Sun, 29 Mar 2015

Package MonetDB.R updated to version 0.9.7 with previous version 0.9.6 dated 2015-03-20

Title: Connect MonetDB to R
Description: Allows to pull data from MonetDB into R. Includes a DBI implementation and a dplyr backend.
Author: Hannes Muehleisen [aut, cre], Thomas Lumley [ctb], Anthony Damico [ctb]
Maintainer: Hannes Muehleisen

Diff between MonetDB.R versions 0.9.6 dated 2015-03-20 and 0.9.7 dated 2015-03-29

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Package snht updated to version 1.0.2 with previous version 1.0.1 dated 2015-01-25

Title: Standard Normal Homogeneity Test
Description: Robust and non-robust SNHT tests for changepoint detection.
Author: Josh Browning
Maintainer: Josh Browning

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Package pscl updated to version 1.4.9 with previous version 1.4.8 dated 2015-01-24

Title: Political Science Computational Laboratory, Stanford University
Description: Bayesian analysis of item-response theory (IRT) models, roll call analysis; computing highest density regions; maximum likelihood estimation of zero-inflated and hurdle models for count data; goodness-of-fit measures for GLMs; data sets used in writing and teaching at the Political Science Computational Laboratory; seats-votes curves.
Author: Simon Jackman, with contributions from Alex Tahk, Achim Zeileis, Christina Maimone and Jim Fearon
Maintainer: Simon Jackman

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Package Rd2roxygen updated to version 1.6 with previous version 1.5 dated 2014-08-24

Title: Convert Rd to Roxygen Documentation
Description: Functions to convert Rd to roxygen documentation. It can parse an Rd file to a list, create the roxygen documentation and update the original R script (e.g. the one containing the definition of the function) accordingly. This package also provides utilities which can help developers build packages using roxygen more easily. The formatR package can be used to reformat the R code in the examples sections so that the code will be more readable.
Author: Hadley Wickham [aut], Yihui Xie [aut, cre]
Maintainer: Yihui Xie

Diff between Rd2roxygen versions 1.5 dated 2014-08-24 and 1.6 dated 2015-03-29

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Package mirt updated to version 1.9 with previous version 1.8 dated 2015-01-22

Title: Multidimensional Item Response Theory
Description: Analysis of dichotomous and polytomous response data using unidimensional and multidimensional latent trait models under the Item Response Theory paradigm. Exploratory and confirmatory models can be estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory bi-factor and two-tier analyses are available for modeling item testlets. Multiple group analysis and mixed effects designs also are available for detecting differential item functioning and modelling item and person covariates.
Author: Phil Chalmers [aut, cre, cph], Joshua Pritikin [ctb], Alexander Robitzsch [ctb], Mateusz Zoltak [ctb]
Maintainer: Phil Chalmers

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Package mime updated to version 0.3 with previous version 0.2 dated 2014-09-26

Title: Map Filenames to MIME Types
Description: Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.
Author: Jeffrey Horner [ctb], Yihui Xie [aut, cre]
Maintainer: Yihui Xie

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Package highr updated to version 0.4.1 with previous version 0.4 dated 2014-10-23

Title: Syntax Highlighting for R Source Code
Description: Provides syntax highlighting for R source code. Currently it supports LaTeX and HTML output. Source code of other languages is supported via Andre Simon's highlight package (http://www.andre-simon.de).
Author: Christopher Gandrud [ctb], Qiang Li [ctb], Yixuan Qiu [aut], Yihui Xie [aut, cre]
Maintainer: Yihui Xie

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Package ggRandomForests updated to version 1.1.4 with previous version 1.1.3 dated 2015-01-08

Title: Visually Exploring Random Forests
Description: Graphic elements for exploring Random Forests using the randomForestSRC package for survival, regression and classification forests and ggplot2 package plotting.
Author: John Ehrlinger
Maintainer: John Ehrlinger

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Package formatR updated to version 1.1 with previous version 1.0 dated 2014-08-24

Title: Format R Code Automatically
Description: Provides a function tidy_source() to format R source code. Spaces and indent will be added to the code automatically, and comments will be preserved under certain conditions, so that R code will be more human-readable and tidy. There is also a Shiny app as a user interface in this package (see tidy_app()).
Author: Yihui Xie
Maintainer: Yihui Xie

Diff between formatR versions 1.0 dated 2014-08-24 and 1.1 dated 2015-03-29

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Package empiricalFDR.DESeq2 updated to version 1.0.1 with previous version 1.0 dated 2014-11-25

Title: Simulation-Based False Discovery Rate in RNA-Seq
Description: Auxiliary functions for the DESeq2 package to simulate read counts according to the null hypothesis (i.e., with empirical sample size factors, per-gene total counts and dispersions, but without effects of predictor variables) and to compute the empirical false discovery rate.
Author: Mikhail V. Matz
Maintainer: Mikhail V. Matz

Diff between empiricalFDR.DESeq2 versions 1.0 dated 2014-11-25 and 1.0.1 dated 2015-03-29

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Package adehabitatLT updated to version 0.3.19 with previous version 0.3.18 dated 2015-03-27

Title: Analysis of Animal Movements
Description: A collection of tools for the analysis of animal movements.
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge

Diff between adehabitatLT versions 0.3.18 dated 2015-03-27 and 0.3.19 dated 2015-03-29

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Sat, 28 Mar 2015

Package DoE.base updated to version 0.27 with previous version 0.26-3 dated 2014-09-29

Title: Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages
Description: Package \pkg{DoE.base} creates full factorial experimental designs and designs based on orthogonal arrays for (industrial) experiments. Additionally, it provides utility functions for the class \code{design}, which is also used by other packages for designed experiments.
Author: Ulrike Groemping [aut, cre], Boyko Amarov [ctb], Hongquan Xu [ctb]
Maintainer: Ulrike Groemping

Diff between DoE.base versions 0.26-3 dated 2014-09-29 and 0.27 dated 2015-03-28

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New package flowr with initial version 0.9.6.5
Package: flowr
Type: Package
Title: Streamlining Design and Deployment of Complex Workflows
Description: An interface to streamline design of complex workflows and their deployment to a High Performance Computing Cluster.
Version: 0.9.6.5
Depends: methods, stats, diagram
Imports: knitr, ggplot2, RSQLite, reshape2
Date: 2015-03-27
VignetteBuilder: knitr
URL: https://github.com/sahilseth/flowr
BugReports: https://github.com/sahilseth/flowr/issues
Authors@R: c(person("Sahil", "Seth", role = c("aut", "cre"), email = "me@sahilseth.com"))
License: MIT + file LICENSE
Packaged: 2015-03-28 01:20:25 UTC; sseth
Author: Sahil Seth [aut, cre]
Maintainer: Sahil Seth
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-29 01:24:16

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Package WGCNA updated to version 1.46 with previous version 1.43 dated 2015-01-15

Title: Weighted Correlation Network Analysis
Description: Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
Author: Peter Langfelder and Steve Horvath with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang
Maintainer: Peter Langfelder

Diff between WGCNA versions 1.43 dated 2015-01-15 and 1.46 dated 2015-03-28

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New package spgs with initial version 1.0
Package: spgs
Type: Package
Encoding: latin1
Title: Statistical Patterns in Genomic Sequences
Version: 1.0
Date: 2015-03-27
Authors@R: c(person("Andrew", "Hart", role = c("aut", "cre"), email = "ahart@dim.uchile.cl"), person("Servet", "MartÝnez", role = "aut"), person("Universidad de Chile", role = "cph"), person("INRIA-Chile", role = "cph"))
Author: Andrew Hart [aut, cre], Servet MartÝnez [aut], Universidad de Chile [cph], INRIA-Chile [cph]
Maintainer: Andrew Hart
Copyright: Universidad de Chile, INRIA-Chile
Depends: R (>= 3.0)
Enhances: seqinr
Description: A collection of statistical hypothesis tests and other techniques for identifying certain spatial relationships/phenomena in DNA sequences. In particular, it provides tests and graphical methods for determining whether or not DNA sequences comply with Chargaff's second parity rule or exhibit purine-pyrimidine parity. In addition, there are functions for efficiently simulating discrete state space Markov chains and testing arbitrary symbolic sequences of symbols for the presence of first-order Markovianness. Also, it has functions for counting words/k-mers (and cylinder patterns) in arbitrary symbolic sequences. Functions which take a DNA sequence as input can handle sequences stored as SeqFastadna objects from the 'seqinr' package.
License: GPL (>= 2)
NeedsCompilation: yes
Classification/MSC: 62F03, 62G10, 62M07, 62P10, 92D20
Packaged: 2015-03-28 01:05:50 UTC; ahart
Repository: CRAN
Date/Publication: 2015-03-28 07:40:29

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Package Exact updated to version 1.5 with previous version 1.4 dated 2013-07-22

Title: Unconditional Exact Test
Description: Performs unconditional exact tests and power calculations for 2x2 contingency tables. Unconditional exact tests are often more powerful than conditional exact tests and asymptotic tests.
Author: Peter Calhoun
Maintainer: Peter Calhoun

Diff between Exact versions 1.4 dated 2013-07-22 and 1.5 dated 2015-03-28

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Fri, 27 Mar 2015

New package StatMeasures with initial version 1.0
Package: StatMeasures
Type: Package
Title: Easy Data Manipulation, Data Quality and Statistical Checks
Version: 1.0
Date: 2015-03-24
Author: Akash Jain
Maintainer: Akash Jain
Description: Offers useful functions to perform day-to-day data manipulation operations, data quality checks and post modelling statistical checks. One can effortlessly change class of a number of variables to factor, remove duplicate observations from the data, create deciles of a variable, perform data quality checks for continuous (integer or numeric), categorical (factor) and date variables, and compute goodness of fit measures such as auc for statistical models. The functions are consistent for objects of class 'data.frame' and 'data.table', which is an enhanced 'data.frame' implemented in the package 'data.table'.
Depends: R (>= 3.1.3)
Imports: data.table (>= 1.9.4)
License: GPL-2
Packaged: 2015-03-27 19:59:01 UTC; akash.jain
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-27 23:46:22

