Sun, 01 May 2016

Package RWeather (with last version 0.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-09-27 0.4
2012-09-13 0.3-1
2011-11-25 0.3

Permanent link
Package unfoldr updated to version 0.5 with previous version 0.3 dated 2015-07-07

Title: Stereological Unfolding for Spheroidal Particles
Description: Stereological unfolding as implemented in this package consists in the estimation of the joint size-shape-orientation distribution of spheroidal shaped particles based on the same measured quantities of corresponding planar section profiles. A single trivariate discretized version of the (stereological) integral equation in the case of prolate and oblate spheroids is solved numerically by the EM algorithm. The estimation of diameter distribution of spheres from planar sections (Wicksell's corpuscle problem) is also implemented. Further, the package provides routines for the simulation of a Poisson germ- grain process with either spheroids or spheres as grains together with functions for planar sections. For the purpose of exact simulation a bivariate size-shape distribution is implemented.
Author: Markus Baaske [aut, cre], Felix Ballani [ctb]
Maintainer: Markus Baaske <markus.baaske@math.tu-freiberg.de>

Diff between unfoldr versions 0.3 dated 2015-07-07 and 0.5 dated 2016-05-01

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More information about unfoldr at CRAN
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Package sensitivity updated to version 1.12 with previous version 1.11.1 dated 2015-06-12

Title: Global Sensitivity Analysis of Model Outputs
Description: A collection of functions for factor screening, global sensitivity analysis and reliability sensitivity analysis. Most of the functions have to be applied on model with scalar output, but several functions support multi-dimensional outputs.
Author: Gilles Pujol, Bertrand Iooss, Alexandre Janon with contributions from Khalid Boumhaout, Sebastien Da Veiga, Jana Fruth, Laurent Gilquin, Joseph Guillaume, Loic Le Gratiet, Paul Lemaitre, Bernardo Ramos, Taieb Touati, Frank Weber
Maintainer: Bertrand Iooss <biooss@yahoo.fr>

Diff between sensitivity versions 1.11.1 dated 2015-06-12 and 1.12 dated 2016-05-01

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More information about sensitivity at CRAN
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Package rio updated to version 0.4.0 with previous version 0.3.0 dated 2016-01-14

Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that the user is probably willing to make: 'import()' and 'export()' determine the data structure from the file extension, reasonable defaults are used for data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is natively supported (including from SSL/HTTPS), compressed files can be read directly without explicit decompression, and fast import packages are used where appropriate.
Author: Jason Becker [ctb], Chung-hong Chan [aut], Geoffrey CH Chan [ctb], Thomas J. Leeper [aut, cre], Christopher Gandrud [ctb], Andrew MacDonald [ctb], Ista Zahn [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>

Diff between rio versions 0.3.0 dated 2016-01-14 and 0.4.0 dated 2016-05-01

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More information about rio at CRAN
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Package opencpu updated to version 1.5.6 with previous version 1.5.4 dated 2016-03-08

Title: Embedded Scientific Computing and Reproducible Research with R
Description: The OpenCPU system exposes an http API for embedded scientific computing with R. The server can run either as a single-user development server within the interactive R session, or as a multi-user linux stack based on rApache and NGINX. The current R package implements the core of the system. When loaded in R, it automatically initiates the single-user server and displays the web address in the console. The OpenCPU website has more detailed API documentation.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

Diff between opencpu versions 1.5.4 dated 2016-03-08 and 1.5.6 dated 2016-05-01

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Package MLmetrics updated to version 1.1.0 with previous version 1.0.0 dated 2015-05-02

Title: Machine Learning Evaluation Metrics
Description: A collection of evaluation metrics, including loss, score and utility functions, that measure regression, classification and ranking performance.
Author: Yachen Yan [aut, cre]
Maintainer: Yachen Yan <yanyachen21@gmail.com>

Diff between MLmetrics versions 1.0.0 dated 2015-05-02 and 1.1.0 dated 2016-05-01

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New package lvplot with initial version 0.2.0
Package: lvplot
Version: 0.2.0
Title: Letter Value 'Boxplots'
Description: Implements the letter value 'boxplot' which extends the standard 'boxplot' to deal with both larger and smaller number of data points by dynamically selecting the appropriate number of letter values to display.
Authors@R: c( person("Hadley", "Wickham", , "hadley@rstudio.com", c("aut", "cre")), person("Heike", "Hofmann", , "hofmann@iastate.edu", "aut") )
License: GPL (>= 2)
Depends: R (>= 2.14)
Imports: ggplot2 (>= 2.0.0), grid, RColorBrewer
Suggests: depth
RoxygenNote: 5.0.1
LazyData: true
LazyDataCompression: xz
NeedsCompilation: no
Packaged: 2016-05-01 16:20:54 UTC; hadley
Author: Hadley Wickham [aut, cre], Heike Hofmann [aut]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Repository: CRAN
Date/Publication: 2016-05-01 18:56:01

More information about lvplot at CRAN
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New package ljr with initial version 1.4-0
Package: ljr
Version: 1.4-0
Date: 2016-4-30
Title: Logistic Joinpoint Regression
Author: Michal Czajkowski, Ryan Gill, Greg Rempala
Maintainer: Ryan Gill <ryan.gill@louisville.edu>
Description: Fits and tests logistic joinpoint models.
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2016-05-01 00:09:41 UTC; vbrutac
Repository: CRAN
Date/Publication: 2016-05-01 18:55:59

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Package HelpersMG updated to version 1.5 with previous version 1.4 dated 2016-01-08

Title: Tools for Earth Meteorological Analysis
Description: Contains many functions useful for managing 'NetCDF' files (see http://en.wikipedia.org/wiki/NetCDF), get tide levels on any point of the globe, get moon phase and time for sun rise and fall, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>

Diff between HelpersMG versions 1.4 dated 2016-01-08 and 1.5 dated 2016-05-01

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Package biwavelet updated to version 0.19.1 with previous version 0.17.10 dated 2015-05-05

Title: Conduct Univariate and Bivariate Wavelet Analyses
Description: This is a port of the WTC MATLAB package written by Aslak Grinsted and the wavelet program written by Christopher Torrence and Gibert P. Compo. This package can be used to perform univariate and bivariate (cross-wavelet, wavelet coherence, wavelet clustering) analyses.
Author: Tarik C. Gouhier, Aslak Grinsted, Viliam Simko
Maintainer: Tarik C. Gouhier <tarik.gouhier@gmail.com>

Diff between biwavelet versions 0.17.10 dated 2015-05-05 and 0.19.1 dated 2016-05-01

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More information about biwavelet at CRAN
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Package clusterSEs updated to version 2.2 with previous version 2.1 dated 2015-08-05

Title: Calculate Cluster-Robust p-Values and Confidence Intervals
Description: Calculate p-values and confidence intervals using cluster-adjusted t-statistics (based on Ibragimov and Muller 2010, Journal of Business and Economic Statistics 28(4)), pairs cluster bootstrapped t-statistics, and wild cluster bootstrapped t-statistics (the latter two techniques based on Cameron, Gelbach, and Miller 2008, Review of Economics and Statistics 90(3)). Procedures are included for use with GLM, ivreg, plm (pooling or fixed effects), and mlogit models.
Author: Justin Esarey [aut, cre]
Maintainer: Justin Esarey <justin@justinesarey.com>

Diff between clusterSEs versions 2.1 dated 2015-08-05 and 2.2 dated 2016-05-01

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Sat, 30 Apr 2016

New package tcgsaseq with initial version 1.0.0
Package: tcgsaseq
Type: Package
Title: Time-Course Gene Set Analysis for RNA-Seq Data
Version: 1.0.0
Date: 2016-04-30
Authors@R: c(person("Denis", "Agniel", role = c("aut"), email = "denis.agniel@gmail.com"), person("Boris P.", "Hejblum", role = c("aut", "cre"), email = "bhejblum@hsph.harvard.edu"))
Depends: R (>= 3.0.2)
Imports: CompQuadForm, ggplot2, GSA, stats, utils
Suggests: limma
Description: Gene set analysis of longitudinal RNA-seq data with variance component score test accounting for data heteroscedasticity through precision weights.
LazyData: true
License: GPL-2 | file LICENSE
BugReports: https://github.com/denisagniel/tcgsaseq/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-30 15:25:26 UTC; borishejblum
Author: Denis Agniel [aut], Boris P. Hejblum [aut, cre]
Maintainer: Boris P. Hejblum <bhejblum@hsph.harvard.edu>
Repository: CRAN
Date/Publication: 2016-05-01 00:32:29

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Package StressStrength updated to version 1.0.2 with previous version 1.0.1 dated 2014-11-25

Title: Computation and Estimation of Reliability of Stress-Strength Models
Description: Reliability of (normal) stress-strength models and for building two-sided or one-sided confidence intervals according to different approximate procedures.
Author: Alessandro Barbiero <alessandro.barbiero@unimi.it>, Riccardo Inchingolo <dott.inchingolo_r@libero.it>
Maintainer: Alessandro Barbiero <alessandro.barbiero@unimi.it>

