Thu, 19 Jan 2017

Package shadow updated to version 0.2.0 with previous version 0.1.3 dated 2016-12-06

Title: R Package for Geometric Shade Calculations
Description: Functions for calculating (1) shade height at a single point, (2) shaded proportion of a building facade; (3) a polygonal layer of shade footprints on the ground; and (4) Sky View Factor value at a single point. Typical inputs include a polygonal layer of buildings outline along with the height of each building, sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: converting polygons to line segments, finding segment azimuth, shifting segments by azimuth and distance, and constructing the footprint of a line of sight between an observer and the sun.
Author: Michael Dorman [aut, cre], Evyatar Erell [ctb], Itai Kloog [ctb], Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>

Diff between shadow versions 0.1.3 dated 2016-12-06 and 0.2.0 dated 2017-01-19

 shadow-0.1.3/shadow/R/deg_rad.R                |only
 shadow-0.2.0/shadow/DESCRIPTION                |   11 ++++---
 shadow-0.2.0/shadow/MD5                        |   33 +++++++++++++----------
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 shadow-0.2.0/shadow/R/shadeHeight.R            |   35 ++++++++++++-------------
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 shadow-0.2.0/shadow/R/shiftAz.R                |    2 -
 shadow-0.2.0/shadow/R/sunLocation.R            |    4 +-
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 shadow-0.2.0/shadow/inst/doc/introduction.Rmd  |   14 +++++-----
 shadow-0.2.0/shadow/inst/doc/introduction.html |   31 ++++++++++++----------
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 shadow-0.2.0/shadow/vignettes/introduction.Rmd |   14 +++++-----
 21 files changed, 90 insertions(+), 77 deletions(-)

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Package rUnemploymentData updated to version 1.1.0 with previous version 1.0.0 dated 2015-01-04

Title: Data and Functions for USA State and County Unemployment Data
Description: Contains data and visualization functions for USA unemployment data. Data comes from the US Bureau of Labor Statistics (BLS). State data is in ?df_state_unemployment and covers 2000-2013. County data is in ?df_county_unemployment and covers 1990-2013. Choropleth maps of the data can be generated with ?state_unemployment_choropleth() and ?county_unemployment_choropleth() respectively.
Author: Ari Lamstein <ari@lamsteinconsulting.com>
Maintainer: Ari Lamstein <ari@lamsteinconsulting.com>

Diff between rUnemploymentData versions 1.0.0 dated 2015-01-04 and 1.1.0 dated 2017-01-19

 rUnemploymentData-1.0.0/rUnemploymentData/build                                          |only
 rUnemploymentData-1.0.0/rUnemploymentData/inst/doc                                       |only
 rUnemploymentData-1.0.0/rUnemploymentData/vignettes                                      |only
 rUnemploymentData-1.1.0/rUnemploymentData/DESCRIPTION                                    |   23 ++----
 rUnemploymentData-1.1.0/rUnemploymentData/MD5                                            |   38 +++-------
 rUnemploymentData-1.1.0/rUnemploymentData/NAMESPACE                                      |    4 -
 rUnemploymentData-1.1.0/rUnemploymentData/R/county.R                                     |   22 +++--
 rUnemploymentData-1.1.0/rUnemploymentData/R/state.R                                      |   17 ++--
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 rUnemploymentData-1.1.0/rUnemploymentData/man/build_county_df.Rd                         |    3 
 rUnemploymentData-1.1.0/rUnemploymentData/man/build_state_df.Rd                          |    3 
 rUnemploymentData-1.1.0/rUnemploymentData/man/county_unemployment_choropleth.Rd          |   13 +--
 rUnemploymentData-1.1.0/rUnemploymentData/man/df_county_unemployment.Rd                  |    8 +-
 rUnemploymentData-1.1.0/rUnemploymentData/man/df_state_unemployment.Rd                   |    7 +
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 rUnemploymentData-1.1.0/rUnemploymentData/man/get_state_unemployment_df.Rd               |    3 
 rUnemploymentData-1.1.0/rUnemploymentData/man/state_unemployment_choropleth.Rd           |   13 +--
 19 files changed, 88 insertions(+), 81 deletions(-)

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Package rcompanion updated to version 1.3.0 with previous version 1.2.0 dated 2016-12-14

Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of Extension Education Program Evaluation in R" and "An R Companion for the Handbook of Biological Statistics". Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>

Diff between rcompanion versions 1.2.0 dated 2016-12-14 and 1.3.0 dated 2017-01-19

 DESCRIPTION                              |    8 +--
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 R/nagelkerke.r                           |   17 +++---
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 42 files changed, 455 insertions(+), 330 deletions(-)

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Package nlme updated to version 3.1-129 with previous version 3.1-128 dated 2016-05-10

Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), R-core [aut, cre]
Maintainer: R-core <R-core@R-project.org>

Diff between nlme versions 3.1-128 dated 2016-05-10 and 3.1-129 dated 2017-01-19

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 nlme-3.1-129/nlme/ChangeLog               |   16 ++++++++++
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 23 files changed, 242 insertions(+), 122 deletions(-)

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Package MetaLandSim updated to version 0.5.5 with previous version 0.5.4 dated 2016-10-03

Title: Landscape and Range Expansion Simulation
Description: Tools to generate random landscape graphs, evaluate species occurrence in dynamic landscapes, simulate future landscape occupation and evaluate range expansion when new empty patches are available (e.g. as a result of climate change).
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro Beja.
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>

Diff between MetaLandSim versions 0.5.4 dated 2016-10-03 and 0.5.5 dated 2017-01-19

 DESCRIPTION                |    8 ++---
 MD5                        |    8 ++---
 R/spom.R                   |   64 +++++++++++++++++++++++++++++++++++++++++++--
 inst/doc/MetaLandSim.pdf   |binary
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 5 files changed, 72 insertions(+), 12 deletions(-)

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Package deTestSet updated to version 1.1.5 with previous version 1.1.3 dated 2016-12-06

Title: Test Set for Differential Equations
Description: Solvers and test set for stiff and non-stiff differential equations, and differential algebraic equations.
Author: Karline Soetaert [aut, cre], Jeff Cash [aut], Francesca Mazzia [aut], LAPACK authors [cph]
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>

Diff between deTestSet versions 1.1.3 dated 2016-12-06 and 1.1.5 dated 2017-01-19

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Package bytescircle updated to version 1.1 with previous version 1.0 dated 2016-11-16

Title: Statistics About Bytes Contained in a File as a Circle Plot
Description: Shows statistics about bytes contained in a file as a circle graph of deviations from mean in sigma increments. The function can be useful for statistically analyze the content of files in a glimpse: text files are shown as a green centered crown, compressed and encrypted files should be shown as equally distributed variations with a very low CV (sigma/mean), and other types of files can be classified between these two categories depending on their text vs binary content, which can be useful to quickly determine how information is stored inside them (databases, multimedia files, etc).
Author: Roberto S. Galende [aut, cre]
Maintainer: Roberto S. Galende <roberto.s.galende@gmail.com>

Diff between bytescircle versions 1.0 dated 2016-11-16 and 1.1 dated 2017-01-19

 DESCRIPTION                  |   12 +++---
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 10 files changed, 208 insertions(+), 108 deletions(-)

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Package sos updated to version 1.4-1 with previous version 1.3-9 dated 2016-06-21

Title: Search Contributed R Packages, Sort by Package
Description: Search contributed R packages, sort by package.
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Maintainer: Spencer Graves <spencer.graves@prodsyse.com>

Diff between sos versions 1.3-9 dated 2016-06-21 and 1.4-1 dated 2017-01-19

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Package overlapping updated to version 1.4.0 with previous version 1.3 dated 2016-06-24

Title: Estimation of Overlapping in Empirical Distributions
Description: Functions for estimating the overlapping area of two or more empirical distributions (special unofficial edition).
Author: Massimiliano Pastore
Maintainer: Massimiliano Pastore <massimiliano.pastore@unipd.it>

Diff between overlapping versions 1.3 dated 2016-06-24 and 1.4.0 dated 2017-01-19

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 7 files changed, 98 insertions(+), 67 deletions(-)

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Package OSMscale updated to version 0.4.1 with previous version 0.3.5 dated 2016-09-21

Title: Add a Scale Bar to 'OpenStreetMap' Plots
Description: Functionality to handle and project lat-long coordinates, easily download background maps and add a correct scale bar to 'OpenStreetMap' plots in any map projection.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>

Diff between OSMscale versions 0.3.5 dated 2016-09-21 and 0.4.1 dated 2017-01-19

 DESCRIPTION             |   10 +++++-----
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 README.md               |   27 ++++++++++++++-------------
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 12 files changed, 163 insertions(+), 103 deletions(-)

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Package npsf updated to version 0.2.0 with previous version 0.1.9 dated 2016-09-02

Title: Nonparametric and Stochastic Efficiency and Productivity Analysis
Description: Provides a variety of tools for nonparametric and parametric efficiency measurement.
Author: Oleg Badunenko [aut, cre], Yaryna Kolomiytseva [aut], Pavlo Mozharovskyi [aut]
Maintainer: Oleg Badunenko <oleg.badunenko@port.ac.uk>

Diff between npsf versions 0.1.9 dated 2016-09-02 and 0.2.0 dated 2017-01-19

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Package nopaco updated to version 0.99.8 with previous version 0.99.7 dated 2017-01-18

Title: Non-Parametric Concordance Coefficient: A Non-Parametric Concordance Test
Description: A non-parametric test for multi-observer concordance and differences between concordances in (un)balanced data.
Author: Rowan Kuiper [cre, aut], Remco Hoogenboezem [aut], Sjoerd Huisman [ctb], google-sparsehash@googlegroups.com [aut, cph] (Copyright by Google Inc. as mentioned in inst/COPYRIGHTS, applies to all the files in the src/densehash directory)
Maintainer: Rowan Kuiper <r.kuiper.emc@gmail.com>

Diff between nopaco versions 0.99.7 dated 2017-01-18 and 0.99.8 dated 2017-01-19

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Package manipulateWidget updated to version 0.5.0 with previous version 0.4.0 dated 2017-01-05

Title: Add Even More Interactivity to Interactive Charts
Description: Like package 'manipulate' does for static graphics, this package helps to easily add controls like sliders, pickers, checkboxes, etc. that can be used to modify the input data or the parameters of an interactive chart created with package 'htmlwidgets'.
Author: Francois Guillem [aut, cre], RTE [cph], JJ Allaire [ctb]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>

