Title: Ace Editor Bindings for Shiny
Description: Ace editor bindings to enable a rich text editing environment
within Shiny.
Author: Vincent Nijs [aut, cre],
Forest Fang [aut],
Trestle Technology, LLC [aut],
Jeff Allen [aut],
Institut de Radioprotection et de Surete Nucleaire [cph],
Ajax.org B.V. [ctb, cph]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between shinyAce versions 0.4.3 dated 2024-10-18 and 0.4.4 dated 2025-02-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ inst/www/ace/mode-handlebars.js | 9 ++++++++- inst/www/ace/snippets/handlebars.js | 9 ++++++++- 5 files changed, 29 insertions(+), 10 deletions(-)
Title: Probability Theory for Selecting Candidates in Plant Breeding
Description: Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.
Author: Saulo Chaves [aut, cre] ,
Kaio Dias [aut, cph] ,
Matheus Krause [aut]
Maintainer: Saulo Chaves <saulo.chaves@ufv.br>
Diff between ProbBreed versions 1.0.4.4 dated 2024-11-10 and 1.0.4.5 dated 2025-02-02
DESCRIPTION | 6 MD5 | 8 R/extr_outs.R | 864 +++++++++++++++++++++++++++---------------------------- R/prob_sup.R | 144 +++++---- src/Makevars.win | 1 5 files changed, 523 insertions(+), 500 deletions(-)
Title: Extensible, Parallelizable Implementation of the Random Forest
Algorithm
Description: Scalable implementation of classification and regression forests, as described by Breiman (2001), <DOI:10.1023/A:1010933404324>.
Author: Mark Seligman [aut, cre]
Maintainer: Mark Seligman <mseligman@suiji.org>
Diff between Rborist versions 0.3-7 dated 2024-01-15 and 0.3-11 dated 2025-02-02
DESCRIPTION | 14 +- MD5 | 185 ++++++++++++++++++----------------- NAMESPACE | 1 R/Export.R | 2 R/Streamline.R | 2 R/deframe.R | 20 ++- R/expandfe.R | 2 R/forestWeight.R | 2 R/getQuantiles.R | 6 - R/predict.arbTrain.R | 27 ++--- R/predict.rfArb.R |only R/preformat.R | 5 R/presample.R | 14 +- R/rfArb.R | 100 ++++++++++++------- R/rfTrain.R | 31 +++--- R/validate.R | 43 ++++++-- build/vignette.rds |binary inst/doc/rborist.R | 128 ++++++++++++------------ inst/doc/rborist.html | 78 ++++++++------- man/predict.arbTrain.Rd | 2 man/predict.rfArb.Rd |only man/preformat.Rd | 2 man/presample.Rd | 9 + man/rfArb.Rd | 23 ++-- man/rfTrain.Rd | 10 - man/validate.Rd | 8 - src/accum.h | 14 +- src/cand.cc | 6 - src/coreR.cc |only src/coreR.h |only src/corebridge.cc |only src/corebridge.h |only src/cutaccum.cc | 60 +++++++---- src/cutaccum.h | 159 +++++++++++++++++++++--------- src/cutaccumcart.cc | 87 ++++------------ src/cutaccumcart.h | 38 ++----- src/deframe.cc | 14 +- src/fecore.cc |only src/fecore.h |only src/fepredict.cc | 9 - src/fepredict.h | 3 src/fetrain.cc | 9 - src/fetrain.h | 7 - src/forest.cc | 2 src/forestR.cc | 18 +-- src/forestR.h | 2 src/forestWeightR.cc | 7 - src/frontier.cc | 4 src/interlevel.cc | 4 src/leaf.cc | 2 src/leafR.cc | 22 ++-- src/leafR.h | 2 src/nodescorer.cc | 2 src/ompthread.cc | 2 src/ompthread.h | 22 +++- src/path.h | 1 src/predict.cc | 6 - src/predictR.cc | 2 src/predictRRf.cc | 6 - src/predictbridge.cc | 5 src/predictbridge.h | 3 src/prediction.cc | 6 - src/predictorframe.cc | 2 src/predictorframe.h | 2 src/prng.h | 36 ------ src/prngR.cc | 52 ++++------ src/rcppInit.cc | 2 src/rcppInit.h | 2 src/rlecresc.cc | 6 - src/rlecresc.h | 1 src/rleframe.h | 8 - src/rleframeR.cc | 60 ----------- src/rleframeR.h | 5 src/runaccum.cc | 20 ++- src/runaccum.h | 2 src/runfrontier.cc | 2 src/sample.h | 217 ++++++++++++++++++++++++------------------ src/sampledobs.cc | 2 src/sampler.cc | 103 ++++++++++--------- src/sampler.h | 26 ++++- src/samplerR.cc | 8 - src/samplerR.h | 4 src/samplerbridge.cc | 3 src/samplerbridge.h | 1 src/sfcart.cc | 38 ------- src/signatureR.cc | 190 ++++++++++++++++++------------------ src/signatureR.h | 50 +++++++-- src/splitfrontier.cc | 55 +++++++--- src/splitfrontier.h | 77 +++++++++----- src/trainR.cc | 54 +++++----- src/trainR.h | 17 ++- src/trainRRf.cc | 13 +- src/trainRRf.h | 2 src/trainbridge.cc | 11 -- src/trainbridge.h | 15 -- src/typeparam.h | 1 tests/testthat/test-presort.R |only tests/testthat/test-regNum.R | 8 - 98 files changed, 1227 insertions(+), 1106 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use
in photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse ratios and
other derived quantities from spectral data. Local maxima and minima: peaks,
valleys and spikes. Conversion between energy-and photon-based units.
Wavelength interpolation. Astronomical calculations related solar angles and
day length. Colours and vision. This package is part of the 'r4photobiology'
suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb],
Agnese Fazio [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.11.4 dated 2024-11-30 and 0.12.0 dated 2025-02-02
photobiology-0.11.4/photobiology/R/relative-am.r |only photobiology-0.11.4/photobiology/R/spct.operators.r |only photobiology-0.11.4/photobiology/R/sun.calc.r |only photobiology-0.11.4/photobiology/R/water.et.r |only photobiology-0.11.4/photobiology/R/water.vapour.R |only photobiology-0.11.4/photobiology/data/ccd.spct.rda |only photobiology-0.11.4/photobiology/data/photodiode.spct.rda |only photobiology-0.11.4/photobiology/inst/doc/userguide-2-astronomy.R |only photobiology-0.11.4/photobiology/inst/doc/userguide-2-astronomy.Rmd |only photobiology-0.11.4/photobiology/inst/doc/userguide-2-astronomy.html |only photobiology-0.11.4/photobiology/man/ET_ref.Rd |only photobiology-0.11.4/photobiology/man/as.solar_date.Rd |only photobiology-0.11.4/photobiology/man/as_tod.Rd |only photobiology-0.11.4/photobiology/man/day_night.Rd |only photobiology-0.11.4/photobiology/man/format.solar_time.Rd |only photobiology-0.11.4/photobiology/man/format.tod_time.Rd |only photobiology-0.11.4/photobiology/man/irrad_extraterrestrial.Rd |only photobiology-0.11.4/photobiology/man/is.solar_time.Rd |only photobiology-0.11.4/photobiology/man/net_irradiance.Rd |only photobiology-0.11.4/photobiology/man/print.solar_time.Rd |only photobiology-0.11.4/photobiology/man/print.tod_time.Rd |only photobiology-0.11.4/photobiology/man/relative_AM.Rd |only photobiology-0.11.4/photobiology/man/solar_time.Rd |only photobiology-0.11.4/photobiology/man/sun_angles.Rd |only photobiology-0.11.4/photobiology/man/twilight2angle.Rd |only photobiology-0.11.4/photobiology/man/tz_time_diff.Rd |only photobiology-0.11.4/photobiology/man/validate_geocode.Rd |only photobiology-0.11.4/photobiology/man/water_vp_sat.Rd |only photobiology-0.11.4/photobiology/vignettes/userguide-2-astronomy.Rmd |only photobiology-0.12.0/photobiology/DESCRIPTION | 10 photobiology-0.12.0/photobiology/MD5 | 160 - photobiology-0.12.0/photobiology/NAMESPACE | 45 photobiology-0.12.0/photobiology/NEWS.md | 39 photobiology-0.12.0/photobiology/R/options-set-unset.R |only photobiology-0.12.0/photobiology/R/photobiology.r | 1 photobiology-0.12.0/photobiology/R/response.data.r | 28 photobiology-0.12.0/photobiology/R/spct-conversion-qty-unit.R |only photobiology-0.12.0/photobiology/R/spct-math.r |only photobiology-0.12.0/photobiology/R/spct.classes.r | 756 +++--- photobiology-0.12.0/photobiology/R/spct.normalize.r | 873 +++---- photobiology-0.12.0/photobiology/R/spct.summaries.r | 54 photobiology-0.12.0/photobiology/R/waveband.class.r | 58 photobiology-0.12.0/photobiology/README.md | 21 photobiology-0.12.0/photobiology/build/vignette.rds |binary photobiology-0.12.0/photobiology/data/filter-data.rda |binary photobiology-0.12.0/photobiology/data/response-data.rda |only photobiology-0.12.0/photobiology/inst/doc/userguide-0-r4p-introduction.html | 2 photobiology-0.12.0/photobiology/inst/doc/userguide-1-radiation.html | 1193 +++++----- photobiology-0.12.0/photobiology/man/A.illuminant.spct.Rd | 1 photobiology-0.12.0/photobiology/man/A2T.Rd | 10 photobiology-0.12.0/photobiology/man/Afr2T.Rd | 2 photobiology-0.12.0/photobiology/man/D50.illuminant.spct.Rd | 119 photobiology-0.12.0/photobiology/man/D65.illuminant.spct.Rd | 1 photobiology-0.12.0/photobiology/man/Ler_leaf.spct.Rd | 1 photobiology-0.12.0/photobiology/man/MathFun.Rd | 2 photobiology-0.12.0/photobiology/man/T2A.Rd | 2 photobiology-0.12.0/photobiology/man/T2Afr.Rd | 2 photobiology-0.12.0/photobiology/man/Trig.Rd | 2 photobiology-0.12.0/photobiology/man/any2T.Rd | 2 photobiology-0.12.0/photobiology/man/black_body.spct.Rd | 1 photobiology-0.12.0/photobiology/man/ccd.spct.Rd | 1 photobiology-0.12.0/photobiology/man/check_and_rename_vars.Rd | 2 photobiology-0.12.0/photobiology/man/check_spct.Rd | 12 photobiology-0.12.0/photobiology/man/clear.spct.Rd | 1 photobiology-0.12.0/photobiology/man/denormalize_spct.Rd |only photobiology-0.12.0/photobiology/man/div-.generic_spct.Rd | 2 photobiology-0.12.0/photobiology/man/e2q.Rd | 11 photobiology-0.12.0/photobiology/man/enable_check_spct.Rd | 10 photobiology-0.12.0/photobiology/man/energy_as_default.Rd | 2 photobiology-0.12.0/photobiology/man/f_dispatcher_spct.Rd | 2 photobiology-0.12.0/photobiology/man/filter_cps.mspct.Rd | 1 photobiology-0.12.0/photobiology/man/getNormalized.Rd | 2 photobiology-0.12.0/photobiology/man/green_leaf.spct.Rd | 1 photobiology-0.12.0/photobiology/man/log.Rd | 2 photobiology-0.12.0/photobiology/man/minus-.generic_spct.Rd | 2 photobiology-0.12.0/photobiology/man/mod-.generic_spct.Rd | 2 photobiology-0.12.0/photobiology/man/normalization.Rd | 50 photobiology-0.12.0/photobiology/man/normalize.Rd | 31 photobiology-0.12.0/photobiology/man/phenylalanine.spct.Rd | 1 photobiology-0.12.0/photobiology/man/photodiode.spct.Rd | 1 photobiology-0.12.0/photobiology/man/plus-.generic_spct.Rd | 2 photobiology-0.12.0/photobiology/man/pow-.generic_spct.Rd | 2 photobiology-0.12.0/photobiology/man/q2e.Rd | 9 photobiology-0.12.0/photobiology/man/range_check_Tfr.Rd |only photobiology-0.12.0/photobiology/man/round.Rd | 2 photobiology-0.12.0/photobiology/man/setFilterProperties.Rd | 23 photobiology-0.12.0/photobiology/man/sign.Rd | 2 photobiology-0.12.0/photobiology/man/slash-.generic_spct.Rd | 2 photobiology-0.12.0/photobiology/man/sun.spct.Rd | 1 photobiology-0.12.0/photobiology/man/sun_daily.spct.Rd | 169 - photobiology-0.12.0/photobiology/man/sun_evening.spct.Rd | 115 photobiology-0.12.0/photobiology/man/times-.generic_spct.Rd | 2 photobiology-0.12.0/photobiology/man/two_filters.spct.Rd | 143 - photobiology-0.12.0/photobiology/man/two_sensors.mspct.Rd |only photobiology-0.12.0/photobiology/man/using_Tfr.Rd | 2 photobiology-0.12.0/photobiology/man/verbose_as_default.Rd | 2 photobiology-0.12.0/photobiology/man/water.spct.Rd | 1 photobiology-0.12.0/photobiology/man/wb_trim_as_default.Rd | 2 photobiology-0.12.0/photobiology/man/white_led.source_spct.Rd | 1 99 files changed, 2115 insertions(+), 1886 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8 <https://v8.dev>: Google's open source JavaScript
and WebAssembly engine. This package can be compiled either with V8 version 6
and up or NodeJS when built as a shared library.
Author: Jeroen Ooms [aut, cre] ,
Jan Marvin Garbuszus [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between V8 versions 6.0.0 dated 2024-10-12 and 6.0.1 dated 2025-02-02
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS | 3 +++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/npm.R | 4 ++-- inst/doc/npm.html | 4 ++-- inst/doc/v8_intro.R | 24 +++++++++++++----------- inst/doc/v8_intro.html | 6 +++--- src/bindings.cpp | 4 ++-- 10 files changed, 37 insertions(+), 32 deletions(-)
Title: Interactively Visualize Structural Equation Modeling Diagrams
Description: It is an R package and web-based application, allowing users to perform interactive and reproducible visualizations of path diagrams for structural equation modeling (SEM) and networks using the 'ggplot2' engine. Its app (built with 'shiny') provides an interface that allows extensive customization, and creates CSV outputs, which can then be used to recreate the figures either using the web app or script-based workflow.
Author: Seung Hyun Min [aut, cre]
Maintainer: Seung Hyun Min <seung.min@mail.mcgill.ca>
Diff between ggsem versions 0.2.3 dated 2025-01-27 and 0.2.4 dated 2025-02-02
DESCRIPTION | 6 MD5 | 8 README.md | 2 inst/shiny/app.R | 179 +++++++++++++-------- inst/shiny/rsconnect/shinyapps.io/smin95/ggsem.dcf | 2 5 files changed, 125 insertions(+), 72 deletions(-)
Title: Client for Central Bank APIs
Description: A client for retrieving data and metadata from major central
bank APIs. It supports access to the 'Bundesbank SDMX Web Service API'
(<https://www.bundesbank.de/en/statistics/time-series-databases/help-for-sdmx-web-service/web-service-interface-data>),
the 'Swiss National Bank Data Portal' (<https://data.snb.ch/en>), and the
'European Central Bank Data Portal API'
(<https://data.ecb.europa.eu/help/api/overview>).
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between bbk versions 0.5.0 dated 2024-12-02 and 0.6.0 dated 2025-02-02
DESCRIPTION | 25 +++++---- MD5 | 42 ++++++++-------- NAMESPACE | 5 + NEWS.md | 22 +++++--- R/assertions.R | 18 ++++++ R/bbk-package.R | 11 +--- R/bbk.R | 91 ++++++++++++++++++----------------- R/ecb-euro-rates.R | 35 +++++++------ R/ecb.R | 60 ++++++++++------------- R/snb.R |only R/utils.R | 12 ---- README.md | 67 ++++++++++++++++--------- man/bbk-package.Rd | 4 - man/bbk_data.Rd | 21 ++++---- man/bbk_metadata.Rd | 10 ++- man/bbk_series.Rd | 9 ++- man/ecb_data.Rd | 17 +++--- man/ecb_euro_rates.Rd | 6 +- man/ecb_metadata.Rd | 10 ++- man/figures/README-plotting-1.png |binary man/snb_data.Rd |only tests/testthat/fixtures/snb-data.rds |only tests/testthat/test-ecb-euro-rates.R | 4 - tests/testthat/test-snb.R |only 24 files changed, 260 insertions(+), 209 deletions(-)
Title: Classification Evaluation Metrics
Description: A fast, robust and easy-to-use calculation
of multi-class classification evaluation metrics based on confusion matrix.
Author: G. Dudnik [aut, cre, cph]
Maintainer: G. Dudnik <gl.dudnik@gmail.com>
Diff between mltest versions 1.0.1 dated 2018-11-16 and 1.0.2 dated 2025-02-02
DESCRIPTION | 23 ++++++++++++++-------- MD5 | 10 +++++---- NEWS.md | 10 +++++++++ R/ml_test.R | 58 ++++++++++++++++++++++++++++----------------------------- build |only inst |only man/ml_test.Rd | 56 +++++++++++++++++++++++++++---------------------------- 7 files changed, 88 insertions(+), 69 deletions(-)
Title: Teaching Data for Statistics and Data Science
Description: Provides data sets for teaching statistics and data science courses.
It includes a sample of data from John Edmund Kerrich's famous
coinflip experiment. These are data that I used for statistics. The package
also contains an R Markdown template with the required formatting for
assignments in my former courses.
Author: Christopher Prener [aut, cre] ,
Bill Bradley [dtc],
NORC at the University of Chicago [dtc],
UN Inter-agency Group for Child Mortality Estimation [dtc],
U.S. Department of Energy [dtc]
Maintainer: Christopher Prener <chris.prener@gmail.com>
Diff between testDriveR versions 0.5.2 dated 2022-05-29 and 0.5.3 dated 2025-02-02
testDriveR-0.5.2/testDriveR/R/testDriveR-package.R |only testDriveR-0.5.2/testDriveR/man/testDriveR.Rd |only testDriveR-0.5.3/testDriveR/DESCRIPTION | 38 ++++++++++++------- testDriveR-0.5.3/testDriveR/MD5 | 8 +--- testDriveR-0.5.3/testDriveR/NEWS.md | 5 ++ testDriveR-0.5.3/testDriveR/README.md | 42 ++++++++++----------- 6 files changed, 54 insertions(+), 39 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.29 dated 2024-11-22 and 0.4.30 dated 2025-02-02
DESCRIPTION | 20 - MD5 | 16 - NEWS.md | 28 +- R/read-cid-spectravue-csv.r | 4 R/read-cie-csv.r | 58 +++- R/read-psi-spectrapen-csv.r | 2 README.md | 3 inst/doc/user-guide.html | 549 ++++++++++++++++++++++---------------------- man/read_CIE_csv.Rd | 14 - 9 files changed, 369 insertions(+), 325 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for (1) data management (e.g., grand-mean and group-mean centering, coding variables and reverse coding items, scale and cluster scores, reading and writing Excel and SPSS files), (2) descriptive statistics (e.g., frequency table, cross tabulation, effect size measures), (3) missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), (4) multilevel data (e.g., multilevel descriptive statistics, within-group and between-group correlation matrix, multilevel confirmatory factor analysis, level-specific fit indices, cross-level measurement equivalence evaluation, multilevel composite reliability, and multilevel R-squared measures), (5) item analysis (e.g., confirmatory factor analysis, coefficient alpha and omega, between-group and longitudinal measurement equivalence evaluation), (6) statistical analysis (e.g., bootstrap confidence intervals, collinearity and res [...truncated...]
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.6.8 dated 2024-10-24 and 0.7.0 dated 2025-02-02
misty-0.6.8/misty/R/size.cor.R |only misty-0.6.8/misty/R/size.prop.R |only misty-0.6.8/misty/man/size.cor.Rd |only misty-0.6.8/misty/man/size.prop.Rd |only misty-0.7.0/misty/DESCRIPTION | 16 misty-0.7.0/misty/MD5 | 400 +- misty-0.7.0/misty/NAMESPACE | 13 misty-0.7.0/misty/NEWS.md | 58 misty-0.7.0/misty/R/aov.b.R | 239 - misty-0.7.0/misty/R/aov.w.R | 337 -- misty-0.7.0/misty/R/as.na.R | 40 misty-0.7.0/misty/R/blimp.R | 115 misty-0.7.0/misty/R/blimp.bayes.R | 106 misty-0.7.0/misty/R/blimp.plot.R | 109 misty-0.7.0/misty/R/blimp.print.R | 88 misty-0.7.0/misty/R/blimp.run.R | 34 misty-0.7.0/misty/R/blimp.update.R | 59 misty-0.7.0/misty/R/center.R | 40 misty-0.7.0/misty/R/check.collin.R | 159 - misty-0.7.0/misty/R/check.outlier.R | 116 misty-0.7.0/misty/R/check.resid.R | 366 +- misty-0.7.0/misty/R/chr.color.R | 24 misty-0.7.0/misty/R/chr.grep.R | 60 misty-0.7.0/misty/R/chr.gsub.R | 158 - misty-0.7.0/misty/R/chr.omit.R | 17 misty-0.7.0/misty/R/chr.trim.R | 30 misty-0.7.0/misty/R/chr.trunc.R |only misty-0.7.0/misty/R/ci.cor.R |only misty-0.7.0/misty/R/ci.mean.R | 1494 ++++++---- misty-0.7.0/misty/R/ci.mean.diff.R | 415 -- misty-0.7.0/misty/R/ci.mean.w.R | 62 misty-0.7.0/misty/R/ci.prop.R | 951 ++++-- misty-0.7.0/misty/R/ci.prop.diff.R | 409 -- misty-0.7.0/misty/R/ci.var.R | 1422 ++++++---- misty-0.7.0/misty/R/cluster.scores.R | 52 misty-0.7.0/misty/R/coding.R | 23 misty-0.7.0/misty/R/cohens.d.R | 700 ---- misty-0.7.0/misty/R/cor.matrix.R | 141 misty-0.7.0/misty/R/crosstab.R | 107 misty-0.7.0/misty/R/descript.R | 321 -- misty-0.7.0/misty/R/df.check.R |only misty-0.7.0/misty/R/df.duplicated.R | 44 misty-0.7.0/misty/R/df.head.R |only misty-0.7.0/misty/R/df.merge.R | 34 misty-0.7.0/misty/R/df.move.R | 14 misty-0.7.0/misty/R/df.rbind.R | 2 misty-0.7.0/misty/R/df.rename.R | 21 misty-0.7.0/misty/R/df.sort.R | 53 misty-0.7.0/misty/R/df.subset.R | 16 misty-0.7.0/misty/R/dominance.R | 281 - misty-0.7.0/misty/R/dominance.manual.R | 179 - misty-0.7.0/misty/R/effsize.R | 98 misty-0.7.0/misty/R/freq.R | 150 - misty-0.7.0/misty/R/globals.R | 2 misty-0.7.0/misty/R/indirect.R | 42 misty-0.7.0/misty/R/item.alpha.R | 151 - misty-0.7.0/misty/R/item.cfa.R | 128 misty-0.7.0/misty/R/item.invar.R | 147 - misty-0.7.0/misty/R/item.omega.R | 124 misty-0.7.0/misty/R/item.reverse.R | 32 misty-0.7.0/misty/R/item.scores.R | 43 misty-0.7.0/misty/R/lagged.R | 41 misty-0.7.0/misty/R/libraries.R | 36 misty-0.7.0/misty/R/mplus.R | 53 misty-0.7.0/misty/R/mplus.bayes.R | 108 misty-0.7.0/misty/R/mplus.lca.R | 56 misty-0.7.0/misty/R/mplus.plot.R | 119 misty-0.7.0/misty/R/mplus.print.R | 35 misty-0.7.0/misty/R/mplus.run.R | 19 misty-0.7.0/misty/R/mplus.update.R | 47 misty-0.7.0/misty/R/multilevel.cfa.R | 155 - misty-0.7.0/misty/R/multilevel.cor.R | 248 - misty-0.7.0/misty/R/multilevel.descript.R | 86 misty-0.7.0/misty/R/multilevel.fit.R | 60 misty-0.7.0/misty/R/multilevel.icc.R | 62 misty-0.7.0/misty/R/multilevel.indirect.R | 38 misty-0.7.0/misty/R/multilevel.invar.R | 120 misty-0.7.0/misty/R/multilevel.omega.R | 182 - misty-0.7.0/misty/R/multilevel.r2.R | 39 misty-0.7.0/misty/R/multilevel.r2.manual.R | 69 misty-0.7.0/misty/R/na.auxiliary.R | 119 misty-0.7.0/misty/R/na.coverage.R | 86 misty-0.7.0/misty/R/na.descript.R | 84 misty-0.7.0/misty/R/na.indicator.R | 82 misty-0.7.0/misty/R/na.pattern.R | 128 misty-0.7.0/misty/R/na.prop.R | 35 misty-0.7.0/misty/R/na.satcor.R | 17 misty-0.7.0/misty/R/na.test.R | 80 misty-0.7.0/misty/R/print.misty.object.R | 2169 +++++++++++++-- misty-0.7.0/misty/R/read.data.R | 64 misty-0.7.0/misty/R/read.dta.R | 35 misty-0.7.0/misty/R/read.mplus.R | 13 misty-0.7.0/misty/R/read.sav.R | 38 misty-0.7.0/misty/R/read.xlsx.R | 22 misty-0.7.0/misty/R/rec.R | 47 misty-0.7.0/misty/R/restart.R | 6 misty-0.7.0/misty/R/result.lca.R | 81 misty-0.7.0/misty/R/robust.coef.R | 78 misty-0.7.0/misty/R/rwg.lindell.R | 120 misty-0.7.0/misty/R/script.copy.R | 30 misty-0.7.0/misty/R/script.new.R | 26 misty-0.7.0/misty/R/script.open.R | 62 misty-0.7.0/misty/R/setsource.R | 16 misty-0.7.0/misty/R/size.mean.R | 430 ++- misty-0.7.0/misty/R/skewness.R | 423 ++ misty-0.7.0/misty/R/std.coef.R | 104 misty-0.7.0/misty/R/test.levene.R | 148 - 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misty-0.7.0/misty/man/test.welch.Rd | 121 misty-0.7.0/misty/man/test.z.Rd | 223 - misty-0.7.0/misty/man/write.dta.Rd | 2 misty-0.7.0/misty/man/write.mplus.Rd | 1 misty-0.7.0/misty/man/write.result.Rd | 41 misty-0.7.0/misty/man/write.sav.Rd | 3 misty-0.7.0/misty/man/write.xlsx.Rd | 11 207 files changed, 15316 insertions(+), 11078 deletions(-)
Title: Summary Tables and Plots for Statistical Models and Data:
Beautiful, Customizable, and Publication-Ready
Description: Create beautiful and customizable tables to summarize several
statistical models side-by-side. Draw coefficient plots, multi-level
cross-tabs, dataset summaries, balance tables (a.k.a. "Table 1s"), and
correlation matrices. This package supports dozens of statistical models, and
it can produce tables in HTML, LaTeX, Word, Markdown, PDF, PowerPoint, Excel,
RTF, JPG, or PNG. Tables can easily be embedded in 'Rmarkdown' or 'knitr'
dynamic documents. Details can be found in Arel-Bundock (2022)
<doi:10.18637/jss.v103.i01>.
Author: Vincent Arel-Bundock [aut, cre]
,
Joachim Gassen [ctb] ,
Nathan Eastwood [ctb],
Nick Huntington-Klein [ctb] ,
Moritz Schwarz [ctb] ,
Benjamin Elbers [ctb] ,
Grant McDermott [ctb] ,
Lukas Wallrich [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between modelsummary versions 2.2.0 dated 2024-09-02 and 2.3.0 dated 2025-02-02
modelsummary-2.2.0/modelsummary/R/modelsummary_wide.R |only modelsummary-2.2.0/modelsummary/man/modelsummary_wide.Rd |only modelsummary-2.3.0/modelsummary/DESCRIPTION | 48 modelsummary-2.3.0/modelsummary/MD5 | 170 - modelsummary-2.3.0/modelsummary/NAMESPACE | 1 modelsummary-2.3.0/modelsummary/NEWS.md | 865 +++++----- modelsummary-2.3.0/modelsummary/R/bind_est_gof.R | 6 modelsummary-2.3.0/modelsummary/R/datasummary.R | 57 modelsummary-2.3.0/modelsummary/R/datasummary_balance.R | 559 +++--- modelsummary-2.3.0/modelsummary/R/datasummary_correlation.R | 101 - modelsummary-2.3.0/modelsummary/R/datasummary_crosstab.R | 258 +- modelsummary-2.3.0/modelsummary/R/datasummary_df.R | 47 modelsummary-2.3.0/modelsummary/R/datasummary_skim.R | 161 - modelsummary-2.3.0/modelsummary/R/factory_gt.R | 36 modelsummary-2.3.0/modelsummary/R/factory_kableExtra.R | 3 modelsummary-2.3.0/modelsummary/R/factory_tinytable.R | 21 modelsummary-2.3.0/modelsummary/R/fmt_factory.R | 24 modelsummary-2.3.0/modelsummary/R/get_estimates.R | 20 modelsummary-2.3.0/modelsummary/R/modelplot.R | 22 modelsummary-2.3.0/modelsummary/R/modelsummary.R | 474 ++--- modelsummary-2.3.0/modelsummary/R/modelsummary_rbind.R | 23 modelsummary-2.3.0/modelsummary/R/shape_estimates.R | 91 - modelsummary-2.3.0/modelsummary/R/stars.R | 4 modelsummary-2.3.0/modelsummary/R/utils_labels.R | 7 modelsummary-2.3.0/modelsummary/R/zzz.R | 18 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/align-md_dcolumn.txt | 86 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/datasummary_balance-escape_FALSE.txt | 112 + modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/datasummary_balance-escape_TRUE.txt | 112 + modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/datasummary_balance-issue711.txt | 121 + modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-caption_notes.txt | 28 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-correlation_latex.txt | 36 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-correlation_latex_FALSE.txt | 36 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-crosstab_latex.txt | 36 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-crosstab_latex_FALSE.txt | 36 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-datasummary_escape_colnames.txt | 9 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-datasummary_escape_colnames_FALSE.txt | 9 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-escape.html | 179 -- modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-escape_html_false.html | 179 -- modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-hat_I_formula.txt | 30 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-hat_fixest.txt | 34 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-issue707_01.txt | 8 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-issue707_02.txt | 9 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-issue707_03.txt | 8 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-issue707_04.txt | 9 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-latex.txt | 35 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-latex_tabular_escape_false.txt | 4 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-latex_tabular_escape_true.txt | 4 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-modelsummary.html | 167 - modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-modelsummary_latex.txt | 26 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-modelsummary_latex2.txt | 26 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-modelsummary_latex_tabular_FALSE.txt | 24 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-panel_escape_FALSE.txt | 50 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/escape-panel_escape_TRUE.txt | 50 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/gt-background_color.html | 16 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/gt-complex.html | 22 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/gt-title.html | 16 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/html-gof_omit.html | 63 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/latex-tabular.txt | 26 modelsummary-2.3.0/modelsummary/inst/tinytest/_tinysnapshot/mathmode-html_anything.html | 160 - 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modelsummary-2.3.0/modelsummary/inst/tinytest/test-shape.R | 205 +- modelsummary-2.3.0/modelsummary/man/datasummary.Rd | 44 modelsummary-2.3.0/modelsummary/man/datasummary_balance.Rd | 48 modelsummary-2.3.0/modelsummary/man/datasummary_correlation.Rd | 46 modelsummary-2.3.0/modelsummary/man/datasummary_crosstab.Rd | 46 modelsummary-2.3.0/modelsummary/man/datasummary_df.Rd | 29 modelsummary-2.3.0/modelsummary/man/datasummary_skim.Rd | 49 modelsummary-2.3.0/modelsummary/man/dsummary.Rd | 44 modelsummary-2.3.0/modelsummary/man/modelplot.Rd | 20 modelsummary-2.3.0/modelsummary/man/modelsummary.Rd | 157 + modelsummary-2.3.0/modelsummary/man/msummary.Rd | 157 + 88 files changed, 3541 insertions(+), 2973 deletions(-)
Title: Arellano-Bond LASSO Estimator for Dynamic Linear Panel Models
Description: Implements the Arellano-Bond estimation method combined with LASSO for dynamic linear panel models. See Chernozhukov et al. (2024) "Arellano-Bond LASSO Estimator for Dynamic Linear Panel Models". arXiv preprint <doi:10.48550/arXiv.2402.00584>.
Author: Victor Chernozhukov [aut],
Ivan Fernandez-Val [aut],
Chen Huang [aut],
Weining Wang [aut],
Junyu Chen [cre]
Maintainer: Junyu Chen <junyu.chen@outlook.de>
Diff between ablasso versions 1.0 dated 2024-05-03 and 1.1 dated 2025-02-02
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/multivariate.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Two Highly Customizable 'rmarkdown' Themes for Scientific
Reports
Description: Offers 'markdown' output formats designed with various styles, allowing users to generate HTML reports tailored for scientific or machine learning showcase. The output has a contemporary appearance with vibrant visuals, providing numerous styles for effective highlighting. Created using the 'tufte' <https://rstudio.github.io/tufte/> package code as a starting point.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between scientific versions 2024.2 dated 2024-05-08 and 2025.0 dated 2025-02-02
scientific-2024.2/scientific/R/handout.R |only scientific-2024.2/scientific/R/html.R |only scientific-2024.2/scientific/R/utils.R |only scientific-2024.2/scientific/inst/rmarkdown/templates/handout |only scientific-2024.2/scientific/inst/rmarkdown/templates/html/layout/index.ohtml |only scientific-2025.0/scientific/DESCRIPTION | 13 scientific-2025.0/scientific/MD5 | 34 scientific-2025.0/scientific/NAMESPACE | 2 scientific-2025.0/scientific/NEWS.md | 10 scientific-2025.0/scientific/R/base_func.R |only scientific-2025.0/scientific/R/markdown.R |only scientific-2025.0/scientific/README.md | 52 scientific-2025.0/scientific/inst/doc/Introduction.Rmd | 3 scientific-2025.0/scientific/inst/doc/Introduction.html | 9 scientific-2025.0/scientific/inst/rmarkdown/templates/html/layout/scientific1.css |40652 ---------- scientific-2025.0/scientific/inst/rmarkdown/templates/html/layout/template1.tpl |only scientific-2025.0/scientific/inst/rmarkdown/templates/html/layout/template2.tpl |only scientific-2025.0/scientific/inst/rmarkdown/templates/html/skeleton/skeleton.Rmd | 2 scientific-2025.0/scientific/inst/rmarkdown/templates/html/skeleton/skeleton2.Rmd |only scientific-2025.0/scientific/inst/rmarkdown/templates/html/template.yaml | 8 scientific-2025.0/scientific/man/handout.Rd | 206 scientific-2025.0/scientific/man/scientific-package.Rd | 4 scientific-2025.0/scientific/vignettes/Introduction.Rmd | 3 23 files changed, 168 insertions(+), 40830 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-09 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-31 0.1.2
2022-02-15 0.1.1
2021-05-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-30 1.4.0
2023-08-23 1.3.0
Title: Statistical Tools for Topological Data Analysis
Description: Tools for Topological Data Analysis. The package focuses on statistical analysis of persistent homology and density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' <https://project.inria.fr/gudhi/software/>, 'Dionysus' <https://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements methods from Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2015) <doi:10.20382/jocg.v6i2a8> for analyzing the statistical significance of persistent homology features.
Author: Brittany T. Fasy [aut],
Jisu Kim [aut, cre],
Fabrizio Lecci [aut],
Clement Maria [aut],
David L. Millman [aut],
Vincent Rouvreau. [aut]
Maintainer: Jisu Kim <jkim82133@snu.ac.kr>
Diff between TDA versions 1.9.1 dated 2024-01-24 and 1.9.4 dated 2025-02-02
DESCRIPTION | 53 - MD5 | 32 NEWS | 4 R/RcppExports.R | 134 +- build/vignette.rds |binary inst/doc/article.R | 1227 ++++++++++++-------------- inst/doc/article.Rnw | 42 inst/doc/article.pdf |binary man/TDA-package.Rd | 17 src/boost/container/detail/copy_move_algo.hpp | 81 - src/boost/container/detail/flat_tree.hpp | 451 +++++---- src/boost/container/flat_map.hpp | 598 +++++++----- src/boost/container/vector.hpp | 698 +++++++++----- src/gudhi/Miniball.COPYRIGHT | 8 src/gudhi/Miniball.README | 52 - vignettes/article.Rnw | 42 vignettes/biblio.bib | 75 - 17 files changed, 1939 insertions(+), 1575 deletions(-)
Title: Translate R Expressions to 'MathML' and 'LaTeX'/'MathJax'
Description: Translate R expressions to 'MathML' or 'MathJax'/'LaTeX' so that
they can be rendered in R markdown documents and shiny apps. This package
depends on R package 'rolog', which requires an installation of the
'SWI'-'Prolog' runtime either from 'swi-prolog.org' or from R
package 'rswipl'.
Author: Matthias Gondan [aut, cre, cph] ,
Irene Alfarone [aut] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between mathml versions 1.2 dated 2023-07-15 and 1.3 dated 2025-02-02
mathml-1.2/mathml/man/over.Rd |only mathml-1.3/mathml/.aspell |only mathml-1.3/mathml/DESCRIPTION | 17 mathml-1.3/mathml/MD5 | 36 - mathml-1.3/mathml/NAMESPACE | 1 mathml-1.3/mathml/NEWS.md | 5 mathml-1.3/mathml/R/mathml.R | 67 +- mathml-1.3/mathml/README.md | 24 mathml-1.3/mathml/build/vignette.rds |binary mathml-1.3/mathml/inst/doc/mathml.R | 70 ++ mathml-1.3/mathml/inst/doc/mathml.Rmd | 203 +++++-- mathml-1.3/mathml/inst/doc/mathml.html | 615 +++++++++++++----------- mathml-1.3/mathml/inst/pl/bussproofs.pl |only mathml-1.3/mathml/inst/pl/mathml.pl | 292 ++++++++++- mathml-1.3/mathml/inst/pl/pval.pl |only mathml-1.3/mathml/man/decorations.Rd | 15 mathml-1.3/mathml/man/hook.Rd | 13 mathml-1.3/mathml/man/mathml.Rd | 6 mathml-1.3/mathml/tests/test-bussproofs.Rmd |only mathml-1.3/mathml/tests/testthat/test-mathml.R | 23 mathml-1.3/mathml/vignettes/bibliography.bibtex | 10 mathml-1.3/mathml/vignettes/mathml.Rmd | 203 +++++-- 22 files changed, 1159 insertions(+), 441 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-05 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-27 0.75
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-03 1.1.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-11 1.2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-09 0.10.1
2024-05-03 0.10.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-24 1.0.6
2024-04-22 1.0.5
2021-11-22 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-10 0.0.6
Title: Fit Dynamic Structural Equation Models
Description: Applies dynamic structural equation models to time-series data
with generic and simplified specification for simultaneous and lagged
effects. Methods are described in Thorson et al. (2024)
"Dynamic structural equation models synthesize ecosystem dynamics
constrained by ecological mechanisms."
Author: James Thorson [aut, cre] ,
Maurice Goodman [ctb]
Maintainer: James Thorson <James.Thorson@noaa.gov>
Diff between dsem versions 1.4.0 dated 2025-01-13 and 1.4.1 dated 2025-02-01
DESCRIPTION | 19 ++-- MD5 | 30 +++--- NEWS.md | 5 + R/dsem.R | 8 - R/make_dsem_ram.R | 42 ++++++--- R/make_matrices.R | 2 R/read_model.R | 13 +- R/utility.R | 2 README.md | 4 inst/doc/vignette.Rmd | 2 inst/doc/vignette.html | 4 man/cAIC.Rd | 110 ++++++++++++------------ man/dsemRTMB.Rd | 182 ++++++++++++++++++++--------------------- man/read_model.Rd | 54 ++++++------ tests/testthat/test-platform.R | 41 +++++++++ vignettes/vignette.Rmd | 2 16 files changed, 295 insertions(+), 225 deletions(-)
Title: Thematic Plots for Mazama Spatial Datasets
Description: A suite of convenience functions for generating US state and county
thematic maps using datasets from the MazamaSpatialUtils package.
Author: Jonathan Callahan [aut, cre],
Rachel Carroll [aut],
Eli Grosman [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaSpatialPlots versions 0.2.0 dated 2022-11-15 and 0.3.0 dated 2025-02-01
MazamaSpatialPlots-0.2.0/MazamaSpatialPlots/vignettes/articles/Opportunity_Insights.Rmd |only MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/DESCRIPTION | 13 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/MD5 | 31 - MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/NEWS.md | 6 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/R/countyMap.R | 141 ++++--- MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/R/stateMap.R | 178 +++++----- MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/README.md | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/inst/doc/MazamaSpatialPlots.R | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/inst/doc/MazamaSpatialPlots.Rmd | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/inst/doc/MazamaSpatialPlots.html | 40 +- MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/man/countyMap.Rd | 73 ++-- MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/man/stateMap.Rd | 62 +-- MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/tests/testthat/test-countyMap.R | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/tests/testthat/test-stateMap.R | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/vignettes/MazamaSpatialPlots.Rmd | 2 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/vignettes/articles/Creating_State_Maps.Rmd | 9 MazamaSpatialPlots-0.3.0/MazamaSpatialPlots/vignettes/articles/Customizing_State_Maps.Rmd | 55 +-- 17 files changed, 334 insertions(+), 286 deletions(-)
More information about MazamaSpatialPlots at CRAN
Permanent link
Title: Clustering of Functional Data Based on Measures of Change
Description: Implements a three-step procedure in the spirit of Leffondre et al. (2004) to identify clusters of individual longitudinal trajectories. The procedure involves (1) computing a number of "measures of change" capturing various features of the trajectories; (2) using a Principal Component Analysis based dimension reduction algorithm to select a subset of measures and (3) using the k-medoids or k-means algorithm to identify clusters of trajectories.
Author: Marie-Pierre Sylvestre [aut],
Laurence Boulanger [aut, cre],
Gillis Delmas Tchouangue Dinkou [ctb],
Dan Vatnik [ctb]
Maintainer: Laurence Boulanger <laurence.boulanger@umontreal.ca>
Diff between traj versions 2.2.0 dated 2024-07-04 and 2.2.1 dated 2025-02-01
DESCRIPTION | 8 - MD5 | 30 ++-- NAMESPACE | 2 NEWS.md | 10 + R/Step1Measures.R | 201 ++++++++++++++++++--------------- R/Step3Clusters.R | 44 ------- R/plot.trajClusters.R | 225 +++++++++++++++++------------------- README.md | 4 inst/doc/traj_vignette.R | 20 +-- inst/doc/traj_vignette.Rmd | 116 +++++++++---------- inst/doc/traj_vignette.html | 268 ++++++++++++++++++++++---------------------- man/Step1Measures.Rd | 17 +- man/Step3Clusters.Rd | 16 -- man/plot.trajClusters.Rd | 15 +- man/traj-package.Rd | 2 vignettes/traj_vignette.Rmd | 116 +++++++++---------- 16 files changed, 538 insertions(+), 556 deletions(-)
Title: Remote Sensing Data Analysis
Description: Toolbox for remote sensing image processing and analysis such as
calculating spectral indexes, principal component transformation, unsupervised
and supervised classification or fractional cover analyses.
Author: Benjamin Leutner [aut] ,
Ned Horning [aut],
Jakob Schwalb-Willmann [aut] ,
Robert J. Hijmans [ctb] ,
Konstantin Mueller [aut, cre]
Maintainer: Konstantin Mueller <konstantinfinn.mueller@gmx.de>
Diff between RStoolbox versions 1.0.1 dated 2025-02-01 and 1.0.2 dated 2025-02-01
RStoolbox-1.0.1/RStoolbox/src/tinyexpr.c |only RStoolbox-1.0.1/RStoolbox/src/tinyexpr.h |only RStoolbox-1.0.2/RStoolbox/DESCRIPTION | 6 RStoolbox-1.0.2/RStoolbox/MD5 | 12 - RStoolbox-1.0.2/RStoolbox/NEWS.md | 6 RStoolbox-1.0.2/RStoolbox/R/spectralIndices.R | 3 RStoolbox-1.0.2/RStoolbox/man/spectralIndices.Rd | 27 +++ RStoolbox-1.0.2/RStoolbox/src/spectralIndices.cpp | 160 ++++++++++++++++------ 8 files changed, 166 insertions(+), 48 deletions(-)
Title: Convenience Functions for Psychology
Description: Make your workflow faster and easier. Easily customizable
plots (via 'ggplot2'), nice APA tables (following the style of the
*American Psychological Association*) exportable to Word (via
'flextable'), easily run statistical tests or check assumptions, and
automatize various other tasks.
Author: Remi Theriault [aut, cre]
Maintainer: Remi Theriault <remi.theriault@mail.mcgill.ca>
Diff between rempsyc versions 0.1.8 dated 2024-07-01 and 0.1.9 dated 2025-02-01
rempsyc-0.1.8/rempsyc/inst/doc/circles.R |only rempsyc-0.1.8/rempsyc/inst/doc/circles.Rmd |only rempsyc-0.1.8/rempsyc/inst/doc/circles.html |only rempsyc-0.1.8/rempsyc/inst/doc/randomize.R |only rempsyc-0.1.8/rempsyc/inst/doc/randomize.Rmd |only rempsyc-0.1.8/rempsyc/inst/doc/randomize.html |only rempsyc-0.1.8/rempsyc/vignettes/circles.Rmd |only rempsyc-0.1.8/rempsyc/vignettes/randomize.Rmd |only rempsyc-0.1.9/rempsyc/DESCRIPTION | 12 rempsyc-0.1.9/rempsyc/MD5 | 56 -- rempsyc-0.1.9/rempsyc/NEWS.md | 14 rempsyc-0.1.9/rempsyc/R/best_duplicate.R | 2 rempsyc-0.1.9/rempsyc/R/cormatrix_excel.R | 399 ---------------- rempsyc-0.1.9/rempsyc/R/nice_density.R | 4 rempsyc-0.1.9/rempsyc/R/nice_lm.R | 8 rempsyc-0.1.9/rempsyc/R/nice_t_test.R | 17 rempsyc-0.1.9/rempsyc/R/plot_means_over_time.R | 107 ++-- rempsyc-0.1.9/rempsyc/build/vignette.rds |binary rempsyc-0.1.9/rempsyc/inst/WORDLIST | 18 rempsyc-0.1.9/rempsyc/inst/doc/assumptions.Rmd | 2 rempsyc-0.1.9/rempsyc/inst/doc/assumptions.html | 38 - rempsyc-0.1.9/rempsyc/inst/doc/contrasts.html | 18 rempsyc-0.1.9/rempsyc/inst/doc/moderation.Rmd | 2 rempsyc-0.1.9/rempsyc/inst/doc/moderation.html | 30 - rempsyc-0.1.9/rempsyc/inst/doc/scatter.html | 50 +- rempsyc-0.1.9/rempsyc/inst/doc/t-test.html | 28 - rempsyc-0.1.9/rempsyc/inst/doc/table.html | 93 ++- rempsyc-0.1.9/rempsyc/inst/doc/violin.html | 34 - rempsyc-0.1.9/rempsyc/man/cormatrix_excel.Rd | 7 rempsyc-0.1.9/rempsyc/man/plot_means_over_time.Rd | 7 rempsyc-0.1.9/rempsyc/tests/testthat/test-nice_t_test.R | 2 rempsyc-0.1.9/rempsyc/vignettes/assumptions.Rmd | 2 rempsyc-0.1.9/rempsyc/vignettes/moderation.Rmd | 2 33 files changed, 315 insertions(+), 637 deletions(-)
More information about RegrCoeffsExplorer at CRAN
Permanent link
Title: Cross-Platform 'zip' Compression
Description: Cross-Platform 'zip' Compression Library. A replacement for
the 'zip' function, that does not require any additional external
tools on any platform.
Author: Gabor Csardi [aut, cre],
Kuba Podgorski [ctb],
Rich Geldreich [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between zip versions 2.3.1 dated 2024-01-27 and 2.3.2 dated 2025-02-01
DESCRIPTION | 8 +-- MD5 | 19 ++++---- NEWS.md | 5 ++ R/compat-vctrs.R |only R/utils.R | 15 ++---- R/zip.R | 6 +- README.md | 105 ++++++++---------------------------------------- man/zip-package.Rd | 2 src/rzip.c | 4 - src/zip.c | 2 tests/testthat/helper.R | 3 - 11 files changed, 51 insertions(+), 118 deletions(-)
Title: Sorted L1 Penalized Estimation
Description: Efficient implementations for Sorted L-One Penalized Estimation
(SLOPE): generalized linear models regularized with the sorted L1-norm
(Bogdan et al. 2015). Supported models include
ordinary least-squares regression, binomial regression, multinomial
regression, and Poisson regression. Both dense and sparse predictor
matrices are supported. In addition, the package features predictor
screening rules that enable fast and efficient solutions to high-dimensional
problems.