Diff between StressStrength versions 1.0.1 dated 2014-11-25 and 1.0.2 dated 2016-04-30

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Package rmarkdown updated to version 0.9.6 with previous version 0.9.5 dated 2016-02-22

Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut, cre], Joe Cheng [aut], Yihui Xie [aut], Jonathan McPherson [aut], Winston Chang [aut], Jeff Allen [aut], Hadley Wickham [aut], Aron Atkins [aut], Rob Hyndman [aut], RStudio, Inc. [cph], jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/rmd/h/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons)
Maintainer: JJ Allaire <jj@rstudio.com>

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Package phangorn updated to version 2.0.3 with previous version 2.0.2 dated 2016-01-22

Title: Phylogenetic Analysis in R
Description: Phylogenetic analysis in R: Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.
Author: Klaus Schliep [aut, cre], Emmanuel Paradis [aut], Alastair Potts [aut]
Maintainer: Klaus Schliep <klaus.schliep@gmail.com>

Diff between phangorn versions 2.0.2 dated 2016-01-22 and 2.0.3 dated 2016-04-30

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Package mpoly updated to version 1.0.1 with previous version 1.0.0 dated 2015-12-31

Title: Symbolic Computation and More with Multivariate Polynomials
Description: Symbolic computing with multivariate polynomials in R.
Author: David Kahle [aut, cre]
Maintainer: David Kahle <david.kahle@gmail.com>

Diff between mpoly versions 1.0.0 dated 2015-12-31 and 1.0.1 dated 2016-04-30

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New package hetmeta with initial version 0.1.0
Package: hetmeta
Type: Package
Title: Heterogeneity Measures in Meta-Analysis
Date: 2016-04-28
Version: 0.1.0
Author: Alessio Crippa
Maintainer: Alessio Crippa <alessio.crippa@ki.se>
Description: Assess the presence of statistical heterogeneity and quantify its impact in the context of meta-analysis. It includes test for heterogeneity as well as other statistical measures (R_b, I^2, R_I).
License: GPL-2
Depends: metafor
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-30 17:15:24 UTC; alecri
Repository: CRAN
Date/Publication: 2016-05-01 00:31:19

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Package DiscreteLaplace updated to version 1.1.1 with previous version 1.1 dated 2015-07-27

Title: Discrete Laplace Distributions
Description: Probability mass function, distribution function, quantile function, random generation and estimation for the skew discrete Laplace distributions.
Author: Alessandro Barbiero <alessandro.barbiero@unimi.it>, Riccardo Inchingolo <dott.inchingolo_r@libero.it>
Maintainer: Alessandro Barbiero <alessandro.barbiero@unimi.it>

Diff between DiscreteLaplace versions 1.1 dated 2015-07-27 and 1.1.1 dated 2016-04-30

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More information about DiscreteLaplace at CRAN
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Package DiscreteInverseWeibull updated to version 1.0.2 with previous version 1.0.1 dated 2014-11-25

Title: Discrete Inverse Weibull Distribution
Description: Probability mass function, distribution function, quantile function, random generation and parameter estimation for the discrete inverse Weibull distribution.
Author: Alessandro Barbiero, Riccardo Inchingolo, Mario Samigli
Maintainer: Alessandro Barbiero <alessandro.barbiero@unimi.it>

Diff between DiscreteInverseWeibull versions 1.0.1 dated 2014-11-25 and 1.0.2 dated 2016-04-30

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Package BWStest updated to version 0.2.0 with previous version 0.1.0 dated 2016-04-08

Title: Baumgartner Weiss Schindler Test of Equal Distributions
Description: Performs the 'Baumgartner-Weiss-Schindler' two-sample test of equal probability distributions.
Author: Steven E. Pav [aut, cre]
Maintainer: Steven E. Pav <shabbychef@gmail.com>

Diff between BWStest versions 0.1.0 dated 2016-04-08 and 0.2.0 dated 2016-04-30

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Package berryFunctions updated to version 1.10.0 with previous version 1.9.0 dated 2015-10-10

Title: Function Collection Related to Plotting and Hydrology
Description: Draw horizontal histograms, color scatterpoints by 3rd dimension, enhance date- and log-axis plots, zoom in X11 graphics, use the unit hydrograph in a linear storage cascade, convert lists to data.frames, fit multiple functions by regression (power, reciprocal, exponential, logarithmic, polynomial, rational).
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>

Diff between berryFunctions versions 1.9.0 dated 2015-10-10 and 1.10.0 dated 2016-04-30

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Fri, 29 Apr 2016

Package IAT updated to version 0.3 with previous version 0.2 dated 2014-07-12

Title: Cleaning and Visualizing Implicit Association Test (IAT) Data
Description: Implements the standard D-Scoring algorithm (Greenwald, Banaji, & Nosek, 2003) for Implicit Association Test (IAT) data and includes plotting capabilities for exploring raw IAT data.
Author: Dan Martin <dpmartin42@gmail.com>
Maintainer: Dan Martin <dpmartin42@gmail.com>

Diff between IAT versions 0.2 dated 2014-07-12 and 0.3 dated 2016-04-29

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Package soilDB updated to version 1.8 with previous version 1.7 dated 2016-02-16

Title: Soil Database Interface
Description: A collection of functions for reading data from USDA-NCSS soil databases.
Author: D.E. Beaudette and J. Skovlin, and S. Roecker
Maintainer: D.E. Beaudette <dylan.beaudette@ca.usda.gov>

Diff between soilDB versions 1.7 dated 2016-02-16 and 1.8 dated 2016-04-29

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Package simmer updated to version 3.2.1 with previous version 3.2.0 dated 2016-04-04

Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation (DES) package for R. Designed to be a generic framework like SimPy or SimJulia, it leverages the use of Rcpp to boost the performance and turning DES in R feasible. As a noteworthy characteristic, simmer exploits the concept of trajectory: a common path in the simulation model for entities of the same type.
Author: Bart Smeets [aut], Iñaki Ucar [aut, cre]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>

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Package quantregForest updated to version 1.3 with previous version 1.2 dated 2016-03-22

Title: Quantile Regression Forests
Description: Quantile Regression Forests is a tree-based ensemble method for estimation of conditional quantiles. It is particularly well suited for high-dimensional data. Predictor variables of mixed classes can be handled. The package is dependent on the package randomForests, written by Andy Liaw.
Author: Nicolai Meinshausen
Maintainer: Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>

Diff between quantregForest versions 1.2 dated 2016-03-22 and 1.3 dated 2016-04-29

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New package prodigenr with initial version 0.2.6
Package: prodigenr
Title: Research Project Directory Generator
Version: 0.2.6
Authors@R: person("Luke", "Johnston", , "lwjohnst@gmail.com", c("aut", "cre"))
Description: Create a project directory structure, along with typical files for that project. This allows projects to be quickly and easily created, as well as for them to be standardized. Designed specifically with scientists in mind (mainly bio-medical researchers, but likely applies to other fields).
Depends: R (>= 3.1.2)
License: MIT + file LICENSE
LazyData: true
Suggests: rmarkdown, git2r, packrat, knitr, testthat
RoxygenNote: 5.0.1
VignetteBuilder: knitr
URL: https://github.com/lwjohnst86/prodigenr
BugReports: https://github.com/lwjohnst86/prodigenr/issues
NeedsCompilation: no
Packaged: 2016-04-29 17:00:58 UTC; luke
Author: Luke Johnston [aut, cre]
Maintainer: Luke Johnston <lwjohnst@gmail.com>
Repository: CRAN
Date/Publication: 2016-04-30 00:16:00

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Package pcIRT updated to version 0.2.2 with previous version 0.2 dated 2015-07-17

Title: IRT Models for Polytomous and Continuous Item Responses
Description: Estimates the multidimensional polytomous Rasch model (Rasch, 1961) and the Continuous Rating Scale model (Mueller, 1987).
Author: Christine Hohensinn
Maintainer: Christine Hohensinn <christine.hohensinn@univie.ac.at>

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New package plac with initial version 0.1.1
Package: plac
Type: Package
Title: A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated Data
Version: 0.1.1
Date: 2016-04-29
Authors@R: person("Fan", "Wu", email = "fannwu@umich.edu", role = c("aut", "cre"))
Description: A semi-parametric estimation method for the Cox model with left-truncated data using augmented information from the marginal of truncation times.
Depends: R (>= 3.2.0), survival (>= 2.38-3)
License: GPL-3
LazyData: TRUE
Imports: Rcpp (>= 0.12.1),
URL: https://github.com/942kid/plac
BugReports: https://github.com/942kid/plac/issues
LinkingTo: Rcpp, RcppEigen
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: yes
Packaged: 2016-04-29 11:25:40 UTC; fan
Author: Fan Wu [aut, cre]
Maintainer: Fan Wu <fannwu@umich.edu>
Repository: CRAN
Date/Publication: 2016-04-30 00:15:59

