Thu, 25 Apr 2019

Package rsimsum updated to version 0.5.2 with previous version 0.5.1 dated 2019-03-15

Title: Analysis of Simulation Studies Including Monte Carlo Error
Description: Summarise results from simulation studies and compute Monte Carlo standard errors of commonly used summary statistics. This package is modelled on the 'simsum' user-written command in 'Stata' (See White I.R., 2010 <http://www.stata-journal.com/article.html?article=st0200>).
Author: Alessandro Gasparini [aut, cre] (<https://orcid.org/0000-0002-8319-7624>), Ian R. White [aut]
Maintainer: Alessandro Gasparini <ag475@leicester.ac.uk>

Diff between rsimsum versions 0.5.1 dated 2019-03-15 and 0.5.2 dated 2019-04-25

 rsimsum-0.5.1/rsimsum/man/figures/README-bar-1.png       |only
 rsimsum-0.5.1/rsimsum/man/figures/README-forest-1.png    |only
 rsimsum-0.5.1/rsimsum/man/figures/README-pattern-1.png   |only
 rsimsum-0.5.2/rsimsum/DESCRIPTION                        |    6 +--
 rsimsum-0.5.2/rsimsum/MD5                                |   29 ++++++---------
 rsimsum-0.5.2/rsimsum/NEWS.md                            |    6 +++
 rsimsum-0.5.2/rsimsum/R/plot-types.R                     |    4 +-
 rsimsum-0.5.2/rsimsum/README.md                          |   15 +++----
 rsimsum-0.5.2/rsimsum/build/partial.rdb                  |binary
 rsimsum-0.5.2/rsimsum/inst/doc/introduction.html         |    4 +-
 rsimsum-0.5.2/rsimsum/inst/doc/plotting.html             |   12 +++---
 rsimsum-0.5.2/rsimsum/inst/doc/relhaz.html               |    4 +-
 rsimsum-0.5.2/rsimsum/inst/doc/rsimsumtidyverse.html     |    4 +-
 rsimsum-0.5.2/rsimsum/man/figures/README-ba-1.png        |binary
 rsimsum-0.5.2/rsimsum/man/figures/README-lolly-1.png     |binary
 rsimsum-0.5.2/rsimsum/man/figures/README-ridgeline-1.png |binary
 rsimsum-0.5.2/rsimsum/man/figures/README-zipper-1.png    |binary
 17 files changed, 43 insertions(+), 41 deletions(-)

More information about rsimsum at CRAN
Permanent link

Package Phase123 updated to version 2.1 with previous version 2.0 dated 2018-11-09

Title: Simulating and Conducting Phase 123 Trials
Description: Contains three simulation functions for implementing the entire Phase 123 trial and the separate Eff-Tox and Phase 3 portions of the trial, which may be beneficial for use on clusters. The functions AssignEffTox() and RandomizeEffTox() assign doses to patient cohorts during phase 12 and Reoptimize() determines the optimal dose to continue with during Phase 3. The functions ReturnMeansAgent() and ReturnMeanControl() gives the true mean survival for the agent doses and control and ReturnOCS() gives the operating characteristics of the design.
Author: Andrew G Chapple
Maintainer: Andrew G Chapple <achapp@lsuhsc.edu>

Diff between Phase123 versions 2.0 dated 2018-11-09 and 2.1 dated 2019-04-25

 DESCRIPTION          |    8 ++++----
 MD5                  |    4 ++--
 src/PHASE123CODE.cpp |    2 +-
 3 files changed, 7 insertions(+), 7 deletions(-)

More information about Phase123 at CRAN
Permanent link

New package tinytest with initial version 0.9.2
Package: tinytest
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
License: GPL-3
Title: Lightweight but Feature Complete Unit Testing Framework
LazyData: no
Type: Package
LazyLoad: yes
Authors@R: c( person("Mark", "van der Loo", role=c("aut","cre"),email="mark.vanderloo@gmail.com"))
Description: Provides a lightweight (zero-dependency) and easy to use unit testing framework. Main features: easily install tests with the package. Test results are treated as data that can be stored and manipulated. Test files are R scripts interspersed with test commands, that can be programmed over. Fully automated build-install-test sequence for packages. Skip tests when not run locally (e.g. on CRAN). Flexible and configurable output printing. Compare computed output with output stored with the package.
Version: 0.9.2
URL: https://github.com/markvanderloo/tinytest
BugReports: https://github.com/markvanderloo/tinytest/issues
Imports: utils
RoxygenNote: 6.1.1
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2019-04-23 14:48:58 UTC; mark
Author: Mark van der Loo [aut, cre]
Repository: CRAN
Date/Publication: 2019-04-25 16:20:04 UTC

More information about tinytest at CRAN
Permanent link

New package mcStats with initial version 0.1.0
Package: mcStats
Title: Visualize Results of Statistical Hypothesis Tests
Version: 0.1.0
Authors@R: c(person("Michael", "Czekanski", email = "mczekanski@middlebury.edu", role = c("aut", "cre")), person("Alex", "Lyford", email = "alyford@middlebury.edu", role = "aut"))
Description: Provides functionality to produce graphs of sampling distributions of test statistics from a variety of common statistical tests. With only a few keystrokes, the user can conduct a hypothesis test and visualize the test statistic and corresponding p-value through the shading of its sampling distribution. Initially created for statistics at Middlebury College.
Depends: R (>= 3.4.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Imports: dplyr, ggplot2, ggthemes, gridExtra, magrittr, tidyr
Suggests: testthat
NeedsCompilation: no
Packaged: 2019-04-25 14:59:34 UTC; michael
Author: Michael Czekanski [aut, cre], Alex Lyford [aut]
Maintainer: Michael Czekanski <mczekanski@middlebury.edu>
Repository: CRAN
Date/Publication: 2019-04-25 16:30:03 UTC

More information about mcStats at CRAN
Permanent link

Package httk updated to version 1.9.2 with previous version 1.9.1 dated 2019-04-17

Title: High-Throughput Toxicokinetics
Description: Functions and data tables for simulation and statistical analysis of chemical toxicokinetics ("TK") as in Pearce et al. (2017) <doi:10.18637/jss.v079.i04>. Chemical-specific in vitro data have been obtained from relatively high throughput experiments. Both physiologically-based ("PBTK") and empirical (e.g., one compartment) "TK" models can be parameterized for several hundred chemicals and multiple species. These models are solved efficiently, often using compiled (C-based) code. A Monte Carlo sampler is included for simulating biological variability (Ring et al., 2017 <doi:10.1016/j.envint.2017.06.004>) and measurement limitations. Calibrated methods are included for predicting tissue:plasma partition coefficients and volume of distribution (Pearce et al., 2017 <doi:10.1007/s10928-017-9548-7>). These functions and data provide a set of tools for in vitro-in vivo extrapolation ("IVIVE") of high throughput screening data (e.g., Tox21, ToxCast) to real-world exposures via reverse dosimetry (also known as "RTK") (Wetmore et al., 2015 <doi:10.1093/toxsci/kfv171>).
Author: John Wambaugh [aut, cre], Robert Pearce [aut], Caroline Ring [aut], Greg Honda [aut], Jimena Davis [ctb], Nisha Sipes [ctb], Barbara Wetmore [ctb], Woodrow Setzer [ctb]
Maintainer: John Wambaugh <wambaugh.john@epa.gov>

Diff between httk versions 1.9.1 dated 2019-04-17 and 1.9.2 dated 2019-04-25

 DESCRIPTION                                                             |    8 
 MD5                                                                     |   78 ++--
 NEWS                                                                    |binary
 R/Parameterize_SteadyState.R                                            |    3 
 R/calc_analytic_css.R                                                   |    4 
 R/calc_mc_css.R                                                         |   49 +--
 R/convert_httk.R                                                        |   19 +
 R/draw_fup_clint.R                                                      |    6 
 R/get_cheminfo.R                                                        |    4 
 R/modelinfo_3compss.R                                                   |    1 
 build/partial.rdb                                                       |binary
 inst/doc/Pearce_2017_partitioning_plots.html                            |    4 
 inst/doc/Ring_2017_supplemental_vignette_age_dist.html                  |    4 
 inst/doc/Ring_2017_supplemental_vignette_globalsensitivityanalysis.html |    4 
 inst/doc/Ring_2017_supplemental_vignette_globalsensitivityplot.html     |    4 
 inst/doc/Ring_2017_supplemental_vignette_heightweight_splines_kde.html  |    4 
 inst/doc/Ring_2017_supplemental_vignette_hematocrit_splines.html        |    4 
 inst/doc/Ring_2017_supplemental_vignette_plot_css95.html                |    4 
 inst/doc/Ring_2017_supplemental_vignette_serumcreat_splines_kde.html    |    4 
 inst/doc/Ring_2017_vignette01_subpopulations.html                       |    4 
 inst/doc/Ring_2017_vignette02_evalmodelsubpop.html                      |    4 
 inst/doc/Ring_2017_vignette03_paper_fig2.html                           |    4 
 inst/doc/Ring_2017_vignette04_paper_fig3.html                           |    4 
 inst/doc/Ring_2017_vignette05b_plothowgatejohnson.html                  |    4 
 inst/doc/Ring_2017_vignette06_aerplotting.html                          |    4 
 inst/doc/Ring_2017_vignette_05a_virtualstudypops.html                   |    4 
 inst/doc/Wambaugh_2018_Figures.html                                     |    4 
 tests/1comp_test.R                                                      |   58 +++
 tests/1comp_test.Rout.save                                              |  157 ++++++----
 tests/3comp_test.R                                                      |   57 +++
 tests/3comp_test.Rout.save                                              |  142 ++++++---
 tests/3compss_test.R                                                    |   50 ++-
 tests/3compss_test.Rout.save                                            |   67 +++-
 tests/adddata_test.Rout.save                                            |   14 
 tests/cheminfo_test.Rout.save                                           |    6 
 tests/ivive_test.R                                                      |   70 ++--
 tests/ivive_test.Rout.save                                              |   81 ++---
 tests/other_tests.Rout.save                                             |   14 
 tests/pbtk_test.R                                                       |   57 +++
 tests/pbtk_test.Rout.save                                               |  133 ++++++--
 40 files changed, 794 insertions(+), 348 deletions(-)

More information about httk at CRAN
Permanent link

New package stcos with initial version 0.1.0
Package: stcos
Type: Package
Title: Space-Time Change of Support
Version: 0.1.0
Date: 2019-04-23
Authors@R: c( person(c("Andrew", "M."), "Raim", email = "andrew.raim@gmail.com", role = c("aut", "cre")), person(c("Scott", "H."), "Holan", role = c("aut", "res")), person(c("Jonathan", "R."), "Bradley", role = c("aut", "res")), person(c("Christopher", "K."), "Wikle", role = c("aut", "res")))
Author: Andrew M. Raim [aut, cre], Scott H. Holan [aut, res], Jonathan R. Bradley [aut, res], Christopher K. Wikle [aut, res]
Maintainer: Andrew M. Raim <andrew.raim@gmail.com>
URL: https://github.com/holans/ST-COS
Description: Spatio-temporal change of support (STCOS) methods are designed for statistical inference on geographic and/or time domains that differ from those on which the data were observed. 'stcos' implements a parsimonious class of Bayesian hierarchical spatio-temporal models for STCOS with Gaussian outcomes introduced by Bradley, Wikle, and Holan <doi:10.1002/sta4.94>.
License: GPL (>= 2)
Imports: R6
Depends: R (>= 3.3), Rcpp, Matrix, sf
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 6.1.1
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
Packaged: 2019-04-23 19:27:38 UTC; araim
Repository: CRAN
Date/Publication: 2019-04-25 16:00:03 UTC

More information about stcos at CRAN
Permanent link

Package spant updated to version 0.13.0 with previous version 0.12.0 dated 2018-11-05

Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data.
Author: Martin Wilson [cre, aut], John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>

Diff between spant versions 0.12.0 dated 2018-11-05 and 0.13.0 dated 2019-04-25

 spant-0.12.0/spant/man/diff.mrs_data.Rd               |only
 spant-0.13.0/spant/DESCRIPTION                        |   10 
 spant-0.13.0/spant/MD5                                |  426 +
 spant-0.13.0/spant/NAMESPACE                          |  371 -
 spant-0.13.0/spant/NEWS.md                            |  191 
 spant-0.13.0/spant/R/amp_scaling.R                    |  374 -
 spant-0.13.0/spant/R/basis_set.R                      |  548 +-
 spant-0.13.0/spant/R/data.R                           |    4 
 spant-0.13.0/spant/R/fit_display.R                    |  585 +-
 spant-0.13.0/spant/R/fitting.R                        | 1094 ++---
 spant-0.13.0/spant/R/fp_corr_td.R                     |  143 
 spant-0.13.0/spant/R/image_reg.R                      |  374 -
 spant-0.13.0/spant/R/interactive_plotting.R           |  332 -
 spant-0.13.0/spant/R/mol_parameters.R                 | 1655 +++----
 spant-0.13.0/spant/R/mrs_data_display.R               | 1049 ++--
 spant-0.13.0/spant/R/mrs_data_io.R                    |  533 +-
 spant-0.13.0/spant/R/mrs_data_proc.R                  | 3840 +++++++++---------
 spant-0.13.0/spant/R/mrs_read_ima.R                   |   62 
 spant-0.13.0/spant/R/mrs_read_list_data.R             |  204 
 spant-0.13.0/spant/R/mrs_read_paravis.R               |  132 
 spant-0.13.0/spant/R/mrs_read_pfile.R                 |  380 -
 spant-0.13.0/spant/R/mrs_read_rda.R                   |  116 
 spant-0.13.0/spant/R/mrs_read_spar_sdat.R             |  350 -
 spant-0.13.0/spant/R/mrs_read_twix.R                  |  573 +-
 spant-0.13.0/spant/R/pulse_sequences.R                | 1068 ++---
 spant-0.13.0/spant/R/pulse_shapes.R                   |   24 
 spant-0.13.0/spant/R/qm_simulation.R                  |  906 ++--
 spant-0.13.0/spant/R/rats.R                           |  290 -
 spant-0.13.0/spant/R/spant.R                          |  284 -
 spant-0.13.0/spant/R/utils.R                          |  693 +--
 spant-0.13.0/spant/R/varpro.R                         |  502 +-
 spant-0.13.0/spant/R/varpro_3_para.R                  |  448 +-
 spant-0.13.0/spant/build/vignette.rds                 |binary
 spant-0.13.0/spant/inst/doc/spant-intro.R             |   80 
 spant-0.13.0/spant/inst/doc/spant-intro.Rmd           |  114 
 spant-0.13.0/spant/inst/doc/spant-intro.html          |  553 +-
 spant-0.13.0/spant/inst/reports/mpress_gaba.Rmd       |   86 
 spant-0.13.0/spant/man/Arg.mrs_data.Rd                |   34 
 spant-0.13.0/spant/man/Conj.mrs_data.Rd               |   34 
 spant-0.13.0/spant/man/Im.mrs_data.Rd                 |   34 
 spant-0.13.0/spant/man/Mod.mrs_data.Rd                |   34 
 spant-0.13.0/spant/man/N.Rd                           |   34 
 spant-0.13.0/spant/man/Nspec.Rd                       |   28 
 spant-0.13.0/spant/man/Re.mrs_data.Rd                 |   34 
 spant-0.13.0/spant/man/acquire.Rd                     |   46 
 spant-0.13.0/spant/man/align.Rd                       |   56 
 spant-0.13.0/spant/man/apodise_xy.Rd                  |   34 
 spant-0.13.0/spant/man/append_dyns.Rd                 |   38 
 spant-0.13.0/spant/man/apply_axes.Rd                  |   60 
 spant-0.13.0/spant/man/apply_mrs.Rd                   |   44 
 spant-0.13.0/spant/man/apply_pvc.Rd                   |   54 
 spant-0.13.0/spant/man/basis2mrs_data.Rd              |   46 
 spant-0.13.0/spant/man/beta2lw.Rd                     |   38 
 spant-0.13.0/spant/man/calc_coil_noise_cor.Rd         |   34 
 spant-0.13.0/spant/man/calc_coil_noise_sd.Rd          |   34 
 spant-0.13.0/spant/man/calc_sd_poly.Rd                |   42 
 spant-0.13.0/spant/man/calc_spec_diff.Rd              |   42 
 spant-0.13.0/spant/man/calc_spec_snr.Rd               |   71 
 spant-0.13.0/spant/man/check_lcm.Rd                   |   22 
 spant-0.13.0/spant/man/check_tqn.Rd                   |   22 
 spant-0.13.0/spant/man/comb_coils.Rd                  |   58 
 spant-0.13.0/spant/man/comb_csv_results.Rd            |   42 
 spant-0.13.0/spant/man/comb_metab_ref.Rd              |   38 
 spant-0.13.0/spant/man/conj.Rd                        |   34 
 spant-0.13.0/spant/man/conv_mrs.Rd                    |   38 
 spant-0.13.0/spant/man/crop_spec.Rd                   |   46 
 spant-0.13.0/spant/man/crop_td_pts.Rd                 |only
 spant-0.13.0/spant/man/def_N.Rd                       |   28 
 spant-0.13.0/spant/man/def_acq_paras.Rd               |   66 
 spant-0.13.0/spant/man/def_fs.Rd                      |   28 
 spant-0.13.0/spant/man/def_ft.Rd                      |   28 
 spant-0.13.0/spant/man/def_ref.Rd                     |   28 
 spant-0.13.0/spant/man/diff_mrs.Rd                    |only
 spant-0.13.0/spant/man/dyns.Rd                        |   34 
 spant-0.13.0/spant/man/ecc.Rd                         |   52 
 spant-0.13.0/spant/man/est_noise_sd.Rd                |   46 
 spant-0.13.0/spant/man/fd2td.Rd                       |   34 
 spant-0.13.0/spant/man/fd_conv_filt.Rd                |only
 spant-0.13.0/spant/man/fit_diags.Rd                   |   38 
 spant-0.13.0/spant/man/fit_mrs.Rd                     |  114 
 spant-0.13.0/spant/man/fit_tab2csv.Rd                 |   36 
 spant-0.13.0/spant/man/fp_phase.Rd                    |   34 
 spant-0.13.0/spant/man/fp_phase_correct.Rd            |   44 
 spant-0.13.0/spant/man/fs.Rd                          |   34 
 spant-0.13.0/spant/man/ft_shift.Rd                    |   34 
 spant-0.13.0/spant/man/ft_shift_mat.Rd                |   38 
 spant-0.13.0/spant/man/gen_F.Rd                       |   42 
 spant-0.13.0/spant/man/gen_F_xy.Rd                    |   42 
 spant-0.13.0/spant/man/get_1h_brain_basis_paras.Rd    |   48 
 spant-0.13.0/spant/man/get_1h_brain_basis_paras_v1.Rd |   48 
 spant-0.13.0/spant/man/get_1h_brain_basis_paras_v2.Rd |   48 
 spant-0.13.0/spant/man/get_acq_paras.Rd               |   34 
 spant-0.13.0/spant/man/get_dyns.Rd                    |   40 
 spant-0.13.0/spant/man/get_even_dyns.Rd               |   34 
 spant-0.13.0/spant/man/get_fh_dyns.Rd                 |   34 
 spant-0.13.0/spant/man/get_fit_map.Rd                 |   32 
 spant-0.13.0/spant/man/get_fp.Rd                      |   34 
 spant-0.13.0/spant/man/get_guassian_pulse.Rd          |   36 
 spant-0.13.0/spant/man/get_metab.Rd                   |   34 
 spant-0.13.0/spant/man/get_mol_names.Rd               |   32 
 spant-0.13.0/spant/man/get_mol_paras.Rd               |   32 
 spant-0.13.0/spant/man/get_odd_dyns.Rd                |   34 
 spant-0.13.0/spant/man/get_ref.Rd                     |   34 
 spant-0.13.0/spant/man/get_seg_ind.Rd                 |   42 
 spant-0.13.0/spant/man/get_sh_dyns.Rd                 |   34 
 spant-0.13.0/spant/man/get_slice.Rd                   |   38 
 spant-0.13.0/spant/man/get_svs_voi.Rd                 |   38 
 spant-0.13.0/spant/man/get_td_amp.Rd                  |   46 
 spant-0.13.0/spant/man/get_uncoupled_mol.Rd           |   54 
 spant-0.13.0/spant/man/get_voi_seg.Rd                 |   38 
 spant-0.13.0/spant/man/get_voxel.Rd                   |   56 
 spant-0.13.0/spant/man/hsvd_filt.Rd                   |   46 
 spant-0.13.0/spant/man/ift_shift.Rd                   |   34 
 spant-0.13.0/spant/man/image.mrs_data.Rd              |   91 
 spant-0.13.0/spant/man/int_spec.Rd                    |   46 
 spant-0.13.0/spant/man/interleave_dyns.Rd             |   34 
 spant-0.13.0/spant/man/inv_even_dyns.Rd               |   34 
 spant-0.13.0/spant/man/inv_odd_dyns.Rd                |   34 
 spant-0.13.0/spant/man/is_fd.Rd                       |   38 
 spant-0.13.0/spant/man/lb.Rd                          |   54 
 spant-0.13.0/spant/man/lw2alpha.Rd                    |   38 
 spant-0.13.0/spant/man/lw2beta.Rd                     |   38 
 spant-0.13.0/spant/man/mat2mrs_data.Rd                |   56 
 spant-0.13.0/spant/man/max_mrs.Rd                     |only
 spant-0.13.0/spant/man/max_mrs_interp.Rd              |only
 spant-0.13.0/spant/man/mean_dyn_blocks.Rd             |   38 
 spant-0.13.0/spant/man/mean_dyn_pairs.Rd              |   34 
 spant-0.13.0/spant/man/mean_dyns.Rd                   |   34 
 spant-0.13.0/spant/man/median_dyns.Rd                 |   34 
 spant-0.13.0/spant/man/mrs_data2basis.Rd              |   42 
 spant-0.13.0/spant/man/mrs_data2mat.Rd                |   38 
 spant-0.13.0/spant/man/mrs_data2vec.Rd                |   56 
 spant-0.13.0/spant/man/mvfftshift.Rd                  |   38 
 spant-0.13.0/spant/man/n2coord.Rd                     |   32 
 spant-0.13.0/spant/man/peak_info.Rd                   |   62 
 spant-0.13.0/spant/man/phase.Rd                       |   42 
 spant-0.13.0/spant/man/plot.fit_result.Rd             |   96 
 spant-0.13.0/spant/man/plot.mrs_data.Rd               |  113 
 spant-0.13.0/spant/man/plot_fit_slice.Rd              |   44 
 spant-0.13.0/spant/man/plot_fit_slice_inter.Rd        |   46 
 spant-0.13.0/spant/man/plot_slice_map.Rd              |   74 
 spant-0.13.0/spant/man/plot_slice_map_inter.Rd        |   70 
 spant-0.13.0/spant/man/plot_voi_overlay.Rd            |   32 
 spant-0.13.0/spant/man/plot_voi_overlay_seg.Rd        |   32 
 spant-0.13.0/spant/man/ppm.Rd                         |   50 
 spant-0.13.0/spant/man/print.fit_result.Rd            |   32 
 spant-0.13.0/spant/man/print.mrs_data.Rd              |   32 
 spant-0.13.0/spant/man/qn_states.Rd                   |   34 
 spant-0.13.0/spant/man/rats.Rd                        |   64 
 spant-0.13.0/spant/man/read_basis.Rd                  |   38 
 spant-0.13.0/spant/man/read_lcm_coord.Rd              |   36 
 spant-0.13.0/spant/man/read_mrs.Rd                    |   77 
 spant-0.13.0/spant/man/read_mrs_dpt.Rd                |   44 
 spant-0.13.0/spant/man/read_mrs_tqn.Rd                |   64 
 spant-0.13.0/spant/man/read_tqn_fit.Rd                |   44 
 spant-0.13.0/spant/man/read_tqn_result.Rd             |   48 
 spant-0.13.0/spant/man/reexports.Rd                   |   33 
 spant-0.13.0/spant/man/rep_array_dim.Rd               |   42 
 spant-0.13.0/spant/man/rep_dyn.Rd                     |   38 
 spant-0.13.0/spant/man/rep_mrs.Rd                     |   56 
 spant-0.13.0/spant/man/resample_voi.Rd                |   38 
 spant-0.13.0/spant/man/rm_dyns.Rd                     |   40 
 spant-0.13.0/spant/man/scale_amp_molal_pvc.Rd         |   50 
 spant-0.13.0/spant/man/scale_amp_molar.Rd             |   50 
 spant-0.13.0/spant/man/scale_amp_ratio.Rd             |   40 
 spant-0.13.0/spant/man/scale_amp_water_ratio.Rd       |   38 
 spant-0.13.0/spant/man/seconds.Rd                     |   34 
 spant-0.13.0/spant/man/seq_cpmg_ideal.Rd              |   50 
 spant-0.13.0/spant/man/seq_mega_press_ideal.Rd        |   68 
 spant-0.13.0/spant/man/seq_press_ideal.Rd             |   50 
 spant-0.13.0/spant/man/seq_pulse_acquire.Rd           |   42 
 spant-0.13.0/spant/man/seq_pulse_acquire_31p.Rd       |   42 
 spant-0.13.0/spant/man/seq_slaser_ideal.Rd            |   56 
 spant-0.13.0/spant/man/seq_spin_echo_ideal.Rd         |   46 
 spant-0.13.0/spant/man/seq_spin_echo_ideal_31p.Rd     |   46 
 spant-0.13.0/spant/man/seq_steam_ideal.Rd             |   50 
 spant-0.13.0/spant/man/set_def_acq_paras.Rd           |   44 
 spant-0.13.0/spant/man/set_lcm_cmd.Rd                 |   28 
 spant-0.13.0/spant/man/set_ref.Rd                     |   32 
 spant-0.13.0/spant/man/set_td_pts.Rd                  |   42 
 spant-0.13.0/spant/man/set_tqn_cmd.Rd                 |   28 
 spant-0.13.0/spant/man/shift.Rd                       |   42 
 spant-0.13.0/spant/man/sim_basis.Rd                   |   64 
 spant-0.13.0/spant/man/sim_basis_1h_brain.Rd          |   62 
 spant-0.13.0/spant/man/sim_basis_1h_brain_press.Rd    |   60 
 spant-0.13.0/spant/man/sim_basis_tqn.Rd               |   56 
 spant-0.13.0/spant/man/sim_brain_1h.Rd                |   70 
 spant-0.13.0/spant/man/sim_mol.Rd                     |   64 
 spant-0.13.0/spant/man/sim_noise.Rd                   |   60 
 spant-0.13.0/spant/man/sim_resonances.Rd              |   70 
 spant-0.13.0/spant/man/spant-package.Rd               |   68 
 spant-0.13.0/spant/man/spant_mpress_drift.Rd          |   28 
 spant-0.13.0/spant/man/spin_sys.Rd                    |   42 
 spant-0.13.0/spant/man/spm_pve2categorical.Rd         |   38 
 spant-0.13.0/spant/man/stackplot.Rd                   |   32 
 spant-0.13.0/spant/man/stackplot.fit_result.Rd        |   92 
 spant-0.13.0/spant/man/stackplot.mrs_data.Rd          |  124 
 spant-0.13.0/spant/man/sum_coils.Rd                   |   34 
 spant-0.13.0/spant/man/sum_dyns.Rd                    |   34 
 spant-0.13.0/spant/man/td2fd.Rd                       |   34 
 spant-0.13.0/spant/man/td_conv_filt.Rd                |   42 
 spant-0.13.0/spant/man/tdsr.Rd                        |   52 
 spant-0.13.0/spant/man/varpro_3_para_opts.Rd          |   88 
 spant-0.13.0/spant/man/varpro_opts.Rd                 |   82 
 spant-0.13.0/spant/man/vec2mrs_data.Rd                |   56 
 spant-0.13.0/spant/man/write_basis.Rd                 |   36 
 spant-0.13.0/spant/man/write_basis_tqn.Rd             |   46 
 spant-0.13.0/spant/man/write_mrs_dpt_v2.Rd            |   42 
 spant-0.13.0/spant/man/write_mrs_lcm_raw.Rd           |   46 
 spant-0.13.0/spant/man/zero_nzoc.Rd                   |   38 
 spant-0.13.0/spant/man/zf.Rd                          |   52 
 spant-0.13.0/spant/man/zf_xy.Rd                       |   40 
 spant-0.13.0/spant/tests/testthat.R                   |    8 
 spant-0.13.0/spant/tests/testthat/test_fitting.R      |   34 
 spant-0.13.0/spant/tests/testthat/test_preproc.R      |    8 
 spant-0.13.0/spant/tests/testthat/test_qm_sim.R       |   10 
 spant-0.13.0/spant/vignettes/spant-intro.Rmd          |  114 
 217 files changed, 13360 insertions(+), 12919 deletions(-)

More information about spant at CRAN
Permanent link

New package RMKL with initial version 1.0
Package: RMKL
Type: Package
Title: Multiple Kernel Learning for Classification or Regression Problems
Version: 1.0
Date: 2019-04-11
Author: Christopher Wilson, Kaiqiao Li
Maintainer: Christopher Wilson <cwilso6@clemson.edu>
Description: Provides R and C++ function that enable the user to conduct multiple kernel learning (MKL) and cross validation for support vector machine (SVM) models. Cross validation can be used to identify kernel shapes and hyperparameter combinations that can be used as candidate kernels for MKL. There are three implementations provided in this package, namely SimpleMKL Alain Rakotomamonjy et. al (2008), Simple and Efficient MKL Xu et. al (2010), and Dual augmented Lagrangian MKL Suzuki and Tomioka (2011) <doi:10.1007/s10994-011-5252-9>. These methods identify the convex combination of candidate kernels to construct an optimal hyperplane.
License: GPL-3
Depends: R (>= 3.5.0)
Imports: Rcpp (>= 1.0.0), caret, kernlab, stats, e1071
LinkingTo: Rcpp, RcppArmadillo
LazyData: true
LazyLoad: yes
Encoding: UTF-8
RoxygenNote: 6.1.1
NeedsCompilation: yes
Packaged: 2019-04-24 14:53:19 UTC; 4468179
Repository: CRAN
Date/Publication: 2019-04-25 15:20:03 UTC

More information about RMKL at CRAN
Permanent link

Package openEBGM updated to version 0.8.2 with previous version 0.8.1 dated 2019-02-28

Title: EBGM Disproportionality Scores for Adverse Event Data Mining
Description: An implementation of DuMouchel's (1999) <doi:10.1080/00031305.1999.10474456> Bayesian data mining method for the market basket problem. Calculates Empirical Bayes Geometric Mean (EBGM) and quantile scores from the posterior distribution using the Gamma-Poisson Shrinker (GPS) model to find unusually large cell counts in large, sparse contingency tables. Can be used to find unusually high reporting rates of adverse events associated with products. In general, can be used to mine any database where the co-occurrence of two variables or items is of interest. Also calculates relative and proportional reporting ratios. Builds on the work of the 'PhViD' package, from which much of the code is derived. Some of the added features include stratification to adjust for confounding variables and data squashing to improve computational efficiency. Now includes an implementation of the EM algorithm for hyperparameter estimation loosely derived from the 'mederrRank' package.
Author: John Ihrie [cre, aut], Travis Canida [aut], Ismaïl Ahmed [ctb] (author of 'PhViD' package (derived code)), Antoine Poncet [ctb] (author of 'PhViD'), Sergio Venturini [ctb] (author of 'mederrRank' package (derived code)), Jessica Myers [ctb] (author of 'mederrRank')
Maintainer: John Ihrie <John.Ihrie@fda.hhs.gov>

Diff between openEBGM versions 0.8.1 dated 2019-02-28 and 0.8.2 dated 2019-04-25

 DESCRIPTION                                   |    6 +-
 MD5                                           |   16 +++----
 NEWS                                          |   24 +++--------
 R/f_transformInput.R                          |    6 +-
 inst/doc/x1_introAndDataPrepVignette.html     |    7 ++-
 inst/doc/x2_rawDataProcessingVignette.html    |    7 ++-
 inst/doc/x3_hyperParameterVignette.html       |   53 +++++++++++++-------------
 inst/doc/x4_posteriorCalculationVignette.html |   13 +++---
 inst/doc/x5_openEBGMObjectVignette.html       |    7 ++-
 9 files changed, 74 insertions(+), 65 deletions(-)

More information about openEBGM at CRAN
Permanent link

Package SparkR updated to version 2.4.2 with previous version 2.4.1 dated 2019-04-04

Title: R Front End for 'Apache Spark'
Description: Provides an R Front end for 'Apache Spark' <https://spark.apache.org>.
Author: Shivaram Venkataraman [aut, cre], Xiangrui Meng [aut], Felix Cheung [aut], The Apache Software Foundation [aut, cph]
Maintainer: Shivaram Venkataraman <shivaram@cs.berkeley.edu>

Diff between SparkR versions 2.4.1 dated 2019-04-04 and 2.4.2 dated 2019-04-25

 DESCRIPTION                    |    6 ++--
 MD5                            |    6 ++--
 build/vignette.rds             |binary
 inst/doc/sparkr-vignettes.html |   61 +++++++++++++++++++++--------------------
 4 files changed, 38 insertions(+), 35 deletions(-)

More information about SparkR at CRAN
Permanent link

Package geojsonio updated to version 0.7.0 with previous version 0.6.0 dated 2018-03-30

Title: Convert Data from and to 'GeoJSON' or 'TopoJSON'
Description: Convert data to 'GeoJSON' or 'TopoJSON' from various R classes, including vectors, lists, data frames, shape files, and spatial classes. 'geojsonio' does not aim to replace packages like 'sp', 'rgdal', 'rgeos', but rather aims to be a high level client to simplify conversions of data from and to 'GeoJSON' and 'TopoJSON'.
Author: Scott Chamberlain [aut, cre], Andy Teucher [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between geojsonio versions 0.6.0 dated 2018-03-30 and 0.7.0 dated 2019-04-25

 geojsonio-0.6.0/geojsonio/man/geojsonio-deprecated.Rd             |only
 geojsonio-0.6.0/geojsonio/man/lint.Rd                             |only
 geojsonio-0.6.0/geojsonio/man/validate.Rd                         |only
 geojsonio-0.6.0/geojsonio/tests/testthat/test-lint.R              |only
 geojsonio-0.6.0/geojsonio/tests/testthat/test-validate.R          |only
 geojsonio-0.7.0/geojsonio/DESCRIPTION                             |    9 
 geojsonio-0.7.0/geojsonio/LICENSE                                 |    2 
 geojsonio-0.7.0/geojsonio/MD5                                     |   98 +++----
 geojsonio-0.7.0/geojsonio/NAMESPACE                               |   31 --
 geojsonio-0.7.0/geojsonio/NEWS.md                                 |   19 +
 geojsonio-0.7.0/geojsonio/R/as.json.R                             |    4 
 geojsonio-0.7.0/geojsonio/R/geo_topo.R                            |   32 +-
 geojsonio-0.7.0/geojsonio/R/geojson_list.R                        |    4 
 geojsonio-0.7.0/geojsonio/R/geojson_sf.R                          |    4 
 geojsonio-0.7.0/geojsonio/R/geojson_sp.R                          |    5 
 geojsonio-0.7.0/geojsonio/R/geojsonio-package.r                   |   15 -
 geojsonio-0.7.0/geojsonio/R/lint.R                                |  133 ----------
 geojsonio-0.7.0/geojsonio/R/topojson_json.R                       |   12 
 geojsonio-0.7.0/geojsonio/R/topojson_list.R                       |    3 
 geojsonio-0.7.0/geojsonio/R/topojson_read.R                       |   26 +
 geojsonio-0.7.0/geojsonio/R/topojson_write.R                      |  109 ++++----
 geojsonio-0.7.0/geojsonio/R/validate.R                            |  128 ---------
 geojsonio-0.7.0/geojsonio/README.md                               |    7 
 geojsonio-0.7.0/geojsonio/build/vignette.rds                      |binary
 geojsonio-0.7.0/geojsonio/inst/doc/geojsonio_vignette.Rmd         |    2 
 geojsonio-0.7.0/geojsonio/inst/doc/geojsonio_vignette.html        |    4 
 geojsonio-0.7.0/geojsonio/inst/img/unnamed-chunk-23-1.png         |binary
 geojsonio-0.7.0/geojsonio/inst/vign/figure/unnamed-chunk-17-1.png |binary
 geojsonio-0.7.0/geojsonio/inst/vign/geojsonio_vignette.md         |    2 
 geojsonio-0.7.0/geojsonio/man/geo2topo.Rd                         |    9 
 geojsonio-0.7.0/geojsonio/man/geojson_json.Rd                     |    4 
 geojsonio-0.7.0/geojsonio/man/geojson_list.Rd                     |    4 
 geojsonio-0.7.0/geojsonio/man/geojson_sf.Rd                       |    2 
 geojsonio-0.7.0/geojsonio/man/geojson_sp.Rd                       |    5 
 geojsonio-0.7.0/geojsonio/man/geojson_style.Rd                    |    8 
 geojsonio-0.7.0/geojsonio/man/geojsonio-defunct.Rd                |only
 geojsonio-0.7.0/geojsonio/man/geojsonio.Rd                        |    5 
 geojsonio-0.7.0/geojsonio/man/lint-defunct.Rd                     |only
 geojsonio-0.7.0/geojsonio/man/map_leaf.Rd                         |    3 
 geojsonio-0.7.0/geojsonio/man/projections.Rd                      |    4 
 geojsonio-0.7.0/geojsonio/man/topojson_json.Rd                    |   12 
 geojsonio-0.7.0/geojsonio/man/topojson_list.Rd                    |    7 
 geojsonio-0.7.0/geojsonio/man/topojson_read.Rd                    |   17 -
 geojsonio-0.7.0/geojsonio/man/topojson_write.Rd                   |    9 
 geojsonio-0.7.0/geojsonio/man/validate-defunct.Rd                 |only
 geojsonio-0.7.0/geojsonio/tests/testthat/teardown.R               |only
 geojsonio-0.7.0/geojsonio/tests/testthat/test-as.json.R           |    8 
 geojsonio-0.7.0/geojsonio/tests/testthat/test-geo_topo.R          |   36 ++
 geojsonio-0.7.0/geojsonio/tests/testthat/test-geojson_write.R     |    6 
 geojsonio-0.7.0/geojsonio/tests/testthat/test-map_gist.R          |    2 
 geojsonio-0.7.0/geojsonio/tests/testthat/test-sf_classes.R        |   13 
 geojsonio-0.7.0/geojsonio/tests/testthat/test-topojson_json.R     |only
 geojsonio-0.7.0/geojsonio/tests/testthat/test-topojson_read.R     |   42 +--
 geojsonio-0.7.0/geojsonio/tests/testthat/test-topojson_write.R    |   22 +
 geojsonio-0.7.0/geojsonio/vignettes/geojsonio_vignette.Rmd        |    2 
 55 files changed, 371 insertions(+), 498 deletions(-)

More information about geojsonio at CRAN
Permanent link

Package BEDMatrix updated to version 1.5.0 with previous version 1.4.1 dated 2018-08-06

Title: Extract Genotypes from a PLINK .bed File
Description: A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.
Author: Alexander Grueneberg [aut, cre], Lian Lian [ctb], Gustavo de los Campos [ctb]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>

Diff between BEDMatrix versions 1.4.1 dated 2018-08-06 and 1.5.0 dated 2019-04-25

 DESCRIPTION                        |   10 +-
 MD5                                |   14 +--
 NEWS.md                            |    9 ++
 R/BEDMatrix.R                      |   75 +++++++++++++----
 README.md                          |    1 
 man/initialize-BEDMatrix-method.Rd |    9 +-
 src/BEDMatrix.cpp                  |  155 +++++++++++++++++++++----------------
 tests/testthat/test-BEDMatrix.R    |    2 
 8 files changed, 181 insertions(+), 94 deletions(-)

More information about BEDMatrix at CRAN
Permanent link

Package rmumps updated to version 5.1.2-6 with previous version 5.1.2-5 dated 2018-12-18

Title: Wrapper for MUMPS Library
Description: Some basic features of MUMPS (Multifrontal Massively Parallel sparse direct Solver) are wrapped in a class whose methods can be used for sequentially solving a sparse linear system (symmetric or not) with one or many right hand sides (dense or sparse). There is a possibility to do separately symbolic analysis, LU (or LDL^t) factorization and system solving. Third part ordering libraries are included and can be used: PORD, METIS, SCOTCH. MUMPS method was first described in Amestoy et al. (2001) <doi:10.1137/S0895479899358194> and Amestoy et al. (2006) <doi:10.1016/j.parco.2005.07.004>.
Author: Serguei Sokol [aut, cre], Emmanuel Agullo [ctb], Patrick Amestoy [ctb], Maurice Bremond [ctb], Alfredo Buttari [ctb], Philippe Combes [ctb], Marie Durand [ctb], Aurelia Fevre [ctb], Abdou Guermouche [ctb], Guillaume Joslin [ctb], Jacko Koster [ctb], Jean-Yves L'Excellent [ctb], Stephane Pralet [ctb], Chiara Puglisi [ctb], Francois-Henry Rouet [ctb], Wissam Sid-Lakhdar [ctb], Tzvetomila Slavova [ctb], Bora Ucar [ctb], Clement Weisbecker [ctb], Juergen Schulze [ctb], George Karypis [ctb], Douglas C. Schmidt [ctb], Isamu Hasegawa [ctb], Alexander Chemeris [ctb], Makoto Matsumoto [ctb], Takuji Nishimura [ctb], Francois Pellegrini [ctb], David Goudin [ctb], Pascal Henon [ctb], Pierre Ramet [ctb], Sebastien Fourestier [ctb], Jun-Ho Her [ctb], Cedric Chevalier [ctb], Timothy A. Davis [ctb], Iain S. Duff [ctb], John K. Reid [ctb], Richard Stallman [ctb], Samuel Thibault [ctb]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>

Diff between rmumps versions 5.1.2-5 dated 2018-12-18 and 5.1.2-6 dated 2019-04-25

 DESCRIPTION                  |   11 ++++---
 MD5                          |   31 +++++++++++----------
 NAMESPACE                    |   17 ++++-------
 NEWS                         |   11 +++++++
 R/RcppExports.R              |   14 +++++++++
 R/package.R                  |only
 R/zzz.R                      |    4 ++
 inst/include/rmumps.h        |   13 ++++++++
 man/Rmumps.Rd                |    2 +
 man/get_cnst.Rd              |only
 man/rmumps-package.Rd        |    2 -
 src/Makevars                 |    2 -
 src/Makevars.seq             |    2 -
 src/RcppExports.cpp          |   11 +++++++
 src/get_cnst.cpp             |only
 src/rmumps_module.cpp        |   63 ++++++++++++++++++++++++++++++++-----------
 tests/testthat.R             |    4 +-
 tests/testthat/test_rmumps.R |   44 ++++++++++++++++++++++++++++--
 18 files changed, 178 insertions(+), 53 deletions(-)

More information about rmumps at CRAN
Permanent link

Package pedquant updated to version 0.1.1 with previous version 0.1.0 dated 2019-03-15

Title: Public Economic Data and Quantitative Analysis
Description: Provides an interface to access public economic and financial data for economic research and quantitative analysis. The data sources including NBS, FRED, Yahoo Finance, 163 Finance and etc.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>

Diff between pedquant versions 0.1.0 dated 2019-03-15 and 0.1.1 dated 2019-04-25

 DESCRIPTION              |   12 -
 MD5                      |   40 ++---
 NAMESPACE                |    6 
 NEWS.md                  |    6 
 R/condition_helper_fun.R |    7 
 R/ed_nbs.R               |  128 +++++++++++------
 R/md_2bond.R             |    2 
 R/md_stock1_.R           |    7 
 R/md_stock1_163.R        |  169 +++++++++++++---------
 R/md_stock_symbol.R      |   81 +++--------
 R/pq_addti.R             |   19 ++
 R/pq_backtest.R          |  122 +++++++++++++++-
 R/pq_perf.R              |  128 ++++++++++++++++-
 R/pq_plot.R              |  346 ++++++++++++++++++++++++-----------------------
 R/sysdata.rda            |binary
 man/ed_nbs.Rd            |    6 
 man/ed_nbs_subregion.Rd  |    9 -
 man/ed_nbs_symbol.Rd     |    2 
 man/pq_addti.Rd          |    2 
 man/pq_perf.Rd           |    2 
 man/pq_plot.Rd           |   14 -
 21 files changed, 710 insertions(+), 398 deletions(-)

More information about pedquant at CRAN
Permanent link

Package mombf updated to version 2.2.2 with previous version 2.2.1 dated 2019-04-08

Title: Bayesian Model Selection and Averaging for Non-Local and Local Priors
Description: Bayesian model selection and averaging for regression and mixtures for non-local and selected local priors.
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck
Maintainer: David Rossell <rosselldavid@gmail.com>

Diff between mombf versions 2.2.1 dated 2019-04-08 and 2.2.2 dated 2019-04-25

 ChangeLog          |    4 
 DESCRIPTION        |    8 -
 MD5                |   16 +-
 R/testfunction.R   |    5 
 inst/doc/mombf.pdf |binary
 src/cstat.cpp      |  128 +++++++++++++++++----
 src/cstat.h        |    8 +
 src/modelSel.cpp   |  316 +++++++++++++++++++++++++++++++++++++++++------------
 src/modelSel.h     |   10 +
 9 files changed, 386 insertions(+), 109 deletions(-)

More information about mombf at CRAN
Permanent link

Package landscapemetrics updated to version 1.1 with previous version 1.0 dated 2019-03-15

Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in a tidy workflow. 'landscapemetrics' reimplements the most common metrics from 'FRAGSTATS' (<https://www.umass.edu/landeco/research/fragstats/fragstats.html>) and new ones from the current literature on landscape metrics. This package supports 'raster' spatial objects and takes RasterLayer, RasterStacks, RasterBricks or lists of RasterLayer from the 'raster' package as input arguments. It further provides utility functions to visualize patches, select metrics and building blocks to develop new metrics.
Author: Maximillian H.K. Hesselbarth [aut, cre] (<https://orcid.org/0000-0003-1125-9918>), Marco Sciaini [aut] (<https://orcid.org/0000-0002-3042-5435>), Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>), Sebastian Hanss [aut] (<https://orcid.org/0000-0002-3990-4897>), Laura J. Graham [ctb] (Input on package structure), Jeffrey Hollister [ctb] (Input on package structure), Kimberly A. With [ctb] (Input on package structure), Florian Privé [ctb] (Original author of underlying C++ code for get_nearestneighbour() function), Jeremy VanDerWal [ctb] (Original author of underlying C code for get_patches() function), Matt Strimas-Mackey [ctb] (Bugfix in sample_metrics())
Maintainer: Maximillian H.K. Hesselbarth <maximilian.hesselbarth@uni-goettingen.de>

Diff between landscapemetrics versions 1.0 dated 2019-03-15 and 1.1 dated 2019-04-25

 landscapemetrics-1.0/landscapemetrics/R/get_lsm.R                                    |only
 landscapemetrics-1.0/landscapemetrics/man/get_lsm.Rd                                 |only
 landscapemetrics-1.0/landscapemetrics/tests/testthat/test-get-lsm.R                  |only
 landscapemetrics-1.1/landscapemetrics/DESCRIPTION                                    |    8 
 landscapemetrics-1.1/landscapemetrics/MD5                                            |  414 ++--
 landscapemetrics-1.1/landscapemetrics/NAMESPACE                                      |   41 
 landscapemetrics-1.1/landscapemetrics/NEWS.md                                        |   25 
 landscapemetrics-1.1/landscapemetrics/R/calculate_lsm.R                              |  275 +--
 landscapemetrics-1.1/landscapemetrics/R/check_landscape.R                            |  316 +--
 landscapemetrics-1.1/landscapemetrics/R/construct_buffer.R                           |  311 +--
 landscapemetrics-1.1/landscapemetrics/R/extract_lsm.R                                |  763 ++++----
 landscapemetrics-1.1/landscapemetrics/R/get_adjacencies.R                            |  425 +++-
 landscapemetrics-1.1/landscapemetrics/R/get_boundaries.R                             |  330 ++-
 landscapemetrics-1.1/landscapemetrics/R/get_circumscribingcircle.R                   |  278 ++-
 landscapemetrics-1.1/landscapemetrics/R/get_nearestneighbour.R                       |  307 ++-
 landscapemetrics-1.1/landscapemetrics/R/get_patches.R                                |  625 +++---
 landscapemetrics-1.1/landscapemetrics/R/get_unique_values.R                          |  468 ++---
 landscapemetrics-1.1/landscapemetrics/R/list_lsm.R                                   |  316 ++-
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_ai.R                                   |  344 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_area_cv.R                              |  296 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_area_mn.R                              |  298 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_area_sd.R                              |  296 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_ca.R                                   |   10 
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_cai_cv.R                               |  334 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_cai_mn.R                               |  328 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_cai_sd.R                               |  332 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_circle_cv.R                            |  316 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_circle_mn.R                            |  310 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_circle_sd.R                            |  312 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_clumpy.R                               |  386 ++--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_cohesion.R                             |  356 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_contig_cv.R                            |  312 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_contig_mn.R                            |  312 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_contig_sd.R                            |  314 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_core_cv.R                              |  326 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_core_mn.R                              |  320 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_core_sd.R                              |  324 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_cpland.R                               |  354 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_dcad.R                                 |  350 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_dcore_cv.R                             |  332 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_dcore_mn.R                             |  326 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_dcore_sd.R                             |  336 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_division.R                             |  310 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_ed.R                                   |  356 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_enn_cv.R                               |  322 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_enn_mn.R                               |  324 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_enn_sd.R                               |  324 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_frac_cv.R                              |  302 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_frac_mn.R                              |  296 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_frac_sd.R                              |  300 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_gyrate_cv.R                            |  310 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_gyrate_mn.R                            |  308 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_gyrate_sd.R                            |  308 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_iji.R                                  |  350 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_lpi.R                                  |  300 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_lsi.R                                  |  358 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_mesh.R                                 |  316 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_ndca.R                                 |  330 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_nlsi.R                                 |  386 ++--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_np.R                                   |  306 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_pafrac.R                               |  392 ++--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_para_cv.R                              |  296 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_para_mn.R                              |  296 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_para_sd.R                              |  296 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_pd.R                                   |  314 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_pladj.R                                |  298 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_pland.R                                |  288 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_shape_cv.R                             |  302 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_shape_mn.R                             |  302 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_shape_sd.R                             |  302 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_split.R                                |  312 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_tca.R                                  |  322 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_c_te.R                                   |  478 ++---
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_ai.R                                   |  300 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_area_cv.R                              |  294 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_area_mn.R                              |  300 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_area_sd.R                              |  298 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_cai_cv.R                               |  362 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_cai_mn.R                               |  356 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_cai_sd.R                               |  360 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_circle_cv.R                            |  308 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_circle_mn.R                            |  308 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_circle_sd.R                            |  312 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_cohesion.R                             |  328 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_condent.R                              |  353 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_contag.R                               |  356 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_contig_cv.R                            |  314 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_contig_mn.R                            |  312 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_contig_sd.R                            |  314 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_core_cv.R                              |  356 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_core_mn.R                              |  352 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_core_sd.R                              |  354 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_dcad.R                                 |  374 ++--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_dcore_cv.R                             |  362 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_dcore_mn.R                             |  356 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_dcore_sd.R                             |  360 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_division.R                             |  306 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_ed.R                                   |  346 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_enn_cv.R                               |  318 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_enn_mn.R                               |  318 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_enn_sd.R                               |  318 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_ent.R                                  |  288 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_frac_cv.R                              |  302 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_frac_mn.R                              |  300 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_frac_sd.R                              |  300 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_gyrate_cv.R                            |  308 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_gyrate_mn.R                            |  306 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_gyrate_sd.R                            |  306 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_iji.R                                  |  354 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_joinent.R                              |  336 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_lpi.R                                  |  294 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_lsi.R                                  |  354 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_mesh.R                                 |  304 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_msidi.R                                |  304 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_msiei.R                                |  294 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_mutinf.R                               |  350 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_ndca.R                                 |  354 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_np.R                                   |  276 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_pafrac.R                               |  380 ++--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_para_cv.R                              |  296 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_para_mn.R                              |  296 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_para_sd.R                              |  296 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_pd.R                                   |  320 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_pladj.R                                |  288 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_pr.R                                   |  252 +-
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_prd.R                                  |  292 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_rpr.R                                  |  312 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_shape_cv.R                             |  302 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_shape_mn.R                             |  302 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_shape_sd.R                             |  302 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_shdi.R                                 |  280 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_shei.R                                 |  280 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_sidi.R                                 |  288 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_siei.R                                 |  292 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_split.R                                |  300 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_ta.R                                   |  280 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_tca.R                                  |  350 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_l_te.R                                   |  376 ++--
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_area.R                                 |  344 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_cai.R                                  |  398 ++--
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_circle.R                               |  444 ++--
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_contig.R                               |  426 ++--
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_core.R                                 |  474 ++---
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_enn.R                                  |  466 ++---
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_frac.R                                 |  336 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_gyrate.R                               |  404 ++--
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_ncore.R                                |  582 +++---
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_para.R                                 |  322 +--
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_perim.R                                |  428 ++--
 landscapemetrics-1.1/landscapemetrics/R/lsm_p_shape.R                                |  356 +--
 landscapemetrics-1.1/landscapemetrics/R/matrix_to_raster.R                           |  164 -
 landscapemetrics-1.1/landscapemetrics/R/pad_raster.R                                 |  507 ++---
 landscapemetrics-1.1/landscapemetrics/R/raster_to_points.R                           |  224 ++
 landscapemetrics-1.1/landscapemetrics/R/sample_lsm.R                                 |  676 ++++---
 landscapemetrics-1.1/landscapemetrics/R/show_cores.R                                 |  566 +++---
 landscapemetrics-1.1/landscapemetrics/R/show_correlation.R                           |  486 ++---
 landscapemetrics-1.1/landscapemetrics/R/show_lsm.R                                   |  613 +++---
 landscapemetrics-1.1/landscapemetrics/R/show_patches.R                               |  446 ++--
 landscapemetrics-1.1/landscapemetrics/R/spatialize_lsm.R                             |only
 landscapemetrics-1.1/landscapemetrics/R/window_lsm.R                                 |  909 +++++-----
 landscapemetrics-1.1/landscapemetrics/build/vignette.rds                             |binary
 landscapemetrics-1.1/landscapemetrics/inst/doc/getstarted.html                       |  365 ++--
 landscapemetrics-1.1/landscapemetrics/man/calculate_lsm.Rd                           |   40 
 landscapemetrics-1.1/landscapemetrics/man/check_landscape.Rd                         |   14 
 landscapemetrics-1.1/landscapemetrics/man/construct_buffer.Rd                        |   39 
 landscapemetrics-1.1/landscapemetrics/man/extract_lsm.Rd                             |   97 -
 landscapemetrics-1.1/landscapemetrics/man/figures/README-unnamed-chunk-1-1.png       |binary
 landscapemetrics-1.1/landscapemetrics/man/get_adjacencies.Rd                         |   27 
 landscapemetrics-1.1/landscapemetrics/man/get_boundaries.Rd                          |   25 
 landscapemetrics-1.1/landscapemetrics/man/get_circumscribingcircle.Rd                |   16 
 landscapemetrics-1.1/landscapemetrics/man/get_nearestneighbour.Rd                    |   12 
 landscapemetrics-1.1/landscapemetrics/man/get_patches.Rd                             |    5 
 landscapemetrics-1.1/landscapemetrics/man/get_unique_values.Rd                       |    3 
 landscapemetrics-1.1/landscapemetrics/man/list_lsm.Rd                                |    6 
 landscapemetrics-1.1/landscapemetrics/man/lsm_l_ent.Rd                               |   21 
 landscapemetrics-1.1/landscapemetrics/man/matrix_to_raster.Rd                        |    2 
 landscapemetrics-1.1/landscapemetrics/man/pad_raster.Rd                              |    5 
 landscapemetrics-1.1/landscapemetrics/man/raster_to_points.Rd                        |   17 
 landscapemetrics-1.1/landscapemetrics/man/sample_lsm.Rd                              |  106 -
 landscapemetrics-1.1/landscapemetrics/man/show_correlation.Rd                        |   15 
 landscapemetrics-1.1/landscapemetrics/man/spatialize_lsm.Rd                          |only
 landscapemetrics-1.1/landscapemetrics/man/window_lsm.Rd                              |   82 
 landscapemetrics-1.1/landscapemetrics/src/Makevars                                   |    2 
 landscapemetrics-1.1/landscapemetrics/src/Makevars.win                               |    2 
 landscapemetrics-1.1/landscapemetrics/src/RcppExports.cpp                            |    4 
 landscapemetrics-1.1/landscapemetrics/src/rcpp_get_coocurrence_matrix.cpp            |    3 
 landscapemetrics-1.1/landscapemetrics/src/rcpp_get_coocurrence_matrix.h              |    3 
 landscapemetrics-1.1/landscapemetrics/src/rcpp_get_coocurrence_matrix_diag.cpp       |    2 
 landscapemetrics-1.1/landscapemetrics/src/rcpp_get_coocurrence_matrix_diag.h         |    4 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-calculate-lsm.R            |  186 +-
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-construct-buffer.R         |   48 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-extract-lsm.R              |  106 -
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-get-adjacencies.R          |  103 -
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-get-boundaries.R           |   87 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-get-circumscribungcircle.R |  131 -
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-get-nearestneighbour.R     |   51 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-get-unique-values.R        |  174 +
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-list-lsm.R                 |  140 +
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-lsm-c-ai.R                 |   58 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-lsm-c-iji.R                |   63 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-lsm-c-pafrac.R             |   61 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-lsm-l-contag.R             |   61 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-lsm-l-iji.R                |   63 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-lsm-l-pafrac.R             |   61 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-raster-to-points.R         |   53 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-sample-lsm.R               |  215 +-
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-show-cores.R               |  100 -
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-show-lsm.R                 |   83 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-show-patches.R             |   74 
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-spatialize-lsm.R           |only
 landscapemetrics-1.1/landscapemetrics/tests/testthat/test-window-lsm.R               |   77 
 211 files changed, 28769 insertions(+), 26853 deletions(-)

