Title: Simple Definition Of Time Intervals
Description: Simple definition of time intervals for the current, previous, and next week, month, quarter and year.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between timeperiodsR versions 0.7.3 dated 2024-01-23 and 0.7.5 dated 2026-04-16
DESCRIPTION | 9 - MD5 | 20 +- NEWS.md | 8 - R/check_dayoffs.R | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/tpr_intro.R | 28 +-- inst/doc/tpr_intro.Rmd | 2 inst/doc/tpr_intro.html | 355 +++++++++++++++++++++++++++++++++++++----------- man/check_dayoffs.Rd | 2 vignettes/tpr_intro.Rmd | 2 11 files changed, 322 insertions(+), 108 deletions(-)
Title: R Analyzer for Large-Scale Assessments
Description: Download, prepare and analyze data from large-scale assessments and
surveys with complex sampling and assessment design (see 'Rutkowski',
2010 <doi:10.3102/0013189X10363170>). Such studies are, for example,
international assessments like 'TIMSS', 'PIRLS' and 'PISA'. A graphical
interface is available for the non-technical user.The package includes
functions to covert the original data from 'SPSS' into 'R' data sets
keeping the user-defined missing values, merge data from different
respondents and/or countries, generate variable dictionaries, modify
data, produce descriptive statistics (percentages, means, percentiles,
benchmarks) and multivariate statistics (correlations, linear
regression, binary logistic regression). The number of supported
studies and analysis types will increase in future. For a general
presentation of the package, see 'Mirazchiyski', 2021a
(<doi:10.1186/s40536-021-00114-4>). For detailed technical aspects of
the package, see 'Mirazchiyski', 2021b (< [...truncated...]
Author: Plamen V. Mirazchiyski [aut, cre]
Maintainer: Plamen V. Mirazchiyski <plamen.mirazchiyski@gmail.com>
Diff between RALSA versions 1.6.5 dated 2026-03-17 and 1.6.6 dated 2026-04-16
DESCRIPTION | 18 ++--- MD5 | 54 ++++++++--------- NEWS.md | 4 + R/RALSA.r | 2 R/common.r | 7 -- R/lsa.bench.r | 2 R/lsa.bin.log.reg.r | 2 R/lsa.corr.r | 2 R/lsa.crosstabs.r | 2 R/lsa.data.diag.r | 4 - R/lsa.lin.reg.r | 2 R/lsa.merge.data.r | 6 - R/lsa.pcts.means.r | 2 R/lsa.prctls.r | 2 R/zzz.r | 4 - README.md | 7 -- inst/shiny/GUI/server.r | 152 ++++++++++++++++++++++++------------------------ inst/shiny/GUI/ui.r | 36 ++++++----- man/RALSA.Rd | 2 man/lsa.bench.Rd | 2 man/lsa.bin.log.reg.Rd | 2 man/lsa.corr.Rd | 2 man/lsa.crosstabs.Rd | 2 man/lsa.data.diag.Rd | 2 man/lsa.lin.reg.Rd | 2 man/lsa.merge.data.Rd | 2 man/lsa.pcts.means.Rd | 2 man/lsa.prctls.Rd | 2 28 files changed, 163 insertions(+), 165 deletions(-)
Title: Bayesian Network Meta-Analysis of Individual and Aggregate Data
Description: Network meta-analysis and network meta-regression models for
aggregate data, individual patient data, and mixtures of both individual
and aggregate data using multilevel network meta-regression as described by
Phillippo et al. (2020) <doi:10.1111/rssa.12579>. Models are estimated in a
Bayesian framework using 'Stan'.
Author: David M. Phillippo [aut, cre] ,
Samuel J. Perren [ctb] ,
Niels Dunnewind [ctb]
Maintainer: David M. Phillippo <david.phillippo@bristol.ac.uk>
Diff between multinma versions 0.9.0 dated 2026-04-13 and 0.9.1 dated 2026-04-16
DESCRIPTION | 6 MD5 | 22 NEWS.md | 5 README.md | 2 build/partial.rdb |binary inst/REFERENCES.bib | 3 inst/doc/example_social_anxiety.html | 4 inst/doc/vignette_overview.html | 4 inst/stan/survival_mspline.stan | 19 inst/stan/survival_param.stan | 24 src/stanExports_survival_mspline.h | 2738 +++++++++++++++++------------------ src/stanExports_survival_param.h | 2536 ++++++++++++++++---------------- 12 files changed, 2691 insertions(+), 2672 deletions(-)
Title: Access your Coletum's Data from API
Description: Get your data (forms, structures, answers) from Coletum
<https://coletum.com> to handle and analyse.
Author: Andre Smaniotto [aut, cre],
Marcelo Magnani [aut],
Rodrigo Sant'Ana [aut],
GeoSapiens [cph, fnd]
Maintainer: Andre Smaniotto <smaniotto@geosapiens.com.br>
Diff between RColetum versions 0.2.2 dated 2022-10-20 and 1.0.0 dated 2026-04-16
RColetum-0.2.2/RColetum/man/GetFormStructure.Rd |only RColetum-0.2.2/RColetum/tests/testthat/test-GetFormStructure.R |only RColetum-1.0.0/RColetum/DESCRIPTION | 9 RColetum-1.0.0/RColetum/MD5 | 38 RColetum-1.0.0/RColetum/NAMESPACE | 3 RColetum-1.0.0/RColetum/NEWS.md | 19 RColetum-1.0.0/RColetum/R/FlattenAnswers.R |only RColetum-1.0.0/RColetum/R/GetAnswers.R | 461 RColetum-1.0.0/RColetum/R/GetForm.R |only RColetum-1.0.0/RColetum/R/GetFormStructure.R | 102 RColetum-1.0.0/RColetum/R/GetForms.R | 123 RColetum-1.0.0/RColetum/R/RColetum.r | 4 RColetum-1.0.0/RColetum/R/utils.R | 562 RColetum-1.0.0/RColetum/README.md | 46 RColetum-1.0.0/RColetum/man/FlattenAnswers.Rd |only RColetum-1.0.0/RColetum/man/GetAnswers.Rd | 146 RColetum-1.0.0/RColetum/man/GetForm.Rd |only RColetum-1.0.0/RColetum/man/GetForms.Rd | 46 RColetum-1.0.0/RColetum/man/RColetum-package.Rd | 4 RColetum-1.0.0/RColetum/tests/testthat/test-FlattenAnswers.R |only RColetum-1.0.0/RColetum/tests/testthat/test-GetAnswers.R | 995 RColetum-1.0.0/RColetum/tests/testthat/test-GetAnswersComplexForm.R |75267 ---------- RColetum-1.0.0/RColetum/tests/testthat/test-GetForm.R |only RColetum-1.0.0/RColetum/tests/testthat/test-GetForms.R | 175 24 files changed, 1065 insertions(+), 76935 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-13 2.6.2
2023-08-20 2.6.1
2021-01-13 2.6.0
2020-07-10 2.5.1
2020-04-14 2.5.0
2020-03-30 2.2.0
2020-03-22 2.1.1
2019-01-10 2.1.0
2019-01-02 2.0
2019-01-02 2.0.1
2018-08-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-07-02 1.8
2023-02-01 1.7
2022-03-16 1.6
2021-04-16 1.5
2018-10-24 1.4
2018-09-01 1.2
2017-11-16 1.1
2017-03-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-26 2.2.0
2012-08-23 2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-11 1.0.1
2015-03-10 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-08 0.0-12
2013-03-19 0.0-7
2012-08-23 0.0-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-19 0.1.6
2013-05-16 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-05 2.0-6
2015-07-29 2.0-5
2015-06-17 2.0-4
2015-05-31 2.0-3
2013-11-17 2.0-2
2013-07-21 2.0-1
2012-08-23 2.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-12 0.9.15
2024-07-07 0.9.13
2024-01-17 0.9.12
2023-05-08 0.9.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-31 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-03 2.0.0
2015-07-27 1.6.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-17 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-26 0.2.1
2020-11-24 0.2.0
2020-02-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-23 1.5
Title: Calculate Metrics for Trauma System Performance
Description: Hospitals, hospital systems, and even trauma systems that
provide care to injured patients may not be aware of robust metrics
that can help gauge the efficacy of their programs in saving the lives
of injured patients. 'traumar' provides robust functions driven by
the academic literature to automate the calculation of relevant
metrics to individuals desiring to measure the performance of their
trauma center or even a trauma system. 'traumar' also provides some
helper functions for the data analysis journey. Users can refer to the
following publications for descriptions of the methods used in
'traumar'. TRISS methodology, including probability of survival, and
the W, M, and Z Scores - Flora (1978)
<doi:10.1097/00005373-197810000-00003>, Boyd et al. (1987,
PMID:3106646), Llullaku et al. (2009) <doi:10.1186/1749-7922-4-2>,
Singh et al. (2011) <doi:10.4103/0974-2700.86626>, Baker et al. (1974,
PMID:4814394), and Champion et al. (1989)
<doi:10.1097/00005373-198905000- [...truncated...]
Author: Nicolas Foss [aut, cre],
Iowa Department of Health and Human Services [cph]
Maintainer: Nicolas Foss <nicolas.foss@hhs.iowa.gov>
Diff between traumar versions 1.2.4 dated 2026-02-05 and 1.2.5 dated 2026-04-16
DESCRIPTION | 6 - MD5 | 8 - NEWS.md | 272 +++++++++++++++++++----------------------------------- R/seqic_7.R | 5 build/partial.rdb |binary 5 files changed, 109 insertions(+), 182 deletions(-)
Title: Numeric Matrices K-NN and PCA Imputation
Description: Fast k-nearest neighbors (K-NN) and principal component
analysis (PCA) imputation algorithms for missing values in
high-dimensional numeric matrices, i.e., epigenetic data. For
extremely high-dimensional data with ordered features, a sliding
window approach for K-NN or PCA imputation is provided. Additional
features include group-wise imputation (e.g., by chromosome),
hyperparameter tuning with repeated cross-validation, multi-core
parallelization, and optional subset imputation. The K-NN algorithm is
described in: Hastie, T., Tibshirani, R., Sherlock, G., Eisen, M.,
Brown, P. and Botstein, D. (1999) "Imputing Missing Data for Gene
Expression Arrays". The PCA imputation is an optimized version of the
imputePCA() function from the 'missMDA' package described in: Josse,
J. and Husson, F. (2016) <doi:10.18637/jss.v070.i01> "missMDA: A
Package for Handling Missing Values in Multivariate Data Analysis".
Author: Hung Pham [aut, cre, cph]
Maintainer: Hung Pham <amser.hoanghung@gmail.com>
Diff between slideimp versions 0.5.4 dated 2026-01-07 and 1.0.0 dated 2026-04-16
slideimp-0.5.4/slideimp/R/khanmiss1.R |only slideimp-0.5.4/slideimp/data |only slideimp-0.5.4/slideimp/man/group_features.Rd |only slideimp-0.5.4/slideimp/man/khanmiss1.Rd |only slideimp-0.5.4/slideimp/man/print.ImputedMatrix.Rd |only slideimp-0.5.4/slideimp/src/utils.cpp |only slideimp-1.0.0/slideimp/DESCRIPTION | 18 slideimp-1.0.0/slideimp/MD5 | 106 - slideimp-1.0.0/slideimp/NAMESPACE | 11 slideimp-1.0.0/slideimp/NEWS.md | 93 slideimp-1.0.0/slideimp/R/RcppExports.R | 98 slideimp-1.0.0/slideimp/R/col_vars.R | 13 slideimp-1.0.0/slideimp/R/group_imp.R | 1242 +++++++----- slideimp-1.0.0/slideimp/R/knn_imp.R | 253 +- slideimp-1.0.0/slideimp/R/mean_imp_col.R | 68 slideimp-1.0.0/slideimp/R/pca_imp.R | 179 + slideimp-1.0.0/slideimp/R/print.R | 169 + slideimp-1.0.0/slideimp/R/sim_mat.R |only slideimp-1.0.0/slideimp/R/slide_imp.R | 481 +++- slideimp-1.0.0/slideimp/R/slideimp_registry.R |only slideimp-1.0.0/slideimp/R/tune_imp.R | 1317 ++++++++----- slideimp-1.0.0/slideimp/R/utils.R | 206 +- slideimp-1.0.0/slideimp/README.md | 459 +++- slideimp-1.0.0/slideimp/build/partial.rdb |binary slideimp-1.0.0/slideimp/build/vignette.rds |binary slideimp-1.0.0/slideimp/inst/doc/slideimp.R | 207 +- slideimp-1.0.0/slideimp/inst/doc/slideimp.Rmd | 254 +- slideimp-1.0.0/slideimp/inst/doc/slideimp.html | 678 ++++-- slideimp-1.0.0/slideimp/man/col_vars.Rd | 57 slideimp-1.0.0/slideimp/man/compute_metrics.Rd | 27 slideimp-1.0.0/slideimp/man/group_imp.Rd | 254 +- slideimp-1.0.0/slideimp/man/knn_imp.Rd | 184 + slideimp-1.0.0/slideimp/man/mean_imp_col.Rd | 17 slideimp-1.0.0/slideimp/man/pca_imp.Rd | 80 slideimp-1.0.0/slideimp/man/prep_groups.Rd |only slideimp-1.0.0/slideimp/man/print.slideimp_results.Rd |only slideimp-1.0.0/slideimp/man/print.slideimp_sim.Rd |only slideimp-1.0.0/slideimp/man/print.slideimp_tbl.Rd |only slideimp-1.0.0/slideimp/man/register_group_resolver.Rd |only slideimp-1.0.0/slideimp/man/sample_na_loc.Rd |only slideimp-1.0.0/slideimp/man/sim_mat.Rd | 65 slideimp-1.0.0/slideimp/man/slide_imp.Rd | 197 + slideimp-1.0.0/slideimp/man/tune_imp.Rd | 230 +- slideimp-1.0.0/slideimp/src/RcppExports.cpp | 153 + slideimp-1.0.0/slideimp/src/eig_sym_sel.h |only slideimp-1.0.0/slideimp/src/fastSVD.cpp | 476 ++-- slideimp-1.0.0/slideimp/src/find_windows.cpp |only slideimp-1.0.0/slideimp/src/find_windows_flank.cpp |only slideimp-1.0.0/slideimp/src/impute_knn_brute.cpp | 960 +++++---- slideimp-1.0.0/slideimp/src/impute_knn_mlpack.cpp | 91 slideimp-1.0.0/slideimp/src/imputed_value.cpp | 167 - slideimp-1.0.0/slideimp/src/imputed_value.h | 34 slideimp-1.0.0/slideimp/src/loc_timer.h |only slideimp-1.0.0/slideimp/src/mat_stats.cpp |only slideimp-1.0.0/slideimp/src/openmp_utils.cpp |only slideimp-1.0.0/slideimp/src/sample_each_rep_cpp.cpp |only slideimp-1.0.0/slideimp/tests/testthat/test-col_vars.R | 3 slideimp-1.0.0/slideimp/tests/testthat/test-group_imp.R | 716 +++++-- slideimp-1.0.0/slideimp/tests/testthat/test-knn_imp.R | 261 -- slideimp-1.0.0/slideimp/tests/testthat/test-mean_imp_col.R | 9 slideimp-1.0.0/slideimp/tests/testthat/test-pca_imp.R | 192 + slideimp-1.0.0/slideimp/tests/testthat/test-sim_mat.R |only slideimp-1.0.0/slideimp/tests/testthat/test-slide_imp.R | 556 ++++- slideimp-1.0.0/slideimp/tests/testthat/test-tune_imp.R | 581 +++++ slideimp-1.0.0/slideimp/vignettes/slideimp.Rmd | 254 +- 65 files changed, 7513 insertions(+), 3903 deletions(-)
Title: Assess Study Cohorts Using a Common Data Model
Description: Phenotype study cohorts in data mapped to the
Observational Medical Outcomes Partnership Common Data Model. Diagnostics
are run at the database, code list, cohort, and population level to assess
whether study cohorts are ready for research.
Author: Edward Burn [aut, cre] ,
Marti Catala [aut] ,
Xihang Chen [aut] ,
Marta Alcalde-Herraiz [aut] ,
Nuria Mercade-Besora [aut] ,
Albert Prats-Uribe [aut]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between PhenotypeR versions 0.3.4 dated 2026-03-25 and 0.4.0 dated 2026-04-16
PhenotypeR-0.3.4/PhenotypeR/inst/doc/CodelistDiagnostics.R |only PhenotypeR-0.3.4/PhenotypeR/inst/doc/CodelistDiagnostics.Rmd |only PhenotypeR-0.3.4/PhenotypeR/inst/doc/CodelistDiagnostics.html |only PhenotypeR-0.3.4/PhenotypeR/inst/doc/CohortDiagnostics.R |only PhenotypeR-0.3.4/PhenotypeR/inst/doc/CohortDiagnostics.Rmd |only PhenotypeR-0.3.4/PhenotypeR/inst/doc/CohortDiagnostics.html |only PhenotypeR-0.3.4/PhenotypeR/inst/doc/DatabaseDiagnostics.R |only PhenotypeR-0.3.4/PhenotypeR/inst/doc/DatabaseDiagnostics.Rmd |only PhenotypeR-0.3.4/PhenotypeR/inst/doc/DatabaseDiagnostics.html |only PhenotypeR-0.3.4/PhenotypeR/inst/doc/PopulationDiagnostics.R |only PhenotypeR-0.3.4/PhenotypeR/inst/doc/PopulationDiagnostics.Rmd |only PhenotypeR-0.3.4/PhenotypeR/inst/doc/PopulationDiagnostics.html |only PhenotypeR-0.3.4/PhenotypeR/man/clinicalTableSample.Rd |only PhenotypeR-0.3.4/PhenotypeR/man/drugExposureSampleDoc.Rd |only PhenotypeR-0.3.4/PhenotypeR/man/measurementSampleDoc.Rd |only PhenotypeR-0.3.4/PhenotypeR/vignettes/CodelistDiagnostics.Rmd |only PhenotypeR-0.3.4/PhenotypeR/vignettes/CohortDiagnostics.Rmd |only PhenotypeR-0.3.4/PhenotypeR/vignettes/DatabaseDiagnostics.Rmd |only PhenotypeR-0.3.4/PhenotypeR/vignettes/PopulationDiagnostics.Rmd |only PhenotypeR-0.4.0/PhenotypeR/DESCRIPTION | 9 PhenotypeR-0.4.0/PhenotypeR/MD5 | 136 - PhenotypeR-0.4.0/PhenotypeR/NAMESPACE | 3 PhenotypeR-0.4.0/PhenotypeR/R/codelistDiagnostics.R | 94 - PhenotypeR-0.4.0/PhenotypeR/R/cohortDiagnostics.R | 280 ++- PhenotypeR-0.4.0/PhenotypeR/R/databaseDiagnostics.R | 239 +- PhenotypeR-0.4.0/PhenotypeR/R/documentationHelper.R | 32 PhenotypeR-0.4.0/PhenotypeR/R/downloadClinicalDescriptionTemplate.R |only PhenotypeR-0.4.0/PhenotypeR/R/downloadDatabaseDescriptionTemplate.R |only PhenotypeR-0.4.0/PhenotypeR/R/getClinicalDescription.R |only PhenotypeR-0.4.0/PhenotypeR/R/getCohortExpectations.R | 22 PhenotypeR-0.4.0/PhenotypeR/R/phenotypeDiagnostics.R | 184 +- PhenotypeR-0.4.0/PhenotypeR/R/populationDiagnostics.R | 77 PhenotypeR-0.4.0/PhenotypeR/R/shinyDiagnostics.R | 208 +- PhenotypeR-0.4.0/PhenotypeR/R/utilities.R | 113 + PhenotypeR-0.4.0/PhenotypeR/README.md | 2 PhenotypeR-0.4.0/PhenotypeR/build/vignette.rds |binary PhenotypeR-0.4.0/PhenotypeR/inst/doc/CreateDescriptions.R |only PhenotypeR-0.4.0/PhenotypeR/inst/doc/CreateDescriptions.Rmd |only PhenotypeR-0.4.0/PhenotypeR/inst/doc/CreateDescriptions.html |only PhenotypeR-0.4.0/PhenotypeR/inst/doc/PhenotypeDiagnostics.R | 61 PhenotypeR-0.4.0/PhenotypeR/inst/doc/PhenotypeDiagnostics.Rmd | 161 + PhenotypeR-0.4.0/PhenotypeR/inst/doc/PhenotypeDiagnostics.html | 285 ++- PhenotypeR-0.4.0/PhenotypeR/inst/doc/PhenotypeExpectations.R | 14 PhenotypeR-0.4.0/PhenotypeR/inst/doc/PhenotypeExpectations.Rmd | 22 PhenotypeR-0.4.0/PhenotypeR/inst/doc/PhenotypeExpectations.html | 91 - PhenotypeR-0.4.0/PhenotypeR/inst/doc/ShinyDiagnostics.R | 43 PhenotypeR-0.4.0/PhenotypeR/inst/doc/ShinyDiagnostics.Rmd | 52 PhenotypeR-0.4.0/PhenotypeR/inst/doc/ShinyDiagnostics.html | 104 - PhenotypeR-0.4.0/PhenotypeR/inst/shiny/data/raw/clinical_descriptions |only PhenotypeR-0.4.0/PhenotypeR/inst/shiny/data/raw/database_descriptions |only PhenotypeR-0.4.0/PhenotypeR/inst/shiny/data/raw/expectations/expectations.csv |only PhenotypeR-0.4.0/PhenotypeR/inst/shiny/global.R | 17 PhenotypeR-0.4.0/PhenotypeR/inst/shiny/scripts/functions.R | 123 + PhenotypeR-0.4.0/PhenotypeR/inst/shiny/scripts/preprocess.R | 201 ++ PhenotypeR-0.4.0/PhenotypeR/inst/shiny/server.R | 276 ++- PhenotypeR-0.4.0/PhenotypeR/inst/shiny/ui.R | 890 +++++----- PhenotypeR-0.4.0/PhenotypeR/man/codelistDiagnostics.Rd | 37 PhenotypeR-0.4.0/PhenotypeR/man/cohortDiagnostics.Rd | 30 PhenotypeR-0.4.0/PhenotypeR/man/databaseDiagnostics.Rd | 39 PhenotypeR-0.4.0/PhenotypeR/man/downloadClinicalDescriptionTemplate.Rd |only PhenotypeR-0.4.0/PhenotypeR/man/downloadDatabaseDescriptionTemplate.Rd |only PhenotypeR-0.4.0/PhenotypeR/man/drugDiagnosticsSampleDoc.Rd |only PhenotypeR-0.4.0/PhenotypeR/man/getClinicalDescription.Rd |only PhenotypeR-0.4.0/PhenotypeR/man/getCohortExpectations.Rd | 4 PhenotypeR-0.4.0/PhenotypeR/man/measurementDiagnosticsSampleDoc.Rd |only PhenotypeR-0.4.0/PhenotypeR/man/phenotypeDiagnostics.Rd | 104 - PhenotypeR-0.4.0/PhenotypeR/man/populationDiagnostics.Rd | 21 PhenotypeR-0.4.0/PhenotypeR/man/shinyDiagnostics.Rd | 23 PhenotypeR-0.4.0/PhenotypeR/tests/testthat/test-codelistDiagnostics.R | 51 PhenotypeR-0.4.0/PhenotypeR/tests/testthat/test-cohortDiagnostics.R | 35 PhenotypeR-0.4.0/PhenotypeR/tests/testthat/test-databaseDiagnostics.R | 73 PhenotypeR-0.4.0/PhenotypeR/tests/testthat/test-dbms.R | 14 PhenotypeR-0.4.0/PhenotypeR/tests/testthat/test-getClinicalDescription.R |only PhenotypeR-0.4.0/PhenotypeR/tests/testthat/test-getCohortExpectations.R | 14 PhenotypeR-0.4.0/PhenotypeR/tests/testthat/test-phenotypeDiagnostics.R | 186 +- PhenotypeR-0.4.0/PhenotypeR/tests/testthat/test-populationDiagnostics.R | 2 PhenotypeR-0.4.0/PhenotypeR/tests/testthat/test-shinyDiagnostics.R | 7 PhenotypeR-0.4.0/PhenotypeR/vignettes/CreateDescriptions.Rmd |only PhenotypeR-0.4.0/PhenotypeR/vignettes/CreateDescriptionsFigures |only PhenotypeR-0.4.0/PhenotypeR/vignettes/PhenotypeDiagnostics.Rmd | 161 + PhenotypeR-0.4.0/PhenotypeR/vignettes/PhenotypeExpectations.Rmd | 22 PhenotypeR-0.4.0/PhenotypeR/vignettes/ShinyDiagnostics.Rmd | 52 82 files changed, 3093 insertions(+), 1521 deletions(-)
Title: Indirect Effects Testing Methods in Mediation Analysis
Description: Used in testing if the indirect effect from linear regression mediation analysis is equal to 0. Includes established methods such as the Sobel Test, Joint Significant test (maxP), and tests based off the distribution of the Product or Normal Random Variables. Additionally, this package adds more powerful tests based on Intersection-Union theory. These tests are the S-Test, the ps-test, and the ascending squares test. These new methods are uniformly more powerful than maxP, which is more powerful than Sobel and less anti-conservative than the Product of Normal Random Variables. These methods are explored by Kidd and Lin, (2024) <doi:10.1007/s12561-023-09386-6> and Kidd et al., (2025) <doi:10.1007/s10260-024-00777-7>.
Author: John Kidd [aut, cre]
Maintainer: John Kidd <jkidd@uvu.edu>
Diff between ieTest versions 2.0 dated 2025-04-02 and 2.1 dated 2026-04-16
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 1 - src/Makevars | 2 +- src/Makevars.win | 2 +- src/asq_one.cpp | 2 +- src/asq_ord.cpp | 2 +- src/maxP_one.cpp | 2 +- src/maxp_ord.cpp | 2 +- src/ps_one.cpp | 2 +- src/ps_ord.cpp | 3 +-- 11 files changed, 23 insertions(+), 25 deletions(-)
Title: The Equiplot Graph and Complex Inequality Measures
Description: Generates the equiplot, an iconic dot-plot graph for visualizing inequalities, as well as three complex inequality measures: the slope index of inequality, the concentration index and the mean absolute difference to the mean. For more details see World Health Organization (2013) <https://www.who.int/docs/default-source/gho-documents/health-equity/handbook-on-health-inequality-monitoring/handbook-on-health-inequality-monitoring.pdf>.
Author: Leonardo Ferreira [aut, cre],
Luisa Arroyave [aut]
Maintainer: Leonardo Ferreira <lferreira@equidade.org>
Diff between ICEHmeasures versions 1.0.1 dated 2026-03-11 and 1.1.0 dated 2026-04-16
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/cixr.R | 24 ++++++++++++++++++++++-- R/mad.R | 26 ++++++++++++++++++++++++-- R/siilogit.R | 27 +++++++++++++++++++++------ 5 files changed, 74 insertions(+), 17 deletions(-)
Title: Vintage Sparse PCA for Semi-Parametric Factor Analysis
Description: Provides fast spectral estimation of latent factors in random
dot product graphs using the vsp estimator. Under mild assumptions,
the vsp estimator is consistent for (degree-corrected) stochastic
blockmodels, (degree-corrected) mixed-membership stochastic
blockmodels, and degree-corrected overlapping stochastic blockmodels.
Author: Karl Rohe [aut],
Muzhe Zeng [aut],
Alex Hayes [aut, cre, cph] ,
Fan Chen [aut]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between vsp versions 0.1.3 dated 2025-08-20 and 0.1.4 dated 2026-04-16
DESCRIPTION | 21 +++++++++++-------- MD5 | 31 +++++++++++++++++------------ NAMESPACE | 8 +++++++ NEWS.md | 7 ++++++ R/localization.R |only R/plots.R | 6 +---- R/utils.R | 33 +++++++++++++++++++++++++++++++ README.md | 12 +++++------ build/vignette.rds |binary inst/doc/bff.html | 4 +-- man/cumulative_participation.Rd |only man/figures/README-unnamed-chunk-1-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/ipr.Rd |only man/iprs.Rd |only man/localization_statistics.Rd |only man/plot_cumulative_curves.Rd |only man/plot_ipr_curves.Rd |only man/plot_varimax_z_pairs.Rd | 4 +-- 20 files changed, 91 insertions(+), 35 deletions(-)
Title: Plotting Tool for Brain Atlases
Description: Provides a 'ggplot2' geom and position for visualizing brain
region data on cortical, subcortical, and white matter tract atlases.
Brain atlas geometries are stored as simple features ('sf'), enabling
seamless integration with the 'ggplot2' ecosystem including faceting,
custom scales, and themes. Mowinckel & Vidal-Piñeiro (2020)
<doi:10.1177/2515245920928009>.
Author: Athanasia Mo Mowinckel [aut, cre, cph] ,
Didac Vidal-Pineiro [aut, cph] ,
Ramiro Magno [aut] ,
Center for Lifespan Changes in Brain and Cognition, University of Oslo,
Norway [cph]
Maintainer: Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>
Diff between ggseg versions 2.1.0 dated 2026-04-03 and 2.1.1 dated 2026-04-16
ggseg-2.1.0/ggseg/tests/testthat/Rplots.pdf |only ggseg-2.1.1/ggseg/DESCRIPTION | 8 ggseg-2.1.1/ggseg/MD5 | 59 - ggseg-2.1.1/ggseg/NAMESPACE | 7 ggseg-2.1.1/ggseg/NEWS.md | 4 ggseg-2.1.1/ggseg/R/adapt_scales.R | 12 ggseg-2.1.1/ggseg/R/brain_join.R | 2 ggseg-2.1.1/ggseg/R/geom-brain.R | 4 ggseg-2.1.1/ggseg/R/ggseg-package.R | 5 ggseg-2.1.1/ggseg/R/layer-brain.R | 27 ggseg-2.1.1/ggseg/R/position-brain.R | 298 ++++++---- ggseg-2.1.1/ggseg/R/scale-brain.R | 9 ggseg-2.1.1/ggseg/inst/doc/external-data.R | 6 ggseg-2.1.1/ggseg/inst/doc/external-data.Rmd | 6 ggseg-2.1.1/ggseg/inst/doc/external-data.html | 8 ggseg-2.1.1/ggseg/inst/doc/ggseg.R | 27 ggseg-2.1.1/ggseg/inst/doc/ggseg.Rmd | 27 ggseg-2.1.1/ggseg/inst/doc/ggseg.html | 83 +- ggseg-2.1.1/ggseg/man/scale_brain2-deprecated.Rd | 4 ggseg-2.1.1/ggseg/tests/testthat/test-annotate-brain.R | 18 ggseg-2.1.1/ggseg/tests/testthat/test-brain_join.R | 4 ggseg-2.1.1/ggseg/tests/testthat/test-coord-funcs.R | 6 ggseg-2.1.1/ggseg/tests/testthat/test-coords.R | 6 ggseg-2.1.1/ggseg/tests/testthat/test-geom-brain.R | 19 ggseg-2.1.1/ggseg/tests/testthat/test-position-brain.R | 180 +++++- ggseg-2.1.1/ggseg/tests/testthat/test-read_freesurfer_stats.R | 34 - ggseg-2.1.1/ggseg/tests/testthat/test-scale-brain.R | 28 ggseg-2.1.1/ggseg/tests/testthat/test-theme_brain.R | 6 ggseg-2.1.1/ggseg/tests/testthat/test-utils.R | 16 ggseg-2.1.1/ggseg/vignettes/external-data.Rmd | 6 ggseg-2.1.1/ggseg/vignettes/ggseg.Rmd | 27 31 files changed, 604 insertions(+), 342 deletions(-)
Title: Imports, Processes, and Visualizes Biomechanical Pressure Data
Description: Allows biomechanical pressure data from a range of systems to be imported and processed in a reproducible manner. Automatic and manual tools are included to let the user define regions (masks) to be analyzed. Also includes functions for visualizing and animating pressure data. Example methods are described in Shi et al., (2022) <doi:10.1038/s41598-022-19814-0>, Lee et al., (2014) <doi:10.1186/1757-1146-7-18>, van der Zward et al., (2014) <doi:10.1186/1757-1146-7-20>, Najafi et al., (2010) <doi:10.1016/j.gaitpost.2009.09.003>, Cavanagh and Rodgers (1987) <doi:10.1016/0021-9290(87)90255-7>.