Diff between manipulateWidget versions 0.4.0 dated 2017-01-05 and 0.5.0 dated 2017-01-19

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Package gapfill updated to version 0.9.5-2 with previous version 0.9.5 dated 2017-01-18

Title: Fill Missing Values in Satellite Data
Description: Tools to fill missing values in satellite data and to develop new gap-fill algorithms. The methods are tailored to data (images) observed at equally-spaced points in time. The package is illustrated with MODIS NDVI data.
Author: Florian Gerber
Maintainer: Florian Gerber <florian.gerber@math.uzh.ch>

Diff between gapfill versions 0.9.5 dated 2017-01-18 and 0.9.5-2 dated 2017-01-19

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New package dimRed with initial version 0.0.3
Package: dimRed
Title: A Framework for Dimensionality Reduction
Version: 0.0.3
Authors@R: person("Guido", "Kraemer", email = "gkraemer@bgc-jena.mpg.de", role = c("aut", "cre"))
Description: A collection of dimensionality reduction techniques from R packages and provides a common interface for calling the methods.
Depends: R (>= 3.0.0), methods, DRR
Suggests: MASS, Matrix, RANN, RSpectra, Rtsne, coRanking, diffusionMap, energy, fastICA, ggplot2, graphics, igraph, kernlab, lle, loe, optimx, pcaPP, scales, scatterplot3d, stats, testthat, tidyr, vegan
License: GPL-3 | file LICENSE
URL: https://github.com/gdkrmr/dimRed
LazyData: true
Collate: 'misc.R' 'dimRedData-class.R' 'dataSets.R' 'dimRedMethod-class.R' 'dimRedResult-class.R' 'diffmap.R' 'dimRed.R' 'drr.R' 'embed.R' 'fastica.R' 'graph_embed.R' 'hlle.R' 'isomap.R' 'kpca.R' 'leim.R' 'lle.R' 'loe.R' 'mds.R' 'mixColorSpaces.R' 'nmds.R' 'pca.R' 'plot.R' 'quality.R' 'rotate.R' 'soe.R' 'tsne.R'
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2017-01-19 08:53:22 UTC; gkraemer
Author: Guido Kraemer [aut, cre]
Maintainer: Guido Kraemer <gkraemer@bgc-jena.mpg.de>
Repository: CRAN
Date/Publication: 2017-01-19 15:15:02

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New package UncertainInterval with initial version 0.3.0
Package: UncertainInterval
Version: 0.3.0
Date: 2017-01-10
Title: Uncertain Area Methods for Cut-Point Determination in Tests
Authors@R: c(person("Hans", "Landsheer", role = c("aut", "cre"), email = "j.a.landsheer@uu.nl"))
Author: Hans Landsheer [aut, cre]
Maintainer: Hans Landsheer <j.a.landsheer@uu.nl>
Depends: R (>= 3.0.0)
Suggests: MASS
Description: Functions for the determination of an Uncertain Interval, i.e., a range of test scores that are inconclusive and do not allow a diagnosis, other than 'Uncertain'.
License: GPL (>= 2)
URL: http://r-forge.r-project.org/scm/?group_id=258
BugReports: http://r-forge.r-project.org/tracker/?group_id=258
RoxygenNote: 5.0.1
Imports: stats, utils, reshape2, rootSolve, nloptr
NeedsCompilation: no
Packaged: 2017-01-18 20:41:19 UTC; Hans
Repository: CRAN
Date/Publication: 2017-01-19 11:17:43

More information about UncertainInterval at CRAN
Permanent link

Package taxize updated to version 0.8.4 with previous version 0.8.0 dated 2016-12-16

Title: Taxonomic Information from Around the Web
Description: Interacts with a suite of web 'APIs' for taxonomic tasks, such as getting database specific taxonomic identifiers, verifying species names, getting taxonomic hierarchies, fetching downstream and upstream taxonomic names, getting taxonomic synonyms, converting scientific to common names and vice versa, and more.
Author: Scott Chamberlain [aut, cre], Eduard Szoecs [aut], Zachary Foster [aut], Carl Boettiger [ctb], Karthik Ram [ctb], Ignasi Bartomeus [ctb], John Baumgartner [ctb], James O'Donnell [ctb], Jari Oksanen [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between taxize versions 0.8.0 dated 2016-12-16 and 0.8.4 dated 2017-01-19

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 tests/testthat/test-itis_lsid.R         |    4 
 tests/testthat/test-itis_taxrank.R      |    4 
 tests/testthat/test-sci2comm.R          |    5 
 tests/testthat/test-synonyms.R          |   14 ++
 tests/testthat/test-tnrs.R              |   20 +--
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 79 files changed, 1148 insertions(+), 641 deletions(-)

More information about taxize at CRAN
Permanent link

Package microplot updated to version 1.0-16 with previous version 1.0-14 dated 2016-06-22

Title: R Graphics as Microplots (Sparklines) in 'LaTeX', 'HTML', 'Excel'
Description: Prepare lists of R graphics files to be used as microplots (sparklines) in tables in either 'LaTeX', 'HTML', or 'Excel' files. For 'LaTeX', use the 'Hmisc::latex' function or 'xtable::xtable' function with 'Sweave', 'knitr', 'rmarkdown', or 'Emacs' 'org-mode' to construct 'latex' tabular environments which include the graphs. For 'HTML' files, use either 'Emacs' 'org-mode' or the 'htmlTable::htmlTable' function to construct an 'HTML' file containing tables which include the graphs. For 'Excel' use on 'Windows', the file 'examples/irisExcel.xls' includes 'VBA' code which brings the individual panels into individual cells in the spreadsheet. Examples in the 'examples' subdirectory and demos are shown with 'lattice' graphics, 'base' graphics, and 'ggplot2' graphics. Examples for 'LaTeX' include 'Sweave' (both 'LaTeX'-style and 'Noweb'-style), 'knitr', 'emacs' 'org-mode', and 'rmarkdown' input files and their 'pdf' output files. Examples for 'HTML' include 'org-mode' and 'Rmd' input files and their webarchive 'HTML' output files. In addition, the 'as.orgtable' function can display a 'data.frame' in an 'org-mode' document.
Author: Richard M. Heiberger, with contributions from Karen Byron and Nooreen Dabbish.
Maintainer: Richard M. Heiberger <rmh@temple.edu>

Diff between microplot versions 1.0-14 dated 2016-06-22 and 1.0-16 dated 2017-01-19

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More information about microplot at CRAN
Permanent link

Package GSODR updated to version 1.0.0 with previous version 0.1.9 dated 2016-07-15

Title: Global Summary Daily Weather Data in R
Description: Provides automated downloading, parsing, cleaning, unit conversion and formatting of Global Surface Summary of the Day (GSOD) weather data from the from the USA National Climatic Data Center (NCDC) for use in R. All units are converted from from United States Customary System (USCS) units to International System of Units (SI). Stations may be individually checked for number of missing days defined by the user, where stations with too many missing observations are omitted. Only stations with valid reported latitude and longitude values are permitted in the final data. Additional useful variables, saturation vapour pressure (es), actual vapour pressure (ea) and relative humidity are calculated from the original data and included in the final data set. The resulting data include station identification information, state, country, latitude, longitude, elevation, weather observations and associated flags. Data may be automatically saved to disk. File output may be returned as a comma-separated values (CSV) or GeoPackage (GPKG) file. Additional data are included with this R package: a list of elevation values for stations between -60 and 60 degrees latitude derived from the Shuttle Radar Topography Measuring Mission (SRTM). For information on the GSOD data from NCDC, please see the GSOD readme.txt file available from, <http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre], Tomislav Hengl [aut], Andrew Nelson [aut]
Maintainer: Adam Sparks <adamhsparks@gmail.com>

Diff between GSODR versions 0.1.9 dated 2016-07-15 and 1.0.0 dated 2017-01-19

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Permanent link

New package dslabs with initial version 0.0.1
Package: dslabs
Title: Data Science Labs
Version: 0.0.1
Description: Datasets and functions that facilitate data analysis labs in data science courses and workshops.
Author: Rafael A. Irizarry
Maintainer: Rafael A. Irizarry <rafa@jimmy.harvard.edu>
Depends: R (>= 3.3.1)
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-01-19 04:25:53 UTC; ririzarr
Repository: CRAN
Date/Publication: 2017-01-19 11:17:45

More information about dslabs at CRAN
Permanent link

Wed, 18 Jan 2017

Package TLMoments updated to version 0.6.3.1 with previous version 0.6.3 dated 2017-01-16

Title: Calculate TL-Moments and Convert Them to Distribution Parameters
Description: Calculates empirical TL-moments (trimmed L-moments) of arbitrary order and trimming, and converts them to distribution parameters.
Author: Jona Lilienthal
Maintainer: Jona Lilienthal <lilienthal@statistik.tu-dortmund.de>

Diff between TLMoments versions 0.6.3 dated 2017-01-16 and 0.6.3.1 dated 2017-01-18

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More information about TLMoments at CRAN
Permanent link

Package shotGroups updated to version 0.7.3 with previous version 0.7.2 dated 2016-09-21

Title: Analyze Shot Group Data
Description: Analyzes shooting data with respect to group shape, precision, and accuracy. This includes graphical methods, descriptive statistics, and inference tests using standard, but also non-parametric and robust statistical methods. Implements distributions for radial error in bivariate normal variables. Works with files exported by OnTarget PC/TDS or Taran, as well as with custom data files in text format. Supports inference from range statistics like extreme spread. Includes a set of web-based graphical user interfaces.
Author: Daniel Wollschlaeger
Maintainer: Daniel Wollschlaeger <dwoll@kuci.org>

Diff between shotGroups versions 0.7.2 dated 2016-09-21 and 0.7.3 dated 2017-01-18

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More information about shotGroups at CRAN
Permanent link

Package rtweet updated to version 0.4.0 with previous version 0.3.7 dated 2016-11-15

Title: Collecting Twitter Data
Description: An implementation of calls designed to extract and organize Twitter data via Twitter's REST and stream APIs. Functions formulate and send API requests, convert response objects to more user friendly data structures---e.g., data frames---and provide some aesthetically pleasing visualizations for exploring the data.
Author: Michael W. Kearney [aut, cre]
Maintainer: Michael W. Kearney <mkearney@ku.edu>