Author: Johan Larsson [aut, cre] ,
Jonas Wallin [aut] ,
Malgorzata Bogdan [aut],
Ewout van den Berg [aut],
Chiara Sabatti [aut],
Emmanuel Candes [aut],
Evan Patterson [aut],
Weijie Su [aut],
Jakub Kala [aut],
Krystyna Grzesiak [aut],
Michal Burdukiewicz [aut [...truncated...]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between SLOPE versions 0.5.1 dated 2024-07-09 and 0.5.2 dated 2025-02-01
DESCRIPTION | 6 +-- MD5 | 38 ++++++++++----------- NEWS.md | 7 ++++ R/trainSLOPE.R | 27 ++++++++------- build/vignette.rds |binary inst/doc/introduction.html | 17 +++++---- inst/doc/prox-algs.html | 10 ++--- src/Results.cpp | 3 + src/SolverResults.cpp | 3 + src/families/binomial.h | 3 + src/families/family.h | 23 ++++++------- src/families/gaussian.h | 5 +- src/families/multinomial.h | 11 +++--- src/families/poisson.h | 3 + src/lambdaSequence.cpp | 2 - src/prox.h | 2 - src/rcppSLOPE.cpp | 78 ++++++++++++++++++++++----------------------- src/regularizationPath.h | 2 - src/rescale.h | 1 src/utils.h | 2 - 20 files changed, 129 insertions(+), 114 deletions(-)
Title: Image Processing for Simulated Cameras
Description: Uses convolution-based techniques to generate simulated camera bokeh, depth of field, and other camera effects, using an image and an optional depth map. Accepts both filename inputs and in-memory array representations of images and matrices. Includes functions to perform 2D convolutions, reorient and resize images/matrices, add image and text overlays, generate camera vignette effects, and add titles to images.
Author: Tyler Morgan-Wall [aut, cph, cre]
,
Sean Barrett [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayimage versions 0.11.0 dated 2024-07-13 and 0.15.1 dated 2025-02-01
rayimage-0.11.0/rayimage/R/add_image_overlay.R |only rayimage-0.11.0/rayimage/R/add_title.R |only rayimage-0.11.0/rayimage/R/add_vignette.R |only rayimage-0.15.1/rayimage/DESCRIPTION | 15 +- rayimage-0.15.1/rayimage/MD5 | 65 +++++++----- rayimage-0.15.1/rayimage/NAMESPACE | 7 + rayimage-0.15.1/rayimage/R/add_padding.R | 70 ++++++------- rayimage-0.15.1/rayimage/R/get_string_dimensions.R |only rayimage-0.15.1/rayimage/R/handle_image_output.R |only rayimage-0.15.1/rayimage/R/plot_asp_native_raster.R | 47 +++++---- rayimage-0.15.1/rayimage/R/plot_image.R | 29 +++-- rayimage-0.15.1/rayimage/R/plot_image_grid.R | 9 + rayimage-0.15.1/rayimage/R/ray_read_image.R | 13 +- rayimage-0.15.1/rayimage/R/ray_write_image.R | 32 +++--- rayimage-0.15.1/rayimage/R/render_bokeh.R | 17 --- rayimage-0.15.1/rayimage/R/render_bw.R | 18 --- rayimage-0.15.1/rayimage/R/render_convolution.R | 11 -- rayimage-0.15.1/rayimage/R/render_convolution_fft.R | 11 -- rayimage-0.15.1/rayimage/R/render_image_overlay.R |only rayimage-0.15.1/rayimage/R/render_reorient.R | 16 --- rayimage-0.15.1/rayimage/R/render_resized.R | 19 --- rayimage-0.15.1/rayimage/R/render_text_image.R |only rayimage-0.15.1/rayimage/R/render_title.R |only rayimage-0.15.1/rayimage/R/render_vignette.R |only rayimage-0.15.1/rayimage/man/add_image_overlay.Rd | 31 ------ rayimage-0.15.1/rayimage/man/add_multi_padding.Rd | 6 - rayimage-0.15.1/rayimage/man/add_padding.Rd | 6 - rayimage-0.15.1/rayimage/man/add_title.Rd | 87 +---------------- rayimage-0.15.1/rayimage/man/add_vignette.Rd | 48 --------- rayimage-0.15.1/rayimage/man/get_string_dimensions.Rd |only rayimage-0.15.1/rayimage/man/handle_image_output.Rd |only rayimage-0.15.1/rayimage/man/plot_asp_native_raster.Rd | 8 + rayimage-0.15.1/rayimage/man/plot_image.Rd | 8 + rayimage-0.15.1/rayimage/man/plot_image_grid.Rd | 10 + rayimage-0.15.1/rayimage/man/render_bw.Rd | 2 rayimage-0.15.1/rayimage/man/render_image_overlay.Rd |only rayimage-0.15.1/rayimage/man/render_resized.Rd | 8 - rayimage-0.15.1/rayimage/man/render_text_image.Rd |only rayimage-0.15.1/rayimage/man/render_title.Rd |only rayimage-0.15.1/rayimage/man/render_vignette.Rd |only rayimage-0.15.1/rayimage/man/trim_padding.Rd | 6 - 41 files changed, 229 insertions(+), 370 deletions(-)
Title: Genetic Analysis of Pooled Samples
Description: Analyzing genetic data obtained from pooled samples.
This package can read in Fragment Analysis output files, process the data,
and score peaks, as well as facilitate various analyses, including cluster
analysis, calculation of genetic distances and diversity indices,
as well as bootstrap resampling for statistical inference. Specifically
tailored to handle genetic data efficiently, researchers can explore
population structure, genetic differentiation, and genetic relatedness
among samples. We updated some functions from Covarrubias-Pazaran et al.
(2016) <doi:10.1186/s12863-016-0365-6> to allow for the use of new file formats
and referenced the following to write our genetic analysis functions:
Long et al. (2022) <doi:10.1038/s41598-022-04776-0>, Jost (2008)
<doi:10.1111/j.1365-294x.2008.03887.x>, Nei (1973)
<doi:10.1073/pnas.70.12.3321>, Foulley et al. (2006)
<doi:10.1016/j.livprodsci.2005.10.021>, Chao et al. (2008)
<doi:10.1111/j.1541-0420.2008.01010 [...truncated...]
Author: Kathleen Kuesters [aut, cre, cph]
,
Jeffrey Long [aut],
Jessica Blanton [aut],
Walter Blank [ctb],
Jeffrey Kovach [ctb],
Ronald Blanton [ctb]
Maintainer: Kathleen Kuesters <kathleen.kuesters@gmail.com>
Diff between pooledpeaks versions 1.0.7 dated 2024-11-19 and 1.1.0 dated 2025-02-01
DESCRIPTION | 9 ++++---- MD5 | 17 ++++++++++++--- NEWS.md | 2 + README.md | 50 ++++++++++++++++++++++++++++++++++++--------- build/vignette.rds |only inst/doc |only inst/paper.html |only inst/paper.md |only inst/pooledpeaks_paper.bib |only vignettes |only 10 files changed, 61 insertions(+), 17 deletions(-)
Title: Gene by Environment Interaction and Conditional Gene Tests for
Nuclear Families
Description: Does family-based gene by environment interaction tests, joint gene, gene-environment interaction test, and a test of a set of genes conditional on another set of genes.
Author: Thomas Hoffmann [aut, cre]
Maintainer: Thomas Hoffmann <tjhoffm@gmail.com>
Diff between fbati versions 1.0-9 dated 2024-02-02 and 1.0-11 dated 2025-02-01
fbati-1.0-11/fbati/DESCRIPTION | 17 +- fbati-1.0-11/fbati/MD5 | 30 ++-- fbati-1.0-11/fbati/NAMESPACE | 2 fbati-1.0-11/fbati/R/cpp_cgFbat.R |only fbati-1.0-11/fbati/R/cpp_datamatrix.R |only fbati-1.0-11/fbati/R/cpp_fbatdist.R |only fbati-1.0-11/fbati/R/cpp_joint.R |only fbati-1.0-11/fbati/R/cpp_nuclify.R |only fbati-1.0-11/fbati/R/fbatcStrategyStep.R | 2 fbati-1.0-11/fbati/R/fbati.R | 215 ++++++++++++++++++++++++++++--- fbati-1.0-11/fbati/R/ibat.R | 6 fbati-1.0-11/fbati/R/joint.R | 59 ++++++-- fbati-1.0-11/fbati/R/merge.R | 111 ++++++++-------- fbati-1.0-11/fbati/man/fbatge.Rd | 10 - fbati-1.0-11/fbati/man/fbati.Rd | 10 - fbati-1.0-11/fbati/man/launchpad.Rd | 1 fbati-1.0-11/fbati/src/fbati_init.c | 4 fbati-1.0-9/fbati/man/fbatj.Rd |only fbati-1.0-9/fbati/src/fbati.cpp |only fbati-1.0-9/fbati/src/fbati.h |only 20 files changed, 350 insertions(+), 117 deletions(-)
Title: Centered Isotonic Regression and Dose-Response Utilities
Description: Isotonic regression (IR) and its improvement: centered isotonic regression (CIR). CIR is recommended in particular with small samples. Also, interval estimates for both, and additional utilities such as plotting dose-response data. For dev version and change history, see GitHub assaforon/cir.
Author: Assaf P. Oron [cre, aut]
Maintainer: Assaf P. Oron <assaf.oron@gmail.com>
Diff between cir versions 2.5.0 dated 2024-12-02 and 2.5.1 dated 2025-02-01
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/invCIR.r | 14 ++++---------- inst/doc/BenHamou03.html | 4 ++-- man/doseFind.Rd | 4 ++-- 5 files changed, 16 insertions(+), 22 deletions(-)
Title: Various Methods for the Two Sample Problem
Description: The routine twosample_test() in this package runs the
two sample test using various test statistic. The p values are
found via permutation or large sample theory. The routine twosample_power() allows the
calculation of the power in various cases, and plot_power() draws the corresponding power graphs.
The routine run.studies allows a user to quickly study the power of a new method and
how it compares to some of the standard ones.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between R2sample versions 2.2.0 dated 2024-10-21 and 3.0.0 dated 2025-02-01
R2sample-2.2.0/R2sample/inst/extdata |only R2sample-3.0.0/R2sample/DESCRIPTION | 18 R2sample-3.0.0/R2sample/MD5 | 54 +- R2sample-3.0.0/R2sample/NAMESPACE | 28 + R2sample-3.0.0/R2sample/NEWS.md | 4 R2sample-3.0.0/R2sample/R/R2sample-package.R |only R2sample-3.0.0/R2sample/R/RcppExports.R | 11 R2sample-3.0.0/R2sample/R/case.studies.R |only R2sample-3.0.0/R2sample/R/chi_power.R | 4 R2sample-3.0.0/R2sample/R/chi_test.R | 8 R2sample-3.0.0/R2sample/R/data.R |only R2sample-3.0.0/R2sample/R/plot_power.R | 2 R2sample-3.0.0/R2sample/R/power_newtest.R |only R2sample-3.0.0/R2sample/R/run.studies.R |only R2sample-3.0.0/R2sample/R/twosample_power.R | 27 - R2sample-3.0.0/R2sample/build/vignette.rds |binary R2sample-3.0.0/R2sample/data |only R2sample-3.0.0/R2sample/inst/doc/R2sample.R | 85 ++- R2sample-3.0.0/R2sample/inst/doc/R2sample.Rmd | 150 ++++++ R2sample-3.0.0/R2sample/inst/doc/R2sample.html | 228 ++++++++-- R2sample-3.0.0/R2sample/inst/shiny-example/r2sample_shiny/server.R | 6 R2sample-3.0.0/R2sample/inst/shiny-example/r2sample_shiny/ui.R | 4 R2sample-3.0.0/R2sample/man/R2sample-package.Rd |only R2sample-3.0.0/R2sample/man/case.studies.Rd |only R2sample-3.0.0/R2sample/man/myTS2.Rd |only R2sample-3.0.0/R2sample/man/plot_power.Rd | 2 R2sample-3.0.0/R2sample/man/power_newtest.Rd |only R2sample-3.0.0/R2sample/man/power_studies_results.Rd |only R2sample-3.0.0/R2sample/man/pvaluecdf.Rd |only R2sample-3.0.0/R2sample/man/run.studies.Rd |only R2sample-3.0.0/R2sample/man/twosample_power.Rd | 4 R2sample-3.0.0/R2sample/src/RcppExports.cpp | 14 R2sample-3.0.0/R2sample/src/TS_cont.cpp | 2 R2sample-3.0.0/R2sample/src/myTS2.cpp |only R2sample-3.0.0/R2sample/vignettes/R2sample.Rmd | 150 ++++++ 35 files changed, 656 insertions(+), 145 deletions(-)
Title: Constrained, Covariance-Matching Constrained and Universal Point
or Block Kriging
Description: Provides functions for efficient computation of non-linear spatial predictions with local change of support (Hofer, C. and Papritz, A. (2011) "constrainedKriging: An R-package for customary, constrained and covariance-matching constrained point or block kriging" <doi:10.1016/j.cageo.2011.02.009>). This package supplies functions for two-dimensional spatial interpolation by constrained (Cressie, N. (1993) "Aggregation in geostatistical problems" <doi:10.1007/978-94-011-1739-5_3>), covariance-matching constrained (Aldworth, J. and Cressie, N. (2003) "Prediction of nonlinear spatial functionals" <doi:10.1016/S0378-3758(02)00321-X>) and universal (external drift) Kriging for points or blocks of any shape from data with a non-stationary mean function and an isotropic weakly stationary covariance function. The linear spatial interpolation methods, constrained and covariance-matching constrained Kriging, provide approximately unbiased prediction for non-linear target value [...truncated...]
Author: Christoph Hofer [aut],
Andreas Papritz [ctb, cre]
Maintainer: Andreas Papritz <papritz@retired.ethz.ch>
Diff between constrainedKriging versions 0.2-9 dated 2025-01-07 and 0.2-10 dated 2025-02-01
DESCRIPTION | 10 MD5 | 26 - R/f.pixelgrid.sfc.R | 9 R/f.point.rec.covmat.R | 7 inst/ChangeLog.txt | 18 man/CKrige.Rd | 42 +- man/ckcolors.Rd | 2 man/covmodel.Rd | 11 src/covariancefunctions.h | 656 ++++++++++++++++--------------- src/freqdist.h | 219 +++++----- src/init.c | 20 src/intboundaries.h | 916 ++++++++++++++++++++++---------------------- src/point_block_cov.c | 951 +++++++++++++++++++++++----------------------- src/scalePixelCoord.h | 127 +++--- 14 files changed, 1562 insertions(+), 1452 deletions(-)
More information about constrainedKriging at CRAN
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Title: Spatiotemporal Arrays, Raster and Vector Data Cubes
Description: Reading, manipulating, writing and plotting
spatiotemporal arrays (raster and vector data cubes) in 'R', using 'GDAL'
bindings provided by 'sf', and 'NetCDF' bindings by 'ncmeta' and 'RNetCDF'.
Author: Edzer Pebesma [aut, cre] ,
Michael Sumner [ctb] ,
Etienne Racine [ctb],
Adriano Fantini [ctb],
David Blodgett [ctb],
Krzysztof Dyba [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between stars versions 0.6-7 dated 2024-11-07 and 0.6-8 dated 2025-02-01
DESCRIPTION | 6 +- MD5 | 94 +++++++++++++++++++++---------------------- NEWS.md | 10 ++++ R/dimensions.R | 11 +++-- R/plot.R | 7 +-- R/proxy.R | 4 + R/spatstat.R | 8 +++ R/stars.R | 21 ++++++--- R/tidyverse.R | 2 R/warp.R | 11 +---- build/vignette.rds |binary inst/doc/stars1.html | 6 +- inst/doc/stars2.R | 12 ++--- inst/doc/stars2.html | 12 ++--- inst/doc/stars4.R | 2 inst/doc/stars4.html | 2 man/plot.Rd | 2 tests/aggregate.Rout.save | 8 +-- tests/align.Rout.save | 6 +- tests/area.Rout.save | 6 +- tests/crop.Rout.save | 6 +- tests/curvilinear.Rout.save | 6 +- tests/datasets.Rout.save | 6 +- tests/dimensions.Rout.save | 6 +- tests/downsample.Rout.save | 6 +- tests/ee.Rout.save | 6 +- tests/extract.Rout.save | 6 +- tests/gridtypes.Rout.save | 6 +- tests/mdim.Rout.save | 6 +- tests/nc.Rout.save | 6 +- tests/plot.Rout.save | 6 +- tests/predict.Rout.save | 10 ++-- tests/proxy.Rout.save | 22 +++++----- tests/raster.Rout.save | 6 +- tests/rasterize.Rout.save | 6 +- tests/rectilinear.Rout.save | 6 +- tests/redimension.Rout.save | 6 +- tests/sf.Rout.save | 6 +- tests/sp.Rout.save | 6 +- tests/spacetime.Rout.save | 6 +- tests/spatstat.Rout.save | 6 +- tests/stars.Rout.save | 6 +- tests/subset.Rout.save | 6 +- tests/testthat/test-cubble.R | 4 + tests/tidy.Rout.save | 6 +- tests/transform.Rout.save | 8 +-- tests/warp.Rout.save | 6 +- tests/write.Rout.save | 6 +- 48 files changed, 222 insertions(+), 196 deletions(-)
Title: 1d Goodness of Fit Tests
Description: Routines that allow the user to run a large number of goodness-of-fit tests.
It allows for data to be continuous or discrete. It includes routines to estimate
the power of the tests and display them as a power graph.
The routine run.studies allows a user to quickly study the power of a new method and
how it compares to some of the standard ones.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between Rgof versions 2.1.1 dated 2024-10-21 and 3.0.0 dated 2025-02-01
Rgof-2.1.1/Rgof/inst/extdata |only Rgof-3.0.0/Rgof/DESCRIPTION | 17 - Rgof-3.0.0/Rgof/MD5 | 91 +++--- Rgof-3.0.0/Rgof/NAMESPACE | 26 + Rgof-3.0.0/Rgof/NEWS.md | 4 Rgof-3.0.0/Rgof/R/RcppExports.R | 43 +-- Rgof-3.0.0/Rgof/R/Rgof-package.R |only Rgof-3.0.0/Rgof/R/case.studies.R |only Rgof-3.0.0/Rgof/R/check.functions.R | 4 Rgof-3.0.0/Rgof/R/data.R |only Rgof-3.0.0/Rgof/R/gof_power.R | 6 Rgof-3.0.0/Rgof/R/gof_power_cont.R | 49 +-- Rgof-3.0.0/Rgof/R/gof_power_disc.R | 29 -- Rgof-3.0.0/Rgof/R/gof_test.R | 7 Rgof-3.0.0/Rgof/R/gof_test_cont.R | 25 - Rgof-3.0.0/Rgof/R/gof_test_cont_adj.R | 67 +--- Rgof-3.0.0/Rgof/R/gof_test_disc.R | 14 Rgof-3.0.0/Rgof/R/gof_test_disc_adj.R | 42 +- Rgof-3.0.0/Rgof/R/make_bins_cont.R | 4 Rgof-3.0.0/Rgof/R/make_bins_disc.R | 2 Rgof-3.0.0/Rgof/R/power_newtest.R |only Rgof-3.0.0/Rgof/R/run.studies.R |only Rgof-3.0.0/Rgof/build/vignette.rds |binary Rgof-3.0.0/Rgof/data |only Rgof-3.0.0/Rgof/inst/doc/Rgof.R | 100 ++++--- Rgof-3.0.0/Rgof/inst/doc/Rgof.Rmd | 214 ++++++++++++--- Rgof-3.0.0/Rgof/inst/doc/Rgof.html | 381 ++++++++++++++++++++------- Rgof-3.0.0/Rgof/man/Rgof-package.Rd |only Rgof-3.0.0/Rgof/man/TS_cont.Rd | 7 Rgof-3.0.0/Rgof/man/TS_disc.Rd | 7 Rgof-3.0.0/Rgof/man/TSw_cont.Rd | 6 Rgof-3.0.0/Rgof/man/TSw_disc.Rd | 6 Rgof-3.0.0/Rgof/man/case.studies.Rd |only Rgof-3.0.0/Rgof/man/newTSdisc.Rd |only Rgof-3.0.0/Rgof/man/power_newtest.Rd |only Rgof-3.0.0/Rgof/man/power_studies_results.Rd |only Rgof-3.0.0/Rgof/man/pvaluecdf.Rd |only Rgof-3.0.0/Rgof/man/run.studies.Rd |only Rgof-3.0.0/Rgof/src/RcppExports.cpp | 66 ++-- Rgof-3.0.0/Rgof/src/TS_cont.cpp | 29 +- Rgof-3.0.0/Rgof/src/TS_cont.h | 2 Rgof-3.0.0/Rgof/src/TS_disc.cpp | 22 + Rgof-3.0.0/Rgof/src/TS_disc.h | 3 Rgof-3.0.0/Rgof/src/TSw_cont.cpp | 14 Rgof-3.0.0/Rgof/src/TSw_cont.h | 2 Rgof-3.0.0/Rgof/src/TSw_disc.cpp | 21 + Rgof-3.0.0/Rgof/src/TSw_disc.h | 5 Rgof-3.0.0/Rgof/src/gof_cont.cpp | 18 - Rgof-3.0.0/Rgof/src/gof_disc.cpp | 23 - Rgof-3.0.0/Rgof/src/newTSdisc.cpp |only Rgof-3.0.0/Rgof/src/newTSdisc.h |only Rgof-3.0.0/Rgof/src/power_cont.cpp | 10 Rgof-3.0.0/Rgof/src/power_disc.cpp | 7 Rgof-3.0.0/Rgof/vignettes/Rgof.Rmd | 214 ++++++++++++--- 54 files changed, 1104 insertions(+), 483 deletions(-)
Title: Knowledge Graphs Constructions and Visualizations
Description: Knowledge graphs enable to efficiently visualize and gain insights into large-scale data analysis results, as p-values from multiple studies or embedding data matrices. The usual workflow is a user providing a data frame of association studies results and specifying target nodes, e.g. phenotypes, to visualize. The knowledge graph then shows all the features which are significantly associated with the phenotype, with the edges being proportional to the association scores. As the user adds several target nodes and grouping information about the nodes such as biological pathways, the construction of such graphs soon becomes complex. The 'kgraph' package aims to enable users to easily build such knowledge graphs, and provides two main features: first, to enable building a knowledge graph based on a data frame of concepts relationships, be it p-values or cosine similarities; second, to enable determining an appropriate cut-off on cosine similarities from a complete embedding matrix, to enab [...truncated...]
Author: Thomas Charlon [aut, cre] ,
Hongyi Yuan [ctb] ,
CELEHS [aut] ,
PARSE Health [aut]
Maintainer: Thomas Charlon <charlon@protonmail.com>
Diff between kgraph versions 1.0.0 dated 2024-09-20 and 1.0.1 dated 2025-02-01
kgraph-1.0.0/kgraph/inst/extdata |only kgraph-1.0.0/kgraph/inst/scripts |only kgraph-1.0.1/kgraph/DESCRIPTION | 8 ++--- kgraph-1.0.1/kgraph/MD5 | 37 +++++++++++---------------- kgraph-1.0.1/kgraph/R/df_cuis_pairs.R | 5 ++- kgraph-1.0.1/kgraph/R/df_embeds_dict.R | 2 + kgraph-1.0.1/kgraph/R/df_pval.R | 2 + kgraph-1.0.1/kgraph/R/df_pval_dict.R | 2 + kgraph-1.0.1/kgraph/R/m_embeds.R | 2 + kgraph-1.0.1/kgraph/R/sparse_encodes.R | 4 -- kgraph-1.0.1/kgraph/R/svd_pmi.R | 30 +++++++++++++++++++-- kgraph-1.0.1/kgraph/inst/doc/kgraph.Rmd | 15 ++++++++++ kgraph-1.0.1/kgraph/inst/doc/kgraph.html | 41 ++++++++++++++++++------------ kgraph-1.0.1/kgraph/man/df_cuis_pairs.Rd | 5 ++- kgraph-1.0.1/kgraph/man/df_embeds_dict.Rd | 2 + kgraph-1.0.1/kgraph/man/df_pval.Rd | 2 + kgraph-1.0.1/kgraph/man/df_pval_dict.Rd | 2 + kgraph-1.0.1/kgraph/man/m_embeds.Rd | 2 + kgraph-1.0.1/kgraph/vignettes/kgraph.Rmd | 15 ++++++++++ 19 files changed, 123 insertions(+), 53 deletions(-)
Title: Advanced Toolset for Efficient Time Series Dissimilarity
Analysis
Description: Fast C++ implementation of Dynamic Time Warping for time series dissimilarity analysis, with applications in environmental monitoring and sensor data analysis, climate science, signal processing and pattern recognition, and financial data analysis. Built upon the ideas presented in Benito and Birks (2020) <doi:10.1111/ecog.04895>, provides tools for analyzing time series of varying lengths and structures, including irregular multivariate time series. Key features include individual variable contribution analysis, restricted permutation tests for statistical significance, and imputation of missing data via GAMs. Additionally, the package provides an ample set of tools to prepare and manage time series data.
Author: Blas M. Benito [aut, cre, cph]
Maintainer: Blas M. Benito <blasbenito@gmail.com>
Diff between distantia versions 2.0.1 dated 2025-01-23 and 2.0.2 dated 2025-02-01
DESCRIPTION | 6 +- MD5 | 14 ++--- NEWS.md | 4 + R/zoo_plot.R | 13 +--- README.md | 96 +++++++++++++++++------------------ inst/CITATION | 2 man/zoo_plot.Rd | 3 + tests/testthat/test-utils_new_time.R | 9 ++- 8 files changed, 77 insertions(+), 70 deletions(-)
Title: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis
Tests
Description: Compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 100 classes of statistical and machine learning models in R. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference. Details can be found in Arel-Bundock, Greifer, and Heiss (2024) <doi:10.18637/jss.v111.i09>.
Author: Vincent Arel-Bundock [aut, cre, cph]
,
Noah Greifer [ctb] ,
Etienne Bacher [ctb] ,
Grant McDermott [ctb] ,
Andrew Heiss [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.24.0 dated 2024-11-25 and 0.25.0 dated 2025-02-01
marginaleffects-0.24.0/marginaleffects/R/deprecated.R |only marginaleffects-0.24.0/marginaleffects/R/get_hypothesis.R |only marginaleffects-0.24.0/marginaleffects/R/get_term_labels.R |only marginaleffects-0.24.0/marginaleffects/R/hypothesis_helper.R |only marginaleffects-0.24.0/marginaleffects/man/datagridcf.Rd |only marginaleffects-0.24.0/marginaleffects/man/deltamethod.Rd |only marginaleffects-0.24.0/marginaleffects/man/marginal_means.Rd |only marginaleffects-0.24.0/marginaleffects/man/marginaleffects.Rd |only marginaleffects-0.24.0/marginaleffects/man/marginalmeans.Rd |only marginaleffects-0.24.0/marginaleffects/man/meffects.Rd |only marginaleffects-0.25.0/marginaleffects/DESCRIPTION | 62 +- marginaleffects-0.25.0/marginaleffects/MD5 | 145 +++--- marginaleffects-0.25.0/marginaleffects/NAMESPACE | 23 - marginaleffects-0.25.0/marginaleffects/NEWS.md | 83 ++- marginaleffects-0.25.0/marginaleffects/R/bootstrap_boot.R | 24 - marginaleffects-0.25.0/marginaleffects/R/broom.R | 15 marginaleffects-0.25.0/marginaleffects/R/ci.R | 12 marginaleffects-0.25.0/marginaleffects/R/comparisons.R | 46 -- marginaleffects-0.25.0/marginaleffects/R/conformal.R | 2 marginaleffects-0.25.0/marginaleffects/R/datagrid.R | 28 - marginaleffects-0.25.0/marginaleffects/R/get_coef.R | 14 marginaleffects-0.25.0/marginaleffects/R/get_contrasts.R | 20 marginaleffects-0.25.0/marginaleffects/R/get_dataset.R |only marginaleffects-0.25.0/marginaleffects/R/get_draws.R | 15 marginaleffects-0.25.0/marginaleffects/R/get_labels.R |only marginaleffects-0.25.0/marginaleffects/R/get_model_matrix_attribute.R | 2 marginaleffects-0.25.0/marginaleffects/R/get_modeldata.R | 14 marginaleffects-0.25.0/marginaleffects/R/get_se_delta.R | 15 marginaleffects-0.25.0/marginaleffects/R/get_vcov.R | 29 + marginaleffects-0.25.0/marginaleffects/R/hypotheses.R | 129 ++--- marginaleffects-0.25.0/marginaleffects/R/hypotheses_joint.R | 5 marginaleffects-0.25.0/marginaleffects/R/hypothesis.R |only marginaleffects-0.25.0/marginaleffects/R/hypothesis_formula.R |only marginaleffects-0.25.0/marginaleffects/R/hypothesis_function.R |only marginaleffects-0.25.0/marginaleffects/R/hypothesis_matrix.R |only marginaleffects-0.25.0/marginaleffects/R/hypothesis_string.R |only marginaleffects-0.25.0/marginaleffects/R/matrix_apply.R |only marginaleffects-0.25.0/marginaleffects/R/methods.R | 30 - marginaleffects-0.25.0/marginaleffects/R/methods_MCMCglmm.R | 4 marginaleffects-0.25.0/marginaleffects/R/methods_gamlss.R | 2 marginaleffects-0.25.0/marginaleffects/R/methods_glmmTMB.R | 143 +++--- marginaleffects-0.25.0/marginaleffects/R/methods_lme4.R | 35 - marginaleffects-0.25.0/marginaleffects/R/methods_mclogit.R | 16 marginaleffects-0.25.0/marginaleffects/R/methods_quantreg.R | 2 marginaleffects-0.25.0/marginaleffects/R/methods_rstpm2.R | 2 marginaleffects-0.25.0/marginaleffects/R/multcomp.R |only marginaleffects-0.25.0/marginaleffects/R/package.R | 8 marginaleffects-0.25.0/marginaleffects/R/plot_build.R | 12 marginaleffects-0.25.0/marginaleffects/R/plot_comparisons.R | 28 - marginaleffects-0.25.0/marginaleffects/R/plot_predictions.R | 30 + marginaleffects-0.25.0/marginaleffects/R/plot_slopes.R | 15 marginaleffects-0.25.0/marginaleffects/R/predictions.R | 55 -- marginaleffects-0.25.0/marginaleffects/R/print.R | 168 +++---- marginaleffects-0.25.0/marginaleffects/R/recall.R | 19 marginaleffects-0.25.0/marginaleffects/R/sanitize_hypothesis.R | 12 marginaleffects-0.25.0/marginaleffects/R/sanitize_hypothesis_formula.R | 62 ++ marginaleffects-0.25.0/marginaleffects/R/sanitize_newdata.R | 157 ++---- marginaleffects-0.25.0/marginaleffects/R/sanitize_variables.R | 11 marginaleffects-0.25.0/marginaleffects/R/sanity.R | 7 marginaleffects-0.25.0/marginaleffects/R/sanity_dots.R | 32 - marginaleffects-0.25.0/marginaleffects/R/slopes.R | 82 +-- marginaleffects-0.25.0/marginaleffects/R/sort.R | 10 marginaleffects-0.25.0/marginaleffects/R/type_dictionary.R | 6 marginaleffects-0.25.0/marginaleffects/R/unpack_matrix_cols.R | 14 marginaleffects-0.25.0/marginaleffects/R/utils.R | 17 marginaleffects-0.25.0/marginaleffects/README.md | 3 marginaleffects-0.25.0/marginaleffects/build/vignette.rds |only marginaleffects-0.25.0/marginaleffects/inst/WORDLIST | 229 +++++----- marginaleffects-0.25.0/marginaleffects/inst/doc |only marginaleffects-0.25.0/marginaleffects/man/comparisons.Rd | 87 ++- marginaleffects-0.25.0/marginaleffects/man/get_coef.Rd | 2 marginaleffects-0.25.0/marginaleffects/man/get_dataset.Rd |only marginaleffects-0.25.0/marginaleffects/man/get_draws.Rd | 3 marginaleffects-0.25.0/marginaleffects/man/get_vcov.Rd | 2 marginaleffects-0.25.0/marginaleffects/man/hypotheses.Rd | 69 +-- marginaleffects-0.25.0/marginaleffects/man/knit_print.marginaleffects.Rd | 2 marginaleffects-0.25.0/marginaleffects/man/plot_comparisons.Rd | 12 marginaleffects-0.25.0/marginaleffects/man/plot_predictions.Rd | 11 marginaleffects-0.25.0/marginaleffects/man/plot_slopes.Rd | 11 marginaleffects-0.25.0/marginaleffects/man/posterior_draws.Rd | 4 marginaleffects-0.25.0/marginaleffects/man/predictions.Rd | 84 ++- marginaleffects-0.25.0/marginaleffects/man/print.marginaleffects.Rd | 2 marginaleffects-0.25.0/marginaleffects/man/slopes.Rd | 85 ++- marginaleffects-0.25.0/marginaleffects/vignettes |only 84 files changed, 1175 insertions(+), 1093 deletions(-)
More information about marginaleffects at CRAN
Permanent link
Title: Spatial Empirical Dynamic Modeling
Description: Inferring causal associations in cross-sectional earth system data with extensions to convergent cross mapping from Sugihara et al. (2012) <doi:10.1126/science.1227079> and partial cross mapping as described in Ma et al. (2020) <doi:10.1038/s41467-020-16238-0>.
Author: Wenbo Lv [aut, cre, cph]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between spEDM versions 1.2 dated 2025-01-14 and 1.3 dated 2025-02-01
spEDM-1.2/spEDM/R/ccm_formatoutput.R |only spEDM-1.2/spEDM/R/variable_check.R |only spEDM-1.3/spEDM/DESCRIPTION | 14 spEDM-1.3/spEDM/MD5 | 89 +++-- spEDM-1.3/spEDM/NAMESPACE | 6 spEDM-1.3/spEDM/NEWS.md | 28 + spEDM-1.3/spEDM/R/RcppExports.R | 116 ++++++- spEDM-1.3/spEDM/R/detectThreads.R |only spEDM-1.3/spEDM/R/embedded.R |only spEDM-1.3/spEDM/R/formatoutput_s3.R |only spEDM-1.3/spEDM/R/gccm.R | 67 ++-- spEDM-1.3/spEDM/R/globals.R | 2 spEDM-1.3/spEDM/R/scpcm.R |only spEDM-1.3/spEDM/R/simplex.R |only spEDM-1.3/spEDM/R/smap.R |only spEDM-1.3/spEDM/R/variable_check_prepare.R |only spEDM-1.3/spEDM/R/xmapdf.R | 42 ++ spEDM-1.3/spEDM/inst/doc/GCCM.Rmd | 203 ++++++++---- spEDM-1.3/spEDM/inst/doc/GCCM.html | 306 +++++++++++------- spEDM-1.3/spEDM/man/detectThreads.Rd |only spEDM-1.3/spEDM/man/embedded.Rd |only spEDM-1.3/spEDM/man/figures/gccm/fig1-1.png |binary spEDM-1.3/spEDM/man/figures/gccm/fig3-1.png |binary spEDM-1.3/spEDM/man/gccm.Rd | 35 +- spEDM-1.3/spEDM/man/simplex.Rd |only spEDM-1.3/spEDM/man/smap.Rd |only spEDM-1.3/spEDM/src/CppGridUtils.cpp | 137 ++++++-- spEDM-1.3/spEDM/src/CppGridUtils.h | 26 + spEDM-1.3/spEDM/src/CppLatticeUtils.cpp | 191 +++++++---- spEDM-1.3/spEDM/src/CppLatticeUtils.h | 12 spEDM-1.3/spEDM/src/CppStats.cpp | 459 +++++++++++++++++++++++++--- spEDM-1.3/spEDM/src/CppStats.h | 37 ++ spEDM-1.3/spEDM/src/Forecast4Grid.cpp |only spEDM-1.3/spEDM/src/Forecast4Grid.h |only spEDM-1.3/spEDM/src/Forecast4Lattice.cpp |only spEDM-1.3/spEDM/src/Forecast4Lattice.h |only spEDM-1.3/spEDM/src/GCCM4Grid.cpp | 107 +++++- spEDM-1.3/spEDM/src/GCCM4Grid.h | 12 spEDM-1.3/spEDM/src/GCCM4Lattice.cpp | 75 ++-- spEDM-1.3/spEDM/src/GCCM4Lattice.h | 22 - spEDM-1.3/spEDM/src/GridExp.cpp | 278 ++++++++++++++++ spEDM-1.3/spEDM/src/HelperFuns.cpp |only spEDM-1.3/spEDM/src/HelperFuns.h |only spEDM-1.3/spEDM/src/LatticeExp.cpp | 303 ++++++++++++++++-- spEDM-1.3/spEDM/src/Makevars | 6 spEDM-1.3/spEDM/src/Makevars.win | 6 spEDM-1.3/spEDM/src/RcppExports.cpp | 433 ++++++++++++++++++++++++-- spEDM-1.3/spEDM/src/SCPCM4Grid.cpp |only spEDM-1.3/spEDM/src/SCPCM4Grid.h |only spEDM-1.3/spEDM/src/SCPCM4Lattice.cpp |only spEDM-1.3/spEDM/src/SCPCM4Lattice.h |only spEDM-1.3/spEDM/src/SMap.cpp |only spEDM-1.3/spEDM/src/SMap.h |only spEDM-1.3/spEDM/src/SimplexProjection.cpp | 83 ++++- spEDM-1.3/spEDM/src/SimplexProjection.h | 34 +- spEDM-1.3/spEDM/src/StatsExp.cpp |only spEDM-1.3/spEDM/src/spEDMDataStruct.h |only spEDM-1.3/spEDM/vignettes/GCCM.Rmd | 203 ++++++++---- spEDM-1.3/spEDM/vignettes/GCCM.Rmd.orig | 51 ++- 59 files changed, 2733 insertions(+), 650 deletions(-)
Title: R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also
see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Author: Dirk Eddelbuettel [aut, cre] ,
Gabi Melman [aut] ,
Victor Zverovic [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.19 dated 2024-11-11 and 0.0.20 dated 2025-02-01
ChangeLog | 11 DESCRIPTION | 8 MD5 | 69 build/partial.rdb |binary inst/NEWS.Rd | 7 inst/examples/exampleFour.cpp |only inst/include/spdlog/cfg/env.h | 4 inst/include/spdlog/common.h | 7 inst/include/spdlog/details/file_helper-inl.h | 3 inst/include/spdlog/details/os-inl.h | 12 inst/include/spdlog/details/os.h | 4 inst/include/spdlog/fmt/bin_to_hex.h | 2 inst/include/spdlog/fmt/bundled/args.h | 48 inst/include/spdlog/fmt/bundled/base.h | 3316 ++++++++++----------- inst/include/spdlog/fmt/bundled/chrono.h | 846 ++--- inst/include/spdlog/fmt/bundled/color.h | 42 inst/include/spdlog/fmt/bundled/compile.h | 70 inst/include/spdlog/fmt/bundled/format-inl.h | 109 inst/include/spdlog/fmt/bundled/format.h | 2373 ++++++--------- inst/include/spdlog/fmt/bundled/os.h | 98 inst/include/spdlog/fmt/bundled/ostream.h | 131 inst/include/spdlog/fmt/bundled/printf.h | 237 - inst/include/spdlog/fmt/bundled/ranges.h | 228 - inst/include/spdlog/fmt/bundled/std.h | 121 inst/include/spdlog/fmt/bundled/xchar.h | 143 inst/include/spdlog/sinks/ansicolor_sink-inl.h | 18 inst/include/spdlog/sinks/ansicolor_sink.h | 7 inst/include/spdlog/sinks/basic_file_sink-inl.h | 6 inst/include/spdlog/sinks/basic_file_sink.h | 1 inst/include/spdlog/sinks/daily_file_sink.h | 1 inst/include/spdlog/sinks/null_sink.h | 2 inst/include/spdlog/sinks/rotating_file_sink-inl.h | 6 inst/include/spdlog/sinks/rotating_file_sink.h | 1 inst/include/spdlog/sinks/stdout_sinks-inl.h | 9 inst/include/spdlog/tweakme.h | 7 inst/include/spdlog/version.h | 2 36 files changed, 3802 insertions(+), 4147 deletions(-)
Title: Superefficient Estimation of Future Conditional Hazards Based on
Marker Information
Description: Provides a nonparametric smoothed kernel estimator for the future conditional hazard rate function when time-dependent covariates are present, a bandwidth selector for the estimator's implementation and pointwise and uniform confidence bands. Methods used in the package refer to Bagkavos, Isakson, Mammen, Nielsen and Proust-Lima (2025) <doi:10.1093/biomet/asaf008>.
Author: Dimitrios Bagkavos [aut, cre],
Alex Isakson [ctb],
Enno Mammen [ctb],
Jens Nielsen [ctb],
Cecile Proust-Lima [ctb]
Maintainer: Dimitrios Bagkavos <dimitrios.bagkavos@gmail.com>
Diff between HQM versions 0.1.4 dated 2024-12-12 and 1.0 dated 2025-02-01
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom', 'iPro 2', 'Diasend', 'Libre', or 'Carelink' data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload. cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <timothy.vigers@cuanschutz.edu>
Diff between cgmanalysis versions 3.0 dated 2025-01-30 and 3.0.1 dated 2025-02-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/cgmvariables.R | 17 ++++++++++++++++- 3 files changed, 21 insertions(+), 6 deletions(-)
Title: Wrapper for the 'CVD Prevent' Application Programming Interface
Description: Provides an R wrapper to the 'CVD Prevent' application
programming interface (API). Users can make API requests through
built-in R functions. The Cardiovascular Disease Prevention Audit
(CVDPREVENT) is an England-wide primary care audit that automatically
extracts routinely held GP health data.
<https://bmchealthdocs.atlassian.net/wiki/spaces/CP/pages/317882369/CVDPREVENT+API+Documentation>.
Author: Craig Parylo [aut, cre, cph] ,
Cardiovascular Disease Prevention Audit [ant]
Maintainer: Craig Parylo <craig.parylo2@nhs.net>
Diff between cvdprevent versions 0.2.0 dated 2024-10-16 and 0.2.1 dated 2025-02-01
DESCRIPTION | 7 MD5 | 20 NEWS.md | 2 R/cvd_api_functions.R | 4112 +-- README.md | 128 build/vignette.rds |binary inst/doc/using_cvdprevent.R | 608 inst/doc/using_cvdprevent.Rmd | 1196 - inst/doc/using_cvdprevent.html |33327 ++++++++++++++++---------------- tests/testthat/test-cvd_api_functions.R | 496 vignettes/using_cvdprevent.Rmd | 1196 - 11 files changed, 20665 insertions(+), 20427 deletions(-)
Title: Classes and Methods for Spatial Data
Description: Classes and methods for spatial
data; the classes document where the spatial location information
resides, for 2D or 3D data. Utility functions are provided, e.g. for
plotting data as maps, spatial selection, as well as methods for
retrieving coordinates, for subsetting, print, summary, etc. From this
version, 'rgdal', 'maptools', and 'rgeos' are no longer used at all,
see <https://r-spatial.org/r/2023/05/15/evolution4.html> for details.
Author: Edzer Pebesma [aut, cre],
Roger Bivand [aut],
Barry Rowlingson [ctb],
Virgilio Gomez-Rubio [ctb],
Robert Hijmans [ctb],
Michael Sumner [ctb],
Don MacQueen [ctb],
Jim Lemon [ctb],
Finn Lindgren [ctb],
Josh O'Brien [ctb],
Joseph O'Rourke [ctb],
Patrick [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sp versions 2.1-4 dated 2024-04-30 and 2.2-0 dated 2025-02-01
sp-2.1-4/sp/demo/webmap.R |only sp-2.1-4/sp/inst/include |only sp-2.2-0/sp/DESCRIPTION | 10 sp-2.2-0/sp/MD5 | 59 ++-- sp-2.2-0/sp/build/vignette.rds |binary sp-2.2-0/sp/demo/00Index | 1 sp-2.2-0/sp/inst/NEWS.Rd | 11 sp-2.2-0/sp/inst/doc/CRS_warnings.html | 204 ++++++++-------- sp-2.2-0/sp/inst/doc/csdacm.R | 31 +- sp-2.2-0/sp/inst/doc/csdacm.Rnw | 5 sp-2.2-0/sp/inst/doc/csdacm.pdf |binary sp-2.2-0/sp/inst/doc/intro_sp.pdf |binary sp-2.2-0/sp/inst/doc/retiring_rgdal_geos_1.html | 295 ++++++++++++++---------- sp-2.2-0/sp/inst/doc/sp_gallery.R |only sp-2.2-0/sp/inst/doc/sp_gallery.Rmd |only sp-2.2-0/sp/inst/doc/sp_gallery.html |only sp-2.2-0/sp/man/GridsDatums.Rd | 4 sp-2.2-0/sp/man/bubble.Rd | 4 sp-2.2-0/sp/man/image.Rd | 2 sp-2.2-0/sp/man/mapasp.Rd | 2 sp-2.2-0/sp/man/spplot.Rd | 12 sp-2.2-0/sp/man/stack.Rd | 2 sp-2.2-0/sp/src/gcdist.c | 2 sp-2.2-0/sp/src/init.c | 2 sp-2.2-0/sp/src/pip.c | 8 sp-2.2-0/sp/src/pip2.c | 22 - sp-2.2-0/sp/src/sp.h | 62 ++--- sp-2.2-0/sp/src/sp_xports.c | 234 +++++++++---------- sp-2.2-0/sp/src/zerodist.c | 10 sp-2.2-0/sp/tests/grid.R | 6 sp-2.2-0/sp/tests/grid.Rout.save | 75 ------ sp-2.2-0/sp/vignettes/csdacm.Rnw | 5 sp-2.2-0/sp/vignettes/sp_gallery.Rmd |only 33 files changed, 549 insertions(+), 519 deletions(-)
Title: Remote Sensing Data Analysis
Description: Toolbox for remote sensing image processing and analysis such as
calculating spectral indexes, principal component transformation, unsupervised
and supervised classification or fractional cover analyses.
