More information about grofit at CRAN
Path: /cran/new | permanent link
Title: Basic Non-Compartmental Pharmacokinetics
Diff between PK versions 1.2-0 dated 2010-01-20 and 1.2-1 dated 2010-02-08
More information about PK at CRAN
Description: Estimation of pharmacokinetic parameters using
non-compartmental theory
Author: Thomas Jaki
Maintainer: Thomas Jaki
PK-1.2-0/PK/inst/doc |only
PK-1.2-1/PK/DESCRIPTION | 8 +-
PK-1.2-1/PK/R/all.class.R | 158 ++++++++++++++++++++++++++++++++-----------
PK-1.2-1/PK/R/internal.R | 2
PK-1.2-1/PK/R/lee.R | 2
PK-1.2-1/PK/R/nca.ssd.R | 11 +-
PK-1.2-1/PK/inst/CITATION | 2
PK-1.2-1/PK/inst/NEWS |only
PK-1.2-1/PK/man/all.class.Rd | 9 +-
PK-1.2-1/PK/man/lee.Rd | 4 -
10 files changed, 141 insertions(+), 55 deletions(-)
Path: /cran/updated | permanent link
Title: Function Utilities
Diff between fUtilities versions 2100.77 dated 2009-09-29 and 2110.78 dated 2010-02-08
More information about fUtilities at CRAN
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Author: Diethelm Wuertz and many others. See the SOURCE file
Maintainer: Rmetrics Core Team
DESCRIPTION | 10 +++++-----
man/colorLocator.Rd | 2 +-
2 files changed, 6 insertions(+), 6 deletions(-)
Path: /cran/updated | permanent link
Title: Rmetrics - Markets and Basic Statistics
Diff between fBasics versions 2100.78 dated 2009-09-28 and 2110.79 dated 2010-02-08
More information about fBasics at CRAN
Description: Environment for teaching "Financial Engineering and
Computational Finance" NOTE: SEVERAL PARTS ARE STILL
PRELIMINARY AND MAY BE CHANGED IN THE FUTURE. THIS TYPICALLY
INCLUDES FUNCTION AND ARGUMENT NAMES, AS WELL AS DEFAULTS FOR
ARGUMENTS AND RETURN VALUES. Please donate, www.rmetrics.org,
to support future activities of the Rmetrics association.
Author: Diethelm Wuertz and Rmetrics core team members, uses code
builtin from the following R contributed packages: gmm from
Pierre Chauss, gld from Robert King, gss from Chong Gu, nortest
from Juergen Gross, HyperbolicDist from David Scott, sandwich
from Thomas Lumley and Achim Zeileis, and fortran/C code from
Kersti Aas.
Maintainer: Rmetrics Core Team
fBasics-2100.78/fBasics/R/builtin-gelGMM.R |only
fBasics-2100.78/fBasics/R/builtin-gmmGMM.R |only
fBasics-2100.78/fBasics/R/builtin-sandwichGMM.R |only
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fBasics-2100.78/fBasics/R/color-RGB.R |only
fBasics-2100.78/fBasics/R/color-Table.R |only
fBasics-2100.78/fBasics/R/dist-nFit.R |only
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fBasics-2110.79/fBasics/ChangeLog | 61
fBasics-2110.79/fBasics/DESCRIPTION | 26
fBasics-2110.79/fBasics/NAMESPACE | 119 +
fBasics-2110.79/fBasics/R/builtin-gelGmm.R |only
fBasics-2110.79/fBasics/R/builtin-glGld.R |only
fBasics-2110.79/fBasics/R/builtin-gmmGmm.R |only
fBasics-2110.79/fBasics/R/builtin-hypHyperbolicDist.R |only
fBasics-2110.79/fBasics/R/builtin-kweightsSandwhich.R |only
fBasics-2110.79/fBasics/R/builtin-posdefCorpcor.R |only
fBasics-2110.79/fBasics/R/builtin-ssdenGss.R |only
fBasics-2110.79/fBasics/R/builtin-testNortest.R |only
fBasics-2110.79/fBasics/R/builtin-varpieA2R.R |only
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fBasics-2110.79/fBasics/R/dist-fDISTFIT.R | 2
fBasics-2110.79/fBasics/R/dist-gh.R | 30
fBasics-2110.79/fBasics/R/dist-ghFit.R | 23
fBasics-2110.79/fBasics/R/dist-ghMode.R | 15
fBasics-2110.79/fBasics/R/dist-ghMoments.R | 208 +-
fBasics-2110.79/fBasics/R/dist-ghRobMoments.R |only
fBasics-2110.79/fBasics/R/dist-ght.R | 63
fBasics-2110.79/fBasics/R/dist-ghtFit.R | 21
fBasics-2110.79/fBasics/R/dist-ghtMode.R | 21
fBasics-2110.79/fBasics/R/dist-ghtMoments.R |only
fBasics-2110.79/fBasics/R/dist-ghtRobMoments.R |only
fBasics-2110.79/fBasics/R/dist-gld.R |only
fBasics-2110.79/fBasics/R/dist-gldFit.R |only
fBasics-2110.79/fBasics/R/dist-gldMode.R |only
fBasics-2110.79/fBasics/R/dist-gldRobMoments.R |only
fBasics-2110.79/fBasics/R/dist-hyp.R | 837 --------
fBasics-2110.79/fBasics/R/dist-hypFit.R | 13
fBasics-2110.79/fBasics/R/dist-hypMode.R | 21
fBasics-2110.79/fBasics/R/dist-hypMoments.R |only
fBasics-2110.79/fBasics/R/dist-hypRobMoments.R |only
fBasics-2110.79/fBasics/R/dist-nig.R | 41
fBasics-2110.79/fBasics/R/dist-nigFit.R | 267 ++
fBasics-2110.79/fBasics/R/dist-nigMode.R | 15
fBasics-2110.79/fBasics/R/dist-nigMoments.R |only
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fBasics-2110.79/fBasics/R/dist-normRobMoments.R |only
fBasics-2110.79/fBasics/R/dist-sgh.R | 32
fBasics-2110.79/fBasics/R/dist-sghFit.R | 25
fBasics-2110.79/fBasics/R/dist-sght.R |only
fBasics-2110.79/fBasics/R/dist-snig.R | 32
fBasics-2110.79/fBasics/R/dist-snigFit.R | 13
fBasics-2110.79/fBasics/R/dist-ssd.R |only
fBasics-2110.79/fBasics/R/dist-ssdFit.R |only
fBasics-2110.79/fBasics/R/dist-stable.R | 33
fBasics-2110.79/fBasics/R/dist-stableFit.R | 30
fBasics-2110.79/fBasics/R/dist-stableMode.R | 11
fBasics-2110.79/fBasics/R/dist-tFit.R | 17
fBasics-2110.79/fBasics/R/gui-HeavisideSlider.R | 2
fBasics-2110.79/fBasics/R/gui-hypSlider.R | 2
fBasics-2110.79/fBasics/R/gui-nigSlider.R | 2
fBasics-2110.79/fBasics/R/gui-returnSeries.R | 16
fBasics-2110.79/fBasics/R/gui-sliderMenu.R | 4
fBasics-2110.79/fBasics/R/gui-stableSlider.R | 2
fBasics-2110.79/fBasics/R/gui-stylizedFacts.R | 30
fBasics-2110.79/fBasics/R/matrix-colVec.R | 17
fBasics-2110.79/fBasics/R/matrix-gridVector.R | 13
fBasics-2110.79/fBasics/R/matrix-hilbert.R | 2
fBasics-2110.79/fBasics/R/matrix-inv.R | 15
fBasics-2110.79/fBasics/R/matrix-kron.R | 15
fBasics-2110.79/fBasics/R/matrix-norm.R | 15
fBasics-2110.79/fBasics/R/matrix-pascal.R | 15
fBasics-2110.79/fBasics/R/matrix-pdl.R | 13
fBasics-2110.79/fBasics/R/matrix-posDefinite.R | 23
fBasics-2110.79/fBasics/R/matrix-rk.R | 15
fBasics-2110.79/fBasics/R/matrix-tr.R | 15
fBasics-2110.79/fBasics/R/matrix-triang.R | 15
fBasics-2110.79/fBasics/R/matrix-tslag.R | 15
fBasics-2110.79/fBasics/R/matrix-vech.R | 15
fBasics-2110.79/fBasics/R/plot-acfPlot.R | 19
fBasics-2110.79/fBasics/R/plot-boxPlot.R | 17
fBasics-2110.79/fBasics/R/plot-counts.R | 15
fBasics-2110.79/fBasics/R/plot-histPlot.R | 19
fBasics-2110.79/fBasics/R/plot-qqPlot.R | 110 -
fBasics-2110.79/fBasics/R/plot-scalinglawPlot.R | 15
fBasics-2110.79/fBasics/R/plot-seriesPlot.R | 21
fBasics-2110.79/fBasics/R/plot-subPlot.R | 17
fBasics-2110.79/fBasics/R/plot-subStars.R | 15
fBasics-2110.79/fBasics/R/plot-varpie.R | 53
fBasics-2110.79/fBasics/R/plot.R | 44
fBasics-2110.79/fBasics/R/stats-basicStats.R | 11
fBasics-2110.79/fBasics/R/stats-interpAkima.R |only
fBasics-2110.79/fBasics/R/stats-interpKrige.R |only
fBasics-2110.79/fBasics/R/stats-interpLinear.R |only
fBasics-2110.79/fBasics/R/stats-maxdd.R | 19
fBasics-2110.79/fBasics/R/stats-rowStats.R | 64
fBasics-2110.79/fBasics/R/stats-sampleLmoments.R |only
fBasics-2110.79/fBasics/R/stats-sampleRobMoments.R |only
fBasics-2110.79/fBasics/R/test-correlationTest.R | 21
fBasics-2110.79/fBasics/R/test-fHTEST.R | 22
fBasics-2110.79/fBasics/R/test-jbALM.R | 13
fBasics-2110.79/fBasics/R/test-jbLM.R | 13
fBasics-2110.79/fBasics/R/test-jbTable.R | 21
fBasics-2110.79/fBasics/R/test-ks2Test.R | 15
fBasics-2110.79/fBasics/R/test-locationTest.R | 17
fBasics-2110.79/fBasics/R/test-normalityTest.R |only
fBasics-2110.79/fBasics/R/test-scaleTest.R | 21
fBasics-2110.79/fBasics/R/test-varianceTest.R | 21
fBasics-2110.79/fBasics/R/utils-Heaviside.R | 21
fBasics-2110.79/fBasics/R/utils-Sys.putenv.R | 4
fBasics-2110.79/fBasics/R/utils-as.matrix.ts.R | 4
fBasics-2110.79/fBasics/R/utils-baseMethods.R | 46
fBasics-2110.79/fBasics/R/utils-characterTable.R | 2
fBasics-2110.79/fBasics/R/utils-colIds.R | 8
fBasics-2110.79/fBasics/R/utils-colorLocator.R |only
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fBasics-2110.79/fBasics/R/utils-decor.R | 89
fBasics-2110.79/fBasics/R/utils-getS4.R | 49
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fBasics-2110.79/fBasics/R/utils-symbolTable.R | 21
fBasics-2110.79/fBasics/R/utils-unitTest.R | 6
fBasics-2110.79/fBasics/R/utils-unitrootNA.R | 15
fBasics-2110.79/fBasics/inst/unitTests/runit.HyperbolicDistribution.R | 8
fBasics-2110.79/fBasics/man/00fBasics-package.Rd | 956 ++++++++--
fBasics-2110.79/fBasics/man/baseMethods.Rd | 217 --
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fBasics-2110.79/fBasics/man/dist-gh.Rd | 44
fBasics-2110.79/fBasics/man/dist-ghFit.Rd | 4
fBasics-2110.79/fBasics/man/dist-ghMode.Rd | 2
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fBasics-2110.79/fBasics/man/dist-ghtFit.Rd | 16
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fBasics-2110.79/fBasics/man/utils-symbolTable.Rd |only
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fBasics-2110.79/fBasics/src/gld.c |only
fBasics-2110.79/fBasics/src/gss.f |only
279 files changed, 2013 insertions(+), 2402 deletions(-)
Path: /cran/updated | permanent link
Title: Multidimensional Numerical Integration
Diff between R2Cuba versions 1.0-3 dated 2010-01-21 and 1.0-4 dated 2010-02-08
More information about R2Cuba at CRAN
Description: R2Cuba implements four general-purpose multidimensional
integration algorithms: Vegas, Suave, Divonne and Cuhre
Author: The Cuba library has been written by Thomas Hahn
(http://wwwth.mppmu.mpg.de/members/hahn); Interface to R was
written by Annie Bouvier and Kiên Kiêu
Maintainer: Annie Bouvier
DESCRIPTION | 12 ++++++------
R/commoncuba.R | 10 +++-------
man/cuhre.Rd | 6 ++++--
3 files changed, 13 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Title: Robust tests for case-control genetic association studies
Diff between Rassoc versions 1.01 dated 2009-11-06 and 1.02 dated 2010-02-08
More information about Rassoc at CRAN
Description: This package supplies several robust tests for
case-control genetic association studies. The tests contained
in this package are: allelic based test, Cochran-Armitage trend
test, maximin efficiency robust test, MAX3 test and genetic
model selection test. For each test, the corresponding R code
reports the test statistics and the associated p-value.
Author: Yong ZANG
Maintainer: Yong ZANG
Rassoc-1.01/Rassoc/JSS487_revisionV2.pdf |only
Rassoc-1.02/Rassoc/DESCRIPTION | 8 ++++----
Rassoc-1.02/Rassoc/JSS33(8).pdf |only
Rassoc-1.02/Rassoc/R/ABT.R | 4 +---
Rassoc-1.02/Rassoc/R/CATT.R | 4 +---
Rassoc-1.02/Rassoc/R/GMS.R | 4 +---
Rassoc-1.02/Rassoc/R/MAX3.R | 4 +---
Rassoc-1.02/Rassoc/R/MERT.R | 4 +---
Rassoc-1.02/Rassoc/inst |only
Rassoc-1.02/Rassoc/man/ABT.Rd | 2 +-
Rassoc-1.02/Rassoc/man/CATT.Rd | 2 +-
Rassoc-1.02/Rassoc/man/GMS.Rd | 2 +-
Rassoc-1.02/Rassoc/man/MAX3.Rd | 2 +-
Rassoc-1.02/Rassoc/man/MERT.Rd | 2 +-
Rassoc-1.02/Rassoc/man/Rassoc-package.Rd | 2 +-
15 files changed, 15 insertions(+), 25 deletions(-)
Path: /cran/updated | permanent link
Title: Bayesian treed Gaussian process models
Diff between tgp versions 2.3 dated 2009-12-26 and 2.3-1 dated 2010-02-08
More information about tgp at CRAN
Description: Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes with jumps to
the limiting linear model (LLM). Special cases also
implemented include Bayesian linear models, CART, treed linear
models, stationary separable and isotropic Gaussian processes.
Provides 1-d and 2-d plotting functions (with projection and
slice capabilities) and tree drawing, designed for
visualization of tgp-class output. Sensitivity analysis and
multi-resolution models are supported. Sequential experimental
design and adaptive sampling functions are also provided,
including ALM, ALC, and expected improvement. The latter
supports derivative-free optimization of noisy black-box
functions.