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Package RSelenium updated to version 1.7.0 with previous version 1.6.2 dated 2016-12-02

Title: R Bindings for 'Selenium WebDriver'
Description: Provides a set of R bindings for the 'Selenium 2.0 WebDriver' (see <https://seleniumhq.github.io/docs/wd.html> for more information) using the 'JsonWireProtocol' (see <https://github.com/SeleniumHQ/selenium/wiki/JsonWireProtocol> for more information). 'Selenium 2.0 WebDriver' allows driving a web browser natively as a user would either locally or on a remote machine using the Selenium server it marks a leap forward in terms of web browser automation. Selenium automates web browsers (commonly referred to as browsers). Using RSelenium you can automate browsers locally or remotely.
Author: John Harrison [aut, cre] (R package RSelenium)
Maintainer: John Harrison <johndharrison0@gmail.com>

Diff between RSelenium versions 1.6.2 dated 2016-12-02 and 1.7.0 dated 2017-01-18

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Package rpostgis updated to version 1.1.1 with previous version 1.1.0 dated 2017-01-06

Title: R Interface to a 'PostGIS' Database
Description: Provides an interface between R and 'PostGIS'-enabled 'PostgreSQL' databases to transparently transfer spatial data. Both vector (points, lines, polygons) and raster data are supported in read and write modes. Also provides convenience functions to execute common procedures in 'PostgreSQL/PostGIS'.
Author: Mathieu Basille [aut], David Bucklin [aut, cre]
Maintainer: David Bucklin <dbucklin@ufl.edu>

Diff between rpostgis versions 1.1.0 dated 2017-01-06 and 1.1.1 dated 2017-01-18

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Package isdparser updated to version 0.2.0 with previous version 0.1.0 dated 2016-11-03

Title: Parse 'NOAA' Integrated Surface Data Files
Description: Tools for parsing 'NOAA' Integrated Surface Data ('ISD') files, described at <https://www.ncdc.noaa.gov/isd>. Data includes for example, wind speed and direction, temperature, cloud data, sea level pressure, and more. Includes data from approximately 35,000 stations worldwide, though best coverage is in North America/Europe/Australia. Data is stored as variable length ASCII character strings, with most fields optional. Included are tools for parsing entire files, or individual lines of data.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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Package immer updated to version 0.7-0 with previous version 0.6-0 dated 2016-10-28

Title: Item Response Models for Multiple Ratings
Description: Implements some item response models for multiple ratings, including the hierarchical rater model, conditional maximum likelihood estimation of linear logistic partial credit model and a wrapper function to the commercial FACETS program.
Author: Alexander Robitzsch [aut, cre], Jan Steinfeld [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>

Diff between immer versions 0.6-0 dated 2016-10-28 and 0.7-0 dated 2017-01-18

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Package gapfill updated to version 0.9.5 with previous version 0.9.3 dated 2016-05-04

Title: Fill Missing Values in Satellite Data
Description: Tools to fill missing values in satellite data and to develop new gap-fill algorithms. The methods are tailored to data (images) observed at equally-spaced points in time. The package is illustrated with MODIS NDVI data.
Author: Florian Gerber
Maintainer: Florian Gerber <florian.gerber@math.uzh.ch>

Diff between gapfill versions 0.9.3 dated 2016-05-04 and 0.9.5 dated 2017-01-18

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Permanent link

New package wdman with initial version 0.2.0
Package: wdman
Type: Package
Title: 'Webdriver'/'Selenium' Binary Manager
Version: 0.2.0
Authors@R: c( person("John", "Harrison", , "johndharrison0@gmail.com", role = c("aut", "cre"), comment = "R package wdman"))
Description: There are a number of binary files associated with the 'Webdriver'/'Selenium' project (see <http://www.seleniumhq.org/download/>, <https://sites.google.com/a/chromium.org/chromedriver/>, <https://github.com/mozilla/geckodriver>, <http://phantomjs.org/download.html> and <https://github.com/SeleniumHQ/selenium/wiki/InternetExplorerDriver> for more information). This package provides functions to download these binaries and to manage processes involving them.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.2)
Suggests: testthat, covr, knitr, rmarkdown
Imports: binman, assertthat, subprocess (>= 0.8.0), yaml, semver(>= 0.2.0)
URL: https://github.com/johndharrison/wdman
URLNote: https://github.com/johndharrison/wdman
BugReports: https://github.com/johndharrison/wdman/issues
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-01-18 11:51:52 UTC; john
Author: John Harrison [aut, cre] (R package wdman)
Maintainer: John Harrison <johndharrison0@gmail.com>
Repository: CRAN
Date/Publication: 2017-01-18 18:07:54

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Package thregI updated to version 1.0.2 with previous version 1.0.1 dated 2016-03-14

Title: Threshold Regression for Interval Censored Data with Cure-Rate or without Cure-Rate Model
Description: Fit a threshold regression model for Interval Censored Data based on the first-hitting-time of a boundary by the sample path of a Wiener diffusion process. The threshold regression methodology is well suited to applications involving survival and time-to-event data.
Author: Man-Hua Chen
Maintainer: Man-Hua Chen <mchen@mail.tku.edu.tw>

Diff between thregI versions 1.0.1 dated 2016-03-14 and 1.0.2 dated 2017-01-18

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Package RQGIS updated to version 0.2.0 with previous version 0.1.0 dated 2016-08-15

Title: Integrating R with QGIS
Description: Establishes an interface between R and 'QGIS', i.e. it allows the user to access 'QGIS' functionalities from the R console. It achieves this by using the 'QGIS' Python API via the command line. Hence, RQGIS extends R's statistical power by the incredible vast geo-functionality of 'QGIS' (including also 'GDAL', 'SAGA'- and 'GRASS'-GIS among other third-party providers). This in turn creates a powerful environment for advanced and innovative (geo-)statistical geocomputing. 'QGIS' is licensed under GPL version 2 or greater and is available from <http://www.qgis.org/en/site/>.
Author: Jannes Muenchow [aut, cre], Patrick Schratz [aut]
Maintainer: Jannes Muenchow <jannes.muenchow@uni-jena.de>

Diff between RQGIS versions 0.1.0 dated 2016-08-15 and 0.2.0 dated 2017-01-18

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More information about RQGIS at CRAN
Permanent link

Package RKEEL updated to version 1.1.18 with previous version 1.1.17 dated 2017-01-17

Title: Using Keel in R Code
Description: KEEL is a popular Java software for a large number of different knowledge data discovery tasks. This package takes the advantages of KEEL and R, allowing to use KEEL algorithms in simple R code. The implemented R code layer between R and KEEL makes easy both using KEEL algorithms in R as implementing new algorithms for 'RKEEL' in a very simple way. It includes more than 100 algorithms for classification, regression and preprocess, which allows a more complete experimentation process. For more information about KEEL, see <http://www.keel.es/>.
Author: Jose M. Moyano [aut, cre], Luciano Sanchez Ramos [aut], Oliver Sanchez Marin [ctb]
Maintainer: Jose M. Moyano <i02momuj@uco.es>

Diff between RKEEL versions 1.1.17 dated 2017-01-17 and 1.1.18 dated 2017-01-18

 DESCRIPTION |   10 +++++-----
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More information about RKEEL at CRAN
Permanent link

Package rgho updated to version 1.0.1 with previous version 1.0.0 dated 2016-11-08

Title: Access WHO Global Health Observatory Data from R
Description: Access WHO Global Health Observatory (<http://www.who.int/gho/>) data from R via the Athena web service (<http://apps.who.int/gho/data/node.resources.api>), an application program interface providing a simple query interface to the World Health Organization's data and statistics content.
Author: Antoine Filipovic-Pierucci [aut,cre]
Maintainer: Antoine Filipovic-Pierucci <pierucci@gmail.com>

Diff between rgho versions 1.0.0 dated 2016-11-08 and 1.0.1 dated 2017-01-18

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More information about rgho at CRAN
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Package rAmCharts updated to version 2.1.3 with previous version 2.1.2 dated 2016-12-20

Title: JavaScript Charts API Tool
Description: API for using 'AmCharts' Library. Based on 'htmlwidgets', it provides a global architecture to generate 'JavaScript' source code for charts. Most of classes in the library have their equivalent in R with S4 classes; for those classes, not all properties have been referenced but can easily be added in the constructors. Complex properties (e.g. 'JavaScript' object) can be passed as named list. See examples at <http:// datastorm- open.github.io/ introduction_ramcharts/>. and <http://www.amcharts.com/> for more information about the library. The package includes the free version of 'AmCharts' Library. Its only limitation is a small link to the web site displayed on your charts. If you enjoy this library, do not hesitate to refer to this page <http://www.amcharts.com/online-store/> to purchase a licence, and thus support its creators and get a period of Priority Support. See also <http:// www.amcharts.com/about/> for more information about 'AmCharts' company.
Author: Jeffery Petit [aut, cre], Antanas Marcelionis [aut, cph] ('AmCharts' library in th directory htmlwidgets/lib/amcharts, refer to http://www.amcharts.com/), Benoit Thieurmel [aut, ctb], Elena Salette [aut, ctb], Titouan Robert [aut, ctb]
Maintainer: Jeffery Petit <jeffery.petit@datastorm.fr>

Diff between rAmCharts versions 2.1.2 dated 2016-12-20 and 2.1.3 dated 2017-01-18

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Package precrec updated to version 0.6.2 with previous version 0.6.1 dated 2016-11-22

Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics) curves.
Author: Takaya Saito [aut, cre], Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>

Diff between precrec versions 0.6.1 dated 2016-11-22 and 0.6.2 dated 2017-01-18

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Package Power2Stage updated to version 0.4-5 with previous version 0.4-3 dated 2015-11-26

Title: Power and Sample-Size Distribution of 2-Stage Bioequivalence Studies
Description: Contains functions to obtain the operational characteristics of bioequivalence studies with 2-stage designs (TSD) via simulations.
Author: Detlew Labes [aut, cre], Helmut Schuetz [ctb]
Maintainer: Detlew Labes <DetlewLabes@gmx.de>

Diff between Power2Stage versions 0.4-3 dated 2015-11-26 and 0.4-5 dated 2017-01-18