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New package SOMbrero with initial version 1.0
Package: SOMbrero
Title: SOM Bound to Realize Euclidean and Relational Outputs
Version: 1.0
Date: 2015-03-27
Authors@R: c(person("Laura", "Bendhaiba", role = "aut", email="laurabendhaiba@gmail.com"), person("Julien", "Boelaert", role= "aut", email="julien.boelaert@gmail.com"), person("Madalina", "Olteanu", role = "aut", email="madalina.olteanu@univ-paris1.fr"), person("Nathalie", "Villa-Vialaneix", role = c("aut", "cre"), email="nathalie.villa@toulouse.inra.fr"))
Maintainer: Nathalie Villa-Vialaneix
Description: The stochastic (also called on-line) version of the Self-Organising Map (SOM) algorithm is provided. Different versions of the algorithm are implemented, for numeric and relational data and for contingency tables. The package also contains many plotting features (to help the user interpret the results) and a graphical user interface based on shiny (which is also available on-line at http://shiny.nathalievilla.org/sombrero).
Depends: R (>= 3.0), knitr, igraph (>= 0.6)
Imports: wordcloud, scatterplot3d, RColorBrewer, shiny
License: GPL (>= 2)
Repository: CRAN
VignetteBuilder: knitr
Packaged: 2015-03-27 20:51:28 UTC; nathalie
Author: Laura Bendhaiba [aut], Julien Boelaert [aut], Madalina Olteanu [aut], Nathalie Villa-Vialaneix [aut, cre]
NeedsCompilation: no
Date/Publication: 2015-03-27 23:44:41

More information about SOMbrero at CRAN
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Package miniCRAN updated to version 0.2.4 with previous version 0.2.2 dated 2015-03-26

Title: Create a Mini Version of CRAN Containing Only Selected Packages
Description: Makes it possible to create an internally consistent repository consisting of selected packages from CRAN-like repositories. The user specifies a set of desired packages, and miniCRAN recursively reads the dependency tree for these packages, then downloads only this subset. The user can then install packages from this repository directly, rather than from CRAN. This is useful in production settings, e.g. server behind a firewall, or remote locations with slow broadband access.
Author: Revolution Analytics [aut], Andrie de Vries [aut, cre], Alex Chubaty [ctb]
Maintainer: Andrie de Vries

Diff between miniCRAN versions 0.2.2 dated 2015-03-26 and 0.2.4 dated 2015-03-27

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Package HiDimDA updated to version 0.2-3 with previous version 0.2-2 dated 2014-10-25

Title: High Dimensional Discriminant Analysis
Description: Performs linear discriminant analysis in high dimensional problems based on reliable covariance estimators for problems with (many) more variables than observations. Includes routines for classifier training, prediction, cross-validation and variable selection.
Author: Antonio Pedro Duarte Silva
Maintainer: Antonio Pedro Duarte Silva

Diff between HiDimDA versions 0.2-2 dated 2014-10-25 and 0.2-3 dated 2015-03-27

 CHANGELOG     |    7 +++-
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Package AutoSEARCH updated to version 1.5 with previous version 1.4 dated 2014-12-22

Title: General-to-Specific (GETS) Modelling
Description: General-to-Specific (GETS) modelling of the mean and variance of a regression. NOTE: The package has been succeeded by gets, also available on the CRAN, which is more user-friendly, faster and easier to extend. Users are therefore encouraged to consider gets instead.
Author: Genaro Sucarrat
Maintainer: Genaro Sucarrat

Diff between AutoSEARCH versions 1.4 dated 2014-12-22 and 1.5 dated 2015-03-27

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Package tmap updated to version 0.7 with previous version 0.6 dated 2014-07-30

Title: Thematic Maps
Description: Thematic maps are geographical maps in which statistical data are visualized. This package offers a flexible, layer-based, way to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes
Maintainer: Martijn Tennekes

Diff between tmap versions 0.6 dated 2014-07-30 and 0.7 dated 2015-03-27

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Package HiClimR updated to version 1.2.0 with previous version 1.1.6 dated 2015-03-01

Title: Hierarchical Climate Regionalization
Description: A tool for Hierarchical Climate Regionalization applicable to any correlation-based clustering. It adds several features and a new clustering method (called, 'regional' linkage) to hierarchical clustering in R ('hclust' function in 'stats' library): data regridding, coarsening spatial resolution, geographic masking (by continents, regions, or countries), data filtering by mean and/or variance thresholds, data preprocessing (detrending, standardization, and PCA), faster correlation function with preliminary big data support, hybrid hierarchical clustering, multi-variate clustering (MVC), cluster validation, and visualization of region maps.
Author: Hamada S. Badr [aut, cre], Benjamin F. Zaitchik [aut], Amin K. Dezfuli [aut]
Maintainer: Hamada S. Badr

Diff between HiClimR versions 1.1.6 dated 2015-03-01 and 1.2.0 dated 2015-03-27

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New package gdm with initial version 1.0
Package: gdm
Type: Package
Title: Functions for Generalized Dissimilarity Modeling
Version: 1.0
Date: 2015-03-27
Author: Glenn Manion, Matthew Lisk, Simon Ferrier, Diego Nieto-Lugilde, Matthew C. Fitzpatrick
Maintainer: Matthew C. Fitzpatrick
Description: A toolkit with functions to fit, plot, and summarize Generalized Dissimilarity Models.
License: GPL-2
Depends: R (>= 2.15.2), Rcpp (>= 0.10.4), raster, reshape2, vegan
LinkingTo: Rcpp
Imports: plyr
Packaged: 2015-03-27 18:56:55 UTC; mlisk
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-03-27 20:58:26

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Package LPStimeSeries updated to version 1.0-5 with previous version 1.0-4 dated 2015-01-09

Title: Learned Pattern Similarity and Representation for Time Series
Description: Learned Pattern Similarity (LPS) for time series. Implements a novel approach to model the dependency structure in time series that generalizes the concept of autoregression to local auto-patterns. Generates a pattern-based representation of time series along with a similarity measure called Learned Pattern Similarity (LPS). Introduces a generalized autoregressive kernel.This package is based on the 'randomForest' package by Andy Liaw.
Author: Learned Pattern Similarity (LPS) for time series by Mustafa Gokce Baydogan
Maintainer: Mustafa Gokce Baydogan

Diff between LPStimeSeries versions 1.0-4 dated 2015-01-09 and 1.0-5 dated 2015-03-27

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Package fanc updated to version 1.23 with previous version 1.22 dated 2015-03-18

Title: Penalized Likelihood Factor Analysis via Nonconvex Penalty
Description: An R package "fanc" computes the penalized maximum likelihood estimates of factor loadings and unique variances for various tuning parameters. The pathwise coordinate descent along with EM algorithm is used. This package also includes a new graphical tool which outputs path diagram, goodness-of-fit indices and model selection criteria for each regularization parameter. The user can change the regularization parameter by manipulating scrollbars, which is helpful to find a suitable value of regularization parameter.
Author: Kei Hirose, Michio Yamamoto, Haruhisa Nagata
Maintainer: Kei Hirose

Diff between fanc versions 1.22 dated 2015-03-18 and 1.23 dated 2015-03-27

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Package adehabitat updated to version 1.8.17 with previous version 1.8.15 dated 2014-12-17

Title: Analysis of Habitat Selection by Animals
Description: A collection of tools for the analysis of habitat selection by animals.
Author: Clement Calenge, contributions from Mathieu Basille, Stephane Dray and Scott Fortmann-Roe
Maintainer: Clement Calenge

Diff between adehabitat versions 1.8.15 dated 2014-12-17 and 1.8.17 dated 2015-03-27

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Package tm.plugin.europresse updated to version 1.2 with previous version 1.1 dated 2014-06-11

Title: Import Articles from 'Europresse' Using the 'tm' Text Mining Framework
Description: Provides a 'tm' Source to create corpora from articles exported from the 'Europresse' content provider as HTML files. It is able to read both text content and meta-data information (including source, date, title, author and pages).
Author: Milan Bouchet-Valat [aut, cre]
Maintainer: Milan Bouchet-Valat

Diff between tm.plugin.europresse versions 1.1 dated 2014-06-11 and 1.2 dated 2015-03-27

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Package eurostat updated to version 1.0.16 with previous version 1.0.15 dated 2015-03-20

Title: Tools for Eurostat Open Data
Description: Tools to download data from the Eurostat database http://ec.europa.eu/eurostat/ together with search and manipulation utilities.
Author: Lahti Leo [aut, cre], Biecek Przemyslaw [aut], Kainu Markus [aut], Huovari Janne [aut]
Maintainer: Lahti Leo

Diff between eurostat versions 1.0.15 dated 2015-03-20 and 1.0.16 dated 2015-03-27

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Package adehabitatMA updated to version 0.3.9 with previous version 0.3.8 dated 2013-09-23

Title: Tools to Deal with Raster Maps
Description: A collection of tools to deal with raster maps.
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge

Diff between adehabitatMA versions 0.3.8 dated 2013-09-23 and 0.3.9 dated 2015-03-27

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Package adehabitatLT updated to version 0.3.18 with previous version 0.3.17 dated 2014-12-17

Title: Analysis of Animal Movements
Description: A collection of tools for the analysis of animal movements.
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge

Diff between adehabitatLT versions 0.3.17 dated 2014-12-17 and 0.3.18 dated 2015-03-27

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Package adehabitatHS updated to version 0.3.11 with previous version 0.3.10 dated 2014-12-17

Title: Analysis of Habitat Selection by Animals
Description: A collection of tools for the analysis of habitat selection.
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge

Diff between adehabitatHS versions 0.3.10 dated 2014-12-17 and 0.3.11 dated 2015-03-27

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Package adehabitatHR updated to version 0.4.13 with previous version 0.4.12 dated 2014-12-17

Title: Home Range Estimation
Description: A collection of tools for the estimation of animals home range.
Author: Clement Calenge, contributions from Scott Fortmann-Roe
Maintainer: Clement Calenge

Diff between adehabitatHR versions 0.4.12 dated 2014-12-17 and 0.4.13 dated 2015-03-27

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Package rDEA updated to version 1.1-1 with previous version 1.0-2 dated 2014-12-21

Title: Robust Data Envelopment Analysis (DEA) for R
Description: Data Envelopment Analysis for R, estimating robust DEA scores without and with environmental variables and doing returns-to-scale tests.
Author: Jaak Simm [aut, cre], Galina Besstremyannaya [aut]
Maintainer: Jaak Simm

Diff between rDEA versions 1.0-2 dated 2014-12-21 and 1.1-1 dated 2015-03-27

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Package RAdwords updated to version 0.1.2 with previous version 0.1.1 dated 2014-11-11