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
CITATION |only
ChangeLog | 6 ++
DESCRIPTION | 6 +-
inst/doc/tgp.Rnw | 2
inst/doc/tgp2.Rnw | 97 +++++++++++++++++++++++++++++++---------------
man/btgp.Rd | 6 ++
man/exp2d.Rd | 10 ++++
man/exp2d.Z.Rd | 6 ++
man/friedman.1.data.Rd | 10 ++++
man/tgp-package.Rd | 10 ++++
man/tgp.default.params.Rd | 10 ++++
man/tgp.design.Rd | 6 ++
12 files changed, 131 insertions(+), 38 deletions(-)
Path: /cran/updated | permanent link
Title: Longitudinal Data
Diff between longitudinalData versions 0.6 dated 2009-09-03 and 0.6.1 dated 2010-02-08
More information about longitudinalData at CRAN
Description: Tools for Longitudinal Data
Author: Christophe Genolini
Maintainer: Christophe Genolini
longitudinalData-0.6.1/longitudinalData/DESCRIPTION | 10
longitudinalData-0.6.1/longitudinalData/NAMESPACE | 13
longitudinalData-0.6.1/longitudinalData/R/clean.r |only
longitudinalData-0.6.1/longitudinalData/R/criterion.r | 50 +
longitudinalData-0.6.1/longitudinalData/R/distanceFrechet.r |only
longitudinalData-0.6.1/longitudinalData/R/function.r | 16
longitudinalData-0.6.1/longitudinalData/R/global.r | 3
longitudinalData-0.6.1/longitudinalData/R/imputation.r | 209 +++++--
longitudinalData-0.6.1/longitudinalData/R/longData.r | 9
longitudinalData-0.6.1/longitudinalData/R/partition.r | 5
longitudinalData-0.6.1/longitudinalData/R/plotLongData.r | 5
longitudinalData-0.6.1/longitudinalData/man/LongData-class.Rd | 6
longitudinalData-0.6.1/longitudinalData/man/distFrechet.Rd |only
longitudinalData-0.6.1/longitudinalData/man/distTraj.Rd |only
longitudinalData-0.6.1/longitudinalData/man/longitudinalData-package.Rd | 6
longitudinalData-0.6.1/longitudinalData/man/partition.Rd | 2
longitudinalData-0.6.1/longitudinalData/man/pathFrechet.Rd |only
longitudinalData-0.6.1/longitudinalData/man/plot.Rd |only
longitudinalData-0.6.1/longitudinalData/src |only
longitudinalData-0.6.1/longitudinalData/testsDev/apresLongData.RData |only
longitudinalData-0.6.1/longitudinalData/testsDev/testCriterion.r | 3
longitudinalData-0.6.1/longitudinalData/testsDev/testDistance.r |only
longitudinalData-0.6.1/longitudinalData/testsDev/testFunction.r | 17
longitudinalData-0.6.1/longitudinalData/testsDev/testImputation.r | 271 +++++++---
longitudinalData-0.6.1/longitudinalData/testsDev/testLongData.r | 20
longitudinalData-0.6.1/longitudinalData/testsDev/testPartition.r | 5
longitudinalData-0.6.1/longitudinalData/testsDev/testPlotLongData.r | 3
longitudinalData-0.6.1/longitudinalData/testsDev/verifRayCriterion.r |only
longitudinalData-0.6/longitudinalData/man/plotTraj.Rd |only
longitudinalData-0.6/longitudinalData/testsDev/evenementsDeVie.aux |only
longitudinalData-0.6/longitudinalData/testsDev/evenementsDeVie.dvi |only
longitudinalData-0.6/longitudinalData/testsDev/evenementsDeVie.log |only
longitudinalData-0.6/longitudinalData/testsDev/evenementsDeVie.tex |only
longitudinalData-0.6/longitudinalData/testsDev/testLongData-Partition.r |only
34 files changed, 460 insertions(+), 193 deletions(-)
Path: /cran/updated | permanent link
Title: Estimate inverse probability weights.
Diff between ipw versions 1.0 dated 2010-02-04 and 1.0-1 dated 2010-02-08
More information about ipw at CRAN
Description: Estimate inverse probability weights. These are typically
used to perform inverse probability weighting (IPW) to fit a
marginal structural model (MSM), to estimate causal effects
from observational data. Both data from point treatment
situations and longitudinal studies can be used.
Author: Willem M. van der Wal
Maintainer: Willem M. van der Wal
DESCRIPTION | 8 +-
man/haartdat.Rd | 30 +++++-----
man/healthdat.Rd | 25 ++++----
man/ipwplot.Rd | 34 ++++++-----
man/ipwpoint.Rd | 30 +++++-----
man/ipwtm.Rd | 161 ++++++++++++++++++++++++++++++++-----------------------
man/timedat.Rd | 134 +++++++++++++++++++++++++++------------------
man/tstartfun.Rd | 4 -
8 files changed, 244 insertions(+), 182 deletions(-)
Path: /cran/updated | permanent link
Title: Dependent Mixture Models
Diff between depmixS4 versions 0.2-2 dated 2009-06-30 and 0.3-0 dated 2010-02-08
More information about depmixS4 at CRAN
Description: Fit latent (hidden) Markov models on mixed categorical and
continuous (timeseries) data, otherwise known as dependent
mixture models
Author: Ingmar Visser
Maintainer: Ingmar Visser
depmixS4-0.2-2/depmixS4/depmixNew-test2.R |only
depmixS4-0.2-2/depmixS4/depmixNew-test4.R |only
depmixS4-0.2-2/depmixS4/man/response.Rd |only
depmixS4-0.2-2/depmixS4/srcll |only
depmixS4-0.3-0/depmixS4/DESCRIPTION | 14 -
depmixS4-0.3-0/depmixS4/NAMESPACE | 13 -
depmixS4-0.3-0/depmixS4/NEWS |only
depmixS4-0.3-0/depmixS4/R/allGenerics.R | 10 -
depmixS4-0.3-0/depmixS4/R/multinomial.R | 10 -
depmixS4-0.3-0/depmixS4/R/responseGLM.R | 2
depmixS4-0.3-0/depmixS4/R/responseGLMMULTINOM.R | 2
depmixS4-0.3-0/depmixS4/R/responseMVN.R | 2
depmixS4-0.3-0/depmixS4/R/responseNORM.R | 2
depmixS4-0.3-0/depmixS4/R/stationary.R |only
depmixS4-0.3-0/depmixS4/R/transInit.R | 2
depmixS4-0.3-0/depmixS4/man/GLMresponse.Rd |only
depmixS4-0.3-0/depmixS4/man/balance.Rd | 44 ++--
depmixS4-0.3-0/depmixS4/man/depmix-internal.Rd | 17 +
depmixS4-0.3-0/depmixS4/man/depmix-methods.Rd | 5
depmixS4-0.3-0/depmixS4/man/depmix.Rd | 61 ++++--
depmixS4-0.3-0/depmixS4/man/depmix.fit.Rd | 4
depmixS4-0.3-0/depmixS4/man/depmixS4-package.Rd | 16 +
depmixS4-0.3-0/depmixS4/man/makeDepmix.Rd | 219 ++++++++++++++++++++----
depmixS4-0.3-0/depmixS4/man/mix.Rd | 22 +-
depmixS4-0.3-0/depmixS4/man/mix.sim-class.Rd | 8
depmixS4-0.3-0/depmixS4/man/response-class.Rd | 2
depmixS4-0.3-0/depmixS4/man/response-classes.Rd | 4
depmixS4-0.3-0/depmixS4/man/responses.Rd | 1
depmixS4-0.3-0/depmixS4/man/speed.Rd | 24 +-
depmixS4-0.3-0/depmixS4/man/transInit.Rd |only
30 files changed, 355 insertions(+), 129 deletions(-)
Path: /cran/updated | permanent link
Title: Climate analysis and empirical-statistical downscaling (ESD)
package for monthly and daily data.
Diff between clim.pact versions 2.2-39 dated 2009-10-21 and 2.2-41 dated 2010-02-08
More information about clim.pact at CRAN
Description: The package contains R functions for retrieving data,
making climate analysis and downscaling of monthly mean and
daily mean global climate scenarios. (Windows-users may need to
obtain the 'ncdf' package from URL
'http://www.stats.ox.ac.uk/pub/RWin/' to get clim.pact to
work). The package is also described in the book
'Empirical-Statistical Downscaling
(http://www.worldscibooks.com/environsci/6908.html)
Author: Rasmus E. Benestad
Maintainer: Rasmus E. Benestad
clim.pact-2.2-39/clim.pact/data/addland.rda |only
clim.pact-2.2-41/clim.pact/DESCRIPTION | 8 ++++----
clim.pact-2.2-41/clim.pact/R/CCA.R | 4 ++--
clim.pact-2.2-41/clim.pact/R/DSpdf.exp.R | 2 +-
clim.pact-2.2-41/clim.pact/R/addland.R | 2 +-
clim.pact-2.2-41/clim.pact/R/combine.R | 2 +-
clim.pact-2.2-41/clim.pact/R/corField.R | 2 +-
clim.pact-2.2-41/clim.pact/R/ds.R | 2 +-
clim.pact-2.2-41/clim.pact/R/extras.R | 2 +-
clim.pact-2.2-41/clim.pact/R/getnordklim.R | 6 ++++--
clim.pact-2.2-41/clim.pact/R/map.R | 2 +-
clim.pact-2.2-41/clim.pact/R/retrieve.nc.R | 24 +++++++++++++++---------
clim.pact-2.2-41/clim.pact/R/satellite.R | 2 +-
clim.pact-2.2-41/clim.pact/R/station.obj.R | 2 +-
clim.pact-2.2-41/clim.pact/data/addland1.rda |only
clim.pact-2.2-41/clim.pact/man/CCA.Rd | 4 ++--
clim.pact-2.2-41/clim.pact/man/DSpdf.exp.Rd | 2 ++
clim.pact-2.2-41/clim.pact/man/EOF.Rd | 3 ++-
clim.pact-2.2-41/clim.pact/man/addland_data.Rd | 6 +++---
clim.pact-2.2-41/clim.pact/man/anomaly.field.Rd | 10 ++++++----
clim.pact-2.2-41/clim.pact/man/cdfcont.Rd | 3 ++-
clim.pact-2.2-41/clim.pact/man/rotate.Rd | 4 ++--
22 files changed, 53 insertions(+), 39 deletions(-)
Path: /cran/updated | permanent link
Title: statistical disclosure control for tabular data
Diff between sdcTable versions 0.0.8 dated 2009-12-28 and 0.0.9 dated 2010-02-08
More information about sdcTable at CRAN
Description: R-Package for statistical disclosure control for tabular
data.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl
sdcTable-0.0.8/sdcTable/R/genCodesFromFile.r |only
sdcTable-0.0.8/sdcTable/man/genCodesFromFile.Rd |only
sdcTable-0.0.9/sdcTable/DESCRIPTION | 10 -
sdcTable-0.0.9/sdcTable/NAMESPACE | 2
sdcTable-0.0.9/sdcTable/R/createFullData.r | 125 ++++++++--------
sdcTable-0.0.9/sdcTable/R/genCodesFromList.r |only
sdcTable-0.0.9/sdcTable/R/pasteStrVec.r |only
sdcTable-0.0.9/sdcTable/R/processTableHITAS.r | 56 +++----
sdcTable-0.0.9/sdcTable/R/zzz.R | 2
sdcTable-0.0.9/sdcTable/configure |only
sdcTable-0.0.9/sdcTable/man/createFullData.Rd | 141 +++++++++----------
sdcTable-0.0.9/sdcTable/man/exampleFullData.Rd | 30 ++--
sdcTable-0.0.9/sdcTable/man/exampleMinimalData.Rd | 29 ++-
sdcTable-0.0.9/sdcTable/man/genCodesFromList.Rd |only
sdcTable-0.0.9/sdcTable/man/pasteStrVec.Rd |only
sdcTable-0.0.9/sdcTable/man/processTableHITAS.Rd | 13 -
sdcTable-0.0.9/sdcTable/man/processTableHYPERCUBE.Rd | 10 -
sdcTable-0.0.9/sdcTable/man/protectTable.Rd | 61 ++++----
sdcTable-0.0.9/sdcTable/man/roundSubtable.Rd | 17 +-
sdcTable-0.0.9/sdcTable/man/summary.safeTable.Rd | 17 +-
sdcTable-0.0.9/sdcTable/src/Makevars.in |only
sdcTable-0.0.9/sdcTable/src/Makevars.win |only
sdcTable-0.0.9/sdcTable/src/myPaste.cpp |only
23 files changed, 268 insertions(+), 245 deletions(-)
Path: /cran/updated | permanent link
Title: Draw Geographical Maps
Diff between maps versions 2.1-0 dated 2009-03-21 and 2.1-1 dated 2010-02-08
More information about maps at CRAN
Description: Display of maps. Projection code and larger maps are in
separate packages (mapproj and mapdata).
Author: Original S code by Richard A. Becker and Allan R. Wilks. R
version by Ray Brownrigg
Maintainer: Ray Brownrigg
DESCRIPTION | 8 ++++----
data/world.cities.rda |binary
2 files changed, 4 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Title: Extra Map Databases
Diff between mapdata versions 2.1-0 dated 2009-03-21 and 2.1-1 dated 2010-02-08
More information about mapdata at CRAN
Description: Supplement to maps package, providing the larger and/or
higher-resolution databases.
Author: Original S code by Richard A. Becker and Allan R. Wilks. R
version by Ray Brownrigg
Maintainer: Ray Brownrigg
DESCRIPTION | 8 ++++----
src/Makefile.win | 2 ++
2 files changed, 6 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Title: Extra Graphical Utilities Based on Lattice
Diff between latticeExtra versions 0.6-5 dated 2010-01-17 and 0.6-6 dated 2010-02-08
More information about latticeExtra at CRAN
Description: Extra graphical utilities based on lattice
Author: Deepayan Sarkar
Maintainer: Deepayan Sarkar
DESCRIPTION | 8 ++---
NAMESPACE | 8 ++++-
R/c.trellis.R | 7 ++++-
R/doubleYScale.R | 39 +++++++++++++++-------------
R/ecdfplot.R | 4 +-
R/horizonplot.R |only
R/layer.R | 3 +-
R/mapplot.R | 17 ++++++++----
R/marginal.plot.R | 26 +++++++++++--------
R/panel.scaleArrow.R |only
R/panel.tskernel.R | 28 +++++++++++++++-----
R/rootogram.R | 8 ++++-
R/segplot.R | 4 ++
R/tileplot.R | 2 -
R/timeseries.R | 62 ----------------------------------------------
inst/NEWS | 10 +++++++
man/EastAuClimate.Rd | 4 ++
man/USAge.Rd | 1
man/biocAccess.Rd | 2 -
man/ecdfplot.Rd | 1
man/horizonplot.Rd |only
man/layer.Rd | 4 +-
man/mapplot.Rd | 14 ++++++++--
man/panel.scaleArrow.Rd |only
man/panel.tskernel.Rd | 22 ++++++++++------
man/panel.xblocks.Rd | 3 +-
man/theEconomist.theme.Rd | 2 -
27 files changed, 143 insertions(+), 136 deletions(-)
Path: /cran/updated | permanent link
Title: Edge Preserving Smoothing for Images
Diff between epsi versions 1.0-3 dated 2007-10-21 and 1.1-0 dated 2010-02-08
More information about epsi at CRAN
Description: Smoothing methods for images which are based on a
redescending M kernel estimator which preserves edges and
corners.
Author: Tim Garlipp
Maintainer: Tim Garlipp
epsi-1.0-3/epsi/INDEX |only
epsi-1.0-3/epsi/R/zzz.R |only
epsi-1.1-0/epsi/DESCRIPTION | 19 ++++++++++---------
epsi-1.1-0/epsi/NAMESPACE |only
epsi-1.1-0/epsi/man/CGGM.mean.Rd | 8 +++-----
5 files changed, 13 insertions(+), 14 deletions(-)
Path: /cran/updated | permanent link
Title: Edge Detection and Clustering in Images
Diff between edci versions 1.0-1 dated 2004-09-28 and 1.1-0 dated 2010-02-08
More information about edci at CRAN
Description: Detection of edgepoints in images based on the difference
of two asymmetric M kernel estimators. Linear and circular
regression clustering based on redescending M estimators.