Author: Benjamin Leutner [aut] ,
Ned Horning [aut],
Jakob Schwalb-Willmann [aut] ,
Robert J. Hijmans [ctb] ,
Konstantin Mueller [aut, cre]
Maintainer: Konstantin Mueller <konstantinfinn.mueller@gmx.de>
Diff between RStoolbox versions 1.0.0 dated 2024-04-25 and 1.0.1 dated 2025-02-01
DESCRIPTION | 13 MD5 | 235 +- NAMESPACE | 228 +- NEWS.md | 553 ++--- R/RStoolbox-package.R | 274 +- R/RcppExports.R | 110 - R/classifyQA.R | 216 - R/cloudMask.R | 308 +- R/coregisterImages.R | 416 +-- R/encodeQA.R | 196 - R/estimateHaze.R | 268 +- R/fCover.R | 456 ++-- R/fortify-raster.R | 32 R/getMeta.R | 180 - R/getValidation.R | 144 - R/ggR.R | 392 +-- R/ggRGB.R | 470 ++-- R/histMatch.R | 280 +- R/internalFunctions.R | 895 ++++---- R/mesma.R | 355 +-- R/mlc.R | 166 - R/normImage.R | 102 R/oneHotEncode.R | 88 R/panSharpen.R | 188 - R/pifMatch.R | 238 +- R/radCor.R | 576 ++--- R/rasterCVA.R | 210 - R/rasterEntropy.R | 50 R/rasterPCA.R | 174 - R/readEE.R | 108 R/readMeta.R | 694 +++--- R/readSLI.R | 334 +-- R/rescaleImage.R | 212 - R/rsOpts.R | 38 R/sam.R | 126 - R/saveRSTBX.R | 178 - R/spectralIndices.R | 508 ++-- R/stackMeta.R | 204 - R/superClass.R | 1091 +++++----- R/tasseledCap.R | 138 - R/topCor.R | 512 ++-- R/unsuperClass.R | 358 +-- R/utils-pipe.R | 28 R/validateMap.R | 166 - R/zzz.R | 38 README.md | 460 ++-- inst/CITATION |only inst/external/EarthExplorer_LS8.txt | 106 inst/external/vegSpec.sli.hdr | 44 man/RStoolbox.Rd | 1 man/fortifySpatRaster.Rd | 46 man/lsat.Rd | 34 man/mesma.Rd | 4 man/pipe.Rd | 40 man/rlogo.Rd | 32 man/rsOpts.Rd | 6 man/sen2.Rd | 32 man/spectralIndices.Rd | 40 man/srtm.Rd | 32 man/srtm_sen2.Rd | 32 man/superClass.Rd | 1 src/RcppExports.cpp | 7 src/init.c | 4 src/spectralIndices.cpp | 86 src/tinyexpr.c |only src/tinyexpr.h |only tests/testthat.R | 12 tests/testthat/helper-testUtils.R | 34 tests/testthat/test-classifyQA.R | 56 tests/testthat/test-cloudMask.R | 30 tests/testthat/test-coregisterImages.R | 22 tests/testthat/test-encodeQA.R | 202 - tests/testthat/test-entropy.R | 32 tests/testthat/test-estimateHaze.R | 54 tests/testthat/test-fCover.R | 70 tests/testthat/test-gainOffsetRescale.R | 38 tests/testthat/test-getMeta.R | 52 tests/testthat/test-getValidation.R | 46 tests/testthat/test-ggplot.R | 188 - tests/testthat/test-histMatch.R | 24 tests/testthat/test-internalFunctions.R | 28 tests/testthat/test-mesma.R | 146 - tests/testthat/test-mlc.R | 50 tests/testthat/test-multicore.R | 78 tests/testthat/test-normImage.R | 92 tests/testthat/test-oneHotEncode.R | 52 tests/testthat/test-panSharpen.R | 34 tests/testthat/test-pifMatch.R | 38 tests/testthat/test-radCor.R | 146 - tests/testthat/test-rasterCVA.R | 58 tests/testthat/test-rasterPCA.R | 60 tests/testthat/test-readEE.R | 26 tests/testthat/test-readMeta.R | 24 tests/testthat/test-rescaleImage.R | 68 tests/testthat/test-rsOpts.R | 22 tests/testthat/test-sam.R | 70 tests/testthat/test-saveReadRSTBX.R | 34 tests/testthat/test-sli.R | 78 tests/testthat/test-spectralIndices.R | 161 - tests/testthat/test-stackMeta.R | 16 tests/testthat/test-superClass.R | 330 +-- tests/testthat/test-tasseledCap.R | 22 tests/testthat/test-topCor.R | 48 tests/testthat/test-unsuperClass.R | 152 - tests/testthat/test-validateMap.R | 74 tests/testthat/testdata/earthexplorer/EE_LANDSAT_5.txt | 202 - tests/testthat/testdata/earthexplorer/EE_LANDSAT_7.txt | 202 - tests/testthat/testdata/earthexplorer/EE_LANDSAT_8.txt | 168 - tests/testthat/testdata/earthexplorer/EE_LANDSAT_NEWFORMAT.csv | 6 tests/testthat/testdata/metadata/LC08_L1TP_193024_20180824_20200831_02_T1_MTL.txt | 568 ++--- tests/testthat/testdata/metadata/LC80980762015235LGN00.xml | 348 +-- tests/testthat/testdata/metadata/LE07_L1TP_160031_20110416_20161210_01_T1.xml | 452 ++-- tests/testthat/testdata/metadata/LE07_L1TP_160031_20110416_20161210_01_T1_MTL.TXT | 482 ++-- tests/testthat/testdata/metadata/LT05_L1TP_047027_20101006_20160512_01_T1_MTL.txt | 386 +-- tests/testthat/testdata/metadata/LT05_L1TP_218072_20100801_20161015_01_T1_MTL.txt | 388 +-- tests/testthat/testdata/metadata/mss_MTL.txt | 284 +- tests/testthat/testdata/sli/a.sli.hdr | 46 tests/testthat/testdata/sli/b.sli.hdr | 44 tests/testthat/testdata/sli/c.sli.hdr | 42 tests/testthat/testdata/sli/d.sli.hdr | 44 120 files changed, 10067 insertions(+), 9915 deletions(-)
Title: Create 'shiny' Applications for Cox Proportional Hazards Models
Description: Takes one or more fitted Cox proportional hazards models and writes
a 'shiny' application to a directory specified by the user. The 'shiny'
application displays predicted survival curves based on user input, and
contains none of the original data used to create the Cox model or models.
The goal is towards visualization and presentation of predicted survival
curves.
Author: Harrison Clement [aut, cre],
Subodh Selukar [aut],
Stanley Pounds [aut],
St Jude Children's Research Hospital [fnd]
Maintainer: Harrison Clement <harrisonclement16@gmail.com>
Diff between shinyCox versions 1.1.2 dated 2024-12-08 and 1.1.3 dated 2025-01-31
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/cox_predictions.R | 2 +- R/misc_functions.R | 2 +- R/shinybuilder.R | 2 +- 6 files changed, 15 insertions(+), 11 deletions(-)
Title: Compute and Plot Zonohedra from Vector Generators
Description: Computes a zonohedron from real vector generators. The package also computes zonogons (2D zonotopes) and zonosegs (1D zonotopes). An elementary S3 class for matroids is included, which supports matroids with rank 3, 2, and 1. Optimization methods are taken from Heckbert (1985) <https://www.cs.cmu.edu/~ph/zono.ps.gz>.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between zonohedra versions 0.3-0 dated 2024-07-09 and 0.4-0 dated 2025-01-31
DESCRIPTION | 8 MD5 | 48 - NEWS.md | 9 R/matroid.R | 58 + R/nearequal.R | 18 R/trans2.R | 34 - R/utils.R | 27 R/zonohedron.R | 178 ++++- R/zonoseg.R | 5 R/zonotope.R | 44 + build/vignette.rds |binary inst/doc/matroids.html | 360 ++++++++--- inst/doc/raytrace.R | 12 inst/doc/raytrace.Rmd | 12 inst/doc/raytrace.html | 300 +++++---- inst/doc/transitions.R | 4 inst/doc/transitions.Rmd | 24 inst/doc/transitions.html | 1285 +++++++++++++++++++++++++++++++----------- inst/doc/zonohedra-guide.html | 521 ++++++++++------- inst/doc/zonotopes.html | 686 +++++++++++++++------- man/boundarypgramdata.Rd | 63 +- man/inside.Rd | 13 src/matroid.c | 17 vignettes/raytrace.Rmd | 12 vignettes/transitions.Rmd | 24 25 files changed, 2643 insertions(+), 1119 deletions(-)
Title: Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Description: Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects. This packaged is described by
Collyer & Adams (2018). Additionally, coefficients, statistics, fitted values, and residuals generated over many
permutations can be used for various procedures including pairwise tests, prediction, classification, and
model comparison. This package should provide most tools one could need for the analysis of
high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.
Author: Michael Collyer [aut, cre] ,
Dean Adams [aut]
Maintainer: Michael Collyer <mlcollyer@gmail.com>
Diff between RRPP versions 2.0.4 dated 2024-11-13 and 2.1.0 dated 2025-01-31
DESCRIPTION | 6 MD5 | 53 ++++--- NAMESPACE | 19 ++ NEWS.md | 7 R/RRPP.support.code.r | 9 + R/RRPP.utils.r | 287 ++++++++++++++++++++++++++++++++++++++-- R/add.tree.r | 4 R/betaTest.r |only R/coef.lm.rrpp.r | 75 +++++++--- R/kcomp.r |only R/logLik.lm.rrpp.r | 7 R/model.comparison.r | 35 +++- R/pairwise.model.Z.r |only R/pairwise.r | 14 + build/vignette.rds |binary inst/doc/ANOVA.vs.MANOVA.html | 4 inst/doc/Using.RRPP.R | 2 inst/doc/Using.RRPP.html | 52 ++++--- man/betaTest.Rd |only man/coef.lm.rrpp.Rd | 29 +++- man/kcomp.Rd |only man/logLik.lm.rrpp.Rd | 13 + man/model.comparison.Rd | 13 + man/pairwise.Rd | 14 + man/pairwise.model.Z.Rd |only man/plot.kcomp.Rd |only man/print.betaTest.Rd |only man/print.kcomp.Rd |only man/print.pairwise.model.Z.Rd |only man/summary.betaTest.Rd |only man/summary.kcomp.Rd |only man/summary.pairwise.Rd | 16 +- man/summary.pairwise.model.Z.Rd |only tests/testthat/test-RRPP.R | 165 ++++++++++++++++++++++ 34 files changed, 717 insertions(+), 107 deletions(-)
Title: Tools for Assessing Clustering
Description: A set of tools for evaluating clustering robustness using
proportion of ambiguously clustered pairs (Senbabaoglu et al. (2014)
<doi:10.1038/srep06207>), as well as similarity across methods
and method stability using element-centric clustering comparison (Gates et
al. (2019) <doi:10.1038/s41598-019-44892-y>). Additionally, this package
enables stability-based parameter assessment for graph-based clustering
pipelines typical in single-cell data analysis.
Author: Andi Munteanu [aut, cre],
Arash Shahsavari [aut],
Rafael Kollyfas [ctb],
Miguel Larraz Lopez de Novales [aut],
Liviu Ciortuz [ctb],
Irina Mohorianu [aut]
Maintainer: Andi Munteanu <am3019@cam.ac.uk>
Diff between ClustAssess versions 0.3.0 dated 2022-01-26 and 1.0.0 dated 2025-01-31
ClustAssess-0.3.0/ClustAssess/R/utils-pipe.R |only ClustAssess-0.3.0/ClustAssess/build |only ClustAssess-0.3.0/ClustAssess/inst/doc |only ClustAssess-0.3.0/ClustAssess/man/figures |only ClustAssess-0.3.0/ClustAssess/man/get_clustering_difference.Rd |only ClustAssess-0.3.0/ClustAssess/man/get_feature_stability.Rd |only ClustAssess-0.3.0/ClustAssess/man/get_nn_importance.Rd |only ClustAssess-0.3.0/ClustAssess/man/get_resolution_importance.Rd |only ClustAssess-0.3.0/ClustAssess/man/pipe.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_clustering_difference_boxplot.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_feature_stability_boxplot.Rd |only ClustAssess-0.3.0/ClustAssess/man/plot_feature_stability_ecs_incremental.Rd |only ClustAssess-0.3.0/ClustAssess/vignettes |only ClustAssess-1.0.0/ClustAssess/DESCRIPTION | 54 ClustAssess-1.0.0/ClustAssess/MD5 | 138 ClustAssess-1.0.0/ClustAssess/NAMESPACE | 53 ClustAssess-1.0.0/ClustAssess/R/ECS.R | 2883 +++++---- 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Title: Tools for Accessing the Botanical Information and Ecology
Network Database
Description: Provides Tools for Accessing the Botanical Information and Ecology Network Database. The BIEN database contains cleaned and standardized botanical data including occurrence, trait, plot and taxonomic data (See <https://bien.nceas.ucsb.edu/bien/> for more Information). This package provides functions that query the BIEN database by constructing and executing optimized SQL queries.
Author: Brian Maitner [aut, cre]
Maintainer: Brian Maitner <bmaitner@gmail.com>
Diff between BIEN versions 1.2.6 dated 2023-01-06 and 1.2.7 dated 2025-01-31
DESCRIPTION | 14 MD5 | 87 - NAMESPACE | 4 NEWS | 20 R/BIEN.R | 249 ++- R/BIEN_info.R | 3 R/BIEN_sql.R | 117 + README.md | 4 build/vignette.rds |binary inst/doc/BIEN.Rmd | 37 inst/doc/BIEN.html | 252 ++- inst/doc/BIEN_tutorial.R | 256 +-- inst/doc/BIEN_tutorial.Rmd | 20 inst/doc/BIEN_tutorial.html | 1376 ++++++++++++-------- man/BIEN.Rd | 4 man/BIEN_metadata_citation.Rd | 1 man/BIEN_metadata_data_dictionaries.Rd |only man/BIEN_metadata_database_version.Rd | 1 man/BIEN_metadata_list_political_names.Rd | 1 man/BIEN_metadata_match_data.Rd | 1 man/BIEN_occurrence_country.Rd | 3 man/BIEN_occurrence_family.Rd | 3 man/BIEN_plot_metadata.Rd | 1 man/BIEN_ranges_box.Rd | 4 man/BIEN_ranges_genus.Rd | 4 man/BIEN_ranges_intersect_species.Rd | 4 man/BIEN_ranges_list.Rd | 5 man/BIEN_ranges_load_species.Rd | 4 man/BIEN_ranges_sf.Rd | 4 man/BIEN_ranges_shapefile_to_skinny.Rd | 4 man/BIEN_ranges_skinny_ranges_to_richness_raster.Rd | 4 man/BIEN_trait_country.Rd | 4 man/BIEN_trait_family.Rd | 4 man/BIEN_trait_genus.Rd | 4 man/BIEN_trait_list.Rd | 4 man/BIEN_trait_mean.Rd | 4 man/BIEN_trait_species.Rd | 4 man/BIEN_trait_traitbyfamily.Rd | 4 man/BIEN_trait_traitbygenus.Rd | 4 man/BIEN_trait_traitbyspecies.Rd | 4 man/BIEN_trait_traits_per_species.Rd | 4 man/dot-BIEN_sql.Rd | 5 tests/testthat/test-BIEN.r | 6 vignettes/BIEN.Rmd | 37 vignettes/BIEN_tutorial.Rmd | 20 45 files changed, 1605 insertions(+), 990 deletions(-)
Title: A Tidy Framework for Changepoint Detection Analysis
Description: Changepoint detection algorithms for R are widespread but have
different interfaces and reporting conventions.
This makes the comparative analysis of results difficult.
We solve this problem by providing a tidy, unified interface for several
different changepoint detection algorithms.
We also provide consistent numerical and graphical reporting leveraging
the 'broom' and 'ggplot2' packages.
Author: Benjamin S. Baumer [aut, cre, cph]
,
Biviana Marcela Suarez Sierra [aut]
,
Arrigo Coen [aut] ,
Carlos A. Taimal [aut] ,
Xueheng Shi [ctb]
Maintainer: Benjamin S. Baumer <ben.baumer@gmail.com>
Diff between tidychangepoint versions 0.0.1 dated 2024-08-19 and 1.0.0 dated 2025-01-31
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More information about tidychangepoint at CRAN
Permanent link
Title: Prediction Intervals for Synthetic Control Methods with Multiple
Treated Units and Staggered Adoption
Description: Implementation of prediction and inference procedures for Synthetic Control methods using least square, lasso, ridge, or simplex-type constraints. Uncertainty is quantified with prediction intervals as developed in Cattaneo, Feng, and Titiunik (2021) <https://nppackages.github.io/references/Cattaneo-Feng-Titiunik_2021_JASA.pdf> for a single treated unit and in Cattaneo, Feng, Palomba, and Titiunik (2023) <doi:10.48550/arXiv.2210.05026> for multiple treated units and staggered adoption. More details about the software implementation can be found in Cattaneo, Feng, Palomba, and Titiunik (2024) <doi:10.48550/arXiv.2202.05984>.
Author: Matias Cattaneo [aut],
Yingjie Feng [aut],
Filippo Palomba [aut, cre],
Rocio Titiunik [aut]
Maintainer: Filippo Palomba <fpalomba@princeton.edu>
Diff between scpi versions 2.2.6 dated 2024-11-11 and 3.0.0 dated 2025-01-31
DESCRIPTION | 6 - MD5 | 8 - R/scpi.R | 176 +++++++++++++++++-------------------- R/supporting_functions.R | 218 +++++++++++++++-------------------------------- man/scpi.Rd | 24 +---- 5 files changed, 167 insertions(+), 265 deletions(-)
Title: Generate Samples with a Variety of Probability Distributions
Description: Simplifies the process of generating samples from a variety of probability distributions, allowing users to quickly create data frames for demonstrations, troubleshooting, or teaching purposes. Data is available in multiple sizes—small, medium, and large. For more information, refer to the package documentation.
Author: Nicholas Vietto [aut, cre, cph]
Maintainer: Nicholas Vietto <nicholasvietto@gmail.com>
Diff between samplezoo versions 1.1.1 dated 2024-12-02 and 1.2.0 dated 2025-01-31
DESCRIPTION | 6 - MD5 | 15 ++-- NEWS.md | 12 +++ R/distributions.R | 35 +++++---- R/samplezoo.R | 9 +- README.md | 54 ++++++-------- inst/doc/Example.html | 140 +++++++++++++++++++------------------- man/figures/README-pressure-1.png |only man/samplezoo.Rd | 9 +- 9 files changed, 145 insertions(+), 135 deletions(-)
Title: Deal with Dependencies
Description: Manage dependencies during package development. This can
retrieve all dependencies that are used in ".R" files in the "R/"
directory, in ".Rmd" files in "vignettes/" directory and in 'roxygen2'
documentation of functions. There is a function to update the
"DESCRIPTION" file of your package with 'CRAN' packages or any other
remote package. All functions to retrieve dependencies of ".R"
scripts and ".Rmd" or ".qmd" files can be used independently of a
package development.
Author: Vincent Guyader [cre, aut] ,
Sebastien Rochette [aut] ,
Murielle Delmotte [aut] ,
Swann Floc'hlay [aut] ,
ThinkR [cph, fnd]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between attachment versions 0.4.2 dated 2024-07-01 and 0.4.3 dated 2025-01-31
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Title: 'IUCN' Red List Client
Description: 'IUCN' Red List (<https://api.iucnredlist.org/>) client.
The 'IUCN' Red List is a global list of threatened and endangered species.
Functions cover all of the Red List 'API' routes. An 'API' key is required.
Author: William Gearty [aut, cre],
Scott Chamberlain [aut],
rOpenSci [fnd] ,
Maelle Salmon [ctb],
Kevin Cazelles [rev] ,
Stephanie Hazlitt [rev]
Maintainer: William Gearty <willgearty@gmail.com>
Diff between rredlist versions 0.7.1 dated 2022-11-11 and 1.0.0 dated 2025-01-31
rredlist-0.7.1/rredlist/R/rl_common_names.R |only rredlist-0.7.1/rredlist/R/rl_history.R |only rredlist-0.7.1/rredlist/R/rl_measures.R |only rredlist-0.7.1/rredlist/R/rl_narrative.R |only rredlist-0.7.1/rredlist/R/rl_occ_country.R |only rredlist-0.7.1/rredlist/R/rl_regions.R |only rredlist-0.7.1/rredlist/R/rl_search.R |only rredlist-0.7.1/rredlist/R/rl_sp.R |only rredlist-0.7.1/rredlist/R/rl_sp_category.R |only rredlist-0.7.1/rredlist/R/rl_sp_citation.R |only rredlist-0.7.1/rredlist/R/rl_sp_country.R |only rredlist-0.7.1/rredlist/R/rl_synonyms.R |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names-badkey.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names-no-results.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names-not-parsing.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names_-badkey.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_common_names_.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_growth_forms-no-results.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_habitats-not-found.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_habitats_-region-not-found.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_history-by-id.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_history-not-parsing.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_history-region-together.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_history.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_history_.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_measures-no-results.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_measures-not-parsing.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_measures.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_measures_-region-not-found.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_measures_.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_narrative-no-results.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_narrative-not-parsing.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_narrative.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_narrative_.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_search-no-results.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_search-not-parsing.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_search.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_search_-region-not-found.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_search_.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_sp_category-no-results.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_sp_category-not-parsing.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_sp_category.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_sp_category_.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_synonyms-no-results.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_synonyms-not-parsing.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_synonyms.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_synonyms_.yml |only rredlist-0.7.1/rredlist/tests/fixtures/rl_threats-no-results.yml |only rredlist-0.7.1/rredlist/tests/testthat/test-rl_common_names.R |only rredlist-0.7.1/rredlist/tests/testthat/test-rl_habitat.R |only rredlist-0.7.1/rredlist/tests/testthat/test-rl_history.R |only rredlist-0.7.1/rredlist/tests/testthat/test-rl_measures.R |only rredlist-0.7.1/rredlist/tests/testthat/test-rl_narrative.R |only rredlist-0.7.1/rredlist/tests/testthat/test-rl_search.R |only rredlist-0.7.1/rredlist/tests/testthat/test-rl_sp_category.R |only rredlist-0.7.1/rredlist/tests/testthat/test-rl_synonyms.R |only rredlist-1.0.0/rredlist/DESCRIPTION | 36 rredlist-1.0.0/rredlist/LICENSE | 4 rredlist-1.0.0/rredlist/MD5 | 402 +++++++--- rredlist-1.0.0/rredlist/NAMESPACE | 63 + rredlist-1.0.0/rredlist/NEWS.md | 51 - rredlist-1.0.0/rredlist/R/defunct.R |only rredlist-1.0.0/rredlist/R/release.R |only rredlist-1.0.0/rredlist/R/rl_assessment.R |only rredlist-1.0.0/rredlist/R/rl_categories.R |only rredlist-1.0.0/rredlist/R/rl_citation.R | 33 rredlist-1.0.0/rredlist/R/rl_comp_groups.R | 56 - rredlist-1.0.0/rredlist/R/rl_conservation.R |only rredlist-1.0.0/rredlist/R/rl_countries.R | 47 - rredlist-1.0.0/rredlist/R/rl_growth_forms.R | 63 - rredlist-1.0.0/rredlist/R/rl_habitats.R | 113 ++ rredlist-1.0.0/rredlist/R/rl_key.R | 36 rredlist-1.0.0/rredlist/R/rl_realms.R |only rredlist-1.0.0/rredlist/R/rl_sp_count.R | 23 rredlist-1.0.0/rredlist/R/rl_taxa.R |only rredlist-1.0.0/rredlist/R/rl_threats.R | 169 +++- rredlist-1.0.0/rredlist/R/rl_trends.R |only rredlist-1.0.0/rredlist/R/rl_version.R | 32 rredlist-1.0.0/rredlist/R/rredlist-package.R | 43 - rredlist-1.0.0/rredlist/R/zzz.R | 240 ++++- rredlist-1.0.0/rredlist/README.md | 99 ++ rredlist-1.0.0/rredlist/build |only rredlist-1.0.0/rredlist/inst |only rredlist-1.0.0/rredlist/man/figures |only rredlist-1.0.0/rredlist/man/rl_actions.Rd |only rredlist-1.0.0/rredlist/man/rl_api_version.Rd |only rredlist-1.0.0/rredlist/man/rl_assessment.Rd |only rredlist-1.0.0/rredlist/man/rl_categories.Rd |only rredlist-1.0.0/rredlist/man/rl_citation.Rd | 21 rredlist-1.0.0/rredlist/man/rl_class.Rd |only rredlist-1.0.0/rredlist/man/rl_common_names.Rd | 52 - rredlist-1.0.0/rredlist/man/rl_comp_groups.Rd | 94 +- rredlist-1.0.0/rredlist/man/rl_countries.Rd | 87 +- rredlist-1.0.0/rredlist/man/rl_extinct.Rd |only rredlist-1.0.0/rredlist/man/rl_extinct_wild.Rd |only rredlist-1.0.0/rredlist/man/rl_family.Rd |only rredlist-1.0.0/rredlist/man/rl_faos.Rd |only rredlist-1.0.0/rredlist/man/rl_green.Rd |only rredlist-1.0.0/rredlist/man/rl_growth_forms.Rd | 103 +- rredlist-1.0.0/rredlist/man/rl_habitats.Rd | 95 +- rredlist-1.0.0/rredlist/man/rl_history.Rd | 66 - rredlist-1.0.0/rredlist/man/rl_kingdom.Rd |only rredlist-1.0.0/rredlist/man/rl_measures.Rd | 70 - rredlist-1.0.0/rredlist/man/rl_narrative.Rd | 69 - rredlist-1.0.0/rredlist/man/rl_occ_country.Rd | 67 - rredlist-1.0.0/rredlist/man/rl_order.Rd |only rredlist-1.0.0/rredlist/man/rl_phylum.Rd |only rredlist-1.0.0/rredlist/man/rl_pop_trends.Rd |only rredlist-1.0.0/rredlist/man/rl_realms.Rd |only rredlist-1.0.0/rredlist/man/rl_regions.Rd | 50 - rredlist-1.0.0/rredlist/man/rl_research.Rd |only rredlist-1.0.0/rredlist/man/rl_scopes.Rd |only rredlist-1.0.0/rredlist/man/rl_search.Rd | 66 - rredlist-1.0.0/rredlist/man/rl_sis.Rd |only rredlist-1.0.0/rredlist/man/rl_sis_latest.Rd |only rredlist-1.0.0/rredlist/man/rl_sp.Rd | 63 - rredlist-1.0.0/rredlist/man/rl_sp_category.Rd | 48 - rredlist-1.0.0/rredlist/man/rl_sp_citation.Rd | 69 - rredlist-1.0.0/rredlist/man/rl_sp_count.Rd | 29 rredlist-1.0.0/rredlist/man/rl_sp_country.Rd | 60 - rredlist-1.0.0/rredlist/man/rl_species.Rd |only rredlist-1.0.0/rredlist/man/rl_species_latest.Rd |only rredlist-1.0.0/rredlist/man/rl_stresses.Rd |only rredlist-1.0.0/rredlist/man/rl_synonyms.Rd | 52 - rredlist-1.0.0/rredlist/man/rl_systems.Rd |only rredlist-1.0.0/rredlist/man/rl_threats.Rd | 96 +- rredlist-1.0.0/rredlist/man/rl_use_and_trade.Rd |only rredlist-1.0.0/rredlist/man/rl_use_iucn.Rd | 20 rredlist-1.0.0/rredlist/man/rl_version.Rd | 19 rredlist-1.0.0/rredlist/man/roxygen |only rredlist-1.0.0/rredlist/man/rredlist-package.Rd | 64 - rredlist-1.0.0/rredlist/man/scale_iucn.Rd |only rredlist-1.0.0/rredlist/tests/fixtures/Rheidae_metadata.yml |only rredlist-1.0.0/rredlist/tests/fixtures/Sturnidae_metadata.yml |only rredlist-1.0.0/rredlist/tests/fixtures/page_assessments_multipage.yml |only rredlist-1.0.0/rredlist/tests/fixtures/page_assessments_singlepage.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_actions-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_actions-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_actions-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_actions.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_actions_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_actions_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_api_version.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_assessment-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_assessment.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_assessment_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_categories-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_categories-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_categories-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_categories.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_categories_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_categories_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_citation.yml | 30 rredlist-1.0.0/rredlist/tests/fixtures/rl_class-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_class-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_class-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_class.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_class_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_class_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_comp_groups-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_comp_groups-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_comp_groups-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_comp_groups.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_comp_groups_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_comp_groups_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_countries-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_countries-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_countries-not-parsing.yml | 216 +++-- rredlist-1.0.0/rredlist/tests/fixtures/rl_countries.yml | 216 +++-- rredlist-1.0.0/rredlist/tests/fixtures/rl_countries_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_countries_.yml | 98 -- rredlist-1.0.0/rredlist/tests/fixtures/rl_extinct-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_extinct.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_extinct_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_extinct_wild-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_extinct_wild.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_extinct_wild_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_family-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_family-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_family-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_family.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_family_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_family_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_faos-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_faos-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_faos-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_faos.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_faos_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_faos_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_green-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_green.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_green_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_growth_forms-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_growth_forms-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_growth_forms-not-parsing.yml | 113 ++ rredlist-1.0.0/rredlist/tests/fixtures/rl_growth_forms.yml | 113 ++ rredlist-1.0.0/rredlist/tests/fixtures/rl_growth_forms_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_growth_forms_.yml | 36 rredlist-1.0.0/rredlist/tests/fixtures/rl_habitats-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_habitats-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_habitats-not-parsing.yml | 87 +- rredlist-1.0.0/rredlist/tests/fixtures/rl_habitats.yml | 87 +- rredlist-1.0.0/rredlist/tests/fixtures/rl_habitats_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_habitats_.yml | 49 - rredlist-1.0.0/rredlist/tests/fixtures/rl_kingdom-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_kingdom-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_kingdom-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_kingdom.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_kingdom_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_kingdom_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_order-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_order-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_order-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_order.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_order_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_order_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_phylum-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_phylum-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_phylum-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_phylum.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_phylum_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_phylum_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_pop_trends-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_pop_trends-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_pop_trends-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_pop_trends.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_pop_trends_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_pop_trends_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_realms-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_realms-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_realms-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_realms.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_realms_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_realms_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_research-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_research-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_research-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_research.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_research_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_research_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_scopes-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_scopes-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_scopes-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_scopes.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_scopes_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_scopes_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_sis-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_sis.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_sis_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_sis_latest.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_sp_count.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_sp_count_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_species-badkey.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_species-badquery.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_species-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_species.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_species_-badkey.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_species_-badquery.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_species_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_species_latest.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_stresses-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_stresses-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_stresses-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_stresses.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_stresses_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_stresses_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_systems-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_systems-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_systems-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_systems.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_systems_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_systems_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_threats-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_threats-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_threats-not-parsing.yml | 187 +++- rredlist-1.0.0/rredlist/tests/fixtures/rl_threats.yml | 187 +++- rredlist-1.0.0/rredlist/tests/fixtures/rl_threats_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_threats_.yml | 69 - rredlist-1.0.0/rredlist/tests/fixtures/rl_threats_no_args.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_threats_with_args.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade-def-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade-not-parsing.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade_-def.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_use_and_trade_.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rl_version.yml | 27 rredlist-1.0.0/rredlist/tests/fixtures/rr_GET.yml |only rredlist-1.0.0/rredlist/tests/fixtures/rr_GET_raw.yml |only rredlist-1.0.0/rredlist/tests/spelling.R |only rredlist-1.0.0/rredlist/tests/testthat/_snaps |only rredlist-1.0.0/rredlist/tests/testthat/helper-rredlist.R | 12 rredlist-1.0.0/rredlist/tests/testthat/helper-vdiffr.R |only rredlist-1.0.0/rredlist/tests/testthat/test-defunct.R |only rredlist-1.0.0/rredlist/tests/testthat/test-fail-well.R | 73 + rredlist-1.0.0/rredlist/tests/testthat/test-rl_actions.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_assessment.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_categories.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_citation.R | 7 rredlist-1.0.0/rredlist/tests/testthat/test-rl_comp_groups.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_countries.R | 70 + rredlist-1.0.0/rredlist/tests/testthat/test-rl_extinct.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_extinct_wild.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_faos.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_green.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_growth_forms.R | 99 +- rredlist-1.0.0/rredlist/tests/testthat/test-rl_habitats.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_key.R | 7 rredlist-1.0.0/rredlist/tests/testthat/test-rl_latest.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_realms.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_research.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_scopes.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_sis.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_sp_count.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_species.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_stresses.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_systems.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_taxa.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_threats.R | 105 +- rredlist-1.0.0/rredlist/tests/testthat/test-rl_trends.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_use_and_trade.R |only rredlist-1.0.0/rredlist/tests/testthat/test-rl_version.R | 13 rredlist-1.0.0/rredlist/tests/testthat/test-zzz.R |only rredlist-1.0.0/rredlist/vignettes |only 325 files changed, 3024 insertions(+), 1747 deletions(-)
Title: 'shiny' Widgets for 'teal' Applications
Description: Collection of 'shiny' widgets to support 'teal' applications.
Enables the manipulation of application layout and plot or table
settings.
Author: Dawid Kaledkowski [aut, cre],
Pawel Rucki [aut],
Mahmoud Hallal [aut],
Nikolas Burkoff [aut],
Maciej Nasinski [aut],
Konrad Pagacz [aut],
Junlue Zhao [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.widgets versions 0.4.2 dated 2023-12-14 and 0.4.3 dated 2025-01-31
teal.widgets-0.4.2/teal.widgets/R/include_css_js.R |only teal.widgets-0.4.2/teal.widgets/inst/css |only teal.widgets-0.4.2/teal.widgets/inst/js |only teal.widgets-0.4.2/teal.widgets/inst/widgets |only teal.widgets-0.4.2/teal.widgets/man/include_css_files.Rd |only teal.widgets-0.4.2/teal.widgets/tests/testthat/Rplots.pdf |only teal.widgets-0.4.2/teal.widgets/tests/testthat/_snaps |only teal.widgets-0.4.2/teal.widgets/tests/testthat/helpers-with-settings.R |only teal.widgets-0.4.2/teal.widgets/tests/testthat/setup-skip_if_too_deep.R |only teal.widgets-0.4.3/teal.widgets/DESCRIPTION | 22 teal.widgets-0.4.3/teal.widgets/MD5 | 137 +- teal.widgets-0.4.3/teal.widgets/NEWS.md | 7 teal.widgets-0.4.3/teal.widgets/R/draggable_buckets.R | 55 - teal.widgets-0.4.3/teal.widgets/R/get_dt_rows.R | 17 teal.widgets-0.4.3/teal.widgets/R/ggplot2_args.R | 10 teal.widgets-0.4.3/teal.widgets/R/nested_closeable_modal.R | 36 teal.widgets-0.4.3/teal.widgets/R/optionalInput.R | 200 +-- teal.widgets-0.4.3/teal.widgets/R/panel_group.R | 86 + teal.widgets-0.4.3/teal.widgets/R/plot_with_settings.R | 365 +++---- teal.widgets-0.4.3/teal.widgets/R/standard_layout.R | 59 - teal.widgets-0.4.3/teal.widgets/R/table_with_settings.R | 72 - teal.widgets-0.4.3/teal.widgets/R/utils.R | 2 teal.widgets-0.4.3/teal.widgets/R/verbatim_popup.R | 28 teal.widgets-0.4.3/teal.widgets/R/white_small_well.R | 9 teal.widgets-0.4.3/teal.widgets/README.md | 9 teal.widgets-0.4.3/teal.widgets/build/vignette.rds |binary teal.widgets-0.4.3/teal.widgets/inst/doc/custom-basic-table-arguments.R | 72 - teal.widgets-0.4.3/teal.widgets/inst/doc/custom-basic-table-arguments.Rmd | 85 - teal.widgets-0.4.3/teal.widgets/inst/doc/custom-basic-table-arguments.html | 117 +- teal.widgets-0.4.3/teal.widgets/inst/doc/custom-ggplot2-arguments.R | 68 - teal.widgets-0.4.3/teal.widgets/inst/doc/custom-ggplot2-arguments.Rmd | 93 - teal.widgets-0.4.3/teal.widgets/inst/doc/custom-ggplot2-arguments.html | 117 +- teal.widgets-0.4.3/teal.widgets/inst/draggable-buckets |only teal.widgets-0.4.3/teal.widgets/inst/optional-select-input |only teal.widgets-0.4.3/teal.widgets/inst/panel-item |only teal.widgets-0.4.3/teal.widgets/inst/plot-with-settings |only teal.widgets-0.4.3/teal.widgets/inst/table-with-settings |only teal.widgets-0.4.3/teal.widgets/inst/verbatim-popup |only teal.widgets-0.4.3/teal.widgets/man/clean_brushedPoints.Rd | 34 teal.widgets-0.4.3/teal.widgets/man/draggable_buckets.Rd | 27 teal.widgets-0.4.3/teal.widgets/man/extract_choices_labels.Rd | 2 teal.widgets-0.4.3/teal.widgets/man/get_dt_rows.Rd | 13 teal.widgets-0.4.3/teal.widgets/man/ggplot2_args.Rd | 2 teal.widgets-0.4.3/teal.widgets/man/nested_closeable_modal.Rd | 34 teal.widgets-0.4.3/teal.widgets/man/optionalSelectInput.Rd | 174 +-- teal.widgets-0.4.3/teal.widgets/man/optionalSliderInput.Rd | 6 teal.widgets-0.4.3/teal.widgets/man/optionalSliderInputValMinMax.Rd | 4 teal.widgets-0.4.3/teal.widgets/man/panel_group.Rd | 41 teal.widgets-0.4.3/teal.widgets/man/panel_item.Rd | 30 teal.widgets-0.4.3/teal.widgets/man/parse_ggplot2_args.Rd | 4 teal.widgets-0.4.3/teal.widgets/man/plot_suppress.Rd | 4 teal.widgets-0.4.3/teal.widgets/man/plot_with_settings.Rd | 251 ++-- teal.widgets-0.4.3/teal.widgets/man/resolve_ggplot2_args.Rd | 4 teal.widgets-0.4.3/teal.widgets/man/standard_layout.Rd | 38 teal.widgets-0.4.3/teal.widgets/man/table_with_settings.Rd | 46 teal.widgets-0.4.3/teal.widgets/man/verbatim_popup.Rd | 6 teal.widgets-0.4.3/teal.widgets/man/white_small_well.Rd | 5 teal.widgets-0.4.3/teal.widgets/tests/testthat/helpers-testing-depth.R |only teal.widgets-0.4.3/teal.widgets/tests/testthat/helpers-utils.R |only teal.widgets-0.4.3/teal.widgets/tests/testthat/setup-options.R |only teal.widgets-0.4.3/teal.widgets/tests/testthat/test-ggplot2_args.R | 23 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-optionalInput.R | 10 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-plot_with_settings.R | 41 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-plot_with_settings_ui.R | 514 +++++++++- teal.widgets-0.4.3/teal.widgets/tests/testthat/test-standard_layout.R | 2 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-table_args.R | 4 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-table_with_settings.R | 25 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-table_with_settings_ui.R | 394 +++++++ teal.widgets-0.4.3/teal.widgets/tests/testthat/test-utils.R | 16 teal.widgets-0.4.3/teal.widgets/tests/testthat/test-verbatim_popup_ui.R |only teal.widgets-0.4.3/teal.widgets/vignettes/custom-basic-table-arguments.Rmd | 85 - teal.widgets-0.4.3/teal.widgets/vignettes/custom-ggplot2-arguments.Rmd | 93 - 72 files changed, 2358 insertions(+), 1240 deletions(-)
Title: Robustness Checks for Omitted Variable Bias
Description: Robustness checks for omitted variable bias. The package includes robustness checks proposed by Oster (2019). The 'robomit' package computes i) the bias-adjusted treatment correlation or effect and ii) the degree of selection on unobservables relative to observables (with respect to the treatment variable) that would be necessary to eliminate the result based on the framework by Oster (2019). The code is based on the 'psacalc' command in 'Stata'. Additionally, 'robomit' offers a set of sensitivity analysis and visualization functions. See Oster, E. 2019. <doi:10.1080/07350015.2016.1227711>. Additionally, see Diegert, P., Masten, M. A., & Poirier, A. (2022) for a recent discussion of the topic: <doi:10.48550/arXiv.2206.02303>.
Author: Sergei Schaub [aut, cre] ,
ETH Zurich [cph]
Maintainer: Sergei Schaub <sergei.schaub@agroscope.admin.ch>
Diff between robomit versions 1.0.6 dated 2021-06-22 and 1.0.7 dated 2025-01-31
DESCRIPTION | 16 MD5 | 28 R/robomit_functions.R | 3220 +++++++++++++++++++++++------------------------- man/o_beta.Rd | 6 man/o_beta_boot.Rd | 4 man/o_beta_boot_inf.Rd | 4 man/o_beta_boot_viz.Rd | 4 man/o_beta_rsq.Rd | 4 man/o_beta_rsq_viz.Rd | 4 man/o_delta.Rd | 6 man/o_delta_boot.Rd | 4 man/o_delta_boot_inf.Rd | 4 man/o_delta_boot_viz.Rd | 4 man/o_delta_rsq.Rd | 4 man/o_delta_rsq_viz.Rd | 4 15 files changed, 1618 insertions(+), 1698 deletions(-)
Title: Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, summarize, and apply Generalized Dissimilarity Models. Mokany K, Ware C, Woolley SNC, Ferrier S, Fitzpatrick MC (2022) <doi:10.1111/geb.13459> Ferrier S, Manion G, Elith J, Richardson K (2007) <doi:10.1111/j.1472-4642.2007.00341.x>.
Author: Matt Fitzpatrick [aut, cre] ,
Karel Mokany [aut] ,
Glenn Manion [aut],
Diego Nieto-Lugilde [aut] ,
Simon Ferrier [aut] ,
Roozbeh Valavi [ctb],
Matthew Lisk [ctb],
Chris Ware [ctb],
Skip Woolley [ctb],
Tom Harwood [ctb]
Maintainer: Matt Fitzpatrick <mfitzpatrick@umces.edu>
Diff between gdm versions 1.6.0-5 dated 2025-01-10 and 1.6.0-6 dated 2025-01-31
DESCRIPTION | 8 +++---- MD5 | 6 ++--- NEWS.md | 3 ++ inst/tinytest/test_gdm.R | 48 +++++++++++++++++++++++------------------------ 4 files changed, 34 insertions(+), 31 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between targets versions 1.10.0 dated 2025-01-13 and 1.10.1 dated 2025-01-31
DESCRIPTION | 6 ++-- MD5 | 48 +++++++++++++++++--------------- NEWS.md | 6 ++++ R/class_active.R | 50 +++++++++++++++++----------------- R/class_aws.R | 3 ++ R/class_crew.R | 16 ++++++++-- R/class_database.R | 13 ++++---- R/class_gcp.R | 3 ++ R/class_graph.R | 13 +++++--- R/class_meta.R | 15 +++++----- R/class_outdated.R | 2 - R/class_progress.R | 3 +- R/class_reporter.R | 6 +++- R/class_sequential.R | 6 ++-- R/class_summary.R | 3 ++ R/class_timestamp.R | 10 ++++++ R/class_verbose.R | 9 ++++++ R/tar_crew.R | 9 +++--- R/utils_cli.R | 13 ++++++++ man/tar_crew.Rd | 9 +++--- tests/interactive/test-crew_retries.R |only tests/testthat/test-class_reporter.R |only tests/testthat/test-class_summary.R | 12 ++++++++ tests/testthat/test-class_timestamp.R | 13 ++++++++ tests/testthat/test-class_verbose.R | 13 ++++++++ tests/testthat/test-utils_cli.R | 11 +++++++ 26 files changed, 208 insertions(+), 84 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative pipelines for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible pipelines concisely and compactly.
The methods in this package were influenced by the 'targets' R package.
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre]
,
Rudolf Siegel [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between tarchetypes versions 0.11.0 dated 2024-11-15 and 0.12.0 dated 2025-01-31
DESCRIPTION | 6 - MD5 | 97 ++++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 9 ++ R/class_step.R |only R/tar_combine.R | 8 +- R/tar_files.R | 25 +++++-- R/tar_map2_raw.R | 6 + R/tar_map_rep.R | 10 ++- R/tar_map_rep_raw.R | 69 ++++++++++++++++++---- R/tar_quarto.R | 4 - R/tar_quarto_files.R | 32 ++++++---- R/tar_quarto_raw.R | 13 +--- R/tar_rep2_raw.R | 6 + R/tar_rep_index.R |only R/tar_rep_raw.R | 6 + man/tar_age.Rd | 2 man/tar_change.Rd | 12 +++ man/tar_combine.Rd | 10 +-- man/tar_download.Rd | 12 +++ man/tar_file_read.Rd | 12 +++ man/tar_files.Rd | 27 ++++++-- man/tar_files_input.Rd | 2 man/tar_force.Rd | 12 +++ man/tar_formats.Rd | 12 +++ man/tar_formats_superseded.Rd | 12 +++ man/tar_group_by.Rd | 12 +++ man/tar_group_count.Rd | 12 +++ man/tar_group_select.Rd | 12 +++ man/tar_group_size.Rd | 12 +++ man/tar_knit.Rd | 2 man/tar_map2.Rd | 12 ++- man/tar_map2_count.Rd | 12 ++- man/tar_map2_size.Rd | 12 ++- man/tar_map_rep.Rd | 12 ++- man/tar_quarto.Rd | 6 + man/tar_quarto_files_get_source_files.Rd | 1 man/tar_quarto_rep.Rd | 6 + man/tar_quarto_run.Rd | 4 - man/tar_render.Rd | 2 man/tar_render_rep.Rd | 2 man/tar_rep.Rd | 2 man/tar_rep2.Rd | 2 man/tar_rep_index.Rd |only man/tar_rep_map.Rd | 12 +++ man/tar_rep_map_raw.Rd | 12 +++ man/tar_skip.Rd | 12 +++ tests/testthat/helper-utils.R | 1 tests/testthat/test-class_step.R |only tests/testthat/test-tar_map_rep.R | 55 +++++++++++++---- tests/testthat/test-tar_quarto_files.R | 4 - tests/testthat/test-tar_rep_index.R |only 52 files changed, 452 insertions(+), 172 deletions(-)
More information about StratifiedSampling at CRAN
Permanent link
Title: Analysing Accelerometer Data Using Hidden Markov Models
Description: Analysing time-series accelerometer data to quantify length and
intensity of physical activity using hidden Markov models.
It also contains the traditional cut-off point method.
Witowski V, Foraita R, Pitsiladis Y, Pigeot I, Wirsik N (2014).
<doi:10.1371/journal.pone.0114089>.
Author: Vitali Witowski [aut],
Foraita Ronja [cre, aut]
Maintainer: Foraita Ronja <foraita@leibniz-bips.de>
Diff between HMMpa versions 1.0.1 dated 2018-11-15 and 1.0.2 dated 2025-01-31
DESCRIPTION | 33 ++ MD5 | 71 +++--- NAMESPACE | 34 ++- NEWS.md |only R/AIC_HMM.R | 68 +++++- R/BIC_HMM.R | 67 +++++ R/Baum_Welch_algorithm.R | 172 +++++++++++++-- R/HMM_based_method.R | 346 +++++++++++++++++++++++------- R/HMM_decoding.R | 204 ++++++++++++++++-- R/HMM_simulation.R | 226 ++++++++++++++++--- R/HMM_training.R | 197 +++++++++++++++-- R/HMMpa-package.R |only R/Viterbi_algorithm.R | 283 +++++++++++++++---------- R/cut_off_point_method.R | 386 +++++++++++++++++++++++++++------- R/dgenpois.R | 44 +++ R/direct_numerical_maximization.R | 124 +++++++++- R/forward_backward_algorithm.R | 396 ++++++++++++++++++++--------------- R/initial_parameter_training.R | 168 +++++++++++--- R/local_decoding_algorithm.R | 127 +++++++++-- R/pgenpois.R | 56 ++++ R/rgenpois.R | 49 +++- README.md |only build |only man/AIC_HMM.Rd | 96 +++----- man/BIC_HMM.Rd |only man/Baum_Welch_algorithm.Rd | 282 ++++++++++++++---------- man/HMM_based_method.Rd | 386 ++++++++++++++++++---------------- man/HMM_decoding.Rd | 302 +++++++++++++------------- man/HMM_simulation.Rd | 291 +++++++++++++------------ man/HMM_training.Rd | 305 +++++++++++++++----------- man/HMMpa-package.Rd | 393 +++++++++++++--------------------- man/Viterbi_algorithm.Rd | 161 ++++++++------ man/cut_off_point_method.Rd | 295 +++++++++++++------------- man/dgenpois.Rd | 75 +++--- man/direct_numerical_maximization.Rd | 198 +++++++++-------- man/forward_backward_algorithm.Rd | 174 +++++++-------- man/initial_parameter_training.Rd | 152 +++++++------ man/local_decoding_algorithm.Rd | 158 ++++++++----- man/pgenpois.Rd |only man/rgenpois.Rd |only 40 files changed, 4078 insertions(+), 2241 deletions(-)
Title: Distance Metrics for High-Dimensional Clustering
Description: We provide three distance metrics for measuring the separation between two clusters in high-dimensional spaces. The first metric is the centroid distance, which calculates the Euclidean distance between the centers of the two groups. The second is a ridge Mahalanobis distance, which incorporates a ridge correction constant, alpha, to ensure that the covariance matrix is invertible. The third metric is the maximal data piling distance, which computes the orthogonal distance between the affine spaces spanned by each class. These three distances are asymptotically interconnected and are applicable in tasks such as discrimination, clustering, and outlier detection in high-dimensional settings.
Author: Jung Ae Lee [aut, cre],
Jeongyoun Ahn [aut]
Maintainer: Jung Ae Lee <jungaeleeb@gmail.com>
Diff between distanceHD versions 1.0 dated 2025-01-30 and 1.2 dated 2025-01-31
DESCRIPTION | 35 ++++++++++++++++------------------- MD5 | 4 ++-- man/dist_mdp.Rd | 2 +- 3 files changed, 19 insertions(+), 22 deletions(-)
Title: Comparison of Bioregionalisation Methods
Description: The main purpose of this package is to propose a transparent methodological framework to compare bioregionalisation methods based on hierarchical and non-hierarchical clustering algorithms (Kreft & Jetz (2010) <doi:10.1111/j.1365-2699.2010.02375.x>) and network algorithms (Lenormand et al. (2019) <doi:10.1002/ece3.4718> and Leroy et al. (2019) <doi:10.1111/jbi.13674>).