Author: Scott Telfer [aut, cre, cph] ,
Ellen Li [aut]
Maintainer: Scott Telfer <scott.telfer@gmail.com>
Diff between pressuRe versions 0.2.5 dated 2025-02-20 and 0.2.7 dated 2026-04-16
pressuRe-0.2.5/pressuRe/R/data.R |only pressuRe-0.2.5/pressuRe/data |only pressuRe-0.2.5/pressuRe/man/pedar_insole_areas.Rd |only pressuRe-0.2.5/pressuRe/man/pedar_insole_grid.Rd |only pressuRe-0.2.7/pressuRe/DESCRIPTION | 19 pressuRe-0.2.7/pressuRe/MD5 | 62 - pressuRe-0.2.7/pressuRe/NAMESPACE | 263 ++-- pressuRe-0.2.7/pressuRe/NEWS.md | 7 pressuRe-0.2.7/pressuRe/R/pressuRe_functions.R | 784 +++++++++++--- pressuRe-0.2.7/pressuRe/build/partial.rdb |binary pressuRe-0.2.7/pressuRe/inst/extdata/footscan_test.xls |binary pressuRe-0.2.7/pressuRe/inst/extdata/stappone_example.csv |only pressuRe-0.2.7/pressuRe/man/animate_pressure.Rd | 8 pressuRe-0.2.7/pressuRe/man/arch_index.Rd | 4 pressuRe-0.2.7/pressuRe/man/auto_detect_side.Rd | 4 pressuRe-0.2.7/pressuRe/man/clean_pressure.Rd |only pressuRe-0.2.7/pressuRe/man/cop.Rd | 4 pressuRe-0.2.7/pressuRe/man/cpei.Rd | 8 pressuRe-0.2.7/pressuRe/man/create_mask_auto.Rd | 18 pressuRe-0.2.7/pressuRe/man/create_mask_manual.Rd | 12 pressuRe-0.2.7/pressuRe/man/edit_mask.Rd | 10 pressuRe-0.2.7/pressuRe/man/footprint.Rd | 4 pressuRe-0.2.7/pressuRe/man/load_emed.Rd | 4 pressuRe-0.2.7/pressuRe/man/load_footscan.Rd | 4 pressuRe-0.2.7/pressuRe/man/load_pedar.Rd | 4 pressuRe-0.2.7/pressuRe/man/load_pliance.Rd | 4 pressuRe-0.2.7/pressuRe/man/load_stappone.Rd |only pressuRe-0.2.7/pressuRe/man/load_tekscan.Rd | 10 pressuRe-0.2.7/pressuRe/man/load_xsensor.Rd | 4 pressuRe-0.2.7/pressuRe/man/mask_analysis.Rd | 4 pressuRe-0.2.7/pressuRe/man/plot_pressure.Rd | 4 pressuRe-0.2.7/pressuRe/man/pressure_interp.Rd | 4 pressuRe-0.2.7/pressuRe/man/select_steps.Rd | 6 pressuRe-0.2.7/pressuRe/man/whole_pressure_curve.Rd | 4 pressuRe-0.2.7/pressuRe/tests |only 35 files changed, 864 insertions(+), 395 deletions(-)
Title: Multiresolution Forecasting
Description: Forecasting of univariate time series using feature extraction with variable prediction methods is provided. Feature extraction is done with a redundant Haar wavelet transform with filter h = (0.5, 0.5). The advantage of the approach compared to typical Fourier based methods is an dynamic adaptation to varying seasonalities. Currently implemented prediction methods based on the selected wavelets levels and scales are a regression and a multi-layer perceptron. Forecasts can be computed for horizon 1 or higher. Model selection is performed with an evolutionary optimization. Selection criteria are currently the AIC criterion, the Mean Absolute Error or the Mean Root Error. The data is split into three parts for model selection: Training, test, and evaluation dataset. The training data is for computing the weights of a parameter set. The test data is for choosing the best parameter set. The evaluation data is for assessing the forecast performance of the best parameter set on new data unkn [...truncated...]
Author: Quirin Stier [aut, cre, ctb] ,
Michael Thrun [ths, cph, rev, fnd, ctb]
Maintainer: Quirin Stier <research@quirin-stier.de>
This is a re-admission after prior archival of version 0.1.6 dated 2022-02-23
Diff between mrf versions 0.1.6 dated 2022-02-23 and 0.1.9 dated 2026-04-16
DESCRIPTION | 21 - MD5 | 25 + NAMESPACE | 10 R/mrf_evaluation.R | 2 R/mrf_regression_lsm_optimization.R | 34 +- R/mrf_regression_one_step_forecast.R | 10 R/mrf_rolling_forecasting_origin.R | 11 R/wavelet_decomposition.R | 7 R/wavelet_prediction_equation.R | 2 R/wavelet_tansformation.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/mrf.R | 70 ++--- inst/doc/mrf.html | 446 ++++++++++++++++++++++++++--------- 14 files changed, 449 insertions(+), 189 deletions(-)
Title: Data Structures for Brain Imaging Data
Description: A collection of data structures and methods for handling volumetric
brain imaging data, with a focus on functional magnetic resonance imaging (fMRI). Provides efficient
representations for three-dimensional and four-dimensional neuroimaging data through sparse and dense array
implementations, memory-mapped file access for large datasets, and
spatial transformation capabilities. Implements methods for image resampling,
spatial filtering, region of interest analysis, and connected component labeling. General introduction
to fMRI analysis can be found in Poldrack et al. (2024, "Handbook of functional MRI data analysis",
<ISBN:9781108795760>).
Author: Bradley R Buchsbaum [aut, cre, cph]
Maintainer: Bradley R Buchsbaum <brad.buchsbaum@gmail.com>
Diff between neuroim2 versions 0.8.5 dated 2026-01-14 and 0.13.0 dated 2026-04-16
neuroim2-0.13.0/neuroim2/DESCRIPTION | 38 neuroim2-0.13.0/neuroim2/MD5 | 353 +- neuroim2-0.13.0/neuroim2/NAMESPACE | 55 neuroim2-0.13.0/neuroim2/NEWS.md | 100 neuroim2-0.13.0/neuroim2/R/affine_utils.R |only neuroim2-0.13.0/neuroim2/R/all_class.R | 50 neuroim2-0.13.0/neuroim2/R/all_generic.R | 58 neuroim2-0.13.0/neuroim2/R/array_like.R | 4 neuroim2-0.13.0/neuroim2/R/axis.R | 655 +++-- neuroim2-0.13.0/neuroim2/R/big_neurovec.R | 8 neuroim2-0.13.0/neuroim2/R/binary_io.R | 93 neuroim2-0.13.0/neuroim2/R/clustered_neurovec.R | 109 neuroim2-0.13.0/neuroim2/R/clustervol.R | 150 - neuroim2-0.13.0/neuroim2/R/common.R | 290 +- neuroim2-0.13.0/neuroim2/R/conncomp.R | 11 neuroim2-0.13.0/neuroim2/R/deoblique.R |only neuroim2-0.13.0/neuroim2/R/downsample.R | 145 + neuroim2-0.13.0/neuroim2/R/file_format.R | 11 neuroim2-0.13.0/neuroim2/R/filebacked_neurovec.R | 50 neuroim2-0.13.0/neuroim2/R/globals.R | 2 neuroim2-0.13.0/neuroim2/R/header_api.R |only neuroim2-0.13.0/neuroim2/R/index_vol.R | 66 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Title: Statistical Tools for the Analysis of Multi Environment
Agronomic Trials
Description: Data from multi environment agronomic trials, which are often
carried out by plant breeders, can be analyzed with the tools offered by this
package such as the Additive Main effects and Multiplicative Interaction model
or 'AMMI' ('Gauch' 1992, ISBN:9780444892409)
and the Site Regression model or 'SREG' ('Cornelius' 1996,
<doi:10.1201/9780367802226>). Since these methods present a poor performance
under the presence of outliers and missing values, this package includes
robust versions of the 'AMMI' model ('Rodrigues' 2016,
<doi:10.1093/bioinformatics/btv533>), and also imputation techniques
specifically developed for this kind of data ('Arciniegas-Alarcón' 2014,
<doi:10.2478/bile-2014-0006>).
Author: Julia Angelini [aut, cre] ,
Marcos Prunello [aut] ,
Gerardo Cervigni [aut]
Maintainer: Julia Angelini <jangelini_93@hotmail.com>
Diff between geneticae versions 0.4.0 dated 2022-07-20 and 1.0.0 dated 2026-04-16
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Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Winston Chang [aut],
Jennifer Bryan [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between devtools versions 2.5.0 dated 2026-03-14 and 2.5.1 dated 2026-04-16
DESCRIPTION | 16 +-- MD5 | 24 ++--- NEWS.md | 10 ++ R/build-readme.R | 14 ++- R/install.R | 41 +++++++++ R/release.R | 2 R/sitrep.R | 140 ++++++++++++++++++++++++---------- R/test.R | 2 inst/doc/dependencies.html | 3 tests/testthat/_snaps/build-readme.md | 10 ++ tests/testthat/_snaps/sitrep.md | 55 ++++++++++--- tests/testthat/test-build-readme.R | 24 +++++ tests/testthat/test-sitrep.R | 131 +++++++++++++++++++++++++------ 13 files changed, 362 insertions(+), 110 deletions(-)
Title: Integration Unit Tests for Pharmacoepidemiological Studies
Description: An R interface to load testing data in the 'OMOP' Common Data Model ('CDM'). An input file, csv or xlsx, can be converted to a 'CDMConnector' object. This object can be used to execute and test studies that use the 'CDM' <https://www.ohdsi.org/data-standardization/>.
Author: Cesar Barboza [aut] ,
Ioanna Nika [aut],
Ger Inberg [aut, cre] ,
Adam Black [aut]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between TestGenerator versions 0.5.0 dated 2026-01-14 and 0.6.0 dated 2026-04-16
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Title: Fairness Evaluation Metrics with Confidence Intervals for Binary
Protected Attributes
Description: A collection of functions for computing fairness metrics for machine learning and statistical models, including confidence intervals for each metric. The package supports the evaluation of group-level fairness criterion commonly used in fairness research, particularly in healthcare for binary protected attributes. It is based on the overview of fairness in machine learning written by Gao et al (2025) <doi:10.1002/sim.70234>.
Author: Jianhui Gao [aut] ,
Benjamin Smith [aut, cre] ,
Benson Chou [aut] ,
Jessica Gronsbell [aut]
Maintainer: Benjamin Smith <benyamin.smith@mail.utoronto.ca>
Diff between fairmetrics versions 1.0.7 dated 2025-10-06 and 1.0.8 dated 2026-04-16
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/CITATION | 24 ++++++++++++++++-------- inst/doc/fairmetrics.html | 5 +++-- 4 files changed, 26 insertions(+), 17 deletions(-)
Title: Loading Data from 'Google Ads API'
Description: Interface for loading data from 'Google Ads API',
see <https://developers.google.com/google-ads/api/docs/start>.
Package provide function for authorization and loading reports.
Author: Alexey Seleznev [aut, cre] ,
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rgoogleads versions 0.13.3 dated 2025-09-03 and 0.14.1 dated 2026-04-16
DESCRIPTION | 6 MD5 | 60 +- NAMESPACE | 104 ++-- NEWS.md | 9 R/gads_auth.R | 830 ++++++++++++++++----------------- R/gads_check_errors.R | 208 ++++---- R/gads_get_accessible_customers.R | 112 ++-- R/gads_get_ad_group_criterions.R | 274 +++++----- R/gads_get_ad_groups.R | 4 R/gads_get_ads.R | 276 +++++----- R/gads_get_campaigns.R | 194 +++---- R/gads_get_geo_targets.R | 100 +-- R/gads_get_keywords.R | 4 R/gads_get_report.R | 10 R/gads_utils.R | 282 +++++------ R/rgoogleads_package.R | 2 R/zzz.R | 226 ++++---- README.md | 4 inst/doc/migrate_from_radrowds_us.Rmd | 320 ++++++------ inst/doc/migrate_from_radrowds_us.html | 20 inst/doc/migrate_from_radwords_ru.Rmd | 318 ++++++------ inst/doc/migrate_from_radwords_ru.html | 17 man/gads_get_ad_group_criterions.Rd | 4 man/gads_get_ad_groups.Rd | 4 man/gads_get_ads.Rd | 57 -- man/gads_get_campaigns.Rd | 9 man/gads_get_keywords.Rd | 4 man/gads_get_report.Rd | 10 man/rgoogleads-package.Rd | 2 vignettes/migrate_from_radrowds_us.Rmd | 320 ++++++------ vignettes/migrate_from_radwords_ru.Rmd | 318 ++++++------ 31 files changed, 2046 insertions(+), 2062 deletions(-)
Title: Assessing Package Test Reliability and Quality
Description: A reliable and validated tool that calculates unit test coverage for R packages with standard testing frameworks and non-standard testing frameworks.
Author: Edward Gillian [cre, aut] ,
Hugo Bottois [aut] ,
Paulin Charliquart [aut],
Andre Couturier [aut],
Sanofi [cph, fnd]
Maintainer: Edward Gillian <edward.gillian-ext@sanofi.com>
Diff between test.assessr versions 1.1.1 dated 2026-03-02 and 2.0.0 dated 2026-04-16
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Title: Create a Mini Version of CRAN Containing Only Selected Packages
Description: Makes it possible to create an internally consistent
repository consisting of selected packages from CRAN-like repositories.
The user specifies a set of desired packages, and 'miniCRAN' recursively
reads the dependency tree for these packages, then downloads only this
subset. The user can then install packages from this repository directly,
rather than from CRAN. This is useful in production settings, e.g. server
behind a firewall, or remote locations with slow (or zero) Internet access.
Author: Andrie de Vries [aut, cre, cph],
Alex Chubaty [ctb],
Microsoft Corporation [cph]
Maintainer: Andrie de Vries <apdevries@gmail.com>
Diff between miniCRAN versions 0.3.1 dated 2025-04-23 and 0.3.2 dated 2026-04-16
DESCRIPTION | 6 ++--- MD5 | 16 +++++++-------- NEWS | 5 ++++ R/github-functions.R | 34 +++++++++++++++++--------------- build/vignette.rds |binary inst/doc/miniCRAN-dependency-graph.html | 8 +++---- inst/doc/miniCRAN-introduction.html | 4 +-- inst/doc/miniCRAN-non-CRAN-repos.html | 4 +-- tests/testthat/test-1-pkgAvail.R | 8 ++----- 9 files changed, 46 insertions(+), 39 deletions(-)
Title: Probabilistic Reconciliation via Conditioning
Description: Provides methods for probabilistic reconciliation of hierarchical forecasts of time series.
The available methods include analytical Gaussian reconciliation (Corani et al., 2021)
<doi:10.1007/978-3-030-67664-3_13>,
MCMC reconciliation of count time series (Corani et al., 2024)
<doi:10.1016/j.ijforecast.2023.04.003>,
Bottom-Up Importance Sampling (Zambon et al., 2024)
<doi:10.1007/s11222-023-10343-y>,
methods for the reconciliation of mixed hierarchies (Mix-Cond and TD-cond) (Zambon et al., 2024)
<https://proceedings.mlr.press/v244/zambon24a.html>,
analytical reconciliation with Bayesian treatment of the covariance matrix (Carrara et al., 2025)
<doi: 10.48550/arXiv.2506.19554>.
Author: Dario Azzimonti [aut, cre] ,
Lorenzo Zambon [aut] ,
Stefano Damato [aut] ,
Nicolo Rubattu [aut] ,
Giorgio Corani [aut]
Maintainer: Dario Azzimonti <dario.azzimonti@gmail.com>
Diff between bayesRecon versions 1.0.0 dated 2026-03-07 and 1.0.1 dated 2026-04-16
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More information about CohortContrast at CRAN
Permanent link
Title: Search Algorithms and Loss Functions for Bayesian Clustering
Description: The SALSO algorithm is an efficient randomized greedy search method to find a point estimate for a random partition based on a loss function and posterior Monte Carlo samples. The algorithm is implemented for many loss functions, including the Binder loss and a generalization of the variation of information loss, both of which allow for unequal weights on the two types of clustering mistakes. Efficient implementations are also provided for Monte Carlo estimation of the posterior expected loss of a given clustering estimate. See Dahl, Johnson, Müller (2022) <doi:10.1080/10618600.2022.2069779>.
Author: David B. Dahl [aut, cre] ,
Devin J. Johnson [aut] ,
Peter Mueller [aut],
Andres Felipe Barrientos [aut],
Garritt Page [aut],
David Dunson [aut],
Authors of the dependency Rust crates [ctb]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between salso versions 0.3.77 dated 2026-04-12 and 0.3.78 dated 2026-04-16
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 3 +++ src/rust/Cargo.lock | 39 +++++++++++++++++++++------------------ src/rust/Cargo.toml | 13 +++++++------ src/rust/rbindings/Cargo.toml | 2 +- src/rust/roxido/Cargo.toml | 2 +- src/rust/roxido_macro/Cargo.toml | 2 +- src/rust/vendor.tar.xz |binary 9 files changed, 46 insertions(+), 39 deletions(-)
Title: Management Strategy Evaluation for Salmon Species
Description: Simulation tools to evaluate the long-term effects of salmon management strategies, including a combination of habitat, harvest, and
habitat actions. The stochastic age-structured operating model accommodates complex life histories, including freshwater survival across
early life stages, juvenile survival and fishery exploitation in the marine life stage, partial maturity by age class, and fitness impacts of
hatchery programs on natural spawning populations. 'salmonMSE' also provides an age-structured conditioning model to develop operating models
fitted to data.
Author: Quang Huynh [aut, cre]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between salmonMSE versions 1.0.0 dated 2026-03-20 and 2.0.0 dated 2026-04-16
DESCRIPTION | 8 MD5 | 76 +- NAMESPACE | 2 NEWS.md | 9 R/AHA_int.R | 4 R/CM.R | 676 +++++++++---------- R/CM_int.R | 1 R/CMfun.R | 8 R/MMSE2SMSE.R | 59 + R/Rel.R | 74 +- R/SOM2MOM.R | 1599 ++++++++++++++++++++++----------------------- R/SOM2MOM_int.R | 2 R/SRR.R | 28 R/data_obj.R |only R/define-SOM.R | 24 R/hatchery.R | 9 R/plot-SOM.R | 374 +++++----- R/plot-statevar.R | 237 ++++++ R/ref.R | 674 +++++++++--------- R/rmd_SMSE.R | 4 R/salmonMSE.R | 78 ++ build/partial.rdb |binary data/glossary.rda |binary data/multi_SOM.rda |only data/simple_SOM.rda |only man/Bio-class.Rd | 24 man/Harvest-class.Rd | 2 man/Hatchery-class.Rd | 10 man/SMSE-class.Rd | 7 man/SOM-class.Rd | 8 man/calc_SRR.Rd | 14 man/calc_SRRpars.Rd | 9 man/calc_Smsy_Ricker.Rd | 9 man/calc_pwild_age.Rd | 4 man/calc_ref.Rd | 5 man/calc_smolt.Rd | 5 man/check_SOM.Rd | 4 man/plot_decision_table.Rd | 88 ++ man/plot_tradeoff.Rd | 62 + man/salmonMSE.Rd | 6 man/simple_SOM.Rd |only 41 files changed, 2425 insertions(+), 1778 deletions(-)
Title: Regression Estimation and Presentation
Description: A collection of functions for interpretation and presentation
of regression analysis. These functions are used
to produce the statistics lectures in
<https://pj.freefaculty.org/guides/>. Includes regression
diagnostics, regression tables, and plots of interactions and
"moderator" variables. The emphasis is on "mean-centered" and
"residual-centered" predictors. The vignette 'rockchalk' offers a
fairly comprehensive overview. The vignette 'Rstyle' has advice
about coding in R. The package title 'rockchalk' refers to our
school motto, 'Rock Chalk Jayhawk, Go K.U.'.
Author: Paul E. Johnson [aut, cre],
Gabor Grothendieck [ctb],
Dimitri Papadopoulos OrfanosGabor [ctb]
Maintainer: Paul E. Johnson <pauljohn32@freefaculty.org>
Diff between rockchalk versions 1.8.157 dated 2022-08-06 and 1.8.164 dated 2026-04-16
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Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.2.1 dated 2026-04-12 and 1.2.2 dated 2026-04-16
renv-1.2.1/renv/inst/repos/src/contrib/renv_1.2.1.tar.gz |only renv-1.2.2/renv/DESCRIPTION | 6 renv-1.2.2/renv/MD5 | 62 +-- renv-1.2.2/renv/NEWS.md | 13 renv-1.2.2/renv/R/graph.R | 256 +++++++-------- renv-1.2.2/renv/R/install.R | 14 renv-1.2.2/renv/R/project.R | 8 renv-1.2.2/renv/R/roxygen.R | 16 renv-1.2.2/renv/build/vignette.rds |binary renv-1.2.2/renv/inst/doc/faq.Rmd | 2 renv-1.2.2/renv/inst/doc/faq.html | 2 renv-1.2.2/renv/inst/doc/package-install.Rmd | 2 renv-1.2.2/renv/inst/doc/package-install.html | 2 renv-1.2.2/renv/inst/doc/rsconnect.Rmd | 2 renv-1.2.2/renv/inst/doc/rsconnect.html | 2 renv-1.2.2/renv/inst/repos/src/contrib/PACKAGES | 4 renv-1.2.2/renv/inst/repos/src/contrib/PACKAGES.gz |binary renv-1.2.2/renv/inst/repos/src/contrib/PACKAGES.rds |binary renv-1.2.2/renv/inst/repos/src/contrib/renv_1.2.2.tar.gz |only renv-1.2.2/renv/man/install.Rd | 28 + renv-1.2.2/renv/man/retrieve.Rd | 15 renv-1.2.2/renv/tests/testthat/_snaps/sysreqs.md | 2 renv-1.2.2/renv/tests/testthat/helper-scope.R | 5 renv-1.2.2/renv/tests/testthat/helper-setup.R | 58 +++ renv-1.2.2/renv/tests/testthat/test-available-packages.R | 4 renv-1.2.2/renv/tests/testthat/test-cache.R | 13 renv-1.2.2/renv/tests/testthat/test-checkout.R | 10 renv-1.2.2/renv/tests/testthat/test-graph.R | 47 ++ renv-1.2.2/renv/tests/testthat/test-install.R | 22 + renv-1.2.2/renv/tests/testthat/test-sysreqs.R | 6 renv-1.2.2/renv/vignettes/faq.Rmd | 2 renv-1.2.2/renv/vignettes/package-install.Rmd | 2 renv-1.2.2/renv/vignettes/rsconnect.Rmd | 2 33 files changed, 397 insertions(+), 210 deletions(-)
Title: Reliability Growth Analysis and Repairable Systems Modeling
Description: Modeling and plotting functions for Reliability Growth Analysis (RGA) and Non-Homogeneous Poisson Process (NHPP) models for repairable systems. RGA models include the Duane (1962) <doi:10.1109/TA.1964.4319640>, NHPP by Crow (1975) (No. AMSAATR138), Piecewise Weibull NHPP by Guo et al. (2010) <doi:10.1109/RAMS.2010.5448029>, and Piecewise Weibull NHPP with Change Point Detection based on the 'segmented' package by Muggeo (2024) <https://cran.r-project.org/package=segmented>. Repairable systems functions include the Mean Cumulative Function (MCF) using the Nelson-Aalen estimator, parametric Power Law and Log-Linear NHPP models, and forecasting.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaGrowR versions 0.4 dated 2026-03-31 and 0.6 dated 2026-04-16
ReliaGrowR-0.4/ReliaGrowR/inst/paper |only ReliaGrowR-0.6/ReliaGrowR/DESCRIPTION | 12 ReliaGrowR-0.6/ReliaGrowR/MD5 | 73 ++-- ReliaGrowR-0.6/ReliaGrowR/NAMESPACE | 19 + ReliaGrowR-0.6/ReliaGrowR/NEWS.md | 15 ReliaGrowR-0.6/ReliaGrowR/R/exposure.R |only ReliaGrowR-0.6/ReliaGrowR/R/mcf.R |only ReliaGrowR-0.6/ReliaGrowR/R/nhpp.R |only ReliaGrowR-0.6/ReliaGrowR/R/rga.R | 180 +++++++++++ ReliaGrowR-0.6/ReliaGrowR/README.md | 30 + ReliaGrowR-0.6/ReliaGrowR/build/vignette.rds |binary ReliaGrowR-0.6/ReliaGrowR/inst/WORDLIST | 19 + ReliaGrowR-0.6/ReliaGrowR/inst/doc/RGF.R | 34 -- ReliaGrowR-0.6/ReliaGrowR/inst/doc/RGF.Rmd | 34 -- ReliaGrowR-0.6/ReliaGrowR/inst/doc/RGF.html | 36 -- ReliaGrowR-0.6/ReliaGrowR/inst/doc/RSA.R |only ReliaGrowR-0.6/ReliaGrowR/inst/doc/RSA.Rmd |only ReliaGrowR-0.6/ReliaGrowR/inst/doc/RSA.html |only ReliaGrowR-0.6/ReliaGrowR/inst/hex_sticker.R |only ReliaGrowR-0.6/ReliaGrowR/man/exposure.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/figures/logo.png |only ReliaGrowR-0.6/ReliaGrowR/man/mcf.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/nhpp.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/overlay_nhpp.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/overlay_rga.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/plot.exposure.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/plot.mcf.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/plot.nhpp.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/plot.nhpp_predict.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/plot.rga.Rd | 1 ReliaGrowR-0.6/ReliaGrowR/man/plot.rga_predict.Rd | 1 ReliaGrowR-0.6/ReliaGrowR/man/predict_nhpp.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/predict_rga.Rd | 1 ReliaGrowR-0.6/ReliaGrowR/man/print.exposure.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/print.mcf.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/print.nhpp.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/print.nhpp_predict.Rd |only ReliaGrowR-0.6/ReliaGrowR/man/print.rga.Rd | 1 ReliaGrowR-0.6/ReliaGrowR/man/print.rga_predict.Rd | 1 ReliaGrowR-0.6/ReliaGrowR/man/rga.Rd | 1 ReliaGrowR-0.6/ReliaGrowR/tests/testthat/Rplots.pdf |binary ReliaGrowR-0.6/ReliaGrowR/tests/testthat/test-srr-duane.R | 3 ReliaGrowR-0.6/ReliaGrowR/tests/testthat/test-srr-exposure.R |only ReliaGrowR-0.6/ReliaGrowR/tests/testthat/test-srr-mcf.R |only ReliaGrowR-0.6/ReliaGrowR/tests/testthat/test-srr-nhpp.R |only ReliaGrowR-0.6/ReliaGrowR/tests/testthat/test-srr-rga.R | 112 ++++++ ReliaGrowR-0.6/ReliaGrowR/tests/testthat/test-srr-testdata.R | 2 ReliaGrowR-0.6/ReliaGrowR/vignettes/RGF.Rmd | 34 -- ReliaGrowR-0.6/ReliaGrowR/vignettes/RSA.Rmd |only 49 files changed, 430 insertions(+), 179 deletions(-)
Title: Spatial Phylogenetic Analysis
Description: Analyze spatial phylogenetic diversity patterns.
Use your data on an evolutionary tree and geographic distributions of the
terminal taxa to compute diversity and endemism metrics, test significance
with null model randomization, analyze community turnover and biotic
regionalization, and perform spatial conservation prioritizations. All
functions support quantitative community data in addition to binary data.
Author: Matthew Kling [aut, cre, cph]
Maintainer: Matthew Kling <mattkling@berkeley.edu>
Diff between phylospatial versions 1.3.0 dated 2026-04-03 and 1.4.0 dated 2026-04-16
DESCRIPTION | 10 +- MD5 | 54 ++++++++------ NAMESPACE | 3 NEWS.md | 12 +++ R/phylospatial.R | 11 ++- R/ps_grid.R |only R/ps_quantize.R | 31 ++++++-- R/ps_rand.R | 101 ++++++++++++++++++++++----- R/ps_trace.R |only inst/doc/alpha-diversity.R | 31 +++++++- inst/doc/alpha-diversity.Rmd | 51 ++++++++++++- inst/doc/alpha-diversity.html | 124 ++++++++++++++++++++++++++-------- inst/doc/beta-diversity.R | 28 +++++++ inst/doc/beta-diversity.Rmd | 39 +++++++++- inst/doc/beta-diversity.html | 116 ++++++++++++++++++++++--------- inst/doc/phylospatial-data.R | 17 ++++ inst/doc/phylospatial-data.Rmd | 26 +++++++ inst/doc/phylospatial-data.html | 65 +++++++++++++++-- inst/extdata/alpha-diversity-rand.tif |binary man/phylospatial.Rd | 8 ++ man/ps_grid.Rd |only man/ps_quantize.Rd | 27 ++++++- man/ps_rand.Rd | 61 ++++++++++++---- man/ps_suggest_n_iter.Rd |only man/ps_trace.Rd |only tests/testthat/test-ps_grid.R |only tests/testthat/test-ps_quantize.R | 11 +++ tests/testthat/test-ps_rand.R | 45 +++++++++++- vignettes/alpha-diversity.Rmd | 51 ++++++++++++- vignettes/beta-diversity.Rmd | 39 +++++++++- vignettes/phylospatial-data.Rmd | 26 +++++++ 31 files changed, 814 insertions(+), 173 deletions(-)
Title: Spline-Based Nonlinear Modeling for Multilevel and Longitudinal
Data
Description: Provides a unified framework for fitting, predicting, and
interpreting nonlinear relationships in single-level, multilevel, and
longitudinal regression models. Flexible functional forms are supported
using natural cubic splines ('splines'), B-splines ('splines'), and GAM
smooths ('mgcv'). Supports two-way and nested clustering via 'lme4',
automatic knot selection by AIC or BIC, multilevel R-squared
decomposition (Nakagawa-Schielzeth marginal and conditional R-squared
with level-specific variance partitioning), a postestimation suite
returning first and second derivatives with confidence bands, turning
points and inflection regions, and a model comparison workflow
contrasting linear, polynomial, and spline fits by AIC, BIC, and
likelihood-ratio tests. Cluster heterogeneity in nonlinear effects is
supported via random-slope spline terms.
Author: Subir Hait [aut, cre]
Maintainer: Subir Hait <haitsubi@msu.edu>
Diff between MultiSpline versions 0.1.1 dated 2026-03-16 and 0.2.0 dated 2026-04-16
MultiSpline-0.1.1/MultiSpline/LICENSE |only MultiSpline-0.1.1/MultiSpline/tests |only MultiSpline-0.2.0/MultiSpline/DESCRIPTION | 55 - MultiSpline-0.2.0/MultiSpline/MD5 | 47 MultiSpline-0.2.0/MultiSpline/NAMESPACE | 34 MultiSpline-0.2.0/MultiSpline/NEWS.md | 79 + MultiSpline-0.2.0/MultiSpline/R/nl_compare.R |only MultiSpline-0.2.0/MultiSpline/R/nl_derivatives.R |only MultiSpline-0.2.0/MultiSpline/R/nl_fit.R | 802 ++++++++--------- MultiSpline-0.2.0/MultiSpline/R/nl_het.R |only MultiSpline-0.2.0/MultiSpline/R/nl_icc.R | 294 ++---- MultiSpline-0.2.0/MultiSpline/R/nl_knots.R |only MultiSpline-0.2.0/MultiSpline/R/nl_methods.R | 24 MultiSpline-0.2.0/MultiSpline/R/nl_plot.R | 469 ++++----- MultiSpline-0.2.0/MultiSpline/R/nl_predict.R | 631 ++++++------- MultiSpline-0.2.0/MultiSpline/R/nl_r2.R |only MultiSpline-0.2.0/MultiSpline/R/nl_summary.R | 84 - MultiSpline-0.2.0/MultiSpline/R/utils.R | 22 MultiSpline-0.2.0/MultiSpline/README.md | 383 ++++++-- MultiSpline-0.2.0/MultiSpline/inst |only MultiSpline-0.2.0/MultiSpline/man/nl_compare.Rd |only MultiSpline-0.2.0/MultiSpline/man/nl_derivatives.Rd |only MultiSpline-0.2.0/MultiSpline/man/nl_fit.Rd | 180 +-- MultiSpline-0.2.0/MultiSpline/man/nl_het.Rd |only MultiSpline-0.2.0/MultiSpline/man/nl_icc.Rd | 39 MultiSpline-0.2.0/MultiSpline/man/nl_knots.Rd |only MultiSpline-0.2.0/MultiSpline/man/nl_plot.Rd | 122 -- MultiSpline-0.2.0/MultiSpline/man/nl_predict.Rd | 100 -- MultiSpline-0.2.0/MultiSpline/man/nl_r2.Rd |only MultiSpline-0.2.0/MultiSpline/man/nl_summary.Rd | 37 MultiSpline-0.2.0/MultiSpline/man/nl_turning_points.Rd |only 31 files changed, 1706 insertions(+), 1696 deletions(-)
Title: Models of Trait Macroevolution on Trees
Description: Functions for fitting models of trait evolution
on phylogenies for continuous traits. The majority of functions are
described in Thomas and Freckleton (2012)
<doi:10.1111/j.2041-210X.2011.00132.x> and allow tests of variation
in the rates of trait evolution.
Author: Mark Puttick [aut, cph] ,
Gavin Thomas [aut, cph],
Rob Freckleton [aut, cph],
Magnus Clarke [ctb],
Travis Ingram [ctb],
David Orme [ctb],
Emmanuel Paradis [ctb],
Martin R. Smith [ctb, cre]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
This is a re-admission after prior archival of version 2.1.3 dated 2019-11-25
Diff between motmot versions 2.1.3 dated 2019-11-25 and 2.1.4 dated 2026-04-16
motmot-2.1.3/motmot/R/RData_mammals.R |only motmot-2.1.3/motmot/R/motmot-package.R |only motmot-2.1.3/motmot/data/mammals.rda |only motmot-2.1.3/motmot/inst/doc/motmot.R |only motmot-2.1.3/motmot/inst/doc/motmot.Rmd |only motmot-2.1.3/motmot/inst/doc/motmot.html |only motmot-2.1.3/motmot/man/mammals.Rd |only motmot-2.1.3/motmot/vignettes/motmot.Rmd |only motmot-2.1.4/motmot/DESCRIPTION | 59 +++++++++++---- motmot-2.1.4/motmot/MD5 | 86 ++++++++++++---------- motmot-2.1.4/motmot/NAMESPACE | 1 motmot-2.1.4/motmot/NEWS.md |only motmot-2.1.4/motmot/R/ML.RatePhylo.R | 34 ++++---- motmot-2.1.4/motmot/R/RData_finch_sympatric.R |only motmot-2.1.4/motmot/R/chr.displacement_fun.R | 20 ++--- motmot-2.1.4/motmot/R/mcmc.plot.R | 2 motmot-2.1.4/motmot/R/package-motmot.R |only motmot-2.1.4/motmot/R/plot.timeSlice.ML.R | 4 - motmot-2.1.4/motmot/R/plot.traitMedusa.model.R | 4 - motmot-2.1.4/motmot/R/sortTraitData.R | 2 motmot-2.1.4/motmot/R/summary.traitMedusa.R | 2 motmot-2.1.4/motmot/R/supplementary_fun.R | 16 ++-- motmot-2.1.4/motmot/R/transformPhylo.MCMC.R | 14 +-- motmot-2.1.4/motmot/R/transformPhylo.ML.R | 38 ++++----- motmot-2.1.4/motmot/R/transformPhylo.R | 26 +++--- motmot-2.1.4/motmot/R/transformPhylo.ll.R | 32 +++----- motmot-2.1.4/motmot/README.md |only motmot-2.1.4/motmot/build/partial.rdb |only motmot-2.1.4/motmot/build/vignette.rds |binary motmot-2.1.4/motmot/data/finches.rda |binary motmot-2.1.4/motmot/inst/doc/motmot.vignette.R |only motmot-2.1.4/motmot/inst/doc/motmot.vignette.Rmd |only motmot-2.1.4/motmot/inst/doc/motmot.vignette.html |only motmot-2.1.4/motmot/man/ML.RatePhylo.Rd | 34 ++++---- motmot-2.1.4/motmot/man/allopatric.data.Rd | 4 - motmot-2.1.4/motmot/man/anolis.data.Rd | 4 - motmot-2.1.4/motmot/man/anolis.tree.Rd | 4 - motmot-2.1.4/motmot/man/finch.data.Rd | 4 - motmot-2.1.4/motmot/man/finch.tree.Rd | 4 - motmot-2.1.4/motmot/man/motmot-package.Rd | 19 ++++ motmot-2.1.4/motmot/man/sympatric.data.Rd |only motmot-2.1.4/motmot/man/transformPhylo.MCMC.Rd | 14 +-- motmot-2.1.4/motmot/man/transformPhylo.ML.Rd | 35 ++++---- motmot-2.1.4/motmot/man/transformPhylo.Rd | 26 +++--- motmot-2.1.4/motmot/man/transformPhylo.ll.Rd | 32 +++----- motmot-2.1.4/motmot/src/packagename_init.c | 4 - motmot-2.1.4/motmot/vignettes/figures |only motmot-2.1.4/motmot/vignettes/motmot.vignette.Rmd |only 48 files changed, 289 insertions(+), 235 deletions(-)
Title: Estimates Degrees of Relatedness (Up to the Second Degree) for
Extreme Low-Coverage Data
Description: The goal of the package is to provide an easy-to-use method
for estimating degrees of relatedness (up to the second degree)
for extreme low-coverage data. The package also allows users to
quantify and visualise the level of confidence in the estimated
degrees of relatedness.