More information about landscapemetrics at CRAN
Permanent link

New package PREPShiny with initial version 0.1.0
Package: PREPShiny
Type: Package
Title: Interactive Document for Preprocessing the Dataset
Version: 0.1.0
Author: Kartikeya Bolar
Maintainer: Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>
Description: An interactive document for preprocessing the dataset using 'rmarkdown' and 'shiny' packages. Runtime examples are provided in the package function as well as at <https://analyticmodels.shinyapps.io/PREPShiny/>.
License: GPL-2
Encoding: UTF-8
LazyData: TRUE
Depends: R (>= 3.0.3)
Imports: shiny,rmarkdown,psycho,dplyr,datasets
RoxygenNote: 6.1.0
NeedsCompilation: no
Packaged: 2019-04-19 19:51:01 UTC; KARTIKEYA
Repository: CRAN
Date/Publication: 2019-04-25 12:30:03 UTC

More information about PREPShiny at CRAN
Permanent link

Package nonmemica updated to version 0.9.0 with previous version 0.8.6 dated 2019-02-04

Title: Create and Evaluate NONMEM Models in a Project Context
Description: Systematically creates and modifies NONMEM(R) control streams. Harvests NONMEM output, builds run logs, creates derivative data, generates diagnostics. NONMEM (ICON Development Solutions <http://www.iconplc.com/>) is software for nonlinear mixed effects modeling. See 'package?nonmemica'.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>

Diff between nonmemica versions 0.8.6 dated 2019-02-04 and 0.9.0 dated 2019-04-25

 DESCRIPTION                    |    6 
 MD5                            |  326 ++++++++++++++++++++---------------------
 R/bootstrap.R                  |    4 
 R/canonical.R                  |    4 
 R/definitions.R                |    4 
 R/getset.R                     |   14 +
 R/init.R                       |   48 +++++-
 R/likebut.R                    |   33 +++-
 R/model.R                      |   39 ++++
 R/nonmemica.R                  |    3 
 R/partab.R                     |    8 -
 R/path.R                       |   11 +
 R/superset.R                   |   25 ++-
 R/tad.R                        |    4 
 R/util.R                       |   14 +
 R/xpath.R                      |    7 
 inst/doc/parameter-table.html  |   68 ++++----
 man/as.best.Rd                 |   19 ++
 man/as.bootstrap.Rd            |    6 
 man/as.bootstrap.numeric.Rd    |    3 
 man/as.character.init.Rd       |    5 
 man/as.character.inits.Rd      |    5 
 man/as.character.items.Rd      |    5 
 man/as.character.model.Rd      |    5 
 man/as.init.Rd                 |    5 
 man/as.init.numeric.Rd         |    3 
 man/as.inits.Rd                |    9 +
 man/as.inits.numeric.Rd        |    3 
 man/as.matrices.Rd             |    4 
 man/as.matrices.inits.Rd       |    4 
 man/as.matrices.records.Rd     |    4 
 man/as.model.Rd                |    9 +
 man/as.model.numeric.Rd        |    5 
 man/as.omega.Rd                |    3 
 man/as.omega.model.Rd          |    3 
 man/as.tab.Rd                  |    3 
 man/as.tab.model.Rd            |    3 
 man/as.theta.Rd                |    3 
 man/as.theta.model.Rd          |    3 
 man/as.xml_document.Rd         |    9 +
 man/as.xml_document.numeric.Rd |    4 
 man/but.Rd                     |    3 
 man/but.default.Rd             |    3 
 man/cash-.init.Rd              |    3 
 man/cash-set-.init.Rd          |    3 
 man/comwidth.Rd                |    5 
 man/comwidth.character.Rd      |    4 
 man/comwidth.inits.Rd          |    4 
 man/comwidth.items.Rd          |    4 
 man/comwidthOne.Rd             |    3 
 man/comwidthOne.character.Rd   |    3 
 man/datafile.Rd                |    9 +
 man/datafile.character.Rd      |    9 +
 man/datafile.numeric.Rd        |    9 +
 man/definitions.Rd             |    6 
 man/definitions.numeric.Rd     |    3 
 man/depends.Rd                 |    3 
 man/depends.default.Rd         |    3 
 man/enclose.Rd                 |    7 
 man/errors.Rd                  |    4 
 man/errors.character.Rd        |    3 
 man/errors.numeric.Rd          |    4 
 man/estimates.Rd               |    4 
 man/estimates.character.Rd     |    3 
 man/estimates.numeric.Rd       |    4 
 man/fixed-set-.init.Rd         |    5 
 man/fixed-set-.inits.Rd        |    5 
 man/fixed-set-.model.Rd        |    5 
 man/fixed-set.Rd               |    5 
 man/fixed.Rd                   |   13 +
 man/fixed.model.Rd             |    5 
 man/format.init.Rd             |    4 
 man/format.inits.Rd            |    4 
 man/format.items.Rd            |    4 
 man/format.model.Rd            |    4 
 man/generalize.Rd              |   14 +
 man/grapes-contains-grapes.Rd  |    5 
 man/initDex.Rd                 |    3 
 man/initDex.model.Rd           |    3 
 man/initSubscripts.Rd          |    3 
 man/initSubscripts.model.Rd    |    3 
 man/initial-set-.model.Rd      |    4 
 man/initial-set.Rd             |    4 
 man/initial.Rd                 |    4 
 man/initial.model.Rd           |    4 
 man/like.Rd                    |    3 
 man/like.default.Rd            |    3 
 man/locf.Rd                    |   25 +++
 man/lower-set-.model.Rd        |    4 
 man/lower-set.Rd               |    4 
 man/lower.Rd                   |    4 
 man/lower.model.Rd             |    4 
 man/maxWidths.Rd               |    3 
 man/maxWidths.list.Rd          |    3 
 man/meta.Rd                    |   14 +
 man/meta.character.Rd          |   14 +
 man/meta.numeric.Rd            |   14 +
 man/metaplot.character.Rd      |   13 +
 man/metaplot.numeric.Rd        |   13 +
 man/metaplot_character.Rd      |   13 +
 man/metasuperset.Rd            |   16 +-
 man/modeldir.Rd                |    9 +
 man/modelfile.Rd               |    9 +
 man/modelpath.Rd               |    9 +
 man/modelpath.character.Rd     |    8 +
 man/modelpath.numeric.Rd       |    9 +
 man/ninput.Rd                  |   14 +
 man/ninput.character.Rd        |   13 +
 man/ninput.numeric.Rd          |   13 +
 man/nms_nonmem.Rd              |    5 
 man/nms_nonmem.character.Rd    |    5 
 man/nms_nonmem.model.Rd        |    4 
 man/nms_nonmem.numeric.Rd      |    4 
 man/nonmemica.Rd               |    4 
 man/ord.inits.Rd               |    3 
 man/ord.items.Rd               |    3 
 man/padded.Rd                  |    7 
 man/parameters.Rd              |    4 
 man/parameters.character.Rd    |    8 -
 man/parameters.numeric.Rd      |    4 
 man/parens.Rd                  |    7 
 man/partab.Rd                  |    6 
 man/partab.character.Rd        |    3 
 man/partab.numeric.Rd          |    4 
 man/pool.Rd                    |    7 
 man/prettycom.Rd               |    3 
 man/prettycom.character.Rd     |    3 
 man/print.init.Rd              |    4 
 man/print.inits.Rd             |    4 
 man/print.items.Rd             |    4 
 man/print.model.Rd             |    4 
 man/problem.Rd                 |    4 
 man/problem.character.Rd       |    4 
 man/problem.numeric.Rd         |    4 
 man/problem_.Rd                |    4 
 man/read.model.Rd              |    5 
 man/runhead.Rd                 |    7 
 man/runlog.Rd                  |    3 
 man/runlog.character.Rd        |    3 
 man/runlog.numeric.Rd          |    4 
 man/shuffle.Rd                 |   14 +
 man/specfile.Rd                |    9 +
 man/specfile.character.Rd      |    7 
 man/specfile.numeric.Rd        |    8 +
 man/sub-.model.Rd              |    5 
 man/sub-sub-.model.Rd          |    5 
 man/superset.Rd                |   13 +
 man/superset.character.Rd      |   14 +
 man/superset.numeric.Rd        |   13 +
 man/superspec.Rd               |   13 +
 man/superspec.character.Rd     |   13 +
 man/superspec.numeric.Rd       |   14 +
 man/tad.Rd                     |    4 
 man/text2decimal.Rd            |    7 
 man/tod.Rd                     |    2 
 man/updated.Rd                 |    4 
 man/updated.character.Rd       |    4 
 man/updated.numeric.Rd         |    4 
 man/upper-set-.model.Rd        |    4 
 man/upper-set.Rd               |    4 
 man/upper.Rd                   |    4 
 man/upper.model.Rd             |    4 
 man/write.model.Rd             |    5 
 man/xpath.Rd                   |   10 +
 164 files changed, 1285 insertions(+), 221 deletions(-)

More information about nonmemica at CRAN
Permanent link

New package MLDAShiny with initial version 0.1.0
Package: MLDAShiny
Type: Package
Title: Interactive Document for Working with Discriminant Analysis
Version: 0.1.0
Author: Kartikeya Bolar
Maintainer: Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>
Description: An interactive document on the topic of linear discriminant analysis using 'rmarkdown' and 'shiny' packages. Runtime examples are provided in the package function as well as at <https://analyticmodels.shinyapps.io/DiscriminantAnalysisModelling/>.
License: GPL-2
Encoding: UTF-8
LazyData: TRUE
Depends: R (>= 3.0.3)
Imports: shiny,rmarkdown,klaR,MASS,dplyr,datasets,caret,DiscriMiner,e1071,rhandsontable
RoxygenNote: 6.1.0
NeedsCompilation: no
Packaged: 2019-04-24 09:27:16 UTC; KARTIKEYA
Repository: CRAN
Date/Publication: 2019-04-25 12:20:02 UTC

More information about MLDAShiny at CRAN
Permanent link

Package encode updated to version 0.3.6 with previous version 0.3.4 dated 2018-03-28

Title: Represent Ordered Lists and Pairs as Strings
Description: Interconverts between ordered lists and compact string notation. Useful for capturing code lists, and pair-wise codes and decodes, for text storage. Analogous to factor levels and labels. Generics encode() and decode() perform interconversion, while codes() and decodes() extract components of an encoding. The function encoded() checks whether something is interpretable as an encoding. If a vector has an encoded 'guide' attribute, as_factor() uses it to coerce to factor.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>

Diff between encode versions 0.3.4 dated 2018-03-28 and 0.3.6 dated 2019-04-25

 DESCRIPTION              |    9 ++---
 MD5                      |   32 +++++++++---------
 NAMESPACE                |    2 +
 R/encode.R               |   83 +++++++++++++++++++++++++++++++++++++++++++++++
 man/as_factor.Rd         |only
 man/codes.Rd             |    2 +
 man/codes.default.Rd     |    3 +
 man/decode.Rd            |    4 ++
 man/decode.data.frame.Rd |only
 man/decode.default.Rd    |    4 ++
 man/decodes.Rd           |    2 +
 man/decodes.default.Rd   |    3 +
 man/encode.Rd            |    3 +
 man/encode.character.Rd  |    4 ++
 man/encode.default.Rd    |    4 ++
 man/encode.list.Rd       |    4 ++
 man/encoded.Rd           |    2 +
 man/encoded.default.Rd   |    3 +
 18 files changed, 145 insertions(+), 19 deletions(-)

More information about encode at CRAN
Permanent link

Package ukbtools updated to version 0.11.2 with previous version 0.11.1 dated 2019-03-14

Title: Manipulate and Explore UK Biobank Data
Description: A set of tools to create a UK Biobank <http://www.ukbiobank.ac.uk/> dataset from a UKB fileset (.tab, .r, .html), visualize primary demographic data for a sample subset, query ICD diagnoses, retrieve genetic metadata, read and write standard file formats for genetic analyses.
Author: Ken Hanscombe [aut, cre]
Maintainer: Ken Hanscombe <ken.hanscombe@gmail.com>

Diff between ukbtools versions 0.11.1 dated 2019-03-14 and 0.11.2 dated 2019-04-25

 DESCRIPTION                    |   14 +++++++-------
 MD5                            |    8 ++++----
 NEWS.md                        |   13 +++++++++++++
 R/ukb_dataset.R                |    6 +++---
 inst/doc/explore-ukb-data.html |    4 ++--
 5 files changed, 29 insertions(+), 16 deletions(-)

More information about ukbtools at CRAN
Permanent link

Package osmdata updated to version 0.1.0 with previous version 0.0.10 dated 2019-03-21

Title: Import 'OpenStreetMap' Data as Simple Features or Spatial Objects
Description: Download and import of 'OpenStreetMap' ('OSM') data as 'sf' or 'sp' objects. 'OSM' data are extracted from the 'Overpass' web server and processed with very fast 'C++' routines for return to 'R'.
Author: Mark Padgham [aut, cre], Bob Rudis [aut], Robin Lovelace [aut], Maëlle Salmon [aut], Andrew Smith [ctb], James Smith [ctb], Marcin Kalicinski [ctb, cph] (Author of included RapidXML code), Finkelstein Noam [ctb, cph] (Author of included stub.R code), Bartnik Lukasz [ctb, cph] (Author of included stub.R code)
Maintainer: Mark Padgham <mark.padgham@email.com>

Diff between osmdata versions 0.0.10 dated 2019-03-21 and 0.1.0 dated 2019-04-25

 DESCRIPTION                      |    9 ++++---
 MD5                              |   44 ++++++++++++++++++++++-----------------
 NAMESPACE                        |    1 
 NEWS.md                          |   10 ++++++++
 R/elevation.R                    |only
 R/get-osmdata.R                  |   16 +++++++-------
 R/getbb.R                        |    6 +++--
 R/opq.R                          |    4 +--
 R/trim-osmdata.R                 |   22 ++++++++-----------
 R/zzz.R                          |    5 ++++
 build/vignette.rds               |binary
 inst/doc/osm-sf-translation.Rmd  |    4 +--
 inst/doc/osm-sf-translation.html |    8 +++----
 inst/doc/osmdata-sc.R            |only
 inst/doc/osmdata-sc.Rmd          |only
 inst/doc/osmdata-sc.html         |only
 inst/doc/osmdata.R               |    2 -
 inst/doc/osmdata.Rmd             |    2 -
 inst/doc/osmdata.html            |    6 ++---
 man/osm_elevation.Rd             |only
 src/convert-osm-rcpp.cpp         |    4 +--
 tests/testthat/test-trim.R       |    5 ----
 tests/testthat/test-unique.R     |   18 +++++++++++++++
 vignettes/osm-sf-translation.Rmd |    4 +--
 vignettes/osmdata-sc.Rmd         |only
 vignettes/osmdata.Rmd            |    2 -
 26 files changed, 103 insertions(+), 69 deletions(-)

More information about osmdata at CRAN
Permanent link

New package streamDepletr with initial version 0.1.0
Package: streamDepletr
Title: Estimate Streamflow Depletion Due to Groundwater Pumping
Version: 0.1.0
Description: Implementation of analytical models for estimating streamflow depletion due to groundwater pumping, and other related tools. Functions are broadly split into two groups: (1) analytical streamflow depletion models, which estimate streamflow depletion for a single stream reach resulting from groundwater pumping; and (2) depletion apportionment equations, which distribute estimated streamflow depletion among multiple stream reaches within a stream network. See Zipper et al. (2018) <doi:10.1029/2018WR022707> for more information on depletion apportionment equations and Zipper et al. (2019) <doi:10.31223/osf.io/uqbd7> for more information on analytical depletion functions, which combine analytical models and depletion apportionment equations.
Authors@R: c( person("Samuel C.", "Zipper", email = "samzipper@ku.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-8735-5757")), person("Ben", "Kerr", email = "ben@foundryspatial.com", role = "ctb"), person("Tom", "Gleeson", email = "tgleeson@uvic.ca", role = "ctb", comment = c(ORCID = "0000-0001-9493-7707")), person("Qiang", "Li", email = "liqiang1205@gmail.com", role = "rev", comment = c(ORCID = "0000-0003-2221-6905")), person("Foundry Spatial Ltd.", role = "cph") )
Maintainer: Samuel C. Zipper <samzipper@ku.edu>
Copyright: Foundry Spatial Ltd.
URL: https://github.com/samzipper/streamDepletr
BugReports: https://github.com/samzipper/streamDepletr/issues
Depends: R (>= 3.5)
License: BSD_3_clause + file LICENSE
Imports: Rmpfr, dplyr, magrittr
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown, dismo, sp, raster, deldir, rgeos, ggplot2, reshape2, sf, scales
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-04-24 18:43:34 UTC; Sam
Author: Samuel C. Zipper [aut, cre] (<https://orcid.org/0000-0002-8735-5757>), Ben Kerr [ctb], Tom Gleeson [ctb] (<https://orcid.org/0000-0001-9493-7707>), Qiang Li [rev] (<https://orcid.org/0000-0003-2221-6905>), Foundry Spatial Ltd. [cph]
Repository: CRAN
Date/Publication: 2019-04-25 10:40:03 UTC

More information about streamDepletr at CRAN
Permanent link

New package sigminer with initial version 0.1.9
Package: sigminer
Title: Capture Genomic Variation Signatures using Non-Negative Matrix Factorization
Version: 0.1.9
Authors@R: c( person("Shixiang", "Wang", email = "w_shixiang@163.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9855-7357")), person("Geoffrey", "Macintyre", role = c("ctb")), person("Xue-Song", "Liu", role = c("ctb")))
Description: Contains functions for identification of copy number signatures (Geoffrey et al. (2018) <doi:10.1038/s41588-018-0179-8>) and mutation signatures (Alexandrov et al. (2018) <doi:10.1038/nature12477>) by non-negative matrix factorization, signature analysis and visualization. It can be used to capture signatures of genomic variation, compare genotype or phenotype features of different signatures and thus uncover the relationship between the mechanism of genomic variation and phenotypes in cancer.
URL: https://github.com/ShixiangWang/sigminer
BugReports: https://github.com/ShixiangWang/sigminer/issues
Depends: R (>= 3.5)
Imports: cluster, corrplot, cowplot, data.table, doParallel, dplyr, flexmix, foreach, ggplot2, maftools, methods, NMF, RColorBrewer, tidyr, magrittr, purrr
biocViews:
Suggests: BSgenome.Hsapiens.UCSC.hg19, cowsay, ggpubr, knitr, rmarkdown, covr, testthat, prettydoc, pheatmap
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-04-25 08:24:18 UTC; wsx
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>), Geoffrey Macintyre [ctb], Xue-Song Liu [ctb]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Repository: CRAN
Date/Publication: 2019-04-25 11:00:03 UTC

More information about sigminer at CRAN
Permanent link

New package MEtest with initial version 1.0
Package: MEtest
Type: Package
Title: A Homogeneity Test under the Presence of Measurement Errors
Version: 1.0
Date: 2019-04-24
Author: DongHyuk Lee, Samiran Sinha
Maintainer: DongHyuk Lee <leedhyuk@gmail.com>
Depends: R (>= 3.2)
Imports: statmod
Description: Provides a function me.test() to test equality of distributions when observations are subject to measurement errors.
License: GPL-3
NeedsCompilation: yes
Packaged: 2019-04-25 03:10:21 UTC; cutri
Repository: CRAN
Date/Publication: 2019-04-25 10:10:03 UTC

More information about MEtest at CRAN
Permanent link

Package cliqueMS updated to version 0.3.1 with previous version 0.3.0 dated 2019-01-30

Title: Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics Data
Description: Annotates data from liquid chromatography coupled to mass spectrometry (LC/MS) metabolomics experiments. Based on a network algorithm (O.Senan, A. Aguilar- Mogas, M. Navarro, O. Yanes, R.Guimerà and M. Sales-Pardo, Metabolomics Conference (2016), Dublin), 'CliqueMS' builds a weighted similarity network where nodes are features and edges are weighted according to the similarity of this features. Then it searches for the most plausible division of the similarity network into cliques (fully connected components). Finally it annotates metabolites within each clique, obtaining for each annotated metabolite the neutral mass and their features, corresponding to isotopes, ionization adducts and fragmentation adducts of that metabolite.
Author: Oriol Senan Campos [aut, cre], Antoni Aguilar-Mogas [aut], Jordi Capellades [aut], Miriam Navarro [aut], Oscar Yanes [aut], Roger Guimerà [aut], Marta Sales-Pardo [aut]
Maintainer: Oriol Senan Campos <oriol.senan@urv.cat>

Diff between cliqueMS versions 0.3.0 dated 2019-01-30 and 0.3.1 dated 2019-04-25

 DESCRIPTION                     |    8 ++++----
 MD5                             |   14 +++++++-------
 NEWS.md                         |    5 +++++
 build/vignette.rds              |binary
 inst/doc/annotate_features.R    |    8 ++++----
 inst/doc/annotate_features.Rmd  |    8 ++++----
 inst/doc/annotate_features.html |   10 +++++-----
 vignettes/annotate_features.Rmd |    8 ++++----
 8 files changed, 33 insertions(+), 28 deletions(-)

More information about cliqueMS at CRAN
Permanent link

New package BALLI with initial version 0.2.0
Package: BALLI
Type: Package
Title: Expression RNA-Seq Data Analysis Based on Linear Mixed Model
Version: 0.2.0
Author: Kyungtaek Park <qkrrudxor147@snu.ac.kr>
Maintainer: Kyungtaek Park <qkrrudxor147@snu.ac.kr>
Description: Analysis of gene expression RNA-seq data using Bartlett-Adjusted Likelihood-based LInear model (BALLI). Based on likelihood ratio test, it provides comparisons for effect of one or more variables. See Kyungtaek Park (2018) <doi:10.1101/344929> for more information.
Depends: R (>= 2.15.0), edgeR, limma, MASS, parallel, stats, methods
License: GPL
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-04-24 13:21:01 UTC; KyungtaekPark
Repository: CRAN
Date/Publication: 2019-04-25 10:40:07 UTC

More information about BALLI at CRAN
Permanent link

New package suppdata with initial version 1.1-1
Package: suppdata
Type: Package
Title: Downloading Supplementary Data from Published Manuscripts
Version: 1.1-1
Authors@R: c(person("William D.", "Pearse", email = "will.pearse@gmail.com", role = c("aut", "cre"), comment=c(ORCID="0000-0002-6241-3164")), person("Scott", "Chamberlain", role = "aut", comment=c(ORCID="0000-0003-1444-9135")), person("Daniel", "Nuest", role = "aut", comment=c(ORCID="0000-0002-0024-5046")), person("Ross", "Mounce", role = c("rev"), comment = "Ross Mounce reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/195"), person("Sarah", "Supp", role = c("rev"), comment = "Sarah Supp reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/195"))
Maintainer: William D. Pearse <will.pearse@gmail.com>
Description: Downloads data supplementary materials from manuscripts, using papers' DOIs as references. Facilitates open, reproducible research workflows: scientists re-analyzing published datasets can work with them as easily as if they were stored on their own computer, and others can track their analysis workflow painlessly. The main function suppdata() returns a (temporary) location on the user's computer where the file is stored, making it simple to use suppdata() with standard functions like read.csv().
License: MIT + file LICENSE
URL: https://github.com/ropensci/suppdata
BugReports: https://github.com/ropensci/suppdata
VignetteBuilder: knitr
LazyLoad: yes
Suggests: knitr (>= 1.6), testthat (>= 2.0.0), covr (>= 3.0.1), fulltext (>= 0.1.4.9000)
Imports: httr (>= 1.0.0), xml2 (>= 1.2.0), jsonlite (>= 1.5), rcrossref (>= 0.8.0)
Encoding: UTF-8
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-04-24 18:34:25 UTC; will
Author: William D. Pearse [aut, cre] (<https://orcid.org/0000-0002-6241-3164>), Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>), Daniel Nuest [aut] (<https://orcid.org/0000-0002-0024-5046>), Ross Mounce [rev] (Ross Mounce reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/195), Sarah Supp [rev] (Sarah Supp reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/195)
Repository: CRAN
Date/Publication: 2019-04-25 09:30:02 UTC

More information about suppdata at CRAN
Permanent link

New package EMSNM with initial version 1.0
Package: EMSNM
Type: Package
Title: EM Algorithm for Sigmoid Normal Model
Version: 1.0
Date: 2019-04-19
Author: Linsui Deng <denglinsui@gmail.com>
Maintainer: Linsui Deng <denglinsui@gmail.com>
Description: It provides a method based on EM algorithm to estimate the parameter of a mixture model, Sigmoid-Normal Model, where the samples come from several normal distributions (also call them subgroups) whose mean is determined by co-variable Z and coefficient alpha while the variance are homogeneous. Meanwhile, the subgroup each item belongs to is determined by co-variables X and coefficient eta through Sigmoid link function which is the extension of Logistic Link function. It uses bootstrap to estimate the standard error of parameters. When sample is indeed separable, removing estimation with abnormal sigma, the estimation of alpha is quite well. I used this method to explore the subgroup structure of HIV patients and it can be used in other domains where exists subgroup structure.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2019-04-24 16:49:30 UTC; huihui
Repository: CRAN
Date/Publication: 2019-04-25 09:10:03 UTC

More information about EMSNM at CRAN
Permanent link

New package CramTest with initial version 1.5
Package: CramTest
Type: Package
Title: Univariate Cramer Test on Two Samples of Data
Version: 1.5
Date: 2019-04-24
Author: Alison Telford
Maintainer: Alison Telford <atelford7@gmail.com>
Description: Performs the univariate two-sample Cramer test to identify differences between two groups. This package provides a faster method for calculating the p-value. For further information, refer to "Properties, Advantages and a Faster p-value Calculation of the Cramer test" by Telford et al. (submitted for review).
License: GPL (>= 3)
Depends: fExtremes
Imports: Rcpp (>= 0.11.00)
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2019-04-24 19:02:16 UTC; Ali
Repository: CRAN
Date/Publication: 2019-04-25 09:30:06 UTC

More information about CramTest at CRAN
Permanent link

Package photobiology updated to version 0.9.27 with previous version 0.9.26 dated 2019-02-12

Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use in photobiology and radiation meteorology and climatology. Calculation of effective (weighted) and not-weighted irradiances/doses, fluence rates, transmittance, reflectance, absorptance, absorbance and diverse ratios and other derived quantities from spectral data. Local maxima and minima. Conversion between energy- and photon-based units. Wavelength interpolation. Astronomical calculations related solar angles and day length. Colours and vision. This package is part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>), Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>), Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

Diff between photobiology versions 0.9.26 dated 2019-02-12 and 0.9.27 dated 2019-04-25

 DESCRIPTION                        |   18 
 MD5                                |  121 ++--
 NEWS                               |   14 
 R/meeus.r                          |   32 -
 R/mspct.methods.R                  |    2 
 R/mspct.row.funs.r                 |   10 
 R/on-attach.R                      |    2 
 R/photobiology.r                   |    2 
 R/rbindspct.r                      |    4 
 R/spct.operators.r                 |    2 
 R/sun.calc.r                       |  296 +++++----
 R/sun.data.r                       |    8 
 R/water.vapour.R                   |    4 
 README.md                          |   20 
 build/vignette.rds                 |binary
 data/A.illuminant.spct.rda         |binary
 data/D2-FEL-constants.rda          |binary
 data/D65.illuminant.spct.rda       |binary
 data/Ler-leaf-spct.rda             |binary
 data/beesxyz.spct.rda              |binary
 data/black_body.spct.rda           |binary
 data/ccd.spct.rda                  |binary
 data/ciev10.spct.rda               |binary
 data/ciev2.spct.rda                |binary
 data/ciexyzCC10.spct.rda           |binary
 data/ciexyzCC2.spct.rda            |binary
 data/ciexyzCMF10.spct.rda          |binary
 data/ciexyzCMF2.spct.rda           |binary
 data/clear.spct.rda                |binary
 data/clear_body.spct.rda           |binary
 data/filter-cps-mspct.rda          |binary
 data/green_leaf.spct.rda           |binary
 data/opaque.spct.rda               |binary
 data/photodiode.spct.rda           |binary
 data/polyester.spct.rda            |binary
 data/sun.daily.data.rda            |binary
 data/sun.daily.spct.rda            |binary
 data/sun.data.rda                  |binary
 data/sun.spct.rda                  |binary
 data/white-led-spct.rda            |binary
 data/white_body.spct.rda           |binary
 data/yellow.gel.rda                |binary
 inst/doc/userguide1-intro.Rmd      |    2 
 inst/doc/userguide1-intro.html     |  205 ++++++
 inst/doc/userguide2-radiation.html | 1107 ++++++++++++++++++++++---------------
 inst/doc/userguide3-astronomy.html |  702 +++++++++++++++--------
 man/day_night.Rd                   |   45 -
 man/extract.Rd                     |    2 
 man/extract_mspct.Rd               |    2 
 man/julian_day.Rd                  |   16 
 man/photobiology-package.Rd        |    2 
 man/round.Rd                       |    2 
 man/solar_time.Rd                  |    4 
 man/sun.daily.data.Rd              |    2 
 man/sun.daily.spct.Rd              |    2 
 man/sun.data.Rd                    |    2 
 man/sun.spct.Rd                    |    2 
 man/sun_angles.Rd                  |   42 -
 man/tz_time_diff.Rd                |    2 
 man/validate_geocode.Rd            |only
 man/water_vp_sat.Rd                |    4 
 vignettes/userguide1-intro.Rmd     |    2 
 62 files changed, 1698 insertions(+), 984 deletions(-)

More information about photobiology at CRAN
Permanent link

Package icesTAF updated to version 3.0-0 with previous version 2.3-0 dated 2019-04-08

Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework <http://taf.ices.dk> to organize data, methods, and results used in ICES assessments. ICES is an organization facilitating international collaboration in marine science.
Author: Arni Magnusson [aut, cre], Colin Millar [aut], Alexandros Kokkalis [ctb]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>

Diff between icesTAF versions 2.3-0 dated 2019-04-08 and 3.0-0 dated 2019-04-25

 icesTAF-2.3-0/icesTAF/R/utf8.to-latin1.R     |only
 icesTAF-3.0-0/icesTAF/DESCRIPTION            |   11 +--
 icesTAF-3.0-0/icesTAF/MD5                    |   54 +++++++++--------
 icesTAF-3.0-0/icesTAF/NAMESPACE              |    4 +
 icesTAF-3.0-0/icesTAF/NEWS                   |   19 ++++++
 icesTAF-3.0-0/icesTAF/R/draft.data.R         |   15 ++--
 icesTAF-3.0-0/icesTAF/R/draft.software.R     |    8 --
 icesTAF-3.0-0/icesTAF/R/ds.package.R         |    2 
 icesTAF-3.0-0/icesTAF/R/icesTAF-package.R    |    3 
 icesTAF-3.0-0/icesTAF/R/period.R             |only
 icesTAF-3.0-0/icesTAF/R/process.bib.R        |   47 +++++++++++++--
 icesTAF-3.0-0/icesTAF/R/taf.bootstrap.R      |    5 -
 icesTAF-3.0-0/icesTAF/R/taf.library.R        |   69 +++++++++-------------
 icesTAF-3.0-0/icesTAF/R/taf.png.R            |   15 ++--
 icesTAF-3.0-0/icesTAF/R/taf.skeleton.R       |   14 +---
 icesTAF-3.0-0/icesTAF/R/utf8.to.latin1.R     |only
 icesTAF-3.0-0/icesTAF/R/write.taf.R          |    5 +
 icesTAF-3.0-0/icesTAF/R/zoom.R               |   83 ++++++++++++++++++---------
 icesTAF-3.0-0/icesTAF/man/draft.data.Rd      |   15 ++--
 icesTAF-3.0-0/icesTAF/man/draft.software.Rd  |    6 -
 icesTAF-3.0-0/icesTAF/man/icesTAF-package.Rd |    3 
 icesTAF-3.0-0/icesTAF/man/latin1.to.utf8.Rd  |    2 
 icesTAF-3.0-0/icesTAF/man/period.Rd          |only
 icesTAF-3.0-0/icesTAF/man/process.bib.Rd     |    2 
 icesTAF-3.0-0/icesTAF/man/taf.bootstrap.Rd   |    2 
 icesTAF-3.0-0/icesTAF/man/taf.library.Rd     |   46 +++++---------
 icesTAF-3.0-0/icesTAF/man/taf.png.Rd         |   15 ++--
 icesTAF-3.0-0/icesTAF/man/taf.skeleton.Rd    |   11 ---
 icesTAF-3.0-0/icesTAF/man/write.taf.Rd       |    3 
 icesTAF-3.0-0/icesTAF/man/zoom.Rd            |   42 +++++++++----
 30 files changed, 297 insertions(+), 204 deletions(-)

More information about icesTAF at CRAN
Permanent link

New package DataViz with initial version 0.2
Package: DataViz
Type: Package
Title: Data Visualisation Using an HTML Page and 'D3.js'
Version: 0.2
Date: 2019-04-23
Author: Timothy Bell
Maintainer: Timothy Bell <horia.yeb@gmail.com>
Description: Gives access to data visualisation methods that are relevant from the statistician's point of view. Using 'D3''s existing data visualisation tools to empower R language and environment. The throw chart method is a line chart used to illustrate paired data sets (such as before-after, male-female).
License: GPL (>= 2)
Imports: Rcpp (>= 1.0.0)
LinkingTo: Rcpp
Depends: tibble
LazyData: true
NeedsCompilation: yes
Packaged: 2019-04-23 16:06:44 UTC; Usr
Repository: CRAN
Date/Publication: 2019-04-25 08:30:02 UTC

More information about DataViz at CRAN
Permanent link

New package AzureKusto with initial version 1.0.1
Package: AzureKusto
Title: Interface to 'Kusto'/'Azure Data Explorer'
Version: 1.0.1
Authors@R: c( person("Hong", "Ooi", , "hongooi@microsoft.com", role = c("aut", "cre")), person("Alex", "Kyllo", , "jekyllo@microsoft.com", role = "aut"), person("dbplyr development team", role="cph", comment="Original framework for dplyr/database interface"), person("Microsoft", role = "cph") )
Description: An interface to 'Azure Data Explorer', also known as 'Kusto', a fast, highly scalable data exploration service from Microsoft: <https://azure.microsoft.com/en-us/services/data-explorer/>. Includes 'DBI' and 'dplyr' interfaces, with the latter modelled after the 'dbplyr' package, whereby queries are translated from R into the native 'KQL' query language and executed lazily. On the admin side, the package extends the object framework provided by 'AzureRMR' to support creation and deletion of databases, and management of database principals.
URL: https://github.com/cloudyr/AzureKusto
BugReports: https://github.com/cloudyr/AzureKusto/issues
License: MIT + file LICENSE
Encoding: UTF-8
VignetteBuilder: knitr
Depends: R (>= 3.3)
Imports: rlang, methods, utils, httr (>= 1.3), jsonlite, R6, openssl, AzureAuth, AzureRMR (>= 2.0.0), tibble, dplyr, tidyselect (>= 0.2.4), DBI (>= 1.0.0)
Suggests: bit64, knitr, testthat, AzureGraph, AzureStor (>= 2.0.0), rmarkdown
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-04-23 21:36:58 UTC; hongo
Author: Hong Ooi [aut, cre], Alex Kyllo [aut], dbplyr development team [cph] (Original framework for dplyr/database interface), Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Repository: CRAN
Date/Publication: 2019-04-25 08:50:08 UTC

More information about AzureKusto at CRAN
Permanent link

Package umx updated to version 2.10.0 with previous version 2.9.9 dated 2019-01-18

Title: Structural Equation and Twin Modeling in R
Description: Quickly create, run, and report structural equation and twin models. See '?umx' for help, and umx_open_CRAN_page("umx") for NEWS.
Author: Timothy C Bates [aut, cre] (<https://orcid.org/0000-0002-1153-9007>)
Maintainer: Timothy C Bates <timothy.c.bates@gmail.com>

Diff between umx versions 2.9.9 dated 2019-01-18 and 2.10.0 dated 2019-04-25

 umx-2.10.0/umx/DESCRIPTION                               |   18 
 umx-2.10.0/umx/INSTALL                                   |    6 
 umx-2.10.0/umx/MD5                                       |  475 ++---
 umx-2.10.0/umx/NAMESPACE                                 |   37 
 umx-2.10.0/umx/NEWS.md                                   |  234 +-
 umx-2.10.0/umx/R/TRHG_code.R                             |only
 umx-2.10.0/umx/R/build_run_modify.R                      |only
 umx-2.10.0/umx/R/datasets.R                              |   61 
 umx-2.10.0/umx/R/deprecated.R                            |  264 ---
 umx-2.10.0/umx/R/deprecated_old_twin_versions.R          |only
 umx-2.10.0/umx/R/fit_and_reporting.R                     |only
 umx-2.10.0/umx/R/lavanify2ram.R                          |only
 umx-2.10.0/umx/R/misc_and_utility.R                      | 1286 +++++++++------
 umx-2.10.0/umx/R/tmx.R                                   |  132 -
 umx-2.10.0/umx/R/umxACEnew.R                             |  170 +
 umx-2.10.0/umx/R/umxIPnew.R                              |only
 umx-2.10.0/umx/R/umx_build_high_level_models.R           |    6 
 umx-2.10.0/umx/R/umx_build_polychoricMatrix3.R           |  139 +
 umx-2.10.0/umx/R/umx_build_umxACEcov_fixed.R             |   28 
 umx-2.10.0/umx/R/umx_build_umxACEv.R                     |   49 
 umx-2.10.0/umx/R/umx_build_umxGxEbiv.R                   |   14 
 umx-2.10.0/umx/R/umx_build_umxSexLim.R                   |  764 ++++++--
 umx-2.10.0/umx/R/umx_build_umxSimplex.R                  |   22 
 umx-2.10.0/umx/R/umx_fit_stash_CIs.R                     |    8 
 umx-2.10.0/umx/R/umx_fit_umxFitIndices.R                 |    2 
 umx-2.10.0/umx/R/xmu.R                                   |only
 umx-2.10.0/umx/R/xmu_make_top_twin_models.R              |  500 ++---
 umx-2.10.0/umx/README.md                                 |   25 
 umx-2.10.0/umx/data/Fischbein_wt.rda                     |only
 umx-2.10.0/umx/inst/CITATION                             |   19 
 umx-2.10.0/umx/inst/WORDLIST                             |   26 
 umx-2.10.0/umx/man/Fischbein_wt.Rd                       |only
 umx-2.10.0/umx/man/GFF.Rd                                |    7 
 umx-2.10.0/umx/man/RMSEA.MxModel.Rd                      |    5 
 umx-2.10.0/umx/man/RMSEA.Rd                              |    5 
 umx-2.10.0/umx/man/RMSEA.summary.mxmodel.Rd              |    2 
 umx-2.10.0/umx/man/extractAIC.MxModel.Rd                 |    2 
 umx-2.10.0/umx/man/figures/CP.pdf                        |binary
 umx-2.10.0/umx/man/figures/CP.png                        |binary
 umx-2.10.0/umx/man/figures/IP.pdf                        |binary
 umx-2.10.0/umx/man/figures/IP.png                        |binary
 umx-2.10.0/umx/man/figures/umx_help_figures.graffle      |binary
 umx-2.10.0/umx/man/install.OpenMx.Rd                     |   13 
 umx-2.10.0/umx/man/iqdat.Rd                              |    3 
 umx-2.10.0/umx/man/loadings.MxModel.Rd                   |   11 
 umx-2.10.0/umx/man/loadings.Rd                           |    2 
 umx-2.10.0/umx/man/plot.MxLISRELModel.Rd                 |only
 umx-2.10.0/umx/man/plot.MxModel.Rd                       |   55 
 umx-2.10.0/umx/man/qm.Rd                                 |   13 
 umx-2.10.0/umx/man/reliability.Rd                        |    1 
 umx-2.10.0/umx/man/residuals.MxModel.Rd                  |   27 
 umx-2.10.0/umx/man/tmx_genotypic_effect.Rd               |   91 -
 umx-2.10.0/umx/man/tmx_is.identified.Rd                  |    9 
 umx-2.10.0/umx/man/tmx_show.Rd                           |only
 umx-2.10.0/umx/man/umx.Rd                                |   85 
 umx-2.10.0/umx/man/umxACE.Rd                             |  185 +-
 umx-2.10.0/umx/man/umxACE_cov_fixed.Rd                   |   15 
 umx-2.10.0/umx/man/umxACEcov.Rd                          |   26 
 umx-2.10.0/umx/man/umxACEold.Rd                          |only
 umx-2.10.0/umx/man/umxACEv.Rd                            |   40 
 umx-2.10.0/umx/man/umxAPA.Rd                             |   11 
 umx-2.10.0/umx/man/umxAdd1.Rd                            |    2 
 umx-2.10.0/umx/man/umxAlgebra.Rd                         |   12 
 umx-2.10.0/umx/man/umxBrownie.Rd                         |   13 
 umx-2.10.0/umx/man/umxCI.Rd                              |    2 
 umx-2.10.0/umx/man/umxCI_boot.Rd                         |   26 
 umx-2.10.0/umx/man/umxCP.Rd                              |   77 
 umx-2.10.0/umx/man/umxCPold.Rd                           |   14 
 umx-2.10.0/umx/man/umxCompare.Rd                         |    2 
 umx-2.10.0/umx/man/umxConfint.Rd                         |    2 
 umx-2.10.0/umx/man/umxCov2cor.Rd                         |   14 
 umx-2.10.0/umx/man/umxCovData.Rd                         |    3 
 umx-2.10.0/umx/man/umxDescribeDataWLS.Rd                 |only
 umx-2.10.0/umx/man/umxDiagnose.Rd                        |   26 
 umx-2.10.0/umx/man/umxDrop1.Rd                           |    2 
 umx-2.10.0/umx/man/umxEFA.Rd                             |    3 
 umx-2.10.0/umx/man/umxEquate.Rd                          |    6 
 umx-2.10.0/umx/man/umxEval.Rd                            |    9 
 umx-2.10.0/umx/man/umxExamples.Rd                        |only
 umx-2.10.0/umx/man/umxExpCov.Rd                          |   18 
 umx-2.10.0/umx/man/umxExpMeans.Rd                        |   18 
 umx-2.10.0/umx/man/umxFactor.Rd                          |   13 
 umx-2.10.0/umx/man/umxFactorScores.Rd                    |   13 
 umx-2.10.0/umx/man/umxFixAll.Rd                          |    2 
 umx-2.10.0/umx/man/umxGetParameters.Rd                   |   15 
 umx-2.10.0/umx/man/umxGxE.Rd                             |   13 
 umx-2.10.0/umx/man/umxGxE_window.Rd                      |    6 
 umx-2.10.0/umx/man/umxGxEbiv.Rd                          |   11 
 umx-2.10.0/umx/man/umxHetCor.Rd                          |    1 
 umx-2.10.0/umx/man/umxIP.Rd                              |  166 +
 umx-2.10.0/umx/man/umxIPold.Rd                           |only
 umx-2.10.0/umx/man/umxJiggle.Rd                          |    2 
 umx-2.10.0/umx/man/umxLabel.Rd                           |   12 
 umx-2.10.0/umx/man/umxLatent.Rd                          |    4 
 umx-2.10.0/umx/man/umxLav2RAM.Rd                         |only
 umx-2.10.0/umx/man/umxMI.Rd                              |    2 
 umx-2.10.0/umx/man/umxMatrix.Rd                          |   43 
 umx-2.10.0/umx/man/umxModel.Rd                           |   10 
 umx-2.10.0/umx/man/umxModify.Rd                          |   16 
 umx-2.10.0/umx/man/umxPadAndPruneForDefVars.Rd           |    1 
 umx-2.10.0/umx/man/umxPath.Rd                            |   12 
 umx-2.10.0/umx/man/umxPlotACE.Rd                         |   15 
 umx-2.10.0/umx/man/umxPlotACEcov.Rd                      |   15 
 umx-2.10.0/umx/man/umxPlotACEv.Rd                        |   13 
 umx-2.10.0/umx/man/umxPlotCP.Rd                          |   36 
 umx-2.10.0/umx/man/umxPlotCPold.Rd                       |only
 umx-2.10.0/umx/man/umxPlotGxE.Rd                         |   15 
 umx-2.10.0/umx/man/umxPlotGxEbiv.Rd                      |   13 
 umx-2.10.0/umx/man/umxPlotIP.Rd                          |   17 
 umx-2.10.0/umx/man/umxPlotSexLim.Rd                      |only
 umx-2.10.0/umx/man/umxPlotSimplex.Rd                     |   11 
 umx-2.10.0/umx/man/umxRAM.Rd                             |  170 +
 umx-2.10.0/umx/man/umxRAM2.Rd                            |only
 umx-2.10.0/umx/man/umxRAM2Ordinal.Rd                     |   19 
 umx-2.10.0/umx/man/umxReduce.Rd                          |   22 
 umx-2.10.0/umx/man/umxReduceACE.Rd                       |    5 
 umx-2.10.0/umx/man/umxReduceGxE.Rd                       |    5 
 umx-2.10.0/umx/man/umxRun.Rd                             |   23 
 umx-2.10.0/umx/man/umxSetParameters.Rd                   |    2 
 umx-2.10.0/umx/man/umxSexLim.Rd                          |  204 +-
 umx-2.10.0/umx/man/umxSimplex.Rd                         |    8 
 umx-2.10.0/umx/man/umxSummarizeTwinData.Rd               |    7 
 umx-2.10.0/umx/man/umxSummary.MxModel.Rd                 |    2 
 umx-2.10.0/umx/man/umxSummary.Rd                         |   19 
 umx-2.10.0/umx/man/umxSummaryACE.Rd                      |    6 
 umx-2.10.0/umx/man/umxSummaryACEcov.Rd                   |    6 
 umx-2.10.0/umx/man/umxSummaryACEv.Rd                     |    4 
 umx-2.10.0/umx/man/umxSummaryCP.Rd                       |    6 
 umx-2.10.0/umx/man/umxSummaryGxE.Rd                      |    6 
 umx-2.10.0/umx/man/umxSummaryGxEbiv.Rd                   |    4 
 umx-2.10.0/umx/man/umxSummaryIP.Rd                       |    6 
 umx-2.10.0/umx/man/umxSummarySexLim.Rd                   |   61 
 umx-2.10.0/umx/man/umxSummarySimplex.Rd                  |    4 
 umx-2.10.0/umx/man/umxSuperModel.Rd                      |   16 
 umx-2.10.0/umx/man/umxThresholdMatrix.Rd                 |   10 
 umx-2.10.0/umx/man/umxTwoStage.Rd                        |    1 
 umx-2.10.0/umx/man/umxUnexplainedCausalNexus.Rd          |    2 
 umx-2.10.0/umx/man/umxValues.Rd                          |    9 
 umx-2.10.0/umx/man/umxVersion.Rd                         |   13 
 umx-2.10.0/umx/man/umxWeightedAIC.Rd                     |   18 
 umx-2.10.0/umx/man/umx_APA_pval.Rd                       |   16 
 umx-2.10.0/umx/man/umx_aggregate.Rd                      |   12 
 umx-2.10.0/umx/man/umx_array_shift.Rd                    |   13 
 umx-2.10.0/umx/man/umx_as_numeric.Rd                     |    1 
 umx-2.10.0/umx/man/umx_cell_is_on.Rd                     |   21 
 umx-2.10.0/umx/man/umx_check_model.Rd                    |   15 
 umx-2.10.0/umx/man/umx_cont_2_quantiles.Rd               |   13 
 umx-2.10.0/umx/man/umx_cov2raw.Rd                        |    1 
 umx-2.10.0/umx/man/umx_default_option.Rd                 |    1 
 umx-2.10.0/umx/man/umx_dot_define_shapes.Rd              |only
 umx-2.10.0/umx/man/umx_dot_mat2dot.Rd                    |only
 umx-2.10.0/umx/man/umx_dot_rank.Rd                       |only
 umx-2.10.0/umx/man/umx_find_object.Rd                    |    5 
 umx-2.10.0/umx/man/umx_fix_first_loadings.Rd             |   38 
 umx-2.10.0/umx/man/umx_fix_latents.Rd                    |   20 
 umx-2.10.0/umx/man/umx_fun_mean_sd.Rd                    |    2 
 umx-2.10.0/umx/man/umx_get_bracket_addresses.Rd          |   17 
 umx-2.10.0/umx/man/umx_get_checkpoint.Rd                 |    1 
 umx-2.10.0/umx/man/umx_get_options.Rd                    |    1 
 umx-2.10.0/umx/man/umx_has_CIs.Rd                        |   16 
 umx-2.10.0/umx/man/umx_has_been_run.Rd                   |   14 
 umx-2.10.0/umx/man/umx_has_means.Rd                      |   15 
 umx-2.10.0/umx/man/umx_is_RAM.Rd                         |   17 
 umx-2.10.0/umx/man/umx_is_cov.Rd                         |    2 
 umx-2.10.0/umx/man/umx_lower2full.Rd                     |    1 
 umx-2.10.0/umx/man/umx_make.Rd                           |   16 
 umx-2.10.0/umx/man/umx_make_MR_data.Rd                   |    1 
 umx-2.10.0/umx/man/umx_make_TwinData.Rd                  |    1 
 umx-2.10.0/umx/man/umx_make_bin_cont_pair_data.Rd        |    1 
 umx-2.10.0/umx/man/umx_make_fake_data.Rd                 |    1 
 umx-2.10.0/umx/man/umx_make_sql_from_excel.Rd            |   10 
 umx-2.10.0/umx/man/umx_merge_CIs.Rd                      |    1 
 umx-2.10.0/umx/man/umx_msg.Rd                            |    6 
 umx-2.10.0/umx/man/umx_names.Rd                          |   19 
 umx-2.10.0/umx/man/umx_open_CRAN_page.Rd                 |   11 
 umx-2.10.0/umx/man/umx_pad.Rd                            |    8 
 umx-2.10.0/umx/man/umx_parameters.Rd                     |   12 
 umx-2.10.0/umx/man/umx_pb_note.Rd                        |   11 
 umx-2.10.0/umx/man/umx_polychoric.Rd                     |   17 
 umx-2.10.0/umx/man/umx_polypairwise.Rd                   |   16 
 umx-2.10.0/umx/man/umx_polytriowise.Rd                   |   15 
 umx-2.10.0/umx/man/umx_print.Rd                          |   21 
 umx-2.10.0/umx/man/umx_r_test.Rd                         |    2 
 umx-2.10.0/umx/man/umx_read_lower.Rd                     |   30 
 umx-2.10.0/umx/man/umx_rename.Rd                         |    5 
 umx-2.10.0/umx/man/umx_reorder.Rd                        |    1 
 umx-2.10.0/umx/man/umx_scale.Rd                          |   11 
 umx-2.10.0/umx/man/umx_score_scale.Rd                    |   43 
 umx-2.10.0/umx/man/umx_set_auto_plot.Rd                  |    1 
 umx-2.10.0/umx/man/umx_set_auto_run.Rd                   |    1 
 umx-2.10.0/umx/man/umx_set_checkpoint.Rd                 |    1 
 umx-2.10.0/umx/man/umx_set_condensed_slots.Rd            |    1 
 umx-2.10.0/umx/man/umx_set_cores.Rd                      |    1 
 umx-2.10.0/umx/man/umx_set_data_variance_check.Rd        |only
 umx-2.10.0/umx/man/umx_set_optimization_options.Rd       |    1 
 umx-2.10.0/umx/man/umx_set_optimizer.Rd                  |    1 
 umx-2.10.0/umx/man/umx_set_plot_file_suffix.Rd           |    1 
 umx-2.10.0/umx/man/umx_set_plot_format.Rd                |    1 
 umx-2.10.0/umx/man/umx_set_table_format.Rd               |    1 
 umx-2.10.0/umx/man/umx_show_fit_or_comparison.Rd         |   10 
 umx-2.10.0/umx/man/umx_stack.Rd                          |    1 
 umx-2.10.0/umx/man/umx_standardize_ACE.Rd                |    1 
 umx-2.10.0/umx/man/umx_standardize_ACEcov.Rd             |    1 
 umx-2.10.0/umx/man/umx_standardize_ACEv.Rd               |    1 
 umx-2.10.0/umx/man/umx_standardize_CP.Rd                 |    1 
 umx-2.10.0/umx/man/umx_standardize_IP.Rd                 |    1 
 umx-2.10.0/umx/man/umx_standardize_RAM.Rd                |   23 
 umx-2.10.0/umx/man/umx_standardize_SexLim.Rd             |only
 umx-2.10.0/umx/man/umx_standardize_Simplex.Rd            |    1 
 umx-2.10.0/umx/man/umx_stash_CIs.Rd                      |    7 
 umx-2.10.0/umx/man/umx_string_to_algebra.Rd              |    2 
 umx-2.10.0/umx/man/umx_swap_a_block.Rd                   |    1 
 umx-2.10.0/umx/man/umx_time.Rd                           |    8 
 umx-2.10.0/umx/man/umx_trim.Rd                           |   13 
 umx-2.10.0/umx/man/us_skinfold_data.Rd                   |    9 
 umx-2.10.0/umx/man/xmuHasSquareBrackets.Rd               |   10 
 umx-2.10.0/umx/man/xmuLabel_MATRIX_Model.Rd              |   10 
 umx-2.10.0/umx/man/xmuLabel_Matrix.Rd                    |   10 
 umx-2.10.0/umx/man/xmuLabel_RAM_Model.Rd                 |   22 
 umx-2.10.0/umx/man/xmuMI.Rd                              |   10 
 umx-2.10.0/umx/man/xmuMakeDeviationThresholdsMatrices.Rd |   10 
 umx-2.10.0/umx/man/xmuMakeOneHeadedPathsFromPathList.Rd  |   10 
 umx-2.10.0/umx/man/xmuMakeTwoHeadedPathsFromPathList.Rd  |   10 
 umx-2.10.0/umx/man/xmuMaxLevels.Rd                       |   10 
 umx-2.10.0/umx/man/xmuMinLevels.Rd                       |   10 
 umx-2.10.0/umx/man/xmuPropagateLabels.Rd                 |   10 
 umx-2.10.0/umx/man/xmu_assemble_twin_supermodel.Rd       |   14 
 umx-2.10.0/umx/man/xmu_check_levels_identical.Rd         |   10 
 umx-2.10.0/umx/man/xmu_check_variance.Rd                 |only
 umx-2.10.0/umx/man/xmu_clean_label.Rd                    |only
 umx-2.10.0/umx/man/xmu_dot_make_paths.Rd                 |   17 
 umx-2.10.0/umx/man/xmu_dot_make_residuals.Rd             |   17 
 umx-2.10.0/umx/man/xmu_dot_maker.Rd                      |   39 
 umx-2.10.0/umx/man/xmu_dot_move_ranks.Rd                 |only
 umx-2.10.0/umx/man/xmu_dot_rank_str.Rd                   |only
 umx-2.10.0/umx/man/xmu_get_CI.Rd                         |only
 umx-2.10.0/umx/man/xmu_lavaan_process_group.Rd           |only
 umx-2.10.0/umx/man/xmu_make_mxData.Rd                    |   46 
 umx-2.10.0/umx/man/xmu_make_top_twin.Rd                  |only
 umx-2.10.0/umx/man/xmu_model_needs_means.Rd              |only
 umx-2.10.0/umx/man/xmu_safe_run_summary.Rd               |   14 
 umx-2.10.0/umx/man/xmu_set_sep_from_suffix.Rd            |   10 
 umx-2.10.0/umx/man/xmu_simplex_corner.Rd                 |   10 
 umx-2.10.0/umx/man/xmu_start_value_list.Rd               |   10 
 umx-2.10.0/umx/man/xmu_starts.Rd                         |   12 
 umx-2.10.0/umx/man/xmu_twin_check.Rd                     |    7 
 umx-2.10.0/umx/tests/testthat/test_umx_rename.r          |    2 
 umx-2.10.0/umx/tests/testthat/test_xmu_make_mxData.r     |only
 umx-2.9.9/umx/R/build_run_modify.r                       |only
 umx-2.9.9/umx/R/fit_and_reporting.r                      |only
 umx-2.9.9/umx/R/umx_fit_umxPlotCPnew.R                   |only
 umx-2.9.9/umx/R/xmu.r                                    |only
 umx-2.9.9/umx/R/xmu_mean_var_starts.R                    |only
 umx-2.9.9/umx/man/umxACEnew.Rd                           |only
 umx-2.9.9/umx/man/umxIPnew.Rd                            |only
 umx-2.9.9/umx/man/umxPlotCPnew.Rd                        |only
 umx-2.9.9/umx/man/umx_APA_model_CI.Rd                    |only
 umx-2.9.9/umx/man/umx_add_variances.Rd                   |only
 umx-2.9.9/umx/man/umx_graphviz_rank.Rd                   |only
 umx-2.9.9/umx/man/umx_mat2dot.Rd                         |only
 umx-2.9.9/umx/man/umx_show.Rd                            |only
 umx-2.9.9/umx/man/xmu_make_top_twin_models.Rd            |only
 262 files changed, 4278 insertions(+), 2920 deletions(-)

