgate@gmail.com>
Diff between synthesisr versions 0.3.0 dated 2020-06-03 and 0.4.1 dated 2026-03-26
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Title: Bootstrapping Helpers for Structural Equation Modelling
Description: A collection of helper functions for forming
bootstrapping confidence intervals and examining bootstrap
estimates in structural equation modelling,
introduced in Yang and Cheung (2026) <doi: 10.3758/s13428-025-02911-z>
The function currently
support models fitted by the 'lavaan' package by
Rosseel (2012) <doi:10.18637/jss.v048.i02>.
Author: Wendie Yang [aut, cre] ,
Shu Fai Cheung [aut]
Maintainer: Wendie Yang <1581075494q@gmail.com>
Diff between semboottools versions 0.1.2 dated 2026-03-19 and 0.1.2.1 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 2 +- inst/doc/gg_hist_qq_boot_and_gg_scatter_boot.R | 4 +--- inst/doc/gg_hist_qq_boot_and_gg_scatter_boot.Rmd | 4 +--- inst/doc/gg_hist_qq_boot_and_gg_scatter_boot.html | 12 +++++------- vignettes/gg_hist_qq_boot_and_gg_scatter_boot.Rmd | 4 +--- 7 files changed, 18 insertions(+), 26 deletions(-)
Title: Test, Document, Containerise, and Deploy R Packages
Description: Reproducibility is essential to the progress of research,
yet achieving it remains elusive even in computational fields.
Continuous Integration (CI) platforms offer a powerful way to launch automated workflows
to check and document code, but often require considerable time, effort,
and technical expertise to setup. We therefore developed the rworkflows suite
to make robust CI workflows easy and freely accessible to all R package developers.
rworkflows consists of 1) a CRAN/Bioconductor-compatible R package template,
2) an R package to quickly implement a standardised workflow, and
3) a centrally maintained GitHub Action.
Author: Brian Schilder [aut] ,
Alan Murphy [aut, ctb] ,
Hiranyamaya Dash [ctb, cre] ,
Nathan Skene [aut]
Maintainer: Hiranyamaya (Hiru) Dash <hdash.work@gmail.com>
Diff between rworkflows versions 1.0.10 dated 2026-03-23 and 1.0.11 dated 2026-03-26
DESCRIPTION | 6 - MD5 | 26 +++--- NEWS.md | 15 ++++ R/fill_yaml.R | 10 +- R/use_workflow.R | 28 +++++-- README.md | 4 - inst/doc/bioconductor.html | 20 +++-- inst/doc/depgraph.html | 4 - inst/doc/docker.html | 4 - inst/doc/repos.html | 4 - inst/doc/rworkflows.html | 119 +++++++++++++++++--------------- man/use_workflow.Rd | 16 ++++ tests/testthat/test-construct_authors.R | 1 tests/testthat/test-use_workflow.R | 11 ++ 14 files changed, 171 insertions(+), 97 deletions(-)
Title: Fast and Light-Weight Partial Distance Correlation
Description: Fast and memory-less computation of the partial distance correlation for vectors and matrices. Permutation-based and asymptotic hypothesis testing for zero partial distance correlation are also performed. References include: Szekely G. J. and Rizzo M. L. (2014). "Partial distance correlation with methods for dissimilarities". The Annals Statistics, 42(6): 2382--2412. <doi:10.1214/14-AOS1255>. Shen C., Panda S. and Vogelstein J. T. (2022). "The Chi-Square Test of Distance Correlation". Journal of Computational and Graphical Statistics, 31(1): 254--262. <doi:10.1080/10618600.2021.1938585>. Szekely G. J. and Rizzo M. L. (2023). "The Energy of Data and Distance Correlation". Chapman and Hall/CRC. <ISBN:9781482242744>. Kontemeniotis N., Vargiakakis R. and Tsagris M. (2025). On independence testing using the (partial) distance correlation. <doi:10.48550/arXiv.2506.15659>.
Author: Michail Tsagris [aut, cre],
Nikolaos Kontemeniotis [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between pdcor versions 1.2 dated 2025-07-02 and 1.3 dated 2026-03-26
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- NAMESPACE | 2 +- man/pdcor-package.Rd | 4 ++-- 4 files changed, 12 insertions(+), 11 deletions(-)
Title: Leave One Out Kernel Density Estimates for Outlier Detection
Description: Outlier detection using leave-one-out kernel density estimates and
extreme value theory. The bandwidth for kernel density estimates is computed
using persistent homology, a technique in topological data analysis. Using
peak-over-threshold method, a generalized Pareto distribution is fitted to
the log of leave-one-out kde values to identify outliers.
Author: Sevvandi Kandanaarachchi [aut, cre] ,
Rob Hyndman [aut] ,
Chris Fraley [ctb]
Maintainer: Sevvandi Kandanaarachchi <sevvandik@gmail.com>
Diff between lookout versions 2.0.0 dated 2026-01-19 and 2.0.1 dated 2026-03-26
DESCRIPTION | 11 ++++++----- MD5 | 16 +++++++++------- NEWS.md | 4 ++++ R/bandwidth.R | 16 +++++++++------- R/lookoutliers.R | 6 +++--- R/outlier_persistence.R | 15 +++++++++------ man/find_tda_bw.Rd | 4 ++-- man/lookout.Rd | 6 +++--- tests |only 9 files changed, 45 insertions(+), 33 deletions(-)
Title: Independent Surrogate Variable Analysis
Description: Uses Independent Component Analysis to perform feature selection in the presence of unknown confounders.
Author: Andrew Teschendorff [aut, cre]
Maintainer: Andrew Teschendorff <andrew@sinh.ac.cn>
Diff between isva versions 1.9 dated 2017-01-13 and 1.10 dated 2026-03-26
isva-1.10/isva/DESCRIPTION | 26 +++++++++++++------------- isva-1.10/isva/MD5 | 10 +++++----- isva-1.10/isva/NAMESPACE | 1 - isva-1.10/isva/data/simdataISVA.rda |only isva-1.10/isva/man/DoISVA.Rd | 3 +++ isva-1.10/isva/man/simdataISVA.Rd | 6 +++--- isva-1.9/isva/data/simdataISVA.RData |only 7 files changed, 24 insertions(+), 22 deletions(-)
Title: Regularization Paths for Regression Models with Grouped
Covariates
Description: Efficient algorithms for fitting the regularization path of linear
regression, GLM, and Cox regression models with grouped penalties. This
includes group selection methods such as group lasso, group MCP, and
group SCAD as well as bi-level selection methods such as the group
exponential lasso, the composite MCP, and the group bridge. For more
information, see Breheny and Huang (2009) <doi:10.4310/sii.2009.v2.n3.a10>,
Huang, Breheny, and Ma (2012) <doi:10.1214/12-sts392>, Breheny and Huang
(2015) <doi:10.1007/s11222-013-9424-2>, and Breheny (2015)
<doi:10.1111/biom.12300>, or visit the package homepage
<https://pbreheny.github.io/grpreg/>.
Author: Patrick Breheny [aut, cre] ,
Yaohui Zeng [ctb],
Ryan Miller [aut] ,
Ryan Kurth [ctb]
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between grpreg versions 3.5.0 dated 2024-09-03 and 3.6.0 dated 2026-03-26
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Title: Network Meta-Analysis Using Bayesian Methods
Description: Network meta-analyses (mixed treatment comparisons) in the Bayesian
framework using JAGS. Includes methods to assess heterogeneity and
inconsistency, and a number of standard visualizations.
van Valkenhoef et al. (2012) <doi:10.1002/jrsm.1054>;
van Valkenhoef et al. (2015) <doi:10.1002/jrsm.1167>.
Author: Gert van Valkenhoef [aut, cre],
Joel Kuiper [aut]
Maintainer: Gert van Valkenhoef <gert@gertvv.nl>
Diff between gemtc versions 1.1-0 dated 2025-07-08 and 1.1-1 dated 2026-03-26
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 9 +++++++++ R/anohe.R | 16 +++++++++++----- R/inits.R | 2 +- R/mtc.run.R | 10 +++++++--- man/atrialFibrillation.Rd | 2 +- man/mtc.run.Rd | 3 ++- 8 files changed, 42 insertions(+), 22 deletions(-)
Title: Faster K-Medoids Clustering Algorithms: FastPAM, FastCLARA,
FastCLARANS
Description: R wrappers of C++ implementation of Faster K-Medoids clustering algorithms (FastPAM, FastCLARA and FastCLARANS) proposed in Erich Schubert, Peter J. Rousseeuw 2019 <doi:10.1007/978-3-030-32047-8_16>.
Author: Xun Li [aut, cre]
Maintainer: Xun Li <lixun910@gmail.com>
This is a re-admission after prior archival of version 1.5 dated 2026-03-11
Diff between fastkmedoids versions 1.5 dated 2026-03-11 and 1.6 dated 2026-03-26
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/pam.cpp | 5 ++++- 3 files changed, 10 insertions(+), 7 deletions(-)
Title: Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data. In
particular representation, manipulation, rate estimation and
simulation for multistate data - the Lexis suite of functions, which
includes interfaces to 'mstate', 'etm' and 'cmprsk' packages.
Contains functions for Age-Period-Cohort and Lee-Carter modeling and
a function for interval censored data. Has functions for extracting
and manipulating parameter estimates and predicted values (ci.lin
and its cousins), as well as a number of epidemiological data sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.63 dated 2026-03-20 and 2.64 dated 2026-03-26
DESCRIPTION | 8 MD5 | 112 - NAMESPACE | 1 inst/doc/01flup.pdf |binary inst/doc/02addLexis.pdf |binary inst/doc/03crisk.pdf |binary inst/doc/04simLexis.pdf |binary inst/doc/05yll.pdf |binary man/overlap.Lexis.Rd | 4 vignettes/01flup-Ieff.pdf |binary vignettes/01flup-IeffR.pdf |binary vignettes/01flup-box1.pdf |binary vignettes/01flup-box4.pdf |binary vignettes/01flup-dmL1.pdf |binary vignettes/01flup-dmL2.pdf |binary vignettes/01flup-dur-int-RR.pdf |binary vignettes/01flup-dur-int.pdf |binary vignettes/01flup-ins-time.pdf |binary vignettes/01flup-mbox.pdf |binary vignettes/01flup-mboxr.pdf |binary vignettes/01flup-pr-a.pdf |binary vignettes/01flup-sep-HR.pdf |binary vignettes/01flup-sep-mort.pdf |binary vignettes/01flup.pdf | 2289 +++++++++++++++++++------------------- vignettes/01flup.tex | 8 vignettes/02addLexis.pdf | 1784 ++++++++++++++--------------- vignettes/02addLexis.tex | 14 vignettes/03crisk-Sr1.pdf |binary vignettes/03crisk-Sr2.pdf |binary vignettes/03crisk-boxes.pdf |binary vignettes/03crisk-boxes4.pdf |binary vignettes/03crisk-boxes5.pdf |binary vignettes/03crisk-cR.pdf |binary vignettes/03crisk-crates.pdf |binary vignettes/03crisk-difrat.pdf |binary vignettes/03crisk-difratx.pdf |binary vignettes/03crisk-rates-ci.pdf |binary vignettes/03crisk-rates-l.pdf |binary vignettes/03crisk-rates.pdf |binary vignettes/03crisk-stack-ci.pdf |binary vignettes/03crisk-stack.pdf |binary vignettes/03crisk.pdf | 1453 ++++++++++++------------ vignettes/03crisk.tex | 6 vignettes/04simLexis-boxes.pdf |binary vignettes/04simLexis-comp-0.pdf |binary vignettes/04simLexis-mort-int.pdf |binary vignettes/04simLexis-pstate0.pdf |binary vignettes/04simLexis-pstatex.pdf |binary vignettes/04simLexis-pstatey.pdf |binary vignettes/04simLexis.pdf | 2090 +++++++++++++++++----------------- vignettes/04simLexis.tex | 14 vignettes/05yll-imm.pdf |binary vignettes/05yll-states.pdf |binary vignettes/05yll-sus.pdf |binary vignettes/05yll-tot.pdf |binary vignettes/05yll.pdf |binary vignettes/05yll.tex | 6 57 files changed, 3906 insertions(+), 3883 deletions(-)
Title: Block Structure Detection Using Singular Vectors
Description: Provides methods to perform block diagonal covariance matrix detection using singular vectors ('BD-SVD'), which can be extended to inherently sparse principal component analysis ('IS-PCA'). The methods are described in Bauer (2025) <doi:10.1080/10618600.2024.2422985> and Bauer (2026) <doi:10.48550/arXiv.2510.03729>.
Author: Jan O. Bauer [aut, cre] ,
Ron Holzapfel [aut]
Maintainer: Jan O. Bauer <j.bauer@vu.nl>
Diff between bdsvd versions 0.2.1 dated 2025-01-08 and 1.2.1 dated 2026-03-26
bdsvd-0.2.1/bdsvd/R/hcsvd.R |only bdsvd-0.2.1/bdsvd/man/block-class.Rd |only bdsvd-0.2.1/bdsvd/man/hcsvd.Rd |only bdsvd-0.2.1/bdsvd/man/hcsvd.cor.sim.Rd |only bdsvd-0.2.1/bdsvd/tests/testthat/test-hcsvd.R |only bdsvd-1.2.1/bdsvd/DESCRIPTION | 20 - bdsvd-1.2.1/bdsvd/MD5 | 35 +- bdsvd-1.2.1/bdsvd/NAMESPACE | 19 - bdsvd-1.2.1/bdsvd/R/RcppExports.R |only bdsvd-1.2.1/bdsvd/R/bdsvd.R | 399 ++++++++++++++------------ bdsvd-1.2.1/bdsvd/R/ispca.R |only bdsvd-1.2.1/bdsvd/man/bdsvd.Rd | 34 +- bdsvd-1.2.1/bdsvd/man/bdsvd.cov.sim.Rd | 6 bdsvd-1.2.1/bdsvd/man/bdsvd.ht.Rd | 21 - bdsvd-1.2.1/bdsvd/man/bdsvd.structure.Rd | 6 bdsvd-1.2.1/bdsvd/man/cdm.pca.Rd |only bdsvd-1.2.1/bdsvd/man/detect.blocks.Rd | 16 - bdsvd-1.2.1/bdsvd/man/ispca.Rd |only bdsvd-1.2.1/bdsvd/man/prmats.Rd |only bdsvd-1.2.1/bdsvd/man/single.bdsvd.Rd | 11 bdsvd-1.2.1/bdsvd/src |only bdsvd-1.2.1/bdsvd/tests/testthat/test-bdsvd.R | 8 bdsvd-1.2.1/bdsvd/tests/testthat/test-ispca.R |only 23 files changed, 329 insertions(+), 246 deletions(-)
Title: Tools for Storing, Restoring and Searching for R Objects
Description: Data exploration and modelling is a process in which a lot of data
artifacts are produced. Artifacts like: subsets, data aggregates, plots,
statistical models, different versions of data sets and different versions
of results. The more projects we work with the more artifacts are produced
and the harder it is to manage these artifacts. Archivist helps to store
and manage artifacts created in R. Archivist allows you to store selected
artifacts as a binary files together with their metadata and relations.
Archivist allows to share artifacts with others, either through shared
folder or github. Archivist allows to look for already created artifacts by
using it's class, name, date of the creation or other properties. Makes it
easy to restore such artifacts. Archivist allows to check if new artifact
is the exact copy that was produced some time ago. That might be useful
either for testing or caching.
Author: Przemyslaw Biecek [aut, cre],
Marcin Kosinski [aut],
Witold Chodor [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between archivist versions 2.3.8 dated 2024-08-28 and 2.3.9 dated 2026-03-26
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Identifiability of Linear Structural Equation Models
Description: Provides routines to check identifiability of linear structural
equation models and factor analysis models. The routines are based on the
graphical representation of structural equation models.