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 Power2Stage-0.4-5/Power2Stage/MD5                          |   39 +--
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 Power2Stage-0.4-5/Power2Stage/R/power_2stage_parallel.R    |  154 ++++++++-----
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Package nopaco updated to version 0.99.7 with previous version 0.99.4 dated 2017-01-13

Title: Non-Parametric Concordance Coefficient: A Non-Parametric Concordance Test
Description: A non-parametric test for multi-observer concordance and differences between concordances in (un)balanced data.
Author: Rowan Kuiper [cre, aut], Remco Hoogenboezem [aut], Sjoerd Huisman [ctb], google-sparsehash@googlegroups.com [aut, cph] (Copyright by Google Inc. as mentioned in inst/COPYRIGHTS, applies to all the files in the src/densehash directory)
Maintainer: Rowan Kuiper <r.kuiper.emc@gmail.com>

Diff between nopaco versions 0.99.4 dated 2017-01-13 and 0.99.7 dated 2017-01-18

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 nopaco-0.99.7/nopaco/src/densehash                  |only
 nopaco-0.99.7/nopaco/src/exactdistribution202.cpp   |   11 +++-
 nopaco-0.99.7/nopaco/src/exactdistribution_base.cpp |    6 +-
 nopaco-0.99.7/nopaco/src/exactdistribution_base.h   |    6 +-
 nopaco-0.99.7/nopaco/src/getPsi.cpp                 |    3 -
 nopaco-0.99.7/nopaco/src/register.cpp               |    2 
 nopaco-0.99.7/nopaco/src/samplePsi.cpp              |    3 -
 14 files changed, 52 insertions(+), 52 deletions(-)

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Package HH updated to version 3.1-34 with previous version 3.1-32 dated 2016-06-22

Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.
Author: Richard M. Heiberger
Maintainer: Richard M. Heiberger <rmh@temple.edu>

Diff between HH versions 3.1-32 dated 2016-06-22 and 3.1-34 dated 2017-01-18

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 NAMESPACE                           |    6 -
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 R/normal.and.t.R                    |  152 +++++++++++++++++++++++-------------
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 R/regr2.plot.R                      |   51 ++----------
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 32 files changed, 513 insertions(+), 274 deletions(-)

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New package grattan with initial version 1.3.0.3
Package: grattan
Type: Package
Title: Perform Common Quantitative Tasks for Australian Analysts and to Support Grattan Institute Analysis
Version: 1.3.0.3
Date: 2016-01-18
Authors@R: c(person("Hugh", "Parsonage", role = c("aut", "cre"), email = "hugh.parsonage@gmail.com"), person("Tim", "Cameron", role = "aut"), person("Brendan", "Coates", role = "aut"), person("William", "Young", role = "aut"), person("Ittima", "Cherastidtham", role = "dtc"))
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
URL: https://github.com/HughParsonage/grattan
BugReports: https://github.com/HughParsonage/grattan/issues
Description: A series of functions focused on costing and evaluating Australian tax policy in support of the Grattan Institute's Australian Perspectives program. For access to the taxstats package, please run install.packages("taxstats", repos = "https://hughparsonage.github.io/drat/", type = "source"). N.B. The taxstats package is approximately 50 MB.
Depends: R (>= 2.10)
License: GPL-2
Imports: data.table, dplyr (>= 0.5.0), rsdmx, forecast, lubridate, assertthat, magrittr, Rcpp (>= 0.12.3), zoo, lazyeval, purrr
LinkingTo: Rcpp
RoxygenNote: 5.0.1
Suggests: testthat, taxstats, rmarkdown, dtplyr, ggplot2, scales, broom, knitr, survey, viridis, ggrepel
Additional_repositories: https://hughparsonage.github.io/drat/
LazyData: true
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2017-01-18 11:03:36 UTC; hughp
Author: Hugh Parsonage [aut, cre], Tim Cameron [aut], Brendan Coates [aut], William Young [aut], Ittima Cherastidtham [dtc]
Repository: CRAN
Date/Publication: 2017-01-18 18:07:36

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New package EnsCat with initial version 1.0
Package: EnsCat
Type: Package
Title: Clustering of Categorical Data
Version: 1.0
Date: 2017-1-17
Author: Saeid Amiri, Bertrand Clarke and Jennifer Clarke.
Maintainer: Saeid Amiri <saeid.amiri1@gmail.com>
Depends: stats, utils, graphics, dendextend, ggplot2, ggdendro, seqinr, R (>= 3.3.2)
Description: An implementation of the clustering methods of categorical data discussed in Amiri, S., Clarke, B., and Clarke, J. (2015). Clustering categorical data via ensembling dissimilarity matrices. Preprint arXiv:1506.07930 <https://arxiv.org/abs/1506.07930>.
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: no
Packaged: 2017-01-18 13:50:58 UTC; saeidamiri
Repository: CRAN
Date/Publication: 2017-01-18 18:07:09

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New package confSAM with initial version 0.1
Package: confSAM
Type: Package
Title: Estimates and Bounds for the False Discovery Proportion, by Permutation
Version: 0.1
Date: 2017-01-06
Author: Jesse Hemerik and Jelle Goeman
Maintainer: Jesse Hemerik <j.b.a.hemerik@lumc.nl>
Description: For multiple testing. Computes estimates and confidence bounds for the False Discovery Proportion (FDP), the fraction of false positives among all rejected hypotheses. The methods in the package use permutations of the data. Doing so, they take into account the dependence structure in the data.
License: GNU General Public License
LazyData: TRUE
VignetteBuilder: knitr
Suggests: penalized, survival, knitr
NeedsCompilation: no
Packaged: 2017-01-18 12:15:41 UTC; jbahemerik
Repository: CRAN
Date/Publication: 2017-01-18 18:07:35

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New package conditions with initial version 0.1
Package: conditions
Type: Package
Title: Standardized Conditions for R
Version: 0.1
Author: Michel Lang <michellang@gmail.com>
Maintainer: Michel Lang <michellang@gmail.com>
Description: Implements specialized conditions, i.e., typed errors, warnings and messages. Offers a set of standardized conditions (value error, deprecated warning, io message, ...) in the fashion of Python's built-in exceptions.
License: BSD_2_clause + file LICENSE
URL: https://github.com/mllg/conditions
BugReports: https://github.com/mllg/conditions/issues
NeedsCompilation: yes
ByteCompile: yes
Encoding: UTF-8
Depends: R (>= 3.0.0)
Suggests: testthat
RoxygenNote: 5.0.1
Packaged: 2017-01-18 12:39:10 UTC; lang
Repository: CRAN
Date/Publication: 2017-01-18 18:07:33

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Package compareDF updated to version 1.1.0 with previous version 1.0.0 dated 2016-03-07

Title: Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure
Description: Compares two dataframes which have the same column structure to show the rows that have changed. Also gives a git style diff format to quickly see what has changes in addition to summary statistics.
Author: Alex Joseph [aut, cre]
Maintainer: Alex Joseph <alexsanjoseph@gmail.com>

Diff between compareDF versions 1.0.0 dated 2016-03-07 and 1.1.0 dated 2017-01-18

 DESCRIPTION                         |   14 +++++++-------
 LICENSE                             |    2 +-
 MD5                                 |   10 +++++-----
 NEWS.md                             |    3 +++
 R/fnsComparison.R                   |   19 ++++++++++++++-----
 tests/testthat/test-fnsComparison.R |   20 +++++++++++++++++++-
 6 files changed, 49 insertions(+), 19 deletions(-)

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Package cba updated to version 0.2-18 with previous version 0.2-17 dated 2016-06-04

Title: Clustering for Business Analytics
Description: Implements clustering techniques such as Proximus and Rock, utility functions for efficient computation of cross distances and data manipulation.
Author: Christian Buchta and Michael Hahsler
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>

Diff between cba versions 0.2-17 dated 2016-06-04 and 0.2-18 dated 2017-01-18

 CHANGELOG          |    5 +++++
 DESCRIPTION        |    8 ++++----
 MD5                |   21 +++++++++++----------
 NAMESPACE          |   22 +---------------------
 R/ccfkms.r         |    2 +-
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Package betapart updated to version 1.4 with previous version 1.3 dated 2013-12-12

Title: Partitioning Beta Diversity into Turnover and Nestedness Components
Description: Functions to compute pair-wise dissimilarities (distance matrices) and multiple-site dissimilarities, separating the turnover and nestedness-resultant components of taxonomic (incidence and abundance based), functional and phylogenetic beta diversity.
Author: Andres Baselga, David Orme, Sebastien Villeger, Julien De Bortoli and Fabien Leprieur
Maintainer: Andres Baselga <andres.baselga@usc.es>

Diff between betapart versions 1.3 dated 2013-12-12 and 1.4 dated 2017-01-18

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Package backports updated to version 1.0.5 with previous version 1.0.4 dated 2016-10-24

Title: Reimplementations of Functions Introduced Since R-3.0.0
Description: Implementations of functions which have been introduced in R since version 3.0.0. The backports are conditionally exported which results in R resolving the function names to the version shipped with R (if available) and uses the implemented backports as fallback. This way package developers can make use of the new functions without worrying about the minimum required R version.
Author: Michel Lang <michellang@gmail.com>
Maintainer: Michel Lang <michellang@gmail.com>

Diff between backports versions 1.0.4 dated 2016-10-24 and 1.0.5 dated 2017-01-18

 DESCRIPTION            |    8 +++---
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 NAMESPACE              |    2 +
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 tests/helper/helper.R  |    1 
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 32 files changed, 228 insertions(+), 138 deletions(-)

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Package arulesSequences updated to version 0.2-17 with previous version 0.2-16 dated 2016-08-01

Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences. Provides interfaces to the C++ implementation of cSPADE by Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>

Diff between arulesSequences versions 0.2-16 dated 2016-08-01 and 0.2-17 dated 2017-01-18

 CHANGELOG   |    4 ++++
 DESCRIPTION |    8 ++++----
 MD5         |    7 ++++---
 NAMESPACE   |   16 +---------------
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 5 files changed, 13 insertions(+), 22 deletions(-)

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Package AdMit updated to version 2.1.2 with previous version 2.1.1 dated 2017-01-13