More information about umx at CRAN
Permanent link

New package tidymv with initial version 2.1.0
Package: tidymv
Type: Package
Title: Tidy Model Visualisation for Generalised Additive Models
Version: 2.1.0
Date: 2019-04-23
Authors@R: person("Stefano", "Coretta", email = paste0("stefano.coretta", "@", "gmail.com"), role = c("aut", "cre"))
Description: Provides functions for visualising generalised additive models and getting predicted values using tidy tools from the 'tidyverse' packages.
URL: https://github.com/stefanocoretta/tidymv
BugReports: https://github.com/stefanocoretta/tidymv/issues
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Imports: cowplot, dplyr, ggplot2, itsadug, magrittr, mgcv, rlang, tibble, tidyr
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Language: en_GB
NeedsCompilation: no
Packaged: 2019-04-23 13:52:10 UTC; stefano
Author: Stefano Coretta [aut, cre]
Maintainer: Stefano Coretta <stefano.coretta@gmail.com>
Repository: CRAN
Date/Publication: 2019-04-25 08:00:25 UTC

More information about tidymv at CRAN
Permanent link

Package excerptr updated to version 2.0.0 with previous version 1.4.1 dated 2018-06-03

Title: Excerpt Structuring Comments from Your Code File and Set a Table of Contents
Description: This is an R interface to the python package 'excerpts' (<https://pypi.python.org/pypi/excerpts>).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>

Diff between excerptr versions 1.4.1 dated 2018-06-03 and 2.0.0 dated 2019-04-25

 excerptr-1.4.1/excerptr/R/get_excerpts.R                          |only
 excerptr-1.4.1/excerptr/R/internals.R                             |only
 excerptr-1.4.1/excerptr/R/options.R                               |only
 excerptr-1.4.1/excerptr/R/utils.R                                 |only
 excerptr-1.4.1/excerptr/inst/doc/excerptr_Introduction.R          |only
 excerptr-1.4.1/excerptr/inst/doc/excerptr_Introduction.Rmd        |only
 excerptr-1.4.1/excerptr/inst/doc/excerptr_Introduction.html       |only
 excerptr-1.4.1/excerptr/inst/tests/testthat                       |only
 excerptr-1.4.1/excerptr/inst/tests/testthat.R                     |only
 excerptr-1.4.1/excerptr/man/concatenate_python_codes.Rd           |only
 excerptr-1.4.1/excerptr/man/construct_path.Rd                     |only
 excerptr-1.4.1/excerptr/man/get_excerpts.Rd                       |only
 excerptr-1.4.1/excerptr/man/get_excerpts_path.Rd                  |only
 excerptr-1.4.1/excerptr/man/load_excerpts.Rd                      |only
 excerptr-1.4.1/excerptr/man/set_excertps_path.Rd                  |only
 excerptr-1.4.1/excerptr/tests/files                               |only
 excerptr-1.4.1/excerptr/tests/testthat/test_basic.R               |only
 excerptr-1.4.1/excerptr/vignettes/excerptr_Introduction.Rmd       |only
 excerptr-2.0.0/excerptr/DESCRIPTION                               |   26 +-
 excerptr-2.0.0/excerptr/MD5                                       |   54 ++----
 excerptr-2.0.0/excerptr/NAMESPACE                                 |    2 
 excerptr-2.0.0/excerptr/NEWS.md                                   |    8 
 excerptr-2.0.0/excerptr/R/excerptr-package.R                      |    4 
 excerptr-2.0.0/excerptr/R/excerptr.R                              |   88 +++-------
 excerptr-2.0.0/excerptr/R/throw.R                                 |only
 excerptr-2.0.0/excerptr/R/zzz.R                                   |   10 -
 excerptr-2.0.0/excerptr/README.md                                 |   78 ++------
 excerptr-2.0.0/excerptr/build/vignette.rds                        |binary
 excerptr-2.0.0/excerptr/inst/doc/An_Introduction_to_excerptr.R    |only
 excerptr-2.0.0/excerptr/inst/doc/An_Introduction_to_excerptr.Rmd  |only
 excerptr-2.0.0/excerptr/inst/doc/An_Introduction_to_excerptr.html |only
 excerptr-2.0.0/excerptr/inst/runit_tests                          |only
 excerptr-2.0.0/excerptr/inst/tests/files/some_file.tex            |only
 excerptr-2.0.0/excerptr/inst/tests/runit.R                        |only
 excerptr-2.0.0/excerptr/man/excerptr-package.Rd                   |    5 
 excerptr-2.0.0/excerptr/man/excerptr.Rd                           |   20 +-
 excerptr-2.0.0/excerptr/man/throw.Rd                              |only
 excerptr-2.0.0/excerptr/tests/runit.R                             |only
 excerptr-2.0.0/excerptr/tests/testthat.R                          |    5 
 excerptr-2.0.0/excerptr/tests/testthat/test-basic.R               |only
 excerptr-2.0.0/excerptr/tests/testthat/test-throw.R               |only
 excerptr-2.0.0/excerptr/vignettes/An_Introduction_to_excerptr.Rmd |only
 42 files changed, 108 insertions(+), 192 deletions(-)

More information about excerptr at CRAN
Permanent link

Package encryptr updated to version 0.1.3 with previous version 0.1.2 dated 2019-03-25

Title: Easily Encrypt and Decrypt Data Frame/Tibble Columns or Files using RSA Public/Private Keys
Description: It is important to ensure that sensitive data is protected. This straightforward package is aimed at the end-user. Strong RSA encryption using a public/private key pair is used to encrypt data frame or tibble columns. A public key can be shared to allow others to encrypt data to be sent to you. This is particularly aimed a healthcare settings so patient data can be pseudonymised.
Author: Cameron Fairfield [aut], Riinu Ots [aut], Stephen Knight [aut], Tom Drake [aut], Ewen Harrison [aut, cre]
Maintainer: Ewen Harrison <ewen.harrison@ed.ac.uk>

Diff between encryptr versions 0.1.2 dated 2019-03-25 and 0.1.3 dated 2019-04-25

 encryptr-0.1.2/encryptr/R/finalencrypt-internal_functions.R    |only
 encryptr-0.1.3/encryptr/DESCRIPTION                            |   10 -
 encryptr-0.1.3/encryptr/MD5                                    |   37 +++---
 encryptr-0.1.3/encryptr/NAMESPACE                              |    2 
 encryptr-0.1.3/encryptr/NEWS.md                                |    5 
 encryptr-0.1.3/encryptr/R/decrypt.R                            |   28 +++-
 encryptr-0.1.3/encryptr/R/decrypt_file.R                       |only
 encryptr-0.1.3/encryptr/R/encrypt.R                            |   22 ++-
 encryptr-0.1.3/encryptr/R/encrypt_file.R                       |only
 encryptr-0.1.3/encryptr/R/encryptr-internal_functions.R        |only
 encryptr-0.1.3/encryptr/R/genkeys.R                            |   13 ++
 encryptr-0.1.3/encryptr/README.md                              |   59 ++++++++--
 encryptr-0.1.3/encryptr/man/assign_to_global.Rd                |    2 
 encryptr-0.1.3/encryptr/man/decrypt.Rd                         |   26 +++-
 encryptr-0.1.3/encryptr/man/decrypt_file.Rd                    |only
 encryptr-0.1.3/encryptr/man/encrypt.Rd                         |   20 ++-
 encryptr-0.1.3/encryptr/man/encrypt_file.Rd                    |only
 encryptr-0.1.3/encryptr/man/genkeys.Rd                         |    3 
 encryptr-0.1.3/encryptr/man/hex2raw.Rd                         |    2 
 encryptr-0.1.3/encryptr/man/pipe.Rd                            |    2 
 encryptr-0.1.3/encryptr/man/raw2hex.Rd                         |    2 
 encryptr-0.1.3/encryptr/tests/testthat/tests-encrypt_decrypt.R |only
 encryptr-0.1.3/encryptr/tests/testthat/tests-genkeys.R         |    5 
 23 files changed, 176 insertions(+), 62 deletions(-)

More information about encryptr at CRAN
Permanent link

Package CoRpower updated to version 1.0.1 with previous version 1.0.0 dated 2018-10-06

Title: Power Calculations for Assessing Correlates of Risk in Clinical Efficacy Trials
Description: Calculates power for assessment of intermediate biomarker responses as correlates of risk in the active treatment group in clinical efficacy trials, as described in Gilbert, Janes, and Huang, Power/Sample Size Calculations for Assessing Correlates of Risk in Clinical Efficacy Trials (2016, Statistics in Medicine). The methods differ from past approaches by accounting for the level of clinical treatment efficacy overall and in biomarker response subgroups, which enables the correlates of risk results to be interpreted in terms of potential correlates of efficacy/protection. The methods also account for inter-individual variability of the observed biomarker response that is not biologically relevant (e.g., due to technical measurement error of the laboratory assay used to measure the biomarker response), which is important because power to detect a specified correlate of risk effect size is heavily affected by the biomarker's measurement error. The methods can be used for a general binary clinical endpoint model with a univariate dichotomous, trichotomous, or continuous biomarker response measured in active treatment recipients at a fixed timepoint after randomization, with either case-cohort Bernoulli sampling or case-control without-replacement sampling of the biomarker (a baseline biomarker is handled as a trivial special case). In a specified two-group trial design, the computeN() function can initially be used for calculating additional requisite design parameters pertaining to the target population of active treatment recipients observed to be at risk at the biomarker sampling timepoint. Subsequently, the power calculation employs an inverse probability weighted logistic regression model fitted by the tps() function in the 'osDesign' package. Power results as well as the relationship between the correlate of risk effect size and treatment efficacy can be visualized using various plotting functions. To link power calculations for detecting a correlate of risk and a correlate of treatment efficacy, a baseline immunogenicity predictor (BIP) can be simulated according to a specified classification rule (for dichotomous or trichotomous BIPs) or correlation with the biomarker response (for continuous BIPs), then outputted along with biomarker response data under assignment to treatment, and clinical endpoint data for both treatment and placebo groups.
Author: Stephanie Wu [aut], Michal Juraska [aut, cre], Peter Gilbert [aut], Yunda Huang [aut]
Maintainer: Michal Juraska <mjuraska@fredhutch.org>

Diff between CoRpower versions 1.0.0 dated 2018-10-06 and 1.0.1 dated 2019-04-25

 CoRpower-1.0.0/CoRpower/inst/doc/CoRpower.R                                 |only
 CoRpower-1.0.0/CoRpower/inst/doc/CoRpower.Rmd                               |only
 CoRpower-1.0.0/CoRpower/inst/doc/CoRpower.html                              |only
 CoRpower-1.0.0/CoRpower/vignettes/CoRpower.Rmd                              |only
 CoRpower-1.0.1/CoRpower/DESCRIPTION                                         |   18 
 CoRpower-1.0.1/CoRpower/MD5                                                 |   37 
 CoRpower-1.0.1/CoRpower/R/computeN.R                                        |   14 
 CoRpower-1.0.1/CoRpower/R/computePower.R                                    | 1551 ++++++----
 CoRpower-1.0.1/CoRpower/R/plotPowerCont.R                                   |   42 
 CoRpower-1.0.1/CoRpower/R/plotPowerTri.R                                    |   94 
 CoRpower-1.0.1/CoRpower/R/plotRRgradVE.R                                    |   39 
 CoRpower-1.0.1/CoRpower/R/plotVElatCont.R                                   |   35 
 CoRpower-1.0.1/CoRpower/build/vignette.rds                                  |binary
 CoRpower-1.0.1/CoRpower/inst/doc/CoRpowerIntroduction.R                     |only
 CoRpower-1.0.1/CoRpower/inst/doc/CoRpowerIntroduction.Rmd                   |only
 CoRpower-1.0.1/CoRpower/inst/doc/CoRpowerIntroduction.html                  |only
 CoRpower-1.0.1/CoRpower/inst/doc/placeboAndBIPdataSimulationAlgorithms.Rmd  |only
 CoRpower-1.0.1/CoRpower/inst/doc/placeboAndBIPdataSimulationAlgorithms.html |only
 CoRpower-1.0.1/CoRpower/man/computePower.Rd                                 |  264 +
 CoRpower-1.0.1/CoRpower/man/plotPowerCont.Rd                                |   25 
 CoRpower-1.0.1/CoRpower/man/plotPowerTri.Rd                                 |   27 
 CoRpower-1.0.1/CoRpower/man/plotRRgradVE.Rd                                 |   17 
 CoRpower-1.0.1/CoRpower/man/plotVElatCont.Rd                                |   22 
 CoRpower-1.0.1/CoRpower/vignettes/CoRpowerIntroduction.Rmd                  |only
 CoRpower-1.0.1/CoRpower/vignettes/placeboAndBIPdataSimulationAlgorithms.Rmd |only
 25 files changed, 1387 insertions(+), 798 deletions(-)

More information about CoRpower at CRAN
Permanent link

Package rstatscn updated to version 1.1.3 with previous version 1.1.1 dated 2016-07-20

Title: R Interface for China National Data
Description: R interface for china national data <http://data.stats.gov.cn/>, some convenient functions for accessing the national data are provided.
Author: Xuehui YANG
Maintainer: Xuehui YANG <jianghang@bagualu.net>

Diff between rstatscn versions 1.1.1 dated 2016-07-20 and 1.1.3 dated 2019-04-25

 DESCRIPTION                 |   15 -
 MD5                         |   30 +-
 NAMESPACE                   |   21 -
 NEWS.md                     |   52 ++--
 R/rstatscn.R                |  531 ++++++++++++++++++++++----------------------
 README.md                   |   24 -
 man/checkHttpStatus.Rd      |   35 +-
 man/dataJson2df.Rd          |   43 +--
 man/genDfwds.Rd             |   45 +--
 man/milSec.Rd               |   29 +-
 man/statscnDbs.Rd           |   35 +-
 man/statscnQueryData.Rd     |   73 +++---
 man/statscnQueryLastN.Rd    |   47 +--
 man/statscnQueryZb.Rd       |   51 ++--
 man/statscnRegions.Rd       |   47 +--
 man/statscnRowNamePrefix.Rd |   51 ++--
 16 files changed, 576 insertions(+), 553 deletions(-)

More information about rstatscn at CRAN
Permanent link

Package spec updated to version 0.1.7 with previous version 0.1.6 dated 2019-02-04

Title: A Data Specification Format and Interface
Description: Creates a data specification that describes the columns of a table (data.frame). Provides methods to read, write, and update the specification. Checks whether a table matches its specification. See specification.data.frame(),read.spec(), write.spec(), as.csv.spec(), respecify.character(), and %matches%.data.frame().
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>

Diff between spec versions 0.1.6 dated 2019-02-04 and 0.1.7 dated 2019-04-25

 DESCRIPTION                              |    6 ++--
 MD5                                      |   46 +++++++++++++++----------------
 R/spec.R                                 |   40 ++++++++++++++++++++++++++
 man/as.spec.Rd                           |    5 +++
 man/as.spec.character.Rd                 |    5 +++
 man/as.spec.data.frame.Rd                |    5 +++
 man/grapes-matches-grapes-.character.Rd  |    4 ++
 man/grapes-matches-grapes-.data.frame.Rd |    4 ++
 man/grapes-matches-grapes-.spec.Rd       |    5 +++
 man/grapes-matches-grapes.Rd             |    5 +++
 man/guidetext.Rd                         |    2 -
 man/guidetext.spec.Rd                    |    3 ++
 man/read.spec.Rd                         |    5 +++
 man/respecify.Rd                         |    4 ++
 man/respecify.character.Rd               |    4 ++
 man/respecify.spec.Rd                    |    4 ++
 man/specification.Rd                     |    5 +++
 man/specification.comment.Rd             |    5 +++
 man/specification.data.frame.Rd          |    4 ++
 man/specification.default.Rd             |    5 +++
 man/specify.Rd                           |    4 ++
 man/specify.character.Rd                 |    4 ++
 man/specify.data.frame.Rd                |    4 ++
 man/write.spec.Rd                        |    5 +++
 24 files changed, 155 insertions(+), 28 deletions(-)

More information about spec at CRAN
Permanent link

Package rqdatatable updated to version 1.1.5 with previous version 1.1.4 dated 2019-02-25

Title: 'rquery' for 'data.table'
Description: Implements the 'rquery' piped Codd-style query algebra using 'data.table'. This allows for a high-speed in memory implementation of Codd-style data manipulation tools.
Author: John Mount [aut, cre], Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>

Diff between rqdatatable versions 1.1.4 dated 2019-02-25 and 1.1.5 dated 2019-04-25

 DESCRIPTION                         |   12 ++++++------
 MD5                                 |   17 +++++++++++------
 NAMESPACE                           |    3 +++
 NEWS.md                             |    4 ++++
 R/data_table_exports.R              |only
 README.md                           |    4 ++++
 inst/doc/GroupedSampling.html       |    9 ++++++---
 inst/doc/logisticexample.html       |    9 ++++++---
 inst/unit_tests/test_dt_exports.R   |only
 man/layout_to_blocks_data_table.Rd  |only
 man/layout_to_rowrecs_data_table.Rd |only
 man/rbindlist_data_table.Rd         |only
 12 files changed, 40 insertions(+), 18 deletions(-)

More information about rqdatatable at CRAN
Permanent link

Package ROptEst updated to version 1.2.1 with previous version 1.2.0 dated 2019-04-07

Title: Optimally Robust Estimation
Description: Optimally robust estimation in general smoothly parameterized models using S4 classes and methods.
Author: Matthias Kohl [cre, cph], Mykhailo Pupashenko [ctb] (contributed wrapper functions for diagnostic plots), Gerald Kroisandt [ctb] (contributed testing routines), Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>

Diff between ROptEst versions 1.2.0 dated 2019-04-07 and 1.2.1 dated 2019-04-25

 DESCRIPTION             |   16 ++--
 MD5                     |    8 +-
 R/CheckMakeContIC.R     |   32 ++++++---
 inst/NEWS               |   12 +++
 man/0ROptEst-package.Rd |  159 +++++++++++++++++++++++-------------------------
 5 files changed, 124 insertions(+), 103 deletions(-)

More information about ROptEst at CRAN
Permanent link

Package RobAStBase updated to version 1.2.1 with previous version 1.2.0 dated 2019-04-05

Title: Robust Asymptotic Statistics
Description: Base S4-classes and functions for robust asymptotic statistics.
Author: Matthias Kohl [cre, cph, aut], Peter Ruckdeschel [aut, cph], Mykhailo Pupashenko [ctb] (contributed wrapper functions for diagnostic plots), Gerald Kroisandt [ctb] (contributed testing routines), R Core Team [ctb, cph] (for source file 'format.perc')
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>

Diff between RobAStBase versions 1.2.0 dated 2019-04-05 and 1.2.1 dated 2019-04-25

 DESCRIPTION                 |   16 
 MD5                         |   14 
 R/CheckMakeIC.R             |   36 +-
 R/plotWrapper.R             |  305 ++----------------
 inst/NEWS                   |   35 +-
 man/0RobAStBase-package.Rd  |  111 +++---
 man/comparePlot.Rd          |  740 ++++++++++++++++++++++----------------------
 man/internal_GridHelpers.Rd |  128 +++----
 8 files changed, 587 insertions(+), 798 deletions(-)

More information about RobAStBase at CRAN
Permanent link

Package mvSLOUCH updated to version 2.0.5 with previous version 2.0.4 dated 2019-04-11

Title: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
Description: Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F.Hansen (2012) <doi:10.1016/j.jtbi.2012.08.005>.
Author: Krzysztof Bartoszek <krzbar@protonmail.ch>
Maintainer: Krzysztof Bartoszek <krzbar@protonmail.ch>

Diff between mvSLOUCH versions 2.0.4 dated 2019-04-11 and 2.0.5 dated 2019-04-25

 DESCRIPTION                        |    8 ++++----
 MD5                                |   12 ++++++------
 R/regimes.R                        |   10 +++++++++-
 man/estimate.evolutionary.model.Rd |    5 ++++-
 man/mvslouchModel.Rd               |    7 +++++--
 man/ouchModel.Rd                   |    5 ++++-
 man/parametric.bootstrap.Rd        |    5 ++++-
 7 files changed, 36 insertions(+), 16 deletions(-)

More information about mvSLOUCH at CRAN
Permanent link

Package inum updated to version 1.0-1 with previous version 1.0-0 dated 2017-12-12

Title: Interval and Enum-Type Representation of Vectors
Description: Enum-type representation of vectors and representation of intervals, including a method of coercing variables in data frames.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between inum versions 1.0-0 dated 2017-12-12 and 1.0-1 dated 2019-04-25

 DESCRIPTION              |    8 ++++----
 MD5                      |   12 +++++++-----
 R/inum.R                 |    6 +++++-
 inst/NEWS.Rd             |    7 +++++++
 tests/bugfixes.R         |only
 tests/bugfixes.Rout.save |only
 tests/regtest.R          |    1 +
 tests/regtest.Rout.save  |    7 ++++---
 8 files changed, 28 insertions(+), 13 deletions(-)

More information about inum at CRAN
Permanent link

Package finch updated to version 0.3.0 with previous version 0.2.0 dated 2018-01-25

Title: Parse Darwin Core Files
Description: Parse and create Darwin Core (<http://rs.tdwg.org/dwc/>) Simple and Archives. Functionality includes reading and parsing all the files in a Darwin Core Archive, including the datasets and metadata; read and parse simple Darwin Core files; and validation of Darwin Core Archives.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between finch versions 0.2.0 dated 2018-01-25 and 0.3.0 dated 2019-04-25

 DESCRIPTION                    |   13 +++++++------
 MD5                            |   10 +++++-----
 NEWS.md                        |    8 ++++++++
 R/dwca.R                       |    4 ++--
 README.md                      |    1 +
 tests/testthat/test-dwca_get.R |    8 ++++----
 6 files changed, 27 insertions(+), 17 deletions(-)

More information about finch at CRAN
Permanent link

Package dexter updated to version 0.8.5 with previous version 0.8.4 dated 2019-01-02

Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests. Developed at Cito, The Netherlands, with subsidy from the Dutch Ministry of Education, Culture, and Science.
Author: Gunter Maris, Timo Bechger, Jesse Koops, Ivailo Partchev
Maintainer: Ivailo Partchev <partchev@gmail.com>

Diff between dexter versions 0.8.4 dated 2019-01-02 and 0.8.5 dated 2019-04-25

 dexter-0.8.4/dexter/man/design_is_connected.Rd                |only
 dexter-0.8.5/dexter/DESCRIPTION                               |    6 
 dexter-0.8.5/dexter/MD5                                       |   48 +-
 dexter-0.8.5/dexter/NAMESPACE                                 |    3 
 dexter-0.8.5/dexter/NEWS                                      |    8 
 dexter-0.8.5/dexter/R/anon_calibration.R                      |   30 -
 dexter-0.8.5/dexter/R/anon_plausible_values.R                 |    2 
 dexter-0.8.5/dexter/R/data_selection.R                        |   66 ++
 dexter-0.8.5/dexter/R/dexter.R                                |  240 +++++-----
 dexter-0.8.5/dexter/R/enorm.R                                 |   18 
 dexter-0.8.5/dexter/R/equating.R                              |    2 
 dexter-0.8.5/dexter/R/misc.R                                  |   35 +
 dexter-0.8.5/dexter/R/reparam.R                               |   12 
 dexter-0.8.5/dexter/build/vignette.rds                        |binary
 dexter-0.8.5/dexter/inst/doc/Equating.html                    |   25 -
 dexter-0.8.5/dexter/inst/doc/Plausible_Values.html            |   43 -
 dexter-0.8.5/dexter/inst/doc/Test_Individual_differences.html |   19 
 dexter-0.8.5/dexter/inst/doc/data_management.R                |    6 
 dexter-0.8.5/dexter/inst/doc/data_management.Rmd              |   10 
 dexter-0.8.5/dexter/inst/doc/data_management.html             |   20 
 dexter-0.8.5/dexter/inst/doc/dexter.html                      |   23 
 dexter-0.8.5/dexter/inst/doc/profile-plots.html               |   25 -
 dexter-0.8.5/dexter/man/design_as_network.Rd                  |   36 -
 dexter-0.8.5/dexter/man/design_info.Rd                        |only
 dexter-0.8.5/dexter/man/fit_enorm.Rd                          |    3 
 dexter-0.8.5/dexter/vignettes/data_management.Rmd             |   10 
 26 files changed, 401 insertions(+), 289 deletions(-)

More information about dexter at CRAN
Permanent link

Package wrangle updated to version 0.5.2 with previous version 0.5.1 dated 2019-02-04

Title: A Systematic Data Wrangling Idiom
Description: Supports systematic scrutiny, modification, and integration of data. The function status() counts rows that have missing values in grouping columns (returned by na() ), have non-unique combinations of grouping columns (returned by dup() ), and that are not locally sorted (returned by unsorted() ). Functions enumerate() and itemize() give sorted unique combinations of columns, with or without occurrence counts, respectively. Function ignore() drops columns in x that are present in y, and informative() drops columns in x that are entirely NA; constant() returns values that are constant, given a key. Data that have defined unique combinations of grouping values behave more predictably during merge operations.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>

Diff between wrangle versions 0.5.1 dated 2019-02-04 and 0.5.2 dated 2019-04-25

 DESCRIPTION                   |    7 ++---
 MD5                           |   50 +++++++++++++++++++++---------------------
 NAMESPACE                     |    4 +++
 R/wrangle.R                   |   30 +++++++++++++++++++++++++
 man/detect.Rd                 |    4 +++
 man/dup.Rd                    |    2 +
 man/dup.grouped_df.Rd         |    3 ++
 man/dupGroups.Rd              |    3 ++
 man/dupGroups.grouped_df.Rd   |    3 ++
 man/enumerate.Rd              |    4 +++
 man/informative.Rd            |    2 +
 man/informative.data.frame.Rd |    3 ++
 man/itemize.Rd                |    4 +++
 man/key.Rd                    |    3 ++
 man/key.grouped_df.Rd         |    3 ++
 man/na.Rd                     |    2 +
 man/na.grouped_df.Rd          |    3 ++
 man/naGroups.Rd               |    3 ++
 man/naGroups.grouped_df.Rd    |    3 ++
 man/static.Rd                 |    4 +++
 man/status.Rd                 |    3 ++
 man/status.grouped_df.Rd      |    2 +
 man/unsorted.Rd               |    2 +
 man/unsorted.grouped_df.Rd    |    2 +
 man/weak.Rd                   |    2 +
 man/weak.grouped_df.Rd        |    3 ++
 26 files changed, 125 insertions(+), 29 deletions(-)

More information about wrangle at CRAN
Permanent link

Wed, 24 Apr 2019

Package csv updated to version 0.5.3 with previous version 0.5.2 dated 2018-01-08

Title: Read and Write CSV Files with Selected Conventions
Description: Reads and writes CSV with selected conventions. Uses the same generic function for reading and writing to promote consistent formats.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>

Diff between csv versions 0.5.2 dated 2018-01-08 and 0.5.3 dated 2019-04-24

 DESCRIPTION              |    6 +++---
 MD5                      |   10 +++++-----
 R/csv.R                  |    3 +++
 man/as.csv.Rd            |    3 +++
 man/as.csv.character.Rd  |    4 ++++
 man/as.csv.data.frame.Rd |    4 ++++
 6 files changed, 22 insertions(+), 8 deletions(-)

More information about csv at CRAN
Permanent link

Package checkr updated to version 0.5.0 with previous version 0.4.0 dated 2018-11-01

Title: Check the Properties of Common R Objects
Description: Expressive, assertive, pipe-friendly functions to check the properties of common R objects. In the case of failure the functions issue informative error messages.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>)
Maintainer: Joe Thorley <joe@poissonconsulting.ca>

Diff between checkr versions 0.4.0 dated 2018-11-01 and 0.5.0 dated 2019-04-24

 DESCRIPTION                         |   14 +--
 MD5                                 |  127 ++++++++++++++++++------------------
 NAMESPACE                           |    2 
 NEWS.md                             |   11 +++
 R/attributes.R                      |   29 ++++++--
 R/chr.R                             |    4 -
 R/classes.R                         |   10 +-
 R/colnames.R                        |   10 +-
 R/data.R                            |    2 
 R/date.R                            |    4 -
 R/dbl.R                             |   10 +-
 R/dttm.R                            |    4 -
 R/environment.R                     |    2 
 R/err.R                             |only
 R/function.R                        |    2 
 R/grepl.R                           |    4 -
 R/homogenous.R                      |    2 
 R/inherits.R                        |    2 
 R/int.R                             |   10 +-
 R/internal.R                        |   33 ++++++---
 R/intersection.R                    |    4 -
 R/join.R                            |    4 -
 R/key.R                             |   18 +++--
 R/length.R                          |    4 -
 R/levels.R                          |   10 +-
 R/lgl.R                             |    6 -
 R/list.R                            |    2 
 R/logical.R                         |    2 
 R/missing-colnames.R                |    4 -
 R/missing-names.R                   |    4 -
 R/name.R                            |only
 R/named.R                           |    6 -
 R/names.R                           |    8 +-
 R/nchar.R                           |    2 
 R/ncol.R                            |    2 
 R/new-duplicated.R                  |only
 R/nlevels.R                         |    2 
 R/nrow.R                            |    2 
 R/null.R                            |    2 
 R/numeric.R                         |    2 
 R/pattern.R                         |    2 
 R/prob.R                            |    4 -
 R/props.R                           |    2 
 R/rbind.R                           |    9 +-
 R/scalar.R                          |    2 
 R/sorted.R                          |    2 
 R/tzone.R                           |   18 +----
 R/unique.R                          |    2 
 R/unnamed.R                         |    2 
 R/utils.R                           |   16 ----
 R/vector.R                          |   19 +++--
 README.md                           |   21 +----
 build/vignette.rds                  |binary
 inst/doc/assertive-programming.html |  125 ++++++++++++++++++++---------------
 inst/doc/checkr-naming.html         |   15 ++--
 man/check_attributes.Rd             |    6 +
 man/check_key.Rd                    |    5 +
 man/check_name.Rd                   |only
 man/check_no_attributes.Rd          |    7 +
 man/check_tzone.Rd                  |    5 -
 man/check_vector.Rd                 |    8 +-
 tests/testthat/test-attributes.R    |   20 +++++
 tests/testthat/test-key.R           |   20 +++++
 tests/testthat/test-name.R          |only
 tests/testthat/test-named.R         |    2 
 tests/testthat/test-tzone.R         |    4 -
 tests/testthat/test-vector.R        |   35 +++++++++
 67 files changed, 425 insertions(+), 292 deletions(-)

More information about checkr at CRAN
Permanent link

Package nzilbb.labbcat updated to version 0.2-1 with previous version 0.2-0 dated 2019-04-17

Title: Accessing Data Stored in 'LaBB-CAT' Instances
Description: 'LaBB-CAT' is a web-based language corpus management system developed by the New Zealand Institute of Language, Brain and Behaviour (NZILBB) - see <https://labbcat.canterbury.ac.nz>. This package defines functions for accessing corpus data in a 'LaBB-CAT' instance. You must have at least version 20190424.1154 of 'LaBB-CAT' to use this package. For more information about 'LaBB-CAT', see Robert Fromont and Jennifer Hay (2008) <doi:10.3366/E1749503208000142> or Robert Fromont (2017) <doi:10.1016/j.csl.2017.01.004>.
Author: Robert Fromont [aut, cre]
Maintainer: Robert Fromont <robert.fromont@canterbury.ac.nz>

Diff between nzilbb.labbcat versions 0.2-0 dated 2019-04-17 and 0.2-1 dated 2019-04-24

 DESCRIPTION                       |   11 -
 MD5                               |   50 ++---
 NAMESPACE                         |    6 
 R/nzilbb.labbcat.R                |  336 +++++++++++++++++++++++---------------
 build/partial.rdb                 |binary
 man/countAnnotations.Rd           |    4 
 man/getAnchors.Rd                 |    6 
 man/getAnnotationLabels.Rd        |   14 -
 man/getAnnotations.Rd             |    4 
 man/getAvailableMedia.Rd          |    4 
 man/getCorpusIds.Rd               |    9 -
 man/getDictionaries.Rd            |only
 man/getDictionaryEntries.Rd       |only
 man/getGraphIds.Rd                |    9 -
 man/getGraphIdsInCorpus.Rd        |   11 -
 man/getGraphIdsWithParticipant.Rd |    4 
 man/getId.Rd                      |    9 -
 man/getLayer.Rd                   |    9 -
 man/getLayerIds.Rd                |    6 
 man/getLayers.Rd                  |    9 -
 man/getMatchingGraphIds.Rd        |    4 
 man/getMedia.Rd                   |    4 
 man/getMediaTracks.Rd             |    9 -
 man/getParticipantIds.Rd          |    9 -
 man/getSoundFragment.Rd           |   17 -
 man/labbcatCredentials.Rd         |    3 
 man/nzilbb.labbcat.Rd             |   14 -
 27 files changed, 267 insertions(+), 294 deletions(-)

More information about nzilbb.labbcat at CRAN
Permanent link

Package nowcasting updated to version 1.1.0 with previous version 1.0.0 dated 2018-11-27

Title: Predicting Economic Variables using Dynamic Factor Models
Description: It contains the tools to implement dynamic factor models to forecast economic variables. The user will be able to construct pseudo real time vintages, use information criteria for determining the number of factors and shocks, estimate the model, and visualize results among other things.
Author: Daiane Marcolino de Mattos [aut, cre], Pedro Costa Ferreira [aut], Serge de Valk [aut], Guilherme Branco Gomes [aut]
Maintainer: Daiane Marcolino de Mattos <daiane.mattos@fgv.br>

Diff between nowcasting versions 1.0.0 dated 2018-11-27 and 1.1.0 dated 2019-04-24

 DESCRIPTION            |    8 
 MD5                    |   45 -
 NAMESPACE              |  100 +--
 R/Bpanel.R             |  302 +++++------
 R/NYFED.R              |only
 R/method_2s.R          | 1240 ++++++++++++++++++++++++-------------------------
 R/method_EM.r          |  235 ++++-----
 R/nowcast.R            |  438 +++++++++--------
 R/nowcast.plot.R       |    4 
 data/NYFED.rda         |only
 man/BRGDP.Rd           |   44 -
 man/Bpanel.Rd          |  130 ++---
 man/ICfactors.Rd       |   54 +-
 man/ICshocks.Rd        |   62 +-
 man/NYFED.Rd           |only
 man/PRTDB.Rd           |   50 -
 man/RTDB.Rd            |   62 +-
 man/USGDP.Rd           |   50 -
 man/USGDPshort.Rd      |   50 -
 man/base_extraction.Rd |   84 +--
 man/month2qtr.Rd       |   56 +-
 man/nowcast.Rd         |  173 +++---
 man/nowcast.plot.Rd    |   82 +--
 man/nowcasting.Rd      |   68 +-
 man/qtr2month.Rd       |   52 +-
 25 files changed, 1703 insertions(+), 1686 deletions(-)

More information about nowcasting at CRAN
Permanent link

Package gesis updated to version 0.2.2 with previous version 0.2.1 dated 2017-01-30

Title: R Client for GESIS Data Catalogue (DBK)
Description: Provides programmatic access to the GESIS - Leibniz-Institute for the Social Sciences Data Catalogue/Datenbestandkatalog (DBK), which maintains a large repository of data sets related to the social sciences. See <http://www.gesis.org> for more information.
Author: Eric Persson [aut, cre]
Maintainer: Eric Persson <expersso5@gmail.com>

Diff between gesis versions 0.2.1 dated 2017-01-30 and 0.2.2 dated 2019-04-24

 DESCRIPTION              |   12 -
 MD5                      |   18 +-
 R/gesis.R                |   12 +
 build/vignette.rds       |binary
 inst/doc/gesis.html      |  368 ++++++++++++++++++++++++++++++++++++++---------
 man/download_codebook.Rd |    1 
 man/download_dataset.Rd  |    1 
 man/get_datasets.Rd      |    1 
 man/get_study_groups.Rd  |    3 
 man/login.Rd             |    3 
 10 files changed, 327 insertions(+), 92 deletions(-)

More information about gesis at CRAN
Permanent link

Package RTest updated to version 1.2.4 with previous version 1.2.3 dated 2019-01-02

Title: A XML-Based Testing Framework for Automated Component Tests of R Packages
Description: This provides a framework for R packages developed for a regulatory environment. It is based on the 'testthat' unit testing system and provides the adapter functionalities for XML-based test case definition as well as for standardized reporting of the test results.
Author: Sebastian Wolf [aut, cre], Matthias Pfeifer [aut, ctb], Sergej Potapov [ctb], Roche [cph, fnd]
Maintainer: Sebastian Wolf <sebastian@mail-wolf.de>

Diff between RTest versions 1.2.3 dated 2019-01-02 and 1.2.4 dated 2019-04-24

 RTest-1.2.3/RTest/man/as.expectation.logical.Rd                   |only
 RTest-1.2.3/RTest/man/show-RTestCollection-method.Rd              |only
 RTest-1.2.4/RTest/DESCRIPTION                                     |   10 
 RTest-1.2.4/RTest/MD5                                             |  125 
 RTest-1.2.4/RTest/NAMESPACE                                       |  252 
 RTest-1.2.4/RTest/R/RTest-package.R                               |   87 
 RTest-1.2.4/RTest/R/RTestCase.R                                   | 4138 +++++-----
 RTest-1.2.4/RTest/R/RTestCase.test-adapter.R                      |  558 -
 RTest-1.2.4/RTest/R/RTestCollection.R                             | 1876 ++--
 RTest-1.2.4/RTest/R/utils.R                                       |    9 
 RTest-1.2.4/RTest/R/utils.test.R                                  | 3792 ++++-----
 RTest-1.2.4/RTest/R/utils.testthat.R                              |  337 
 RTest-1.2.4/RTest/R/utils.xmlRead.R                               |    3 
 RTest-1.2.4/RTest/build/vignette.rds                              |binary
 RTest-1.2.4/RTest/inst/ChangeLog.txt                              |  341 
 RTest-1.2.4/RTest/inst/doc/RTest-test-adapter.R                   |  190 
 RTest-1.2.4/RTest/inst/doc/RTest-test-adapter.pdf                 |binary
 RTest-1.2.4/RTest/inst/doc/RTest.R                                |   50 
 RTest-1.2.4/RTest/inst/doc/RTest.pdf                              |binary
 RTest-1.2.4/RTest/inst/xml-templates/test.RTM.xml                 |  238 
 RTest-1.2.4/RTest/inst/xml-templates/test.execCache.xml           |  232 
 RTest-1.2.4/RTest/inst/xml-templates/test.execCache2.xml          |   96 
 RTest-1.2.4/RTest/inst/xml-templates/test.large.xml               | 2436 ++---
 RTest-1.2.4/RTest/inst/xml-templates/test.testthat.xml            |   90 
 RTest-1.2.4/RTest/man/RTest.Rd                                    |   62 
 RTest-1.2.4/RTest/man/RTest.execute.Rd                            |    6 
 RTest-1.2.4/RTest/man/RTestCase-class.Rd                          |  124 
 RTest-1.2.4/RTest/man/RTestCase.Rd                                |  258 
 RTest-1.2.4/RTest/man/RTestCollection.Rd                          |only
 RTest-1.2.4/RTest/man/arguments_creator.Rd                        |   70 
 RTest-1.2.4/RTest/man/clearTest.Rd                                |   54 
 RTest-1.2.4/RTest/man/exec.Rd                                     |  124 
 RTest-1.2.4/RTest/man/execAdapter.Rd                              |   90 
 RTest-1.2.4/RTest/man/execCache.Rd                                |  102 
 RTest-1.2.4/RTest/man/expect_less_more.Rd                         |only
 RTest-1.2.4/RTest/man/generic.Rd                                  |  108 
 RTest-1.2.4/RTest/man/getExecDetails.html.Rd                      |   60 
 RTest-1.2.4/RTest/man/getExecStates.Rd                            |   56 
 RTest-1.2.4/RTest/man/getRTM.Rd                                   |   60 
 RTest-1.2.4/RTest/man/getRTMInMatrixShape.Rd                      |   72 
 RTest-1.2.4/RTest/man/getRTMInfos.Rd                              |   68 
 RTest-1.2.4/RTest/man/getValidTCs.Rd                              |   56 
 RTest-1.2.4/RTest/man/importTCsFromDir.Rd                         |   64 
 RTest-1.2.4/RTest/man/quasi_capture.Rd                            |   54 
 RTest-1.2.4/RTest/man/readXMLInputData.Rd                         |   84 
 RTest-1.2.4/RTest/man/show.Rd                                     |only
 RTest-1.2.4/RTest/man/summary-RTestCollection-method.Rd           |   48 
 RTest-1.2.4/RTest/man/test.Rd                                     |  116 
 RTest-1.2.4/RTest/man/test_execution.Rd                           |  112 
 RTest-1.2.4/RTest/man/test_manualCheck_confirmWindow.Rd           |   66 
 RTest-1.2.4/RTest/man/test_manualCheck_file.Rd                    |   66 
 RTest-1.2.4/RTest/man/test_returnValue_any.Rd                     |   56 
 RTest-1.2.4/RTest/man/test_returnValue_data.frame_cellbycell.Rd   |   58 
 RTest-1.2.4/RTest/man/test_returnValue_data.frame_shape.Rd        |  162 
 RTest-1.2.4/RTest/man/test_returnValue_image.Rd                   |  122 
 RTest-1.2.4/RTest/man/test_returnValue_list_nodebynode.Rd         |   58 
 RTest-1.2.4/RTest/man/test_returnValue_variable.Rd                |  120 
 RTest-1.2.4/RTest/man/test_returnValue_vector_elementbyelement.Rd |  118 
 RTest-1.2.4/RTest/man/writeExecSummary.html.Rd                    |   76 
 RTest-1.2.4/RTest/tests/testthat/test.1.read.R                    |   35 
 RTest-1.2.4/RTest/tests/testthat/test.RTestCase.R                 |  190 
 RTest-1.2.4/RTest/tests/testthat/test.RTestCollection.R           |  660 -
 RTest-1.2.4/RTest/tests/testthat/test.testthat.R                  |  436 -
 RTest-1.2.4/RTest/tests/testthat/test.utils.test.R                | 1890 ++--
 RTest-1.2.4/RTest/tests/testthat/test.utils.test.df.R             | 1384 +--
 RTest-1.2.4/RTest/tests/testthat/test.utils.test.list.R           |  528 -
 66 files changed, 11449 insertions(+), 11284 deletions(-)

More information about RTest at CRAN
Permanent link

Package HoRM updated to version 0.1.2 with previous version 0.1.1 dated 2017-03-12

Title: Supplemental Functions and Datasets for "Handbook of Regression Methods"
Description: Supplement for the book "Handbook of Regression Methods" by D. S. Young. Some datasets used in the book are included and documented. Wrapper functions are included that simplify the examples in the textbook, such as code for constructing a regressogram and expanding ANOVA tables to reflect the total sum of squares.
Author: Derek S. Young [aut, cre]
Maintainer: Derek S. Young <derek.young@uky.edu>

Diff between HoRM versions 0.1.1 dated 2017-03-12 and 0.1.2 dated 2019-04-24

 DESCRIPTION          |    8 ++++----
 MD5                  |    8 ++++----
 NEWS                 |    5 +++++
 data/JamesBond.RData |binary
 man/HoRM.package.Rd  |    4 ++--
 5 files changed, 15 insertions(+), 10 deletions(-)

More information about HoRM at CRAN
Permanent link

Package dbx updated to version 0.2.5 with previous version 0.2.4 dated 2019-01-03

Title: A Fast, Easy-to-Use Database Interface
Description: Provides select, insert, update, upsert, and delete database operations. Supports 'PostgreSQL', 'MySQL', 'SQLite', and more, and plays nicely with the 'DBI' package.
Author: Andrew Kane [aut, cre]
Maintainer: Andrew Kane <andrew@chartkick.com>

Diff between dbx versions 0.2.4 dated 2019-01-03 and 0.2.5 dated 2019-04-24

 DESCRIPTION                              |    8 ++++----
 LICENSE                                  |    2 +-
 MD5                                      |   24 ++++++++++++------------
 NEWS.md                                  |    6 ++++++
 R/connect.R                              |   14 +++++++++-----
 R/helpers.R                              |   10 +++++-----
 R/select.R                               |   14 +++++++-------
 R/update.R                               |    4 ++--
 R/upsert.R                               |    2 +-
 README.md                                |   26 ++++++++++++++++++--------
 tests/testthat/helper-run-select-tests.R |   10 ++++++++++
 tests/testthat/helper-run-update-tests.R |   22 ++++++++++++++++++++++
 tests/testthat/helper-run-upsert-tests.R |    3 +++
 13 files changed, 100 insertions(+), 45 deletions(-)

More information about dbx at CRAN
Permanent link

Package cffdrs updated to version 1.8.5 with previous version 1.8.4 dated 2018-12-19

Title: Canadian Forest Fire Danger Rating System
Description: This project provides a group of new functions to calculate the outputs of the two main components of the Canadian Forest Fire Danger Rating System (CFFDRS) at various time scales: the Fire Weather Index (FWI) System and the Fire Behaviour Prediction (FBP) System. Some functions have two versions, table and raster based.
Author: Xianli Wang, Alan Cantin, Marc-André Parisien, Mike Wotton, Kerry Anderson, Brett Moore, Tom Schiks, and Mike Flannigan
Maintainer: Alan Cantin <Alan.Cantin@Canada.ca>

Diff between cffdrs versions 1.8.4 dated 2018-12-19 and 1.8.5 dated 2019-04-24

 DESCRIPTION           |   12 ++++++------
 MD5                   |    6 +++---
 R/dcCalc.R            |    6 ++++--
 man/cffdrs-package.Rd |    4 ++--
 4 files changed, 15 insertions(+), 13 deletions(-)

More information about cffdrs at CRAN
Permanent link

Package bWGR updated to version 1.6.3 with previous version 1.6.2 dated 2019-04-10

Title: Bayesian Whole-Genome Regression
Description: Whole-genome regression methods on Bayesian framework fitted via EM or Gibbs sampling, with optional kernel term and sampling techniques as described by Xavier (2017) <doi:10.1186/s12859-017-1582-3>.
Author: Alencar Xavier, William Muir, Shizhong Xu, Katy Rainey.
Maintainer: Alencar Xavier <alenxav@gmail.com>

Diff between bWGR versions 1.6.2 dated 2019-04-10 and 1.6.3 dated 2019-04-24

 DESCRIPTION         |    8 -
 MD5                 |   16 +--
 R/RcppExports.R     |  262 ++++++++++++++++++++++++++--------------------------
 R/mix.R             |  185 ++++++++++++++++++++++--------------
 R/wgr.R             |   34 ++++++
 demo/mixedmodel.R   |    8 -
 man/bWGR.Rd         |    4 
 man/mix.Rd          |    1 
 src/wgr20190410.cpp |    3 
 9 files changed, 301 insertions(+), 220 deletions(-)

More information about bWGR at CRAN
Permanent link

Package augSIMEX updated to version 3.7.2 with previous version 3.1 dated 2018-11-05

Title: Analysis of Data with Mixed Measurement Error and Misclassification in Covariates
Description: Implementation of the augmented Simulation-Extrapolation (SIMEX) algorithm proposed by Yi et al. (2015) <doi:10.1080/01621459.2014.922777> for analyzing the data with mixed measurement error and misclassification. The main function provides a similar summary output as that of glm() function. Both parametric and empirical SIMEX are considered in the package.
Author: Qihuang Zhang <qihuang.zhang@uwaterloo.ca>, Grace Y. Yi <yyi@uwaterloo.ca>
Maintainer: Qihuang Zhang <qihuang.zhang@uwaterloo.ca>

Diff between augSIMEX versions 3.1 dated 2018-11-05 and 3.7.2 dated 2019-04-24

 DESCRIPTION              |   11 ++---
 MD5                      |   16 +++----
 NAMESPACE                |    3 +
 R/SIMEX_functions.R      |    5 +-
 R/augSIMEX.R             |   97 +++++++++++++++++++++++++++++++++++++----------
 man/augSIMEX.Rd          |   22 +++++++---
 src/scoregaussiancpp.cpp |   27 +++----------
 src/scorelogitcpp.cpp    |   12 -----
 src/scoreprobitcpp.cpp   |    6 +-
 9 files changed, 125 insertions(+), 74 deletions(-)

More information about augSIMEX at CRAN
Permanent link

Package DisImpact updated to version 0.0.4 with previous version 0.0.3 dated 2018-07-11

Title: Calculates Disproportionate Impact When Binary Success Data are Disaggregated by Subgroups
Description: Implements methods for calculating disproportionate impact: the percentage point gap, proportionality index, and the 80% index. California Community Colleges Chancellor's Office (2017). Percentage Point Gap Method. <http://extranet.cccco.edu/Portals/1/TRIS/Research/Analysis/PercentagePointGapMethod2017.pdf>. California Community Colleges Chancellor's Office (2014). Guidelines for Measuring Disproportionate Impact in Equity Plans. <http://extranet.cccco.edu/Portals/1/TRIS/Research/Accountability/GUIDELINES%20FOR%20MEASURING%20DISPROPORTIONATE%20IMPACT%20IN%20EQUITY%20PLANS.pdf>.
Author: Vinh Nguyen [aut, cre]
Maintainer: Vinh Nguyen <nguyenvq714@gmail.com>

Diff between DisImpact versions 0.0.3 dated 2018-07-11 and 0.0.4 dated 2019-04-24

 DESCRIPTION              |    8 -
 MD5                      |   19 +-
 NEWS                     |only
 R/percentage_point_gap.R |   32 +++-
 build/vignette.rds       |binary
 inst/doc/Tutorial.R      |    5 
 inst/doc/Tutorial.Rmd    |  319 ++++++++++++++++++++++++-----------------------
 inst/doc/Tutorial.html   |   79 +++++++----
 man/di_ppg.Rd            |   21 +--
 man/ppg_moe.Rd           |    9 +
 vignettes/Tutorial.Rmd   |  319 ++++++++++++++++++++++++-----------------------
 11 files changed, 439 insertions(+), 372 deletions(-)

More information about DisImpact at CRAN
Permanent link

Package BatchGetSymbols updated to version 2.5.2 with previous version 2.5 dated 2019-04-15

Title: Downloads and Organizes Financial Data for Multiple Tickers
Description: Makes it easy to download a large number of trade data from Yahoo Finance <https://finance.yahoo.com/>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>

Diff between BatchGetSymbols versions 2.5 dated 2019-04-15 and 2.5.2 dated 2019-04-24

 DESCRIPTION                            |    8 
 MD5                                    |   16 -
 NAMESPACE                              |    1 
 NEWS.md                                |    8 
 R/BatchGetSymbols.R                    |    6 
 R/GetFTSE100Stocks.R                   |only
 R/GetSP500Stocks.R                     |    3 
 R/Get_Ibov_Stocks.R                    |    3 
 inst/doc/BatchGetSymbols-vignette.html |  366 +++++++++++++++++++++++++--------
 man/GetFTSE100Stocks.Rd                |only
 10 files changed, 317 insertions(+), 94 deletions(-)