Author: Rina Foygel Barber [aut],
Mathias Drton [aut],
Miriam Kranzlmueller [aut],
Nils Sturma [cre, aut],
Luca Weihs [aut]
Maintainer: Nils Sturma <nils.sturma@epfl.ch>
Diff between SEMID versions 0.5.0 dated 2026-01-30 and 0.5.1 dated 2026-03-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/factor_analysis_extmID.R | 3 ++- R/factor_analysis_localBBCriterion.R | 2 +- 5 files changed, 15 insertions(+), 10 deletions(-)
Title: 'A5' Discrete Global Grid System
Description: Bindings for the "A5 geospatial index"
<https://a5geo.org/>. 'A5' partitions the Earth's surface into
pentagonal cells across 31 resolution levels using an equal-area
projection onto a dodecahedron. Provides functions for indexing
coordinates to cells, traversing the cell hierarchy, computing cell
boundaries, and compacting/uncompacting cell sets. Powered by the
'A5' 'Rust' crate via 'extendr'.
Author: Hugh Graham [aut, cre],
belian.earth [cph]
Maintainer: Hugh Graham <hugh@belian.earth>
Diff between a5R versions 0.2.0 dated 2026-03-16 and 0.3.1 dated 2026-03-26
DESCRIPTION | 10 - MD5 | 99 ++++++++------- NAMESPACE | 9 + NEWS.md | 29 ++++ R/a5R-package.R | 14 ++ R/arrow.R |only R/boundary.R | 5 R/cell.R | 162 +++++++++++++++++++++++- R/compact.R | 6 R/distance.R | 18 +- R/extendr-wrappers.R | 98 +++++++++------ R/grid.R | 21 +-- R/hierarchy.R | 8 - R/indexing.R | 5 R/info.R | 17 +- R/traversal.R | 6 build/vignette.rds |binary inst/doc/a5R.R | 2 inst/doc/a5R.Rmd | 2 inst/doc/arrow-parquet.R |only inst/doc/arrow-parquet.Rmd |only inst/doc/arrow-parquet.html |only inst/doc/internal-cell-representation.R |only inst/doc/internal-cell-representation.Rmd |only inst/doc/internal-cell-representation.html |only inst/doc/multithreading.Rmd | 2 inst/doc/multithreading.html | 2 man/a5R-package.Rd | 22 +++ man/a5_cell.Rd | 12 + man/a5_cell_area.Rd | 3 man/a5_cell_distance.Rd | 3 man/a5_cell_from_arrow.Rd |only man/a5_u64_to_hex.Rd |only src/rust/src/boundary.rs | 18 +- src/rust/src/cell_info.rs | 39 ++++-- src/rust/src/cell_raw.rs |only src/rust/src/distance.rs | 22 +-- src/rust/src/grid.rs | 43 ++---- src/rust/src/hierarchy.rs | 109 ++++++---------- src/rust/src/indexing.rs | 62 +++------ src/rust/src/lib.rs | 2 src/rust/src/threading.rs | 80 ------------ src/rust/src/traversal.rs | 44 +++--- tests/testthat/test-arrow.R |only tests/testthat/test-cell.R | 188 +++++++++++++++++++++++++++-- tests/testthat/test-compact.R | 15 +- tests/testthat/test-distance.R | 10 + tests/testthat/test-grid.R | 36 ++++- tests/testthat/test-hierarchy.R | 16 ++ tests/testthat/test-indexing.R | 6 tests/testthat/test-info.R | 10 + tests/testthat/test-threads.R | 4 tests/testthat/test-traversal.R | 10 + vignettes/a5R.Rmd | 2 vignettes/arrow-parquet.Rmd |only vignettes/internal-cell-representation.Rmd |only vignettes/multithreading.Rmd | 2 57 files changed, 832 insertions(+), 441 deletions(-)
Title: Geospatial Data and Maps for New South Wales, Australia
Description: Geospatial data for creating maps of New South Wales (NSW),
Australia, and some helpers to work with common problems like normalising
postcodes. Registers its data with 'cartographer'.
Author: Carl Suster [aut, cre, cph] ,
Western Sydney Local Health District, NSW Health [cph]
Maintainer: Carl Suster <carl.suster@sydney.edu.au>
Diff between nswgeo versions 0.5.1 dated 2026-01-19 and 0.6.0 dated 2026-03-26
DESCRIPTION | 14 ++++--- MD5 | 68 +++++++++++++++++----------------- NEWS.md | 8 ++++ R/data.R | 45 +++++++++++++--------- R/sysdata.rda |binary R/zzz.R | 12 +++++- README.md | 8 ++-- data/act.rda |binary data/australia.rda |binary data/covid_cases_nsw.rda |binary data/jbt.rda |binary data/lga_nsw.rda |binary data/lhd.rda |binary data/lhi.rda |binary data/nsw.rda |binary data/phn.rda |binary data/poa_lhd_concordance.rda |binary data/poa_nsw.rda |binary data/postcodes.rda |binary data/states.rda |binary data/suburbs.rda |binary data/sydney.rda |binary inst/COPYRIGHTS | 5 +- man/australia.Rd | 6 +-- man/figures/README-cartographer-1.png |binary man/figures/README-ggplot-1.png |binary man/lhd.Rd | 6 --- man/nsw.Rd | 15 ++++++- man/nsw_admin.Rd | 6 +-- man/nswgeo-package.Rd | 2 - man/phn.Rd | 8 +++- man/poa_lhd_concordance.Rd | 4 +- man/postcodes.Rd | 4 +- man/suburbs.Rd | 2 - tests |only 35 files changed, 125 insertions(+), 88 deletions(-)
Title: Basic Linear Algebra with GPU
Description: GPUs are great resources for data analysis, especially in statistics and linear algebra. Unfortunately, very few packages connect R to the GPU, and none of them are transparent enough to run the computations on the GPU without substantial changes to the code. The maintenance of these packages is cumbersome: several of the earlier attempts have been removed from their respective repositories. It would be desirable to have a properly maintained R package that takes advantage of the GPU with minimal changes to the existing code. We have developed the 'GPUmatrix' package (available on CRAN). 'GPUmatrix' mimics the behavior of the Matrix package and extends R to use the GPU for computations. It includes single(FP32) and double(FP64) precision data types, and provides support for sparse matrices. It is easy to learn, and requires very few code changes to perform the operations on the GPU. 'GPUmatrix' relies on either the 'Torch' or 'Tensorflow' R packages to perform the GPU operations. We ha [...truncated...]
Author: Cesar Lobato-Fernandez [aut, ctb],
Juan A.Ferrer-Bonsoms [aut],
Angel Rubio [aut, cre]
Maintainer: Angel Rubio <arubio@unav.es>
This is a re-admission after prior archival of version 1.0.2 dated 2024-03-01
Diff between GPUmatrix versions 1.0.2 dated 2024-03-01 and 1.0.3 dated 2026-03-26
DESCRIPTION | 20 +- MD5 | 47 +++--- NAMESPACE | 119 +++------------ NEWS.md |only R/IndexingGPUMatrix_tensorflow.R | 4 R/IndexingGPUMatrix_torch.R | 1 R/StatisticalApplications.R | 9 - R/setMethods_tensorflow.R | 28 +++ R/setMethods_torch.R | 28 ++- R/zzz.R | 4 README.md | 40 +++-- build/vignette.rds |binary inst/doc/Vignette.R | 26 +-- inst/doc/Vignette.Rmd | 58 +++++-- inst/doc/Vignette.html | 262 ++++++++++++++++++++++++---------- man/LR_GradientConjugate_gpumatrix.Rd | 2 man/c.GPUmatrix.Rd |only man/density.Rd | 6 man/dim_and_names.Rd | 2 man/fft.Rd | 2 man/gpu.matrix-class.Rd | 2 man/gpu.matrix.Rd | 3 man/matrix-product.Rd | 2 man/solve_gpu.matrix.Rd | 22 +- man/summary.GPUglm.Rd |only vignettes/Vignette.Rmd | 58 +++++-- 26 files changed, 454 insertions(+), 291 deletions(-)
Title: Fundamental Clustering Problems Suite
Description: Over sixty clustering algorithms are provided in this package with consistent input and output, which enables the user to try out algorithms swiftly. Additionally, 26 statistical approaches for the estimation of the number of clusters as well as the mirrored density plot (MD-plot) of clusterability are implemented. The packages is published in Thrun, M.C., Stier Q.: "Fundamental Clustering Algorithms Suite" (2021), SoftwareX, <DOI:10.1016/j.softx.2020.100642>. Moreover, the fundamental clustering problems suite (FCPS) offers a variety of clustering challenges any algorithm should handle when facing real world data, see Thrun, M.C., Ultsch A.: "Clustering Benchmark Datasets Exploiting the Fundamental Clustering Problems" (2020), Data in Brief, <DOI:10.1016/j.dib.2020.105501>.
Author: Michael Thrun [aut, cre, cph] ,
Peter Nahrgang [ctr, ctb],
Felix Pape [ctr, ctb],
Vasyl Pihur [ctb],
Guy Brock [ctb],
Susmita Datta [ctb],
Somnath Datta [ctb],
Luis Winckelmann [com],
Alfred Ultsch [dtc, ctb],
Quirin Stier [ctb, rev]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between FCPS versions 1.3.5 dated 2025-10-30 and 1.3.6 dated 2026-03-26
FCPS-1.3.5/FCPS/R/ADPclustering.R |only FCPS-1.3.5/FCPS/man/ADPclustering.Rd |only FCPS-1.3.6/FCPS/DESCRIPTION | 14 FCPS-1.3.6/FCPS/MD5 | 16 FCPS-1.3.6/FCPS/NAMESPACE | 1 FCPS-1.3.6/FCPS/build/partial.rdb |binary FCPS-1.3.6/FCPS/build/vignette.rds |binary FCPS-1.3.6/FCPS/inst/doc/FCPS.R | 208 - FCPS-1.3.6/FCPS/inst/doc/FCPS.html | 5078 +++++++++++++-------------- FCPS-1.3.6/FCPS/man/DensityPeakClustering.Rd | 6 10 files changed, 2659 insertions(+), 2664 deletions(-)
Title: TK Rplot
Description: Simple mechanism for placing R graphics in a Tk widget.
Author: Luke Tierney [aut, cre]
Maintainer: Luke Tierney <luke-tierney@uiowa.edu>
Diff between tkrplot versions 0.0-30 dated 2025-05-26 and 0.0-32 dated 2026-03-26
DESCRIPTION | 13 ++++++++----- MD5 | 4 ++-- src/tcltkimg.c | 5 +++++ 3 files changed, 15 insertions(+), 7 deletions(-)
Title: Statistical Pattern Recognition and daTing using Archaeological
Artefacts assemblageS
Description: Statistical pattern recognition and dating using archaeological artefacts assemblages.
Package of statistical tools for archaeology.
hclustcompro()/perioclust(): Bellanger Lise, Coulon Arthur, Husi Philippe (2021, ISBN:978-3-030-60103-4).
mapclust(): Bellanger Lise, Coulon Arthur, Husi Philippe (2021) <doi:10.1016/j.jas.2021.105431>.
seriograph(): Desachy Bruno (2004) <doi:10.3406/pica.2004.2396>.
cerardat(): Bellanger Lise, Husi Philippe (2012) <doi:10.1016/j.jas.2011.06.031>.
Author: Arthur Coulon [aut, cre],
Lise Bellanger [aut],
Philippe Husi [aut],
Bruno Desachy [ctb],
Benjamin Martineau [ctb]
Maintainer: Arthur Coulon <arthur-coulon@outlook.fr>
Diff between SPARTAAS versions 1.2.4 dated 2024-06-27 and 1.2.5 dated 2026-03-26
SPARTAAS-1.2.4/SPARTAAS/man/hclustcompro_subdivide.Rd |only SPARTAAS-1.2.5/SPARTAAS/DESCRIPTION | 18 SPARTAAS-1.2.5/SPARTAAS/MD5 | 73 SPARTAAS-1.2.5/SPARTAAS/NAMESPACE | 22 SPARTAAS-1.2.5/SPARTAAS/R/cerardat.R | 22 SPARTAAS-1.2.5/SPARTAAS/R/manage_NA.R |only SPARTAAS-1.2.5/SPARTAAS/R/mapclust.R | 40 SPARTAAS-1.2.5/SPARTAAS/R/perioclust.R | 828 +++++----- SPARTAAS-1.2.5/SPARTAAS/R/zzz.R |only SPARTAAS-1.2.5/SPARTAAS/build/partial.rdb |binary SPARTAAS-1.2.5/SPARTAAS/inst/shiny-examples/cerardat.app/ui.R | 4 SPARTAAS-1.2.5/SPARTAAS/inst/shiny-examples/hclustcompro.app/server.R | 7 SPARTAAS-1.2.5/SPARTAAS/inst/shiny-examples/hclustcompro.app/ui.R | 4 SPARTAAS-1.2.5/SPARTAAS/inst/shiny-examples/map.app/server.R | 25 SPARTAAS-1.2.5/SPARTAAS/inst/shiny-examples/map.app/ui.R | 4 SPARTAAS-1.2.5/SPARTAAS/inst/shiny-examples/serio.app/ui.R | 2 SPARTAAS-1.2.5/SPARTAAS/man/CAdist.Rd | 4 SPARTAAS-1.2.5/SPARTAAS/man/adjacency.Rd | 4 SPARTAAS-1.2.5/SPARTAAS/man/arrondi.Rd | 2 SPARTAAS-1.2.5/SPARTAAS/man/cerardat_app.Rd | 4 SPARTAAS-1.2.5/SPARTAAS/man/cerardat_estim_nf.Rd | 1 SPARTAAS-1.2.5/SPARTAAS/man/datacancer.Rd | 1 SPARTAAS-1.2.5/SPARTAAS/man/dataceram.Rd | 1 SPARTAAS-1.2.5/SPARTAAS/man/datangkor.Rd | 1 SPARTAAS-1.2.5/SPARTAAS/man/datarcheo.Rd | 1 SPARTAAS-1.2.5/SPARTAAS/man/hclust.Rd | 72 SPARTAAS-1.2.5/SPARTAAS/man/hclustcompro.Rd | 62 SPARTAAS-1.2.5/SPARTAAS/man/hclustcompro_app.Rd | 70 SPARTAAS-1.2.5/SPARTAAS/man/hclustcompro_cutree.Rd |only SPARTAAS-1.2.5/SPARTAAS/man/hclustcompro_select_alpha.Rd | 20 SPARTAAS-1.2.5/SPARTAAS/man/mapclust.Rd | 1 SPARTAAS-1.2.5/SPARTAAS/man/mapclust_app.Rd | 12 SPARTAAS-1.2.5/SPARTAAS/man/mapclust_cut_tree.Rd | 1 SPARTAAS-1.2.5/SPARTAAS/man/optim_select_alpha.Rd |only SPARTAAS-1.2.5/SPARTAAS/man/overlap.Rd | 4 SPARTAAS-1.2.5/SPARTAAS/man/perioclust.Rd |only SPARTAAS-1.2.5/SPARTAAS/man/perioclust_subdivide.Rd |only SPARTAAS-1.2.5/SPARTAAS/man/plot.cerardat_obj.Rd | 40 SPARTAAS-1.2.5/SPARTAAS/man/serio_app.Rd | 4 SPARTAAS-1.2.5/SPARTAAS/man/seriograph.Rd | 4 SPARTAAS-1.2.5/SPARTAAS/man/timerange.Rd | 4 41 files changed, 695 insertions(+), 667 deletions(-)
Title: Compare Human Performance to Sampling Algorithms
Description: Understand human performance from the perspective of sampling, both looking at how people generate samples and how people use the samples they have generated. A longer overview and other resources can be found at <https://sampling.warwick.ac.uk>.