Title: Loading Google Adwords Data into R
Description: The aim of RAdwords is loading Adwords data into R. Therefore the package implements three main features. First, the package provides an authentication process for R with the Adwords API via OAUTH2. Second, the package offers an interface to apply the Adwords query language in R and query the Adwords API with ad-hoc reports. Third, the received data are transformed into suitable data formats for further data processing and data analysis.
Author: Johannes Burkhardt , Matthias Bannert
Maintainer: Johannes Burkhardt

Diff between RAdwords versions 0.1.1 dated 2014-11-11 and 0.1.2 dated 2015-03-27

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 RAdwords-0.1.2/RAdwords/DESCRIPTION                                                      |   12 
 RAdwords-0.1.2/RAdwords/LICENSE                                                          |    2 
 RAdwords-0.1.2/RAdwords/MD5                                                              |  170 ++++++----
 RAdwords-0.1.2/RAdwords/NAMESPACE                                                        |    2 
 RAdwords-0.1.2/RAdwords/NEWS                                                             |only
 RAdwords-0.1.2/RAdwords/R/getData.R                                                      |    6 
 RAdwords-0.1.2/RAdwords/R/metrics.R                                                      |   14 
 RAdwords-0.1.2/RAdwords/R/reports.R                                                      |   16 
 RAdwords-0.1.2/RAdwords/R/statement.R                                                    |    2 
 RAdwords-0.1.2/RAdwords/R/transformData.R                                                |   35 +-
 RAdwords-0.1.2/RAdwords/README.md                                                        |   10 
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 RAdwords-0.1.2/RAdwords/man/doAuth.Rd                                                    |    3 
 RAdwords-0.1.2/RAdwords/man/getAuth.Rd                                                   |    3 
 RAdwords-0.1.2/RAdwords/man/getData.Rd                                                   |    9 
 RAdwords-0.1.2/RAdwords/man/loadToken.Rd                                                 |    3 
 RAdwords-0.1.2/RAdwords/man/metrics.Rd                                                   |    7 
 RAdwords-0.1.2/RAdwords/man/refreshToken.Rd                                              |    3 
 RAdwords-0.1.2/RAdwords/man/reports.Rd                                                   |    8 
 RAdwords-0.1.2/RAdwords/man/statement.Rd                                                 |    5 
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Package rsprng (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-03-09 1.0
2008-06-08 0.4
2007-05-10 0.3-4

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Package hgm (with last version 1.10) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-03-27 1.10

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New package PAFit with initial version 0.7.2
Package: PAFit
Type: Package
Title: Nonparametric Estimation of Preferential Attachment and Node Fitness in Temporal Complex Networks
Version: 0.7.2
Date: 2015-03-28
Author: Thong Pham, Paul Sheridan, Hidetoshi Shimodaira
Maintainer: Thong Pham
Description: A statistically sound method for estimating jointly the attachment function and node fitness in a temporal complex network by maximizing a suitable penalized log-likelihood function is implemented in this package.
URL: www.thongpham.net
License: GPL-3
Depends: R(>= 2.10.0)
Imports: Rcpp (>= 0.11.3)
LinkingTo: Rcpp
LazyData: True
NeedsCompilation: yes
Suggests: R.rsp
VignetteBuilder: R.rsp
Packaged: 2015-03-27 06:49:35 UTC; pham
Repository: CRAN
Date/Publication: 2015-03-27 08:31:40

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New package ELYP with initial version 0.7-1
Package: ELYP
Maintainer: Mai Zhou
Version: 0.7-1
Depends: R (>= 2.15.0), survival
Suggests: emplik
Author: Mai Zhou
Description: Empirical likelihood ratio tests for the Yang and Prentice (short/long term hazard ratio) models. Empirical likelihood tests within a Cox model, for parameters defined via both baseline hazard function and regression parameters.
Title: Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model
License: GPL (>= 2)
URL: http://www.ms.uky.edu/~mai/EmpLik.html
NeedsCompilation: yes
Packaged: 2015-03-27 06:41:46 UTC; mai
Repository: CRAN
Date/Publication: 2015-03-27 08:31:37

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New package SAMUR with initial version 0.6
Package: SAMUR
Type: Package
Title: Stochastic Augmentation of Matched Data Using Restriction Methods
Version: 0.6
Date: 2015-03-26
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani
Description: Augmenting a matched data set by generating multiple stochastic, matched samples from the data using a multi-dimensional histogram constructed from dropping the input matched data into a multi-dimensional grid built on the full data set. The resulting stochastic, matched sets will likely provide a collectively higher coverage of the full data set compared to the single matched set. Each stochastic match is without duplication, thus allowing downstream validation techniques such as cross-validation to be applied to each set without concern for overfitting.
License: GPL (>= 2)
Imports: Matching
Packaged: 2015-03-27 02:20:08 UTC; amahani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-27 07:15:54

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Package s20x updated to version 3.1-15 with previous version 3.1-12 dated 2015-02-13

Title: Functions for University of Auckland Course STATS 201/208 Data Analysis
Description: A set of functions used in teaching STATS 201/208 Data Analysis at the University of Auckland. The functions are designed to make parts of R more accessible to a large undergraduate population who are mostly not statistics majors.
Author: Andrew Balemi, Dineika Chandra, James Curran, Brant Deppa, Mike Forster, Brendan McArdle, Chris Wild
Maintainer: James Curran

Diff between s20x versions 3.1-12 dated 2015-02-13 and 3.1-15 dated 2015-03-27

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New package hgm with initial version 1.10
Package: hgm
Type: Package
Depends: R (>= 2.6.0), deSolve
Title: Holonomic Gradient Method and Gradient Descent
Version: 1.10
Date: 2015-03-26
Author: Nobuki Takayama, Tamio Koyama, Tomonari Sei, Hiromasa Nakayama, Kenta Nishiyama
Maintainer: Nobuki Takayama
Description: The holonomic gradient method (HGM, hgm) gives a way to evaluate normalization constants of unnormalized probability distributions by utilizing holonomic systems of differential or difference equations. The holonomic gradient descent (HGD, hgd) gives a method to find maximal likelihood estimates by utilizing the HGM.
License: GPL-2
LazyLoad: yes
URL: http://www.openxm.org
Packaged: 2015-03-27 02:38:17 UTC; taka
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-03-27 07:16:52

More information about hgm at CRAN
Permanent link

Thu, 26 Mar 2015

Package UNF updated to version 2.0.1 with previous version 2.0 dated 2015-03-21

Title: Tools for Creating Universal Numeric Fingerprints for Data
Description: Computes a universal numeric fingerprint (UNF) for an R data object. UNF is a cryptographic hash or signature that can be used to uniquely identify (a version of) a rectangular dataset, or a subset thereof. UNF can be used, in tandem with a DOI, to form a persistent citation to a versioned dataset.
Author: Thomas Leeper [aut, cre], Micah Altman [aut]
Maintainer: Thomas Leeper

Diff between UNF versions 2.0 dated 2015-03-21 and 2.0.1 dated 2015-03-26

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More information about UNF at CRAN
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Package secrdesign updated to version 2.3.0 with previous version 2.2.2 dated 2015-01-11

Title: Sampling Design for Spatially Explicit Capture-Recapture
Description: Tools are provided for designing spatially explicit capture-recapture studies of animal populations. This is primarily a simulation manager for package 'secr'.
Author: Murray Efford
Maintainer: Murray Efford

Diff between secrdesign versions 2.2.2 dated 2015-01-11 and 2.3.0 dated 2015-03-26

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New package reval with initial version 1.0
Package: reval
Title: Repeated Function Evaluation for Sensitivity Analysis
Version: 1.0
Date: 2015-03-25
Author: Michael C Koohafkan [aut, cre]
Maintainer: Michael C Koohafkan
Description: Simplified scenario testing and sensitivity analysis with R via a generalized function for one-factor-at-a-time (OFAT) sensitivity analysis, evaluation of parameter sets and (sampled) parameter permutations. Options for formatting output and parallel processing are also provided.
URL: https://github.com/mkoohafkan/reval
BugReports: https://github.com/mkoohafkan/reval/issues
License: GPL (>= 3)
Depends: R (>= 3.1.3)
Imports: doParallel (>= 1.0.8), foreach (>= 1.4.2)
Suggests: knitr, ggplot2, dplyr, rivr
VignetteBuilder: knitr
Packaged: 2015-03-26 17:09:50 UTC; Michael
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-27 00:47:32

More information about reval at CRAN
Permanent link

New package ggExtra with initial version 0.1.0
Package: ggExtra
Title: Collection of Functions and Layers to Enhance ggplot2
Version: 0.1.0
Authors@R: c( person("Dean", "Attali", , "daattali@gmail.com", role = c("aut", "cre")) )
Description: Collection of functions and layers to enhance ggplot2.
URL: https://github.com/daattali/ggExtra
Depends: R (>= 3.1.0)
Imports: ggplot2 (>= 1.0.0)
Suggests: grid (>= 3.1.3), gridExtra (>= 0.9.1), knitr (>= 1.7)
License: MIT + file LICENSE
LazyData: true
VignetteBuilder: knitr
Packaged: 2015-03-26 20:22:53 UTC; Dean
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-27 00:46:19

More information about ggExtra at CRAN
Permanent link

Package sandwich updated to version 2.3-3 with previous version 2.3-2 dated 2014-08-24

Title: Robust Covariance Matrix Estimators
Description: Model-robust standard error estimators for cross-sectional, time series, and longitudinal data.
Author: Thomas Lumley [aut], Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis

Diff between sandwich versions 2.3-2 dated 2014-08-24 and 2.3-3 dated 2015-03-26

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Package zoib updated to version 1.2.1 with previous version 1.2 dated 2015-02-18

Title: Bayesian Inference for Beta Regression and Zero/One Inflated Beta Regression
Description: Fits beta regression and zero/one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu with contributions from Yunchuan Kong
Maintainer: Fang Liu

Diff between zoib versions 1.2 dated 2015-02-18 and 1.2.1 dated 2015-03-26

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Package Surrogate updated to version 0.1-5 with previous version 0.1-4 dated 2014-12-12

Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a biomarker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Ariel Alonso & Geert Molenberghs
Maintainer: Wim Van der Elst

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Package rr updated to version 1.3 with previous version 1.2 dated 2015-03-21