More information about BatchGetSymbols at CRAN
Permanent link

New package performance with initial version 0.1.0
Package: performance
Type: Package
Title: Assessment of Regression Models Performance
Version: 0.1.0
Date: 2019-04-23
Authors@R: c( person("Daniel", "Lüdecke", role = c("aut", "cre"), email = "d.luedecke@uke.de", comment = c(ORCID = "0000-0002-8895-3206")), person("Dominique", "Makowski", email = "dom.makowski@gmail.com", role = c("aut", "ctb"), comment = c(ORCID = "0000-0001-5375-9967")) )
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Description: Utilities for computing measures to assess model quality, which are not directly provided by R's 'base' or 'stats' packages. These include e.g. measures like r-squared, intraclass correlation coefficient (Nakagawa, Johnson & Schielzeth (2017) <doi:10.1098/rsif.2017.0213>), root mean squared error or functions to check models for overdispersion, singularity or zero-inflation and more. Functions apply to a large variety of regression models, including generalized linear models, mixed effects models and Bayesian models.
URL: https://easystats.github.io/performance/
BugReports: https://github.com/easystats/performance/issues
Imports: insight, bayestestR
Suggests: brms, covr, graphics, glmmTMB, ggplot2, lme4, loo, Matrix, MASS, mlogit, nlme, psych, rmarkdown, rstanarm, rstantools, scales, testthat
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-04-23 08:31:38 UTC; mail
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>), Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>)
Repository: CRAN
Date/Publication: 2019-04-24 16:40:03 UTC

More information about performance at CRAN
Permanent link

New package inspectdf with initial version 0.0.1
Package: inspectdf
Title: Inspection, Comparison and Visualisation of Data Frames
Version: 0.0.1
Authors@R: person("Alastair", "Rushworth", email = "alastairmrushworth@gmail.com", role = c("aut", "cre"))
Maintainer: Alastair Rushworth <alastairmrushworth@gmail.com>
Description: A collection of utilities for columnwise summary, comparison and visualisation of data frames. Functions report missingness, categorical levels, numeric distribution, correlation, column types and memory usage.
Language: en_GB
LinkingTo: Rcpp
LazyLoad: yes
ByteCompile: yes
Encoding: UTF-8
Depends: R (>= 3.1.0)
Imports: dplyr, ggplot2, magrittr, Rcpp, tibble, tidyr
Suggests: testthat
License: GPL-2
URL: http://github.com/alastairrushworth/inspectdf
BugReports: http://github.com/alastairrushworth/inspectdf/issues
RoxygenNote: 6.1.1
NeedsCompilation: yes
Packaged: 2019-04-22 09:11:35 UTC; alastairrushworth
Author: Alastair Rushworth [aut, cre]
Repository: CRAN
Date/Publication: 2019-04-24 16:10:03 UTC

More information about inspectdf at CRAN
Permanent link

New package reverseR with initial version 0.1
Package: reverseR
Type: Package
LazyLoad: no
LazyData: yes
Title: Linear Regression Stability to Significance Reversal
Version: 0.1
Date: 2019-04-18
Author: Andrej-Nikolai Spiess <a.spiess@uke.uni-hamburg.de> Michal Burdukiewicz <michalburdukiewicz@gmail.com> Stefan Roediger <stefan.roediger@b-tu.de>
Maintainer: Andrej-Nikolai Spiess <a.spiess@uke.uni-hamburg.de>
Description: Tests linear regressions for significance reversal through leave-one(multiple)-out and shifting/addition of response values. The paradigm of the package is loosely based on the somewhat forgotten "dfstat" criterion (Belsley, Kuh & Welsch 1980 <doi:10.1002/0471725153.ch2>), which tests influential values in linear models from their effect on statistical inference, i.e. changes in p-value.
License: GPL (>= 2)
Depends: R (>= 2.13.0), shiny, markdown, knitr
Imports: DT
NeedsCompilation: no
Packaged: 2019-04-18 16:21:57 UTC; anspiess
Repository: CRAN
Date/Publication: 2019-04-24 15:40:03 UTC

More information about reverseR at CRAN
Permanent link

New package paws.compute with initial version 0.1.0
Package: paws.compute
Title: Amazon Web Services Compute APIs
Version: 0.1.0
Authors@R: c(person(given = "David", family = "Kretch", role = c("aut", "cre"), email = "david.kretch@gmail.com"), person(given = "Adam", family = "Banker", role = "aut", email = "adam.banker39@gmail.com"), person(given = "Amazon.com, Inc.", role = "cph"))
Description: Interface to Amazon Web Services' compute APIs, including 'Elastic Compute Cloud' ('EC2'), 'Lambda' functions-as-a-service, containers, batch processing, and more <https://aws.amazon.com/>.
License: Apache License (>= 2.0)
Imports: paws.common
Suggests: testthat
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Collate: 'batch_service.R' 'batch_interfaces.R' 'batch_operations.R' 'ec2_service.R' 'ec2_interfaces.R' 'ec2_operations.R' 'ecr_service.R' 'ecr_interfaces.R' 'ecr_operations.R' 'ecs_service.R' 'ecs_interfaces.R' 'ecs_operations.R' 'eks_service.R' 'eks_interfaces.R' 'eks_operations.R' 'elasticbeanstalk_service.R' 'elasticbeanstalk_interfaces.R' 'elasticbeanstalk_operations.R' 'lambda_service.R' 'lambda_interfaces.R' 'lambda_operations.R' 'lightsail_service.R' 'lightsail_interfaces.R' 'lightsail_operations.R' 'serverlessapplicationrepository_service.R' 'serverlessapplicationrepository_interfaces.R' 'serverlessapplicationrepository_operations.R'
NeedsCompilation: no
Packaged: 2019-04-18 02:05:33 UTC; david.kretch
Author: David Kretch [aut, cre], Adam Banker [aut], Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Repository: CRAN
Date/Publication: 2019-04-24 15:20:03 UTC

More information about paws.compute at CRAN
Permanent link

New package ggdemetra with initial version 0.1.0
Package: ggdemetra
Type: Package
Title: 'ggplot2' Extension for Seasonal and Trading Day Adjustment with 'RJDemetra'
Version: 0.1.0
Authors@R: c(person("Alain", "Quartier-la-Tente", role = c("aut", "cre"), email = "alain.quartier@yahoo.fr"))
Description: Provides 'ggplot2' functions to return the results of seasonal and trading day adjustment made by 'RJDemetra'. 'RJDemetra' is an 'R' interface around 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>), the seasonal adjustment software officially recommended to the members of the European Statistical System and the European System of Central Banks.
Depends: R (>= 3.1.2), ggplot2 (>= 2.0.0)
Imports: RJDemetra (>= 0.1.2), ggrepel, gridExtra
Suggests: knitr, rmarkdown
SystemRequirements: Java SE 8 or higher
License: EUPL
URL: https://github.com/AQLT/ggdemetra
BugReports: https://github.com/AQLT/ggdemetra/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-04-18 11:14:58 UTC; ZW20HJ
Author: Alain Quartier-la-Tente [aut, cre]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Repository: CRAN
Date/Publication: 2019-04-24 15:40:07 UTC

More information about ggdemetra at CRAN
Permanent link

New package flyio with initial version 0.1.2
Package: flyio
Type: Package
Title: Read or Write any Format from Anywhere
Version: 0.1.2
Author: Himanshu Sikaria [aut, cre]
Maintainer: Himanshu Sikaria <himanshu.sikaria@socialcops.com>
Description: Perform input, output of files in R from data sources like Google Cloud Storage ('GCS') <https://cloud.google.com/storage/>, Amazon Web Services ('AWS S3') <https://aws.amazon.com/s3> or local drive.
URL: https://github.com/socialcopsdev/flyio
BugReports: https://github.com/socialcopsdev/flyio/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Depends: R (>= 3.1.2)
Imports: stringr, assertthat, googleCloudStorageR, aws.s3, utils, tools
NeedsCompilation: no
Packaged: 2019-04-18 10:12:20 UTC; himanshu.s
Repository: CRAN
Date/Publication: 2019-04-24 15:30:03 UTC

More information about flyio at CRAN
Permanent link

New package FARDEEP with initial version 1.0.1
Package: FARDEEP
Title: Fast and Robust Deconvolution of Tumor Infiltrating Lymphocyte from Expression Profiles using Least Trimmed Squares
Version: 1.0.1
Authors@R: c( person("Yuning", "Hao", role = c("aut")), person("Ming", "Yan", role = c("aut")), person("Blake R.", "Heath", role = c("aut")), person("Yu L.", "Lei", role = c("aut")), person("Yuying", "Xie", email = "xyy@egr.msu.edu", role = c("aut","cre")))
Description: Using the idea of least trimmed square, it could automatically detects and removes outliers from data before estimating the coefficients. It is a robust machine learning tool which can be applied to gene-expression deconvolution technique. Yuning Hao, Ming Yan, Blake R. Heath, Yu L. Lei and Yuying Xie (2019) <doi:10.1101/358366>.
Depends: R (>= 3.3.0)
License: MIT + file LICENSE
Imports: nnls(>= 1.4), stats, preprocessCore
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-04-18 06:51:24 UTC; yuning
Author: Yuning Hao [aut], Ming Yan [aut], Blake R. Heath [aut], Yu L. Lei [aut], Yuying Xie [aut, cre]
Maintainer: Yuying Xie <xyy@egr.msu.edu>
Repository: CRAN
Date/Publication: 2019-04-24 15:10:03 UTC

More information about FARDEEP at CRAN
Permanent link

New package compstatr with initial version 0.1.1
Package: compstatr
Type: Package
Title: Tools for St. Louis Crime Data
Version: 0.1.1
Authors@R: c( person("Christopher", "Prener", ,"chris.prener@slu.edu", c("aut", "cre")), person("Cree", "Foeller", ,"cree.foeller@slu.edu", c("aut")), person("Taylor", "Braswell", , , c("com")) )
Description: Provides a set of tools for creating yearly data sets of St. Louis Metropolitan Police Department (SLMPD) crime data, which are available from January 2008 onward as monthly CSV releases on their website (<http:www.slmpd.org/Crimereports.shtml>). Once data are validated and created (monthly data releases have varying numbers of columns as well as different column names and formats), 'compstatr' also provides functions for categorizing and mapping crimes in St. Louis. The categorization tools that are provided will also work with any police department that uses 5 and 6 digit numeric codes to identify specific crimes. These data provide researchers and policy makers detailed data for St. Louis, which in the last several years has had some of the highest or the highest violent crime rates in the United States.
Depends: R (>= 3.3)
License: GPL-3
URL: https://github.com/slu-openGIS/compstatr
BugReports: https://github.com/slu-openGIS/compstatr
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Imports: dplyr, fs, lubridate, purrr, rlang, readr, sf, stringr, tibble, tidyr
Suggests: testthat, knitr, rmarkdown, covr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-04-20 20:58:57 UTC; prenercg
Author: Christopher Prener [aut, cre], Cree Foeller [aut], Taylor Braswell [com]
Maintainer: Christopher Prener <chris.prener@slu.edu>
Repository: CRAN
Date/Publication: 2019-04-24 16:00:03 UTC

More information about compstatr at CRAN
Permanent link

New package modelplotr with initial version 1.0.0
Package: modelplotr
Type: Package
Title: Plots to Evaluate the Business Performance of Predictive Models
Version: 1.0.0
Authors@R: c( person("Jurriaan","Nagelkerke",email="jurriaan.nagelkerke@gmail.com",role=c("aut","cre")), person("Pieter","Marcus",email="pieter.marcus@persgroep.net",role="aut"))
URL: https://github.com/jurrr/modelplotr
BugReports: https://github.com/jurrr/modelplotr/issues
Description: Plots to assess the quality of predictive models from a business perspective. Using these plots, it can be shown how implementation of the model will impact business targets like response on a campaign or return on investment. Different scopes can be selected: compare models, compare datasets or compare target class values and various plot customization and highlighting options are available. targets like response on a campaign. Different scopes can be selected: compare models, compare datasets or compare target class values and various plot customization and highlighting options are available.
Depends: R (>= 3.1.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: ggplot2 (>= 2.2.1), gridExtra (>= 2.3.0), magrittr (>= 1.5.0), dplyr (>= 0.7.7), RColorBrewer (>= 1.1.2), ggfittext (>= 0.6.0), scales (>= 1.0.0), rlang (>= 0.3.1)
RoxygenNote: 6.1.1
Suggests: mlr (>= 2.12.1), caret (>= 6.0), randomForest (>= 4.6.14), nnet(>= 7.3-12), e1071, h2o, keras, knitr, rmarkdown, testthat, xgboost, stringr, kableExtra, lattice, ranger, glmnet
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-04-16 13:21:57 UTC; j.nagelkerke
Author: Jurriaan Nagelkerke [aut, cre], Pieter Marcus [aut]
Maintainer: Jurriaan Nagelkerke <jurriaan.nagelkerke@gmail.com>
Repository: CRAN
Date/Publication: 2019-04-24 14:10:03 UTC

More information about modelplotr at CRAN
Permanent link

New package CSTools with initial version 1.0.0
Package: CSTools
Title: Assessing Skill of Climate Forecasts on Seasonal-to-Decadal Timescales
Version: 1.0.0
Authors@R: c( person("BSC-CNS", role = c("cph")), person("Louis-Philippe", "Caron", , "louis-philippe.caron@bsc.es", role = "aut", comment = c(ORCID = "0000-0001-5221-0147")), person("Jost", "von Hardenberg", , "j.vonhardenberg@isac.cnr.it", role = "aut", comment = c(ORCID = "0000-0002-5312-8070")), person("Nuria", "Perez-Zanon", , "nuria.perez@bsc.es", role = c("aut", "cre")), person("Llorenç", "LLedo", , "llledo@bsc.es", role = "aut"), person("Nicolau", "Manubens", , "nicolau.manubens@bsc.es", role = "aut"), person("Niti", "Mishra", , "niti.mishra@bsc.es", role = "ctb"), person("Veronica", "Torralba", , "veronica.torralba@bsc.es", role = "aut"), person("Deborah", "Verfaillie", , "deborah.verfaillie@bsc.es", role = "aut"), person("Lauriane", "Batte", , "lauriane.batte@meteo.fr", role = "ctb"), person("Jesus", "Peña", , "jesus.pena@bsc.es", role = "ctb"), person("Bert", "van Schaeybroeck", , "bertvs@meteo.be", role = "ctb"))
Description: Exploits dynamical seasonal forecasts in order to provide information relevant to stakeholders at the seasonal timescale. The package contains process-based methods for forecast calibration, bias correction, statistical and stochastic downscaling, optimal forecast combination and multivariate verification, as well as basic and advanced tools to obtain tailored products. Doblas-Reyes et al. (2005) <doi:10.1111/j.1600-0870.2005.00104.x>. Mishra et al. (2018) <doi:10.1007/s00382-018-4404-z>. Terzago et al. (2018) <doi:10.5194/nhess-18-2825-2018>. Torralba et al. (2017) <doi:10.1175/JAMC-D-16-0204.1>. D'Onofrio et al. (2014) <doi:10.1175/JHM-D-13-096.1>.
Depends: R (>= 3.2.0), maps
Imports: s2dverification, rainfarmr, multiApply, ncdf4, plyr, abind, data.table, reshape2, ggplot2, graphics, grDevices, stats, utils
Suggests: zeallot, testthat, knitr, rmarkdown
VignetteBuilder: knitr
License: Apache License 2.0
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.0
NeedsCompilation: no
Packaged: 2019-04-17 13:33:36 UTC; nperez
Author: BSC-CNS [cph], Louis-Philippe Caron [aut] (<https://orcid.org/0000-0001-5221-0147>), Jost von Hardenberg [aut] (<https://orcid.org/0000-0002-5312-8070>), Nuria Perez-Zanon [aut, cre], Llorenç LLedo [aut], Nicolau Manubens [aut], Niti Mishra [ctb], Veronica Torralba [aut], Deborah Verfaillie [aut], Lauriane Batte [ctb], Jesus Peña [ctb], Bert van Schaeybroeck [ctb]
Maintainer: Nuria Perez-Zanon <nuria.perez@bsc.es>
Repository: CRAN
Date/Publication: 2019-04-24 14:20:02 UTC

More information about CSTools at CRAN
Permanent link

New package bisque with initial version 1.0.0
Package: bisque
Type: Package
Title: Approximate Bayesian Inference via Sparse Grid Quadrature Evaluation (BISQuE) for Hierarchical Models
Version: 1.0.0
Date: 2019-04-14
Author: Joshua Hewitt
Maintainer: Joshua Hewitt <joshua.hewitt@colostate.edu>
Description: Implementation of the 'bisque' strategy for approximate Bayesian posterior inference. See Hewitt and Hoeting (2019) <arXiv:1904.07270> for complete details. 'bisque' combines conditioning with sparse grid quadrature rules to approximate marginal posterior quantities of hierarchical Bayesian models. The resulting approximations are computationally efficient for many hierarchical Bayesian models. The 'bisque' package allows approximate posterior inference for custom models; users only need to specify the conditional densities required for the approximation.
License: GPL-3
RoxygenNote: 6.1.1
Suggests: testthat, fields
Depends: R (>= 3.0.2)
Imports: mvQuad, Rcpp, doRNG, foreach, itertools
LinkingTo: Rcpp (>= 0.12.4), RcppArmadillo, RcppEigen (>= 0.3.3.3.1)
SystemRequirements: A system with a recent-enough C++11 compiler (such as g++-4.8 or later).
NeedsCompilation: yes
Encoding: UTF-8
Packaged: 2019-04-17 20:14:20 UTC; pointdex
Repository: CRAN
Date/Publication: 2019-04-24 14:30:03 UTC

More information about bisque at CRAN
Permanent link

New package dialrjars with initial version 8.10.9
Type: Package
Package: dialrjars
Title: Required 'libphonenumber' jars for the 'dialr' Package
Version: 8.10.9
Authors@R: c(person(given = "Danny", family = "Smith", role = c("aut", "cre"), email = "danny@gorcha.org"), person(given = "Google Inc.", role = c("ctb", "cph"), comment = "libphonenumber"), person(given = "Vonage Holdings Corp.", role = c("ctb", "cph"), comment = "libphonenumber"), person(given = "Ian", family = "Galpin", role = c("ctb", "cph"), comment = "libphonenumber"), person(given = "Ben", family = "Gertzfield", role = c("ctb", "cph"), comment = "libphonenumber"))
Description: Collects 'libphonenumber' jars required for the 'dialr' package.
License: GPL-3
URL: https://github.com/socialresearchcentre/dialrjars
BugReports: https://github.com/socialresearchcentre/dialrjars/issues
Depends: R (>= 3.1)
Imports: rJava
Suggests: testthat
Copyright: See file COPYRIGHTS
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
RoxygenNote: 6.1.1
SystemRequirements: java (>= 1.6)
Packaged: 2019-04-10 09:28:16 UTC; danny
Author: Danny Smith [aut, cre], Google Inc. [ctb, cph] (libphonenumber), Vonage Holdings Corp. [ctb, cph] (libphonenumber), Ian Galpin [ctb, cph] (libphonenumber), Ben Gertzfield [ctb, cph] (libphonenumber)
Maintainer: Danny Smith <danny@gorcha.org>
Repository: CRAN
Date/Publication: 2019-04-24 12:20:03 UTC

More information about dialrjars at CRAN
Permanent link

New package countHMM with initial version 0.1.0
Package: countHMM
Type: Package
Title: Penalized Estimation of Flexible Hidden Markov Models for Time Series of Counts
Version: 0.1.0
Author: Timo Adam
Maintainer: Timo Adam <timo.adam@uni-bielefeld.de>
Description: Provides tools for penalized estimation of flexible hidden Markov models for time series of counts w/o the need to specify a (parametric) family of distributions. These include functions for model fitting, model checking, and state decoding. For details, see Adam, T., Langrock, R., and Weiß, C.H. (2019): Penalized Estimation of Flexible Hidden Markov Models for Time Series of Counts. <arXiv:1901.03275>.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-04-17 10:11:13 UTC; timoadam
Repository: CRAN
Date/Publication: 2019-04-24 13:00:02 UTC

More information about countHMM at CRAN
Permanent link

New package conditionz with initial version 0.1.0
Package: conditionz
Title: Control How Many Times Conditions are Thrown
Description: Provides ability to control how many times in function calls conditions are thrown (shown to the user). Includes control of warnings and messages.
Version: 0.1.0
Authors@R: c( person("Scott", "Chamberlain", role = c("aut", "cre"), email = "myrmecocystus@gmail.com", comment = c(ORCID = "0000-0003-1444-9135")))
License: MIT + file LICENSE
URL: https://github.com/ropenscilabs/conditionz
BugReports: http://github.com/ropenscilabs/conditionz/issues
Encoding: UTF-8
Depends: R(>= 3.2.1)
Imports: R6, uuid
Suggests: testthat
RoxygenNote: 6.1.1
X-schema.org-applicationCategory: Utilities
X-schema.org-keywords: condition, condition-control, warning, message
X-schema.org-isPartOf: https://ropensci.org
NeedsCompilation: no
Packaged: 2019-04-11 16:31:35 UTC; sckott
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Repository: CRAN
Date/Publication: 2019-04-24 12:20:07 UTC

More information about conditionz at CRAN
Permanent link

New package collector with initial version 0.1.0
Package: collector
Title: Quantified Risk Assessment Data Collection
Version: 0.1.0
Authors@R: person("David", "Severski", email = "davidski@deadheaven.com", role = c("aut", "cre"), comment = c(ORCID ="0000-0001-7867-0459"))
Description: An open source process for collecting quantified data inputs from subject matter experts. Intended for feeding into an OpenFAIR analysis <https://www2.opengroup.org/ogsys/catalog/C13K> using a tool such as 'evaluator' <https://evaluator.tidyrisk.org>.
Depends: R (>= 3.4.0)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Imports: EnvStats, dplyr, evaluator (>= 0.4.0), flextable, ggplot2, ggpubr, magrittr, purrr, quanteda, readr, rlang, rmarkdown, stringr, tibble, tidyr, officer, xaringan
Suggests: spelling, testthat, covr
URL: https://collector.tidyrisk.org
BugReports: https://github.com/davidski/collector/issues
Language: en-US
NeedsCompilation: no
Packaged: 2019-04-13 20:06:18 UTC; davidski
Author: David Severski [aut, cre] (<https://orcid.org/0000-0001-7867-0459>)
Maintainer: David Severski <davidski@deadheaven.com>
Repository: CRAN
Date/Publication: 2019-04-24 12:40:03 UTC

More information about collector at CRAN
Permanent link

Package PrevMap updated to version 1.5 with previous version 1.4.2 dated 2018-07-11

Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Description: Provides functions for both likelihood-based and Bayesian analysis of spatially referenced prevalence data, and is also an extension of the 'geoR' package.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi <e.giorgi@lancaster.ac.uk>

Diff between PrevMap versions 1.4.2 dated 2018-07-11 and 1.5 dated 2019-04-24

 PrevMap-1.4.2/PrevMap/inst/CITATION                           |only
 PrevMap-1.5/PrevMap/DESCRIPTION                               |   13 
 PrevMap-1.5/PrevMap/MD5                                       |   74 
 PrevMap-1.5/PrevMap/NAMESPACE                                 |   24 
 PrevMap-1.5/PrevMap/R/foo.R                                   |23896 +++++-----
 PrevMap-1.5/PrevMap/inst/doc/PrevMap.pdf                      | 4240 -
 PrevMap-1.5/PrevMap/man/Laplace.sampling.lr.Rd                |    4 
 PrevMap-1.5/PrevMap/man/binary.probit.Bayes.Rd                |    5 
 PrevMap-1.5/PrevMap/man/binomial.logistic.Bayes.Rd            |   17 
 PrevMap-1.5/PrevMap/man/binomial.logistic.MCML.Rd             |    2 
 PrevMap-1.5/PrevMap/man/contour.pred.PrevMap.Rd               |    3 
 PrevMap-1.5/PrevMap/man/control.mcmc.Bayes.Rd                 |   15 
 PrevMap-1.5/PrevMap/man/control.mcmc.Bayes.SPDE.Rd            |    8 
 PrevMap-1.5/PrevMap/man/control.prior.Rd                      |    7 
 PrevMap-1.5/PrevMap/man/glgm.LA.Rd                            |only
 PrevMap-1.5/PrevMap/man/linear.model.Bayes.Rd                 |    6 
 PrevMap-1.5/PrevMap/man/linear.model.MLE.Rd                   |    7 
 PrevMap-1.5/PrevMap/man/lm.ps.MCML.Rd                         |    9 
 PrevMap-1.5/PrevMap/man/plot.PrevMap.diagnostic.Rd            |only
 PrevMap-1.5/PrevMap/man/plot.pred.PrevMap.Rd                  |    3 
 PrevMap-1.5/PrevMap/man/plot.pred.PrevMap.ps.Rd               |    4 
 PrevMap-1.5/PrevMap/man/point.map.Rd                          |only
 PrevMap-1.5/PrevMap/man/poisson.log.MCML.Rd                   |   10 
 PrevMap-1.5/PrevMap/man/spat.corr.diagnostic.Rd               |only
 PrevMap-1.5/PrevMap/man/spatial.pred.binomial.Bayes.Rd        |    4 
 PrevMap-1.5/PrevMap/man/spatial.pred.binomial.MCML.Rd         |    7 
 PrevMap-1.5/PrevMap/man/spatial.pred.linear.Bayes.Rd          |    6 
 PrevMap-1.5/PrevMap/man/spatial.pred.linear.MLE.Rd            |   14 
 PrevMap-1.5/PrevMap/man/spatial.pred.poisson.MCML.Rd          |    9 
 PrevMap-1.5/PrevMap/man/trend.plot.Rd                         |only
 PrevMap-1.5/PrevMap/man/variog.diagnostic.glgm.Rd             |only
 PrevMap-1.5/PrevMap/man/variog.diagnostic.lm.Rd               |only
 PrevMap-1.5/PrevMap/man/variogram.Rd                          |only
 PrevMap-1.5/PrevMap/vignettes/Images/acf_loaloa-min.png       |only
 PrevMap-1.5/PrevMap/vignettes/Images/acf_loaloa.png           |binary
 PrevMap-1.5/PrevMap/vignettes/Images/autocorrelogram.png      |binary
 PrevMap-1.5/PrevMap/vignettes/Images/data_sim_pred.png        |binary
 PrevMap-1.5/PrevMap/vignettes/Images/diagnostic.png           |binary
 PrevMap-1.5/PrevMap/vignettes/Images/loaloa1.png              |binary
 PrevMap-1.5/PrevMap/vignettes/Images/loaloa_pred.png          |binary
 PrevMap-1.5/PrevMap/vignettes/Images/loaloa_profile.png       |binary
 PrevMap-1.5/PrevMap/vignettes/Images/loaloa_profile_kappa.png |binary
 PrevMap-1.5/PrevMap/vignettes/Images/sim_loc.png              |binary
 43 files changed, 14775 insertions(+), 13612 deletions(-)

More information about PrevMap at CRAN
Permanent link

New package kmc with initial version 0.2-3
Package: kmc
Version: 0.2-3
Title: Kaplan-Meier Estimator with Constraints for Right Censored Data -- a Recursive Computational Algorithm
Author: Yifan Yang <yifan.yang@transwarp.io> , Mai Zhou<mai@ms.uky.edu>
Maintainer: Yifan Yang <yifan.yang@uky.edu>
Description: Given constraints for right censored data, we use a recursive computational algorithm to calculate the the "constrained" Kaplan-Meier estimator. The constraint is assumed given in linear estimating equations or mean functions. We also illustrate how this leads to the empirical likelihood ratio test with right censored data and accelerated failure time model with given coefficients. EM algorithm from emplik package is used to get the initial value. The properties and performance of the EM algorithm is discussed in Mai Zhou and Yifan Yang (2015)<doi: 10.1007/s00180-015-0567-9> and Mai Zhou and Yifan Yang (2017) <10.1002/wics.1400>. More applications could be found in Mai Zhou (2015) <doi: 10.1201/b18598>.
URL: http://github.com/yfyang86/kmc
License: LGPL-3
Depends: R (>= 2.13.1), compiler, rootSolve, emplik
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2019-04-24 09:29:26.930 UTC; yifanyang
Repository: CRAN
Date/Publication: 2019-04-24 11:50:03 UTC

More information about kmc at CRAN
Permanent link

Package irace updated to version 3.2 with previous version 3.1 dated 2018-07-12

Title: Iterated Racing for Automatic Algorithm Configuration
Description: Iterated race is an extension of the Iterated F-race method for the automatic configuration of optimization algorithms, that is, (offline) tuning their parameters by finding the most appropriate settings given a set of instances of an optimization problem.
Author: Manuel López-Ibáñez [aut, cre] (<https://orcid.org/0000-0001-9974-1295>), Jérémie Dubois-Lacoste [aut], Leslie Pérez Cáceres [aut], Thomas Stützle [aut], Mauro Birattari [aut], Eric Yuan [ctb], Prasanna Balaprakash [ctb]
Maintainer: Manuel López-Ibáñez <manuel.lopez-ibanez@manchester.ac.uk>

Diff between irace versions 3.1 dated 2018-07-12 and 3.2 dated 2019-04-24

 irace-3.1/irace/inst/examples/target-runner-python/target-runner.py          |only
 irace-3.1/irace/tests/configurations.txt                                     |only
 irace-3.1/irace/tests/forbidden.txt                                          |only
 irace-3.1/irace/tests/logparameters.txt                                      |only
 irace-3.1/irace/tests/parameters.txt                                         |only
 irace-3.1/irace/tests/test-targetRunnerParallel.R                            |only
 irace-3.1/irace/tests/testcapping.R                                          |only
 irace-3.1/irace/tests/testmisc.R                                             |only
 irace-3.1/irace/tests/testtargeval.R                                         |only
 irace-3.1/irace/tests/testtime.R                                             |only
 irace-3.1/irace/tests/train-instances.txt                                    |only
 irace-3.2/irace/.Rinstignore                                                 |    1 
 irace-3.2/irace/DESCRIPTION                                                  |   10 
 irace-3.2/irace/MD5                                                          |  127 +--
 irace-3.2/irace/NAMESPACE                                                    |    1 
 irace-3.2/irace/NEWS                                                         |   87 +-
 irace-3.2/irace/R/ablation.R                                                 |   41 -
 irace-3.2/irace/R/generation.R                                               |  222 ++---
 irace-3.2/irace/R/irace-options.R                                            |   23 
 irace-3.2/irace/R/irace.R                                                    |   82 +-
 irace-3.2/irace/R/main.R                                                     |   66 -
 irace-3.2/irace/R/model.R                                                    |   63 -
 irace-3.2/irace/R/parameterExploration.R                                     |    3 
 irace-3.2/irace/R/race-wrapper.R                                             |  138 ++-
 irace-3.2/irace/R/race.R                                                     |  141 +--
 irace-3.2/irace/R/readConfiguration.R                                        |  116 +-
 irace-3.2/irace/R/readParameters.R                                           |   60 +
 irace-3.2/irace/R/testing.R                                                  |   10 
 irace-3.2/irace/R/utils.R                                                    |   97 +-
 irace-3.2/irace/R/version.R                                                  |    2 
 irace-3.2/irace/build/partial.rdb                                            |binary
 irace-3.2/irace/build/vignette.rds                                           |binary
 irace-3.2/irace/inst/doc/irace-package.R                                     |   31 
 irace-3.2/irace/inst/doc/irace-package.Rnw                                   |  107 +-
 irace-3.2/irace/inst/doc/irace-package.pdf                                   |binary
 irace-3.2/irace/inst/examples/batchmode-cluster/target-evaluator             |    4 
 irace-3.2/irace/inst/examples/hypervolume/target-evaluator                   |    4 
 irace-3.2/irace/inst/examples/target-runner-python/target-runner-acotsp.py   |only
 irace-3.2/irace/inst/examples/target-runner-python/target-runner-advanced.py |    4 
 irace-3.2/irace/inst/examples/target-runner-python/trivial                   |only
 irace-3.2/irace/inst/exdata/irace-acotsp.Rdata                               |binary
 irace-3.2/irace/inst/exdata/sann.rda                                         |binary
 irace-3.2/irace/inst/templates/scenario.txt.tmpl                             |    4 
 irace-3.2/irace/inst/templates/windows/target-runner.bat                     |   28 
 irace-3.2/irace/man/ablation.Rd                                              |    5 
 irace-3.2/irace/man/checkIraceScenario.Rd                                    |    4 
 irace-3.2/irace/man/defaultScenario.Rd                                       |    1 
 irace-3.2/irace/man/getConfigurationByIteration.Rd                           |    4 
 irace-3.2/irace/man/readParameters.Rd                                        |   20 
 irace-3.2/irace/man/scenario.update.paths.Rd                                 |only
 irace-3.2/irace/man/target.evaluator.default.Rd                              |   28 
 irace-3.2/irace/man/target.runner.default.Rd                                 |   24 
 irace-3.2/irace/man/testConfigurations.Rd                                    |    8 
 irace-3.2/irace/man/testing.main.Rd                                          |   17 
 irace-3.2/irace/tests/testthat/bug_large_new_instances-confs.txt             |only
 irace-3.2/irace/tests/testthat/bug_large_new_instances.Rdata                 |only
 irace-3.2/irace/tests/testthat/common.R                                      |only
 irace-3.2/irace/tests/testthat/configurations.txt                            |only
 irace-3.2/irace/tests/testthat/dummy_wrapper.py                              |only
 irace-3.2/irace/tests/testthat/forbidden.txt                                 |only
 irace-3.2/irace/tests/testthat/logparameters.txt                             |only
 irace-3.2/irace/tests/testthat/parameters.txt                                |only
 irace-3.2/irace/tests/testthat/test-GenericWrapper4AC.R                      |only
 irace-3.2/irace/tests/testthat/test-bugs.R                                   |only
 irace-3.2/irace/tests/testthat/test-capping.R                                |only
 irace-3.2/irace/tests/testthat/test-forbidden.R                              |only
 irace-3.2/irace/tests/testthat/test-maxTime.R                                |only
 irace-3.2/irace/tests/testthat/test-path.R                                   |    2 
 irace-3.2/irace/tests/testthat/test-sann-irace.R                             |only
 irace-3.2/irace/tests/testthat/test-similar.R                                |    2 
 irace-3.2/irace/tests/testthat/test-targetRunnerParallel.R                   |only
 irace-3.2/irace/tests/testthat/test-targeteval.R                             |only
 irace-3.2/irace/vignettes/NEWS.txt                                           |   87 +-
 irace-3.2/irace/vignettes/examples.Rdata                                     |binary
 irace-3.2/irace/vignettes/irace-acotsp-stdout.txt                            |  402 ++++------
 irace-3.2/irace/vignettes/irace-acotsp.Rdata                                 |binary
 irace-3.2/irace/vignettes/irace-package.Rnw                                  |  107 +-
 irace-3.2/irace/vignettes/log-ablation.Rdata                                 |binary
 irace-3.2/irace/vignettes/section/irace-options.tex                          |    3 
 79 files changed, 1217 insertions(+), 969 deletions(-)

More information about irace at CRAN
Permanent link

Package IMak updated to version 1.2.2 with previous version 1.2.1 dated 2018-08-06

Title: Item Maker
Description: This is an Automatic Item Generator for Psychological Assessment. Items created with the 'IMak' package should not be used in applied settings as part of the working protocol without ensuring first that the items meet the required psychometric quality standards (see Blum & Holling, 2018) <DOI:10.3389/fpsyg.2018.01286>.
Author: Diego Blum [aut, cre]
Maintainer: Diego Blum <blumworx@gmail.com>

Diff between IMak versions 1.2.1 dated 2018-08-06 and 1.2.2 dated 2019-04-24

 IMak-1.2.1/IMak/man/IMak.Rd     |only
 IMak-1.2.2/IMak/DESCRIPTION     |   10 +++++-----
 IMak-1.2.2/IMak/MD5             |   12 ++++++------
 IMak-1.2.2/IMak/R/buildfa.R     |    2 +-
 IMak-1.2.2/IMak/R/plotfa.R      |    8 ++++----
 IMak-1.2.2/IMak/inst            |only
 IMak-1.2.2/IMak/man/build_fa.Rd |   13 +++++++------
 IMak-1.2.2/IMak/man/plot_fa.Rd  |   15 ++++++++-------
 8 files changed, 31 insertions(+), 29 deletions(-)

More information about IMak at CRAN
Permanent link

Package PolynomF updated to version 2.0-0 with previous version 1.1-0 dated 2019-03-28

Title: Polynomials in R
Description: Implements univariate polynomial operations in R, including polynomial arithmetic, finding zeros, plotting, and some operations on lists of polynomials.
Author: Bill Venables, with contribution by Kurt Hornik and Georgi Boshnakov
Maintainer: Bill Venables <Bill.Venables@gmail.com>

Diff between PolynomF versions 1.1-0 dated 2019-03-28 and 2.0-0 dated 2019-04-24

 PolynomF-1.1-0/PolynomF/man/change.origin.Rd        |only
 PolynomF-1.1-0/PolynomF/man/poly.calc.Rd            |only
 PolynomF-1.1-0/PolynomF/man/poly.orth.Rd            |only
 PolynomF-2.0-0/PolynomF/DESCRIPTION                 |   10 
 PolynomF-2.0-0/PolynomF/MD5                         |   47 +--
 PolynomF-2.0-0/PolynomF/NAMESPACE                   |   31 ++
 PolynomF-2.0-0/PolynomF/R/Orthogonal_polynomials.R  |only
 PolynomF-2.0-0/PolynomF/R/PolynomF.R                |  252 +++++++++++---------
 PolynomF-2.0-0/PolynomF/inst/doc/polynomials.R      |  122 ++++++---
 PolynomF-2.0-0/PolynomF/inst/doc/polynomials.Rmd    |  207 ++++++++++------
 PolynomF-2.0-0/PolynomF/inst/doc/polynomials.pdf    |binary
 PolynomF-2.0-0/PolynomF/man/GCD.Rd                  |    4 
 PolynomF-2.0-0/PolynomF/man/GroupGenerics.Rd        |    2 
 PolynomF-2.0-0/PolynomF/man/LCM.Rd                  |    4 
 PolynomF-2.0-0/PolynomF/man/Ops.polynom.Rd          |    2 
 PolynomF-2.0-0/PolynomF/man/as.character.polynom.Rd |    2 
 PolynomF-2.0-0/PolynomF/man/as.function.polynom.Rd  |    2 
 PolynomF-2.0-0/PolynomF/man/change_origin.Rd        |only
 PolynomF-2.0-0/PolynomF/man/coef.polynom.Rd         |    2 
 PolynomF-2.0-0/PolynomF/man/plot.polynom.Rd         |    2 
 PolynomF-2.0-0/PolynomF/man/poly_calc.Rd            |only
 PolynomF-2.0-0/PolynomF/man/poly_orth.Rd            |only
 PolynomF-2.0-0/PolynomF/man/poly_orth_general.Rd    |only
 PolynomF-2.0-0/PolynomF/man/polynom.Rd              |   19 +
 PolynomF-2.0-0/PolynomF/man/solve.polynom.Rd        |    2 
 PolynomF-2.0-0/PolynomF/man/summary.polynom.Rd      |    2 
 PolynomF-2.0-0/PolynomF/man/tangent.Rd              |    2 
 PolynomF-2.0-0/PolynomF/man/zap.Rd                  |only
 PolynomF-2.0-0/PolynomF/vignettes/polynomials.Rmd   |  207 ++++++++++------
 29 files changed, 592 insertions(+), 329 deletions(-)

More information about PolynomF at CRAN
Permanent link

Package MCMCglmm updated to version 2.29 with previous version 2.28 dated 2019-02-08

Title: MCMC Generalised Linear Mixed Models
Description: MCMC Generalised Linear Mixed Models.
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield <j.hadfield@ed.ac.uk>

Diff between MCMCglmm versions 2.28 dated 2019-02-08 and 2.29 dated 2019-04-24

 DESCRIPTION                       |    8 -
 MD5                               |  146 ++++++++++-----------
 R/MCMCglmm.R                      |  255 +++++++++++++++++++-------------------
 R/buildZ.R                        |   10 -
 R/predict.MCMCglmm.R              |    2 
 inst/doc/CourseNotes.Rnw          |    2 
 inst/doc/CourseNotes.pdf          |binary
 inst/doc/Overview.pdf             |binary
 vignettes/CourseNotes.Rnw         |    2 
 vignettes/Figures/CourseNotes.Rnw |    2 
 vignettes/Figures/buildCN.R       |    6 
 vignettes/Lecture1-006.pdf        |binary
 vignettes/Lecture1-011.pdf        |binary
 vignettes/Lecture1-015.pdf        |binary
 vignettes/Lecture1-023.pdf        |binary
 vignettes/Lecture1-027.pdf        |binary
 vignettes/Lecture1-034.pdf        |binary
 vignettes/Lecture1-041.pdf        |    4 
 vignettes/Lecture1-049.pdf        |binary
 vignettes/Lecture1-052.pdf        |binary
 vignettes/Lecture1-055.pdf        |binary
 vignettes/Lecture1-058.pdf        |binary
 vignettes/Lecture1-060.pdf        |binary
 vignettes/Lecture1-065.pdf        |binary
 vignettes/Lecture1-071.pdf        |binary
 vignettes/Lecture1-075.pdf        |binary
 vignettes/Lecture2-007.pdf        |binary
 vignettes/Lecture2-019.pdf        |binary
 vignettes/Lecture2-023.pdf        |binary
 vignettes/Lecture2-029.pdf        |binary
 vignettes/Lecture2-030.pdf        |binary
 vignettes/Lecture2-037.pdf        |binary
 vignettes/Lecture2-038.pdf        |binary
 vignettes/Lecture2-046.pdf        |binary
 vignettes/Lecture2-050.pdf        |binary
 vignettes/Lecture2-052.pdf        |binary
 vignettes/Lecture2-055.pdf        |binary
 vignettes/Lecture2-066.pdf        |binary
 vignettes/Lecture2-068.pdf        |binary
 vignettes/Lecture2-070.pdf        |binary
 vignettes/Lecture2-072.pdf        |binary
 vignettes/Lecture2-074.pdf        |binary
 vignettes/Lecture2-081.pdf        |binary
 vignettes/Lecture2-085.pdf        |binary
 vignettes/Lecture2.tex            |    4 
 vignettes/Lecture3-005.pdf        |binary
 vignettes/Lecture3-018.pdf        |binary
 vignettes/Lecture3-025.pdf        |binary
 vignettes/Lecture3-028.pdf        |binary
 vignettes/Lecture4-005.pdf        |binary
 vignettes/Lecture4-011.pdf        |binary
 vignettes/Lecture4-014.pdf        |binary
 vignettes/Lecture4-017.pdf        |binary
 vignettes/Lecture4-022.pdf        |binary
 vignettes/Lecture4-026.pdf        |binary
 vignettes/Lecture4-030.pdf        |binary
 vignettes/Lecture4-034.pdf        |binary
 vignettes/Lecture4-037.pdf        |binary
 vignettes/Lecture4-040.pdf        |binary
 vignettes/Lecture4.tex            |    2 
 vignettes/Lecture5-011.pdf        |binary
 vignettes/Lecture5-016.pdf        |    4 
 vignettes/Lecture5-024.pdf        |binary
 vignettes/Lecture5-029.pdf        |binary
 vignettes/Lecture5-039.pdf        |binary
 vignettes/Lecture5-043.pdf        |binary
 vignettes/Lecture5-046.pdf        |binary
 vignettes/Lecture6-006.pdf        |binary
 vignettes/Lecture8-005.pdf        |binary
 vignettes/Lecture8-012.pdf        |binary
 vignettes/Lecture8-015.pdf        |binary
 vignettes/Lecture8-018.pdf        |binary
 vignettes/Lecture8-021.pdf        |binary
 vignettes/Lecture8-023.pdf        |binary
 74 files changed, 228 insertions(+), 219 deletions(-)

More information about MCMCglmm at CRAN
Permanent link

Package binnednp updated to version 0.3.0 with previous version 0.2.0 dated 2018-10-24

Title: Nonparametric Estimation for Interval-Grouped Data
Description: Kernel density and distribution estimation for interval-grouped data (Reyes, Francisco-Fernandez and Cao 2016, 2017) <doi:10.1080/10485252.2016.1163348>, <doi:10.1007/s11749-017-0523-9>, (Gonzalez-Andujar, Francisco-Fernandez, Cao, Reyes, Urbano, Forcella and Bastida 2016) <doi:10.1111/wre.12216> and nonparametric estimation of seedling emergence indices (Cao, Francisco-Fernandez, Anand, Bastida and Gonzalez-Andujar 2011) <doi:10.1017/S002185961100030X>.
Author: Daniel Barreiro Ures, Basilio B. Fraguela, Ramón Doallo Biempica, Ricardo Cao, Mario Francisco-Fernández, Miguel Reyes
Maintainer: Daniel Barreiro Ures <dbu5293@gmail.com>

Diff between binnednp versions 0.2.0 dated 2018-10-24 and 0.3.0 dated 2019-04-24

 DESCRIPTION                |   10 ++++----
 MD5                        |   16 +++++++-----
 NAMESPACE                  |   13 +++++++---
 R/RcppExports.R            |   56 ++++++++++++++++++++++-----------------------
 R/anv.binned.R             |only
 build/partial.rdb          |binary
 man/anv.binned.Rd          |only
 man/bw.dens.binned.Rd      |    3 +-
 man/bw.dist.binned.Rd      |    6 ++--
 man/bw.dist.binned.boot.Rd |    4 +--
 10 files changed, 58 insertions(+), 50 deletions(-)

More information about binnednp at CRAN
Permanent link

Package rgeos updated to version 0.4-3 with previous version 0.4-2 dated 2018-11-08

Title: Interface to Geometry Engine - Open Source ('GEOS')
Description: Interface to Geometry Engine - Open Source ('GEOS') using the C 'API' for topology operations on geometries. The 'GEOS' library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>), Colin Rundel [aut], Edzer Pebesma [ctb], Rainer Stuetz [ctb], Karl Ove Hufthammer [ctb], Patrick Giraudoux [ctb], Martin Davis [cph, ctb], Sandro Santilli [cph, ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

Diff between rgeos versions 0.4-2 dated 2018-11-08 and 0.4-3 dated 2019-04-24

 rgeos-0.4-2/rgeos/man/bbox2SP.rd             |only
 rgeos-0.4-3/rgeos/ChangeLog                  |   62 +++++++++++++++++++++++++++
 rgeos-0.4-3/rgeos/DESCRIPTION                |   15 +++---
 rgeos-0.4-3/rgeos/MD5                        |   30 ++++++-------
 rgeos-0.4-3/rgeos/R/rgeos_buffer.R           |    2 
 rgeos-0.4-3/rgeos/configure                  |   58 ++++++++++++++++++++-----
 rgeos-0.4-3/rgeos/configure.ac               |   32 ++++++++++++-
 rgeos-0.4-3/rgeos/inst/ChangeLog             |   62 +++++++++++++++++++++++++++
 rgeos-0.4-3/rgeos/inst/SVN_VERSION           |    2 
 rgeos-0.4-3/rgeos/man/bbox2SP.Rd             |only
 rgeos-0.4-3/rgeos/man/linref-gInterpolate.Rd |    7 +--
 rgeos-0.4-3/rgeos/man/linref-gProject.Rd     |    7 +--
 rgeos-0.4-3/rgeos/man/misc-gBuffer.Rd        |    1 
 rgeos-0.4-3/rgeos/man/misc-gNearestPoints.Rd |    7 ---
 rgeos-0.4-3/rgeos/man/pred-unary-gIsValid.Rd |    2 
 rgeos-0.4-3/rgeos/src/Makevars.win           |   15 +++---
 rgeos-0.4-3/rgeos/tools/winlibs.R            |    8 ++-
 17 files changed, 247 insertions(+), 63 deletions(-)

More information about rgeos at CRAN
Permanent link

Package missDeaths updated to version 2.5.1 with previous version 2.5 dated 2017-05-14

Title: Simulating and Analyzing Time to Event Data in the Presence of Population Mortality
Description: Implements two methods: a nonparametric risk adjustment and a data imputation method that use general population mortality tables to allow a correct analysis of time to disease recurrence. Also includes a powerful set of object oriented survival data simulation functions.
Author: Tomaz Stupnik [aut, cre], Maja Pohar Perme [ctb]
Maintainer: Tomaz Stupnik <tomaz.stupnik@guest.arnes.si>

Diff between missDeaths versions 2.5 dated 2017-05-14 and 2.5.1 dated 2019-04-24

 DESCRIPTION  |    8 ++++----
 MD5          |    4 ++--
 src/Makevars |    5 +----
 3 files changed, 7 insertions(+), 10 deletions(-)

More information about missDeaths at CRAN
Permanent link

Package memisc updated to version 0.99.17.2 with previous version 0.99.17.1 dated 2019-03-18

Title: Management of Survey Data and Presentation of Analysis Results
Description: An infrastructure for the management of survey data including value labels, definable missing values, recoding of variables, production of code books, and import of (subsets of) 'SPSS' and 'Stata' files is provided. Further, the package allows to produce tables and data frames of arbitrary descriptive statistics and (almost) publication-ready tables of regression model estimates, which can be exported to 'LaTeX' and HTML.
Author: Martin Elff (with contributions from Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, Achim Zeileis)
Maintainer: Martin Elff <memisc@elff.eu>

Diff between memisc versions 0.99.17.1 dated 2019-03-18 and 0.99.17.2 dated 2019-04-24

 DESCRIPTION  |    6 +++---
 MD5          |    4 ++--
 src/Makevars |    1 -
 3 files changed, 5 insertions(+), 6 deletions(-)

More information about memisc at CRAN
Permanent link

Package CoordinateCleaner updated to version 2.0-11 with previous version 2.0-9 dated 2019-04-02

Title: Automated Cleaning of Occurrence Records from Biological Collections
Description: Automated flagging of common spatial and temporal errors in biological and paleontological collection data, for the use in conservation, ecology and paleontology. Includes automated tests to easily flag (and exclude) records assigned to country or province centroid, the open ocean, the headquarters of the Global Biodiversity Information Facility, urban areas or the location of biodiversity institutions (museums, zoos, botanical gardens, universities). Furthermore identifies per species outlier coordinates, zero coordinates, identical latitude/longitude and invalid coordinates. Also implements an algorithm to identify data sets with a significant proportion of rounded coordinates. Especially suited for large data sets. The reference for the methodology is: Zizka et al. (2019) doi:10.1111/2041-210X.13152.
Author: Alexander Zizka [aut, cre], Daniele Silvestro [ctb], Tobias Andermann [ctb], Josue Azevedo [ctb], Camila Duarte Ritter [ctb], Daniel Edler [ctb], Harith Farooq [ctb], Andrei Herdean [ctb], Maria Ariza [ctb], Ruud Scharn [ctb], Sten Svanteson [ctb], Niklas Wengstrom [ctb], Vera Zizka [ctb], Alexandre Antonelli [ctb], Irene Steves [rev] (Irene reviewed the package for ropensci, see <https://github.com/ropensci/onboarding/issues/210>), Francisco Rodriguez-Sanchez [rev] (Francisco reviewed the package for ropensci, see <https://github.com/ropensci/onboarding/issues/210>)
Maintainer: Alexander Zizka <alexander.zizka@idiv.de>

Diff between CoordinateCleaner versions 2.0-9 dated 2019-04-02 and 2.0-11 dated 2019-04-24

 DESCRIPTION                                     |    8 +-
 MD5                                             |   22 +++----
 NAMESPACE                                       |    1 
 NEWS.md                                         |   14 ++++
 R/cc_outl.R                                     |   70 +++++++++++++-----------
 R/cc_sea.R                                      |   45 +++++----------
 R/cc_urb.R                                      |   38 ++++---------
 R/clean_coordinates.R                           |    2 
 README.md                                       |    2 
 man/clean_coordinates.Rd                        |    2 
 tests/testthat/test_coordinatelevel_functions.R |   12 +++-
 tests/testthat/test_wrapper_functions.R         |    5 -
 12 files changed, 110 insertions(+), 111 deletions(-)

More information about CoordinateCleaner at CRAN
Permanent link

Package aws.ec2metadata updated to version 0.1.6 with previous version 0.1.5 dated 2018-07-26

Title: Get EC2 Instance Metadata
Description: Retrieve Amazon EC2 instance metadata from within the running instance.
Author: Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>), Jonathan Stott [cre, aut]
Maintainer: Jonathan Stott <jonathan.stott@magairports.com>

Diff between aws.ec2metadata versions 0.1.5 dated 2018-07-26 and 0.1.6 dated 2019-04-24

 DESCRIPTION                 |   22 +++++++++++++---------
 MD5                         |    6 +++---
 R/aws.ec2metadata-package.R |   17 ++++++++++++-----
 man/ec2metadata.Rd          |   13 +++++++++----
 4 files changed, 37 insertions(+), 21 deletions(-)

More information about aws.ec2metadata at CRAN
Permanent link

Package srp updated to version 1.2.0 with previous version 1.1.0 dated 2018-08-29

Title: Smooth-Rough Partitioning of the Regression Coefficients
Description: Performs the change-point detection in regression coefficients of linear model by partitioning the regression coefficients into two classes of smoothness. The change-point and the regression coefficients are jointly estimated.
Author: Hyeyoung Maeng [aut, cre], Piotr Fryzlewicz [aut]
Maintainer: Hyeyoung Maeng <h.maeng@lse.ac.uk>

Diff between srp versions 1.1.0 dated 2018-08-29 and 1.2.0 dated 2019-04-24

 DESCRIPTION          |    9 +++++----
 MD5                  |   37 +++++++++++++++++++------------------
 NAMESPACE            |    1 +
 R/data.R             |    2 +-
 R/ncs.R              |    7 ++++---
 R/predict.R          |   38 ++++++++++++++++++++++++++++++++++----
 R/sic_c.R            |   25 +++++++++++++------------
 R/sic_l.R            |   14 +++++++-------
 R/srp.R              |    4 ++--
 R/srp_c.R            |   25 ++++++++++++++-----------
 R/srp_l.R            |   16 +++++++++-------
 man/ncs.Rd           |    9 ++++++---
 man/predict.srp.c.Rd |    2 +-
 man/predict.srp.l.Rd |only
 man/sic.c.Rd         |   22 ++++++++++++----------
 man/sic.l.Rd         |   16 ++++++++--------
 man/srp.Rd           |    4 ++--
 man/srp.c.Rd         |   21 ++++++++++++---------
 man/srp.l.Rd         |   14 +++++++-------
 man/truebeta.Rd      |    2 +-
 20 files changed, 158 insertions(+), 110 deletions(-)

More information about srp at CRAN
Permanent link

New package SortedEffects with initial version 1.0.0
Package: SortedEffects
Type: Package
Title: Estimation and Inference Methods for Sorted Causal Effects and Classification Analysis
Version: 1.0.0
Authors@R: c( person("Shuowen", "Chen", role = c("aut", "cre"), email = "swchen@bu.edu"), person("Victor", "Chernozhukov", role = "aut", email = "vchern@mit.edu"), person("Ivan", "Fernandez-Val", role = "aut", email = "ivanf@bu.edu"), person("Ye", "Luo", role = "aut", email = "yeluo@ufl.edu"))
Author: Shuowen Chen [aut, cre], Victor Chernozhukov [aut], Ivan Fernandez-Val [aut], Ye Luo [aut]
Maintainer: Shuowen Chen <swchen@bu.edu>
Description: Implements the estimation and inference methods for sorted causal effects and classification analysis as in Chernozhukov, Fernandez-Val and Luo (2018) <doi:10.3982/ECTA14415>.
License: MIT + file LICENSE
Depends: R (>= 2.10)
URL: https://github.com/shuowencs/SortedEffects
Encoding: UTF-8
LazyData: true
Imports: boot, graphics, Hmisc, quantreg, rlist, SparseM, stats
RoxygenNote: 6.1.0
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-04-16 14:58:32 UTC; shuowenchen
Repository: CRAN
Date/Publication: 2019-04-24 08:30:03 UTC

More information about SortedEffects at CRAN
Permanent link

Package MonoPoly updated to version 0.3-10 with previous version 0.3-9 dated 2017-12-20