Author: Maxime Lenormand [aut, cre] ,
Boris Leroy [aut] ,
Pierre Denelle [aut]
Maintainer: Maxime Lenormand <maxime.lenormand@inrae.fr>
Diff between bioregion versions 1.1.1-1 dated 2024-11-11 and 1.2.0 dated 2025-01-31
bioregion-1.1.1-1/bioregion/R/compare_partitions.R |only bioregion-1.1.1-1/bioregion/R/map_clusters.R |only bioregion-1.1.1-1/bioregion/R/partition_metrics.R |only bioregion-1.1.1-1/bioregion/R/subset_node.R |only bioregion-1.1.1-1/bioregion/build/stage23.rdb |only bioregion-1.1.1-1/bioregion/man/compare_partitions.Rd |only bioregion-1.1.1-1/bioregion/man/figures/install_binaries_1.png |only bioregion-1.1.1-1/bioregion/man/figures/install_binaries_2.png |only bioregion-1.1.1-1/bioregion/man/figures/install_binaries_3.png |only bioregion-1.1.1-1/bioregion/man/figures/install_binaries_4.png |only bioregion-1.1.1-1/bioregion/man/map_clusters.Rd |only bioregion-1.1.1-1/bioregion/man/partition_metrics.Rd |only bioregion-1.1.1-1/bioregion/man/subset_node.Rd |only bioregion-1.2.0/bioregion/DESCRIPTION | 16 bioregion-1.2.0/bioregion/MD5 | 169 - bioregion-1.2.0/bioregion/NAMESPACE | 16 bioregion-1.2.0/bioregion/NEWS.md | 107 - bioregion-1.2.0/bioregion/R/betapart_to_bioregion.R |only bioregion-1.2.0/bioregion/R/bioregion_metrics.R |only bioregion-1.2.0/bioregion/R/bioregionalization_metrics.R |only bioregion-1.2.0/bioregion/R/clustermetrics.R |only bioregion-1.2.0/bioregion/R/compare_bioregionalizations.R |only bioregion-1.2.0/bioregion/R/cut_tree.R | 246 +- bioregion-1.2.0/bioregion/R/data.R | 16 bioregion-1.2.0/bioregion/R/dissimilarity.R | 110 - bioregion-1.2.0/bioregion/R/exportGDF.R |only bioregion-1.2.0/bioregion/R/find_optimal_n.R | 509 ++-- bioregion-1.2.0/bioregion/R/generic_functions.R | 116 + bioregion-1.2.0/bioregion/R/hclu_diana.R | 141 - bioregion-1.2.0/bioregion/R/hclu_hierarclust.R | 539 +++-- bioregion-1.2.0/bioregion/R/hclu_optics.R | 96 bioregion-1.2.0/bioregion/R/install_binaries.R | 1041 +++++----- bioregion-1.2.0/bioregion/R/iterative_hierarchical_consensus_tree.R |only bioregion-1.2.0/bioregion/R/map_bioregions.R |only bioregion-1.2.0/bioregion/R/mat_to_net.R | 63 bioregion-1.2.0/bioregion/R/net_to_mat.R | 70 bioregion-1.2.0/bioregion/R/netclu_beckett.R | 148 - bioregion-1.2.0/bioregion/R/netclu_greedy.R | 87 bioregion-1.2.0/bioregion/R/netclu_infomap.R | 218 +- bioregion-1.2.0/bioregion/R/netclu_labelprop.R | 103 bioregion-1.2.0/bioregion/R/netclu_leadingeigen.R | 108 - bioregion-1.2.0/bioregion/R/netclu_leiden.R | 131 - bioregion-1.2.0/bioregion/R/netclu_louvain.R | 221 +- bioregion-1.2.0/bioregion/R/netclu_oslom.R | 204 + bioregion-1.2.0/bioregion/R/netclu_walktrap.R | 96 bioregion-1.2.0/bioregion/R/nhclu_affprop.R |only bioregion-1.2.0/bioregion/R/nhclu_clara.R | 141 - bioregion-1.2.0/bioregion/R/nhclu_clarans.R | 113 - bioregion-1.2.0/bioregion/R/nhclu_dbscan.R | 164 - bioregion-1.2.0/bioregion/R/nhclu_kmeans.R | 148 - bioregion-1.2.0/bioregion/R/nhclu_pam.R | 135 - bioregion-1.2.0/bioregion/R/package.R | 6 bioregion-1.2.0/bioregion/R/similarity.R | 126 - bioregion-1.2.0/bioregion/R/similarity_dissimilarity_conversion.R | 75 bioregion-1.2.0/bioregion/R/site_species_metrics.R |only bioregion-1.2.0/bioregion/R/site_species_subset.R |only bioregion-1.2.0/bioregion/R/utils.R | 284 +- bioregion-1.2.0/bioregion/README.md | 20 bioregion-1.2.0/bioregion/build/partial.rdb |binary bioregion-1.2.0/bioregion/inst/REFERENCES.bib | 530 ++--- bioregion-1.2.0/bioregion/inst/doc/bioregion.Rmd | 31 bioregion-1.2.0/bioregion/inst/doc/bioregion.html | 32 bioregion-1.2.0/bioregion/man/betapart_to_bioregion.Rd |only bioregion-1.2.0/bioregion/man/bioregion_metrics.Rd |only bioregion-1.2.0/bioregion/man/bioregionalization_metrics.Rd |only bioregion-1.2.0/bioregion/man/compare_bioregionalizations.Rd |only bioregion-1.2.0/bioregion/man/cut_tree.Rd | 117 - bioregion-1.2.0/bioregion/man/dissimilarity.Rd | 96 bioregion-1.2.0/bioregion/man/dissimilarity_to_similarity.Rd | 31 bioregion-1.2.0/bioregion/man/figures/zscore_scheme.svg |only bioregion-1.2.0/bioregion/man/find_optimal_n.Rd | 263 -- bioregion-1.2.0/bioregion/man/fishdf.Rd | 4 bioregion-1.2.0/bioregion/man/fishsf.Rd | 4 bioregion-1.2.0/bioregion/man/hclu_diana.Rd | 69 bioregion-1.2.0/bioregion/man/hclu_hierarclust.Rd | 238 +- bioregion-1.2.0/bioregion/man/hclu_optics.Rd | 76 bioregion-1.2.0/bioregion/man/install_binaries.Rd | 51 bioregion-1.2.0/bioregion/man/map_bioregions.Rd |only bioregion-1.2.0/bioregion/man/mat_to_net.Rd | 43 bioregion-1.2.0/bioregion/man/net_to_mat.Rd | 60 bioregion-1.2.0/bioregion/man/netclu_beckett.Rd | 108 - bioregion-1.2.0/bioregion/man/netclu_greedy.Rd | 37 bioregion-1.2.0/bioregion/man/netclu_infomap.Rd | 113 - bioregion-1.2.0/bioregion/man/netclu_labelprop.Rd | 66 bioregion-1.2.0/bioregion/man/netclu_leadingeigen.Rd | 71 bioregion-1.2.0/bioregion/man/netclu_leiden.Rd | 92 bioregion-1.2.0/bioregion/man/netclu_louvain.Rd | 150 - bioregion-1.2.0/bioregion/man/netclu_oslom.Rd | 111 - bioregion-1.2.0/bioregion/man/netclu_walktrap.Rd | 59 bioregion-1.2.0/bioregion/man/nhclu_affprop.Rd |only bioregion-1.2.0/bioregion/man/nhclu_clara.Rd | 89 bioregion-1.2.0/bioregion/man/nhclu_clarans.Rd | 73 bioregion-1.2.0/bioregion/man/nhclu_dbscan.Rd | 147 - bioregion-1.2.0/bioregion/man/nhclu_kmeans.Rd | 102 bioregion-1.2.0/bioregion/man/nhclu_pam.Rd | 99 bioregion-1.2.0/bioregion/man/similarity.Rd | 98 bioregion-1.2.0/bioregion/man/similarity_to_dissimilarity.Rd | 27 bioregion-1.2.0/bioregion/man/site_species_metrics.Rd |only bioregion-1.2.0/bioregion/man/site_species_subset.Rd |only bioregion-1.2.0/bioregion/man/vegedf.Rd | 4 bioregion-1.2.0/bioregion/man/vegesf.Rd | 4 bioregion-1.2.0/bioregion/vignettes/bioregion.Rmd | 31 102 files changed, 4969 insertions(+), 3940 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau
APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's
geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping
and spatial analysis.
Author: Kyle Walker [aut, cre],
Matt Herman [aut],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tidycensus versions 1.7.0 dated 2025-01-23 and 1.7.1 dated 2025-01-31
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/pums.R | 15 +++++++++++---- data/pums_variables.rda |binary man/pums_variables.Rd | 2 +- 5 files changed, 20 insertions(+), 13 deletions(-)
Title: Statistical Functions for the
Maxwell-Boltzmann-Bose-Einstein-Fermi-Dirac (MBBEFD) Family of
Distributions
Description: Provides probability mass, distribution, quantile, random variate
generation, and method-of-moments parameter fitting for the MBBEFD family of
distributions used in insurance modeling as described in Bernegger (1997)
<doi:10.2143/AST.27.1.563208> without any external dependencies.
Author: Avraham Adler [aut, cre, cph]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between MBBEFDLite versions 0.0.4 dated 2024-07-24 and 0.0.5 dated 2025-01-31
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/mom.R | 8 +++++--- build/partial.rdb |binary inst/CITATION | 2 +- inst/NEWS.Rd | 15 +++++++++++++++ inst/tinytest/test_package_metadata.R | 4 ++-- 7 files changed, 32 insertions(+), 15 deletions(-)
Title: Construct Modeling Packages
Description: Building modeling packages is hard. A large amount of effort
generally goes into providing an implementation for a new method that
is efficient, fast, and correct, but often less emphasis is put on the
user interface. A good interface requires specialized knowledge about
S3 methods and formulas, which the average package developer might not
have. The goal of 'hardhat' is to reduce the burden around building
new modeling packages by providing functionality for preprocessing,
predicting, and validating input.
Author: Hannah Frick [aut, cre] ,
Davis Vaughan [aut],
Max Kuhn [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between hardhat versions 1.4.0 dated 2024-06-02 and 1.4.1 dated 2025-01-31
DESCRIPTION | 12 MD5 | 218 +++--- NAMESPACE | 14 NEWS.md | 8 R/blueprint-formula-default.R | 137 ++- R/blueprint-recipe-default.R | 107 +- R/blueprint-xy-default.R | 78 +- R/blueprint.R | 7 R/case-weights.R | 10 R/classes.R | 9 R/constructor.R | 19 R/encoding.R | 4 R/extract.R | 4 R/forge.R | 7 R/hardhat-package.R | 2 R/import-standalone-obj-type.R | 29 R/import-standalone-types-check.R | 20 R/intercept.R | 28 R/model-frame.R | 9 R/model-matrix.R | 38 - R/model-offset.R | 19 R/mold.R | 10 R/print.R | 29 R/ptype.R | 8 R/quantile-pred.R |only R/recompose.R | 24 R/scream.R | 23 R/shrink.R | 10 R/sparsevctrs.R |only R/spruce.R | 6 R/standardize.R | 20 R/table.R | 10 R/tune.R | 9 R/use.R | 12 R/util.R | 45 - R/validation.R | 182 ++--- README.md | 2 build/vignette.rds |binary inst/doc/forge.R | 15 inst/doc/forge.Rmd | 9 inst/doc/forge.html | 348 ++++----- inst/doc/mold.R | 11 inst/doc/mold.Rmd | 9 inst/doc/mold.html | 470 ++++++------- inst/doc/package.R | 15 inst/doc/package.Rmd | 9 inst/doc/package.html | 756 ++++++++++----------- man/add_intercept_column.Rd | 6 man/check_quantile_levels.Rd |only man/contr_one_hot.Rd | 71 + man/default_recipe_blueprint.Rd | 4 man/extract_ptype.Rd | 6 man/get_data_classes.Rd | 6 man/model_frame.Rd | 6 man/model_matrix.Rd | 6 man/model_offset.Rd | 6 man/mold.Rd | 4 man/quantile_pred.Rd |only man/recompose.Rd | 4 man/rmd |only man/run-forge.Rd | 8 man/run-mold.Rd | 8 man/scream.Rd | 6 man/shrink.Rd | 6 man/tune.Rd | 2 man/validate_column_names.Rd | 6 man/validate_outcomes_are_binary.Rd | 6 man/validate_outcomes_are_factors.Rd | 6 man/validate_outcomes_are_numeric.Rd | 6 man/validate_prediction_size.Rd | 6 man/validate_predictors_are_numeric.Rd | 6 tests/testthat/_snaps/blueprint-formula-default.md |only tests/testthat/_snaps/blueprint.md |only tests/testthat/_snaps/constructor.md | 30 tests/testthat/_snaps/encoding.md | 2 tests/testthat/_snaps/forge-formula.md | 116 ++- tests/testthat/_snaps/forge-recipe.md | 63 + tests/testthat/_snaps/forge-xy.md | 85 ++ tests/testthat/_snaps/forge.md | 2 tests/testthat/_snaps/intercept.md | 11 tests/testthat/_snaps/levels.md |only tests/testthat/_snaps/model-matrix.md |only tests/testthat/_snaps/model-offset.md |only tests/testthat/_snaps/mold-formula.md | 155 +++- tests/testthat/_snaps/mold-recipe.md |only tests/testthat/_snaps/mold.md | 2 tests/testthat/_snaps/print.md | 68 - tests/testthat/_snaps/quantile-pred.md |only tests/testthat/_snaps/recompose.md | 10 tests/testthat/_snaps/spruce.md | 72 ++ tests/testthat/_snaps/standardize.md | 34 tests/testthat/_snaps/table.md | 4 tests/testthat/_snaps/tune.md |only tests/testthat/_snaps/use.md | 4 tests/testthat/_snaps/validation.md |only tests/testthat/helper-sparsevctrs.R |only tests/testthat/test-blueprint-formula-default.R |only tests/testthat/test-blueprint.R |only tests/testthat/test-constructor.R | 11 tests/testthat/test-forge-formula.R | 118 +-- tests/testthat/test-forge-recipe.R | 133 ++- tests/testthat/test-forge-xy.R | 110 +-- tests/testthat/test-intercept.R | 6 tests/testthat/test-levels.R | 6 tests/testthat/test-model-matrix.R | 35 tests/testthat/test-model-offset.R | 12 tests/testthat/test-mold-formula.R | 108 +-- tests/testthat/test-mold-recipe.R | 52 + tests/testthat/test-print.R | 2 tests/testthat/test-quantile-pred.R |only tests/testthat/test-recompose.R | 65 + tests/testthat/test-spruce.R | 37 - tests/testthat/test-standardize.R | 10 tests/testthat/test-tune.R | 6 tests/testthat/test-use.R | 6 tests/testthat/test-validation.R | 78 +- vignettes/forge.Rmd | 9 vignettes/mold.Rmd | 9 vignettes/package.Rmd | 9 119 files changed, 2756 insertions(+), 1720 deletions(-)
Title: Plotting Expected Goals (xG) Stats with 'Understat' Data
Description: Scrapes shots data from 'Understat' <https://understat.com/> and visualizes it using interactive plots:
- A detailed shot map displaying the location, type, and xG value of shots taken by both teams.
- An xG timeline chart showing the cumulative xG for each team over time, annotated with the details of scored goals.
Author: Aymen Nasri [aut, cre, cph]
Maintainer: Aymen Nasri <aymennasrii@proton.me>
Diff between ggfootball versions 0.1.0 dated 2025-01-30 and 0.2.0 dated 2025-01-31
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 19 ++++++++++++++----- R/xg_chart.R | 13 +++++++------ R/xg_map.R | 4 ++-- README.md | 10 ++++++---- man/xg_chart.Rd | 17 ++++++++++------- man/xg_map.Rd | 6 +++--- 8 files changed, 53 insertions(+), 38 deletions(-)
More information about ggsurveillance at CRAN
Permanent link
Title: Generator of Main Scientific References
Description: Generates a list, with a size defined by the user, containing the main scientific references and the frequency distribution of authors and journals in the list obtained.
The database is a dataframe with academic production metadata made available by bibliographic collections such as Scopus, Web of Science, etc.
The temporal evolution of scientific production on a given topic is presented and ordered lists of articles are constructed by number of citations and of authors and journals by level of productivity.
Massimo Aria, Corrado Cuccurullo. (2017) <doi:10.1016/j.joi.2017.08.007>.
Caibo Zhou, Wenyan Song. (2021) <doi:10.1016/j.jclepro.2021.126943>.
Author: Marcio Eustaquio [aut, cre]
Maintainer: Marcio Eustaquio <marcioeustaquio@id.uff.br>
Diff between bibliorefer versions 0.1.0 dated 2024-03-08 and 0.1.1 dated 2025-01-31
DESCRIPTION | 6 +++--- MD5 | 12 +++++++----- NAMESPACE | 1 + R/ajust_pagin.R |only R/crit_quant.R | 2 +- R/principal_lister.R | 30 ++++++++++++++++++++++-------- man/ajust_pagin.Rd |only man/crit_quant.Rd | 2 +- 8 files changed, 35 insertions(+), 18 deletions(-)
Title: Tests of Independence Between Innovations of Generalized Error
Models
Description: Computation of test statistics of independence between (continuous) innovations of time series. They can be used with stochastic volatility models and Hidden Markov Models (HMM). This improves the results in Duchesne, Ghoudi & Remillard (2012) <doi:10.1002/cjs.11141>.
Author: Kilani Ghoudi [aut, ctb, cph],
Bouchra R. Nasri [aut, ctb, cph],
Bruno N Remillard [aut, cre, cph],
Pierre Duchesne [aut, ctb, cph]
Maintainer: Bruno N Remillard <bruno.remillard@hec.ca>
Diff between IndGenErrors versions 0.1.4 dated 2023-06-30 and 0.1.6 dated 2025-01-31
IndGenErrors-0.1.4/IndGenErrors/R/Dependogram.R |only IndGenErrors-0.1.4/IndGenErrors/man/Dependogram.Rd |only IndGenErrors-0.1.6/IndGenErrors/DESCRIPTION | 16 +++--- IndGenErrors-0.1.6/IndGenErrors/MD5 | 26 ++++++----- IndGenErrors-0.1.6/IndGenErrors/NAMESPACE | 8 ++- IndGenErrors-0.1.6/IndGenErrors/R/CrossCorrelogram.R | 2 IndGenErrors-0.1.6/IndGenErrors/R/crosscor_3series.R | 16 ++---- IndGenErrors-0.1.6/IndGenErrors/R/crossdep_2series.R |only IndGenErrors-0.1.6/IndGenErrors/R/crossdep_3series.R |only IndGenErrors-0.1.6/IndGenErrors/R/cvm_2series.R | 2 IndGenErrors-0.1.6/IndGenErrors/R/cvm_3series.R | 9 --- IndGenErrors-0.1.6/IndGenErrors/R/dependogram.R |only IndGenErrors-0.1.6/IndGenErrors/man/CrossCorrelogram.Rd | 7 ++ IndGenErrors-0.1.6/IndGenErrors/man/crosscor_3series.Rd | 6 +- IndGenErrors-0.1.6/IndGenErrors/man/crossdep_2series.Rd |only IndGenErrors-0.1.6/IndGenErrors/man/crossdep_3series.Rd |only IndGenErrors-0.1.6/IndGenErrors/man/dependogram.Rd |only IndGenErrors-0.1.6/IndGenErrors/src/calcul_cvm_crosscor_3d.c | 3 - 18 files changed, 49 insertions(+), 46 deletions(-)
Title: Analysis of Intra Annual Density Fluctuations
Description: Calculate false ring proportions from data frames of intra annual
density fluctuations.
Author: Konrad Mayer [aut, cre],
Filipe Campelo [aut]
Maintainer: Konrad Mayer <konrad.mayer@gmail.com>
Diff between iadf versions 0.1.2 dated 2021-05-24 and 0.1.3 dated 2025-01-31
DESCRIPTION | 8 - MD5 | 18 +- NAMESPACE | 1 NEWS.md | 4 R/false_ring_proportion.R | 231 ++++++++++--------------------------- R/tidy.R | 9 - README.md | 28 ++-- build/vignette.rds |binary inst/doc/falsering-proportion.R | 24 +-- inst/doc/falsering-proportion.html | 98 +++++++++------ 10 files changed, 178 insertions(+), 243 deletions(-)
Title: Optimal Subset Selection for Transformation Models
Description: Greedy optimal subset selection for transformation models
(Hothorn et al., 2018, <doi:10.1111/sjos.12291> ) based on the abess
algorithm (Zhu et al., 2020, <doi:10.1073/pnas.2014241117> ). Applicable to
models from packages 'tram' and 'cotram'. Application to shift-scale
transformation models are described in Siegfried et al. (2024,
<doi:10.1080/00031305.2023.2203177>).
Author: Lucas Kook [aut, cre] ,
Sandra Siegfried [ctb],
Torsten Hothorn [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between tramvs versions 0.0-6 dated 2024-09-04 and 0.0-7 dated 2025-01-31
DESCRIPTION | 17 ++++--- MD5 | 8 +-- R/tramvs.R | 115 +++++++++++++++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/tramvs.pdf |binary 5 files changed, 87 insertions(+), 53 deletions(-)
Title: Functions for Epidemiological Analysis using Population Data
Description: Enables computation of epidemiological statistics, including
those where counts or mortality rates of the reference population are
used. Currently supported: excess hazard models (Dickman, Sloggett,
Hills, and Hakulinen (2012) <doi:10.1002/sim.1597>), rates, mean
survival times, relative/net survival (in particular the Ederer II
(Ederer and Heise (1959)) and Pohar Perme (Pohar Perme, Stare, and
Esteve (2012) <doi:10.1111/j.1541-0420.2011.01640.x>) estimators), and
standardized incidence and mortality ratios, all of which can be
easily adjusted for by covariates such as age. Fast splitting and
aggregation of 'Lexis' objects (from package 'Epi') and other
computations achieved using 'data.table'.
Author: Joonas Miettinen [cre, aut] ,
Matti Rantanen [aut],
Karri Seppa [ctb]
Maintainer: Joonas Miettinen <joonas.miettinen@cancer.fi>
Diff between popEpi versions 0.4.12 dated 2024-05-10 and 0.4.13 dated 2025-01-31
DESCRIPTION | 11 LICENSE | 2 MD5 | 240 ++-- NEWS.md | 5 R/S3_definitions.R | 802 +++++++-------- R/Surv.R | 18 R/aggregating.R | 440 ++++---- R/data_document.R | 66 - R/direct_adjusting.R | 180 +-- R/evaluation.R | 4 R/flexyargs.R | 182 +-- R/fractional_years.R | 112 +- R/incidence_rates.R | 186 +-- R/incidence_rates_utils.R | 70 - R/lexpand.R | 766 +++++++------- R/long_df_and_array.R | 86 - R/ltable.R | 220 ++-- R/mean_survival.R | 458 ++++---- R/popEpi-package.R | 24 R/pophaz.R | 58 - R/prevalence.R | 86 - R/relative_poisson.R | 398 +++---- R/relative_poisson_net_survival.R | 84 - R/sir.R | 874 ++++++++--------- R/sir_utils.R | 68 - R/splitLexisDT.R | 197 +-- R/splitMulti.R | 226 ++-- R/splitting_utility_functions.R | 704 ++++++------- R/startup_message.R | 6 R/survival_aggregated.R | 574 +++++------ R/survival_lexis.R | 324 +++--- R/survival_utility_functions.R | 278 ++--- R/utility_functions.R | 619 +++++------- R/weighted_table.R | 336 +++--- README.md | 42 build/partial.rdb |binary build/vignette.rds |binary inst/doc/sir.html | 4 inst/doc/survtab_examples.html | 4 man/ICSS.Rd | 8 man/Lexis_fpa.Rd | 40 man/Surv.Rd | 2 man/adjust.Rd | 2 man/aggre.Rd | 77 - man/all_names_present.Rd | 8 man/array_df_ratetable_utils.Rd | 144 +- man/as.Date.yrs.Rd | 8 man/as.aggre.Rd | 12 man/cast_simple.Rd | 16 man/cut_bound.Rd | 2 man/direct_standardization.Rd | 30 man/fac2num.Rd | 6 man/flexible_argument.Rd | 24 man/get.yrs.Rd | 43 man/is.Date.Rd | 9 man/is_leap_year.Rd | 4 man/lexpand.Rd | 182 +-- man/lines.sirspline.Rd | 6 man/lines.survmean.Rd | 8 man/lines.survtab.Rd | 12 man/ltable.Rd | 90 - man/meanpop_fi.Rd | 14 man/na2zero.Rd | 6 man/plot.rate.Rd | 8 man/plot.sir.Rd | 26 man/plot.sirspline.Rd | 6 man/plot.survmean.Rd | 8 man/plot.survtab.Rd | 14 man/popEpi-package.Rd | 8 man/pophaz.Rd | 16 man/popmort.Rd | 20 man/prepExpo.Rd | 34 man/print.aggre.Rd | 8 man/print.rate.Rd | 4 man/print.survtab.Rd | 8 man/rate.Rd | 30 man/rate_ratio.Rd | 16 man/relpois.Rd | 29 man/relpois_ag.Rd | 22 man/robust_values.Rd | 2 man/rpcurve.Rd | 16 man/setaggre.Rd | 16 man/setclass.Rd | 4 man/setcolsnull.Rd | 6 man/sibr.Rd | 12 man/sir.Rd | 94 - man/sir_exp.Rd | 26 man/sir_ratio.Rd | 16 man/sire.Rd | 12 man/sirspline.Rd | 43 man/splitLexisDT.Rd | 29 man/splitMulti.Rd | 76 - man/stdpop101.Rd | 4 man/stdpop18.Rd | 10 man/summary.aggre.Rd | 4 man/summary.survtab.Rd | 20 man/survmean.Rd | 44 man/survtab.Rd | 167 +-- man/survtab_ag.Rd | 199 +-- man/try2int.Rd | 4 tests/testthat/test_Surv.R | 4 tests/testthat/test_aggre.R | 110 +- tests/testthat/test_epi.R | 10 tests/testthat/test_expo.R | 38 tests/testthat/test_lexpand.R | 218 ++-- tests/testthat/test_prevtab.R | 16 tests/testthat/test_rate.R | 112 +- tests/testthat/test_relpois_mean_curve.R | 24 tests/testthat/test_sir.R | 232 ++-- tests/testthat/test_splitLexisDT.R | 70 - tests/testthat/test_splitMulti.R | 82 - tests/testthat/test_splitting_attributes.R | 36 tests/testthat/test_splitting_breaks.R | 36 tests/testthat/test_splitting_randomly_on_fixed_data.R | 16 tests/testthat/test_survmean.R | 174 +-- tests/testthat/test_survtab_adjusted.R | 60 - tests/testthat/test_survtab_bad_surv_ints.R | 34 tests/testthat/test_survtab_relative.R | 97 - tests/testthat/test_survtab_usage.R | 256 ++-- tests/testthat/test_utils.R | 282 ++--- tests/testthat/test_weighter.R | 90 - 121 files changed, 6271 insertions(+), 6294 deletions(-)
Title: Test Theory Analysis and Biclustering
Description: Implements comprehensive test data engineering methods as described in
Shojima (2022, ISBN:978-9811699856). Provides statistical techniques for
engineering and processing test data: Classical Test Theory (CTT) with
reliability coefficients for continuous ability assessment; Item Response
Theory (IRT) including Rasch, 2PL, and 3PL models with item/test information
functions; Latent Class Analysis (LCA) for nominal clustering; Latent Rank
Analysis (LRA) for ordinal clustering with automatic determination of cluster
numbers; Biclustering methods including infinite relational models for
simultaneous clustering of examinees and items without predefined cluster
numbers; and Bayesian Network Models (BNM) for visualizing inter-item
dependencies. Features local dependence analysis through LRA and biclustering,
parameter estimation, dimensionality assessment, and network structure
visualization for educational, psychological, and social science research.
Author: Koji Kosugi [aut, cre]
Maintainer: Koji Kosugi <kosugitti@gmail.com>
Diff between exametrika versions 1.1.0 dated 2024-11-22 and 1.2.0 dated 2025-01-31
exametrika-1.1.0/exametrika/R/BinaryFunctionFactory.R |only exametrika-1.1.0/exametrika/R/Ch00dataFormat.R |only exametrika-1.1.0/exametrika/R/Ch02TestItemAnalysis.R |only exametrika-1.1.0/exametrika/R/Ch03CTT.R |only exametrika-1.1.0/exametrika/R/Ch04AbilityEstimation.R |only exametrika-1.1.0/exametrika/R/Ch04IRTbaseFunctions.R |only exametrika-1.1.0/exametrika/R/Ch04ParameterEstimation.R |only exametrika-1.1.0/exametrika/R/Ch07InfiniteRelationalModel.R |only exametrika-1.1.0/exametrika/R/EMclus.R |only exametrika-1.1.0/exametrika/R/IRPindex.R |only exametrika-1.1.0/exametrika/R/ModelFitModule.R |only exametrika-1.1.0/exametrika/R/ch05LCA.R |only exametrika-1.1.0/exametrika/R/ch06LRA.R |only exametrika-1.1.0/exametrika/R/ch07Biclustering.R |only exametrika-1.1.0/exametrika/R/ch08BNM.R |only exametrika-1.1.0/exametrika/R/ch08BNM_GA.R |only exametrika-1.1.0/exametrika/R/ch08GA_utils.R |only exametrika-1.1.0/exametrika/R/ch09LDLRA.R |only exametrika-1.1.0/exametrika/R/ch09LDLRA_GA.R |only exametrika-1.1.0/exametrika/R/ch10LDB.R |only exametrika-1.1.0/exametrika/R/ch11BINET.R |only exametrika-1.1.0/exametrika/R/dataset_explain.R |only exametrika-1.1.0/exametrika/R/exametrikaPlot.R |only exametrika-1.1.0/exametrika/R/exametrikaPrint.R |only exametrika-1.1.0/exametrika/R/progressbar.R |only exametrika-1.1.0/exametrika/man/createBinaryFunction.Rd |only exametrika-1.1.0/exametrika/man/dataFormat.long.Rd |only exametrika-1.2.0/exametrika/DESCRIPTION | 9 exametrika-1.2.0/exametrika/MD5 | 223 +++++----- exametrika-1.2.0/exametrika/NAMESPACE | 47 ++ exametrika-1.2.0/exametrika/NEWS.md | 46 +- exametrika-1.2.0/exametrika/R/00_EMclus.R |only exametrika-1.2.0/exametrika/R/00_IRPindex.R |only exametrika-1.2.0/exametrika/R/00_ModelFitModule.R |only exametrika-1.2.0/exametrika/R/00_QitemFunctions.R |only exametrika-1.2.0/exametrika/R/00_dataset_explain.R |only exametrika-1.2.0/exametrika/R/00_exametrikaPlot.R |only exametrika-1.2.0/exametrika/R/00_exametrikaPrint.R |only exametrika-1.2.0/exametrika/R/00_typeErrorMessage.R |only exametrika-1.2.0/exametrika/R/01_dataFormat.R |only exametrika-1.2.0/exametrika/R/02B_TestStatistics.R |only exametrika-1.2.0/exametrika/R/02C_ItemStatistics.R |only exametrika-1.2.0/exametrika/R/02D_StudentAnalysis.R |only exametrika-1.2.0/exametrika/R/02_TestItemFunctions.R |only exametrika-1.2.0/exametrika/R/03_CTT.R |only exametrika-1.2.0/exametrika/R/04A_IRTbaseFunctions.R |only exametrika-1.2.0/exametrika/R/04B_AbilityEstimation.R |only exametrika-1.2.0/exametrika/R/04C_ParameterEstimation.R |only exametrika-1.2.0/exametrika/R/05_LCA.R |only exametrika-1.2.0/exametrika/R/06_LRA.R |only exametrika-1.2.0/exametrika/R/07B_InfiniteRelationalModel.R |only exametrika-1.2.0/exametrika/R/07_Biclustering.R |only exametrika-1.2.0/exametrika/R/08A_BNM.R |only exametrika-1.2.0/exametrika/R/08B_GA_utils.R |only exametrika-1.2.0/exametrika/R/08C_BNM_GA.R |only exametrika-1.2.0/exametrika/R/09B_LDLRA_GA.R |only exametrika-1.2.0/exametrika/R/09_LDLRA.R |only exametrika-1.2.0/exametrika/R/10_LDB.R |only exametrika-1.2.0/exametrika/R/11_BINET.R |only exametrika-1.2.0/exametrika/README.md | 8 exametrika-1.2.0/exametrika/data/J12S5000.rda |binary exametrika-1.2.0/exametrika/data/J15S3810.rda |only exametrika-1.2.0/exametrika/data/J15S500.rda |binary exametrika-1.2.0/exametrika/data/J20S400.rda |binary exametrika-1.2.0/exametrika/data/J35S5000.rda |only exametrika-1.2.0/exametrika/data/J35S515.rda |binary exametrika-1.2.0/exametrika/data/J5S10.rda |binary exametrika-1.2.0/exametrika/man/AlphaCoefficient.Rd | 10 exametrika-1.2.0/exametrika/man/AlphaIfDel.Rd | 2 exametrika-1.2.0/exametrika/man/BINET.Rd | 2 exametrika-1.2.0/exametrika/man/BNM.Rd | 2 exametrika-1.2.0/exametrika/man/Biclustering.Rd | 2 exametrika-1.2.0/exametrika/man/Biserial_Correlation.Rd | 2 exametrika-1.2.0/exametrika/man/BitRespPtn.Rd | 2 exametrika-1.2.0/exametrika/man/CCRR.Rd | 7 exametrika-1.2.0/exametrika/man/CTT.Rd | 12 exametrika-1.2.0/exametrika/man/Dimensionality.Rd | 12 exametrika-1.2.0/exametrika/man/FieldAnalysis.Rd | 12 exametrika-1.2.0/exametrika/man/IIF2PLM.Rd | 2 exametrika-1.2.0/exametrika/man/IIF3PLM.Rd | 2 exametrika-1.2.0/exametrika/man/IRM.Rd | 2 exametrika-1.2.0/exametrika/man/IRT.Rd | 2 exametrika-1.2.0/exametrika/man/ITBiserial.Rd | 11 exametrika-1.2.0/exametrika/man/InterItemAnalysis.Rd | 7 exametrika-1.2.0/exametrika/man/ItemEntropy.Rd | 8 exametrika-1.2.0/exametrika/man/ItemFit.Rd | 2 exametrika-1.2.0/exametrika/man/ItemInformationFunc.Rd | 2 exametrika-1.2.0/exametrika/man/ItemLift.Rd | 7 exametrika-1.2.0/exametrika/man/ItemOdds.Rd | 7 exametrika-1.2.0/exametrika/man/ItemReport.Rd |only exametrika-1.2.0/exametrika/man/ItemStatistics.Rd | 2 exametrika-1.2.0/exametrika/man/ItemThreshold.Rd | 7 exametrika-1.2.0/exametrika/man/ItemTotalCorr.Rd | 7 exametrika-1.2.0/exametrika/man/J12S5000.Rd | 8 exametrika-1.2.0/exametrika/man/J15S3810.Rd |only exametrika-1.2.0/exametrika/man/J15S500.Rd | 8 exametrika-1.2.0/exametrika/man/J20S400.Rd | 8 exametrika-1.2.0/exametrika/man/J35S5000.Rd |only exametrika-1.2.0/exametrika/man/J35S515.Rd | 8 exametrika-1.2.0/exametrika/man/J5S10.Rd | 8 exametrika-1.2.0/exametrika/man/JCRR.Rd | 7 exametrika-1.2.0/exametrika/man/JointSampleSize.Rd | 7 exametrika-1.2.0/exametrika/man/LCA.Rd | 2 exametrika-1.2.0/exametrika/man/LDB.Rd | 2 exametrika-1.2.0/exametrika/man/LDLRA.Rd | 2 exametrika-1.2.0/exametrika/man/LD_param_est.Rd | 2 exametrika-1.2.0/exametrika/man/LRA.Rd | 2 exametrika-1.2.0/exametrika/man/LogisticModel.Rd | 2 exametrika-1.2.0/exametrika/man/MutualInformation.Rd | 7 exametrika-1.2.0/exametrika/man/OmegaCoefficient.Rd | 10 exametrika-1.2.0/exametrika/man/PSD_item_params.Rd | 2 exametrika-1.2.0/exametrika/man/PhiCoefficient.Rd | 7 exametrika-1.2.0/exametrika/man/RaschModel.Rd | 2 exametrika-1.2.0/exametrika/man/ScoreReport.Rd |only exametrika-1.2.0/exametrika/man/StrLearningGA_BNM.Rd | 2 exametrika-1.2.0/exametrika/man/StrLearningPBIL_BNM.Rd | 2 exametrika-1.2.0/exametrika/man/StrLearningPBIL_LDLRA.Rd | 2 exametrika-1.2.0/exametrika/man/StudentAnalysis.Rd | 2 exametrika-1.2.0/exametrika/man/TestFit.Rd | 2 exametrika-1.2.0/exametrika/man/TestFitSaturated.Rd | 2 exametrika-1.2.0/exametrika/man/TestInformationFunc.Rd | 2 exametrika-1.2.0/exametrika/man/TestStatistics.Rd | 37 + exametrika-1.2.0/exametrika/man/TetrachoricCorrelationMatrix.Rd | 7 exametrika-1.2.0/exametrika/man/ThreePLM.Rd | 2 exametrika-1.2.0/exametrika/man/TwoPLM.Rd | 2 exametrika-1.2.0/exametrika/man/asymprior.Rd | 2 exametrika-1.2.0/exametrika/man/calcFitIndices.Rd | 2 exametrika-1.2.0/exametrika/man/crr.Rd | 7 exametrika-1.2.0/exametrika/man/dataFormat.Rd | 44 + exametrika-1.2.0/exametrika/man/figures |only exametrika-1.2.0/exametrika/man/generate_category_labels.Rd |only exametrika-1.2.0/exametrika/man/longdataFormat.Rd |only exametrika-1.2.0/exametrika/man/maxParents_penalty.Rd | 2 exametrika-1.2.0/exametrika/man/nrs.Rd | 7 exametrika-1.2.0/exametrika/man/objective_function_IRT.Rd | 2 exametrika-1.2.0/exametrika/man/passage.Rd | 7 exametrika-1.2.0/exametrika/man/percentile.Rd | 7 exametrika-1.2.0/exametrika/man/plot.exametrika.Rd | 2 exametrika-1.2.0/exametrika/man/print.exametrika.Rd | 20 exametrika-1.2.0/exametrika/man/response_type_error.Rd |only exametrika-1.2.0/exametrika/man/slopeprior.Rd | 2 exametrika-1.2.0/exametrika/man/softmax.Rd | 2 exametrika-1.2.0/exametrika/man/sscore.Rd | 7 exametrika-1.2.0/exametrika/man/stanine.Rd | 7 exametrika-1.2.0/exametrika/man/tetrachoric.Rd | 2 145 files changed, 398 insertions(+), 346 deletions(-)
Title: 'DT' Extension for CRUD (Create, Read, Update, Delete)
Applications in 'shiny'
Description: The core of this package is a function eDT() which enhances DT::datatable() such that it can be used to interactively modify data in 'shiny'. By the use of generic 'dplyr' methods it supports many types of data storage, with relational databases ('dbplyr') being the main use case.
Author: Jasper Schelfhout [aut, cre],
Maxim Nazarov [rev],
Daan Seynaeve [rev],
Lennart Tuijnder [rev]
Maintainer: Jasper Schelfhout <jasper.schelfhout@openanalytics.eu>
Diff between editbl versions 1.0.5 dated 2024-05-21 and 1.1.0 dated 2025-01-31
editbl-1.0.5/editbl/man/createButtonsHTML.Rd |only editbl-1.1.0/editbl/DESCRIPTION | 12 editbl-1.1.0/editbl/MD5 | 49 editbl-1.1.0/editbl/NAMESPACE | 4 editbl-1.1.0/editbl/R/eDT.R | 553 +++++++--- editbl-1.1.0/editbl/R/utils.R | 20 editbl-1.1.0/editbl/README.md | 64 - editbl-1.1.0/editbl/build/vignette.rds |binary editbl-1.1.0/editbl/inst/NEWS | 4 editbl-1.1.0/editbl/inst/doc/howto_relational_db.html | 6 editbl-1.1.0/editbl/inst/doc/howto_relational_db_dm.html | 6 editbl-1.1.0/editbl/inst/doc/howto_row_level_access.R |only editbl-1.1.0/editbl/inst/doc/howto_row_level_access.html |only editbl-1.1.0/editbl/inst/doc/howto_row_level_access.rmd |only editbl-1.1.0/editbl/inst/doc/howto_switch_from_DT.html | 4 editbl-1.1.0/editbl/man/addButtons.Rd | 27 editbl-1.1.0/editbl/man/canXXXRowTemplate.Rd |only editbl-1.1.0/editbl/man/createButtons.Rd | 32 editbl-1.1.0/editbl/man/createDeleteButtonHTML.Rd |only editbl-1.1.0/editbl/man/createDeleteButtonHTML_shiny.Rd |only editbl-1.1.0/editbl/man/createEditButtonHTML.Rd |only editbl-1.1.0/editbl/man/createEditButtonHTML_shiny.Rd |only editbl-1.1.0/editbl/man/eDT.Rd | 38 editbl-1.1.0/editbl/man/eDTOutput.Rd | 3 editbl-1.1.0/editbl/man/evalCanDeleteRow.Rd |only editbl-1.1.0/editbl/man/evalCanEditRow.Rd |only editbl-1.1.0/editbl/man/initData.Rd | 16 editbl-1.1.0/editbl/man/overwriteDefaults.Rd |only editbl-1.1.0/editbl/tests/testthat/test-eDT.R | 41 editbl-1.1.0/editbl/tests/testthat/test-utils.R | 7 editbl-1.1.0/editbl/vignettes/howto_row_level_access.rmd |only editbl-1.1.0/editbl/vignettes/screenshots/howto_row_level_access_1.png |only editbl-1.1.0/editbl/vignettes/screenshots/howto_row_level_access_2.png |only 33 files changed, 669 insertions(+), 217 deletions(-)
Title: Spatial Ecology Miscellaneous Methods
Description: Collection of R functions and data sets for the support of spatial ecology analyses with a focus on pre, core and post modelling analyses of species distribution, niche quantification and community assembly. Written by current and former members and collaborators of the ecospat group of Antoine Guisan, Department of Ecology and Evolution (DEE) and Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Switzerland. Read Di Cola et al. (2016) <doi:10.1111/ecog.02671> for details.
Author: Olivier Broennimann [cre, aut, ctb],
Valeria Di Cola [aut, ctb],
Blaise Petitpierre [ctb],
Frank Breiner [ctb],
Daniel Scherrer [ctb],
Manuela D`Amen [ctb],
Christophe Randin [ctb],
Robin Engler [ctb],
Wim Hordijk [ctb],
Heidi Mod [ctb],
Julien Potti [...truncated...]
Maintainer: Olivier Broennimann <olivier.broennimann@unil.ch>
Diff between ecospat versions 4.1.1 dated 2024-07-04 and 4.1.2 dated 2025-01-31
DESCRIPTION | 19 +++++++++---------- MD5 | 8 ++++---- NEWS | 7 +++++++ R/ecospat.CCV.R | 2 +- inst/doc/vignette_ecospat_package.pdf |binary 5 files changed, 21 insertions(+), 15 deletions(-)
Title: Covariance Measure Tests for Conditional Independence
Description: Covariance measure tests for conditional independence testing
against conditional covariance and nonlinear conditional mean alternatives.
The package implements versions of the generalised covariance measure test
(Shah and Peters, 2020, <doi:10.1214/19-aos1857>) and projected covariance
measure test (Lundborg et al., 2023, <doi:10.1214/24-AOS2447>). The
tram-GCM test, for censored responses, is implemented including the Cox
model and survival forests (Kook et al., 2024,
<doi:10.1080/01621459.2024.2395588>). Application examples to variable
significance testing and modality selection can be found in Kook and
Lundborg (2024, <doi:10.1093/bib/bbae475>).
Author: Lucas Kook [aut, cre] ,
Anton Rask Lundborg [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between comets versions 0.1-0 dated 2024-12-06 and 0.1-1 dated 2025-01-31
DESCRIPTION | 29 +++++++----- MD5 | 16 +++--- NAMESPACE | 2 R/gcm.R | 69 +++++++++++++++++----------- R/regressions.R | 127 ++++++++++++++++++++++++++++++++++++++++++++++++++--- R/wgcm.R | 18 ++++--- man/gcm.Rd | 6 ++ man/regressions.Rd | 66 +++++++++++++++++++++++++-- man/wgcm.Rd | 11 ++++ 9 files changed, 277 insertions(+), 67 deletions(-)
Title: Model-Based Causal Feature Selection for General Response Types
Description: Extends invariant causal prediction (Peters et al., 2016,
<doi:10.1111/rssb.12167>) to generalized linear and transformation models
(Hothorn et al., 2018, <doi:10.1111/sjos.12291>).
The methodology is described in Kook et al. (2023,
<doi:10.1080/01621459.2024.2395588>).
Author: Lucas Kook [aut, cre] ,
Sorawit Saengkyongam [ctb],
Anton Rask Lundborg [ctb],
Torsten Hothorn [ctb],
Jonas Peters [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between tramicp versions 0.0-2 dated 2024-03-14 and 0.1-0 dated 2025-01-31
DESCRIPTION | 12 +++--- MD5 | 8 ++-- R/tests.R | 4 +- R/tramicp.R | 102 +++++++++++++++++++++++++++++++----------------------- build/partial.rdb |binary 5 files changed, 73 insertions(+), 53 deletions(-)
Title: Accesses Weather Data from the Iowa Environment Mesonet
Description: Allows to get weather data from Automated Surface Observing
System (ASOS) stations (airports) in the whole world thanks to the
Iowa Environment Mesonet website.