Title: Adaptive Mixture of Student-t Distributions
Description: Provides functions to perform the fitting of an adaptive mixture of Student-t distributions to a target density through its kernel function as described in Ardia et al. (2009) <doi:10.18637/jss.v029.i03>. The mixture approximation can then be used as the importance density in importance sampling or as the candidate density in the Metropolis-Hastings algorithm to obtain quantities of interest for the target density itself.
Author: David Ardia [aut, cre], Lennart Hoogerheide [ctb], Herman van Dijk [ctb]
Maintainer: David Ardia <david.ardia.ch@gmail.com>

Diff between AdMit versions 2.1.1 dated 2017-01-13 and 2.1.2 dated 2017-01-18

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 MD5                 |   14 +++++++-------
 NEWS                |    3 +++
 README.md           |    1 +
 build/partial.rdb   |binary
 inst/doc/AdMit.Rnw  |    2 +-
 inst/doc/AdMit.pdf  |binary
 vignettes/AdMit.Rnw |    2 +-
 8 files changed, 17 insertions(+), 13 deletions(-)

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Package yuima updated to version 1.4.7 with previous version 1.3.6 dated 2016-11-06

Title: The YUIMA Project Package for SDEs
Description: Simulation and Inference for Stochastic Differential Equations.
Author: YUIMA Project Team
Maintainer: Stefano M. Iacus <stefano.iacus@unimi.it>

Diff between yuima versions 1.3.6 dated 2016-11-06 and 1.4.7 dated 2017-01-18

 yuima-1.3.6/yuima/src/rpts.c                             |only
 yuima-1.4.7/yuima/DESCRIPTION                            |    6 
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 yuima-1.4.7/yuima/NAMESPACE                              |  482 ++++++-------
 yuima-1.4.7/yuima/NEWS                                   |    3 
 yuima-1.4.7/yuima/R/AuxMethodforPPR.R                    |   59 +
 yuima-1.4.7/yuima/R/DiagnosticCarma.R                    |    1 
 yuima-1.4.7/yuima/R/RcppExports.R                        |   62 +
 yuima-1.4.7/yuima/R/adaBayes.R                           |  515 ++++++++++++++
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 yuima-1.4.7/yuima/R/qmle.R                               |   14 
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 yuima-1.4.7/yuima/R/setMultiModel.R                      |   11 
 yuima-1.4.7/yuima/R/simulateForMapsIntegralAndOperator.R |   80 +-
 yuima-1.4.7/yuima/R/simulateForPpr.R                     |  543 ++++++++++++++-
 yuima-1.4.7/yuima/R/simulateMultiProcess.R               |   75 +-
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New package support.BWS2 with initial version 0.1-0
Package: support.BWS2
Type: Package
Title: Basic Functions for Supporting an Implementation of Case 2 Best-Worst Scaling
Version: 0.1-0
Date: 2017-01-18
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>
Description: Provides three basic functions that support an implementation of Case 2 (profile case) best-worst scaling. The first is to convert an orthogonal main-effect design into questions, the second is to create a dataset suitable for analysis, and the third is to calculate count-based scores.
License: GPL (>= 2)
Suggests: DoE.base, survival
NeedsCompilation: no
Packaged: 2017-01-18 06:21:35 UTC; user
Repository: CRAN
Date/Publication: 2017-01-18 08:37:45

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Package SemiParBIVProbit updated to version 3.8-1 with previous version 3.8 dated 2016-08-18

Title: Semiparametric Copula Regression Models
Description: Routines for fitting several classes of copula regression models, with several types of covariate effects, in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>

Diff between SemiParBIVProbit versions 3.8 dated 2016-08-18 and 3.8-1 dated 2017-01-18

 ChangeLog                          |    6 
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Permanent link

Package RcmdrPlugin.EZR updated to version 1.34 with previous version 1.33 dated 2016-08-29

Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>

Diff between RcmdrPlugin.EZR versions 1.33 dated 2016-08-29 and 1.34 dated 2017-01-18

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More information about RcmdrPlugin.EZR at CRAN
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New package metScanR with initial version 0.0.1
Package: metScanR
Title: Find, Map, and Gather Data from Meteorological Stations
Version: 0.0.1
Date: 2017-01-16
Authors@R: c(person("Josh", "Roberti", email = "jaroberti87@gmail.com", role = c("aut", "cre")), person("Cody", "Flagg", role = "aut"), person("Lee", "Stanish", role = "aut"), person("Sam", "Weintraub", role = "aut"), person("Derek", "Smith", role = "aut"))
Description: A tool for locating, mapping, and gathering meteorological data from various US surface networks: COOP, USCRN, USRCRN, AL-USRCRN, ASOS, AWOS, SNOTEL, SNOTEL-LITE, SCAN, SNOW, and NEON. The functions within this package allow the user to locate stations that are near a user specified latitude and longitude (or NEON site). Future updates to the package will allow the user to obtain datasets from these networks.
Depends: R (>= 3.3.1)
Imports: geosphere, RColorBrewer, plotly, leaflet, ggmap, rjson
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1.9000
URL: https://cflagg.github.io/metScanR/
NeedsCompilation: no
Packaged: 2017-01-17 21:00:41 UTC; jroberti
Author: Josh Roberti [aut, cre], Cody Flagg [aut], Lee Stanish [aut], Sam Weintraub [aut], Derek Smith [aut]
Maintainer: Josh Roberti <jaroberti87@gmail.com>
Repository: CRAN
Date/Publication: 2017-01-18 08:37:44

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New package MADPop with initial version 1.1
Package: MADPop
Type: Package
Title: MHC Allele-Based Differencing Between Populations
Version: 1.1
Date: 2017-01-15
Authors@R: c(person("Martin", "Lysy", role = c("cre", "aut"), email = "mlysy@uwaterloo.ca"), person("Peter W.J.", "Kim", role = "aut"), person("Terin", "Robinson", role = "ctb"))
Description: Tools for the analysis of population differences using the Major Histocompatibility Complex (MHC) genotypes of samples having a variable number of alleles (1-4) recorded for each individual. A hierarchical Dirichlet-Multinomial model on the genotype counts is used to pool small samples from multiple populations for pairwise tests of equality. Bayesian inference is implemented via the 'rstan' package. Bootstrapped and posterior p-values are provided for chi-squared and likelihood ratio tests of equal genotype probabilities.
Depends: R (>= 3.0.2), rstan (>= 2.14.1)
Imports: stats, utils, Rcpp (>= 0.12.9), methods (>= 3.3.2)
LinkingTo: StanHeaders (>= 2.14.0.1), rstan (>= 2.14.1), BH (>= 1.62.0.1), Rcpp (>= 0.12.9), RcppEigen (>= 0.3.2.9.0)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
License: GPL-3
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2017-01-18 06:22:06 UTC; mlysy
Author: Martin Lysy [cre, aut], Peter W.J. Kim [aut], Terin Robinson [ctb]
Maintainer: Martin Lysy <mlysy@uwaterloo.ca>
Repository: CRAN
Date/Publication: 2017-01-18 08:37:33

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Package getCRUCLdata updated to version 0.1.2 with previous version 0.1.1 dated 2017-01-05

Title: Download and Use CRU CL2.0 Climatology Data in R
Description: Provides functions that automate downloading and importing University of East Anglia Climate Research Unit (CRU) CL2.0 climatology data into R, facilitates the calculation of minimum temperature and maximum temperature and formats the data into a tidy data frame or a list of raster stack objects for use in an R session. CRU CL2.0 data are a gridded climatology of 1961-1990 monthly means released in 2002 and cover all land areas (excluding Antarctica) at 10-minute resolution. For more information see the description of the data provided by the University of East Anglia Climate Research Unit, <https://crudata.uea.ac.uk/cru/data/hrg/tmc/readme.txt>.
Author: Adam Sparks [aut, cre]
Maintainer: Adam Sparks <adamhsparks@gmail.com>

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Permanent link

New package caesar with initial version 0.1.0
Package: caesar
Type: Package
Title: Encrypts and Decrypts Strings
Version: 0.1.0
Authors@R: person("Jacob", "Kaplan", email = "jacobkap@sas.upenn.edu", role = c("aut", "cre"))
Description: Encrypts and decrypts strings using either the Caesar cipher or a pseudorandom number generation (using set.seed()) method.
Depends:
Imports: binhf
License: GPL
Encoding: UTF-8
LazyData: true
URL: https://github.com/jacobkap/caesar
BugReports: https://github.com/jacobkap/caesar/issues
RoxygenNote: 5.0.1.9000
NeedsCompilation: no
Packaged: 2017-01-17 21:18:57 UTC; user
Author: Jacob Kaplan [aut, cre]
Maintainer: Jacob Kaplan <jacobkap@sas.upenn.edu>
Repository: CRAN
Date/Publication: 2017-01-18 08:37:40

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Tue, 17 Jan 2017

Package h2o updated to version 3.10.2.2 with previous version 3.10.0.8 dated 2016-10-14

Title: R Interface for H2O
Description: R scripting functionality for H2O, the open source math engine for big data that computes parallel distributed machine learning algorithms such as generalized linear models, gradient boosting machines, random forests, and neural networks (deep learning) within various cluster environments.
Author: The H2O.ai team
Maintainer: Tom Kraljevic <tomk@0xdata.com>

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Package cleanr updated to version 1.1.3 with previous version 1.1.2 dated 2016-12-21

Title: Helps You to Code Cleaner
Description: Check your R code for some of the most common layout flaws. Many tried to teach us how to write code less dreadful, be it implicitly as B. W. Kernighan and D. M. Ritchie (1988) <ISBN:0-13-110362-8> in 'The C Programming Language' did, be it explicitly as R.C. Martin (2008) <ISBN:0-13-235088-2> in 'Clean Code: A Handbook of Agile Software Craftsmanship' did. So we should check our code for files too long or wide, functions with too many lines, too wide lines, too many arguments or too many levels of nesting. Note: This is not a static code analyzer like pylint or the like. Checkout https://github.com/jimhester/lintr instead.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <adc-r@arcor.de>

Diff between cleanr versions 1.1.2 dated 2016-12-21 and 1.1.3 dated 2017-01-17

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Package bootnet updated to version 0.4 with previous version 0.3 dated 2016-09-04