Title: Functions to Fit Monotone Polynomials
Description: Functions for fitting monotone polynomials to data. Detailed discussion of the methodologies used can be found in Murray, Mueller and Turlach (2013) <doi:10.1007/s00180-012-0390-5> and Murray, Mueller and Turlach (2016) <doi:10.1080/00949655.2016.1139582>.
Author: Berwin A. Turlach [aut, cre] (<https://orcid.org/0000-0001-8795-471X>), Kevin Murray [ctb] (<https://orcid.org/0000-0002-8856-6046>)
Maintainer: Berwin A. Turlach <Berwin.Turlach@gmail.com>

Diff between MonoPoly versions 0.3-9 dated 2017-12-20 and 0.3-10 dated 2019-04-24

 DESCRIPTION                  |   14 +++++++-------
 MD5                          |   10 +++++-----
 R/00makeGradSOS.R            |    2 +-
 build/partial.rdb            |binary
 inst/doc/MonoPoly-manual.pdf |binary
 src/Makevars                 |    2 +-
 6 files changed, 14 insertions(+), 14 deletions(-)

More information about MonoPoly at CRAN
Permanent link

New package rioja with initial version 0.9-21
Package: rioja
Type: Package
Title: Analysis of Quaternary Science Data
Version: 0.9-21
Date: 2019-04-23
Author: Steve Juggins
Maintainer: ORPHANED
Imports: vegan, mgcv, grDevices
Suggests: maptools, foreach
Description: Constrained clustering, transfer functions, and other methods for analysing Quaternary science data.
License: GPL-2
URL: http://www.staff.ncl.ac.uk/stephen.juggins/
NeedsCompilation: yes
Repository: CRAN
Packaged: 2019-04-23 17:53:25 UTC; nsj3
X-CRAN-Original-Maintainer: Steve Juggins <Stephen.Juggins@ncl.ac.uk>
Date/Publication: 2019-04-24 07:50:03 UTC

More information about rioja at CRAN
Permanent link

Package platetools updated to version 0.1.2 with previous version 0.1.1 dated 2018-06-25

Title: Tools and Plots for Multi-Well Plates
Description: Collection of functions for working with multi-well microtitre plates, mainly 96, 384 and 1536 well plates.
Author: Scott Warchal [aut, cre]
Maintainer: Scott Warchal <scott.warchal@gmail.com>

Diff between platetools versions 0.1.1 dated 2018-06-25 and 0.1.2 dated 2019-04-24

 DESCRIPTION                         |   12 ++---
 MD5                                 |   84 ++++++++++++++++++------------------
 NAMESPACE                           |    2 
 R/b_grid.R                          |   30 ++++++++----
 R/b_map.R                           |   35 ++++++++++-----
 R/bhit_map.R                        |   28 +++++++-----
 R/fill_plate.R                      |   33 ++++++++++----
 R/hit_grid.R                        |   44 ++++++++++--------
 R/hit_map.R                         |   27 ++++++-----
 R/med_smooth.R                      |   20 +++++---
 R/num_to_well.R                     |    4 +
 R/pc_grid.R                         |   19 ++------
 R/pc_map.R                          |    6 +-
 R/pchit_grid.R                      |    6 +-
 R/pchit_map.R                       |   14 +-----
 R/plate_map.R                       |   29 ++++--------
 R/plot_wrapper.R                    |   53 +++++++++++++++++-----
 R/raw_grid.R                        |   21 +++------
 R/raw_map.R                         |   18 +++----
 R/read_map.R                        |   27 ++++-------
 R/set_block.R                       |    8 +--
 R/well_to_num.R                     |   30 +++---------
 R/z_grid.R                          |   39 ++++++++++------
 R/z_map.R                           |   13 ++---
 man/b_grid.Rd                       |   27 ++++++++---
 man/b_map.Rd                        |   16 ++++++
 man/bhit_map.Rd                     |   13 +++++
 man/hit_grid.Rd                     |   11 +++-
 man/hit_map.Rd                      |   12 +++--
 man/med_smooth.Rd                   |   11 ++++
 man/pc_grid.Rd                      |    6 +-
 man/pc_map.Rd                       |    4 +
 man/pchit_grid.Rd                   |    6 +-
 man/pchit_map.Rd                    |    5 +-
 man/plt1536.Rd                      |    6 ++
 man/plt384.Rd                       |    6 ++
 man/plt96.Rd                        |    6 ++
 man/raw_grid.Rd                     |    4 +
 man/raw_map.Rd                      |    4 +
 man/z_grid.Rd                       |   12 +++--
 man/z_map.Rd                        |    4 +
 tests/testthat/test-missing_wells.R |   22 ++++-----
 tests/testthat/test-read_map.R      |    3 -
 43 files changed, 452 insertions(+), 328 deletions(-)

More information about platetools at CRAN
Permanent link

Package MedSurvey updated to version 1.1.1.0 with previous version 1.1.0 dated 2019-04-02

Title: Mediation Analysis for Complex Surveys
Description: It is a computer tool to conduct mediation analysis for complex surveys using multi-stage sampling. Specifically, the mediation analysis method using balanced repeated replications was proposed by Mai, Ha, and Soulakova (2019) <DOI:10.1080/10705511.2018.1559065>. The development of 'MedSurvey' was sponsored by American Lebanese Syrian Associated Charities (ALSAC). However, the contents of MedSurvey do not necessarily represent the policy of the ALSAC.
Author: Yujiao Mai [aut], Jiahui Xu [aut], Deo Kumar Srivastava [aut], Hui Zhang [aut,cre]
Maintainer: Hui Zhang <hui.zhang@stjude.org>

Diff between MedSurvey versions 1.1.0 dated 2019-04-02 and 1.1.1.0 dated 2019-04-24

 DESCRIPTION |   12 ++++++------
 MD5         |    2 +-
 2 files changed, 7 insertions(+), 7 deletions(-)

More information about MedSurvey at CRAN
Permanent link

Package jsonify updated to version 0.2.1 with previous version 0.2.0 dated 2019-01-10

Title: Converts 'R' Objects to Javascript Object Notation (JSON)
Description: Converts 'R' objects into Javascript Object Notation (JSON) using the 'rapidjsonr' library <https://CRAN.R-project.org/package=rapidjsonr>.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <dcooley@symbolix.com.au>

Diff between jsonify versions 0.2.0 dated 2019-01-10 and 0.2.1 dated 2019-04-24

 jsonify-0.2.0/jsonify/inst/include/jsonify/to_json.hpp                 |only
 jsonify-0.2.0/jsonify/inst/include/jsonify/to_json/dataframe.hpp       |only
 jsonify-0.2.0/jsonify/inst/include/jsonify/to_json/vectors.hpp         |only
 jsonify-0.2.0/jsonify/inst/include/jsonify/to_json/writers.hpp         |only
 jsonify-0.2.0/jsonify/inst/include/jsonify/utils.hpp                   |only
 jsonify-0.2.1/jsonify/DESCRIPTION                                      |   10 
 jsonify-0.2.1/jsonify/MD5                                              |   29 
 jsonify-0.2.1/jsonify/NAMESPACE                                        |    3 
 jsonify-0.2.1/jsonify/NEWS.md                                          |    5 
 jsonify-0.2.1/jsonify/R/pretty.R                                       |    6 
 jsonify-0.2.1/jsonify/R/to_json.R                                      |   19 
 jsonify-0.2.1/jsonify/build/vignette.rds                               |binary
 jsonify-0.2.1/jsonify/inst/doc/jsonify.html                            |  356 +++++-----
 jsonify-0.2.1/jsonify/inst/include/jsonify/to_json/writers/complex.hpp |   11 
 jsonify-0.2.1/jsonify/inst/include/jsonify/to_json/writers/simple.hpp  |    9 
 jsonify-0.2.1/jsonify/man/as.json.Rd                                   |only
 jsonify-0.2.1/jsonify/tests/testthat/test-as_json.R                    |only
 jsonify-0.2.1/jsonify/tests/testthat/test-to_json_dataframe.R          |   41 +
 jsonify-0.2.1/jsonify/tests/testthat/test-to_json_vectors.R            |   26 
 19 files changed, 305 insertions(+), 210 deletions(-)

More information about jsonify at CRAN
Permanent link

Package ibd updated to version 1.5 with previous version 1.4 dated 2018-07-23

Title: Incomplete Block Designs
Description: A collection of several utility functions related to binary incomplete block designs. The package contains function to generate A- and D-efficient binary incomplete block designs with given numbers of treatments, number of blocks and block size. The package also contains function to generate an incomplete block design with specified concurrence matrix. There are functions to generate balanced treatment incomplete block designs and incomplete block designs for test versus control treatments comparisons with specified concurrence matrix. Package also allows performing analysis of variance of data and computing estimated marginal means of factors from experiments using a connected incomplete block design. Tests of hypothesis of treatment contrasts in incomplete block design set up is supported.
Author: B N Mandal [aut, cre]
Maintainer: B N Mandal <mandal.stat@gmail.com>

Diff between ibd versions 1.4 dated 2018-07-23 and 1.5 dated 2019-04-24

 DESCRIPTION    |   12 +++++++-----
 MD5            |   16 ++++++++--------
 NAMESPACE      |    7 +++++--
 R/ibd.R        |   11 ++++++-----
 man/aov.ibd.Rd |    4 ++--
 man/bibd.Rd    |    2 ++
 man/btib.Rd    |    1 +
 man/btib1.Rd   |    3 ++-
 man/ibd.Rd     |    2 ++
 9 files changed, 35 insertions(+), 23 deletions(-)

More information about ibd at CRAN
Permanent link

Package airGRteaching updated to version 0.2.6.27 with previous version 0.2.6.14 dated 2019-04-05

Title: Teaching Hydrological Modelling with the GR Rainfall-Runoff Models ('Shiny' Interface Included)
Description: Add-on package to the 'airGR' package that simplifies its use and is aimed at being used for teaching hydrology. The package provides 1) three functions that allow to complete very simply a hydrological modelling exercise 2) plotting functions to help students to explore observed data and to interpret the results of calibration and simulation of the GR ('Génie rural') models 3) a 'Shiny' graphical interface that allows for displaying the impact of model parameters on hydrographs and models internal variables.
Author: Olivier Delaigue [aut, cre] (<https://orcid.org/0000-0002-7668-8468>), Laurent Coron [aut] (<https://orcid.org/0000-0002-1503-6204>), Pierre Brigode [aut] (<https://orcid.org/0000-0001-8257-0741>), Guillaume Thirel [ctb] (<https://orcid.org/0000-0002-1444-1830>)
Maintainer: Olivier Delaigue <airGR@irstea.fr>

Diff between airGRteaching versions 0.2.6.14 dated 2019-04-05 and 0.2.6.27 dated 2019-04-24

 DESCRIPTION                                |    8 +-
 MD5                                        |   20 ++---
 NEWS                                       |   25 ++++++
 R/CalGR.R                                  |    2 
 R/PrepGR.R                                 |    4 -
 R/ShinyGR.R                                |    6 +
 R/SimGR.R                                  |    4 -
 R/dyplot.default.R                         |    2 
 inst/ShinyGR/server.R                      |  111 +++++++++++++++++------------
 inst/ShinyGR/www/fig/logo_airGR_square.svg |   18 ++--
 man/PrepGR.Rd                              |    6 +
 11 files changed, 128 insertions(+), 78 deletions(-)

More information about airGRteaching at CRAN
Permanent link

Package nanostringr updated to version 0.1.3 with previous version 0.1.2 dated 2019-04-03

Title: Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data
Description: Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.
Author: Derek Chiu [aut, cre], Aline Talhouk [aut], Samuel Leung [aut]
Maintainer: Derek Chiu <dchiu@bccrc.ca>

Diff between nanostringr versions 0.1.2 dated 2019-04-03 and 0.1.3 dated 2019-04-24

 DESCRIPTION                        |    8 ++++----
 MD5                                |   16 ++++++++--------
 NEWS.md                            |   10 ++++++++++
 R/CCplot.R                         |    6 ++++--
 R/NanoStringQC.R                   |   19 ++++++++++++-------
 R/check.R                          |   11 +++++++----
 inst/doc/Overview.html             |    8 ++++----
 tests/testthat/test-NanoStringQC.R |   20 ++++++++++++++++++++
 tests/testthat/test-parse.R        |    8 ++++++++
 9 files changed, 77 insertions(+), 29 deletions(-)

More information about nanostringr at CRAN
Permanent link

Tue, 23 Apr 2019

Package SimRVSequences updated to version 0.1.3 with previous version 0.1.2 dated 2019-03-12

Title: Simulate Genetic Sequence Data for Pedigrees
Description: Methods to simulate genetic sequence data for pedigrees, with functionality to simulate genetic heterogeneity among pedigrees. Christina Nieuwoudt, Angela Brooks-Wilson, and Jinko Graham (2019) <doi:10.1101/534552>.
Author: Christina Nieuwoudt [aut, cre], Jinko Graham [aut]
Maintainer: Christina Nieuwoudt <cnieuwou@sfu.ca>

Diff between SimRVSequences versions 0.1.2 dated 2019-03-12 and 0.1.3 dated 2019-04-23

 DESCRIPTION                       |    6 -
 MD5                               |   14 +--
 R/sim_StudySeqFunctions.R         |   15 ++++
 inst/doc/SimRVSequences.Rmd       |    2 
 inst/doc/SimRVSequences.html      |  136 +++++++++++++++++++-------------------
 man/sim_RVstudy.Rd                |    2 
 tests/testthat/test_sim_RVstudy.R |   13 +++
 vignettes/SimRVSequences.Rmd      |    2 
 8 files changed, 111 insertions(+), 79 deletions(-)

More information about SimRVSequences at CRAN
Permanent link

Package testthat updated to version 2.1.1 with previous version 2.1.0 dated 2019-04-22

Title: Unit Testing for R
Description: Software testing is important, but, in part because it is frustrating and boring, many of us avoid it. 'testthat' is a testing framework for R that is easy learn and use, and integrates with your existing 'workflow'.
Author: Hadley Wickham [aut, cre], RStudio [cph, fnd], R Core team [ctb] (Implementation of utils::recover())
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between testthat versions 2.1.0 dated 2019-04-22 and 2.1.1 dated 2019-04-23

 DESCRIPTION                            |    6 +++---
 MD5                                    |   16 ++++++++--------
 NEWS.md                                |    4 ++++
 tests/testthat/test-expect-error.R     |    2 ++
 tests/testthat/test-expect-error.txt   |   10 +++++-----
 tests/testthat/test-expect-output.R    |    4 +++-
 tests/testthat/test-expect-setequal.R  |   12 +++++++-----
 tests/testthat/test-expect-warning.R   |    2 ++
 tests/testthat/test-expect-warning.txt |    8 ++++----
 9 files changed, 38 insertions(+), 26 deletions(-)

More information about testthat at CRAN
Permanent link

Package sys updated to version 3.2 with previous version 3.1 dated 2019-03-10

Title: Powerful and Reliable Tools for Running System Commands in R
Description: Drop-in replacements for the base system2() function with fine control and consistent behavior across platforms. Supports clean interruption, timeout, background tasks, and streaming STDIN / STDOUT / STDERR over binary or text connections. Arguments on Windows automatically get encoded and quoted to work on different locales.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>), Gábor Csárdi [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between sys versions 3.1 dated 2019-03-10 and 3.2 dated 2019-04-23

 DESCRIPTION                   |    6 ++---
 LICENSE                       |    2 -
 MD5                           |   11 +++++----
 NEWS                          |    6 +++++
 src/exec.c                    |    5 ++++
 src/win32/exec.c              |   50 +++++++++++++++++++++++++++++++++---------
 tests/testthat/test-nesting.R |only
 7 files changed, 61 insertions(+), 19 deletions(-)

More information about sys at CRAN
Permanent link

New package robustSingleCell with initial version 0.1.1
Package: robustSingleCell
Type: Package
Title: Robust Clustering of Single Cell RNA-Seq Data
Version: 0.1.1
Authors@R: c( person("Assaf", "Magen", email = "assaf.magen@nih.gov", role = c("aut", "cph"), comment = c(ORCID = "0000-0001-5473-274X")), person("Meng", "Wang", email = "szmamie@live.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3453-7805")), person("Hao", "Chen", role = "ctb") )
Description: Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis from Magen 2019 <doi:10.1101/543199>.
Depends: R (>= 3.2.0)
Imports: utils, grDevices, graphics, Matrix, limma, biomaRt, dplyr, ggplot2, reshape2, GGally, ggrepel, RColorBrewer, gplots, ggpubr, cccd, rslurm, Rtsne, igraph, scales, RANN, Rcpp
LinkingTo: Rcpp
License: Artistic-2.0
URL: https://github.com/asmagen/robustSingleCell
BugReports: https://github.com/asmagen/robustSingleCell/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Suggests: GEOquery, knitr, rmarkdown, testthat
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2019-04-23 17:57:39 UTC; szmamie
Author: Assaf Magen [aut, cph] (<https://orcid.org/0000-0001-5473-274X>), Meng Wang [aut, cre] (<https://orcid.org/0000-0002-3453-7805>), Hao Chen [ctb]
Maintainer: Meng Wang <szmamie@live.com>
Repository: CRAN
Date/Publication: 2019-04-23 22:00:02 UTC

More information about robustSingleCell at CRAN
Permanent link

Package rIP updated to version 1.1.1 with previous version 0.1.1 dated 2018-10-16

Title: Detects Fraud in Online Surveys by Tracing, Scoring, and Visualizing IP Addresses
Description: Takes an array of IPs and the keys for the services the user wishes to use (IP Hub, IP Intel, and Proxycheck), and passes these to all respective APIs. Returns a dataframe with the IP addresses (used for merging), country, ISP, labels for non-US IP Addresses, VPS use, and recommendations for blocking. The package also provides optional visualization tools for checking the distributions.
Author: Ryan Kennedy [aut, cre], Philip Waggoner [aut], Scott Clifford [ctb]
Maintainer: Ryan Kennedy <rkennedy@uh.edu>

Diff between rIP versions 0.1.1 dated 2018-10-16 and 1.1.1 dated 2019-04-23

 DESCRIPTION      |   21 +++---
 MD5              |    8 +-
 R/rIP.R          |  181 ++++++++++++++++++++++++++++++++++++++++++++++---------
 README.md        |   44 +++++++++++--
 man/getIPinfo.Rd |   30 ++++++---
 5 files changed, 227 insertions(+), 57 deletions(-)

More information about rIP at CRAN
Permanent link

Package RAMClustR updated to version 1.0.6 with previous version 1.0.4 dated 2019-02-13

Title: Mass Spectrometry Metabolomics Feature Clustering and Interpretation
Description: A feature clustering algorithm for non-targeted mass spectrometric metabolomics data. This method is compatible with gas and liquid chromatography coupled mass spectrometry, including indiscriminant tandem mass spectromery <DOI: 10.1021/ac501530d> data.
Author: Corey D. Broeckling, Fayyaz Afsar, Steffan Neumann, Asa Ben-Hur, Jessica Prenni.
Maintainer: "Broeckling,Corey" <Corey.Broeckling@ColoState.EDU>

Diff between RAMClustR versions 1.0.4 dated 2019-02-13 and 1.0.6 dated 2019-04-23

 ChangeLog                    |    9 ++-
 DESCRIPTION                  |   11 ++--
 MD5                          |   24 ++++----
 NAMESPACE                    |    2 
 R/annotate.R                 |    6 +-
 R/do.findmain.R              |    1 
 R/get.synonyms.R             |    1 
 R/getClassyFire.R            |   37 +++++++++++--
 R/import.msfinder.formulas.R |   11 +++-
 R/ramclustR.R                |  118 ++++++++++++++++++++++++++++++-------------
 inst/doc/RAMClustR.html      |    4 -
 man/annotate.Rd              |    4 -
 man/getClassyFire.Rd         |    7 +-
 13 files changed, 167 insertions(+), 68 deletions(-)

More information about RAMClustR at CRAN
Permanent link

Package PHEindicatormethods updated to version 1.1.2 with previous version 1.1.1 dated 2019-04-18

Title: Common Public Health Statistics and their Confidence Intervals
Description: Functions to calculate commonly used public health statistics and their confidence intervals using methods approved for use in the production of Public Health England indicators such as those presented via Fingertips (<http://fingertips.phe.org.uk/>). It provides functions for the generation of proportions, crude rates, means, directly standardised rates, indirectly standardised rates, standardised mortality ratios, slope and relative index of inequality and life expectancy. Statistical methods are referenced in the following publications. Breslow NE, Day NE (1987) <doi:10.1002/sim.4780080614>. Dobson et al (1991) <doi:10.1002/sim.4780100317>. Armitage P, Berry G (2002) <doi:10.1002/9780470773666>. Wilson EB. (1927) <doi:10.1080/01621459.1927.10502953>. Altman DG et al (2000, ISBN: 978-0-727-91375-3). Chiang CL. (1968, ISBN: 978-0-882-75200-6). Newell C. (1994, ISBN: 978-0-898-62451-9). Eayres DP, Williams ES (2004) <doi:10.1136/jech.2003.009654>. Silcocks PBS et al (2001) <doi:10.1136/jech.55.1.38>. Low and Low (2004) <doi:10.1093/pubmed/fdh175>.
Author: Anderson Georgina [aut, cre], Fox Sebastian [ctb], Francis Matthew [ctb], Fryers Paul [ctb], Clegg Emma [ctb]
Maintainer: Anderson Georgina <georgina.anderson@phe.gov.uk>

Diff between PHEindicatormethods versions 1.1.1 dated 2019-04-18 and 1.1.2 dated 2019-04-23

 DESCRIPTION                                       |    6 
 MD5                                               |   14 
 NEWS.md                                           |    5 
 inst/doc/DSR-vignette.html                        |  108 ++---
 inst/doc/Introduction_to_PHEindicatormethods.html |  466 +++++++++++-----------
 inst/doc/WorkedExamples_phe_sii.html              |  156 +++----
 tests/testthat/testLifeExpectancy.R               |   22 -
 tests/testthat/testProportions.R                  |    4 
 8 files changed, 393 insertions(+), 388 deletions(-)

More information about PHEindicatormethods at CRAN
Permanent link

Package newsmap updated to version 0.6.7 with previous version 0.6.4 dated 2019-02-24

Title: Semi-Supervised Model for Geographical Document Classification
Description: Semi-supervised model for geographical document classification (Watanabe 2018) <doi:10.1080/21670811.2017.1293487>. This package currently contains seed dictionaries in English, German, French, Spanish, Japanese, Russian and Chinese (Simplified and Traditional).
Author: Kohei Watanabe [aut, cre, cph], Stefan Müller [aut], Dani Madrid-Morales [aut], Katerina Tertytchnaya [aut], Ke Cheng [aut], Chung-hong Chan [aut], Claude Grasland [aut]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>

Diff between newsmap versions 0.6.4 dated 2019-02-24 and 0.6.7 dated 2019-04-23

 DESCRIPTION                             |    8 ++--
 MD5                                     |   13 ++++---
 NAMESPACE                               |    1 
 NEWS.md                                 |   24 ++++++++-----
 R/textmodel_newsmap.R                   |   46 ++++++++++++++++++++++----
 data/data_dictionary_newsmap_ja.RData   |binary
 man/afe.Rd                              |only
 tests/testthat/test-textmodel_newsmap.R |   55 ++++++++++++++++++++++----------
 8 files changed, 105 insertions(+), 42 deletions(-)

More information about newsmap at CRAN
Permanent link

Package MAINT.Data updated to version 2.1.1 with previous version 2.0.0 dated 2018-10-17

Title: Model and Analyse Interval Data
Description: Implements methodologies for modelling interval data by Normal and Skew-Normal distributions, considering appropriate parameterizations of the variance-covariance matrix that takes into account the intrinsic nature of interval data, and lead to four different possible configuration structures. The Skew-Normal parameters can be estimated by maximum likelihood, while Normal parameters may be estimated by maximum likelihood or robust trimmed maximum likelihood methods.
Author: Pedro Duarte Silva <psilva@porto.ucp.pt>, Paula Brito <mpbrito.fep.up.pt>
Maintainer: Pedro Duarte Silva <psilva@porto.ucp.pt>

Diff between MAINT.Data versions 2.0.0 dated 2018-10-17 and 2.1.1 dated 2019-04-23

 MAINT.Data-2.0.0/MAINT.Data/src/Makevars              |only
 MAINT.Data-2.1.1/MAINT.Data/CHANGELOG                 |   23 ++
 MAINT.Data-2.1.1/MAINT.Data/DESCRIPTION               |    8 
 MAINT.Data-2.1.1/MAINT.Data/MD5                       |   23 +-
 MAINT.Data-2.1.1/MAINT.Data/NAMESPACE                 |    2 
 MAINT.Data-2.1.1/MAINT.Data/R/DACrossVal.R            |  179 ++++++++++--------
 MAINT.Data-2.1.1/MAINT.Data/R/IData.R                 |  149 ++++++++------
 MAINT.Data-2.1.1/MAINT.Data/R/mle.R                   |    2 
 MAINT.Data-2.1.1/MAINT.Data/man/DACrossVal.Rd         |    8 
 MAINT.Data-2.1.1/MAINT.Data/man/MAINT.Data-package.Rd |    4 
 MAINT.Data-2.1.1/MAINT.Data/man/Robda-methods.Rd      |   12 -
 MAINT.Data-2.1.1/MAINT.Data/man/lda-methods.Rd        |    3 
 MAINT.Data-2.1.1/MAINT.Data/man/qda-methods.Rd        |    3 
 13 files changed, 231 insertions(+), 185 deletions(-)

More information about MAINT.Data at CRAN
Permanent link

Package kdtools updated to version 0.4.1 with previous version 0.3.1 dated 2018-04-26

Title: Tools for Working with Multidimensional Data
Description: Provides various tools for working with multidimensional data in R and C++, including extremely fast nearest-neighbor- and range- queries without the overhead of linked tree nodes.
Author: Timothy Keitt [aut, cre]
Maintainer: Timothy Keitt <tkeitt@gmail.com>

Diff between kdtools versions 0.3.1 dated 2018-04-26 and 0.4.1 dated 2019-04-23

 DESCRIPTION                              |    8 
 MD5                                      |   52 ++---
 NAMESPACE                                |    9 +
 NEWS.md                                  |    9 +
 R/RcppExports.R                          |   12 +
 R/arrayvec.R                             |    2 
 R/kdtools.R                              |   58 ++++++
 build/vignette.rds                       |binary
 inst/doc/kdtools.R                       |    1 
 inst/doc/kdtools.Rmd                     |    3 
 inst/doc/kdtools.html                    |   86 ++++-----
 inst/doc/methods.R                       |   47 ++++-
 inst/doc/methods.Rmd                     |  131 +++++++++++---
 inst/doc/methods.html                    |  195 +++++++++++++--------
 inst/include/kdtools.h                   |  279 ++++++++++++++++++++++++-------
 man/figures/README-unnamed-chunk-1-1.png |binary
 man/kdsort.Rd                            |   14 +
 man/nneighb.Rd                           |    4 
 man/search.Rd                            |    4 
 src/RcppExports.cpp                      |   41 ++++
 src/arrayvec.h                           |   16 +
 src/kdtools.cpp                          |  142 ++++++++++++---
 tests/testthat/test_nn.R                 |   36 +++-
 tests/testthat/test_search.R             |   37 +++-
 tests/testthat/test_sort.R               |   16 +
 vignettes/kdtools.Rmd                    |    3 
 vignettes/methods.Rmd                    |  131 +++++++++++---
 27 files changed, 1023 insertions(+), 313 deletions(-)

More information about kdtools at CRAN
Permanent link

Package dMod updated to version 1.0.0 with previous version 0.4.2 dated 2018-08-09

Title: Dynamic Modeling and Parameter Estimation in ODE Models
Description: The framework provides functions to generate ODEs of reaction networks, parameter transformations, observation functions, residual functions, etc. The framework follows the paradigm that derivative information should be used for optimization whenever possible. Therefore, all major functions produce and can handle expressions for symbolic derivatives.
Author: Daniel Kaschek
Maintainer: Daniel Kaschek <daniel.kaschek@gmail.com>

Diff between dMod versions 0.4.2 dated 2018-08-09 and 1.0.0 dated 2019-04-23

 DESCRIPTION                   |   16 -
 MD5                           |  123 +++++++------
 NAMESPACE                     |   11 +
 R/classes.R                   |   45 ++++
 R/dMod.R                      |    3 
 R/data.R                      |   29 +--
 R/dataClass.R                 |   66 ++++---
 R/eqnClass.R                  |    7 
 R/eventClass.R                |    2 
 R/objClass.R                  |   63 +++---
 R/parClass.R                  |   12 -
 R/parameters.R                |    9 
 R/plots.R                     |    2 
 R/prdClass.R                  |   27 +-
 R/prediction.R                |   34 ++-
 R/statistics.R                |  388 ++++++++++++++++++++++++++++++------------
 R/steadyStates.R              |only
 R/symmetryDetection.R         |    8 
 R/tools.R                     |   51 +++--
 R/trust.R                     |   65 +++++--
 R/trustL1.R                   |only
 build/vignette.rds            |binary
 inst/CITATION                 |only
 inst/code/sbmlAmiciDmod.py    |only
 inst/doc/dMod.html            |   33 ++-
 inst/examples/datalist.R      |    3 
 inst/examples/errmodel.R      |   14 +
 inst/examples/events.R        |  141 +++++++++++++--
 inst/examples/odemodel.R      |   20 ++
 inst/examples/plotting.R      |  106 ++++++-----
 inst/examples/steadystates.R  |only
 inst/examples/sumdatalist.R   |    4 
 inst/examples/test_LOQ.R      |   35 ++-
 man/P.Rd                      |    3 
 man/Pexpl.Rd                  |    5 
 man/Pimpl.Rd                  |    3 
 man/Y.Rd                      |    9 
 man/as.eqnvec.Rd              |    4 
 man/compile.Rd                |    5 
 man/covariates.Rd             |    2 
 man/datalist.Rd               |   25 +-
 man/eventlist.Rd              |    2 
 man/forcingsSymb.Rd           |    4 
 man/funC0.Rd                  |    6 
 man/getParameters.Rd          |    3 
 man/match.fnargs.Rd           |only
 man/msParframe.Rd             |only
 man/mstrust.Rd                |   11 -
 man/normL2.Rd                 |    5 
 man/odemodel.Rd               |   26 ++
 man/parlist.Rd                |    2 
 man/parvec.Rd                 |    4 
 man/plotCombined.Rd           |  111 ++++++------
 man/plotData.Rd               |  106 ++++++-----
 man/plotPrediction.Rd         |  106 ++++++-----
 man/plotProfile.Rd            |    3 
 man/plotResiduals.Rd          |    3 
 man/plus-.datalist.Rd         |    4 
 man/profile.Rd                |    8 
 man/python_version_request.Rd |only
 man/python_version_rpython.Rd |only
 man/python_version_sys.Rd     |only
 man/res.Rd                    |    4 
 man/steadyStates.Rd           |only
 man/strpad.Rd                 |    3 
 man/symmetryDetection.Rd      |   16 +
 man/trust.Rd                  |   23 ++
 man/write.eqnlist.Rd          |    2 
 68 files changed, 1201 insertions(+), 624 deletions(-)

More information about dMod at CRAN
Permanent link

Package dbplyr updated to version 1.4.0 with previous version 1.3.0 dated 2019-01-09

Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to work with remote database tables as if they are in-memory data frames. Basic features works with any database that has a 'DBI' back end; more advanced features require 'SQL' translation to be provided by the package author.
Author: Hadley Wickham [aut, cre], Edgar Ruiz [aut], RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between dbplyr versions 1.3.0 dated 2019-01-09 and 1.4.0 dated 2019-04-23

 dbplyr-1.3.0/dbplyr/R/cache.r                                       |only
 dbplyr-1.3.0/dbplyr/R/compat-purrr.R                                |only
 dbplyr-1.3.0/dbplyr/R/data-lahman.r                                 |only
 dbplyr-1.3.0/dbplyr/R/data-nycflights13.r                           |only
 dbplyr-1.3.0/dbplyr/R/db-compute.R                                  |only
 dbplyr-1.3.0/dbplyr/R/db-mysql.r                                    |only
 dbplyr-1.3.0/dbplyr/R/db-odbc-access.R                              |only
 dbplyr-1.3.0/dbplyr/R/db-odbc-hive.R                                |only
 dbplyr-1.3.0/dbplyr/R/db-odbc-impala.R                              |only
 dbplyr-1.3.0/dbplyr/R/db-odbc-mssql.R                               |only
 dbplyr-1.3.0/dbplyr/R/db-odbc-oracle.R                              |only
 dbplyr-1.3.0/dbplyr/R/db-odbc-redshift.R                            |only
 dbplyr-1.3.0/dbplyr/R/db-odbc-teradata.R                            |only
 dbplyr-1.3.0/dbplyr/R/db-postgres.r                                 |only
 dbplyr-1.3.0/dbplyr/R/db-roracle.R                                  |only
 dbplyr-1.3.0/dbplyr/R/db-sqlite.r                                   |only
 dbplyr-1.3.0/dbplyr/R/dbi-s3.r                                      |only
 dbplyr-1.3.0/dbplyr/R/do.r                                          |only
 dbplyr-1.3.0/dbplyr/R/explain.r                                     |only
 dbplyr-1.3.0/dbplyr/R/partial-eval.r                                |only
 dbplyr-1.3.0/dbplyr/R/query.r                                       |only
 dbplyr-1.3.0/dbplyr/R/simulate.r                                    |only
 dbplyr-1.3.0/dbplyr/R/sql-escape.r                                  |only
 dbplyr-1.3.0/dbplyr/R/sql-generic.R                                 |only
 dbplyr-1.3.0/dbplyr/R/sql-optimise.R                                |only
 dbplyr-1.3.0/dbplyr/R/sql-query.R                                   |only
 dbplyr-1.3.0/dbplyr/R/sql-render.R                                  |only
 dbplyr-1.3.0/dbplyr/R/src-sql.r                                     |only
 dbplyr-1.3.0/dbplyr/R/tbl-sql.r                                     |only
 dbplyr-1.3.0/dbplyr/R/testthat.r                                    |only
 dbplyr-1.3.0/dbplyr/R/translate-sql-base.r                          |only
 dbplyr-1.3.0/dbplyr/R/translate-sql-clause.r                        |only
 dbplyr-1.3.0/dbplyr/R/translate-sql-helpers.r                       |only
 dbplyr-1.3.0/dbplyr/R/translate-sql-odbc.R                          |only
 dbplyr-1.3.0/dbplyr/R/translate-sql-window.r                        |only
 dbplyr-1.3.0/dbplyr/R/translate-sql.r                               |only
 dbplyr-1.3.0/dbplyr/R/utils-format.r                                |only
 dbplyr-1.3.0/dbplyr/R/utils.r                                       |only
 dbplyr-1.3.0/dbplyr/R/window.R                                      |only
 dbplyr-1.3.0/dbplyr/inst/doc/sql-translation.R                      |only
 dbplyr-1.3.0/dbplyr/inst/doc/sql-translation.Rmd                    |only
 dbplyr-1.3.0/dbplyr/inst/doc/sql-translation.html                   |only
 dbplyr-1.3.0/dbplyr/tests/testthat/explain-sqlite.txt               |only
 dbplyr-1.3.0/dbplyr/tests/testthat/helper-output.R                  |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-arrange.r                   |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-collect.R                   |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-colwise.R                   |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-compute.R                   |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-copy_to.R                   |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-distinct.R                  |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-do.R                        |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-explain.R                   |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-filter.r                    |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-group-by.r                  |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-group-size.R                |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-joins-consistent.R          |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-joins.R                     |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-lazy-ops.R                  |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-mutate.r                    |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-output.R                    |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-partial_eval.R              |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-pull.R                      |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-schema.R                    |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-select.r                    |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-sets.R                      |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-sql-escape.r                |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-sql-optimise.R              |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-sql-query-select.txt        |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-sql-query.R                 |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-sql-render.R                |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-summarise.r                 |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-tbl-sql.r                   |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-MySQL.R           |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-access.r          |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-hive.R            |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-impala.R          |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-literals.R        |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-math.R            |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-mssql.r           |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-odbc.R            |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-oracle.R          |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-postgresql.R      |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-sql-helpers.r     |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-sql-window.r      |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-sqlite.R          |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-teradata.r        |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-vectorised.R      |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-window.R          |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate.r                 |only
 dbplyr-1.3.0/dbplyr/tests/testthat/test-win_over.R                  |only
 dbplyr-1.3.0/dbplyr/vignettes/notes/mysql-setup.Rmd                 |only
 dbplyr-1.3.0/dbplyr/vignettes/notes/postgres-setup.Rmd              |only
 dbplyr-1.3.0/dbplyr/vignettes/sql-translation.Rmd                   |only
 dbplyr-1.4.0/dbplyr/DESCRIPTION                                     |   42 -
 dbplyr-1.4.0/dbplyr/MD5                                             |  330 +++++-----
 dbplyr-1.4.0/dbplyr/NAMESPACE                                       |   41 -
 dbplyr-1.4.0/dbplyr/NEWS.md                                         |only
 dbplyr-1.4.0/dbplyr/R/backend-.R                                    |only
 dbplyr-1.4.0/dbplyr/R/backend-access.R                              |only
 dbplyr-1.4.0/dbplyr/R/backend-hive.R                                |only
 dbplyr-1.4.0/dbplyr/R/backend-impala.R                              |only
 dbplyr-1.4.0/dbplyr/R/backend-mssql.R                               |only
 dbplyr-1.4.0/dbplyr/R/backend-mysql.R                               |only
 dbplyr-1.4.0/dbplyr/R/backend-odbc.R                                |only
 dbplyr-1.4.0/dbplyr/R/backend-oracle.R                              |only
 dbplyr-1.4.0/dbplyr/R/backend-postgres.R                            |only
 dbplyr-1.4.0/dbplyr/R/backend-sqlite.R                              |only
 dbplyr-1.4.0/dbplyr/R/backend-teradata.R                            |only
 dbplyr-1.4.0/dbplyr/R/build-sql.R                                   |only
 dbplyr-1.4.0/dbplyr/R/data-cache.R                                  |only
 dbplyr-1.4.0/dbplyr/R/data-lahman.R                                 |only
 dbplyr-1.4.0/dbplyr/R/data-nycflights13.R                           |only
 dbplyr-1.4.0/dbplyr/R/escape.R                                      |only
 dbplyr-1.4.0/dbplyr/R/explain.R                                     |only
 dbplyr-1.4.0/dbplyr/R/ident.R                                       |    6 
 dbplyr-1.4.0/dbplyr/R/lazy-ops.R                                    |  193 +----
 dbplyr-1.4.0/dbplyr/R/memdb.R                                       |   16 
 dbplyr-1.4.0/dbplyr/R/partial-eval.R                                |only
 dbplyr-1.4.0/dbplyr/R/query-join.R                                  |only
 dbplyr-1.4.0/dbplyr/R/query-select.R                                |only
 dbplyr-1.4.0/dbplyr/R/query-semi-join.R                             |only
 dbplyr-1.4.0/dbplyr/R/query-set-op.R                                |only
 dbplyr-1.4.0/dbplyr/R/query.R                                       |only
 dbplyr-1.4.0/dbplyr/R/simulate.R                                    |only
 dbplyr-1.4.0/dbplyr/R/sql-build.R                                   |  176 +----
 dbplyr-1.4.0/dbplyr/R/sql-expr.R                                    |   38 -
 dbplyr-1.4.0/dbplyr/R/sql.R                                         |   14 
 dbplyr-1.4.0/dbplyr/R/src-sql.R                                     |only
 dbplyr-1.4.0/dbplyr/R/src_dbi.R                                     |    7 
 dbplyr-1.4.0/dbplyr/R/tbl-lazy.R                                    |  261 +------
 dbplyr-1.4.0/dbplyr/R/tbl-sql.R                                     |only
 dbplyr-1.4.0/dbplyr/R/test-frame.R                                  |   25 
 dbplyr-1.4.0/dbplyr/R/testthat.R                                    |only
 dbplyr-1.4.0/dbplyr/R/translate-sql-clause.R                        |only
 dbplyr-1.4.0/dbplyr/R/translate-sql-conditional.R                   |only
 dbplyr-1.4.0/dbplyr/R/translate-sql-helpers.R                       |only
 dbplyr-1.4.0/dbplyr/R/translate-sql-paste.R                         |   10 
 dbplyr-1.4.0/dbplyr/R/translate-sql-quantile.R                      |only
 dbplyr-1.4.0/dbplyr/R/translate-sql-string.R                        |only
 dbplyr-1.4.0/dbplyr/R/translate-sql-window.R                        |only
 dbplyr-1.4.0/dbplyr/R/translate-sql.R                               |only
 dbplyr-1.4.0/dbplyr/R/utils-format.R                                |only
 dbplyr-1.4.0/dbplyr/R/utils.R                                       |only
 dbplyr-1.4.0/dbplyr/R/verb-arrange.R                                |only
 dbplyr-1.4.0/dbplyr/R/verb-compute.R                                |only
 dbplyr-1.4.0/dbplyr/R/verb-copy-to.R                                |only
 dbplyr-1.4.0/dbplyr/R/verb-distinct.R                               |only
 dbplyr-1.4.0/dbplyr/R/verb-do-query.R                               |only
 dbplyr-1.4.0/dbplyr/R/verb-do.R                                     |only
 dbplyr-1.4.0/dbplyr/R/verb-filter.R                                 |only
 dbplyr-1.4.0/dbplyr/R/verb-group_by.R                               |only
 dbplyr-1.4.0/dbplyr/R/verb-head.R                                   |only
 dbplyr-1.4.0/dbplyr/R/verb-joins.R                                  |only
 dbplyr-1.4.0/dbplyr/R/verb-mutate.R                                 |only
 dbplyr-1.4.0/dbplyr/R/verb-pull.R                                   |only
 dbplyr-1.4.0/dbplyr/R/verb-select.R                                 |only
 dbplyr-1.4.0/dbplyr/R/verb-set-ops.R                                |only
 dbplyr-1.4.0/dbplyr/R/verb-summarise.R                              |only
 dbplyr-1.4.0/dbplyr/R/verb-window.R                                 |only
 dbplyr-1.4.0/dbplyr/R/zzz.R                                         |    7 
 dbplyr-1.4.0/dbplyr/README.md                                       |   25 
 dbplyr-1.4.0/dbplyr/build/vignette.rds                              |binary
 dbplyr-1.4.0/dbplyr/inst/doc/dbplyr.R                               |    2 
 dbplyr-1.4.0/dbplyr/inst/doc/dbplyr.Rmd                             |   14 
 dbplyr-1.4.0/dbplyr/inst/doc/dbplyr.html                            |  113 +--
 dbplyr-1.4.0/dbplyr/inst/doc/new-backend.Rmd                        |    4 
 dbplyr-1.4.0/dbplyr/inst/doc/new-backend.html                       |    6 
 dbplyr-1.4.0/dbplyr/inst/doc/reprex.R                               |only
 dbplyr-1.4.0/dbplyr/inst/doc/reprex.Rmd                             |only
 dbplyr-1.4.0/dbplyr/inst/doc/reprex.html                            |only
 dbplyr-1.4.0/dbplyr/inst/doc/sql.R                                  |only
 dbplyr-1.4.0/dbplyr/inst/doc/sql.Rmd                                |only
 dbplyr-1.4.0/dbplyr/inst/doc/sql.html                               |only
 dbplyr-1.4.0/dbplyr/inst/doc/translation-function.R                 |only
 dbplyr-1.4.0/dbplyr/inst/doc/translation-function.Rmd               |only
 dbplyr-1.4.0/dbplyr/inst/doc/translation-function.html              |only
 dbplyr-1.4.0/dbplyr/inst/doc/translation-verb.R                     |only
 dbplyr-1.4.0/dbplyr/inst/doc/translation-verb.Rmd                   |only
 dbplyr-1.4.0/dbplyr/inst/doc/translation-verb.html                  |only
 dbplyr-1.4.0/dbplyr/man/arrange.tbl_lazy.Rd                         |only
 dbplyr-1.4.0/dbplyr/man/build_sql.Rd                                |   19 
 dbplyr-1.4.0/dbplyr/man/collapse.tbl_sql.Rd                         |only
 dbplyr-1.4.0/dbplyr/man/copy_to.src_sql.Rd                          |    2 
 dbplyr-1.4.0/dbplyr/man/db_copy_to.Rd                               |   14 
 dbplyr-1.4.0/dbplyr/man/do.tbl_sql.Rd                               |    2 
 dbplyr-1.4.0/dbplyr/man/escape.Rd                                   |   26 
 dbplyr-1.4.0/dbplyr/man/ident.Rd                                    |    4 
 dbplyr-1.4.0/dbplyr/man/join.tbl_sql.Rd                             |   41 -
 dbplyr-1.4.0/dbplyr/man/lahman.Rd                                   |    2 
 dbplyr-1.4.0/dbplyr/man/lazy_ops.Rd                                 |    6 
 dbplyr-1.4.0/dbplyr/man/memdb_frame.Rd                              |   12 
 dbplyr-1.4.0/dbplyr/man/named_commas.Rd                             |    2 
 dbplyr-1.4.0/dbplyr/man/nycflights13.Rd                             |    2 
 dbplyr-1.4.0/dbplyr/man/partial_eval.Rd                             |   11 
 dbplyr-1.4.0/dbplyr/man/simulate_dbi.Rd                             |only
 dbplyr-1.4.0/dbplyr/man/sql_build.Rd                                |   33 -
 dbplyr-1.4.0/dbplyr/man/sql_escape_logical.Rd                       |    2 
 dbplyr-1.4.0/dbplyr/man/sql_expr.Rd                                 |   35 -
 dbplyr-1.4.0/dbplyr/man/sql_quote.Rd                                |    2 
 dbplyr-1.4.0/dbplyr/man/sql_variant.Rd                              |   61 +
 dbplyr-1.4.0/dbplyr/man/src_sql.Rd                                  |    2 
 dbplyr-1.4.0/dbplyr/man/tbl_lazy.Rd                                 |   51 -
 dbplyr-1.4.0/dbplyr/man/tbl_sql.Rd                                  |    2 
 dbplyr-1.4.0/dbplyr/man/testing.Rd                                  |    2 
 dbplyr-1.4.0/dbplyr/man/translate_sql.Rd                            |   11 
 dbplyr-1.4.0/dbplyr/man/win_over.Rd                                 |   17 
 dbplyr-1.4.0/dbplyr/man/window_order.Rd                             |    2 
 dbplyr-1.4.0/dbplyr/tests/testthat/helper-src.R                     |    9 
 dbplyr-1.4.0/dbplyr/tests/testthat/sql                              |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-backend-.R                  |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-backend-access.R            |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-backend-hive.R              |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-backend-impala.R            |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-backend-mssql.R             |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-backend-mysql.R             |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-backend-odbc.R              |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-backend-oracle.R            |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-backend-postgres.R          |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-backend-sqlite.R            |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-backend-teradata.R          |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-escape.R                    |  123 +++
 dbplyr-1.4.0/dbplyr/tests/testthat/test-explain-sqlite.txt          |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-ident.R                     |    7 
 dbplyr-1.4.0/dbplyr/tests/testthat/test-partial-eval.R              |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-query-join-print.txt        |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-query-join.R                |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-query-select-print.txt      |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-query-select.R              |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-query-semi-join-print.txt   |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-query-semi-join.R           |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-query-set-op-print.txt      |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-query-set-op.R              |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-sql-build.R                 |  187 -----
 dbplyr-1.4.0/dbplyr/tests/testthat/test-sql-expr.R                  |   18 
 dbplyr-1.4.0/dbplyr/tests/testthat/test-sql.R                       |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-tbl-lazy-print.txt          |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-tbl-lazy.R                  |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-tbl-sql.R                   |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-translate-sql-conditional.R |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-translate-sql-helpers.R     |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-translate-sql-paste.R       |   25 
 dbplyr-1.4.0/dbplyr/tests/testthat/test-translate-sql-quantile.R    |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-translate-sql-string.R      |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-translate-sql-window.R      |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-translate-sql.R             |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-utils.R                     |   37 -
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-arrange.R              |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-compute.R              |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-copy-to.R              |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-distinct.R             |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-do.R                   |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-filter.R               |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-group_by.R             |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-head.R                 |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-joins.R                |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-mutate.R               |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-pull.R                 |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-select.R               |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-set-ops.R              |only
 dbplyr-1.4.0/dbplyr/tests/testthat/test-verb-summarise.R            |only
 dbplyr-1.4.0/dbplyr/vignettes/dbplyr.Rmd                            |   14 
 dbplyr-1.4.0/dbplyr/vignettes/new-backend.Rmd                       |    4 
 dbplyr-1.4.0/dbplyr/vignettes/notes/_mysql-setup.Rmd                |only
 dbplyr-1.4.0/dbplyr/vignettes/notes/_postgres-setup.Rmd             |only
 dbplyr-1.4.0/dbplyr/vignettes/reprex.Rmd                            |only
 dbplyr-1.4.0/dbplyr/vignettes/sql.Rmd                               |only
 dbplyr-1.4.0/dbplyr/vignettes/translation-function.Rmd              |only
 dbplyr-1.4.0/dbplyr/vignettes/translation-verb.Rmd                  |only
 268 files changed, 901 insertions(+), 1216 deletions(-)

More information about dbplyr at CRAN
Permanent link

Package Brundle updated to version 1.0.9 with previous version 1.0.8 dated 2018-02-15

Title: Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data
Description: Inter-sample condition variability is a key challenge of normalising ChIP-seq data. This implementation uses either spike-in or a second factor as a control for normalisation. Input can either be from 'DiffBind' or a matrix formatted for 'DESeq2'. The output is either a 'DiffBind' object or the default 'DESeq2' output. Either can then be processed as normal. Supporting manuscript Guertin, Markowetz and Holding (2017) <doi:10.1101/182261>.
Author: Andrew N Holding
Maintainer: Andrew N Holding <andrew.holding@cruk.cam.ac.uk>

Diff between Brundle versions 1.0.8 dated 2018-02-15 and 1.0.9 dated 2019-04-23

 DESCRIPTION                        |    8 ++++----
 MD5                                |   32 ++++++++++++++++----------------
 R/brundle.R                        |    1 +
 README.md                          |    1 +
 data/dbaControl.rda                |binary
 data/dbaExperiment.rda             |binary
 data/jg.conditions.rda             |binary
 data/jg.controlCountsTreated.rda   |binary
 data/jg.controlCountsUntreated.rda |binary
 data/jg.controlPeakset.rda         |binary
 data/jg.controlPeaksetDeSeq.rda    |binary
 data/jg.controlResultsDeseq.rda    |binary
 data/jg.experimentPeakset.rda      |binary
 data/jg.experimentResultsDeseq.rda |binary
 man/Brundle.Rd                     |    4 ++--
 man/jg.applyNormalisation.Rd       |    4 ++--
 man/jg.plotDeSeq.Rd                |    1 +
 17 files changed, 27 insertions(+), 24 deletions(-)

More information about Brundle at CRAN
Permanent link

Package randomizr updated to version 0.18.0 with previous version 0.16.1 dated 2018-07-11

Title: Easy-to-Use Tools for Common Forms of Random Assignment and Sampling
Description: Generates random assignments for common experimental designs and random samples for common sampling designs.
Author: Alexander Coppock [aut, cre], Jasper Cooper [ctb], Neal Fultz [ctb] (C version of restricted partitions)
Maintainer: Alexander Coppock <acoppock@gmail.com>

Diff between randomizr versions 0.16.1 dated 2018-07-11 and 0.18.0 dated 2019-04-23

 DESCRIPTION                                   |    9 
 MD5                                           |  112 +--
 R/block_and_cluster_ra.R                      |   22 
 R/block_ra.R                                  |   39 +
 R/cluster_ra.R                                |   20 
 R/cluster_rs.R                                |   63 +-
 R/complete_ra.R                               |   45 +
 R/complete_rs.R                               |   46 +
 R/declare_ra.R                                |    5 
 R/declare_rs.R                                |    6 
 R/generated_methods.R                         |   48 +
 R/helper_functions.R                          |  582 ++++++++++++++------
 R/simple_ra.R                                 |   19 
 R/simple_rs.R                                 |   17 
 R/strata_and_cluster_rs.R                     |   22 
 R/strata_rs.R                                 |   32 +
 R/zzz.R                                       |   32 -
 build/vignette.rds                            |binary
 inst/doc/randomizr_vignette.Rmd               |   12 
 inst/doc/randomizr_vignette.html              |  734 +++++++++++++++++---------
 man/block_and_cluster_ra.Rd                   |   11 
 man/block_and_cluster_ra_probabilities.Rd     |   11 
 man/block_ra.Rd                               |   22 
 man/block_ra_probabilities.Rd                 |   12 
 man/cluster_ra.Rd                             |   10 
 man/cluster_ra_probabilities.Rd               |   11 
 man/cluster_rs.Rd                             |    8 
 man/cluster_rs_probabilities.Rd               |    9 
 man/complete_ra.Rd                            |   15 
 man/complete_ra_probabilities.Rd              |   10 
 man/complete_rs.Rd                            |   13 
 man/complete_rs_probabilities.Rd              |    7 
 man/conduct_ra.Rd                             |   15 
 man/declare_ra.Rd                             |   13 
 man/declare_rs.Rd                             |    8 
 man/draw_rs.Rd                                |    9 
 man/obtain_condition_probabilities.Rd         |   11 
 man/obtain_inclusion_probabilities.Rd         |   10 
 man/simple_ra.Rd                              |   11 
 man/simple_ra_probabilities.Rd                |   11 
 man/simple_rs.Rd                              |    9 
 man/simple_rs_probabilities.Rd                |    9 
 man/strata_and_cluster_rs.Rd                  |    7 
 man/strata_and_cluster_rs_probabilities.Rd    |    8 
 man/strata_rs.Rd                              |   17 
 man/strata_rs_probabilities.Rd                |    9 
 tests/testthat/test-block_ra.R                |   23 
 tests/testthat/test-cluster_ra.R              |   13 
 tests/testthat/test-cluster_rs.R              |   18 
 tests/testthat/test-complete_ra.R             |   17 
 tests/testthat/test-complete_rs.R             |   14 
 tests/testthat/test-simple_ra.R               |   10 
 tests/testthat/test-simple_rs.R               |   13 
 tests/testthat/test-strata_rs.R               |   34 +
 tests/testthat/test_assignment_declarations.R |   16 
 tests/testthat/test_sampling_declarations.R   |   15 
 vignettes/randomizr_vignette.Rmd              |   12 
 57 files changed, 1705 insertions(+), 631 deletions(-)

More information about randomizr at CRAN
Permanent link

Package Umpire updated to version 1.3.6 with previous version 1.3.5 dated 2018-05-18

Title: Simulating Realistic Gene Expression Data
Description: The Ultimate Microrray Prediction, Reality and Inference Engine (UMPIRE) is a package to facilitate the simulation of realistic microarray data sets with link to associate outcomes. See Zhang and Coombes (2012) <doi:10.1186/1471-2105-13-S13-S1>.
Author: Kevin R. Coombes, Jiexin Zhang
Maintainer: Kevin R. Coombes <krc@silicovore.com>