Author: Lucas Castillo [aut, cre, cph] ,
Yun-Xiao Li [aut, cph] ,
Adam N Sanborn [aut, cph] ,
European Research Council [fnd]
Maintainer: Lucas Castillo <lucas.castillo@warwick.ac.uk>
Diff between samplr versions 1.1.1 dated 2026-02-20 and 1.1.2 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 6 ++++++ R/Z_identities.R | 8 ++++---- build/partial.rdb |binary inst/doc/custom-density-functions.html | 16 ++++++++-------- inst/doc/multivariate-mixtures.html | 8 ++++---- inst/doc/samplr.Rmd | 2 +- inst/doc/samplr.html | 2 +- inst/doc/time-comparisons.html | 24 ++++++++++++------------ vignettes/samplr.Rmd | 2 +- 11 files changed, 50 insertions(+), 44 deletions(-)
More information about edgarfundamentals at CRAN
Permanent link
Title: 'DataSHIELD' Client for 'MOLGENIS Armadillo'
Description: 'DataSHIELD' is an infrastructure and series of R packages that
enables the remote and 'non-disclosive' analysis of sensitive research data.
This package is the 'DataSHIELD' interface implementation to analyze data
shared on a 'MOLGENIS Armadillo' server. 'MOLGENIS Armadillo' is a
light-weight 'DataSHIELD' server using a file store and an 'RServe' server.
Author: Mariska Slofstra [aut, cre] ,
Sido Haakma [aut] ,
Tommy de Boer [aut] ,
Fleur Kelpin [aut] ,
MOLGENIS org [cph, fnd]
Maintainer: Mariska Slofstra <m.k.slofstra@umcg.nl>
Diff between DSMolgenisArmadillo versions 3.0.2 dated 2025-12-06 and 4.0.1 dated 2026-03-26
DSMolgenisArmadillo-3.0.2/DSMolgenisArmadillo/man/armadillo.get_token.Rd |only DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/DESCRIPTION | 10 - DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/MD5 | 45 +++++--- DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/NAMESPACE | 3 DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/NEWS.md | 5 DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/R/ArmadilloConnection.R | 40 ++++++- DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/R/ArmadilloDriver.R | 2 DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/R/ArmadilloOAuth.R | 24 ++-- DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/R/DSMolgenisArmadillo-defunct.R |only DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/R/DSMolgenisArmadillo-package.R | 1 DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/R/utils.R | 20 ++- DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/inst/doc/DSMolgenisArmadillo.html | 5 DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/inst/doc/development.html | 5 DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/inst/doc/workspaces.html | 5 DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/man/DSMolgenisArmadillo-defunct.Rd |only DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/man/armadillo.Rd | 2 DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/man/dsGetInfo-ArmadilloConnection-method.Rd | 6 - DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/man/dsGetInfo-ArmadilloDriver-method.Rd | 2 DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/man/dsGetInfo-ArmadilloResult-method.Rd | 4 DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/man/dsRestoreWorkspace-ArmadilloConnection-method.Rd |only DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/man/figures/lifecycle-defunct.svg |only DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/man/figures/lifecycle-deprecated.svg |only DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/man/figures/lifecycle-experimental.svg |only DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/man/figures/lifecycle-stable.svg |only DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/man/figures/lifecycle-superseded.svg |only DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/tests/testthat/test-ArmadilloConnection.R | 51 ++++++++++ DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/tests/testthat/test-ArmadilloOAuth.R | 24 ---- DSMolgenisArmadillo-4.0.1/DSMolgenisArmadillo/tests/testthat/test-utils.R | 14 ++ 28 files changed, 185 insertions(+), 83 deletions(-)
More information about DSMolgenisArmadillo at CRAN
Permanent link
Title: Canonical Correlations and Tests of Independence
Description: A simple interface for multivariate correlation analysis that unifies various classical
statistical procedures including t-tests, tests in univariate and multivariate linear models,
parametric and nonparametric tests for correlation, Kruskal-Wallis tests, common approximate
versions of Wilcoxon rank-sum and signed rank tests, chi-squared tests of independence, score
tests of particular hypotheses in generalized linear models, canonical correlation analysis and
linear discriminant analysis.
Author: Robert Schlicht [aut, cre]
Maintainer: Robert Schlicht <robert.schlicht@tu-dresden.de>
Diff between cctest versions 2.3.1 dated 2026-02-25 and 2.3.2 dated 2026-03-26
DESCRIPTION | 6 ++--- MD5 | 6 ++--- build/partial.rdb |binary man/cctest.Rd | 57 ++++++++++++++++++++++++++---------------------------- 4 files changed, 34 insertions(+), 35 deletions(-)
Title: Armadillo Client for the Armadillo Service
Description: A set of functions to manage data shared on a
'MOLGENIS Armadillo' server.
Author: Mariska Slofstra [aut, cre] ,
Sido Haakma [aut] ,
Tommy de Boer [aut] ,
Fleur Kelpin [aut] ,
Morris Swertz [aut] ,
Tim Cadman [aut]
Maintainer: Mariska Slofstra <m.k.slofstra@umcg.nl>
Diff between MolgenisArmadillo versions 2.9.3 dated 2025-12-06 and 3.0.0 dated 2026-03-26
MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/armadillo.get_token.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-add_slash_if_missing.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-compress_resource.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-compress_table.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-format_api_posts.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-get_linkfile_content.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-load_linked_table.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-load_resource.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-load_table.Rd |only MolgenisArmadillo-3.0.0/MolgenisArmadillo/DESCRIPTION | 8 - MolgenisArmadillo-3.0.0/MolgenisArmadillo/MD5 | 47 +++---- MolgenisArmadillo-3.0.0/MolgenisArmadillo/NAMESPACE | 3 MolgenisArmadillo-3.0.0/MolgenisArmadillo/NEWS.md | 4 MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/MolgenisArmadillo-defunct.R |only MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/MolgenisArmadillo-package.R | 1 MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/auth.R | 66 ++++++++-- MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/resource.R | 2 MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/subset.R | 4 MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/table.R | 4 MolgenisArmadillo-3.0.0/MolgenisArmadillo/README.md | 2 MolgenisArmadillo-3.0.0/MolgenisArmadillo/inst/doc/MolgenisArmadillo.html | 5 MolgenisArmadillo-3.0.0/MolgenisArmadillo/inst/doc/create_resources.html | 5 MolgenisArmadillo-3.0.0/MolgenisArmadillo/inst/doc/creating_data_subsets.html | 5 MolgenisArmadillo-3.0.0/MolgenisArmadillo/inst/doc/install_packages.html | 5 MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/MolgenisArmadillo-defunct.Rd |only MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/armadillo.create_project.Rd | 10 - MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/armadillo.login.Rd | 6 MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/armadillo.subset.Rd | 10 - MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/armadillo.subset_definition.Rd | 8 - MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/figures |only MolgenisArmadillo-3.0.0/MolgenisArmadillo/tests/testthat/test-auth.R |only 31 files changed, 122 insertions(+), 73 deletions(-)
More information about MolgenisArmadillo at CRAN
Permanent link
Title: Tests for Geophysical Eigenvalues
Description: The eigenvalues of observed symmetric matrices are often of intense scientific interest. This package offers single sample tests for the eigenvalues of the population mean or the eigenvalue-multiplicity of the population mean. For k-samples, this package offers tests for equal eigenvalues between samples. Included is support for matrices with constraints common to geophysical tensors (constant trace, sum of squared eigenvalues, or both) and eigenvectors are usually considered nuisance parameters. Pivotal bootstrap methods enable these tests to have good performance for small samples (n=15 for 3x3 matrices). These methods were developed and studied by Hingee, Scealy and Wood (2026, <doi:10.1080/01621459.2025.2606381>). Also available is a 2-sample test using a Gaussian orthogonal ensemble approximation and an eigenvalue-multiplicity test that assumes orthogonally-invariant covariance.
Author: Kassel Liam Hingee [aut, cre] ,
Art B. Owen [cph] ,
Board of Trustees Leland Stanford Junior University [cph]
Maintainer: Kassel Liam Hingee <kassel.hingee@gmail.com>
Diff between TFORGE versions 0.1.16 dated 2025-12-12 and 0.1.17 dated 2026-03-26
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- NEWS.md | 3 +++ README.md | 4 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 +++- inst/REFERENCES.bib | 3 ++- inst/doc/Gonjo_demo.html | 2 +- man/TFORGE-package.Rd | 4 ++-- 10 files changed, 28 insertions(+), 22 deletions(-)
Title: Statistical Analysis of Point Processes
Description: Functions for statistical analysis of point processes.
Author: Yoshinori Kawasaki [aut, cre],
Junji Nakano [aut],
Masami Saga [aut],
The Institute of Statistical Mathematics [cph, fnd]
Maintainer: Yoshinori Kawasaki <kawasaki@ism.ac.jp>
Diff between SAPP versions 1.0.9-1 dated 2023-06-01 and 1.0.9-4 dated 2026-03-26
SAPP-1.0.9-1/SAPP/inst/AUTHORS |only SAPP-1.0.9-4/SAPP/DESCRIPTION | 20 ++- SAPP-1.0.9-4/SAPP/MD5 | 48 ++++---- SAPP-1.0.9-4/SAPP/NAMESPACE | 24 ++-- SAPP-1.0.9-4/SAPP/NEWS.md | 182 ++++++++++++++++--------------- SAPP-1.0.9-4/SAPP/build/vignette.rds |binary SAPP-1.0.9-4/SAPP/data/Brastings.rda |binary SAPP-1.0.9-4/SAPP/data/PProcess.rda |binary SAPP-1.0.9-4/SAPP/data/PoissonData.rda |binary SAPP-1.0.9-4/SAPP/data/SelfExcit.rda |binary SAPP-1.0.9-4/SAPP/data/main2003JUL26.rda |binary SAPP-1.0.9-4/SAPP/data/res2003JUL26.rda |binary SAPP-1.0.9-4/SAPP/inst/COPYRIGHTS |only SAPP-1.0.9-4/SAPP/inst/doc/SAPP.pdf |binary SAPP-1.0.9-4/SAPP/src/aftpoi.f | 148 +++++++++++++++++-------- SAPP-1.0.9-4/SAPP/src/comsub.f | 14 ++ SAPP-1.0.9-4/SAPP/src/eptrenf.f | 113 ++++++++++++------- SAPP-1.0.9-4/SAPP/src/etas.f | 50 ++++++-- SAPP-1.0.9-4/SAPP/src/etasimf.f | 3 SAPP-1.0.9-4/SAPP/src/linlinf.f | 18 ++- SAPP-1.0.9-4/SAPP/src/linsimf.f | 8 + SAPP-1.0.9-4/SAPP/src/pgraphf.f | 21 +++ SAPP-1.0.9-4/SAPP/src/ptspecf.f | 7 + SAPP-1.0.9-4/SAPP/src/raftpoi.f | 9 + SAPP-1.0.9-4/SAPP/src/retas.f | 4 SAPP-1.0.9-4/SAPP/src/simbvhf.f | 6 + 26 files changed, 441 insertions(+), 234 deletions(-)
Title: Event/Timeline Prediction Model Based on Piecewise Exponential
Description: Efficient algorithm for estimating piecewise exponential hazard models for right-censored data, and is useful for reliable power calculation, study design, and event/timeline prediction for study monitoring.
Author: Tianchen Xu [aut, cre]
Maintainer: Tianchen Xu <zjph602xutianchen@gmail.com>
Diff between PwePred versions 1.1.1 dated 2026-03-24 and 1.1.2 dated 2026-03-26
DESCRIPTION | 10 +++++----- MD5 | 31 ++++++++++++++++--------------- R/acc.R | 30 ++++++++++++------------------ R/fitting.R | 10 +++++----- inst/NEWS.Rd | 9 ++++++++- man/boot_fit_pwexpm.Rd | 2 +- man/boot_fit_pwexpm_surv.Rd | 6 ++---- man/coef.Rd | 4 ++-- man/confint.Rd |only man/cv_fit_pwexpm.Rd | 4 ++-- man/cv_fit_pwexpm_surv.Rd | 3 +-- man/fit_pwexpm.Rd | 2 +- man/fit_pwexpm_surv.Rd | 4 +--- man/plot_event.Rd | 2 +- man/plot_km.Rd | 2 +- man/predict.Rd | 6 +----- man/sim_followup.Rd | 1 - 17 files changed, 59 insertions(+), 67 deletions(-)
Title: Simulation and Estimation of the Neyman-Scott Type Spatial
Cluster Models
Description: Simulation and estimation for Neyman-Scott spatial cluster point
process models and their extensions, based on the methodology in Tanaka, Ogata,
and Stoyan (2008) <doi:10.1002/bimj.200610339>. To estimate parameters by the
simplex method, parallel computation using 'OpenMP' application programming
interface is available. For more details see Tanaka, Saga and Nakano
<doi:10.18637/jss.v098.i06>.
Author: Ushio Tanaka [aut, cre],
Junji Nakano [aut],
Masami Saga [aut]
Maintainer: Ushio Tanaka <utanaka@omu.ac.jp>
Diff between NScluster versions 1.3.6-4 dated 2025-04-30 and 1.3.6-5 dated 2026-03-26
NScluster-1.3.6-4/NScluster/src/NScluster.h |only NScluster-1.3.6-5/NScluster/DESCRIPTION | 24 ++++----- NScluster-1.3.6-5/NScluster/MD5 | 51 ++++++++++----------- NScluster-1.3.6-5/NScluster/NEWS.md | 5 ++ NScluster-1.3.6-5/NScluster/build/partial.rdb |binary NScluster-1.3.6-5/NScluster/build/vignette.rds |binary NScluster-1.3.6-5/NScluster/inst/COPYRIGHTS | 5 -- NScluster-1.3.6-5/NScluster/inst/doc/NScluster.pdf |binary NScluster-1.3.6-5/NScluster/src/Palm-IPf.f | 2 NScluster-1.3.6-5/NScluster/src/Palm-Thomasf.f | 2 NScluster-1.3.6-5/NScluster/src/Palm-TypeAf.f | 2 NScluster-1.3.6-5/NScluster/src/Palm-TypeBf.f | 2 NScluster-1.3.6-5/NScluster/src/Palm-TypeCf.f | 2 NScluster-1.3.6-5/NScluster/src/Simplex-IPf.f | 2 NScluster-1.3.6-5/NScluster/src/Simplex-Thomasf.f | 2 NScluster-1.3.6-5/NScluster/src/Simplex-TypeAf.f | 2 NScluster-1.3.6-5/NScluster/src/Simplex-TypeBf.f | 2 NScluster-1.3.6-5/NScluster/src/Simplex-TypeCf.f | 2 NScluster-1.3.6-5/NScluster/src/Simulate-IPf.f | 2 NScluster-1.3.6-5/NScluster/src/Simulate-Thomasf.f | 2 NScluster-1.3.6-5/NScluster/src/Simulate-TypeAf.f | 2 NScluster-1.3.6-5/NScluster/src/Simulate-TypeBf.f | 2 NScluster-1.3.6-5/NScluster/src/Simulate-TypeCf.f | 2 NScluster-1.3.6-5/NScluster/src/comsub.f | 1 NScluster-1.3.6-5/NScluster/src/comsubOMP.f | 1 NScluster-1.3.6-5/NScluster/src/init.c | 22 --------- NScluster-1.3.6-5/NScluster/src/regF77.h | 22 --------- 27 files changed, 43 insertions(+), 118 deletions(-)
Title: Categorical Data Analysis Program Package
Description: Categorical data analysis by AIC. The methodology is described in
Sakamoto (1992) <ISBN 978-0-7923-1429-5>.