Author: Jono Tuke [aut, cre] ,
Adam B. Rohrlach [aut] ,
Wolfgang Haak [aut] ,
Divyaratan Popli [aut]
Maintainer: Jono Tuke <simon.tuke@adelaide.edu.au>
Diff between BREADR versions 1.0.3 dated 2025-04-14 and 1.1.0 dated 2026-04-16
DESCRIPTION | 25 - MD5 | 47 +-- NAMESPACE | 2 NEWS.md | 10 R/callRelatedness.R | 169 ++++++++---- R/plotDOUGH.R |only R/plotLOAF.R | 146 +++++++--- R/plotSLICE.R | 229 +++++++++++------ R/priorSensitivity.R |only R/processEigenstrat.R | 346 ++++++++++++++++--------- R/saveSLICES.R | 82 ++++-- R/test_degree.R | 92 ++++-- README.md | 2 build/vignette.rds |binary inst/CITATION | 20 - inst/WORDLIST | 20 + inst/doc/example-pipeline.R | 55 +++- inst/doc/example-pipeline.Rmd | 151 +++++++++-- inst/doc/example-pipeline.html | 453 +++++++++++++++++++++++++++++----- inst/extdata/example2.ind.txt |only man/plotDOUGH.Rd |only man/plotSLICE.Rd | 2 man/priorSensitivity.Rd |only man/processEigenstrat.Rd | 14 - man/saveSLICES.Rd | 2 tests/testthat/test-callRelatedness.R | 2 vignettes/example-pipeline.Rmd | 151 +++++++++-- 27 files changed, 1515 insertions(+), 505 deletions(-)
Title: Bayesian Latent Variable Models
Description: Estimation of latent variable models using Bayesian methods. Currently estimates the loglinear cognitive diagnosis model of Henson, Templin, and Willse (2009) <doi:10.1007/s11336-008-9089-5>.
Author: Jonathan Templin [aut, cre]
Maintainer: Jonathan Templin <jtempli@clemson.edu>
Diff between blatent versions 0.1.2 dated 2023-12-08 and 0.1.3 dated 2026-04-16
DESCRIPTION | 15 ++++++++------- MD5 | 5 +++-- NEWS.md |only src/RcppExports.cpp | 4 ++-- 4 files changed, 13 insertions(+), 11 deletions(-)
Title: Biological Geometries
Description: Is used to simulate and fit biological geometries. 'biogeom' incorporates several novel universal parametric equations that can generate the profiles of bird eggs, flowers, linear and lanceolate leaves, seeds, starfish, and tree-rings (Gielis (2003) <doi:10.3732/ajb.90.3.333>; Shi et al. (2020) <doi:10.3390/sym12040645>), three growth-rate curves representing the ontogenetic growth trajectories of animals and plants against time, and the axially symmetrical and integral forms of all these functions (Shi et al. (2017) <doi:10.1016/j.ecolmodel.2017.01.012>; Shi et al. (2021) <doi:10.3390/sym13081524>). The optimization method proposed by Nelder and Mead (1965) <doi:10.1093/comjnl/7.4.308> was used to estimate model parameters. 'biogeom' includes several real data sets of the boundary coordinates of natural shapes, including avian eggs, fruit, lanceolate and ovate leaves, tree rings, seeds, and sea stars,and can be potentially applied to other natural shapes. [...truncated...]
Author: Peijian Shi [aut, cre],
Johan Gielis [aut],
Brady K. Quinn [aut]
Maintainer: Peijian Shi <pjshi@njfu.edu.cn>
Diff between biogeom versions 1.5.0 dated 2025-08-24 and 1.5.1 dated 2026-04-16
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/PlanCoor.R | 6 +++--- build/partial.rdb |binary man/PlanCoor.Rd | 10 +++++++--- man/SAMs.Rd | 13 +++++++------ man/SurfaceAreaAM.Rd | 4 ++++ man/VolumeAM.Rd | 6 +++++- man/fitAM.Rd | 19 ++++++++++--------- 9 files changed, 48 insertions(+), 34 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-19 0.1.0
Title: Implements the Leiden Algorithm via an R Interface
Description: An R interface to the Leiden algorithm, an iterative community detection algorithm on networks. The algorithm is designed to converge to a partition in which all subsets of all communities are locally optimally assigned, yielding communities guaranteed to be connected. The implementation proves to be fast, scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The original implementation was constructed as a python interface "leidenalg" found here: <https://github.com/vtraag/leidenalg>. The algorithm was originally described in Traag, V.A., Waltman, L. & van Eck, N.J. "From Louvain to Leiden: guaranteeing well-connected communities". Sci Rep 9, 5233 (2019) <doi:10.1038/s41598-019-41695-z>.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
Yichen Wang [aut],
V.A. Traag [ctb],
Gabor Csardi [ctb],
Tamas Nepusz [ctb],
Minh Van Nguyen [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between leidenAlg versions 1.1.6-1 dated 2026-04-15 and 1.1.7 dated 2026-04-16
leidenAlg-1.1.6-1/leidenAlg/src/rigraph/lazyeval.c |only leidenAlg-1.1.7/leidenAlg/DESCRIPTION | 6 - leidenAlg-1.1.7/leidenAlg/MD5 |only leidenAlg-1.1.7/leidenAlg/README.md | 2 leidenAlg-1.1.7/leidenAlg/src/rigraph/Makefile | 2 leidenAlg-1.1.7/leidenAlg/src/rigraph/Makefile.win | 2 leidenAlg-1.1.7/leidenAlg/src/rigraph/rinterface.c | 32 ++++++++ leidenAlg-1.1.7/leidenAlg/src/rigraph/rinterface_extra.c | 57 +++++++++++++-- 8 files changed, 89 insertions(+), 12 deletions(-)
Title: Engression Modelling
Description: Fits engression models for nonlinear distributional regression. Predictors and targets can be univariate or multivariate. Functionality includes estimation of conditional mean, estimation of conditional quantiles, or sampling from the fitted distribution. Training is done full-batch on CPU (the python version offers GPU-accelerated stochastic gradient descent). Based on "Engression: Extrapolation through the lens of distributional regression" by Xinwei Shen and Nicolai Meinshausen (2024) in JRSSB. Also supports classification (experimental).
<doi:10.1093/jrsssb/qkae108>.
Author: Xinwei Shen [aut],
Nicolai Meinshausen [aut, cre]
Maintainer: Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>
Diff between engression versions 0.1.5 dated 2026-01-07 and 0.1.6 dated 2026-04-16
DESCRIPTION | 6 +++--- MD5 | 19 ++++++++++--------- NEWS.md |only R/engression.R | 20 +++++++++++--------- R/engressionfit.R | 4 ++-- R/predict.engression.R | 17 +++++++++-------- R/print.engression.R | 6 ++++-- man/engression.Rd | 10 ++++++---- man/engressionfit.Rd | 4 ++-- man/predict.engression.Rd | 6 +++--- man/print.engression.Rd | 4 +++- 11 files changed, 53 insertions(+), 43 deletions(-)
Title: Convert Country Names and Country Codes
Description: Standardize country names, convert them into one of 40
different coding schemes, convert between coding schemes, and assign
region descriptors.
Author: Vincent Arel-Bundock [aut, cre] ,
CJ Yetman [ctb] ,
Nils Enevoldsen [ctb] ,
Etienne Bacher [ctb] ,
Samuel Meichtry [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between countrycode versions 1.7.0 dated 2026-02-27 and 1.8.0 dated 2026-04-16
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ R/codelist.R | 1 + R/countrycode.R | 8 +++++--- data/codelist.rda |binary data/codelist_panel.rda |binary man/codelist.Rd | 1 + tests/testthat/test-corner-cases.R | 3 +++ tests/testthat/test-regex-internal.R | 34 ++++++++++++++++++++++------------ tests/testthat/test-regex-special.R | 5 +++++ 11 files changed, 55 insertions(+), 28 deletions(-)
Title: Quantum Computing for Analyzing CD4 Lymphocytes and
Antiretroviral Therapy
Description: Resources, tutorials, and code snippets dedicated to exploring the intersection of quantum computing and artificial intelligence (AI) in the context of analyzing Cluster of Differentiation 4 (CD4) lymphocytes and optimizing antiretroviral therapy (ART) for human immunodeficiency virus (HIV). With the emergence of quantum artificial intelligence and the development of small-scale quantum computers, there's an unprecedented opportunity to revolutionize the understanding of HIV dynamics and treatment strategies. This project leverages a quantum computer simulator, to explore these applications in quantum computing techniques, addressing the challenges in studying CD4 lymphocytes and enhancing ART efficacy.
Author: Juan Pablo Acuna Gonzalez [aut, cre, cph]
Maintainer: Juan Pablo Acuna Gonzalez <22253567@uagro.mx>
Diff between qvirus versions 0.0.5 dated 2025-11-09 and 0.0.6 dated 2026-04-15
DESCRIPTION | 10 +--- MD5 | 10 ++-- NEWS.md | 12 ++++ R/data.R | 132 +++++++++++++++++++++++++++++++++++++++++++++++++++++ data/data_corr.rda |only data/data_enc.rda |only man/data_corr.Rd |only man/data_enc.Rd |only 8 files changed, 155 insertions(+), 9 deletions(-)
Title: Optimal Monotone Conditional Error Functions
Description: Design and analysis of confirmatory adaptive clinical trials using the optimal conditional error framework according to Brannath and Bauer (2004) <doi:10.1111/j.0006-341X.2004.00221.x>. An extension to the optimal conditional error function using interim estimates as described in Brannath and Dreher (2024) <doi:10.48550/arXiv.2402.00814> and functions to ensure that the resulting conditional error function is non-increasing are also available.
Author: Morten Dreher [aut, cre],
Werner Brannath [aut, cph] ,
Cornelia Ursula Kunz [ctb] ,
Johanna zur Verth [aut]
Maintainer: Morten Dreher <morten.dreher@outlook.de>
Diff between optconerrf versions 1.0.1 dated 2025-09-29 and 1.0.2 dated 2026-04-15
DESCRIPTION | 6 MD5 | 21 NEWS.md | 4 R/classes.R | 70 R/utilities.R | 1666 ++++++++++----------- README.md | 6 man/dot-rangeCheck.Rd | 3 tests/testthat/test-getLevelConstant.R | 193 +- tests/testthat/test-getLikelihoodRatio.R |only tests/testthat/test-getOptimalConditionalError.R | 353 +++- tests/testthat/test-getPsi.R |only tests/testthat/test-getSimulationResults.R |only tests/testthat/test-integrateExpectedInformation.R |only tests/testthat/test-utilities.R |only 14 files changed, 1288 insertions(+), 1034 deletions(-)
Title: Network Meta-Analysis of Multiple Diagnostic Tests
Description: Provides statistical methods for network meta-analysis
of diagnostic tests to simultaneously compare multiple tests within a
missing data framework, including:
- Bayesian hierarchical model for network meta-analysis of multiple
diagnostic tests
(Ma, Lian, Chu, Ibrahim, and Chen (2018) <doi:10.1093/biostatistics/kxx025>)
- Bayesian Hierarchical Summary Receiver Operating Characteristic Model
for Network Meta-Analysis of Diagnostic Tests
(Lian, Hodges, and Chu (2019) <doi:10.1080/01621459.2018.1476239>).
Author: Xing Xing [aut, cre] ,
Boyang Lu [aut],
Lifeng Lin [aut],
Qinshu Lian [aut],
James S. Hodges [aut],
Yong Chen [aut],
Haitao Chu [aut]
Maintainer: Xing Xing <xxing8@jh.edu>
Diff between NMADTA versions 0.1.2 dated 2026-01-14 and 0.1.3 dated 2026-04-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/contour_hierarchical.R | 3 +-- R/contour_hsroc.R | 1 - R/nmadt.hierarchical.MNAR.R | 2 +- build/partial.rdb |binary man/nmadt.hierarchical.MNAR.Rd | 2 +- 7 files changed, 13 insertions(+), 15 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-15 0.49.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-15 1.69.3-2
Title: Decompose Life Expectancy by Age (and Cause)
Description: A set of all-cause and cause-specific life expectancy sensitivity and decomposition methods, including Arriaga (1984) <doi:10.2307/2061029>, others documented by Ponnapalli (2005) <doi:10.4054/DemRes.2005.12.7>, lifetable, numerical, and other analytic or algorithmic approaches such as Horiuchi et al (2008) <doi:10.1353/dem.0.0033>, or Andreev et al (2002) <doi:10.4054/DemRes.2002.7.14>.
Author: Tim Riffe [aut, cre] ,
David Atance [aut] ,
Josep Lledo [aut]
Maintainer: Tim Riffe <tim.riffe@gmail.com>
Diff between LEdecomp versions 1.0.4 dated 2025-11-11 and 1.0.14 dated 2026-04-15
DESCRIPTION | 14 - MD5 | 74 +++++---- NAMESPACE | 9 + R/LEdecomp.R | 198 ++++++++++++++++---------- R/US_Data.R | 23 +-- R/US_data_CoD.R | 24 +-- R/andreev.R |only R/arriaga.R | 7 R/lopez_ruzicka.R | 125 +++++++++++++++- R/lt_sen.R | 2 R/methods.R | 42 +++-- R/plot.LEdecomp.R | 38 ++-- R/sen_opt.R | 9 - README.md | 2 build/partial.rdb |binary data/US_data.rda |binary data/US_data_CoD.rda |binary data/method_registry.rda |binary inst/REFERENCES.bib | 39 +++++ man/LEdecomp.Rd | 19 +- man/US_data.Rd | 17 +- man/US_data_CoD.Rd | 23 +-- man/andreev.Rd |only man/andreev_sym.Rd |only man/arriaga_sym.Rd | 8 - man/lopez_ruzicka.Rd | 2 man/lopez_ruzicka_sym.Rd | 3 man/method_registry.Rd | 2 man/plot.LEdecomp.Rd | 32 +--- man/sen_andreev.Rd |only man/sen_andreev_instantaneous.Rd |only man/sen_andreev_instantaneous2.Rd |only man/sen_andreev_sym.Rd |only man/sen_andreev_sym_instantaneous.Rd |only man/sen_andreev_sym_instantaneous2.Rd |only man/sen_min.Rd | 2 man/sen_resid.Rd | 7 tests/testthat.R | 2 tests/testthat/test-LEdecomp-shape-echo.R |only tests/testthat/test-abridged.R | 6 tests/testthat/test-additivity.R | 8 - tests/testthat/test-sens-abridged-vs-single.R | 9 - tests/testthat/test-symmetry.R | 20 ++ 43 files changed, 508 insertions(+), 258 deletions(-)
Title: Constrained Ordinary Least Squares
Description: Constrained ordinary least squares is performed. One constraint is that all beta coefficients (including the constant) cannot be negative. They can be either 0 or strictly positive. Another constraint is that the sum of the beta coefficients equals a constant. References: Hansen, B. E. (2022). Econometrics, Princeton University Press. <ISBN:9780691235899>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between cols versions 1.6 dated 2026-03-24 and 1.7 dated 2026-04-15
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 +- R/mpcls.R | 31 +++++++++++++++++++------------ R/mpls.R | 31 +++++++++++++++++++------------ man/cols-package.Rd | 4 ++-- 6 files changed, 50 insertions(+), 36 deletions(-)
Title: A 'Shiny' Tool to Create Interactive Catalogues for Geospatial
Data
Description: Seamlessly create interactive online catalogues for geospatial data. Items can be mapped as points or areas and retrieved using either a map or a dynamic table with search form and optional column filters.
Author: Sebastien Plutniak [aut, cre]
Maintainer: Sebastien Plutniak <sebastien.plutniak@posteo.net>
Diff between spatialCatalogueViewer versions 0.2.0 dated 2026-02-25 and 0.2.1 dated 2026-04-15
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/app_server.R | 16 ++++++++-------- 5 files changed, 24 insertions(+), 17 deletions(-)
More information about spatialCatalogueViewer at CRAN
Permanent link
Title: Endogenous Switching and Sample Selection Regression Models
Description: Estimate the parameters of multivariate endogenous switching and sample selection models using methods described in Newey (2009) <doi:10.1111/j.1368-423X.2008.00263.x>, E. Kossova, B. Potanin (2018) <https://ideas.repec.org/a/ris/apltrx/0346.html>, E. Kossova, L. Kupriianova, B. Potanin (2020) <https://ideas.repec.org/a/ris/apltrx/0391.html> and E. Kossova, B. Potanin (2022) <https://ideas.repec.org/a/ris/apltrx/0455.html>.
Author: Bogdan Potanin [aut, cre, ctb],
Sofiia Dolgikh [ctb]
Maintainer: Bogdan Potanin <bogdanpotanin@gmail.com>
Diff between switchSelection versions 2.0.0 dated 2024-09-26 and 2.1.0 dated 2026-04-15
DESCRIPTION | 12 MD5 | 94 +++---- NAMESPACE | 5 R/RcppExports.R | 2 R/bootstrap.R | 140 +++++++---- R/cluster.R |only R/coef.R | 12 R/complete.R | 4 R/cps.R | 8 R/data.R | 4 R/fitted.R | 6 R/formula.R | 4 R/groups.R | 6 R/helpFunctions.R | 2 R/lm.R | 2 R/logLik.R | 6 R/lrtest.R | 6 R/msel.R | 210 +++++++++++----- R/names.R | 2 R/opt.R | 36 +- R/par.R | 6 R/predict.R | 224 ++++++++++------- R/sigma.R | 2 R/summary.R | 32 +- R/tbl.R | 39 ++- R/test.R | 494 +++++++++++++++++++++++++++++---------- R/vcov.R | 429 ++++++++++++++++++++++++++++----- data/cps.rda |binary man/bootstrap.Rd | 76 ++++-- man/coef.msel.Rd | 37 +- man/cps.Rd | 8 man/exogenous_fn.Rd | 2 man/fitted.msel.Rd | 6 man/formula_merge.Rd | 2 man/lnL_msel.Rd | 2 man/logLik.msel.Rd | 4 man/lrtest_msel.Rd | 2 man/msel.Rd | 323 +++++++++++++------------ man/nobs.msel.Rd | 2 man/predict.msel.Rd | 57 ++-- man/print.lrtest_msel.Rd | 2 man/print.summary.lrtest_msel.Rd | 2 man/struct_msel.Rd | 8 man/summary.msel.Rd | 8 man/test_msel.Rd | 117 +++++++-- man/update_msel.Rd | 6 man/vcov.msel.Rd | 19 + man/vcov_combine.Rd |only src/msel.cpp | 28 +- 49 files changed, 1726 insertions(+), 772 deletions(-)
More information about switchSelection at CRAN
Permanent link
Title: A Fast Permutation-Based Split-Half Reliability Algorithm
Description: Accurately estimates the reliability of cognitive tasks using a fast and flexible permutation-based split-half reliability algorithm that supports stratified splitting while maintaining equal split sizes. See Kahveci, Bathke, and Blechert (2025) <doi:10.3758/s13423-024-02597-y> for details.
Author: Sercan Kahveci [aut, cre]
Maintainer: Sercan Kahveci <sercan.kahveci@plus.ac.at>
Diff between rapidsplithalf versions 0.6 dated 2025-11-10 and 0.7 dated 2026-04-15
DESCRIPTION | 8 +-- MD5 | 36 +++++++------- NAMESPACE | 2 R/cormean.R | 97 +++++++++++++++++++++++++++++++------- R/helpers.R | 57 +++++++++++----------- R/piper.R | 8 +-- R/rapidsplit.R | 80 ++++++++++++++++++------------- R/spearmanbrown.R | 37 ++++++++++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/rapidsplithalf.html | 19 ++++--- man/comprel.Rd |only man/correlation-tools.Rd | 4 + man/figures/README-iatrel-1.png |binary man/figures/README-plotter-1.png |binary man/figures/README-plotter2-1.png |binary man/generateSplits.Rd | 8 ++- man/rapidsplit.Rd | 29 ++++++----- man/requiredTestSize.Rd |only man/spearmanBrown.Rd | 3 + 20 files changed, 264 insertions(+), 124 deletions(-)
More information about rapidsplithalf at CRAN
Permanent link
Title: An Object Oriented System Meant to Become a Successor to S3 and
S4
Description: A new object oriented programming system designed to be a
successor to S3 and S4. It includes formal class, generic, and method
specification, and a limited form of multiple dispatch. It has been
designed and implemented collaboratively by the R Consortium
Object-Oriented Programming Working Group, which includes
representatives from R-Core, 'Bioconductor', 'Posit'/'tidyverse', and
the wider R community.
Author: Object-Oriented Programming Working Group [cph],
Davis Vaughan [aut],
Jim Hester [aut] ,
Tomasz Kalinowski [aut],
Will Landau [aut],
Michael Lawrence [aut],
Martin Maechler [aut] ,
Luke Tierney [aut],
Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between S7 versions 0.2.1 dated 2025-11-14 and 0.2.1-1 dated 2026-04-15
S7-0.2.1-1/S7/DESCRIPTION | 4 - S7-0.2.1-1/S7/build/vignette.rds |binary S7-0.2.1-1/S7/inst/doc/S7.html | 13 +-- S7-0.2.1-1/S7/inst/doc/classes-objects.html | 57 +++++++++------- S7-0.2.1-1/S7/inst/doc/compatibility.html | 5 - S7-0.2.1-1/S7/inst/doc/generics-methods.html | 5 - S7-0.2.1-1/S7/inst/doc/motivation.html | 5 - S7-0.2.1-1/S7/inst/doc/packages.html | 5 - S7-0.2.1-1/S7/inst/doc/performance.html | 95 +++++++++++++-------------- S7-0.2.1-1/S7/src/init.c | 1 S7-0.2.1-1/S7/src/method-dispatch.c | 1 S7-0.2.1-1/S7/src/prop.c | 1 S7-0.2.1/S7/MD5 |only 13 files changed, 99 insertions(+), 93 deletions(-)
Title: Text Analysis for All
Description: An R 'shiny' app designed for diverse text analysis tasks, offering a wide range of methodologies tailored to Natural Language Processing (NLP) needs.
It is a versatile, general-purpose tool for analyzing textual data.
'tall' features a comprehensive workflow, including data cleaning, preprocessing, statistical analysis, and visualization, all integrated for effective text analysis.
Author: Massimo Aria [aut, cre, cph] ,
Maria Spano [aut] ,
Luca D'Aniello [aut] ,
Corrado Cuccurullo [ctb] ,
Michelangelo Misuraca [ctb]
Maintainer: Massimo Aria <aria@unina.it>
Diff between tall versions 0.5.2 dated 2026-02-12 and 1.0.0 dated 2026-04-15
tall-0.5.2/tall/inst/tall/tallFunctions.R |only tall-1.0.0/tall/DESCRIPTION | 24 tall-1.0.0/tall/MD5 | 91 tall-1.0.0/tall/NAMESPACE | 87 tall-1.0.0/tall/NEWS.md | 124 + tall-1.0.0/tall/R/RcppExports.R | 12 tall-1.0.0/tall/R/extract_np.R |only tall-1.0.0/tall/R/extract_svo.R |only tall-1.0.0/tall/R/reinert.R | 36 tall-1.0.0/tall/R/syntactic_complexity.R |only tall-1.0.0/tall/R/zzz.R | 85 tall-1.0.0/tall/README.md | 410 ++- tall-1.0.0/tall/inst/CITATION | 33 tall-1.0.0/tall/inst/tall/collocation.R | 147 - tall-1.0.0/tall/inst/tall/cssTags.R | 627 ----- tall-1.0.0/tall/inst/tall/doc_classification.R | 44 tall-1.0.0/tall/inst/tall/documents.R | 2208 +++++++++++++++++--- tall-1.0.0/tall/inst/tall/edit.R | 46 tall-1.0.0/tall/inst/tall/featureroles.R | 349 +-- tall-1.0.0/tall/inst/tall/filters_groups.R | 54 tall-1.0.0/tall/inst/tall/header.R | 18 tall-1.0.0/tall/inst/tall/helpContent.R | 995 ++++++--- tall-1.0.0/tall/inst/tall/home.R | 290 ++ tall-1.0.0/tall/inst/tall/import.R | 122 - tall-1.0.0/tall/inst/tall/keyness.R | 99 tall-1.0.0/tall/inst/tall/libraries.R | 86 tall-1.0.0/tall/inst/tall/overview.R | 743 ++++++ tall-1.0.0/tall/inst/tall/preprocessing.R | 416 ++- tall-1.0.0/tall/inst/tall/report.R | 11 tall-1.0.0/tall/inst/tall/server.R | 183 + tall-1.0.0/tall/inst/tall/settings.R | 444 ++-- tall-1.0.0/tall/inst/tall/tallAI.R | 635 +++++ tall-1.0.0/tall/inst/tall/tallEmbeddings.R |only tall-1.0.0/tall/inst/tall/tallLanguages.R |only tall-1.0.0/tall/inst/tall/tallNLP.R |only tall-1.0.0/tall/inst/tall/tallNetwork.R |only tall-1.0.0/tall/inst/tall/tallOverview.R |only tall-1.0.0/tall/inst/tall/tallReport.R |only tall-1.0.0/tall/inst/tall/tallSentiment.R |only tall-1.0.0/tall/inst/tall/tallShot.R | 11 tall-1.0.0/tall/inst/tall/tallTextIO.R |only tall-1.0.0/tall/inst/tall/tallTopicModel.R |only tall-1.0.0/tall/inst/tall/tallUtils.R |only tall-1.0.0/tall/inst/tall/tallVisualization.R |only tall-1.0.0/tall/inst/tall/ui.R | 92 tall-1.0.0/tall/inst/tall/words.R | 876 ++----- tall-1.0.0/tall/inst/tall/www/dep_tree_example.png |only tall-1.0.0/tall/inst/tall/www/tall-handlers.js |only tall-1.0.0/tall/inst/tall/www/tall-static.css |only tall-1.0.0/tall/man/compute_syntactic_complexity.Rd |only tall-1.0.0/tall/man/extract_noun_phrases.Rd |only tall-1.0.0/tall/man/extract_svo_triplets.Rd |only tall-1.0.0/tall/src/RcppExports.cpp | 53 tall-1.0.0/tall/src/extract_np.cpp |only tall-1.0.0/tall/src/extract_svo.cpp |only tall-1.0.0/tall/src/syntactic_complexity.cpp |only tall-1.0.0/tall/tests |only 57 files changed, 6491 insertions(+), 2960 deletions(-)
Title: Space Filling Optimal Covariate Designs
Description: We have designed this package to address experimental scenarios involving multiple covariates. It focuses on construction of Optimal Covariate Designs (OCDs), checking space filling property of the developed design. The primary objective of the package is to generate OCDs using four methods viz., M array method, Juxtapose method, Orthogonal Integer Array and Hadamard method. The package also evaluates space filling properties of both the base design and OCDs using the MaxPro criterion, providing a meaningful basis for comparison. In addition, it includes tool to visualize the spread offered by the design points in the form of scatterplot, which help users to assess distribution and coverage of design points.
Author: Neethu RS [aut, ctb],
Cini Varghese [aut, ctb],
Mohd Harun [aut, ctb],
Anindita Datta [aut, ctb],
Ashutosh Dalal [aut, ctb, cre]
Maintainer: Ashutosh Dalal <ashutosh.dalal97@gmail.com>
Diff between SFOCDs versions 1.0.0 dated 2025-12-04 and 1.1.0 dated 2026-04-15
DESCRIPTION | 6 ++--- MD5 | 6 ++--- R/Maxpro_Criterion.R | 56 ++++++++++++++++++++++++++++++++++++------------ man/Maxpro_Criterion.Rd | 6 +++-- 4 files changed, 53 insertions(+), 21 deletions(-)
Title: Fully Parameterizable ANOVA Tests
Description: Allows the user to perform ANOVA tests (in a strict sense: continuous and normally-distributed Y variable and 1 or more factorial/categorical X variable(s)), with the possibility to specify the type of sum of squares (1, 2 or 3), the types of variables (Fixed or Random) and their relationships (crossed or nested) with the sole function of the package (FullyParamANOVA()). The resulting outputs are the same as in 'SAS' software. A dataset (Butterfly) to test the function is also joined.
Author: Victor Brans [aut, cre]
Maintainer: Victor Brans <vicbrans003@gmail.com>
Diff between ParamANOVA versions 0.1.2 dated 2025-03-07 and 0.1.3 dated 2026-04-15
DESCRIPTION | 9 MD5 | 6 R/Funs.R | 2175 ++++++++++++++++++++++++++++--------------------- man/FullyParamANOVA.Rd | 10 4 files changed, 1259 insertions(+), 941 deletions(-)
Title: Hugging Face Hub Interface
Description: Provides functionality to download and cache files from 'Hugging Face Hub' <https://huggingface.co/models>.
Uses the same caching structure so files can be shared between different client libraries.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [aut],
Christophe Regouby [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between hfhub versions 0.1.1 dated 2023-08-18 and 0.1.2 dated 2026-04-15
DESCRIPTION | 24 +++-- LICENSE | 2 MD5 | 26 +++-- NEWS.md | 7 + R/hub_download.R | 137 ++++++++++++++++++++++++++--- R/hub_info.R | 8 + R/hub_snapshot.R | 9 + README.md | 2 inst |only man/hub_repo_info.Rd | 10 ++ man/hub_snapshot.Rd | 12 ++ po |only tests/testthat/_snaps/hub_snapshot.md | 2 tests/testthat/test-hub_download.R | 7 + tests/testthat/test-message-translations.R |only 15 files changed, 207 insertions(+), 39 deletions(-)
Title: Subset Partitioning via Anticlustering
Description: The method of anticlustering partitions a pool of elements into groups (i.e., anticlusters) with the goal of maximizing between-group similarity or within-group heterogeneity. The anticlustering approach thereby reverses the logic of cluster analysis that strives for high within-group homogeneity and clear separation between groups. Computationally, anticlustering is accomplished by maximizing instead of minimizing a clustering objective function, such as the intra-cluster variance (used in k-means clustering) or the sum of pairwise distances within clusters. The main function anticlustering() gives access to optimal and heuristic anticlustering methods described in Papenberg and Klau (2021; <doi:10.1037/met0000301>), Brusco et al. (2020; <doi:10.1111/bmsp.12186>), Papenberg (2024; <doi:10.1111/bmsp.12315>), Papenberg, Wang, et al. (2025; <doi:10.1016/j.crmeth.2025.101137>), Papenberg, Breuer, et al. (2025; <doi:10.1017/psy.2025.10052>), and Yang et al. [...truncated...]
Author: Martin Papenberg [aut, cre] ,
Meik Michalke [ctb] ,
Gunnar W. Klau [ths],
Juliane V. Nagel [ctb] ,
Martin Breuer [ctb] ,
Marie L. Schaper [ctb] ,
Max Diekhoff [ctb] ,
Hannah Hengelbrock [ctb]
Maintainer: Martin Papenberg <martin.papenberg@hhu.de>
Diff between anticlust versions 0.8.13 dated 2025-11-29 and 0.8.14 dated 2026-04-15
DESCRIPTION | 8 MD5 | 17 R/categories_to_binary.R | 7 build/vignette.rds |binary inst/doc/Anticlustering_in_2025.html | 1030 ++++++++++++++++++------------- inst/doc/Best_practices.html | 106 ++- inst/doc/Categorical_vars.html | 633 +++++++++++-------- inst/doc/Speeding_up_anticlustering.html | 772 +++++++++++++++-------- inst/doc/stimulus-selection.html | 694 ++++++++++++-------- inst/tinytest/test-one-hot-encoding.R |only 10 files changed, 1964 insertions(+), 1303 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
JJ Allaire [aut] ,
Kevin Ushey [aut] ,
Qiang Kou [aut] ,
Nathan Russell [aut],
Inaki Ucar [aut] ,
Doug Bates [aut] ,
John Chambers [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 1.1.1 dated 2026-01-10 and 1.1.1-1 dated 2026-04-15
Rcpp-1.1.1-1/Rcpp/ChangeLog | 11 ++ Rcpp-1.1.1-1/Rcpp/DESCRIPTION | 15 +-- Rcpp-1.1.1-1/Rcpp/build/partial.rdb |binary Rcpp-1.1.1-1/Rcpp/inst/NEWS.Rd | 9 + Rcpp-1.1.1-1/Rcpp/inst/include/Rcpp/Environment.h | 70 ++++----------- Rcpp-1.1.1-1/Rcpp/inst/include/Rcpp/Function.h | 11 +- Rcpp-1.1.1-1/Rcpp/inst/include/Rcpp/Promise.h | 11 +- Rcpp-1.1.1-1/Rcpp/inst/include/Rcpp/api/meat/Rcpp_eval.h | 4 Rcpp-1.1.1-1/Rcpp/inst/include/Rcpp/config.h | 4 Rcpp-1.1.1-1/Rcpp/tests/tinytest.R | 3 Rcpp-1.1.1/Rcpp/MD5 |only 11 files changed, 63 insertions(+), 75 deletions(-)
Title: Interface for the 'QuickJS-NG' Lightweight 'JavaScript' Engine
Description: An 'R' interface to the 'QuickJS' portable 'JavaScript'
engine. The engine and all 'R' to 'JavaScript' interoperability is bundled
within the package, requiring no dependencies beyond a 'C' compiler.