Diff between Umpire versions 1.3.5 dated 2018-05-18 and 1.3.6 dated 2019-04-23

 DESCRIPTION                      |    8 ++++----
 MD5                              |   28 ++++++++++++++++++----------
 build/vignette.rds               |binary
 inst/doc/Umpire.pdf              |binary
 tests/t01-indNormal.R            |    1 +
 tests/t01-indNormal.Rout.save    |only
 tests/t02-1-engine.R             |    1 +
 tests/t02-1-engine.Rout.save     |only
 tests/t02-indLogNorm.R           |    1 +
 tests/t02-indLogNorm.Rout.save   |only
 tests/t03-mvn.R                  |    1 +
 tests/t03-mvn.Rout.save          |only
 tests/t05-noise.R                |    1 +
 tests/t05-noise.Rout.save        |only
 tests/t06-engineAct.R            |    1 +
 tests/t06-engineAct.Rout.save    |only
 tests/t07-cancerModel.R          |    1 +
 tests/t07-cancerModel.Rout.save  |only
 tests/t08-cancerEngine.Rout.save |only
 19 files changed, 29 insertions(+), 14 deletions(-)

More information about Umpire at CRAN
Permanent link

Package Thresher updated to version 1.1.1 with previous version 1.1.0 dated 2019-03-07

Title: Threshing and Reaping for Principal Components
Description: Defines the classes used to identify outliers (threshing) and compute the number of significant principal components and number of clusters (reaping) in a joint application of PCA and hierarchical clustering. See Wang et al., 2018, <doi:10.1186/s12859-017-1998-9>.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>

Diff between Thresher versions 1.1.0 dated 2019-03-07 and 1.1.1 dated 2019-04-23

 DESCRIPTION               |    8 ++++----
 MD5                       |   20 ++++++++++----------
 data/savedSims.rda        |binary
 inst/doc/Thresher.pdf     |binary
 tests/01-label.Rout.save  |    6 +++---
 tests/01-remap.R          |    1 +
 tests/01-remap.Rout.save  |    3 ++-
 tests/02-thresh.R         |    3 ++-
 tests/02-thresh.Rout.save |    9 +++++----
 tests/04-reap.R           |    1 +
 tests/04-reap.Rout.save   |    3 ++-
 11 files changed, 30 insertions(+), 24 deletions(-)

More information about Thresher at CRAN
Permanent link

Package PCDimension updated to version 1.1.10 with previous version 1.1.9 dated 2018-05-18

Title: Finding the Number of Significant Principal Components
Description: Implements methods to automate the Auer-Gervini graphical Bayesian approach for determining the number of significant principal components. Automation uses clustering, change points, or simple statistical models to distinguish "long" from "short" steps in a graph showing the posterior number of components as a function of a prior parameter. See <doi:10.1101/237883>.
Author: Kevin R. Coombes, Min Wang
Maintainer: Kevin R. Coombes <krc@silicovore.com>

Diff between PCDimension versions 1.1.9 dated 2018-05-18 and 1.1.10 dated 2019-04-23

 DESCRIPTION              |    8 ++++----
 MD5                      |   12 ++++++------
 build/vignette.rds       |binary
 data/spca.rda            |binary
 inst/doc/PCDimension.pdf |binary
 tests/00-auer.R          |    1 +
 tests/00-auer.Rout.save  |    7 ++++---
 7 files changed, 15 insertions(+), 13 deletions(-)

More information about PCDimension at CRAN
Permanent link

Package Modeler updated to version 3.4.4 with previous version 3.4.3 dated 2018-05-18

Title: Classes and Methods for Training and Using Binary Prediction Models
Description: Defines classes and methods to learn models and use them to predict binary outcomes. These are generic tools, but we also include specific examples for many common classifiers.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>

Diff between Modeler versions 3.4.3 dated 2018-05-18 and 3.4.4 dated 2019-04-23

 DESCRIPTION                |    8 ++++----
 MD5                        |   14 +++++++-------
 build/vignette.rds         |binary
 inst/doc/Modeler.pdf       |binary
 tests/t00-filter.R         |    1 +
 tests/t00-filter.Rout.save |    7 ++++---
 tests/t00-pruner.R         |    1 +
 tests/t00-pruner.Rout.save |    7 ++++---
 8 files changed, 21 insertions(+), 17 deletions(-)

More information about Modeler at CRAN
Permanent link

Package bmixture updated to version 1.3 with previous version 1.2 dated 2018-07-05

Title: Bayesian Estimation for Finite Mixture of Distributions
Description: Provides statistical tools for Bayesian estimation for finite mixture of distributions, mainly mixture of Gamma, Normal and t-distributions. The package is implemented the recent improvements in Bayesian literature for the finite mixture of distributions, including Mohammadi and et al. (2013) <doi:10.1007/s00180-012-0323-3> and Mohammadi and Salehi-Rad (2012) <doi:10.1080/03610918.2011.588358>.
Author: Reza Mohammadi <https://orcid.org/0000-0001-9538-0648>
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>

Diff between bmixture versions 1.2 dated 2018-07-05 and 1.3 dated 2019-04-23

 DESCRIPTION              |    9 +-
 MD5                      |   73 +++++++++++----------
 NAMESPACE                |    9 --
 NEWS                     |    6 -
 R/bmixgamma.R            |   88 ++++++++++++--------------
 R/bmixnorm.R             |  128 +++++++++++++++++++-------------------
 R/bmixnorm_bdmcmc.R      |  127 +++++++++++++++++++------------------
 R/bmixt.R                |   89 ++++++++++++--------------
 R/mixgamma.R             |   24 ++++---
 R/mixnorm.R              |   28 ++++----
 R/mixt.R                 |   24 ++++---
 R/rdirichlet.R           |   14 ++--
 inst/CITATION            |    6 -
 man/bmixgamma.Rd         |   72 +++++++++------------
 man/bmixnorm.Rd          |   60 ++++++++---------
 man/bmixt.Rd             |   62 ++++++++----------
 man/bmixture-package.Rd  |   18 ++---
 man/mixgamma.Rd          |   21 ++----
 man/mixnorm.Rd           |   19 ++---
 man/mixt.Rd              |   21 ++----
 man/plot.bmixgamma.Rd    |    8 +-
 man/plot.bmixnorm.Rd     |    8 +-
 man/plot.bmixt.Rd        |    8 +-
 man/print.bmixgamma.Rd   |    4 -
 man/print.bmixnorm.Rd    |    4 -
 man/print.bmixt.Rd       |    4 -
 man/rdirichlet.Rd        |   11 +--
 man/summary.bmixgamma.Rd |    4 -
 man/summary.bmixnorm.Rd  |    4 -
 man/summary.bmixt.Rd     |    4 -
 src/bmix_gamma.cpp       |  121 +++++++++++++++++++----------------
 src/bmix_norm.cpp        |  136 +++++++++++++++++++++-------------------
 src/bmix_t.cpp           |  158 ++++++++++++++++++++++++-----------------------
 src/dmix_hat_x_seq.cpp   |   63 +++++++++---------
 src/funs_in_mcmc.cpp     |   21 +++---
 src/funs_in_mcmc.h       |   17 ++---
 src/init.c               |   10 --
 src/util_bmixture.h      |only
 38 files changed, 743 insertions(+), 740 deletions(-)

More information about bmixture at CRAN
Permanent link

Package PreProcess updated to version 3.1.6 with previous version 3.1.5 dated 2018-05-16

Title: Basic Functions for Pre-Processing Microarrays
Description: Provides classes to pre-process microarray gene expression data as part of the OOMPA collection of packages described at <http://oompa.r-forge.r-project.org/>.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>

Diff between PreProcess versions 3.1.5 dated 2018-05-16 and 3.1.6 dated 2019-04-23

 PreProcess-3.1.5/PreProcess/tests/test07-complete-channel.Rout.save |only
 PreProcess-3.1.6/PreProcess/DESCRIPTION                             |    8 +-
 PreProcess-3.1.6/PreProcess/MD5                                     |   28 +++++-----
 PreProcess-3.1.6/PreProcess/build/vignette.rds                      |binary
 PreProcess-3.1.6/PreProcess/inst/doc/oompa-prep.pdf                 |binary
 PreProcess-3.1.6/PreProcess/tests/test01-utility.R                  |    1 
 PreProcess-3.1.6/PreProcess/tests/test01-utility.Rout.save          |   10 +--
 PreProcess-3.1.6/PreProcess/tests/test03-channel-type.Rout.save     |    6 +-
 PreProcess-3.1.6/PreProcess/tests/test04-channel.R                  |    1 
 PreProcess-3.1.6/PreProcess/tests/test04-channel.Rout.save          |    7 +-
 PreProcess-3.1.6/PreProcess/tests/test05-processor.R                |    1 
 PreProcess-3.1.6/PreProcess/tests/test05-processor.Rout.save        |    7 +-
 PreProcess-3.1.6/PreProcess/tests/test06-pipeline.R                 |    1 
 PreProcess-3.1.6/PreProcess/tests/test06-pipeline.Rout.save         |    7 +-
 PreProcess-3.1.6/PreProcess/tests/test07-complete-channel.R         |    1 
 PreProcess-3.1.6/PreProcess/tests/test07-complete-channel.Rout      |only
 16 files changed, 43 insertions(+), 35 deletions(-)

More information about PreProcess at CRAN
Permanent link

Package oompaBase updated to version 3.2.7 with previous version 3.2.6 dated 2018-05-17

Title: Class Unions, Matrix Operations, and Color Schemes for OOMPA
Description: Provides the class unions that must be preloaded in order for the basic tools in the OOMPA (Object-Oriented Microarray and Proteomics Analysis) project to be defined and loaded. It also includes vectorized operations for row-by-row means, variances, and t-tests. Finally, it provides new color schemes. Details on the packages in the OOMPA project can be found at <http://oompa.r-forge.r-project.org/>.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>

Diff between oompaBase versions 3.2.6 dated 2018-05-17 and 3.2.7 dated 2019-04-23

 DESCRIPTION                   |    8 ++++----
 MD5                           |   10 +++++-----
 build/vignette.rds            |binary
 inst/doc/oompa.pdf            |binary
 tests/testMatrixOps.R         |    1 +
 tests/testMatrixOps.Rout.save |   10 +++++-----
 6 files changed, 15 insertions(+), 14 deletions(-)

More information about oompaBase at CRAN
Permanent link

Package gprofiler2 updated to version 0.1.3 with previous version 0.1.2 dated 2019-04-08

Title: Interface to the 'g:Profiler' Toolset
Description: A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler>). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.
Author: Liis Kolberg <liis.kolberg@ut.ee>, Uku Raudvere <uku.raudvere@ut.ee>
Maintainer: Liis Kolberg <liis.kolberg@ut.ee>

Diff between gprofiler2 versions 0.1.2 dated 2019-04-08 and 0.1.3 dated 2019-04-23

 DESCRIPTION    |    6 +++---
 MD5            |    4 ++--
 R/gprofiler2.R |    9 ++++++---
 3 files changed, 11 insertions(+), 8 deletions(-)

More information about gprofiler2 at CRAN
Permanent link

Package CrossValidate updated to version 2.3.3 with previous version 2.3.2 dated 2018-05-17

Title: Classes and Methods for Cross Validation of "Class Prediction" Algorithms
Description: Defines classes and methods to cross-validate various binary classification algorithms used for "class prediction" problems.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>

Diff between CrossValidate versions 2.3.2 dated 2018-05-17 and 2.3.3 dated 2019-04-23

 DESCRIPTION            |    8 ++++----
 MD5                    |   10 +++++-----
 build/vignette.rds     |binary
 inst/doc/CrossVal.pdf  |binary
 tests/testCV.R         |    1 +
 tests/testCV.Rout.save |    7 ++++---
 6 files changed, 14 insertions(+), 12 deletions(-)

More information about CrossValidate at CRAN
Permanent link

Package ClassDiscovery updated to version 3.3.11 with previous version 3.3.9 dated 2018-10-03

Title: Classes and Methods for "Class Discovery" with Microarrays or Proteomics
Description: Defines the classes used for "class discovery" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class discovery primarily consists of unsupervised clustering methods with attempts to assess their statistical significance.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>

Diff between ClassDiscovery versions 3.3.9 dated 2018-10-03 and 3.3.11 dated 2019-04-23

 ClassDiscovery-3.3.11/ClassDiscovery/DESCRIPTION                     |    8 
 ClassDiscovery-3.3.11/ClassDiscovery/MD5                             |   53 +-
 ClassDiscovery-3.3.11/ClassDiscovery/NEWS                            |   11 
 ClassDiscovery-3.3.11/ClassDiscovery/TODO                            |only
 ClassDiscovery-3.3.11/ClassDiscovery/inst/doc/maha-test.pdf          |binary
 ClassDiscovery-3.3.11/ClassDiscovery/inst/doc/oompa-cd.pdf           |binary
 ClassDiscovery-3.3.11/ClassDiscovery/man/cd08-0-PCanova-class.Rd     |    2 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/exprSet-example.R         |    1 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/exprSet-example.Rout.save |    5 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test00-color.Rout.save    |   34 -
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test01-distance.R         |    1 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test01-distance.Rout.save |  101 ++--
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test02-cluster.R          |    1 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test02-cluster.Rout.save  |    7 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test02.1-just.R           |    4 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test02.1-just.Rout.save   |   68 +-
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test03-boot.R             |    1 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test03-boot.Rout.save     |  249 +++++-----
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test04-perturb.R          |    1 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test04-perturb.Rout.save  |  249 +++++-----
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test04.1-gpca.R           |    1 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test04.1-gpca.Rout.save   |   43 -
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test05-spca.R             |    1 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test05-spca.Rout          |only
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test06-mosaic.R           |    1 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test06-mosaic.Rout.save   |  103 ++--
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test07-pcanova.R          |    1 
 ClassDiscovery-3.3.11/ClassDiscovery/tests/test07-pcanova.Rout.save  |   77 +--
 ClassDiscovery-3.3.9/ClassDiscovery/tests/test05-spca.Rout.save      |only
 29 files changed, 528 insertions(+), 495 deletions(-)

More information about ClassDiscovery at CRAN
Permanent link

Package BimodalIndex updated to version 1.1.8 with previous version 1.1.7 dated 2018-10-17

Title: The Bimodality Index
Description: Defines the functions used to compute the bimodal index as defined by Wang et al. (2009) <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2730180/>, <doi:10.4137/CIN.S2846>.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>

Diff between BimodalIndex versions 1.1.7 dated 2018-10-17 and 1.1.8 dated 2019-04-23

 DESCRIPTION                    |    8 ++++----
 MD5                            |    8 ++++----
 inst/doc/bim.pdf               |binary
 tests/test09-bimodal.R         |    1 +
 tests/test09-bimodal.Rout.save |    7 ++++---
 5 files changed, 13 insertions(+), 11 deletions(-)

More information about BimodalIndex at CRAN
Permanent link

Package sdcHierarchies updated to version 0.18 with previous version 0.17 dated 2019-03-07

Title: Create and (Interactively) Modify Nested Hierarchies
Description: Provides functionality to generate, (interactively) modify (by adding, removing and renaming nodes) and convert nested hierarchies between different formats. These tree like structures can be used to define for example complex hierarchical tables used for statistical disclosure control.
Author: Bernhard Meindl [aut, cre]
Maintainer: Bernhard Meindl <Bernhard.Meindl@statistik.gv.at>

Diff between sdcHierarchies versions 0.17 dated 2019-03-07 and 0.18 dated 2019-04-23

 DESCRIPTION                     |    8 
 MD5                             |   19 -
 NAMESPACE                       |    1 
 NEWS.md                         |    9 
 R/hier_grid.R                   |only
 build/vignette.rds              |binary
 inst/doc/usage.R                |   17 +
 inst/doc/usage.Rmd              |   30 ++
 inst/doc/usage.html             |  546 +++++++++++++++++++++++++++++++---------
 man/hier_grid.Rd                |only
 tests/testthat/test_hier_grid.R |only
 vignettes/usage.Rmd             |   30 ++
 12 files changed, 520 insertions(+), 140 deletions(-)

More information about sdcHierarchies at CRAN
Permanent link

Package Polychrome updated to version 1.2.1 with previous version 1.2.0 dated 2019-03-17

Title: Qualitative Palettes with Many Colors
Description: Tools for creating, viewing, and assessing qualitative palettes with many (20-30 or more) colors.
Author: Kevin R. Coombes, Guy Brock
Maintainer: Kevin R. Coombes <krc@silicovore.com>

Diff between Polychrome versions 1.2.0 dated 2019-03-17 and 1.2.1 dated 2019-04-23

 DESCRIPTION                    |    8 ++++----
 MD5                            |   10 +++++-----
 inst/doc/color-deficits.html   |    6 +++---
 inst/doc/creatingPalettes.html |    4 ++--
 tests/testXform.R              |    1 +
 tests/testXform.Rout.save      |    7 ++++---
 6 files changed, 19 insertions(+), 17 deletions(-)

More information about Polychrome at CRAN
Permanent link

Package ClassComparison updated to version 3.1.7 with previous version 3.1.6 dated 2018-05-17

Title: Classes and Methods for "Class Comparison" Problems on Microarrays
Description: Defines the classes used for "class comparison" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class comparison includes tests for differential expression; see Simon's book for details on typical problem types.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>

Diff between ClassComparison versions 3.1.6 dated 2018-05-17 and 3.1.7 dated 2019-04-23

 DESCRIPTION              |    8 ++++----
 MD5                      |   16 ++++++++--------
 TODO                     |    3 +++
 build/vignette.rds       |binary
 inst/doc/oompa-cc.pdf    |binary
 tests/testBum.R          |    1 +
 tests/testBum.Rout.save  |    7 ++++---
 tests/testDiff.R         |    1 +
 tests/testDiff.Rout.save |    5 +++--
 9 files changed, 24 insertions(+), 17 deletions(-)

More information about ClassComparison at CRAN
Permanent link

Package MachineShop updated to version 1.3.0 with previous version 1.2.0 dated 2019-02-15

Title: Machine Learning Models and Tools
Description: Meta-package for statistical and machine learning with a common interface for model fitting, prediction, performance assessment, and presentation of results. Supports predictive modeling of numerical, categorical, and censored time-to-event outcomes and resample (bootstrap and cross-validation) estimation of model performance.
Author: Brian J Smith [aut, cre]
Maintainer: Brian J Smith <brian-j-smith@uiowa.edu>

Diff between MachineShop versions 1.2.0 dated 2019-02-15 and 1.3.0 dated 2019-04-23

 MachineShop-1.2.0/MachineShop/R/setAs.R                  |only
 MachineShop-1.3.0/MachineShop/DESCRIPTION                |   21 
 MachineShop-1.3.0/MachineShop/MD5                        |  229 +
 MachineShop-1.3.0/MachineShop/NAMESPACE                  |   46 
 MachineShop-1.3.0/MachineShop/NEWS.md                    |   40 
 MachineShop-1.3.0/MachineShop/R/AllClasses.R             |  651 -----
 MachineShop-1.3.0/MachineShop/R/MLControl.R              |only
 MachineShop-1.3.0/MachineShop/R/MLMetric.R               |only
 MachineShop-1.3.0/MachineShop/R/MLModel.R                |only
 MachineShop-1.3.0/MachineShop/R/ML_AdaBagModel.R         |    5 
 MachineShop-1.3.0/MachineShop/R/ML_AdaBoostModel.R       |    5 
 MachineShop-1.3.0/MachineShop/R/ML_BARTMachineModel.R    |   13 
 MachineShop-1.3.0/MachineShop/R/ML_BARTModel.R           |   20 
 MachineShop-1.3.0/MachineShop/R/ML_BlackBoostModel.R     |   19 
 MachineShop-1.3.0/MachineShop/R/ML_C50Model.R            |    6 
 MachineShop-1.3.0/MachineShop/R/ML_CForestModel.R        |   17 
 MachineShop-1.3.0/MachineShop/R/ML_CoxModel.R            |   23 
 MachineShop-1.3.0/MachineShop/R/ML_EarthModel.R          |   13 
 MachineShop-1.3.0/MachineShop/R/ML_FDAModel.R            |    3 
 MachineShop-1.3.0/MachineShop/R/ML_GAMBoostModel.R       |   16 
 MachineShop-1.3.0/MachineShop/R/ML_GBMModel.R            |   29 
 MachineShop-1.3.0/MachineShop/R/ML_GLMBoostModel.R       |   23 
 MachineShop-1.3.0/MachineShop/R/ML_GLMModel.R            |   13 
 MachineShop-1.3.0/MachineShop/R/ML_GLMNetModel.R         |   22 
 MachineShop-1.3.0/MachineShop/R/ML_KNNModel.R            |    4 
 MachineShop-1.3.0/MachineShop/R/ML_LARSModel.R           |   13 
 MachineShop-1.3.0/MachineShop/R/ML_LDAModel.R            |    3 
 MachineShop-1.3.0/MachineShop/R/ML_LMModel.R             |   10 
 MachineShop-1.3.0/MachineShop/R/ML_MDAModel.R            |    3 
 MachineShop-1.3.0/MachineShop/R/ML_NNetModel.R           |   10 
 MachineShop-1.3.0/MachineShop/R/ML_NaiveBayesModel.R     |    6 
 MachineShop-1.3.0/MachineShop/R/ML_PLSModel.R            |   15 
 MachineShop-1.3.0/MachineShop/R/ML_POLRModel.R           |   10 
 MachineShop-1.3.0/MachineShop/R/ML_QDAModel.R            |    6 
 MachineShop-1.3.0/MachineShop/R/ML_RPartModel.R          |   17 
 MachineShop-1.3.0/MachineShop/R/ML_RandomForestModel.R   |   11 
 MachineShop-1.3.0/MachineShop/R/ML_RangerModel.R         |   13 
 MachineShop-1.3.0/MachineShop/R/ML_SVMModel.R            |   14 
 MachineShop-1.3.0/MachineShop/R/ML_StackedModel.R        |    8 
 MachineShop-1.3.0/MachineShop/R/ML_SuperModel.R          |   23 
 MachineShop-1.3.0/MachineShop/R/ML_SurvRegModel.R        |    4 
 MachineShop-1.3.0/MachineShop/R/ML_TreeModel.R           |    4 
 MachineShop-1.3.0/MachineShop/R/ML_XGBModel.R            |   11 
 MachineShop-1.3.0/MachineShop/R/MachineShop-package.R    |   17 
 MachineShop-1.3.0/MachineShop/R/ModelFrame.R             |  295 ++
 MachineShop-1.3.0/MachineShop/R/ModelRecipe.R            |only
 MachineShop-1.3.0/MachineShop/R/append.R                 |   28 
 MachineShop-1.3.0/MachineShop/R/calibration.R            |  159 +
 MachineShop-1.3.0/MachineShop/R/confusion.R              |   49 
 MachineShop-1.3.0/MachineShop/R/convert.R                |   20 
 MachineShop-1.3.0/MachineShop/R/data.R                   |only
 MachineShop-1.3.0/MachineShop/R/dependence.R             |   43 
 MachineShop-1.3.0/MachineShop/R/diff.R                   |   22 
 MachineShop-1.3.0/MachineShop/R/extract.R                |only
 MachineShop-1.3.0/MachineShop/R/fit.R                    |   44 
 MachineShop-1.3.0/MachineShop/R/grid.R                   |   15 
 MachineShop-1.3.0/MachineShop/R/lift.R                   |   21 
 MachineShop-1.3.0/MachineShop/R/metricinfo.R             |    2 
 MachineShop-1.3.0/MachineShop/R/metrics-factor.R         |   56 
 MachineShop-1.3.0/MachineShop/R/metrics-numeric.R        |   48 
 MachineShop-1.3.0/MachineShop/R/modelinfo.R              |    2 
 MachineShop-1.3.0/MachineShop/R/performance.R            |   56 
 MachineShop-1.3.0/MachineShop/R/performance_curve.R      |   69 
 MachineShop-1.3.0/MachineShop/R/plots.R                  |    6 
 MachineShop-1.3.0/MachineShop/R/predict.R                |   27 
 MachineShop-1.3.0/MachineShop/R/predictors.R             |only
 MachineShop-1.3.0/MachineShop/R/resample.R               |  123 -
 MachineShop-1.3.0/MachineShop/R/response.R               |   59 
 MachineShop-1.3.0/MachineShop/R/show.R                   |   85 
 MachineShop-1.3.0/MachineShop/R/summary.R                |    6 
 MachineShop-1.3.0/MachineShop/R/survival.R               |  351 ++
 MachineShop-1.3.0/MachineShop/R/tune.R                   |   47 
 MachineShop-1.3.0/MachineShop/R/utils.R                  |  118 -
 MachineShop-1.3.0/MachineShop/R/varimp.R                 |   38 
 MachineShop-1.3.0/MachineShop/README.md                  |   21 
 MachineShop-1.3.0/MachineShop/data                       |only
 MachineShop-1.3.0/MachineShop/inst/doc/Introduction.R    |   79 
 MachineShop-1.3.0/MachineShop/inst/doc/Introduction.Rmd  |  238 +-
 MachineShop-1.3.0/MachineShop/inst/doc/Introduction.html | 1757 +++++++--------
 MachineShop-1.3.0/MachineShop/inst/doc/MLModels.html     |    4 
 MachineShop-1.3.0/MachineShop/man/BARTMachineModel.Rd    |    4 
 MachineShop-1.3.0/MachineShop/man/BARTModel.Rd           |    4 
 MachineShop-1.3.0/MachineShop/man/CForestModel.Rd        |    4 
 MachineShop-1.3.0/MachineShop/man/CoxModel.Rd            |    2 
 MachineShop-1.3.0/MachineShop/man/GLMModel.Rd            |    4 
 MachineShop-1.3.0/MachineShop/man/GLMNetModel.Rd         |    4 
 MachineShop-1.3.0/MachineShop/man/ICHomes.Rd             |only
 MachineShop-1.3.0/MachineShop/man/LARSModel.Rd           |    4 
 MachineShop-1.3.0/MachineShop/man/LMModel.Rd             |    4 
 MachineShop-1.3.0/MachineShop/man/MLControl.Rd           |   10 
 MachineShop-1.3.0/MachineShop/man/MLMetric.Rd            |    2 
 MachineShop-1.3.0/MachineShop/man/MLModel.Rd             |   11 
 MachineShop-1.3.0/MachineShop/man/MachineShop-package.Rd |   17 
 MachineShop-1.3.0/MachineShop/man/ModelFrame-methods.Rd  |   26 
 MachineShop-1.3.0/MachineShop/man/NNetModel.Rd           |    4 
 MachineShop-1.3.0/MachineShop/man/PLSModel.Rd            |    4 
 MachineShop-1.3.0/MachineShop/man/POLRModel.Rd           |    6 
 MachineShop-1.3.0/MachineShop/man/RandomForestModel.Rd   |    4 
 MachineShop-1.3.0/MachineShop/man/SVMModel.Rd            |    6 
 MachineShop-1.3.0/MachineShop/man/StackedModel.Rd        |    6 
 MachineShop-1.3.0/MachineShop/man/SuperModel.Rd          |    6 
 MachineShop-1.3.0/MachineShop/man/SurvMatrix.Rd          |   15 
 MachineShop-1.3.0/MachineShop/man/XGBModel.Rd            |    2 
 MachineShop-1.3.0/MachineShop/man/calibration.Rd         |   20 
 MachineShop-1.3.0/MachineShop/man/confusion.Rd           |    7 
 MachineShop-1.3.0/MachineShop/man/diff-methods.Rd        |    2 
 MachineShop-1.3.0/MachineShop/man/dot-.Rd                |    7 
 MachineShop-1.3.0/MachineShop/man/extract-methods.Rd     |only
 MachineShop-1.3.0/MachineShop/man/fit-methods.Rd         |   11 
 MachineShop-1.3.0/MachineShop/man/lift.Rd                |    7 
 MachineShop-1.3.0/MachineShop/man/metrics.Rd             |   10 
 MachineShop-1.3.0/MachineShop/man/performance.Rd         |   19 
 MachineShop-1.3.0/MachineShop/man/performance_curve.Rd   |    4 
 MachineShop-1.3.0/MachineShop/man/predict.Rd             |   18 
 MachineShop-1.3.0/MachineShop/man/resample-methods.Rd    |   13 
 MachineShop-1.3.0/MachineShop/man/response-methods.Rd    |   20 
 MachineShop-1.3.0/MachineShop/man/t.test.Rd              |   10 
 MachineShop-1.3.0/MachineShop/man/tune-methods.Rd        |   27 
 MachineShop-1.3.0/MachineShop/tests/testthat/Rplots.pdf  |binary
 MachineShop-1.3.0/MachineShop/vignettes/Introduction.Rmd |  238 +-
 MachineShop-1.3.0/MachineShop/vignettes/bibliography.bib |   71 
 121 files changed, 3399 insertions(+), 2538 deletions(-)

More information about MachineShop at CRAN
Permanent link

Package ggforce updated to version 0.2.2 with previous version 0.2.1 dated 2019-03-12

Title: Accelerating 'ggplot2'
Description: The aim of 'ggplot2' is to aid in visual data investigations. This focus has led to a lack of facilities for composing specialised plots. 'ggforce' aims to be a collection of mainly new stats and geoms that fills this gap. All additional functionality is aimed to come through the official extension system so using 'ggforce' should be a stable experience.
Author: Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>

Diff between ggforce versions 0.2.1 dated 2019-03-12 and 0.2.2 dated 2019-04-23

 DESCRIPTION                |    8 
 MD5                        |    8 
 NEWS.md                    |    7 
 R/sina.R                   |    2 
 inst/doc/Visual_Guide.html |  379 ++++++++++++++++++++++-----------------------
 5 files changed, 205 insertions(+), 199 deletions(-)

More information about ggforce at CRAN
Permanent link

Package stars updated to version 0.3-1 with previous version 0.3-0 dated 2019-02-24

Title: Spatiotemporal Arrays, Raster and Vector Data Cubes
Description: Reading, manipulating, writing and plotting spatiotemporal arrays (raster and vector data cubes) in 'R', using 'GDAL' bindings provided by 'sf', and 'NetCDF' bindings by 'ncmeta' and 'RNetCDF'.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>), Michael Sumner [ctb] (<https://orcid.org/0000-0002-2471-7511>), Etienne Racine [ctb], Adriano Fantini [ctb], David Blodgett [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

Diff between stars versions 0.3-0 dated 2019-02-24 and 0.3-1 dated 2019-04-23

 DESCRIPTION                 |   23 +++---
 MD5                         |  138 ++++++++++++++++++++------------------
 NAMESPACE                   |   10 ++
 NEWS.md                     |    6 +
 R/aggregate.R               |   36 +++++++---
 R/dimensions.R              |  107 +++++++++++++++++------------
 R/geom.R                    |only
 R/init.R                    |    2 
 R/intervals.R               |   21 +++++
 R/ncdf.R                    |  157 ++++++++++++++++++++++++++++++++++++++------
 R/ops.R                     |   34 +++++++--
 R/plot.R                    |   13 ++-
 R/proxy.R                   |   67 +++++++++++++-----
 R/read.R                    |    4 -
 R/sf.R                      |   13 ---
 R/spacetime.R               |   16 ++--
 R/stars.R                   |   87 +++++++++++++++++++-----
 R/subset.R                  |   29 +++++---
 R/tidyverse.R               |   28 +++++--
 R/warp.R                    |    3 
 R/write.R                   |   57 ++++++++++++---
 build/vignette.rds          |binary
 inst/doc/stars1.html        |  115 +++++++++++++++++++++++++-------
 inst/doc/stars2.html        |  142 ++++++++++++++++++++++++++++-----------
 inst/doc/stars3.html        |   86 +++++++++++++++++++++---
 inst/doc/stars4.html        |   67 ++++++++++++++++++
 inst/doc/stars5.R           |    4 -
 inst/doc/stars5.Rmd         |    4 -
 inst/doc/stars5.html        |   70 ++++++++++++++++++-
 inst/docker/trusty          |only
 inst/nc/bcsd_obs_1999.nc    |binary
 inst/nc/reduced.R           |only
 inst/nc/reduced.nc          |binary
 inst/nc/test_stageiv_xyt.nc |binary
 man/aggregate.stars.Rd      |    3 
 man/plot.stars.Rd           |    5 +
 man/read_ncdf.Rd            |   15 ++--
 man/st_apply.Rd             |   10 ++
 man/st_as_sf.Rd             |    2 
 man/st_coordinates.Rd       |   13 ++-
 man/st_crop.Rd              |    5 +
 man/write_stars.Rd          |    4 -
 tests/aggregate.R           |    2 
 tests/aggregate.Rout.save   |   30 ++++----
 tests/area.R                |    2 
 tests/area.Rout.save        |   11 +--
 tests/curvilinear.R         |    2 
 tests/curvilinear.Rout.save |   11 +--
 tests/gridtypes.R           |    4 -
 tests/gridtypes.Rout.save   |   39 ++++------
 tests/nc.Rout.save          |    4 -
 tests/netcdf.R              |    1 
 tests/netcdf.Rout.save      |   41 +++++------
 tests/plot.R                |    2 
 tests/plot.Rout.save        |   11 +--
 tests/predict.R             |only
 tests/predict.Rout.save     |only
 tests/proxy.R               |    1 
 tests/proxy.Rout.save       |   71 ++++++++++---------
 tests/rasterize.R           |    2 
 tests/rasterize.Rout.save   |   13 +--
 tests/redimension.R         |    2 
 tests/redimension.Rout.save |   53 +++++++-------
 tests/sp.R                  |    2 
 tests/sp.Rout.save          |   11 +--
 tests/stars.R               |    2 
 tests/stars.Rout.save       |   47 ++++++++-----
 tests/testthat.R            |    2 
 tests/testthat.Rout.save    |   13 +--
 tests/warp.R                |    5 -
 tests/warp.Rout.save        |   13 +--
 vignettes/contour.png       |only
 vignettes/stars5.Rmd        |    4 -
 73 files changed, 1241 insertions(+), 556 deletions(-)

More information about stars at CRAN
Permanent link

Package fields updated to version 9.7 with previous version 9.6.1 dated 2019-04-22

Title: Tools for Spatial Data
Description: For curve, surface and function fitting with an emphasis on splines, spatial data and spatial statistics. The major methods include cubic, and thin plate splines, Kriging, and compactly supported covariance functions for large data sets. The splines and Kriging methods are supported by functions that can determine the smoothing parameter (nugget and sill variance) and other covariance function parameters by cross validation and also by restricted maximum likelihood. For Kriging there is an easy to use function that also estimates the correlation scale (range parameter). A major feature is that any covariance function implemented in R and following a simple format can be used for spatial prediction. There are also many useful functions for plotting and working with spatial data as images. This package also contains an implementation of sparse matrix methods for large spatial data sets and currently requires the sparse matrix (spam) package. Use help(fields) to get started and for an overview. The fields source code is deliberately commented and provides useful explanations of numerical details as a companion to the manual pages. The commented source code can be viewed by expanding source code version and looking in the R subdirectory. The reference for fields can be generated by the citation function in R and has DOI <doi:10.5065/D6W957CT>. Development of this package was supported in part by the National Science Foundation Grant 1417857 and the National Center for Atmospheric Research. See the Fields URL for a vignette on using this package and some background on spatial statistics.
Author: Douglas Nychka [aut, cre], Reinhard Furrer [aut], John Paige [aut], Stephan Sain [aut]
Maintainer: Douglas Nychka <douglasnychka@gmail.com>

Diff between fields versions 9.6.1 dated 2019-04-22 and 9.7 dated 2019-04-23

 DESCRIPTION                           |   15 +
 MD5                                   |  265 +++++++++++++++++-----------------
 R/Krig.family.R                       |    4 
 R/QSreg.R                             |only
 R/color.scale.R                       |    8 -
 R/fastTps.family.R                    |    6 
 R/fields.style.R                      |    3 
 R/image.family.R                      |    5 
 R/mKrig.R                             |    9 -
 R/print.spatialProcess.R              |   13 +
 R/print.summary.spatialProcess.R      |    4 
 R/printGCVWarnings.R                  |    8 -
 R/profile.R                           |    4 
 inst/CITATION                         |    2 
 man/BD.Rd                             |    2 
 man/CO.Rd                             |    2 
 man/CO2.Rd                            |    2 
 man/CovarianceUpper.Rd                |    2 
 man/Exponential.Rd                    |    2 
 man/FORTRAN.internal.Rd               |    2 
 man/Krig.Amatrix.Rd                   |    2 
 man/Krig.Rd                           |    2 
 man/Krig.engine.default.Rd            |    2 
 man/Krig.null.function.Rd             |    2 
 man/Krig.replicates.Rd                |    5 
 man/MLESpatialProcess.Rd              |    2 
 man/NorthAmericanRainfall.Rd          |    2 
 man/QTps.Rd                           |   34 +++-
 man/RCMexample.Rd                     |    2 
 man/REML.test.Rd                      |    2 
 man/RMprecip.Rd                       |    2 
 man/Tps.Rd                            |   20 +-
 man/US.Rd                             |    2 
 man/US.dat.Rd                         |    2 
 man/Wendland.Rd                       |    2 
 man/WorldBank.Rd                      |    2 
 man/add.image.Rd                      |    2 
 man/arrow.plot.Rd                     |    2 
 man/as.image.Rd                       |    2 
 man/as.surface.Rd                     |    2 
 man/bplot.Rd                          |    2 
 man/bplot.xy.Rd                       |    2 
 man/colorbar.plot.Rd                  |    2 
 man/compactToMat.Rd                   |    2 
 man/cover.design.Rd                   |    2 
 man/drape.plot.Rd                     |    2 
 man/exp.cov.Rd                        |    2 
 man/fields-internal.Rd                |    2 
 man/fields-stuff.Rd                   |    2 
 man/fields.Rd                         |   27 +--
 man/fields.grid.Rd                    |    2 
 man/fields.hints.Rd                   |    2 
 man/fields.tests.Rd                   |    2 
 man/flame.Rd                          |    2 
 man/gcv.Krig.Rd                       |    2 
 man/grid.list.Rd                      |    2 
 man/image.cov.Rd                      |    2 
 man/image.plot.Rd                     |    2 
 man/image.smooth.Rd                   |    2 
 man/image2lz.Rd                       |    2 
 man/interp.surface.Rd                 |    2 
 man/lennon.Rd                         |    2 
 man/mKrig.MLE.Rd                      |    6 
 man/mKrig.Rd                          |    6 
 man/mKrigMLE.Rd                       |    6 
 man/minitri.Rd                        |    2 
 man/ozone.Rd                          |    2 
 man/ozone2.Rd                         |    2 
 man/plot.Krig.Rd                      |    2 
 man/plot.surface.Rd                   |    2 
 man/poly.image.Rd                     |    2 
 man/predict.Krig.Rd                   |    2 
 man/predictSE.Krig.Rd                 |    2 
 man/predictSurface.Rd                 |    2 
 man/print.Krig.Rd                     |    2 
 man/pushpin.Rd                        |    2 
 man/qsreg.Rd                          |    2 
 man/quilt.plot.Rd                     |    2 
 man/rat.diet.Rd                       |    2 
 man/rdist.Rd                          |    2 
 man/rdist.earth.Rd                    |    2 
 man/registeredC.Rd                    |    2 
 man/ribbon.plot.Rd                    |    2 
 man/set.panel.Rd                      |    2 
 man/sim.Krig.Rd                       |    2 
 man/sim.rf.Rd                         |    2 
 man/smooth.2d.Rd                      |    2 
 man/spam2lz.Rd                        |    2 
 man/spatialProcess.Rd                 |    2 
 man/splint.Rd                         |    2 
 man/sreg.Rd                           |    2 
 man/stats.Rd                          |    2 
 man/stats.bin.Rd                      |    2 
 man/summary.Krig.Rd                   |    2 
 man/summary.ncdf.Rd                   |    2 
 man/supportsArg.Rd                    |    2 
 man/surface.Krig.Rd                   |    2 
 man/tim.colors.Rd                     |    4 
 man/transformx.Rd                     |    2 
 man/vgram.Rd                          |    2 
 man/vgram.matrix.Rd                   |    2 
 man/world.Rd                          |    2 
 man/xline.Rd                          |    2 
 man/yline.Rd                          |    2 
 tests/Krig.Z.test.Rout.save           |    8 -
 tests/Krig.se.W.Rout.save             |    8 -
 tests/Krig.se.grid.test.Rout.save     |    8 -
 tests/Krig.se.test.Rout.save          |    8 -
 tests/Krig.test.Rout.save             |    8 -
 tests/Krig.test.W.Rout.save           |    8 -
 tests/KrigGCVREML.test.Rout.save      |    8 -
 tests/Likelihood.test.Rout.save       |    8 -
 tests/REMLest.test.Rout.save          |    8 -
 tests/Tps.test.Rout.save              |    8 -
 tests/Wend.test.Rout.save             |    8 -
 tests/cov.test.Rout.save              |    8 -
 tests/cov.test2.Rout.save             |    8 -
 tests/derivative.test.Rout.save       |    8 -
 tests/diag.multiply.test.Rout.save    |    8 -
 tests/diagonal2.test.Rout.save        |    8 -
 tests/evlpoly.test.Rout.save          |    8 -
 tests/fastTpsPredict.test.Rout.save   |    8 -
 tests/mKrig.MLE.test.Rout.save        |   10 -
 tests/mKrig.Z.Rout.save               |    8 -
 tests/mKrig.parameters.test.Rout.save |    8 -
 tests/mKrig.se.test.Rout.save         |    8 -
 tests/mKrig.test.R                    |    2 
 tests/mKrig.test.Rout.save            |    6 
 tests/mKrigMLETest.Rout.save          |    8 -
 tests/mKrigREMLTest.Rout.save         |    8 -
 tests/misc.test.Rout.save             |    8 -
 tests/spam.test.Rout.save             |    8 -
 tests/sreg.test.Rout.save             |    8 -
 tests/vgram.test.Rout.save            |    8 -
 134 files changed, 453 insertions(+), 399 deletions(-)

More information about fields at CRAN
Permanent link

New package socviz with initial version 1.0.0
Package: socviz
Type: Package
Title: Utility Functions and Data Sets for Data Visualization
Version: 1.0.0
Authors@R: person("Kieran", "Healy", email = "kjhealy@gmail.com", role = c("aut", "cre"))
Maintainer: Kieran Healy <kjhealy@gmail.com>
Description: Supporting materials for a course and book on data visualization. It contains utility functions for graphs and several sample data sets. See Healy (2019) <ISBN 978-0691181622>.
License: MIT + file LICENSE
Depends: R (>= 3.1)
Imports: dplyr, fs, graphics, magrittr, rlang, tibble
Suggests: ggplot2
Encoding: UTF-8
LazyData: true
URL: https://github.com/kjhealy/socviz
BugReports: https://github.com/kjhealy/socviz/issues
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-04-18 15:20:47 UTC; kjhealy
Author: Kieran Healy [aut, cre]
Repository: CRAN
Date/Publication: 2019-04-23 12:00:03 UTC

More information about socviz at CRAN
Permanent link

New package shinybusy with initial version 0.1.1
Package: shinybusy
Title: Busy Indicator for 'Shiny' Applications
Version: 0.1.1
Authors@R: c(person("Fanny", "Meyer", email = "fanny.meyer@dreamrs.fr", role = c("aut")), person("Victor", "Perrier", email = "victor.perrier@dreamrs.fr", role = c("aut", "cre")), person("Silex Technologies", comment = "https://www.silex-ip.com", role = "fnd"), person("Tobias", "Ahlin", role = "cph", comment = "spin.css"), person("Chris", "Antonellis", role = "cph", comment = "freezeframe.js"), person("Jacobo", "Tabernero", role = "cph", comment = "nanobar.js"))
Description: Add a global indicator (spinner, progress bar, gif) in your 'shiny' applications to show the user that the server is busy.
License: GPL-3 | file LICENSE
Encoding: UTF-8
LazyData: true
Imports: htmltools, shiny, jsonlite
RoxygenNote: 6.1.1
URL: https://github.com/dreamRs/shinybusy
BugReports: https://github.com/dreamRs/shinybusy/issues
Suggests: testthat
NeedsCompilation: no
Packaged: 2019-04-17 20:43:14 UTC; perri
Author: Fanny Meyer [aut], Victor Perrier [aut, cre], Silex Technologies [fnd] (https://www.silex-ip.com), Tobias Ahlin [cph] (spin.css), Chris Antonellis [cph] (freezeframe.js), Jacobo Tabernero [cph] (nanobar.js)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Repository: CRAN
Date/Publication: 2019-04-23 11:40:03 UTC

More information about shinybusy at CRAN
Permanent link

New package RobStatTM with initial version 1.0.0
Package: RobStatTM
Version: 1.0.0
Date: 2019-03-03
Title: Robust Statistics: Theory and Methods
Authors@R: c(person("Matias", "Salibian-Barrera", role = c("cre"), email = "matias@stat.ubc.ca"), person("Victor", "Yohai", role = "aut", email = "vyohai@gmail.com"), person("Ricardo", "Maronna", role="aut", email= "rmaronna@retina.ar"), person("Doug", "Martin", role="aut", email="martinrd3d@gmail.com"), person("Gregory", "Brownson", role="aut", email="gregory.brownson@gmail.com", comment="ShinyUI"), person("Kjell", "Konis", role="aut", email="kjellk@gmail.com"), person("Kjell", "Konis", role="cph", email="kjellk@gmail.com", comment="erfi"), person("Christophe", "Croux", role="ctb", email="christophe.croux@edhec.edu", comment="WBYlogreg, BYlogreg"), person("Gentiane", "Haesbroeck", role="ctb", email="G.Haesbroeck@uliege.be", comment="WBYlogreg, BYlogreg"), person("Martin", "Maechler", role="cph", email="maechler@stat.math.ethz.ch", comment="lmrob.fit, lmrob..M..fit, lmrob.S"), person("Manuel", "Koller", role="cph", email="koller.manuel@gmail.com", comment="lmrob.fit, .vcov.avar1, lmrob.S, lmrob.lar"), person("Matias", "Salibian-Barrera", role="aut", email="matias@stat.ubc.ca") )
Description: Companion package for the book: "Robust Statistics: Theory and Methods, second edition", <http://www.wiley.com/go/maronna/robust>. This package contains code that implements the robust estimators discussed in the recent second edition of the book above, as well as the scripts reproducing all the examples in the book.
Depends: R (>= 3.0.2), fit.models
Imports: stats, graphics, utils, methods, DEoptimR, pyinit, rrcov, robustbase, shiny, shinyjs, PerformanceAnalytics, DT, ggplot2, gridExtra, robust, xts
Suggests: knitr
LazyData: yes
License: GPL (>= 3)
RoxygenNote: 6.1.1
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2019-04-23 04:48:58 UTC; Matias
Author: Matias Salibian-Barrera [cre], Victor Yohai [aut], Ricardo Maronna [aut], Doug Martin [aut], Gregory Brownson [aut] (ShinyUI), Kjell Konis [aut], Kjell Konis [cph] (erfi), Christophe Croux [ctb] (WBYlogreg, BYlogreg), Gentiane Haesbroeck [ctb] (WBYlogreg, BYlogreg), Martin Maechler [cph] (lmrob.fit, lmrob..M..fit, lmrob.S), Manuel Koller [cph] (lmrob.fit, .vcov.avar1, lmrob.S, lmrob.lar), Matias Salibian-Barrera [aut]
Maintainer: Matias Salibian-Barrera <matias@stat.ubc.ca>
Repository: CRAN
Date/Publication: 2019-04-23 11:30:06 UTC

More information about RobStatTM at CRAN
Permanent link

Package ecmwfr updated to version 1.2.1 with previous version 1.2.0 dated 2019-04-19

Title: Interface to 'ECMWF' and 'CDS' Data Web Services
Description: Programmatic interface to the European Centre for Medium-Range Weather Forecasts dataset web services (ECMWF; <https://www.ecmwf.int/>) and Copernicus's Climate Data Store (CDS; <https://cds.climate.copernicus.eu>). Allows for easy downloads of weather forecasts and climate reanalysis data in R.
Author: Koen Hufkens [aut, cre] (<https://orcid.org/0000-0002-5070-8109>), Reto Stauffer [ctb] (<https://orcid.org/0000-0002-3798-5507>), Elio Campitelli [ctb] (<https://orcid.org/0000-0002-7742-9230>)
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>

Diff between ecmwfr versions 1.2.0 dated 2019-04-19 and 1.2.1 dated 2019-04-23

 DESCRIPTION                            |    6 +-
 MD5                                    |   30 +++++------
 R/addin.R                              |    9 +++
 R/zzz.R                                |   14 ++++-
 inst/doc/advanced_vignette.R           |   66 +++++++------------------
 inst/doc/advanced_vignette.Rmd         |   28 ----------
 inst/doc/advanced_vignette.html        |   44 +---------------
 inst/doc/cds_vignette.html             |    4 -
 inst/doc/webapi_vignette.R             |   47 ++++-------------
 inst/doc/webapi_vignette.Rmd           |   37 ++------------
 inst/doc/webapi_vignette.html          |   19 ++++---
 tests/testthat/test_cds.R              |   48 +++++++++---------
 tests/testthat/test_ecmwf.r            |   87 +++++++++++++++++++++++++--------
 tests/testthat/test_helper_functions.R |   66 +++++++++++++++++++------
 vignettes/advanced_vignette.Rmd        |   28 ----------
 vignettes/webapi_vignette.Rmd          |   37 ++------------
 16 files changed, 244 insertions(+), 326 deletions(-)

More information about ecmwfr at CRAN
Permanent link

Package AzureAuth updated to version 1.0.2 with previous version 1.0.1 dated 2019-03-22

Title: Authentication Services for Azure Active Directory
Description: Provides Azure Active Directory (AAD) authentication functionality for R users of Microsoft's 'Azure' cloud <https://azure.microsoft.com/>. Use this package to obtain 'OAuth' 2.0 tokens for services including Azure Resource Manager, Azure Storage and others. It supports both AAD v1.0 and v2.0, as well as multiple authentication methods, including device code and resource owner grant. Tokens are cached in a user-specific directory obtained using the 'rappdirs' package. The interface is based on the 'OAuth' framework in the 'httr' package, but customised and streamlined for Azure.
Author: Hong Ooi [aut, cre], httr development team [ctb] (Original OAuth listener code), Scott Holden [ctb] (Advice on AAD authentication), Chris Stone [ctb] (Advice on AAD authentication), Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>

Diff between AzureAuth versions 1.0.1 dated 2019-03-22 and 1.0.2 dated 2019-04-23

 DESCRIPTION            |    6 
 MD5                    |   20 -
 NEWS.md                |    5 
 R/AzureAuth.R          |    8 
 R/token.R              |    2 
 README.md              |    4 
 inst/doc/token.Rmd     |    6 
 inst/doc/token.html    |  584 ++++++++++++++++++++++++++++---------------------
 man/AzureR_dir.Rd      |    2 
 man/get_azure_token.Rd |    2 
 vignettes/token.Rmd    |    6 
 11 files changed, 372 insertions(+), 273 deletions(-)

More information about AzureAuth at CRAN
Permanent link

New package GetBCBData with initial version 0.5
Package: GetBCBData
Type: Package
Title: Imports Datasets from BCB (Central Bank of Brazil) using Its Official API
Version: 0.5
Date: 2019-04-15
Authors@R: person("Marcelo", "Perlin", email = "marceloperlin@gmail.com", role = c("aut", "cre"))
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Description: Downloads and organizes datasets using BCB's API <https://www.bcb.gov.br/>. Offers options for caching with the 'memoise' package and , multicore/multisession with 'furrr' and format of output data (long/wide).
Depends: R (>= 3.3.0)
Imports: stringr,stats, RCurl, lubridate, readr, utils, curl,dplyr, future, furrr, jsonlite, memoise, purrr
License: GPL-2
BugReports: https://github.com/msperlin/GetBCBData/issues
URL: https://github.com/msperlin/GetBCBData/
LazyData: true
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown, testthat, ggplot2, tidyverse
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2019-04-16 13:06:28 UTC; msperlin
Author: Marcelo Perlin [aut, cre]
Repository: CRAN
Date/Publication: 2019-04-23 10:10:29 UTC

More information about GetBCBData at CRAN
Permanent link

New package rIntervalTree with initial version 0.1.0
Package: rIntervalTree
Type: Package
Title: An Interval Tree Tool for Real Numbers
Version: 0.1.0
Authors@R: c(person("Shuye", "Pu", role = c("aut", "cre"), email = "shuye2009@gmail.com"))
Author: Shuye Pu [aut, cre]
Maintainer: Shuye Pu <shuye2009@gmail.com>
Description: This tool can be used to build binary interval trees using real number inputs. The tree supports queries of intervals overlapping a single number or an interval (start, end). Intervals with same bounds but different names are treated as distinct intervals. Insertion of intervals is also allowed. Deletion of intervals is not implemented at this point. See Mark de Berg, Otfried Cheong, Marc van Kreveld, Mark Overmars (2008). Computational Geometry: Algorithms and Applications, for a reference.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Collate: 'Interval.R' 'IntervalTree.R'
Imports: methods
NeedsCompilation: no
Packaged: 2019-04-18 16:34:12 UTC; greenblatt
Repository: CRAN
Date/Publication: 2019-04-23 09:20:03 UTC

More information about rIntervalTree at CRAN
Permanent link

New package polyreg with initial version 0.6.4
Package: polyreg
Title: Polynomial Regression
Version: 0.6.4
Authors@R: c(person("Norm", "Matloff", email = "matloff@cs.ucdavis.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9179-6785")), person("Xi", "Cheng", email = "xicheng0821@gmail.com", role = c("aut")), person("Pete", "Mohanty", email = "pmohanty@stanford.edu", role = c("aut"), comment = c(ORCID = "0000-0001-8531-3345")), person("Bohdan", "Khomtchouk", email = "bohdan@stanford.edu", role = c("aut")), person("Matthew", "Kotila", email = "mrkotila@ucdavis.edu", role = c("aut")), person("Robin", "Yancey", email = "reyancey@ucdavis.edu", role = c("aut")), person("Robert", "Tucker", email = "ratucker@ucdavis.edu", role = c("aut")), person("Allan", "Zhao", email = "awxzhao@ucdavis.edu", role = c("aut")), person("Tiffany", "Jiang", email = "thjiang@ucdavis.edu", role = c("ctb")))
Maintainer: Norm Matloff <matloff@cs.ucdavis.edu>
Description: Automate formation and evaluation of polynomial regression models. Provides support for cross-validating categorical variables. The motivation for this package is described in 'Polynomial Regression As an Alternative to Neural Nets' by Xi Cheng, Bohdan Khomtchouk, Norman Matloff, and Pete Mohanty (<arXiv:1806.06850>).
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Depends:
URL: https://github.com/matloff/polyreg
BugReports: https://github.com/matloff/polyreg/issues
RoxygenNote: 6.0.1
Imports: nnet,dummies, parallel, partools, RSpectra, stats, utils
NeedsCompilation: no
Packaged: 2019-04-16 06:32:12 UTC; mohanty
Author: Norm Matloff [aut, cre] (<https://orcid.org/0000-0001-9179-6785>), Xi Cheng [aut], Pete Mohanty [aut] (<https://orcid.org/0000-0001-8531-3345>), Bohdan Khomtchouk [aut], Matthew Kotila [aut], Robin Yancey [aut], Robert Tucker [aut], Allan Zhao [aut], Tiffany Jiang [ctb]
Repository: CRAN
Date/Publication: 2019-04-23 09:30:03 UTC

More information about polyreg at CRAN
Permanent link

New package nptest with initial version 1.0-0
Package: nptest
Type: Package
Title: Nonparametric Tests
Version: 1.0-0
Date: 2019-04-15
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Depends: parallel
Description: Robust permutation tests for location, correlation, and regression problems, as described in Helwig (2019) <doi:10.1002/wics.1457>. Univariate and multivariate tests are supported. For each problem, exact tests and Monte Carlo approximations are available. Parallel computing is implemented via the 'parallel' package.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2019-04-16 04:44:19 UTC; Nate
Repository: CRAN
Date/Publication: 2019-04-23 09:20:32 UTC