Detection of linear edges in images.
Author: Tim Garlipp
Maintainer: Tim Garlipp
edci-1.0-1/edci/INDEX |only
edci-1.0-1/edci/R/zzz.R |only
edci-1.1-0/edci/DESCRIPTION | 23
edci-1.1-0/edci/NAMESPACE |only
edci-1.1-0/edci/R/oregMclust.R | 1408 ++++++++++++++++++------------------
edci-1.1-0/edci/man/bestMclust.Rd | 130 +--
edci-1.1-0/edci/man/circMclust.Rd | 273 +++---
edci-1.1-0/edci/man/deldupMclust.Rd | 113 +-
edci-1.1-0/edci/man/edgecluster.Rd | 2
edci-1.1-0/edci/man/edgepoints.Rd | 268 +++---
edci-1.1-0/edci/man/eplist.Rd | 2
edci-1.1-0/edci/man/oregMclust.Rd | 262 +++---
edci-1.1-0/edci/src/edgepoints.cc | 801 ++++++++++----------
edci-1.1-0/edci/src/statist.h | 7
14 files changed, 1645 insertions(+), 1644 deletions(-)
Path: /cran/updated | permanent link
Title: Documentation for packages distr, distrEx, distrSim, distrTEst,
distrTeach, distrMod, and distrEllipse
Diff between distrDoc versions 2.2 dated 2009-11-03 and 2.2.1 dated 2010-02-08
More information about distrDoc at CRAN
Description: provides documentation in form of a common vignette to
packages distr, distrEx, distrMod, distrSim, distrTEst,
distrTeach, and distrEllipse
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Maintainer: Peter Ruckdeschel
DESCRIPTION | 22
inst/doc/Rplots.pdf |only
inst/doc/distr.Rnw | 19
inst/doc/distr.pdf |28810 ++++++++++++++++++++++++++--------------------------
4 files changed, 14711 insertions(+), 14140 deletions(-)
Path: /cran/updated | permanent link
Title: Object orientated implementation of distributions
Diff between distr versions 2.2 dated 2009-11-03 and 2.2.2 dated 2010-02-08
More information about distr at CRAN
Description: Object orientated implementation of distributions
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Maintainer: Peter Ruckdeschel
DESCRIPTION | 19
R/internalUtils.R | 4
inst/doc/Rplots.pdf |only
inst/doc/newDistributions.Rnw | 8
inst/doc/newDistributions.pdf | 6086 ++++++++++++++++++++------------------
man/0distr-package.Rd | 4
man/simplifyD-methods.Rd | 1
tests/Examples/distr-Ex.Rout.save | 399 +-
8 files changed, 3591 insertions(+), 2930 deletions(-)
Path: /cran/updated | permanent link
Title: Algorithms and framework for Nonnegative Matrix Factorization
(NMF).
Diff between NMF versions 0.2.4 dated 2010-01-12 and 0.3.1 dated 2010-02-08
More information about NMF at CRAN
Description: This package provides a framework to perform Non-negative
Matrix Factorization (NMF). It implements a set of already
published algorithms and seeding methods, and provides a
framework to test, develop and plug new/custom algorithms.
Author: Renaud Gaujoux
Maintainer: Renaud Gaujoux
NMF-0.2.4/NMF/R/fcnnls.R |only
NMF-0.3.1/NMF/DESCRIPTION | 13
NMF-0.3.1/NMF/NAMESPACE | 6
NMF-0.3.1/NMF/NEWS | 48
NMF-0.3.1/NMF/R/Bioc-layer.R | 14
NMF-0.3.1/NMF/R/NMF-class.R | 186
NMF-0.3.1/NMF/R/NMFOffset-class.R | 6
NMF-0.3.1/NMF/R/NMFSet-class.R | 86
NMF-0.3.1/NMF/R/NMFStrategy-class.R | 86
NMF-0.3.1/NMF/R/NMFStrategyFunction-class.R | 10
NMF-0.3.1/NMF/R/NMFStrategyIterative-class.R | 289
NMF-0.3.1/NMF/R/NMFfit-class.R | 38
NMF-0.3.1/NMF/R/lnmf.R | 7
NMF-0.3.1/NMF/R/nmf-package.R | 84
NMF-0.3.1/NMF/R/nmf.R | 672 +-
NMF-0.3.1/NMF/R/nndsvd.R | 2
NMF-0.3.1/NMF/R/options.R | 6
NMF-0.3.1/NMF/R/pe-nmf.R |only
NMF-0.3.1/NMF/R/registry.R | 21
NMF-0.3.1/NMF/R/seed.R | 7
NMF-0.3.1/NMF/R/snmf.R | 208
NMF-0.3.1/NMF/R/utils.R | 20
NMF-0.3.1/NMF/inst/doc/NMF-vignette.Rnw | 1844 +++--
NMF-0.3.1/NMF/inst/doc/NMF-vignette.pdf | 8802 +++++++++++++++++----------
NMF-0.3.1/NMF/inst/matlab |only
NMF-0.3.1/NMF/man/NMF-class.Rd | 46
NMF-0.3.1/NMF/man/NMF-defunct.Rd |only
NMF-0.3.1/NMF/man/NMF-deprecated.Rd | 8
NMF-0.3.1/NMF/man/NMF-internals.Rd | 3
NMF-0.3.1/NMF/man/NMF-utils.Rd | 59
NMF-0.3.1/NMF/man/NMFOffset-class.Rd | 6
NMF-0.3.1/NMF/man/NMFfit-class.Rd | 26
NMF-0.3.1/NMF/man/NMFns-class.Rd | 1
NMF-0.3.1/NMF/man/NMFstd-class.Rd | 3
NMF-0.3.1/NMF/man/nmf-methods.Rd | 198
NMF-0.3.1/NMF/man/nmfEstimateRank.Rd | 30
36 files changed, 8520 insertions(+), 4315 deletions(-)
Path: /cran/updated | permanent link
Title: Meta-Analysis for Correlations
Diff between MAc versions 1.0.1 dated 2010-02-06 and 1.0.2 dated 2010-02-08
More information about MAc at CRAN
Description: This is an integrated meta-analysis package for conducting
a research synthesis with correlational data. One of the unique
features of this package is in its integration of user-friendly
functions to complete all statistical steps involved in a meta-
analysis with correlations. It uses recommended procedures as
described in The Handbook of Research Synthesis and
Meta-Analysis (Cooper, Hedges, & Valentine, 2009).
Author: AC Del Re & William T. Hoyt
Maintainer: AC Del Re
DESCRIPTION | 24 ++++++++++++------------
R/MAc.R | 45 +++++++++++++++++++++++++++++++++++++++++++++
man/CatCompf.Rd | 11 +++++------
man/CatCompr.Rd | 10 +++++-----
man/CatModGraph.Rd | 8 ++++----
man/CatModf.Rd | 14 ++++++++------
man/CatModfQ.Rd | 10 ++++++----
man/CatModr.Rd | 2 +-
man/CatModrQ.Rd | 9 +++++----
man/ComplData.Rd | 12 +++++++-----
man/CorAtten.rd |only
man/ForestPlot.Rd | 9 +++++----
man/FunnelPlot.Rd | 8 ++++----
man/Kappa.Rd | 5 +++--
man/MAc-package.Rd | 38 ++++++++++++++++++++++----------------
man/MAreg1.Rd | 8 ++++----
man/MAreg2.Rd | 6 +++---
man/MAregGraph.Rd | 6 +++---
man/MetaR.Rd | 10 +++++++---
man/MultiModGraph.Rd | 12 +++++++-----
man/OmnibusES.Rd | 10 +++++-----
man/Rho_TU.Rd |only
man/r_from_d.Rd | 9 +++++----
man/r_from_d1.Rd | 4 ++--
man/r_from_t.Rd | 7 ++++---
man/r_to_z.Rd | 10 +++++-----
man/var_z.Rd | 8 ++++----
27 files changed, 181 insertions(+), 114 deletions(-)
Path: /cran/updated | permanent link
Title: Perform SQL Selects on R Data Frames
Diff between sqldf versions 0-3.2 dated 2010-02-01 and 0-3.3 dated 2010-02-07
More information about sqldf at CRAN
Description: Manipulate R data frames using SQL.
Author: G. Grothendieck
Maintainer: G. Grothendieck
DESCRIPTION | 8 ++++----
R/sqldf.R | 49 ++++++++++++++++++++++++++++++++++++++-----------
inst/NEWS | 13 +++++++++++++
inst/THANKS | 2 ++
man/sqldf.Rd | 4 ++++
5 files changed, 61 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
More information about stam at CRAN
Path: /cran/new | permanent link
Title: H2 Database
Diff between RH2 versions 0.1-0 dated 2010-02-01 and 0.1-1 dated 2010-02-07
More information about RH2 at CRAN
Description: DBI interface to H2 database. H2 version 1.2.128 is
included.
Author: G. Grothendieck. Author of H2 is Thomas Mueller.
Maintainer: G. Grothendieck
RH2-0.1-0/RH2/inst/h2.jar |only
RH2-0.1-1/RH2/DESCRIPTION | 8 ++++----
RH2-0.1-1/RH2/NEWS |only
RH2-0.1-1/RH2/R/class.R | 3 +--
RH2-0.1-1/RH2/inst/java |only
RH2-0.1-1/RH2/man/H2.Rd | 4 ----
6 files changed, 5 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Title: Approximate Gaussian processes using the Fourier basis
Diff between spectralGP versions 1.2 dated 2009-02-12 and 1.3 dated 2010-02-07
More information about spectralGP at CRAN
Description: Routines for creating, manipulating, and performing
Bayesian inference about Gaussian processes in one and two
dimensions using the Fourier basis approximation: simulation
and plotting of processes, calculation of coefficient
variances, calculation of process density, coefficient
proposals (for use in MCMC). It uses R environments to store
GP objects as references/pointers.
Author: Chris Paciorek
Maintainer: Chris Paciorek
DESCRIPTION | 24 +++++++++++++-----------
R/onLoad.R | 2 +-
inst/CITATION | 10 ++++++----
man/Gibbs.sample.coeff.gp.Rd | 2 +-
man/Hastings.coeff.gp.Rd | 2 +-
man/add.blocks.gp.Rd | 5 +----
man/calc.variances.gp.Rd | 7 +------
man/change.param.gp.Rd | 8 +++-----
man/copy.gp.Rd | 2 +-
man/expand.gpgrid.gp.Rd | 5 +----
man/getgrid.gp.Rd | 5 +----
man/gp.Rd | 6 ++++--
man/image.plot.Rd | 8 +++-----
man/lines.gp.Rd | 5 +----
man/logdensity.gp.Rd | 5 +----
man/lonlat2xy.Rd | 9 ++++-----
man/matern.specdens.Rd | 7 ++-----
man/new.mapping.Rd | 6 +-----
man/plot.gp.Rd | 5 +----
man/points.gp.Rd | 5 +----
man/predict.gp.Rd | 7 +------
man/print.gp.Rd | 2 +-
man/propose.coeff.gp.Rd | 6 ++----
man/simulate.gp.Rd | 6 +-----
man/spectralGP.Rd | 5 -----
man/updateprocess.gp.Rd | 5 +----
man/xy2unit.Rd | 9 ++++-----
man/zero.coeff.gp.Rd | 7 +------
28 files changed, 59 insertions(+), 116 deletions(-)
Path: /cran/updated | permanent link
Title: Sequential (or Safe) Implementation of Monte Carlo tests with
uniformly bounded resampling risk.
Diff between simctest versions 1.0-0 dated 2009-05-28 and 1.0-1 dated 2010-02-07
More information about simctest at CRAN
Description: Efficient computation of p-values for Monte Carlo tests,
e.g. bootstrap tests. The algorithm provides a uniform bound on
the resampling risk.
Author: Axel Gandy
Maintainer: Axel Gandy
DESCRIPTION | 10 +++++-----
inst/CITATION | 9 +++++----
inst/doc/simctest-intro.pdf |binary
man/confint-methods.Rd | 2 +-
man/getL-methods.Rd | 2 +-
man/getU-methods.Rd | 2 +-
man/getalgprecomp.Rd | 2 +-
man/run-methods.Rd | 4 ++--
man/sampalgPrecomp-class.Rd | 2 +-
man/sampalgontheflyres-class.Rd | 1 -
man/simctest.Rd | 4 ++--
11 files changed, 19 insertions(+), 19 deletions(-)
Path: /cran/updated | permanent link
Title: Statistics for psychiatric research
Diff between rpsychi versions 0.0 dated 2010-02-05 and 0.1 dated 2010-02-07
More information about rpsychi at CRAN
Description: The rpsychi offers a number of functions for psychiatry,
psychiatric nursing, clinical psychology. Functions are
primarily for statistical significance testing using published
work. For example, you can conduct a factorial analysis of
variance (ANOVA), which requires only the mean, standard
deviation, and sample size for each cell, rather than the
individual data. This package covers fundamental statistical
tests such as t-test, chi-square test, analysis of variance,
and multiple regression analysis. With some exceptions, you can
obtain effect size and its confidence interval. These functions
help you to obtain effect size from published work, and then to
conduct a priori power analysis or meta-analysis, even if a
researcher do not report effect size in a published work.
Author: Yasuyuki Okumura
Maintainer: Yasuyuki Okumura
DESCRIPTION | 8 ++++----
NEWS |only
R/dep.t.test.R | 7 ++++---
R/ind.twoway.second.R |only
R/power.f2.R |only
man/dep.t.test.Rd | 7 +++++--
man/ind.twoway.second.Rd |only
man/power.f.Rd | 3 +--
man/power.f2.Rd |only
man/rpsychi-package.Rd | 9 ++++++---
10 files changed, 20 insertions(+), 14 deletions(-)
Path: /cran/updated | permanent link
Title: A graphical user interface for data mining in R using GTK
Diff between rattle versions 2.5.20 dated 2010-01-31 and 2.5.21 dated 2010-02-07
More information about rattle at CRAN
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
Author: Graham Williams
Maintainer: Graham Williams
DESCRIPTION | 12 +++++------
R/evaluate.R | 28 ++++++++++++++++++--------
R/explore.R | 42 ++++++++++++++++++++++++++++------------
R/hclust.R | 52 +++++++++++++++++++++++++-------------------------
R/rattle.R | 12 +++++------
R/rpart.R | 14 ++++++-------
data/weather.RData |binary
data/weatherAUS.RData |binary
data/wine.RData |only
inst/ChangeLog | 19 ++++++++++++++++++
inst/INSTALL |only
man/weather.Rd | 25 +++++++++++++++---------
man/wine.Rd |only
13 files changed, 130 insertions(+), 74 deletions(-)
Path: /cran/updated | permanent link
Title: Decimal log plotting in two and three dimensions
Diff between log10 versions 0.1.0-01 dated 2009-11-26 and 0.1.0-03 dated 2010-02-07
More information about log10 at CRAN
Description: Provides a range of function for 10-log plotting
Author: Timothee Poisot
Maintainer: Timothee Poisot
DESCRIPTION | 16 ++++++++--------
1 file changed, 8 insertions(+), 8 deletions(-)
Path: /cran/updated | permanent link
Title: Inequality constrained inference in linear normal situations
Diff between ic.infer versions 1.1-1 dated 2009-12-20 and 1.1-2 dated 2010-02-07
More information about ic.infer at CRAN
Description: This package implements parameter estimation in normal
(linear) models under linear equality and inequality
constraints and implements normal likelihood ratio tests
involving inequality-constrained hypotheses. For
inequality-constrained linear models, averaging over R-squared
for different orderings of regressors is also included.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
DESCRIPTION | 8 ++++----
R/summary.ict.R | 6 +++---
R/summary.orlm.R | 8 ++++----
inst/CITATION |only
inst/NEWS | 5 +++++
inst/doc |only
man/ic.infer-package.rd | 14 +++++++++++---
7 files changed, 27 insertions(+), 14 deletions(-)
Path: /cran/updated | permanent link
Title: Model selection and multimodel inference based on (Q)AIC(c)
Diff between AICcmodavg versions 1.05 dated 2009-12-06 and 1.06 dated 2010-02-07
More information about AICcmodavg at CRAN
Description: This package includes functions to create model selection
tables based on Akaike's information criterion (AIC) and the
second-order AIC (AICc), as well as their quasi-likelihood
counterparts (QAIC, QAICc). Tables are printed with delta AIC
and Akaike weights. The package also includes functions to
conduct model averaging (multimodel inference) for a given
parameter of interest or predicted values. Other handy
functions enable the computation of relative variable
importance, evidence ratios, and confidence sets for the best
model. The present version works with linear models ('lm'
class), generalized linear models ('glm' class), linear models
fit by generalized least squares ('gls' class), linear mixed
models ('lme' class), multinomial and ordinal logistic
regressions ('multinom' and 'polr' classes).