Author: Andrew R. Johnson [aut, cre] ,
QuickJS Authors [cph] ,
QuickJS-NG Authors [cph]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between QuickJSR versions 1.9.1 dated 2026-04-09 and 1.9.1-2 dated 2026-04-15
QuickJSR-1.9.1-2/QuickJSR/DESCRIPTION | 4 ++-- QuickJSR-1.9.1-2/QuickJSR/build/vignette.rds |binary QuickJSR-1.9.1-2/QuickJSR/inst/doc/working_with_js_types.html | 7 +++---- QuickJSR-1.9.1-2/QuickJSR/src/include/cpp11/R.hpp | 1 + QuickJSR-1.9.1-2/QuickJSR/src/init.cpp | 1 + QuickJSR-1.9.1/QuickJSR/MD5 |only 6 files changed, 7 insertions(+), 6 deletions(-)
Title: Lightweight Precondition, Postcondition, and Sanity Checks
Description: Implements fast, safe, and customizable assertions routines, which
can be used in place of base::stopifnot().
Author: Taras Zakharko [aut, cre]
Maintainer: Taras Zakharko <taras.zakharko@gmail.com>
Diff between precondition versions 0.1.0 dated 2023-03-28 and 0.1.0-1 dated 2026-04-15
precondition-0.1.0-1/precondition/DESCRIPTION | 4 ++-- precondition-0.1.0-1/precondition/src/precondition.c | 1 + precondition-0.1.0/precondition/MD5 |only 3 files changed, 3 insertions(+), 2 deletions(-)
Title: Persistence Homology Utilities
Description: A low-level package for hosting persistence data. It is part of the
'TDAverse' suite of packages, which is designed to provide a collection of
packages for enabling machine learning and data science tasks using
persistent homology. Implements a class for hosting persistence data, a
number of coercers from and to already existing and used data structures
from other packages and functions to compute distances between persistence
diagrams. A formal definition and study of bottleneck and Wasserstein
distances can be found in Bubenik, Scott and Stanley (2023)
<doi:10.1007/s41468-022-00103-8>. Their implementation in 'phutil' relies on
the 'C++' Hera library developed by Kerber, Morozov and Nigmetov (2017)
<doi:10.1145/3064175>.
Author: Aymeric Stamm [aut, cre] ,
Jason Cory Brunson [aut] ,
Michael Kerber [ctb] ,
Dmitriy Morozov [ctb] ,
Arnur Nigmetov [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@cnrs.fr>
Diff between phutil versions 0.0.1 dated 2025-05-15 and 0.0.1-2 dated 2026-04-15
phutil-0.0.1-2/phutil/DESCRIPTION | 4 phutil-0.0.1-2/phutil/build/partial.rdb |binary phutil-0.0.1-2/phutil/build/vignette.rds |binary phutil-0.0.1-2/phutil/inst/doc/persistence-class.html | 180 +++++++++++--- phutil-0.0.1-2/phutil/inst/doc/validation-benchmark.html | 184 +++++++++++---- phutil-0.0.1-2/phutil/inst/include/cpp11/R.hpp | 1 phutil-0.0.1/phutil/MD5 |only 7 files changed, 295 insertions(+), 74 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in
parallel, so metadata resolution and package downloads are fast.
Metadata and package files are cached on the local disk as well. 'pak'
has a dependency solver, so it finds version conflicts before
performing the installation. This version of 'pak' supports CRAN,
'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Posit Software, PBC [cph, fnd] ,
Winston Chang [ctb] ,
Ascent Digital Services [cph, fnd] ,
Hadley Wickham [ctb, cph] ,
Jeroen Ooms [ctb] ,
Maelle Salmon [ctb] ,
Duncan Temple Lang [ctb] ,
Lloyd Hilaiel [cph [...truncated...]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.9.3 dated 2026-04-09 and 0.9.3-1 dated 2026-04-15
pak-0.9.3-1/pak/DESCRIPTION | 4 ++-- pak-0.9.3-1/pak/src/library/cli/src/cleancall.c | 2 +- pak-0.9.3-1/pak/src/library/cli/src/init.c | 2 +- pak-0.9.3-1/pak/src/library/cli/src/progress.c | 4 ++-- pak-0.9.3-1/pak/src/library/processx/src/cleancall.c | 2 +- pak-0.9.3-1/pak/src/library/processx/src/init.c | 2 +- pak-0.9.3-1/pak/src/library/ps/src/cleancall.c | 2 +- pak-0.9.3/pak/MD5 |only 8 files changed, 9 insertions(+), 9 deletions(-)
Title: Implements the Leiden Algorithm via an R Interface
Description: An R interface to the Leiden algorithm, an iterative community detection algorithm on networks. The algorithm is designed to converge to a partition in which all subsets of all communities are locally optimally assigned, yielding communities guaranteed to be connected. The implementation proves to be fast, scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The original implementation was constructed as a python interface "leidenalg" found here: <https://github.com/vtraag/leidenalg>. The algorithm was originally described in Traag, V.A., Waltman, L. & van Eck, N.J. "From Louvain to Leiden: guaranteeing well-connected communities". Sci Rep 9, 5233 (2019) <doi:10.1038/s41598-019-41695-z>.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
Yichen Wang [aut],
V.A. Traag [ctb],
Gabor Csardi [ctb],
Tamas Nepusz [ctb],
Minh Van Nguyen [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between leidenAlg versions 1.1.6 dated 2026-03-06 and 1.1.6-1 dated 2026-04-15
leidenAlg-1.1.6-1/leidenAlg/DESCRIPTION | 4 ++-- leidenAlg-1.1.6-1/leidenAlg/src/rigraph/lazyeval.c | 3 +++ leidenAlg-1.1.6-1/leidenAlg/src/rigraph/rinterface_extra.c | 7 +++++-- leidenAlg-1.1.6/leidenAlg/MD5 |only 4 files changed, 10 insertions(+), 4 deletions(-)
Title: Classes and Methods for 'IP' Addresses
Description: Provides S4 classes for Internet Protocol (IP) versions 4 and 6 addresses and efficient methods for 'IP' addresses comparison, arithmetic, bit manipulation and lookup. Both 'IPv4' and 'IPv6' arbitrary ranges are also supported as well as internationalized ('IDN') domain lookup with and 'whois' query.
Author: Thomas Soubiran [aut],
Rucknium [cre]
Maintainer: Rucknium <Rucknium@protonmail.com>
Diff between IP versions 0.1.6 dated 2025-05-07 and 0.1.6-1 dated 2026-04-15
IP-0.1.6-1/IP/DESCRIPTION | 4 ++-- IP-0.1.6-1/IP/build/vignette.rds |binary IP-0.1.6-1/IP/inst/doc/ip-host.html | 2 +- IP-0.1.6-1/IP/inst/doc/ip-intro.html | 8 ++++---- IP-0.1.6-1/IP/src/Rip.h | 1 + IP-0.1.6/IP/MD5 |only 6 files changed, 8 insertions(+), 7 deletions(-)
Title: Density Estimation with Semidefinite Programming
Description: The models of probability density functions are Gaussian or
exponential distributions with polynomial correction terms.
Using a maximum likelihood method, 'dsdp' computes parameters of Gaussian
or exponential distributions together with degrees of polynomials by
a grid search, and coefficient of polynomials by a variant of semidefinite
programming. It adopts Akaike Information Criterion for model selection.
See a vignette for a tutorial and more on our 'Github' repository
<https://github.com/tsuchiya-lab/dsdp/>.
Author: Satoshi Kakihara [aut, cre],
Takashi Tsuchiya [aut]
Maintainer: Satoshi Kakihara <skakihara@gmail.com>
Diff between dsdp versions 0.1.1 dated 2023-02-11 and 0.1.1-1 dated 2026-04-15
dsdp-0.1.1-1/dsdp/DESCRIPTION | 4 dsdp-0.1.1-1/dsdp/build/vignette.rds |binary dsdp-0.1.1-1/dsdp/inst/doc/Tutorial.R | 370 ++++++++++++++++---------------- dsdp-0.1.1-1/dsdp/inst/doc/Tutorial.pdf |binary dsdp-0.1.1-1/dsdp/src/interface.c | 12 - dsdp-0.1.1/dsdp/MD5 |only 6 files changed, 193 insertions(+), 193 deletions(-)
Title: Header-Only 'C++' and 'R' Interface
Description: Provides a header only, 'C++' interface to 'R' with enhancements over 'cpp11'. Enforces copy-on-write
semantics consistent with 'R' behavior. Offers native support for ALTREP objects, 'UTF-8' string handling, modern
'C++11' features and idioms, and reduced memory requirements. Allows for vendoring, making it useful for restricted
environments. Compared to 'cpp11', it adds support for converting 'C++' maps to 'R' lists, 'Roxygen' documentation
directly in 'C++' code, proper handling of matrix attributes, support for nullable external pointers, bidirectional
copy of complex number types, flexibility in type conversions, use of nullable pointers, and various performance
optimizations.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Posit Software, PBC [aut]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between cpp4r versions 0.5.1 dated 2026-04-15 and 0.5.0-1 dated 2026-04-15
cpp4r |only 1 file changed
Title: Fast AR and ARMA Noise Whitening for Functional MRI (fMRI)
Design and Data
Description: Lightweight utilities to estimate autoregressive (AR) and
autoregressive moving average (ARMA) noise models from residuals and apply
matched generalized least squares to whiten functional magnetic resonance
imaging (fMRI) design and data matrices. The ARMA estimator follows a
classic 1982 approach <doi:10.1093/biomet/69.1.81>, and a restricted AR
family mirrors workflows described by Cox (2012)
<doi:10.1016/j.neuroimage.2011.08.056>.
Author: Bradley Buchsbaum [aut, cre]
Maintainer: Bradley Buchsbaum <brad.buchsbaum@gmail.com>
Diff between fmriAR versions 0.3.1 dated 2026-01-25 and 0.3.2 dated 2026-04-15
DESCRIPTION | 6 +-- MD5 | 12 ++++-- NEWS.md | 13 ++++++- R/fit_and_apply.R | 52 +++++++++++++++++++++++++--- inst/doc/fmriAR-introduction.html | 4 +- tests/testthat/test-ar-contracts.R |only tests/testthat/test-exported-helpers.R |only tests/testthat/test-multiscale-invariants.R |only tests/testthat/test-whitening-oracle-arma.R |only 9 files changed, 72 insertions(+), 15 deletions(-)
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: Functions to accompany A. Gelman and J. Hill, Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge University Press, 2007.
Author: Andrew Gelman [aut],
Yu-Sung Su [aut, cre] ,
Masanao Yajima [ctb],
Jennifer Hill [ctb],
Maria Grazia Pittau [ctb],
Jouni Kerman [ctb],
Tian Zheng [ctb],
Vincent Dorie [ctb]
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>
Diff between arm versions 1.15-2 dated 2026-03-22 and 1.15-3 dated 2026-04-15
CHANGELOG | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/standardize.R | 2 +- man/standardize.Rd | 3 +++ 5 files changed, 17 insertions(+), 9 deletions(-)
Title: Transition Network Analysis (TNA)
Description: Provides tools for performing Transition Network Analysis (TNA) to
study relational dynamics, including functions for building and plotting TNA
models, calculating centrality measures, and identifying dominant events and
patterns. TNA statistical techniques (e.g., bootstrapping and permutation
tests) ensure the reliability of observed insights and confirm that
identified dynamics are meaningful. See (Saqr et al., 2025)
<doi:10.1145/3706468.3706513> for more details on TNA.
Author: Mohammed Saqr [aut],
Santtu Tikka [aut],
Sonsoles Lopez-Pernas [aut, cre]
Maintainer: Sonsoles Lopez-Pernas <sonsoles.lopez@uef.fi>
Diff between tna versions 1.2.0 dated 2026-02-12 and 1.2.2 dated 2026-04-15
tna-1.2.0/tna/R/coef.R |only tna-1.2.0/tna/R/indices.R |only tna-1.2.0/tna/R/vcov.R |only tna-1.2.0/tna/tests/testthat/test-indices.R |only tna-1.2.2/tna/DESCRIPTION | 16 tna-1.2.2/tna/MD5 | 144 tna-1.2.2/tna/NEWS.md | 12 tna-1.2.2/tna/R/betweenness.R | 13 tna-1.2.2/tna/R/bootstrap.R | 8 tna-1.2.2/tna/R/centralities.R | 22 tna-1.2.2/tna/R/check.R | 79 tna-1.2.2/tna/R/clusters.R | 93 tna-1.2.2/tna/R/compare.R | 8 tna-1.2.2/tna/R/data.R | 28 tna-1.2.2/tna/R/groups.R | 19 tna-1.2.2/tna/R/mmm.R | 530 -- tna-1.2.2/tna/R/plot.R | 418 - tna-1.2.2/tna/R/print.R | 94 tna-1.2.2/tna/R/summary.R | 46 tna-1.2.2/tna/R/tna-package.R | 4 tna-1.2.2/tna/README.md | 116 tna-1.2.2/tna/build/partial.rdb |binary tna-1.2.2/tna/build/vignette.rds |binary tna-1.2.2/tna/data/engagement_mmm.rda |binary tna-1.2.2/tna/inst/doc/communities_and_cliques.html | 100 tna-1.2.2/tna/inst/doc/complete_tutorial.R | 8 tna-1.2.2/tna/inst/doc/complete_tutorial.Rmd | 8 tna-1.2.2/tna/inst/doc/complete_tutorial.html | 409 - tna-1.2.2/tna/inst/doc/grouped_sequences.R | 107 tna-1.2.2/tna/inst/doc/grouped_sequences.Rmd | 175 tna-1.2.2/tna/inst/doc/grouped_sequences.html | 1294 +++-- tna-1.2.2/tna/inst/doc/prepare_data.html | 115 tna-1.2.2/tna/inst/doc/tna.R | 5 tna-1.2.2/tna/inst/doc/tna.Rmd | 5 tna-1.2.2/tna/inst/doc/tna.html | 280 - tna-1.2.2/tna/man/betweenness_network.Rd | 7 tna-1.2.2/tna/man/cluster_data.Rd | 3 tna-1.2.2/tna/man/compare_sequences.Rd | 8 tna-1.2.2/tna/man/estimate_centrality_stability.Rd | 21 tna-1.2.2/tna/man/figures/README-centralitiesplot-1.svg | 3861 ++++++++-------- tna-1.2.2/tna/man/figures/README-tnaplot-1.svg | 1968 +++----- tna-1.2.2/tna/man/figures/README-tnaplot-2.svg | 1444 ++--- tna-1.2.2/tna/man/figures/README-unnamed-chunk-12-1.svg | 1968 +++----- tna-1.2.2/tna/man/figures/README-unnamed-chunk-14-1.svg | 411 - tna-1.2.2/tna/man/figures/README-unnamed-chunk-16-1.svg | 2772 ++++------- tna-1.2.2/tna/man/import_onehot.Rd | 5 tna-1.2.2/tna/man/plot.group_tna.Rd | 35 tna-1.2.2/tna/man/plot.group_tna_cliques.Rd | 4 tna-1.2.2/tna/man/plot.group_tna_communities.Rd | 4 tna-1.2.2/tna/man/plot.group_tna_permutation.Rd | 4 tna-1.2.2/tna/man/plot.tna.Rd | 73 tna-1.2.2/tna/man/plot.tna_cliques.Rd | 49 tna-1.2.2/tna/man/plot.tna_communities.Rd | 5 tna-1.2.2/tna/man/plot.tna_permutation.Rd | 15 tna-1.2.2/tna/man/plot.tna_sequence_comparison.Rd | 2 tna-1.2.2/tna/man/plot_associations.Rd | 6 tna-1.2.2/tna/man/plot_compare.Rd | 24 tna-1.2.2/tna/man/plot_compare.group_tna.Rd | 14 tna-1.2.2/tna/man/plot_model.Rd | 45 tna-1.2.2/tna/man/print.tna_sequence_comparison.Rd | 2 tna-1.2.2/tna/man/tna-package.Rd | 4 tna-1.2.2/tna/tests/testthat/test-check.R | 84 tna-1.2.2/tna/tests/testthat/test-clusters.R | 179 tna-1.2.2/tna/tests/testthat/test-data.R | 58 tna-1.2.2/tna/tests/testthat/test-groups.R | 7 tna-1.2.2/tna/tests/testthat/test-mmm.R | 20 tna-1.2.2/tna/tests/testthat/test-plot.R | 64 tna-1.2.2/tna/tests/testthat/test-print.R | 14 tna-1.2.2/tna/tests/testthat/test-simulate.R | 6 tna-1.2.2/tna/vignettes/articles/atna.Rmd | 10 tna-1.2.2/tna/vignettes/articles/ftna.Rmd | 14 tna-1.2.2/tna/vignettes/articles/new-docs.Rmd | 72 tna-1.2.2/tna/vignettes/complete_tutorial.Rmd | 8 tna-1.2.2/tna/vignettes/grouped_sequences.Rmd | 175 tna-1.2.2/tna/vignettes/tna.Rmd | 5 75 files changed, 8099 insertions(+), 9527 deletions(-)
More information about tidyOhdsiSolutions at CRAN
Permanent link
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version
of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now
maintained separately just for the calendaring subset). See the included file 'AUTHORS'
for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').
Author: Dirk Eddelbuettel [aut, cre] ,
QuantLib Authors [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between qlcal versions 0.1.0 dated 2026-02-18 and 0.1.1 dated 2026-04-15
ChangeLog | 12 +++++++++++ DESCRIPTION | 8 +++---- MD5 | 16 +++++++------- build/partial.rdb |binary inst/NEWS.Rd | 7 ++++++ src/ql/time/calendars/china.cpp | 16 +++++++++++++- src/ql/time/calendars/singapore.cpp | 16 ++++++++++++++ src/ql/time/calendars/singapore.hpp | 2 - src/ql/time/calendars/taiwan.cpp | 39 ++++++++++++++++++++++++++++++++++++ 9 files changed, 102 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-18 0.1.7
2023-05-28 0.1.6
2021-06-12 0.1.5
2021-02-17 0.1.4
Title: Simplicially Constrained Regression Models for Proportions
Description: Simplicially constrained regression models for proportions in both sides. The constraint is always that the betas are non-negative and sum to 1. References: Iverson S.J.., Field C., Bowen W.D. and Blanchard W. (2004) "Quantitative Fatty Acid Signature Analysis: A New Method of Estimating Predator Diets". Ecological Monographs, 74(2): 211-235. <doi:10.1890/02-4105>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between scpropreg versions 1.1 dated 2026-03-24 and 1.2 dated 2026-04-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 2 +- R/mpcls.R | 33 ++++++++++++++++++++------------- man/mkld.Rd | 4 +++- man/pcls.Rd | 8 ++++++-- man/scpropreg-package.Rd | 4 ++-- 7 files changed, 42 insertions(+), 29 deletions(-)
Title: Cite 'R' Packages on the Fly in 'R Markdown' and 'Quarto'
Description: References and cites 'R' and 'R' packages on the fly in 'R
Markdown' and 'Quarto'. 'pakret' provides a minimalist API that
generates preformatted citations for 'R' and 'R' packages, and adds
their references to a '.bib' file directly from within your document.
Author: Arnaud Gallou [aut, cre, cph]
Maintainer: Arnaud Gallou <arangacas@gmail.com>
Diff between pakret versions 0.3.0 dated 2025-12-13 and 0.3.1 dated 2026-04-15
DESCRIPTION | 8 +++--- MD5 | 44 ++++++++++++++++++------------------- NAMESPACE | 2 + NEWS.md | 12 ++++++++-- R/aaa.R | 15 +++++++++--- R/checkers.R | 9 ------- R/pakret-package.R | 5 ++++ R/pakret.R | 7 ----- R/pkrt-list.R | 29 +++++++++++++++++++----- R/pkrt-set.R | 38 +++++++++++++++++-------------- R/pkrt.R | 14 +++++------ R/utils-local.R | 2 - R/zzz.R | 20 ---------------- README.md | 12 +++++++++- man/pkrt.Rd | 12 +++++----- man/pkrt_list.Rd | 12 +++++----- man/pkrt_set.Rd | 14 ++++++++--- tests/testthat/_snaps/pkrt-list.md | 14 +++++++++++ tests/testthat/_snaps/pkrt.md | 2 - tests/testthat/helper.R | 2 - tests/testthat/test-pkrt-list.R | 18 +++++++++++++++ tests/testthat/test-pkrt-set.R | 15 ++++++++++-- tests/testthat/test-pkrt.R | 5 ++++ 23 files changed, 192 insertions(+), 119 deletions(-)
Title: Unmixing Model Framework
Description: Quantifies the provenance of sediments by applying a mixing model algorithm to end sediment mixtures based on a comprehensive characterization of the sediment sources. The 'fingerPro' model builds upon the foundational concept of using mass balance linear equations for sediment source quantification by incorporating several distinct technical advancements. It employs an optimization approach to normalize discrepancies in tracer ranges and minimize the objective function. Latin hypercube sampling is used to explore all possible combinations of source contributions (0-100%), mitigating the risk of local minima. Uncertainty in source estimates is quantified through a Monte Carlo routine, and the model includes additional metrics, such as the normalized error of the virtual mixture, to detect mathematical inconsistencies, non-physical solutions, and biases. A new linear variability propagation (LVP) method is also included to address and quantify potential bias in model outcomes, particula [...truncated...]
Author: Borja Latorre [aut, cre] ,
Leticia Gaspar [aut] ,
Ivan Lizaga [aut] ,
Leticia Palazon [aut] ,
Vince Q Vu [ctb],
Ana Navas [aut, fnd, ths]
Maintainer: Borja Latorre (Core Team) <borja.latorre@csic.es>
Diff between fingerPro versions 2.0 dated 2025-08-27 and 2.1 dated 2026-04-15
fingerPro-2.0/fingerPro/R/CTS_error.R |only fingerPro-2.0/fingerPro/R/CTS_error_2s.R |only fingerPro-2.0/fingerPro/R/CTS_error_3s.R |only fingerPro-2.0/fingerPro/R/CTS_error_4s.R |only fingerPro-2.0/fingerPro/R/CTS_error_5s.R |only fingerPro-2.0/fingerPro/R/CTS_seeds.R |only fingerPro-2.0/fingerPro/R/CTS_seeds_pairs.R |only fingerPro-2.0/fingerPro/R/CTS_seeds_quartets.R |only fingerPro-2.0/fingerPro/R/CTS_seeds_singles.R |only fingerPro-2.0/fingerPro/R/CTS_seeds_triplets.R |only fingerPro-2.0/fingerPro/R/least_squares.R |only fingerPro-2.0/fingerPro/inst/extdata/example_geo_3s_mean.csv |only fingerPro-2.0/fingerPro/inst/extdata/example_geo_3s_raw.csv |only fingerPro-2.0/fingerPro/man/CTS_error.Rd |only fingerPro-2.0/fingerPro/man/CTS_seeds.Rd |only fingerPro-2.1/fingerPro/DESCRIPTION | 50 - fingerPro-2.1/fingerPro/MD5 | 171 +++-- fingerPro-2.1/fingerPro/NAMESPACE | 9 fingerPro-2.1/fingerPro/NEWS.md |only fingerPro-2.1/fingerPro/R/CB_method.R | 6 fingerPro-2.1/fingerPro/R/CI.R | 13 fingerPro-2.1/fingerPro/R/CR.R | 23 fingerPro-2.1/fingerPro/R/CTS_explore.R |only fingerPro-2.1/fingerPro/R/CTS_explore_pairs.R |only fingerPro-2.1/fingerPro/R/CTS_explore_quartets.R |only fingerPro-2.1/fingerPro/R/CTS_explore_singles.R |only fingerPro-2.1/fingerPro/R/CTS_explore_triplets.R |only fingerPro-2.1/fingerPro/R/CTS_select.R |only fingerPro-2.1/fingerPro/R/CTS_select_2s.R |only fingerPro-2.1/fingerPro/R/CTS_select_3s.R |only fingerPro-2.1/fingerPro/R/CTS_select_4s.R |only fingerPro-2.1/fingerPro/R/CTS_select_5s.R |only fingerPro-2.1/fingerPro/R/DFA_test.R | 4 fingerPro-2.1/fingerPro/R/KW_test.R | 2 fingerPro-2.1/fingerPro/R/LDA_plot.R | 9 fingerPro-2.1/fingerPro/R/PCA_plot.R | 2 fingerPro-2.1/fingerPro/R/RcppExports.R | 35 - fingerPro-2.1/fingerPro/R/box_plot.R | 212 +++--- fingerPro-2.1/fingerPro/R/correlation_plot.R | 4 fingerPro-2.1/fingerPro/R/fingerPro-package.R | 103 --- fingerPro-2.1/fingerPro/R/functions.R | 312 ++++++---- fingerPro-2.1/fingerPro/R/ggbiplot.r | 2 fingerPro-2.1/fingerPro/R/individual_tracer_analysis.R | 34 - fingerPro-2.1/fingerPro/R/inputMixture.R | 2 fingerPro-2.1/fingerPro/R/inputSource.R | 2 fingerPro-2.1/fingerPro/R/plot_results.R | 2 fingerPro-2.1/fingerPro/R/range_test.R | 2 fingerPro-2.1/fingerPro/R/ternary_diagram.R | 42 + fingerPro-2.1/fingerPro/R/unmix.R | 38 - fingerPro-2.1/fingerPro/R/unmix_unconstrained.R | 15 fingerPro-2.1/fingerPro/R/unmix_unconstrained_lvp.R | 14 fingerPro-2.1/fingerPro/R/validate_results.R |only fingerPro-2.1/fingerPro/R/virtual_mixture.R |only fingerPro-2.1/fingerPro/R/write_results.R | 4 fingerPro-2.1/fingerPro/README.md |only fingerPro-2.1/fingerPro/build |only fingerPro-2.1/fingerPro/inst/CITATION |only fingerPro-2.1/fingerPro/inst/doc |only fingerPro-2.1/fingerPro/inst/extdata/example_geochemical_3s_mean.csv |only fingerPro-2.1/fingerPro/inst/extdata/example_geochemical_3s_raw.csv |only fingerPro-2.1/fingerPro/man/CB_method.Rd | 6 fingerPro-2.1/fingerPro/man/CI.Rd | 14 fingerPro-2.1/fingerPro/man/CR.Rd | 8 fingerPro-2.1/fingerPro/man/CTS_error_2s.Rd |only fingerPro-2.1/fingerPro/man/CTS_error_3s.Rd |only fingerPro-2.1/fingerPro/man/CTS_error_4s.Rd |only fingerPro-2.1/fingerPro/man/CTS_error_5s.Rd |only fingerPro-2.1/fingerPro/man/CTS_explore.Rd |only fingerPro-2.1/fingerPro/man/CTS_seeds_pairs.Rd |only fingerPro-2.1/fingerPro/man/CTS_seeds_quartets.Rd |only fingerPro-2.1/fingerPro/man/CTS_seeds_singles.Rd |only fingerPro-2.1/fingerPro/man/CTS_seeds_triplets.Rd |only fingerPro-2.1/fingerPro/man/CTS_select.Rd |only fingerPro-2.1/fingerPro/man/DFA_test.Rd | 3 fingerPro-2.1/fingerPro/man/KW_test.Rd | 1 fingerPro-2.1/fingerPro/man/LDA_plot.Rd | 8 fingerPro-2.1/fingerPro/man/PCA_plot.Rd | 2 fingerPro-2.1/fingerPro/man/averaged_dataset.Rd |only fingerPro-2.1/fingerPro/man/box_plot.Rd | 24 fingerPro-2.1/fingerPro/man/check_database.Rd | 57 - fingerPro-2.1/fingerPro/man/correlation_plot.Rd | 4 fingerPro-2.1/fingerPro/man/fingerPro.Rd | 103 --- fingerPro-2.1/fingerPro/man/ggbiplot.Rd | 1 fingerPro-2.1/fingerPro/man/individual_tracer_analysis.Rd | 8 fingerPro-2.1/fingerPro/man/inputMixture.Rd | 1 fingerPro-2.1/fingerPro/man/inputSource.Rd | 1 fingerPro-2.1/fingerPro/man/is_averaged.Rd |only fingerPro-2.1/fingerPro/man/is_isotopic.Rd |only fingerPro-2.1/fingerPro/man/least_squares_c.Rd |only fingerPro-2.1/fingerPro/man/plot_results.Rd | 2 fingerPro-2.1/fingerPro/man/range_test.Rd | 2 fingerPro-2.1/fingerPro/man/read_database.Rd |only fingerPro-2.1/fingerPro/man/select_tracers.Rd | 7 fingerPro-2.1/fingerPro/man/ternary_diagram.Rd | 31 fingerPro-2.1/fingerPro/man/triangles_random_c.Rd |only fingerPro-2.1/fingerPro/man/triangles_virtual_c.Rd |only fingerPro-2.1/fingerPro/man/unmix.Rd | 8 fingerPro-2.1/fingerPro/man/unmix_c.Rd |only fingerPro-2.1/fingerPro/man/unmix_c_lvp.Rd |only fingerPro-2.1/fingerPro/man/unmix_unconstrained.Rd |only fingerPro-2.1/fingerPro/man/unmix_unconstrained_lvp.Rd |only fingerPro-2.1/fingerPro/man/validate_results.Rd |only fingerPro-2.1/fingerPro/man/virtual_mixture.Rd | 8 fingerPro-2.1/fingerPro/man/write_results.Rd | 3 fingerPro-2.1/fingerPro/src/RcppExports.cpp | 41 - fingerPro-2.1/fingerPro/src/fingerprinting.cpp | 88 +- fingerPro-2.1/fingerPro/vignettes |only 107 files changed, 765 insertions(+), 778 deletions(-)
Title: Methods Based on the e-Closure Principle
Description: Implements several methods for False Discovery Rate control based on the e-Closure Principle,
in particular the Closed e-Benjamini-Hochberg and Closed Benjamini-Yekutieli procedures.
Author: Jelle Goeman [aut, cre]
Maintainer: Jelle Goeman <j.j.goeman@lumc.nl>
Diff between eClosure versions 0.9.3 dated 2026-03-17 and 0.9.4 dated 2026-04-15
ChangeLog | 5 ++- DESCRIPTION | 6 ++-- MD5 | 14 ++++++--- NAMESPACE | 1 R/RcppExports.R | 20 +++++++++++++ R/cSu_wrapper.R |only man/closedSu.Rd |only src/RcppExports.cpp | 69 +++++++++++++++++++++++++++++++++++++++++++++++ src/cSu.cpp |only tests/testthat/test_Su.R |only 10 files changed, 106 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-15 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-26 0.3-0.1
2014-04-25 0.3-0
2013-10-02 0.2-2
2012-04-17 0.2-1
2012-03-24 0.2-0
2011-09-27 0.1-6
2011-09-24 0.1-5
2011-08-11 0.1-4
2011-07-04 0.1-3
2011-04-11 0.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-09 2.2-3
2018-10-23 2.2-2
2015-10-20 2.2
2015-04-29 2.1-1
2015-01-20 2.1
2014-05-25 2.0-8
2013-04-14 2.0-7
2012-11-24 2.0-6
2012-09-06 2.0-5
2012-01-22 2.0-4
2012-01-17 2.0-3
2011-09-06 2.0-1
2011-08-08 2.0
2011-06-17 1.9
2011-06-04 1.8-9
2010-12-01 1.8-6
2010-11-18 1.8-5
2010-11-04 1.8-4
2010-10-26 1.8-3
2010-01-24 1.8-1
2010-01-08 1.8
2009-11-11 1.7
2009-06-18 1.5
2009-01-20 1.4
2008-11-06 1.3-5
2008-10-24 1.3-4
2008-09-05 1.3-3
2008-06-23 1.3-2
2008-06-16 1.3-1
2008-03-25 1.3
2008-02-21 1.2-1
2007-10-17 1.1-3
2007-08-14 1.1-1
2007-05-30 1.0-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-10 1.3.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-28 0.3.2
Title: High-Performance 'WebGl' Rendering for Package 'leaflet'
Description: Provides bindings to the 'Leaflet.glify' JavaScript library which extends the 'leaflet' JavaScript library to render large data in the browser using 'WebGl'.