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Package nycflights13 updated to version 0.2.0 with previous version 0.1 dated 2014-07-22

Title: Flights that Departed NYC in 2013
Description: Airline on-time data for all flights departing NYC in 2013. Also includes useful 'metadata' on airlines, airports, weather, and planes.
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package npregfast updated to version 1.3.0 with previous version 1.2.1 dated 2016-02-16

Title: Nonparametric Estimation of Regression Models with Factor-by-Curve Interactions
Description: A method for obtain nonparametric estimates of regression models with or without factor-by-curve interactions using local polynomial kernel smoothers or splines. Additionally, a parametric model (allometric model) can be estimated.
Author: Marta Sestelo [aut, cre], Nora M. Villanueva [aut], Javier Roca-Pardinas [aut]
Maintainer: Marta Sestelo <sestelo@uvigo.es>

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Package multiplex updated to version 1.9 with previous version 1.8.2 dated 2016-03-08

Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for the analysis of multiple social networks are delivered with this package. Among other things, it is possible to create and manipulate multivariate network data with different formats, and there are effective ways available to treat multiple networks with routines that combine algebraic systems like the partially ordered semigroup or the semiring structure together with the relational bundles occurring in different types of multivariate network data sets. As well an algebraic approach for two-mode networks is made through Galois derivations between families of the pair of subsets.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>

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Package googleformr updated to version 0.0.3 with previous version 0.0.2 dated 2016-03-26

Title: Collect Data Programmatically by POST Methods to Google Forms
Description: GET and POST data to Google Forms; an API to Google Forms, allowing users to POST data securely to Google Forms without needing authentication or permissioning.
Author: Steve Simpson [aut, cre]
Maintainer: Steve Simpson <steven.troy.simpson@gmail.com>

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Package GetTDData updated to version 1.2 with previous version 1.1 dated 2016-04-13

Title: Get Data for Brazilian Bonds (Tesouro Direto)
Description: Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <http://www.tesouro.fazenda.gov.br/tesouro-direto-balanco-e-estatisticas>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>

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Package fastclime updated to version 1.4.1 with previous version 1.4 dated 2016-04-18

Title: A Fast Solver for Parameterized LP Problems, Constrained L1 Minimization Approach to Sparse Precision Matrix Estimation and Dantzig Selector
Description: Provides a method of recovering the precision matrix efficiently and solving for the dantzig selector by applying the parametric simplex method. The computation is based on a linear optimization solver. It also contains a generic LP solver and a parameterized LP solver using parametric simplex method.
Author: Haotian Pang, Di Qi, Han Liu and Robert Vanderbei
Maintainer: Haotian Pang <hpang@princeton.edu>

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Package vtreat updated to version 0.5.23 with previous version 0.5.22 dated 2016-01-07

Title: Simple Variable Treatment
Description: Prepares variables so that data has fewer exceptional cases, making it easier to safely use models in production. Common problems 'vtreat' defends against: Inf, NA, too many categorical values, rare categorical values, new categorical values (levels seen during application, but not during training). 'vtreat::prepare' should be used as you would use 'model.matrix'.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>

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New package sparsebnUtils with initial version 0.0.1
Package: sparsebnUtils
Title: Utilities for Learning Sparse Bayesian Networks
Version: 0.0.1
Date: 2016-04-28
Authors@R: person("Bryon", "Aragam", email = "sparsebn@gmail.com", role = c("aut", "cre"))
Maintainer: Bryon Aragam <sparsebn@gmail.com>
Description: A set of tools for representing and estimating sparse Bayesian networks from continuous and discrete data.
Depends: R (>= 3.2.3)
Imports: Matrix, stats, utils
Suggests: graph, igraph, network, testthat
URL: https://github.com/itsrainingdata/sparsebnUtils
BugReports: https://github.com/itsrainingdata/sparsebnUtils/issues
License: GPL (>= 2)
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-28 19:25:10 UTC; Zigmund-2
Author: Bryon Aragam [aut, cre]
Repository: CRAN
Date/Publication: 2016-04-29 12:11:58

More information about sparsebnUtils at CRAN
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Package qgraph updated to version 1.3.3 with previous version 1.3.2 dated 2016-01-19

Title: Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation
Description: The qgraph package can be used to visualize data as networks as well as provides an interface for visualizing weighted graphical models.
Author: Sacha Epskamp, Giulio Costantini, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>

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Package mvabund updated to version 3.11.9 with previous version 3.11.7 dated 2016-03-31

Title: Statistical Methods for Analysing Multivariate Abundance Data
Description: A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See 'mvabund-package.Rd' for details of overall package organization. The package is implemented with the Gnu Scientific Library (http://www.gnu.org/software/gsl/) and Rcpp (http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Author: Yi Wang, Ulrike Naumann, Stephen Wright, Dirk Eddelbuettel and David Warton
Maintainer: David Warton <David.Warton@unsw.edu.au>

Diff between mvabund versions 3.11.7 dated 2016-03-31 and 3.11.9 dated 2016-04-29

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Package mipfp updated to version 3.0-1 with previous version 3.0 dated 2016-04-22

Title: Multidimensional Iterative Proportional Fitting and Alternative Models
Description: An implementation of the iterative proportional fitting (IPFP), maximum likelihood, minimum chi-square and weighted least squares procedures for updating a N-dimensional array with respect to given target marginal distributions (which, in turn can be multi-dimensional). The package also provides an application of the IPFP to simulate multivariate Bernoulli distributions.
Author: Johan Barthelemy [aut, cre], Thomas Suesse [aut], Mohammad Namazi-Rad [ctb]
Maintainer: Johan Barthelemy <johan@uow.edu.au>

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Package evaluate updated to version 0.9 with previous version 0.8.3 dated 2016-03-04

Title: Parsing and Evaluation Tools that Provide More Details than the Default
Description: Parsing and evaluation tools that make it easy to recreate the command line behaviour of R.
Author: Hadley Wickham [aut], Yihui Xie [cre, ctb], Michael Lawrence [ctb], Thomas Kluyver [ctb], Barret Schloerke [ctb]
Maintainer: Yihui Xie <xie@yihui.name>

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Package daff updated to version 0.2.0 with previous version 0.1.4 dated 2015-04-18

Title: Diff, Patch and Merge for Data.frames
Description: Diff, patch and merge for data frames. Document changes in data sets and use them to apply patches. Changes to data can be made visible by using render_diff. The V8 package is used to wrap the 'daff.js' JavaScript library which is included in the package.
Author: Paul Fitzpatrick [aut] (JavaScript original, http://paulfitz.github.io/daff/), Edwin de Jonge [aut, cre] (R wrapper)
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>

Diff between daff versions 0.1.4 dated 2015-04-18 and 0.2.0 dated 2016-04-29

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Package convoSPAT updated to version 1.1 with previous version 1.0 dated 2015-09-28

Title: Convolution-Based Nonstationary Spatial Modeling
Description: Fits convolution-based nonstationary Gaussian process models to point-referenced spatial data. The nonstationary covariance function allows the user to specify the underlying correlation structure and which spatial dependence parameters should be allowed to vary over space: the anisotropy, nugget variance, and process variance. The parameters are estimated via maximum likelihood, using a local likelihood approach. Also provided are functions to fit stationary spatial models for comparison, calculate the kriging predictor and standard errors, and create various plots to visualize nonstationarity.
Author: Mark D. Risser [aut, cre]
Maintainer: Mark D. Risser <markdrisser@gmail.com>

Diff between convoSPAT versions 1.0 dated 2015-09-28 and 1.1 dated 2016-04-29

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Package UBL updated to version 0.0.4 with previous version 0.0.3 dated 2016-04-25

Title: An Implementation of Several Approaches to Utility-Based Learning for Both Classification and Regression Tasks
Description: Provides a set of functions that can be used to obtain better predictive performance on cost-sensitive and cost/benefits tasks (for both regression and classification). This includes re-sampling approaches, cost-based methods, special purpose evaluation metrics as well as specific learning systems.
Author: Paula Branco [aut, cre], Rita Ribeiro [aut, ctb], Luis Torgo [aut, ctb]
Maintainer: Paula Branco <paobranco@gmail.com>

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Package twang updated to version 1.4-9.5 with previous version 1.4-9.3 dated 2015-02-02

Title: Toolkit for Weighting and Analysis of Nonequivalent Groups
Description: Provides functions for propensity score estimating and weighting, nonresponse weighting, and diagnosis of the weights. This package was originally developed by Drs. Ridgeway, McCaffrey, and Morral. Burgette, Griffin and McCaffrey updated the package during 2011-2016.
Author: Greg Ridgeway, Dan McCaffrey, Andrew Morral, Beth Ann Griffin, Lane Burgette <burgette@rand.org>
Maintainer: Lane Burgette <burgette@rand.org>

Diff between twang versions 1.4-9.3 dated 2015-02-02 and 1.4-9.5 dated 2016-04-29