Title: Bootstrap Methods for Various Network Estimation Routines
Description: Bootstrap methods to assess accuracy and stability of estimated network structures and centrality indices. Allows for flexible specification of any undirected network estimation procedure in R, and offers default sets for 'qgraph', 'IsingFit', 'IsingSampler', 'glasso', 'huge' and 'parcor' packages.
Author: Sacha Epskamp and Eiko I. Fried
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>

Diff between bootnet versions 0.3 dated 2016-09-04 and 0.4 dated 2017-01-17

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New package WikidataQueryServiceR with initial version 0.1.0
Package: WikidataQueryServiceR
Title: API Client Library for 'Wikidata Query Service'
Version: 0.1.0
Date: 2017-01-17
Authors@R: c( person("Mikhail", "Popov", email = "mikhail@wikimedia.org", role = c("aut", "cre"), comment = "@bearloga on Twitter"), person("Wikimedia Foundation", role = "cph") )
Description: An API client for the 'Wikidata Query Service' <https://query.wikidata.org/>.
Depends: R (>= 3.1.2)
Imports: httr (>= 1.2.1), dplyr (>= 0.5.0), jsonlite (>= 1.2)
Suggests: rvest (>= 0.3.2), urltools (>= 1.6.0)
URL: https://github.com/bearloga/WikidataQueryServiceR
BugReports: https://github.com/bearloga/WikidataQueryServiceR/issues
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-01-17 20:24:47 UTC; mpopov
Author: Mikhail Popov [aut, cre] (@bearloga on Twitter), Wikimedia Foundation [cph]
Maintainer: Mikhail Popov <mikhail@wikimedia.org>
Repository: CRAN
Date/Publication: 2017-01-17 23:12:16

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Package rorutadis updated to version 0.4.2 with previous version 0.4.1 dated 2016-07-13

Title: Robust Ordinal Regression UTADIS
Description: Implementation of Robust Ordinal Regression for multiple criteria value-based sorting with preference information provided in form of possibly imprecise assignment examples, assignment-based pairwise comparisons, and desired class cardinalities [Kadzinski et al. 2015, <doi:10.1016/j.ejor.2014.09.050>].
Author: Krzysztof Ciomek
Maintainer: Krzysztof Ciomek <k.ciomek@gmail.com>

Diff between rorutadis versions 0.4.1 dated 2016-07-13 and 0.4.2 dated 2017-01-17

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 5 files changed, 41 insertions(+), 40 deletions(-)

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New package padr with initial version 0.1.0
Package: padr
Type: Package
Title: Quickly Get Datetime Data Ready for Analysis
Version: 0.1.0
Author: Edwin Thoen
Maintainer: Edwin Thoen <edwinthoen@gmail.com>
Description: Transforms datetime data into a format ready for analysis. It offers two functionalities; aggregating data to a higher level interval (thicken) and imputing records where observations were absent (pad). It also offers a few functions that assist with filling missing values after padding.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.0.0)
Imports: Rcpp
Suggests: lubridate, ggplot2, testthat, knitr, rmarkdown, lazyeval, dplyr, tidyr, data.table
RoxygenNote: 5.0.1
LinkingTo: Rcpp
VignetteBuilder: knitr
URL: https://github.com/EdwinTh/padr
BugReports: https://github.com/EdwinTh/padr/issues
NeedsCompilation: yes
Packaged: 2017-01-17 19:50:31 UTC; edwinthoen
Repository: CRAN
Date/Publication: 2017-01-17 22:36:46

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New package europop with initial version 0.3
Package: europop
Type: Package
Title: Historical Populations of European Cities, 1500-1800
Version: 0.3
Authors@R: c( person("Matthew", "Lincoln", email = "matthew.d.lincoln@gmail.com", role = c("aut", "cre")), person("Jan", "De Vries", role = "aut"))
Description: This dataset contains populations of all European cities with at least 10,000 inhabitants during the period 1500-1800. These data are adapted from Jan De Vries, "European Urbanization, 1500-1800" (1984).
License: CC0
LazyData: TRUE
Depends: R (>= 2.10)
Suggests: dplyr, tidyr, readr
RoxygenNote: 5.0.1
URL: https://github.com/mdlincoln/europop
BugReports: https://github.com/mdlincoln/europop/issues
NeedsCompilation: no
Packaged: 2017-01-17 18:36:36 UTC; MLincoln
Author: Matthew Lincoln [aut, cre], Jan De Vries [aut]
Maintainer: Matthew Lincoln <matthew.d.lincoln@gmail.com>
Repository: CRAN
Date/Publication: 2017-01-17 22:31:28

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New package WVPlots with initial version 0.2.0
Package: WVPlots
Type: Package
Title: Common Plots for Analysis
Version: 0.2.0
Date: 2017-01-15
Author: Nina Zumel, John Mount
Maintainer: John Mount <jmount@win-vector.com>
URL: https://github.com/WinVector/WVPlots
BugReports: https://github.com/WinVector/WVPlots/issues
Description: Example 'ggplot2' plots we have found useful, under a standardized calling interface.
License: GPL-3
Suggests: knitr, testthat, devtools, reshape2, plyr, graphics
VignetteBuilder: knitr
Depends: ggplot2, grid, gridExtra, mgcv, sigr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-01-17 14:55:18 UTC; johnmount
Repository: CRAN
Date/Publication: 2017-01-17 19:41:19

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Package vegan updated to version 2.4-2 with previous version 2.4-1 dated 2016-09-07

Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Michael Friendly, Roeland Kindt, Pierre Legendre, Dan McGlinn, Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs, Helene Wagner
Maintainer: Jari Oksanen <jari.oksanen@oulu.fi>

Diff between vegan versions 2.4-1 dated 2016-09-07 and 2.4-2 dated 2017-01-17

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Package RProtoBuf updated to version 0.4.8 with previous version 0.4.7 dated 2016-10-29

Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an efficient yet extensible format. Google uses Protocol Buffers for almost all of its internal 'RPC' protocols and file formats. Additional documentation is available in two included vignettes one of which corresponds to our paper in the Journal of Statistical Software (2016, v71i02). Either version 2 or 3 of the 'Protocol Buffers' 'API' is supported.
Author: Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RProtoBuf versions 0.4.7 dated 2016-10-29 and 0.4.8 dated 2017-01-17

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Package ngram updated to version 3.0.2 with previous version 3.0.1 dated 2016-07-13

Title: Fast n-Gram 'Tokenization'
Description: An n-gram is a sequence of n "words" taken, in order, from a body of text. This is a collection of utilities for creating, displaying, summarizing, and "babbling" n-grams. The 'tokenization' and "babbling" are handled by very efficient C code, which can even be built as its own standalone library. The babbler is a simple Markov chain. The package also offers a vignette with complete example 'workflows' and information about the utilities offered in the package.
Author: Drew Schmidt [aut, cre], Christian Heckendorf [aut]
Maintainer: Drew Schmidt <wrathematics@gmail.com>

Diff between ngram versions 3.0.1 dated 2016-07-13 and 3.0.2 dated 2017-01-17

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Package micropan updated to version 1.1.2 with previous version 1.1.1 dated 2017-01-09

Title: Microbial Pan-Genome Analysis
Description: A collection of functions for computations and visualizations of microbial pan-genomes.
Author: Lars Snipen and Kristian Hovde Liland
Maintainer: Lars Snipen <lars.snipen@nmbu.no>

Diff between micropan versions 1.1.1 dated 2017-01-09 and 1.1.2 dated 2017-01-17

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Package microclass updated to version 1.1 with previous version 1.0.1 dated 2016-09-08

Title: Methods for Taxonomic Classification of Prokaryotes
Description: Functions for assigning 16S sequence data to a taxonomic level in the tree-of-life for prokaryotes.
Author: Kristian Hovde Liland, Hilde Vinje, Lars Snipen
Maintainer: Lars Snipen <lars.snipen@nmbu.no>

Diff between microclass versions 1.0.1 dated 2016-09-08 and 1.1 dated 2017-01-17

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New package CONS with initial version 0.1.0
Package: CONS
Type: Package
Version: 0.1.0
Date: 2017-01-16
Title: Consonance Analysis Module
Author: Nery Sofia Huerta-Pacheco, Victor Manuel Aguirre-Torres, Teresa Lopez-Alvarez
Maintainer: Nery Sofia Huerta-Pacheco <nehuerta@uv.mx>
Depends: R(>= 3.0.0), tcltk, gWidgets
Description: Consonance Analysis is a useful numerical and graphical approach for evaluating the consistency of the measurements and the panel of people involved in sensory evaluation. It makes use of several uni and multivariate techniques either graphical or analytical.
Imports: readxl, pander, raster, REdaS, FactoMineR
SystemRequirements: Tcl/Tk package
License: GPL (>= 2)
URL: http://www.uv.mx/personal/nehuerta/cons/
NeedsCompilation: no
Encoding: UTF-8
RoxygenNote: 5.0.1
Packaged: 2017-01-17 12:48:08 UTC; sofiahuerta
Repository: CRAN
Date/Publication: 2017-01-17 19:41:14

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Package BIOdry updated to version 0.4 with previous version 0.3 dated 2016-02-10

Title: Multilevel Modeling of Dendroclimatical Fluctuations
Description: Multilevel ecological data series (MEDS) are sequences of observations ordered according to temporal/spatial hierarchies that are defined by sample designs, with sample variability confined to ecological factors. Dendroclimatic MEDS of tree rings and climate are modeled into normalized fluctuations of tree growth and aridity. Modeled fluctuations (model frames) are compared with Mantel correlograms on multiple levels defined by sample design. Package implementation can be understood by running examples in modelFrame(), and muleMan() functions.
Author: Wilson Lara <wilarhen@gmail.com>, Felipe Bravo <fbravo@pvs.uva.es>
Maintainer: Wilson Lara <wilarhen@gmail.com>