Author: Maelle Salmon [aut, cre] ,
Brooke Anderson [rev] ,
CHAI Project [fnd] ,
rOpenSci [fnd] ,
Daryl Herzmann [ctb],
Jonathan Elchison [aut]
Maintainer: Maelle Salmon <maelle.salmon@yahoo.se>
Diff between riem versions 0.3.2 dated 2024-07-26 and 1.0.0 dated 2025-01-31
riem-0.3.2/riem/tests/fixtures |only riem-0.3.2/riem/tests/testthat/fixtures/measures/mesonet.agron.iastate.edu |only riem-0.3.2/riem/tests/testthat/fixtures/warnings/mesonet.agron.iastate.edu |only riem-1.0.0/riem/DESCRIPTION | 15 riem-1.0.0/riem/MD5 | 37 riem-1.0.0/riem/NEWS.md | 10 riem-1.0.0/riem/R/measures.R | 91 riem-1.0.0/riem/man/riem_measures.Rd | 33 riem-1.0.0/riem/tests/testthat/_snaps/measures.md | 50 riem-1.0.0/riem/tests/testthat/fixtures/measures-all-reports |only riem-1.0.0/riem/tests/testthat/fixtures/measures-hfmetar |only riem-1.0.0/riem/tests/testthat/fixtures/measures-hfmetar-routine |only riem-1.0.0/riem/tests/testthat/fixtures/measures-hfmetar-specials |only riem-1.0.0/riem/tests/testthat/fixtures/measures-multiple-data |only riem-1.0.0/riem/tests/testthat/fixtures/measures-routine |only riem-1.0.0/riem/tests/testthat/fixtures/measures-specials |only riem-1.0.0/riem/tests/testthat/fixtures/measures/api |only riem-1.0.0/riem/tests/testthat/fixtures/measures2 |only riem-1.0.0/riem/tests/testthat/fixtures/networks/mesonet.agron.iastate.edu/api/1/networks.json.json | 1440 +++++----- riem-1.0.0/riem/tests/testthat/fixtures/stations/mesonet.agron.iastate.edu/api/1/network/IN__ASOS.json.json | 516 ++- riem-1.0.0/riem/tests/testthat/fixtures/stations/mesonet.agron.iastate.edu/api/1/networks.json.json | 1440 +++++----- riem-1.0.0/riem/tests/testthat/fixtures/warnings/api |only riem-1.0.0/riem/tests/testthat/helper-riem.R | 3 riem-1.0.0/riem/tests/testthat/test-measures.R | 309 +- 24 files changed, 2287 insertions(+), 1657 deletions(-)
Title: Fast Symbolic Multivariate Polynomials
Description: Fast manipulation of symbolic multivariate polynomials
using the 'Map' class of the Standard Template Library. The package
uses print and coercion methods from the 'mpoly' package but
offers speed improvements. It is comparable in speed to the 'spray'
package for sparse arrays, but retains the symbolic benefits of
'mpoly'. To cite the package in publications, use Hankin 2022
<doi:10.48550/ARXIV.2210.15991>. Uses 'disordR' discipline.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between mvp versions 1.0-14 dated 2023-03-19 and 1.0-18 dated 2025-01-31
mvp-1.0-14/mvp/inst/doc/mvp.pdf |only mvp-1.0-14/mvp/man/lose.Rd |only mvp-1.0-14/mvp/vignettes/poly.bib |only mvp-1.0-18/mvp/DESCRIPTION | 22 +++-- mvp-1.0-18/mvp/MD5 | 64 +++++++++-------- mvp-1.0-18/mvp/NAMESPACE | 6 - mvp-1.0-18/mvp/NEWS.md |only mvp-1.0-18/mvp/R/skimpy.R | 99 ++++++++++++++++++-------- mvp-1.0-18/mvp/R/skimpy_ops.R | 10 ++ mvp-1.0-18/mvp/README.md | 2 mvp-1.0-18/mvp/build/partial.rdb |binary mvp-1.0-18/mvp/build/vignette.rds |binary mvp-1.0-18/mvp/data |only mvp-1.0-18/mvp/inst/doc/mvp.R | 70 ++++++++++-------- mvp-1.0-18/mvp/inst/doc/mvp.Rmd | 116 +++++++++++++++---------------- mvp-1.0-18/mvp/inst/doc/mvp.html |only mvp-1.0-18/mvp/inst/mvp_stickermaker.R |only mvp-1.0-18/mvp/inst/symb.Rmd |only mvp-1.0-18/mvp/man/Ops.mvp.Rd | 10 ++ mvp-1.0-18/mvp/man/all.equal.Rd |only mvp-1.0-18/mvp/man/allvars.Rd | 5 + mvp-1.0-18/mvp/man/as.function.Rd | 2 mvp-1.0-18/mvp/man/coeffs.Rd | 11 ++ mvp-1.0-18/mvp/man/deriv.Rd | 31 +++++--- mvp-1.0-18/mvp/man/drop.Rd |only mvp-1.0-18/mvp/man/horner.Rd | 2 mvp-1.0-18/mvp/man/letters.Rd |only mvp-1.0-18/mvp/man/mvp.Rd | 11 ++ mvp-1.0-18/mvp/man/ooom.Rd | 2 mvp-1.0-18/mvp/man/rmvp.Rd | 22 ++++- mvp-1.0-18/mvp/man/series.Rd | 14 +-- mvp-1.0-18/mvp/man/subs.Rd | 14 +-- mvp-1.0-18/mvp/man/summary.Rd | 2 mvp-1.0-18/mvp/src/skimpy.cpp | 28 +++---- mvp-1.0-18/mvp/tests/testthat/test_aaa.R | 6 + mvp-1.0-18/mvp/tests/testthat/test_aac.R | 2 mvp-1.0-18/mvp/tests/testthat/test_aag.R | 26 ++++-- mvp-1.0-18/mvp/vignettes/mvp.Rmd | 116 +++++++++++++++---------------- mvp-1.0-18/mvp/vignettes/mvp.bib |only 39 files changed, 407 insertions(+), 286 deletions(-)
Title: 'GeoNetwork' API R Interface
Description: Provides an R interface to the 'GeoNetwork' API (<https://geonetwork-opensource.org/#api>) allowing to upload and publish metadata in a 'GeoNetwork' web-application and expose it to OGC CSW.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geonapi versions 0.7-2 dated 2024-03-21 and 0.8 dated 2025-01-31
DESCRIPTION | 12 +++--- MD5 | 47 ++++++++++++------------- NEWS.md | 12 ++++-- R/GNAbstractManager.R | 4 +- R/GNLegacyAPIManager.R | 26 +++++++++----- R/GNManager.R | 4 +- R/GNOpenAPIManager.R | 30 ++++++++++------ R/GNPriv.R | 8 ++-- R/GNPrivConfiguration.R | 6 +-- R/GNRESTRequest.R | 4 +- R/GNUtils.R | 4 +- R/GNVersion.R | 4 +- R/geonapi.R | 3 - README.md | 6 +-- man/GNAbstractManager.Rd | 4 +- man/GNLegacyAPIManager.Rd | 14 +++---- man/GNManager.Rd | 4 +- man/GNOpenAPIManager.Rd | 22 +++++------ man/GNPriv.Rd |only man/GNPrivConfiguration.Rd | 74 ++-------------------------------------- man/GNRESTRequest.Rd | 4 +- man/GNUtils.Rd | 4 +- man/GNVersion.Rd | 4 +- man/geonapi.Rd | 9 ++++ tests/testthat/test_GNManager.R | 2 - 25 files changed, 138 insertions(+), 173 deletions(-)
Title: Vaccine Extension Package for ADaM in 'R' Asset Library
Description: Programming vaccine specific Clinical Data Interchange
Standards Consortium (CDISC) compliant Analysis Data Model (ADaM)
datasets in 'R'. Flat model is followed as per
Center for Biologics Evaluation and Research (CBER) guidelines for
creating vaccine specific domains. ADaM datasets are a mandatory part
of any New Drug or Biologics License Application submitted to the
United States Food and Drug Administration (FDA). Analysis derivations
are implemented in accordance with the "Analysis Data Model
Implementation Guide" (CDISC Analysis Data Model Team (2021),
<https://www.cdisc.org/standards/foundational/adam/adamig-v1-3-release-package>).
The package is an extension package of the 'admiral' package.
Author: Sukalpo Saha [aut, cre],
Arjun Rubalingam [aut],
Ben Straub [aut],
Vikram S [aut],
Dhivya Kanagaraj [aut],
Federico Baratin [aut],
Yamini Purna Bollu [aut],
Ilse Augustyns [aut],
Kalyani Bodicherla [aut],
Hilde Delanghe [aut],
Lee Armishaw [aut],
Nee [...truncated...]
Maintainer: Sukalpo Saha <sukalpo.saha@pfizer.com>
Diff between admiralvaccine versions 0.3.0 dated 2024-08-29 and 0.4.0 dated 2025-01-31
DESCRIPTION | 9 MD5 | 142 NAMESPACE | 352 - NEWS.md | 148 R/admiralvaccine.R | 70 R/data.R | 78 R/derive_diam_to_sev_records.R | 404 +- R/derive_fever_records.R | 266 - R/derive_var_aval_adis.R | 240 - R/derive_vars_crit.R | 307 - R/derive_vars_event_flag.R | 342 - R/derive_vars_max_flag.R | 328 - R/derive_vars_merged_vaccine.R | 234 - R/derive_vars_params.R | 276 - R/derive_vars_vaxdt.R | 242 - R/global.R | 228 - R/post_process_reacto.R | 104 README.md | 220 - build/vignette.rds |binary inst/WORDLIST | 152 inst/doc/adce.R | 344 - inst/doc/adce.Rmd | 498 +- inst/doc/adce.html | 2810 +++++++------- inst/doc/adface.R | 708 +-- inst/doc/adface.Rmd | 1172 ++--- inst/doc/adface.html | 4542 +++++++++++------------ inst/doc/adis.R | 876 ++-- inst/doc/adis.Rmd | 1232 +++--- inst/doc/adis.html | 4271 ++++++++++----------- inst/doc/admiralvaccine.R | 78 inst/doc/admiralvaccine.Rmd | 204 - inst/doc/admiralvaccine.html | 836 ++-- inst/doc/adsl.R | 290 - inst/doc/adsl.Rmd | 602 +-- inst/doc/adsl.html | 1586 ++++---- inst/templates/ad_adce.R | 326 - inst/templates/ad_adface.R | 582 +- inst/templates/ad_adis.R | 742 +-- inst/templates/ad_adsl.R | 358 - man/admiralvaccine-package.Rd | 124 man/admiralvaccine_adce.Rd | 52 man/admiralvaccine_adface.Rd | 52 man/admiralvaccine_adis.Rd | 52 man/admiralvaccine_adsl.Rd | 52 man/derive_diam_to_sev_records.Rd | 296 - man/derive_fever_records.Rd | 158 man/derive_var_aval_adis.Rd | 204 - man/derive_vars_crit.Rd | 214 - man/derive_vars_event_flag.Rd | 234 - man/derive_vars_max_flag.Rd | 170 man/derive_vars_merged_vaccine.Rd | 182 man/derive_vars_params.Rd | 198 - man/derive_vars_vaxdt.Rd | 168 man/max_flag.Rd | 104 man/post_process_reacto.Rd | 104 man/roxygen/meta.R | 28 tests/testthat.R | 8 tests/testthat/test-derive_diam_to_sev_records.R | 784 +-- tests/testthat/test-derive_fever_records.R | 174 tests/testthat/test-derive_var_aval_adis.R | 756 +-- tests/testthat/test-derive_vars_crit.R | 441 +- tests/testthat/test-derive_vars_event_flag.R | 452 +- tests/testthat/test-derive_vars_max_flag.R | 326 - tests/testthat/test-derive_vars_merged_vaccine.R | 198 - tests/testthat/test-derive_vars_params.R | 406 +- tests/testthat/test-derive_vars_vaxdt.R | 224 - tests/testthat/test-post_process_reacto.R | 96 vignettes/adce.Rmd | 498 +- vignettes/adface.Rmd | 1172 ++--- vignettes/adis.Rmd | 1232 +++--- vignettes/admiralvaccine.Rmd | 204 - vignettes/adsl.Rmd | 602 +-- 72 files changed, 18109 insertions(+), 18055 deletions(-)
More information about admiralvaccine at CRAN
Permanent link
Title: Create Overlapping Stacked Plots
Description: Easily create overlapping grammar of graphics plots for scientific data visualization.
This style of plotting is particularly common in climatology and oceanography research communities.
Author: Sebastian Kopf [aut, cre, cph]
,
Tristan Caro [aut] ,
Jamie McFarlin [aut] ,
Jon Raberg [aut]
Maintainer: Sebastian Kopf <sebastian.kopf@colorado.edu>
Diff between ggstackplot versions 0.4 dated 2025-01-14 and 0.4.1 dated 2025-01-31
ggstackplot-0.4.1/ggstackplot/DESCRIPTION | 13 ggstackplot-0.4.1/ggstackplot/MD5 | 42 +-- ggstackplot-0.4.1/ggstackplot/NEWS.md | 8 ggstackplot-0.4.1/ggstackplot/R/ggstackplot.R | 33 +- ggstackplot-0.4.1/ggstackplot/R/helpers.R | 22 + ggstackplot-0.4.1/ggstackplot/README.md | 137 ++++++++-- ggstackplot-0.4.1/ggstackplot/build/vignette.rds |binary ggstackplot-0.4.1/ggstackplot/inst/doc/ggstackplot.R |only ggstackplot-0.4.1/ggstackplot/inst/doc/ggstackplot.Rmd |only ggstackplot-0.4.1/ggstackplot/inst/doc/ggstackplot.html |only ggstackplot-0.4.1/ggstackplot/man/figures/README-geodata-horizontal-1.png |only ggstackplot-0.4.1/ggstackplot/man/figures/README-geodata-horizontal-2-1.png |only ggstackplot-0.4.1/ggstackplot/man/ggstackplot-package.Rd | 11 ggstackplot-0.4.1/ggstackplot/man/ggstackplot.Rd | 9 ggstackplot-0.4.1/ggstackplot/tests/testthat/Rplots.pdf |only ggstackplot-0.4.1/ggstackplot/tests/testthat/_snaps/ggstackplot/horizontally-stacked-plot.svg | 64 ++-- ggstackplot-0.4.1/ggstackplot/tests/testthat/_snaps/ggstackplot/hstack-w-axis-defs-and-labs-in-template.svg | 44 +-- ggstackplot-0.4.1/ggstackplot/tests/testthat/_snaps/ggstackplot/hstack-w-axis-defs-in-template.svg | 44 +-- ggstackplot-0.4.1/ggstackplot/tests/testthat/_snaps/ggstackplot/vstack-w-axis-defs-in-template.svg | 54 +-- ggstackplot-0.4.1/ggstackplot/tests/testthat/test-ggstackplot.R | 2 ggstackplot-0.4.1/ggstackplot/vignettes/ggstackplot.Rmd |only ggstackplot-0.4/ggstackplot/inst/doc/features.R |only ggstackplot-0.4/ggstackplot/inst/doc/features.Rmd |only ggstackplot-0.4/ggstackplot/inst/doc/features.html |only ggstackplot-0.4/ggstackplot/man/figures/README-example-1.png |only ggstackplot-0.4/ggstackplot/man/figures/README-example2-1.png |only ggstackplot-0.4/ggstackplot/vignettes/features.Rmd |only ggstackplot-0.4/ggstackplot/vignettes/unused |only 28 files changed, 300 insertions(+), 183 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-16 0.0.9
Title: Analysis of Bivariate Survival Data Based on Copulas
Description: Simulating bivariate survival data from copula models.
Estimation of the association parameter in copula models.
Two different ways to estimate the association parameter in copula models are implemented.
A goodness-of-fit test for a given copula model is implemented.
See Emura, Lin and Wang (2010) <doi:10.1016/j.csda.2010.03.013> for details.
Author: Takeshi Emura [aut, cre]
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between Copula.surv versions 1.7 dated 2024-10-26 and 1.8 dated 2025-01-31
DESCRIPTION | 8 ++++---- MD5 | 4 +++- R/Weib.reg.Frank.R |only man/Weib.reg.Frank.Rd |only 4 files changed, 7 insertions(+), 5 deletions(-)
Title: Tail Classifier
Description: The function TailClassifier() suggests one of the following types of tail for your discrete data: 1) Power decaying tail; 2) Sub-exponential decaying tail; and 3) Near-exponential decaying tail. The function also provides an estimate of the parameter for the classified-distribution as a reference.
Author: Jialin Zhang [aut, cph, cre]
Maintainer: Jialin Zhang (JZ) <jzhang@math.msstate.edu>
Diff between TailClassifier versions 0.1.1 dated 2023-10-30 and 0.1.2 dated 2025-01-31
DESCRIPTION | 13 +++++++----- MD5 | 6 ++--- R/TailClassifier.r | 52 ++++++++++++++++++++++++++++++++++++++------------ man/TailClassifier.Rd | 13 ++++++++++-- 4 files changed, 62 insertions(+), 22 deletions(-)
More information about TailClassifier at CRAN
Permanent link
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph],
Balazs Banfai [ctb],
Ben Bolker [ctb],
Paul Buerkner [ctb],
Iago Gine-Vazquez [ctb],
Maxime Herve [ctb],
Maarten Jung [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Julia Piaskowski [ctb],
Hannes Riebl [ctb],
Hen [...truncated...]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.10.6 dated 2024-12-12 and 1.10.7 dated 2025-01-31
DESCRIPTION | 8 - MD5 | 112 +++++++++--------- NAMESPACE | 1 NEWS.md | 20 +++ R/emmGrid-methods.R | 150 ++++++++++-------------- R/emmeans-package.R | 4 R/emmeans.R | 48 +++++++ R/rbind.R | 4 R/ref-grid.R | 225 +++++++++++++++++++++++++++---------- inst/doc/AQuickStart.Rmd | 6 inst/doc/AQuickStart.html | 14 +- inst/doc/FAQs.Rmd | 15 ++ inst/doc/FAQs.html | 23 +++ inst/doc/basics.R | 24 +-- inst/doc/basics.Rmd | 2 inst/doc/basics.html | 26 ++-- inst/doc/comparisons.R | 2 inst/doc/comparisons.Rmd | 4 inst/doc/comparisons.html | 22 +-- inst/doc/confidence-intervals.R | 4 inst/doc/confidence-intervals.Rmd | 6 inst/doc/confidence-intervals.html | 16 +- inst/doc/interactions.html | 26 ++-- inst/doc/messy-data.R | 10 - inst/doc/messy-data.Rmd | 2 inst/doc/messy-data.html | 18 +- inst/doc/models.Rmd | 2 inst/doc/models.html | 6 inst/doc/predictions.R | 4 inst/doc/predictions.html | 6 inst/doc/re-engineering-clds.html | 4 inst/doc/sophisticated.R | 28 ++-- inst/doc/sophisticated.html | 12 - inst/doc/transformations.R | 34 ++--- inst/doc/transformations.Rmd | 4 inst/doc/transformations.html | 22 ++- inst/doc/utilities.R | 8 - inst/doc/utilities.html | 4 inst/doc/vignette-topics.Rmd | 8 - inst/doc/vignette-topics.html | 12 - inst/doc/xplanations.R | 2 inst/doc/xplanations.html | 14 +- inst/doc/xtending.R | 2 inst/doc/xtending.Rmd | 2 inst/doc/xtending.html | 10 - man/emmeans.Rd | 16 ++ man/ref_grid.Rd | 48 ++++--- vignettes/AQuickStart.Rmd | 6 vignettes/FAQs.Rmd | 15 ++ vignettes/basics.Rmd | 2 vignettes/comparisons.Rmd | 4 vignettes/confidence-intervals.Rmd | 6 vignettes/messy-data.Rmd | 2 vignettes/models.Rmd | 2 vignettes/transformations.Rmd | 4 vignettes/vignette-topics.Rmd | 8 - vignettes/xtending.Rmd | 2 57 files changed, 659 insertions(+), 432 deletions(-)
Title: Nonnegative Garrote Method Incorporating Hierarchical
Relationships
Description: An implementation of the nonnegative garrote method that incorporates hierarchical relationships among variables. The core function, HiGarrote(), offers an automated approach for analyzing experiments while respecting hierarchical structures among effects. For methodological details, refer to Yu and Joseph (2024) <doi:10.48550/arXiv.2411.01383>. This work is supported by U.S. National Science Foundation grant DMS-2310637.
Author: Wei-Yang Yu [aut, cre],
V. Roshan Joseph [aut]
Maintainer: Wei-Yang Yu <wyu322@gatech.edu>
Diff between HiGarrote versions 1.0.1 dated 2025-01-29 and 1.0.2 dated 2025-01-30
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 9 ++++++++- R/HiGarrote.R | 2 +- R/RcppExports.R | 4 ---- src/RcppExports.cpp | 12 ------------ src/lib.cpp | 14 +++++++------- 7 files changed, 27 insertions(+), 36 deletions(-)
Title: Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'
Description: Simplifies custom 'CSS' styling of both 'shiny' and
'rmarkdown' via 'Bootstrap' 'Sass'. Supports 'Bootstrap' 3, 4 and 5 as
well as their various 'Bootswatch' themes. An interactive widget is
also provided for previewing themes in real time.
Author: Carson Sievert [aut, cre] ,
Joe Cheng [aut],
Garrick Aden-Buie [aut] ,
Posit Software, PBC [cph, fnd],
Bootstrap contributors [ctb] ,
Twitter, Inc [cph] ,
Javi Aguilar [ctb, cph] ,
Thomas Park [ctb, cph] ,
PayPal [ctb, cph]
Maintainer: Carson Sievert <carson@posit.co>
Diff between bslib versions 0.8.0 dated 2024-07-29 and 0.9.0 dated 2025-01-30
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Title: Significance Level for Random Forest Impurity Importance Scores
Description: Sets a significance level for Random Forest MDI (Mean Decrease in Impurity, Gini or
sum of squares) variable importance scores, using an empirical Bayes approach.
See Dunne et al. (2022) <doi:10.1101/2022.04.06.487300>.
Author: Robert Dunne [aut, cre]
Maintainer: Robert Dunne <rob.dunne@csiro.au>
Diff between RFlocalfdr versions 0.8.5 dated 2023-11-09 and 0.9 dated 2025-01-30
RFlocalfdr-0.8.5/RFlocalfdr/tests |only RFlocalfdr-0.9/RFlocalfdr/DESCRIPTION | 12 RFlocalfdr-0.9/RFlocalfdr/MD5 | 60 RFlocalfdr-0.9/RFlocalfdr/NEWS |only RFlocalfdr-0.9/RFlocalfdr/R/data.R | 2 RFlocalfdr-0.9/RFlocalfdr/R/determine.C.R | 6 RFlocalfdr-0.9/RFlocalfdr/R/determine_cutoff.R | 4 RFlocalfdr-0.9/RFlocalfdr/R/f.fit.R | 2 RFlocalfdr-0.9/RFlocalfdr/R/fit.to.data.set.R | 4 RFlocalfdr-0.9/RFlocalfdr/R/fit.to.data.set.wrapper.R | 4 RFlocalfdr-0.9/RFlocalfdr/R/local.fdr.R | 4 RFlocalfdr-0.9/RFlocalfdr/R/my.dsn.R | 58 RFlocalfdr-0.9/RFlocalfdr/R/my.test1fun.R | 2 RFlocalfdr-0.9/RFlocalfdr/R/my_PIMP.R | 2 RFlocalfdr-0.9/RFlocalfdr/R/my_ranger_PIMP.R | 2 RFlocalfdr-0.9/RFlocalfdr/R/plotQ.R | 10 RFlocalfdr-0.9/RFlocalfdr/R/run.it.importances.R | 4 RFlocalfdr-0.9/RFlocalfdr/R/significant.genes.R | 4 RFlocalfdr-0.9/RFlocalfdr/build/vignette.rds |binary RFlocalfdr-0.9/RFlocalfdr/inst/doc/Smoking.R | 269 +- RFlocalfdr-0.9/RFlocalfdr/inst/doc/Smoking.Rmd | 36 RFlocalfdr-0.9/RFlocalfdr/inst/doc/Smoking.html | 160 - RFlocalfdr-0.9/RFlocalfdr/inst/doc/simulated.R | 1296 +++++++--- RFlocalfdr-0.9/RFlocalfdr/inst/doc/simulated.Rmd | 1036 +++++++ RFlocalfdr-0.9/RFlocalfdr/inst/doc/simulated.html | 1110 +++++--- RFlocalfdr-0.9/RFlocalfdr/man/determine.C.Rd | 2 RFlocalfdr-0.9/RFlocalfdr/man/my.dsn.Rd | 2 RFlocalfdr-0.9/RFlocalfdr/man/plotQ.Rd | 5 RFlocalfdr-0.9/RFlocalfdr/vignettes/Smoking.Rmd | 36 RFlocalfdr-0.9/RFlocalfdr/vignettes/paper.bib | 139 + RFlocalfdr-0.9/RFlocalfdr/vignettes/simulated.Rmd | 1036 +++++++ RFlocalfdr-0.9/RFlocalfdr/vignettes/supp_figures/simulation2_zz2.png |only 32 files changed, 4176 insertions(+), 1131 deletions(-)
Title: Graphical User Interface with Integrated 'Diagrammer' for
'Lavaan'
Description: Provides a graphical user interface with an
integrated diagrammer for latent variables from the 'lavaan' package.
It offers two core functions: first, lavaangui() launches a web application
that allows users to specify models by drawing path diagrams, fitting them,
assessing model fit, and more; second, plot_lavaan() creates
interactive path diagrams from models specified in 'lavaan'.
Karch (2024) <doi: 10.31234/osf.io/f4ary> contains a tutorial.
Author: Julian D. Karch [aut, cre, cph]
Maintainer: Julian D. Karch <j.d.karch@fsw.leidenuniv.nl>
Diff between lavaangui versions 0.2.1 dated 2024-12-05 and 0.2.3 dated 2025-01-30
lavaangui-0.2.1/lavaangui/inst/www/assets/index-43dbfde1.js |only lavaangui-0.2.3/lavaangui/DESCRIPTION | 11 +++++------ lavaangui-0.2.3/lavaangui/MD5 | 10 +++++----- lavaangui-0.2.3/lavaangui/NEWS.md | 10 ++++++++++ lavaangui-0.2.3/lavaangui/R/serverLavaanRun.R | 7 +++++++ lavaangui-0.2.3/lavaangui/inst/www/assets/index-cd429c6f.js |only lavaangui-0.2.3/lavaangui/inst/www/index.html | 2 +- 7 files changed, 28 insertions(+), 12 deletions(-)
Title: Dendrochronology Program Library in R
Description: Perform tree-ring analyses such as detrending, chronology
building, and cross dating. Read and write standard file formats
used in dendrochronology.
Author: Andy Bunn [aut, cph, cre, trl],
Mikko Korpela [aut, cph, trl],
Franco Biondi [aut, cph],
Filipe Campelo [aut, cph],
Stefan Klesse [aut, cph],
Pierre Merian [aut, cph],
Fares Qeadan [aut, cph],
Christian Zang [aut, cph],
Allan Buras [ctb],
Alice Cecil [...truncated...]
Maintainer: Andy Bunn <bunna@wwu.edu>
Diff between dplR versions 1.7.7 dated 2024-06-01 and 1.7.8 dated 2025-01-30
dplR-1.7.7/dplR/R/powt.series.R |only dplR-1.7.7/dplR/man/dplR-defunct.Rd |only dplR-1.7.7/dplR/man/ffcsaps.Rd |only dplR-1.7.8/dplR/ChangeLog | 42 ++ dplR-1.7.8/dplR/DESCRIPTION | 12 dplR-1.7.8/dplR/MD5 | 53 +-- dplR-1.7.8/dplR/NAMESPACE | 6 dplR-1.7.8/dplR/R/capPOWT.R |only dplR-1.7.8/dplR/R/capPOWTseries.R |only dplR-1.7.8/dplR/R/caps.R | 6 dplR-1.7.8/dplR/R/detrend.series.R | 14 dplR-1.7.8/dplR/R/ffcsaps.R | 461 +++++++++++++++++++---------- dplR-1.7.8/dplR/R/powt.R | 104 ++---- dplR-1.7.8/dplR/R/read.fh.R | 3 dplR-1.7.8/dplR/R/rwl.stats.R | 9 dplR-1.7.8/dplR/R/universalPOWT.R |only dplR-1.7.8/dplR/man/caps.Rd | 13 dplR-1.7.8/dplR/man/chron.ci.Rd | 2 dplR-1.7.8/dplR/man/detrend.Rd | 4 dplR-1.7.8/dplR/man/dplR-deprecated.Rd |only dplR-1.7.8/dplR/man/glk.Rd | 7 dplR-1.7.8/dplR/man/latexify.Rd | 2 dplR-1.7.8/dplR/man/pass.filt.Rd | 4 dplR-1.7.8/dplR/man/powt.Rd | 99 ++++-- dplR-1.7.8/dplR/man/rasterPlot.Rd | 2 dplR-1.7.8/dplR/man/rwl.stats.Rd | 6 dplR-1.7.8/dplR/man/uuid.gen.Rd | 2 dplR-1.7.8/dplR/src/dplR.c | 16 - dplR-1.7.8/dplR/src/dplR.h | 6 dplR-1.7.8/dplR/src/redfit.c | 12 dplR-1.7.8/dplR/tests/testthat/test-dplR.R | 24 - 31 files changed, 587 insertions(+), 322 deletions(-)
Title: High-Level Modeling Functions with 'torch'
Description: Provides high-level modeling functions to define and train
models using the 'torch' R package. Models include linear, logistic,
and multinomial regression as well as multilayer perceptrons.
Author: Max Kuhn [aut, cre] ,
Daniel Falbel [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between brulee versions 0.3.0 dated 2024-02-14 and 0.4.0 dated 2025-01-30
brulee-0.3.0/brulee/R/tunable.R |only brulee-0.3.0/brulee/man/brulee-internal.Rd |only brulee-0.4.0/brulee/DESCRIPTION | 10 brulee-0.4.0/brulee/MD5 | 76 brulee-0.4.0/brulee/NAMESPACE | 11 brulee-0.4.0/brulee/NEWS.md | 8 brulee-0.4.0/brulee/R/aaa.R | 1 brulee-0.4.0/brulee/R/activation.R | 8 brulee-0.4.0/brulee/R/autoplot.R | 2 brulee-0.4.0/brulee/R/checks.R | 351 +-- brulee-0.4.0/brulee/R/coef.R | 2 brulee-0.4.0/brulee/R/import-standalone-obj-type.R |only brulee-0.4.0/brulee/R/import-standalone-types-check.R |only brulee-0.4.0/brulee/R/linear_reg-fit.R | 9 brulee-0.4.0/brulee/R/linear_reg-predict.R | 2 brulee-0.4.0/brulee/R/logistic_reg-fit.R | 6 brulee-0.4.0/brulee/R/logistic_reg-predict.R | 2 brulee-0.4.0/brulee/R/mlp-fit.R | 1321 +++++++----- brulee-0.4.0/brulee/R/mlp-predict.R | 2 brulee-0.4.0/brulee/R/multinomial_reg-fit.R | 6 brulee-0.4.0/brulee/R/multinomial_reg-predict.R | 2 brulee-0.4.0/brulee/R/schedulers.R | 37 brulee-0.4.0/brulee/inst/WORDLIST | 2 brulee-0.4.0/brulee/man/brulee-autoplot.Rd | 2 brulee-0.4.0/brulee/man/brulee-coefs.Rd | 2 brulee-0.4.0/brulee/man/brulee_linear_reg.Rd | 5 brulee-0.4.0/brulee/man/brulee_logistic_reg.Rd | 2 brulee-0.4.0/brulee/man/brulee_mlp.Rd | 124 + brulee-0.4.0/brulee/man/brulee_multinomial_reg.Rd | 2 brulee-0.4.0/brulee/man/predict.brulee_linear_reg.Rd | 2 brulee-0.4.0/brulee/man/predict.brulee_logistic_reg.Rd | 2 brulee-0.4.0/brulee/man/predict.brulee_mlp.Rd | 2 brulee-0.4.0/brulee/man/predict.brulee_multinomial_reg.Rd | 2 brulee-0.4.0/brulee/man/schedule_decay_time.Rd | 31 brulee-0.4.0/brulee/tests/testthat/_snaps/checks.md |only brulee-0.4.0/brulee/tests/testthat/_snaps/mlp-regression.md | 2 brulee-0.4.0/brulee/tests/testthat/_snaps/overflow.md |only brulee-0.4.0/brulee/tests/testthat/test-checks.R |only brulee-0.4.0/brulee/tests/testthat/test-mlp-binary.R | 16 brulee-0.4.0/brulee/tests/testthat/test-mlp-multinomial.R | 2 brulee-0.4.0/brulee/tests/testthat/test-mlp-regression.R | 107 brulee-0.4.0/brulee/tests/testthat/test-overflow.R |only brulee-0.4.0/brulee/tests/testthat/test-schedulers.R | 4 43 files changed, 1356 insertions(+), 809 deletions(-)
Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <doi:10.48550/arXiv.1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Daniel Falbel [aut, cre, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
Hamada S. Badr [ctb],
Sebastian Fischer [ctb],
Maximilian Pichler [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torch versions 0.13.0 dated 2024-05-21 and 0.14.0 dated 2025-01-30
torch-0.13.0/torch/tools/torchgen/inst/declaration/Declarations-2.0.1.yaml |only torch-0.13.0/torch/vignettes/model.pt |only torch-0.13.0/torch/vignettes/tensor.pt |only torch-0.14.0/torch/DESCRIPTION | 56 torch-0.14.0/torch/MD5 | 280 torch-0.14.0/torch/NAMESPACE | 12 torch-0.14.0/torch/NEWS.md | 21 torch-0.14.0/torch/R/RcppExports.R | 1552 ++- torch-0.14.0/torch/R/autograd.R | 2 torch-0.14.0/torch/R/compilation_unit.R | 2 torch-0.14.0/torch/R/conditions.R | 14 torch-0.14.0/torch/R/gen-method.R | 153 torch-0.14.0/torch/R/gen-namespace-docs.R | 26 torch-0.14.0/torch/R/gen-namespace.R | 2493 ++++ torch-0.14.0/torch/R/generator.R | 4 torch-0.14.0/torch/R/ignite.R |only torch-0.14.0/torch/R/indexing.R | 2 torch-0.14.0/torch/R/install.R | 16 torch-0.14.0/torch/R/lantern_sync.R | 8 torch-0.14.0/torch/R/linalg.R | 10 torch-0.14.0/torch/R/nn.R | 21 torch-0.14.0/torch/R/nnf-activation.R | 12 torch-0.14.0/torch/R/optim-adadelta.R | 1 torch-0.14.0/torch/R/optim-adagrad.R | 43 torch-0.14.0/torch/R/optim-adam.R | 44 torch-0.14.0/torch/R/optim-adamw.R | 73 torch-0.14.0/torch/R/optim-asgd.R | 1 torch-0.14.0/torch/R/optim-lbfgs.R | 21 torch-0.14.0/torch/R/optim-lr_scheduler.R | 2 torch-0.14.0/torch/R/optim-rmsprop.R | 35 torch-0.14.0/torch/R/optim-sgd.R | 39 torch-0.14.0/torch/R/optim.R | 66 torch-0.14.0/torch/R/package.R | 4 torch-0.14.0/torch/R/positron.R |only torch-0.14.0/torch/R/save.R | 9 torch-0.14.0/torch/R/script_module.R | 73 torch-0.14.0/torch/R/tensor.R | 7 torch-0.14.0/torch/R/trace.R | 136 torch-0.14.0/torch/R/type-info.R | 14 torch-0.14.0/torch/R/utils.R | 6 torch-0.14.0/torch/build/partial.rdb |binary torch-0.14.0/torch/build/vignette.rds |binary torch-0.14.0/torch/configure.win | 2 torch-0.14.0/torch/inst/doc/distributions.R | 2 torch-0.14.0/torch/inst/doc/distributions.html | 97 torch-0.14.0/torch/inst/doc/extending-autograd.R | 2 torch-0.14.0/torch/inst/doc/extending-autograd.html | 5 torch-0.14.0/torch/inst/doc/indexing.R | 2 torch-0.14.0/torch/inst/doc/indexing.Rmd | 2 torch-0.14.0/torch/inst/doc/indexing.html | 162 torch-0.14.0/torch/inst/doc/installation.R | 2 torch-0.14.0/torch/inst/doc/installation.Rmd | 8 torch-0.14.0/torch/inst/doc/installation.html | 8 torch-0.14.0/torch/inst/doc/loading-data.R | 2 torch-0.14.0/torch/inst/doc/loading-data.html | 75 torch-0.14.0/torch/inst/doc/python-to-r.R | 2 torch-0.14.0/torch/inst/doc/serialization.R | 2 torch-0.14.0/torch/inst/doc/serialization.html | 23 torch-0.14.0/torch/inst/doc/tensor-creation.R | 2 torch-0.14.0/torch/inst/doc/tensor-creation.html | 57 torch-0.14.0/torch/inst/doc/torchscript.R | 2 torch-0.14.0/torch/inst/doc/torchscript.Rmd | 18 torch-0.14.0/torch/inst/doc/torchscript.html | 132 torch-0.14.0/torch/inst/doc/using-autograd.R | 2 torch-0.14.0/torch/inst/doc/using-autograd.html | 87 torch-0.14.0/torch/inst/include/lantern/lantern.h | 2144 ++-- torch-0.14.0/torch/inst/include/lantern/types.h | 3 torch-0.14.0/torch/inst/include/torch_deleters.h | 5 torch-0.14.0/torch/inst/include/torch_types.h | 58 torch-0.14.0/torch/inst/include/utils.h | 23 torch-0.14.0/torch/inst/po |only torch-0.14.0/torch/man/OptimizerIgnite.Rd |only torch-0.14.0/torch/man/jit_serialize.Rd |only torch-0.14.0/torch/man/jit_trace.Rd | 16 torch-0.14.0/torch/man/jit_trace_module.Rd | 11 torch-0.14.0/torch/man/jit_unserialize.Rd |only torch-0.14.0/torch/man/linalg_cholesky.Rd | 10 torch-0.14.0/torch/man/linalg_cholesky_ex.Rd | 10 torch-0.14.0/torch/man/linalg_det.Rd | 12 torch-0.14.0/torch/man/linalg_eig.Rd | 10 torch-0.14.0/torch/man/linalg_eigh.Rd | 12 torch-0.14.0/torch/man/linalg_eigvals.Rd | 10 torch-0.14.0/torch/man/linalg_eigvalsh.Rd | 10 torch-0.14.0/torch/man/linalg_householder_product.Rd | 12 torch-0.14.0/torch/man/linalg_inv.Rd | 10 torch-0.14.0/torch/man/linalg_inv_ex.Rd | 10 torch-0.14.0/torch/man/linalg_lstsq.Rd | 12 torch-0.14.0/torch/man/linalg_matrix_norm.Rd | 14 torch-0.14.0/torch/man/linalg_matrix_power.Rd | 12 torch-0.14.0/torch/man/linalg_matrix_rank.Rd | 12 torch-0.14.0/torch/man/linalg_multi_dot.Rd | 12 torch-0.14.0/torch/man/linalg_norm.Rd | 14 torch-0.14.0/torch/man/linalg_pinv.Rd | 12 torch-0.14.0/torch/man/linalg_qr.Rd | 12 torch-0.14.0/torch/man/linalg_slogdet.Rd | 12 torch-0.14.0/torch/man/linalg_solve.Rd | 10 torch-0.14.0/torch/man/linalg_solve_triangular.Rd | 10 torch-0.14.0/torch/man/linalg_svd.Rd | 10 torch-0.14.0/torch/man/linalg_svdvals.Rd | 10 torch-0.14.0/torch/man/linalg_tensorinv.Rd | 12 torch-0.14.0/torch/man/linalg_tensorsolve.Rd | 14 torch-0.14.0/torch/man/linalg_vector_norm.Rd | 14 torch-0.14.0/torch/man/optim_ignite_adagrad.Rd |only torch-0.14.0/torch/man/optim_ignite_adam.Rd |only torch-0.14.0/torch/man/optim_ignite_adamw.Rd |only torch-0.14.0/torch/man/optim_ignite_rmsprop.Rd |only torch-0.14.0/torch/man/optim_ignite_sgd.Rd |only torch-0.14.0/torch/man/optim_lbfgs.Rd | 6 torch-0.14.0/torch/man/optim_required.Rd | 2 torch-0.14.0/torch/man/optimizer_ignite.Rd |only torch-0.14.0/torch/man/torch_can_cast.Rd | 4 torch-0.14.0/torch/man/torch_take_along_dim.Rd |only torch-0.14.0/torch/po |only torch-0.14.0/torch/src/Makevars.in | 4 torch-0.14.0/torch/src/RcppExports.cpp | 5165 +++++++--- torch-0.14.0/torch/src/autograd.cpp | 24 torch-0.14.0/torch/src/codegen.cpp | 34 torch-0.14.0/torch/src/gen-namespace.cpp | 1768 ++- torch-0.14.0/torch/src/ignite.cpp |only torch-0.14.0/torch/src/indexing.cpp | 58 torch-0.14.0/torch/src/script_module.cpp | 21 torch-0.14.0/torch/src/tensor.cpp | 5 torch-0.14.0/torch/src/torch_api.cpp | 114 torch-0.14.0/torch/src/trace.cpp | 8 torch-0.14.0/torch/tests/testthat/_snaps/script_module.md | 28 torch-0.14.0/torch/tests/testthat/assets/linear.pt |binary torch-0.14.0/torch/tests/testthat/helper-ignite.R |only torch-0.14.0/torch/tests/testthat/helper-optim.R | 22 torch-0.14.0/torch/tests/testthat/test-cuda.R | 7 torch-0.14.0/torch/tests/testthat/test-distributions-constraints.R | 2 torch-0.14.0/torch/tests/testthat/test-ignite.R |only torch-0.14.0/torch/tests/testthat/test-indexing.R | 46 torch-0.14.0/torch/tests/testthat/test-jit-ops.R | 14 torch-0.14.0/torch/tests/testthat/test-message-translations.R |only torch-0.14.0/torch/tests/testthat/test-nn-multihead-attention.R | 8 torch-0.14.0/torch/tests/testthat/test-nn-normalization.R | 2 torch-0.14.0/torch/tests/testthat/test-nn-rnn.R | 2 torch-0.14.0/torch/tests/testthat/test-nn.R | 5 torch-0.14.0/torch/tests/testthat/test-optim-sgd.R | 36 torch-0.14.0/torch/tests/testthat/test-save.R | 7 torch-0.14.0/torch/tests/testthat/test-script_module.R | 8 torch-0.14.0/torch/tests/testthat/test-trace.R | 52 torch-0.14.0/torch/tests/testthat/test-utils-data-dataloader.R | 4 torch-0.14.0/torch/tests/testthat/tracedmodule.pt |binary torch-0.14.0/torch/tools/buildlantern.R | 6 torch-0.14.0/torch/tools/torchgen/R/cpp.R | 103 torch-0.14.0/torch/tools/torchgen/R/r.R | 16 torch-0.14.0/torch/tools/torchgen/R/utils.R | 2 torch-0.14.0/torch/tools/torchgen/inst/declaration/Declarations-2.5.1.yaml |only torch-0.14.0/torch/vignettes/indexing.Rmd | 2 torch-0.14.0/torch/vignettes/installation.Rmd | 8 torch-0.14.0/torch/vignettes/torchscript.Rmd | 18 152 files changed, 12182 insertions(+), 3941 deletions(-)
Title: Interact with Large Language Models in 'RStudio'
Description: Enables user interactivity with large-language models ('LLM') inside
the 'RStudio' integrated development environment (IDE). The user can
interact with the model using the 'shiny' app included in this package, or
directly in the 'R' console. It comes with back-ends for 'OpenAI', 'GitHub'
'Copilot', and 'LlamaGPT'.
Author: Edgar Ruiz [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Edgar Ruiz <edgar@posit.co>
Diff between chattr versions 0.2.0 dated 2024-07-29 and 0.2.1 dated 2025-01-30
DESCRIPTION | 10 - MD5 | 26 +-- NEWS.md | 4 R/chattr-use.R | 1 inst/doc/backend-databricks.html | 2 inst/doc/backend-llamagpt.R | 2 inst/doc/backend-llamagpt.html | 2 inst/doc/copilot-chat.html | 2 inst/doc/openai-gpt.html | 2 inst/doc/other-interfaces.html | 2 inst/doc/prompt_defaults.html | 206 +++++++++++++++---------------- tests/testthat/_snaps/chattr-use.md | 7 + tests/testthat/test-backend-databricks.R | 2 tests/testthat/test-chattr-use.R | 18 ++ 14 files changed, 158 insertions(+), 128 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') for
temporal data in an data- and model-oriented format. The 'tsibble'
provides tools to easily manipulate and analyse temporal data, such as
filling in time gaps and aggregating over calendar periods.
Author: Earo Wang [aut, cre] ,
Di Cook [aut, ths] ,
Rob Hyndman [aut, ths] ,
Mitchell O'Hara-Wild [aut] ,
Tyler Smith [ctb],
Wil Davis [ctb]
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 1.1.5 dated 2024-06-27 and 1.1.6 dated 2025-01-30
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/doc/faq.html | 2 +- inst/doc/implicit-na.R | 10 +++++----- inst/doc/implicit-na.html | 4 ++-- inst/doc/intro-tsibble.html | 2 +- tests/testthat/test-tsibble.R | 1 + 7 files changed, 20 insertions(+), 19 deletions(-)
Title: 'ShinyItemAnalysis' Modules Development Toolkit
Description: A comprehensive suite of functions designed for constructing
and managing 'ShinyItemAnalysis' modules, supplemented with detailed
guides, ready-to-use templates, linters, and tests. This package
allows developers to seamlessly create and integrate one or more
modules into their existing packages or to start a new module project
from scratch.
Author: Jan Netik [cre, aut] ,
Patricia Martinkova [aut]
Maintainer: Jan Netik <netik@cs.cas.cz>
Diff between SIAtools versions 0.1.1 dated 2024-06-20 and 0.1.2 dated 2025-01-30
DESCRIPTION | 8 ++++---- MD5 | 29 +++++++++++++++-------------- NAMESPACE | 5 +++++ NEWS.md | 13 +++++++++++++ R/create_module_project.R | 4 ++-- R/preview_module.R | 29 +++++++++++++++++++++-------- R/sysdata.rda |binary R/utils.R | 36 +++++++++++++++++++++++++++++++++--- build/vignette.rds |binary inst/WORDLIST | 4 +--- inst/doc/getting_started.R | 6 +++--- inst/doc/getting_started.html | 5 +---- inst/doc/imports.R | 14 +++++++------- inst/doc/imports.html | 3 +-- man/sm_list_available.Rd |only tests/testthat/test-add_module.R | 5 +++-- 16 files changed, 109 insertions(+), 52 deletions(-)
Title: Association Among Disease Counts and Socio-Environmental Factors
Description: Estimation of association between disease or death counts (e.g. COVID-19) and socio-environmental risk factors using a zero-inflated Bayesian spatiotemporal model. Non-spatiotemporal models and/or models without zero-inflation are also included for comparison. Functions to produce corresponding maps are also included. See Chakraborty et al. (2022) <doi:10.1007/s13253-022-00487-1> for more details on the method.
Author: Suman Majumder [cre, aut, cph],
Yoon-Bae Jun [aut, cph],
Sounak Chakraborty [ctb],
Chae-Young Lim [ctb],
Tanujit Dey [ctb]
Maintainer: Suman Majumder <smajumd2@gmail.com>
Diff between BSTZINB versions 1.0.0 dated 2024-10-31 and 2.0.0 dated 2025-01-30
DESCRIPTION | 16 - MD5 | 54 ++-- NAMESPACE | 84 +++--- NEWS.md | 16 - build/vignette.rds |binary inst/doc/BSTZINB_vignette.R | 14 - inst/doc/BSTZINB_vignette.Rmd | 12 inst/doc/BSTZINB_vignette.html | 490 +++++++++++++++++-------------------- man/BNB.Rd | 88 +++--- man/BSTNB.Rd | 88 +++--- man/BSTZINB.Rd | 92 +++--- man/BZINB.Rd | 88 +++--- man/ResultTableSummary.Rd | 64 ++-- man/ResultTableSummary2.Rd | 90 +++--- man/TimetrendCurve.Rd | 90 +++--- man/USAcities.Rd | 38 +- man/USDmapCount.Rd | 76 ++--- man/compute_NB_DIC.Rd | 76 ++--- man/compute_ZINB_DIC.Rd | 76 ++--- man/conv.test.Rd | 72 ++--- man/county.adjacency.Rd | 38 +- man/get_adj_mat.Rd | 58 ++-- man/qRankPar.Rd | 92 +++--- man/qRankParTop.Rd | 92 +++--- man/simdat.Rd | 38 +- tests/testthat.R | 24 - tests/testthat/_snaps/mainfuncs.md | 42 +-- vignettes/BSTZINB_vignette.Rmd | 12 28 files changed, 1001 insertions(+), 1019 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph]
,
Mike Cheng [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.41.0 dated 2024-12-18 and 1.42.0 dated 2025-01-30
DESCRIPTION | 6 ++-- MD5 | 38 ++++++++++++++++-------------- NEWS.md | 25 +++++++++++++++++++ R/availableCores.R | 13 +++++++--- R/availableWorkers.R | 3 +- R/cgroups.R | 24 ++++-------------- R/isNodeAlive.R | 5 ++- R/killNode.R | 5 ++- R/makeNodePSOCK.R | 4 +-- R/utils,cluster.R | 2 - inst/doc/parallelly-15-cloud-workers.html | 2 - inst/doc/parallelly-15-cloud-workers.md | 2 - inst/test-data/mixed-cgroups |only man/availableCores.Rd | 3 +- man/availableWorkers.Rd | 3 +- man/makeClusterPSOCK.Rd | 4 +-- tests/availableCores.R | 7 +++-- tests/cgroups.R | 2 - vignettes/parallelly-15-cloud-workers.md | 2 - 19 files changed, 89 insertions(+), 61 deletions(-)
Title: Bayesian Structure and Causal Learning of Gaussian Directed
Graphs
Description: A collection of functions for structure learning of causal networks and estimation of joint causal effects from observational Gaussian data. Main algorithm consists of a Markov chain Monte Carlo scheme for posterior inference of causal structures, parameters and causal effects between variables.
References:
F. Castelletti and A. Mascaro (2021) <doi:10.1007/s10260-021-00579-1>,
F. Castelletti and A. Mascaro (2022) <doi:10.48550/arXiv.2201.12003>.
Author: Federico Castelletti [aut],
Alessandro Mascaro [aut, cre, cph]
Maintainer: Alessandro Mascaro <alessandro.mascaro@upf.edu>
Diff between BCDAG versions 1.1.1 dated 2024-06-14 and 1.1.2 dated 2025-01-30
DESCRIPTION | 8 MD5 | 20 +- NEWS.md | 3 R/learn_DAG.R | 16 + build/vignette.rds |binary inst/doc/bcdag_generatedata.html | 4 inst/doc/bcdag_getfamily.R | 16 - inst/doc/bcdag_getfamily.html | 340 +++++++++++++++++++-------------------- inst/doc/bcdag_learnDAG.R | 24 +- inst/doc/bcdag_learnDAG.html | 280 ++++++++++++++++---------------- man/learn_DAG.Rd | 16 + 11 files changed, 379 insertions(+), 348 deletions(-)
Title: Visualization of Design of Experiments from the 'agricolae'
Package
Description: Visualization of Design of Experiments from the 'agricolae' package with 'ggplot2' framework
The user provides an experiment design from the 'agricolae' package, calls the corresponding function and will receive a
visualization with 'ggplot2' based functions that are specific for each design. As there are many different designs, each design is tested on its type.
The output can be modified with standard 'ggplot2' commands or with other packages with 'ggplot2' function extensions.