Author: Marc J. Mazerolle
Maintainer: Marc J. Mazerolle
DESCRIPTION | 11 -
R/AICc.R | 38 ++--
R/AICc.glm.R | 3
R/AICc.gls.R |only
R/aictab.R | 29 ++-
R/aictab.glm.R | 5
R/aictab.gls.R |only
R/aictab.lme.R | 5
R/aictab.mult.R | 5
R/aictab.polr.R | 5
R/confset.R | 5
R/evidence.R | 31 ++-
R/importance.R | 4
R/modavg.R | 38 ++--
R/modavg.glm.R | 2
R/modavg.gls.R |only
R/modavg.lme.R | 7
R/modavgpred.R | 433 +++++++++++++++++++++++++++++++---------------
R/predictSE.lme.r |only
inst/NEWS |only
man/AICc.Rd | 42 ++--
man/AICcmodavg-package.Rd | 13 -
man/aictab.Rd | 36 ++-
man/confset.Rd | 9
man/evidence.Rd | 52 +++--
man/importance.Rd | 10 -
man/modavg.Rd | 37 ++-
man/modavgpred.Rd | 49 +++--
man/predictSE.lme.Rd |only
29 files changed, 585 insertions(+), 284 deletions(-)
Path: /cran/updated | permanent link
Title: Distance and Similarity Measures
Diff between proxy versions 0.4-5 dated 2009-11-05 and 0.4-6 dated 2010-02-06
More information about proxy at CRAN
Description: Provides an extensible framework for the effcient
calculation of auto- and cross-proximities, along with
implementations of the most popular ones.
Author: David Meyer and Christian Buchta
Maintainer: David Meyer
DESCRIPTION | 8 ++++----
NEWS | 8 ++++++++
R/util.R | 10 +++++++---
inst/NEWS | 8 ++++++++
inst/doc/overview.pdf |binary
5 files changed, 27 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
More information about pamctdp at CRAN
Path: /cran/new | permanent link
Title: WA, WA-PLS, MW for paleolimnology
Diff between paltran versions 1.2-0 dated 2009-07-18 and 1.3-0 dated 2010-02-06
More information about paltran at CRAN
Description: This package contains functions for paleolimnology -
wa-regression (see also package analogue by G. Simpson!),
wa-pls and the mowing-window approch. The function palplot
allows a first plot of the data including a trend analysis. The
mtf function is just a first test version.
Author: Sven Adler
Maintainer: Sven Adler
paltran-1.2-0/paltran/R/mft.R |only
paltran-1.2-0/paltran/man/mft.Rd |only
paltran-1.3-0/paltran/DESCRIPTION | 10 -
paltran-1.3-0/paltran/R/mtf.R |only
paltran-1.3-0/paltran/R/mw.R | 237 +++++++++++++++++++++++++--
paltran-1.3-0/paltran/R/palplot.R | 1
paltran-1.3-0/paltran/R/rand.test.R |only
paltran-1.3-0/paltran/R/wa.R | 43 ++--
paltran-1.3-0/paltran/R/wapls.R | 41 ++--
paltran-1.3-0/paltran/man/mtf.Rd |only
paltran-1.3-0/paltran/man/mw.Rd | 31 ++-
paltran-1.3-0/paltran/man/paltran-package.Rd | 7
paltran-1.3-0/paltran/man/rand.test.Rd |only
paltran-1.3-0/paltran/man/wa.Rd | 9 -
14 files changed, 311 insertions(+), 68 deletions(-)
Path: /cran/updated | permanent link
Title: Object Oriented Statistical Programming
Diff between oosp versions 0.3.1 dated 2010-01-29 and 0.3.2 dated 2010-02-06
More information about oosp at CRAN
Description: A platform and collection of tools for, object oriented
statistical programming, with special emphasis on R/S3 language
extensions, including extensions for environment-based
programming and object-functional programming. Note that many
of the features in this package are experimental.
Author: Charlotte Maia
Maintainer: Charlotte Maia
DESCRIPTION | 12 ++++++------
inst/doc/oosp1.pdf |binary
inst/doc/oosp1.rnw | 4 ++--
inst/doc/oosp2.pdf |binary
inst/doc/oosp2.rnw | 6 +++---
inst/doc/oosp3.pdf |binary
inst/doc/oosp3.rnw | 4 ++--
7 files changed, 13 insertions(+), 13 deletions(-)
Path: /cran/updated | permanent link
Title: Multivariate partitioning
Diff between mvpart versions 1.2-6 dated 2007-10-12 and 1.3-0 dated 2010-02-06
More information about mvpart at CRAN
Description: Multivariate regression trees
Author: rpart by Terry M Therneau and Beth Atkinson
Maintainer: Glenn De'ath
mvpart-1.2-6/mvpart/LICENCE |only
mvpart-1.3-0/mvpart/DESCRIPTION | 31 ++++++-----
mvpart-1.3-0/mvpart/INDEX | 81 +++++++++++++++----------------
mvpart-1.3-0/mvpart/LICENSE |only
mvpart-1.3-0/mvpart/R/mvpart.R | 2
mvpart-1.3-0/mvpart/R/rpart.pca.R | 4 -
mvpart-1.3-0/mvpart/ToDos |only
mvpart-1.3-0/mvpart/man/cmds.diss.Rd | 2
mvpart-1.3-0/mvpart/man/gdist.Rd | 4 -
mvpart-1.3-0/mvpart/man/mvpart.Rd | 2
mvpart-1.3-0/mvpart/man/predict.rpart.Rd | 2
mvpart-1.3-0/mvpart/man/rpart.Rd | 4 -
mvpart-1.3-0/mvpart/man/rpart.control.Rd | 2
mvpart-1.3-0/mvpart/man/rpart.pca.Rd | 4 -
mvpart-1.3-0/mvpart/man/trclcomp.Rd | 5 -
15 files changed, 73 insertions(+), 70 deletions(-)
Path: /cran/updated | permanent link
Title: Export R objects to several markup languages
Diff between ascii versions 0.4-2 dated 2009-11-29 and 0.5 dated 2010-02-06
More information about ascii at CRAN
Description: Coerce R object to asciidoc, txt2tags, restructuredText or
org syntax. Package comes with a set of drivers for Sweave.
Author: David Hajage
Maintainer: David Hajage
DESCRIPTION | 6 -
NAMESPACE | 2
NEWS | 10 ++
R/RweaveAsciidoc.r | 2
R/RweaveOrg.r | 4 -
R/RweaveReST.r | 2
R/RweaveT2t.r | 2
R/RweaveTextile.r |only
R/SweaveAscii.r | 3
R/misc.r | 78 +++++++++++++++-----
R/print.r | 1
R/show.r | 192 +++++++++++++++++++++++++++++++++++++++++----------
man/RweaveTextile.Rd |only
man/Textile.Rd |only
man/ascii.Rd | 2
man/print.ascii.Rd | 7 +
16 files changed, 245 insertions(+), 66 deletions(-)
Path: /cran/updated | permanent link
Title: Additive Models for Business Applications
Diff between amba versions 0.2.0 dated 2009-11-20 and 0.2.1 dated 2010-02-06
More information about amba at CRAN
Description: An incomplete package for using additive models in
business. The models (currently) emphasize semiparametric
models (predictors), interpretation and missing explanatory
values.
Author: Charlotte Maia
Maintainer: Charlotte Maia
DESCRIPTION | 20 +++++++++-----------
R/estimators.r | 1 +
inst/doc/amba.pdf |binary
inst/doc/amba.rnw | 4 ++--
man/Estimation.Rd | 21 +++++++++++----------
man/amba.Rd | 5 +++--
man/ambax.Rd | 3 ++-
man/categorical.Rd | 9 +++++----
man/clean.Rd | 5 +++--
man/eqnp.Rd | 9 +++++----
man/evaluate.amba.Rd | 7 ++++---
man/evaluate.term.Rd | 3 ++-
man/fit.term.Rd | 9 +++++----
man/gf.Rd | 15 ++++++++-------
man/interaction.Rd | 13 +++++++------
man/interceptadj.Rd | 7 ++++---
man/linear.Rd | 15 ++++++++-------
man/linear.design.Rd | 7 ++++---
man/linear.estimate.Rd | 3 ++-
man/linear.expand.Rd | 7 ++++---
man/linear.matrix.Rd | 5 +++--
man/mmba.Rd | 13 +++++++------
man/mutate.term.Rd | 7 ++++---
man/plots.Rd | 9 +++++----
man/polynomial.Rd | 11 ++++++-----
man/rawestimate.Rd | 5 +++--
man/reset.Rd | 5 +++--
man/seq.term.Rd | 6 +++---
man/setestimation.Rd | 9 +++++----
man/smooth.Rd | 7 ++++---
man/smooth.design.Rd | 13 +++++++------
man/smooth.estimate.Rd | 11 ++++++-----
man/summary.term.Rd | 11 ++++++-----
man/term.Rd | 3 ++-
man/term.label.Rd | 3 ++-
man/term.pcd.Rd | 7 ++++---
man/term.pump.Rd | 7 ++++---
man/term.validate.Rd | 3 ++-
man/termlist.Rd | 13 +++++++------
man/validex.Rd | 3 ++-
man/wf.Rd | 7 ++++---
41 files changed, 178 insertions(+), 143 deletions(-)
Path: /cran/updated | permanent link
More information about PropCIs at CRAN
Path: /cran/new | permanent link
Title: Meta-Analysis for Correlations
Diff between MAc versions 1.0 dated 2010-02-04 and 1.0.1 dated 2010-02-06
More information about MAc at CRAN
Description: This is an integrated meta-analysis package for conducting
a research synthesis with correlations. The unique feature of
this package is that there are user-friendly functions for
completing all statistical steps involved in a meta-analysis.
It uses recommended procedures as described in Cooper, Hedges,
& Valentine's Handbook of Research Synthesis and Meta-Analysis
(2009).
Author: AC Del Re & William T. Hoyt University of Wisconsin-Madison
Maintainer: AC Del Re
MAc-1.0.1/MAc/DESCRIPTION | 21 +++++----
MAc-1.0.1/MAc/R/MAc.R | 79 +++++++++++++++++++++++++++++++++++--
MAc-1.0.1/MAc/man/CatCompf.Rd | 6 +-
MAc-1.0.1/MAc/man/CatCompr.Rd | 4 -
MAc-1.0.1/MAc/man/CatModGraph.Rd | 6 +-
MAc-1.0.1/MAc/man/CatModfQ.Rd | 2
MAc-1.0.1/MAc/man/CatModr.Rd | 30 +++++++++++++-
MAc-1.0.1/MAc/man/CatModrQ.Rd | 2
MAc-1.0.1/MAc/man/ComplData.Rd | 3 -
MAc-1.0.1/MAc/man/ForestPlot.Rd | 2
MAc-1.0.1/MAc/man/FunnelPlot.Rd | 4 -
MAc-1.0.1/MAc/man/Kappa.Rd | 2
MAc-1.0.1/MAc/man/MAc-package.Rd | 29 ++++++-------
MAc-1.0.1/MAc/man/MAreg1.Rd | 4 -
MAc-1.0.1/MAc/man/MAreg2.Rd | 11 +++--
MAc-1.0.1/MAc/man/MAregGraph.Rd | 9 ++--
MAc-1.0.1/MAc/man/MetaR.Rd | 2
MAc-1.0.1/MAc/man/MultiModGraph.Rd |only
MAc-1.0.1/MAc/man/OmnibusES.Rd | 4 -
MAc-1.0.1/MAc/man/qrs.Rd |only
MAc-1.0/MAc/man/qr.Rd |only
21 files changed, 163 insertions(+), 57 deletions(-)
Path: /cran/updated | permanent link
Title: Cox models by likelihood based boosting for a single survival
endpoint or competing risks
Diff between CoxBoost versions 1.1 dated 2009-02-15 and 1.2 dated 2010-02-06
More information about CoxBoost at CRAN
Description: This package provides routines for fitting Cox models by
likelihood based boosting for a single endpoint or in presence
of competing risks
Author: Harald Binder
Maintainer: Harald Binder
DESCRIPTION | 13 ++++--
NAMESPACE | 2 -
R/CoxBoost.R | 89 +++++++++++++++++++++++++++++++++------------
R/estimPVal.R |only
changeLog | 12 ++++++
man/CoxBoost.Rd | 5 +-
man/estimPVal.Rd |only
man/optimStepSizeFactor.Rd | 2 -
src/find_best.c | 31 +++++++++++++++
9 files changed, 123 insertions(+), 31 deletions(-)
Path: /cran/updated | permanent link
Title: An interface for creating GUIs modeled in part after traits UI
module for python.
Diff between traitr versions 0.4 dated 2010-02-03 and 0.5 dated 2010-02-05
More information about traitr at CRAN
Description: An interface for creating GUIs modeled in part after the
traits UI module for python. The basic design takes advantage
of the model-view-controller design pattern. The interface
makes basic dialogs quite easy to produce.
Author: John Verzani
Maintainer: John Verzani
ChangeLog | 5 +++++
DESCRIPTION | 6 +++---
NEWS | 8 ++++++++
R/items.R | 13 +++++++++----
inst/doc/traitr.pdf |binary
man/choiceItem.Rd | 4 ++--
6 files changed, 27 insertions(+), 9 deletions(-)
Path: /cran/updated | permanent link
Title: Racing methods for the selection of the best
Diff between race versions 0.1.56 dated 2005-04-01 and 0.1.58 dated 2010-02-05
More information about race at CRAN
Description: Implementation of some racing methods for the empirical
selection of the best. If the R package `rpvm' is installed
(and if PVM is available, properly configured, and
initialized), the evaluation of the candidates are performed in
parallel on different hosts.