Author: Tim Appelhans [cre, aut, cph] ,
Colin Fay [ctb] ,
Robert Plummer [ctb] ,
Kent Johnson [ctb],
Sebastian Gatscha [ctb],
Olivier Roy [ctb]
Maintainer: Tim Appelhans <tappelhans@tutamail.com>
Diff between leafgl versions 0.2.2 dated 2024-11-13 and 0.2.4 dated 2026-04-15
leafgl-0.2.2/leafgl/man/clearGlLayers.Rd |only leafgl-0.2.2/leafgl/man/removeGlPoints.Rd |only leafgl-0.2.2/leafgl/man/removeGlPolygons.Rd |only leafgl-0.2.2/leafgl/man/removeGlPolylines.Rd |only leafgl-0.2.4/leafgl/DESCRIPTION | 24 leafgl-0.2.4/leafgl/MD5 | 61 + leafgl-0.2.4/leafgl/NAMESPACE | 2 leafgl-0.2.4/leafgl/NEWS | 33 - leafgl-0.2.4/leafgl/NEWS.md | 33 - leafgl-0.2.4/leafgl/R/glify-helpers.R | 191 ++---- leafgl-0.2.4/leafgl/R/glify-lines.R | 235 ++++--- leafgl-0.2.4/leafgl/R/glify-points.R | 306 +++++----- leafgl-0.2.4/leafgl/R/glify-polygons.R | 214 +++--- leafgl-0.2.4/leafgl/R/glify-remove-clear.R | 33 - leafgl-0.2.4/leafgl/R/glify-shiny.R | 4 leafgl-0.2.4/leafgl/R/leafgl_package.R |only leafgl-0.2.4/leafgl/R/utils-color.R | 5 leafgl-0.2.4/leafgl/R/utils-popup.R | 2 leafgl-0.2.4/leafgl/inst/examples |only leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/GlifyUtils.js |only leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPoints.js | 86 -- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPointsSrc.js | 91 +- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPolygons.js | 104 +-- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPolygonsSrc.js | 78 +- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPolylines.js | 105 +-- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPolylinesSrc.js | 79 +- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/glify-browser.js | 11 leafgl-0.2.4/leafgl/man/addGlPoints.Rd | 126 ++-- leafgl-0.2.4/leafgl/man/leafgl-package.Rd |only leafgl-0.2.4/leafgl/man/makeColorMatrix.Rd | 3 leafgl-0.2.4/leafgl/man/remove.Rd |only leafgl-0.2.4/leafgl/tests/testthat/test-leafgl-addGlPoints.R | 12 leafgl-0.2.4/leafgl/tests/testthat/test-leafgl-addGlPolygons.R | 18 leafgl-0.2.4/leafgl/tests/testthat/test-leafgl-colors.R | 122 +-- leafgl-0.2.4/leafgl/tests/testthat/test-leafgl-popup.R | 194 +++--- leafgl-0.2.4/leafgl/tests/testthat/test-remove_clear.R | 1 36 files changed, 1161 insertions(+), 1012 deletions(-)
Title: Analysis and Visualization of Complex Networks
Description: Provides tools for the analysis, visualization, and manipulation
of dynamical, social (Saqr et al. (2024) <doi:10.1007/978-3-031-54464-4_10>) and
complex networks (Saqr et al. (2025) <doi:10.1145/3706468.3706513>). The package
supports multiple network formats and offers flexible tools for heterogeneous,
multi-layer, and hierarchical network analysis with simple syntax and
extensive toolset.
Author: Mohammed Saqr [aut, cph],
Sonsoles Lopez-Pernas [aut, cre, cph]
Maintainer: Sonsoles Lopez-Pernas <sonsoles.lopez@uef.fi>
Diff between cograph versions 2.0.0 dated 2026-03-31 and 2.1.1 dated 2026-04-15
cograph-2.0.0/cograph/inst/doc/input-formats.R |only cograph-2.0.0/cograph/inst/doc/input-formats.Rmd |only cograph-2.0.0/cograph/inst/doc/input-formats.html |only cograph-2.0.0/cograph/man/membership.cograph_communities.Rd |only cograph-2.0.0/cograph/man/modularity.cograph_communities.Rd |only cograph-2.0.0/cograph/man/splot.boot_glasso.Rd |only cograph-2.0.0/cograph/man/splot.net_bootstrap.Rd |only cograph-2.0.0/cograph/man/splot.net_permutation.Rd |only cograph-2.0.0/cograph/man/splot.netobject.Rd |only cograph-2.0.0/cograph/man/splot.wtna_mixed.Rd |only cograph-2.0.0/cograph/vignettes/articles/comparison-plots-demo.Rmd |only cograph-2.0.0/cograph/vignettes/articles/function-reference.Rmd |only cograph-2.0.0/cograph/vignettes/articles/network-structure-and-groups.Rmd |only cograph-2.0.0/cograph/vignettes/articles/plotting-tna-models.Rmd |only cograph-2.0.0/cograph/vignettes/articles/why-cograph.Rmd |only cograph-2.0.0/cograph/vignettes/input-formats.Rmd |only cograph-2.1.1/cograph/DESCRIPTION | 25 cograph-2.1.1/cograph/LICENSE | 4 cograph-2.1.1/cograph/MD5 | 491 +- cograph-2.1.1/cograph/NAMESPACE | 99 cograph-2.1.1/cograph/NEWS.md | 111 cograph-2.1.1/cograph/R/aaa-globals.R | 12 cograph-2.1.1/cograph/R/assortativity.R |only cograph-2.1.1/cograph/R/bipartite.R |only cograph-2.1.1/cograph/R/blob-helpers.R | 75 cograph-2.1.1/cograph/R/centrality-extended.R |only cograph-2.1.1/cograph/R/centrality.R | 1750 +++++++++- cograph-2.1.1/cograph/R/class-network.R | 3 cograph-2.1.1/cograph/R/cluster-metrics.R | 56 cograph-2.1.1/cograph/R/cograph.R | 2 cograph-2.1.1/cograph/R/communities.R | 248 - cograph-2.1.1/cograph/R/core-periphery.R |only cograph-2.1.1/cograph/R/edge-metrics.R |only cograph-2.1.1/cograph/R/fit-distribution.R |only cograph-2.1.1/cograph/R/from-qgraph.R | 43 cograph-2.1.1/cograph/R/input-parse.R | 17 cograph-2.1.1/cograph/R/motifs-api.R | 70 cograph-2.1.1/cograph/R/motifs-extract.R | 98 cograph-2.1.1/cograph/R/motifs.R | 134 cograph-2.1.1/cograph/R/network-summary.R | 732 +++- cograph-2.1.1/cograph/R/network-utils.R | 17 cograph-2.1.1/cograph/R/paths.R |only cograph-2.1.1/cograph/R/plot-bootstrap.R | 14 cograph-2.1.1/cograph/R/plot-chord.R | 5 cograph-2.1.1/cograph/R/plot-communities.R | 48 cograph-2.1.1/cograph/R/plot-compare.R | 7 cograph-2.1.1/cograph/R/plot-distributions.R |only cograph-2.1.1/cograph/R/plot-forest.R | 11 cograph-2.1.1/cograph/R/plot-htna-multi.R | 61 cograph-2.1.1/cograph/R/plot-htna.R | 1 cograph-2.1.1/cograph/R/plot-mcml.R | 52 cograph-2.1.1/cograph/R/plot-mlvar.R |only cograph-2.1.1/cograph/R/plot-nestimate.R | 187 - cograph-2.1.1/cograph/R/plot-permutation.R | 37 cograph-2.1.1/cograph/R/plot-simplicial.R | 60 cograph-2.1.1/cograph/R/plot-temporal.R |only cograph-2.1.1/cograph/R/rich-club.R |only cograph-2.1.1/cograph/R/simplify.R | 4 cograph-2.1.1/cograph/R/splot-nodes.R | 16 cograph-2.1.1/cograph/R/splot-params.R | 4 cograph-2.1.1/cograph/R/splot-polygons.R | 42 cograph-2.1.1/cograph/R/splot.R | 109 cograph-2.1.1/cograph/R/vulnerability.R |only cograph-2.1.1/cograph/R/zzz.R | 10 cograph-2.1.1/cograph/README.md | 24 cograph-2.1.1/cograph/build/vignette.rds |binary cograph-2.1.1/cograph/inst/WORDLIST |only cograph-2.1.1/cograph/inst/doc/introduction.R | 259 - cograph-2.1.1/cograph/inst/doc/introduction.Rmd | 527 +-- cograph-2.1.1/cograph/inst/doc/introduction.html | 1511 ++++++-- cograph-2.1.1/cograph/man/aggregate_duplicate_edges.Rd | 2 cograph-2.1.1/cograph/man/as_tna.Rd | 17 cograph-2.1.1/cograph/man/assortativity.Rd |only cograph-2.1.1/cograph/man/assortativity_attribute.Rd |only cograph-2.1.1/cograph/man/centrality.Rd | 121 cograph-2.1.1/cograph/man/centrality_average_distance.Rd |only cograph-2.1.1/cograph/man/centrality_barycenter.Rd |only cograph-2.1.1/cograph/man/centrality_bottleneck.Rd |only cograph-2.1.1/cograph/man/centrality_bridging.Rd |only cograph-2.1.1/cograph/man/centrality_brokerage_coordinator.Rd |only cograph-2.1.1/cograph/man/centrality_brokerage_gatekeeper.Rd |only cograph-2.1.1/cograph/man/centrality_brokerage_itinerant.Rd |only cograph-2.1.1/cograph/man/centrality_brokerage_liaison.Rd |only cograph-2.1.1/cograph/man/centrality_brokerage_representative.Rd |only cograph-2.1.1/cograph/man/centrality_centroid.Rd |only cograph-2.1.1/cograph/man/centrality_closeness_vitality.Rd |only cograph-2.1.1/cograph/man/centrality_clusterrank.Rd |only cograph-2.1.1/cograph/man/centrality_communicability.Rd |only cograph-2.1.1/cograph/man/centrality_communicability_betweenness.Rd |only cograph-2.1.1/cograph/man/centrality_cross_clique.Rd |only cograph-2.1.1/cograph/man/centrality_dangalchev.Rd |only cograph-2.1.1/cograph/man/centrality_decay.Rd |only cograph-2.1.1/cograph/man/centrality_diversity.Rd |only cograph-2.1.1/cograph/man/centrality_dmnc.Rd |only cograph-2.1.1/cograph/man/centrality_effective_size.Rd |only cograph-2.1.1/cograph/man/centrality_entropy.Rd |only cograph-2.1.1/cograph/man/centrality_expected.Rd |only cograph-2.1.1/cograph/man/centrality_flow_betweenness.Rd |only cograph-2.1.1/cograph/man/centrality_gateway.Rd |only cograph-2.1.1/cograph/man/centrality_generalized_closeness.Rd |only cograph-2.1.1/cograph/man/centrality_gilschmidt.Rd |only cograph-2.1.1/cograph/man/centrality_harary.Rd |only cograph-2.1.1/cograph/man/centrality_hubbell.Rd |only cograph-2.1.1/cograph/man/centrality_information.Rd |only cograph-2.1.1/cograph/man/centrality_integration.Rd |only cograph-2.1.1/cograph/man/centrality_katz.Rd |only cograph-2.1.1/cograph/man/centrality_lac.Rd |only cograph-2.1.1/cograph/man/centrality_leaderrank.Rd |only cograph-2.1.1/cograph/man/centrality_lin.Rd |only cograph-2.1.1/cograph/man/centrality_lobby.Rd |only cograph-2.1.1/cograph/man/centrality_local_bridging.Rd |only cograph-2.1.1/cograph/man/centrality_markov.Rd |only cograph-2.1.1/cograph/man/centrality_mnc.Rd |only cograph-2.1.1/cograph/man/centrality_pairwisedis.Rd |only cograph-2.1.1/cograph/man/centrality_participation.Rd |only cograph-2.1.1/cograph/man/centrality_prestige_domain.Rd |only cograph-2.1.1/cograph/man/centrality_prestige_domain_proximity.Rd |only cograph-2.1.1/cograph/man/centrality_radiality.Rd |only cograph-2.1.1/cograph/man/centrality_random_walk.Rd |only cograph-2.1.1/cograph/man/centrality_reaching_local.Rd |only cograph-2.1.1/cograph/man/centrality_residual_closeness.Rd |only cograph-2.1.1/cograph/man/centrality_salsa.Rd |only cograph-2.1.1/cograph/man/centrality_semilocal.Rd |only cograph-2.1.1/cograph/man/centrality_stress.Rd |only cograph-2.1.1/cograph/man/centrality_topological_coefficient.Rd |only cograph-2.1.1/cograph/man/centrality_wiener.Rd |only cograph-2.1.1/cograph/man/centrality_within_module_z.Rd |only cograph-2.1.1/cograph/man/centralization.Rd |only cograph-2.1.1/cograph/man/cograph-package.Rd | 1 cograph-2.1.1/cograph/man/communities.Rd | 17 cograph-2.1.1/cograph/man/community_edge_betweenness.Rd | 2 cograph-2.1.1/cograph/man/community_fast_greedy.Rd | 2 cograph-2.1.1/cograph/man/community_leading_eigenvector.Rd | 2 cograph-2.1.1/cograph/man/community_louvain.Rd | 4 cograph-2.1.1/cograph/man/community_optimal.Rd | 2 cograph-2.1.1/cograph/man/community_spinglass.Rd | 2 cograph-2.1.1/cograph/man/core_periphery.Rd |only cograph-2.1.1/cograph/man/degree_distribution.Rd | 78 cograph-2.1.1/cograph/man/detect_duplicate_edges.Rd | 2 cograph-2.1.1/cograph/man/dispersion.Rd |only cograph-2.1.1/cograph/man/dot-edge_keys.Rd |only cograph-2.1.1/cograph/man/dot-psych_style_defaults.Rd |only cograph-2.1.1/cograph/man/dot-resolve_weights.Rd | 2 cograph-2.1.1/cograph/man/dot-wrap_communities.Rd | 2 cograph-2.1.1/cograph/man/draw_donut_node_base.Rd | 2 cograph-2.1.1/cograph/man/draw_polygon_donut_node_base.Rd | 2 cograph-2.1.1/cograph/man/edge_centrality.Rd | 25 cograph-2.1.1/cograph/man/edge_reciprocity.Rd |only cograph-2.1.1/cograph/man/estrada_index.Rd |only cograph-2.1.1/cograph/man/extract_motifs.Rd | 44 cograph-2.1.1/cograph/man/figures/README-donuts-1.jpeg |binary cograph-2.1.1/cograph/man/figures/README-tna-plot-1.jpeg |binary cograph-2.1.1/cograph/man/fit_degree_distribution.Rd |only cograph-2.1.1/cograph/man/from_tna.Rd | 2 cograph-2.1.1/cograph/man/get_donut_base_vertices.Rd | 1 cograph-2.1.1/cograph/man/group_centrality.Rd |only cograph-2.1.1/cograph/man/is_bipartite.Rd |only cograph-2.1.1/cograph/man/k_shortest_paths.Rd |only cograph-2.1.1/cograph/man/membership.Rd |only cograph-2.1.1/cograph/man/motif_census.Rd | 3 cograph-2.1.1/cograph/man/motifs.Rd | 60 cograph-2.1.1/cograph/man/neighborhood_overlap.Rd |only cograph-2.1.1/cograph/man/network_summary.Rd | 2 cograph-2.1.1/cograph/man/plot-mlvar.Rd |only cograph-2.1.1/cograph/man/plot.cograph_core_periphery.Rd |only cograph-2.1.1/cograph/man/plot.cograph_degree_fit.Rd |only cograph-2.1.1/cograph/man/plot.cograph_motif_analysis.Rd | 58 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cograph-2.1.1/cograph/man/shortest_paths.Rd |only cograph-2.1.1/cograph/man/simmelian_strength.Rd |only cograph-2.1.1/cograph/man/splot.Rd | 163 cograph-2.1.1/cograph/man/splot.tna_bootstrap.Rd | 9 cograph-2.1.1/cograph/man/subdivide_polygon.Rd |only cograph-2.1.1/cograph/man/subgraphs.Rd | 7 cograph-2.1.1/cograph/man/trophic_incoherence.Rd |only cograph-2.1.1/cograph/man/vulnerability.Rd |only cograph-2.1.1/cograph/tests/testthat/helper-test-utils.R | 18 cograph-2.1.1/cograph/tests/testthat/test-assortativity.R |only cograph-2.1.1/cograph/tests/testthat/test-audit-fixes.R |only cograph-2.1.1/cograph/tests/testthat/test-centrality-batch3.R |only cograph-2.1.1/cograph/tests/testthat/test-centrality-equivalence-report.R |only cograph-2.1.1/cograph/tests/testthat/test-centrality-extended.R |only cograph-2.1.1/cograph/tests/testthat/test-centrality-zoo.R |only cograph-2.1.1/cograph/tests/testthat/test-coverage-100pct-final.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-100pct-v2.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-100pct.R | 27 cograph-2.1.1/cograph/tests/testthat/test-coverage-aes-edges-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-aes-nodes-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-centrality-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-class-layout-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-class-network-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-class-network-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-cluster-metrics-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-cluster-metrics-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-cograph-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-cograph-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-communities-40.R | 101 cograph-2.1.1/cograph/tests/testthat/test-coverage-communities-41.R | 78 cograph-2.1.1/cograph/tests/testthat/test-coverage-from-qgraph-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-igraph-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-igraph-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-parse-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-qgraph-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-statnet-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-tna-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-circle-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-gephi-fr-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-groups-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-groups-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-oval-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-registry-40.R | 2 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cograph-2.1.1/cograph/tests/testthat/test-coverage-output-save-41.R | 20 cograph-2.1.1/cograph/tests/testthat/test-coverage-output-save-43.R | 4 cograph-2.1.1/cograph/tests/testthat/test-coverage-palettes-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-bootstrap-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-compare-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-heatmap-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-hon-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-htna-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-htna-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-htna-multi-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-htna-multi-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-mcml-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-mcml-41.R | 2 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cograph-2.1.1/cograph/tests/testthat/test-coverage-round6.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-round7.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-scale-constants-43.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-shapes-registry-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-shapes-registry-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-shapes-svg-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-sonplot-qgraph-geometry-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-arrows-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-edges-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-geometry-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-labels-40.R | 2 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cograph-2.1.1/cograph/tests/testthat/test-equiv-communities.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-disparity.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-edge-centrality.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-network-summary.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-robustness.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-standalone-measures.R |only cograph-2.1.1/cograph/tests/testthat/test-integer-weight-labels.R |only cograph-2.1.1/cograph/tests/testthat/test-motifs-equivalence.R | 36 cograph-2.1.1/cograph/tests/testthat/test-network-summary.R | 111 cograph-2.1.1/cograph/tests/testthat/test-plot-chord.R | 5 cograph-2.1.1/cograph/tests/testthat/test-plot-mlvar.R |only cograph-2.1.1/cograph/tests/testthat/test-rich-club-equivalence.R |only cograph-2.1.1/cograph/tests/testthat/test-tier2-cross-package.R |only cograph-2.1.1/cograph/tests/testthat/test-tier2-equivalence.R |only cograph-2.1.1/cograph/tests/testthat/test-tier2-features.R |only cograph-2.1.1/cograph/tests/testthat/test-tna-temporal.R | 2 cograph-2.1.1/cograph/vignettes/articles/1_cograph-tutorial-plotting.qmd |only cograph-2.1.1/cograph/vignettes/articles/2_why-cograph.Rmd |only cograph-2.1.1/cograph/vignettes/articles/3_plotting-tna-models.Rmd |only cograph-2.1.1/cograph/vignettes/articles/bootstrap-forest.Rmd |only cograph-2.1.1/cograph/vignettes/articles/cograph-tutorial-communities.qmd |only cograph-2.1.1/cograph/vignettes/articles/cograph-tutorial-nestimate.qmd |only cograph-2.1.1/cograph/vignettes/articles/mcml-examples.Rmd | 2 cograph-2.1.1/cograph/vignettes/articles/qgraph-to-splot.Rmd |only cograph-2.1.1/cograph/vignettes/introduction.Rmd | 527 +-- 319 files changed, 6774 insertions(+), 2120 deletions(-)
Title: Extracts Risk Neutral Densities of Prices, Money Market Rates
and Government Bond Yields from Fixed Income Options Prices
Description: Provides with parametric risk neutral densities and cumulative densities for futures prices on fixed-income products. It relies on options on Short Term Interest Rate futures contracts or options on government bond futures contracts. It models the price of the underlying asset as a mixture of either two or three lognormal densities. It also offers new functions which provide with risk neutral densities and cumulative densities of the money market rate or the government bond yield inferred from the futures contract's price, using the density of the futures price. The package leverages on the works of Melick, W. R. and Thomas, C. P. (1997) <doi:10.2307/2331318> and B. Bahra (1998) <doi:10.2139/ssrn.77429>.
Author: William Arrata [aut, cre]
Maintainer: William Arrata <william.arrata@gmail.com>
Diff between yrnd versions 0.1.1 dated 2026-03-15 and 0.1.2 dated 2026-04-15
DESCRIPTION | 10 MD5 | 36 NAMESPACE | 2 R/bond_future_charac_bbg.R | 2 R/bond_future_price.R | 16 R/ctd_bond_yield.R | 22 R/globals.R | 3 R/option_prices_bbg.R |only R/stir_future_price.R | 15 R/stir_rate.R | 54 inst/doc/yrnd_functions.R | 117 inst/doc/yrnd_functions.Rmd | 132 inst/doc/yrnd_functions.html |54878 +++++++++++++++++++++++++++++++++++++++++- man/bond_future_charac_bbg.Rd | 2 man/bond_future_price.Rd | 4 man/ctd_bond_yield.Rd | 4 man/option_prices_bbg.Rd |only man/stir_future_price.Rd | 4 man/stir_rate.Rd | 8 vignettes/yrnd_functions.Rmd | 132 20 files changed, 55311 insertions(+), 130 deletions(-)
Title: Rendering Font into 'data.frame'
Description: Extract glyph information from font data, and translate the
outline curves to flattened paths or tessellated polygons. The converted
data is returned as a 'data.frame' in easy-to-plot format.
Author: Hiroaki Yutani [aut, cre] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between string2path versions 0.3.0 dated 2026-04-13 and 0.3.1 dated 2026-04-15
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ configure | 8 ++++++++ src/Makevars.in | 7 ++++++- 5 files changed, 27 insertions(+), 8 deletions(-)
Title: Get XKCD Comic from R
Description: Visualize your favorite XKCD comic strip directly from R.
Includes full-text search with BM25 ranking and semantic similarity search
via local 'GloVe' embeddings, powered by a local 'DuckDB' cache.
Author: Paolo Sonego [aut, cph, cre],
Mikko Korpela [aut]
Maintainer: Paolo Sonego <paolo.sonego@gmail.com>
Diff between RXKCD versions 1.9.2 dated 2020-02-24 and 2.0.1 dated 2026-04-15
RXKCD-1.9.2/RXKCD/inst |only RXKCD-1.9.2/RXKCD/man/saveConfig.Rd |only RXKCD-2.0.1/RXKCD/DESCRIPTION | 40 + RXKCD-2.0.1/RXKCD/MD5 | 17 RXKCD-2.0.1/RXKCD/NAMESPACE | 14 RXKCD-2.0.1/RXKCD/R/getXKCD.R | 699 +++++++++++++++++++--------------- RXKCD-2.0.1/RXKCD/README.md | 48 +- RXKCD-2.0.1/RXKCD/man/getXKCD.Rd | 58 -- RXKCD-2.0.1/RXKCD/man/searchXKCD.Rd | 30 - RXKCD-2.0.1/RXKCD/man/similarXKCD.Rd |only RXKCD-2.0.1/RXKCD/man/updateConfig.Rd | 17 11 files changed, 518 insertions(+), 405 deletions(-)
Title: Phylogenetic Tree Models and the Power of Tree Shape Statistics
Description: The first goal of this package is to provide a multitude of tree models,
i.e., functions that generate rooted binary trees with a given number of leaves.
Second, the package allows for an easy evaluation and comparison of tree shape
statistics by estimating their power to differentiate between different tree models.
Please note that this R package was developed alongside the manuscript
'Tree balance in phylogenetic models' by
S. J. Kersting, K. Wicke, and M. Fischer (2025) <doi:10.1098/rstb.2023.0303>,
which provides further background and the respective mathematical definitions.
This project was supported by the project ArtIGROW, which is a part of the
WIR!-Alliance ArtIFARM – Artificial Intelligence in Farming funded by the
German Federal Ministry of Education and Research (No. 03WIR4805).
Author: Sophie Kersting [aut, cre] ,
Kristina Wicke [aut] ,
Mareike Fischer [aut]
Maintainer: Sophie Kersting <sophie.kersting@uni-greifswald.de>
Diff between poweRbal versions 0.0.1.1 dated 2024-08-16 and 0.1.0 dated 2026-04-15
DESCRIPTION | 27 - MD5 | 96 ++-- NAMESPACE | 76 +-- R/poweRbal_data-methods.R | 91 +--- R/powerCompare.R | 191 +++++---- R/powerCompute.R | 21 - R/powerData.R | 279 ++++++------- R/powerRegAcc.R | 771 ++++++++++++++++++++++++-------------- R/powerShow.R | 36 - R/reenumNodes.R | 366 +++++++++--------- R/tmAldousBeta.R | 19 R/tmAll.R | 244 ++++-------- R/tmAltBirthDeath.R | 118 +++-- R/tmBISSE.R | 90 +++- R/tmComb.R | 9 R/tmDensity.R | 148 ++++--- R/tmETM.R | 2 R/tmFordsAlpha.R | 19 R/tmGFB.R | 2 R/tmGrowNoExtDT.R | 465 ++++++++++++---------- R/tmMB.R | 2 R/tmPDA.R | 2 R/tmYule.R | 2 R/tssGetInfo.R | 341 ++++++++-------- R/tssInfo.R | 448 +++++++++++----------- inst/CITATION | 22 - man/generateTrees.Rd | 296 +++++++------- man/poweRbal_data-plot.Rd | 210 +++++----- man/poweRbal_data-printsummary.Rd | 126 +++--- man/powerCompare.Rd | 360 +++++++++-------- man/powerCompute.Rd | 100 ++-- man/powerData.Rd | 154 +++---- man/powerRegAcc.Rd | 452 +++++++++++----------- man/powerShow.Rd | 66 +-- man/reenumNodes.Rd | 94 ++-- man/tmAldous.Rd | 102 ++--- man/tmAltBirthDeath.Rd | 114 +++-- man/tmBiSSE.Rd | 151 +++---- man/tmComb.Rd | 64 +-- man/tmDensity.Rd | 112 +++-- man/tmETM.Rd | 74 +-- man/tmFord.Rd | 108 ++--- man/tmGFB.Rd | 66 +-- man/tmGrowNoExtDT.Rd | 410 ++++++++++---------- man/tmMB.Rd | 66 +-- man/tmPDA.Rd | 78 +-- man/tmYule.Rd | 82 ++-- man/tssGetInfo.Rd | 186 ++++----- man/tssInfo.Rd | 100 ++-- 49 files changed, 3903 insertions(+), 3555 deletions(-)
Title: Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data. In
particular representation, manipulation, rate estimation and
simulation for multistate data - the Lexis suite of functions, which
includes interfaces to 'mstate', 'etm' and 'cmprsk' packages.
Contains functions for Age-Period-Cohort and Lee-Carter modeling and
a function for interval censored data. Has functions for extracting
and manipulating parameter estimates and predicted values (ci.lin
and its cousins), as well as a number of epidemiological data sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.64 dated 2026-03-26 and 2.65 dated 2026-04-15
Epi-2.64/Epi/R/summary.Lexis.r |only Epi-2.64/Epi/inst/doc/index.html |only Epi-2.64/Epi/vignettes/01flup-Ieff.pdf |only Epi-2.64/Epi/vignettes/01flup-IeffR.pdf |only Epi-2.64/Epi/vignettes/01flup-box1.pdf |only Epi-2.64/Epi/vignettes/01flup-box4.pdf |only Epi-2.64/Epi/vignettes/01flup-dmL1.pdf |only Epi-2.64/Epi/vignettes/01flup-dmL2.pdf |only Epi-2.64/Epi/vignettes/01flup-dur-int-RR.pdf |only Epi-2.64/Epi/vignettes/01flup-dur-int.pdf |only Epi-2.64/Epi/vignettes/01flup-ins-time.pdf |only Epi-2.64/Epi/vignettes/01flup-mbox.pdf |only Epi-2.64/Epi/vignettes/01flup-mboxr.pdf |only Epi-2.64/Epi/vignettes/01flup-pr-a.pdf |only Epi-2.64/Epi/vignettes/01flup-sep-HR.pdf |only Epi-2.64/Epi/vignettes/01flup-sep-mort.pdf |only Epi-2.64/Epi/vignettes/01flup.R |only Epi-2.64/Epi/vignettes/01flup.pdf |only Epi-2.64/Epi/vignettes/02addLexis.R |only Epi-2.64/Epi/vignettes/02addLexis.pdf |only Epi-2.64/Epi/vignettes/03crisk-Sr1.pdf |only Epi-2.64/Epi/vignettes/03crisk-Sr2.pdf |only Epi-2.64/Epi/vignettes/03crisk-boxes.pdf |only Epi-2.64/Epi/vignettes/03crisk-boxes4.pdf |only Epi-2.64/Epi/vignettes/03crisk-boxes5.pdf |only Epi-2.64/Epi/vignettes/03crisk-cR.pdf |only Epi-2.64/Epi/vignettes/03crisk-crates.pdf |only Epi-2.64/Epi/vignettes/03crisk-difrat.pdf |only Epi-2.64/Epi/vignettes/03crisk-difratx.pdf |only Epi-2.64/Epi/vignettes/03crisk-rates-ci.pdf |only Epi-2.64/Epi/vignettes/03crisk-rates-l.pdf |only Epi-2.64/Epi/vignettes/03crisk-rates.pdf |only Epi-2.64/Epi/vignettes/03crisk-stack-ci.pdf |only Epi-2.64/Epi/vignettes/03crisk-stack.pdf |only Epi-2.64/Epi/vignettes/03crisk.R |only Epi-2.64/Epi/vignettes/03crisk.pdf |only Epi-2.64/Epi/vignettes/04simLexis-boxes.pdf |only Epi-2.64/Epi/vignettes/04simLexis-comp-0.pdf |only Epi-2.64/Epi/vignettes/04simLexis-mort-int.pdf |only Epi-2.64/Epi/vignettes/04simLexis-pstate0.pdf |only Epi-2.64/Epi/vignettes/04simLexis-pstatex.pdf |only Epi-2.64/Epi/vignettes/04simLexis-pstatey.pdf |only Epi-2.64/Epi/vignettes/04simLexis.R |only Epi-2.64/Epi/vignettes/04simLexis.pdf |only Epi-2.64/Epi/vignettes/05yll-imm.pdf |only Epi-2.64/Epi/vignettes/05yll-states.pdf |only Epi-2.64/Epi/vignettes/05yll-sus.pdf |only Epi-2.64/Epi/vignettes/05yll-tot.pdf |only Epi-2.64/Epi/vignettes/05yll.R |only Epi-2.64/Epi/vignettes/05yll.pdf |only Epi-2.65/Epi/CHANGES | 30 +---- Epi-2.65/Epi/DESCRIPTION | 8 - Epi-2.65/Epi/MD5 | 94 ++++------------ Epi-2.65/Epi/NAMESPACE | 1 Epi-2.65/Epi/R/adtte2Lexis.R |only Epi-2.65/Epi/R/overlap.Lexis.R | 1 Epi-2.65/Epi/R/stack.Lexis.R | 13 +- Epi-2.65/Epi/R/summary.Lexis.R |only Epi-2.65/Epi/inst/doc/00Index.html |only Epi-2.65/Epi/inst/doc/01flup.pdf |binary Epi-2.65/Epi/inst/doc/02addLexis.pdf |binary Epi-2.65/Epi/inst/doc/03crisk.R | 74 ++++++------- Epi-2.65/Epi/inst/doc/03crisk.pdf |binary Epi-2.65/Epi/inst/doc/04simLexis.R | 4 Epi-2.65/Epi/inst/doc/04simLexis.pdf |binary Epi-2.65/Epi/inst/doc/05yll.pdf |binary Epi-2.65/Epi/man/adtte2Lexis.Rd |only Epi-2.65/Epi/man/summary.Lexis.Rd | 38 ++++-- Epi-2.65/Epi/vignettes/01flup.tex | 10 - Epi-2.65/Epi/vignettes/02addLexis.tex | 16 +- Epi-2.65/Epi/vignettes/03crisk.rnw | 17 +-- Epi-2.65/Epi/vignettes/03crisk.tex | 140 ++++++++++++------------- Epi-2.65/Epi/vignettes/04simLexis.rnw | 20 +-- Epi-2.65/Epi/vignettes/04simLexis.tex | 56 +++++----- Epi-2.65/Epi/vignettes/05yll.tex | 10 - 75 files changed, 251 insertions(+), 281 deletions(-)
Title: Bayesian Spectral Inference for Time Series
Description: Implementations of Bayesian parametric, nonparametric and semiparametric procedures for univariate and multivariate time series. The package is based on the methods presented in C. Kirch et al (2018) <doi:10.1214/18-BA1126>, A. Meier (2018) <https://opendata.uni-halle.de//handle/1981185920/13470> and Y. Tang et al (2025) <doi:10.1080/01621459.2025.2594191>. It was supported by DFG grants KI 1443/3-1 and KI 1443/3-2.
Author: Alexander Meier [aut],
Claudia Kirch [aut],
Matthew C. Edwards [aut],
Renate Meyer [aut, cre],
Yifu Tang [aut]
Maintainer: Renate Meyer <renate.meyer@auckland.ac.nz>
Diff between beyondWhittle versions 1.3.0 dated 2024-11-25 and 1.3.1 dated 2026-04-15
DESCRIPTION | 12 ++-- MD5 | 22 ++++---- R/dynamicWhittle_MCMC_zigzag.R | 6 +- R/dynamicWhittle_miscellanea_zigzag.R | 6 +- R/dynamicWhittle_prior_and_mcmc_params.R | 81 +++++++++++++------------------ man/bdp_dw_bayes_factor_k1.Rd | 8 +-- man/bdp_dw_mcmc.Rd | 6 +- man/beyondWhittle-package.Rd | 8 +-- man/gibbs_bdp_dw.Rd | 8 +-- man/local_moving_FT_zigzag.Rd | 6 +- man/psd_tvarma12.Rd | 35 ++++++------- man/sim_tvarma12.Rd | 30 +++-------- 12 files changed, 101 insertions(+), 127 deletions(-)
Title: Classification and Scoring of U.S. County and ZIP Code Rurality
Description: Provides USDA Rural-Urban Continuum Codes (RUCC 2023),
Rural-Urban Commuting Area codes (RUCA 2020), and a composite rurality
score for all U.S. counties. Functions enable lookup by FIPS code,
ZIP code, or county name, and easy merging with existing datasets.
Data sources include the USDA Economic Research Service, U.S. Census
Bureau American Community Survey, and Census TIGER/Line shapefiles.