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Package rvg updated to version 0.0.9 with previous version 0.0.8 dated 2016-03-04

Title: R Graphics Devices for Vector Graphics Output
Description: Vector Graphics devices for 'SVG', 'DrawingML' for Microsoft Word, PowerPoint and Excel.
Author: David Gohel [aut, cre], Bob Rudis [ctb] (the javascript code used by function set_attr), Francois Brunetti [ctb] (clipping algorithms)
Maintainer: David Gohel <david.gohel@ardata.fr>

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Package remoter updated to version 0.3-2 with previous version 0.2-0 dated 2016-02-04

Title: Remote R: Control a Remote R Session from a Local One
Description: A set of utilities for controlling a remote R session from a local one. Simply set up a server (see package vignette for more details) and connect to it from your local R session, including 'RStudio'. Network communication is handled by the 'ZeroMQ' library by way of the 'pbdZMQ' package. The client/server framework is a custom 'REPL'.
Author: Drew Schmidt [aut, cre], Wei-Chen Chen [aut]
Maintainer: Drew Schmidt <wrathematics@gmail.com>

Diff between remoter versions 0.2-0 dated 2016-02-04 and 0.3-2 dated 2016-04-29

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New package irtDemo with initial version 0.1.0
Package: irtDemo
Type: Package
Title: Item Response Theory Demo Collection
Version: 0.1.0
Date: 2016-04-27
Author: Metin Bulus [aut,cre]
Maintainer: Metin Bulus <bulusmetin@gmail.com>
Description: Includes a collection of shiny applications to demonstrate or to explore fundamental item response theory (IRT) concepts such as estimation, scoring, and multidimensional IRT models.
Imports: shiny (>= 0.13.2), shinydashboard (>= 0.5.1), fGarch (>= 3010.82)
Depends: R (>= 3.2.4)
License: GPL (>= 2)
LazyData: TRUE
NeedsCompilation: no
Packaged: 2016-04-28 13:18:30 UTC; METIN
Repository: CRAN
Date/Publication: 2016-04-29 07:31:38

More information about irtDemo at CRAN
Permanent link

Package fmrs updated to version 1.0-7 with previous version 1.0-5 dated 2016-03-27

Title: Variable Selection in Finite Mixture of AFT Regression and FMR
Description: Provides parameter estimation as well as variable selection in Finite Mixture of Accelerated Failure Time Regression and Finite Mixture of Regression Models. Furthermore, this package provides Ridge Regression and Elastic Net.
Author: Farhad Shokoohi <shokoohi@icloud.com> Abbas Khalili Masoud Asgharian Shili Lin
Maintainer: Farhad Shokoohi <shokoohi@icloud.com>

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New package ClusteredMutations with initial version 1.0.1
Package: ClusteredMutations
Version: 1.0.1
Date: 2016-04-28
Title: Location and Visualization of Clustered Somatic Mutations
Authors@R: person("David", "Lora", email = "david@h12o.es", role = c("aut", "cre"))
Depends: seriation
Description: Identification and visualization of groups of closely spaced mutations in the DNA sequence of cancer genome. The extremely mutated zones are searched in the symmetric dissimilarity matrix using the anti-Robinson matrix properties. Different data sets are obtained to describe and plot the clustered mutations information.
License: GPL-3
Packaged: 2016-04-28 15:54:35 UTC; david
Author: David Lora [aut, cre]
Maintainer: David Lora <david@h12o.es>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-04-29 07:44:36

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Thu, 28 Apr 2016

Package MDplot updated to version 0.3.1 with previous version 0.3 dated 2016-02-18

Title: Visualising Molecular Dynamics Analyses
Description: Provides automatization for plot generation succeeding common molecular dynamics analyses. This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as dihedral angle maps, hydrogen bonds, cluster bar plots and DSSP (Definition of Secondary Structure of Proteins) analysis.
Author: Christian Margreitter [aut, cre]
Maintainer: Christian Margreitter <christian.margreitter@gmail.com>

Diff between MDplot versions 0.3 dated 2016-02-18 and 0.3.1 dated 2016-04-28

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Package glmmLasso updated to version 1.4.3 with previous version 1.4.1 dated 2016-03-01

Title: Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation
Description: A variable selection approach for generalized linear mixed models by L1-penalized estimation is provided.
Author: Andreas Groll
Maintainer: Andreas Groll <groll@mathematik.uni-muenchen.de>

Diff between glmmLasso versions 1.4.1 dated 2016-03-01 and 1.4.3 dated 2016-04-28

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Package fda.usc updated to version 1.2.3 with previous version 1.2.2 dated 2015-12-10

Title: Functional Data Analysis and Utilities for Statistical Computing
Description: Routines for exploratory and descriptive analysis of functional data such as depth measurements, atypical curves detection, regression models, supervised classification, unsupervised classification and functional analysis of variance.
Author: Manuel Febrero Bande [aut], Manuel Oviedo de la Fuente [aut, cre], Pedro Galeano [ctb], Alicia Nieto [ctb], Eduardo Garcia-Portugues [ctb]
Maintainer: Manuel Oviedo de la Fuente <manuel.oviedo@usc.es>

Diff between fda.usc versions 1.2.2 dated 2015-12-10 and 1.2.3 dated 2016-04-28

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New package CalibrateSSB with initial version 1.0
Package: CalibrateSSB
Type: Package
Title: Weighting and Estimation for Panel Data with Non-Response
Version: 1.0
Date: 2016-04-28
Author: Oyvind Langsrud
Maintainer: Oyvind Langsrud <oyl@ssb.no>
Depends: R (>= 3.0.0), survey
Description: Function to calculate weights and estimates for panel data with non-response.
License: GPL-2
NeedsCompilation: no
Packaged: 2016-04-28 10:45:59 UTC; oyl
Repository: CRAN
Date/Publication: 2016-04-28 15:55:19

More information about CalibrateSSB at CRAN
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New package tidytext with initial version 0.1.0
Package: tidytext
Type: Package
Title: Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools
Version: 0.1.0
Date: 2016-04-27
Authors@R: c(person("Gabriela", "De Queiroz", email = "gabidequeiroz@gmail.com", role = c("ctb")), person("David", "Robinson", email = "admiral.david@gmail.com", role = c("aut")), person("Julia", "Silge", email = "julia.silge@gmail.com", role = c("aut", "cre")))
Description: Text mining for word processing and sentiment analysis using 'dplyr', 'ggplot2', and other tidy tools.
License: MIT + file LICENSE
LazyData: TRUE
URL: http://github.com/juliasilge/tidytext
BugReports: http://github.com/juliasilge/tidytext/issues
RoxygenNote: 5.0.1
Depends: R (>= 2.10)
Imports: dplyr, stringr, tidyr, plyr, broom, Matrix, tokenizers, janeaustenr, purrr, methods
Suggests: readr, XML, tm, wordcloud, knitr, rmarkdown, ggplot2, reshape2, topicmodels, quanteda, NLP, scales, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-04-28 00:32:40 UTC; juliasilge
Author: Gabriela De Queiroz [ctb], David Robinson [aut], Julia Silge [aut, cre]
Maintainer: Julia Silge <julia.silge@gmail.com>
Repository: CRAN
Date/Publication: 2016-04-28 11:50:08

More information about tidytext at CRAN
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Package parsec updated to version 1.1.1 with previous version 1.1 dated 2015-06-22

Title: Partial Orders in Socio-Economics
Description: Implements basic partial order tools for multidimensional poverty evaluation with ordinal variables. Its main goal is to provide socio-economic scholars with an integrated set of elementary functions for multidimensional poverty evaluation, based on ordinal information. The package is organized in four main parts. The first two comprise functions for data management and basic partial order analysis; the third and the fourth are devoted to evaluation and implement both the poset-based approach and a more classical counting procedure.
Author: Alberto Arcagni [aut, cre], Marco Fattore [ctb]
Maintainer: Alberto Arcagni <alberto.arcagni@unimib.it>

Diff between parsec versions 1.1 dated 2015-06-22 and 1.1.1 dated 2016-04-28

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Package imager updated to version 0.20 with previous version 0.15 dated 2016-01-07

Title: Image Processing Library Based on CImg
Description: Fast image processing for images in up to 4 dimensions (two spatial dimensions, one time/depth dimension, one colour dimension). Provides most traditional image processing tools (filtering, morphology, transformations, etc.) as well as various functions for easily analysing image data using R.
Author: Simon Barthelme [aut, cre], Antoine Cecchi [ctb]
Maintainer: Simon Barthelme <simon.barthelme@gipsa-lab.fr>

Diff between imager versions 0.15 dated 2016-01-07 and 0.20 dated 2016-04-28

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Package IBDsim updated to version 0.9-6 with previous version 0.9-5 dated 2015-07-03