Author: Mauro Birattari
Maintainer: Mauro Birattari
race-0.1.56/race/INDEX |only
race-0.1.56/race/TODO |only
race-0.1.56/race/debian |only
race-0.1.58/race/DESCRIPTION | 19 +++++++++++--------
race-0.1.58/race/R/race.R | 8 ++++----
race-0.1.58/race/inst/examples/example-wrapper.R | 2 --
race-0.1.58/race/inst/slave/srace.sh | 2 --
race-0.1.58/race/man/race.Rd | 2 --
race-0.1.58/race/man/race.describe.Rd | 18 ++++++------------
race-0.1.58/race/man/race.info.Rd | 16 +++++-----------
race-0.1.58/race/man/race.init.Rd | 20 +++++++-------------
race-0.1.58/race/man/race.wrapper.Rd | 15 +++++----------
12 files changed, 38 insertions(+), 64 deletions(-)
Path: /cran/updated | permanent link
Title: Dive analysis and calibration
Diff between diveMove versions 0.9.6 dated 2009-10-21 and 0.9.7 dated 2010-02-05
More information about diveMove at CRAN
Description: Utilities to represent, visualize, filter, analyse, and
summarize time-depth recorder (TDR) data. Miscellaneous
functions for handling location data are also provided.
Author: Sebastian P. Luque
Maintainer: Sebastian P. Luque
ChangeLog | 45
DESCRIPTION | 15
NAMESPACE | 2
R/AllClass.R | 2
R/AllGenerics.R | 2
R/AllMethod.R | 2
R/austFilter.R | 2
R/bouts.R | 2
R/calibrate.R | 2
R/detDive.R | 2
R/detPhase.R | 2
R/distSpeed.R | 2
R/diveStats.R | 2
R/oneDiveStats.R | 2
R/plotTD.R | 2
R/readLocs.R | 2
R/readTDR.R | 12
R/speedStats.R | 2
R/stampDive.R | 2
R/zoc.R | 2
R/zzz.R | 2
README | 9
data/dives.csv |68400 +++++++++++++++++++++---------------------
data/sealLocs.csv | 740
inst/doc/Makefile | 2
inst/doc/diveMove.Rnw | 14
inst/doc/diveMove.pdf | 6279 ++-
man/TDR-accessors.Rd | 2
man/TDR-class.Rd | 2
man/TDRcalibrate-accessors.Rd | 2
man/TDRcalibrate-class.Rd | 2
man/austFilter.Rd | 4
man/bout-methods.Rd | 2
man/bout-misc.Rd | 2
man/bouts2MLE.Rd | 2
man/bouts2NLS.Rd | 2
man/calibrateDepth.Rd | 2
man/calibrateSpeed.Rd | 2
man/detDive-internal.Rd | 2
man/detPhase-internal.Rd | 2
man/distSpeed.Rd | 4
man/diveMove-internal.Rd | 2
man/diveMove-package.Rd | 5
man/diveStats.Rd | 2
man/dives.Rd | 14
man/extractDive-methods.Rd | 2
man/labDive-internal.Rd | 2
man/plotTDR-methods.Rd | 2
man/readLocs.Rd | 8
man/readTDR.Rd | 14
man/rqPlot.Rd | 2
man/sealLocs.Rd | 9
man/timeBudget-methods.Rd | 2
man/zoc.Rd | 2
tests/calibrations.R | 9
tests/class-tests.R | 13
tests/final-stats.R | 12
57 files changed, 38070 insertions(+), 37614 deletions(-)
Path: /cran/updated | permanent link
Title: Benchmark dose analysis for dose-response data
Diff between bmd versions 0.1 dated 2008-06-05 and 0.2 dated 2010-02-05
More information about bmd at CRAN
Description: Benchmark dose analysis for continuous and quantal
dose-response data.
Author: Christian Ritz
Maintainer: Christian Ritz
DESCRIPTION | 29 ++++++++++++++++-------------
inst/CITATION | 7 ++++---
2 files changed, 20 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: R interface to the yacas computer algebra system
Diff between Ryacas versions 0.2-9 dated 2009-03-03 and 0.2-10 dated 2010-02-05
More information about Ryacas at CRAN
Description: An interface to the yacas computer algebra system.
Author: Rob Goedman
Maintainer: G. Grothendieck
DESCRIPTION | 30
INSTALL |only
R/Num.R |only
R/OpenMath2R.R | 3
R/yacas.R | 7
inst/NEWS | 8
inst/doc/Ryacas.pdf | 2613 ++++++++++++++++++++++++++++------------------------
7 files changed, 1446 insertions(+), 1215 deletions(-)
Path: /cran/updated | permanent link
More information about RFinanceYJ at CRAN
Path: /cran/new | permanent link
Title: Sparse and Dense Matrix Classes and Methods
Diff between Matrix versions 0.999375-36 dated 2010-02-04 and 0.999375-37 dated 2010-02-05
More information about Matrix at CRAN
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
Author: Douglas Bates
Maintainer: Doug and Martin
ChangeLog | 12
DESCRIPTION | 8
R/Csparse.R | 44 +--
TODO | 2
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 587 ++++++++++++++++++++++-----------------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/test-tools.R | 28 +-
src/Csparse.c | 22 +
tests/indexing.R | 29 +-
tests/indexing.Rout.save | 429 ++++++++++++++++++--------------
13 files changed, 629 insertions(+), 532 deletions(-)
Path: /cran/updated | permanent link
Title: Geographically weighted regression
Diff between spgwr versions 0.6-2 dated 2009-06-26 and 0.6-4 dated 2010-02-05
More information about spgwr at CRAN
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Author: Roger Bivand and Danlin Yu, contributions by Tomoki Nakaya,
tricube function based on a contribution by Miquel-Angel
Garcia-Lopez
Maintainer: Roger Bivand
ChangeLog | 13 +++++++++++--
DESCRIPTION | 14 ++++++++------
INDEX | 1 +
R/gwr.R | 12 ++++++------
R/tricube.R |only
inst/ChangeLog | 22 ++++++++++++++++++++--
man/gwr.tricube.Rd |only
7 files changed, 46 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: Spatial dependence: weighting schemes, statistics and models
Diff between spdep versions 0.4-56 dated 2009-12-18 and 0.4-58 dated 2010-02-05
More information about spdep at CRAN
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tesselations, for summarising these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G
and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
impact measures for lag models, weighted and unweighted SAR and
CAR spatial regression models, semi-parametric and Moran
eigenvector spatial filtering, GM SAR error models, and
generalized spatial two stage least squares models.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 15
DESCRIPTION | 20 -
INDEX | 5
NAMESPACE | 15
R/globalG.R | 3
R/mess.R |only
R/summary.spsarlm.R | 4
inst/ChangeLog | 15
inst/doc/CO69.pdf |binary
inst/doc/sids.pdf | 964 +++++++++++++++++++++++++---------------------------
man/globalG.test.Rd | 6
man/lagmess.Rd |only
man/skater.Rd | 2
man/ssw.Rd | 2
14 files changed, 542 insertions(+), 509 deletions(-)
Path: /cran/updated | permanent link
More information about rpsychi at CRAN
Path: /cran/new | permanent link
Title: Control Charts, Capability and Distribution Identification
Diff between qAnalyst versions 0.6.1 dated 2010-01-27 and 0.6.2 dated 2010-02-05
More information about qAnalyst at CRAN
Description: qAnalyst performs: control charts for variables and
attributes according to Douglas C. Montgomery Introduction to
Statistical Quality Control book, Capability analysis for
normal and non - normal distributions and Distributions
Identification
Author: Andrea Spano'
Maintainer: Andrea Spano'
DESCRIPTION | 8 -
R/plot.spc.R | 4
R/spc.R | 9 -
R/testFun.R | 335 +++++++++++++++++++++++----------------------
README | 5
man/brakeCap.Rd | 3
man/capabilityNormal.Rd | 6
man/capabilityNotNormal.Rd | 6
man/probplot.Rd | 6
man/qAnalyst-package.Rd | 33 ++--
man/spc.Rd | 65 ++++----
man/summary.capability.Rd | 5
man/testFun.Rd | 36 ++--
man/toys.Rd | 3
man/tubes.Rd | 3
15 files changed, 287 insertions(+), 240 deletions(-)
Path: /cran/updated | permanent link
More information about dae at CRAN
Path: /cran/new | permanent link
Title: Estimation of attributable and partial attributable risks (AR
and PAR) and visualization of attributable risks from
case-control data
Diff between pARccs versions 0.2-1 dated 2009-11-26 and 0.2-2 dated 2010-02-05
More information about pARccs at CRAN
Description: Functions to estimate (partial) attributable risks from
case-control data with corresponding percentile or BCa
confidence intervals; Visualization of attributable riks
Author: Christiane Raemsch
Maintainer: Christiane Raemsch
DESCRIPTION | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
Path: /cran/updated | permanent link
Title: Analysis of Mark-Recapture data
Diff between mra versions 2.3 dated 2010-02-03 and 2.4 dated 2010-02-05
More information about mra at CRAN
Description: Analysis of mark-recapture data using covariates. Models
implemented: CJS open population; Huggin's closed population.
Author: Trent McDonald
Maintainer: Trent McDonald
DESCRIPTION | 8 ++++----
R/F.cjs.estim.R | 3 ++-
man/F.fit.table.Rd | 19 +++++++++----------
src/Mrawin.f90 | 2 +-
4 files changed, 16 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: Simple key-value database
Diff between filehash versions 2.0-2 dated 2010-01-27 and 2.1 dated 2010-02-05
More information about filehash at CRAN
Description: Simple key-value database
Author: Roger D. Peng
Maintainer: Roger D. Peng
DESCRIPTION | 8 ++++----
R/filehash-DB1.R | 6 ------
R/filehash-RDS.R | 8 ++++++++
R/filehash.R | 15 ++++++++++-----
inst/doc/filehash.pdf |binary
man/filehash-class.Rd | 4 ++--
6 files changed, 24 insertions(+), 17 deletions(-)
Path: /cran/updated | permanent link
Title: Functional Data Analysis
Diff between fda versions 2.2.0 dated 2009-11-12 and 2.2.1 dated 2010-02-05
More information about fda at CRAN
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer. They were
ported from earlier versions in Matlab and S-PLUS. An
introduction appears in Ramsay, J. O., Hooker, Giles, and
Graves, Spencer (2009) Functional Data Analysis with R and
Matlab (Springer). The package includes data sets and script
files working many examples including all but one of the 76
figures in this latter book.
Author: J. O. Ramsay
Maintainer: J. O. Ramsay
DESCRIPTION | 10 ++--
R/fRegress.R | 81 ++++++++++++++++++++++++++++++++++++---
R/fRegressArgCheck.R | 9 +---
R/fd.R | 105 +++++++++++++++++++++++++++------------------------
R/inprod.R | 8 +--
5 files changed, 144 insertions(+), 69 deletions(-)
Path: /cran/updated | permanent link
Title: Bayesian Mixture Models with JAGS
Diff between bayesmix versions 0.6-1 dated 2009-06-14 and 0.7-0 dated 2010-02-05
More information about bayesmix at CRAN
Description: Bayesian mixture models of univariate Gaussian
distributions using JAGS
Author: Bettina Gruen
Maintainer: Bettina Gruen
bayesmix-0.6-1/bayesmix/R/AAA.R |only
bayesmix-0.6-1/bayesmix/R/JAGScontrol.R |only
bayesmix-0.6-1/bayesmix/R/haveJags.R |only
bayesmix-0.6-1/bayesmix/man/JAGSread.Rd |only
bayesmix-0.6-1/bayesmix/man/JAGSsetup.Rd |only
bayesmix-0.6-1/bayesmix/man/haveJAGS.Rd |only
bayesmix-0.7-0/bayesmix/DESCRIPTION | 15 +--
bayesmix-0.7-0/bayesmix/NAMESPACE | 5 -
bayesmix-0.7-0/bayesmix/NEWS | 5 +
bayesmix-0.7-0/bayesmix/R/BMMmodel.R | 4
bayesmix-0.7-0/bayesmix/R/BMMpriors.R | 2
bayesmix-0.7-0/bayesmix/R/Inits.R | 11 --
bayesmix-0.7-0/bayesmix/R/JAGScall.R | 72 ++++++-----------
bayesmix-0.7-0/bayesmix/R/JAGSrun.R | 89 ++++++++--------------
bayesmix-0.7-0/bayesmix/R/Sort.R | 15 +--
bayesmix-0.7-0/bayesmix/R/plots.R | 30 +++----
bayesmix-0.7-0/bayesmix/R/randomPermutation.R | 4
bayesmix-0.7-0/bayesmix/man/BMMmodel.Rd | 21 ++---
bayesmix-0.7-0/bayesmix/man/BMMposteriori.Rd | 3
bayesmix-0.7-0/bayesmix/man/BMMpriors.Rd | 4
bayesmix-0.7-0/bayesmix/man/JAGScall.Rd | 20 ++--
bayesmix-0.7-0/bayesmix/man/JAGScontrol.Rd | 38 +++------
bayesmix-0.7-0/bayesmix/man/JAGSrun.Rd | 37 +++------
bayesmix-0.7-0/bayesmix/man/darwin.Rd | 6 -
bayesmix-0.7-0/bayesmix/man/fish.Rd | 2
bayesmix-0.7-0/bayesmix/man/inits.Rd | 4
bayesmix-0.7-0/bayesmix/man/plot.BMMposteriori.Rd | 2
bayesmix-0.7-0/bayesmix/man/plot.jags.Rd | 5 -
28 files changed, 166 insertions(+), 228 deletions(-)
Path: /cran/updated | permanent link
Title: FunctSNP - SNP annotation data methods and species specific
database builder
Diff between FunctSNP versions 1.0-1 dated 2010-01-19 and 1.0-2 dated 2010-02-05
More information about FunctSNP at CRAN
Description: This package provides functions to query species-specific
annotation databases. The main use of the package is to
associate SNPs to functional information. Functions are also
provided to download or build local databases from public
repositories.
Author: S. J. Goodswen with contributions from N. S. Watson-Haigh, H.
N. Kadarmideen and C. Gondro
Maintainer: S. J. Goodswen
FunctSNP-1.0-1/FunctSNP/BinaryFiles |only
FunctSNP-1.0-1/FunctSNP/inst/dbAutoMaker/Programs/linux_sqlite3.exe |only
FunctSNP-1.0-1/FunctSNP/inst/dbAutoMaker/Programs/sqlite3.exe |only
FunctSNP-1.0-1/FunctSNP/inst/dbAutoMaker/Programs/win_sqlite3.exe |only
FunctSNP-1.0-2/FunctSNP/DESCRIPTION | 10 +++++-----
FunctSNP-1.0-2/FunctSNP/inst/dbAutoMaker/Admin/startup.pl | 10 +++++-----
FunctSNP-1.0-2/FunctSNP/src |only
7 files changed, 10 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
More information about ipw at CRAN
Path: /cran/new | permanent link
Title: Sparse and Dense Matrix Classes and Methods
Diff between Matrix versions 0.999375-35 dated 2010-02-03 and 0.999375-36 dated 2010-02-04
More information about Matrix at CRAN
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
Author: Douglas Bates
Maintainer: Doug and Martin
ChangeLog | 15 +
DESCRIPTION | 8
R/Csparse.R | 10
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 593 ++++++++++++++++++++++-----------------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf | 258 +++++++++----------
tests/indexing.R | 9
tests/indexing.Rout.save | 16 -
10 files changed, 461 insertions(+), 448 deletions(-)
Path: /cran/updated | permanent link
Title: Demand Analysis with the Almost Ideal Demand System (AIDS)
Diff between micEconAids versions 0.6-0 dated 2009-12-28 and 0.6-2 dated 2010-02-04
More information about micEconAids at CRAN
Description: Demand analysis with the Almost Ideal Demand System (AIDS)
suggested by Deaton and Muellbauer (1980)
Author: Arne Henningsen
Maintainer: Arne Henningsen
DESCRIPTION | 8 ++++----
NEWS |only
R/aidsElas.R | 5 +++++
man/aidsElas.Rd | 9 +++++++++
4 files changed, 18 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Title: Dynamic Time Warping algorithms
Diff between dtw versions 1.14-1 dated 2009-08-14 and 1.14-3 dated 2010-02-04
More information about dtw at CRAN
Description: Comprehensive implementation of Dynamic Time Warping
algorithms in R. DTW finds the optimal (least cumulative
distance) mapping between two time series. All common DTW
variants are covered, including local and global constraints,
arbitrary timeseries lenghts, distance definitions, MVM, etc.