Author: Yoshinori Kawasaki [aut, cre],
Junji Nakano [aut],
Masami Saga [aut],
The Institute of Statistical Mathematics [cph, fnd]
Maintainer: Yoshinori Kawasaki <kawasaki@ism.ac.jp>
Diff between catdap versions 1.3.7 dated 2023-05-31 and 1.3.7-4 dated 2026-03-26
catdap-1.3.7-4/catdap/DESCRIPTION | 20 ++-- catdap-1.3.7-4/catdap/MD5 | 29 ++--- catdap-1.3.7-4/catdap/NEWS.md | 10 ++ catdap-1.3.7-4/catdap/data/HealthData.rda |binary catdap-1.3.7-4/catdap/data/HealthData.txt.gz |binary catdap-1.3.7-4/catdap/data/HelloGoodbye.csv.gz |binary catdap-1.3.7-4/catdap/data/HelloGoodbye.rda |binary catdap-1.3.7-4/catdap/data/JNcharacter.rda |binary catdap-1.3.7-4/catdap/data/MissingHealthData.rda |binary catdap-1.3.7-4/catdap/data/datalist | 8 - catdap-1.3.7-4/catdap/inst/COPYRIGHTS |only catdap-1.3.7-4/catdap/src/catdap1f.f | 11 +- catdap-1.3.7-4/catdap/src/catdap2mf.f | 113 +++++++++++++---------- catdap-1.3.7-4/catdap/src/init.c | 22 ---- catdap-1.3.7-4/catdap/src/regF77.h | 21 ---- catdap-1.3.7/catdap/inst/AUTHORS |only catdap-1.3.7/catdap/src/catdap.h |only 17 files changed, 113 insertions(+), 121 deletions(-)
Title: Causal Inference with Tree-Based Machine Learning Algorithms
Description: Estimating heterogeneous treatment effects with tree-based machine
learning algorithms and visualizing estimated results in flexible and
presentation-ready ways. For more information, see Brand, Xu, Koch,
and Geraldo (2021) <doi:10.1177/0081175021993503>. Our current package
first started as a fork of the 'causalTree' package on 'GitHub' and we
greatly appreciate the authors for their extremely useful and free package.
Author: Jiahui Xu [cre, aut],
Tanvi Shinkre [aut],
Jennie Brand [aut]
Maintainer: Jiahui Xu <jiahuixu@ucla.edu>
Diff between htetree versions 0.1.20 dated 2025-01-13 and 0.1.23 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/causalTree_callback.c | 16 ++++------------ 3 files changed, 9 insertions(+), 17 deletions(-)
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <d [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Kurt Hornik [aut] ,
Carolin Strobl [aut] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.3-19 dated 2026-03-10 and 1.3-20 dated 2026-03-26
DESCRIPTION | 8 +++---- MD5 | 36 ++++++++++++++++----------------- build/partial.rdb |binary inst/NEWS.Rd | 8 +++++++ inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary src/Classes.c | 11 +++++++++- src/Classes.h | 2 + src/Convenience.c | 33 +++++++++++++++++++++---------- src/Distributions.c | 12 ++++++----- src/IndependenceTest.c | 11 +++++----- src/Memory.c | 15 ++++++++++---- src/Node.c | 52 ++++++++++++++++++++++++++++--------------------- src/Predict.c | 20 +++++++++++------- src/RandomForest.c | 34 +++++++++++++++++++------------- src/Splits.c | 9 +------- src/SurrogateSplits.c | 20 +++++++++++------- src/TreeGrow.c | 25 ++++++++++++++--------- src/Utils.c | 36 +++++++++++++++++++++++++++++++-- 19 files changed, 214 insertions(+), 118 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.5.0 dated 2026-03-14 and 1.5.1 dated 2026-03-26
duckdb-1.5.0/duckdb/R/cpp12.R |only duckdb-1.5.1/duckdb/DESCRIPTION | 10 - duckdb-1.5.1/duckdb/MD5 | 71 +++++----- duckdb-1.5.1/duckdb/NEWS.md | 17 ++ duckdb-1.5.1/duckdb/R/Driver.R | 7 duckdb-1.5.1/duckdb/R/backend-dbplyr__duckdb_connection.R | 2 duckdb-1.5.1/duckdb/R/convert.R | 16 ++ duckdb-1.5.1/duckdb/R/csv.R | 2 duckdb-1.5.1/duckdb/R/dbConnect__duckdb_driver.R | 10 + duckdb-1.5.1/duckdb/R/extensions.R |only duckdb-1.5.1/duckdb/R/package.R |only duckdb-1.5.1/duckdb/R/sql.R | 2 duckdb-1.5.1/duckdb/R/version.R | 2 duckdb-1.5.1/duckdb/cleanup | 7 duckdb-1.5.1/duckdb/cleanup.win | 7 duckdb-1.5.1/duckdb/configure | 8 - duckdb-1.5.1/duckdb/inst/include/cpp11/r_vector.hpp | 1 duckdb-1.5.1/duckdb/inst/include/cpp11/sexp.hpp | 6 duckdb-1.5.1/duckdb/man/backend-duckdb.Rd | 2 duckdb-1.5.1/duckdb/man/duckdb.Rd | 12 + duckdb-1.5.1/duckdb/man/duckdb_connection-class.Rd | 8 - duckdb-1.5.1/duckdb/man/duckdb_driver-class.Rd | 2 duckdb-1.5.1/duckdb/man/duckdb_read_csv.Rd | 2 duckdb-1.5.1/duckdb/man/duckdb_result-class.Rd | 2 duckdb-1.5.1/duckdb/src/Makevars.duckdb | 7 duckdb-1.5.1/duckdb/src/convert.cpp | 11 + duckdb-1.5.1/duckdb/src/duckdb.tar.xz |binary duckdb-1.5.1/duckdb/src/include/convert.hpp | 9 - duckdb-1.5.1/duckdb/src/include/rapi.hpp | 2 duckdb-1.5.1/duckdb/src/register.cpp | 8 - duckdb-1.5.1/duckdb/src/statement.cpp | 2 duckdb-1.5.1/duckdb/src/transform.cpp | 14 + duckdb-1.5.1/duckdb/src/types.cpp | 1 duckdb-1.5.1/duckdb/src/utils.cpp | 4 duckdb-1.5.1/duckdb/tests/testthat/setup.R |only duckdb-1.5.1/duckdb/tests/testthat/test-arrow.R | 6 duckdb-1.5.1/duckdb/tests/testthat/test-geometry.R |only duckdb-1.5.1/duckdb/tests/testthat/test-numeric.R | 1 duckdb-1.5.1/duckdb/tests/testthat/test-tbl__duckdb_connection.R | 5 39 files changed, 181 insertions(+), 85 deletions(-)
Title: Estimating Remaining Useful Life with Linear Mixed Effects
Models
Description: Provides tools for estimating the Remaining Useful Life (RUL) of degrading systems using linear mixed-effects models and creating a health index. It supports both univariate and multivariate degradation signals. For multivariate inputs, the signals are merged into a univariate health index prior to modeling. Linear and exponential degradation trajectories are supported (the latter using a log transformation). Remaining Useful Life (RUL) distributions are estimated using Bayesian updating for new units, enabling on-site predictive maintenance. Based on the methodology of Liu and Huang (2016) <doi:10.1109/TASE.2014.2349733>.
Author: Pedro Abraham Montoya Calzada [aut, cre, cph] ,
Rogelio Salinas Gutierrez [aut, cph] ,
Silvia Rodriguez-Narciso [aut, cph] ,
Netzahualcoyotl Castaneda-Leyva [aut, cph]
Maintainer: Pedro Abraham Montoya Calzada <pedroabraham.montoya@gmail.com>
Diff between degradr versions 1.0.1 dated 2025-10-01 and 1.0.2 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/fit_healthindex.R | 1 + R/fit_model.R | 1 + 4 files changed, 8 insertions(+), 6 deletions(-)
Title: Identifies Package Differences
Description: Identifies differences between
versions of a package. Specifically, the functions help
determine if there are breaking changes from one package version
to the next. The package also includes a stability assessment,
to help you determine the overall stability of a package, or even
an entire repository.
Author: David Bosak [aut, cre],
Brian Varney [ctb],
Kevin Putschko [ctb]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between pkgdiff versions 1.0.1 dated 2025-12-16 and 1.0.2 dated 2026-03-25
DESCRIPTION | 6 MD5 | 20 +- NEWS.md | 4 R/stability.R | 50 +++-- tests/testthat/test-diff.R | 133 +++++++++------ tests/testthat/test-pkginfo.R | 354 +++++++++++++++++++++++----------------- tests/testthat/test-pkgrepo.R | 14 - tests/testthat/test-reports.R | 64 ++++--- tests/testthat/test-stability.R | 176 ++++++++++++------- tests/testthat/test-summary.R | 83 ++++++--- tests/testthat/test-utilities.R | 297 +++++++++++++++++++++------------ 11 files changed, 738 insertions(+), 463 deletions(-)
Title: Create Maps from a Column of Place Names
Description: Mapping tools that convert place names to coordinates on the fly.
These 'ggplot2' extensions make maps from a data frame where one of the
columns contains place names, without having to directly work with the
underlying geospatial data and tools. The corresponding map data must be
registered with 'cartographer' either by the user or by another package.
Author: Carl Suster [aut, cre, cph] ,
Western Sydney Local Health District, NSW Health [cph]
Maintainer: Carl Suster <carl.suster@sydney.edu.au>
Diff between ggautomap versions 0.3.3 dated 2025-09-10 and 0.4.0 dated 2026-03-25
ggautomap-0.3.3/ggautomap/R/configure_inset.R |only ggautomap-0.3.3/ggautomap/man/configure_inset.Rd |only ggautomap-0.4.0/ggautomap/DESCRIPTION | 27 - ggautomap-0.4.0/ggautomap/MD5 | 66 +- ggautomap-0.4.0/ggautomap/NAMESPACE | 17 ggautomap-0.4.0/ggautomap/NEWS.md | 13 ggautomap-0.4.0/ggautomap/R/aaa.R | 46 + ggautomap-0.4.0/ggautomap/R/choropleth.R | 68 +- ggautomap-0.4.0/ggautomap/R/coord_automap.R | 6 ggautomap-0.4.0/ggautomap/R/geom_boundaries.R | 107 ++-- ggautomap-0.4.0/ggautomap/R/geom_centroids.R | 49 + ggautomap-0.4.0/ggautomap/R/geoscatter.R | 187 ++++--- ggautomap-0.4.0/ggautomap/R/ggautomap-package.R | 4 ggautomap-0.4.0/ggautomap/R/position_circle_repel.R | 32 - ggautomap-0.4.0/ggautomap/R/stat_automap.R | 28 - ggautomap-0.4.0/ggautomap/R/stat_automap_coords.R | 47 + ggautomap-0.4.0/ggautomap/README.md | 6 ggautomap-0.4.0/ggautomap/build/vignette.rds |binary ggautomap-0.4.0/ggautomap/inst/doc/ggautomap.R | 169 ++++-- ggautomap-0.4.0/ggautomap/inst/doc/ggautomap.Rmd | 169 ++++-- ggautomap-0.4.0/ggautomap/inst/doc/ggautomap.html | 265 ++++++---- ggautomap-0.4.0/ggautomap/man/choropleth.Rd | 23 ggautomap-0.4.0/ggautomap/man/coord_automap.Rd | 2 ggautomap-0.4.0/ggautomap/man/figures/README-example-basic-1.png |binary ggautomap-0.4.0/ggautomap/man/figures/README-example-basic-2.png |binary ggautomap-0.4.0/ggautomap/man/geom_boundaries.Rd | 12 ggautomap-0.4.0/ggautomap/man/geom_centroids.Rd | 12 ggautomap-0.4.0/ggautomap/man/geoscatter.Rd | 13 ggautomap-0.4.0/ggautomap/man/ggautomap-package.Rd | 4 ggautomap-0.4.0/ggautomap/man/position_circle_repel.Rd | 17 ggautomap-0.4.0/ggautomap/man/reexports.Rd | 6 ggautomap-0.4.0/ggautomap/man/stat_automap.Rd | 10 ggautomap-0.4.0/ggautomap/man/stat_automap_coords.Rd | 16 ggautomap-0.4.0/ggautomap/tests |only ggautomap-0.4.0/ggautomap/vignettes/ggautomap.Rmd | 169 ++++-- 35 files changed, 1086 insertions(+), 504 deletions(-)
Title: Software for Evaluating Counterfactuals
Description: Inferences about counterfactuals are essential for prediction,
answering what if questions, and estimating causal effects.
However, when the counterfactuals posed are too far from the data at
hand, conclusions drawn from well-specified statistical analyses
become based largely on speculation hidden in convenient modeling
assumptions that few would be willing to defend. Unfortunately,
standard statistical approaches assume the veracity of the model
rather than revealing the degree of model-dependence, which makes this
problem hard to detect. 'WhatIf' offers easy-to-apply methods to
evaluate counterfactuals that do not require sensitivity testing over
specified classes of models. If an analysis fails the tests offered
here, then we know that substantive inferences will be sensitive to at
least some modeling choices that are not based on empirical evidence,
no matter what method of inference one chooses to use. 'WhatIf'
implements the methods for evaluating counterfactuals discussed in
Ga [...truncated...]
Author: Heather Stoll [aut],
Gary King [aut],
Langche Zeng [aut],
Christopher Gandrud [aut],
Ben Sabath [aut],
Soubhik Barari [ctb],
Katalina Toth [cre]
Maintainer: Katalina Toth <katalinaltoth@gmail.com>
This is a re-admission after prior archival of version 1.5-10 dated 2020-11-14
Diff between WhatIf versions 1.5-10 dated 2020-11-14 and 1.5-11 dated 2026-03-25
DESCRIPTION | 48 ++++++++++++++++++++++---------- MD5 | 14 ++++----- NEWS.md | 35 +++++++++++++++-------- R/whatif.R | 2 - data/peacecf.RData |binary data/peacef.RData |binary man/whatif.Rd | 5 +-- tests/testthat/test-whatif_convexhull.R | 13 ++++---- 8 files changed, 72 insertions(+), 45 deletions(-)
Title: Solar Potential Calculation for Point Clouds using 'VOSTOK'
Description: Calculate solar potential for LiDAR point clouds using the 'VOSTOK'
(Voxel Octree Solar Toolkit) algorithm. This R program provides an interface to
the original 'VOSTOK' C++ implementation by Bechtold and Hofle (2020), enabling
efficient ray casting and solar position algorithms to compute solar irradiance
for each point while accounting for shadowing effects. Integrates seamlessly with
the 'lidR' package for LiDAR data processing workflows. The original 'VOSTOK'
toolkit is available at <doi:10.11588/data/QNA02B>.
Author: Andrew J. Sanchez Meador [aut, cre],
Sebastian Bechtold [aut] ,
Bernhard Hofle [aut]
Maintainer: Andrew J. Sanchez Meador <andrew.sanchezmeador@nau.edu>
Diff between vostokR versions 0.2.0 dated 2026-03-23 and 0.2.1 dated 2026-03-25
DESCRIPTION | 10 ++--- MD5 | 14 +++---- man/compute_normals_cpp.Rd | 52 +++++++++++++------------- man/compute_normals_with_features_cpp.Rd | 62 +++++++++++++++---------------- src/Makevars.win | 4 +- src/ShadowCalc.cpp | 2 + src/add_normals_fast.cpp | 8 ++-- src/rcpp_interface.cpp | 34 ++++++----------- 8 files changed, 90 insertions(+), 96 deletions(-)
Title: Interface to the 'ValidMind' Platform
Description: Deploy, execute, and analyze the results of models hosted on the
'ValidMind' Platform <https://validmind.ai>. This package interfaces with the
'Python' Library API in order to allow advanced diagnostics and insight
into trained models all from an 'R' environment.
Author: Andres Rodriguez [aut, cre, cph]
Maintainer: Andres Rodriguez <andres@validmind.ai>
Diff between validmind versions 0.1.2 dated 2024-11-07 and 2.12.5 dated 2026-03-25
DESCRIPTION | 16 ++--- MD5 | 17 +++--- NAMESPACE | 2 R/custom_tests.R | 6 +- R/platform.R | 56 +++++++++++++++++--- README.md | 121 +++++++++++++++++++++++++++++++++++++++++--- man/py_print.Rd |only man/register_custom_test.Rd | 4 - man/run_custom_test.Rd | 2 man/vm.Rd | 15 +++-- 10 files changed, 198 insertions(+), 41 deletions(-)
Title: Estimating Infection Rates from Serological Data
Description: Translates antibody levels measured in cross-sectional
population samples into estimates of the frequency with which
seroconversions (infections) occur in the sampled populations.
Replaces the previous `seroincidence` package.