Title: Simulation of Chromosomal Regions Shared by Family Members
Description: R package for simulation of IBD sharing among family members. Using sex specific recombination rates from the Decode map (2010) of the human genome, phased chromosomes are simulated for all pedigree members, either by unconditional 'gene dropping' or conditional on a specified IBD pattern. Regions compatible with the query IBD pattern (possibly different from the conditional pattern) are subsequently detected and summarized.
Author: Magnus Dehli Vigeland
Maintainer: Magnus Dehli Vigeland <magnusdv@studmed.uio.no>

Diff between IBDsim versions 0.9-5 dated 2015-07-03 and 0.9-6 dated 2016-04-28

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Package HiCfeat updated to version 1.1 with previous version 1.0 dated 2015-10-05

Title: Multiple Logistic Regression for 3D Chromatin Domain Border Analysis
Description: We propose a multiple logistic regression model to assess the influences of genomic features such as DNA-binding proteins and functional elements on topological domain borders.
Author: Raphael Mourad
Maintainer: Raphael Mourad <raphael.mourad@ibcg.biotoul.fr>

Diff between HiCfeat versions 1.0 dated 2015-10-05 and 1.1 dated 2016-04-28

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Package GFD updated to version 0.2.2 with previous version 0.1.4 dated 2016-01-14

Title: Tests for General Factorial Designs
Description: Implemented are the Wald-type statistic, a permuted version thereof as well as the ANOVA-type statistic for general factorial designs, even with non-normal error terms and/or heteroscedastic variances, for crossed designs with an arbitrary number of factors and nested designs with up to three factors.
Author: Sarah Friedrich, Frank Konietschke, Markus Pauly
Maintainer: Sarah Friedrich <sarah.friedrich@uni-ulm.de>

Diff between GFD versions 0.1.4 dated 2016-01-14 and 0.2.2 dated 2016-04-28

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New package EpiWeek with initial version 1.1
Package: EpiWeek
Type: Package
Title: Conversion Between Epidemiological Weeks and Calendar Dates
Version: 1.1
Date: 2016-04-28
Author: Xiahong Zhao
Maintainer: Xiahong Zhao <zxiahong@gmail.com>
Description: Users can easily derive the calendar dates from epidemiological weeks, and vice versa.
License: GPL-2
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-28 01:38:50 UTC; ephzhao
Repository: CRAN
Date/Publication: 2016-04-28 11:50:00

More information about EpiWeek at CRAN
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New package ClusterRankTest with initial version 1.0
Package: ClusterRankTest
Type: Package
Title: Rank Tests for Clustered Data
Version: 1.0
Date: 2016-04-21
Author: Sandipan Dutta, Somnath Datta
Maintainer: Sandipan Dutta <sandipan.dutta07@gmail.com>
Description: Nonparametric rank based tests (rank-sum tests and signed-rank tests) for clustered data, especially useful for clusters having informative cluster size and intra-cluster group size.
License: GPL-2 | GPL-3
Depends: graphics, stats, utils
Packaged: 2016-04-27 05:43:24 UTC; sandy
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-04-28 11:49:57

More information about ClusterRankTest at CRAN
Permanent link

Wed, 27 Apr 2016

Package syuzhet updated to version 1.0.0 with previous version 0.2.0 dated 2015-02-21

Title: Extracts Sentiment and Sentiment-Derived Plot Arcs from Text
Description: Extracts sentiment and sentiment-derived plot arcs from text using three sentiment dictionaries conveniently packaged for consumption by R users. Implemented dictionaries include "syuzhet" (default) developed in the Nebraska Literary Lab "afinn" developed by Finn {\AA}rup Nielsen, "bing" developed by Minqing Hu and Bing Liu, and "nrc" developed by Mohammad, Saif M. and Turney, Peter D. Applicable references are available in README.md and in the documentation for the "get_sentiment" function. The package also provides a hack for implementing Stanford's coreNLP sentiment parser. The package provides several methods for plot arc normalization.
Author: Matthew Jockers [aut, cre]
Maintainer: Matthew Jockers <mjockers@gmail.com>

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Package robotstxt updated to version 0.3.2 with previous version 0.1.2 dated 2016-02-08

Title: A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler' Permissions Checker
Description: Provides functions to download and parse 'robots.txt' files. Ultimately the package makes it easy to check if bots (spiders, scrapers, ...) are allowed to access specific resources on a domain.
Author: Peter Meissner [aut, cre], Oliver Keys [ctb], Rich Fitz John [ctb]
Maintainer: Peter Meissner <retep.meissner@gmail.com>

Diff between robotstxt versions 0.1.2 dated 2016-02-08 and 0.3.2 dated 2016-04-27

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Package paramlink updated to version 0.9-8 with previous version 0.9-7 dated 2015-07-03

Title: Parametric Linkage Analysis in R
Description: Parametric linkage analysis and other likelihood-based pedigree analyses based on the Elston-Stewart algorithm, including singlepoint LOD scores, power analysis and computation of marker genotype distributions. Multipoint analysis is provided through a convenient MERLIN wrapper. Includes many utility functions for creating, manipulating and plotting pedigrees, markers and linkage results.
Author: Magnus Dehli Vigeland
Maintainer: Magnus Dehli Vigeland <magnusdv@studmed.uio.no>

Diff between paramlink versions 0.9-7 dated 2015-07-03 and 0.9-8 dated 2016-04-27

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New package ParallelTree with initial version 0.1.0
Package: ParallelTree
Type: Package
Title: Parallel Tree
Version: 0.1.0
Author: Patrick O'Keefe
Maintainer: Patrick O'Keefe <patrick.okeefe@vanderbilt.edu>
Description: Provides two functions: Group_function() and Parallel_Tree(). Group_function() applies a given function (e.g.,mean()) to input variable(s) by group across levels. Has additional data management options. Parallel_Tree() uses 'ggplot2' to create a parallel coordinate plots (technically a facsimile of parallel coordinate plots in a Cartesian coordinate system). Used in combination these functions can create parallel tree plots, a variant of parallel coordinate plots, which are useful for visualizing multilevel data.
Depends: ggplot2
Imports: stats
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-27 19:09:06 UTC; Patrick
Repository: CRAN
Date/Publication: 2016-04-28 00:27:46

More information about ParallelTree at CRAN
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Package midrangeMCP updated to version 1.2 with previous version 1.1 dated 2016-02-21

Title: Multiple Comparisons Procedures Based on Studentized Midrange and Range Distributions
Description: Apply tests of multiple comparisons based on studentized midrange and range distributions. The tests are: Tukey Midrange test, Student-Newman- Keuls Midrange test, Skott-Knott Midrange test and Skott-Knott Range test.
Author: Ben Deivide [aut, cre], Daniel Furtado [aut]
Maintainer: Ben Deivide <ben.deivide@gmail.com>

Diff between midrangeMCP versions 1.1 dated 2016-02-21 and 1.2 dated 2016-04-27

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Package ismev updated to version 1.41 with previous version 1.40 dated 2014-12-24

Title: An Introduction to Statistical Modeling of Extreme Values
Description: Functions to support the computations carried out in `An Introduction to Statistical Modeling of Extreme Values' by Stuart Coles. The functions may be divided into the following groups; maxima/minima, order statistics, peaks over thresholds and point processes.
Author: Original S functions written by Janet E. Heffernan with R port and R documentation provided by Alec G. Stephenson.
Maintainer: Eric Gilleland <ericg@ucar.edu>

Diff between ismev versions 1.40 dated 2014-12-24 and 1.41 dated 2016-04-27

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Package imputeTS updated to version 1.5 with previous version 0.4 dated 2015-12-04

Title: Time Series Missing Value Imputation
Description: Imputation (replacement) of missing values in univariate time series.
Author: Steffen Moritz
Maintainer: Steffen Moritz <steffen.moritz10@gmail.com>

Diff between imputeTS versions 0.4 dated 2015-12-04 and 1.5 dated 2016-04-27

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Package gcerisk updated to version 16.1.3 with previous version 16.1.2 dated 2016-03-04

Title: Generalized Competing Event Model
Description: Generalized competing event model based on Cox PH model and Fine-Gray model. This function is designed to develop optimized risk-stratification methods for competing risks data, such as described in: 1. Carmona R, Gulaya S, Murphy JD, Rose BS, Wu J, Noticewala S,McHale MT, Yashar CM, Vaida F, and Mell LK.(2014) <DOI:10.1016/j.ijrobp.2014.03.047>. Validated competing event model for thestage I-II endometrial cancer population. Int J Radiat Oncol Biol Phys.89:888-98. 2. Carmona R, Zakeri K, Green G, Hwang L, Gulaya S, Xu B, Verma R, Williamson CW, Triplett DP, Rose BS, Shen H, Vaida F, Murphy JD, and Mell LK.(2016) <DOI:10.1200/JCO.2015.65.0739>. Improved method to stratify elderly cancer patients at risk for competing events. J Clin Oncol.in press.
Author: Hanjie Shen <has072@ucsd.edu>, Ruben Carmona <ruben.carmona13@gmail.com>, Loren Mell <lmell@ucsd.edu>
Maintainer: Hanjie Shen <shenhanjie0418@gmail.com>