Package computes cumulative distance, warping functions, plots,
normalizations, etc.
Author: Toni Giorgino
Maintainer: Toni Giorgino
DESCRIPTION | 6 +++---
R/zzz.R | 2 +-
inst/CITATION | 9 +++++----
inst/ChangeLog | 6 ++++++
inst/doc/dtw.Rnw | 2 +-
inst/doc/dtw.pdf |binary
man/dtw-package.Rd | 2 +-
man/dtw.Rd | 8 ++++----
man/dtwDist.Rd | 8 ++++----
9 files changed, 25 insertions(+), 18 deletions(-)
Path: /cran/updated | permanent link
Title: A Package for Running jags from R
Diff between R2jags versions 0.01-30.01 dated 2009-12-22 and 0.02-01 dated 2010-02-04
More information about R2jags at CRAN
Description: Using this package to call jags from R.
Author: Yu-Sung Su
Maintainer: Yu-Sung Su
CHANGELOG | 6 ++++++
DESCRIPTION | 8 ++++----
R/as.bugs.array2.R | 14 +++++++-------
R/jags.sims.R | 4 +---
R/jags2.R | 13 +++++++++----
R/mcmc2bugs.R | 2 +-
6 files changed, 28 insertions(+), 19 deletions(-)
Path: /cran/updated | permanent link
Title: Processing and Simulating Genotype Data for Trio Logic
Regression
Diff between trio versions 1.0.4 dated 2010-02-03 and 1.0.7 dated 2010-02-04
More information about trio at CRAN
Description: Set up matched case-pseudo controls genotypes data for
trios in order to run trio logic regreesion, to impute missing
genotypes in trios, or to simulate case-parent trios with
disease risk dependent on SNP-SNP interaction. This package
furthermore contains functions for computing the values of
pairwise LD measures and for identifying LD blocks.
Author: Qing Li, Holger Schwender
Maintainer: Qing Li
trio-1.0.4/trio/INDEX |only
trio-1.0.4/trio/man/simuBkMap.Rd |only
trio-1.0.4/trio/man/step3way.Rd |only
trio-1.0.4/trio/man/trio.gen.err.Rd |only
trio-1.0.4/trio/man/trio.gen2.Rd |only
trio-1.0.4/trio/man/trio.ped.err.Rd |only
trio-1.0.4/trio/man/trio.ped1.Rd |only
trio-1.0.4/trio/man/trio.ped2.Rd |only
trio-1.0.7/trio/DESCRIPTION | 8 +-
trio-1.0.7/trio/data/LDdata.RData |only
trio-1.0.7/trio/inst/doc/figure1.eps |only
trio-1.0.7/trio/inst/doc/figure1.png |only
trio-1.0.7/trio/inst/doc/figure2.eps |only
trio-1.0.7/trio/inst/doc/figure2.png |only
trio-1.0.7/trio/inst/doc/figure3.eps |only
trio-1.0.7/trio/inst/doc/figure3.png |only
trio-1.0.7/trio/inst/doc/trio.Rnw | 116 +++++++++++++++++++++++++++++++++--
trio-1.0.7/trio/inst/doc/trio.pdf |binary
trio-1.0.7/trio/man/LDdata.Rd |only
trio-1.0.7/trio/man/freq.hap.Rd | 14 ++--
trio-1.0.7/trio/man/trio.gen1.Rd | 29 ++++++--
21 files changed, 147 insertions(+), 20 deletions(-)
Path: /cran/updated | permanent link
More information about powerMediation at CRAN
Path: /cran/new | permanent link
Title: Methods that apply to rows and columns of a matrix
Diff between matrixStats versions 0.1.8 dated 2009-11-13 and 0.1.9 dated 2010-02-04
More information about matrixStats at CRAN
Description: This packages provides methods operating on rows and
columns of matrices. The methods are optimized for speed and
memory. This package is currently in a beta phase. Make sure
to read the 'Roadmap' section in the package help.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 8 ++--
R/rowWeightedMeans.matrix.R | 76 ++++++++++++++++++++++++++++++++++++++------
inst/NEWS | 8 ++++
tests/rowWeightedMeans.R |only
tests/rowWeightedMedians.R |only
5 files changed, 77 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Title: Various programming utilities
Diff between R.utils versions 1.3.2 dated 2010-01-22 and 1.3.3 dated 2010-02-04
More information about R.utils at CRAN
Description: This package provides utility classes and methods useful
when programming in R and developing R packages.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 8 ++++----
R/Arguments.R | 33 +++++++++++++++++++++++++++++----
inst/NEWS | 4 ++++
3 files changed, 37 insertions(+), 8 deletions(-)
Path: /cran/updated | permanent link
More information about MAc at CRAN
Path: /cran/new | permanent link
Title: For mapping global data : rworldmap
Diff between rworldmap versions 0.106 dated 2010-01-06 and 0.107 dated 2010-02-03
More information about rworldmap at CRAN
Description: Enables mapping of country level and gridded user
datasets.
Author: Andy South
Maintainer: Andy South
DESCRIPTION | 14
R/addMapLegendBoxes.r | 4
R/mapBubbles.r | 2
R/mapGriddedData.r | 43
inst/doc/Rplots.pdf |56036 --------------------------------------------
inst/doc/cefasLogo.jpg |only
inst/doc/nercLogo.jpg |only
inst/doc/questLogo.png |only
inst/doc/rworldmap.Rnw | 25
inst/doc/rworldmap.pdf | 2538 +
inst/doc/rworldmapFAQ.Rnw | 188
inst/doc/rworldmapFAQ.pdf |58490 +---------------------------------------------
man/addMapLegendBoxes.Rd | 12
man/mapBubbles.Rd | 2
man/mapGriddedData.Rd | 7
15 files changed, 4138 insertions(+), 113223 deletions(-)
Path: /cran/updated | permanent link
Title: Exact or Asymptotic permutation tests
Diff between perm versions 0.9-1.3 dated 2009-07-30 and 0.9-9.5 dated 2010-02-03
More information about perm at CRAN
Description: Perform Exact or Asymptotic permutation tests
Author: Michael Fay
Maintainer: Michael Fay
DESCRIPTION | 8 ++++----
NEWS |only
R/algorithms.R | 38 ++++++++++++++++++++++++++------------
R/chooseMatrix.R | 4 ++++
R/getcnt.R | 2 ++
R/methodRules.R | 1 +
R/permKS.R | 1 +
R/permTREND.R | 1 +
R/permTS.R | 1 +
man/perm-package.Rd | 2 +-
man/perm.Rd | 11 ++++++++---
tests/perm.coin.check.R |only
tests/precision.problem.R | 4 +++-
13 files changed, 52 insertions(+), 21 deletions(-)
Path: /cran/updated | permanent link
Title: Weighted Logrank Tests and NPMLE for interval censored data
Diff between interval versions 0.7-5.5 dated 2009-08-04 and 0.9-9.5 dated 2010-02-03
More information about interval at CRAN
Description: Functions to fit nonparametric survival curves, plot them,
and perform logrank or Wilcoxon type tests.
Author: Michael P. Fay
Maintainer: Michael P. Fay
interval-0.7-5.5/interval/ChangeLog |only
interval-0.7-5.5/interval/TODOLIST |only
interval-0.9-9.5/interval/DESCRIPTION | 14
interval-0.9-9.5/interval/NAMESPACE | 4
interval-0.9-9.5/interval/NEWS |only
interval-0.9-9.5/interval/R/SurvLR.R | 2
interval-0.9-9.5/interval/R/getsurv.R | 89
interval-0.9-9.5/interval/R/icScoreTest.R | 5
interval-0.9-9.5/interval/R/icWSR.r | 21
interval-0.9-9.5/interval/R/icfit.R | 258
interval-0.9-9.5/interval/R/icfitControl.R | 4
interval-0.9-9.5/interval/R/ictest.R | 51
interval-0.9-9.5/interval/R/initFuncs.R |only
interval-0.9-9.5/interval/R/methods.icfit.R | 134
interval-0.9-9.5/interval/R/scoresFromFit.R | 37
interval-0.9-9.5/interval/R/wlr_trafo.R | 26
interval-0.9-9.5/interval/demo/00Index | 1
interval-0.9-9.5/interval/demo/check.time.initfit.R |only
interval-0.9-9.5/interval/demo/cosmesis.test.R | 6
interval-0.9-9.5/interval/inst/doc/Rplots.pdf | 193
interval-0.9-9.5/interval/inst/doc/interval.bib | 91
interval-0.9-9.5/interval/inst/doc/intervalPaper.Rnw | 2241 +++---
interval-0.9-9.5/interval/inst/doc/intervalPaper.dvi |only
interval-0.9-9.5/interval/inst/doc/intervalPaper.pdf | 7049 ++++++++++++-------
interval-0.9-9.5/interval/man/Aintmap.Rd | 22
interval-0.9-9.5/interval/man/getsurv.Rd | 14
interval-0.9-9.5/interval/man/icfit.Rd | 38
interval-0.9-9.5/interval/man/icfitControl.Rd | 6
interval-0.9-9.5/interval/man/ictest.Rd | 121
interval-0.9-9.5/interval/man/initcomputeMLE.Rd |only
interval-0.9-9.5/interval/man/interval-internal.Rd | 4
interval-0.9-9.5/interval/man/interval-package.Rd | 4
interval-0.9-9.5/interval/man/plot.icfit.Rd | 42
interval-0.9-9.5/interval/man/summary.icfit.Rd |only
34 files changed, 6753 insertions(+), 3724 deletions(-)
Path: /cran/updated | permanent link
Title: Graphical Independence Networks
Diff between gRain versions 0.8.2 dated 2009-11-22 and 0.8.3 dated 2010-02-03
More information about gRain at CRAN
Description: A package for probability propagation in graphical
independence networks, also known as probabilistic expert
systems (which includes Bayesian networks as a special case).
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
ChangeLog | 6 ++++++
DESCRIPTION | 6 +++---
R/Finding.R | 7 +++++--
R/predict.R | 17 ++++++++---------
inst/doc/gRain-intro.pdf |binary
man/compileCPT.Rd | 2 +-
6 files changed, 23 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Title: Sparse and Dense Matrix Classes and Methods
Diff between Matrix versions 0.999375-33 dated 2009-12-11 and 0.999375-35 dated 2010-02-03
More information about Matrix at CRAN
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
Author: Douglas Bates
Maintainer: Doug and Martin
ChangeLog | 86 ++++
DESCRIPTION | 8
Done | 10
NAMESPACE | 15
R/AllClass.R | 15
R/AllGeneric.R | 5
R/Auxiliaries.R | 122 +-----
R/Csparse.R | 86 ++++
R/Ops.R | 12
R/SparseM-conv.R | 2
R/Tsparse.R | 244 ------------
R/abIndex.R | 639 +++++++++++++++++++++++++++-----
R/dgeMatrix.R | 4
R/diagMatrix.R | 50 +-
R/nnzero.R |only
R/spModels.R | 4
R/sparseVector.R | 5
R/zzz.R | 5
TODO | 3
inst/doc/Comparisons.pdf | 489 ++++++++++++------------
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 858 ++++++++++++++++++++-----------------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf | 873 +++++++++++++++++++++-----------------------
inst/include/Matrix_stubs.c | 11
inst/test-tools.R | 21 -
man/CsparseMatrix-class.Rd | 1
man/Diagonal.Rd | 24 +
man/Xtrct-methods.Rd | 3
man/abIndex-class.Rd | 43 +-
man/abIseq.Rd |only
man/all.equal-methods.Rd | 5
man/contrast.Rd | 4
man/nnzero.Rd | 26 +
man/rleDiff-class.Rd | 18
man/sparseMatrix-class.Rd | 1
src/Csparse.c | 7
src/abIndex.c | 63 ---
src/abIndex.h | 3
src/chm_common.c | 8
src/init.c | 4
src/lgCMatrix.c | 4
src/t_Matrix_rle.c |only
tests/Simple.R | 3
tests/abIndex-tsts.R | 60 ++-
tests/base-matrix-fun.R | 2
tests/factorizing.R | 14
tests/indexing.R | 24 -
tests/indexing.Rout.save | 88 +++-
tests/spModel.matrix.R | 8
50 files changed, 2257 insertions(+), 1723 deletions(-)
Path: /cran/updated | permanent link
Title: This package provides some basic methods for meta-analysis
Diff between MADAM versions 1.0-1 dated 2010-02-03 and 1.0-2 dated 2010-02-03
More information about MADAM at CRAN
Description: In this package we provide some basic utilities for
performing meta-analysis. We included methods for dealing with
missing values, or measurements with a variance of zero. For
developing or testing meta-analysis methods a mock up data
model is integrated. Additionally did we implement a method for
performing significance based methods proposed by Fisher and
Rhodes. For visualizing the results three methods were added.