Author: Cameron Wimpy [aut, cre]
Maintainer: Cameron Wimpy <cwimpy@astate.edu>
Diff between rurality versions 0.1.0 dated 2026-04-10 and 0.1.1 dated 2026-04-15
DESCRIPTION | 6 ++--- MD5 | 11 ++++++---- NEWS.md |only README.md | 17 +++++++++++++++- data/county_rurality.rda |binary inst/doc/rurality.html | 48 +++++++++++++++++++++++------------------------ man/figures |only 7 files changed, 50 insertions(+), 32 deletions(-)
Title: Gathering Metadata About Publications, Grants, Clinical Trials
from 'PubMed' Database
Description: A set of tools to extract bibliographic content from 'PubMed' database
using 'NCBI' REST API <https://www.ncbi.nlm.nih.gov/home/develop/api/>.
It includes functions to search, download, and convert 'PubMed' bibliographic
records into data frames compatible with the 'bibliometrix' package.
Features include programmatic query building, batch downloading by PMID,
citation enrichment via 'NCBI' E-Link, and robust error handling with
automatic retry logic.
Author: Massimo Aria [aut, cre]
Maintainer: Massimo Aria <massimo.aria@gmail.com>
Diff between pubmedR versions 0.0.3 dated 2020-07-09 and 1.0.0 dated 2026-04-15
DESCRIPTION | 23 + MD5 | 42 ++- NAMESPACE | 6 NEWS | 93 +++++++ R/pmApi2df.R | 333 +++++++++++++++------------- R/pmApiRequest.R | 205 +++++++++-------- R/pmCitedBy.R |only R/pmCollect.R |only R/pmFetchById.R |only R/pmQueryBuild.R |only R/pmQueryTotalCount.R | 119 +++++----- R/utils.R |only build/vignette.rds |binary inst/doc/A_Brief_Example.Rmd | 459 ++++++++++++++++---------------------- inst/doc/A_Brief_Example.html | 497 ++++++++++++++++++++---------------------- man/pmApi2df.Rd | 4 man/pmApiRequest.Rd | 23 + man/pmCitedBy.Rd |only man/pmCollect.Rd |only man/pmEnrichCitations.Rd |only man/pmFetchById.Rd |only man/pmQueryBuild.Rd |only man/pmQueryTotalCount.Rd | 13 - man/pmReferences.Rd |only tests |only vignettes/A_Brief_Example.Rmd | 459 ++++++++++++++++---------------------- 26 files changed, 1149 insertions(+), 1127 deletions(-)
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles, random deviates,
and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae
parameterised by Cholesky factors of covariance or precision matrices are implemented
for interval-censored and exact data, or a mix thereof. Score functions for these
log-likelihoods are available. A class representing multiple lower triangular matrices
and corresponding methods are part of this package.
Author: Alan Genz [aut],
Frank Bretz [aut],
Tetsuhisa Miwa [aut],
Xuefei Mi [aut],
Friedrich Leisch [ctb],
Fabian Scheipl [ctb],
Bjoern Bornkamp [ctb] ,
Martin Maechler [ctb] ,
Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mvtnorm versions 1.3-6 dated 2026-03-15 and 1.3-7 dated 2026-04-15
DESCRIPTION | 8 MD5 | 52 NAMESPACE | 5 R/interface.R | 324 +++-- R/lpmvnorm.R | 151 +- R/ltMatrices.R | 157 +- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 20 inst/doc/MVT_Rnews.R | 2 inst/doc/MVT_Rnews.pdf |binary inst/doc/lmvnorm_src.R | 101 - inst/doc/lmvnorm_src.Rnw | 2571 +++++++++++++++++++++++----------------- inst/doc/lmvnorm_src.pdf |binary man/lpmvnorm.Rd | 18 src/lpmvnorm.c | 44 tests/bugfix-tests.Rout.save | 4 tests/dmvnorm-Ex.R | 102 + tests/dpmvnorm-Ex.R |only tests/plmvnorm-Ex.Rout.save | 4 tests/pmvnorm-Ex.R |only tests/regtest-TVPACK.Rout.save | 4 tests/regtest-scores.Rout.save | 4 tests/regtest_coef.R |only tests/regtest_coef.Rout.save |only tests/slpmvnorm.R | 16 tests/test-noisy-root.Rout.save | 4 vignettes/lmvnorm_src.Rnw | 2571 +++++++++++++++++++++++----------------- vignettes/lmvnorm_src.Rout.save | 137 +- 29 files changed, 3800 insertions(+), 2499 deletions(-)
Title: Marginal Modeling for Exposure Data with Values Below the LOD
Description: Functions of marginal mean and quantile regression models are used to analyze environmental exposure and biomonitoring data with repeated measurements and non-detects (i.e., values below the limit of detection (LOD)), as well as longitudinal exposure data that include non-detects and time-dependent covariates. For more details see Chen IC, Bertke SJ, Curwin BD (2021) <doi:10.1038/s41370-021-00345-1>, Chen IC, Bertke SJ, Estill CF (2024) <doi:10.1038/s41370-024-00640-7>, Chen IC, Bertke SJ, Dahm MM (2024) <doi:10.1093/annweh/wxae068>, and Chen IC (2025) <doi:10.1038/s41370-025-00752-8>.
Author: I-Chen Chen [cre, aut] ,
Philip Westgate [ctb],
Liya Fu [ctb]
Maintainer: I-Chen Chen <flecsh@gmail.com>
Diff between marlod versions 0.2.2 dated 2025-10-18 and 0.2.3 dated 2026-04-15
DESCRIPTION | 10 ++--- MD5 | 6 +-- NEWS.md | 69 ++++++++++++++++++++------------------- inst/doc/marlod.html | 90 +++++++++++++++++++++++++-------------------------- 4 files changed, 90 insertions(+), 85 deletions(-)
Title: Diagnostics for OMOP Common Data Model Drug Records
Description: Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Ger Inberg [aut, cre] ,
Edward Burn [aut] ,
Theresa Burkard [aut] ,
Yuchen Guo [ctb] ,
Marti Catala [ctb] ,
Mike Du [ctb] ,
Xintong Li [ctb] ,
Ross Williams [ctb] ,
Erasmus MC [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between DrugExposureDiagnostics versions 1.1.6 dated 2026-02-16 and 1.1.7 dated 2026-04-15
DESCRIPTION | 6 - MD5 | 24 +++---- NEWS.md | 4 + R/dataPlotPanel.R | 62 ++++++++++++-------- R/executeChecks.R | 2 R/obscureCounts.R | 5 + R/shinyApp.R | 2 R/summariseChecks.R | 22 +++++-- inst/doc/DrugSig.html | 2 inst/doc/IntroductionToDrugExposureDiagnostics.html | 6 - man/summariseChecks.Rd | 5 + tests/testthat/test-SummariseChecks.R | 21 +++++- tests/testthat/test-SyntheaSqlServer.R | 2 13 files changed, 106 insertions(+), 57 deletions(-)
More information about DrugExposureDiagnostics at CRAN
Permanent link
Title: Header-Only 'C++' and 'R' Interface
Description: Provides a header only, 'C++' interface to 'R' with enhancements over 'cpp11'. Enforces copy-on-write
semantics consistent with 'R' behavior. Offers native support for ALTREP objects, 'UTF-8' string handling, modern
'C++11' features and idioms, and reduced memory requirements. Allows for vendoring, making it useful for restricted
environments. Compared to 'cpp11', it adds support for converting 'C++' maps to 'R' lists, 'Roxygen' documentation
directly in 'C++' code, proper handling of matrix attributes, support for nullable external pointers, bidirectional
copy of complex number types, flexibility in type conversions, use of nullable pointers, and various performance
optimizations.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Posit Software, PBC [aut]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between cpp4r versions 0.5.0 dated 2026-04-13 and 0.5.1 dated 2026-04-15
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ inst/include/cpp4r/function.hpp | 4 ++-- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Bayesian Hierarchical Models for Basket Trials
Description: Provides functions for the evaluation of basket
trial designs with binary endpoints. Operating characteristics of a
basket trial design are assessed by simulating trial data according to
scenarios, analyzing the data with Bayesian hierarchical models (BHMs), and
assessing decision probabilities on stratum and trial-level based on Go / No-go decision making.
The package is build for high flexibility regarding decision rules,
number of interim analyses, number of strata, and recruitment.
The BHMs proposed by
Berry et al. (2013) <doi:10.1177/1740774513497539>
and Neuenschwander et al. (2016) <doi:10.1002/pst.1730>,
as well as a model that combines both approaches are implemented.
Functions are provided to implement Bayesian decision rules as for example
proposed by Fisch et al. (2015) <doi:10.1177/2168479014533970>.
In addition, posterior point estimates (mean/median) and credible intervals
for response rates and some model parameters can be calculated.
For simulated tri [...truncated...]
Author: Stephan Wojciekowski [aut, cre],
Tathagata Chattopadhyay [aut]
Maintainer: Stephan Wojciekowski <stephan.wojciekowski@boehringer-ingelheim.com>
Diff between bhmbasket versions 1.0.0 dated 2026-02-21 and 1.1.0 dated 2026-04-15
DESCRIPTION | 9 MD5 | 51 - NAMESPACE | 1 NEWS.md | 8 R/AnalysisFunctions.R | 1040 ++++++++++++++++++-------------- R/DataFunctions.R | 348 +++++----- R/OCFunctions.R | 514 ++++++++------- R/PriorFunctions.R | 1022 +++++++++++++++++++++---------- README.md | 22 inst/WORDLIST | 38 - inst/doc/Running_bhmbasket_on_HPC.html | 4 inst/doc/reproduceExNex.html | 4 inst/jags_models/exnex_adj_mix.txt |only inst/jags_models/exnex_mix.txt |only man/getAverageNSubjects.Rd | 4 man/getEstimates.Rd | 7 man/getGoDecisions.Rd | 15 man/getPriorParameters.Rd | 28 man/performAnalyses.Rd | 13 man/saveScenarios.Rd | 4 man/setPriorParametersExNex.Rd | 60 + man/setPriorParametersExNexAdj.Rd | 75 ++ man/setPriorParametersStratifiedMix.Rd |only tests/testthat/test-AnalysisFunctions.R | 622 ++++++++++++------- tests/testthat/test-DataFunctions.R | 126 +-- tests/testthat/test-Misc.R | 222 +++--- tests/testthat/test-OCFunctions.R | 192 ++--- tests/testthat/test-PriorFunctions.R | 94 +- 28 files changed, 2731 insertions(+), 1792 deletions(-)
Title: Functions and Data for the Book 'Applied Hierarchical Modeling
in Ecology' Vols 1 and 2
Description: Provides functions to simulate data sets from hierarchical ecological models, including all the simulations described in the two volume publication 'Applied Hierarchical Modeling in Ecology: Analysis of distribution, abundance and species richness in R and BUGS' by Marc Kéry and Andy Royle: volume 1 (2016, ISBN: 978-0-12-801378-6) and volume 2 (2021, ISBN: 978-0-12-809585-0), <https://www.mbr-pwrc.usgs.gov/pubanalysis/keryroylebook/>. It also has all the utility functions and data sets needed to replicate the analyses shown in the books.
Author: Marc Kery [aut],
Andy Royle [aut],
Mike Meredith [aut],
Ken Kellner [ctb, cre] ,
Urs Breitenmoser [dtc] ,
Richard Chandler [ctb],
Bob Dorazio [ctb],
Evan Grant [dtc] ,
John-Andren Henden [dtc] ,
Roland Kays [dtc] ,
David King [dtc] ,
Xavier Lambin [d [...truncated...]
Maintainer: Ken Kellner <contact@kenkellner.com>
Diff between AHMbook versions 0.2.10 dated 2024-09-11 and 0.2.12 dated 2026-04-15
DESCRIPTION | 15 ++++++++------- MD5 | 2 +- 2 files changed, 9 insertions(+), 8 deletions(-)
Title: Additional Operators for Image Models
Description: Implements additional operators for computer vision models, including
operators necessary for image segmentation and object detection deep learning
models.
Author: Daniel Falbel [aut],
Tomasz Kalinowski [ctb, cre],
RStudio [cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between torchvisionlib versions 0.6.0 dated 2025-04-14 and 0.8.0 dated 2026-04-15
torchvisionlib-0.6.0/torchvisionlib/inst/include/torchvisionlib/torchvisionlib_types.h |only torchvisionlib-0.8.0/torchvisionlib/DESCRIPTION | 18 +++++----- torchvisionlib-0.8.0/torchvisionlib/MD5 | 5 +- torchvisionlib-0.8.0/torchvisionlib/NEWS.md | 5 ++ 4 files changed, 17 insertions(+), 11 deletions(-)
More information about torchvisionlib at CRAN
Permanent link
Title: Model Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Model menu includes interfaces for linear and logistic
regression, naive Bayes, neural networks, classification and regression trees,
model evaluation, collaborative filtering, decision analysis, and simulation.
The application extends the functionality in 'radiant.data'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.model versions 1.6.9 dated 2026-01-09 and 1.6.11 dated 2026-04-15
DESCRIPTION | 12 MD5 | 124 +++++++--- NAMESPACE | 9 R/crtree.R | 14 - R/gbt.R | 48 +++ R/logistic.R | 16 + R/nn.R | 22 + R/pdp_vip_compat.R |only R/regress.R | 55 +++- R/rforest.R | 14 - README.md | 37 -- inst/app/tools/analysis/crtree_ui.R | 5 inst/app/tools/analysis/gbt_ui.R | 5 inst/app/tools/analysis/logistic_ui.R | 5 inst/app/tools/analysis/nn_ui.R | 5 inst/app/tools/analysis/regress_ui.R | 5 inst/app/tools/analysis/rforest_ui.R | 7 inst/app/tools/help/crs.md | 2 inst/app/tools/help/dtree.Rmd | 8 inst/app/tools/help/dtree.md | 8 inst/app/tools/help/evalbin.md | 8 inst/app/tools/help/evalreg.md | 6 inst/app/tools/help/figures/cf_summary.png |only inst/app/tools/help/figures/dtree_model.png |only inst/app/tools/help/figures/dtree_plot_final.png |only inst/app/tools/help/figures/dtree_plot_initial.png |only inst/app/tools/help/figures/dtree_sensitivity.png |only inst/app/tools/help/figures/evalbin_confusion.png |only inst/app/tools/help/figures/evalbin_lift_gains.png |only inst/app/tools/help/figures/evalbin_logistic.png |only inst/app/tools/help/figures/evalreg_nn.png |only inst/app/tools/help/figures/evalreg_summary_plot.png |only inst/app/tools/help/figures/logistic_dvd-full.png |only inst/app/tools/help/figures/logistic_dvd.png |only inst/app/tools/help/figures/logistic_plot.png |only inst/app/tools/help/figures/logistic_predict.png |only inst/app/tools/help/figures/logistic_predict_data.png |only inst/app/tools/help/figures/logistic_summary.png |only inst/app/tools/help/figures/mnl_choice_shares.png |only inst/app/tools/help/figures/mnl_plot.png |only inst/app/tools/help/figures/mnl_predict.png |only inst/app/tools/help/figures/mnl_summary.png |only inst/app/tools/help/figures/regress_catalog_F_critical.png |only inst/app/tools/help/figures/regress_catalog_F_test.png |only inst/app/tools/help/figures/regress_catalog_prob_calc.png |only inst/app/tools/help/figures/regress_catalog_summary.png |only inst/app/tools/help/figures/regress_diamonds_corr.png |only inst/app/tools/help/figures/regress_diamonds_dashboard.png |only inst/app/tools/help/figures/regress_diamonds_hist.png |only inst/app/tools/help/figures/regress_diamonds_res_vs_pred.png |only inst/app/tools/help/figures/regress_diamonds_scatter.png |only inst/app/tools/help/figures/regress_ideal_corr.png |only inst/app/tools/help/figures/regress_ideal_dashboard.png |only inst/app/tools/help/figures/regress_ideal_hist.png |only inst/app/tools/help/figures/regress_ideal_res_vs_pred.png |only inst/app/tools/help/figures/regress_ideal_scatter.png |only inst/app/tools/help/figures/regress_ideal_summary.png |only inst/app/tools/help/figures/regress_log_diamonds_corr.png |only inst/app/tools/help/figures/regress_log_diamonds_dashboard.png |only inst/app/tools/help/figures/regress_log_diamonds_hist.png |only inst/app/tools/help/figures/regress_log_diamonds_res_vs_pred.png |only inst/app/tools/help/figures/regress_log_diamonds_scatter.png |only inst/app/tools/help/figures/regress_log_diamonds_summary.png |only inst/app/tools/help/figures/regress_log_diamonds_viz_scatter.png |only inst/app/tools/help/figures/simulater_repeat.png |only inst/app/tools/help/figures/simulater_repeat_plot.png |only inst/app/tools/help/figures/simulater_sim.png |only inst/app/tools/help/figures/simulater_sim_plot.png |only inst/app/tools/help/figures/simulater_view.png |only inst/app/tools/help/logistic.Rmd | 10 inst/app/tools/help/logistic.md | 10 inst/app/tools/help/mnl.Rmd | 8 inst/app/tools/help/mnl.md | 8 inst/app/tools/help/regress.Rmd | 44 +-- inst/app/tools/help/regress.md | 44 +-- inst/app/tools/help/simulater.Rmd | 10 inst/app/tools/help/simulater.md | 10 man/autoplot.partial.Rd |only man/pdp_partial.Rd |only man/pdp_plot.Rd | 16 - man/plot.crtree.Rd | 12 man/plot.gbt.Rd | 12 man/plot.logistic.Rd | 12 man/plot.nn.Rd | 12 man/plot.regress.Rd | 12 man/plot.rforest.Rd | 12 man/pred_plot.Rd | 16 - man/vi_radiant.Rd |only tests/testthat/test_pdp_vip.R |only 89 files changed, 437 insertions(+), 226 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers.
Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic
signatures can either be created and verified manually or via x509 certificates.
AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric
(public key) encryption or EC for Diffie Hellman. High-level envelope functions
combine RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random
number generator, and 'bignum' math methods for manually performing crypto
calculations on large multibyte integers.
Author: Jeroen Ooms [aut, cre] ,
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between openssl versions 2.3.5 dated 2026-02-26 and 2.4.0 dated 2026-04-15
DESCRIPTION | 6 ++--- MD5 | 28 ++++++++++++------------- NEWS | 3 ++ R/bcrypt.R | 2 - build/vignette.rds |binary configure | 7 +++--- inst/doc/bignum.html | 32 ++++++++++++++-------------- inst/doc/crypto_hashing.html | 8 +++---- inst/doc/keys.html | 48 +++++++++++++++++++++---------------------- inst/doc/secure_rng.html | 18 ++++++++-------- man/openssl.Rd | 4 +-- man/pbkdf.Rd | 2 - man/reexports.Rd | 2 - src/cert.c | 6 ++--- src/compatibility.h | 3 +- 15 files changed, 87 insertions(+), 82 deletions(-)
Title: Modelling of Extreme Values
Description: Various tools for the analysis of univariate, multivariate and functional extremes. Exact simulation from max-stable processes (Dombry, Engelke and Oesting, 2016, <doi:10.1093/biomet/asw008>, R-Pareto processes for various parametric models, including Brown-Resnick (Wadsworth and Tawn, 2014, <doi:10.1093/biomet/ast042>) and Extremal Student (Thibaud and Opitz, 2015, <doi:10.1093/biomet/asv045>). Threshold selection methods, including Wadsworth (2016) <doi:10.1080/00401706.2014.998345>, and Northrop and Coleman (2014) <doi:10.1007/s10687-014-0183-z>. Multivariate extreme diagnostics. Estimation and likelihoods for univariate extremes, e.g., Coles (2001) <doi:10.1007/978-1-4471-3675-0>.
Author: Leo Belzile [aut, cre] ,
Jennifer L. Wadsworth [aut],
Paul J. Northrop [aut] ,
Raphael Huser [aut] ,
Scott D. Grimshaw [aut] ,
Jin Zhang [ctb],
Michael A. Stephens [ctb],
Art B. Owen [ctb]
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between mev versions 2.1 dated 2025-11-11 and 2.2 dated 2026-04-15
mev-2.1/mev/R/pickands.R |only mev-2.1/mev/man/plot.mev_shape_rbm.Rd |only mev-2.1/mev/man/plot.mev_thselect_vmetric.Rd |only mev-2.1/mev/man/plot.mev_thselect_wadsworth.Rd |only mev-2.2/mev/DESCRIPTION | 8 mev-2.2/mev/MD5 | 134 - mev-2.2/mev/NAMESPACE | 23 mev-2.2/mev/NEWS.md | 26 mev-2.2/mev/R/Wdiag.R | 2 mev-2.2/mev/R/bias.R | 2089 ++++++++++++++++++------- mev-2.2/mev/R/blocktest.R |only mev-2.2/mev/R/datasets.R | 34 mev-2.2/mev/R/erm.R | 2 mev-2.2/mev/R/extcoef.R | 417 ++++ mev-2.2/mev/R/extremogram.R | 133 + mev-2.2/mev/R/genquantselect.R | 32 mev-2.2/mev/R/gp.R | 116 + mev-2.2/mev/R/infomattest.R | 71 mev-2.2/mev/R/lthill.R | 2 mev-2.2/mev/R/mgplikelihoods.R | 117 + mev-2.2/mev/R/mle.R | 31 mev-2.2/mev/R/mrl.R | 67 mev-2.2/mev/R/penultimate.R | 4 mev-2.2/mev/R/pwm.R |only mev-2.2/mev/R/rmar.R |only mev-2.2/mev/R/taildep.R | 3 mev-2.2/mev/R/tailindex.R | 166 + mev-2.2/mev/R/thselect.R | 366 ++++ mev-2.2/mev/R/vartymetric.R | 287 +++ mev-2.2/mev/build/partial.rdb |binary mev-2.2/mev/build/vignette.rds |binary mev-2.2/mev/data/cheeseborowind.rda |only mev-2.2/mev/data/thames.rda |only mev-2.2/mev/inst/doc/mev-vignette.html | 58 mev-2.2/mev/inst/tinytest/tests_rmar1.R |only mev-2.2/mev/man/abisko.Rd | 2 mev-2.2/mev/man/build.blocks.Rd |only mev-2.2/mev/man/cheeseborowind.Rd |only mev-2.2/mev/man/dot-fit.gpd.rob.Rd | 4 mev-2.2/mev/man/durbin.unif.Rd |only mev-2.2/mev/man/extcoef.Rd | 13 mev-2.2/mev/man/extremo.Rd | 4 mev-2.2/mev/man/fit.gevblock.Rd |only mev-2.2/mev/man/fit.gevblock.marginal.Rd |only mev-2.2/mev/man/fit.gpd.Rd | 10 mev-2.2/mev/man/fit.rlarg.Rd | 2 mev-2.2/mev/man/generate.exponential.Rd |only mev-2.2/mev/man/gev.boot.Rd |only mev-2.2/mev/man/gev2exp.Rd |only mev-2.2/mev/man/gevblock.ll.Rd |only mev-2.2/mev/man/gp.fit.Rd | 10 mev-2.2/mev/man/gpd.boot.Rd | 13 mev-2.2/mev/man/gpd.lmom.Rd | 2 mev-2.2/mev/man/kjtail.Rd | 1 mev-2.2/mev/man/likmgp.Rd | 1 mev-2.2/mev/man/mgp.cll.Rd |only mev-2.2/mev/man/mgp.ll.Rd |only mev-2.2/mev/man/ordexp2gev.Rd |only mev-2.2/mev/man/qqplot.blocksize.Rd |only mev-2.2/mev/man/qqplot.unif.Rd |only mev-2.2/mev/man/qweissman.Rd | 21 mev-2.2/mev/man/rmar1.Rd |only mev-2.2/mev/man/shape.erm.Rd | 2 mev-2.2/mev/man/shape.lthill.Rd | 2 mev-2.2/mev/man/shape.osz.Rd | 2 mev-2.2/mev/man/shape.rbm.Rd | 13 mev-2.2/mev/man/taildep.Rd | 2 mev-2.2/mev/man/test.blocksize.Rd |only mev-2.2/mev/man/test.unif.Rd |only mev-2.2/mev/man/thames.Rd |only mev-2.2/mev/man/thselect.alrs.Rd | 2 mev-2.2/mev/man/thselect.cbm.Rd | 2 mev-2.2/mev/man/thselect.expgqt.Rd | 13 mev-2.2/mev/man/thselect.goks.Rd |only mev-2.2/mev/man/thselect.ksmd.Rd | 2 mev-2.2/mev/man/thselect.mrl.Rd | 7 mev-2.2/mev/man/thselect.pickands.Rd | 5 mev-2.2/mev/man/thselect.samsee.Rd | 2 mev-2.2/mev/man/thselect.vmetric.Rd | 72 mev-2.2/mev/man/thselect.wcvm.Rd |only mev-2.2/mev/man/thselect.wseq.Rd | 15 mev-2.2/mev/man/xacf.Rd |only mev-2.2/mev/man/xdep.xcoef.Rd |only mev-2.2/mev/man/xdep.xindex.Rd | 2 84 files changed, 3583 insertions(+), 831 deletions(-)
Title: 'GGML' Tensor Operations for Machine Learning
Description: Provides 'R' bindings to the 'GGML' tensor library for machine
learning, optimized for 'Vulkan' GPU acceleration with a transparent CPU
fallback. The package features a 'Keras'-like sequential API and a
'PyTorch'-style 'autograd' engine for building, training, and deploying
neural networks. Key capabilities include high-performance 5D tensor
operations, 'f16' precision, and efficient quantization. It supports
native 'ONNX' model import (50+ operators) and 'GGUF' weight loading
from the 'llama.cpp' and 'Hugging Face' ecosystems. Designed for
zero-overhead inference via dedicated weight buffering, it integrates
seamlessly as a 'parsnip' engine for 'tidymodels' and provides
first-class learners for the 'mlr3' framework.
See <https://github.com/ggml-org/ggml> for more information about the
underlying library.
Author: Yuri Baramykov [aut, cre],
Georgi Gerganov [ctb, cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
Mozilla Foundation [ctb, cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between ggmlR versions 0.7.0 dated 2026-04-06 and 0.7.2 dated 2026-04-15
ggmlR-0.7.0/ggmlR/inst/doc/autograd-engine.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/data-parallel-training.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/embedding-ggmlR.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/gpu-vulkan.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/keras-like-api.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/onnx-import.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/quantization.html.asis |only ggmlR-0.7.0/ggmlR/tests/testthat/Rplots.pdf |only ggmlR-0.7.0/ggmlR/tests/testthat/setup.R |only ggmlR-0.7.0/ggmlR/tests/testthat/teardown.R |only ggmlR-0.7.0/ggmlR/vignettes/autograd-engine.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/data-parallel-training.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/embedding-ggmlR.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/gpu-vulkan.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/keras-like-api.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/onnx-import.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/quantization.html.asis |only ggmlR-0.7.2/ggmlR/DESCRIPTION | 56 ggmlR-0.7.2/ggmlR/MD5 | 136 ggmlR-0.7.2/ggmlR/NAMESPACE | 11 ggmlR-0.7.2/ggmlR/NEWS.md | 51 ggmlR-0.7.2/ggmlR/R/LearnerClassifGGML.R |only ggmlR-0.7.2/ggmlR/R/LearnerRegrGGML.R |only ggmlR-0.7.2/ggmlR/R/default_mlp.R |only ggmlR-0.7.2/ggmlR/R/keras_api.R | 43 ggmlR-0.7.2/ggmlR/R/mlr3_marshal.R |only ggmlR-0.7.2/ggmlR/R/parsnip_mlp.R |only ggmlR-0.7.2/ggmlR/R/vulkan.R | 11 ggmlR-0.7.2/ggmlR/R/zzz.R | 82 ggmlR-0.7.2/ggmlR/README.md | 94 ggmlR-0.7.2/ggmlR/build/vignette.rds |binary ggmlR-0.7.2/ggmlR/cleanup | 1 ggmlR-0.7.2/ggmlR/cleanup.win | 1 ggmlR-0.7.2/ggmlR/configure | 52 ggmlR-0.7.2/ggmlR/inst/doc/autograd-engine.R |only ggmlR-0.7.2/ggmlR/inst/doc/autograd-engine.Rmd |only ggmlR-0.7.2/ggmlR/inst/doc/autograd-engine.html | 276 - 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Title: Forecast Reconciliation
Description: Classical (bottom-up and top-down), optimal combination and heuristic
point (Di Fonzo and Girolimetto, 2023 <doi:10.1016/j.ijforecast.2021.08.004>) and
probabilistic (Girolimetto et al. 2024 <doi:10.1016/j.ijforecast.2023.10.003>)
forecast reconciliation procedures for linearly constrained time series
(e.g., hierarchical or grouped time series) in cross-sectional, temporal,
or cross-temporal frameworks.
Author: Daniele Girolimetto [aut, cre] ,
Tommaso Di Fonzo [aut] ,
Yangzhuoran Fin Yang [ctb]
Maintainer: Daniele Girolimetto <daniele.girolimetto@unipd.it>
Diff between FoReco versions 1.2.0 dated 2026-03-12 and 1.2.1 dated 2026-04-15
DESCRIPTION | 6 - MD5 | 16 +-- NEWS.md | 4 R/boot.R | 271 ++++++++++++++++++++++++++++++++++++++++++++++------------ README.md | 2 inst/CITATION | 4 man/csboot.Rd | 35 ++++--- man/ctboot.Rd | 38 +++++--- man/teboot.Rd | 29 ++++-- 9 files changed, 297 insertions(+), 108 deletions(-)
Title: CRAN Task Views
Description: Infrastructure for task views to CRAN-style repositories: Querying task views and installing the associated
packages (client-side tools), generating HTML pages and storing task view information in the repository
(server-side tools).
Author: Achim Zeileis [aut, cre] ,
Kurt Hornik [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between ctv versions 0.9-7 dated 2025-07-27 and 0.9-8 dated 2026-04-15
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- NEWS.md | 11 +++++ R/ctv-server.R | 90 ++++++++++++++++++++++++------------------------ build/vignette.rds |binary inst/CITATION | 17 ++++----- inst/doc/ctv-howto.Rmd | 3 + inst/doc/ctv-howto.html | 11 ++--- vignettes/ctv-howto.Rmd | 3 + 9 files changed, 86 insertions(+), 73 deletions(-)
Title: Interactive Command-Line Menus
Description: Provides interactive command-line menu functionality with
single and multiple selection menus, keyboard navigation (arrow keys or
vi-style j/k), preselection, and graceful fallback for non-interactive
environments. Inspired by tools such as 'inquirer.js'
<https://github.com/SBoudrias/Inquirer.js>, 'pick'
<https://github.com/aisk/pick>, and 'survey'
<https://github.com/AlecAivazis/survey>. Designed to be lightweight and
easy to integrate into 'R' packages and scripts.
Author: Petr Čala [aut, cre]
Maintainer: Petr Čala <61505008@fsv.cuni.cz>
Diff between climenu versions 0.1.5 dated 2026-02-18 and 0.1.7 dated 2026-04-15
climenu-0.1.5/climenu/R/zzz.R |only climenu-0.1.7/climenu/DESCRIPTION | 12 climenu-0.1.7/climenu/MD5 | 22 - climenu-0.1.7/climenu/NAMESPACE | 1 climenu-0.1.7/climenu/R/checkbox.R | 91 +++++ climenu-0.1.7/climenu/R/select.R | 55 +++ climenu-0.1.7/climenu/R/utils.R | 113 +++---- climenu-0.1.7/climenu/build/vignette.rds |binary climenu-0.1.7/climenu/inst/doc/climenu.R | 9 climenu-0.1.7/climenu/inst/doc/climenu.Rmd | 38 -- climenu-0.1.7/climenu/inst/doc/climenu.html | 302 ++++++++----------- climenu-0.1.7/climenu/tests/testthat/test-fallback.R |only climenu-0.1.7/climenu/vignettes/climenu.Rmd | 38 -- 13 files changed, 362 insertions(+), 319 deletions(-)
Title: Hierarchical Probit Estimation for Dichotomized Data
Description: Provides likelihood-based and hierarchical estimation methods
for thresholded (binomial-probit) data. Supports fixed-mean and random-mean
models with maximum likelihood estimation (MLE), generalized linear mixed model
(GLMM), and Bayesian Markov chain Monte Carlo (MCMC) implementations.
For methodological background, see Albert and Chib (1993)
<doi:10.1080/01621459.1993.10476321> and McCulloch (1994)
<doi:10.2307/2297959>.
Author: Zhaoze Liu [aut],
Longwen Shang [aut],
Mary Lesperance [aut],
Shuqing Zhou [aut],
Xuekui Zhang [aut, cre, fnd]
Maintainer: Xuekui Zhang <xuekui@uvic.ca>
Diff between bin2norm versions 0.1.0 dated 2025-11-17 and 0.1.1 dated 2026-04-15
DESCRIPTION | 22 ++++++++++++++++------ MD5 | 2 +- 2 files changed, 17 insertions(+), 7 deletions(-)
Title: Mapping Hidden Geometry into Future Sequences
Description: A variational mapping approach that reveals and expands future temporal dynamics from folded high-dimensional geometric distance spaces, unfold turns a set of time series into a 4D block of pairwise distances between reframed windows, learns a variational mapper that maps those distances to the next reframed window, and produces horizon-wise predictive functions for each input series. In short: it unfolds the future path of each series from a folded geometric distance representation.
Author: Giancarlo Vercellino [aut, cre, cph]
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
Diff between unfold versions 1.0.0 dated 2025-08-26 and 1.0.1 dated 2026-04-15
DESCRIPTION | 8 +++---- MD5 | 10 ++++----- NEWS.md | 5 +++- R/main.R | 46 +++++++++++++++++-------------------------- man/unfold.Rd | 48 ++++++++++++++++++--------------------------- tests/testthat/test-main.R | 31 +++++++++++++++++------------ 6 files changed, 71 insertions(+), 77 deletions(-)
Title: Test Theory Analysis and Biclustering
Description: Implements comprehensive test data engineering methods as described in
Shojima (2022, ISBN:978-9811699856). Provides statistical techniques for
engineering and processing test data: Classical Test Theory (CTT) with
reliability coefficients for continuous ability assessment; Item Response
Theory (IRT) including Rasch, 2PL, and 3PL models with item/test information
functions; Latent Class Analysis (LCA) for nominal clustering; Latent Rank
Analysis (LRA) for ordinal clustering with automatic determination of cluster
numbers; Biclustering methods including infinite relational models for
simultaneous clustering of examinees and items without predefined cluster
numbers; and Bayesian Network Models (BNM) for visualizing inter-item
dependencies. Features local dependence analysis through LRA and biclustering,
parameter estimation, dimensionality assessment, and network structure
visualization for educational, psychological, and social science research.