Diff between gcerisk versions 16.1.2 dated 2016-03-04 and 16.1.3 dated 2016-04-27

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Package funtimes updated to version 2.2 with previous version 2.1 dated 2016-01-16

Title: Functions for Time Series Analysis
Description: Includes non-parametric estimators and tests for time series analysis. The functions are to test for presence of possibly non-monotonic trends and for synchronism of trends in multiple time series, using modern bootstrap techniques and robust non-parametric difference-based estimators.
Author: Vyacheslav Lyubchich; Yulia R. Gel; Xingyu Wang; Calvin Chu
Maintainer: Vyacheslav Lyubchich <lyubchic@umces.edu>

Diff between funtimes versions 2.1 dated 2016-01-16 and 2.2 dated 2016-04-27

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New package ShapePattern with initial version 1.0
Package: ShapePattern
Type: Package
Title: Tools for Analyzing Planar Shape and Associated Patterns
Version: 1.0
Date: 2016-04-25
Author: Tarmo K. Remmel
Maintainer: Tarmo K. Remmel <remmelt@yorku.ca>
Description: An evolving and growing collection of tools for the quantification, assessment, and comparison of planar shape and pattern. The current flagship functionality is in the spatial decomposition of planar shapes using 'ShrinkShape' to incrementally shrink shapes to extinction while computing area, perimeter, and number of parts at each iteration of shrinking. The spectra of results are returned in graphic and tabular formats. Additional utility tools for handling data are provided and this package will be added to as more tools are created, cleaned-up, and documented.
License: GPL-2
LazyData: yes
LazyDataCompression: xz
Depends: R (>= 2.14), rgdal, sp, rgeos
NeedsCompilation: no
Packaged: 2016-04-27 17:02:29 UTC; remmelt
Repository: CRAN
Date/Publication: 2016-04-27 19:51:54

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New package pandocfilters with initial version 0.1-1
Package: pandocfilters
Title: Pandoc Filters for R
Version: 0.1-1
Authors@R: c(person("Florian", "Schwendinger", role = c("aut", "cre"), email = "FlorianSchwendinger@gmx.at"), person("Kurt", "Hornik", role = "aut"))
Description: The document converter 'pandoc' <http://pandoc.org/> is widely used in the R community. One feature of 'pandoc' is that it can produce and consume JSON-formatted abstract syntax trees (AST). This allows to transform a given source document into JSON-formatted AST, alter it by so called filters and pass the altered JSON-formatted AST back to 'pandoc'. This package provides functions which allow to write such filters in native R code. Although this package is inspired by the Python package 'pandocfilters' <https://github.com/jgm/pandocfilters/>, it provides additional convenience functions which make it simple to use the 'pandocfilters' package as a report generator. Since 'pandocfilters' inherits most of it's functionality from 'pandoc' it can create documents in many formats (for more information see <http://pandoc.org/>) but is also bound to the same limitations as 'pandoc'.
URL: http://pandoc.org/, https://github.com/jgm/pandocfilters/
Depends: R (>= 2.15)
Imports: jsonlite, base
SystemRequirements: pandoc (> 1.12)
License: GPL-3
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-26 13:44:49 UTC; florian
Author: Florian Schwendinger [aut, cre], Kurt Hornik [aut]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Repository: CRAN
Date/Publication: 2016-04-27 19:51:55

More information about pandocfilters at CRAN
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Package multisensi updated to version 2.0 with previous version 1.0-8 dated 2015-02-17

Title: Multivariate Sensitivity Analysis
Description: Functions to perform sensitivity analysis on a model with multivariate output.
Author: Caroline Bidot <caroline.bidot@jouy.inra.fr>, Matieyendou Lamboni <clamboni@yahoo.fr>, Hervé Monod <herve.monod@jouy.inra.fr>
Maintainer: Caroline Bidot <caroline.bidot@jouy.inra.fr>

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New package NAEPprimer with initial version 1.0.1
Package: NAEPprimer
Version: 1.0.1
Date: 2016-04-04
Title: The NAEP Primer
Author: NAEP Primer data by Emmanuel Sikali. Creation of R package by Paul Bailey and Michael Lee.
Maintainer: Emmanuel Sikali <Emmanuel.Sikali@ed.gov>
Description: Contains a sample of the 2005 Grade 8 Mathematics data from the National Assessment of Educational Progress (NAEP). This data set is called the NAEP Primer.
License: GPL-2
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-07 18:10:13 UTC; mlee
Repository: CRAN
Date/Publication: 2016-04-27 19:51:52

More information about NAEPprimer at CRAN
Permanent link

Package CopyDetect updated to version 1.2 with previous version 1.1 dated 2014-06-11

Title: Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests
Description: Contains several IRT and non-IRT based statistical indices proposed in the literature for detecting answer copying on multiple-choice examinations. Includes the indices that have been shown as effective and reliable based on the simulation studies. Provides results for the Omega index, Generalized Binomial Test, K index, K1 and K2 indices, and S1 and S2 indices.
Author: Cengiz Zopluoglu
Maintainer: Cengiz Zopluoglu <c.zopluoglu@miami.edu>

Diff between CopyDetect versions 1.1 dated 2014-06-11 and 1.2 dated 2016-04-27

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Package slackr updated to version 1.4.1 with previous version 1.2 dated 2014-09-08

Title: Send Messages, Images, R Objects and Files to 'Slack' Channels/Users
Description: 'Slack' <http://slack.com/> provides a service for teams to collaborate by sharing messages, images, links, files and more. Functions are provided that make it possible to interact with the 'Slack' platform 'API'. When you need to share information or data from R, rather than resort to copy/ paste in e-mails or other services like 'Skype' <http://www.skype.com/>, you can use this package to send well-formatted output from multiple R objects and expressions to all teammates at the same time with little effort. You can also send images from the current graphics device, R objects (as RData), and upload files.
Author: Bob Rudis [aut, cre], Jay Jacobs [ctb], David Severski [ctb], Quinn Weber [ctb], Konrad Karczewski [ctb], Shinya Uryu [ctb], Gregory Jefferis [ctb], Ed Niles [ctb], Rick Saporta [ctb]
Maintainer: Bob Rudis <bob@rudis.net>

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Package SimDesign updated to version 0.9 with previous version 0.8 dated 2016-03-22

Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to help safely and efficiently organize Monte Carlo simulations in R. The package controls the structure and back-end of Monte Carlo simulations by utilizing a general generate-analyse-summarise strategy. The functions provided control common simulation issues such as re-simulating non-convergent results, support parallel back-end and MPI distributed computations, save and restore temporary files, aggregate results across independent nodes, and provide native support for debugging.
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>

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Package saeSim updated to version 0.8.0 with previous version 0.7.0 dated 2015-02-16

Title: Simulation Tools for Small Area Estimation
Description: Tools for the simulation of data in the context of small area estimation. Combine all steps of your simulation - from data generation over drawing samples to model fitting - in one object. This enables easy modification and combination of different scenarios. You can store your results in a folder or start the simulation in parallel.
Author: Sebastian Warnholz [aut, cre], Timo Schmid [aut]
Maintainer: Sebastian Warnholz <Sebastian.Warnholz@fu-berlin.de>

Diff between saeSim versions 0.7.0 dated 2015-02-16 and 0.8.0 dated 2016-04-27

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Package rfUtilities updated to version 2.0-0 with previous version 1.0-2 dated 2015-09-29

Title: Random Forests Model Selection and Performance Evaluation
Description: Utilities for Random Forest model selection, class balance correction, significance test, cross validation and partial dependency plots.
Author: Jeffrey S. Evans [cre, aut], Melanie A. Murphy [ctb]
Maintainer: Jeffrey S. Evans <jeffrey_evans@tnc.org>

Diff between rfUtilities versions 1.0-2 dated 2015-09-29 and 2.0-0 dated 2016-04-27

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New package REAT with initial version 1.0.0
Package: REAT
Type: Package
Title: Regional Economic Analysis Tools
Version: 1.0.0
Date: 2016-03-27
Author: Thomas Wieland
Maintainer: Thomas Wieland <thomas.wieland.geo@googlemail.com>
Description: Collection of analysis methods used in regional and urban economics and (quantitative) economic geography, e.g. measures of inequality, regional disparities and regional specialization.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-04-26 19:13:23 UTC; Thomas
Repository: CRAN
Date/Publication: 2016-04-27 13:30:50

More information about REAT at CRAN
Permanent link

Package RcppRedis updated to version 0.1.7 with previous version 0.1.6 dated 2015-10-05

Title: 'Rcpp' Bindings for 'Redis' using the 'hiredis' Library
Description: Connection to the 'Redis' key/value store using the C-language client library 'hiredis'. 'MsgPack' encoding is optional if the 'RcppMsgPack' package is detected. You can install via from the 'ghrr' drat repository listed below.
Author: Dirk Eddelbuettel <edd@debian.org>
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppRedis versions 0.1.6 dated 2015-10-05 and 0.1.7 dated 2016-04-27