Author: Karl Kugler
Maintainer: Karl Kugler
DESCRIPTION | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: LMGene Software for Data Transformation and Identification of
Differentially Expressed Genes in Gene Expression Arrays
Diff between LMGene versions 1.16.0 dated 2009-11-13 and 2.2.0 dated 2010-02-03
More information about LMGene at CRAN
Description: LMGene package for analysis of microarray data using a
linear model and glog data transformation
Author: David Rocke, Geun Cheol Lee, John Tillinghast, Blythe
Durbin-Johnson, and Shiquan Wu
Maintainer: Blythe Durbin-Johnson
LMGene-1.16.0/LMGene/inst/doc/Rplots.ps |only
LMGene-1.16.0/LMGene/man/GetLMObj.Rd |only
LMGene-1.16.0/LMGene/man/jggrad2.Rd |only
LMGene-1.16.0/LMGene/man/jglog.Rd |only
LMGene-1.16.0/LMGene/man/mlm2lm.Rd |only
LMGene-1.16.0/LMGene/man/msa.Rd |only
LMGene-1.16.0/LMGene/man/msecalc.Rd |only
LMGene-1.16.0/LMGene/man/msecalcmult.Rd |only
LMGene-1.16.0/LMGene/man/pvadjust.Rd |only
LMGene-1.16.0/LMGene/man/rowlist.Rd |only
LMGene-1.16.0/LMGene/man/tranest2.Rd |only
LMGene-1.16.0/LMGene/man/tranestmult.Rd |only
LMGene-2.2.0/LMGene/DESCRIPTION | 25 -
LMGene-2.2.0/LMGene/NAMESPACE |only
LMGene-2.2.0/LMGene/R/GetLMObj.R | 8
LMGene-2.2.0/LMGene/R/LMGene.R | 26 -
LMGene-2.2.0/LMGene/R/arrayGlogSDStability.R |only
LMGene-2.2.0/LMGene/R/fitFDist.R |only
LMGene-2.2.0/LMGene/R/fitScaledF.R |only
LMGene-2.2.0/LMGene/R/genediff.R | 178 ++++---
LMGene-2.2.0/LMGene/R/glog.R | 3
LMGene-2.2.0/LMGene/R/jggrad2.R | 4
LMGene-2.2.0/LMGene/R/jglog.R | 2
LMGene-2.2.0/LMGene/R/lnorm.R | 6
LMGene-2.2.0/LMGene/R/lnormeS.R | 19
LMGene-2.2.0/LMGene/R/mlm2lm.R | 4
LMGene-2.2.0/LMGene/R/msa.R | 4
LMGene-2.2.0/LMGene/R/msecalc.R | 12
LMGene-2.2.0/LMGene/R/msecalcmult.R | 4
LMGene-2.2.0/LMGene/R/neweS.R | 6
LMGene-2.2.0/LMGene/R/norm.R | 5
LMGene-2.2.0/LMGene/R/plotMeanSD.R |only
LMGene-2.2.0/LMGene/R/psmeans.R | 43 +
LMGene-2.2.0/LMGene/R/pvadjust.R | 4
LMGene-2.2.0/LMGene/R/rowaov.R | 14
LMGene-2.2.0/LMGene/R/rowlist.R | 6
LMGene-2.2.0/LMGene/R/tranest.R | 68 ++
LMGene-2.2.0/LMGene/R/tranest2.R | 75 ++-
LMGene-2.2.0/LMGene/R/tranestAffyProbeLevel.R |only
LMGene-2.2.0/LMGene/R/tranestmult.R | 4
LMGene-2.2.0/LMGene/R/transeS.R | 7
LMGene-2.2.0/LMGene/R/trigammaInverse.R |only
LMGene-2.2.0/LMGene/inst/doc/LMGene.Rnw | 524 +++++++++++------------
LMGene-2.2.0/LMGene/inst/doc/LMGene.pdf |binary
LMGene-2.2.0/LMGene/man/LMGene.Rd | 60 +-
LMGene-2.2.0/LMGene/man/genediff.Rd | 88 ++-
LMGene-2.2.0/LMGene/man/glog.Rd | 31 -
LMGene-2.2.0/LMGene/man/lnorm.Rd | 27 -
LMGene-2.2.0/LMGene/man/lnormeS.Rd | 70 +--
LMGene-2.2.0/LMGene/man/neweS.Rd | 24 -
LMGene-2.2.0/LMGene/man/norm.Rd | 26 -
LMGene-2.2.0/LMGene/man/plotMeanSD.Rd |only
LMGene-2.2.0/LMGene/man/psmeans.Rd | 89 ++-
LMGene-2.2.0/LMGene/man/rowaov.Rd | 32 -
LMGene-2.2.0/LMGene/man/sample.eS.Rd | 10
LMGene-2.2.0/LMGene/man/sample.ind.Rd | 11
LMGene-2.2.0/LMGene/man/sample.mat.Rd | 8
LMGene-2.2.0/LMGene/man/tranest.Rd | 95 +++-
LMGene-2.2.0/LMGene/man/tranestAffyProbeLevel.Rd |only
LMGene-2.2.0/LMGene/man/transeS.Rd | 88 ++-
LMGene-2.2.0/LMGene/man/vlist.Rd | 5
61 files changed, 983 insertions(+), 732 deletions(-)
Path: /cran/updated | permanent link
Title: Processing and Simulating Genotype Data for Trio Logic
Regression
Diff between trio versions 1.0.3 dated 2010-02-01 and 1.0.4 dated 2010-02-03
More information about trio at CRAN
Description: Set up matched case-pseudo controls genotypes data for
trios in order to run trio logic regreesion, to impute missing
genotypes in trios, or to simulate case-parent trios with
disease risk dependent on SNP-SNP interaction. This package
furthermore contains functions for computing the values of
pairwise LD measures and for identifying LD blocks.
Author: Qing Li, Holger Schwender
Maintainer: Qing Li
DESCRIPTION | 8 ++++----
R/getLD.R | 14 +++++++-------
inst/doc/trio.pdf |binary
3 files changed, 11 insertions(+), 11 deletions(-)
Path: /cran/updated | permanent link
More information about sphet at CRAN
Path: /cran/new | permanent link
Title: Nonparametric kernel smoothing methods for mixed data types
Diff between np versions 0.30-5 dated 2010-01-29 and 0.30-6 dated 2010-02-03
More information about np at CRAN
Description: This package provides a variety of nonparametric (and
semiparametric) kernel methods that seamlessly handle a mix of
continuous, unordered, and ordered factor data types. We would
like to gratefully acknowledge support from the Natural
Sciences and Engineering Research Council of Canada
(NSERC:www.nserc.ca), the Social Sciences and Humanities
Research Council of Canada (SSHRC:www.sshrc.ca), and the Shared
Hierarchical Academic Research Computing Network
(SHARCNET:www.sharcnet.ca).
Author: Tristen Hayfield
Maintainer: Jeffrey S. Racine
np-0.30-5/np/R/np.restest.R |only
np-0.30-6/np/CHANGELOG | 17
np-0.30-6/np/DESCRIPTION | 10
np-0.30-6/np/NAMESPACE | 6
np-0.30-6/np/R/deneqtest.R | 8
np-0.30-6/np/R/deptest.R |only
np-0.30-6/np/R/np.cmstest.R | 12
np-0.30-6/np/R/np.deneqtest.R | 44
np-0.30-6/np/R/np.deptest.R |only
np-0.30-6/np/R/np.plot.R | 11
np-0.30-6/np/R/np.qcmstest.R | 12
np-0.30-6/np/R/np.sdeptest.R |only
np-0.30-6/np/R/np.sigtest.R | 14
np-0.30-6/np/R/np.singleindex.R | 2
np-0.30-6/np/R/np.singleindex.bw.R | 12
np-0.30-6/np/R/np.symtest.R | 100
np-0.30-6/np/R/sdeptest.R |only
np-0.30-6/np/R/zzz.R | 2
np-0.30-6/np/inst/doc/np.Rnw | 1
np-0.30-6/np/inst/doc/np.pdf |27814 ++++++++++++++++++-------------------
np-0.30-6/np/inst/doc/np_faq.pdf | 2476 +--
np-0.30-6/np/man/b.star.Rd | 25
np-0.30-6/np/man/data-wage1.Rd | 2
np-0.30-6/np/man/gradients.Rd | 2
np-0.30-6/np/man/np.cmstest.Rd | 2
np-0.30-6/np/man/np.deneqtest.Rd | 30
np-0.30-6/np/man/np.density.Rd | 58
np-0.30-6/np/man/np.density.bw.Rd | 6
np-0.30-6/np/man/np.deptest.Rd |only
np-0.30-6/np/man/np.plot.Rd | 2
np-0.30-6/np/man/np.qcmstest.Rd | 6
np-0.30-6/np/man/np.sdeptest.Rd |only
np-0.30-6/np/man/np.sigtest.Rd | 16
np-0.30-6/np/man/np.symtest.Rd | 73
np-0.30-6/np/svn-commit.2.tmp |only
35 files changed, 15797 insertions(+), 14966 deletions(-)
Path: /cran/updated | permanent link
Title: Analysis of Mark-Recapture data
Diff between mra versions 2.2 dated 2008-10-09 and 2.3 dated 2010-02-03
More information about mra at CRAN
Description: Analysis of mark-recapture data using covariates. Models
implemented: CJS open population; Huggin's closed population.
Author: Trent McDonald
Maintainer: Trent McDonald
DESCRIPTION | 23
R/F.cjs.estim.R | 271 +++----
R/F.cr.model.avg.r |only
R/F.fit.table.r |only
R/F.huggins.estim.R | 206 ++---
R/ivar.R | 4
R/mra.control.r |only
R/tvar.r | 4
man/F.cjs.estim.Rd | 47 -
man/F.cr.model.avg.Rd |only
man/F.fit.table.Rd |only
man/F.huggins.estim.Rd | 21
man/ivar.Rd | 22
man/lines.cjs.Rd | 2
man/mra.control.Rd |only
man/residuals.cjs.Rd | 2
man/tvar.Rd | 27
src/Mrawin.f90 | 1777 +++++++++++++++++++++++++------------------------
18 files changed, 1259 insertions(+), 1147 deletions(-)
Path: /cran/updated | permanent link
Title: Batching Routines in Parallel and Passing Command-Line Arguments
to R
Diff between batch versions 1.0-0 dated 2009-12-17 and 1.0-1 dated 2010-02-03
More information about batch at CRAN
Description: Functions to allow you to easily pass command-line
arguments into R (primary use is linux), and functions to aid
in submitting your R code in parallel on a cluster and joining
the results afterward (e.g. multiple parameter values for
simulations running in parallel, splitting up a permutation
test in parallel, etc.). See `parseCommandArgs(...)' for the
main example of how to use this package.
Author: Thomas Hoffmann
Maintainer: Thomas Hoffmann
DESCRIPTION | 8 ++++----
NAMESPACE | 2 +-
R/batch.R | 3 ++-
R/pasteCsv3.R | 7 ++++++-
4 files changed, 13 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Title: Kalman filter and smoothers for exponential family state space
models.
Diff between KFAS versions 0.5.4 dated 2010-02-02 and 0.5.5 dated 2010-02-03
More information about KFAS at CRAN
Description: Package KFAS provides functions for Kalman filtering,
state, disturbance and simulation smoothing, forecasting and
simulation of state space models. All functions can use exact
diffuse initialisation when distributions of some or all
elements of initial state vector are unknown. Filtering, state
smoothing and simulation functions use sequential processing
algorithm, which is faster than standard approach, and it also
allows singularity of prediction error variance matrix. KFAS
also contains function for computing the likelihood of
exponential family state space models and function for state
smoothing of exponential family state space models. These
non-gaussian functions are still under heavy developement.
Author: Jouni Helske
Maintainer: Jouni Helske
DESCRIPTION | 8 ++++----
src/kf.f90 | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
More information about GWRM at CRAN
Path: /cran/new | permanent link
Title: An interface for creating GUIs modeled in part after traits UI
module for python.
Diff between traitr versions 0.3 dated 2010-01-22 and 0.4 dated 2010-02-03
More information about traitr at CRAN
Description: An interface for creating GUIs modeled in part after the
traits UI module for python. The basic design takes advantage
of the model-view-controller design pattern. The interface
makes basic dialogs quite easy to produce.
Author: John Verzani
Maintainer: John Verzani
ChangeLog | 11 ++++
DESCRIPTION | 16 +++---
NEWS | 12 ++++
R/base.R | 5 +
R/controller.R | 4 +
R/editor.R | 30 ++++++++---
R/itemgroup.R | 5 -
R/items.R | 135 ++++++++++++++++++++++++++++++++++++++-------------
README | 4 -
TODO.txt | 16 +++++-
inst/doc/traitr.Rnw | 4 -
inst/doc/traitr.pdf |binary
man/buttonItem.Rd | 4 +
man/choiceItem.Rd | 23 ++++++++
man/numericItem.Rd | 9 +++
man/stringItem.Rd | 10 +++
man/trueFalseItem.Rd | 5 +
testing/test-mvc.R | 68 ++++++++++++++++++++++++-
18 files changed, 299 insertions(+), 62 deletions(-)
Path: /cran/updated | permanent link
Title: Tools for Scraping Data from HTML and XML Documents
Diff between scrapeR versions 0.1.5 dated 2010-01-25 and 0.1.6 dated 2010-02-03
More information about scrapeR at CRAN
Description: Tools for Scraping Data from Web-Based Documents
Author: Ryan M. Acton
Maintainer: Ryan M. Acton
DESCRIPTION | 6 +++---
R/functions.R | 17 +++++------------
man/scrape.Rd | 10 +++++-----
man/scrapeR-package.Rd | 2 +-
4 files changed, 14 insertions(+), 21 deletions(-)
Path: /cran/updated | permanent link
Title: L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in
the Cox model
Diff between penalized versions 0.9-27 dated 2009-10-07 and 0.9-28 dated 2010-02-03
More information about penalized at CRAN
Description: A package for fitting possibly high dimensional penalized
regression models. The penalty structure can be any combination
of an L1 penalty (lasso), an L2 penalty (ridge) and a
positivity constraint on the regression coefficients. The
supported regression models are linear, logistic and poisson
regression and the Cox Proportional Hazards model.
Cross-validation routines allow optimization of the tuning
parameters.
Author: Jelle Goeman
Maintainer: Jelle Goeman
penalized-0.9-27/penalized/inst/doc/penalized.Rnw |only
penalized-0.9-28/penalized/DESCRIPTION | 10 +++++-----
penalized-0.9-28/penalized/R/cvl.R | 4 ++--
penalized-0.9-28/penalized/R/plotpath.R | 2 +-
penalized-0.9-28/penalized/changelog.txt | 8 ++++++++
penalized-0.9-28/penalized/inst/doc/Rplots.pdf | 6 +++---
penalized-0.9-28/penalized/inst/doc/penalized.pdf |binary
penalized-0.9-28/penalized/man/cvl.Rd | 2 +-
penalized-0.9-28/penalized/man/penalized.Rd | 2 +-
9 files changed, 21 insertions(+), 13 deletions(-)
Path: /cran/updated | permanent link
Title: General Polygon Clipping Library for R
Diff between gpclib versions 1.4-4 dated 2009-05-11 and 1.5-1 dated 2010-02-03
More information about gpclib at CRAN
Description: General polygon clipping routines for R based on Alan
Murta's C library
Author: Roger D. Peng
Maintainer: Roger D. Peng
DESCRIPTION | 13 ++++---
R/Rgpc.R | 72 ++++++++++++++++---------------------------
man/gpc.poly-class.Rd | 5 ++
man/gpc.poly.nohole-class.Rd | 18 +++++-----
tests/reg-tests.R | 2 -
tests/reg-tests.Rout.save | 7 +---
6 files changed, 51 insertions(+), 66 deletions(-)
Path: /cran/updated | permanent link
More information about codep at CRAN
Path: /cran/new | permanent link
Title: Clustering Method Based on Local Shrinking
Diff between clues versions 0.4.0 dated 2009-12-24 and 0.5-0 dated 2010-02-03
More information about clues at CRAN
Description: The package contains functions for automatically
estimating the number of clusters and getting the final cluster
partition without any input parameter except the stopping rule
for convergence. The package also provides functions to
evaluate and compare the performances of partitions of a data
set both numerically and graphically.
Author: Fang Chang
Maintainer: Fang Chang
clues-0.4.0/clues/inst/doc/clues_intro.Rnw |only
clues-0.4.0/clues/inst/doc/clues_intro.pdf |only
clues-0.5-0/clues/DESCRIPTION | 9 +++++----
clues-0.5-0/clues/inst/CITATION |only
clues-0.5-0/clues/inst/doc/WDBC.dat |only
clues-0.5-0/clues/inst/doc/clues.Rnw |only
clues-0.5-0/clues/inst/doc/clues.bib |only
clues-0.5-0/clues/inst/doc/clues.pdf |only
clues-0.5-0/clues/inst/doc/log_running_time.pdf |only
clues-0.5-0/clues/inst/doc/log_running_time_p.pdf |only
10 files changed, 5 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Title: This package provides some basic methods for meta-analysis
Diff between MADAM versions 1.0 dated 2010-02-02 and 1.0-1 dated 2010-02-03
More information about MADAM at CRAN
Description: In this package we provide some basic utilities for
performing meta-analysis. We included methods for dealing with
missing values, or measurements with a variance of zero. For
developing or testing meta-analysis methods a mock up data
model is integrated. Additionally did we implement a method for
performing significance based methods proposed by Fisher and
Rhodes. For visualizing the results three methods were added.