Author: Kristina Lai [aut, cre],
Chris Orwa [aut],
Kwan Ho Lee [ctb],
Peter Teunis [aut, cph] ,
Kristen Aiemjoy [aut],
Douglas Ezra Morrison [aut]
Maintainer: Kristina Lai <kwlai@ucdavis.edu>
This is a re-admission after prior archival of version 1.4.0 dated 2025-12-11
Diff between serocalculator versions 1.4.0 dated 2025-12-11 and 1.4.1 dated 2026-03-25
DESCRIPTION | 20 MD5 | 93 ++- NAMESPACE | 4 NEWS.md | 58 ++ R/autoplot.seroincidence.by.R | 10 R/compare_seroincidence.R |only R/compute_cluster_robust_var.R |only R/est_seroincidence.R | 132 ++++- R/est_seroincidence_by.R | 39 + R/graph_seroresponse_model_1.R | 2 R/load_noise_params.R | 53 +- R/load_sr_params.R | 49 + R/sim_pop_data_multi.R | 38 + R/stratify_data.R | 48 + R/summary.seroincidence.R | 34 + R/utils.R | 71 +- R/validate_cluster_params.R |only README.md | 4 inst/WORDLIST | 17 inst/examples/exm-analyze_sims.R | 2 inst/examples/exm-autoplot.sim_results.R | 2 inst/examples/exm-compare_seroincidence.R |only inst/examples/exm-sim_pop_data_multi.R | 3 man/analyze_sims.Rd | 2 man/autoplot.seroincidence.by.Rd | 2 man/autoplot.sim_results.Rd | 2 man/compare_seroincidence.Rd |only man/est_seroincidence.Rd | 43 + man/est_seroincidence_by.Rd | 16 man/load_noise_params.Rd | 4 man/serocalculator-package.Rd | 2 man/sim_pop_data_multi.Rd | 5 man/stratify_data.Rd | 4 man/summary.seroincidence.Rd | 5 tests/testthat/_snaps/autoplot.seroincidence.by/seroinc-plot.svg | 259 +++++----- tests/testthat/_snaps/compare_seroincidence.md |only tests/testthat/_snaps/darwin |only tests/testthat/_snaps/est_seroincidence.md | 11 tests/testthat/_snaps/graph_seroresponse_model_1 |only tests/testthat/_snaps/linux |only tests/testthat/_snaps/print.summary.seroincidence.by.md | 14 tests/testthat/_snaps/summary.seroincidence.by.md | 37 - tests/testthat/_snaps/windows |only tests/testthat/fixtures/make-test_sim_results.R | 2 tests/testthat/test-autoplot.seroincidence.by.R | 21 tests/testthat/test-cluster_robust_se.R |only tests/testthat/test-compare_seroincidence.R |only tests/testthat/test-est_seroincidence.R | 87 +++ tests/testthat/test-est_seroincidence_by.R | 113 ++++ tests/testthat/test-graph_seroresponse_model_1.R |only tests/testthat/test-load_noise_params.R |only tests/testthat/test-load_sr_params.R | 62 ++ tests/testthat/test-sim_pop_data.R | 13 tests/testthat/test-sim_pop_data_multi.R | 91 +++ 54 files changed, 1132 insertions(+), 342 deletions(-)
More information about serocalculator at CRAN
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Title: The Truncated Elliptical Family of Distributions
Description: It provides a function for random number generation from members of the truncated multivariate elliptical family of distributions, including truncated versions of the Normal, Student-t, Pearson type VII, Slash, Logistic, and related distributions. Additional distributions can be specified by supplying the density generating function. The package also computes first- and second-order moments, including the covariance matrix, for selected distributions.
References used for this package: Galarza, C. E., Matos, L. A., Castro, L. M., & Lachos, V. H. (2022). Moments of the doubly truncated selection elliptical distributions with emphasis on the unified multivariate skew-t distribution. Journal of Multivariate Analysis, 189, 104944 <doi:10.1016/j.jmva.2021.104944>; Ho, H. J., Lin, T. I., Chen, H. Y., & Wang, W. L. (2012). Some results on the truncated multivariate t distribution. Journal of Statistical Planning and Inference, 142(1), 25-40 <doi:10.1016/j.jspi.2011.06.006>; [...truncated...]
Author: Katherine A. L. Valeriano [aut, cre] ,
Larissa Avila Matos [ctb] ,
Christian Galarza Morales [ctb]
Maintainer: Katherine A. L. Valeriano <katandreina@gmail.com>
This is a re-admission after prior archival of version 1.3.0 dated 2024-02-07
Diff between relliptical versions 1.3.0 dated 2024-02-07 and 1.4.0 dated 2026-03-25
DESCRIPTION | 27 ++- MD5 | 30 ++-- NAMESPACE | 28 ++-- NEWS.md | 21 +-- R/Compute_Moments.R | 74 +++++----- R/Random_Numbers.R | 184 ++++++++++++++++----------- README.md | 245 +++++++++++++++++++----------------- build/partial.rdb |binary inst/REFERENCES.bib | 114 ++++++++-------- man/figures/README-example1-1.png |binary man/figures/README-example2.0-1.png |binary man/figures/README-example2.1-1.png |binary man/figures/README-example3-1.png |binary man/figures/README-example3.1-1.png |only man/figures/README-example4-1.png |only man/mvtelliptical.Rd | 62 +++++---- man/rtelliptical.Rd | 107 +++++++++------ 17 files changed, 497 insertions(+), 395 deletions(-)
Title: Bayesian Network Learning with the PCHC and Related Algorithms
Description: Bayesian network learning using the PCHC, FEDHC, MMHC and variants of these algorithms. PCHC stands for PC Hill-Climbing, a new hybrid algorithm that uses PC to construct the skeleton of the BN and then
applies the Hill-Climbing greedy search. More algorithms and variants have been added, such as MMHC, FEDHC, and the Tabu search variants, PCTABU, MMTABU and FEDTABU.
The relevant papers are:
a) Tsagris M. (2021). "A new scalable Bayesian network learning algorithm with applications to economics". Computational Economics, 57(1): 341-367. <doi:10.1007/s10614-020-10065-7>.
b) Tsagris M. (2022). "The FEDHC Bayesian Network Learning Algorithm". Mathematics 2022, 10(15): 2604. <doi:10.3390/math10152604>.
c) Sevinc V. and Tsagris M. (2024). "On the Hyperparameters of PCTABU and PCHC Bayesian Network Learning Algorithms". <doi:10.21203/rs.3.rs-5137132/v1>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between pchc versions 1.3 dated 2024-12-06 and 1.4 dated 2026-03-25
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NAMESPACE | 4 +++- R/rbn2.R | 6 +++--- R/rbn3.R | 2 +- man/pchc-package.Rd | 7 +++++-- 6 files changed, 23 insertions(+), 17 deletions(-)
Title: Bridging Simultaneous Confidence Corridors and PET Neuroimaging
Description: Tools for the structured processing of PET neuroimaging data
in preparation for the estimation of Simultaneous Confidence Corridors (SCCs)
for one-group, two-group, or single-patient vs group comparisons.
The package facilitates PET image loading, data restructuring, integration
into a Functional Data Analysis framework, contour extraction, identification
of significant results, and performance evaluation. It bridges established
packages (e.g., 'oro.nifti') with novel statistical methodologies (e.g.,
'ImageSCC') and enables reproducible analysis pipelines, including
comparison with Statistical Parametric Mapping ('SPM').
Author: Juan A. Arias Lopez [aut, cre, cph] ,
Virgilio Gomez Rubio [rev] ,
Pablo Aguiar Fernandez [ths] ,
Andrew Haddon Kemp [ths]
Maintainer: Juan A. Arias Lopez <iguanamarina@protonmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2025-03-27
Diff between neuroSCC versions 1.0.0 dated 2025-03-27 and 1.0.1 dated 2026-03-25
DESCRIPTION | 26 +++++++------ MD5 | 39 ++++++++++---------- NEWS.md | 9 ++++ R/internal-contours.R |only R/neuroContour.R | 72 +++++++++++-------------------------- README.md | 38 +++++++++++++++---- inst/doc/landing_vignette.R | 2 - inst/doc/landing_vignette.Rmd | 2 - inst/doc/landing_vignette.html | 57 ++++++++++++++--------------- inst/doc/one_vs_group.R | 2 - inst/doc/one_vs_group.Rmd | 2 - inst/doc/one_vs_group.html | 9 ++-- inst/doc/two_group_comparison.R | 2 - inst/doc/two_group_comparison.Rmd | 2 - inst/doc/two_group_comparison.html | 7 ++- man/figures/workflow.png |binary man/neuroContour.Rd | 39 +++++++++----------- man/neuroSCC-package.Rd | 2 - vignettes/landing_vignette.Rmd | 2 - vignettes/one_vs_group.Rmd | 2 - vignettes/two_group_comparison.Rmd | 2 - 21 files changed, 161 insertions(+), 155 deletions(-)
Title: Implement Descriptive Studies Using the Common Data Model
Description: An end-to-end framework that enables users to implement various descriptive studies for a given set of target and outcome cohorts for data mapped to the Observational Medical Outcomes Partnership Common Data Model.
Author: Jenna Reps [aut, cre],
Patrick Ryan [aut],
Chris Knoll [aut]
Maintainer: Jenna Reps <jreps@its.jnj.com>
Diff between Characterization versions 2.2.0 dated 2025-09-10 and 3.0.0 dated 2026-03-25
Characterization-2.2.0/Characterization/R/AggregateCovariates.R |only Characterization-2.2.0/Characterization/R/SaveLoad.R |only Characterization-2.2.0/Characterization/inst/sql/postgresql |only Characterization-2.2.0/Characterization/inst/sql/sql_server/CaseCohortsPart1.sql |only Characterization-2.2.0/Characterization/inst/sql/sql_server/CaseCohortsPart2.sql |only Characterization-2.2.0/Characterization/inst/sql/sql_server/migrations/Migration_1-v0_3_0_store_version.sql |only Characterization-2.2.0/Characterization/inst/sql/sql_server/migrations/Migration_2-v2_1_1_mean_exposure_time_type.sql |only Characterization-2.2.0/Characterization/inst/sql/sql_server/migrations/Migration_3-v2_2_0_count_as_bigint.sql |only Characterization-2.2.0/Characterization/inst/sql/sqlite |only Characterization-2.2.0/Characterization/man/createAggregateCovariateSettings.Rd |only Characterization-2.2.0/Characterization/tests/testthat/test-aggregateCovariate.R |only Characterization-2.2.0/Characterization/tests/testthat/testdata |only Characterization-3.0.0/Characterization/DESCRIPTION | 12 Characterization-3.0.0/Characterization/MD5 | 203 Characterization-3.0.0/Characterization/NAMESPACE | 48 Characterization-3.0.0/Characterization/R/CaseSeries.R |only Characterization-3.0.0/Characterization/R/Characterization.R | 44 Characterization-3.0.0/Characterization/R/CohortGeneration.R |only Characterization-3.0.0/Characterization/R/CombineCovariateSettings.R |only Characterization-3.0.0/Characterization/R/CustomCovariates.R | 1074 +-- Characterization-3.0.0/Characterization/R/Database.R | 776 +- Characterization-3.0.0/Characterization/R/DechallengeRechallenge.R | 1101 +-- Characterization-3.0.0/Characterization/R/Demographics.R |only Characterization-3.0.0/Characterization/R/ExportingCsvFiles.R |only Characterization-3.0.0/Characterization/R/HelperFunctions.R | 629 - Characterization-3.0.0/Characterization/R/Incremental.R | 439 - Characterization-3.0.0/Characterization/R/LookupCohortSettings.R |only Characterization-3.0.0/Characterization/R/RiskFactorAnalysis.R |only Characterization-3.0.0/Characterization/R/RunCharacterization.R | 1501 ++-- Characterization-3.0.0/Characterization/R/TargetAnalysis.R |only Characterization-3.0.0/Characterization/R/TimeToEvent.R | 676 - Characterization-3.0.0/Characterization/R/ViewShiny.R | 607 - Characterization-3.0.0/Characterization/build/vignette.rds |binary Characterization-3.0.0/Characterization/inst/doc/Specification.R | 1160 +-- Characterization-3.0.0/Characterization/inst/doc/Specification.Rmd | 1642 ++-- Characterization-3.0.0/Characterization/inst/doc/Specification.html | 3503 +++++----- Characterization-3.0.0/Characterization/inst/doc/UsingPackage.R | 407 - Characterization-3.0.0/Characterization/inst/doc/UsingPackage.Rmd | 688 + Characterization-3.0.0/Characterization/inst/doc/UsingPackage.html | 823 +- Characterization-3.0.0/Characterization/inst/settings/resultsDataModelSpecification.csv | 204 Characterization-3.0.0/Characterization/inst/shinyConfig.json | 64 Characterization-3.0.0/Characterization/inst/shinyConfigUpdate.json | 52 Characterization-3.0.0/Characterization/inst/sql/sql_server/CaseCohorts.sql |only Characterization-3.0.0/Characterization/inst/sql/sql_server/CaseSeriesBinaryExtraction.sql |only Characterization-3.0.0/Characterization/inst/sql/sql_server/CaseSeriesContinuousExtraction.sql |only Characterization-3.0.0/Characterization/inst/sql/sql_server/ConceptCountsDuring.sql | 510 - Characterization-3.0.0/Characterization/inst/sql/sql_server/CreateTargetCohortTable.sql |only Characterization-3.0.0/Characterization/inst/sql/sql_server/DechallengeRechallenge.sql | 342 Characterization-3.0.0/Characterization/inst/sql/sql_server/DomainConceptDuring.sql | 158 Characterization-3.0.0/Characterization/inst/sql/sql_server/DomainConceptGroupDuring.sql | 304 Characterization-3.0.0/Characterization/inst/sql/sql_server/DropCaseCovariate.sql | 72 Characterization-3.0.0/Characterization/inst/sql/sql_server/DropCaseSeriesTempTables.sql |only Characterization-3.0.0/Characterization/inst/sql/sql_server/DropDechallengeRechallenge.sql | 20 Characterization-3.0.0/Characterization/inst/sql/sql_server/DropRechallengeFailCaseSeries.sql | 22 Characterization-3.0.0/Characterization/inst/sql/sql_server/DropRiskFactorTempTables.sql |only Characterization-3.0.0/Characterization/inst/sql/sql_server/DropTargetCohortTable.sql |only Characterization-3.0.0/Characterization/inst/sql/sql_server/DropTargetCovariate.sql | 48 Characterization-3.0.0/Characterization/inst/sql/sql_server/DropTimeToEvent.sql | 76 Characterization-3.0.0/Characterization/inst/sql/sql_server/GetTimeToEvent.sql | 20 Characterization-3.0.0/Characterization/inst/sql/sql_server/IncludeDescendants.sql | 52 Characterization-3.0.0/Characterization/inst/sql/sql_server/NonCaseCohorts.sql |only Characterization-3.0.0/Characterization/inst/sql/sql_server/RechallengeFailCaseSeries.sql | 122 Characterization-3.0.0/Characterization/inst/sql/sql_server/ResultTables.sql | 428 - Characterization-3.0.0/Characterization/inst/sql/sql_server/RiskFactorBinaryExtraction.sql |only Characterization-3.0.0/Characterization/inst/sql/sql_server/RiskFactorContinuousExtraction.sql |only Characterization-3.0.0/Characterization/inst/sql/sql_server/TargetCohorts.sql | 149 Characterization-3.0.0/Characterization/inst/sql/sql_server/TargetCounts.sql |only Characterization-3.0.0/Characterization/inst/sql/sql_server/TimeToEvent.sql | 652 - Characterization-3.0.0/Characterization/inst/sql/sql_server/UpdateVersionNumber.sql | 10 Characterization-3.0.0/Characterization/inst/sql/sql_server/migrations/Migration_1-v3_0_0_store_version.sql |only Characterization-3.0.0/Characterization/man/Characterization-package.Rd | 60 Characterization-3.0.0/Characterization/man/cleanIncremental.Rd | 70 Characterization-3.0.0/Characterization/man/cleanNonIncremental.Rd | 60 Characterization-3.0.0/Characterization/man/computeDechallengeRechallengeAnalyses.Rd | 168 Characterization-3.0.0/Characterization/man/computeRechallengeFailCaseSeriesAnalyses.Rd | 175 Characterization-3.0.0/Characterization/man/computeTimeToEventAnalyses.Rd | 181 Characterization-3.0.0/Characterization/man/createCaseSeriesSettings.Rd |only Characterization-3.0.0/Characterization/man/createCharacterizationSettings.Rd | 102 Characterization-3.0.0/Characterization/man/createCharacterizationTables.Rd | 118 Characterization-3.0.0/Characterization/man/createDechallengeRechallengeSettings.Rd | 84 Characterization-3.0.0/Characterization/man/createDuringCovariateSettings.Rd | 222 Characterization-3.0.0/Characterization/man/createRiskFactorSettings.Rd |only Characterization-3.0.0/Characterization/man/createSqliteDatabase.Rd | 64 Characterization-3.0.0/Characterization/man/createTargetBaselineSettings.Rd |only Characterization-3.0.0/Characterization/man/createTimeToEventSettings.Rd | 68 Characterization-3.0.0/Characterization/man/exampleOmopConnectionDetails.Rd | 54 Characterization-3.0.0/Characterization/man/getDbDuringCovariateData.Rd | 197 Characterization-3.0.0/Characterization/man/insertResultsToDatabase.Rd | 174 Characterization-3.0.0/Characterization/man/loadCharacterizationSettings.Rd | 100 Characterization-3.0.0/Characterization/man/runCharacterizationAnalyses.Rd | 241 Characterization-3.0.0/Characterization/man/saveCharacterizationSettings.Rd | 90 Characterization-3.0.0/Characterization/man/viewCharacterization.Rd | 112 Characterization-3.0.0/Characterization/tests/testthat.R | 4 Characterization-3.0.0/Characterization/tests/testthat/setup.R | 16 Characterization-3.0.0/Characterization/tests/testthat/test-CaseSeries.R |only Characterization-3.0.0/Characterization/tests/testthat/test-CohortGeneration.R |only Characterization-3.0.0/Characterization/tests/testthat/test-Database.R | 124 Characterization-3.0.0/Characterization/tests/testthat/test-ExportingCsvFiles.R |only Characterization-3.0.0/Characterization/tests/testthat/test-Incremental.R | 688 - Characterization-3.0.0/Characterization/tests/testthat/test-RiskFactor.R |only Characterization-3.0.0/Characterization/tests/testthat/test-dbs.R | 576 - Characterization-3.0.0/Characterization/tests/testthat/test-dechallengeRechallenge.R | 757 +- Characterization-3.0.0/Characterization/tests/testthat/test-manualData.R | 1026 +- Characterization-3.0.0/Characterization/tests/testthat/test-runCharacterization.R | 969 +- Characterization-3.0.0/Characterization/tests/testthat/test-targetAnalysis.R |only Characterization-3.0.0/Characterization/tests/testthat/test-timeToEvent.R | 187 Characterization-3.0.0/Characterization/tests/testthat/test-viewShiny.R | 252 Characterization-3.0.0/Characterization/vignettes/Specification.Rmd | 1642 ++-- Characterization-3.0.0/Characterization/vignettes/UsingPackage.Rmd | 688 + 109 files changed, 14572 insertions(+), 13335 deletions(-)
More information about Characterization at CRAN
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More information about SpatialInference at CRAN
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Title: Communicate with 'Ollama' to Run Large Language Models Locally
Description: Wraps the 'Ollama' <https://ollama.com> API, which can be used to
communicate with generative large language models locally.