Title: Statistical Methods for the Randomized Response Technique
Description: Enables researchers to conduct multivariate statistical analyses of survey data with randomized response technique items from several designs, including mirrored question, forced question, and unrelated question. This includes regression with the randomized response as the outcome and logistic regression with the randomized response item as a predictor. In addition, tools for conducting power analysis for designing randomized response items are included. The package implements methods described in Blair, Imai, and Zhou (2015) ''Design and Analysis of the Randomized Response Technique,'' Working paper available at .
Author: Graeme Blair , Yang-Yang Zhou , Kosuke Imai
Maintainer: Graeme Blair

Diff between rr versions 1.2 dated 2015-03-21 and 1.3 dated 2015-03-26

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Package ROCR updated to version 1.0-7 with previous version 1.0-6 dated 2015-03-22

Title: Visualizing the Performance of Scoring Classifiers
Description: ROC graphs, sensitivity/specificity curves, lift charts, and precision/recall plots are popular examples of trade-off visualizations for specific pairs of performance measures. ROCR is a flexible tool for creating cutoff-parameterized 2D performance curves by freely combining two from over 25 performance measures (new performance measures can be added using a standard interface). Curves from different cross-validation or bootstrapping runs can be averaged by different methods, and standard deviations, standard errors or box plots can be used to visualize the variability across the runs. The parameterization can be visualized by printing cutoff values at the corresponding curve positions, or by coloring the curve according to cutoff. All components of a performance plot can be quickly adjusted using a flexible parameter dispatching mechanism. Despite its flexibility, ROCR is easy to use, with only three commands and reasonable default values for all optional parameters.
Author: Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
Maintainer: Tobias Sing

Diff between ROCR versions 1.0-6 dated 2015-03-22 and 1.0-7 dated 2015-03-26

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Package quantspec updated to version 1.0-3 with previous version 1.0-2 dated 2014-11-21

Title: Quantile-Based Spectral Analysis of Time Series
Description: Methods to determine, smooth and plot quantile (i. e., Laplace or copula) periodograms for univariate time series.
Author: Tobias Kley [aut, cre]
Maintainer: Tobias Kley

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Package miniCRAN updated to version 0.2.2 with previous version 0.1-1 dated 2014-10-01

Title: Create a Mini Version of CRAN Containing Only Selected Packages
Description: Makes it possible to create an internally consistent repository consisting of selected packages from CRAN-like repositories. The user specifies a set of desired packages, and miniCRAN recursively reads the dependency tree for these packages, then downloads only this subset. The user can then install packages from this repository directly, rather than from CRAN. This is useful in production settings, e.g. server behind a firewall, or remote locations with slow broadband access.
Author: Revolution Analytics [aut], Andrie de Vries [aut, cre], Alex Chubaty [ctb]
Maintainer: Andrie de Vries

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Package MazamaSpatialUtils updated to version 0.2.3 with previous version 0.2.2 dated 2015-03-01

Title: Mazama Science Spatial Data Download and Utility Functions
Description: A suite of conversion scripts to create internally standardized spatial polygons dataframes. Utility scripts use these datasets to return values such as country, state, timezone, watershed, etc. associated with a set of longitude/latitude pairs. (They also make cool maps.)
Author: Jonathan Callahan [aut, cre], Will Leahy [aut], Henry Nguyen [aut]
Maintainer: Jonathan Callahan

Diff between MazamaSpatialUtils versions 0.2.2 dated 2015-03-01 and 0.2.3 dated 2015-03-26

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Package interpretR updated to version 0.2.1 with previous version 0.2.0 dated 2014-12-19

Title: Binary Classifier Interpretation Functions
Description: Compute permutation- based performance measures and create partial dependence plots for (cross-validated) randomForest and ada models.
Author: Michel Ballings and Dirk Van den Poel
Maintainer: Michel Ballings

Diff between interpretR versions 0.2.0 dated 2014-12-19 and 0.2.1 dated 2015-03-26

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Package descomponer updated to version 1.2 with previous version 1.1 dated 2014-11-12

Title: Seasonal Adjustment by Frequency Analysis
Description: Decompose a time series into seasonal, trend and irregular components using transformations to amplitude-frequency domain.
Author: Francisco Parra
Maintainer: Francisco Parra

Diff between descomponer versions 1.1 dated 2014-11-12 and 1.2 dated 2015-03-26

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Package Crossover updated to version 0.1-14 with previous version 0.1-13 dated 2014-10-31

Title: Analysis and Search of Crossover Designs
Description: Package Crossover provides different crossover designs from combinatorial or search algorithms as well as from literature and a GUI to access them.
Author: Kornelius Rohmeyer
Maintainer: Kornelius Rohmeyer

Diff between Crossover versions 0.1-13 dated 2014-10-31 and 0.1-14 dated 2015-03-26

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New package chopthin with initial version 0.1
Package: chopthin
Type: Package
Title: The Chopthin Resampler
Version: 0.1
Date: 2015-03-26
Author: Axel Gandy and F. Din-Houn Lau
Maintainer: Axel Gandy
Description: Resampling is a standard step in particle filtering and in sequential Monte Carlo. This package implements the chopthin resampler, which keeps a bound on the ratio between the largest and the smallest weights after resampling.
License: GPL-3
Imports: Rcpp (>= 0.11.2)
LinkingTo: Rcpp
Suggests: testthat
Packaged: 2015-03-26 16:41:22 UTC; agandy
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-03-26 18:06:09

More information about chopthin at CRAN
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Package survsim updated to version 1.1.3 with previous version 1.1.2 dated 2014-07-23

Title: Simulation of Simple and Complex Survival Data
Description: Simulation of simple and complex survival data including recurrent and multiple events and competing risks.
Author: David Mori├▒a (Centre for Research in Environmental Epidemiology, CREAL) and Albert Navarro (Universitat Aut├▓noma de Barcelona)
Maintainer: David Mori├▒a Soler

Diff between survsim versions 1.1.2 dated 2014-07-23 and 1.1.3 dated 2015-03-26

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Package nodiv updated to version 1.0.3 with previous version 1.0.2 dated 2015-03-05

Title: Compares the Distribution of Sister Clades Through a Phylogeny
Description: An implementation of the nodiv algorithm, (see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. DOI: 10.1111/2041-210X.12283. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Author: Michael Krabbe Borregaard
Maintainer: Michael Krabbe Borregaard

Diff between nodiv versions 1.0.2 dated 2015-03-05 and 1.0.3 dated 2015-03-26

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Package timeseriesdb updated to version 0.2 with previous version 0.1 dated 2014-11-26

Title: Manage Time Series with R and PostgreSQL
Description: Store and organize a large amount of low frequency time series data. The package was designed to manage a large catalog of official statistics which are typically published on monthly, quarterly or yearly basis. Thus timeseriesdb is optimized to handle a large number of lower frequency time series as opposed to a smaller amount of high frequency time series such as real time data from measuring devices. Hence timeseriesdb provides the opportunity to store extensive multi-lingual meta information. The package also provides a web GUI to explore the underlying PostgreSQL database interactively.
Author: "Matthias Bannert [aut, cre]"
Maintainer: 'Matthias Bannert'

Diff between timeseriesdb versions 0.1 dated 2014-11-26 and 0.2 dated 2015-03-26

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Package shinyFiles updated to version 0.6.0 with previous version 0.5.0 dated 2015-01-30

Title: A Server-Side File System Viewer For Shiny
Description: Provides functionality for client-side navigation of the server side file system in shiny apps. In case the app is running locally this gives the user direct access to the file system without the need to "download" files to a temporary location. Both file and folder selection as well as file saving is available.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen

Diff between shinyFiles versions 0.5.0 dated 2015-01-30 and 0.6.0 dated 2015-03-26

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Package repmis updated to version 0.4.2 with previous version 0.4 dated 2015-01-23

Title: Miscellaneous Tools for Reproducible Research
Description: Tools to load R packages and automatically generate BibTeX files citing them as well as load plain-text and Excel formatted data stored on Dropbox, GitHub, and from other sources.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud

Diff between repmis versions 0.4 dated 2015-01-23 and 0.4.2 dated 2015-03-26

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New package kmodR with initial version 0.1.0
Package: kmodR
Type: Package
Title: K-Means with Simultaneous Outlier Detection
Version: 0.1.0
Date: 2015-03-26
Authors@R: c(person("David Charles", "Howe", role = c("aut", "cre"), email = "kmodR@edgecondition.com"))
Author: David Charles Howe [aut, cre]
Maintainer: David Charles Howe
Description: An implementation of the 'k-means--' algorithm proposed by Chawla and Gionis, 2013 in their paper, "k-means-- : A unified approach to clustering and outlier detection. SIAM International Conference on Data Mining (SDM13)", and using 'ordering' described by Howe, 2013 in the thesis, "Clustering and anomaly detection in tropical cyclones". Useful for creating (potentially) tighter clusters than standard k-means and simultaneously finding outliers inexpensively in multidimensional space.
License: GPL-3
LazyData: TRUE
Suggests: testthat
Packaged: 2015-03-26 08:09:09 UTC; David
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-26 10:51:13

More information about kmodR at CRAN
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Package KappaGUI updated to version 1.2 with previous version 1.1 dated 2013-01-30

Title: GUI for Cohen's and Fleiss' Kappa
Description: Offers a complete and interactive GUI to work out Cohen's and Fleiss' Kappa.
Author: Frederic Santos
Maintainer: Frederic Santos

Diff between KappaGUI versions 1.1 dated 2013-01-30 and 1.2 dated 2015-03-26

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Wed, 25 Mar 2015

Package jsonlite updated to version 0.9.15 with previous version 0.9.14 dated 2014-12-01

Title: A Robust, High Performance JSON Parser and Generator for R
Description: A fast JSON parser and generator optimized for statistical data and the web. Started out as a fork of RJSONIO, but has been completely rewritten in recent versions. The package offers flexible, robust, high performance tools for working with JSON in R and is particularly powerful for building pipelines and interacting with web APIs. The implementation is based on the mapping described in the vignette of the package (Ooms, 2014). In addition to drop-in replacements for toJSON and fromJSON, jsonlite contains functions to stream, validate, and prettify JSON data. The unit tests included with the package verify that all edge cases are encoded and decoded consistently for use with dynamic data in systems and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Lloyd Hilaiel
Maintainer: Jeroen Ooms

Diff between jsonlite versions 0.9.14 dated 2014-12-01 and 0.9.15 dated 2015-03-25

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Package fitbitScraper updated to version 0.1.2 with previous version 0.1.1 dated 2015-01-30