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Package Rborist updated to version 0.1-1 with previous version 0.1-0 dated 2015-02-14

Title: Extensible, Parallelizable Implementation of the Random Forest Algorithm
Description: Scalable decision tree training and prediction.
Author: Mark Seligman
Maintainer: Mark Seligman <mseligman@suiji.org>

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Package PHENIX updated to version 1.3 with previous version 1.2.2 dated 2016-03-03

Title: Phenotypic Integration Index
Description: Provides functions to estimate the size-controlled phenotypic integration index, a novel method by Torices & Méndez (2014) to solve problems due to individual size when estimating integration (namely, larger individuals have larger components, which will drive a correlation between components only due to resource availability that might obscure the observed measures of integration). In addition, the package also provides the classical estimation by Wagner (1984), bootstrapping and jackknife methods to calculate confidence intervals and a significance test for both integration indices.
Author: R. Torices, A. J. Muñoz-Pajares
Maintainer: A. J. Muñoz-Pajares <ajesusmp@cibio.up.pt>

Diff between PHENIX versions 1.2.2 dated 2016-03-03 and 1.3 dated 2016-04-27

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Package osmplotr updated to version 0.2.0 with previous version 0.1-3 dated 2016-03-22

Title: Customisable Images of OpenStreetMap Data
Description: Produces customisable images of OpenStreetMap (OSM) data and enables data visualisation using OSM objects.
Author: Mark Padgham [aut, cre]
Maintainer: Mark Padgham <mark.padgham@email.com>

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New package NPflow with initial version 0.9.0
Package: NPflow
Type: Package
Title: Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data
Version: 0.9.0
Date: 2016-04-26
Authors@R: c(person("Boris P.", "Hejblum", role = c("aut", "cre"), email = "bhejblum@hsph.harvard.edu"), person("Chariff", "Alkhassim", role = c("aut"), email = "chariff.alkhassim@isped.fr"), person("Francois", "Caron", role = c("aut"), email = "francois.caron@stats.ox.ac.uk") )
Maintainer: Boris P. Hejblum <bhejblum@hsph.harvard.edu>
LinkingTo: Rcpp, RcppArmadillo
Depends: R (>= 3.1), Rcpp (>= 0.12.4), truncnorm
Imports: graphics, stats, grDevices, ellipse, fastcluster, gplots, ggplot2, pheatmap, reshape2
Suggests: foreach, parallel, doParallel, microbenchmark
Description: Dirichlet process mixture of multivariate normal, skew-normal or skew t-distributions modeling oriented towards flow-cytometry data preprocessing applications.
License: LGPL-3 | file LICENSE
BugReports: https://github.com/borishejblum/NPflow/issues
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-04-26 23:55:28 UTC; bhejblum
Author: Boris P. Hejblum [aut, cre], Chariff Alkhassim [aut], Francois Caron [aut]
Repository: CRAN
Date/Publication: 2016-04-27 13:30:45

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New package nmfgpu4R with initial version 0.2.4
Package: nmfgpu4R
Type: Package
Title: Non-Negative Matrix Factorization (NMF) using CUDA
Version: 0.2.4
Date: 2016-04-27
Author: Sven Koitka [aut, cre, cph], Christoph M. Friedrich [ctb]
Maintainer: Sven Koitka <sven.koitka@fh-dortmund.de>
Description: Wrapper package for the nmfgpu library, which implements several Non-negative Matrix Factorization (NMF) algorithms for CUDA platforms. By using the acceleration of GPGPU computing, the NMF can be used for real-world problems inside the R environment. All CUDA devices starting with Kepler architecture are supported by the library.
License: GPL-3 | file LICENSE
URL: https://github.com/razorx89/nmfgpu4R
BugReports: https://github.com/razorx89/nmfgpu4R/issues
Depends: R (>= 3.1.0)
Imports: Rcpp (>= 0.11.4), Matrix, SparseM, stats, stringr, tools, utils
Suggests: gdata
LinkingTo: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-04-27 09:27:37 UTC; Sven Koitka
Repository: CRAN
Date/Publication: 2016-04-27 18:28:35

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Package mirt updated to version 1.17.1 with previous version 1.16 dated 2016-03-07

Title: Multidimensional Item Response Theory
Description: Analysis of dichotomous and polytomous response data using unidimensional and multidimensional latent trait models under the Item Response Theory paradigm. Exploratory and confirmatory models can be estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory bi-factor and two-tier analyses are available for modeling item testlets. Multiple group analysis and mixed effects designs also are available for detecting differential item and test functioning as well as modelling item and person covariates.
Author: Phil Chalmers [aut, cre, cph], Joshua Pritikin [ctb], Alexander Robitzsch [ctb], Mateusz Zoltak [ctb], KwonHyun Kim [ctb], Carl F. Falk [ctb], Adam Meade [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>

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Package minval updated to version 0.3 with previous version 0.2 dated 2016-03-14

Title: MINimal VALidation for Stoichiometric Reactions
Description: For a given set of stoichiometric reactions, this package evaluates the mass balance and extracts all reactants, products, orphan metabolites, metabolite names and compartments. Also are included some options to check the compound names associated to Chemical Entities of Biological Interest (ChEBI) database <https://www.ebi.ac.uk/chebi>.
Author: Daniel Osorio [aut,cre], Janneth Gonzalez [aut], Andres Pinzon-Velasco [aut]
Maintainer: Daniel Osorio <dcosorioh@unal.edu.co>

Diff between minval versions 0.2 dated 2016-03-14 and 0.3 dated 2016-04-27

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Package intsvy updated to version 1.9 with previous version 1.8 dated 2015-12-01

Title: International Assessment Data Manager
Description: Provides tools for importing, merging, and analysing data from international assessment studies (TIMSS, PIRLS, PISA. ICILS, and PIAAC).
Author: Daniel Caro <daniel.caro@education.ox.ac.uk>, Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Maintainer: Daniel Caro <daniel.caro@education.ox.ac.uk>

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Package hit updated to version 0.2-2 with previous version 0.2-1 dated 2016-01-08

Title: Hierarchical Inference Testing
Description: Hierarchical inference testing (HIT) for (generalized) linear models with correlated covariates applicable to high-dimensional settings.
Author: Jonas Klasen [aut, cre]
Maintainer: Jonas Klasen <qtcat@gmx.de>

Diff between hit versions 0.2-1 dated 2016-01-08 and 0.2-2 dated 2016-04-27

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Package gProfileR updated to version 0.6.1 with previous version 0.5.3 dated 2015-04-06

Title: Interface to the 'g:Profiler' Toolkit
Description: Functional enrichment analysis, gene identifier conversion and mapping homologous genes across related organisms via the 'g:Profiler' toolkit (http://biit.cs.ut.ee/gprofiler/).
Author: Juri Reimand <juri.reimand@ut.ee>, Raivo Kolde <rkolde@gmail.com>, Tambet Arak <tambet.arak@gmail.com>
Maintainer: Tambet Arak <tambet.arak@gmail.com>

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Package ggdendro updated to version 0.1-20 with previous version 0.1-18 dated 2016-02-25

Title: Create Dendrograms and Tree Diagrams Using 'ggplot2'
Description: This is a set of tools for dendrograms and tree plots using 'ggplot2'. The 'ggplot2' philosophy is to clearly separate data from the presentation. Unfortunately the plot method for dendrograms plots directly to a plot device without exposing the data. The 'ggdendro' package resolves this by making available functions that extract the dendrogram plot data. The package provides implementations for tree, rpart, as well as diana and agnes cluster diagrams.
Author: Andrie de Vries [aut, cre], Brian D. Ripley [aut] (author of package tree)
Maintainer: Andrie de Vries <apdevries@gmail.com>

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New package face with initial version 0.1-1
Package: face
Title: Fast Covariance Estimation for Sparse Functional Data
Version: 0.1-1
Author: Luo Xiao [aut,cre], Cai Li [aut], Will Checkley [aut], Ciprian Crainiceanu [aut]
Maintainer: Luo Xiao <lxiao5@ncsu.edu>
Description: Fast covariance estimation for sparse functional data.
Depends: R (>= 2.1.4)
Imports: stats, splines, Matrix, matrixcalc
License: GPL-3
LazyLoad: yes
LazyData: true
Repository: CRAN
NeedsCompilation: no
Packaged: 2016-04-27 13:15:24 UTC; lxiao5
Date/Publication: 2016-04-27 18:56:48

More information about face at CRAN
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Package CUSUMdesign updated to version 1.1.2 with previous version 1.1.1 dated 2015-10-31

Title: Compute Decision Interval and Average Run Length for CUSUM Charts
Description: Computation of decision intervals (H) and average run lengths (ARL) for CUSUM charts.
Author: Douglas M. Hawkins, David H. Olwell, and Boxiang Wang
Maintainer: Boxiang Wang <boxiang@umn.edu>