Author: Johannes B. Gruber [aut, cre] ,
Maximilian Weber [aut, ctb]
Maintainer: Johannes B. Gruber <JohannesB.Gruber@gmail.com>
Diff between rollama versions 0.2.2 dated 2025-04-25 and 0.3.0 dated 2026-03-25
rollama-0.2.2/rollama/inst/extdata/modelfile.txt |only rollama-0.2.2/rollama/man/figures/logo.svg |only rollama-0.3.0/rollama/DESCRIPTION | 18 rollama-0.3.0/rollama/MD5 | 62 +- rollama-0.3.0/rollama/NAMESPACE | 24 rollama-0.3.0/rollama/NEWS.md | 15 rollama-0.3.0/rollama/R/chat.r | 343 ++++++++---- rollama-0.3.0/rollama/R/embedding.r | 88 +-- rollama-0.3.0/rollama/R/lib.R | 247 ++++---- rollama-0.3.0/rollama/R/models.r | 268 ++++++--- rollama-0.3.0/rollama/R/progress.R |only rollama-0.3.0/rollama/R/structures.r |only rollama-0.3.0/rollama/R/utils.r | 94 ++- rollama-0.3.0/rollama/README.md | 85 ++ rollama-0.3.0/rollama/build/vignette.rds |binary rollama-0.3.0/rollama/inst/WORDLIST | 27 rollama-0.3.0/rollama/inst/doc/authentication.R |only rollama-0.3.0/rollama/inst/doc/authentication.Rmd |only rollama-0.3.0/rollama/inst/doc/authentication.html |only rollama-0.3.0/rollama/inst/doc/hf-gguf.Rmd | 2 rollama-0.3.0/rollama/inst/doc/structured_outputs.Rmd |only rollama-0.3.0/rollama/inst/doc/structured_outputs.html |only rollama-0.3.0/rollama/man/check_model_installed.Rd | 2 rollama-0.3.0/rollama/man/create_model.Rd | 50 + rollama-0.3.0/rollama/man/create_schema.Rd |only rollama-0.3.0/rollama/man/embed_text.Rd | 15 rollama-0.3.0/rollama/man/figures/logo-fullsize.svg |only rollama-0.3.0/rollama/man/list_running_models.Rd |only rollama-0.3.0/rollama/man/make_query.Rd | 2 rollama-0.3.0/rollama/man/pull_model.Rd | 49 + rollama-0.3.0/rollama/man/query.Rd | 110 +++ rollama-0.3.0/rollama/tests/testthat/test-cache.R |only rollama-0.3.0/rollama/tests/testthat/test-chat.R | 100 ++- rollama-0.3.0/rollama/tests/testthat/test-embedding.R | 33 + rollama-0.3.0/rollama/tests/testthat/test-models.R | 61 +- rollama-0.3.0/rollama/vignettes/authentication.Rmd |only rollama-0.3.0/rollama/vignettes/hf-gguf.Rmd | 2 rollama-0.3.0/rollama/vignettes/hf-gguf.Rmd.orig | 2 rollama-0.3.0/rollama/vignettes/structured_outputs.Rmd |only rollama-0.3.0/rollama/vignettes/structured_outputs.Rmd.orig |only 40 files changed, 1218 insertions(+), 481 deletions(-)
More information about reproresearchR at CRAN
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Title: Rank Distance Correlation Coefficient
Description: The rank distance correlation <doi:10.1080/01621459.2020.1782223> is computed. Included also is a function to perform permutation based testing.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between rdcor versions 1.0 dated 2025-12-08 and 1.1 dated 2026-03-25
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- NAMESPACE | 2 +- R/rdcor.test.R | 4 ++-- man/rdcor-package.Rd | 4 ++-- 5 files changed, 15 insertions(+), 14 deletions(-)
Title: Group Iterative Multiple Model Estimation
Description: Data-driven approach for arriving at person-specific time series models. The method first identifies which relations replicate across the majority of individuals to detect signal from noise. These group-level relations are then used as a foundation for starting the search for person-specific (or individual-level) relations. See Gates & Molenaar (2012) <doi:10.1016/j.neuroimage.2012.06.026>.
Author: Stephanie Lane [aut, trl],
Kathleen M Gates [aut, cre, ccp],
Zachary Fisher [aut],
Cara Arizmendi [aut],
Peter Molenaar [aut, ccp],
Edgar Merkle [ctb],
Michael Hallquist [ctb],
Hallie Pike [ctb],
Teague Henry [ctb],
Kelly Duffy [ctb],
Lan Luo [ctb],
[...truncated...]
Maintainer: Kathleen M Gates <gateskm@email.unc.edu>
Diff between gimme versions 0.9.3 dated 2025-11-13 and 0.9.4 dated 2026-03-25
DESCRIPTION | 8 ++--- MD5 | 40 +++++++++++++------------- R/aggSEM.R | 12 +++++++ R/gimme.R | 23 +++++++++++---- R/highest.mi.R | 51 +++++++++++++++++++-------------- R/indSEM.R | 12 +++++++ R/indiv.search.R | 5 ++- R/search.paths.ind.R | 5 +++ R/setup.R | 4 +- README.md | 5 ++- inst/doc/gimme_vignette.R | 1 inst/doc/gimme_vignette.Rmd | 2 + inst/doc/gimme_vignette.html | 22 +++++++++----- man/aggSEM.Rd | 7 ++++ man/gimmeSEM.Rd | 13 +++++++- man/highest.mi.Rd | 7 ++++ man/indSEM.Rd | 7 ++++ man/indiv.search.Rd | 3 + man/search.paths.ind.Rd | 3 + tests/testthat/test-gimme.R | 65 +++++++++++++++++++++++++++++++++++++++++++ vignettes/gimme_vignette.Rmd | 2 + 21 files changed, 234 insertions(+), 63 deletions(-)
Title: Variational Autoencoders for Heterogeneous Tabular Data
Description: Build and train a variational autoencoder (VAE) for mixed-type
tabular data (continuous, binary, categorical).
Models are implemented using 'TensorFlow' and 'Keras' via the 'reticulate'
interface, enabling reproducible VAE training for heterogeneous tabular
datasets.
Author: Sarah Milligan [aut, cre]
Maintainer: Sarah Milligan <slm1999@bu.edu>
Diff between autotab versions 0.1.3 dated 2026-02-08 and 1.0 dated 2026-03-25
DESCRIPTION | 6 ++-- MD5 | 10 +++---- R/loss.R | 82 ++++++++++++++++++++++++++++++++++++++++++++++------------- R/model.R | 39 +++++++++++++--------------- R/training.R | 5 ++- README.md | 2 - 6 files changed, 95 insertions(+), 49 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Bryce Mecum [aut],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb], [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 23.0.1.1 dated 2026-02-24 and 23.0.1.2 dated 2026-03-25
arrow-23.0.1.1/arrow/tools/cpp/CMakeLists.txt-e |only arrow-23.0.1.2/arrow/DESCRIPTION | 6 ++-- arrow-23.0.1.2/arrow/MD5 | 15 +++++------ arrow-23.0.1.2/arrow/NEWS.md | 10 ++++++- arrow-23.0.1.2/arrow/man/acero.Rd | 2 - arrow-23.0.1.2/arrow/man/read_json_arrow.Rd | 2 - arrow-23.0.1.2/arrow/man/schema.Rd | 2 - arrow-23.0.1.2/arrow/src/arrow_cpp11.h | 21 ++++++---------- arrow-23.0.1.2/arrow/tests/testthat/test-dplyr-mutate.R | 3 ++ 9 files changed, 34 insertions(+), 27 deletions(-)
Title: Assessing Package Risk Metrics
Description: A reliable and validated tool that captures detailed risk metrics
such as R 'CMD' check, test coverage, traceability matrix, documentation, dependencies,
reverse dependencies, suggested dependency analysis, repository data,
and enhanced reporting for R packages that are local or stored
on remote repositories such as GitHub, CRAN, and Bioconductor.
Author: Edward Gillian [cre, aut] ,
Hugo Bottois [aut] ,
Paulin Charliquart [aut],
Andre Couturier [aut],
Sanofi [cph, fnd]
Maintainer: Edward Gillian <edward.gillian-ext@sanofi.com>
Diff between risk.assessr versions 3.0.1 dated 2025-12-01 and 3.1.0 dated 2026-03-25
risk.assessr-3.0.1/risk.assessr/R/sanofi.risk.assessr-package.R |only risk.assessr-3.0.1/risk.assessr/man/find_reverse_dependencies.Rd |only risk.assessr-3.0.1/risk.assessr/man/get_pkg_license.Rd |only risk.assessr-3.0.1/risk.assessr/man/get_reverse_dependencies.Rd |only risk.assessr-3.1.0/risk.assessr/DESCRIPTION | 19 risk.assessr-3.1.0/risk.assessr/MD5 | 222 + risk.assessr-3.1.0/risk.assessr/NAMESPACE | 17 risk.assessr-3.1.0/risk.assessr/NEWS.md | 13 risk.assessr-3.1.0/risk.assessr/R/assess_pkg.R | 71 risk.assessr-3.1.0/risk.assessr/R/assess_pkg_r_package.R | 94 risk.assessr-3.1.0/risk.assessr/R/core_metrics.R | 1 risk.assessr-3.1.0/risk.assessr/R/create_empty_results.R | 2 risk.assessr-3.1.0/risk.assessr/R/create_traceability_matrix.R | 13 risk.assessr-3.1.0/risk.assessr/R/dependencies.R | 28 risk.assessr-3.1.0/risk.assessr/R/dependency_tree.R | 275 +- risk.assessr-3.1.0/risk.assessr/R/documentation_metrics.R | 617 +++- risk.assessr-3.1.0/risk.assessr/R/generate_html_report.R | 286 +- risk.assessr-3.1.0/risk.assessr/R/generate_traceability_matrix.R | 108 risk.assessr-3.1.0/risk.assessr/R/get_exports.R | 47 risk.assessr-3.1.0/risk.assessr/R/get_func_descriptions.R | 40 risk.assessr-3.1.0/risk.assessr/R/get_github_data.R | 3 risk.assessr-3.1.0/risk.assessr/R/get_package_host_info.R | 114 risk.assessr-3.1.0/risk.assessr/R/get_risk_analysis.R | 22 risk.assessr-3.1.0/risk.assessr/R/get_tests_long_sum_stf.R |only risk.assessr-3.1.0/risk.assessr/R/get_tests_skip_stf.R |only risk.assessr-3.1.0/risk.assessr/R/globals.R | 8 risk.assessr-3.1.0/risk.assessr/R/map_tests_stf.R |only risk.assessr-3.1.0/risk.assessr/R/risk.assessr-package.R |only risk.assessr-3.1.0/risk.assessr/R/run_covr_modes.R |only risk.assessr-3.1.0/risk.assessr/R/run_covr_skip_nstf.R |only risk.assessr-3.1.0/risk.assessr/R/run_covr_skip_stf.R |only risk.assessr-3.1.0/risk.assessr/R/unittest_methods.R | 69 risk.assessr-3.1.0/risk.assessr/R/write_summary_report.R |only risk.assessr-3.1.0/risk.assessr/inst/config/risk-definition.json | 10 risk.assessr-3.1.0/risk.assessr/inst/doc/Popularity_metric.R | 7 risk.assessr-3.1.0/risk.assessr/inst/doc/Popularity_metric.Rmd | 3 risk.assessr-3.1.0/risk.assessr/inst/doc/Popularity_metric.html | 16 risk.assessr-3.1.0/risk.assessr/inst/doc/Pubmed_data.Rmd | 4 risk.assessr-3.1.0/risk.assessr/inst/doc/Pubmed_data.html | 1 risk.assessr-3.1.0/risk.assessr/inst/doc/define_custom_risk_rules.R | 80 risk.assessr-3.1.0/risk.assessr/inst/doc/define_custom_risk_rules.Rmd | 10 risk.assessr-3.1.0/risk.assessr/inst/doc/define_custom_risk_rules.html | 169 - risk.assessr-3.1.0/risk.assessr/inst/doc/dependency_tree.R | 23 risk.assessr-3.1.0/risk.assessr/inst/doc/dependency_tree.Rmd | 45 risk.assessr-3.1.0/risk.assessr/inst/doc/dependency_tree.html | 409 ++- risk.assessr-3.1.0/risk.assessr/inst/doc/get-package-host.R | 3 risk.assessr-3.1.0/risk.assessr/inst/doc/get-package-host.Rmd | 14 risk.assessr-3.1.0/risk.assessr/inst/doc/get-package-host.html | 6 risk.assessr-3.1.0/risk.assessr/inst/doc/risk.assessr_metric.Rmd | 7 risk.assessr-3.1.0/risk.assessr/inst/doc/risk.assessr_metric.html | 4 risk.assessr-3.1.0/risk.assessr/inst/examples/assessr.R | 2 risk.assessr-3.1.0/risk.assessr/inst/examples/risk_report_ggplot2_3.5.2.html | 82 risk.assessr-3.1.0/risk.assessr/inst/report_templates/risk_report_template.Rmd | 289 ++ risk.assessr-3.1.0/risk.assessr/inst/report_templates/styles.css |only risk.assessr-3.1.0/risk.assessr/inst/report_templates/summary.Rmd |only risk.assessr-3.1.0/risk.assessr/inst/test-data/MASS_7.3-65.tar.gz |only risk.assessr-3.1.0/risk.assessr/inst/test-data/package_test_case.csv | 2 risk.assessr-3.1.0/risk.assessr/inst/test-data/riskdata_results_slim.csv | 8 risk.assessr-3.1.0/risk.assessr/inst/test-data/test.package.0014_0.1.0.tar.gz |only risk.assessr-3.1.0/risk.assessr/inst/tools |only risk.assessr-3.1.0/risk.assessr/man/as_iso_date.Rd | 7 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risk.assessr-3.1.0/risk.assessr/tests/testthat/test-generate_html_report.R | 459 +++ risk.assessr-3.1.0/risk.assessr/tests/testthat/test-generate_traceability_matrix.R | 326 -- risk.assessr-3.1.0/risk.assessr/tests/testthat/test-get_exports.R | 950 +++++++ risk.assessr-3.1.0/risk.assessr/tests/testthat/test-get_tests_long_sum_stf.R |only risk.assessr-3.1.0/risk.assessr/tests/testthat/test-get_tests_skip_stf.R |only risk.assessr-3.1.0/risk.assessr/tests/testthat/test-install_package_local.R | 2 risk.assessr-3.1.0/risk.assessr/tests/testthat/test-map_tests_stf.R |only risk.assessr-3.1.0/risk.assessr/tests/testthat/test-reverse_dependencies.R | 39 risk.assessr-3.1.0/risk.assessr/tests/testthat/test-risk_assess_pkg.R | 19 risk.assessr-3.1.0/risk.assessr/tests/testthat/test-run_coverage.R | 309 -- risk.assessr-3.1.0/risk.assessr/tests/testthat/test-run_covr.R | 99 risk.assessr-3.1.0/risk.assessr/tests/testthat/test-run_covr_modes.R |only 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Title: Observational Health Data Sciences and Informatics Report
Generator
Description: Extract results into R from the Observational Health Data Sciences and Informatics result database (see <https://ohdsi.github.io/Strategus/results-schema/index.html>) and generate reports/presentations via 'quarto' that summarize results in HTML format. Learn more about 'OhdsiReportGenerator' at <https://ohdsi.github.io/OhdsiReportGenerator/>.