Title: Scrapes Data from Fitbit.com
Description: Scrapes data from fitbit.com. This does not use the official API, but instead uses the API that the web dashboard uses to generate the graphs displayed on the dashboard after login at www.fitbit.com.
Author: Cory Nissen [aut, cre]
Maintainer: Cory Nissen

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Package vines updated to version 1.1.3 with previous version 1.1.1 dated 2015-01-20

Title: Multivariate Dependence Modeling with Vines
Description: Implementation of the vine graphical model for building high-dimensional distributions as a factorization of bivariate copulas and marginal density functions. This package provides S4 classes for vines (C-vines and D-vines) and methods for inference, goodness-of-fit tests, density/distribution function evaluation, and simulation.
Author: Yasser Gonzalez-Fernandez [aut, cre], Marta Soto [aut]
Maintainer: Yasser Gonzalez-Fernandez

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Package glmgraph updated to version 1.0.1 with previous version 1.0.0 dated 2015-03-15

Title: Graph-Constrained Regularization for Sparse Generalized Linear Models
Description: We propose to use sparse regression model to achieve variable selection while accounting for graph-constraints among coefficients. Different linear combination of a sparsity penalty(L1) and a smoothness(MCP) penalty has been used, which induces both sparsity of the solution and certain smoothness on the linear coefficients.
Author: Li Chen, Jun Chen
Maintainer: Li Chen

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Package pheno2geno updated to version 1.3.1 with previous version 1.2.1 dated 2014-07-29

Title: High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains
Description: High-throughput generation of genetic markers from molecular phenotypes for crosses between inbred strains. These markers can be use to saturate existing genetic map or creating a new one.
Author: Konrad Zych and Danny Arends
Maintainer: Konrad Zych

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Package mapmisc updated to version 1.2.1 with previous version 1.2.0 dated 2015-03-23

Title: Utilities for Producing Maps
Description: A minimal, light-weight set of tools for producing nice looking maps in R.
Author: Patrick Brown [aut, cre], Barry Rowlingson [ctb]
Maintainer: Patrick Brown

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Package investr updated to version 1.3.0 with previous version 1.2.1 dated 2015-01-06

Title: Inverse Estimation/Calibration Functions
Description: Functions to facilitate inverse estimation/calibration in linear, generalized linear, nonlinear, and (linear) mixed models. A generic function is also provided for plotting fitted regression models with or without confidence/prediction bands that may be of use to the general user.
Author: Brandon M. Greenwell
Maintainer: Brandon M. Greenwell

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Package flexCWM updated to version 1.5 with previous version 1.4 dated 2015-01-31

Title: Flexible Cluster-Weighted Modeling
Description: Allows for maximum likelihood fitting of cluster-weighted models, a class of mixtures of regression models with random covariates.
Author: Mazza A., Punzo A., Ingrassia S.
Maintainer: Angelo Mazza

Diff between flexCWM versions 1.4 dated 2015-01-31 and 1.5 dated 2015-03-25

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Package sn updated to version 1.2-0 with previous version 1.1-2 dated 2014-12-01

Title: The Skew-Normal and Skew-t Distributions
Description: Define and manipulate probability distributions of the skew-normal family and some related ones (notably the skew-t family) and provide related statistical methods for data fitting and diagnostics, in the univariate and the multivariate case.
Author: Adelchi Azzalini
Maintainer: Adelchi Azzalini

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Package kohonen updated to version 2.0.18 with previous version 2.0.15 dated 2014-08-04

Title: Supervised and Unsupervised Self-Organising Maps
Description: Functions to train supervised and self-organising maps (SOMs). Also interrogation of the maps and prediction using trained maps are supported. The name of the package refers to Teuvo Kohonen, the inventor of the SOM.
Author: Ron Wehrens
Maintainer: Ron Wehrens

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New package hsdar with initial version 0.1.1
Package: hsdar
Type: Package
Title: Manage, Analyse and Simulate Hyperspectral Data in R
Version: 0.1.1
Date: 2015-03-23
Author: Lukas W. Lehnert [cre, aut], Hanna Meyer [ctb], Joerg Bendix [ctb]
Maintainer: Lukas W. Lehnert
Depends: R (>= 2.10.0), sp, raster, rgdal, rootSolve, signal, methods
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using PROSPECT and PROSAIL.
License: GPL
LazyLoad: yes
BuildVignettes: yes
Copyright: see file COPYRIGHTS
URL: http://lcrs.geographie.uni-marburg.de, http://teledetection.ipgp.jussieu.fr/prosail/
Packaged: 2015-03-23 09:32:58 UTC; lehnert
NeedsCompilation: yes
X-CRAN-History: Archived on 2015-03-06 as had memory-access errors and failed with parallel makes.
Repository: CRAN
Date/Publication: 2015-03-25 08:54:00

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Package hiddenf updated to version 1.2 with previous version 1.1 dated 2014-09-08

Title: The all-Configurations, Maximum-Interaction F-Test for Hidden Additivity
Description: Computes the F-test and Bonferroni-adjusted p-value for a test of interaction in two-factor studies. Reports corresponding interaction plot and analysis of variance table and p-values from several other tests of non-additivity.
Author: Jason A. Osborne, Christopher T. Franck and Bongseog Choi
Maintainer: Jason A. Osborne

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Package diseasemapping updated to version 1.2.0 with previous version 1.1.7 dated 2015-02-25

Title: Modelling Spatial Variation in Disease Risk for Areal Data
Description: Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using INLA.
Author: Patrick Brown
Maintainer: Patrick Brown

Diff between diseasemapping versions 1.1.7 dated 2015-02-25 and 1.2.0 dated 2015-03-25

 DESCRIPTION                   |   12 ++++-----
 MD5                           |   28 ++++++++++-----------
 R/bym.R                       |    1 
 R/getBreaks.R                 |    7 +++--
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 man/kentucky.Rd               |    1 
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 tests/cancerRates.R           |    1 
 tests/getSMR.R                |    7 +++--
 15 files changed, 98 insertions(+), 47 deletions(-)

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Tue, 24 Mar 2015

Package tumblR updated to version 1.1 with previous version 1.0 dated 2014-11-10

Title: Access to Tumblr v2 API
Description: Provides an R-interface to the Tumblr web API (see Tumblr v2 API on https://www.tumblr.com/docs/en/api/v2). Tumblr is a microblogging platform and social networking website (https://www.tumblr.com).
Author: Andrea Capozio
Maintainer: Andrea Capozio

Diff between tumblR versions 1.0 dated 2014-11-10 and 1.1 dated 2015-03-24

 DESCRIPTION          |   16 ++++++++--------
 MD5                  |   38 +++++++++++++++++++-------------------
 NAMESPACE            |    2 +-
 R/dashboard.R        |    2 +-
 R/def.postParams.R   |    4 ++--
 R/follow.R           |    2 +-
 R/followers.R        |    2 +-
 R/like.post.R        |    2 +-
 R/post.R             |    2 +-
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 R/posts.draft.R      |    2 +-
 R/posts.queue.R      |    2 +-
 R/posts.submission.R |    2 +-
 R/unfollow.R         |    2 +-
 R/unlike.post.R      |    2 +-
 R/user.following.R   |    2 +-
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Package timeROC updated to version 0.3 with previous version 0.2 dated 2013-05-27

Title: Time-Dependent ROC Curve and AUC for Censored Survival Data
Description: Estimation of time-dependent ROC curve and area under time dependent ROC curve (AUC) in the presence of censored data, with or without competing risks. Confidence intervals of AUCs and tests for comparing AUCs of two rival markers measured on the same subjects can be computed, using the iid-representation of the AUC estimator. Plot functions for time-dependent ROC curves and AUC curves are provided. Time-dependent Positive Predictive Values (PPV) and Negative Predictive Values (NPV) can also be computed.
Author: Paul Blanche
Maintainer: Paul Blanche

Diff between timeROC versions 0.2 dated 2013-05-27 and 0.3 dated 2015-03-24

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Package secr updated to version 2.9.4 with previous version 2.9.3 dated 2015-01-11

Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially distributed animal population sampled with an array of passive detectors, such as traps, or by searching polygons or transects. Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.
Author: Murray Efford
Maintainer: Murray Efford

Diff between secr versions 2.9.3 dated 2015-01-11 and 2.9.4 dated 2015-03-24

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New package searchable with initial version 0.1.2
Package: searchable
Type: Package
Title: Make R Objects Searchable by Matching Names Based on Case (in)Sensitivity, Regular Expressions, ...
Version: 0.1.2
Date: 2015-03-23
Author: "DecisionPatterns [aut, cre]"
Maintainer: Christopher Brown
Description: Provides functionality for searching named vectors and lists more configurable. The packages uses 'stringr'-style match modifiers to allow for matching by case (in)sensitivity, regular expressions or fixed expression. It also allows searching through values rather than names. This functionality facilitates creating dictionary and thesaurus like structures.
Depends: R (>= 3.0.2)
Imports: methods, stringr (>= 0.6.2)
Suggests: testthat, magrittr
License: GPL-2
URL: https://github.com/decisionpatterns/searchable
BugReports: https://github.com/decisionpatterns/searchable/issues
Collate: 'Class-searchable.R' 'extract.R' 'invert.R' 'is.string.R' 'match-modifiers.R' 'reverse.lookup.R' 'searchable-package.R' 'zzz.R'
Packaged: 2015-03-24 09:48:59 UTC; cbrown
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-25 00:16:06

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New package radiant with initial version 0.1.83
Package: radiant
Title: Business Analytics using R and Shiny
Version: 0.1.83
Date: 2015-3-24
Authors@R: person("Vincent", "Nijs", , "radiant@rady.ucsd.edu", c("aut", "cre"))
Description: A platform-independent browser-based interface for business analytics in R, based on the Shiny package.
Depends: R (>= 3.1.0), lubridate (>= 1.3.3), ggplot2 (>= 1.0.0), dplyr (>= 0.4.1), magrittr (>= 1.5)
Imports: car (>= 2.0.22), MASS (>= 7.3), gridExtra (>= 0.9.1), AlgDesign (>= 1.1.7.3), GPArotation (>= 2014.11.1), psych (>= 1.4.8.11), wordcloud (>= 2.5), markdown (>= 0.7.4), knitr (>= 1.8), ggdendro (>= 0.1.15), broom (>= 0.3.6), tidyr (>= 0.2.0), pryr (>= 0.1), shiny (>= 0.11.1), shinyAce (>= 0.1.0)
Suggests: rmarkdown (>= 0.4.2), ggvis (>= 0.4), testthat (>= 0.9.1)
URL: https://github.com/vnijs/radiant, http://vnijs.github.io/radiant/
BugReports: https://github.com/vnijs/radiant/issues
License: AGPL-3 | file LICENSE
LazyData: true
Packaged: 2015-03-24 18:22:29 UTC; vnijs
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs
NeedsCompilation: no
X-CRAN-Comment: Archived on 2015-03-24 for policy violation.
Repository: CRAN
Date/Publication: 2015-03-25 00:18:56