Diff between BIOdry versions 0.3 dated 2016-02-10 and 0.4 dated 2017-01-17

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New package rCAT with initial version 0.1.5
Package: rCAT
Title: Conservation Assessment Tools
Version: 0.1.5
Date: 2017-01-11
Authors@R: c(person("Justin", "Moat", email = "J.Moat@kew.org", role = c("aut", "cre")),person("Steven", "Bachman",email="S.Bachman@kew.org", rol= c("ctb")))
Description: A set of tools to help with species conservation assessments (Red List threat assessments). Includes tool for Extent of occurrence, Area of Occupancy, Minimum Enclosing Rectangle, a geographic Projection Wizard and Species batch processing.
Depends: R (>= 3.3.0)
Suggests: rgeos, rgbif (>= 0.9.2), downscale (>= 1.2-4), knitr, rmarkdown, R.rsp
License: GPL-2
Imports: pracma (>= 1.9.5), rgdal (>= 1.2-5), sp (>= 1.2-3), grDevices (>= 3.3.2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
VignetteBuilder: R.rsp
NeedsCompilation: no
Packaged: 2017-01-17 17:47:29 UTC; Laptop
Author: Justin Moat [aut, cre], Steven Bachman [ctb]
Maintainer: Justin Moat <J.Moat@kew.org>
Repository: CRAN
Date/Publication: 2017-01-17 19:09:02

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Package mangoTraining updated to version 1.0-7 with previous version 1.0-6 dated 2015-12-18

Title: Mango Solutions Training Datasets
Description: Datasets designed to be used in conjunction with Mango Solutions training materials and the book SAMS Teach Yourself R in 24 Hours (ISBN: 978-0-672-33848-9).
Author: Mango Solutions <rin24hours@mango-solutions.com>
Maintainer: Aimee Gott <agott@mango-solutions.com>

Diff between mangoTraining versions 1.0-6 dated 2015-12-18 and 1.0-7 dated 2017-01-17

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Package lmSupport updated to version 2.9.8 with previous version 2.9.4 dated 2016-04-20

Title: Support for Linear Models
Description: Provides tools and a consistent interface to support analyses using General, Generalized, and Multi-level Linear Models.
Author: John Curtin <jjcurtin@wisc.edu>
Maintainer: John Curtin <jjcurtin@wisc.edu>

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Package imfr updated to version 0.1.3 with previous version 0.1.2 dated 2016-12-22

Title: Download Data from the International Monetary Fund's Data API
Description: Explore and download data from the International Monetary Fund's data API <http://data.imf.org/>.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>

Diff between imfr versions 0.1.2 dated 2016-12-22 and 0.1.3 dated 2017-01-17

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Package dynBiplotGUI updated to version 1.1.4 with previous version 1.1.3 dated 2015-04-27

Title: Full Interactive GUI for Dynamic Biplot in R
Description: A GUI to solve dynamic biplots and classical biplot. Try matrices of 2-way and 3-way. The GUI can be run in multiple languages.
Author: Jaime Egido [aut, cre]
Maintainer: Jaime Egido <jegido@usal.es>

Diff between dynBiplotGUI versions 1.1.3 dated 2015-04-27 and 1.1.4 dated 2017-01-17

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New package BayesS5 with initial version 1.22
Package: BayesS5
Type: Package
Title: Bayesian Variable Selection Using Simplified Shotgun Stochastic Search with Screening (S5)
Version: 1.22
Date: 2017-01-10
Author: Minsuk Shin and Ruoxuan Tian
Maintainer: Minsuk Shin <minsuk000@gmail.com>
Depends: R (>= 3.2.4)
Imports: Matrix, stats, snowfall, abind
Description: In p >> n settings, full posterior sampling using existing Markov chain Monte Carlo (MCMC) algorithms is highly inefficient and often not feasible from a practical perspective. To overcome this problem, we propose a scalable stochastic search algorithm that is called the Simplified Shotgun Stochastic Search (S5) and aimed at rapidly explore interesting regions of model space and finding the maximum a posteriori(MAP) model. Also, the S5 provides an approximation of posterior probability of each model (including the marginal inclusion probabilities).
URL: http://www.stat.tamu.edu/~minsuk/publications/nonlocal_sinica7.pdf
License: GPL (>= 2)
Repository: CRAN
NeedsCompilation: no
Packaged: 2017-01-17 16:04:55 UTC; minsuk
Date/Publication: 2017-01-17 19:07:36

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New package sys with initial version 1.0
Package: sys
Type: Package
Title: Portable System Utilities
Version: 1.0
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Description: Powerful replacements for base system2 with consistent behavior across platforms. Supports interruption, background tasks, and full control over STDOUT / STDERR binary or text streams.
License: MIT + file LICENSE
URL: https://github.com/jeroenooms/sys#readme
BugReports: https://github.com/jeroenooms/sys/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1.9000
Suggests: testthat
NeedsCompilation: yes
Packaged: 2017-01-17 10:46:03 UTC; jeroen
Repository: CRAN
Date/Publication: 2017-01-17 13:28:24

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Package RKEEL updated to version 1.1.17 with previous version 1.1.15 dated 2017-01-11

Title: Using Keel in R Code
Description: KEEL is a popular Java software for a large number of different knowledge data discovery tasks. This package takes the advantages of KEEL and R, allowing to use KEEL algorithms in simple R code. The implemented R code layer between R and KEEL makes easy both using KEEL algorithms in R as implementing new algorithms for 'RKEEL' in a very simple way. It includes more than 100 algorithms for classification, regression and preprocess, which allows a more complete experimentation process. For more information about KEEL, see <http://www.keel.es/>.
Author: Jose M. Moyano [aut, cre], Luciano Sanchez Ramos [aut], Oliver Sanchez Marin [ctb]
Maintainer: Jose M. Moyano <i02momuj@uco.es>

Diff between RKEEL versions 1.1.15 dated 2017-01-11 and 1.1.17 dated 2017-01-17

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Package berryFunctions updated to version 1.14.0 with previous version 1.13.0 dated 2016-12-10

Title: Function Collection Related to Plotting and Hydrology
Description: Draw horizontal histograms, color scattered points by 3rd dimension, enhance date- and log-axis plots, zoom in X11 graphics, trace errors and warnings, use the unit hydrograph in a linear storage cascade, convert lists to data.frames and arrays, fit multiple functions.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>

Diff between berryFunctions versions 1.13.0 dated 2016-12-10 and 1.14.0 dated 2017-01-17

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Package tseries updated to version 0.10-37 with previous version 0.10-36 dated 2016-12-15

Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut], Kurt Hornik [aut, cre], Blake LeBaron [ctb] (BDS test code)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

Diff between tseries versions 0.10-36 dated 2016-12-15 and 0.10-37 dated 2017-01-17

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Package date updated to version 1.2-36 with previous version 1.2-35 dated 2016-12-08

Title: Functions for Handling Dates
Description: Functions for handling dates.
Author: Terry Therneau [aut], Thomas Lumley [trl] (R port), Kjetil Halvorsen [trl] (R port), Kurt Hornik [trl, ctb, cre] (R port)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package chron updated to version 2.3-49 with previous version 2.3-48 dated 2016-12-08

Title: Chronological Objects which can Handle Dates and Times
Description: Provides chronological objects which can handle dates and times.
Author: David James [aut] (S original), Kurt Hornik [aut, trl, cre], Gabor Grothendieck [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package cclust updated to version 0.6-21 with previous version 0.6-20 dated 2015-06-24

Title: Convex Clustering Methods and Clustering Indexes
Description: Convex Clustering methods, including K-means algorithm, On-line Update algorithm (Hard Competitive Learning) and Neural Gas algorithm (Soft Competitive Learning), and calculation of several indexes for finding the number of clusters in a data set.
Author: Evgenia Dimitriadou [aut], Kurt Hornik [ctb, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package tabplot updated to version 1.3-1 with previous version 1.3 dated 2016-03-26

Title: Tableplot, a Visualization of Large Datasets
Description: A tableplot is a visualisation of a (large) dataset with a dozen of variables, both numeric and categorical. Each column represents a variable and each row bin is an aggregate of a certain number of records. Numeric variables are visualized as bar charts, and categorical variables as stacked bar charts. Missing values are taken into account. Also supports large 'ffdf' datasets from the 'ff' package.
Author: Martijn Tennekes and Edwin de Jonge
Maintainer: Martijn Tennekes <mtennekes@gmail.com>

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Package rstanarm updated to version 2.14.1 with previous version 2.13.1 dated 2016-11-20

Title: Bayesian Applied Regression Modeling via Stan
Description: Estimates pre-compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. Users specify models via the customary R syntax with a formula and data.frame plus some additional arguments for priors.
Author: Jonah Gabry [aut], Trustees of Columbia University [cph], R Core Deveopment Team [cph] (R/stan_aov.R), Douglas Bates [cph] (R/pp_data.R), Martin Maechler [cph] (R/pp_data.R), Ben Bolker [cph] (R/pp_data.R), Steve Walker [cph] (R/pp_data.R), Brian Ripley [cph] (R/stan_aov.R, R/stan_polr.R), William Venables [cph] (R/stan_polr.R), Ben Goodrich [cre, aut]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

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Package OpenMx updated to version 2.7.4 with previous version 2.7.3 dated 2017-01-14

Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications as things that can be generated and manipulated programmatically. Structural equation models may be specified with reticular action model matrices or paths, linear structural relations matrices or paths, or directly in matrix algebra. Fit functions include full information maximum likelihood, maximum likelihood, and weighted least squares. Example models include confirmatory factor, multiple group, mixture distribution, categorical threshold, modern test theory, differential equations, state space, and many others.
Author: Steven M. Boker [aut], Michael C. Neale [aut], Hermine H. Maes [aut], Michael J. Wilde [ctb], Michael Spiegel [aut], Timothy R. Brick [aut], Ryne Estabrook [aut], Timothy C. Bates [aut], Paras Mehta [ctb], Timo von Oertzen [ctb], Ross J. Gore [aut], Michael D. Hunter [aut], Daniel C. Hackett [ctb], Julian Karch [ctb], Andreas M. Brandmaier [ctb], Joshua N. Pritikin [aut, cre], Mahsa Zahery [aut], Robert M. Kirkpatrick [aut], Yang Wang [ctb], Charles Driver [ctb], Massachusetts Institute of Technology [cph], S. G. Johnson [cph], Association for Computing Machinery [cph], Dieter Kraft [cph], Stefan Wilhelm [cph], Manjunath B G [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>