Author: Koji Kosugi [aut, cre]
Maintainer: Koji Kosugi <kosugitti@gmail.com>
Diff between exametrika versions 1.10.1 dated 2026-03-19 and 1.11.0 dated 2026-04-15
DESCRIPTION | 6 - MD5 | 80 ++++++++-------- NAMESPACE | 8 + NEWS.md | 47 +++++++++ R/00_BiclucterUtils.R | 22 ++++ R/00_dataset_explain.R | 13 ++ R/00_exametrikaPlot.R | 8 + R/00_exametrikaPrint.R | 84 ++++++++++++++++ R/00_plot_biclustering.R | 7 + R/00_plot_lca_lra.R | 5 - R/01_dataFormat.R | 6 + R/07_Biclustering.R | 3 R/07_IRM.R | 53 +++++----- R/15_Biclustering_nominal.R | 66 +++++-------- R/16_Biclustering_ordinal.R | 3 R/17_Biclustering_nominal_IRM.R | 60 ++++-------- R/18_Biclustering_ordinal_IRM.R | 1 R/19_Biclustering_rated.R |only R/20_Biclustering_rated_IRM.R |only R/21_DistractorAnalysis.R |only README.md | 2 data/J21S300.rda |only inst/doc/biclustering.R | 30 ++++++ inst/doc/biclustering.Rmd | 50 ++++++++++ inst/doc/biclustering.html | 127 +++++++++++++++++-------- inst/doc/getting-started.Rmd | 2 inst/doc/getting-started.html | 2 inst/doc/guide-ja.Rmd | 2 inst/doc/guide-ja.html | 2 inst/doc/irt.html | 36 +++---- inst/doc/latent-class-rank.html | 16 +-- inst/doc/network-models.html | 6 - man/Biclustering.Rd | 22 ++++ man/Biclustering_IRM.Rd | 56 ++++++++++- man/DistractorAnalysis.Rd |only man/J15S3810.Rd | 4 man/J21S300.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test-distractor.R |only tests/testthat/test-irm-nominal.R | 11 +- tests/testthat/test-irm-rated.R |only tests/testthat/test-polytomous-biclustering.R | 130 +++++++++++++++++++++++++- vignettes/biclustering.Rmd | 50 ++++++++++ vignettes/getting-started.Rmd | 2 vignettes/guide-ja.Rmd | 2 45 files changed, 778 insertions(+), 246 deletions(-)
Title: 1970s BASIC Interpreter
Description: Executes BASIC programs from the 1970s, for historical and
educational purposes. This enables famous examples of early machine
learning, artificial intelligence, natural language processing, cellular
automata, and so on, to be run in their original form.
Author: Mike Lee [aut, cre]
Maintainer: Mike Lee <random.deviate@gmail.com>
Diff between brassica versions 1.0.2 dated 2022-10-24 and 1.0.3 dated 2026-04-15
DESCRIPTION | 12 +++++++----- MD5 | 14 +++++++------- NEWS | 7 ++++++- build/vignette.rds |binary inst/BASIC/notone.bas | 4 ++-- inst/doc/BASIC.Rnw | 6 +++--- inst/doc/BASIC.pdf |binary vignettes/BASIC.Rnw | 6 +++--- 8 files changed, 28 insertions(+), 21 deletions(-)
Title: Beta Autoregressive Moving Average Models
Description: Fits Beta Autoregressive Moving Average (BARMA) models for time series data distributed in the standard unit interval (0, 1). The estimation is performed via the conditional maximum likelihood method using the Broyden-Fletcher-Goldfarb-Shanno (BFGS) quasi-Newton algorithm. The package includes tools for model fitting, diagnostic checking, and forecasting. Based on the work of Rocha and Cribari-Neto (2009) <doi:10.1007/s11749-008-0112-z> and the associated erratum Rocha and Cribari-Neto (2017) <doi:10.1007/s11749-017-0528-4>. The original code was developed by Fabio M. Bayer.
Author: Everton da Costa [aut, cre] ,
Francisco Cribari-Neto [ctb, ths] ,
Vinicius Scher [ctb]
Maintainer: Everton da Costa <everto.cost@gmail.com>
Diff between betaARMA versions 1.0.1 dated 2026-03-29 and 1.1.0 dated 2026-04-15
betaARMA-1.0.1/betaARMA/man/dot-_get_phi_start.Rd |only betaARMA-1.1.0/betaARMA/DESCRIPTION | 7 betaARMA-1.1.0/betaARMA/MD5 | 34 - betaARMA-1.1.0/betaARMA/NAMESPACE | 1 betaARMA-1.1.0/betaARMA/NEWS.md | 35 + betaARMA-1.1.0/betaARMA/R/barma.R | 168 +++++--- betaARMA-1.1.0/betaARMA/R/fim_barma.R | 254 ++++++------- betaARMA-1.1.0/betaARMA/R/loglik_barma.R | 162 ++++---- betaARMA-1.1.0/betaARMA/R/make_link_structure.R | 106 ++--- betaARMA-1.1.0/betaARMA/R/score_vector_barma.R | 264 +++++++------ betaARMA-1.1.0/betaARMA/R/start_values.R | 398 ++++++++------------- betaARMA-1.1.0/betaARMA/README.md | 93 +++- betaARMA-1.1.0/betaARMA/man/barma.Rd | 108 +++-- betaARMA-1.1.0/betaARMA/man/dot-get_phi_start.Rd |only betaARMA-1.1.0/betaARMA/man/fim_barma.Rd | 131 ++++-- betaARMA-1.1.0/betaARMA/man/loglik_barma.Rd | 97 +++-- betaARMA-1.1.0/betaARMA/man/make_link_structure.Rd | 53 +- betaARMA-1.1.0/betaARMA/man/score_vector_barma.Rd | 101 ++++- betaARMA-1.1.0/betaARMA/man/start_values.Rd | 46 -- 19 files changed, 1122 insertions(+), 936 deletions(-)
Title: Korean National Assembly Data for Political Science Education
Description: Provides ready-to-use datasets from the Korean National Assembly
(assemblies 20 through 22, 2016-2026) for teaching quantitative methods in
political science. Includes legislator metadata, bill proposals, roll call
votes, asset declarations, and policy seminar records. Designed as a Korean
politics counterpart to packages like 'palmerpenguins', enabling students to
practice regression, panel data analysis, text analysis, and network analysis
with real legislative data. Roll call vote data and spatial voting models are
described in Poole and Rosenthal (1985) <doi:10.2307/2111172>. Legislative
data is sourced from the Korean National Assembly Open API.
Author: Kyusik Yang [aut, cre]
Maintainer: Kyusik Yang <kyusik.yang@nyu.edu>
Diff between assemblykor versions 0.1.1 dated 2026-04-07 and 0.1.2 dated 2026-04-15
DESCRIPTION | 6 - MD5 | 58 +++++----- NEWS.md | 11 + R/data.R | 10 - R/download.R | 37 ++++-- R/zzz.R | 6 - README.md | 16 +- inst/CITATION | 2 inst/cheatsheet/assemblykor-cheatsheet.Rmd | 10 - inst/doc/codebook.Rmd | 6 - inst/doc/codebook.html | 6 - inst/doc/introduction.Rmd | 4 inst/doc/introduction.html | 4 inst/doc/quickstart.Rmd | 3 inst/doc/quickstart.html | 3 inst/rmd-tutorials/07-roll-call-analysis.Rmd | 4 inst/shinyapps/07-roll-call-analysis/07-roll-call-analysis.Rmd | 4 inst/shinyapps/assemblykor-tutorials/assemblykor-tutorials.Rmd | 4 inst/tutorials/07-roll-call-analysis/07-roll-call-analysis.Rmd | 4 man/assemblykor-package.Rd | 4 man/figures |only man/get_bill_texts.Rd | 10 + man/get_proposers.Rd | 21 ++- man/roll_calls.Rd | 4 man/votes.Rd | 2 vignettes/codebook.Rmd | 6 - vignettes/introduction.Rmd | 4 vignettes/quickstart.Rmd | 3 28 files changed, 147 insertions(+), 105 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-10 1.0.1
2026-03-31 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-31 0.3.7
2024-12-17 0.3.6
2024-06-02 0.3.5
2024-03-12 0.3.4
Title: Integration of 'Blimp' Software into R
Description: Provides an interface to 'Blimp' software for Bayesian latent variable modeling,
missing data analysis, and multiple imputation. The package generates 'Blimp' syntax,
executes 'Blimp' models, and imports results back into 'R' as structured objects with
methods for visualization and analysis. Requires 'Blimp' software (freely available
at <https://www.appliedmissingdata.com/blimp>) to be installed separately.
Author: Brian T. Keller [aut, cre, cph]
Maintainer: Brian T. Keller <btkeller@missouri.edu>
Diff between rblimp versions 1.0.0 dated 2026-02-20 and 1.1.0 dated 2026-04-14
DESCRIPTION | 8 +-- MD5 | 13 +++--- NAMESPACE | 4 + NEWS.md | 16 +++++++ R/blimp_obj_draws.R |only R/trace_plot.R | 79 +++++++++++++++++++++++++++++---------- README.md | 3 + man/as.array-blimp_obj-method.Rd |only man/as_draws.blimp_obj.Rd |only 9 files changed, 94 insertions(+), 29 deletions(-)
Title: Generating Cluster Masks for Single-Cell Dimensional Reduction
Plots
Description: Implements a procedure to automatically generate 2D masks
for clusters on dimensional reduction plots from methods like
t-SNE (t-distributed stochastic neighbor embedding) or
UMAP (uniform manifold approximation and projection),
with a focus on single-cell RNA-sequencing data.
Author: Alexey Sergushichev [aut, cre]
Maintainer: Alexey Sergushichev <alsergbox@gmail.com>
Diff between mascarade versions 0.3.3 dated 2026-03-24 and 0.3.4 dated 2026-04-14
DESCRIPTION | 10 - MD5 | 20 +- NAMESPACE | 1 NEWS.md | 3 R/fancyMask.R | 276 ++++++++++++++++++---------------- R/mark_shape.R | 13 + inst/doc/mascarade-gallery.html | 16 - inst/doc/mascarade-tutorial.html | 30 +-- man/fancyMask.Rd | 19 +- tests/testthat/test-fancyMask.R | 147 +++++++++++++++--- tests/testthat/test-geom_mark_shape.R | 71 ++++++++ 11 files changed, 411 insertions(+), 195 deletions(-)
Title: Multivariate Spatio-Temporal Models using Structural Equations
Description: Fits a wide variety of multivariate spatio-temporal models
with simultaneous and lagged interactions among variables (including
vector autoregressive spatio-temporal ('VAST') dynamics)
for areal, continuous, or network spatial domains.
It includes time-variable, space-variable, and space-time-variable
interactions using dynamic structural equation models ('DSEM')
as expressive interface, and the 'mgcv' package to specify splines
via the formula interface. See Thorson et al. (2025)
<doi:10.1111/geb.70035> for more details.
Author: James T. Thorson [aut, cre] ,
Sean C. Anderson [aut]
Maintainer: James T. Thorson <James.Thorson@noaa.gov>
Diff between tinyVAST versions 1.5.0 dated 2026-03-23 and 1.5.1 dated 2026-04-14
DESCRIPTION | 8 ++--- MD5 | 22 ++++++------- NEWS.md | 5 +++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/dsem.html | 16 +++++----- inst/doc/mgcv.html | 2 - inst/doc/multiple_data.html | 2 - inst/doc/spatial.html | 8 ++--- inst/doc/spatial_factor_analysis.html | 6 +-- man/sanity.Rd | 54 +++++++++++++++++----------------- src/tinyVAST.cpp | 8 ++--- 12 files changed, 68 insertions(+), 63 deletions(-)
Title: Optimize and Compress Images
Description: Optimize and compress images using 'Rust' libraries to reduce
file sizes while maintaining image quality. Supports PNG palette
reduction and dithering via the 'exoquant' crate before lossless PNG
optimization via the 'oxipng' crate, and JPEG re-encoding via the
'mozjpeg' crate. The package provides functions to optimize individual
image files or entire directories, with configurable compression levels.
Use tinyimg() as a convenient entry point for mixed PNG/JPEG workflows.
Author: Yihui Xie [aut, cre, cph] ,
Authors of the dependency Rust crates [ctb, cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinyimg versions 0.3 dated 2026-03-06 and 0.4 dated 2026-04-14
tinyimg-0.3/tinyimg/man/tinypng.Rd |only tinyimg-0.4/tinyimg/DESCRIPTION | 13 - tinyimg-0.4/tinyimg/MD5 | 32 +- tinyimg-0.4/tinyimg/NAMESPACE | 3 tinyimg-0.4/tinyimg/NEWS.md | 11 tinyimg-0.4/tinyimg/R/extendr-wrappers.R | 4 tinyimg-0.4/tinyimg/R/tinyimg-package.R | 4 tinyimg-0.4/tinyimg/R/tinyimg.R |only tinyimg-0.4/tinyimg/R/tinyjpg.R |only tinyimg-0.4/tinyimg/R/tinypng.R | 108 +++------ tinyimg-0.4/tinyimg/README.md | 42 +++ tinyimg-0.4/tinyimg/inst/AUTHORS | 5 tinyimg-0.4/tinyimg/man/tinyimg-package.Rd | 5 tinyimg-0.4/tinyimg/man/tinyimg.Rd |only tinyimg-0.4/tinyimg/src/rust/Cargo.lock | 96 ++++++-- tinyimg-0.4/tinyimg/src/rust/Cargo.toml | 1 tinyimg-0.4/tinyimg/src/rust/src/lib.rs | 267 +++++++++++++++--------- tinyimg-0.4/tinyimg/src/rust/vendor.tar.xz |binary tinyimg-0.4/tinyimg/tests/testit/test-tinyimg.R |only tinyimg-0.4/tinyimg/tests/testit/test-tinyjpg.R |only 20 files changed, 377 insertions(+), 214 deletions(-)
Title: Generalized Spatial Autoregresive Models for Mean and Variance
Description: Modeling spatial dependencies in dependent variables, extending traditional spatial regression approaches. It allows for the joint modeling of both the mean and the variance of the dependent variable, incorporating semiparametric effects in both models. Based on generalized additive models (GAM), the package enables the inclusion of non-parametric terms while maintaining the classical theoretical framework of spatial regression. Additionally, it implements the Generalized Spatial Autoregression (GSAR) model, which extends classical methods like logistic Spatial Autoregresive Models (SAR), probit Spatial Autoregresive Models (SAR), and Poisson Spatial Autoregresive Models (SAR), offering greater flexibility in modeling spatial dependencies and significantly improving computational efficiency and the statistical properties of the estimators. Related work includes: a) J.D. Toloza-Delgado, Melo O.O., Cruz N.A. (2024). "Joint spatial modeling of mean and non-homogeneous variance combining s [...truncated...]
Author: Nelson Alirio Cruz Gutierrez [aut, cre, cph],
Oscar Orlando Melo [aut],
Jurgen Toloza-Delgado [aut]
Maintainer: Nelson Alirio Cruz Gutierrez <nelson-alirio.cruz@uib.es>
Diff between spatemR versions 1.2.0 dated 2025-06-03 and 1.3.0 dated 2026-04-14
spatemR-1.2.0/spatemR/R/GEESAR.R |only spatemR-1.2.0/spatemR/R/Hurdle_GEESAR.R |only spatemR-1.2.0/spatemR/R/summary.GEESAR.R |only spatemR-1.2.0/spatemR/man/GEESAR.Rd |only spatemR-1.2.0/spatemR/man/Hurdle_GEESAR.Rd |only spatemR-1.2.0/spatemR/man/print.summary.GEESAR.Rd |only spatemR-1.3.0/spatemR/DESCRIPTION | 10 - spatemR-1.3.0/spatemR/MD5 | 24 +- spatemR-1.3.0/spatemR/NAMESPACE | 65 +++---- spatemR-1.3.0/spatemR/R/GSCIMC.R |only spatemR-1.3.0/spatemR/R/Hurdle_GSCIMC.R |only spatemR-1.3.0/spatemR/R/SARARgamlss.R | 145 ++++++++--------- spatemR-1.3.0/spatemR/R/summary.GSCIMC.R |only spatemR-1.3.0/spatemR/R/var_rho_inv.R |only spatemR-1.3.0/spatemR/man/GSCIMC.Rd |only spatemR-1.3.0/spatemR/man/Hurdle_GSCIMC.Rd |only spatemR-1.3.0/spatemR/man/print.summary.GSCIMC.Rd |only spatemR-1.3.0/spatemR/man/print.summary.SARARgamlss.Rd | 2 spatemR-1.3.0/spatemR/man/summary_SAR.Rd | 14 - spatemR-1.3.0/spatemR/man/var_rho_inv.Rd |only 20 files changed, 136 insertions(+), 124 deletions(-)
Title: Track 'ggplot2' Calls
Description: Provides a way to log 'ggplot' component calls, which can be
useful for debugging and understanding how 'ggplot' objects are created.
The logged calls can be printed, saved, and re-executed to reproduce the
original 'ggplot' object.
Author: Panwen Wang [aut, cre]
Maintainer: Panwen Wang <pwwang@pwwang.com>
Diff between gglogger versions 0.1.7 dated 2025-10-08 and 0.1.8 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 1 - R/gglogger.R | 3 +++ man/plus-.gg.Rd | 1 + tests/testthat/test-gglogger.R | 8 ++++++++ 6 files changed, 20 insertions(+), 9 deletions(-)
Title: Efficient Voting Methods for Committee Selection
Description: A fast 'Rcpp'-based implementation of polynomially-computable
voting theory methods for committee ranking and scoring. The package
includes methods such as Approval Voting (AV), Satisfaction Approval
Voting (SAV), sequential Proportional Approval Voting (PAV), and
sequential Phragmen's Rule. Weighted variants of these methods are
also provided, allowing for differential voter influence.
Author: John Zobolas [cre, aut] ,
Anne-Marie George [ctb]
Maintainer: John Zobolas <bblodfon@gmail.com>
Diff between fastVoteR versions 0.0.1 dated 2024-11-27 and 0.0.2 dated 2026-04-14
fastVoteR-0.0.1/fastVoteR/R/bibentries.R |only fastVoteR-0.0.2/fastVoteR/DESCRIPTION | 18 +++++----- fastVoteR-0.0.2/fastVoteR/LICENSE |only fastVoteR-0.0.2/fastVoteR/MD5 | 23 ++++++------- fastVoteR-0.0.2/fastVoteR/NAMESPACE | 1 fastVoteR-0.0.2/fastVoteR/NEWS.md | 11 ++++++ fastVoteR-0.0.2/fastVoteR/R/fastVoteR-package.R | 1 fastVoteR-0.0.2/fastVoteR/R/rank_candidates.R | 11 +++++- fastVoteR-0.0.2/fastVoteR/R/voting_methods.R | 18 +++++++--- fastVoteR-0.0.2/fastVoteR/README.md | 37 +++++++-------------- fastVoteR-0.0.2/fastVoteR/build/partial.rdb |binary fastVoteR-0.0.2/fastVoteR/man/fastVoteR-package.Rd |only fastVoteR-0.0.2/fastVoteR/man/rank_candidates.Rd | 17 +++------ fastVoteR-0.0.2/fastVoteR/src/phragmen.cpp | 2 - 14 files changed, 79 insertions(+), 60 deletions(-)
Title: Parallel and Memory-Efficient Ecological Diversity Metrics
Description: Computes alpha and beta diversity metrics using concurrent 'C' threads.
Metrics include 'UniFrac', Faith's phylogenetic diversity, Bray-Curtis
dissimilarity, Shannon diversity index, and many others.
Also parses newick trees into 'phylo' objects and rarefies feature tables.
Author: Daniel P. Smith [aut, cre] ,
Melissa O'Neill [ctb, cph] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between ecodive versions 2.2.2 dated 2026-01-16 and 2.2.6 dated 2026-04-14
ecodive-2.2.2/ecodive/inst/doc/bdiv_guide.Rmd |only ecodive-2.2.2/ecodive/inst/doc/bdiv_guide.html |only ecodive-2.2.2/ecodive/man/adiv_functions.Rd |only ecodive-2.2.2/ecodive/man/bdiv_functions.Rd |only ecodive-2.2.2/ecodive/src/utils.c |only ecodive-2.2.2/ecodive/vignettes/bdiv_guide.Rmd |only ecodive-2.2.6/ecodive/DESCRIPTION | 11 ecodive-2.2.6/ecodive/MD5 | 156 + ecodive-2.2.6/ecodive/NEWS.md | 36 ecodive-2.2.6/ecodive/R/alpha_div.r | 557 ++++-- ecodive-2.2.6/ecodive/R/beta_div.r | 1461 +++++++++++++---- ecodive-2.2.6/ecodive/R/data.r | 3 ecodive-2.2.6/ecodive/R/documentation.r | 314 +-- ecodive-2.2.6/ecodive/R/metrics.r | 33 ecodive-2.2.6/ecodive/R/rarefy.r | 224 +- ecodive-2.2.6/ecodive/R/read_tree.r | 2 ecodive-2.2.6/ecodive/R/utils.r | 2 ecodive-2.2.6/ecodive/R/validate.r | 223 +- ecodive-2.2.6/ecodive/README.md | 8 ecodive-2.2.6/ecodive/build/partial.rdb |only ecodive-2.2.6/ecodive/build/vignette.rds |binary ecodive-2.2.6/ecodive/inst/COPYRIGHTS |only ecodive-2.2.6/ecodive/inst/doc/adiv.Rmd | 123 - ecodive-2.2.6/ecodive/inst/doc/adiv.html | 314 ++- ecodive-2.2.6/ecodive/inst/doc/bdiv.Rmd | 149 + ecodive-2.2.6/ecodive/inst/doc/bdiv.html | 379 ++++ ecodive-2.2.6/ecodive/inst/doc/performance.Rmd | 16 ecodive-2.2.6/ecodive/inst/doc/performance.html | 30 ecodive-2.2.6/ecodive/man/ace.Rd |only ecodive-2.2.6/ecodive/man/adiv_assert_integer.Rd |only ecodive-2.2.6/ecodive/man/adiv_binary_normalized.Rd |only ecodive-2.2.6/ecodive/man/adiv_percent_normalized.Rd |only ecodive-2.2.6/ecodive/man/aitchison.Rd |only ecodive-2.2.6/ecodive/man/alpha_div.Rd | 46 ecodive-2.2.6/ecodive/man/bdiv_assert_integer.Rd |only ecodive-2.2.6/ecodive/man/bdiv_binary_normalized.Rd |only ecodive-2.2.6/ecodive/man/bdiv_percent_normalized.Rd |only ecodive-2.2.6/ecodive/man/berger.Rd |only ecodive-2.2.6/ecodive/man/beta_div.Rd | 109 - ecodive-2.2.6/ecodive/man/bhattacharyya.Rd |only ecodive-2.2.6/ecodive/man/bray.Rd |only ecodive-2.2.6/ecodive/man/brillouin.Rd |only ecodive-2.2.6/ecodive/man/canberra.Rd |only ecodive-2.2.6/ecodive/man/chao1.Rd |only ecodive-2.2.6/ecodive/man/chebyshev.Rd |only ecodive-2.2.6/ecodive/man/chord.Rd |only ecodive-2.2.6/ecodive/man/clark.Rd |only ecodive-2.2.6/ecodive/man/divergence.Rd |only ecodive-2.2.6/ecodive/man/documentation.Rd | 60 ecodive-2.2.6/ecodive/man/euclidean.Rd |only ecodive-2.2.6/ecodive/man/ex_counts.Rd | 1 ecodive-2.2.6/ecodive/man/faith.Rd |only ecodive-2.2.6/ecodive/man/fisher.Rd |only ecodive-2.2.6/ecodive/man/generalized_unifrac.Rd |only ecodive-2.2.6/ecodive/man/gower.Rd |only ecodive-2.2.6/ecodive/man/hamming.Rd |only ecodive-2.2.6/ecodive/man/hellinger.Rd |only ecodive-2.2.6/ecodive/man/horn.Rd |only ecodive-2.2.6/ecodive/man/inv_simpson.Rd |only ecodive-2.2.6/ecodive/man/jaccard.Rd |only ecodive-2.2.6/ecodive/man/jensen.Rd |only ecodive-2.2.6/ecodive/man/jsd.Rd |only ecodive-2.2.6/ecodive/man/lorentzian.Rd |only ecodive-2.2.6/ecodive/man/manhattan.Rd |only ecodive-2.2.6/ecodive/man/margalef.Rd |only ecodive-2.2.6/ecodive/man/matusita.Rd |only ecodive-2.2.6/ecodive/man/mcintosh.Rd |only ecodive-2.2.6/ecodive/man/menhinick.Rd |only ecodive-2.2.6/ecodive/man/metrics.Rd | 24 ecodive-2.2.6/ecodive/man/minkowski.Rd |only ecodive-2.2.6/ecodive/man/morisita.Rd |only ecodive-2.2.6/ecodive/man/motyka.Rd |only ecodive-2.2.6/ecodive/man/normalized_unifrac.Rd |only ecodive-2.2.6/ecodive/man/observed.Rd |only ecodive-2.2.6/ecodive/man/ochiai.Rd |only ecodive-2.2.6/ecodive/man/pseudocount_section.Rd |only ecodive-2.2.6/ecodive/man/psym_chisq.Rd |only ecodive-2.2.6/ecodive/man/rarefy.Rd | 139 - ecodive-2.2.6/ecodive/man/shannon.Rd |only ecodive-2.2.6/ecodive/man/simpson.Rd |only ecodive-2.2.6/ecodive/man/soergel.Rd |only ecodive-2.2.6/ecodive/man/sorensen.Rd |only ecodive-2.2.6/ecodive/man/squared_chisq.Rd |only ecodive-2.2.6/ecodive/man/squared_chord.Rd |only ecodive-2.2.6/ecodive/man/squared_euclidean.Rd |only ecodive-2.2.6/ecodive/man/squares.Rd |only ecodive-2.2.6/ecodive/man/topsoe.Rd |only ecodive-2.2.6/ecodive/man/unweighted_unifrac.Rd |only ecodive-2.2.6/ecodive/man/variance_adjusted_unifrac.Rd |only ecodive-2.2.6/ecodive/man/wave_hedges.Rd |only ecodive-2.2.6/ecodive/man/weighted_unifrac.Rd |only ecodive-2.2.6/ecodive/src/alpha_div.c | 78 ecodive-2.2.6/ecodive/src/beta_div.c | 46 ecodive-2.2.6/ecodive/src/ecodive.h | 17 ecodive-2.2.6/ecodive/src/ecomatrix.c | 2 ecodive-2.2.6/ecodive/src/ecotree.c | 2 ecodive-2.2.6/ecodive/src/get.c | 2 ecodive-2.2.6/ecodive/src/init.c | 10 ecodive-2.2.6/ecodive/src/memory.c | 2 ecodive-2.2.6/ecodive/src/normalize.c | 94 - ecodive-2.2.6/ecodive/src/parallel.c |only ecodive-2.2.6/ecodive/src/rarefy.c | 143 - ecodive-2.2.6/ecodive/src/read_tree.c | 2 ecodive-2.2.6/ecodive/src/unifrac.c | 44 ecodive-2.2.6/ecodive/tests/testthat/helper.r | 4 ecodive-2.2.6/ecodive/tests/testthat/test-beta_div.r | 85 ecodive-2.2.6/ecodive/tests/testthat/test-ecomatrix.r | 15 ecodive-2.2.6/ecodive/tests/testthat/test-rarefy.r | 213 +- ecodive-2.2.6/ecodive/tests/testthat/test-validate.r | 144 + ecodive-2.2.6/ecodive/vignettes/adiv.Rmd | 123 - ecodive-2.2.6/ecodive/vignettes/bdiv.Rmd | 149 + ecodive-2.2.6/ecodive/vignettes/performance.Rmd | 16 112 files changed, 3951 insertions(+), 1660 deletions(-)
Title: Interactive Maps with 'Mapbox GL JS' and 'MapLibre GL JS'
Description: Provides an interface to the 'Mapbox GL JS' (<https://docs.mapbox.com/mapbox-gl-js/guides>)
and the 'MapLibre GL JS' (<https://maplibre.org/maplibre-gl-js/docs/>) interactive mapping libraries to help users
create custom interactive maps in R. Users can create interactive globe visualizations; layer 'sf' objects to create
filled maps, circle maps, 'heatmaps', and three-dimensional graphics; and customize map styles and views. The package
also includes utilities to use 'Mapbox' and 'MapLibre' maps in 'Shiny' web applications.
Author: Kyle Walker [aut, cre]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between mapgl versions 0.4.5 dated 2026-03-06 and 0.4.6 dated 2026-04-14
DESCRIPTION | 10 MD5 | 65 +- NAMESPACE | 3 NEWS.md | 16 R/controls.R | 8 R/layers.R | 101 +++ R/legends.R | 6 R/mapboxgl.R | 3 R/maplibre.R | 3 R/markers.R | 4 R/quickview.R | 12 R/screenshot.R |only R/shiny.R | 6 R/sources.R | 288 +++++++--- inst/htmlwidgets/lib/legend-interactivity/legend-interactivity.js | 235 +++++--- inst/htmlwidgets/lib/mapbox-gl-draw/mapbox-gl-draw.js | 2 inst/htmlwidgets/lib/maplibre-gl/maplibre-gl.js | 8 inst/htmlwidgets/mapboxgl.js | 139 ---- inst/htmlwidgets/mapboxgl.yaml | 13 inst/htmlwidgets/mapboxgl_compare.yaml | 10 inst/htmlwidgets/maplibregl.js | 138 ---- inst/htmlwidgets/maplibregl.yaml | 9 inst/htmlwidgets/maplibregl_compare.js | 213 ++++--- inst/htmlwidgets/maplibregl_compare.yaml | 4 inst/htmlwidgets/screenshot.js |only man/add_circle_layer.Rd | 9 man/add_fill_extrusion_layer.Rd | 18 man/add_fill_layer.Rd | 3 man/add_line_layer.Rd | 12 man/add_raster_layer.Rd | 19 man/add_screenshot_control.Rd | 6 man/add_symbol_layer.Rd | 6 man/basemap_style.Rd |only man/map_legends.Rd | 2 man/print_map.Rd |only man/save_map.Rd |only 36 files changed, 792 insertions(+), 579 deletions(-)
Title: Multivariate Normal Distribution
Description: Calculates and differentiates probabilities and density of (conditional) multivariate normal distribution and Gaussian copula (with various marginal distributions) using methods described in A. Genz (2004) <doi:10.1023/B:STCO.0000035304.20635.31>, A. Genz, F. Bretz (2009) <doi:10.1007/978-3-642-01689-9>, H. I. Gassmann (2003) <doi:10.1198/1061860032283> and E. Kossova, B. Potanin (2018) <https://ideas.repec.org/a/ris/apltrx/0346.html>.
Author: Bogdan Potanin [aut, cre, ctb],
Sofiia Dolgikh [ctb]
Maintainer: Bogdan Potanin <bogdanpotanin@gmail.com>
Diff between mnorm versions 1.2.2 dated 2023-11-29 and 1.2.3 dated 2026-04-14
DESCRIPTION | 12 - MD5 | 46 ++--- R/RcppExports.R | 177 ++++++++++---------- inst/include/mnorm_RcppExports.h | 4 man/cmnorm.Rd | 128 +++++++------- man/dmnorm.Rd | 167 +++++++++---------- man/fromBase.Rd | 10 - man/halton.Rd | 30 +-- man/pbetaDiff.Rd | 42 ++-- man/pmnorm.Rd | 342 +++++++++++++++++++-------------------- man/qnormFast.Rd | 29 +-- man/rmnorm.Rd | 58 +++--- man/seqPrimes.Rd | 4 man/stdt.Rd | 61 +++--- man/toBase.Rd | 6 src/RcppExports.cpp | 38 ++-- src/cmnorm.cpp | 56 +++--- src/dmnorm.cpp | 46 ++--- src/halton.cpp | 60 +++--- src/pmnorm.cpp | 69 +++---- src/qmnorm.cpp | 39 ++-- src/qmnorm.h | 2 src/rmnorm.cpp | 26 +- src/t0.cpp | 90 +++++----- 24 files changed, 785 insertions(+), 757 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020)
<DOI:10.18637/jss.v092.i01>. Shift-scale (Siegfried et al, 2023, <DOI:10.1080/00031305.2023.2203177>)
and multivariate (Klein et al, 2022, <DOI:10.1111/sjos.12501>) transformation models
are part of this package. A package vignette is available from <DOI:10.32614/CRAN.package.mlt.docreg> and
more convenient user interfaces to many models from <DOI:10.32614/CRAN.package.tram>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.7-4 dated 2026-03-06 and 1.8-0 dated 2026-04-14
DESCRIPTION | 8 ++-- MD5 | 12 +++--- NAMESPACE | 2 + R/mmlt.R | 108 ++++++++++++++++++++++++++++++++++++++---------------- build/partial.rdb |binary inst/NEWS.Rd | 11 +++++ man/mmlt.Rd | 12 ++++-- 7 files changed, 108 insertions(+), 45 deletions(-)
Title: R Client for the 'OMOPHub' Medical Vocabulary API
Description: Provides an R interface to the 'OMOPHub' API for accessing
'OHDSI ATHENA' standardized medical vocabularies. Supports concept search,
semantic search using neural embeddings, concept similarity, vocabulary
exploration, hierarchy navigation, relationship queries, concept
mappings, and FHIR-to-OMOP concept resolution with automatic pagination.