Author: Jens Harbers [aut, cre]
Maintainer: Jens Harbers <jensharbers@gmail.com>
Diff between agricolaeplotr versions 0.6.0 dated 2025-01-22 and 0.6.1 dated 2025-01-30
DESCRIPTION | 6 MD5 | 14 - NAMESPACE | 1 NEWS.md | 4 R/hello.R | 564 ++++++++++++++++++++++++----------------------- inst/doc/FielDHub.html | 4 inst/doc/vignette.html | 4 tests/testthat/testall.R | 191 ++++++++------- 8 files changed, 410 insertions(+), 378 deletions(-)
More information about agricolaeplotr at CRAN
Permanent link
Title: The Free Group
Description: The free group in R; juxtaposition is represented by a
plus. Includes inversion, multiplication by a scalar,
group-theoretic power operation, and Tietze forms. To cite the
package in publications please use Hankin (2022)
<doi:10.48550/ARXIV.2212.05883>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between freegroup versions 1.1-8 dated 2024-01-13 and 1.1-9 dated 2025-01-30
DESCRIPTION | 16 ++++++++-------- MD5 | 35 +++++++++++++++++++---------------- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/freegroup.R | 27 +++++++++++++++++++++++++++ build/partial.rdb |binary build/vignette.rds |binary data/dot.rda |binary inst/doc/freegroup.pdf |binary man/Ops.free.Rd | 14 +++++++++++--- man/backwards.Rd | 9 ++++++++- man/free.Rd | 2 +- man/primitive.Rd |only man/rfree.Rd | 13 +++++++++++-- man/subs.Rd | 2 +- tests/testthat/test_aaa.R | 22 +++++++++++++--------- tests/testthat/test_aab.R | 19 ++++++++++--------- tests/testthat/test_aae.R |only tests/testthat/test_aaf.R |only vignettes/freegroup.bib | 9 +++++++++ 20 files changed, 125 insertions(+), 50 deletions(-)
Title: Read and Write CDISC Dataset JSON Files
Description: Read, construct and write CDISC (Clinical Data Interchange Standards Consortium) Dataset JSON (JavaScript Object Notation) files, while validating per the Dataset JSON schema file, as described in CDISC (2023) <https://www.cdisc.org/standards/data-exchange/dataset-json>.
Author: Mike Stackhouse [aut, cre] ,
Nicholas Masel [aut]
Maintainer: Mike Stackhouse <mike.stackhouse@atorusresearch.com>
Diff between datasetjson versions 0.2.0 dated 2024-01-09 and 0.3.0 dated 2025-01-30
datasetjson-0.2.0/datasetjson/R/data_metadata.R |only datasetjson-0.2.0/datasetjson/R/dataset_metadata.R |only datasetjson-0.2.0/datasetjson/R/date_time_conversions.R |only datasetjson-0.2.0/datasetjson/data/sas_date_formats.rda |only datasetjson-0.2.0/datasetjson/data/sas_datetime_formats.rda |only datasetjson-0.2.0/datasetjson/data/sas_time_formats.rda |only datasetjson-0.2.0/datasetjson/data/schema_1_0_0.rda |only datasetjson-0.2.0/datasetjson/inst/doc/getting_started.R |only datasetjson-0.2.0/datasetjson/inst/doc/getting_started.Rmd |only datasetjson-0.2.0/datasetjson/inst/doc/getting_started.html |only datasetjson-0.2.0/datasetjson/man/data_metadata.Rd |only datasetjson-0.2.0/datasetjson/man/data_metadata_setters.Rd |only datasetjson-0.2.0/datasetjson/man/dataset_metadata.Rd |only datasetjson-0.2.0/datasetjson/man/file_metadata.Rd |only datasetjson-0.2.0/datasetjson/man/file_metadata_setters.Rd |only datasetjson-0.2.0/datasetjson/man/sas_date_formats.Rd |only 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datasetjson-0.3.0/datasetjson/R/datasetjson.R | 197 datasetjson-0.3.0/datasetjson/R/file_metadata.R | 251 datasetjson-0.3.0/datasetjson/R/global.R | 4 datasetjson-0.3.0/datasetjson/R/helpers.R |only datasetjson-0.3.0/datasetjson/R/read_dataset_json.R | 153 datasetjson-0.3.0/datasetjson/R/utils.R | 88 datasetjson-0.3.0/datasetjson/R/validate_dataset_json.R | 12 datasetjson-0.3.0/datasetjson/R/write_dataset_json.R | 132 datasetjson-0.3.0/datasetjson/R/zzz.R | 3 datasetjson-0.3.0/datasetjson/README.md | 230 datasetjson-0.3.0/datasetjson/build/vignette.rds |binary datasetjson-0.3.0/datasetjson/data/iris_items.rda |binary datasetjson-0.3.0/datasetjson/data/schema_1_1_0.rda |only datasetjson-0.3.0/datasetjson/inst/adsl.xpt |only datasetjson-0.3.0/datasetjson/inst/ae.xpt |only datasetjson-0.3.0/datasetjson/inst/doc/converting_files.R |only datasetjson-0.3.0/datasetjson/inst/doc/converting_files.Rmd |only datasetjson-0.3.0/datasetjson/inst/doc/converting_files.html |only datasetjson-0.3.0/datasetjson/inst/doc/datasetjson.R |only datasetjson-0.3.0/datasetjson/inst/doc/datasetjson.Rmd |only datasetjson-0.3.0/datasetjson/inst/doc/datasetjson.html |only datasetjson-0.3.0/datasetjson/inst/doc/date_time_datetime.R |only datasetjson-0.3.0/datasetjson/inst/doc/date_time_datetime.Rmd |only datasetjson-0.3.0/datasetjson/inst/doc/date_time_datetime.html |only datasetjson-0.3.0/datasetjson/inst/doc/odm_details.R | 2 datasetjson-0.3.0/datasetjson/inst/doc/odm_details.Rmd | 6 datasetjson-0.3.0/datasetjson/inst/doc/odm_details.html | 13 datasetjson-0.3.0/datasetjson/inst/doc/precision.R |only datasetjson-0.3.0/datasetjson/inst/doc/precision.Rmd |only datasetjson-0.3.0/datasetjson/inst/doc/precision.html |only datasetjson-0.3.0/datasetjson/man/dataset_json.Rd | 150 datasetjson-0.3.0/datasetjson/man/dataset_metadata_setters.Rd |only datasetjson-0.3.0/datasetjson/man/datasetjson-package.Rd | 6 datasetjson-0.3.0/datasetjson/man/get_column_metadata.Rd |only datasetjson-0.3.0/datasetjson/man/iris_items.Rd | 5 datasetjson-0.3.0/datasetjson/man/read_dataset_json.Rd | 44 datasetjson-0.3.0/datasetjson/man/schema_1_1_0.Rd |only datasetjson-0.3.0/datasetjson/man/set_variable_attributes.Rd |only datasetjson-0.3.0/datasetjson/man/validate_dataset_json.Rd | 8 datasetjson-0.3.0/datasetjson/man/write_dataset_json.Rd | 31 datasetjson-0.3.0/datasetjson/tests/testthat/test-datasetjson.R | 204 datasetjson-0.3.0/datasetjson/tests/testthat/test-helpers.R |only datasetjson-0.3.0/datasetjson/tests/testthat/test-read_dataset_json.R | 82 datasetjson-0.3.0/datasetjson/tests/testthat/test-utils.R | 63 datasetjson-0.3.0/datasetjson/tests/testthat/test-validate_dataset_json.R | 37 datasetjson-0.3.0/datasetjson/tests/testthat/test-write_dataset_json.R | 317 datasetjson-0.3.0/datasetjson/tests/testthat/testdata/adsl.json |13586 ---------- datasetjson-0.3.0/datasetjson/tests/testthat/testdata/adsl.ndjson |only 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Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom', 'iPro 2', 'Diasend', 'Libre', or 'Carelink' data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload. cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <timothy.vigers@cuanschutz.edu>
Diff between cgmanalysis versions 2.7.7 dated 2023-10-20 and 3.0 dated 2025-01-30
DESCRIPTION | 10 MD5 | 12 R/cgmreport.R | 242 ++++++----- R/cgmvariables.R | 1079 ++++++++++++++++++++++++++++++---------------------- R/cleandata.R | 36 + man/cgmreport.Rd | 16 man/cgmvariables.Rd | 36 - 7 files changed, 819 insertions(+), 612 deletions(-)
Title: Generalized Additive Mixed Model Interface
Description: An interface for fitting generalized additive models (GAMs) and generalized additive mixed models (GAMMs) using the 'lme4' package as the computational engine, as described in Helwig (2024) <doi:10.3390/stats7010003>. Supports default and formula methods for model specification, additive and tensor product splines for capturing nonlinear effects, and automatic determination of spline type based on the class of each predictor. Includes an S3 plot method for visualizing the (nonlinear) model terms, an S3 predict method for forming predictions from a fit model, and an S3 summary method for conducting significance testing using the Bayesian interpretation of a smoothing spline.
Author: Nathaniel E. Helwig [aut, cre]
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between gammi versions 0.1 dated 2024-09-15 and 0.2 dated 2025-01-30
ChangeLog |only DESCRIPTION | 8 ++++---- MD5 | 33 +++++++++++++++++---------------- NAMESPACE | 2 +- R/gammi.default.R | 26 ++++++++++++++++++++------ R/gammi.formula.R | 6 +++++- R/predict.gammi.R | 4 ++-- R/spline.basis.R | 5 +---- R/visualizer1.R | 14 +++++++++----- build/partial.rdb |binary man/exam.Rd | 3 +++ man/gammi.Rd | 3 +++ man/plot.gammi.Rd | 3 +++ man/predict.gammi.Rd | 3 +++ man/spline.basis.Rd | 4 ++++ man/spline.model.matrix.Rd | 3 +++ man/summary.gammi.Rd | 3 +++ man/visualizers.Rd | 8 +++++++- 18 files changed, 88 insertions(+), 40 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson [aut, cre] ,
Evan Sergeant [aut],
Cord Heuer [ctb],
Telmo Nunes [ctb],
Cord Heuer [ctb],
Jonathon Marshall [ctb],
Javier Sanchez [ctb],
Ron Thornton [ctb],
Jeno Reiczigel [ctb],
Jim Robison-Cox [ctb],
Paola Sebastiani [ctb],
Peter Soly [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.78 dated 2024-12-09 and 2.0.80 dated 2025-01-30
DESCRIPTION | 8 ++--- MD5 | 44 +++++++++++++++-------------- NAMESPACE | 1 NEWS | 20 +++++++++++++ R/epi.2by2.R | 6 +-- R/epi.fpos.R |only inst/doc/epiR_descriptive.html | 18 +++++------ inst/doc/epiR_measures_of_association.html | 16 +++++----- inst/doc/epiR_sample_size.html | 4 +- inst/doc/epiR_surveillance.html | 14 ++++----- man/epi.about.Rd | 28 +++++++++++++++++- man/epi.blcm.paras.Rd | 2 - man/epi.bohning.Rd | 8 ++--- man/epi.conf.Rd | 10 +++--- man/epi.dms.Rd | 4 +- man/epi.fpos.Rd |only man/epi.herdtest.Rd | 2 - man/epi.indirectadj.Rd | 10 +++--- man/epi.ltd.Rd | 4 +- man/epi.smd.Rd | 12 +++---- man/epi.smr.Rd | 6 ++- man/epi.ssstrataestb.Rd | 4 +- man/rsu.pstar.Rd | 2 - man/rsu.sep.cens.Rd | 2 - 24 files changed, 138 insertions(+), 87 deletions(-)
Title: Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Description: Utility package containing:
1) Facilities for working with grouped data: 'do' something to data
stratified 'by' some variables.
2) LSmeans (least-squares means), general linear estimates.
3) Restrict functions to a smaller domain.
4) Miscellaneous other utilities.
Author: Ulrich Halekoh [aut, cph],
Soeren Hoejsgaard [aut, cre, cph]
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between doBy versions 4.6.24 dated 2024-10-07 and 4.6.25 dated 2025-01-30
doBy-4.6.24/doBy/inst/doc/linest_lsmeans.rnw |only doBy-4.6.24/doBy/man/is-estimable.Rd |only doBy-4.6.24/doBy/man/null-basis.Rd |only doBy-4.6.24/doBy/vignettes/linest_lsmeans.rnw |only doBy-4.6.25/doBy/DESCRIPTION | 6 - doBy-4.6.25/doBy/MD5 | 48 ++++++------ doBy-4.6.25/doBy/NAMESPACE | 1 doBy-4.6.25/doBy/NEWS.md | 5 + doBy-4.6.25/doBy/R/DATA_doby.R | 31 +++++++ doBy-4.6.25/doBy/R/by_lmBy.R | 14 +-- doBy-4.6.25/doBy/R/expr_to_fun.R | 39 ++++----- doBy-4.6.25/doBy/R/linest_LSmeans.R | 3 doBy-4.6.25/doBy/R/linest_compute.R | 103 +++++++++++++++++--------- doBy-4.6.25/doBy/R/linest_matrix.R | 34 ++------ doBy-4.6.25/doBy/R/linest_utilities.R | 103 +------------------------- doBy-4.6.25/doBy/build/vignette.rds |binary doBy-4.6.25/doBy/data/shoes.RData |only doBy-4.6.25/doBy/inst/doc/doby.html | 6 - doBy-4.6.25/doBy/inst/doc/linest_lsmeans.R | 12 ++- doBy-4.6.25/doBy/inst/doc/linest_lsmeans.Rnw |only doBy-4.6.25/doBy/inst/doc/linest_lsmeans.pdf |binary doBy-4.6.25/doBy/inst/doc/section_fun.html | 20 ++--- doBy-4.6.25/doBy/man/crickets.Rd | 2 doBy-4.6.25/doBy/man/expr_to_fun.Rd | 31 +++---- doBy-4.6.25/doBy/man/income.Rd | 20 +++++ doBy-4.6.25/doBy/man/is_estimable.Rd |only doBy-4.6.25/doBy/man/linest.Rd | 6 - doBy-4.6.25/doBy/man/ls-means.Rd | 3 doBy-4.6.25/doBy/vignettes/linest_lsmeans.Rnw |only 29 files changed, 231 insertions(+), 256 deletions(-)
Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', 'Snowflake', 'Spark', 'SQLite',
and 'InterSystems IRIS'). Also includes support for fetching data as 'Andromeda' objects. Uses either 'Java Database Connectivity' ('JDBC') or
other 'DBI' drivers to connect to databases.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] ,
PostgreSQL Global Development Group [cph] ,
Oracle Inc. [cph] ,
Amazon Inc. [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 6.3.3 dated 2025-01-15 and 6.4.0 dated 2025-01-30
DESCRIPTION | 17 +- MD5 | 49 +++---- NEWS.md | 9 + R/BulkLoad.R | 81 +++++++++++ R/Connect.R | 35 ++++- R/DatabaseConnector.R | 4 R/Drivers.R | 11 + R/InsertTable.R | 9 + R/RStudio.R | 2 R/Sql.R | 13 + README.md | 1 inst/doc/Connecting.Rmd | 5 inst/doc/Connecting.pdf |binary inst/doc/DbiAndDbplyr.pdf |binary inst/doc/Querying.pdf |binary inst/sql/sql_server/sparkCopy.sql |only man/DatabaseConnector-package.Rd | 2 man/connect.Rd | 12 + man/createConnectionDetails.Rd | 12 + man/createDbiConnectionDetails.Rd | 1 man/downloadJdbcDrivers.Rd | 2 man/insertTable.Rd | 7 + man/jdbcDrivers.Rd | 2 tests/testthat/setup.R | 266 +++++++++++++++++++++----------------- tests/testthat/test-insertTable.R | 2 vignettes/Connecting.Rmd | 5 26 files changed, 381 insertions(+), 166 deletions(-)
More information about DatabaseConnector at CRAN
Permanent link
Title: The Weyl Algebra
Description: A suite of routines for Weyl algebras. Notation follows
Coutinho (1995, ISBN 0-521-55119-6, "A Primer of Algebraic
D-Modules"). Uses 'disordR' discipline
(Hankin 2022 <doi:10.48550/arXiv.2210.03856>). To cite
the package in publications, use Hankin
2022 <doi:10.48550/arXiv.2212.09230>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between weyl versions 0.0-5 dated 2024-07-03 and 0.0-6 dated 2025-01-30
DESCRIPTION | 13 +++++++------ MD5 | 42 +++++++++++++++++++++++------------------- NAMESPACE | 2 ++ NEWS.md |only R/extract.R |only R/print.R | 2 +- R/weyl.R | 39 +++++++++++++++++++++++++++++++++++---- R/weyl_product.R | 5 ++--- README.md | 20 +++++++++++++++----- build/partial.rdb |binary build/vignette.rds |binary data/dot.rda |binary data/x_and_d.rda |binary inst/doc/weyl.R | 3 +++ inst/doc/weyl.Rmd | 2 ++ inst/doc/weyl.html | 32 +++++++++++++++++--------------- man/Ops.Rd | 3 +++ man/horner.Rd |only man/ooom.Rd |only man/print.Rd | 1 + man/rweyl.Rd | 29 +++++++++++++++++++++++++++-- man/weyl.Rd | 14 ++++++++++---- tests/testthat/test_aaa.R | 9 +++++++-- vignettes/weyl.Rmd | 2 ++ 24 files changed, 157 insertions(+), 61 deletions(-)
Title: Toolkit for Reduced Form and Structural Smooth Transition Vector
Autoregressive Models
Description: Maximum likelihood estimation of smooth transition vector
autoregressive models with various types of transition weight functions,
conditional distributions, and identification methods. Constrained
estimation with various types of constraints is available. Residual based
model diagnostics, forecasting, simulations, and calculation of impulse
response functions, generalized impulse response functions, and generalized
forecast error variance decompositions. See
Heather Anderson, Farshid Vahid (1998) <doi:10.1016/S0304-4076(97)00076-6>,
Helmut Lütkepohl, Aleksei Netšunajev (2017) <doi:10.1016/j.jedc.2017.09.001>,
Markku Lanne, Savi Virolainen (2024) <doi:10.48550/arXiv.2403.14216>,
Savi Virolainen (2024) <doi:10.48550/arXiv.2404.19707>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between sstvars versions 1.1.2 dated 2025-01-07 and 1.1.3 dated 2025-01-30
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NEWS.md | 8 ++++++++ R/MAINest.R | 4 ++-- R/STVARconstruction.R | 32 ++++++++++++++++++++++---------- R/parameterReforms.R | 35 +++++++++++++++++++---------------- R/printMethods.R | 15 ++++++++------- inst/doc/sstvars-vignette.Rnw | 2 +- inst/doc/sstvars-vignette.pdf |binary man/fitSTVAR.Rd | 2 +- man/reorder_B_columns.Rd | 16 +++++++++------- man/sort_impactmats.Rd | 13 +++++++------ man/swap_B_signs.Rd | 6 ++++-- vignettes/sstvars-vignette.Rnw | 2 +- 14 files changed, 98 insertions(+), 69 deletions(-)
Title: Data Simulation for Life Science and Breeding
Description: Data simulator including genotype, phenotype, pedigree,
selection and reproduction in R. It simulates most of reproduction process
of animals or plants and provides data for GS (Genomic Selection),
GWAS (Genome-Wide Association Study), and Breeding.
For ADI model, please see Kao C and Zeng Z (2002) <doi:10.1093/genetics/160.3.1243>.
For build.cov, please see B. D. Ripley (1987) <ISBN:9780470009604>.
Author: Dong Yin [aut],
Xuanning Zhang [aut],
Lilin Yin [aut],
Haohao Zhang [aut],
Zhenshuang Tang [aut],
Jingya Xu [aut],
Xiaohui Yuan [aut],
Xiang Zhou [aut],
Xinyun Li [aut],
Shuhong Zhao [aut],
Xiaolei Liu [cre, aut, cph]
Maintainer: Xiaolei Liu <xll198708@gmail.com>
Diff between simer versions 0.9.0.5 dated 2024-09-17 and 0.9.0.6 dated 2025-01-30
simer-0.9.0.5/simer/man/simer.Data.Kin.Rd |only simer-0.9.0.5/simer/src/MinimalProgressBar.h |only simer-0.9.0.5/simer/src/emma.cpp |only simer-0.9.0.6/simer/DESCRIPTION | 14 simer-0.9.0.6/simer/MD5 | 183 ++-- simer-0.9.0.6/simer/NAMESPACE | 178 +-- simer-0.9.0.6/simer/R/RcppExports.R | 48 - simer-0.9.0.6/simer/R/simer.Data.R | 130 -- simer-0.9.0.6/simer/R/simer.Genotype.r | 219 +++- simer-0.9.0.6/simer/R/simer.Parameter.r | 10 simer-0.9.0.6/simer/R/simer.Phenotype.r | 58 - simer-0.9.0.6/simer/R/simer.Reproduces.r | 80 - simer-0.9.0.6/simer/R/simer.Utility.R | 57 - simer-0.9.0.6/simer/R/simer.r | 2 simer-0.9.0.6/simer/R/zzz.R | 37 simer-0.9.0.6/simer/README.md | 52 + simer-0.9.0.6/simer/data/simdata.rda |binary simer-0.9.0.6/simer/inst/extdata/01bigmemory/demo.geno.bin |binary simer-0.9.0.6/simer/inst/extdata/01bigmemory/demo.geno.desc | 6 simer-0.9.0.6/simer/man/GxG.network.Rd | 66 - simer-0.9.0.6/simer/man/IndPerGen.Rd | 90 +- simer-0.9.0.6/simer/man/annotation.Rd | 114 +- simer-0.9.0.6/simer/man/bigt.Rd |only simer-0.9.0.6/simer/man/build.cov.Rd | 76 - simer-0.9.0.6/simer/man/cal.eff.Rd | 108 +- simer-0.9.0.6/simer/man/checkEnv.Rd | 66 - simer-0.9.0.6/simer/man/format_time.Rd | 56 - simer-0.9.0.6/simer/man/generate.map.Rd | 78 - simer-0.9.0.6/simer/man/generate.pop.Rd | 68 - simer-0.9.0.6/simer/man/geno.cvt1.Rd | 73 - simer-0.9.0.6/simer/man/geno.cvt2.Rd | 73 - simer-0.9.0.6/simer/man/genotype.Rd | 92 +- simer-0.9.0.6/simer/man/getfam.Rd | 72 - simer-0.9.0.6/simer/man/load_if_installed.Rd | 50 - simer-0.9.0.6/simer/man/logging.initialize.Rd | 52 - simer-0.9.0.6/simer/man/logging.log.Rd | 88 - simer-0.9.0.6/simer/man/logging.print.Rd | 68 - simer-0.9.0.6/simer/man/make_line.Rd | 66 - simer-0.9.0.6/simer/man/mate.2waycro.Rd | 126 +- simer-0.9.0.6/simer/man/mate.3waycro.Rd | 126 +- simer-0.9.0.6/simer/man/mate.4waycro.Rd | 126 +- simer-0.9.0.6/simer/man/mate.Rd | 94 +- simer-0.9.0.6/simer/man/mate.assort.Rd | 122 +- simer-0.9.0.6/simer/man/mate.backcro.Rd | 126 +- simer-0.9.0.6/simer/man/mate.clone.Rd | 122 +- simer-0.9.0.6/simer/man/mate.dh.Rd | 122 +- simer-0.9.0.6/simer/man/mate.disassort.Rd | 122 +- simer-0.9.0.6/simer/man/mate.randexself.Rd | 122 +- simer-0.9.0.6/simer/man/mate.randmate.Rd | 122 +- simer-0.9.0.6/simer/man/mate.selfpol.Rd | 122 +- simer-0.9.0.6/simer/man/mate.userped.Rd | 114 +- simer-0.9.0.6/simer/man/mkl_env.Rd | 54 - simer-0.9.0.6/simer/man/param.annot.Rd | 108 +- simer-0.9.0.6/simer/man/param.geno.Rd | 78 - simer-0.9.0.6/simer/man/param.global.Rd | 86 - simer-0.9.0.6/simer/man/param.pheno.Rd | 100 +- simer-0.9.0.6/simer/man/param.reprod.Rd | 72 - simer-0.9.0.6/simer/man/param.sel.Rd | 84 - simer-0.9.0.6/simer/man/param.simer.Rd | 76 - simer-0.9.0.6/simer/man/paste_label.Rd | 62 - simer-0.9.0.6/simer/man/phenotype.Rd | 206 ++-- simer-0.9.0.6/simer/man/pop.geno.Rd | 42 simer-0.9.0.6/simer/man/pop.map.Rd | 42 simer-0.9.0.6/simer/man/print_accomplished.Rd | 54 - simer-0.9.0.6/simer/man/print_bar.Rd | 114 +- simer-0.9.0.6/simer/man/print_info.Rd | 140 +-- simer-0.9.0.6/simer/man/remove_bigmatrix.Rd | 86 - simer-0.9.0.6/simer/man/reproduces.Rd | 122 +- simer-0.9.0.6/simer/man/rule_wrap.Rd | 62 - simer-0.9.0.6/simer/man/selects.Rd | 118 +- simer-0.9.0.6/simer/man/simer.Data.Bfile2MVP.Rd | 111 +- simer-0.9.0.6/simer/man/simer.Data.Env.Rd | 118 +- simer-0.9.0.6/simer/man/simer.Data.Geno.Rd | 158 +-- simer-0.9.0.6/simer/man/simer.Data.Impute.Rd | 112 +- simer-0.9.0.6/simer/man/simer.Data.Json.Rd | 128 +- simer-0.9.0.6/simer/man/simer.Data.MVP2Bfile.Rd | 108 +- simer-0.9.0.6/simer/man/simer.Data.MVP2MVP.Rd | 90 +- simer-0.9.0.6/simer/man/simer.Data.Map.Rd | 98 +- simer-0.9.0.6/simer/man/simer.Data.Ped.Rd | 152 +-- simer-0.9.0.6/simer/man/simer.Data.Pheno.Rd | 122 +- simer-0.9.0.6/simer/man/simer.Data.Rd | 96 +- simer-0.9.0.6/simer/man/simer.Data.SELIND.Rd | 102 +- simer-0.9.0.6/simer/man/simer.Data.cHIBLUP.Rd | 114 +- simer-0.9.0.6/simer/man/simer.Rd | 82 - simer-0.9.0.6/simer/man/simer.Version.Rd | 58 - simer-0.9.0.6/simer/man/write.file.Rd | 68 - simer-0.9.0.6/simer/src/Makevars | 12 simer-0.9.0.6/simer/src/Makevars.win | 12 simer-0.9.0.6/simer/src/RcppExports.cpp | 156 ++- simer-0.9.0.6/simer/src/data_converter.cpp | 345 ++++--- simer-0.9.0.6/simer/src/genotype.cpp | 540 +++++++----- simer-0.9.0.6/simer/src/impute.cpp | 277 +++++- simer-0.9.0.6/simer/src/pedigree.cpp | 55 - simer-0.9.0.6/simer/src/simer.h |only simer-0.9.0.6/simer/src/simer_omp.h | 17 95 files changed, 4706 insertions(+), 4127 deletions(-)
Title: Scale Mixture of Normal Distribution in Linear Mixed-Effects
Model
Description: Bayesian analysis of censored linear mixed-effects models that replace Gaussian assumptions with a flexible class of distributions, such as the scale mixture of normal family distributions, considering a damped exponential correlation structure which was employed to account for within-subject autocorrelation among irregularly observed measures. For more details, see Kelin Zhong, Fernanda L. Schumacher, Luis M. Castro, Victor H. Lachos (2025) <doi:10.1002/sim.10295>.
Author: Kelin Zhong [aut, cre],
Fernanda L. Schumacher [aut],
Luis M. Castro [aut],
Victor H. Lachos [aut],
Jalmar M.F. Carrasco [aut]
Maintainer: Kelin Zhong <kelin.zhong@uconn.edu>
Diff between SMNlmec versions 0.1.0 dated 2024-11-26 and 1.0.0 dated 2025-01-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/SMNlmec.est.R | 2 +- man/SMNlmec.est.Rd | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Easy Import of the EU Labour Market Policy Data
Description: European Commission's Labour Market Policy (LMP) database
(<https://webgate.ec.europa.eu/empl/redisstat/databrowser/explore/all/lmp?lang=en&display=card&sort=category>)
provides information on labour market interventions, which are government
actions to help and support the unemployed and other disadvantaged groups in
the transition from unemployment or inactivity to work. It covers the EU
countries and Norway. This package provides functions for downloading and
importing the LMP data and metadata (codelists).
Author: Aleksander Rutkowski [aut, cre]
Maintainer: Aleksander Rutkowski <alek.rutkowski@gmail.com>
Diff between LMPdata versions 0.1.0 dated 2024-07-18 and 0.2.0 dated 2025-01-30
DESCRIPTION | 8 ++--- LICENSE | 4 +- MD5 | 12 ++++---- NAMESPACE | 12 ++++---- R/lib.R | 10 +++---- man/LMPdata.Rd | 16 +++++------ man/importLabels.Rd | 74 ++++++++++++++++++++++++++-------------------------- 7 files changed, 68 insertions(+), 68 deletions(-)
Title: 'R6'-Based Flexible Framework for Permutation Tests
Description: Implements non-parametric tests from Higgins (2004, ISBN:0534387756), including tests for one sample, two samples, k samples, paired comparisons, blocked designs, trends and association. Built with 'Rcpp' for efficiency and 'R6' for flexible, object-oriented design, the package provides a unified framework for performing or creating custom permutation tests.
Author: Yan Du [aut, cre]
Maintainer: Yan Du <isduyan@outlook.com>
Diff between LearnNonparam versions 1.2.6 dated 2024-12-17 and 1.2.7 dated 2025-01-30
DESCRIPTION | 6 - MD5 | 108 +++++++++++++++++++----------- NAMESPACE | 1 NEWS.md | 12 +++ R/AnsariBradley.R | 13 +-- R/ChiSquare.R | 16 ++-- R/Correlation.R | 81 +++++++++++++--------- R/Difference.R | 22 +++--- R/Friedman.R | 22 +++--- R/JonckheereTerpstra.R | 24 +++--- R/KSampleTest.R | 2 R/KolmogorovSmirnov.R | 15 ++-- R/KruskalWallis.R | 12 +-- R/MultipleComparison.R | 2 R/OneSampleTest.R | 2 R/OneWay.R | 43 ++++++----- R/Page.R | 11 +-- R/PairedDifference.R | 30 +++----- R/PermuTest.R | 12 +-- R/RCBDOneWay.R | 30 ++++---- R/RatioMeanDeviance.R | 16 +--- R/ScoreSum.R | 2 R/SiegelTukey.R | 3 R/Sign.R | 2 R/Studentized.R | 16 ++-- R/TwoSampleAssociationTest.R | 6 - R/TwoSampleTest.R | 3 R/Wilcoxon.R | 6 - R/pmt.R | 10 +- README.md |only inst/include/pmt/impl_association_pmt.hpp | 40 +++++------ inst/include/pmt/impl_ksample_pmt.hpp | 35 ++++----- inst/include/pmt/impl_multcomp_pmt.hpp | 48 ++++++------- inst/include/pmt/impl_paired_pmt.hpp | 40 +++++------ inst/include/pmt/impl_rcbd_pmt.hpp | 34 +++------ inst/include/pmt/impl_table_pmt.hpp | 48 +++++-------- inst/include/pmt/impl_twosample_pmt.hpp | 71 ++++++++++++------- inst/include/pmt/permutation.hpp | 37 ++++++---- inst/include/pmt/progress.hpp | 65 +++++++++--------- man/figures/README |only man/references |only src/pmt_interface.cpp | 67 +++++++----------- 42 files changed, 543 insertions(+), 470 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-23 2.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-16 1.0.1
2023-05-04 0.2.2
2023-02-27 0.2.1
2021-01-28 0.2.0
2021-01-21 0.1.4
Title: Bayesian SVARs with Sign, Zero, and Narrative Restrictions
Description: Implements state-of-the-art algorithms for the Bayesian analysis of Structural Vector Autoregressions (SVARs) identified by sign, zero, and narrative restrictions. The core model is based on a flexible Vector Autoregression with estimated hyper-parameters of the Minnesota prior and the dummy observation priors as in Giannone, Lenza, Primiceri (2015) <doi:10.1162/REST_a_00483>. The sign restrictions are implemented employing the methods proposed by Rubio-Ramírez, Waggoner & Zha (2010) <doi:10.1111/j.1467-937X.2009.00578.x>, while identification through sign and zero restrictions follows the approach developed by Arias, Rubio-Ramírez, & Waggoner (2018) <doi:10.3982/ECTA14468>. Furthermore, our tool provides algorithms for identification via sign and narrative restrictions, in line with the methods introduced by Antolín-Díaz and Rubio-Ramírez (2018) <doi:10.1257/aer.20161852>. Users can also estimate a model with sign, zero, and narrative restrictions impos [...truncated...]
Author: Xiaolei Wang [aut, cre] ,
Tomasz Wozniak [aut]
Maintainer: Xiaolei Wang <adamwang15@gmail.com>
Diff between bsvarSIGNs versions 1.0.1 dated 2024-08-17 and 2.0 dated 2025-01-29
DESCRIPTION | 17 +++--- MD5 | 26 ++++++---- NEWS.md | 5 ++ R/bsvarSIGNs-package.R | 3 - R/specify.R | 2 README.md | 84 +++++++++++++++++++++++++--------- build |only inst/CITATION |only inst/doc |only inst/include/bsvarSIGNs_RcppExports.h | 4 - man/bsvarSIGNs-package.Rd | 3 - src/RcppExports.cpp | 12 ++-- src/compute.cpp | 8 +-- src/compute.h | 8 +-- vignettes |only 15 files changed, 115 insertions(+), 57 deletions(-)
Title: Working with Audio and Video in R
Description: Bindings to 'FFmpeg' <http://www.ffmpeg.org/> AV library for working with
audio and video in R. Generates high quality video from images or R graphics with
custom audio. Also offers high performance tools for reading raw audio, creating
'spectrograms', and converting between countless audio / video formats. This package
interfaces directly to the C API and does not require any command line utilities.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between av versions 0.9.3 dated 2024-11-09 and 0.9.4 dated 2025-01-29
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- NEWS | 6 ++++++ R/images.R | 14 ++++++++++++-- configure | 2 -- man/av_video_images.Rd | 17 ++++++++++++++++- src/Makevars.win | 20 ++++++++++++++++---- src/avcompat.h | 2 +- src/formats.c | 14 ++++++-------- src/video.c | 6 +++++- tests/testthat/test-audio.R | 2 +- tests/testthat/test-fft.R | 5 +++-- tests/testthat/test-formats.R | 12 ++++++++++++ tests/testthat/test-video.R | 9 +++++++-- 14 files changed, 103 insertions(+), 42 deletions(-)
Title: Process and Report 'GreenFeed' Data
Description: Provides tools for downloading, processing, and reporting daily and finalized 'GreenFeed' data.
Author: Guillermo Martinez-Boggio [cre, aut, cph]
,
Meredith Harrison [ctb],
Patrick Lutz [ctb]
Maintainer: Guillermo Martinez-Boggio <guillermo.martinezboggio@wisc.edu>
Diff between greenfeedr versions 1.0.1 dated 2024-10-31 and 1.1.0 dated 2025-01-29
DESCRIPTION | 6 - MD5 | 45 ++++--- NAMESPACE | 1 NEWS.md | 4 R/compare_gfdata.R |only R/get_gfdata.R | 27 ++-- R/process_gfdata.R | 44 ++++--- R/report_gfdata.R | 23 +--- R/utils.R | 15 ++ R/viseat.R | 6 - README.md | 256 ++++++++++++++++++++++----------------------- inst/CITATION |only inst/DailyReportsGF.Rmd | 8 - inst/doc/greenfeedr.R | 2 inst/doc/greenfeedr.Rmd | 2 inst/doc/greenfeedr.html | 9 + man/compare_gfdata.Rd |only man/figures/CheatSheet.pdf |binary man/figures/CheatSheet.png |binary man/filter_within_range.Rd | 6 - man/get_gfdata.Rd | 27 ++-- man/process_gfdata.Rd | 8 - man/report_gfdata.Rd | 17 +- man/viseat.Rd | 2 vignettes/greenfeedr.Rmd | 2 25 files changed, 269 insertions(+), 241 deletions(-)
Title: Robust Bayesian Longitudinal Regularized Semiparametric Mixed
Models
Description: Our recently developed fully robust Bayesian semiparametric mixed-effect model for high-dimensional longitudinal studies with heterogeneous observations can be implemented through this package. This model can distinguish between time-varying interactions and constant-effect-only cases to avoid model misspecifications. Facilitated by spike-and-slab priors, this model leads to superior performance in estimation, identification and statistical inference. In particular, robust Bayesian inferences in terms of valid Bayesian credible intervals on both parametric and nonparametric effects can be validated on finite samples. The Markov chain Monte Carlo algorithms of the proposed and alternative models are efficiently implemented in 'C++'.
Author: Kun Fan [aut, cre],
Cen Wu [aut]
Maintainer: Kun Fan <kfan@ksu.edu>
Diff between Blend versions 0.1.1 dated 2025-01-20 and 0.1.1.1 dated 2025-01-29
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- README.md | 23 +++++++++++++++++++++-- 3 files changed, 27 insertions(+), 8 deletions(-)
Title: REDCap Metadata Casting and Castellated Data Handling
Description: Casting metadata for REDCap database creation and handling of
castellated data using repeated instruments and longitudinal projects in
'REDCap'. Keeps a focused data export approach, by allowing to only export
required data from the database. Also for casting new REDCap databases based
on datasets from other sources.
Originally forked from the R part of 'REDCapRITS' by Paul Egeler.
See <https://github.com/pegeler/REDCapRITS>.
'REDCap' (Research Electronic Data Capture) is a secure, web-based software
platform designed to support data capture for research studies, providing
1) an intuitive interface for validated data capture; 2) audit trails for
tracking data manipulation and export procedures; 3) automated export
procedures for seamless data downloads to common statistical packages; and
4) procedures for data integration and interoperability with external
sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>;
Harris et al (2019) <doi:10.1016/j.jbi.2019.103208> [...truncated...]
Author: Andreas Gammelgaard Damsbo [aut, cre]
,
Paul Egeler [aut]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between REDCapCAST versions 24.12.1 dated 2024-12-02 and 25.1.1 dated 2025-01-29
REDCapCAST-24.12.1/REDCapCAST/man/figures |only REDCapCAST-25.1.1/REDCapCAST/DESCRIPTION | 18 REDCapCAST-25.1.1/REDCapCAST/MD5 | 47 - REDCapCAST-25.1.1/REDCapCAST/NAMESPACE | 8 REDCapCAST-25.1.1/REDCapCAST/NEWS.md | 18 REDCapCAST-25.1.1/REDCapCAST/R/ds2dd_detailed.R | 24 REDCapCAST-25.1.1/REDCapCAST/R/easy_redcap.R | 19 REDCapCAST-25.1.1/REDCapCAST/R/fct_drop.R | 24 REDCapCAST-25.1.1/REDCapCAST/R/read_redcap_tables.R | 12 REDCapCAST-25.1.1/REDCapCAST/R/shiny_cast.R | 16 REDCapCAST-25.1.1/REDCapCAST/R/utils.r | 23 REDCapCAST-25.1.1/REDCapCAST/inst/WORDLIST | 1 REDCapCAST-25.1.1/REDCapCAST/inst/doc/REDCapCAST.R | 5 REDCapCAST-25.1.1/REDCapCAST/inst/doc/REDCapCAST.Rmd | 7 REDCapCAST-25.1.1/REDCapCAST/inst/doc/REDCapCAST.html | 359 +++++----- REDCapCAST-25.1.1/REDCapCAST/inst/shiny-examples/casting/app.R | 94 +- REDCapCAST-25.1.1/REDCapCAST/inst/shiny-examples/casting/rsconnect/shinyapps.io/agdamsbo/redcapcast.dcf | 2 REDCapCAST-25.1.1/REDCapCAST/man/REDCapCAST-package.Rd | 2 REDCapCAST-25.1.1/REDCapCAST/man/apply_factor_labels.Rd | 2 REDCapCAST-25.1.1/REDCapCAST/man/clean_redcap_name.Rd | 3 REDCapCAST-25.1.1/REDCapCAST/man/cut_string_length.Rd |only REDCapCAST-25.1.1/REDCapCAST/man/ds2dd_detailed.Rd | 2 REDCapCAST-25.1.1/REDCapCAST/man/easy_redcap.Rd | 8 REDCapCAST-25.1.1/REDCapCAST/man/fct_drop.Rd | 17 REDCapCAST-25.1.1/REDCapCAST/vignettes/REDCapCAST.Rmd | 7 25 files changed, 435 insertions(+), 283 deletions(-)
Title: Analyze Nominal Response Data with the Multinomial-Poisson Trick
Description: Dichotomous responses having two categories can be analyzed
with stats::glm() or lme4::glmer() using the family=binomial option.
Unfortunately, polytomous responses with three or more unordered
categories cannot be analyzed similarly because there is no analogous
family=multinomial option. For between-subjects data,
nnet::multinom() can address this need, but it cannot handle random
factors and therefore cannot handle repeated measures. To address this
gap, we transform nominal response data into counts for each categorical
alternative. These counts are then analyzed using (mixed) Poisson regression
as per Baker (1994) <doi:10.2307/2348134>. Omnibus analyses of variance can be
run along with post hoc pairwise comparisons. For users wishing to analyze nominal
responses from surveys or experiments, the functions in this package essentially
act as though stats::glm() or lme4::glmer() had a family=multinomial option.
Author: Jacob O. Wobbrock [aut, cre, cph]
Maintainer: Jacob O. Wobbrock <wobbrock@uw.edu>
Diff between multpois versions 0.2.0 dated 2024-10-22 and 0.3.2 dated 2025-01-29
DESCRIPTION | 8 - MD5 | 64 ++++----- NAMESPACE | 1 NEWS.md | 47 ++++++ R/Anova.mp.R | 25 +-- R/Data.R | 22 +-- R/glm.mp.R | 15 +- R/glm.mp.con.R | 9 - R/glmer.mp.R | 33 +++- R/glmer.mp.con.R | 38 ++++- README.md | 28 +-- build/partial.rdb |binary build/vignette.rds |binary data/bs2.rda |binary data/bs3.rda |binary data/icecream.rda |binary data/ws2.rda |binary data/ws3.rda |binary inst/WORDLIST | 1 inst/doc/multpois.R | 42 ++--- inst/doc/multpois.Rmd | 104 +++++++------- inst/doc/multpois.html | 345 ++++++++++++++++++++++++------------------------- man/Anova.mp.Rd | 8 - man/bs2.Rd | 2 man/bs3.Rd | 2 man/glm.mp.Rd | 6 man/glm.mp.con.Rd | 3 man/glmer.mp.Rd | 14 + man/glmer.mp.con.Rd | 17 +- man/icecream.Rd | 12 - man/ws2.Rd | 2 man/ws3.Rd | 4 vignettes/multpois.Rmd | 104 +++++++------- 33 files changed, 545 insertions(+), 411 deletions(-)
Title: Extract, Format, and Print Statistical Output
Description: Provides functions that format statistical output in a way that
can be inserted into R Markdown documents. This is analogous to the
apa_print() functions in the 'papaja' package but prints Markdown
or LaTeX syntax.
Author: Jeffrey R. Stevens [aut, cre, cph]
Maintainer: Jeffrey R. Stevens <jeffrey.r.stevens@protonmail.com>
Diff between cocoon versions 0.1.0 dated 2024-11-05 and 0.2.0 dated 2025-01-29
DESCRIPTION | 12 MD5 | 89 +++-- NAMESPACE | 6 NEWS.md | 6 R/cocoon-package.R | 2 R/format_numbers.R | 44 +- R/format_stats.R | 313 +----------------- R/format_stats_BFBayesFactor.R |only R/format_stats_aov.R |only R/format_stats_easycorrelation.R |only R/format_stats_htest.R |only R/format_stats_lm.R |only R/format_stats_lmerTest.R |only R/format_stats_merMod.R |only R/format_statvalues.R | 127 ++++--- R/format_summary.R | 137 ++++---- R/import-standalone-obj-type.R |only R/import-standalone-types-check.R |only R/utils.R |only README.md | 22 + build/vignette.rds |binary inst/CITATION | 4 inst/doc/cocoon.R | 32 + inst/doc/cocoon.Rmd | 108 +++++- inst/doc/cocoon.html | 354 +++++++++++++++++++-- inst/logo/logo.R | 14 man/format_bf.Rd | 20 - man/format_chr.Rd | 6 man/format_corr.Rd | 18 - man/format_num.Rd | 6 man/format_p.Rd | 12 man/format_scientific.Rd | 6 man/format_stats.BFBayesFactor.Rd | 22 - man/format_stats.Rd | 27 + man/format_stats.aov.Rd |only man/format_stats.easycorrelation.Rd | 20 - man/format_stats.htest.Rd | 24 - man/format_stats.lm.Rd |only man/format_stats.lmerModLmerTest.Rd |only man/format_stats.merMod.Rd |only man/format_sub.Rd | 4 man/format_summary.Rd | 28 - man/format_ttest.Rd | 24 - tests/testthat/helper.R | 16 tests/testthat/test-format_numbers.R | 26 - tests/testthat/test-format_stats.R | 196 ----------- tests/testthat/test-format_stats_BFBayesFactor.R |only tests/testthat/test-format_stats_aov.R |only tests/testthat/test-format_stats_easycorrelation.R |only tests/testthat/test-format_stats_htest.R |only tests/testthat/test-format_stats_lm.R |only tests/testthat/test-format_stats_lmerModLmerTest.R |only tests/testthat/test-format_stats_merMod.R |only tests/testthat/test-format_statvalues.R | 32 - tests/testthat/test-format_summary.R | 18 - vignettes/cocoon.Rmd | 108 +++++- 56 files changed, 1013 insertions(+), 870 deletions(-)
Title: Network Analysis and Causal Inference Through Structural
Equation Modeling
Description: Estimate networks and causal relationships in complex systems through
Structural Equation Modeling. This package also includes functions for importing,
weight, manipulate, and fit biological network models within the
Structural Equation Modeling framework as outlined in the Supplementary Material of
Grassi M, Palluzzi F, Tarantino B (2022) <doi:10.1093/bioinformatics/btac567>.
Author: Mario Grassi [aut],
Fernando Palluzzi [aut],
Barbara Tarantino [cre]
Maintainer: Barbara Tarantino <barbara.tarantino01@universitadipavia.it>
Diff between SEMgraph versions 1.2.2 dated 2024-07-22 and 1.2.3 dated 2025-01-29
DESCRIPTION | 18 +++++------ MD5 | 30 +++++++++---------- NEWS.md | 7 +++- R/ALSdata.R | 2 - R/keggInteractome.R | 7 +--- R/keggPathways.R | 4 +- R/semFit.R | 54 +++++++++++++++++------------------ R/semLearn.R | 24 ++++++++------- R/semUtils.R | 72 ++++++++++++++++++++++------------------------- build/partial.rdb |binary data/kegg.RData |binary data/kegg.pathways.RData |binary man/SEMdag.Rd | 2 - man/alsData.Rd | 2 - man/kegg.Rd | 7 +--- man/kegg.pathways.Rd | 4 +- 16 files changed, 117 insertions(+), 116 deletions(-)
Title: Nonnegative Garrote Method Incorporating Hierarchical
Relationships
Description: An implementation of the nonnegative garrote method that incorporates hierarchical relationships among variables. The core function, HiGarrote(), offers an automated approach for analyzing experiments while respecting hierarchical structures among effects. For methodological details, refer to Yu and Joseph (2024) <doi:10.48550/arXiv.2411.01383>. This work is supported by U.S. National Science Foundation grant DMS-2310637.
Author: Wei-Yang Yu [aut, cre],
V. Roshan Joseph [aut]
Maintainer: Wei-Yang Yu <wyu322@gatech.edu>
Diff between HiGarrote versions 1.0 dated 2024-11-14 and 1.0.1 dated 2025-01-29
DESCRIPTION | 8 ++-- MD5 | 11 +++--- NEWS.md |only R/HiGarrote.R | 7 +++- R/RcppExports.R | 12 ++++++- src/RcppExports.cpp | 45 ++++++++++++++++++++++----- src/lib.cpp | 84 +++++++++++++++++++++++++++++++++++----------------- 7 files changed, 120 insertions(+), 47 deletions(-)
Title: Create the Tree of Science from WoS and Scopus
Description: The goal of 'tosr' is to create the Tree of Science from
Web of Science (WoS) and Scopus data. It can read files
from both sources at the same time. More information
can be found in Valencia-Hernández (2020)
<https://revistas.unal.edu.co/index.php/ingeinv/article/view/77718>.
Author: Sebastian Robledo [aut, cre] ,
Martha Zuluaga [aut] ,
Oscar Arbelaez Echeverry [aut]
,
Luis Alexander Valencia Hernandez [aut],
Centro de Bioinformatica y Biologia computacional de Colombia - BIOS
[cph, fnd]
Maintainer: Sebastian Robledo <sebastian.robledo@gmail.com>
Diff between tosr versions 0.1.4 dated 2024-01-14 and 0.1.5 dated 2025-01-29
DESCRIPTION | 54 ++++++++++++++++++++-------------------- MD5 | 11 ++++---- NEWS.md |only build/vignette.rds |binary inst/doc/ToS-dummy.R | 2 - inst/doc/ToS-dummy.html | 4 +- tests/testthat/test-tosr_load.R | 2 - 7 files changed, 37 insertions(+), 36 deletions(-)
Title: Helpers for Model Coefficients Tibbles
Description: Provides suite of functions to work with regression model
'broom::tidy()' tibbles. The suite includes functions to group
regression model terms by variable, insert reference and header rows
for categorical variables, add variable labels, and more.