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New package internetarchive with initial version 0.1.2
Package: internetarchive
Type: Package
Title: An API Client for the Internet Archive
Description: Search the Internet Archive, retrieve metadata, and download files.
Version: 0.1.2
Authors@R: c(person("Lincoln", "Mullen", role = c("aut", "cre"), email = "lincoln@lincolnmullen.com"))
License: MIT + file LICENSE
LazyData: TRUE
URL: https://github.com/ropensci/internetarchive
BugReports: https://github.com/ropensci/internetarchive/issues
Depends: R (>= 3.1.0)
Imports: httr (>= 0.6.1), jsonlite (>= 0.9.14), dplyr (>= 0.4.1)
Suggests: knitr, testthat
VignetteBuilder: knitr
Packaged: 2015-03-24 22:17:51 UTC; lmullen
Author: Lincoln Mullen [aut, cre]
Maintainer: Lincoln Mullen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-25 00:19:59

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Package BayesGESM updated to version 1.3 with previous version 1.2 dated 2015-01-09

Title: Bayesian Analysis of Generalized Elliptical Semi-Parametric Models and Flexible Measurement Error Models
Description: It allows to perform the statistical inference based on the Bayesian approach for regression models under the assumption that independent additive errors follow normal, Student-t, slash, contaminated normal, Laplace or symmetric hyperbolic distributions, i.e., additive errors follow a scale mixtures of normal distributions. The regression models considered in this package are: (i) Generalized elliptical semi-parametric models, where both location and dispersion parameters of the response variable distribution include non-parametric additive components described by using B-splines; and (ii) Flexible measurement error models, which admit explanatory variables with and without measurement additive errors as well as the presence of nonlinear effects that are approximated by using B-splines.
Author: Luz Marina Rondon and Heleno Bolfarine
Maintainer: Luz Marina Rondon

Diff between BayesGESM versions 1.2 dated 2015-01-09 and 1.3 dated 2015-03-24

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 13 files changed, 437 insertions(+), 285 deletions(-)

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New package trend with initial version 0.0.1
Package: trend
Version: 0.0.1
Date: 2015-03-23
Title: Non-Parametric Trend Tests and Change-Point Detection
Author: Thorsten Pohlert
Maintainer: Thorsten Pohlert
Depends: R (>= 2.12.0)
Description: The analysis of environmental data often requires the detection of trends and change-points. This package provides the Mann-Kendall Trend Test, seasonal Mann-Kendall Test, correlated seasonal Mann-Kendall Test, partial Mann-Kendall Trend test, (Seasonal) Sen's slope, partial correlation trend test and change-point test after Pettitt.
License: GPL-3
ZipData: yes
NeedsCompilation: yes
Suggests: Kendall, zyp
Packaged: 2015-03-24 13:04:34 UTC; thorpohl
Repository: CRAN
Date/Publication: 2015-03-24 18:20:23

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Package rscala updated to version 1.0.4 with previous version 1.0.2 dated 2015-03-08

Title: Bi-Directional Interface Between R and Scala with Callbacks
Description: The Scala interpreter is embedded in R and callbacks to R from the embedded interpreter are supported. Conversely, the R interpreter is embedded in Scala. Scala versions 2.10 and 2.11 are supported.
Author: David B. Dahl [aut, cre], Scala developers [ctb] (see http://scala-lang.org/)
Maintainer: David B. Dahl

Diff between rscala versions 1.0.2 dated 2015-03-08 and 1.0.4 dated 2015-03-24

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 rscala-1.0.4/rscala/R/common.R                         |    5 
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New package rgexf with initial version 0.15.3
Package: rgexf
Type: Package
Encoding: UTF-8
Title: Build, Import and Export GEXF Graph Files
Version: 0.15.3
Date: 2015-03-24
Author: George Vega Yon [aut], Jorge Fábrega Lacoa [ctb], Joshua B. Kunst [ctb]
Maintainer: George Vega Yon
Description: Create, read and write GEXF (Graph Exchange XML Format) graph files (used in Gephi and others). Using the XML package, it allows the user to easily build/read graph files including attributes, GEXF viz attributes (such as color, size, and position), network dynamics (for both edges and nodes) and edge weighting. Users can build/handle graphs element-by-element or massively through data-frames, visualize the graph on a web browser through "sigmajs" (a javascript library) and interact with the igraph package.
URL: http://bitbucket.org/gvegayon/rgexf, http://www.ggvega.com
Depends: XML, Rook, igraph
License: GPL (>= 3)
LazyLoad: yes
Packaged: 2015-03-24 15:40:34 UTC; george
NeedsCompilation: yes
X-CRAN-History: Archived on 2014-12-22 as maintainer address bounced.
Repository: CRAN
Date/Publication: 2015-03-24 18:27:01

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Package readstata13 updated to version 0.6.1 with previous version 0.6 dated 2015-03-22

Title: Import Stata 13 Data Files
Description: Function to read and write the Stata 13 file format.
Author: Jan Marvin Garbuszus [aut], Sebastian Jeworutzki [aut, cre], R Core Team [cph]
Maintainer: Sebastian Jeworutzki

Diff between readstata13 versions 0.6 dated 2015-03-22 and 0.6.1 dated 2015-03-24

 CHANGELOG              |    3 +++
 DESCRIPTION            |    7 ++++---
 MD5                    |    8 ++++----
 README.md              |    8 +++++---
 src/rcpp_readstata.cpp |   40 ++++++++++++++++++++--------------------
 5 files changed, 36 insertions(+), 30 deletions(-)

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Package mapfit updated to version 0.9.7 with previous version 0.9.6 dated 2015-03-19

Title: A Tool for PH/MAP Parameter Estimation
Description: Estimation methods for phase-type distribution (PH) and Markovian arrival process (MAP) from empirical data (point and grouped data) and density function.
Author: Hiroyuki Okamura
Maintainer: Hiroyuki Okamura

Diff between mapfit versions 0.9.6 dated 2015-03-19 and 0.9.7 dated 2015-03-24

 DESCRIPTION                       |   12 ++++++------
 MD5                               |   30 +++++++++++++++---------------
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 man/ph.moment-method.Rd           |    2 +-
 man/phfit.3mom.Rd                 |    2 +-
 src/mexp/include/mexp.hh          |    2 ++
 src/mexp/src/mexp_unif_thread.cc  |   10 +++++++++-
 src/mexp/src/mexpi_unif_thread.cc |    2 +-
 16 files changed, 63 insertions(+), 51 deletions(-)

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Package fishmove updated to version 0.3-1 with previous version 0.2-1 dated 2014-01-15

Title: Prediction of Fish Movement Parameters
Description: Functions to predict fish movement parameters plotting leptokurtic fish dispersal kernels (see Radinger and Wolter, 2014: Patterns and predictors of fish dispersal in rivers. Fish and Fisheries. 15:456-473.)
Author: Johannes Radinger
Maintainer: Johannes Radinger

Diff between fishmove versions 0.2-1 dated 2014-01-15 and 0.3-1 dated 2015-03-24

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 14 files changed, 44 insertions(+), 41 deletions(-)

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Package radiant (with last version 0.1.75) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-03-18 0.1.75
2015-03-16 0.1.71

Permanent link
Package assertive updated to version 0.2-4 with previous version 0.2-1 dated 2015-02-04

Title: Readable Check Functions to Ensure Code Integrity
Description: Lots of is_* functions to check the state of your variables, and assert_* functions to throw errors if they aren't in the right form.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton

Diff between assertive versions 0.2-1 dated 2015-02-04 and 0.2-4 dated 2015-03-24