Author: Jenna Reps [aut, cre],
Anthony Sena [aut]
Maintainer: Jenna Reps <jreps@its.jnj.com>
Diff between OhdsiReportGenerator versions 2.0.2 dated 2025-12-17 and 2.1.0 dated 2026-03-25
OhdsiReportGenerator-2.0.2/OhdsiReportGenerator/man/getCaseBinaryFeatures.Rd |only OhdsiReportGenerator-2.0.2/OhdsiReportGenerator/man/getCaseContinuousFeatures.Rd |only OhdsiReportGenerator-2.0.2/OhdsiReportGenerator/man/getCaseTargetBinaryFeatures.Rd |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/DESCRIPTION | 17 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/MD5 | 254 - OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/NAMESPACE | 11 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/R/CharacterizationPlots.R | 73 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/R/CharacterzationQueries.R | 1979 +++------- OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/R/CohortQueries.R | 658 ++- OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/R/EstimationPlots.R | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/R/EstimationQueries.R | 497 -- OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/R/Generate.R | 11 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/R/Helpers.R | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/R/PredictionQueries.R | 86 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/R/TargetOutcomeInfo.R | 36 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/R/TreatmentPatternsQueries.R |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/doc/ExampleCode.html | 668 +-- OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/exampledata/results.sqlite.zip |binary OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/sql |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/templates/full-report/causal_inference.qmd | 35 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/templates/full-report/characterization.qmd | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/templates/full-report/characterization/demographics.qmd | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/templates/full-report/characterization/index_breakdown.qmd | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/templates/full-report/characterization/risk_factors.qmd | 18 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/templates/full-report/definitions.qmd | 10 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/templates/full-report/main_template.qmd | 220 - OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/templates/presentation/assure_presentation.qmd | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/templates/presentation/characterization.qmd | 27 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/inst/templates/summary-templates/prediction-questions/question2.qmd | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/dot-getCmVersion.Rd |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/generateFullReport.Rd | 7 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getAnalysisCohorts.Rd |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getBinaryCaseSeries.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getBinaryRiskFactors.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCMEstimation.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCaseCounts.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCaseTargetCounts.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCharacterizationCohortBinary.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCharacterizationCohortContinuous.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCharacterizationDemographics.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCharacterizationOutcomes.Rd | 8 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCharacterizationTargets.Rd | 11 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCmDiagnosticsData.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCmMetaEstimation.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCmNegativeControlEstimates.Rd | 4 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCmOutcomes.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCmPropensityModel.Rd | 4 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCmTable.Rd | 4 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCmTargets.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCohortAttrition.Rd |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCohortCounts.Rd | 9 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCohortDefinitions.Rd | 7 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCohortInclusionRules.Rd | 7 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCohortInclusionStats.Rd | 7 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCohortInclusionSummary.Rd | 7 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCohortMeta.Rd | 7 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCohortSubsetAttrition.Rd |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getCohortSubsetDefinitions.Rd | 7 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getContinuousCaseSeries.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getContinuousRiskFactors.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getDechallengeRechallenge.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getDechallengeRechallengeFails.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getEventDuration.Rd |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getIncidenceOutcomes.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getIncidenceRates.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getIncidenceTargets.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getSccsDiagnosticsData.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getSccsEstimation.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getSccsMetaEstimation.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getSccsModel.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getSccsNegativeControlEstimates.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getSccsOutcomes.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getSccsTable.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getSccsTargets.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getSccsTimeToEvent.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getSubsetText.Rd |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getTargetBinaryFeatures.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getTargetContinuousFeatures.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getTimeToEvent.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/getTreatmentPathways.Rd |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/plotAgeDistributions.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/plotCmEstimates.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/plotSccsEstimates.Rd | 1 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/plotSexDistributions.Rd | 3 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/processCohortDefinitionsForQuarto.Rd |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/processCohorts.Rd | 7 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/man/restrictCohortDefinitionsForQuarto.Rd |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat.R | 10 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/Rplots.pdf |only OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-Backwards.R | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-CharacterizationPlots.R | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-CharacterizationQueries.R | 108 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-CohortQueries.R | 333 + OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-Database.R | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-EstimationPlots.R | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-EstimationQueries.R | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-Generate.R | 6 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-Helpers.R | 4 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-PredictionQueries.R | 8 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-PredictionReport.R | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-TargetOutcomeInfo.R | 2 OhdsiReportGenerator-2.1.0/OhdsiReportGenerator/tests/testthat/test-TreatmentPatternsQueries.R |only 102 files changed, 2633 insertions(+), 2632 deletions(-)
More information about OhdsiReportGenerator at CRAN
Permanent link
Title: Analysis of Event Data with Two Time Scales
Description: Analyse time to event data with two time scales by estimating a smooth hazard that varies over two time scales. If covariates are available, estimate a proportional hazards model with such a two-dimensional baseline hazard.
Functions are provided to prepare the raw data for estimation, to fit the model and to plot the two-dimensional smooth hazard.
Extension to a competing risks model are implemented. For details about the method please refer to Carollo et al. (2025) <doi:10.1002/sim.10297>.
Author: Angela Carollo [aut, cre, cph] ,
Paul H.C. Eilers [aut],
Jutta Gampe [aut]
Maintainer: Angela Carollo <carollo@demogr.mpg.de>
Diff between TwoTimeScales versions 1.0.0 dated 2024-12-23 and 1.2.0 dated 2026-03-25
DESCRIPTION | 21 +- MD5 | 190 ++++++++++-------- NAMESPACE | 15 + NEWS.md | 58 +++++ R/GLAM_1d_covariates.R | 60 +++-- R/GLAM_2d_covariates.R | 6 R/GLAM_2d_no_covariates.R | 2 R/array_functions.R | 1 R/check_inputs.R | 2 R/competing_risks_methods.R | 57 ++--- R/covariates_plot.R | 135 ++++++------ R/data.R | 8 R/exposures_events_2d.R | 24 +- R/exposures_events_Lexis.R | 4 R/fit1ts.R | 94 +++++--- R/fit1tsmodel_ucminf.R | 57 +++-- R/fit2ts.R | 119 +++++++---- R/fit2tsmodel_ucminf.R | 13 - R/fitpgam.R |only R/fitvcm.R |only R/getAIC_BIC_LMM.R | 1 R/get_aic_fit_1d.R | 2 R/get_aic_fit_2d.R | 2 R/get_bic_fit_1d.R | 2 R/get_bic_fit_2d.R | 2 R/get_hazard_1d.R | 7 R/get_hazard_1d_LMM.R | 5 R/get_hazard_2d.R | 387 ++++++++++++++++++++++--------------- R/get_hr.R | 4 R/grid_search_1d.R | 8 R/grid_search_2d.R | 6 R/haz2ts_methods.R | 23 ++ R/haz2ts_summary.R | 174 ++++++++++++++++ R/imageplot_2ts.R | 5 R/iwls_1d.R | 2 R/make_grid.R |only R/pgam_functions.R |only R/plot.haz1ts.R | 138 ++++++------- R/plot.haz1tsLMM.R | 10 R/plot.haz2ts.R | 156 ++++++++------ R/plot.haz2tsLMM.R | 18 - R/plot.haz2tsPGAM.R |only R/plot.haz2tsVCM.R |only R/plot_slices.R | 8 R/predict_cif2ts_pointwise.R |only R/predict_comprisks2ts.R |only R/predict_haz2ts.R |only R/predict_haz2ts_pointwise.R |only R/prepare_data.R | 19 + R/prepare_data_LMMsolver.R | 2 R/print.data2ts.R | 3 R/select_model2ts.R |only R/utot.R | 1 build/partial.rdb |only build/vignette.rds |binary inst/WORDLIST |only inst/doc/TwoTimeScales.R | 120 +++++------ inst/doc/onetime.R | 394 ++++++++++++++++++------------------- inst/doc/twotimes.R | 210 ++++++++++---------- inst/doc/visualization.R | 418 ++++++++++++++++++++-------------------- man/GLAM_1d_covariates.Rd | 25 +- man/GLAM_2d_covariates.Rd | 3 man/GLAM_2d_no_covariates.Rd | 1 man/covariates_plot.Rd | 47 ++-- man/cumhaz2ts.Rd | 6 man/exposures_events_2d.Rd | 24 +- man/exposures_events_Lexis.Rd | 4 man/fit1ts.Rd | 52 ++-- man/fit1tsmodel_ucminf.Rd | 5 man/fit2ts.Rd | 67 ++++-- man/fit2tsmodel_ucminf.Rd | 3 man/fitpgam.Rd |only man/fitpgammodel_ucminf.Rd |only man/fitvcm.Rd |only man/getAIC_BIC_LMM.Rd | 1 man/get_aic_fit_1d.Rd | 1 man/get_aic_fit_2d.Rd | 1 man/get_aic_fit_pgam.Rd |only man/get_bic_fit_1d.Rd | 1 man/get_bic_fit_2d.Rd | 1 man/get_bic_fit_pgam.Rd |only man/get_hazard_1d.Rd | 2 man/get_hazard_1d_LMM.Rd | 5 man/get_hazard_2d.Rd | 51 +++- man/get_hr.Rd | 4 man/grid_search_1d.Rd | 5 man/grid_search_2d.Rd | 5 man/grid_search_pgam.Rd |only man/haz2tsPGAM_summary.Rd |only man/haz2tsVCM_summary.Rd |only man/haz2ts_summary.Rd | 4 man/imageplot_2ts.Rd | 2 man/iwls_1d.Rd | 1 man/make_grid.Rd |only man/plot.haz1ts.Rd | 14 - man/plot.haz1tsLMM.Rd | 2 man/plot.haz2ts.Rd | 54 +++-- man/plot.haz2tsPGAM.Rd |only man/plot.haz2tsVCM.Rd |only man/plot_slices.Rd | 3 man/predict_cif2ts_pointwise.Rd |only man/predict_comprisks2ts.Rd |only man/predict_haz2ts.Rd |only man/predict_haz2ts_pointwise.Rd |only man/prepare_data.Rd | 17 - man/reccolon2ts.Rd | 8 man/select_model2ts.Rd |only man/surv2ts.Rd | 13 - tests |only 109 files changed, 2007 insertions(+), 1418 deletions(-)
Title: Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 3.5.1 dated 2026-02-12 and 3.6.0 dated 2026-03-25
DESCRIPTION | 9 +++++---- MD5 | 15 +++++++++------ NAMESPACE | 13 ++++++++++++- R/generic.predict.rfsrc.R | 2 +- R/impute.learn.rfsrc.R |only R/rfsrc.R | 4 ++-- R/utilities_impute.learn.R |only inst/NEWS | 11 +++++++++-- man/impute.learn.rfsrc.Rd |only man/impute.rfsrc.Rd | 8 +++----- 10 files changed, 41 insertions(+), 21 deletions(-)
More information about randomForestSRC at CRAN
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Title: Fertility Models
Description: Four fertility models are fitted using non-linear least squares. These are the Hadwiger, the Gamma, the Model1 and Model2, following the terminology of the following paper: Peristera P. and Kostaki A. (2007). "Modeling fertility in modern populations". Demographic Research, 16(6): 141--194. <doi:10.4054/DemRes.2007.16.6>. Model based averaging is also supported.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between fertilmodel versions 1.4 dated 2024-11-29 and 1.5 dated 2026-03-25
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 2 +- R/comb.R | 30 +++++++++++++++++++++++------- man/fertilmodel-package.Rd | 4 ++-- 5 files changed, 35 insertions(+), 19 deletions(-)
Title: Data on Base and Recommended Packages for Current and Previous
Versions of R
Description: Provides a dataset of functions in all base and recommended packages of R versions 0.50 onwards.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between rcheology versions 4.5.2.0 dated 2025-11-16 and 4.5.3.0 dated 2026-03-25
DESCRIPTION | 6 +-- MD5 | 14 +++---- NEWS.md | 5 ++ README.md | 55 ++++++++++++++++++------------- data/Rversions.rda |binary data/rcheology.rda |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary 8 files changed, 47 insertions(+), 33 deletions(-)
Title: Assess Study Cohorts Using a Common Data Model
Description: Phenotype study cohorts in data mapped to the
Observational Medical Outcomes Partnership Common Data Model. Diagnostics
are run at the database, code list, cohort, and population level to assess
whether study cohorts are ready for research.