More information about nptest at CRAN
Permanent link

Package Eagle updated to version 1.4.0 with previous version 1.3.0 dated 2019-01-31

Title: Multiple Locus Association Mapping on a Genome-Wide Scale
Description: An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred and outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. For users unfamiliar with R, to perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.
Author: Andrew George [aut, cre], Joshua Bowden [ctb], Ryan Stephenson [ctb], Hyun Kang [ctb], Noah Zaitlen [ctb], Claire Wade [ctb], Andrew Kirby [ctb], David Heckerman [ctb], Mark Daly [ctb], Eleazar Eskin [ctb]
Maintainer: Andrew George <andrew.george@csiro.au>

Diff between Eagle versions 1.3.0 dated 2019-01-31 and 1.4.0 dated 2019-04-23

 DESCRIPTION             |    6 -
 MD5                     |   16 ++--
 R/AM.R                  |   22 +++---
 R/ReadPheno.R           |   22 ++++--
 R/build_design_matrix.R |    2 
 R/form_results.R        |   22 ++++--
 R/summary_am.R          |  165 ++++++++++++++++++++++++++----------------------
 inst/shiny_app/app.R    |    2 
 man/SummaryAM.Rd        |   13 ---
 9 files changed, 153 insertions(+), 117 deletions(-)

More information about Eagle at CRAN
Permanent link

New package cmocean with initial version 0.1-1
Package: cmocean
Encoding: UTF-8
Version: 0.1-1
Title: Beautiful Colour Maps for Oceanography
Authors@R: c(person('Kristen', 'Thyng', email = 'kthyng@gmail.com', role = 'aut'), person('Clark', 'Richards', email = 'clark.richards@gmail.com', role = 'ctb'), person('Ivan', 'Krylov', email = 'krylov.r00t@gmail.com', role = 'cre'))
Maintainer: Ivan Krylov <krylov.r00t@gmail.com>
Imports: grDevices
Depends: R (>= 3.0.0)
Suggests: knitr
LazyData: no
Description: Perceptually uniform palettes for commonly used variables in oceanography as functions taking an integer and producing character vectors of colours. See Thyng, K.M., Greene, C.A., Hetland, R.D., Zimmerle, H.M. and S.F. DiMarco (2016) <doi:10.5670/oceanog.2016.66> for the guidelines adhered to when creating the palettes.
License: MIT + file LICENSE
URL: https://matplotlib.org/cmocean/
BugReports: https://github.com/aitap/cmocean
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-04-16 10:11:16 UTC; aitap
Author: Kristen Thyng [aut], Clark Richards [ctb], Ivan Krylov [cre]
Repository: CRAN
Date/Publication: 2019-04-23 09:50:03 UTC

More information about cmocean at CRAN
Permanent link

Package ptmixed updated to version 0.0.2 with previous version 0.0.1 dated 2019-02-12

Title: Poisson-Tweedie Generalized Linear Mixed Model
Description: Fits Poisson-Tweedie generalized linear mixed model. Likelihood approximation based on adaptive Gauss Hermite quadrature rule.
Author: Mirko Signorelli [aut, cre], Pietro Spitali [aut], Roula Tsonaka [aut]
Maintainer: Mirko Signorelli <m.signorelli@lumc.nl>

Diff between ptmixed versions 0.0.1 dated 2019-02-12 and 0.0.2 dated 2019-04-23

 DESCRIPTION          |    6 +-
 MD5                  |   14 ++---
 R/GHpoints.R         |   11 ++--
 R/loglik.R           |    7 +-
 R/ptmixed.R          |   51 +++++++++---------
 R/starting-values.R  |  139 +++++++++++++++++++++------------------------------
 man/loglik.pt.1re.Rd |    6 --
 man/ptmixed.Rd       |   21 +++----
 8 files changed, 116 insertions(+), 139 deletions(-)

More information about ptmixed at CRAN
Permanent link

New package PROBShiny with initial version 0.1.0
Package: PROBShiny
Type: Package
Title: Interactive Document for Working with Basic Probability
Version: 0.1.0
Author: Kartikeya Bolar
Maintainer: Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>
Description: An interactive document on the topic of basic probability using 'rmarkdown' and 'shiny' packages. Runtime examples are provided in the package function as well as at <https://analyticmodels.shinyapps.io/BayesShiny/>.
License: GPL-2
Encoding: UTF-8
LazyData: TRUE
Depends: R (>= 3.0.3)
Imports: shiny,rmarkdown,LaplacesDemon,shinyMatrix,rpivotTable,epitools
RoxygenNote: 6.1.0
NeedsCompilation: no
Packaged: 2019-04-18 17:10:53 UTC; KARTIKEYA
Repository: CRAN
Date/Publication: 2019-04-23 08:30:03 UTC

More information about PROBShiny at CRAN
Permanent link

Package Unicode updated to version 12.0.0-1 with previous version 11.0.0-1 dated 2018-06-30

Title: Unicode Data and Utilities
Description: Data from Unicode 12.0.0 and related utilities.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

Diff between Unicode versions 11.0.0-1 dated 2018-06-30 and 12.0.0-1 dated 2019-04-23

 DESCRIPTION   |    8 ++++----
 MD5           |    6 +++---
 R/basics.R    |    2 +-
 R/sysdata.rda |binary
 4 files changed, 8 insertions(+), 8 deletions(-)

More information about Unicode at CRAN
Permanent link

Package shar updated to version 0.3.1 with previous version 0.3 dated 2019-03-25

Title: Species-Habitat Associations
Description: Analyse species-habitat associations in R. Therefore, information about the location of the species is needed and about the environmental conditions. To test for significance habitat associations, one of the two components is randomized. Methods are mainly based on Plotkin et al. (2000) <doi:10.1006/jtbi.2000.2158> and Harms et al. (2001) <doi:10.1111/j.1365-2745.2001.00615.x>.
Author: Maximillian H.K. Hesselbarth [aut, cre] (<https://orcid.org/0000-0003-1125-9918>), Marco Sciaini [aut] (<https://orcid.org/0000-0002-3042-5435>)
Maintainer: Maximillian H.K. Hesselbarth <maximilian.hesselbarth@uni-goettingen.de>

Diff between shar versions 0.3 dated 2019-03-25 and 0.3.1 dated 2019-04-23

 shar-0.3.1/shar/DESCRIPTION                                  |    6 
 shar-0.3.1/shar/MD5                                          |   77 +++-----
 shar-0.3.1/shar/NEWS.md                                      |    6 
 shar-0.3.1/shar/R/calculate_energy.R                         |    2 
 shar-0.3.1/shar/R/classify_habitats.R                        |  102 +++++------
 shar-0.3.1/shar/R/estimate_pcf_fast.R                        |    2 
 shar-0.3.1/shar/R/fit_point_process.R                        |    2 
 shar-0.3.1/shar/R/randomize_raster.R                         |    2 
 shar-0.3.1/shar/R/reconstruct_marks.R                        |    2 
 shar-0.3.1/shar/R/reconstruct_pattern.R                      |    2 
 shar-0.3.1/shar/R/results_habitat_association.R              |    4 
 shar-0.3.1/shar/R/translate_raster.R                         |    2 
 shar-0.3.1/shar/build/vignette.rds                           |binary
 shar-0.3.1/shar/inst/doc/get_started.R                       |only
 shar-0.3.1/shar/inst/doc/get_started.Rmd                     |only
 shar-0.3.1/shar/inst/doc/get_started.html                    |only
 shar-0.3.1/shar/man/calculate_energy.Rd                      |    2 
 shar-0.3.1/shar/man/classify_habitats.Rd                     |   10 -
 shar-0.3.1/shar/man/estimate_pcf_fast.Rd                     |    2 
 shar-0.3.1/shar/man/figures/README-plot-random_pattern-1.png |binary
 shar-0.3.1/shar/man/figures/README-plot-random_pattern-2.png |binary
 shar-0.3.1/shar/man/figures/README-plot_habitat-random-1.png |binary
 shar-0.3.1/shar/man/fit_point_process.Rd                     |    2 
 shar-0.3.1/shar/man/randomize_raster.Rd                      |    2 
 shar-0.3.1/shar/man/reconstruct_marks.Rd                     |    2 
 shar-0.3.1/shar/man/reconstruct_pattern.Rd                   |    2 
 shar-0.3.1/shar/man/results_habitat_association.Rd           |    4 
 shar-0.3.1/shar/man/translate_raster.Rd                      |    2 
 shar-0.3.1/shar/src/Makevars                                 |    2 
 shar-0.3.1/shar/src/Makevars.win                             |    2 
 shar-0.3.1/shar/tests/testthat/test-estimate_pcf_fast.R      |    7 
 shar-0.3.1/shar/tests/testthat/test-randomize_raster.R       |   10 -
 shar-0.3.1/shar/tests/testthat/test-translate_raster.R       |    8 
 shar-0.3.1/shar/vignettes/get_started.Rmd                    |only
 shar-0.3/shar/inst/doc/background.R                          |only
 shar-0.3/shar/inst/doc/background.Rmd                        |only
 shar-0.3/shar/inst/doc/background.html                       |only
 shar-0.3/shar/inst/doc/publication_record.Rmd                |only
 shar-0.3/shar/inst/doc/publication_record.html               |only
 shar-0.3/shar/inst/doc/reconstruct_multiple_patterns.R       |only
 shar-0.3/shar/inst/doc/reconstruct_multiple_patterns.Rmd     |only
 shar-0.3/shar/inst/doc/reconstruct_multiple_patterns.html    |only
 shar-0.3/shar/vignettes/background.Rmd                       |only
 shar-0.3/shar/vignettes/gamma_vs_reconstruction.png          |only
 shar-0.3/shar/vignettes/methods_overview.png                 |only
 shar-0.3/shar/vignettes/pattern_reconstruction.gif           |only
 shar-0.3/shar/vignettes/publication_record.Rmd               |only
 shar-0.3/shar/vignettes/random_walk.gif                      |only
 shar-0.3/shar/vignettes/reconstruct_multiple_patterns.Rmd    |only
 49 files changed, 139 insertions(+), 127 deletions(-)

More information about shar at CRAN
Permanent link

Package PythonInR updated to version 0.1-7 with previous version 0.1-6 dated 2018-09-17

Title: Use 'Python' from Within 'R'
Description: Interact with 'Python' <https://www.python.org/> from within 'R'.
Author: Florian Schwendinger [aut, cre], Kimyen Truong [ctb]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>

Diff between PythonInR versions 0.1-6 dated 2018-09-17 and 0.1-7 dated 2019-04-23

 DESCRIPTION                   |    8 ++++----
 MD5                           |   18 +++++++++---------
 R/PyExec.R                    |    3 +--
 R/PythonInR.R                 |    2 +-
 README.md                     |    4 +---
 configure                     |   11 +++--------
 man/pyConnect.Rd              |    2 +-
 man/pyExecfile.Rd             |    3 +--
 src/CastRObjects.c            |    2 +-
 src/Python_Explicit_Linking.h |    3 ++-
 10 files changed, 24 insertions(+), 32 deletions(-)

More information about PythonInR at CRAN
Permanent link

Package ISOcodes updated to version 2019.04.22 with previous version 2019.02.13 dated 2019-02-13

Title: Selected ISO Codes
Description: ISO language, territory, currency, script and character codes. Provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217 currency codes, ISO 15924 script codes, and the ISO 8859 character codes as well as the UN M.49 area codes.
Author: Christian Buchta [aut], Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

Diff between ISOcodes versions 2019.02.13 dated 2019-02-13 and 2019.04.22 dated 2019-04-23

 DESCRIPTION                    |    6 +++---
 MD5                            |   28 ++++++++++++++--------------
 data/ISO_15924.rda             |binary
 data/ISO_3166_1.rda            |binary
 data/ISO_3166_2.rda            |binary
 data/ISO_3166_3.rda            |binary
 data/ISO_4217.rda              |binary
 data/ISO_4217_Historic.rda     |binary
 data/ISO_639_2.rda             |binary
 data/ISO_639_3.rda             |binary
 data/ISO_639_3_Retirements.rda |binary
 data/ISO_639_5.rda             |binary
 data/ISO_8859.rda              |binary
 data/UN_M.49_Countries.rda     |binary
 data/UN_M.49_Regions.rda       |binary
 15 files changed, 17 insertions(+), 17 deletions(-)

More information about ISOcodes at CRAN
Permanent link

Package EML updated to version 2.0.0 with previous version 1.0.3 dated 2017-05-02

Title: Read and Write Ecological Metadata Language Files
Description: Work with Ecological Metadata Language ('EML') files. 'EML' is a widely used metadata standard in the ecological and environmental sciences, described in Jones et al. (2006), <doi:10.1146/annurev.ecolsys.37.091305.110031>.
Author: Carl Boettiger [aut, cre, cph] (<https://orcid.org/0000-0002-1642-628X>), Matthew B. Jones [aut] (<https://orcid.org/0000-0003-0077-4738>), Mitchell Maier [ctb] (<https://orcid.org/0000-0001-6955-0535>), Bryce Mecum [ctb] (<https://orcid.org/0000-0002-0381-3766>), Maëlle Salmon [ctb] (<https://orcid.org/0000-0002-2815-0399>), Jeanette Clark [ctb] (<https://orcid.org/0000-0003-4703-1974>)
Maintainer: Carl Boettiger <cboettig@gmail.com>

Diff between EML versions 1.0.3 dated 2017-05-02 and 2.0.0 dated 2019-04-23

 EML-1.0.3/EML/R/classes-stmml.R                           |only
 EML-1.0.3/EML/R/classes.R                                 |only
 EML-1.0.3/EML/R/coercions.R                               |only
 EML-1.0.3/EML/R/eml_find.R                                |only
 EML-1.0.3/EML/R/eml_view.R                                |only
 EML-1.0.3/EML/R/get_TextType.R                            |only
 EML-1.0.3/EML/R/get_coverage.R                            |only
 EML-1.0.3/EML/R/is_standardUnit.R                         |only
 EML-1.0.3/EML/R/literature_coercions.R                    |only
 EML-1.0.3/EML/R/methods.R                                 |only
 EML-1.0.3/EML/R/s4_to_xml.R                               |only
 EML-1.0.3/EML/R/show_methods.R                            |only
 EML-1.0.3/EML/R/xml_to_s4.R                               |only
 EML-1.0.3/EML/R/zzz.R                                     |only
 EML-1.0.3/EML/inst/doc/metadata-repositories.R            |only
 EML-1.0.3/EML/inst/doc/metadata-repositories.Rmd          |only
 EML-1.0.3/EML/inst/doc/metadata-repositories.html         |only
 EML-1.0.3/EML/inst/doc/parsing-EML.R                      |only
 EML-1.0.3/EML/inst/doc/parsing-EML.Rmd                    |only
 EML-1.0.3/EML/inst/doc/parsing-EML.html                   |only
 EML-1.0.3/EML/inst/notebook                               |only
 EML-1.0.3/EML/inst/templates                              |only
 EML-1.0.3/EML/inst/units                                  |only
 EML-1.0.3/EML/inst/xsd                                    |only
 EML-1.0.3/EML/man/c-methods.Rd                            |only
 EML-1.0.3/EML/man/eml_find.Rd                             |only
 EML-1.0.3/EML/man/eml_locate_schema.Rd                    |only
 EML-1.0.3/EML/man/eml_view.Rd                             |only
 EML-1.0.3/EML/man/get_TextType.Rd                         |only
 EML-1.0.3/EML/man/get_taxonomicCoverage.Rd                |only
 EML-1.0.3/EML/tests/testthat/eml-utf8.xml                 |only
 EML-1.0.3/EML/tests/testthat/example-eml-invalid.xml      |only
 EML-1.0.3/EML/tests/testthat/example-eml-valid.xml        |only
 EML-1.0.3/EML/tests/testthat/test-TextType.R              |only
 EML-1.0.3/EML/tests/testthat/test-attributes.R            |only
 EML-1.0.3/EML/tests/testthat/test-coercions.R             |only
 EML-1.0.3/EML/tests/testthat/test-coverage.R              |only
 EML-1.0.3/EML/tests/testthat/test-eml.R                   |only
 EML-1.0.3/EML/tests/testthat/test-physical.R              |only
 EML-1.0.3/EML/tests/testthat/test-testfiles.R             |only
 EML-1.0.3/EML/tests/testthat/test-validation.R            |only
 EML-1.0.3/EML/tests/testthat/test-view.R                  |only
 EML-1.0.3/EML/vignettes/metadata-repositories.Rmd         |only
 EML-1.0.3/EML/vignettes/parsing-EML.Rmd                   |only
 EML-2.0.0/EML/DESCRIPTION                                 |   75 
 EML-2.0.0/EML/LICENSE                                     |only
 EML-2.0.0/EML/MD5                                         |  306 --
 EML-2.0.0/EML/NAMESPACE                                   |   41 
 EML-2.0.0/EML/NEWS.md                                     |   26 
 EML-2.0.0/EML/R/as_person.R                               |only
 EML-2.0.0/EML/R/eml2.R                                    |only
 EML-2.0.0/EML/R/eml_get.R                                 |   92 
 EML-2.0.0/EML/R/eml_validate.R                            |  113 -
 EML-2.0.0/EML/R/get_attributes.R                          |  365 ---
 EML-2.0.0/EML/R/get_unitList.R                            |   69 
 EML-2.0.0/EML/R/get_unit_id.R                             |only
 EML-2.0.0/EML/R/read_eml.R                                |   33 
 EML-2.0.0/EML/R/set_TextType.R                            |   70 
 EML-2.0.0/EML/R/set_attributes.R                          |  591 +++--
 EML-2.0.0/EML/R/set_coverage.R                            |  349 +--
 EML-2.0.0/EML/R/set_methods.R                             |   46 
 EML-2.0.0/EML/R/set_physical.R                            |  116 -
 EML-2.0.0/EML/R/set_responsibleParty.R                    |only
 EML-2.0.0/EML/R/set_software.R                            |only
 EML-2.0.0/EML/R/set_unitList.R                            |  160 -
 EML-2.0.0/EML/R/shiny_attributes.R                        |only
 EML-2.0.0/EML/R/shiny_attributes_app.R                    |only
 EML-2.0.0/EML/R/sysdata.rda                               |only
 EML-2.0.0/EML/R/template_constructor.R                    |only
 EML-2.0.0/EML/R/write_eml.R                               |   73 
 EML-2.0.0/EML/README.md                                   |  380 ++-
 EML-2.0.0/EML/build/vignette.rds                          |binary
 EML-2.0.0/EML/data                                        |only
 EML-2.0.0/EML/inst/WORDLIST                               |only
 EML-2.0.0/EML/inst/doc/creating-EML.R                     |  141 -
 EML-2.0.0/EML/inst/doc/creating-EML.Rmd                   |  184 -
 EML-2.0.0/EML/inst/doc/creating-EML.html                  |  798 ++++---
 EML-2.0.0/EML/inst/doc/working-with-units.R               |   75 
 EML-2.0.0/EML/inst/doc/working-with-units.Rmd             |  149 -
 EML-2.0.0/EML/inst/doc/working-with-units.html            | 1521 ++------------
 EML-2.0.0/EML/inst/examples/create-full-eml.R             |  193 +
 EML-2.0.0/EML/inst/examples/eml_summary.R                 |    2 
 EML-2.0.0/EML/inst/examples/hf-205.R                      |   16 
 EML-2.0.0/EML/inst/examples/hf205-01-TPexp1.csv           |only
 EML-2.0.0/EML/inst/examples/resolve_references.R          |   15 
 EML-2.0.0/EML/inst/extdata                                |only
 EML-2.0.0/EML/inst/htmlwidgets                            |only
 EML-2.0.0/EML/inst/udunits                                |only
 EML-2.0.0/EML/man/build_factors.Rd                        |only
 EML-2.0.0/EML/man/build_units_table.Rd                    |only
 EML-2.0.0/EML/man/detect_delim.Rd                         |only
 EML-2.0.0/EML/man/eml.Rd                                  |only
 EML-2.0.0/EML/man/eml_get.Rd                              |   36 
 EML-2.0.0/EML/man/eml_validate.Rd                         |   17 
 EML-2.0.0/EML/man/figures                                 |only
 EML-2.0.0/EML/man/get_attributes.Rd                       |   14 
 EML-2.0.0/EML/man/get_numberType.Rd                       |only
 EML-2.0.0/EML/man/get_unitList.Rd                         |   12 
 EML-2.0.0/EML/man/get_unit_id.Rd                          |only
 EML-2.0.0/EML/man/htmlwidgets_attributes.Rd               |only
 EML-2.0.0/EML/man/is_standardUnit.Rd                      |    5 
 EML-2.0.0/EML/man/read_eml.Rd                             |   13 
 EML-2.0.0/EML/man/reexports.Rd                            |only
 EML-2.0.0/EML/man/set_TextType.Rd                         |    2 
 EML-2.0.0/EML/man/set_attributes.Rd                       |   30 
 EML-2.0.0/EML/man/set_coverage.Rd                         |   21 
 EML-2.0.0/EML/man/set_methods.Rd                          |    5 
 EML-2.0.0/EML/man/set_physical.Rd                         |   24 
 EML-2.0.0/EML/man/set_responsibleParty.Rd                 |only
 EML-2.0.0/EML/man/set_software.Rd                         |only
 EML-2.0.0/EML/man/set_taxonomicCoverage.Rd                |   68 
 EML-2.0.0/EML/man/set_unitList.Rd                         |   60 
 EML-2.0.0/EML/man/shiny_attributes.Rd                     |only
 EML-2.0.0/EML/man/table_to_r.Rd                           |only
 EML-2.0.0/EML/man/write_eml.Rd                            |    5 
 EML-2.0.0/EML/tests/spelling.R                            |only
 EML-2.0.0/EML/tests/testthat/test-additional-tests.R      |only
 EML-2.0.0/EML/tests/testthat/test-eml2.R                  |only
 EML-2.0.0/EML/tests/testthat/test-eml_get.R               |   54 
 EML-2.0.0/EML/tests/testthat/test-get_attributes.R        |only
 EML-2.0.0/EML/tests/testthat/test-set_attributes.R        |only
 EML-2.0.0/EML/tests/testthat/test-set_responsibleParty.R  |only
 EML-2.0.0/EML/tests/testthat/test-set_taxonomicCoverage.R |only
 EML-2.0.0/EML/tests/testthat/test-units.R                 |  137 -
 EML-2.0.0/EML/tests/testthat/test_detect_delim.R          |only
 EML-2.0.0/EML/tests/testthat/test_get_unit_id.R           |only
 EML-2.0.0/EML/vignettes/creating-EML.Rmd                  |  184 -
 EML-2.0.0/EML/vignettes/working-with-units.Rmd            |  149 -
 128 files changed, 2871 insertions(+), 3964 deletions(-)

More information about EML at CRAN
Permanent link

Package ed50 updated to version 0.1.1 with previous version 0.1.0 dated 2018-11-28

Title: Estimate ED50 and Its Confidence Interval
Description: Functions of five estimation method for ED50 (50 percent effective dose) are provided, and they are respectively Dixon-Mood method (1948) <doi:10.2307/2280071>, Choi's original turning point method (1990) <doi:10.2307/2531453> and it's modified version given by us, as well as logistic regression and isotonic regression. Besides, the package also supports comparison between two estimation results.
Author: Yongbo Gan, Zhijian Yang, Wei Mei
Maintainer: Yongbo Gan <yongbogan@whu.edu.cn>

Diff between ed50 versions 0.1.0 dated 2018-11-28 and 0.1.1 dated 2019-04-23

 DESCRIPTION         |   10 +++----
 MD5                 |   12 ++++----
 NAMESPACE           |   13 +++++++--
 R/estimate.R        |   20 ++++++++------
 R/generateData.R    |   72 ++++++++++++++++++++++++++++++----------------------
 man/estimate.Rd     |    7 +++--
 man/generateData.Rd |    9 ++++--
 7 files changed, 87 insertions(+), 56 deletions(-)

More information about ed50 at CRAN
Permanent link

Package clustrd updated to version 1.3 with previous version 1.2.2 dated 2018-05-06

Title: Methods for Joint Dimension Reduction and Clustering
Description: A class of methods that combine dimension reduction and clustering of continuous, categorical or mixed-type data. For continuous data, the package contains implementations of factorial K-means (Vichi and Kiers 2001; <DOI:10.1016/S0167-9473(00)00064-5>) and reduced K-means (De Soete and Carroll 1994; <DOI:10.1007/978-3-642-51175-2_24>); both methods that combine principal component analysis with K-means clustering. For categorical data, the package provides MCA K-means (Hwang, Dillon and Takane 2006; <DOI:10.1007/s11336-004-1173-x>), i-FCB (Iodice D'Enza and Palumbo 2013, <DOI:10.1007/s00180-012-0329-x>) and Cluster Correspondence Analysis (van de Velden, Iodice D'Enza and Palumbo 2017; <DOI:10.1007/s11336-016-9514-0>), which combine multiple correspondence analysis with K-means. For mixed-type data, it provides mixed Reduced K-means and mixed Factorial K-means (van de Velden, Iodice D'Enza and Markos 2019; <DOI:10.1002/wics.1456>), which combine PCA for mixed-type data with K-means.
Author: Angelos Markos [aut, cre], Alfonso Iodice D'Enza [aut], Michel van de Velden [ctb]
Maintainer: Angelos Markos <amarkos@gmail.com>

Diff between clustrd versions 1.2.2 dated 2018-05-06 and 1.3 dated 2019-04-23

 clustrd-1.2.2/clustrd/R/multiplot.R        |only
 clustrd-1.3/clustrd/DESCRIPTION            |   13 
 clustrd-1.3/clustrd/MD5                    |   65 +-
 clustrd-1.3/clustrd/NAMESPACE              |   17 
 clustrd-1.3/clustrd/R/EmptyKmeans.r        |    6 
 clustrd-1.3/clustrd/R/MCAk.r               |  189 ++++++-
 clustrd-1.3/clustrd/R/boot_clusmca.R       |only
 clustrd-1.3/clustrd/R/boot_cluspca.R       |only
 clustrd-1.3/clustrd/R/boot_cluspcamix.R    |only
 clustrd-1.3/clustrd/R/clusCA.R             |  148 +++++
 clustrd-1.3/clustrd/R/clusmca.R            |   15 
 clustrd-1.3/clustrd/R/cluspca.R            |  735 ++++++++++++++++++++++-------
 clustrd-1.3/clustrd/R/cluspcamix.R         |only
 clustrd-1.3/clustrd/R/clusval.R            |    2 
 clustrd-1.3/clustrd/R/distEuclidean.R      |only
 clustrd-1.3/clustrd/R/fitted.cluspcamix.R  |only
 clustrd-1.3/clustrd/R/global_bootclus.R    |only
 clustrd-1.3/clustrd/R/iFCB.r               |  118 ++++
 clustrd-1.3/clustrd/R/local_bootclus.R     |only
 clustrd-1.3/clustrd/R/outOfIndependence.r  |    3 
 clustrd-1.3/clustrd/R/plot.clusmca.R       |    8 
 clustrd-1.3/clustrd/R/plot.cluspcamix.R    |only
 clustrd-1.3/clustrd/R/plot.tuneclus.R      |    4 
 clustrd-1.3/clustrd/R/print.cluspcamix.R   |only
 clustrd-1.3/clustrd/R/summary.cluspcamix.R |only
 clustrd-1.3/clustrd/R/tune_clusmca.R       |    2 
 clustrd-1.3/clustrd/R/tune_cluspca.R       |    5 
 clustrd-1.3/clustrd/R/tune_cluspcamix.R    |only
 clustrd-1.3/clustrd/R/tuneclus.R           |    6 
 clustrd-1.3/clustrd/data/bribery.rda       |only
 clustrd-1.3/clustrd/data/diamond.rda       |only
 clustrd-1.3/clustrd/data/hsq.rda           |binary
 clustrd-1.3/clustrd/man/bribery.Rd         |only
 clustrd-1.3/clustrd/man/clusmca.Rd         |   13 
 clustrd-1.3/clustrd/man/cluspca.Rd         |   17 
 clustrd-1.3/clustrd/man/cluspcamix.Rd      |only
 clustrd-1.3/clustrd/man/diamond.Rd         |only
 clustrd-1.3/clustrd/man/global_bootclus.Rd |only
 clustrd-1.3/clustrd/man/hsq.Rd             |   64 +-
 clustrd-1.3/clustrd/man/local_bootclus.Rd  |only
 clustrd-1.3/clustrd/man/plot.clusmca.Rd    |    2 
 clustrd-1.3/clustrd/man/plot.cluspca.Rd    |    2 
 clustrd-1.3/clustrd/man/plot.cluspcamix.Rd |only
 clustrd-1.3/clustrd/man/tuneclus.Rd        |   46 +
 44 files changed, 1140 insertions(+), 340 deletions(-)

More information about clustrd at CRAN
Permanent link

Package lctools updated to version 0.2-7 with previous version 0.2-6 dated 2017-08-04

Title: Local Correlation, Spatial Inequalities, Geographically Weighted Regression and Other Tools
Description: Provides researchers and educators with easy-to-learn user friendly tools for calculating key spatial statistics and to apply simple as well as advanced methods of spatial analysis in real data. These include: Local Pearson and Geographically Weighted Pearson Correlation Coefficients, Spatial Inequality Measures (Gini, Spatial Gini, LQ, Focal LQ), Spatial Autocorrelation (Global and Local Moran's I), several Geographically Weighted Regression techniques and other Spatial Analysis tools (other geographically weighted statistics). This package also contains functions for measuring the significance of each statistic calculated, mainly based on Monte Carlo simulations.
Author: Stamatis Kalogirou [aut, cre]
Maintainer: Stamatis Kalogirou <stamatis@lctools.science>

Diff between lctools versions 0.2-6 dated 2017-08-04 and 0.2-7 dated 2019-04-23

 DESCRIPTION                          |   12 +++----
 MD5                                  |   28 ++++++++---------
 R/gwr.bw.R                           |    2 -
 R/l.moransI.R                        |   57 ++++++++++++++++++++++++++++-------
 R/moransI.v.R                        |    4 +-
 build/vignette.rds                   |binary
 data/GR.Municipalities.RData         |binary
 data/VotesGR.RData                   |binary
 inst/doc/SpatialAutocorrelation.Rmd  |    2 -
 inst/doc/SpatialAutocorrelation.pdf  |binary
 inst/doc/SpatialInequalities.pdf     |binary
 man/GR.Municipalities.Rd             |    2 -
 man/l.moransI.Rd                     |    9 ++++-
 man/lctools-package.Rd               |    4 +-
 vignettes/SpatialAutocorrelation.Rmd |    2 -
 15 files changed, 82 insertions(+), 40 deletions(-)

More information about lctools at CRAN
Permanent link

Package rgeoapi (with last version 1.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-10-30 1.1.0

Permanent link
Package loose.rock (with last version 1.0.9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-08-31 1.0.9

Permanent link
Package RealVAMS updated to version 0.4-3 with previous version 0.4-1 dated 2018-04-20

Title: Multivariate VAM Fitting
Description: Fits a multivariate value-added model (VAM), see Broatch, Green, and Karl (2018) <doi:10.32614/RJ-2018-033> and Broatch and Lohr (2012) <doi:10.3102/1076998610396900>, with normally distributed test scores and a binary outcome indicator. A pseudo-likelihood approach, Wolfinger (1993) <doi:10.1080/00949659308811554>, is used for the estimation of this joint generalized linear mixed model. The inner loop of the pseudo-likelihood routine (estimation of a linear mixed model) occurs in the framework of the EM algorithm presented by Karl, Yang, and Lohr (2013) <DOI:10.1016/j.csda.2012.10.004>. This material is based upon work supported by the National Science Foundation under grants DRL-1336027 and DRL-1336265.
Author: Andrew T. Karl, Jennifer Broatch, and Jennifer Green
Maintainer: Andrew Karl <akarl@asu.edu>

Diff between RealVAMS versions 0.4-1 dated 2018-04-20 and 0.4-3 dated 2019-04-23

 RealVAMS-0.4-1/RealVAMS/NEWS                    |only
 RealVAMS-0.4-3/RealVAMS/DESCRIPTION             |   12 
 RealVAMS-0.4-3/RealVAMS/MD5                     |   22 
 RealVAMS-0.4-3/RealVAMS/NAMESPACE               |    1 
 RealVAMS-0.4-3/RealVAMS/R/REML_Rm.R             |only
 RealVAMS-0.4-3/RealVAMS/R/vp_cp.R               | 3259 ++++++++++++------------
 RealVAMS-0.4-3/RealVAMS/inst                    |only
 RealVAMS-0.4-3/RealVAMS/man/REML_Rm.Rd          |only
 RealVAMS-0.4-3/RealVAMS/man/RealVAMS-package.Rd |    8 
 RealVAMS-0.4-3/RealVAMS/man/RealVAMS.Rd         |    7 
 RealVAMS-0.4-3/RealVAMS/src/Makevars            |   15 
 RealVAMS-0.4-3/RealVAMS/src/Makevars.win        |   17 
 RealVAMS-0.4-3/RealVAMS/src/REML_Rm.cpp         |only
 RealVAMS-0.4-3/RealVAMS/src/init.c              |    4 
 14 files changed, 1733 insertions(+), 1612 deletions(-)

More information about RealVAMS at CRAN
Permanent link

Package mscstts updated to version 0.5.1 with previous version 0.4.0 dated 2018-11-19

Title: R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API
Description: R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API, including voice synthesis. A valid account must be registered at the Microsoft Cognitive Services website <https://www.microsoft.com/cognitive-services/> in order to obtain a (free) API key. Without an API key, this package will not work properly.
Author: John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: John Muschelli <muschellij2@gmail.com>

Diff between mscstts versions 0.4.0 dated 2018-11-19 and 0.5.1 dated 2019-04-23

 mscstts-0.4.0/mscstts/man/create_ssml.Rd             |only
 mscstts-0.4.0/mscstts/man/get_ms_tts_key.Rd          |only
 mscstts-0.4.0/mscstts/man/get_ms_tts_token.Rd        |only
 mscstts-0.4.0/mscstts/man/language_to_ms_name.Rd     |only
 mscstts-0.5.1/mscstts/DESCRIPTION                    |   12 
 mscstts-0.5.1/mscstts/MD5                            |   40 -
 mscstts-0.5.1/mscstts/NAMESPACE                      |   24 
 mscstts-0.5.1/mscstts/NEWS.md                        |   10 
 mscstts-0.5.1/mscstts/R/create_ssml.R                |   44 +
 mscstts-0.5.1/mscstts/R/language_to_ms_name.R        |   15 
 mscstts-0.5.1/mscstts/R/ms_list_voices.R             |only
 mscstts-0.5.1/mscstts/R/ms_locales.R                 |  646 +++++++++++++++++--
 mscstts-0.5.1/mscstts/R/ms_synthesize.R              |  154 +++-
 mscstts-0.5.1/mscstts/R/ms_tts_auth.R                |  101 ++
 mscstts-0.5.1/mscstts/R/show.token.R                 |    8 
 mscstts-0.5.1/mscstts/README.md                      |   22 
 mscstts-0.5.1/mscstts/man/figures                    |only
 mscstts-0.5.1/mscstts/man/ms_create_ssml.Rd          |only
 mscstts-0.5.1/mscstts/man/ms_get_tts_key.Rd          |only
 mscstts-0.5.1/mscstts/man/ms_get_tts_token.Rd        |only
 mscstts-0.5.1/mscstts/man/ms_language_to_ms_name.Rd  |only
 mscstts-0.5.1/mscstts/man/ms_list_voices.Rd          |only
 mscstts-0.5.1/mscstts/man/ms_read_synthesis.Rd       |only
 mscstts-0.5.1/mscstts/man/ms_synthesize.Rd           |   42 -
 mscstts-0.5.1/mscstts/man/print.token.Rd             |    3 
 mscstts-0.5.1/mscstts/tests/testthat/test-api_keys.R |    8 
 mscstts-0.5.1/mscstts/tests/testthat/test-synth.R    |    2 
 27 files changed, 947 insertions(+), 184 deletions(-)

More information about mscstts at CRAN
Permanent link

Package cgam updated to version 1.13 with previous version 1.12 dated 2018-11-08

Title: Constrained Generalized Additive Model
Description: A constrained generalized additive model is fitted by the cgam routine. Given a set of predictors, each of which may have a shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The ShapeSelect routine chooses a subset of predictor variables and describes the component relationships with the response. For each predictor, the user needs only specify a set of possible shape or order restrictions. A model selection method chooses the shapes and orderings of the relationships as well as the variables. The cone information criterion (CIC) is used to select the best combination of variables and shapes. A genetic algorithm may be used when the set of possible models is large. In addition, the cgam routine implements a two-dimensional isotonic regression using warped-plane splines without additivity assumptions. It can also fit a convex or concave regression surface with triangle splines without additivity assumptions. See Mary C. Meyer (2013)<doi:10.1080/10485252.2013.797577> for more details.
Author: Mary C. Meyer and Xiyue Liao
Maintainer: Xiyue Liao <liaoxiyue2011@gmail.com>

Diff between cgam versions 1.12 dated 2018-11-08 and 1.13 dated 2019-04-23

 ChangeLog   |    4 +
 DESCRIPTION |    8 +--
 MD5         |   10 ++--
 R/cgam.R    |  128 +++++++++++++++++++++++++++++++++++++++++-------------------
 R/cgamm.R   |   97 +++++++++++++++++++++++++++++++++++++++------
 man/cgam.Rd |    4 -
 6 files changed, 188 insertions(+), 63 deletions(-)

More information about cgam at CRAN
Permanent link

Mon, 22 Apr 2019

Package testthat updated to version 2.1.0 with previous version 2.0.1 dated 2018-10-13

Title: Unit Testing for R
Description: Software testing is important, but, in part because it is frustrating and boring, many of us avoid it. 'testthat' is a testing framework for R that is easy learn and use, and integrates with your existing 'workflow'.
Author: Hadley Wickham [aut, cre], RStudio [cph, fnd], R Core team [ctb] (Implementation of utils::recover())
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between testthat versions 2.0.1 dated 2018-10-13 and 2.1.0 dated 2019-04-22

 testthat-2.0.1/testthat/tests/testthat/test-comparisons.R            |only
 testthat-2.1.0/testthat/DESCRIPTION                                  |   47 -
 testthat-2.1.0/testthat/MD5                                          |  331 +++++-----
 testthat-2.1.0/testthat/NAMESPACE                                    |   13 
 testthat-2.1.0/testthat/NEWS.md                                      |  135 +++-
 testthat-2.1.0/testthat/R/auto-test.R                                |   10 
 testthat-2.1.0/testthat/R/capture-output.R                           |    4 
 testthat-2.1.0/testthat/R/compare.R                                  |    4 
 testthat-2.1.0/testthat/R/context.R                                  |    5 
 testthat-2.1.0/testthat/R/example.R                                  |only
 testthat-2.1.0/testthat/R/expect-comparison.R                        |   28 
 testthat-2.1.0/testthat/R/expect-equality.R                          |   93 --
 testthat-2.1.0/testthat/R/expect-inheritance.R                       |  118 +--
 testthat-2.1.0/testthat/R/expect-invisible.R                         |only
 testthat-2.1.0/testthat/R/expect-known.R                             |   14 
 testthat-2.1.0/testthat/R/expect-length.R                            |    2 
 testthat-2.1.0/testthat/R/expect-logical.R                           |    4 
 testthat-2.1.0/testthat/R/expect-named.R                             |    2 
 testthat-2.1.0/testthat/R/expect-null.R                              |only
 testthat-2.1.0/testthat/R/expect-output.R                            |   75 +-
 testthat-2.1.0/testthat/R/expect-self-test.R                         |    4 
 testthat-2.1.0/testthat/R/expect-setequal.R                          |only
 testthat-2.1.0/testthat/R/expect-that.R                              |   12 
 testthat-2.1.0/testthat/R/expect-vector.R                            |only
 testthat-2.1.0/testthat/R/expectation.R                              |  214 +-----
 testthat-2.1.0/testthat/R/expectations-matches.R                     |   10 
 testthat-2.1.0/testthat/R/mock.R                                     |   79 +-
 testthat-2.1.0/testthat/R/old-school.R                               |   20 
 testthat-2.1.0/testthat/R/praise.R                                   |    4 
 testthat-2.1.0/testthat/R/quasi-label.R                              |only
 testthat-2.1.0/testthat/R/reporter-check.R                           |    6 
 testthat-2.1.0/testthat/R/reporter-junit.R                           |   18 
 testthat-2.1.0/testthat/R/reporter-list.R                            |   11 
 testthat-2.1.0/testthat/R/reporter-multi.R                           |    6 
 testthat-2.1.0/testthat/R/reporter-progress.R                        |   51 +
 testthat-2.1.0/testthat/R/reporter-zzz.R                             |   29 
 testthat-2.1.0/testthat/R/reporter.R                                 |   45 -
 testthat-2.1.0/testthat/R/skip.R                                     |   28 
 testthat-2.1.0/testthat/R/source.R                                   |   19 
 testthat-2.1.0/testthat/R/test-compiled-code.R                       |    2 
 testthat-2.1.0/testthat/R/test-directory.R                           |   32 
 testthat-2.1.0/testthat/R/test-files.R                               |   42 -
 testthat-2.1.0/testthat/R/test-that.R                                |    4 
 testthat-2.1.0/testthat/R/utils.R                                    |   12 
 testthat-2.1.0/testthat/README.md                                    |   75 +-
 testthat-2.1.0/testthat/build/vignette.rds                           |binary
 testthat-2.1.0/testthat/inst/doc/custom-expectation.R                |   16 
 testthat-2.1.0/testthat/inst/doc/custom-expectation.Rmd              |   23 
 testthat-2.1.0/testthat/inst/doc/custom-expectation.html             |   66 +
 testthat-2.1.0/testthat/inst/examples                                |only
 testthat-2.1.0/testthat/inst/include/testthat/testthat.h             |   10 
 testthat-2.1.0/testthat/inst/include/testthat/vendor/catch.h         |    2 
 testthat-2.1.0/testthat/man/CheckReporter.Rd                         |    3 
 testthat-2.1.0/testthat/man/DebugReporter.Rd                         |    3 
 testthat-2.1.0/testthat/man/FailReporter.Rd                          |    3 
 testthat-2.1.0/testthat/man/ListReporter.Rd                          |    3 
 testthat-2.1.0/testthat/man/LocationReporter.Rd                      |    3 
 testthat-2.1.0/testthat/man/MinimalReporter.Rd                       |    3 
 testthat-2.1.0/testthat/man/MultiReporter.Rd                         |    3 
 testthat-2.1.0/testthat/man/ProgressReporter.Rd                      |    3 
 testthat-2.1.0/testthat/man/Reporter.Rd                              |   40 +
 testthat-2.1.0/testthat/man/RstudioReporter.Rd                       |    3 
 testthat-2.1.0/testthat/man/SilentReporter.Rd                        |    3 
 testthat-2.1.0/testthat/man/StopReporter.Rd                          |    3 
 testthat-2.1.0/testthat/man/SummaryReporter.Rd                       |    3 
 testthat-2.1.0/testthat/man/TapReporter.Rd                           |    3 
 testthat-2.1.0/testthat/man/TeamcityReporter.Rd                      |    3 
 testthat-2.1.0/testthat/man/auto_test_package.Rd                     |    3 
 testthat-2.1.0/testthat/man/capture_output.Rd                        |    4 
 testthat-2.1.0/testthat/man/comparison-expectations.Rd               |   17 
 testthat-2.1.0/testthat/man/context.Rd                               |    6 
 testthat-2.1.0/testthat/man/default_reporter.Rd                      |    8 
 testthat-2.1.0/testthat/man/equality-expectations.Rd                 |   48 -
 testthat-2.1.0/testthat/man/expect.Rd                                |   21 
 testthat-2.1.0/testthat/man/expect_invisible.Rd                      |only
 testthat-2.1.0/testthat/man/expect_is.Rd                             |only
 testthat-2.1.0/testthat/man/expect_known_output.Rd                   |   30 
 testthat-2.1.0/testthat/man/expect_length.Rd                         |    7 
 testthat-2.1.0/testthat/man/expect_match.Rd                          |   22 
 testthat-2.1.0/testthat/man/expect_named.Rd                          |   18 
 testthat-2.1.0/testthat/man/expect_null.Rd                           |only
 testthat-2.1.0/testthat/man/expect_setequal.Rd                       |only
 testthat-2.1.0/testthat/man/expect_success.Rd                        |    2 
 testthat-2.1.0/testthat/man/expect_that.Rd                           |   12 
 testthat-2.1.0/testthat/man/expect_vector.Rd                         |only
 testthat-2.1.0/testthat/man/expectation.Rd                           |   11 
 testthat-2.1.0/testthat/man/inheritance-expectations.Rd              |   68 --
 testthat-2.1.0/testthat/man/logical-expectations.Rd                  |   15 
 testthat-2.1.0/testthat/man/output-expectations.Rd                   |   28 
 testthat-2.1.0/testthat/man/quasi_label.Rd                           |   14 
 testthat-2.1.0/testthat/man/reporter-accessors.Rd                    |   26 
 testthat-2.1.0/testthat/man/skip.Rd                                  |   14 
 testthat-2.1.0/testthat/man/source_file.Rd                           |   36 -
 testthat-2.1.0/testthat/man/test_dir.Rd                              |   37 -
 testthat-2.1.0/testthat/man/test_file.Rd                             |   41 -
 testthat-2.1.0/testthat/man/testthat_examples.Rd                     |only
 testthat-2.1.0/testthat/man/with_mock.Rd                             |   19 
 testthat-2.1.0/testthat/src/test-catch.cpp                           |    4 
 testthat-2.1.0/testthat/tests/test-catch.R                           |   12 
 testthat-2.1.0/testthat/tests/testthat/helper-junitmock.R            |   31 
 testthat-2.1.0/testthat/tests/testthat/reporters/check.txt           |   80 +-
 testthat-2.1.0/testthat/tests/testthat/reporters/debug.txt           |   94 +-
 testthat-2.1.0/testthat/tests/testthat/reporters/junit.txt           |   69 +-
 testthat-2.1.0/testthat/tests/testthat/reporters/location.txt        |   38 -
 testthat-2.1.0/testthat/tests/testthat/reporters/minimal.txt         |    2 
 testthat-2.1.0/testthat/tests/testthat/reporters/progress.txt        |  152 ++--
 testthat-2.1.0/testthat/tests/testthat/reporters/rstudio.txt         |   26 
 testthat-2.1.0/testthat/tests/testthat/reporters/summary-2.txt       |   20 
 testthat-2.1.0/testthat/tests/testthat/reporters/summary-no-dots.txt |   78 +-
 testthat-2.1.0/testthat/tests/testthat/reporters/summary.txt         |   80 +-
 testthat-2.1.0/testthat/tests/testthat/reporters/tap.txt             |   83 +-
 testthat-2.1.0/testthat/tests/testthat/reporters/teamcity.txt        |   19 
 testthat-2.1.0/testthat/tests/testthat/reporters/tests.R             |    7 
 testthat-2.1.0/testthat/tests/testthat/test-bare.R                   |    2 
 testthat-2.1.0/testthat/tests/testthat/test-catch.R                  |    2 
 testthat-2.1.0/testthat/tests/testthat/test-colour.R                 |    2 
 testthat-2.1.0/testthat/tests/testthat/test-compare-character.R      |    2 
 testthat-2.1.0/testthat/tests/testthat/test-compare-numeric.R        |    2 
 testthat-2.1.0/testthat/tests/testthat/test-compare-time.R           |    2 
 testthat-2.1.0/testthat/tests/testthat/test-compare.R                |   18 
 testthat-2.1.0/testthat/tests/testthat/test-context.R                |    2 
 testthat-2.1.0/testthat/tests/testthat/test-cpp.R                    |    1 
 testthat-2.1.0/testthat/tests/testthat/test-debug-reporter.R         |    2 
 testthat-2.1.0/testthat/tests/testthat/test-describe.R               |    4 
 testthat-2.1.0/testthat/tests/testthat/test-environment.R            |    2 
 testthat-2.1.0/testthat/tests/testthat/test-error/test-error.R       |    2 
 testthat-2.1.0/testthat/tests/testthat/test-evaluate-promise.R       |    3 
 testthat-2.1.0/testthat/tests/testthat/test-examples.R               |    6 
 testthat-2.1.0/testthat/tests/testthat/test-expect-comparison.R      |only
 testthat-2.1.0/testthat/tests/testthat/test-expect-equality.R        |   14 
 testthat-2.1.0/testthat/tests/testthat/test-expect-error.R           |    9 
 testthat-2.1.0/testthat/tests/testthat/test-expect-error.txt         |   10 
 testthat-2.1.0/testthat/tests/testthat/test-expect-inheritance.R     |    7 
 testthat-2.1.0/testthat/tests/testthat/test-expect-invisible.R       |only
 testthat-2.1.0/testthat/tests/testthat/test-expect-known-hash.R      |    2 
 testthat-2.1.0/testthat/tests/testthat/test-expect-known-output.R    |    2 
 testthat-2.1.0/testthat/tests/testthat/test-expect-known-value.R     |   20 
 testthat-2.1.0/testthat/tests/testthat/test-expect-length.R          |    2 
 testthat-2.1.0/testthat/tests/testthat/test-expect-logical.R         |    2 
 testthat-2.1.0/testthat/tests/testthat/test-expect-match.R           |   19 
 testthat-2.1.0/testthat/tests/testthat/test-expect-message.R         |    2 
 testthat-2.1.0/testthat/tests/testthat/test-expect-named.R           |    2 
 testthat-2.1.0/testthat/tests/testthat/test-expect-null.R            |    2 
 testthat-2.1.0/testthat/tests/testthat/test-expect-output.R          |   18 
 testthat-2.1.0/testthat/tests/testthat/test-expect-reference.R       |    2 
 testthat-2.1.0/testthat/tests/testthat/test-expect-self-test.R       |   23 
 testthat-2.1.0/testthat/tests/testthat/test-expect-setequal.R        |only
 testthat-2.1.0/testthat/tests/testthat/test-expect-silent.R          |    2 
 testthat-2.1.0/testthat/tests/testthat/test-expect-vector.R          |only
 testthat-2.1.0/testthat/tests/testthat/test-expect-warning.R         |    2 
 testthat-2.1.0/testthat/tests/testthat/test-expect-warning.txt       |    8 
 testthat-2.1.0/testthat/tests/testthat/test-expect_that.R            |    2 
 testthat-2.1.0/testthat/tests/testthat/test-expectation.R            |only
 testthat-2.1.0/testthat/tests/testthat/test-helpers.R                |    2 
 testthat-2.1.0/testthat/tests/testthat/test-label.R                  |    2 
 testthat-2.1.0/testthat/tests/testthat/test-make-expectation.R       |only
 testthat-2.1.0/testthat/tests/testthat/test-mock.R                   |   15 
 testthat-2.1.0/testthat/tests/testthat/test-old-school.R             |   11 
 testthat-2.1.0/testthat/tests/testthat/test-reporter-junit.R         |only
 testthat-2.1.0/testthat/tests/testthat/test-reporter-list.R          |    2 
 testthat-2.1.0/testthat/tests/testthat/test-reporter-multi.R         |    2 
 testthat-2.1.0/testthat/tests/testthat/test-reporter-zzz.R           |only
 testthat-2.1.0/testthat/tests/testthat/test-reporter.R               |  166 +----
 testthat-2.1.0/testthat/tests/testthat/test-skip.R                   |   59 +
 testthat-2.1.0/testthat/tests/testthat/test-source.R                 |    2 
 testthat-2.1.0/testthat/tests/testthat/test-source_dir.R             |    2 
 testthat-2.1.0/testthat/tests/testthat/test-teardown-1.R             |    2 
 testthat-2.1.0/testthat/tests/testthat/test-teardown-2.R             |    2 
 testthat-2.1.0/testthat/tests/testthat/test-test-path.R              |    2 
 testthat-2.1.0/testthat/tests/testthat/test-test-that.R              |    2 
 testthat-2.1.0/testthat/tests/testthat/test-test_dir.R               |    9 
 testthat-2.1.0/testthat/tests/testthat/test-try-again.R              |    2 
 testthat-2.1.0/testthat/tests/testthat/test-warning/test-warning.R   |    2 
 testthat-2.1.0/testthat/tests/testthat/test-watcher.R                |    6 
 testthat-2.1.0/testthat/tests/testthat/test_dir.rds                  |binary
 testthat-2.1.0/testthat/tests/testthat/utf8.R                        |    2 
 testthat-2.1.0/testthat/vignettes/custom-expectation.Rmd             |   23 
 177 files changed, 2136 insertions(+), 1490 deletions(-)

More information about testthat at CRAN
Permanent link

Package rcdd updated to version 1.2-2 with previous version 1.2 dated 2017-06-12

Title: Computational Geometry
Description: R interface to (some of) cddlib (<http://www.ifor.math.ethz.ch/~fukuda/cdd_home/cdd.html>). Converts back and forth between two representations of a convex polytope: as solution of a set of linear equalities and inequalities and as convex hull of set of points and rays. Also does linear programming and redundant generator elimination (for example, convex hull in n dimensions). All functions can use exact infinite-precision rational arithmetic.
Author: Charles J. Geyer <charlie@stat.umn.edu> and Glen D. Meeden <glen@stat.umn.edu>, incorporates code from cddlib (ver 0.94f) written by Komei Fukuda <fukuda@ifor.math.ethz.ch>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>

Diff between rcdd versions 1.2 dated 2017-06-12 and 1.2-2 dated 2019-04-22

 CHANGES               |    6 ++++++
 DESCRIPTION           |    8 ++++----
 MD5                   |   30 +++++++++++++++---------------
 build/vignette.rds    |binary
 inst/doc/vinny.pdf    |binary
 man/validcdd.Rd       |    2 +-
 src/cddlp.c           |   12 +++++++-----
 src/cddlp_f.c         |   10 ++++++----
 src/redund.c          |    2 +-
 src/redund_f.c        |    2 +-
 src/scdd.c            |    2 +-
 src/scdd_f.c          |    2 +-
 src/setoper.c         |   23 +++++++++++++++++++----
 tests/arith.Rout.save |    7 +++----
 tests/lpcdd.R         |    4 ++++
 tests/lpcdd.Rout.save |   10 +++++++---
 16 files changed, 76 insertions(+), 44 deletions(-)

More information about rcdd at CRAN
Permanent link

Package oak updated to version 0.2.3 with previous version 0.2.1 dated 2018-11-06

Title: Trees Creation and Manipulation
Description: Functions and classes to create and manipulate trees and nodes.
Author: Paul Poncet [aut, cre]
Maintainer: Paul Poncet <paulponcet@yahoo.fr>

Diff between oak versions 0.2.1 dated 2018-11-06 and 0.2.3 dated 2019-04-22

 DESCRIPTION      |   10 +++++-----
 MD5              |   30 +++++++++++++++---------------
 NAMESPACE        |    8 ++++----
 NEWS.md          |    5 ++++-
 R/ancestors.R    |    2 +-
 R/flatten.R      |    2 +-
 R/leaves.R       |    2 +-
 R/parent.R       |    4 ++--
 R/reexports.R    |    8 ++++----
 R/siblings.R     |    2 +-
 R/take.R         |    6 +++---
 R/tree.R         |   23 +++++++++++++++++++++--
 R/tree_apply.R   |    6 +++---
 README.md        |    3 +--
 man/reexports.Rd |    3 ---
 man/rtree.Rd     |   10 ++++++++--
 16 files changed, 74 insertions(+), 50 deletions(-)