 assertive-0.2-1/assertive/man/is_S4.Rd                         |only
 assertive-0.2-1/assertive/man/parenthesise.Rd                  |only
 assertive-0.2-4/assertive/DESCRIPTION                          |   13 
 assertive-0.2-4/assertive/MD5                                  |  140 -
 assertive-0.2-4/assertive/NAMESPACE                            |   23 
 assertive-0.2-4/assertive/NEWS                                 |    5 
 assertive-0.2-4/assertive/R/assert-has.R                       |   24 
 assertive-0.2-4/assertive/R/assert-is-empty-scalar.R           |   21 
 assertive-0.2-4/assertive/R/assert-is-file.R                   |   28 
 assertive-0.2-4/assertive/R/assert-is-in-range.R               |   44 
 assertive-0.2-4/assertive/R/assert-is-na-nan-null.R            |   28 
 assertive-0.2-4/assertive/R/assert-is-other.R                  |   26 
 assertive-0.2-4/assertive/R/assert-is-real-imaginary.R         |   24 
 assertive-0.2-4/assertive/R/assert-is-reflection.R             |   40 
 assertive-0.2-4/assertive/R/assert-is-set.R                    |only
 assertive-0.2-4/assertive/R/assert-is-string-uk.R              |  154 -
 assertive-0.2-4/assertive/R/assert-is-string-us.R              |    8 
 assertive-0.2-4/assertive/R/assert-is-string.R                 |   52 
 assertive-0.2-4/assertive/R/assert-is-time.R                   |    8 
 assertive-0.2-4/assertive/R/assert-is-true-false.R             |    8 
 assertive-0.2-4/assertive/R/assert-is-type.R                   |   16 
 assertive-0.2-4/assertive/R/assert-r-has-capability.R          |  271 +-
 assertive-0.2-4/assertive/R/internal.R                         |   23 
 assertive-0.2-4/assertive/R/is-connection.R                    |   20 
 assertive-0.2-4/assertive/R/is-empty-scalar.R                  |  428 +--
 assertive-0.2-4/assertive/R/is-file.R                          |    2 
 assertive-0.2-4/assertive/R/is-na-nan-null.R                   |    2 
 assertive-0.2-4/assertive/R/is-other.R                         |  577 ++--
 assertive-0.2-4/assertive/R/is-real-imaginary.R                |   17 
 assertive-0.2-4/assertive/R/is-reflection.R                    |   66 
 assertive-0.2-4/assertive/R/is-set.R                           |only
 assertive-0.2-4/assertive/R/is-string-us.R                     |  284 +-
 assertive-0.2-4/assertive/R/is-string.R                        | 1314 +++++-----
 assertive-0.2-4/assertive/R/is-true-false.R                    |  194 -
 assertive-0.2-4/assertive/R/is-type.R                          |   14 
 assertive-0.2-4/assertive/R/r-has-capability.R                 |  567 ++--
 assertive-0.2-4/assertive/R/utils.R                            |   49 
 assertive-0.2-4/assertive/R/zzz.R                              |    2 
 assertive-0.2-4/assertive/README.md                            |only
 assertive-0.2-4/assertive/build                                |only
 assertive-0.2-4/assertive/inst/doc                             |only
 assertive-0.2-4/assertive/inst/po                              |only
 assertive-0.2-4/assertive/inst/tests/test-has.R                |    6 
 assertive-0.2-4/assertive/inst/tests/test-is-reflection.R      |   14 
 assertive-0.2-4/assertive/inst/tests/test-is-string.R          |    4 
 assertive-0.2-4/assertive/inst/tests/test-is-type.R            |    8 
 assertive-0.2-4/assertive/inst/tests/test-r-has-capabilities.R |    2 
 assertive-0.2-4/assertive/man/bapply.Rd                        |    2 
 assertive-0.2-4/assertive/man/cause.Rd                         |    2 
 assertive-0.2-4/assertive/man/false.Rd                         |    2 
 assertive-0.2-4/assertive/man/is_connection.Rd                 |    3 
 assertive-0.2-4/assertive/man/is_email_address.Rd              |   10 
 assertive-0.2-4/assertive/man/is_empty.Rd                      |   12 
 assertive-0.2-4/assertive/man/is_existing.Rd                   |    2 
 assertive-0.2-4/assertive/man/is_hex_color.Rd                  |   10 
 assertive-0.2-4/assertive/man/is_null.Rd                       |    3 
 assertive-0.2-4/assertive/man/is_r.Rd                          |   26 
 assertive-0.2-4/assertive/man/is_real.Rd                       |   22 
 assertive-0.2-4/assertive/man/is_s4.Rd                         |only
 assertive-0.2-4/assertive/man/is_set_equal.Rd                  |only
 assertive-0.2-4/assertive/man/is_true.Rd                       |    4 
 assertive-0.2-4/assertive/man/is_valid_variable_name.Rd        |    4 
 assertive-0.2-4/assertive/man/is_whole_number.Rd               |    5 
 assertive-0.2-4/assertive/man/is_windows.Rd                    |   15 
 assertive-0.2-4/assertive/man/na.Rd                            |    2 
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 71 files changed, 2479 insertions(+), 2176 deletions(-)

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New package sspse with initial version 0.5
Package: sspse
Type: Package
Version: 0.5
Date: 2015-03-20
Title: Estimating Hidden Population Size using Respondent Driven Sampling Data
Authors@R: c( person("Mark S.", "Handcock", role=c("aut","cre","cph"), email="handcock@stat.ucla.edu"), person("Krista J.", "Gile", role=c("aut","cph"), email="gile@math.umass.edu"))
Maintainer: Mark S. Handcock
Depends: parallel
Suggests: network, testthat
Description: An integrated set of tools to estimate the size of a networked population based on respondent-driven sampling data. The package is part of the "RDS Analyst" suite of packages for the analysis of respondent-driven sampling data.
License: GPL-3 + file LICENSE
URL: http://www.hpmrg.org
Imports: coda
Packaged: 2015-03-23 23:47:40 UTC; handcock
Author: Mark S. Handcock [aut, cre, cph], Krista J. Gile [aut, cph]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-03-24 07:25:05

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New package rtable with initial version 0.1.0
Package: rtable
Type: Package
Title: Tabular Reporting Functions
Description: Provides tabular reporting functionalities to work with 'ReporteRs' package: 'as.FlexTable' methods are available for 'ftable' and 'xtable' objects, function 'FlexPivot' is producing a pivot table and 'freqtable' a percentage table, a 'knitr' print method and a 'shiny' render function are provided for 'FlexTable' objects.
Version: 0.1.0
Date: 2015-03-23
Authors@R: c( person("David", "Gohel", role = c("aut", "cre"), email = "david.gohel@lysis-consultants.fr") )
Author: David Gohel [aut, cre]
Maintainer: David Gohel
License: GPL-3
Depends: xtable, ReporteRs (>= 0.7.8)
Imports: knitr, tidyr, shiny
Suggests: dplyr
URL: http://davidgohel.github.io/tabular/index.html
BugReports: https://github.com/davidgohel/rtable/issues
Packaged: 2015-03-23 20:42:08 UTC; davidgohel
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-24 07:21:47

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Package RoughSets updated to version 1.2-1 with previous version 1.2-0 dated 2015-03-19

Title: Data Analysis Using Rough Set and Fuzzy Rough Set Theories
Description: Implementations of algorithms for data analysis based on the rough set theory (RST) and the fuzzy rough set theory (FRST). We not only provide implementations for the basic concepts of RST and FRST but also popular algorithms that derive from those theories. The methods included in the package can be divided into several categories based on their functionality: discretization, feature selection, instance selection, rule induction and classification based on nearest neighbors. RST was introduced by Zdzisław Pawlak in 1982 as a sophisticated mathematical tool based on indiscernibility relations to model and process imprecise or incomplete information. It works on symbolic-valued datasets for tackling the data analysis problems. By using the indiscernibility relation for objects/instances, RST does not require additional parameters to analyze the data. FRST is an extension of RST. The FRST combines concepts of vagueness and indiscernibility that are expressed with fuzzy sets (as proposed by Zadeh, in 1965) and RST.
Author: Lala Septem Riza [aut], Andrzej Janusz [aut], Dominik Ślęzak [ctb], Chris Cornelis [ctb], Francisco Herrera [ctb], Jose Manuel Benitez [ctb], Christoph Bergmeir [ctb, cre], Sebastian Stawicki [ctb]
Maintainer: Christoph Bergmeir

Diff between RoughSets versions 1.2-0 dated 2015-03-19 and 1.2-1 dated 2015-03-24

 DESCRIPTION                                  |    8 
 MD5                                          |  234 -
 R/BasicFuzzyRoughSets.R                      | 3344 +++++++++++++--------------
 R/BasicRoughSets.OtherFuncCollections.R      | 2596 ++++++++++----------
 R/BasicRoughSets.R                           |  804 +++---
 R/Discretization.OtherFuncCollections.R      |  582 ++--
 R/Discretization.R                           |    2 
 R/FeatureSelection.OtherFuncCollections.R    | 1872 +++++++--------
 R/FeatureSelection.R                         | 3164 ++++++++++++-------------
 R/FuzzyRoughSets-introduction.R              |  274 +-
 R/IOFunctions.R                              | 1660 ++++++-------
 R/InstanceSelection.OtherFuncCollections.R   |  126 -
 R/InstanceSelection.R                        |  658 ++---
 R/MissingValue.R                             |  804 +++---
 R/NearestNeigbour.OtherFuncCollections.R     |  480 +--
 R/NearestNeigbour.R                          |  674 ++---
 R/RcppExports.R                              |   22 
 R/RoughSets-introduction.R                   |  232 -
 R/RoughSets-package.R                        | 1086 ++++----
 R/RuleInduction.OtherFuncCollections.R       |  950 +++----
 R/RuleInduction.R                            | 2102 ++++++++--------
 demo/BasicConcept.FRST.R                     |   94 
 demo/BasicConcept.RST.R                      |   50 
 demo/D.discretize.equal.intervals.RST.R      |   28 
 demo/D.discretize.quantiles.RST.R            |   28 
 demo/D.global.discernibility.heuristic.RST.R |   28 
 demo/D.local.discernibility.matrix.RST.R     |   26 
 demo/D.max.discernibility.matrix.RST.R       |   22 
 demo/DiscernibilityMatrix.FRST.R             |   56 
 demo/DiscernibilityMatrix.RST.R              |   22 
 demo/FRNN.O.iris.R                           |   66 
 demo/FRNN.iris.R                             |   76 
 demo/FS.QuickReduct.FRST.Ex1.R               |  112 
 demo/FS.QuickReduct.FRST.Ex2.R               |  102 
 demo/FS.QuickReduct.FRST.Ex3.R               |  102 
 demo/FS.QuickReduct.FRST.Ex4.R               |  108 
 demo/FS.QuickReduct.FRST.Ex5.R               |  114 
 demo/FS.QuickReduct.RST.R                    |   20 
 demo/FS.greedy.heuristic.reduct.RST.R        |   28 
 demo/FS.greedy.heuristic.superreduct.RST.R   |   28 
 demo/FS.nearOpt.fvprs.FRST.R                 |   18 
 demo/FS.permutation.heuristic.reduct.RST.R   |   28 
 demo/GettingStarted.A.R                      |  206 -
 demo/GettingStarted.B.R                      |  272 +-
 demo/IS.FRIS.FRST.R                          |   38 
 demo/IS.FRPS.FRST.R                          |   30 
 demo/MV.simpleData.R                         |   60 
 demo/POSNN.iris.R                            |   64 
 demo/RI.classification.FRST.R                |   62 
 demo/RI.indiscernibilityBasedRules.RST.R     |   38 
 demo/RI.regression.FRST.R                    |   38 
 demo/SimulationDataAnalysisWine.R            |  296 +-
 man/A.Introduction-RoughSets.Rd              |  202 -
 man/B.Introduction-FuzzyRoughSets.Rd         |  246 -
 man/BC.IND.relation.FRST.Rd                  |  634 ++---
 man/BC.IND.relation.RST.Rd                   |  132 -
 man/BC.LU.approximation.FRST.Rd              |  796 +++---
 man/BC.LU.approximation.RST.Rd               |  116 
 man/BC.discernibility.mat.FRST.Rd            |  434 +--
 man/BC.discernibility.mat.RST.Rd             |  132 -
 man/BC.positive.reg.FRST.Rd                  |  224 -
 man/BC.positive.reg.RST.Rd                   |  122 
 man/C.FRNN.FRST.Rd                           |  270 +-
 man/C.FRNN.O.FRST.Rd                         |  166 -
 man/C.POSNN.FRST.Rd                          |  162 -
 man/D.discretization.RST.Rd                  |  164 -
 man/D.discretize.equal.intervals.RST.Rd      |  110 
 man/D.discretize.quantiles.RST.Rd            |  112 
 man/D.global.discernibility.heuristic.RST.Rd |  160 -
 man/D.local.discernibility.matrix.RST.Rd     |  146 -
 man/D.max.discernibility.matrix.RST.Rd       |  150 -
 man/FS.DAAR.heuristic.RST.Rd                 |  192 -
 man/FS.all.reducts.computation.Rd            |  132 -
 man/FS.feature.subset.computation.Rd         |  142 -
 man/FS.greedy.heuristic.reduct.RST.Rd        |  212 -
 man/FS.greedy.heuristic.superreduct.RST.Rd   |  148 -
 man/FS.nearOpt.fvprs.FRST.Rd                 |  150 -
 man/FS.one.reduct.computation.Rd             |  132 -
 man/FS.permutation.heuristic.reduct.RST.Rd   |  158 -
 man/FS.quickreduct.FRST.Rd                   |  582 ++--
 man/FS.quickreduct.RST.Rd                    |  136 -
 man/FS.reduct.computation.Rd                 |  140 -
 man/IS.FRIS.FRST.Rd                          |  168 -
 man/IS.FRPS.FRST.Rd                          |  152 -
 man/MV.conceptClosestFit.Rd                  |  100 
 man/MV.deletionCases.Rd                      |   90 
 man/MV.globalClosestFit.Rd                   |  108 
 man/MV.missingValueCompletion.Rd             |  120 
 man/MV.mostCommonVal.Rd                      |   90 
 man/MV.mostCommonValResConcept.Rd            |   90 
 man/RI.AQRules.RST.Rd                        |  148 -
 man/RI.CN2Rules.RST.Rd                       |  138 -
 man/RI.GFRS.FRST.Rd                          |  174 -
 man/RI.LEM2Rules.RST.Rd                      |  134 -
 man/RI.hybridFS.FRST.Rd                      |  144 -
 man/RI.indiscernibilityBasedRules.RST.Rd     |  138 -
 man/RoughSetData.Rd                          |  260 +-
 man/RoughSets-package.Rd                     | 1054 ++++----
 man/SF.applyDecTable.Rd                      |  222 -
 man/SF.asDecisionTable.Rd                    |  140 -
 man/SF.asFeatureSubset.Rd                    |  104 
 man/SF.read.DecisionTable.Rd                 |   98 
 man/X.entropy.Rd                             |   50 
 man/X.gini.Rd                                |   52 
 man/X.laplace.Rd                             |   48 
 man/X.nOfConflicts.Rd                        |   42 
 man/X.ruleStrength.Rd                        |   50 
 man/X.rulesCounting.Rd                       |   50 
 man/predict.RuleSetFRST.Rd                   |  136 -
 man/predict.RuleSetRST.Rd                    |  182 -
 man/print.FeatureSubset.Rd                   |   66 
 man/print.RuleSetRST.Rd                      |   68 
 man/summary.IndiscernibilityRelation.Rd      |   92 
 man/summary.LowerUpperApproximation.Rd       |   80 
 man/summary.PositiveRegion.Rd                |   82 
 man/summary.RuleSetFRST.Rd                   |  120 
 man/summary.RuleSetRST.Rd                    |   88 
 src/discretization.cc                        |  160 -
 118 files changed, 17787 insertions(+), 17787 deletions(-)