Author: Joseph Larmarange [aut, cre] ,
Daniel D. Sjoberg [aut]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between broom.helpers versions 1.18.0 dated 2025-01-07 and 1.19.0 dated 2025-01-29
DESCRIPTION | 11 MD5 | 90 ++-- NAMESPACE | 1 NEWS.md | 8 R/broom.helpers-package.R | 1 R/custom_tidiers.R | 2 R/marginal_tidiers.R | 89 ---- R/model_get_pairwise_contrasts.R | 3 R/select_utilities.R | 8 R/tidy_add_pairwise_contrasts.R | 2 build/vignette.rds |binary inst/doc/tidy.html | 330 +++++++-------- man/model_get_pairwise_contrasts.Rd | 3 man/tidy_add_pairwise_contrasts.Rd | 2 man/tidy_all_effects.Rd | 2 man/tidy_avg_comparisons.Rd | 2 man/tidy_avg_slopes.Rd | 2 man/tidy_ggpredict.Rd | 2 man/tidy_marginal_contrasts.Rd | 2 man/tidy_marginal_means.Rd | 56 -- man/tidy_marginal_predictions.Rd | 2 man/tidy_margins.Rd | 1 man/tidy_multgee.Rd | 1 man/tidy_zeroinfl.Rd | 1 tests/testthat.R | 8 tests/testthat/test-add_coefficients_type.R | 106 ++--- tests/testthat/test-add_contrasts.R | 60 +- tests/testthat/test-add_estimate_to_reference_rows.R | 92 ++-- tests/testthat/test-add_header_rows.R | 60 +- tests/testthat/test-add_n.R | 150 +++---- tests/testthat/test-add_pairwise_contrasts.R | 14 tests/testthat/test-add_reference_rows.R | 41 + tests/testthat/test-add_term_labels.R | 125 +++--- tests/testthat/test-add_variable_labels.R | 99 ++-- tests/testthat/test-assert_package.R | 15 tests/testthat/test-attach_and_detach.R | 7 tests/testthat/test-disambiguate_terms.R | 16 tests/testthat/test-helpers.R | 5 tests/testthat/test-identify_variables.R | 164 ++++--- tests/testthat/test-marginal_tidiers.R | 266 ++++-------- tests/testthat/test-model_get_n.R | 217 +++++----- tests/testthat/test-remove_intercept.R | 5 tests/testthat/test-select_helpers.R | 5 tests/testthat/test-select_variables.R | 40 - tests/testthat/test-tidy_parameters.R | 35 - tests/testthat/test-tidy_plus_plus.R | 394 ++++++++----------- 46 files changed, 1180 insertions(+), 1365 deletions(-)
More information about reproducibleRchunks at CRAN
Permanent link
Title: Quantile Regression
Description: Estimation and inference methods for models for conditional quantile functions:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also now included. See Koenker, R. (2005) Quantile Regression, Cambridge U. Press,
<doi:10.1017/CBO9780511754098> and Koenker, R. et al. (2017) Handbook of Quantile Regression,
CRC Press, <doi:10.1201/9781315120256>.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] ,
Pin Tian Ng [ctb] ,
Blaise Melly [ctb] ,
Achim Zeileis [ctb] ,
Philip Grosjean [ctb] ,
Cleve Moler [ctb] ,
Yousef Saad [ctb] ,
Victor Chernozhukov [ctb] ,
Ivan Fernandez-Val [ctb] ,
Martin Maechler [c [...truncated...]
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.99.1 dated 2024-11-22 and 6.00 dated 2025-01-29
DESCRIPTION | 6 +++--- MD5 | 4 ++-- build/vignette.rds |binary 3 files changed, 5 insertions(+), 5 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020)
<DOI:10.18637/jss.v092.i01>. Shift-scale (Siegfried et al, 2023, <DOI:10.1080/00031305.2023.2203177>)
and multivariate (Klein et al, 2022, <DOI:10.1111/sjos.12501>) transformation models
are part of this package. A package vignette is available from <DOI:10.32614/CRAN.package.mlt.docreg> and
more convenient user interfaces to many models from <DOI:10.32614/CRAN.package.tram>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.6-1 dated 2024-11-18 and 1.6-2 dated 2025-01-29
DESCRIPTION | 15 ++++++++------- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/mlt.R | 12 ++++++++++-- R/mmlt.R | 4 +++- inst/NEWS.Rd | 10 ++++++++++ tests/bugfixes.R | 17 +++++++---------- tests/bugfixes.Rout.save | 33 +++++++++------------------------ 8 files changed, 55 insertions(+), 52 deletions(-)
Title: A Tool for Semi-Automating the Statistical Disclosure Control of
Research Outputs
Description: Assists researchers and output checkers by distinguishing between research output that is safe to publish, output that requires further analysis, and output that cannot be published because of substantial disclosure risk. A paper about the tool was presented at the UNECE Expert Meeting on Statistical Data Confidentiality 2023; see <https://uwe-repository.worktribe.com/output/11060964>.
Author: Jim Smith [cre, ctb] ,
Maha Albashir [aut, ctb],
Richard John Preen [aut, ctb]
Maintainer: Jim Smith <James.Smith@uwe.ac.uk>
Diff between acro versions 0.1.3 dated 2024-10-22 and 0.1.4 dated 2025-01-29
DESCRIPTION | 8 +++---- MD5 | 10 ++++----- NEWS.md | 4 +++ R/create_virtualenv.R | 4 +-- README.md | 49 +++++++++++++--------------------------------- tests/testthat/Rplots.pdf |binary 6 files changed, 29 insertions(+), 46 deletions(-)
Title: Transformation Trees and Forests
Description: Recursive partytioning of transformation models with
corresponding random forest for conditional transformation models
as described in 'Transformation Forests' (Hothorn and Zeileis, 2021, <doi:10.1080/10618600.2021.1872581>)
and 'Top-Down Transformation Choice' (Hothorn, 2018, <DOI:10.1177/1471082X17748081>).
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between trtf versions 0.4-2 dated 2023-02-10 and 0.4-3 dated 2025-01-29
DESCRIPTION | 12 +++++++----- MD5 | 14 +++++++------- build/partial.rdb |binary demo/00Index | 6 +++--- demo/BMI.R | 50 +++++++++++++++++++++++++++++++++----------------- demo/QRF.R | 12 +++++++++++- demo/applications.R | 43 ++++++++++++++++++++++++------------------- inst/NEWS.Rd | 7 +++++++ 8 files changed, 92 insertions(+), 52 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre] ,
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-26 dated 2024-07-18 and 1.4-28 dated 2025-01-29
DESCRIPTION | 11 ++++++----- MD5 | 28 ++++++++++++++-------------- build/vignette.rds |binary data/cholesterol.rda |binary data/litter.rda |binary demo/Ch_Appl.R | 10 +++++----- demo/Ch_GLM.R | 2 +- demo/Ch_Intro.R | 2 +- demo/Ch_Misc.R | 1 + demo/Ch_Theory.R | 2 +- inst/NEWS | 8 ++++++++ inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary tests/Examples/multcomp-Ex.Rout.save | 8 ++++---- 15 files changed, 41 insertions(+), 31 deletions(-)
Title: Tools for Reading and Writing ISO/OGC Geographic Metadata
Description: Provides facilities to read, write and validate geographic metadata
defined with ISO TC211 / OGC ISO geographic information metadata standards, and
encoded using the ISO 19139 and ISO 19115-3 (XML) standard technical specifications.
This includes ISO 19110 (Feature cataloguing), 19115 (dataset metadata), 19119 (service metadata)
and 19136 (GML). Other interoperable schemas from the OGC are progressively supported
as well, such as the Sensor Web Enablement (SWE) Common Data Model, the OGC GML
Coverage Implementation Schema (GMLCOV), or the OGC GML Referenceable Grid (GMLRGRID).
Author: Emmanuel Blondel [aut, cre] ,
R Consortium [fnd]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geometa versions 0.8-0 dated 2024-04-18 and 0.9 dated 2025-01-29
geometa-0.8-0/geometa/R/ISOHierarchyLevel.R |only geometa-0.8-0/geometa/R/ISOIdentifier.R |only geometa-0.8-0/geometa/R/ISOParameter.R |only geometa-0.8-0/geometa/R/ISOStatus.R |only geometa-0.8-0/geometa/R/readISO19139.R |only geometa-0.8-0/geometa/inst/extdata/schemas/gco |only geometa-0.8-0/geometa/inst/extdata/schemas/gfc |only geometa-0.8-0/geometa/inst/extdata/schemas/gmd |only geometa-0.8-0/geometa/inst/extdata/schemas/gmi |only geometa-0.8-0/geometa/inst/extdata/schemas/gmx |only geometa-0.8-0/geometa/inst/extdata/schemas/gsr |only geometa-0.8-0/geometa/inst/extdata/schemas/gss |only geometa-0.8-0/geometa/inst/extdata/schemas/gts |only geometa-0.8-0/geometa/inst/extdata/schemas/srv |only geometa-0.8-0/geometa/man/ISOContentInformation.Rd |only geometa-0.8-0/geometa/man/ISOHierarchyLevel.Rd |only geometa-0.8-0/geometa/man/ISOIdentifier.Rd |only geometa-0.8-0/geometa/man/ISOParameter.Rd |only geometa-0.8-0/geometa/tests/testthat/test_ISOIdentifier.R |only geometa-0.8-0/geometa/tests/testthat/test_ISOParameter.R |only geometa-0.8-0/geometa/tests/testthat/test_ISOScope.R |only geometa-0.9/geometa/DESCRIPTION | 19 geometa-0.9/geometa/MD5 | 1915 ++++++---- geometa-0.9/geometa/NAMESPACE | 101 geometa-0.9/geometa/R/GMLAbstractCRS.R | 8 geometa-0.9/geometa/R/GMLAbstractCoordinateOperation.R | 8 geometa-0.9/geometa/R/GMLAbstractCoordinateSystem.R | 8 geometa-0.9/geometa/R/GMLAbstractCoverage.R | 8 geometa-0.9/geometa/R/GMLAbstractCurve.R | 4 geometa-0.9/geometa/R/GMLAbstractDiscreteCoverage.R | 8 geometa-0.9/geometa/R/GMLAbstractFeature.R | 8 geometa-0.9/geometa/R/GMLAbstractGML.R | 8 geometa-0.9/geometa/R/GMLAbstractGeneralConversion.R | 4 geometa-0.9/geometa/R/GMLAbstractGeneralDerivedCRS.R | 4 geometa-0.9/geometa/R/GMLAbstractGeneralOperationParameter.R | 4 geometa-0.9/geometa/R/GMLAbstractGeneralParameterValue.R | 8 geometa-0.9/geometa/R/GMLAbstractGeometricAggregate.R | 4 geometa-0.9/geometa/R/GMLAbstractGeometricPrimitive.R | 4 geometa-0.9/geometa/R/GMLAbstractGeometry.R | 14 geometa-0.9/geometa/R/GMLAbstractImplicitGeometry.R | 8 geometa-0.9/geometa/R/GMLAbstractObject.R | 10 geometa-0.9/geometa/R/GMLAbstractReferenceableGrid.R | 8 geometa-0.9/geometa/R/GMLAbstractRing.R | 4 geometa-0.9/geometa/R/GMLAbstractSingleCRS.R | 4 geometa-0.9/geometa/R/GMLAbstractSingleOperation.R | 4 geometa-0.9/geometa/R/GMLAbstractSurface.R | 4 geometa-0.9/geometa/R/GMLAbstractTimeGeometricPrimitive.R | 8 geometa-0.9/geometa/R/GMLAbstractTimeObject.R | 8 geometa-0.9/geometa/R/GMLAbstractTimePrimitive.R | 8 geometa-0.9/geometa/R/GMLAffineCS.R | 4 geometa-0.9/geometa/R/GMLBaseUnit.R | 8 geometa-0.9/geometa/R/GMLCOVAbstractCoverage.R | 10 geometa-0.9/geometa/R/GMLCOVExtension.R | 8 geometa-0.9/geometa/R/GMLCartesianCS.R | 4 geometa-0.9/geometa/R/GMLCodeType.R | 8 geometa-0.9/geometa/R/GMLCompoundCRS.R | 8 geometa-0.9/geometa/R/GMLConventionalUnit.R | 8 geometa-0.9/geometa/R/GMLConversion.R | 4 geometa-0.9/geometa/R/GMLCoordinateSystemAxis.R | 8 geometa-0.9/geometa/R/GMLCoverages.R | 38 geometa-0.9/geometa/R/GMLCylindricalCS.R | 4 geometa-0.9/geometa/R/GMLDefinition.R | 8 geometa-0.9/geometa/R/GMLDerivedCRS.R | 4 geometa-0.9/geometa/R/GMLDerivedUnit.R | 8 geometa-0.9/geometa/R/GMLElement.R | 10 geometa-0.9/geometa/R/GMLEllipsoidalCS.R | 4 geometa-0.9/geometa/R/GMLEnvelope.R | 10 geometa-0.9/geometa/R/GMLEnvelopeWithTimePeriod.R | 10 geometa-0.9/geometa/R/GMLGeneralGridAxis.R | 10 geometa-0.9/geometa/R/GMLGeodeticCRS.R | 4 geometa-0.9/geometa/R/GMLGrid.R | 8 geometa-0.9/geometa/R/GMLGridEnvelope.R | 6 geometa-0.9/geometa/R/GMLGridFunction.R | 8 geometa-0.9/geometa/R/GMLLineString.R | 8 geometa-0.9/geometa/R/GMLLinearCS.R | 6 geometa-0.9/geometa/R/GMLLinearRing.R | 8 geometa-0.9/geometa/R/GMLMultiCurve.R | 8 geometa-0.9/geometa/R/GMLMultiPoint.R | 8 geometa-0.9/geometa/R/GMLMultiSurface.R | 8 geometa-0.9/geometa/R/GMLObliqueCartesianCS.R | 6 geometa-0.9/geometa/R/GMLOperationMethod.R | 6 geometa-0.9/geometa/R/GMLOperationParameter.R | 6 geometa-0.9/geometa/R/GMLOperationParameterGroup.R | 6 geometa-0.9/geometa/R/GMLParameterValue.R | 8 geometa-0.9/geometa/R/GMLParameterValueGroup.R | 8 geometa-0.9/geometa/R/GMLPoint.R | 8 geometa-0.9/geometa/R/GMLPolarCS.R | 6 geometa-0.9/geometa/R/GMLPolygon.R | 8 geometa-0.9/geometa/R/GMLProjectedCRS.R | 6 geometa-0.9/geometa/R/GMLRectifiedGrid.R | 8 geometa-0.9/geometa/R/GMLReferenceableGridByArray.R | 8 geometa-0.9/geometa/R/GMLReferenceableGridByTransformation.R | 8 geometa-0.9/geometa/R/GMLReferenceableGridByVectors.R | 8 geometa-0.9/geometa/R/GMLShericalCS.R | 6 geometa-0.9/geometa/R/GMLTemporalCRS.R | 6 geometa-0.9/geometa/R/GMLTemporalCS.R | 6 geometa-0.9/geometa/R/GMLTimeCS.R | 6 geometa-0.9/geometa/R/GMLTimeInstant.R | 6 geometa-0.9/geometa/R/GMLTimePeriod.R | 6 geometa-0.9/geometa/R/GMLUnitDefinition.R | 8 geometa-0.9/geometa/R/GMLUserDefinedCS.R | 6 geometa-0.9/geometa/R/GMLVerticalCRS.R | 6 geometa-0.9/geometa/R/GMLVerticalCS.R | 6 geometa-0.9/geometa/R/INSPIREMetadataValidator.R | 14 geometa-0.9/geometa/R/ISOAbstractAcquisitionInformation.R |only geometa-0.9/geometa/R/ISOAbstractAggregate.R | 8 geometa-0.9/geometa/R/ISOAbstractApplicationSchemaInformation.R |only geometa-0.9/geometa/R/ISOAbstractCarrierOfCharacteristics.R | 8 geometa-0.9/geometa/R/ISOAbstractCatalogue.R | 21 geometa-0.9/geometa/R/ISOAbstractCitation.R |only geometa-0.9/geometa/R/ISOAbstractConstraints.R |only geometa-0.9/geometa/R/ISOAbstractContentInformation.R |only geometa-0.9/geometa/R/ISOAbstractDataEvaluation.R |only geometa-0.9/geometa/R/ISOAbstractDataQuality.R |only geometa-0.9/geometa/R/ISOAbstractDistribution.R |only geometa-0.9/geometa/R/ISOAbstractExtent.R |only geometa-0.9/geometa/R/ISOAbstractFeatureCatalogue.R |only geometa-0.9/geometa/R/ISOAbstractFeatureType.R |only geometa-0.9/geometa/R/ISOAbstractFormat.R |only geometa-0.9/geometa/R/ISOAbstractGenericName.R | 8 geometa-0.9/geometa/R/ISOAbstractLineageInformation.R |only geometa-0.9/geometa/R/ISOAbstractMaintenanceInformation.R |only geometa-0.9/geometa/R/ISOAbstractMetadata.R |only geometa-0.9/geometa/R/ISOAbstractMetadataExtension.R |only geometa-0.9/geometa/R/ISOAbstractMetaquality.R |only geometa-0.9/geometa/R/ISOAbstractObject.R | 219 - geometa-0.9/geometa/R/ISOAbstractOnlineResource.R |only geometa-0.9/geometa/R/ISOAbstractParameter.R |only geometa-0.9/geometa/R/ISOAbstractParty.R |only geometa-0.9/geometa/R/ISOAbstractPlatform.R |only geometa-0.9/geometa/R/ISOAbstractPortrayalCatalogueInformation.R |only geometa-0.9/geometa/R/ISOAbstractPropertyType.R | 53 geometa-0.9/geometa/R/ISOAbstractQualityElement.R |only geometa-0.9/geometa/R/ISOAbstractRSReferenceSystem.R |only geometa-0.9/geometa/R/ISOAbstractReferenceSystem.R | 76 geometa-0.9/geometa/R/ISOAbstractResourceDescription.R |only geometa-0.9/geometa/R/ISOAbstractResponsibility.R |only geometa-0.9/geometa/R/ISOAbstractResult.R | 23 geometa-0.9/geometa/R/ISOAbstractSpatialRepresentation.R |only geometa-0.9/geometa/R/ISOAbstractSpatialResolution.R |only geometa-0.9/geometa/R/ISOAbstractStandardOrderProcess.R |only geometa-0.9/geometa/R/ISOAbstractTemporalQuality.R |only geometa-0.9/geometa/R/ISOAbstractTypedDate.R |only geometa-0.9/geometa/R/ISOAddress.R | 74 geometa-0.9/geometa/R/ISOAggregateInformation.R | 6 geometa-0.9/geometa/R/ISOAnchor.R | 17 geometa-0.9/geometa/R/ISOAngle.R | 17 geometa-0.9/geometa/R/ISOApplicationSchemaInformation.R | 21 geometa-0.9/geometa/R/ISOAssociatedResource.R |only geometa-0.9/geometa/R/ISOAssociation.R | 8 geometa-0.9/geometa/R/ISOAssociationRole.R | 8 geometa-0.9/geometa/R/ISOAssociationType.R | 17 geometa-0.9/geometa/R/ISOAttributeGroup.R |only geometa-0.9/geometa/R/ISOAttributes.R | 6 geometa-0.9/geometa/R/ISOBand.R | 18 geometa-0.9/geometa/R/ISOBaseBoolean.R | 17 geometa-0.9/geometa/R/ISOBaseCharacterString.R | 17 geometa-0.9/geometa/R/ISOBaseDate.R | 17 geometa-0.9/geometa/R/ISOBaseDateTime.R | 17 geometa-0.9/geometa/R/ISOBaseDecimal.R | 17 geometa-0.9/geometa/R/ISOBaseInteger.R | 17 geometa-0.9/geometa/R/ISOBaseReal.R | 17 geometa-0.9/geometa/R/ISOBinary.R | 17 geometa-0.9/geometa/R/ISOBinding.R | 6 geometa-0.9/geometa/R/ISOBoundAssociationRole.R | 6 geometa-0.9/geometa/R/ISOBoundFeatureAttribute.R | 6 geometa-0.9/geometa/R/ISOBoundingPolygon.R | 17 geometa-0.9/geometa/R/ISOBrowseGraphic.R | 17 geometa-0.9/geometa/R/ISOCTCodelistValue.R |only geometa-0.9/geometa/R/ISOCarrierOfCharacteristics.R | 8 geometa-0.9/geometa/R/ISOCellGeometry.R | 24 geometa-0.9/geometa/R/ISOCharacterSet.R | 17 geometa-0.9/geometa/R/ISOCitation.R | 163 geometa-0.9/geometa/R/ISOCitationSeries.R | 13 geometa-0.9/geometa/R/ISOClassification.R | 17 geometa-0.9/geometa/R/ISOCodeDefinition.R |only geometa-0.9/geometa/R/ISOCodeListDictionary.R |only geometa-0.9/geometa/R/ISOCodeListValue.R | 88 geometa-0.9/geometa/R/ISOCodelist.R | 479 +- geometa-0.9/geometa/R/ISOCodelistCatalogue.R |only geometa-0.9/geometa/R/ISOConformanceResult.R | 42 geometa-0.9/geometa/R/ISOConstraint.R | 8 geometa-0.9/geometa/R/ISOConstraints.R | 115 geometa-0.9/geometa/R/ISOContact.R | 155 geometa-0.9/geometa/R/ISOContentInformation.R | 23 geometa-0.9/geometa/R/ISOCountry.R | 22 geometa-0.9/geometa/R/ISOCoupledResource.R | 10 geometa-0.9/geometa/R/ISOCouplingType.R | 12 geometa-0.9/geometa/R/ISOCoverageContentType.R | 21 geometa-0.9/geometa/R/ISOCoverageDescription.R | 19 geometa-0.9/geometa/R/ISODCPList.R | 12 geometa-0.9/geometa/R/ISODataFile.R | 8 geometa-0.9/geometa/R/ISODataIdentification.R | 325 - geometa-0.9/geometa/R/ISODataIdentification19115_3.R |only geometa-0.9/geometa/R/ISODataIdentification19139.R |only geometa-0.9/geometa/R/ISODataQuality.R | 50 geometa-0.9/geometa/R/ISODataQualityAbstractElement.R | 112 geometa-0.9/geometa/R/ISODataQualityCompleteness.R | 39 geometa-0.9/geometa/R/ISODataQualityLogicalConsistency.R | 67 geometa-0.9/geometa/R/ISODataQualityPositionalAccuracy.R | 52 geometa-0.9/geometa/R/ISODataQualityScope.R |only geometa-0.9/geometa/R/ISODataQualityTemporalAccuracy.R | 54 geometa-0.9/geometa/R/ISODataQualityThematicAccuracy.R | 79 geometa-0.9/geometa/R/ISODataSet.R | 8 geometa-0.9/geometa/R/ISODatatype.R | 8 geometa-0.9/geometa/R/ISODate.R | 26 geometa-0.9/geometa/R/ISODateType.R | 17 geometa-0.9/geometa/R/ISODefinitionReference.R | 6 geometa-0.9/geometa/R/ISODefinitionSource.R | 8 geometa-0.9/geometa/R/ISODescriptiveResult.R |only geometa-0.9/geometa/R/ISODigitalTransferOptions.R | 41 geometa-0.9/geometa/R/ISODimension.R | 17 geometa-0.9/geometa/R/ISODimensionNameType.R | 17 geometa-0.9/geometa/R/ISODistance.R | 26 geometa-0.9/geometa/R/ISODistribution.R | 17 geometa-0.9/geometa/R/ISODistributionUnits.R | 8 geometa-0.9/geometa/R/ISODistributor.R | 67 geometa-0.9/geometa/R/ISOElementSequence.R | 8 geometa-0.9/geometa/R/ISOEvaluationMethod.R |only geometa-0.9/geometa/R/ISOEvaluationMethodType.R | 17 geometa-0.9/geometa/R/ISOExtendedElementInformation.R | 8 geometa-0.9/geometa/R/ISOExtent.R | 17 geometa-0.9/geometa/R/ISOFeatureAssociation.R | 124 geometa-0.9/geometa/R/ISOFeatureAttribute.R | 22 geometa-0.9/geometa/R/ISOFeatureCatalogue.R | 25 geometa-0.9/geometa/R/ISOFeatureCatalogueDescription.R | 45 geometa-0.9/geometa/R/ISOFeatureOperation.R | 8 geometa-0.9/geometa/R/ISOFeatureType.R | 198 - geometa-0.9/geometa/R/ISOFeatureType19115_3.R |only geometa-0.9/geometa/R/ISOFeatureType19139.R |only geometa-0.9/geometa/R/ISOFeatureTypeInfo.R |only geometa-0.9/geometa/R/ISOFileName.R | 17 geometa-0.9/geometa/R/ISOFormat.R | 114 geometa-0.9/geometa/R/ISOFreeText.R | 17 geometa-0.9/geometa/R/ISOGeographicBoundingBox.R | 17 geometa-0.9/geometa/R/ISOGeographicDescription.R | 17 geometa-0.9/geometa/R/ISOGeographicExtent.R | 17 geometa-0.9/geometa/R/ISOGeometricObjectType.R | 17 geometa-0.9/geometa/R/ISOGeometricObjects.R | 17 geometa-0.9/geometa/R/ISOGeorectified.R | 17 geometa-0.9/geometa/R/ISOGeoreferenceable.R | 17 geometa-0.9/geometa/R/ISOGridSpatialRepresentation.R | 17 geometa-0.9/geometa/R/ISOIdentification.R | 326 - geometa-0.9/geometa/R/ISOIdentification19115_3.R |only geometa-0.9/geometa/R/ISOIdentification19139.R |only geometa-0.9/geometa/R/ISOImageDescription.R | 17 geometa-0.9/geometa/R/ISOImageryAcquisitionInformation.R | 29 geometa-0.9/geometa/R/ISOImageryAlgorithm.R | 17 geometa-0.9/geometa/R/ISOImageryBand.R | 19 geometa-0.9/geometa/R/ISOImageryBandDefinition.R | 17 geometa-0.9/geometa/R/ISOImageryContext.R | 17 geometa-0.9/geometa/R/ISOImageryCoverageDescription.R | 17 geometa-0.9/geometa/R/ISOImageryCoverageResult.R | 59 geometa-0.9/geometa/R/ISOImageryEnvironmentalRecord.R | 47 geometa-0.9/geometa/R/ISOImageryEvent.R | 17 geometa-0.9/geometa/R/ISOImageryGCP.R | 15 geometa-0.9/geometa/R/ISOImageryGCPCollection.R | 46 geometa-0.9/geometa/R/ISOImageryGeolocationInformation.R | 15 geometa-0.9/geometa/R/ISOImageryGeometryType.R | 17 geometa-0.9/geometa/R/ISOImageryGeorectified.R | 17 geometa-0.9/geometa/R/ISOImageryGeoreferenceable.R | 17 geometa-0.9/geometa/R/ISOImageryImageDescription.R | 17 geometa-0.9/geometa/R/ISOImageryInstrument.R | 83 geometa-0.9/geometa/R/ISOImageryMetadata.R | 17 geometa-0.9/geometa/R/ISOImageryNominalResolution.R | 17 geometa-0.9/geometa/R/ISOImageryObjective.R | 17 geometa-0.9/geometa/R/ISOImageryObjectiveType.R | 17 geometa-0.9/geometa/R/ISOImageryOperation.R | 39 geometa-0.9/geometa/R/ISOImageryOperationType.R | 17 geometa-0.9/geometa/R/ISOImageryPlan.R | 17 geometa-0.9/geometa/R/ISOImageryPlatform.R | 61 geometa-0.9/geometa/R/ISOImageryPlatformPass.R | 17 geometa-0.9/geometa/R/ISOImageryPolarisationOrientation.R | 17 geometa-0.9/geometa/R/ISOImageryPriority.R | 17 geometa-0.9/geometa/R/ISOImageryProcessStep.R | 17 geometa-0.9/geometa/R/ISOImageryProcessStepReport.R | 17 geometa-0.9/geometa/R/ISOImageryProcessing.R | 17 geometa-0.9/geometa/R/ISOImageryRangeElementDescription.R | 17 geometa-0.9/geometa/R/ISOImageryRequestedDate.R | 17 geometa-0.9/geometa/R/ISOImageryRequirement.R | 17 geometa-0.9/geometa/R/ISOImageryRevision.R |only geometa-0.9/geometa/R/ISOImagerySensor.R |only geometa-0.9/geometa/R/ISOImagerySensorType.R | 38 geometa-0.9/geometa/R/ISOImagerySequence.R | 17 geometa-0.9/geometa/R/ISOImagerySource.R | 17 geometa-0.9/geometa/R/ISOImageryTransferFunctionType.R | 17 geometa-0.9/geometa/R/ISOImageryTrigger.R | 17 geometa-0.9/geometa/R/ISOImageryUsability.R | 8 geometa-0.9/geometa/R/ISOImagingCondition.R | 17 geometa-0.9/geometa/R/ISOIndividual.R |only geometa-0.9/geometa/R/ISOInheritanceRelation.R | 6 geometa-0.9/geometa/R/ISOInitiative.R | 8 geometa-0.9/geometa/R/ISOInitiativeType.R | 17 geometa-0.9/geometa/R/ISOInstrumentationEvent.R |only geometa-0.9/geometa/R/ISOInstrumentationEventList.R |only geometa-0.9/geometa/R/ISOInstrumentationEventType.R |only geometa-0.9/geometa/R/ISOKeywordClass.R |only geometa-0.9/geometa/R/ISOKeywordType.R | 17 geometa-0.9/geometa/R/ISOKeywords.R | 15 geometa-0.9/geometa/R/ISOLanguage.R | 17 geometa-0.9/geometa/R/ISOLegalConstraints.R | 17 geometa-0.9/geometa/R/ISOLength.R | 17 geometa-0.9/geometa/R/ISOLineage.R | 17 geometa-0.9/geometa/R/ISOListedValue.R | 8 geometa-0.9/geometa/R/ISOLocalName.R | 14 geometa-0.9/geometa/R/ISOLocale.R | 36 geometa-0.9/geometa/R/ISOLocaleContainer.R | 98 geometa-0.9/geometa/R/ISOLocalisedCharacterString.R | 17 geometa-0.9/geometa/R/ISOMDFeatureCatalogue.R |only geometa-0.9/geometa/R/ISOMLCodeDefinition.R |only geometa-0.9/geometa/R/ISOMLCodeListDictionary.R |only geometa-0.9/geometa/R/ISOMaintenanceFrequency.R | 17 geometa-0.9/geometa/R/ISOMaintenanceInformation.R | 17 geometa-0.9/geometa/R/ISOMeasure.R | 19 geometa-0.9/geometa/R/ISOMeasureReference.R |only geometa-0.9/geometa/R/ISOMedium.R | 15 geometa-0.9/geometa/R/ISOMediumFormat.R | 17 geometa-0.9/geometa/R/ISOMediumName.R | 8 geometa-0.9/geometa/R/ISOMemberName.R | 17 geometa-0.9/geometa/R/ISOMetaIdentifier.R | 75 geometa-0.9/geometa/R/ISOMetadata.R | 451 ++ geometa-0.9/geometa/R/ISOMetadataExtensionInformation.R | 8 geometa-0.9/geometa/R/ISOMetadataNamespace.R | 320 + geometa-0.9/geometa/R/ISOMetadataSchemas.R | 136 geometa-0.9/geometa/R/ISOMetadataScope.R |only geometa-0.9/geometa/R/ISOMimeFileType.R | 17 geometa-0.9/geometa/R/ISOMultiplicity.R | 17 geometa-0.9/geometa/R/ISOMultiplicityRange.R | 17 geometa-0.9/geometa/R/ISOObligation.R | 8 geometa-0.9/geometa/R/ISOOnLineFunction.R | 17 geometa-0.9/geometa/R/ISOOnlineResource.R | 23 geometa-0.9/geometa/R/ISOOperationChainMetadata.R |only geometa-0.9/geometa/R/ISOOperationMetadata.R | 24 geometa-0.9/geometa/R/ISOOrganisation.R |only geometa-0.9/geometa/R/ISOOtherAggregate.R | 8 geometa-0.9/geometa/R/ISOParameterDirection.R | 43 geometa-0.9/geometa/R/ISOPeriodDuration.R |only geometa-0.9/geometa/R/ISOPixelOrientation.R | 20 geometa-0.9/geometa/R/ISOPlatform.R | 8 geometa-0.9/geometa/R/ISOPortrayalCatalogueReference.R | 17 geometa-0.9/geometa/R/ISOPresentationForm.R | 17 geometa-0.9/geometa/R/ISOProcessParameter.R |only geometa-0.9/geometa/R/ISOProcessStep.R | 17 geometa-0.9/geometa/R/ISOProductionSeries.R | 8 geometa-0.9/geometa/R/ISOProgress.R |only geometa-0.9/geometa/R/ISOPropertyType.R | 6 geometa-0.9/geometa/R/ISOQualityResultFile.R |only geometa-0.9/geometa/R/ISOQuantitativeResult.R | 44 geometa-0.9/geometa/R/ISORangeDimension.R | 46 geometa-0.9/geometa/R/ISORecord.R | 8 geometa-0.9/geometa/R/ISORecordType.R | 17 geometa-0.9/geometa/R/ISOReferenceIdentifier.R | 39 geometa-0.9/geometa/R/ISOReferenceSystem.R | 56 geometa-0.9/geometa/R/ISOReferenceSystemType.R |only geometa-0.9/geometa/R/ISOReleasability.R |only geometa-0.9/geometa/R/ISORepresentativeFraction.R | 17 geometa-0.9/geometa/R/ISOResolution.R | 17 geometa-0.9/geometa/R/ISOResponsibility.R |only geometa-0.9/geometa/R/ISOResponsibleParty.R | 6 geometa-0.9/geometa/R/ISORestriction.R | 17 geometa-0.9/geometa/R/ISORole.R | 17 geometa-0.9/geometa/R/ISORoleType.R | 8 geometa-0.9/geometa/R/ISOSRVParameter.R |only geometa-0.9/geometa/R/ISOSRVParameterDirection.R |only geometa-0.9/geometa/R/ISOSampleDimension.R |only geometa-0.9/geometa/R/ISOScale.R | 17 geometa-0.9/geometa/R/ISOScope.R | 119 geometa-0.9/geometa/R/ISOScopeCode.R |only geometa-0.9/geometa/R/ISOScopeDescription.R | 17 geometa-0.9/geometa/R/ISOScopedName.R | 17 geometa-0.9/geometa/R/ISOSecurityConstraints.R | 17 geometa-0.9/geometa/R/ISOSensor.R | 8 geometa-0.9/geometa/R/ISOSeries.R | 51 geometa-0.9/geometa/R/ISOServiceIdentification.R | 491 ++ geometa-0.9/geometa/R/ISOSource.R | 17 geometa-0.9/geometa/R/ISOSpatialRepresentation.R | 21 geometa-0.9/geometa/R/ISOSpatialRepresentationType.R | 19 geometa-0.9/geometa/R/ISOSpatialTemporalExtent.R | 17 geometa-0.9/geometa/R/ISOStandaloneQualityReportInformation.R |only geometa-0.9/geometa/R/ISOStandardOrderProcess.R | 42 geometa-0.9/geometa/R/ISOStereoMate.R | 8 geometa-0.9/geometa/R/ISOTelephone.R | 49 geometa-0.9/geometa/R/ISOTelephoneType.R |only geometa-0.9/geometa/R/ISOTemporalExtent.R | 17 geometa-0.9/geometa/R/ISOTopicCategory.R | 17 geometa-0.9/geometa/R/ISOTopologyLevel.R | 17 geometa-0.9/geometa/R/ISOTypeName.R | 17 geometa-0.9/geometa/R/ISOURI.R |only geometa-0.9/geometa/R/ISOURL.R | 6 geometa-0.9/geometa/R/ISOUnlimitedInteger.R | 17 geometa-0.9/geometa/R/ISOUomIdentifier.R |only geometa-0.9/geometa/R/ISOUsabilityElement.R |only geometa-0.9/geometa/R/ISOUsage.R | 39 geometa-0.9/geometa/R/ISOVectorSpatialRepresentation.R | 17 geometa-0.9/geometa/R/ISOVerticalExtent.R | 17 geometa-0.9/geometa/R/SWEAbstractDataComponent.R | 8 geometa-0.9/geometa/R/SWEAbstractEncoding.R | 8 geometa-0.9/geometa/R/SWEAbstractObject.R | 8 geometa-0.9/geometa/R/SWEAbstractSWE.R | 8 geometa-0.9/geometa/R/SWEAbstractSWEIdentifiable.R | 8 geometa-0.9/geometa/R/SWEAbstractSimpleComponent.R | 8 geometa-0.9/geometa/R/SWECategory.R | 8 geometa-0.9/geometa/R/SWECategoryRange.R | 8 geometa-0.9/geometa/R/SWECount.R | 8 geometa-0.9/geometa/R/SWECountRange.R | 8 geometa-0.9/geometa/R/SWEDataRecord.R | 8 geometa-0.9/geometa/R/SWEElement.R | 10 geometa-0.9/geometa/R/SWENilValues.R | 8 geometa-0.9/geometa/R/SWEQuantity.R | 8 geometa-0.9/geometa/R/SWEQuantityRange.R | 8 geometa-0.9/geometa/R/SWEText.R | 8 geometa-0.9/geometa/R/SWETextEncoding.R | 8 geometa-0.9/geometa/R/SWETime.R | 8 geometa-0.9/geometa/R/SWETimeRange.R | 8 geometa-0.9/geometa/R/SWEXMLEncoding.R | 8 geometa-0.9/geometa/R/geometa_coverage.R | 41 geometa-0.9/geometa/R/geometa_logger.R | 4 geometa-0.9/geometa/R/geometa_mapping.R | 8 geometa-0.9/geometa/R/profile.R | 12 geometa-0.9/geometa/R/readISO.R |only geometa-0.9/geometa/README.md | 61 geometa-0.9/geometa/inst/extdata/codelists/gmxCodelists.xml | 13 geometa-0.9/geometa/inst/extdata/coverage/coverage.R | 33 geometa-0.9/geometa/inst/extdata/coverage/geometa_coverage_inventory.csv | 1286 ++++-- geometa-0.9/geometa/inst/extdata/coverage/geometa_coverage_summary.csv | 46 geometa-0.9/geometa/inst/extdata/coverage/geometa_coverage_summary.html |only geometa-0.9/geometa/inst/extdata/coverage/geometa_coverage_summary.md | 48 geometa-0.9/geometa/inst/extdata/examples/metadata.R | 2 geometa-0.9/geometa/inst/extdata/examples/metadata_19115-3.xml |only geometa-0.9/geometa/inst/extdata/examples/metadata_i18n.R | 2 geometa-0.9/geometa/inst/extdata/mappings/geometa_mapping.csv | 14 geometa-0.9/geometa/inst/extdata/schemas/19110 |only geometa-0.9/geometa/inst/extdata/schemas/19115 |only geometa-0.9/geometa/inst/extdata/schemas/19119 |only geometa-0.9/geometa/inst/extdata/schemas/19135 |only geometa-0.9/geometa/inst/extdata/schemas/19139 |only geometa-0.9/geometa/inst/extdata/schemas/19155 |only geometa-0.9/geometa/inst/extdata/schemas/19157 |only geometa-0.9/geometa/inst/extdata/schemas/19165 |only geometa-0.9/geometa/man/GMLAbstractCRS.Rd | 8 geometa-0.9/geometa/man/GMLAbstractCoordinateOperation.Rd | 8 geometa-0.9/geometa/man/GMLAbstractCoordinateSystem.Rd | 8 geometa-0.9/geometa/man/GMLAbstractCoverage.Rd | 8 geometa-0.9/geometa/man/GMLAbstractCurve.Rd | 6 geometa-0.9/geometa/man/GMLAbstractDiscreteCoverage.Rd | 8 geometa-0.9/geometa/man/GMLAbstractFeature.Rd | 8 geometa-0.9/geometa/man/GMLAbstractGML.Rd | 8 geometa-0.9/geometa/man/GMLAbstractGeneralConversion.Rd | 6 geometa-0.9/geometa/man/GMLAbstractGeneralDerivedCRS.Rd | 6 geometa-0.9/geometa/man/GMLAbstractGeneralOperationParameter.Rd | 6 geometa-0.9/geometa/man/GMLAbstractGeneralParameterValue.Rd | 8 geometa-0.9/geometa/man/GMLAbstractGeometricAggregate.Rd | 6 geometa-0.9/geometa/man/GMLAbstractGeometricPrimitive.Rd | 6 geometa-0.9/geometa/man/GMLAbstractGeometry.Rd | 8 geometa-0.9/geometa/man/GMLAbstractImplicitGeometry.Rd | 8 geometa-0.9/geometa/man/GMLAbstractObject.Rd | 8 geometa-0.9/geometa/man/GMLAbstractReferenceableGrid.Rd | 8 geometa-0.9/geometa/man/GMLAbstractRing.Rd | 6 geometa-0.9/geometa/man/GMLAbstractSingleCRS.Rd | 6 geometa-0.9/geometa/man/GMLAbstractSingleOperation.Rd | 6 geometa-0.9/geometa/man/GMLAbstractSurface.Rd | 6 geometa-0.9/geometa/man/GMLAbstractTimeGeometricPrimitive.Rd | 8 geometa-0.9/geometa/man/GMLAbstractTimeObject.Rd | 8 geometa-0.9/geometa/man/GMLAbstractTimePrimitive.Rd | 8 geometa-0.9/geometa/man/GMLAffineCS.Rd | 6 geometa-0.9/geometa/man/GMLBaseUnit.Rd | 8 geometa-0.9/geometa/man/GMLCOVAbstractCoverage.Rd | 8 geometa-0.9/geometa/man/GMLCOVExtension.Rd | 8 geometa-0.9/geometa/man/GMLCartesianCS.Rd | 6 geometa-0.9/geometa/man/GMLCodeType.Rd | 8 geometa-0.9/geometa/man/GMLCompoundCRS.Rd | 8 geometa-0.9/geometa/man/GMLConventionalUnit.Rd | 8 geometa-0.9/geometa/man/GMLConversion.Rd | 6 geometa-0.9/geometa/man/GMLCoordinateSystemAxis.Rd | 8 geometa-0.9/geometa/man/GMLCylindricalCS.Rd | 6 geometa-0.9/geometa/man/GMLDefinition.Rd | 8 geometa-0.9/geometa/man/GMLDerivedCRS.Rd | 6 geometa-0.9/geometa/man/GMLDerivedUnit.Rd | 8 geometa-0.9/geometa/man/GMLElement.Rd | 10 geometa-0.9/geometa/man/GMLEllipsoidalCS.Rd | 6 geometa-0.9/geometa/man/GMLEnvelope.Rd | 10 geometa-0.9/geometa/man/GMLEnvelopeWithTimePeriod.Rd | 10 geometa-0.9/geometa/man/GMLGeneralGridAxis.Rd | 10 geometa-0.9/geometa/man/GMLGeodeticCRS.Rd | 6 geometa-0.9/geometa/man/GMLGrid.Rd | 8 geometa-0.9/geometa/man/GMLGridCoverage.Rd | 8 geometa-0.9/geometa/man/GMLGridEnvelope.Rd | 6 geometa-0.9/geometa/man/GMLGridFunction.Rd | 8 geometa-0.9/geometa/man/GMLLineString.Rd | 8 geometa-0.9/geometa/man/GMLLinearCS.Rd | 6 geometa-0.9/geometa/man/GMLLinearRing.Rd | 8 geometa-0.9/geometa/man/GMLMultiCurve.Rd | 8 geometa-0.9/geometa/man/GMLMultiCurveCoverage.Rd | 8 geometa-0.9/geometa/man/GMLMultiPoint.Rd | 8 geometa-0.9/geometa/man/GMLMultiPointCoverage.Rd | 8 geometa-0.9/geometa/man/GMLMultiSolidCoverage.Rd | 8 geometa-0.9/geometa/man/GMLMultiSurface.Rd | 8 geometa-0.9/geometa/man/GMLMultiSurfaceCoverage.Rd | 8 geometa-0.9/geometa/man/GMLObliqueCartesianCS.Rd | 6 geometa-0.9/geometa/man/GMLOperationMethod.Rd | 6 geometa-0.9/geometa/man/GMLOperationParameter.Rd | 6 geometa-0.9/geometa/man/GMLOperationParameterGroup.Rd | 6 geometa-0.9/geometa/man/GMLParameterValue.Rd | 8 geometa-0.9/geometa/man/GMLParameterValueGroup.Rd | 8 geometa-0.9/geometa/man/GMLPoint.Rd | 8 geometa-0.9/geometa/man/GMLPolarCS.Rd | 6 geometa-0.9/geometa/man/GMLPolygon.Rd | 8 geometa-0.9/geometa/man/GMLProjectedCRS.Rd | 6 geometa-0.9/geometa/man/GMLRectifiedGrid.Rd | 8 geometa-0.9/geometa/man/GMLRectifiedGridCoverage.Rd | 8 geometa-0.9/geometa/man/GMLReferenceableGridByArray.Rd | 8 geometa-0.9/geometa/man/GMLReferenceableGridByTransformation.Rd | 8 geometa-0.9/geometa/man/GMLReferenceableGridByVectors.Rd | 8 geometa-0.9/geometa/man/GMLSphericalCS.Rd | 6 geometa-0.9/geometa/man/GMLTemporalCRS.Rd | 6 geometa-0.9/geometa/man/GMLTemporalCS.Rd | 6 geometa-0.9/geometa/man/GMLTimeCS.Rd | 6 geometa-0.9/geometa/man/GMLTimeInstant.Rd | 8 geometa-0.9/geometa/man/GMLTimePeriod.Rd | 8 geometa-0.9/geometa/man/GMLUnitDefinition.Rd | 8 geometa-0.9/geometa/man/GMLUserDefinedCS.Rd | 6 geometa-0.9/geometa/man/GMLVerticalCRS.Rd | 6 geometa-0.9/geometa/man/GMLVerticalCS.Rd | 6 geometa-0.9/geometa/man/INSPIREMetadataValidator.Rd | 10 geometa-0.9/geometa/man/ISOAbsoluteExternalPositionalAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOAbstractAcquisitionInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractAggregate.Rd | 8 geometa-0.9/geometa/man/ISOAbstractApplicationSchemaInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractCarrierOfCharacteristics.Rd | 8 geometa-0.9/geometa/man/ISOAbstractCatalogue.Rd | 14 geometa-0.9/geometa/man/ISOAbstractCitation.Rd |only geometa-0.9/geometa/man/ISOAbstractCompleteness.Rd | 17 geometa-0.9/geometa/man/ISOAbstractConstraints.Rd |only geometa-0.9/geometa/man/ISOAbstractContentInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractDataEvaluation.Rd |only geometa-0.9/geometa/man/ISOAbstractDataQuality.Rd |only geometa-0.9/geometa/man/ISOAbstractDistribution.Rd |only geometa-0.9/geometa/man/ISOAbstractExtent.Rd |only geometa-0.9/geometa/man/ISOAbstractFeatureCatalogue.Rd |only geometa-0.9/geometa/man/ISOAbstractFeatureType.Rd |only geometa-0.9/geometa/man/ISOAbstractFormat.Rd |only geometa-0.9/geometa/man/ISOAbstractGenericName.Rd | 8 geometa-0.9/geometa/man/ISOAbstractLineageInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractLogicalConsistency.Rd | 17 geometa-0.9/geometa/man/ISOAbstractMDContentInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractMaintenanceInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractMetadata.Rd |only geometa-0.9/geometa/man/ISOAbstractMetadataExtension.Rd |only geometa-0.9/geometa/man/ISOAbstractMetaquality.Rd |only geometa-0.9/geometa/man/ISOAbstractObject.Rd | 48 geometa-0.9/geometa/man/ISOAbstractOnlineResource.Rd |only geometa-0.9/geometa/man/ISOAbstractParameter.Rd |only geometa-0.9/geometa/man/ISOAbstractParty.Rd |only geometa-0.9/geometa/man/ISOAbstractPlatform.Rd |only geometa-0.9/geometa/man/ISOAbstractPortrayalCatalogueInformation.Rd |only geometa-0.9/geometa/man/ISOAbstractPositionalAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOAbstractPropertyType.Rd | 33 geometa-0.9/geometa/man/ISOAbstractQualityElement.Rd |only geometa-0.9/geometa/man/ISOAbstractRSReferenceSystem.Rd |only geometa-0.9/geometa/man/ISOAbstractReferenceSystem.Rd | 85 geometa-0.9/geometa/man/ISOAbstractResourceDescription.Rd |only geometa-0.9/geometa/man/ISOAbstractResponsibility.Rd |only geometa-0.9/geometa/man/ISOAbstractResult.Rd | 23 geometa-0.9/geometa/man/ISOAbstractSpatialRepresentation.Rd |only geometa-0.9/geometa/man/ISOAbstractSpatialResolution.Rd |only geometa-0.9/geometa/man/ISOAbstractStandardOrderProcess.Rd |only geometa-0.9/geometa/man/ISOAbstractTemporalAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOAbstractTemporalQuality.Rd |only geometa-0.9/geometa/man/ISOAbstractThematicAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOAbstractTypedDate.Rd |only geometa-0.9/geometa/man/ISOAccuracyOfATimeMeasurement.Rd | 17 geometa-0.9/geometa/man/ISOAddress.Rd | 104 geometa-0.9/geometa/man/ISOAggregateInformation.Rd | 8 geometa-0.9/geometa/man/ISOAggregationDerivation.Rd |only geometa-0.9/geometa/man/ISOAnchor.Rd | 12 geometa-0.9/geometa/man/ISOAngle.Rd | 12 geometa-0.9/geometa/man/ISOApplicationSchemaInformation.Rd | 16 geometa-0.9/geometa/man/ISOAssociatedResource.Rd |only geometa-0.9/geometa/man/ISOAssociation.Rd | 8 geometa-0.9/geometa/man/ISOAssociationRole.Rd | 9 geometa-0.9/geometa/man/ISOAssociationType.Rd | 12 geometa-0.9/geometa/man/ISOAttributeGroup.Rd |only geometa-0.9/geometa/man/ISOAttributes.Rd | 4 geometa-0.9/geometa/man/ISOBand.Rd | 15 geometa-0.9/geometa/man/ISOBaseBoolean.Rd | 12 geometa-0.9/geometa/man/ISOBaseCharacterString.Rd | 12 geometa-0.9/geometa/man/ISOBaseDate.Rd | 12 geometa-0.9/geometa/man/ISOBaseDateTime.Rd | 12 geometa-0.9/geometa/man/ISOBaseDecimal.Rd | 12 geometa-0.9/geometa/man/ISOBaseInteger.Rd | 12 geometa-0.9/geometa/man/ISOBaseReal.Rd | 12 geometa-0.9/geometa/man/ISOBinary.Rd | 12 geometa-0.9/geometa/man/ISOBinding.Rd | 6 geometa-0.9/geometa/man/ISOBoundAssociationRole.Rd | 6 geometa-0.9/geometa/man/ISOBoundFeatureAttribute.Rd | 6 geometa-0.9/geometa/man/ISOBoundingPolygon.Rd | 12 geometa-0.9/geometa/man/ISOBrowseGraphic.Rd | 12 geometa-0.9/geometa/man/ISOCTCodelistValue.Rd |only geometa-0.9/geometa/man/ISOCarrierOfCharacteristics.Rd | 8 geometa-0.9/geometa/man/ISOCellGeometry.Rd | 21 geometa-0.9/geometa/man/ISOCharacterSet.Rd | 12 geometa-0.9/geometa/man/ISOCitation.Rd | 185 geometa-0.9/geometa/man/ISOCitationSeries.Rd | 8 geometa-0.9/geometa/man/ISOClassification.Rd | 12 geometa-0.9/geometa/man/ISOCodeDefinition.Rd |only geometa-0.9/geometa/man/ISOCodeListDictionary.Rd |only geometa-0.9/geometa/man/ISOCodeListValue.Rd | 329 - geometa-0.9/geometa/man/ISOCodelist.Rd | 69 geometa-0.9/geometa/man/ISOCodelistCatalogue.Rd |only geometa-0.9/geometa/man/ISOCompletenessCommission.Rd | 17 geometa-0.9/geometa/man/ISOCompletenessOmission.Rd | 17 geometa-0.9/geometa/man/ISOConceptualConsistency.Rd | 17 geometa-0.9/geometa/man/ISOConfidence.Rd |only geometa-0.9/geometa/man/ISOConformanceResult.Rd | 52 geometa-0.9/geometa/man/ISOConstraint.Rd | 8 geometa-0.9/geometa/man/ISOConstraints.Rd | 184 geometa-0.9/geometa/man/ISOContact.Rd | 232 + geometa-0.9/geometa/man/ISOCountry.Rd | 12 geometa-0.9/geometa/man/ISOCoupledResource.Rd | 12 geometa-0.9/geometa/man/ISOCouplingType.Rd | 12 geometa-0.9/geometa/man/ISOCoverageContentType.Rd | 14 geometa-0.9/geometa/man/ISOCoverageDescription.Rd | 14 geometa-0.9/geometa/man/ISODCPList.Rd | 12 geometa-0.9/geometa/man/ISODataFile.Rd | 8 geometa-0.9/geometa/man/ISODataIdentification.Rd | 544 -- geometa-0.9/geometa/man/ISODataIdentification19115_3.Rd |only geometa-0.9/geometa/man/ISODataIdentification19139.Rd |only geometa-0.9/geometa/man/ISODataInspection.Rd |only geometa-0.9/geometa/man/ISODataQuality.Rd | 34 geometa-0.9/geometa/man/ISODataQualityAbstractElement.Rd | 138 geometa-0.9/geometa/man/ISODataQualityScope.Rd |only geometa-0.9/geometa/man/ISODataSet.Rd | 8 geometa-0.9/geometa/man/ISODatatype.Rd | 8 geometa-0.9/geometa/man/ISODate.Rd | 21 geometa-0.9/geometa/man/ISODateType.Rd | 12 geometa-0.9/geometa/man/ISODefinitionReference.Rd | 8 geometa-0.9/geometa/man/ISODefinitionSource.Rd | 8 geometa-0.9/geometa/man/ISODescriptiveResult.Rd |only geometa-0.9/geometa/man/ISODigitalTransferOptions.Rd | 56 geometa-0.9/geometa/man/ISODimension.Rd | 12 geometa-0.9/geometa/man/ISODimensionNameType.Rd | 12 geometa-0.9/geometa/man/ISODistance.Rd | 23 geometa-0.9/geometa/man/ISODistribution.Rd | 12 geometa-0.9/geometa/man/ISODistributionUnits.Rd | 8 geometa-0.9/geometa/man/ISODistributor.Rd | 100 geometa-0.9/geometa/man/ISODomainConsistency.Rd | 17 geometa-0.9/geometa/man/ISOElementSequence.Rd | 8 geometa-0.9/geometa/man/ISOEvaluationMethod.Rd |only geometa-0.9/geometa/man/ISOEvaluationMethodType.Rd | 12 geometa-0.9/geometa/man/ISOExtendedElementInformation.Rd | 8 geometa-0.9/geometa/man/ISOExtent.Rd | 12 geometa-0.9/geometa/man/ISOFeatureAssociation.Rd | 24 geometa-0.9/geometa/man/ISOFeatureAssociation19115_3.Rd |only geometa-0.9/geometa/man/ISOFeatureAssociation19139.Rd |only geometa-0.9/geometa/man/ISOFeatureAttribute.Rd | 12 geometa-0.9/geometa/man/ISOFeatureCatalogue.Rd | 10 geometa-0.9/geometa/man/ISOFeatureCatalogueDescription.Rd | 60 geometa-0.9/geometa/man/ISOFeatureOperation.Rd | 9 geometa-0.9/geometa/man/ISOFeatureType.Rd | 361 - geometa-0.9/geometa/man/ISOFeatureType19115_3.Rd |only geometa-0.9/geometa/man/ISOFeatureType19139.Rd |only geometa-0.9/geometa/man/ISOFeatureTypeInfo.Rd |only geometa-0.9/geometa/man/ISOFileName.Rd | 12 geometa-0.9/geometa/man/ISOFormat.Rd | 84 geometa-0.9/geometa/man/ISOFormatConsistency.Rd | 17 geometa-0.9/geometa/man/ISOFreeText.Rd | 12 geometa-0.9/geometa/man/ISOFullInspection.Rd |only geometa-0.9/geometa/man/ISOGeographicBoundingBox.Rd | 12 geometa-0.9/geometa/man/ISOGeographicDescription.Rd | 12 geometa-0.9/geometa/man/ISOGeographicExtent.Rd | 12 geometa-0.9/geometa/man/ISOGeometricObjectType.Rd | 12 geometa-0.9/geometa/man/ISOGeometricObjects.Rd | 12 geometa-0.9/geometa/man/ISOGeorectified.Rd | 14 geometa-0.9/geometa/man/ISOGeoreferenceable.Rd | 14 geometa-0.9/geometa/man/ISOGridSpatialRepresentation.Rd | 14 geometa-0.9/geometa/man/ISOGriddedDataPositionalAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOHomogeneity.Rd |only geometa-0.9/geometa/man/ISOIdentification.Rd | 569 -- geometa-0.9/geometa/man/ISOIdentification19115_3.Rd |only geometa-0.9/geometa/man/ISOIdentification19139.Rd |only geometa-0.9/geometa/man/ISOImageDescription.Rd | 14 geometa-0.9/geometa/man/ISOImageryAbstractGeolocationInformation.Rd | 12 geometa-0.9/geometa/man/ISOImageryAcquisitionInformation.Rd | 34 geometa-0.9/geometa/man/ISOImageryAlgorithm.Rd | 12 geometa-0.9/geometa/man/ISOImageryBand.Rd | 15 geometa-0.9/geometa/man/ISOImageryBandDefinition.Rd | 12 geometa-0.9/geometa/man/ISOImageryContext.Rd | 12 geometa-0.9/geometa/man/ISOImageryCoverageDescription.Rd | 14 geometa-0.9/geometa/man/ISOImageryCoverageResult.Rd | 55 geometa-0.9/geometa/man/ISOImageryEnvironmentalRecord.Rd | 52 geometa-0.9/geometa/man/ISOImageryEvent.Rd | 12 geometa-0.9/geometa/man/ISOImageryGCP.Rd | 12 geometa-0.9/geometa/man/ISOImageryGCPCollection.Rd | 41 geometa-0.9/geometa/man/ISOImageryGeometryType.Rd | 12 geometa-0.9/geometa/man/ISOImageryGeorectified.Rd | 14 geometa-0.9/geometa/man/ISOImageryGeoreferenceable.Rd | 14 geometa-0.9/geometa/man/ISOImageryImageDescription.Rd | 14 geometa-0.9/geometa/man/ISOImageryInstrument.Rd | 140 geometa-0.9/geometa/man/ISOImageryMetadata.Rd | 32 geometa-0.9/geometa/man/ISOImageryNominalResolution.Rd | 19 geometa-0.9/geometa/man/ISOImageryObjective.Rd | 12 geometa-0.9/geometa/man/ISOImageryObjectiveType.Rd | 12 geometa-0.9/geometa/man/ISOImageryOperation.Rd | 52 geometa-0.9/geometa/man/ISOImageryOperationType.Rd | 12 geometa-0.9/geometa/man/ISOImageryPlan.Rd | 12 geometa-0.9/geometa/man/ISOImageryPlatform.Rd | 96 geometa-0.9/geometa/man/ISOImageryPlatformPass.Rd | 12 geometa-0.9/geometa/man/ISOImageryPolarisationOrientation.Rd | 12 geometa-0.9/geometa/man/ISOImageryPriority.Rd | 12 geometa-0.9/geometa/man/ISOImageryProcessStep.Rd | 12 geometa-0.9/geometa/man/ISOImageryProcessStepReport.Rd | 12 geometa-0.9/geometa/man/ISOImageryProcessing.Rd | 12 geometa-0.9/geometa/man/ISOImageryRangeElementDescription.Rd | 12 geometa-0.9/geometa/man/ISOImageryRequestedDate.Rd | 12 geometa-0.9/geometa/man/ISOImageryRequirement.Rd | 12 geometa-0.9/geometa/man/ISOImageryRevision.Rd |only geometa-0.9/geometa/man/ISOImagerySensor.Rd |only geometa-0.9/geometa/man/ISOImagerySensorType.Rd | 23 geometa-0.9/geometa/man/ISOImagerySequence.Rd | 12 geometa-0.9/geometa/man/ISOImagerySource.Rd | 12 geometa-0.9/geometa/man/ISOImageryTransferFunctionType.Rd | 12 geometa-0.9/geometa/man/ISOImageryTrigger.Rd | 12 geometa-0.9/geometa/man/ISOImageryUsability.Rd | 15 geometa-0.9/geometa/man/ISOImagingCondition.Rd | 12 geometa-0.9/geometa/man/ISOIndirectEvaluation.Rd |only geometa-0.9/geometa/man/ISOIndividual.Rd |only geometa-0.9/geometa/man/ISOInheritanceRelation.Rd | 6 geometa-0.9/geometa/man/ISOInitiative.Rd | 8 geometa-0.9/geometa/man/ISOInitiativeType.Rd | 12 geometa-0.9/geometa/man/ISOInstrumentationEvent.Rd |only geometa-0.9/geometa/man/ISOInstrumentationEventList.Rd |only geometa-0.9/geometa/man/ISOInstrumentationEventType.Rd |only geometa-0.9/geometa/man/ISOKeywordClass.Rd |only geometa-0.9/geometa/man/ISOKeywordType.Rd | 12 geometa-0.9/geometa/man/ISOKeywords.Rd | 12 geometa-0.9/geometa/man/ISOLanguage.Rd | 12 geometa-0.9/geometa/man/ISOLegalConstraints.Rd | 20 geometa-0.9/geometa/man/ISOLength.Rd | 12 geometa-0.9/geometa/man/ISOLineage.Rd | 12 geometa-0.9/geometa/man/ISOListedValue.Rd | 8 geometa-0.9/geometa/man/ISOLocalName.Rd | 10 geometa-0.9/geometa/man/ISOLocale.Rd | 20 geometa-0.9/geometa/man/ISOLocaleContainer.Rd | 78 geometa-0.9/geometa/man/ISOLocalisedCharacterString.Rd | 12 geometa-0.9/geometa/man/ISOMDFeatureCatalogue.Rd |only geometa-0.9/geometa/man/ISOMLCodeDefinition.Rd |only geometa-0.9/geometa/man/ISOMLCodeListDictionary.Rd |only geometa-0.9/geometa/man/ISOMaintenanceFrequency.Rd | 12 geometa-0.9/geometa/man/ISOMaintenanceInformation.Rd | 12 geometa-0.9/geometa/man/ISOMeasure.Rd | 12 geometa-0.9/geometa/man/ISOMeasureReference.Rd |only geometa-0.9/geometa/man/ISOMedium.Rd | 12 geometa-0.9/geometa/man/ISOMediumFormat.Rd | 12 geometa-0.9/geometa/man/ISOMediumName.Rd | 8 geometa-0.9/geometa/man/ISOMemberName.Rd | 12 geometa-0.9/geometa/man/ISOMetaIdentifier.Rd | 125 geometa-0.9/geometa/man/ISOMetadata.Rd | 428 ++ geometa-0.9/geometa/man/ISOMetadataExtensionInformation.Rd | 8 geometa-0.9/geometa/man/ISOMetadataNamespace.Rd | 24 geometa-0.9/geometa/man/ISOMetadataScope.Rd |only geometa-0.9/geometa/man/ISOMimeFileType.Rd | 12 geometa-0.9/geometa/man/ISOMultiplicity.Rd | 12 geometa-0.9/geometa/man/ISOMultiplicityRange.Rd | 12 geometa-0.9/geometa/man/ISONonQuantitativeAttributeAccuracy.Rd | 17 geometa-0.9/geometa/man/ISONonQuantitativeAttributeCorrectness.Rd |only geometa-0.9/geometa/man/ISOObligation.Rd | 8 geometa-0.9/geometa/man/ISOOnLineFunction.Rd | 12 geometa-0.9/geometa/man/ISOOnlineResource.Rd | 18 geometa-0.9/geometa/man/ISOOperationChainMetadata.Rd |only geometa-0.9/geometa/man/ISOOperationMetadata.Rd | 18 geometa-0.9/geometa/man/ISOOrganisation.Rd |only geometa-0.9/geometa/man/ISOOtherAggregate.Rd | 8 geometa-0.9/geometa/man/ISOParameterDirection.Rd | 10 geometa-0.9/geometa/man/ISOPeriodDuration.Rd |only geometa-0.9/geometa/man/ISOPixelOrientation.Rd | 12 geometa-0.9/geometa/man/ISOPlatform.Rd | 11 geometa-0.9/geometa/man/ISOPortrayalCatalogueReference.Rd | 12 geometa-0.9/geometa/man/ISOPresentationForm.Rd | 12 geometa-0.9/geometa/man/ISOProcessParameter.Rd |only geometa-0.9/geometa/man/ISOProcessStep.Rd | 12 geometa-0.9/geometa/man/ISOProductionSeries.Rd | 11 geometa-0.9/geometa/man/ISOProgress.Rd |only geometa-0.9/geometa/man/ISOPropertyType.Rd | 9 geometa-0.9/geometa/man/ISOQualityResultFile.Rd |only geometa-0.9/geometa/man/ISOQuantitativeAttributeAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOQuantitativeResult.Rd | 54 geometa-0.9/geometa/man/ISORangeDimension.Rd | 58 geometa-0.9/geometa/man/ISORecord.Rd | 8 geometa-0.9/geometa/man/ISORecordType.Rd | 12 geometa-0.9/geometa/man/ISOReferenceIdentifier.Rd | 53 geometa-0.9/geometa/man/ISOReferenceSystem.Rd | 44 geometa-0.9/geometa/man/ISOReferenceSystemType.Rd |only geometa-0.9/geometa/man/ISORelativeInternalPositionalAccuracy.Rd | 17 geometa-0.9/geometa/man/ISOReleasability.Rd |only geometa-0.9/geometa/man/ISORepresentativeFraction.Rd | 12 geometa-0.9/geometa/man/ISORepresentativity.Rd |only geometa-0.9/geometa/man/ISOResolution.Rd | 12 geometa-0.9/geometa/man/ISOResponsibility.Rd |only geometa-0.9/geometa/man/ISOResponsibleParty.Rd | 8 geometa-0.9/geometa/man/ISORestriction.Rd | 12 geometa-0.9/geometa/man/ISORole.Rd | 12 geometa-0.9/geometa/man/ISORoleType.Rd | 8 geometa-0.9/geometa/man/ISOSRVParameter.Rd |only geometa-0.9/geometa/man/ISOSRVParameterDirection.Rd |only geometa-0.9/geometa/man/ISOSRVServiceIdentification.Rd | 42 geometa-0.9/geometa/man/ISOSRVServiceIdentification19115_3.Rd |only geometa-0.9/geometa/man/ISOSRVServiceIdentification19139.Rd |only geometa-0.9/geometa/man/ISOSampleBasedInspection.Rd |only geometa-0.9/geometa/man/ISOSampleDimension.Rd |only geometa-0.9/geometa/man/ISOScale.Rd | 12 geometa-0.9/geometa/man/ISOScope.Rd | 112 geometa-0.9/geometa/man/ISOScopeCode.Rd |only geometa-0.9/geometa/man/ISOScopeDescription.Rd | 12 geometa-0.9/geometa/man/ISOScopedName.Rd | 12 geometa-0.9/geometa/man/ISOSecurityConstraints.Rd | 20 geometa-0.9/geometa/man/ISOSensor.Rd | 11 geometa-0.9/geometa/man/ISOSeries.Rd | 83 geometa-0.9/geometa/man/ISOServiceIdentification.Rd | 33 geometa-0.9/geometa/man/ISOServiceIdentification19115_3.Rd |only geometa-0.9/geometa/man/ISOServiceIdentification19139.Rd |only geometa-0.9/geometa/man/ISOSource.Rd | 12 geometa-0.9/geometa/man/ISOSpatialRepresentation.Rd | 14 geometa-0.9/geometa/man/ISOSpatialRepresentationType.Rd | 14 geometa-0.9/geometa/man/ISOSpatialTemporalExtent.Rd | 12 geometa-0.9/geometa/man/ISOStandaloneQualityReportInformation.Rd |only geometa-0.9/geometa/man/ISOStandardOrderProcess.Rd | 52 geometa-0.9/geometa/man/ISOStatus.Rd | 19 geometa-0.9/geometa/man/ISOStereoMate.Rd | 8 geometa-0.9/geometa/man/ISOTelephone.Rd | 55 geometa-0.9/geometa/man/ISOTelephoneType.Rd |only geometa-0.9/geometa/man/ISOTemporalConsistency.Rd | 17 geometa-0.9/geometa/man/ISOTemporalExtent.Rd | 12 geometa-0.9/geometa/man/ISOTemporalValidity.Rd | 17 geometa-0.9/geometa/man/ISOThematicClassificationCorrectness.Rd | 17 geometa-0.9/geometa/man/ISOTopicCategory.Rd | 12 geometa-0.9/geometa/man/ISOTopologicalConsistency.Rd | 17 geometa-0.9/geometa/man/ISOTopologyLevel.Rd | 12 geometa-0.9/geometa/man/ISOTypeName.Rd | 12 geometa-0.9/geometa/man/ISOURI.Rd |only geometa-0.9/geometa/man/ISOURL.Rd | 8 geometa-0.9/geometa/man/ISOUnlimitedInteger.Rd | 12 geometa-0.9/geometa/man/ISOUomIdentifier.Rd |only geometa-0.9/geometa/man/ISOUsabilityElement.Rd |only geometa-0.9/geometa/man/ISOUsage.Rd | 18 geometa-0.9/geometa/man/ISOVectorSpatialRepresentation.Rd | 14 geometa-0.9/geometa/man/ISOVerticalExtent.Rd | 12 geometa-0.9/geometa/man/SWEAbstractDataComponent.Rd | 8 geometa-0.9/geometa/man/SWEAbstractEncoding.Rd | 8 geometa-0.9/geometa/man/SWEAbstractObject.Rd | 8 geometa-0.9/geometa/man/SWEAbstractSWE.Rd | 8 geometa-0.9/geometa/man/SWEAbstractSWEIdentifiable.Rd | 8 geometa-0.9/geometa/man/SWEAbstractSimpleComponent.Rd | 8 geometa-0.9/geometa/man/SWECategory.Rd | 8 geometa-0.9/geometa/man/SWECategoryRange.Rd | 8 geometa-0.9/geometa/man/SWECount.Rd | 8 geometa-0.9/geometa/man/SWECountRange.Rd | 8 geometa-0.9/geometa/man/SWEDataRecord.Rd | 8 geometa-0.9/geometa/man/SWEElement.Rd | 10 geometa-0.9/geometa/man/SWENilValues.Rd | 8 geometa-0.9/geometa/man/SWEQuantity.Rd | 8 geometa-0.9/geometa/man/SWEQuantityRange.Rd | 8 geometa-0.9/geometa/man/SWEText.Rd | 8 geometa-0.9/geometa/man/SWETextEncoding.Rd | 8 geometa-0.9/geometa/man/SWETime.Rd | 8 geometa-0.9/geometa/man/SWETimeRange.Rd | 8 geometa-0.9/geometa/man/SWEXMLEncoding.Rd | 8 geometa-0.9/geometa/man/geometa.Rd | 7 geometa-0.9/geometa/man/geometaLogger.Rd | 4 geometa-0.9/geometa/man/geometa_coverage.Rd | 7 geometa-0.9/geometa/man/getISOClasses.Rd | 4 geometa-0.9/geometa/man/getISOCodelists.Rd | 6 geometa-0.9/geometa/man/getISOMetadataSchemaFile.Rd |only geometa-0.9/geometa/man/getISOMetadataSchemas.Rd | 10 geometa-0.9/geometa/man/getMetadataStandard.Rd |only geometa-0.9/geometa/man/pivot_converter.Rd | 4 geometa-0.9/geometa/man/pivot_format.Rd | 4 geometa-0.9/geometa/man/readISO.Rd |only geometa-0.9/geometa/man/readISO19139.Rd | 2 geometa-0.9/geometa/man/registerISOCodelist.Rd | 5 geometa-0.9/geometa/man/registerISOMetadataSchema.Rd | 9 geometa-0.9/geometa/man/setISOCodelists.Rd | 16 geometa-0.9/geometa/man/setISOMetadataNamespaces.Rd | 33 geometa-0.9/geometa/man/setISOMetadataSchemas.Rd | 12 geometa-0.9/geometa/man/setMetadataStandard.Rd |only geometa-0.9/geometa/tests/testthat/test_INSPIREMetadataValidator.R | 22 geometa-0.9/geometa/tests/testthat/test_ISOBaseBoolean.R | 21 geometa-0.9/geometa/tests/testthat/test_ISOBaseCharacterString.R | 18 geometa-0.9/geometa/tests/testthat/test_ISOBoundingPolygon.R | 25 geometa-0.9/geometa/tests/testthat/test_ISOCitationSeries.R | 64 geometa-0.9/geometa/tests/testthat/test_ISOCodelistCatalogue.R |only geometa-0.9/geometa/tests/testthat/test_ISOContact.R | 36 geometa-0.9/geometa/tests/testthat/test_ISODataQuality.R | 4 geometa-0.9/geometa/tests/testthat/test_ISOExtent.R | 37 geometa-0.9/geometa/tests/testthat/test_ISOFeatureAssociation.R | 2 geometa-0.9/geometa/tests/testthat/test_ISOFeatureCatalogue.R | 88 geometa-0.9/geometa/tests/testthat/test_ISOGeographicBoundingBox.R | 18 geometa-0.9/geometa/tests/testthat/test_ISOGeographicDescription.R | 20 geometa-0.9/geometa/tests/testthat/test_ISOGeorectified.R | 4 geometa-0.9/geometa/tests/testthat/test_ISOImageryMetadata.R | 6 geometa-0.9/geometa/tests/testthat/test_ISOImageryPlan.R | 2 geometa-0.9/geometa/tests/testthat/test_ISOMetadata.R | 377 + geometa-0.9/geometa/tests/testthat/test_ISOOperationMetadata.R | 4 geometa-0.9/geometa/tests/testthat/test_ISOSRVParameter.R |only geometa-0.9/geometa/tests/testthat/test_ISOServiceIdentification.R | 16 geometa-0.9/geometa/tests/testthat/test_ISOSpatialTemporalExtent.R | 26 geometa-0.9/geometa/tests/testthat/test_ISOTemporalExtent.R | 46 geometa-0.9/geometa/tests/testthat/test_ISOVerticalExtent.R | 21 geometa-0.9/geometa/tests/testthat/test_geometa_mapping.R | 2 908 files changed, 13982 insertions(+), 7699 deletions(-)
Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between basefun versions 1.2-1 dated 2025-01-17 and 1.2-2 dated 2025-01-29
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- inst/NEWS.Rd | 7 +++++++ man/Bernstein_basis.Rd | 6 +++--- tests/bases-Ex.R | 18 +++++++++--------- 5 files changed, 28 insertions(+), 21 deletions(-)
Title: A Template for Creating Reproducible 'shiny' Applications
Description: Create a skeleton 'shiny' application with create_template() that is
reproducible, can be saved and meets academic standards for attribution.
Forked from 'wallace'. Code is split into modules that are loaded and linked
together automatically and each call one function. Guidance pages explain
modules to users and flexible logging informs them of any errors. Options
enable asynchronous operations, viewing of source code, interactive maps and
data tables. Use to create complex analytical applications, following best
practices in open science and software development. Includes functions for
automating repetitive development tasks and an example application at
run_shinyscholar() that requires
install.packages("shinyscholar", dependencies = TRUE). A guide to developing
applications can be found on the package website.
Author: Simon E. H. Smart [aut, cre, cph],
Tim Lucas [aut] ,
Jamie M. Kass [ctb],
Gonzalo E. Pinilla-Buitrago [ctb],
Andrea Paz [ctb],
Bethany A. Johnson [ctb],
Valentina Grisales-Betancur [ctb],
Dean Attali [ctb],
Matthew E. Aiello-Lammens [ctb],
Cory Merow [...truncated...]
Maintainer: Simon E. H. Smart <simon.smart@cantab.net>
Diff between shinyscholar versions 0.2.3 dated 2025-01-17 and 0.2.4 dated 2025-01-29
DESCRIPTION | 8 - MD5 | 46 ++++----- NEWS.md | 12 +- R/create_template.R | 96 +++++++++++++------ R/custom_modules.R | 6 + R/helper_functions.R | 44 +-------- R/select_async_f.R | 10 +- R/select_query_f.R | 10 +- README.md | 2 inst/app_skeleton/DESCRIPTION | 11 +- inst/app_skeleton/global.Rmd | 4 inst/app_skeleton/helper_functions.R | 40 +------- inst/app_skeleton/server.Rmd | 12 +- inst/module_skeleton/skeleton_async.R | 6 - inst/shiny/Rmd/text_intro_tab.Rmd | 2 inst/shiny/Rmd/userReport_intro.Rmd | 2 inst/shiny/modules/plot_hist.R | 2 inst/shiny/modules/select_async.R | 14 +- inst/shiny/modules/select_query.R | 11 +- inst/shiny/server.R | 10 +- man/printVecAsis.Rd | 10 -- tests/testthat/test-create_template.R | 164 +++++++++++++++++++++++----------- tests/testthat/test-helpers.R | 12 ++ tests/testthat/test-metadata.R | 147 +++++++++++++++--------------- 24 files changed, 379 insertions(+), 302 deletions(-)
Title: 'Rcpp' Integration of the 'Streamulus' 'DSEL' for Stream
Processing
Description: The 'Streamulus' (template, header-only) library by
Irit Katriel (at <https://github.com/iritkatriel/streamulus>)
provides a very powerful yet convenient framework for stream
processing. This package connects 'Streamulus' to R by providing
both the header files and all examples.
Author: Dirk Eddelbuettel [aut, cre] ,
Irit Katriel [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppStreams versions 0.1.3 dated 2019-02-25 and 0.1.4 dated 2025-01-29
ChangeLog | 50 ++++++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 16 ++++++++++------ MD5 | 10 +++++----- README.md | 9 +++++++-- inst/NEWS.Rd | 8 ++++++++ src/Makevars | 3 --- 6 files changed, 80 insertions(+), 16 deletions(-)
Title: Pathways Longitudinal and Differential Analysis in Metabolomics
Description: Perform a differential analysis at pathway level based on metabolite quantifications and information on pathway metabolite composition.
The method is based on a Principal Component Analysis step and on a linear mixed model.
Automatic query of metabolic pathways is also implemented.
Author: Camille Guilmineau [aut, cre],
Remi Servien [aut] ,
Nathalie Vialaneix [aut]
Maintainer: Camille Guilmineau <camille.guilmineau@inrae.fr>
Diff between phoenics versions 0.4 dated 2024-12-12 and 0.5 dated 2025-01-29
DESCRIPTION | 12 MD5 | 43 +- NAMESPACE | 80 ++-- NEWS.md | 55 +- R/data.R | 126 +++--- R/from_ASICS_to_PHOENICS.R | 128 +++--- R/overlap_coefficient.R | 262 +++++++------- R/pathwayRes-class.R | 507 +++++++++++++-------------- R/pathway_search.R | 212 +++++------ R/test_pathway.R | 648 +++++++++++++++++------------------ R/use_KEGGREST.R | 22 - build/partial.rdb |binary build/vignette.rds |only inst/CITATION | 54 +- inst/adddata/ASICS_library_codes.txt | 438 +++++++++++------------ inst/doc |only man/MTBLS422.Rd | 2 man/from_ASICS_to_PHOENICS.Rd | 88 ++-- man/overlap_coefficient.Rd | 138 +++---- man/pathwayRes.Rd | 190 +++++----- man/pathway_search.Rd | 102 ++--- man/test_pathway.Rd | 238 ++++++------ vignettes |only 23 files changed, 1674 insertions(+), 1671 deletions(-)
Title: Read and Write 'Parquet' Files
Description: Self-sufficient reader and writer for flat 'Parquet' files.
Can read most 'Parquet' data types. Can write many 'R' data types,
including factors and temporal types. See docs for limitations.
Author: Gabor Csardi [aut, cre],
Hannes Muehleisen [aut, cph] ,
Google Inc. [cph],
Apache Software Foundation [cph],
Posit Software, PBC [cph],
RAD Game Tools [cph],
Valve Software [cph],
Tenacious Software LLC [cph],
Facebook, Inc. [cph]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between nanoparquet versions 0.3.1 dated 2024-07-01 and 0.4.0 dated 2025-01-29
nanoparquet-0.3.1/nanoparquet/R/nanoparquet.R |only nanoparquet-0.3.1/nanoparquet/man/parquet_info.Rd |only nanoparquet-0.3.1/nanoparquet/man/parquet_metadata.Rd |only nanoparquet-0.3.1/nanoparquet/man/parquet_pages.Rd |only nanoparquet-0.3.1/nanoparquet/src/lib/ParquetFile.cpp |only nanoparquet-0.3.1/nanoparquet/src/lib/ParquetFile.h |only nanoparquet-0.3.1/nanoparquet/src/read.cpp |only nanoparquet-0.3.1/nanoparquet/src/write.cpp |only nanoparquet-0.4.0/nanoparquet/DESCRIPTION | 16 nanoparquet-0.4.0/nanoparquet/MD5 | 183 +- nanoparquet-0.4.0/nanoparquet/NAMESPACE | 5 nanoparquet-0.4.0/nanoparquet/NEWS.md | 84 + nanoparquet-0.4.0/nanoparquet/R/arrow-schema.R | 64 nanoparquet-0.4.0/nanoparquet/R/infer-parquet-schema.R |only nanoparquet-0.4.0/nanoparquet/R/nanoparquet-package.R | 12 nanoparquet-0.4.0/nanoparquet/R/options.R | 70 nanoparquet-0.4.0/nanoparquet/R/parquet-column-types.R |only nanoparquet-0.4.0/nanoparquet/R/parquet-metadata.R |only nanoparquet-0.4.0/nanoparquet/R/porcelain.R | 31 nanoparquet-0.4.0/nanoparquet/R/print.R | 2 nanoparquet-0.4.0/nanoparquet/R/read-parquet.R |only nanoparquet-0.4.0/nanoparquet/R/schema.R |only nanoparquet-0.4.0/nanoparquet/R/utils.R | 67 nanoparquet-0.4.0/nanoparquet/R/write-parquet.R |only nanoparquet-0.4.0/nanoparquet/README.md | 45 nanoparquet-0.4.0/nanoparquet/inst/WORDLIST | 16 nanoparquet-0.4.0/nanoparquet/man/append_parquet.Rd |only nanoparquet-0.4.0/nanoparquet/man/infer_parquet_schema.Rd |only nanoparquet-0.4.0/nanoparquet/man/nanoparquet-package.Rd | 46 nanoparquet-0.4.0/nanoparquet/man/nanoparquet-types.Rd | 115 + nanoparquet-0.4.0/nanoparquet/man/parquet-encodings.Rd |only nanoparquet-0.4.0/nanoparquet/man/parquet_column_types.Rd | 13 nanoparquet-0.4.0/nanoparquet/man/parquet_options.Rd | 45 nanoparquet-0.4.0/nanoparquet/man/parquet_schema.Rd | 128 + nanoparquet-0.4.0/nanoparquet/man/read_parquet.Rd | 22 nanoparquet-0.4.0/nanoparquet/man/read_parquet_info.Rd |only nanoparquet-0.4.0/nanoparquet/man/read_parquet_metadata.Rd |only nanoparquet-0.4.0/nanoparquet/man/read_parquet_page.Rd | 8 nanoparquet-0.4.0/nanoparquet/man/read_parquet_pages.Rd |only nanoparquet-0.4.0/nanoparquet/man/read_parquet_schema.Rd |only nanoparquet-0.4.0/nanoparquet/man/write_parquet.Rd | 46 nanoparquet-0.4.0/nanoparquet/src/Makevars | 16 nanoparquet-0.4.0/nanoparquet/src/RParquetAppender.cpp |only nanoparquet-0.4.0/nanoparquet/src/RParquetAppender.h |only nanoparquet-0.4.0/nanoparquet/src/RParquetOutFile.cpp |only nanoparquet-0.4.0/nanoparquet/src/RParquetOutFile.h |only nanoparquet-0.4.0/nanoparquet/src/RParquetReader.cpp |only nanoparquet-0.4.0/nanoparquet/src/RParquetReader.h |only nanoparquet-0.4.0/nanoparquet/src/arrow-schema.cpp | 13 nanoparquet-0.4.0/nanoparquet/src/broken.cpp |only nanoparquet-0.4.0/nanoparquet/src/cpp-utils.cpp |only nanoparquet-0.4.0/nanoparquet/src/dictionary-encoding.cpp | 152 +- nanoparquet-0.4.0/nanoparquet/src/encodings.cpp | 22 nanoparquet-0.4.0/nanoparquet/src/lib/ParquetOutFile.cpp | 723 ++++++---- nanoparquet-0.4.0/nanoparquet/src/lib/ParquetOutFile.h | 164 +- nanoparquet-0.4.0/nanoparquet/src/lib/ParquetReader.cpp |only nanoparquet-0.4.0/nanoparquet/src/lib/ParquetReader.h |only nanoparquet-0.4.0/nanoparquet/src/lib/RleBpDecoder.h | 35 nanoparquet-0.4.0/nanoparquet/src/lib/RleBpEncoder.h | 31 nanoparquet-0.4.0/nanoparquet/src/lib/bitpacker.h | 6 nanoparquet-0.4.0/nanoparquet/src/lib/bytebuffer.h | 37 nanoparquet-0.4.0/nanoparquet/src/lib/memstream.h | 18 nanoparquet-0.4.0/nanoparquet/src/lib/nanoparquet.h | 1 nanoparquet-0.4.0/nanoparquet/src/miniz/miniz_wrapper.hpp | 4 nanoparquet-0.4.0/nanoparquet/src/protect.cpp | 29 nanoparquet-0.4.0/nanoparquet/src/protect.h | 58 nanoparquet-0.4.0/nanoparquet/src/r-nanoparquet.h |only nanoparquet-0.4.0/nanoparquet/src/r-utils.cpp |only nanoparquet-0.4.0/nanoparquet/src/read-metadata.cpp | 92 - 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Title: Optimization Frameworks for Tie-Oriented and Actor-Oriented
Relational Event Models
Description: A comprehensive set of tools designed for optimizing likelihood within a tie-oriented (Butts, C., 2008, <doi:10.1111/j.1467-9531.2008.00203.x>) or an actor-oriented modelling framework (Stadtfeld, C., & Block, P., 2017, <doi:10.15195/v4.a14>) in relational event networks. The package accommodates both frequentist and Bayesian approaches. The frequentist approaches that the package incorporates are the Maximum Likelihood Optimization (MLE) and the Gradient-based Optimization (GDADAMAX). The Bayesian methodologies included in the package are the Bayesian Sampling Importance Resampling (BSIR) and the Hamiltonian Monte Carlo (HMC). The flexibility of choosing between frequentist and Bayesian optimization approaches allows researchers to select the estimation approach which aligns the most with their analytical preferences.
Author: Giuseppe Arena [aut, cre] ,
Rumana Lakdawala [aut],
Fabio Generoso Vieira [aut],
Marlyne Meijerink-Bosman [ctb],
Diana Karimova [ctb],
Mahdi Shafiee Kamalabad [ctb],
Roger Leenders [ctb],
Joris Mulder [ctb]
Maintainer: Giuseppe Arena <g.arena@uva.nl>
Diff between remstimate versions 2.3.11 dated 2024-05-16 and 2.3.13 dated 2025-01-29
DESCRIPTION | 26 +++++++++++--------------- LICENSE | 2 +- MD5 | 14 +++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/remstimate.html | 46 +++++++++++++++++++++++----------------------- man/remstimate-package.Rd | 11 +++++------ src/remstimate.cpp | 10 +++++++--- 8 files changed, 54 insertions(+), 55 deletions(-)
Title: Computes Statistics for Relational Event History Data
Description: Computes a variety of statistics for relational event models. Relational event models enable researchers to investigate both exogenous and endogenous factors influencing the evolution of a time-ordered sequence of events. These models are categorized into tie-oriented models (Butts, C., 2008, <doi:10.1111/j.1467-9531.2008.00203.x>), where the probability of a dyad interacting next is modeled in a single step, and actor-oriented models (Stadtfeld, C., & Block, P., 2017, <doi:10.15195/v4.a14>), which first model the probability of a sender initiating an interaction and subsequently the probability of the sender's choice of receiver. The package is designed to compute a variety of statistics that summarize exogenous and endogenous influences on the event stream for both types of models.
Author: Giuseppe Arena [aut, cre] ,
Marlyne Meijerink-Bosman [aut],
Diana Karimova [ctb],
Rumana Lakdawala [ctb],
Mahdi Shafiee Kamalabad [ctb],
Fabio Generoso Vieira [ctb],
Roger Leenders [ctb],
Joris Mulder [ctb]
Maintainer: Giuseppe Arena <g.arena@uva.nl>
Diff between remstats versions 3.2.2 dated 2024-05-15 and 3.2.4 dated 2025-01-29
DESCRIPTION | 26 +++++++++++--------------- LICENSE | 2 +- MD5 | 10 +++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/remstats.html | 5 +++-- 6 files changed, 20 insertions(+), 23 deletions(-)
Title: Processing and Transforming Relational Event History Data
Description: Efficiently processes relational event history data and transforms them into formats suitable for other packages. The primary objective of this package is to convert event history data into a format that integrates with the packages in 'remverse' and is compatible with various analytical tools (e.g., computing network statistics, estimating tie-oriented or actor-oriented social network models). Second, it can also transform the data into formats compatible with other packages out of 'remverse'. The package processes the data for two types of temporal social network models: tie-oriented modeling framework (Butts, C., 2008, <doi:10.1111/j.1467-9531.2008.00203.x>) and actor-oriented modeling framework (Stadtfeld, C., & Block, P., 2017, <doi:10.15195/v4.a14>).
Author: Giuseppe Arena [aut, cre] ,
Rumana Lakdawala [ctb],
Marlyne Meijerink-Bosman [ctb],
Diana Karimova [ctb],
Fabio Generoso Vieira [ctb],
Mahdi Shafiee Kamalabad [ctb],
Roger Leenders [ctb],
Joris Mulder [ctb]
Maintainer: Giuseppe Arena <g.arena@uva.nl>
Diff between remify versions 3.2.6 dated 2024-05-15 and 3.2.8 dated 2025-01-29
DESCRIPTION | 28 ++++++++++++---------------- LICENSE | 2 +- MD5 | 17 +++++++++-------- NEWS.md |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/rehshape.html | 5 +++-- inst/doc/remify.html | 7 ++++--- inst/doc/riskset.html | 5 +++-- man/remify-package.Rd | 13 ++++++------- 10 files changed, 38 insertions(+), 39 deletions(-)
Title: An Introduction to Applied Multivariate Analysis with R
Description: Functions, data sets, analyses and examples from the book
`An Introduction to Applied Multivariate Analysis with R'
(Brian S. Everitt and Torsten Hothorn, Springer, 2011).
Author: Brian S. Everitt [aut],
Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between MVA versions 1.0-8 dated 2022-03-18 and 1.0-9 dated 2025-01-29
DESCRIPTION | 23 ++++++++++++++++------- MD5 | 6 +++--- build/vignette.rds |binary inst/doc/Ch-Errata.pdf |binary 4 files changed, 19 insertions(+), 10 deletions(-)
Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for analyses of multiple social networks are delivered with this
package as described in Ostoic (2020) <DOI:10.18637/jss.v092.i11>. 'multiplex' makes
possible, among other things, to create and manipulate multiplex, multimode, and
multilevel network data with different formats. Effective ways are available to treat
multiple networks with routines that combine algebraic systems like the partially ordered
semigroup with decomposition procedures or semiring structures with the relational
bundles occurring in different types of multivariate networks. 'multiplex' provides also
an algebraic approach for affiliation networks through Galois derivations between families
of the pairs of subsets in the two domains of the network with visualization options.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 3.8-3 dated 2024-11-06 and 3.9 dated 2025-01-29
DESCRIPTION | 8 ++-- MD5 | 28 +++++++-------- R/as.semigroup.R | 39 +++++++++++++------- R/cngr.R | 4 +- R/decomp.R | 35 +++++++++--------- R/fact.R | 8 ++-- R/green.rel.R | 36 +++++++++---------- R/reducs.R | 8 ++-- R/rel.sys.R | 80 ++++++++++++++++++++++++++++--------------- R/sprt.R | 22 +++++------ R/transf.R | 21 ++++++++--- inst/CHANGELOG | 8 ++++ inst/doc/TwoModeNetworks.pdf |binary man/green.rel.Rd | 4 +- man/multiplex-package.Rd | 4 +- 15 files changed, 179 insertions(+), 126 deletions(-)
Title: Credible Visualization for Two-Dimensional Projections of Data
Description: Projections are common dimensionality reduction methods, which represent high-dimensional data in a two-dimensional space. However, when restricting the output space to two dimensions, which results in a two dimensional scatter plot (projection) of the data, low dimensional similarities do not represent high dimensional distances coercively [Thrun, 2018] <DOI: 10.1007/978-3-658-20540-9>. This could lead to a misleading interpretation of the underlying structures [Thrun, 2018]. By means of the 3D topographic map the generalized Umatrix is able to depict errors of these two-dimensional scatter plots. The package is derived from the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9> and the main algorithm called simplified self-organizing map for dimensionality reduction methods is published in <DOI: 10.1016/j.mex.2020.101093>.
Author: Michael Thrun [aut, cre, cph] ,
Felix Pape [ctb, ctr],
Tim Schreier [ctb, ctr],
Luis Winckelman [ctb, ctr],
Quirin Stier [ctb, ctr] ,
Alfred Ultsch [ths]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between GeneralizedUmatrix versions 1.2.6 dated 2023-05-30 and 1.3.1 dated 2025-01-29
DESCRIPTION | 12 - MD5 | 49 ++--- NAMESPACE | 1 R/GeneralizedUmatrix.R | 30 +-- R/GeneratePmatrix.R | 196 +++++++++++----------- R/NormalizeUmatrix.R | 75 -------- R/RcppExports.R | 8 R/TopviewTopographicMap.R | 67 +++++-- R/sESOM4BMUs.R | 35 ++-- README.md | 70 +++++++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 inst/doc/GeneralizedUmatrix.R | 8 inst/doc/GeneralizedUmatrix.Rmd | 2 inst/doc/GeneralizedUmatrix.html | 200 +++++++++++++---------- man/GeneralizedUmatrix.Rd | 6 man/TopviewTopographicMap.Rd | 16 + man/trainstepC.Rd | 3 man/trainstepC2.Rd |only src/Makevars | 10 - src/Makevars.win | 12 - src/RcppExports.cpp | 18 +- src/trainstepC.cpp | 133 ++++++++------- src/trainstepC2.cpp | 339 +++++++++++---------------------------- vignettes/GeneralizedUmatrix.Rmd | 2 26 files changed, 614 insertions(+), 680 deletions(-)
More information about GeneralizedUmatrix at CRAN
Permanent link
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <d [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Kurt Hornik [aut] ,
Carolin Strobl [aut] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.3-17 dated 2024-08-17 and 1.3-18 dated 2025-01-29
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/NEWS | 4 ++++ inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary 7 files changed, 15 insertions(+), 11 deletions(-)
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Author: Jari Oksanen [aut, cre],
Gavin L. Simpson [aut],
F. Guillaume Blanchet [aut],
Roeland Kindt [aut],
Pierre Legendre [aut],
Peter R. Minchin [aut],
R.B. O'Hara [aut],
Peter Solymos [aut],
M. Henry H. Stevens [aut],
Eduard Szoecs [aut],
Helene Wagner [a [...truncated...]
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between vegan versions 2.6-8 dated 2024-08-28 and 2.6-10 dated 2025-01-29
DESCRIPTION | 12 ++++--- MD5 | 62 +++++++++++++++++++-------------------- R/anova.ccabyterm.R | 13 +++++--- R/designdist.R | 8 ++--- R/envfit.default.R | 9 +++++ R/goodness.cca.R | 2 + R/linestack.R | 9 +++-- R/metaMDSiter.R | 8 ++--- R/oecosimu.R | 7 +++- R/ordibar.R | 13 +++----- R/ordicluster.R | 10 +++--- R/ordiellipse.R | 14 +++----- R/ordispider.R | 15 ++++----- R/ordisurf.R | 10 +++--- R/vegemite.R | 6 +-- R/zzz.R | 9 +++-- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.md | 28 +++++++++++++++++ inst/doc/FAQ-vegan.R | 8 ++--- inst/doc/decision-vegan.pdf |binary inst/doc/diversity-vegan.pdf |binary inst/doc/intro-vegan.pdf |binary inst/doc/partitioning.pdf |binary man/designdist.Rd | 9 ++++- man/envfit.Rd | 3 - man/metaMDS.Rd | 3 + man/ordihull.Rd | 15 +++------ man/ordisurf.Rd | 18 ++++++----- src/getF.c | 31 ++++++++----------- tests/cca-object-tests.R | 2 - tests/cca-object-tests.Rout.save | 6 +-- 32 files changed, 190 insertions(+), 140 deletions(-)