Author: Edward Burn [aut, cre] ,
Marti Catala [aut] ,
Xihang Chen [aut] ,
Marta Alcalde-Herraiz [aut] ,
Nuria Mercade-Besora [aut] ,
Albert Prats-Uribe [aut]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between PhenotypeR versions 0.3.3 dated 2026-02-23 and 0.3.4 dated 2026-03-25
DESCRIPTION | 21 +-- MD5 | 59 +++++----- R/cohortDiagnostics.R | 6 - R/databaseDiagnostics.R | 13 ++ R/documentationHelper.R | 12 ++ R/drugDiagnostics.R | 38 ++++-- R/phenotypeDiagnostics.R | 7 - R/populationDiagnostics.R | 2 R/shinyDiagnostics.R | 2 inst/doc/CodelistDiagnostics.html | 5 inst/doc/CohortDiagnostics.html | 5 inst/doc/DatabaseDiagnostics.html | 5 inst/doc/PhenotypeDiagnostics.html | 5 inst/doc/PhenotypeExpectations.html | 5 inst/doc/PopulationDiagnostics.R | 3 inst/doc/PopulationDiagnostics.Rmd | 3 inst/doc/PopulationDiagnostics.html | 8 - inst/doc/ShinyDiagnostics.html | 5 inst/shiny/global.R | 71 ++++++++---- inst/shiny/scripts/functions.R | 148 +++++++++++++++++++++++++ inst/shiny/scripts/preprocess.R | 12 +- inst/shiny/server.R | 169 ++++++++++++++++------------- man/clinicalTableSample.Rd |only man/databaseDiagnostics.Rd | 7 + man/phenotypeDiagnostics.Rd | 8 + man/populationDiagnostics.Rd | 2 man/shinyDiagnostics.Rd | 2 tests/testthat/test-databaseDiagnostics.R | 21 +++ tests/testthat/test-phenotypeDiagnostics.R | 11 + tests/testthat/test-shinyDiagnostics.R | 4 vignettes/PopulationDiagnostics.Rmd | 3 31 files changed, 468 insertions(+), 194 deletions(-)
Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating
grouped date classes.
Author: Tim Taylor [aut, cre]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between grates versions 1.7.2 dated 2026-02-27 and 1.8.0 dated 2026-03-25
DESCRIPTION | 6 +++--- MD5 | 36 +++++++++++++++++++----------------- NAMESPACE | 12 ++++++++++++ NEWS.md | 20 ++++++++++++++++++++ R/get_interval_duration.R |only R/int_period-class.R | 8 ++++++++ R/int_period-scale.R | 10 +++++----- R/utils.R | 2 +- build/vignette.rds |binary inst/doc/grates.html | 4 ++-- man/get_interval_duration.Rd |only tests/testthat/test-epiweek.R | 11 +++++++++++ tests/testthat/test-int_period.R | 10 ++++++++++ tests/testthat/test-isoweek.R | 9 +++++++++ tests/testthat/test-month.R | 8 ++++++++ tests/testthat/test-period.R | 9 +++++++++ tests/testthat/test-year.R | 7 +++++++ tests/testthat/test-yearmonth.R | 7 +++++++ tests/testthat/test-yearquarter.R | 7 +++++++ tests/testthat/test-yearweek.R | 9 +++++++++ 20 files changed, 147 insertions(+), 28 deletions(-)
Title: Bayesian Super Imposition by Translation and Rotation Growth
Curve Analysis
Description: The Super Imposition by Translation and Rotation (SITAR) model
is a shape-invariant nonlinear mixed effect model that fits a natural cubic
spline mean curve to the growth data and aligns individual-specific growth
curves to the underlying mean curve via a set of random effects (see Cole,
2010 <doi:10.1093/ije/dyq115> for details). The non-Bayesian version of the
SITAR model can be fit by using the already available R package 'sitar'. Unlike
the 'sitar' package which allows modelling of a single outcome only, the 'bsitar'
package offers great flexibility in fitting models of varying complexities,
including joint modelling of multiple outcomes such as height and weight
(multivariate model). Additionally, the 'bsitar' package allows for the simultaneous
analysis of an outcome separately for subgroups defined by a factor variable such
as gender. This is achieved by fitting separate models for each subgroup
(for example males and females for gender variable). An advantage of this appr [...truncated...]
Author: Satpal Sandhu [aut, cre, cph]
Maintainer: Satpal Sandhu <satpal.sandhu@bristol.ac.uk>
Diff between bsitar versions 0.3.2 dated 2025-02-07 and 0.3.3 dated 2026-03-25
bsitar-0.3.2/bsitar/R/growthparameters_comparison.R |only bsitar-0.3.2/bsitar/R/marginal_comparison.R |only bsitar-0.3.2/bsitar/R/marginal_draws.R |only bsitar-0.3.2/bsitar/R/utils-helper-44.R |only bsitar-0.3.2/bsitar/R/utils-helper-55.R |only bsitar-0.3.2/bsitar/R/utils-helper-555.R |only bsitar-0.3.2/bsitar/R/utils-pipe.R |only bsitar-0.3.2/bsitar/inst/stanhelper |only bsitar-0.3.2/bsitar/man/add_model_criterion.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/expose_model_functions.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/fitted_draws.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/growthparameters.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/growthparameters_comparison.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/loo_validation.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/marginal_comparison.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/marginal_draws.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/optimize_model.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/plot_conditional_effects.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/plot_curves.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/plot_ppc.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/predict_draws.bgmfit.Rd |only bsitar-0.3.2/bsitar/man/update_model.bgmfit.Rd |only bsitar-0.3.2/bsitar/tests/testthat/test-bsitar.R |only bsitar-0.3.3/bsitar/DESCRIPTION | 45 bsitar-0.3.3/bsitar/MD5 | 180 bsitar-0.3.3/bsitar/NAMESPACE | 36 bsitar-0.3.3/bsitar/NEWS.md | 362 bsitar-0.3.3/bsitar/R/add_model_criterion.R | 432 bsitar-0.3.3/bsitar/R/bsitar.R | 9424 ++++++-- bsitar-0.3.3/bsitar/R/check_and_get_object.R | 4 bsitar-0.3.3/bsitar/R/expose_model_functions.R | 437 bsitar-0.3.3/bsitar/R/fitted_draws.R | 757 bsitar-0.3.3/bsitar/R/get_comparisons.R |only bsitar-0.3.3/bsitar/R/get_growthparameters.R |only bsitar-0.3.3/bsitar/R/get_predictions.R |only bsitar-0.3.3/bsitar/R/growthparameters.R | 999 bsitar-0.3.3/bsitar/R/hypothesis_test.R |only bsitar-0.3.3/bsitar/R/loo_validation.R | 80 bsitar-0.3.3/bsitar/R/modelbased_growthparameters.R |only bsitar-0.3.3/bsitar/R/optimize_model.R | 425 bsitar-0.3.3/bsitar/R/plot_conditional_effects.R | 542 bsitar-0.3.3/bsitar/R/plot_curves.R | 1623 - bsitar-0.3.3/bsitar/R/plot_ppc.R | 95 bsitar-0.3.3/bsitar/R/predict_draws.R | 731 bsitar-0.3.3/bsitar/R/update_model.R | 88 bsitar-0.3.3/bsitar/R/utils-helper-1.R | 5907 ++++- bsitar-0.3.3/bsitar/R/utils-helper-10.R | 8142 ++++++- bsitar-0.3.3/bsitar/R/utils-helper-11.R |only bsitar-0.3.3/bsitar/R/utils-helper-12.R |only bsitar-0.3.3/bsitar/R/utils-helper-13.R |only bsitar-0.3.3/bsitar/R/utils-helper-14.R |only bsitar-0.3.3/bsitar/R/utils-helper-15.R |only bsitar-0.3.3/bsitar/R/utils-helper-16.R |only bsitar-0.3.3/bsitar/R/utils-helper-17.R |only bsitar-0.3.3/bsitar/R/utils-helper-18.R |only bsitar-0.3.3/bsitar/R/utils-helper-19.R |only bsitar-0.3.3/bsitar/R/utils-helper-2.R | 6611 ++++- bsitar-0.3.3/bsitar/R/utils-helper-20.R |only bsitar-0.3.3/bsitar/R/utils-helper-21.R |only bsitar-0.3.3/bsitar/R/utils-helper-22.R |only bsitar-0.3.3/bsitar/R/utils-helper-23.R |only bsitar-0.3.3/bsitar/R/utils-helper-24.R |only bsitar-0.3.3/bsitar/R/utils-helper-25.R |only bsitar-0.3.3/bsitar/R/utils-helper-26.R |only bsitar-0.3.3/bsitar/R/utils-helper-27.R |only bsitar-0.3.3/bsitar/R/utils-helper-28.R |only bsitar-0.3.3/bsitar/R/utils-helper-3.R | 393 bsitar-0.3.3/bsitar/R/utils-helper-4.R | 708 bsitar-0.3.3/bsitar/R/utils-helper-5.R | 5121 ++-- bsitar-0.3.3/bsitar/R/utils-helper-6.R | 4717 ---- bsitar-0.3.3/bsitar/R/utils-helper-7.R |11405 +++------- bsitar-0.3.3/bsitar/R/utils-helper-8.R | 2517 -- bsitar-0.3.3/bsitar/R/utils-helper-9.R | 4294 +++ bsitar-0.3.3/bsitar/R/zzz.R | 65 bsitar-0.3.3/bsitar/README.md | 13 bsitar-0.3.3/bsitar/build/partial.rdb |binary bsitar-0.3.3/bsitar/build/vignette.rds |binary bsitar-0.3.3/bsitar/data/berkeley_exdata.rda |binary bsitar-0.3.3/bsitar/data/berkeley_exfit.rda |binary bsitar-0.3.3/bsitar/inst/CITATION | 20 bsitar-0.3.3/bsitar/inst/REFERENCES.bib | 37 bsitar-0.3.3/bsitar/inst/WORDLIST | 27 bsitar-0.3.3/bsitar/inst/doc/Bayesian_SITAR_model_An_Introduction.Rmd | 57 bsitar-0.3.3/bsitar/inst/doc/Bayesian_SITAR_model_An_Introduction.html | 83 bsitar-0.3.3/bsitar/inst/doc/Bayesian_SITAR_model_fit.R | 839 bsitar-0.3.3/bsitar/inst/doc/Bayesian_SITAR_model_fit.Rmd | 67 bsitar-0.3.3/bsitar/inst/doc/Bayesian_SITAR_model_fit.html | 126 bsitar-0.3.3/bsitar/man/add_model_criterion.Rd |only bsitar-0.3.3/bsitar/man/berkeley.Rd | 124 bsitar-0.3.3/bsitar/man/bsitar.Rd | 899 bsitar-0.3.3/bsitar/man/expose_model_functions.Rd |only bsitar-0.3.3/bsitar/man/fitted_draws.Rd |only bsitar-0.3.3/bsitar/man/getNsObject.Rd | 2 bsitar-0.3.3/bsitar/man/get_comparisons.Rd |only bsitar-0.3.3/bsitar/man/get_growthparameters.Rd |only bsitar-0.3.3/bsitar/man/get_predictions.Rd |only bsitar-0.3.3/bsitar/man/growthparameters.Rd |only bsitar-0.3.3/bsitar/man/hypothesis_test.Rd |only bsitar-0.3.3/bsitar/man/is.bgmfit.Rd |only bsitar-0.3.3/bsitar/man/loo_validation.Rd |only bsitar-0.3.3/bsitar/man/modelbased_growthparameters.Rd |only bsitar-0.3.3/bsitar/man/optimize_model.Rd |only bsitar-0.3.3/bsitar/man/pipe.Rd | 2 bsitar-0.3.3/bsitar/man/plot_conditional_effects.Rd |only bsitar-0.3.3/bsitar/man/plot_curves.Rd |only bsitar-0.3.3/bsitar/man/plot_ppc.Rd |only bsitar-0.3.3/bsitar/man/predict_draws.Rd |only bsitar-0.3.3/bsitar/man/update_model.Rd |only bsitar-0.3.3/bsitar/tests/testthat.R | 11 bsitar-0.3.3/bsitar/tests/testthat/helper-ci.R |only bsitar-0.3.3/bsitar/tests/testthat/helper-data.R |only bsitar-0.3.3/bsitar/tests/testthat/test-bsitar-nsk-settings.R |only bsitar-0.3.3/bsitar/tests/testthat/test-bsitar-nsp-settings.R |only bsitar-0.3.3/bsitar/tests/testthat/test-bsitar-rcs-settings.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_comparisons-d0.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_comparisons-d1.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_growthparameters_nocov.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_predictions-bycov-byvariable.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_predictions-bycov.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_predictions-comparisons-bycov-byvariable.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_predictions-comparisons-d0.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_predictions-comparisons-parameters-default-d0.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_predictions-comparisons-parameters-default-d1.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_predictions-comparisons-slopes-bycov.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_predictions-comparisons-slopes.R |only bsitar-0.3.3/bsitar/tests/testthat/test-get_predictions.R |only bsitar-0.3.3/bsitar/tests/testthat/test-hypothesis_test.R |only bsitar-0.3.3/bsitar/tests/testthat/test-modelbased_growthparameters.R |only bsitar-0.3.3/bsitar/vignettes/Bayesian_SITAR_model_An_Introduction.Rmd | 57 bsitar-0.3.3/bsitar/vignettes/Bayesian_SITAR_model_fit.Rmd | 67 bsitar-0.3.3/bsitar/vignettes/bibliography.bib | 1 131 files changed, 45160 insertions(+), 23412 deletions(-)
Title: Toolbox for Downloading and Extracting Copernicus AgERA5 Data
Description: Tools for downloading and extracting data from the Copernicus "Agrometeorological indicators
from 1979 to present derived from reanalysis"
<https://cds.climate.copernicus.eu/datasets/sis-agrometeorological-indicators?tab=overview> (AgERA5).
Author: David Brown [aut, cre] ,
Kaue de Sousa [ctb] ,
Jacob van Etten [ths] ,
Sytze de Bruin [ths]
Maintainer: David Brown <db877@cornell.edu>
Diff between ag5Tools versions 0.0.2 dated 2023-10-12 and 0.0.3 dated 2026-03-25
DESCRIPTION | 18 ++++++------- MD5 | 32 ++++++++++++------------ NEWS.md | 4 +++ R/check_args.R | 28 ++++++++++----------- R/download.R | 19 +++++++++----- R/extract.R | 56 +++++++++++++++++++++---------------------- R/get_file_path.R | 8 +++++- README.md | 14 +++++----- build/vignette.rds |binary inst/doc/ag5Tools.R | 20 +++++++-------- inst/doc/ag5Tools.Rmd | 6 ++-- inst/doc/ag5Tools.html | 9 +++--- inst/doc/extracing_data.R | 32 ++++++++++++------------ inst/doc/extracing_data.html | 3 +- man/ag5_download.Rd | 11 ++++++-- man/ag5_extract.Rd | 56 +++++++++++++++++++++---------------------- vignettes/ag5Tools.Rmd | 6 ++-- 17 files changed, 172 insertions(+), 150 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-27 1.1.0
2021-11-19 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-08 0.0.5
2022-01-04 0.0.3
2021-06-19 0.0.2
2021-06-14 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-06 1.0.6
2024-06-27 1.0.5
2024-06-10 1.0.4
2024-06-08 1.0.3
2024-04-14 1.0.2
2024-02-05 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-14 2.1.1
2022-04-08 2.1.0
2021-09-22 2.0.0
2020-01-15 1.1.0
2019-06-14 1.0.0
2019-02-04 0.7.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-01 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-08-25 0.8.1
2021-09-02 0.8.0
2016-02-09 0.7.3
2015-08-31 0.7.2
2014-02-08 0.7.1
2014-01-15 0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-03 0.3.0
2019-03-08 0.2.1
2018-07-03 0.2.0
2016-08-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-30 0.3.0
2017-04-16 0.2.0
2016-06-05 0.1.5.20
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-09 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-21 0.1.4
2016-08-09 0.1.3
2016-07-27 0.1.2
2016-07-25 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-22 0.3.0
2021-09-14 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-27 0.3.2
2024-08-28 0.3.1
2022-08-31 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-17 3.0.0
2021-02-10 2.0.2
2020-09-21 2.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-27 0.9.1
2017-10-28 0.9
2016-03-04 0.8
2013-03-04 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-22 0.26.6.14
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-28 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-02 0.6.0
2018-12-03 0.5.2
2018-04-03 0.4.3
2017-10-24 0.3.4
2017-10-17 0.3.3
2017-01-14 0.1.23
2016-12-19 0.1.16
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-11 0.1.1
2017-04-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-30 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-26 1.2.5
2023-07-19 1.2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-16 0.1