Author: Alex Chen [aut, cre, cph],
Observational Health Data Science and Informatics [cph]
Maintainer: Alex Chen <alex@omophub.com>
Diff between omophub versions 1.5.0 dated 2026-03-26 and 1.6.0 dated 2026-04-14
DESCRIPTION | 10 +- MD5 | 33 +++--- NEWS.md | 25 +++++ R/client.R | 11 ++ R/fhir.R |only README.md | 43 ++++++++ inst/doc/getting-started.R | 36 +++++++ inst/doc/getting-started.Rmd | 54 +++++++++++ inst/doc/getting-started.html | 47 +++++++++ man/FhirResource.Rd |only man/OMOPHubClient.Rd | 2 man/SearchResource.Rd | 60 ++++++++++++ man/compact_list.Rd |only man/omophub-package.Rd | 2 tests/testthat/test-auth.R | 44 +++++++++ tests/testthat/test-concepts.R | 161 +++++++++++++++++++++++++++++++++ tests/testthat/test-fhir-integration.R |only tests/testthat/test-fhir.R |only tests/testthat/test-relationships.R | 52 ++++++++++ vignettes/getting-started.Rmd | 54 +++++++++++ 20 files changed, 613 insertions(+), 21 deletions(-)
Title: Develop Concise but Comprehensive Shortened Versions of
Psychometric Instruments
Description: Operationalizes the identification problem of which subset of items should be kept in the shortened version of a said psychometric instrument to best represent the set of items comprised in the original version of the said psychometric instrument.
Author: Lois Fournier [aut, cre] ,
Alexandre Heeren [aut] ,
Stephanie Baggio [aut] ,
Luke Clark [aut] ,
Antonio Verdejo-Garcia [aut] ,
Jose C. Perales [aut] ,
Joel Billieux [aut]
Maintainer: Lois Fournier <lois.fournier@unil.ch>
Diff between shortr versions 1.0.1 dated 2025-04-15 and 1.0.2 dated 2026-04-14
DESCRIPTION | 47 +++- MD5 | 15 - NAMESPACE | 1 NEWS.md |only R/shortr.R | 557 +++++++++++++++++++++++++++++------------------------- README.md | 104 ++++------ build/partial.rdb |binary inst/CITATION | 24 +- man/shortr.Rd | 43 +--- 9 files changed, 416 insertions(+), 375 deletions(-)
Title: Computation of NTLKwIEx Distribution Properties
Description: Implements statistical tools for analyzing, simulating, and computing properties of the New Topp-Leone Kumaraswamy Inverse Exponential (NTLKwIEx) distribution. See Atchadé M, Otodji T, and Djibril A (2024) <doi:10.1063/5.0179458> and Atchadé M, Otodji T, Djibril A, and N'bouké M (2023) <doi:10.1515/phys-2023-0151> for details.
Author: Mintode Nicodeme Atchade [aut],
Theophile Otodji [aut, cre]
Maintainer: Theophile Otodji <otodjitheodule@gmail.com>
Diff between NTLKwIEx versions 0.1.0 dated 2024-02-05 and 0.2.0 dated 2026-04-14
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: A Collection of Tools for Network Analysis
Description: Provides a collection of network analytic (convenience) functions which are missing in other standard packages. This includes triad census with attributes <doi:10.1016/j.socnet.2019.04.003>, core-periphery models <doi:10.1016/S0378-8733(99)00019-2>, and several graph generators. Most functions are build upon 'igraph'.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between netUtils versions 0.8.4 dated 2026-01-24 and 0.8.5 dated 2026-04-14
DESCRIPTION | 6 - MD5 | 24 ++-- NEWS.md | 4 R/core_periphery.R | 92 ++++++--------- R/dyad_census_attr.R | 5 R/fast_cliques.R | 1 R/graph_products.R | 21 +-- R/graph_structures.R | 11 + R/graphs.R | 27 +--- R/print_igraph.R | 41 ++---- R/qap.R | 21 +++ R/sample_kcores.R | 10 + R/triad_census_attr.R | 293 ++++++++++++++++++++++++++++++++++++++++++++++---- 13 files changed, 402 insertions(+), 154 deletions(-)
Title: Multilevel Supervised Topic Models with Multiple Outcomes
Description: Fits latent Dirichlet allocation (LDA), supervised topic models,
and multilevel supervised topic models for text data with multiple
outcome variables. Core estimation routines are implemented in C++
using the 'Rcpp' ecosystem.
For topic models, see Blei et al. (2003) <https://www.jmlr.org/papers/volume3/blei03a/blei03a.pdf>.
For supervised topic models, see Blei and McAuliffe (2007) <https://papers.nips.cc/paper_files/paper/2007/hash/d56b9fc4b0f1be8871f5e1c40c0067e7-Abstract.html>.
Author: Tomoya Himeno [aut, cre]
Maintainer: Tomoya Himeno <bd24f002@g.hit-u.ac.jp>
Diff between mlstm versions 0.1.6 dated 2026-04-03 and 0.1.7 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/doc/mlstm-intro.html | 2 +- src/MLSTM.cpp | 14 +++++++------- src/STM.cpp | 12 ++++++------ 5 files changed, 21 insertions(+), 21 deletions(-)
Title: Automated Item Removal Strategies for Exploratory Factor
Analysis
Description: Automates the identification and comparative evaluation of
item-removal strategies in exploratory factor analysis, producing
transparent summaries (explained variance, loading ranges, reliability)
to support comfortable, reproducible decisions. The criteria are
based on best practices and established heuristics (e.g., Costello &
Osborne (2005) <doi:10.7275/jyj1-4868>, Howard (2016)
<doi:10.1080/10447318.2015.1087664>). Includes flexible thresholds for
factor loadings (min_loading) and cross-loading differences (loading_diff).
Author: Ahmet Caliskan [aut, cre],
Abdullah Faruk Kilic [aut]
Maintainer: Ahmet Caliskan <ahmetcaliskan1987@gmail.com>
Diff between ItemRest versions 0.2.4 dated 2026-04-13 and 0.2.5 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 7 ++----- R/itemrest_core.R | 6 +++--- inst/doc/ItemRest_Demonstration.html | 10 +++++----- 5 files changed, 17 insertions(+), 20 deletions(-)
Title: Conditional Mutual Information Estimation for Multi-Omics Data
Description: The biases introduced in association measures, particularly mutual information,
are influenced by factors such as tumor purity, mutation burden, and hypermethylation.
This package provides the estimation of conditional mutual information (CMI) and its
statistical significance with a focus on its application to multi-omics data. Utilizing
B-spline functions (inspired by Daub et al. (2004) <doi:10.1186/1471-2105-5-118>), the package offers tools to estimate the association between heterogeneous multi-
omics data, while removing the effects of confounding factors. This helps to unravel complex
biological interactions. In addition, it includes methods to evaluate the statistical significance
of these associations, providing a robust framework for multi-omics data integration and
analysis. This package is ideal for researchers in computational biology, bioinformatics,
and systems biology seeking a comprehensive tool for understanding interdependencies in
omics data.
Author: Gaojianyong Wang [aut, cre]
Maintainer: Gaojianyong Wang <gjywang@gmail.com>
Diff between conMItion versions 0.2.1 dated 2025-09-29 and 0.3.0 dated 2026-04-14
DESCRIPTION | 8 +- MD5 | 55 ++++++++-------- NAMESPACE | 29 +++++++- R/ComputeEntropy.R | 114 +++++++++++---------------------- R/ComputeMatrix.R | 138 +++++------------------------------------ R/ComputeMutualInformation.R | 116 ++++++++++------------------------ R/ComputePermutation.R | 141 +++++------------------------------------- R/helper_params.R |only R/zzz.R |only man/CMIBiCondimat2mat.Rd | 6 - man/CMIBiCondimat2matPermu.Rd | 8 +- man/CMIBiCondimat2vec.Rd | 6 - man/CMIBiCondimat2vecPermu.Rd | 8 +- man/CMImat2mat.Rd | 6 - man/CMImat2matPermu.Rd | 8 +- man/CMImat2vec.Rd | 6 - man/CMImat2vecPermu.Rd | 8 +- man/MImat2mat.Rd | 6 - man/MImat2matPermu.Rd | 8 +- man/MImat2vec.Rd | 6 - man/MImat2vecPermu.Rd | 8 +- man/getCMI.Rd | 6 - man/getCMIBiCondi.Rd | 6 - man/getEntropy.Rd | 6 - man/getEntropyBi.Rd | 6 - man/getEntropyQuadri.Rd | 6 - man/getEntropyTri.Rd | 6 - man/getMI.Rd | 6 - man/getMIBi.Rd | 6 - man/resolve_params.Rd |only 30 files changed, 235 insertions(+), 498 deletions(-)
Title: Spatial Regression Models with Compositional Data
Description: Spatial and non-spatial regression models with compositional responses (and compositional predictors) using the alpha--transformation. Relevant papers include: Tsagris M. and Pantazis Y. (2026), <doi:10.48550/arXiv.2510.12663>, Tsagris M. (2015), <https://soche.cl/chjs/volumes/06/02/Tsagris(2015).pdf>, Tsagris M.T., Preston S. and Wood A.T.A. (2011), <doi:10.48550/arXiv.1106.1451>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between CompositionalSR versions 1.3 dated 2026-04-07 and 1.4 dated 2026-04-14
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/CompositionalSR-package.Rd | 4 ++-- man/ice.aesf.Rd | 1 - 4 files changed, 9 insertions(+), 10 deletions(-)
More information about CompositionalSR at CRAN
Permanent link
Title: Anything to 'POSIXct' or 'Date' Converter
Description: Convert input in any one of character, integer, numeric, factor,
or ordered type into 'POSIXct' (or 'Date') objects, using one of a number of
predefined formats, and relying on Boost facilities for date and time parsing.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between anytime versions 0.3.12 dated 2025-07-14 and 0.3.13 dated 2026-04-14
anytime-0.3.12/anytime/inst/doc/anytime-introduction.Rnw |only anytime-0.3.12/anytime/vignettes/anytime-intro.pdf |only anytime-0.3.12/anytime/vignettes/anytime-introduction.Rnw |only anytime-0.3.13/anytime/ChangeLog | 32 ++++++++++ anytime-0.3.13/anytime/DESCRIPTION | 13 ++-- anytime-0.3.13/anytime/MD5 | 21 +++--- anytime-0.3.13/anytime/R/init.R | 29 ++++++--- anytime-0.3.13/anytime/R/utils.R | 3 anytime-0.3.13/anytime/build/partial.rdb |binary anytime-0.3.13/anytime/build/vignette.rds |binary anytime-0.3.13/anytime/inst/NEWS.Rd | 14 +++- anytime-0.3.13/anytime/inst/doc/anytime-introduction.pdf |binary anytime-0.3.13/anytime/inst/doc/anytime-introduction.pdf.asis |only anytime-0.3.13/anytime/vignettes/anytime-introduction.pdf.asis |only 14 files changed, 85 insertions(+), 27 deletions(-)
Title: Univariate Time Series Forecasting
Description: An engine for univariate time series forecasting using
different regression models in an autoregressive way. The engine
provides an uniform interface for applying the different models.
Furthermore, it is extensible so that users can easily apply their
own regression models to univariate time series forecasting and
benefit from all the features of the engine, such as preprocessings
or estimation of forecast accuracy.
Author: Maria Pilar Frias-Bustamante [aut] ,
Francisco Martinez [aut, cre, cph]
Maintainer: Francisco Martinez <fmartin@ujaen.es>
Diff between utsf versions 1.3.1 dated 2025-10-23 and 1.3.2 dated 2026-04-14
DESCRIPTION | 8 - MD5 | 26 ++--- NEWS.md | 5 R/build_models.R | 10 + R/do_tuneGrid.R | 7 - R/main.R | 32 +++--- R/print_utsf.R | 22 +++- build/vignette.rds |binary inst/doc/utsf.R | 18 +-- inst/doc/utsf.Rmd | 48 +++++---- inst/doc/utsf.html | 259 ++++++++++++++++++++++++++------------------------- man/create_model.Rd | 21 ++-- man/forecast.utsf.Rd | 2 vignettes/utsf.Rmd | 48 +++++---- 14 files changed, 274 insertions(+), 232 deletions(-)
Title: Individual Diversity-Area Relationships
Description: Computes and tests individual (species, phylogenetic and functional) diversity-area relationships, i.e., how species-, phylogenetic- and functional-diversity varies with spatial scale around the individuals of some species in a community. See applications of these methods in Wiegand et al. (2007) <doi:10.1073/pnas.0705621104> or Chacon-Labella et al. (2016) <doi:10.1007/s00442-016-3547-z>.
Author: Marcelino de la Cruz [aut, cre] ,
Etienne Laliberte [ctb]
Maintainer: Marcelino de la Cruz <marcelino.delacruz@urjc.es>
Diff between idar versions 1.6 dated 2025-05-01 and 1.7 dated 2026-04-14
DESCRIPTION | 23 ++++++++++++++--------- MD5 | 19 ++++++++++++++----- NAMESPACE | 9 +++++++-- R/fdisp.R |only R/gowdis.R |only data/dummy.rda |only data/tussock.rda |only man/dummy.Rd |only man/fdis.Rd | 2 +- man/fdisp.Rd |only man/gowdis.Rd |only man/isar.Rd | 4 ++-- man/tussock.Rd |only src/gowdisC.c |only src/init.c | 13 ++++++++++++- 15 files changed, 50 insertions(+), 20 deletions(-)
Title: Evaluation of Presence-Absence Models
Description: Collection of functions to evaluate presence-absence models. It
comprises functions to adjust discrimination statistics for the
representativeness effect through case-weighting, along with functions for
visualizing the outcomes. Originally outlined in:
Jiménez-Valverde (2022) The uniform AUC: dealing with the
representativeness effect in presence-absence models. Methods Ecol. Evol,
13, 1224-1236.
Author: Alberto Jimenez-Valverde [aut, cre]
Maintainer: Alberto Jimenez-Valverde <alberto.jimenez.valverde@gmail.com>
Diff between vandalico versions 0.2.1 dated 2026-01-08 and 0.2.2 dated 2026-04-14
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 10 ++++++++++ R/AUCuniform.2.R | 14 ++++++++++---- R/AUCuniform.R | 5 +++-- man/AUCuniform.2.Rd | 4 ++-- man/AUCuniform.Rd | 5 +++-- 7 files changed, 38 insertions(+), 20 deletions(-)
Title: Estimation of the ROC Curve and the AUC for Complex Survey Data
Description: Estimate the receiver operating characteristic (ROC) curve, area under the curve (AUC) and optimal cut-off points for individual classification taking into account complex sampling designs when working with complex survey data. Methods implemented in this package are described in: A. Iparragirre, I. Barrio, I. Arostegui (2024) <doi:10.1002/sta4.635>; A. Iparragirre, I. Barrio, J. Aramendi, I. Arostegui (2022) <doi:10.2436/20.8080.02.121>; A. Iparragirre, I. Barrio (2024) <doi:10.1007/978-3-031-65723-8_7>.
Author: Amaia Iparragirre [aut, cre, cph] ,
Irantzu Barrio [aut],
Inmaculada Arostegui [aut]
Maintainer: Amaia Iparragirre <amaia.iparragirre@ehu.eus>
Diff between svyROC versions 1.0.0 dated 2024-10-25 and 1.1.0 dated 2026-04-14
DESCRIPTION | 14 +++++++------- MD5 | 21 +++++++++++++++------ NAMESPACE | 9 +++++++++ NEWS.md | 4 ++++ R/ci.wauc.R |only R/example_variables_wroc_2.R |only R/ht.indep.R |only R/ht.paired.R |only R/wauc.R | 13 +++++++------ README.md | 4 ++++ data/example_variables_wroc_2.rda |only inst/CITATION | 10 +++++----- man/ci.wauc.Rd |only man/example_variables_wroc_2.Rd |only man/ht.indep.Rd |only man/ht.paired.Rd |only 16 files changed, 51 insertions(+), 24 deletions(-)
Title: Graphical User Interface with Integrated 'Diagrammer' for
'Lavaan'
Description: Provides a graphical user interface with an
integrated diagrammer for latent variable models from the 'lavaan' package.
It offers two core functions: first, lavaangui() launches a web application
that allows users to specify models by drawing path diagrams, fitting them,
assessing model fit, and more; second, plot_lavaan() creates interactive
path diagrams from models specified in 'lavaan'. After customizing a diagram
interactively, export_plot() saves it to a file, enabling reproducible
scripts without sacrificing fine-grained control over appearance.
Karch (2024) <doi: 10.1080/10705511.2024.2420678> contains a tutorial.
Author: Julian D. Karch [aut, cre, cph]
Maintainer: Julian D. Karch <j.d.karch@fsw.leidenuniv.nl>
Diff between lavaangui versions 0.3.2 dated 2025-11-30 and 0.4.0 dated 2026-04-14
lavaangui-0.3.2/lavaangui/inst/www/assets/index-13a8ffa6.js |only lavaangui-0.3.2/lavaangui/inst/www/assets/index-7e3ae6b2.css |only lavaangui-0.3.2/lavaangui/inst/www/assets/svelte-fdfc2579.js |only lavaangui-0.4.0/lavaangui/DESCRIPTION | 20 ++- lavaangui-0.4.0/lavaangui/MD5 | 41 ++++--- lavaangui-0.4.0/lavaangui/NAMESPACE | 2 lavaangui-0.4.0/lavaangui/NEWS.md | 20 +++ lavaangui-0.4.0/lavaangui/R/componentLavInspect.R | 2 lavaangui-0.4.0/lavaangui/R/constants.R | 4 lavaangui-0.4.0/lavaangui/R/export_plot.R |only lavaangui-0.4.0/lavaangui/R/functionsServer.R | 34 +++++- lavaangui-0.4.0/lavaangui/R/lavaangui-package.R |only lavaangui-0.4.0/lavaangui/R/lavaangui.R | 2 lavaangui-0.4.0/lavaangui/R/plot_lavaan.R | 38 +++++-- lavaangui-0.4.0/lavaangui/R/remove_layouts.R |only lavaangui-0.4.0/lavaangui/R/serverImageExporter.R |only lavaangui-0.4.0/lavaangui/R/serverLavaanRun.R | 54 ++++------ lavaangui-0.4.0/lavaangui/R/serverLayout.R | 2 lavaangui-0.4.0/lavaangui/R/serverUsersLayoutSaver.R |only lavaangui-0.4.0/lavaangui/R/start_app.R | 59 ++++++++--- lavaangui-0.4.0/lavaangui/build |only lavaangui-0.4.0/lavaangui/inst/www/assets/index-07680a7c.css |only lavaangui-0.4.0/lavaangui/inst/www/assets/index-e0991477.js |only lavaangui-0.4.0/lavaangui/inst/www/assets/svelte-d0c1ce0e.js |only lavaangui-0.4.0/lavaangui/inst/www/index.html | 6 - lavaangui-0.4.0/lavaangui/man/export_plot.Rd |only lavaangui-0.4.0/lavaangui/man/lavaangui-package.Rd |only lavaangui-0.4.0/lavaangui/man/plot_lavaan.Rd | 28 ++++- lavaangui-0.4.0/lavaangui/man/remove_layouts.Rd |only 29 files changed, 215 insertions(+), 97 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb] ,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between insight versions 1.4.6 dated 2026-02-04 and 1.5.0 dated 2026-04-14
DESCRIPTION | 20 - MD5 | 71 ++- NAMESPACE | 54 ++ NEWS.md | 25 + R/find_formula.R | 25 + R/find_parameters_gam.R | 10 R/find_parameters_other.R | 2 R/get_data.R | 16 R/get_datagrid.R | 3 R/get_parameters_gam.R | 15 R/get_parameters_others.R | 2 R/get_predicted.R | 110 ++++++ R/get_simulated.R |only R/get_simulated_helper.R |only R/get_statistic.R | 23 - R/helper_functions.R | 188 ---------- R/is_model.R | 6 R/link_function.R | 5 R/model_info.R | 18 R/utils_model_info.R | 5 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/display.html | 374 ++++++++++---------- man/get_predicted.Rd | 16 man/get_simulated.Rd |only man/get_statistic.Rd | 8 man/model_info.Rd | 3 tests/testthat/test-FE-formula.R | 2 tests/testthat/test-blmer.R | 2 tests/testthat/test-epiR.R | 6 tests/testthat/test-gam.R | 8 tests/testthat/test-gamm.R | 1 tests/testthat/test-get_predicted.R | 1 tests/testthat/test-get_residuals.R | 3 tests/testthat/test-get_simulated.R |only tests/testthat/test-mgcv.R | 39 ++ tests/testthat/test-nestedLogit.R | 657 +++++++----------------------------- tests/testthat/test-rstpm2.R |only 39 files changed, 751 insertions(+), 969 deletions(-)
Title: Processing Time Series Data Using the Matching Pursuit Algorithm
Description: Provides tools for analysing and decomposing time series data using the Matching Pursuit (MP) algorithm, a greedy signal decomposition technique that represents complex signals as a linear combination of simpler functions (called atoms) selected from a redundant dictionary. For more details see Mallat and Zhang (1993) <doi:10.1109/78.258082>, Pati et al. (1993) <doi:10.1109/ACSSC.1993.342465>, Elad (2010) <doi:10.1007/978-1-4419-7011-4> and Różański (2024) <doi:10.1145/3674832>.
Author: Artur Gramacki [aut, cre] ,
Jaroslaw Gramacki [ctb] ,
Piotr T. Rożanski [ctb]
Maintainer: Artur Gramacki <a.gramacki@gmail.com>
Diff between MatchingPursuit versions 1.0.0 dated 2026-04-09 and 1.0.1 dated 2026-04-14
DESCRIPTION | 8 +-- MD5 | 42 +++++++++---------- NEWS.md | 10 ++++ R/check.checksum.R | 3 - R/clear.cache.R | 10 ++++ R/empi.execute.R | 5 ++ R/empi.install.R | 56 +++++++++++++++++--------- R/empi2tf.R | 17 ++++---- R/filters.coeff.R | 13 +++--- R/gabor.fun.R | 8 +-- R/read.csv.signals.R | 4 + R/read.edf.signals.R | 6 +- R/read.empi.db.file.R | 20 ++++----- R/sig2bin.R | 7 +++ inst/doc/MatchingPursuit.R | 14 +++++- inst/doc/MatchingPursuit.Rmd | 14 +++++- inst/doc/MatchingPursuit.html | 89 ++++++++++++++++++++++++------------------ man/empi.execute.Rd | 3 - man/empi.install.Rd | 17 +++++--- man/read.empi.db.file.Rd | 6 +- man/sig2bin.Rd | 7 +++ vignettes/MatchingPursuit.Rmd | 14 +++++- 22 files changed, 244 insertions(+), 129 deletions(-)
More information about MatchingPursuit at CRAN
Permanent link
Title: Legends for Maps
Description: Create legends for maps and other graphics. Thematic maps need to
be accompanied by legible legends to be fully comprehensible. This package
offers a wide range of legends useful for cartography, some of which may
also be useful for other types of graphics.
Author: Timothee Giraud [cre, aut]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between maplegend versions 0.6.1 dated 2026-04-10 and 0.6.2 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS.md | 8 ++++++++ R/leg.R | 9 +++++++++ R/lg_choro.R | 3 --- R/lg_choro_horiz.R | 3 --- R/lg_choro_line.R | 3 --- R/lg_choro_point.R | 3 --- R/lg_choro_point_horiz.R | 3 --- R/lg_choro_symb.R | 3 --- R/lg_cont.R | 2 +- R/lg_cont_horiz.R | 2 +- R/lg_grad_line.R | 3 --- R/lg_utils.R | 47 ++++++++++++++++++++++++++++------------------- inst/tinytest/tests.R | 35 +++++++++++------------------------ 15 files changed, 75 insertions(+), 83 deletions(-)
Title: A Comprehensive Toolkit for Clinical HLA Informatics
Description: A comprehensive toolkit for clinical Human Leukocyte Antigen (HLA) informatics, built on 'tidyverse' <https://tidyverse.tidyverse.org/> principles and making use of genotype list string (GL string, Mack et al. (2023) <doi:10.1111/tan.15126>) for storing and computing HLA genotype data. Specific functionalities include: coercion of HLA data in tabular format to and from GL string; calculation of matching and mismatching in all directions, with multiple output formats; automatic formatting of HLA data for searching within a GL string; truncation of molecular HLA data to a specific number of fields; and reading HLA genotypes in HML files and extracting the GL string. This library is intended for research use. Any application making use of this package in a clinical setting will need to be independently validated according to local regulations.
Author: Nicholas Brown [cre, aut] ,
Busra Coskun [aut]
Maintainer: Nicholas Brown <nicholas.brown@pennmedicine.upenn.edu>
Diff between immunogenetr versions 1.1.0 dated 2026-04-06 and 1.2.0 dated 2026-04-14
DESCRIPTION | 6 - MD5 | 28 ++-- NAMESPACE | 2 NEWS.md | 128 +++++++++++---------- R/HLA_match_summary_HCT.R | 159 +++++++++++++++----------- man/GLstring_gene_copies_combine.Rd | 64 +++++----- man/HLA_dictionary.Rd | 50 ++++---- man/HLA_match_summary_HCT.Rd | 14 ++ man/HLA_mismatched_alleles.Rd | 122 ++++++++++---------- man/HLA_typing_1.Rd | 52 ++++---- man/HLA_typing_LIS.Rd | 56 ++++----- man/Haplotype_frequencies.Rd | 56 ++++----- man/mismatch_table_2010.Rd | 52 ++++---- man/mismatch_table_2016.Rd | 52 ++++---- tests/testthat/test-HLA_match_summary_HCT.R | 165 ++++++++++++++++++++++++++++ 15 files changed, 605 insertions(+), 401 deletions(-)
Title: Distributions Hermite Polynomial Approximation
Description: Multivariate conditional and marginal densities, moments, cumulative distribution functions as well as binary choice and sample selection models based on the Hermite polynomial approximation which was proposed and described by A. Gallant and D. W. Nychka (1987) <doi:10.2307/1913241>.
Author: Bogdan Potanin [aut, cre, ctb],
Sofiia Dolgikh [ctb]
Maintainer: Bogdan Potanin <bogdanpotanin@gmail.com>
Diff between hpa versions 1.3.3 dated 2023-11-29 and 1.3.4 dated 2026-04-14
DESCRIPTION | 20 +- MD5 | 98 +++++----- R/RcppExports.R | 100 +++++----- R/hpaBinary_generics.R | 10 - R/hpaML_generics.R | 14 - R/hpaSelection_generics.R | 21 +- man/bspline.Rd | 16 - man/coef.hpaBinary.Rd | 4 man/coef.hpaML.Rd | 4 man/coef.hpaSelection.Rd | 10 - man/dnorm_parallel.Rd | 2 man/hpaBinary.Rd | 135 +++++++------- man/hpaDist.Rd | 383 ++++++++++++++++++++--------------------- man/hpaDist0.Rd | 44 ++-- man/hpaML.Rd | 128 ++++++------- man/hpaSelection.Rd | 107 +++++------ man/hsaDist.Rd | 30 +-- man/logLik.hpaBinary.Rd | 2 man/logLik.hpaML.Rd | 2 man/logLik.hpaSelection.Rd | 3 man/normalMoment.Rd | 18 - man/plot.hpaBinary.Rd | 6 man/plot.hpaML.Rd | 2 man/plot.hpaSelection.Rd | 2 man/pnorm_parallel.Rd | 6 man/polynomialIndex.Rd | 28 +- man/predict.hpaBinary.Rd | 2 man/predict.hpaML.Rd | 2 man/predict.hpaSelection.Rd | 4 man/predict_hpaBinary.Rd | 2 man/predict_hpaML.Rd | 2 man/predict_hpaSelection.Rd | 2 man/print_summary_hpaBinary.Rd | 2 man/summary.hpaSelection.Rd | 2 man/summary_hpaSelection.Rd | 2 man/truncatedNormalMoment.Rd | 31 +-- man/vcov.hpaBinary.Rd | 4 man/vcov.hpaML.Rd | 4 man/vcov.hpaSelection.Rd | 4 src/ParallelFunctions.cpp | 21 +- src/RcppExports.cpp | 90 ++++----- src/hpa0.cpp | 85 ++++----- src/hpaBinary.cpp | 56 ++--- src/hpaML.cpp | 47 ++--- src/hpaMain.cpp | 84 ++++---- src/hpaSelection.cpp | 18 - src/hpaValidation.cpp | 7 src/normalMoments.cpp | 42 ++-- src/polynomialIndex.cpp | 30 +-- src/spline.cpp | 20 +- 50 files changed, 883 insertions(+), 875 deletions(-)
Title: Pretty 'ggplot2' Themes
Description: A set of complete 'ggplot2' themes and refine
functions for plot appearance. The themes are designed to work
seamlessly with the refine functions, which adjust gridlines and axis
elements to suit the particulars of a plot.
Author: David Hodge [aut, cre, cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggrefine versions 0.1.0 dated 2026-03-30 and 0.2.0 dated 2026-04-14
ggrefine-0.1.0/ggrefine/man/theme_black.Rd |only ggrefine-0.1.0/ggrefine/man/theme_oat.Rd |only ggrefine-0.1.0/ggrefine/man/theme_stone.Rd |only ggrefine-0.1.0/ggrefine/man/theme_white.Rd |only ggrefine-0.2.0/ggrefine/DESCRIPTION | 15 - ggrefine-0.2.0/ggrefine/MD5 | 37 +- ggrefine-0.2.0/ggrefine/NAMESPACE | 7 ggrefine-0.2.0/ggrefine/NEWS.md | 4 ggrefine-0.2.0/ggrefine/R/refine.R | 32 +- ggrefine-0.2.0/ggrefine/R/theme.R | 145 +--------- ggrefine-0.2.0/ggrefine/README.md | 76 +++-- ggrefine-0.2.0/ggrefine/man/figures/README-example-1.png |binary ggrefine-0.2.0/ggrefine/man/figures/README-unnamed-chunk-2-1.png |binary ggrefine-0.2.0/ggrefine/man/figures/logo.png |binary ggrefine-0.2.0/ggrefine/man/figures/logo.svg | 4 ggrefine-0.2.0/ggrefine/man/refine_classic.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_fusion.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_modern.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_none.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_void.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/theme_dark.Rd |only ggrefine-0.2.0/ggrefine/man/theme_grey.Rd |only ggrefine-0.2.0/ggrefine/man/theme_light.Rd |only 23 files changed, 199 insertions(+), 281 deletions(-)
Title: Backfill Bayesian Optimal Interval Design Using Efficacy and
Toxicity
Description: Implements the Backfill Bayesian Optimal Interval Design (BF-BOIN-ET),
a novel clinical trial methodology for dose optimization that simultaneously consider both efficacy
and toxicity outcome as described in (Takeda et al (2025) <doi:10.1002/pst.2470>).
The package has been extended to include a seamless two-stage phase I/II trial design with backfill
and joint efficacy and toxicity monitoring as described in (Takeda et al (2026) <doi:10.1002/pst.70092>).
Author: Jing Zhu [cre, aut],
Kentaro Takeda [aut],
Yimer Belay Birlie [aut]
Maintainer: Jing Zhu <zhujing716@gmail.com>
Diff between bfboinet versions 0.4.0 dated 2025-06-03 and 1.0.0 dated 2026-04-14
DESCRIPTION | 27 MD5 | 18 NAMESPACE | 7 NEWS.md |only R/backboinet.R | 1941 ++++++++++++++++++------------------- R/backboinetr.R | 2229 +++++++++++++++++++++---------------------- R/bfboinet_rp2.R |only R/select_mtd.R |only README.md |only man/get.oc.backboinet.Rd | 21 man/get.oc.backboinet_rp2.Rd |only man/get.oc.backboinetr.Rd | 23 man/select_mtd.Rd |only 13 files changed, 2142 insertions(+), 2124 deletions(-)
Title: Download and Import Open Street Map Data Extracts
Description: Match, download, convert and import Open Street Map data extracts
obtained from several providers.
Author: Andrea Gilardi [aut, cre] ,
Robin Lovelace [aut] ,
Barry Rowlingson [ctb] ,
Salva Fernandez [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/395>),
Nicholas Potter [rev] for
rOpenSci, see
<https://github.com/ropensci/soft [...truncated...]
Maintainer: Andrea Gilardi <andrea.gilardi@unimib.it>
Diff between osmextract versions 0.5.3 dated 2025-04-09 and 0.6.0 dated 2026-04-14
DESCRIPTION | 17 MD5 | 81 +-- NAMESPACE | 1 NEWS.md | 347 ++++++------- R/download.R | 166 ++---- R/find.R | 59 -- R/get-boundary.R | 17 R/get-key-values.R | 2 R/get.R | 46 + R/osmextract-package.R | 6 R/utils.R | 39 - R/vectortranslate.R | 225 +++++--- build/vignette.rds |binary data/bbbike_zones.rda |binary data/geofabrik_zones.rda |binary data/openstreetmap_fr_zones.rda |binary inst/doc/osmextract.R | 52 +- inst/doc/osmextract.Rmd | 112 ++-- inst/doc/osmextract.html | 778 +++++++++++++++--------------- inst/doc/providers.html | 6 inst/doc/providers_comparisons.html | 16 inst/doc/tips-and-tricks.R |only inst/doc/tips-and-tricks.Rmd |only inst/doc/tips-and-tricks.html |only man/bbbike_zones.Rd | 2 man/figures/README-iow1-1.png |binary man/figures/README-points-lines-iow-1.png |binary man/figures/README-points-lines-iow-2.png |binary man/geofabrik_zones.Rd | 2 man/get_default_osmconf_ini.Rd |only man/oe_download.Rd | 26 - man/oe_download_directory.Rd | 8 man/oe_find.Rd | 45 - man/oe_get.Rd | 29 - man/oe_get_boundary.Rd | 17 man/oe_match.Rd | 7 man/oe_read.Rd | 6 man/oe_vectortranslate.Rd | 33 - man/openstreetmap_fr_zones.Rd | 2 tests/testthat/test-download.R | 1 tests/testthat/test-get.R | 40 + tests/testthat/test-read.R | 2 vignettes/osmextract.Rmd | 112 ++-- vignettes/tips-and-tricks.Rmd |only 44 files changed, 1250 insertions(+), 1052 deletions(-)