Diff between CUSUMdesign versions 1.1.1 dated 2015-10-31 and 1.1.2 dated 2016-04-27

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Package codyn updated to version 1.1.0 with previous version 1.0.1 dated 2016-01-15

Title: Community Dynamics Metrics
Description: A toolbox of ecological community dynamics metrics that are explicitly temporal. Functions fall into two categories: temporal diversity indices and community stability metrics. The diversity indices are temporal analogs to traditional diversity indices such as richness and rank-abundance curves. Specifically, functions are provided to calculate species turnover, mean rank shifts, and lags in community similarity between time points. The community stability metrics calculate overall stability and patterns of species covariance and synchrony over time.
Author: Lauren Hallett [aut], Sydney K. Jones [aut], A. Andrew M. MacDonald [aut], Dan F. B. Flynn [aut], Peter Slaughter [aut], Julie Ripplinger [aut], Scott L. Collins [aut], Corinna Gries [aut], Matthew B. Jones [aut, cre]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>

Diff between codyn versions 1.0.1 dated 2016-01-15 and 1.1.0 dated 2016-04-27

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Package CDROM updated to version 1.1 with previous version 1.0 dated 2016-03-22

Title: Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data
Description: Classification is based on the recently developed phylogenetic approach by Assis and Bachtrog (2013). The method classifies the evolutionary mechanisms retaining pairs of duplicate genes (conservation, neofunctionalization, subfunctionalization, or specialization) by comparing gene expression profiles of duplicate genes in one species to those of their single- copy ancestral genes in a sister species.
Author: Brent Perry <brp5173@psu.edu>, Raquel Assis <rassis@psu.edu>
Maintainer: Raquel Assis <rassis@psu.edu>

Diff between CDROM versions 1.0 dated 2016-03-22 and 1.1 dated 2016-04-27

 DESCRIPTION  |    6 ++--
 MD5          |    6 ++--
 R/CDROM.R    |   87 ++++++++++++++++++++++++++++++++++++++++++-----------------
 man/CDROM.Rd |    6 ++--
 4 files changed, 72 insertions(+), 33 deletions(-)

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Package candisc updated to version 0.7-0 with previous version 0.6-7 dated 2015-04-19

Title: Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
Description: Functions for computing and visualizing generalized canonical discriminant analyses and canonical correlation analysis for a multivariate linear model. Traditional canonical discriminant analysis is restricted to a one-way 'MANOVA' design and is equivalent to canonical correlation analysis between a set of quantitative response variables and a set of dummy variables coded from the factor variable. The 'candisc' package generalizes this to higher-way 'MANOVA' designs for all factors in a multivariate linear model, computing canonical scores and vectors for each term. The graphic functions provide low-rank (1D, 2D, 3D) visualizations of terms in an 'mlm' via the 'plot.candisc' and 'heplot.candisc' methods. Related plots are now provided for canonical correlation analysis when all predictors are quantitative.
Author: Michael Friendly [aut, cre], John Fox [aut]
Maintainer: Michael Friendly <friendly@yorku.ca>

Diff between candisc versions 0.6-7 dated 2015-04-19 and 0.7-0 dated 2016-04-27

 DESCRIPTION            |   12 ++++----
 MD5                    |   28 ++++++++++---------
 NAMESPACE              |   11 ++++++-
 NEWS                   |   11 +++++++
 R/heplot.candisc.R     |    8 ++---
 R/plot.candisc.R       |   72 ++++++++++++++++++++++++++++++++++++++-----------
 R/varOrder.R           |only
 data/Grass.rda         |binary
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 man/candisc.Rd         |   33 +++++++++++++++++-----
 man/plot.cancor.Rd     |    2 -
 man/varOrder.Rd        |only
 17 files changed, 134 insertions(+), 52 deletions(-)

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Tue, 26 Apr 2016

New package REREFACT with initial version 1.0
Package: REREFACT
Version: 1.0
Date: 2016-04-15
Title: Reordering and/or Reflecting Factors for Simulation Studies with Exploratory Factor Analysis
Author: Soyeon Ahn, Cengiz Zopluoglu, Seniz Celimli, Min Lu, & Nicholas D. Myers
Maintainer: Soyeon Ahn <s.ahn@miami.edu>
Depends: psych, combinat, Matrix, gdata, methods
Description: Executes a post-rotation algorithm that REorders and/or REflects FACTors (REREFACT) for each replication of a simulation study with exploratory factor analysis.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-04-26 14:53:08 UTC; c.zopluoglu1
Repository: CRAN
Date/Publication: 2016-04-26 19:32:02

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Package FuzzyAHP updated to version 0.7.1 with previous version 0.6.1 dated 2016-04-06

Title: (Fuzzy) AHP Calculation
Description: Calculation of AHP (Analytic Hierarchy Process - <http:// en.wikipedia.org/wiki/Analytic_hierarchy_process>) with classic and fuzzy weights based on Saaty's pairwise comparison method for determination of weights.
Author: Jan Caha [aut, cre], Aneta Drážná [ctb, com]
Maintainer: Jan Caha <cahik@atlas.cz>

Diff between FuzzyAHP versions 0.6.1 dated 2016-04-06 and 0.7.1 dated 2016-04-26

 DESCRIPTION                                    |   17 +-
 MD5                                            |   76 ++++++-----
 NAMESPACE                                      |    5 
 R/class-FuzzyData.R                            |   26 +++
 R/class-FuzzyPairwiseComparisonMatrix.R        |  166 ++++++++++++++++++++++++-
 R/class-FuzzyWeights.R                         |    9 +
 R/class-PairwiseComparisonMatrix.R             |  132 ++++++++++++++-----
 R/function-calculateWeights.R                  |    2 
 R/function-compare.R                           |   41 ++++++
 R/function-consistencyIndex.R                  |only
 R/function-consistencyRatio.R                  |   81 +++++++++---
 R/function-defuzzify.R                         |   35 ++++-
 R/function-insertInto.R                        |only
 R/function-internal-optimization.R             |   36 ++---
 R/function-print.R                             |   17 ++
 R/function-strictConsistency.R                 |   32 +++-
 R/function-weakConsistency.R                   |   36 +++--
 inst/doc/examples.R                            |   16 +-
 inst/doc/examples.Rmd                          |   29 ++--
 inst/doc/examples.html                         |   81 ++++++++----
 inst/doc/main-info.Rmd                         |    2 
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 man/compareResults-methods.Rd                  |only
 man/consistencyIndex-methods.Rd                |only
 man/consistencyRatio-methods.Rd                |   20 ++-
 man/defuzziffy-methods.Rd                      |   19 ++
 man/fuzzyData-methods.Rd                       |    8 -
 man/fuzzyPairwiseComparisonMatrix-methods.Rd   |   13 +
 man/fuzzyPairwiseComparisonMatrix1-methods.Rd  |only
 man/insertInto-methods.Rd                      |only
 man/pairwiseComparisonMatrix-methods.Rd        |    8 +
 man/strictConsistency-methods.Rd               |   13 +
 man/weakConsistency-methods.Rd                 |   15 +-
 tests/testthat/test_calculateAHP.R             |    7 +
 tests/testthat/test_consistencyRatio.R         |    4 
 tests/testthat/test_fuzzy_AHP.R                |   42 ++++--
 tests/testthat/test_pairwiseComparisonMatrix.R |   17 +-
 vignettes/ahp-bibliography.bib                 |   29 ++++
 vignettes/examples.Rmd                         |   29 ++--
 vignettes/main-info.Rmd                        |    2 
 42 files changed, 841 insertions(+), 240 deletions(-)

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New package flexrsurv with initial version 1.3.3
Package: flexrsurv
Type: Package
Title: Flexible Relative Survival
Version: 1.3.3
Date: 2016-04-22
Authors@R: c( person("Isabelle", "Clerc-Urms", role="aut"), person("Michel", "Grzebyk", role = c("aut", "cre"), email = "michel.grzebyk@inrs.fr"), person("Guy", "Hdelin", role="ctb"), person("CENSUR working survival group", role = "ctb") )
Author: Isabelle Clerc-Urms [aut], Michel Grzebyk [aut, cre], Guy Hdelin [ctb], CENSUR working survival group [ctb]
Maintainer: Michel Grzebyk <michel.grzebyk@inrs.fr>
Description: Perform relative survival analyses using approaches described in Remontet et al. (2007) <DOI:10.1002/sim.2656> and Mahboubi et al. (2011) <DOI:10.1002/sim.4208>. It implements non-linear, non-proportional effects and both non proportional and non linear effects using splines (B-spline and truncated power basis).
License: GPL (>= 2.0)
Depends: methods, splines, survival, stats, matrixcalc, Epi
Suggests: relsurv
Imports: utils, orthogonalsplinebasis
Encoding: latin1
NeedsCompilation: yes
Packaged: 2016-04-25 16:11:06 UTC; michel.grzebyk
Repository: CRAN
Date/Publication: 2016-04-26 19:32:05

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