Diff between OpenMx versions 2.7.3 dated 2017-01-14 and 2.7.4 dated 2017-01-17

 DESCRIPTION                                                               |    8 
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 R/MxDataWLS.R                                                             |    7 
 R/MxExpectationRAM.R                                                      |   12 
 R/MxFitFunctionWLS.R                                                      |    2 
 R/MxRunHelperFunctions.R                                                  |   58 +++
 R/MxSaturatedModel.R                                                      |   67 +---
 R/MxVersion.R                                                             |    2 
 inst/CITATION                                                             |    2 
 inst/models/enormous/rampart.R                                            |   15 
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 man/mxDataWLS.Rd                                                          |   10 
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 src/nanotimer_macosx.h                                                    |    2 
 src/nanotimer_rtposix.h                                                   |    2 
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 src/omxDefines.h                                                          |   14 
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Package normalr updated to version 0.0.3 with previous version 0.0.2 dated 2017-01-09

Title: Normalisation of Multiple Variables in Large-Scale Datasets
Description: The robustness of many of the statistical techniques, such as factor analysis, applied in the social sciences rests upon the assumption of item-level normality. However, when dealing with real data, these assumptions are often not met. The Box-Cox transformation (Box & Cox, 1964) <http://www.jstor.org/stable/2984418> provides an optimal transformation for non-normal variables. Yet, for large datasets of continuous variables, its application in current software programs is cumbersome with analysts having to take several steps to normalise each variable. We present an R package 'normalr' that enables researchers to make convenient optimal transformations of multiple variables in datasets. This R package enables users to quickly and accurately: (1) anchor all of their variables at 1.00, (2) select the desired precision with which the optimal lambda is estimated, (3) apply each unique exponent to its variable, (4) rescale resultant values to within their original X1 and X(n) ranges, and (5) provide original and transformed estimates of skewness, kurtosis, and other inferential assessments of normality.
Author: Kevin Chang [aut, cre], Matthew Courtney [aut]
Maintainer: Kevin Chang <k.chang@auckland.ac.nz>

Diff between normalr versions 0.0.2 dated 2017-01-09 and 0.0.3 dated 2017-01-17

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Package icamix updated to version 1.0.5 with previous version 1.0.4 dated 2015-10-22

Title: Estimation of ICA Mixture Models
Description: The icamix package provides R functions as well as a C++ library which facilitate the estimation of ICA mixture models. We have developed and implemented the NSMM-ICA algorithm that currently integrates npEM and Fast-ICA for non-parametric estimation of ICA mixture models. We will continue to build in algorithms that interweave the EM step with other types of ICA techniques.
Author: Xiaotian Zhu, David R. Hunter
Maintainer: Xiaotian Zhu <xzhu@natera.com>

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Package highcharter updated to version 0.5.0 with previous version 0.4.0 dated 2016-07-14

Title: A Wrapper for the 'Highcharts' Library
Description: A wrapper for the 'Highcharts' library including shortcut functions to plot R objects. 'Highcharts' <http://www.highcharts.com/> is a charting library offering numerous chart types with a simple configuration syntax.
Author: Joshua Kunst [aut, cre], Nuno Agostinho [ctb] (hchart.survfit, densities and hc_add_series_scatter), Eduardo Flores [ctb] (First version hc_add_series_df_tidy), Dean Kilfoyle [ctb] (First version hc_add_series_boxplot), Adline Dsilva [ctb] (First version Matrix heatmap)
Maintainer: Joshua Kunst <jbkunst@gmail.com>

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Package clusrank updated to version 0.5-2 with previous version 0.5-1 dated 2017-01-01

Title: Wilcoxon Rank Sum Test for Clustered Data
Description: Non-parametric tests (Wilcoxon rank sum test and Wilcoxon signed rank test) for clustered data.
Author: Yujing Jiang [aut, cre], Mei-Ling Ting Lee [ctb], Jun Yan [ctb]
Maintainer: Yujing Jiang <yujing.jiang@uconn.edu>

Diff between clusrank versions 0.5-1 dated 2017-01-01 and 0.5-2 dated 2017-01-17

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Package bayesianETAS updated to version 1.0.3 with previous version 1.0 dated 2016-12-14

Title: Bayesian Estimation of the ETAS Model for Earthquake Occurrences
Description: The Epidemic Type Aftershock Sequence (ETAS) model is one of the best-performing methods for modeling and forecasting earthquake occurrences. This package implements Bayesian estimation routines to draw samples from the full posterior distribution of the model parameters, given an earthquake catalog. The paper on which this package is based is Gordon J. Ross - Bayesian Estimation of the ETAS Model for Earthquake Occurrences (2016), available from the below URL.
Author: Gordon J. Ross
Maintainer: Gordon J. Ross <gordon@gordonjross.co.uk>

Diff between bayesianETAS versions 1.0 dated 2016-12-14 and 1.0.3 dated 2017-01-17

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Mon, 16 Jan 2017

New package TLMoments with initial version 0.6.3
Package: TLMoments
Type: Package
Title: Calculate TL-Moments and Convert Them to Distribution Parameters
Version: 0.6.3
Date: 2017-01-16
Author: Jona Lilienthal
Maintainer: Jona Lilienthal <lilienthal@statistik.tu-dortmund.de>
Description: Calculates empirical TL-moments (trimmed L-moments) of arbitrary order and trimming, and converts them to distribution parameters.
License: GPL (>= 2)
Depends: Rcpp (>= 0.12.1), evd
Imports: hypergeo, stats
Suggests: magrittr, knitr, lmomco, Lmoments, lmom, microbenchmark
VignetteBuilder: knitr
LinkingTo: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2017-01-16 10:35:37 UTC; lilienthal
Repository: CRAN
Date/Publication: 2017-01-17 00:17:19

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Package selectiveInference updated to version 1.2.2 with previous version 1.2.0 dated 2016-06-13

Title: Tools for Post-Selection Inference
Description: New tools for post-selection inference, for use with forward stepwise regression, least angle regression, the lasso, and the many means problem. The lasso function implements Gaussian, logistic and Cox survival models.
Author: Ryan Tibshirani, Rob Tibshirani, Jonathan Taylor, Joshua Loftus, Stephen Reid
Maintainer: Rob Tibshirani <tibs@stanford.edu>

Diff between selectiveInference versions 1.2.0 dated 2016-06-13 and 1.2.2 dated 2017-01-16

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Package Peptides updated to version 1.1.2 with previous version 1.1.1 dated 2015-11-27

Title: Calculate Indices and Theoretical Properties of Protein Sequences
Description: Calculate physicochemical properties and indices from amino-acid sequences of peptides and proteins. Include also the option to read and plot output files from the 'GROMACS' molecular dynamics package.
Author: Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Maintainer: Daniel Osorio <daniel.osorio@correo.uis.edu.co>

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New package multinet with initial version 1.0
Package: multinet
Type: Package
Title: Analysis and Mining of Multilayer Social Networks
Version: 1.0
Date: 2017-01-15
Author: Matteo Magnani
Maintainer: Matteo Magnani <matteo.magnani@it.uu.se>
Description: Functions for the creation/generation and analysis of multilayer social networks.
License: GPL
Depends: igraph (>= 0.7.0), Rcpp (>= 0.11.1), methods
LinkingTo: Rcpp
RcppModules: multinet
SystemRequirements: A C++11 compiler.
NeedsCompilation: yes
Packaged: 2017-01-15 22:39:03 UTC; matteomagnani
Repository: CRAN
Date/Publication: 2017-01-17 01:07:57

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Package limSolve updated to version 1.5.5.2 with previous version 1.5.5.1 dated 2014-11-03

Title: Solving Linear Inverse Models
Description: Functions that (1) find the minimum/maximum of a linear or quadratic function: min or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(a_i*x_i) subject to equality constraints Ex=f and/or inequality constraints Gx>=h, (2) sample an underdetermined- or overdetermined system Ex=f subject to Gx>=h, and if applicable Ax~=b, (3) solve a linear system Ax=B for the unknown x. It includes banded and tridiagonal linear systems. The package calls Fortran functions from 'LINPACK'.
Author: Karline Soetaert [aut, cre], Karel Van den Meersche [aut], Dick van Oevelen [aut], LAPACK authors [cph]
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>

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Package lgtdl updated to version 1.1.4 with previous version 1.1.3 dated 2014-08-10

Title: A Set of Methods for Longitudinal Data Objects
Description: A very simple implementation of a class for longitudinal data.
Author: R. Gentleman
Maintainer: Arthur Allignol <arthur.allignol@uni-ulm.de>

Diff between lgtdl versions 1.1.3 dated 2014-08-10 and 1.1.4 dated 2017-01-16

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Package lawstat updated to version 3.1 with previous version 3.0 dated 2015-07-07

Title: Tools for Biostatistics, Public Policy, and Law
Description: Statistical tests widely utilized in biostatistics, public policy, and law. Along with the well-known tests for equality of means and variances, randomness, measures of relative variability etc, the package contains new robust tests of symmetry, omnibus and directional tests of normality, and their graphical counterparts such as Robust QQ plot; a robust trend tests for variances etc. All implemented tests and methods are illustrated by simulations and real-life examples from legal statistics, economics, and biostatistics.
Author: Joseph L. Gastwirth [aut], Yulia R. Gel [aut], W. L. Wallace Hui [aut], Vyacheslav Lyubchich [aut, cre], Weiwen Miao [aut], Kimihiro Noguchi [aut]
Maintainer: Vyacheslav Lyubchich <lyubchic@umces.edu>

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Package KODAMA updated to version 1.4 with previous version 1.3 dated 2016-12-19

Title: Knowledge Discovery by Accuracy Maximization
Description: An unsupervised and semi-supervised learning algorithm that performs feature extraction from noisy and high-dimensional data.
Author: Stefano Cacciatore, Leonardo Tenori, Claudio Luchinat, Phillip R. Bennett, and David A. MacIntyre
Maintainer: Stefano Cacciatore <tkcaccia@gmail.com>

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 DESCRIPTION          |   10 
 MD5                  |   22 -
 R/KOD.R              |  226 ++++++++----
 R/RcppExports.R      |  129 +++----
 data/MetRef.RData    |binary
 data/USA.RData       |binary
 data/lymphoma.RData  |binary
 inst/doc/KODAMA.Rmd  |    2 
 inst/doc/KODAMA.pdf  |  925 ++++++++++++++++++++++++++-------------------------
 man/knn.double.cv.Rd |   11 
 man/pls.double.cv.Rd |   10 
 vignettes/KODAMA.Rmd |    2 
 12 files changed, 731 insertions(+), 606 deletions(-)

More information about KODAMA at CRAN
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