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Package RDS updated to version 0.7-1 with previous version 0.7 dated 2015-01-20

Title: Respondent-Driven Sampling
Description: Provides functionality for carrying out estimation with data collected using Respondent-Driven Sampling. This includes Heckathorn's RDS-I and RDS-II estimators as well as Gile's Sequential Sampling estimator.
Author: Mark S. Handcock [aut, cre], Krista J. Gile [aut], Ian E. Fellows [aut], W. Whipple Neely [aut]
Maintainer: Mark S. Handcock

Diff between RDS versions 0.7 dated 2015-01-20 and 0.7-1 dated 2015-03-24

 DESCRIPTION                    |   14 -
 MD5                            |   36 +-
 R/LRT.trend.R                  |   44 ++-
 R/RDS.compare.proportions.R    |   11 
 R/bgk_kde.R                    |only
 R/bootstrap-intervals.R        |    2 
 R/homophily.R                  |    2 
 R/llmeC.R                      |  530 ++++++++++++++---------------------------
 R/me.impute.R                  |  193 ++++++--------
 R/rds.data.frame-plots.R       |    4 
 man/LRT.value.trend.Rd         |    2 
 man/RDS.bootstrap.intervals.Rd |    2 
 man/RDS.compare.proportions.Rd |    2 
 man/homophily.estimates.Rd     |    2 
 man/impute.degree.Rd           |   45 ++-
 man/plot.rds.data.frame.Rd     |    2 
 man/reingold.tilford.plot.Rd   |    2 
 src/dpoilog.c                  |only
 src/llmeC.c                    |  114 ++++----
 src/llmeC.h                    |    9 
 20 files changed, 450 insertions(+), 566 deletions(-)

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Package rcbalance updated to version 1.4 with previous version 1.3 dated 2015-03-13

Title: Large, Sparse Optimal Matching with Refined Covariate Balance
Description: Tools for large, sparse optimal matching of treated units and control units in observational studies. Provisions are made for refined covariate balance constraints, which include fine and near-fine balance as special cases. Matches are optimal in the sense that they are computed as solutions to network optimization problems rather than greedy algorithms.
Author: Samuel D. Pimentel
Maintainer: Samuel D. Pimentel

Diff between rcbalance versions 1.3 dated 2015-03-13 and 1.4 dated 2015-03-24

 DESCRIPTION   |    6 +++---
 MD5           |    4 ++--
 R/rcbalance.R |    4 +++-
 3 files changed, 8 insertions(+), 6 deletions(-)

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Package jomo updated to version 0.2-0 with previous version 0.1-2 dated 2015-01-07

Title: Multilevel Joint Modelling Multiple Imputation
Description: Building on Schafer's package pan and on the standalone program REALCOM, jomo is a package for multilevel joint modelling multiple imputation. Binary and categorical variables are handled through latent normal variables and algorithms for cluster-specific covariance matrices are introduced.
Author: Matteo Quartagno, James Carpenter
Maintainer: Matteo Quartagno

Diff between jomo versions 0.1-2 dated 2015-01-07 and 0.2-0 dated 2015-03-24

 jomo-0.1-2/jomo/src/rnglib.c         |only
 jomo-0.1-2/jomo/src/rnglib.h         |only
 jomo-0.2-0/jomo/DESCRIPTION          |    8 +-
 jomo-0.2-0/jomo/MD5                  |   50 ++++++++----------
 jomo-0.2-0/jomo/NAMESPACE            |    2 
 jomo-0.2-0/jomo/R/jomo1rancathr.R    |    2 
 jomo-0.2-0/jomo/inst/CITATION        |    3 -
 jomo-0.2-0/jomo/man/jomo1cat.Rd      |    2 
 jomo-0.2-0/jomo/man/jomo1con.Rd      |    4 -
 jomo-0.2-0/jomo/man/jomo1mix.Rd      |   12 ++--
 jomo-0.2-0/jomo/man/jomo1rancat.Rd   |    2 
 jomo-0.2-0/jomo/man/jomo1rancathr.Rd |    2 
 jomo-0.2-0/jomo/man/jomo1rancon.Rd   |    4 -
 jomo-0.2-0/jomo/man/jomo1ranconhr.Rd |    4 -
 jomo-0.2-0/jomo/man/jomo1ranmix.Rd   |   12 ++--
 jomo-0.2-0/jomo/man/jomo1ranmixhr.Rd |   12 ++--
 jomo-0.2-0/jomo/src/jomo1con.c       |    1 
 jomo-0.2-0/jomo/src/jomo1mix.c       |   95 +++++++++++++++++++++++-----------
 jomo-0.2-0/jomo/src/jomo1mix2.c      |   77 ++++++++++++++++++++--------
 jomo-0.2-0/jomo/src/jomo1rancon.c    |    1 
 jomo-0.2-0/jomo/src/jomo1ranconhf.c  |    1 
 jomo-0.2-0/jomo/src/jomo1ranconhr.c  |    5 -
 jomo-0.2-0/jomo/src/jomo1ranmix.c    |   96 ++++++++++++++++++++++++-----------
 jomo-0.2-0/jomo/src/jomo1ranmix2.c   |   88 +++++++++++++++++++++++---------
 jomo-0.2-0/jomo/src/jomo1ranmixhr.c  |   94 +++++++++++++++++++++-------------
 jomo-0.2-0/jomo/src/pdflib.c         |    9 ++-
 jomo-0.2-0/jomo/src/wishart.c        |    1 
 27 files changed, 379 insertions(+), 208 deletions(-)

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Package goft updated to version 1.1 with previous version 1.0 dated 2013-12-04

Title: Tests of Fit for some Probability Distributions
Description: Tests of fit for the gamma, normal, multivariate normal and generalized Pareto distributions.
Author: Elizabeth Gonzalez-Estrada, Jose A. Villasenor-Alva
Maintainer: Elizabeth Gonzalez-Estrada

Diff between goft versions 1.0 dated 2013-12-04 and 1.1 dated 2015-03-24

 goft-1.0/goft/R/gumbel.R            |only
 goft-1.0/goft/man/gumbel.Rd         |only
 goft-1.1/goft/DESCRIPTION           |   15 +++----
 goft-1.1/goft/MD5                   |   19 +++++----
 goft-1.1/goft/R/gamma.test.R        |only
 goft-1.1/goft/R/mvShapiro.Test.R    |   74 ++++++++++++++++++------------------
 goft-1.1/goft/R/normal.R            |   70 +++++++++++++++++-----------------
 goft-1.1/goft/data                  |only
 goft-1.1/goft/inst                  |only
 goft-1.1/goft/man/gamma.test.Rd     |only
 goft-1.1/goft/man/goats.Rd          |only
 goft-1.1/goft/man/gpd.test.Rd       |    2 
 goft-1.1/goft/man/mvShapiro.Test.Rd |   12 +++--
 goft-1.1/goft/man/normal.Rd         |   11 ++---
 14 files changed, 103 insertions(+), 100 deletions(-)

More information about goft at CRAN
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