Author: Karl Kugler
Maintainer: Karl Kugler
DESCRIPTION | 9 ++++-----
man/calculateRankProduct.Rd | 2 ++
man/calculateRankSum.Rd | 2 ++
man/doEnsemble.Rd | 4 ++++
4 files changed, 12 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: Topographic and Geologic Mapping
Diff between GEOmap versions 1.4-2 dated 2009-06-02 and 1.5-0 dated 2010-02-03
More information about GEOmap at CRAN
Description: Set of routines for making Map Projections (forward and
inverse), Topographic Maps, Perspective plots, Geological Maps,
geological map symbols, geological databases, interactive
plotting and selection of focus regions.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 8 +-
R/GEOTOPO.R | 89 +++++++++++++++++++++++--
R/Gcols.R |only
R/LandSeaCol.R |only
R/SELGEOmap.R | 6 +
R/XSECDEM.R | 65 ++++++++++--------
R/addLLXY.R | 28 ++++++-
R/antipolygon.R | 14 +++
R/mapTeleSeis.R |only
R/rectPERIM.R |only
R/sqrTICXY.R | 178 ++++++++++++++++++++++++++++++++++++++++++++++----
R/subsetTOPO.R | 2
R/targetLL.R |only
inst/doc/GEOmap.pdf |binary
man/GEOmap-package.Rd | 4 -
man/Gcols.Rd |only
man/LandSeaCol.Rd |only
man/Lintersect.Rd | 2
man/antipolygon.Rd | 9 +-
man/mapTeleSeis.Rd |only
man/rectPERIM.Rd |only
man/sqrTICXY.Rd | 6 +
man/targetLL.Rd |only
23 files changed, 343 insertions(+), 68 deletions(-)
Path: /cran/updated | permanent link
Title: Applies GAMbag, GAMrsm and GAMens ensemble classifiers for
binary classification
Diff between GAMens versions 1.0 dated 2010-01-11 and 1.1 dated 2010-02-03
More information about GAMens at CRAN
Description: This package implements the GAMbag, GAMrsm and GAMens
ensemble classifiers for binary classification (De Bock et al.,
2010). The ensembles implement Bagging (Breiman, 1996), the
Random Subspace Method (Ho, 1998), or both, and use Hastie and
Tibshirani's (1990) generalized additive models (GAMs) as base
classifiers. Once an ensemble classifier has been trained, it
can be used for predictions on new data. A function for cross
validation is also included.
Author: Koen W. De Bock, Kristof Coussement and Dirk Van den Poel
Maintainer: Koen W. De Bock
DESCRIPTION | 6 +++---
R/predict.GAMens.R | 20 ++++++++------------
man/GAMens.cv.Rd | 14 +++++---------
man/predict.GAMens.Rd | 2 +-
4 files changed, 17 insertions(+), 25 deletions(-)
Path: /cran/updated | permanent link
Title: Integrative Functional Analysis of Transcriptional Networks
Diff between FunNet versions 1.00-7 dated 2009-07-18 and 1.00-8 dated 2010-02-03
More information about FunNet at CRAN
Description: FunNet is an integrative tool for analyzing gene
co-expression networks built from microarray expression data.
The analytic model implemented in this library involves two
abstraction layers: transcriptional and functional (biological
roles). A functional profiling technique using Gene Ontology &
KEGG annotations is applied to extract a list of relevant
biological themes from microarray expression profiling data.
Afterwards multiple-instance representations are built to
relate significant themes to their transcriptional instances
(i.e. the two layers of the model). An adapted non-linear
dynamical system model is used to quantify the proximity of
relevant genomic themes based on the similarity of the
expression profiles of their gene instances. Eventually an
unsupervised multiple-instance clustering procedure, relying on
the two abstraction layers, is used to identify the structure
of the co-expression network composed from modules of
functionally related transcripts. Functional and
transcriptional maps of the co-expression network are provided
separately together with detailed information on the network
centrality of related transcripts and genomic themes.
Author: Corneliu Henegar
Maintainer: Corneliu Henegar
DESCRIPTION | 8
R/Annotations.R | 4
R/FunNet.R | 631 ++++++++++++++++++++++++++++++++++++++++++++++++++------
R/sysdata.rda |binary
copying | 2
man/FunNet.Rd | 6
6 files changed, 582 insertions(+), 69 deletions(-)
Path: /cran/updated | permanent link
Title: FISH Based Normalization and Copy Number inference of SNP
microarray data
Diff between FBN versions 1.3 dated 2010-02-01 and 1.4 dated 2010-02-03
More information about FBN at CRAN
Description: Normalizes the data from a file containing the raw values
of the SNP probes of microarrray data by using the FISH probes
and their corresponding CNs.
Author: Adrian Andronache
Maintainer: Adrian Andronache
DESCRIPTION | 8 ++++----
R/FBNormalization.R | 13 +++++++------
2 files changed, 11 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Title: Unicode data and utilities
Diff between Unicode versions 0.1-1 dated 2010-01-26 and 0.1-2 dated 2010-02-02
More information about Unicode at CRAN
Description: Data from Unicode 5.2.0 and related utilities
Author: Kurt Hornik
Maintainer: Kurt Hornik
DESCRIPTION | 8 ++--
NAMESPACE | 50 +++++++++++++++++++++++--
R/basics.R | 94 ++++++++++++++++++++++++++++++++++++++++++-----
R/casefuns.R |only
R/charfuns.R | 84 +++++++++++++++++++++++++++++++-----------
R/strfuns.R | 23 +----------
R/sysdata.rda |binary
R/ucdmisc.R | 4 ++
man/casefuns.Rd |only
man/tokenizers.Rd | 11 +++--
man/u_char_basics.Rd | 4 +-
man/u_char_names.Rd | 18 ++++++---
man/u_char_properties.Rd | 13 ++++--
man/u_named_sequences.Rd |only
14 files changed, 233 insertions(+), 76 deletions(-)
Path: /cran/updated | permanent link
Title: Statistical inference for partially observed Markov processes
Diff between pomp versions 0.27-1 dated 2010-01-21 and 0.27-2 dated 2010-02-02
More information about pomp at CRAN
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner,
Bruce Kendall
Maintainer: Aaron A. King
DESCRIPTION | 10 +--
NAMESPACE | 1
R/bsplines.R | 22 --------
data/LondonYorke.rda |only
data/euler.sir.R | 32 +++++-------
inst/ChangeLog | 16 ++++++
inst/doc/advanced_topics_in_pomp.Rnw | 77 +++++++++++++----------------
inst/doc/advanced_topics_in_pomp.pdf |binary
inst/doc/intro_to_pomp.pdf |binary
inst/examples/euler_sir.R | 9 +--
inst/examples/euler_sir.c | 24 ++++++---
inst/include/pomp.h | 3 +
man/LondonYorke.Rd |only
man/bsplines.Rd | 4 +
src/bspline.c | 91 +++++++++++++++++++++++++++++------
src/euler_sir.c | 24 ++++++---
src/pomp.h | 3 +
tests/sir.R | 8 +--
tests/sir.Rout.save | 32 ++++++------
19 files changed, 219 insertions(+), 137 deletions(-)
Path: /cran/updated | permanent link
Title: US Census 2000 Suite of R Packages
Diff between UScensus2000 versions 0.05 dated 2010-01-31 and 0.06 dated 2010-02-02
More information about UScensus2000 at CRAN
Description: US 2000 Census shape files and additional demographic data
from the SF1 100 percent files. This package contains a number
of helper functions for the UScensus2000blk,
UScensus2000blkgrp, UScensus2000tract, UScensus2000cdp
packages.
Author: Zack W. Almquist
Maintainer: Zack W. Almquist
DESCRIPTION | 6 ++---
R/county.R | 46 ++++++++++++++++++++++++++++++++++++++------
data/countyfips.rda |binary
man/UScensus2000-package.Rd | 4 +--
man/county.Rd | 2 -
man/countyfips.Rd | 4 +--
6 files changed, 48 insertions(+), 14 deletions(-)
Path: /cran/updated | permanent link
Title: Kalman filter and smoothers for exponential family state space
models.
Diff between KFAS versions 0.5.3 dated 2010-01-25 and 0.5.4 dated 2010-02-02
More information about KFAS at CRAN
Description: Package KFAS provides functions for Kalman filtering,
state, disturbance and simulation smoothing, forecasting and
simulation of state space models. All functions can use exact
diffuse initialisation when distributions of some or all
elements of initial state vector are unknown. Filtering, state
smoothing and simulation functions use sequential processing
algorithm, which is faster than standard approach, and it also
allows singularity of prediction error variance matrix. KFAS
also contains function for computing the likelihood of
exponential family state space models and function for state
smoothing of exponential family state space models. These
non-gaussian functions are still under heavy developement.
Author: Jouni Helske
Maintainer: Jouni Helske
DESCRIPTION | 11 -
R/KFAS.R | 348 ++++++++++++++++---------------
man/eflik.Rd | 25 +-
man/eflik0.Rd | 16 -
man/efsmoother.Rd | 2
man/kf.Rd | 6
man/simsmoother.Rd | 4
src/Makevars | 2
src/eflik.f90 | 164 ++------------
src/eflik0.f90 | 113 +++-------
src/kf.f90 | 569 +++++++++++++++++++++-------------------------------
src/ks.f90 | 231 +++++++++------------
src/simsmoother.f90 | 406 ++++++++++++++++---------------------
13 files changed, 809 insertions(+), 1088 deletions(-)
Path: /cran/updated | permanent link
Title: Meta-Analysis Package for R
Diff between metafor versions 0.5-7 dated 2009-12-06 and 1.0-1 dated 2010-02-02
More information about metafor at CRAN
Description: The metafor package consists of a collection of functions
for conducting meta-analyses in R. Fixed- and random-effects
models (with and without moderators) can be fitted via the
general linear (mixed-effects) model. For 2x2 table data, the
Mantel-Haenszel and Peto's method are also implemented.
Author: Wolfgang Viechtbauer
Maintainer: Wolfgang Viechtbauer
metafor-0.5-7/metafor/man/predict.rma.uni.Rd |only
metafor-1.0-1/metafor/DESCRIPTION | 8
metafor-1.0-1/metafor/NAMESPACE | 4
metafor-1.0-1/metafor/NEWS | 46
metafor-1.0-1/metafor/R/metafor.R | 1439 +++++++++++++++++++------
metafor-1.0-1/metafor/man/addpoly.default.Rd | 12
metafor-1.0-1/metafor/man/addpoly.rma.Rd | 8
metafor-1.0-1/metafor/man/anova.rma.uni.Rd | 6
metafor-1.0-1/metafor/man/blup.rma.uni.Rd | 10
metafor-1.0-1/metafor/man/cint.rma.uni.Rd | 2
metafor-1.0-1/metafor/man/coef.rma.Rd | 2
metafor-1.0-1/metafor/man/cumul.rma.mh.Rd | 7
metafor-1.0-1/metafor/man/cumul.rma.uni.Rd | 5
metafor-1.0-1/metafor/man/dat.bcg.Rd | 19
metafor-1.0-1/metafor/man/escalc.Rd | 54
metafor-1.0-1/metafor/man/fitstats.rma.Rd | 2
metafor-1.0-1/metafor/man/fitted.rma.Rd | 6
metafor-1.0-1/metafor/man/forest.default.Rd | 17
metafor-1.0-1/metafor/man/forest.rma.Rd | 57
metafor-1.0-1/metafor/man/forest.rma.cumul.Rd | 17
metafor-1.0-1/metafor/man/fsn.Rd | 2
metafor-1.0-1/metafor/man/funnel.rma.Rd | 19
metafor-1.0-1/metafor/man/hatvalues.rma.uni.Rd | 2
metafor-1.0-1/metafor/man/influence.rma.uni.Rd | 2
metafor-1.0-1/metafor/man/leave1out.rma.mh.Rd | 4
metafor-1.0-1/metafor/man/leave1out.rma.uni.Rd | 2
metafor-1.0-1/metafor/man/logLik.rma.Rd | 2
metafor-1.0-1/metafor/man/metafor-package.Rd | 20
metafor-1.0-1/metafor/man/permutest.rma.uni.Rd | 25
metafor-1.0-1/metafor/man/plot.infl.rma.uni.Rd | 4
metafor-1.0-1/metafor/man/plot.rma.uni.Rd | 2
metafor-1.0-1/metafor/man/predict.rma.Rd |only
metafor-1.0-1/metafor/man/print.predict.rma.Rd |only
metafor-1.0-1/metafor/man/qqnorm.rma.uni.Rd | 4
metafor-1.0-1/metafor/man/radial.rma.Rd | 10
metafor-1.0-1/metafor/man/ranktest.rma.Rd | 2
metafor-1.0-1/metafor/man/regtest.rma.Rd | 2
metafor-1.0-1/metafor/man/residuals.rma.Rd | 4
metafor-1.0-1/metafor/man/rma.mh.Rd | 8
metafor-1.0-1/metafor/man/rma.peto.Rd | 2
metafor-1.0-1/metafor/man/rma.uni.Rd | 43
metafor-1.0-1/metafor/man/transf.Rd | 9
metafor-1.0-1/metafor/man/trimfill.rma.uni.Rd | 6
metafor-1.0-1/metafor/man/vcov.rma.Rd | 2
metafor-1.0-1/metafor/man/weights.rma.uni.Rd |only
45 files changed, 1393 insertions(+), 504 deletions(-)
Path: /cran/updated | permanent link
Title: Analyses of Phylogenetics and Evolution
Diff between ape versions 2.4-1 dated 2009-11-23 and 2.5 dated 2010-02-02
More information about ape at CRAN
Description: ape provides functions for reading, writing, plotting, and
manipulating phylogenetic trees, analyses of comparative data
in a phylogenetic framework, analyses of diversification and
macroevolution, computing distances from allelic and nucleotide
data, reading nucleotide sequences, and several tools such as
Mantel's test, computation of minimum spanning tree,
generalized skyline plots, estimation of absolute evolutionary
rates and clock-like trees using mean path lengths,
non-parametric rate smoothing and penalized likelihood.
Phylogeny estimation can be done with the NJ, BIONJ, and ME
methods.
Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong,
Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel,
Gangolf Jobb, Christoph Heibl, Daniel Lawson, Vincent Lefort,
Pierre Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander,
Rainer Opgen-Rhein, Korbinian Strimmer, Damien de Vienne
Maintainer: Emmanuel Paradis
ChangeLog | 42 ++++++++++++++++++++++
DESCRIPTION | 8 ++--
R/ace.R | 12 +++---
R/biplot.pcoa.R |only
R/delta.plot.R |only
R/dist.topo.R | 34 ++++++++++--------
R/lmorigin.R |only
R/multi2di.R | 31 +++++++++++++---
R/nodelabels.R | 91 +++++++++++++++++++++++++++++++++++++++++++++++--
R/parafit.R |only
R/pcoa.R |only
R/plot.phylo.R | 8 ++--
R/print.lmorigin.R |only
R/print.parafit.R |only
R/rTrait.R |only
R/scales.R | 52 +++++++++++++++++-----------
Thanks | 8 ++--
data/HP.links.rda |only
data/gopher.D.rda |only
data/lice.D.rda |only
data/lmorigin.ex1.rda |only
data/lmorigin.ex2.rda |only
inst/CITATION | 2 -
inst/doc/MoranI.pdf |binary
man/add.scale.bar.Rd | 4 +-
man/ape-package.Rd | 2 -
man/compar.cheverud.Rd | 2 -
man/delta.plot.Rd |only
man/dist.topo.Rd | 20 ++++++++--
man/edges.Rd |only
man/lmorigin.Rd |only
man/makeLabel.Rd | 4 +-
man/makeNodeLabel.Rd | 4 +-
man/mst.Rd | 5 +-
man/nodelabels.Rd | 2 -
man/parafit.Rd |only
man/pcoa.Rd |only
man/plot.phylo.Rd | 2 -
man/rTraitCont.Rd |only
man/rTraitDisc.Rd |only
man/vcv.phylo.Rd | 1
man/write.tree.Rd | 2 -
src/delta_plot.c |only
src/rTrait.c |only
44 files changed, 256 insertions(+), 80 deletions(-)
Path: /cran/updated | permanent link