More information about oak at CRAN
Permanent link

Package tidyquant updated to version 0.5.6 with previous version 0.5.5 dated 2018-05-09

Title: Tidy Quantitative Financial Analysis
Description: Bringing financial analysis to the 'tidyverse'. The 'tidyquant' package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR' and 'PerformanceAnalytics' package functions and returns the objects in the tidy 'tibble' format. The main advantage is being able to use quantitative functions with the 'tidyverse' functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See the 'tidyquant' website for more information, documentation and examples.
Author: Matt Dancho [aut, cre], Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>

Diff between tidyquant versions 0.5.5 dated 2018-05-09 and 0.5.6 dated 2019-04-22

 DESCRIPTION                                            |   12 
 MD5                                                    |   46 -
 NEWS.md                                                |    6 
 R/tq_get.R                                             |  576 ++++++++---------
 R/tq_stock_list.R                                      |   14 
 build/vignette.rds                                     |binary
 inst/doc/TQ00-introduction-to-tidyquant.html           |   11 
 inst/doc/TQ01-core-functions-in-tidyquant.R            |   30 
 inst/doc/TQ01-core-functions-in-tidyquant.Rmd          |   33 
 inst/doc/TQ01-core-functions-in-tidyquant.html         |  429 ++++++------
 inst/doc/TQ02-quant-integrations-in-tidyquant.html     |   75 +-
 inst/doc/TQ03-scaling-and-modeling-with-tidyquant.html |  241 +++----
 inst/doc/TQ04-charting-with-tidyquant.html             |   71 +-
 inst/doc/TQ05-performance-analysis-with-tidyquant.html |  223 +++---
 man/deprecated.Rd                                      |    3 
 man/geom_bbands.Rd                                     |   14 
 man/geom_ma.Rd                                         |    5 
 man/quandl_api_key.Rd                                  |    1 
 man/quandl_search.Rd                                   |    1 
 man/theme_tq.Rd                                        |    1 
 man/tq_get.Rd                                          |    4 
 man/tq_mutate.Rd                                       |    1 
 tests/testthat/test_tq_get_key_ratios.R                |   70 +-
 vignettes/TQ01-core-functions-in-tidyquant.Rmd         |   33 
 24 files changed, 1003 insertions(+), 897 deletions(-)

More information about tidyquant at CRAN
Permanent link

New package MLRShiny with initial version 0.1.0
Package: MLRShiny
Type: Package
Title: Interactive Application for Working with Multiple Linear Regression
Version: 0.1.0
Author: Kartikeya Bolar
Maintainer: Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>
Description: An interactive application for working with multiple linear regression technique. The application has a template for solving problems on multiple linear regression. Runtime examples are provided in the package function as well as at <https://kartikeyastat.shinyapps.io/MLR_WEB_K/>.
License: GPL-2
Encoding: UTF-8
LazyData: TRUE
Depends: R (>= 3.0.3)
Imports: shiny,shinyAce,dplyr,psych,QuantPsyc,forecast,corrgram
RoxygenNote: 6.1.0
NeedsCompilation: no
Packaged: 2019-04-11 05:30:07 UTC; KARTIKEYA
Repository: CRAN
Date/Publication: 2019-04-22 19:20:03 UTC

More information about MLRShiny at CRAN
Permanent link

Package SamplingStrata updated to version 1.4-1 with previous version 1.4 dated 2019-01-02

Title: Optimal Stratification of Sampling Frames for Multipurpose Sampling Surveys
Description: In the field of stratified sampling design, this package offers an approach for the determination of the best stratification of a sampling frame, the one that ensures the minimum sample cost under the condition to satisfy precision constraints in a multivariate and multidomain case. This approach is based on the use of the genetic algorithm: each solution (i.e. a particular partition in strata of the sampling frame) is considered as an individual in a population; the fitness of all individuals is evaluated applying the Bethel-Chromy algorithm to calculate the sampling size satisfying precision constraints on the target estimates. Functions in the package allows to: (a) analyse the obtained results of the optimisation step; (b) assign the new strata labels to the sampling frame; (c) select a sample from the new frame accordingly to the best allocation. Functions for the execution of the genetic algorithm are a modified version of the functions in the 'genalg' package.
Author: Giulio Barcaroli, Marco Ballin, Hanjo Odendaal, Daniela Pagliuca, Egon Willighagen, Diego Zardetto
Maintainer: Giulio Barcaroli <gbarcaroli@gmail.com>

Diff between SamplingStrata versions 1.4 dated 2019-01-02 and 1.4-1 dated 2019-04-22

 DESCRIPTION                     |   31 
 MD5                             |   89 -
 NAMESPACE                       |    2 
 NEWS                            |   11 
 R/assignStrataLabel.R           |only
 R/buildStrataDF.R               |only
 R/buildStrataDF_opt2.R          |   18 
 R/optimizeStrata2.R             |    4 
 R/strataGenalg2.R               |    4 
 R/summaryStrata2.R              |only
 build/vignette.rds              |binary
 inst/doc/SamplingStrata.R       |   10 
 inst/doc/SamplingStrata.Rmd     |   23 
 inst/doc/SamplingStrata.bib     |only
 inst/doc/SamplingStrata.html    | 2984 ++++++++++++++++++----------------------
 man/assignStrataLabel.Rd        |only
 man/figures                     |only
 man/optimizeStrata2.Rd          |    2 
 man/summaryStrata.Rd            |only
 vignettes/SamplingStrata.Rmd    |   23 
 vignettes/output/outstrata.txt  |  118 -
 vignettes/output/outstrata1.txt |   17 
 vignettes/output/outstrata2.txt |   31 
 vignettes/output/outstrata3.txt |   13 
 vignettes/output/outstrata4.txt |    7 
 vignettes/output/outstrata5.txt |   24 
 vignettes/output/outstrata6.txt |   10 
 vignettes/output/outstrata7.txt |   16 
 vignettes/output/plotdom1.png   |binary
 vignettes/output/plotdom2.png   |binary
 vignettes/output/plotdom3.png   |binary
 vignettes/output/plotdom4.png   |binary
 vignettes/output/plotdom5.png   |binary
 vignettes/output/plotdom6.png   |binary
 vignettes/output/plotdom7.png   |binary
 vignettes/output/results1.txt   |   10 
 vignettes/output/results2.txt   |   10 
 vignettes/output/results3.txt   |   10 
 vignettes/output/results4.txt   |   10 
 vignettes/output/results5.txt   |   10 
 vignettes/output/results6.txt   |   10 
 vignettes/output/results7.txt   |   10 
 vignettes/output/solution1.txt  |  106 -
 vignettes/output/solution2.txt  |   88 -
 vignettes/output/solution3.txt  |   56 
 vignettes/output/solution4.txt  |   42 
 vignettes/output/solution5.txt  |   74 
 vignettes/output/solution6.txt  |   62 
 vignettes/output/solution7.txt  |   34 
 49 files changed, 1903 insertions(+), 2066 deletions(-)

More information about SamplingStrata at CRAN
Permanent link

Package randomForestSRC updated to version 2.9.0 with previous version 2.8.0 dated 2019-01-02

Title: Fast Unified Random Forests for Survival, Regression, and Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for survival, competing risks, regression and classification based on Ishwaran and Kogalur's popular random survival forests (RSF) package. Handles missing data and now includes multivariate, unsupervised forests, quantile regression and solutions for class imbalanced data. New fast interface using subsampling and confidence regions for variable importance.
Author: Hemant Ishwaran <hemant.ishwaran@gmail.com>, Udaya B. Kogalur <ubk@kogalur.com>
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>

Diff between randomForestSRC versions 2.8.0 dated 2019-01-02 and 2.9.0 dated 2019-04-22

 randomForestSRC-2.8.0/randomForestSRC/R/cindex.R                       |only
 randomForestSRC-2.8.0/randomForestSRC/R/holdoutvimp.rfsrc.R            |only
 randomForestSRC-2.8.0/randomForestSRC/R/quantileReg.rfsrc.R            |only
 randomForestSRC-2.8.0/randomForestSRC/R/rfsrcFast.rfsrc.R              |only
 randomForestSRC-2.8.0/randomForestSRC/R/rfsrcSyn.rfsrc.R               |only
 randomForestSRC-2.8.0/randomForestSRC/man/holdoutvimp.rfsrc.Rd         |only
 randomForestSRC-2.8.0/randomForestSRC/man/quantileReg.rfsrc.Rd         |only
 randomForestSRC-2.8.0/randomForestSRC/man/rfsrcFast.Rd                 |only
 randomForestSRC-2.8.0/randomForestSRC/man/rfsrcSyn.Rd                  |only
 randomForestSRC-2.9.0/randomForestSRC/DESCRIPTION                      |   18 
 randomForestSRC-2.9.0/randomForestSRC/MD5                              |  132 
 randomForestSRC-2.9.0/randomForestSRC/NAMESPACE                        |   61 
 randomForestSRC-2.9.0/randomForestSRC/R/data.utilities.R               |  619 
 randomForestSRC-2.9.0/randomForestSRC/R/generic.impute.rfsrc.R         |    2 
 randomForestSRC-2.9.0/randomForestSRC/R/generic.predict.rfsrc.R        |   60 
 randomForestSRC-2.9.0/randomForestSRC/R/holdout.vimp.rfsrc.R           |only
 randomForestSRC-2.9.0/randomForestSRC/R/imbalanced.rfsrc.R             |   31 
 randomForestSRC-2.9.0/randomForestSRC/R/partial.rfsrc.R                |   39 
 randomForestSRC-2.9.0/randomForestSRC/R/plot.competing.risk.rfsrc.R    |   21 
 randomForestSRC-2.9.0/randomForestSRC/R/plot.quantreg.rfsrc.R          |only
 randomForestSRC-2.9.0/randomForestSRC/R/plot.subsample.rfsrc.R         |   46 
 randomForestSRC-2.9.0/randomForestSRC/R/plot.survival.rfsrc.R          |  422 
 randomForestSRC-2.9.0/randomForestSRC/R/plot.variable.rfsrc.R          |  156 
 randomForestSRC-2.9.0/randomForestSRC/R/predict.rfsrc.R                |    4 
 randomForestSRC-2.9.0/randomForestSRC/R/print.rfsrc.R                  |   28 
 randomForestSRC-2.9.0/randomForestSRC/R/quantreg.rfsrc.R               |only
 randomForestSRC-2.9.0/randomForestSRC/R/rfsrc.R                        |  142 
 randomForestSRC-2.9.0/randomForestSRC/R/rfsrc.cart.R                   |only
 randomForestSRC-2.9.0/randomForestSRC/R/rfsrc.fast.R                   |only
 randomForestSRC-2.9.0/randomForestSRC/R/sgreedy.cart.R                 |only
 randomForestSRC-2.9.0/randomForestSRC/R/sgreedy.rfsrc.R                |only
 randomForestSRC-2.9.0/randomForestSRC/R/subsample.rfsrc.R              |   58 
 randomForestSRC-2.9.0/randomForestSRC/R/synthetic.rfsrc.R              |only
 randomForestSRC-2.9.0/randomForestSRC/R/tune.nodesize.rfsrc.R          |only
 randomForestSRC-2.9.0/randomForestSRC/R/tune.rfsrc.R                   |   11 
 randomForestSRC-2.9.0/randomForestSRC/R/utilities.R                    |  123 
 randomForestSRC-2.9.0/randomForestSRC/R/vimp.rfsrc.R                   |    2 
 randomForestSRC-2.9.0/randomForestSRC/configure                        |   18 
 randomForestSRC-2.9.0/randomForestSRC/configure.ac                     |    2 
 randomForestSRC-2.9.0/randomForestSRC/data/breast.rda                  |binary
 randomForestSRC-2.9.0/randomForestSRC/data/follic.rda                  |binary
 randomForestSRC-2.9.0/randomForestSRC/data/hd.rda                      |binary
 randomForestSRC-2.9.0/randomForestSRC/data/housing.rda                 |binary
 randomForestSRC-2.9.0/randomForestSRC/data/nutrigenomic.rda            |binary
 randomForestSRC-2.9.0/randomForestSRC/data/pbc.rda                     |binary
 randomForestSRC-2.9.0/randomForestSRC/data/vdv.rda                     |binary
 randomForestSRC-2.9.0/randomForestSRC/data/veteran.rda                 |binary
 randomForestSRC-2.9.0/randomForestSRC/data/wihs.rda                    |binary
 randomForestSRC-2.9.0/randomForestSRC/data/wine.rda                    |binary
 randomForestSRC-2.9.0/randomForestSRC/inst/NEWS                        |   13 
 randomForestSRC-2.9.0/randomForestSRC/man/find.interaction.rfsrc.Rd    |    9 
 randomForestSRC-2.9.0/randomForestSRC/man/holdout.vimp.rfsrc.Rd        |only
 randomForestSRC-2.9.0/randomForestSRC/man/imbalanced.rfsrc.Rd          |  123 
 randomForestSRC-2.9.0/randomForestSRC/man/impute.rfsrc.Rd              |    6 
 randomForestSRC-2.9.0/randomForestSRC/man/max.subtree.rfsrc.Rd         |   10 
 randomForestSRC-2.9.0/randomForestSRC/man/partial.rfsrc.Rd             |    2 
 randomForestSRC-2.9.0/randomForestSRC/man/plot.competing.risk.rfsrc.Rd |   26 
 randomForestSRC-2.9.0/randomForestSRC/man/plot.quantreg.rfsrc.Rd       |only
 randomForestSRC-2.9.0/randomForestSRC/man/plot.rfsrc.Rd                |    4 
 randomForestSRC-2.9.0/randomForestSRC/man/plot.subsample.rfsrc.Rd      |    9 
 randomForestSRC-2.9.0/randomForestSRC/man/plot.survival.rfsrc.Rd       |   76 
 randomForestSRC-2.9.0/randomForestSRC/man/plot.variable.rfsrc.Rd       |    6 
 randomForestSRC-2.9.0/randomForestSRC/man/predict.rfsrc.Rd             |  177 
 randomForestSRC-2.9.0/randomForestSRC/man/print.rfsrc.Rd               |    4 
 randomForestSRC-2.9.0/randomForestSRC/man/quantreg.rfsrc.Rd            |only
 randomForestSRC-2.9.0/randomForestSRC/man/randomForestSRC_package.Rd   |  129 
 randomForestSRC-2.9.0/randomForestSRC/man/rfsrc.Rd                     |  890 -
 randomForestSRC-2.9.0/randomForestSRC/man/rfsrc.fast.Rd                |only
 randomForestSRC-2.9.0/randomForestSRC/man/sgreedy.Rd                   |only
 randomForestSRC-2.9.0/randomForestSRC/man/stat.split.rfsrc.Rd          |    4 
 randomForestSRC-2.9.0/randomForestSRC/man/subsample.rfsrc.Rd           |   68 
 randomForestSRC-2.9.0/randomForestSRC/man/synthetic.rfsrc.Rd           |only
 randomForestSRC-2.9.0/randomForestSRC/man/tune.rfsrc.Rd                |   65 
 randomForestSRC-2.9.0/randomForestSRC/man/var.select.rfsrc.Rd          |   11 
 randomForestSRC-2.9.0/randomForestSRC/man/vimp.rfsrc.Rd                |    8 
 randomForestSRC-2.9.0/randomForestSRC/man/wine.Rd                      |    6 
 randomForestSRC-2.9.0/randomForestSRC/src/randomForestSRC.c            | 6928 ++++------
 randomForestSRC-2.9.0/randomForestSRC/src/randomForestSRC.h            |  822 -
 randomForestSRC-2.9.0/randomForestSRC/src/splitCustom.c                |   18 
 79 files changed, 5140 insertions(+), 6269 deletions(-)

More information about randomForestSRC at CRAN
Permanent link

Package dqrng updated to version 0.2.0 with previous version 0.1.1 dated 2019-03-11

Title: Fast Pseudo Random Number Generators
Description: Several fast random number generators are provided as C++ header only libraries: The PCG family by O'Neill (2014 <https://www.cs.hmc.edu/tr/hmc-cs-2014-0905.pdf>) as well as Xoroshiro128+ and Xoshiro256+ by Blackman and Vigna (2018 <arXiv:1805.01407>). In addition fast functions for generating random numbers according to a uniform, normal and exponential distribution are included. The latter two use the Ziggurat algorithm originally proposed by Marsaglia and Tsang (2000, <doi:10.18637/jss.v005.i08>). These functions are exported to R and as a C++ interface and are enabled for use with the default 64 bit generator from the PCG family, Xoroshiro128+ and Xoshiro256+ as well as the 64 bit version of the 20 rounds Threefry engine (Salmon et al., 2011 <doi:10.1145/2063384.2063405>) as provided by the package 'sitmo'.
Author: Ralf Stubner [aut, cre], daqana GmbH [cph], David Blackman [ctb], Melissa O'Neill [ctb], Sebastiano Vigna [ctb], Aaron Lun [ctb]
Maintainer: Ralf Stubner <ralf.stubner@daqana.com>

Diff between dqrng versions 0.1.1 dated 2019-03-11 and 0.2.0 dated 2019-04-22

 DESCRIPTION                       |    6 
 MD5                               |   60 +++---
 NAMESPACE                         |    2 
 NEWS.md                           |   16 +
 R/RcppExports.R                   |   24 ++
 R/dqsample.R                      |only
 R/dqset.seed.R                    |   11 +
 README.md                         |   72 +++++++-
 build/vignette.rds                |binary
 inst/doc/cpp-api.R                |only
 inst/doc/cpp-api.Rmd              |only
 inst/doc/cpp-api.html             |only
 inst/doc/dqrng.R                  |    6 
 inst/doc/dqrng.Rmd                |   57 +++++-
 inst/doc/dqrng.html               |  333 ++++++++++++++++++++------------------
 inst/doc/parallel.R               |   16 +
 inst/doc/parallel.Rmd             |   85 ++++++---
 inst/doc/parallel.html            |  232 +++++++++++++++-----------
 inst/include/R_randgen.h          |   13 -
 inst/include/dqrng_RcppExports.h  |  108 +++++++++++-
 inst/include/dqrng_distribution.h |   10 -
 inst/include/dqrng_generator.h    |  135 ++++++++++++++-
 inst/include/minimal_int_set.h    |only
 inst/include/xoshiro.h            |   59 ++++++
 man/dqrng-functions.Rd            |   10 +
 man/dqsample.Rd                   |only
 src/RcppExports.cpp               |  205 ++++++++++++++++++++++-
 src/dqrng.cpp                     |  149 +++++++++++++++--
 tests/testthat/cpp/default.cpp    |   26 ++
 tests/testthat/test-cpp.R         |   12 +
 tests/testthat/test-generators.R  |   90 ++++++++++
 tests/testthat/test-sample.R      |only
 vignettes/cpp-api.Rmd             |only
 vignettes/dqrng.Rmd               |   57 +++++-
 vignettes/parallel.Rmd            |   85 ++++++---
 35 files changed, 1475 insertions(+), 404 deletions(-)

More information about dqrng at CRAN
Permanent link

Package taxonomizr updated to version 0.5.3 with previous version 0.5.1 dated 2018-08-31

Title: Functions to Work with NCBI Accessions and Taxonomy
Description: Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to downloads NCBI data dumps and create a local database for fast and local taxonomic assignment.
Author: Scott Sherrill-Mix [aut, cre]
Maintainer: Scott Sherrill-Mix <shescott@upenn.edu>

Diff between taxonomizr versions 0.5.1 dated 2018-08-31 and 0.5.3 dated 2019-04-22

 taxonomizr-0.5.1/taxonomizr/vignettes/usage.md          |only
 taxonomizr-0.5.3/taxonomizr/DESCRIPTION                 |   12 
 taxonomizr-0.5.3/taxonomizr/MD5                         |   33 
 taxonomizr-0.5.3/taxonomizr/R/taxa.R                    |   12 
 taxonomizr-0.5.3/taxonomizr/README.md                   |  113 +-
 taxonomizr-0.5.3/taxonomizr/inst/doc/usage.R            |    2 
 taxonomizr-0.5.3/taxonomizr/inst/doc/usage.Rmd          |  113 +-
 taxonomizr-0.5.3/taxonomizr/inst/doc/usage.html         |  657 +++++++++++-----
 taxonomizr-0.5.3/taxonomizr/man/getAccession2taxid.Rd   |    2 
 taxonomizr-0.5.3/taxonomizr/man/getAccessions.Rd        |    3 
 taxonomizr-0.5.3/taxonomizr/man/getTaxonomy2.Rd         |    6 
 taxonomizr-0.5.3/taxonomizr/man/prepareDatabase.Rd      |    4 
 taxonomizr-0.5.3/taxonomizr/man/read.accession2taxid.Rd |    4 
 taxonomizr-0.5.3/taxonomizr/man/read.names.sql.Rd       |    3 
 taxonomizr-0.5.3/taxonomizr/man/read.nodes.sql.Rd       |    3 
 taxonomizr-0.5.3/taxonomizr/man/streamingRead.Rd        |    4 
 taxonomizr-0.5.3/taxonomizr/tests/testthat/test_taxa.R  |   12 
 taxonomizr-0.5.3/taxonomizr/vignettes/usage.Rmd         |  113 +-
 18 files changed, 741 insertions(+), 355 deletions(-)

More information about taxonomizr at CRAN
Permanent link

Package subtee updated to version 0.3-5 with previous version 0.3-4 dated 2019-01-07

Title: Subgroup Treatment Effect Estimation in Clinical Trials
Description: Naive and adjusted treatment effect estimation for subgroups. Model averaging (Bornkamp et.al, 2016 <doi:10.1002/pst.1796>) and bagging (Rosenkranz, 2016 <doi:10.1002/bimj.201500147>) are proposed to address the problem of selection bias in treatment effect estimates for subgroups. The package can be used for all commonly encountered type of outcomes in clinical trials (continuous, binary, survival, count). Additional functions are provided to build the subgroup variables to be used and to plot the results using forest plots.
Author: Nicolas Ballarini [aut, cre], Bjoern Bornkamp [aut], Marius Thomas [aut, cre], Baldur Magnusson [ctb]
Maintainer: Nicolas Ballarini <nicolas.ballarini@meduniwien.ac.at>

Diff between subtee versions 0.3-4 dated 2019-01-07 and 0.3-5 dated 2019-04-22

 DESCRIPTION                      |    8 -
 MD5                              |   28 ++---
 NAMESPACE                        |    3 
 NEWS.md                          |    9 +
 R/bagged.R                       |  196 ++++++++++++++++++---------------------
 R/generic-funcs-subtee-add.R     |only
 R/generic-funcs-subtee.R         |   18 ++-
 R/modav.R                        |   93 +-----------------
 R/plot-funcs.R                   |    4 
 inst/doc/plotting_functions.html |    4 
 inst/doc/subbuild_function.html  |    4 
 inst/doc/subtee_package.R        |    2 
 inst/doc/subtee_package.Rmd      |    2 
 inst/doc/subtee_package.html     |   19 +--
 man/confint.subtee.Rd            |only
 vignettes/subtee_package.Rmd     |    2 
 16 files changed, 160 insertions(+), 232 deletions(-)

More information about subtee at CRAN
Permanent link

Package shiny updated to version 1.3.2 with previous version 1.3.1 dated 2019-04-12

Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web applications with R. Automatic "reactive" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre], Joe Cheng [aut], JJ Allaire [aut], Yihui Xie [aut], Jonathan McPherson [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Dave Gandy [ctb, cph] (Font-Awesome font), Brian Reavis [ctb, cph] (selectize.js library), Kristopher Michael Kowal [ctb, cph] (es5-shim library), es5-shim contributors [ctb, cph] (es5-shim library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library), SpryMedia Limited [ctb, cph] (DataTables library), John Fraser [ctb, cph] (showdown.js library), John Gruber [ctb, cph] (showdown.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang <winston@rstudio.com>

Diff between shiny versions 1.3.1 dated 2019-04-12 and 1.3.2 dated 2019-04-22

 DESCRIPTION                  |    6 ++--
 MD5                          |   12 ++++----
 NEWS.md                      |   14 ++++-----
 R/app.R                      |   16 +++++++++--
 R/server.R                   |   61 ++++++++++++++++++++++++++++++++++++++++++-
 inst/www/shared/shiny.js     |    2 -
 inst/www/shared/shiny.min.js |    4 +-
 7 files changed, 93 insertions(+), 22 deletions(-)

More information about shiny at CRAN
Permanent link

Package sdnet updated to version 2.4.0 with previous version 2.3.8 dated 2016-05-09

Title: Soft-Discretization-Based Bayesian Network Inference
Description: Fitting discrete Bayesian networks using soft-discretized data. Soft-discretization is based on mixture of normal distributions. Also implemented is a supervised Bayesian network learning employing Kullback-Leibler divergence. For more information see Balov (2013) <DOI:10.1186/1755-8794-6-S3-S1>.
Author: Nikolay Balov
Maintainer: Nikolay Balov <nhbalov@gmail.com>

Diff between sdnet versions 2.3.8 dated 2016-05-09 and 2.4.0 dated 2019-04-22

 DESCRIPTION            |    8 ++---
 MD5                    |   66 +++++++++++++++++++++---------------------
 NAMESPACE              |    2 -
 R/def.R                |   12 +++----
 R/joint.prob.R         |    4 +-
 src/cache.cpp          |    2 -
 src/cache.h            |    2 -
 src/catnet_base.h      |    4 +-
 src/catnet_entropy.cpp |    2 -
 src/catnet_quant.cpp   |    2 -
 src/catnet_rexport.cpp |   55 ++++++++++++++++-------------------
 src/catnet_rexport.h   |    2 -
 src/catnet_search.h    |    2 -
 src/catnetd.h          |    2 -
 src/catnetp.h          |    2 -
 src/ccnInit.c          |    3 +
 src/dag_list.h         |    2 -
 src/dag_search.h       |    2 -
 src/dag_search_dc.h    |    2 -
 src/problist.h         |    2 -
 src/pthread.cpp        |    2 -
 src/rcatnet.cpp        |   76 ++++++++++++++++++++++++++-----------------------
 src/rcatnet.h          |    2 -
 src/rcatnet_hist.cpp   |    2 -
 src/rcatnet_hist.h     |    2 -
 src/rcatnet_prob.cpp   |    2 -
 src/rcatnet_sa.cpp     |    2 -
 src/rcatnet_sa.h       |    2 -
 src/rcatnet_search.cpp |    2 -
 src/rcatnet_search.h   |    2 -
 src/search_params.h    |    2 -
 src/thread.h           |    2 -
 src/utils.cpp          |    2 -
 src/utils.h            |    2 -
 34 files changed, 141 insertions(+), 139 deletions(-)

More information about sdnet at CRAN
Permanent link

Package quotedargs updated to version 0.1.3 with previous version 0.1.2 dated 2018-03-26

Title: A Way of Writing Functions that Quote their Arguments
Description: A facility for writing functions that quote their arguments, may sometimes evaluate them in the environment where they were quoted, and may pass them as quoted to other functions.
Author: Radford Neal
Maintainer: Radford Neal <radfordneal@gmail.com>

Diff between quotedargs versions 0.1.2 dated 2018-03-26 and 0.1.3 dated 2019-04-22

 DESCRIPTION      |    6 +++---
 MD5              |    6 +++---
 NEWS             |    4 ++++
 src/quotedargs.c |   10 ++++++++--
 4 files changed, 18 insertions(+), 8 deletions(-)

More information about quotedargs at CRAN
Permanent link

Package plothelper updated to version 0.1.1 with previous version 0.1.0 dated 2019-04-07

Title: New Plots Based on 'ggplot2' and Functions to Create Regular Shapes
Description: An extension to 'ggplot2' with miscellaneous functions. It contains two groups of functions: Functions in the first group draw 'ggplot2' - based plots: gg_shading_bar() draws barplot with shading colors in each bar. geom_rect_cm(), geom_circle_cm() and geom_ellipse_cm() draw rectangles, circles and ellipses with centimeter as their unit. Thus their sizes do not change when the coordinate system or the aspect ratio changes. Functions in the second group generate coordinates for regular shapes and make linear transformations.
Author: Jiang Wu [aut, cre] (from Capital Normal University)
Maintainer: Jiang Wu <textidea@sina.com>

Diff between plothelper versions 0.1.0 dated 2019-04-07 and 0.1.1 dated 2019-04-22

 DESCRIPTION              |   10 +++++-----
 MD5                      |   12 +++++++++---
 NAMESPACE                |    3 +++
 R/count_each_column.R    |only
 R/gg_shading_bar.R       |    9 +++++++--
 R/round_text.R           |only
 R/spathxy.R              |only
 man/count_each_column.Rd |only
 man/round_text.Rd        |only
 man/spathxy.Rd           |only
 10 files changed, 24 insertions(+), 10 deletions(-)

More information about plothelper at CRAN
Permanent link

Package FedData updated to version 2.5.7 with previous version 2.5.6 dated 2019-01-11

Title: Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from several federated data sources (mainly sources maintained by the US Federal government). Currently, the package enables extraction from seven datasets: The National Elevation Dataset digital elevation models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic (SSURGO) database from the National Cooperative Soil Survey (NCSS), which is led by the Natural Resources Conservation Service (NRCS) under the USDA; the Global Historical Climatology Network (GHCN), coordinated by National Climatic Data Center at NOAA; the Daymet gridded estimates of daily weather parameters for North America, version 3, available from the Oak Ridge National Laboratory's Distributed Active Archive Center (DAAC); the International Tree Ring Data Bank; and the National Land Cover Database (NLCD).
Author: R. Kyle Bocinsky [aut, cre], Dylan Beaudette [ctb], Scott Chamberlain [ctb]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>

Diff between FedData versions 2.5.6 dated 2019-01-11 and 2.5.7 dated 2019-04-22

 DESCRIPTION                               |   18 +++++++++---------
 MD5                                       |   28 ++++++++++++++--------------
 NEWS.md                                   |    3 +++
 README.md                                 |   17 +++++++++++------
 man/figures/README-unnamed-chunk-11-1.png |binary
 man/figures/README-unnamed-chunk-13-2.png |binary
 man/figures/README-unnamed-chunk-13-4.png |binary
 man/figures/README-unnamed-chunk-13-6.png |binary
 man/figures/README-unnamed-chunk-9-1.png  |binary
 tests/testthat/test.DAYMET.R              |    2 ++
 tests/testthat/test.GHCN.R                |    1 +
 tests/testthat/test.NED.R                 |    4 ++++
 tests/testthat/test.NHD.R                 |    4 ++++
 tests/testthat/test.NLCD.R                |    2 ++
 tests/testthat/test.SSURGO.R              |    5 +++++
 15 files changed, 55 insertions(+), 29 deletions(-)

More information about FedData at CRAN
Permanent link

Package crch updated to version 1.0-2 with previous version 1.0-1 dated 2018-01-23

Title: Censored Regression with Conditional Heteroscedasticity
Description: Different approaches to censored or truncated regression with conditional heteroscedasticity are provided. First, continuous distributions can be used for the (right and/or left censored or truncated) response with separate linear predictors for the mean and variance. Second, cumulative link models for ordinal data (obtained by interval-censoring continuous data) can be employed for heteroscedastic extended logistic regression (HXLR). In the latter type of models, the intercepts depend on the thresholds that define the intervals.
Author: Jakob Messner [aut, cre] (<https://orcid.org/0000-0002-1027-3673>), Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>), Reto Stauffer [aut] (<https://orcid.org/0000-0002-3798-5507>)
Maintainer: Jakob Messner <jwmm@elektro.dtu.dk>

Diff between crch versions 1.0-1 dated 2018-01-23 and 1.0-2 dated 2019-04-22

 DESCRIPTION                      |   19 +++++++++++--------
 MD5                              |   12 ++++++------
 build/partial.rdb                |binary
 build/vignette.rds               |binary
 inst/doc/crch.pdf                |binary
 tests/Examples/crch-Ex.Rout.save |   23 ++++++++++++++---------
 vignettes/crch.Rout.save         |    2 +-
 7 files changed, 32 insertions(+), 24 deletions(-)

More information about crch at CRAN
Permanent link

Package ensemblepp (with last version 0.1-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-09-20 0.1-0

Permanent link
Package onlineVAR (with last version 0.1-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-02-26 0.1-0

Permanent link
Package GGMselect updated to version 0.1-12.2 with previous version 0.1-12.1 dated 2018-02-01

Title: Gaussian Graphs Models Selection
Description: Graph estimation in Gaussian Graphical Models. The main functions return the adjacency matrix of an undirected graph estimated from a data matrix.
Author: Annie Bouvier, Christophe Giraud, Sylvie Huet, Verzelen N.
Maintainer: ORPHANED

Diff between GGMselect versions 0.1-12.1 dated 2018-02-01 and 0.1-12.2 dated 2019-04-22

 DESCRIPTION               |   10 
 MD5                       |   28 
 tests/bsch.Rout.save      |    8 
 tests/penInf.Rout.save    | 2260 ++++++++++++++---------------
 tests/sh9.2012.Rout.save  | 3474 +++++++++++++++++++++++-----------------------
 tests/shPUR.Rout.save     | 2720 ++++++++++++++++++------------------
 tests/test1Fast.Rout.save |  446 ++---
 tests/test1QE.Rout.save   |  297 +--
 tests/test2Fast.Rout.save |  546 +++----
 tests/test2QE.Rout.save   |  127 -
 tests/test3Fast.Rout.save |  468 +++---
 tests/test3QE.Rout.save   |  111 -
 tests/test5Fast.Rout.save |  492 +++---
 tests/test7Fast.Rout.save |  516 +++---
 tests/testMyFam.Rout.save |   10 
 15 files changed, 5752 insertions(+), 5761 deletions(-)

More information about GGMselect at CRAN
Permanent link

Package fpc updated to version 2.1-11.2 with previous version 2.1-11.1 dated 2018-07-20

Title: Flexible Procedures for Clustering
Description: Various methods for clustering and cluster validation. Fixed point clustering. Linear regression clustering. Clustering by merging Gaussian mixture components. Symmetric and asymmetric discriminant projections for visualisation of the separation of groupings. Cluster validation statistics for distance based clustering including corrected Rand index. Cluster-wise cluster stability assessment. Methods for estimation of the number of clusters: Calinski-Harabasz, Tibshirani and Walther's prediction strength, Fang and Wang's bootstrap stability. Gaussian/multinomial mixture fitting for mixed continuous/categorical variables. Variable-wise statistics for cluster interpretation. DBSCAN clustering. Interface functions for many clustering methods implemented in R, including estimating the number of clusters with kmeans, pam and clara. Modality diagnosis for Gaussian mixtures. For an overview see package?fpc.
Author: Christian Hennig <c.hennig@ucl.ac.uk>
Maintainer: ORPHANED

Diff between fpc versions 2.1-11.1 dated 2018-07-20 and 2.1-11.2 dated 2019-04-22

 DESCRIPTION                     |    8 -
 MD5                             |    4 
 tests/Examples/fpc-Ex.Rout.save |  268 +++++++++++++++++++---------------------
 3 files changed, 136 insertions(+), 144 deletions(-)

More information about fpc at CRAN
Permanent link

Package TSSS updated to version 1.2.4 with previous version 1.2.3 dated 2019-04-15

Title: Time Series Analysis with State Space Model
Description: Functions for statistical analysis, modeling and simulation of time series with state space model, based on the methodology in Kitagawa (1993, ISBN: 4-00-007703-1 and 2005, ISBN: 4-00-005455-4).
Author: The Institute of Statistical Mathematics, based on the program by Genshiro Kitagawa
Maintainer: Masami Saga <msaga@mtb.biglobe.ne.jp>

Diff between TSSS versions 1.2.3 dated 2019-04-15 and 1.2.4 dated 2019-04-22

 DESCRIPTION          |    6 +++---
 MD5                  |   16 +++++++++++-----
 inst/doc/changes.txt |    9 +++++++++
 src/chebyshev.c      |only
 src/comsub.f         |    5 +++--
 src/denstyf.f        |    5 +++--
 src/gamma.c          |only
 src/gamma.h          |only
 src/init.c           |    2 +-
 src/lgamma.c         |only
 src/lgammacor.c      |only
 src/stirlerr.c       |only
 12 files changed, 30 insertions(+), 13 deletions(-)

More information about TSSS at CRAN
Permanent link

Package FSelectorRcpp updated to version 0.3.1 with previous version 0.3.0 dated 2018-11-12

Title: 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature Selection Algorithms with a Sparse Matrix Support
Description: 'Rcpp' (free of 'Java'/'Weka') implementation of 'FSelector' entropy-based feature selection algorithms based on an MDL discretization (Fayyad U. M., Irani K. B.: Multi-Interval Discretization of Continuous-Valued Attributes for Classification Learning. In 13'th International Joint Conference on Uncertainly in Artificial Intelligence (IJCAI93), pages 1022-1029, Chambery, France, 1993.) <https://www.ijcai.org/Proceedings/93-2/Papers/022.pdf> with a sparse matrix support. It is also equipped with a parallel backend.
Author: Zygmunt Zawadzki [aut, cre], Marcin Kosinski [aut], Krzysztof Slomczynski [ctb], Damian Skrzypiec [ctb]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>

Diff between FSelectorRcpp versions 0.3.0 dated 2018-11-12 and 0.3.1 dated 2019-04-22

 DESCRIPTION                     |    6 +++---
 MD5                             |   10 +++++-----
 build/vignette.rds              |binary
 inst/doc/integer-variables.html |    4 ++--
 src/Makevars                    |   12 +-----------
 src/Makevars.win                |    2 +-
 6 files changed, 12 insertions(+), 22 deletions(-)

More information about FSelectorRcpp at CRAN
Permanent link

Package DepthProc updated to version 2.1.1 with previous version 2.0.4 dated 2018-09-02

Title: Statistical Depth Functions for Multivariate Analysis
Description: Data depth concept offers a variety of powerful and user friendly tools for robust exploration and inference for multivariate data. The offered techniques may be successfully used in cases of lack of our knowledge on parametric models generating data due to their nature. The package consist of among others implementations of several data depth techniques involving multivariate quantile-quantile plots, multivariate scatter estimators, multivariate Wilcoxon tests and robust regressions.
Author: Zygmunt Zawadzki [aut, cre], Daniel Kosiorowski [aut], Krzysztof Slomczynski [ctb], Mateusz Bocian [ctb], Anna Wegrzynkiewicz [ctb]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>

Diff between DepthProc versions 2.0.4 dated 2018-09-02 and 2.1.1 dated 2019-04-22

 ChangeLog                             |    9 +
 DESCRIPTION                           |   13 +-
 MD5                                   |   22 ++-
 R/RcppExports.R                       |   60 ++++-----
 R/depth.R                             |   11 +
 R/depthContour.R                      |   58 ++++++++-
 README.md                             |only
 man/depthContour.Rd                   |   18 ++
 man/figures                           |only
 src/Makevars                          |    8 -
 src/RcppExports.cpp                   |  208 +++++++++++++++++-----------------
 tests/testthat/test-ddplot.R          |only
 tests/testthat/test-depth-basic-api.R |only
 13 files changed, 245 insertions(+), 162 deletions(-)

More information about DepthProc at CRAN
Permanent link

Package multimark updated to version 2.1.0 with previous version 2.0.1 dated 2017-06-30

Title: Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks
Description: Traditional and spatial capture-mark-recapture analysis with multiple non-invasive marks. The models implemented in 'multimark' combine encounter history data arising from two different non-invasive ``marks'', such as images of left-sided and right-sided pelage patterns of bilaterally asymmetrical species, to estimate abundance and related demographic parameters while accounting for imperfect detection. Bayesian models are specified using simple formulae and fitted using Markov chain Monte Carlo. Addressing deficiencies in currently available software, 'multimark' also provides a user-friendly interface for performing Bayesian multimodel inference using non-spatial or spatial capture-recapture data consisting of a single conventional mark or multiple non-invasive marks.
Author: Brett T. McClintock [aut, cre], Acho Arnold [ctb, cph] (C original matrix library, https://github.com/najela/matrix.h), Barry Brown [ctb] (Fortran original ranlib library), James Lovato [ctb] (Fortran original ranlib library), John Burkardt [ctb] (C original ranlib library, http://people.sc.fsu.edu/~jburkardt/c_src/ranlib), Cleve Moler [ctb] (C original linpack library, http://www.kkant.net/geist/ranlib/), Arjun Gopalaswamy [ctb] (modified snippets of R package SPACECAP code)
Maintainer: Brett T. McClintock <brett.mcclintock@noaa.gov>

Diff between multimark versions 2.0.1 dated 2017-06-30 and 2.1.0 dated 2019-04-22

 DESCRIPTION                |   16 +++---
 MD5                        |   54 ++++++++++----------
 NAMESPACE                  |  119 ++++++++++++++++++++++++++++++---------------
 NEWS                       |   15 +++++
 R/CJS.R                    |   39 ++++++++++----
 R/Closed.R                 |   41 ++++++++++++---
 R/ClosedSCR.R              |   94 +++++++++++++++++++++++------------
 R/multimark_functions.R    |   43 +++++++++++++---
 man/bobcatSCR.Rd           |    2 
 man/getdensityClosedSCR.Rd |    1 
 man/getprobsCJS.Rd         |    1 
 man/getprobsClosed.Rd      |    1 
 man/getprobsClosedSCR.Rd   |    1 
 man/markCJS.Rd             |   13 ++--
 man/markClosed.Rd          |   12 ++--
 man/markClosedSCR.Rd       |   10 ++-
 man/multimarkCJS.Rd        |   16 +++---
 man/multimarkClosed.Rd     |   15 +++--
 man/multimarkClosedSCR.Rd  |   20 ++++---
 man/multimodelCJS.Rd       |   12 ++--
 man/multimodelClosed.Rd    |    9 +--
 man/multimodelClosedSCR.Rd |    1 
 man/plotSpatialData.Rd     |    1 
 man/processdata.Rd         |    1 
 man/processdataSCR.Rd      |    2 
 man/simdataCJS.Rd          |    1 
 man/simdataClosed.Rd       |    1 
 man/simdataClosedSCR.Rd    |    1 
 28 files changed, 363 insertions(+), 179 deletions(-)

More information about multimark at CRAN
Permanent link

Package Rramas updated to version 0.1-6 with previous version 0.1-5 dated 2017-11-24

Title: Matrix Population Models
Description: Analyzes and predicts from matrix population models (Caswell 2006) <doi:10.1002/9781118445112.stat07481>.
Author: Marcelino de la Cruz
Maintainer: Marcelino de la Cruz <marcelino.delacruz@urjc.es>

Diff between Rramas versions 0.1-5 dated 2017-11-24 and 0.1-6 dated 2019-04-22

 DESCRIPTION       |   10 +++++-----
 MD5               |    6 +++---
 man/as.tmatrix.Rd |    3 +--
 man/projectn.Rd   |    3 +++
 4 files changed, 12 insertions(+), 10 deletions(-)

More information about Rramas at CRAN
Permanent link

Package DDD updated to version 4.0 with previous version 3.9 dated 2019-03-19

Title: Diversity-Dependent Diversification
Description: Implements maximum likelihood and bootstrap methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent, under various models including various types of key innovations. See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, <DOI:10.1098/rspb.2011.1439>, Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, <DOI:10.1086/667574> and Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099, <DOI:10.1111/2041-210X.12565>. Also contains functions to simulate the diversity-dependent process.
Author: Rampal S. Etienne & Bart Haegeman
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>

Diff between DDD versions 3.9 dated 2019-03-19 and 4.0 dated 2019-04-22

 DESCRIPTION      |    8 
 MD5              |   33 +--
 NAMESPACE        |    1 
 R/bd_ML.R        |    6 
 R/bd_loglik.R    |  605 ++++++++++++++++++++++++++++---------------------------
 R/dd_KI_ML.R     |  144 ++++++-------
 R/dd_KI_loglik.R |   60 -----
 R/dd_ML.R        |  140 ++++++------
 R/dd_MS_ML.R     |  138 ++++++------
 R/dd_MS_loglik.R |   33 ---
 R/dd_SR_ML.R     |  175 +++++++--------
 R/dd_SR_loglik.R |  122 ++---------
 R/dd_loglik.R    |  341 ++++++++++++++-----------------
 R/dd_utils.R     |   41 ++-
 R/td_sim.R       |  133 ++++++------
 man/bd_loglik.Rd |    6 
 man/optimizer.Rd |    2 
 man/td_sim.Rd    |only
 18 files changed, 944 insertions(+), 1044 deletions(-)

More information about DDD at CRAN
Permanent link

Package harvestr (with last version 0.7.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-08-29 0.7.1
2016-07-21 0.7.0
2014-05-27 0.6.0
2013-09-13 0.5.2
2012-06-23 0.5.1
2012-06-09 0.4
2012-05-04 0.3
2012-03-13 0.1

Permanent link
Package pstest (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-11-21 0.1.1

Permanent link
Package MenuCollection (with last version 1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-01-21 1.2
2015-01-05 1.1
2014-12-17 1.0

Permanent link
Package conditions (with last version 0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-01-18 0.1

Permanent link
Package R2STATS (with last version 0.68-39) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-12-08 0.68-39

Permanent link
Package NTsets (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-09-16 1.0

Permanent link
Package RGtk2Extras (with last version 0.6.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-10-23 0.6.1

Permanent link
Package HomoPolymer (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-01-12 1.0

Permanent link
Package Zelig updated to version 5.1.6.1 with previous version 5.1.6 dated 2018-02-27

Title: Everyone's Statistical Software
Description: A framework that brings together an abundance of common statistical models found across packages into a unified interface, and provides a common architecture for estimation and interpretation, as well as bridging functions to absorb increasingly more models into the package. Zelig allows each individual package, for each statistical model, to be accessed by a common uniformly structured call and set of arguments. Moreover, Zelig automates all the surrounding building blocks of a statistical work-flow--procedures and algorithms that may be essential to one user's application but which the original package developer did not use in their own research and might not themselves support. These include bootstrapping, jackknifing, and re-weighting of data. In particular, Zelig automatically generates predicted and simulated quantities of interest (such as relative risk ratios, average treatment effects, first differences and predicted and expected values) to interpret and visualize complex models.
Author: Christine Choirat [aut], Christopher Gandrud [aut, cre], James Honaker [aut], Kosuke Imai [aut], Gary King [aut], Olivia Lau [aut], IQSS Harvard University [cph]
Maintainer: Christopher Gandrud <zelig.zee@gmail.com>

Diff between Zelig versions 5.1.6 dated 2018-02-27 and 5.1.6.1 dated 2019-04-22

 Zelig-5.1.6.1/Zelig/DESCRIPTION              |    6 +++---
 Zelig-5.1.6.1/Zelig/MD5                      |    6 +++---
 Zelig-5.1.6.1/Zelig/data/CigarettesSW.tab.gz |only
 Zelig-5.1.6.1/Zelig/tests/testthat.R         |    1 +
 Zelig-5.1.6/Zelig/data/CigarettesSW.tab      |only
 5 files changed, 7 insertions(+), 6 deletions(-)

More information about Zelig at CRAN
Permanent link

Package virtualspecies updated to version 1.4-4.1 with previous version 1.4-4 dated 2018-09-10

Title: Generation of Virtual Species Distributions
Description: Provides a framework for generating virtual species distributions, a procedure increasingly used in ecology to improve species distribution models. This package integrates the existing methodological approaches with the objective of generating virtual species distributions with increased ecological realism.
Author: Boris Leroy [cre, aut], Christine N. Meynard [ctb], Celine Bellard [ctb], Franck Courchamp [ctb], Robin Delsol [ctb], Willson Gaul [ctb]
Maintainer: Boris Leroy <leroy.boris@gmail.com>

Diff between virtualspecies versions 1.4-4 dated 2018-09-10 and 1.4-4.1 dated 2019-04-22

 DESCRIPTION             |    6 +++---
 MD5                     |    4 ++--
 man/generateRandomSp.Rd |    1 +
 3 files changed, 6 insertions(+), 5 deletions(-)

More information about virtualspecies at CRAN
Permanent link

Package Smisc updated to version 0.3.9.1 with previous version 0.3.9 dated 2017-11-21

Title: Sego Miscellaneous
Description: A collection of functions for statistical computing and data manipulation in R. Includes routines for data ingestion, operating on dataframes and matrices, conversion to and from lists, converting factors, filename manipulation, programming utilities, parallelization, plotting, statistical and mathematical operations, and time series.
Author: Landon Sego [aut, cre]
Maintainer: Landon Sego <LHS@byu.net>

Diff between Smisc versions 0.3.9 dated 2017-11-21 and 0.3.9.1 dated 2019-04-22

 DESCRIPTION      |    6 +++---
 MD5              |    4 ++--
 tests/testthat.R |    1 +
 3 files changed, 6 insertions(+), 5 deletions(-)

More information about Smisc at CRAN
Permanent link

Package robustloggamma updated to version 1.0-2.1 with previous version 1.0-2 dated 2016-05-16

Title: Robust Estimation of the Generalized log Gamma Model
Description: Robust estimation of the generalized log gamma model is provided using Quantile Tau estimator, Weighted Likelihood estimator and Truncated Maximum Likelihood estimator. Functions for regression and censored data are also available.
Author: Claudio Agostinelli <claudio.agostinelli@unitn.it>, Alfio Marazzi <Alfio.Marazzi@chuv.ch>, Victor Yohai <vyohai@uolsinectis.com.ar> and Alex Randriamiharisoa <Alex.Randriamiharisoa@chuv.ch>
Maintainer: Claudio Agostinelli <claudio.agostinelli@unitn.it>

Diff between robustloggamma versions 1.0-2 dated 2016-05-16 and 1.0-2.1 dated 2019-04-22

 DESCRIPTION                      |    6 +++---
 MD5                              |   12 ++++++------
 tests/loggammacenslmrob.ML.R     |    2 ++
 tests/loggammacenslmrob.MM.R     |    2 ++
 tests/loggammacenslmrob.S.R      |    2 ++
 tests/loggammacenslmrob.oneTML.R |    1 +
 tests/loggammacenslmrob.oneWL.R  |    2 ++
 7 files changed, 18 insertions(+), 9 deletions(-)

More information about robustloggamma at CRAN
Permanent link

Package rms updated to version 5.1-3.1 with previous version 5.1-3 dated 2019-01-27

Title: Regression Modeling Strategies
Description: Regression modeling, testing, estimation, validation, graphics, prediction, and typesetting by storing enhanced model design attributes in the fit. 'rms' is a collection of functions that assist with and streamline modeling. It also contains functions for binary and ordinal logistic regression models, ordinal models for continuous Y with a variety of distribution families, and the Buckley-James multiple regression model for right-censored responses, and implements penalized maximum likelihood estimation for logistic and ordinary linear models. 'rms' works with almost any regression model, but it was especially written to work with binary or ordinal regression models, Cox regression, accelerated failure time models, ordinary linear models, the Buckley-James model, generalized least squares for serially or spatially correlated observations, generalized linear models, and quantile regression.
Author: Frank E Harrell Jr <f.harrell@vanderbilt.edu>
Maintainer: Frank E Harrell Jr <f.harrell@vanderbilt.edu>

Diff between rms versions 5.1-3 dated 2019-01-27 and 5.1-3.1 dated 2019-04-22

 DESCRIPTION     |    6 +++---
 MD5             |    8 ++++----
 man/Function.Rd |    1 +
 man/bj.Rd       |    1 +
 man/sensuc.Rd   |    4 ++--
 5 files changed, 11 insertions(+), 9 deletions(-)

More information about rms at CRAN
Permanent link

Package pamr updated to version 1.56.1 with previous version 1.56 dated 2019-02-01

Title: Pam: Prediction Analysis for Microarrays
Description: Some functions for sample classification in microarrays.
Author: T. Hastie, R. Tibshirani, Balasubramanian Narasimhan, Gil Chu
Maintainer: Rob Tibshirani <tibs@stanford.edu>

Diff between pamr versions 1.56 dated 2019-02-01 and 1.56.1 dated 2019-04-22

 DESCRIPTION               |    6 +++---
 MD5                       |   38 +++++++++++++++++++-------------------
 man/pamr.adaptthresh.Rd   |    1 +
 man/pamr.batchadjust.Rd   |    1 +
 man/pamr.confusion.Rd     |    1 +
 man/pamr.cv.Rd            |    1 +
 man/pamr.decorrelate.Rd   |    1 +
 man/pamr.fdr.Rd           |    1 +
 man/pamr.geneplot.Rd      |    1 +
 man/pamr.indeterminate.Rd |    1 +
 man/pamr.listgenes.Rd     |    1 +
 man/pamr.makeclasses.Rd   |    1 +
 man/pamr.menu.Rd          |    1 +
 man/pamr.plotcen.Rd       |    1 +
 man/pamr.plotcv.Rd        |    1 +
 man/pamr.plotcvprob.Rd    |    1 +
 man/pamr.plotfdr.Rd       |    1 +
 man/pamr.predict.Rd       |    1 +
 man/pamr.predictmany.Rd   |    1 +
 man/pamr.train.Rd         |    1 +
 20 files changed, 40 insertions(+), 22 deletions(-)

More information about pamr at CRAN
Permanent link

Package LCA updated to version 0.1.1 with previous version 0.1 dated 2013-09-30

Title: Localised Co-Dependency Analysis
Description: Performs model fitting and significance estimation for Localised Co-Dependency between pairs of features of a numeric dataset.
Author: Ed Curry [aut, cre]
Maintainer: Ed Curry <e.curry@imperial.ac.uk>

Diff between LCA versions 0.1 dated 2013-09-30 and 0.1.1 dated 2019-04-22

 DESCRIPTION |   12 ++++++------
 MD5         |    6 +++---
 NAMESPACE   |   10 +++-------
 man/LCA.Rd  |    1 +
 4 files changed, 13 insertions(+), 16 deletions(-)

More information about LCA at CRAN
Permanent link

Package jmv updated to version 0.9.6.1 with previous version 0.9.6 dated 2018-12-11

Title: The 'jamovi' Analyses
Description: A suite of common statistical methods such as descriptives, t-tests, ANOVAs, regression, correlation matrices, proportion tests, contingency tables, and factor analysis. This package is also useable from the 'jamovi' statistical spreadsheet (see <https://www.jamovi.org> for more information).
Author: Ravi Selker, Jonathon Love, Damian Dropmann
Maintainer: Jonathon Love <jon@thon.cc>

Diff between jmv versions 0.9.6 dated 2018-12-11 and 0.9.6.1 dated 2019-04-22

 DESCRIPTION              |    6 
 MD5                      |    8 
 build/vignette.rds       |binary
 inst/doc/new-syntax.html |  509 +++++++++++++++++++++++++++--------------------
 tests/testthat.R         |    2 
 5 files changed, 309 insertions(+), 216 deletions(-)

More information about jmv at CRAN
Permanent link

Package infer updated to version 0.4.0.1 with previous version 0.4.0 dated 2018-11-15

Title: Tidy Statistical Inference
Description: The objective of this package is to perform inference using an expressive statistical grammar that coheres with the tidy design framework.
Author: Andrew Bray [aut, cre], Chester Ismay [aut], Ben Baumer [aut], Mine Cetinkaya-Rundel [aut], Evgeni Chasnovski [ctb], Ted Laderas [ctb], Nick Solomon [ctb], Johanna Hardin [ctb], Albert Y. Kim [ctb], Neal Fultz [ctb], Doug Friedman [ctb], Richie Cotton [ctb], Brian Fannin [ctb]
Maintainer: Andrew Bray <abray@reed.edu>

Diff between infer versions 0.4.0 dated 2018-11-15 and 0.4.0.1 dated 2019-04-22

 DESCRIPTION      |    6 +++---
 MD5              |    4 ++--
 tests/testthat.R |    1 +
 3 files changed, 6 insertions(+), 5 deletions(-)

More information about infer at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.