Title: Integrated Datasets for the 'rmorie' Package
Description: Integrated open data fixtures used by the 'rmorie' package for examples,
vignettes, and tests. Contains snapshots of publicly available datasets
from open-data portals built on the Comprehensive Knowledge Archive
Network ('CKAN', <https://ckan.org/>), 'Socrata'
(<https://dev.socrata.com/>), and 'Opendatasoft'
(<https://www.huwise.com/>) (Chicago, New York City, Toronto, Vancouver,
and others), Statistics Canada Canadian Centre for Justice and Community
Safety Statistics ('CCJS') tables, a multi-agent-reviewed corpus of
Ontario Special Investigations Unit ('SIU', <https://www.siu.on.ca/>)
director's reports, and synthetic fixtures for unit tests. Also ships a
small set of disclosure-control helpers for aggregate releases:
differential privacy (an exact discrete Laplace sampler for counts and
the analytic Gaussian mechanism for means, drawing on the operating
system's random source, with privacy-budget accounting), k-anonymity and
l-diversity checks, and cell supp [...truncated...]
Author: Vansh Singh Ruhela [aut, cre]
Maintainer: Vansh Singh Ruhela <vsruhela@proton.me>
Diff between rmoriedata versions 0.3.3 dated 2026-09-24 and 0.4.0 dated 2026-10-21
rmoriedata-0.3.3/rmoriedata/inst/extdata/parquet/siu_directors_reports_corpus.parquet |only rmoriedata-0.3.3/rmoriedata/man/ask.Rd |only rmoriedata-0.3.3/rmoriedata/man/clear_chicago_cache.Rd |only rmoriedata-0.3.3/rmoriedata/man/fetch_cihi_table.Rd |only rmoriedata-0.3.3/rmoriedata/man/load_chicago_data.Rd |only rmoriedata-0.3.3/rmoriedata/man/load_cihi_data_tables.Rd |only rmoriedata-0.3.3/rmoriedata/man/load_siu_reports.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_cell_suppress.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_data_catalog.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_data_checksums.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_data_dictionary.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_data_load.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_data_path.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_data_verify.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_dp_gaussian_mean.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_dp_laplace_count.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_dp_laplace_histogram.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_k_anonymity_verify.Rd |only rmoriedata-0.3.3/rmoriedata/man/morie_l_diversity_verify.Rd |only rmoriedata-0.3.3/rmoriedata/tests/testthat/_problems |only rmoriedata-0.3.3/rmoriedata/tests/testthat/testthat-problems.rds |only rmoriedata-0.4.0/rmoriedata/DESCRIPTION | 29 rmoriedata-0.4.0/rmoriedata/MD5 | 361 ++++--- rmoriedata-0.4.0/rmoriedata/NAMESPACE | 47 - rmoriedata-0.4.0/rmoriedata/NEWS.md | 178 +++ rmoriedata-0.4.0/rmoriedata/R/aaa_parquet.R | 369 ++++--- rmoriedata-0.4.0/rmoriedata/R/ask.R | 148 ++- rmoriedata-0.4.0/rmoriedata/R/bl_compat.R |only rmoriedata-0.4.0/rmoriedata/R/core_backend.R | 45 rmoriedata-0.4.0/rmoriedata/R/data.R | 8 rmoriedata-0.4.0/rmoriedata/R/data_hub.R |only rmoriedata-0.4.0/rmoriedata/R/data_store.R | 102 +- rmoriedata-0.4.0/rmoriedata/R/download_progress.R |only rmoriedata-0.4.0/rmoriedata/R/dp.R | 469 +++++++--- rmoriedata-0.4.0/rmoriedata/R/k_anonymity.R | 282 +++--- rmoriedata-0.4.0/rmoriedata/R/load_chicago_data.R | 96 +- rmoriedata-0.4.0/rmoriedata/R/load_cihi.R | 46 rmoriedata-0.4.0/rmoriedata/R/load_siu_reports.R | 74 + rmoriedata-0.4.0/rmoriedata/R/provenance.R | 29 rmoriedata-0.4.0/rmoriedata/R/vic_data.R | 14 rmoriedata-0.4.0/rmoriedata/R/zzz.R | 21 rmoriedata-0.4.0/rmoriedata/inst/CITATION | 5 rmoriedata-0.4.0/rmoriedata/inst/NOTICE |only rmoriedata-0.4.0/rmoriedata/inst/WORDLIST |only rmoriedata-0.4.0/rmoriedata/inst/doc/rmoriedata.R | 32 rmoriedata-0.4.0/rmoriedata/inst/doc/rmoriedata.Rmd | 46 rmoriedata-0.4.0/rmoriedata/inst/doc/rmoriedata.html | 95 +- rmoriedata-0.4.0/rmoriedata/inst/extdata/_catalog.csv | 216 ++-- rmoriedata-0.4.0/rmoriedata/inst/extdata/_checksums.csv | 209 ++-- rmoriedata-0.4.0/rmoriedata/inst/extdata/_checksums.sig | 2 rmoriedata-0.4.0/rmoriedata/inst/extdata/_schema.csv | 5 rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_2020_2022_useofforce_agrregatesummarybyyear_2020_2022.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_2020_2022_useofforce_detaileddataset_2020_2022.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_2023_uof_individual_records.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_2023_uof_main_records.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_2023_uof_probe_cycle_records.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_2023_uof_weapon_records_invaliddata.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_2024_uof_individual_records.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_2024_uof_main_records.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_2024_uof_probe_cycle_records.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_2024_uof_weapon_records.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_uof_detailed_dataset_2020_2022_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/arsau_uof_individual_records_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/calgary_community_crime_stats_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/calgary_fire_response_calls_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/calgary_fire_stations.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/calgary_opendata_bulk_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/calgary_opendata_crime_adjacent_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/chicago_iucr_codes.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/chicago_neighborhoods.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/chicago_opendata_bulk_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/cihi_data_tables.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/cpads_pumf_synthetic.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/edmonton_opendata_bulk_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/edmonton_opendata_crime_adjacent_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/montreal_opendata_bulk_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/montreal_sim_intervention_types.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/montreal_sim_interventions_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/nibrs_synthetic.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/nist_rds_synthetic.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/nyc_ntas_2020.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/nyc_nypd_offense_codes.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/nyc_opendata_bulk_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/nyc_zctas.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_a01_restrictive_confinement_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_b01_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_b01_segregation_detailed_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_b02_segregation_total_days_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_b03_seg_alerts_by_institution_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_b04_seg_consecutive_by_region_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_b05_seg_consecutive_lengths_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_b06_seg_reason_by_institution_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_b07_seg_alerts_by_gender_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_b08_seg_consecutive_by_institution_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_b09_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_b09_seg_n_times_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c01_individuals_total_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c02_individuals_by_institution_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c03_individuals_race_by_gender_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c04_individuals_race_by_region_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c05_individuals_religion_by_region_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c06_individuals_age_by_region_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c07_individuals_alerts_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c08_individuals_religion_by_gender_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c09_individuals_age_by_gender_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c10_aggregate_durations_by_institution_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c11_aggregate_lengths_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c11_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_c12_aggregate_durations_by_region_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_d01_deaths_in_custody_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_d02_deaths_by_gender_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_d03_deaths_by_race_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_d04_deaths_by_religion_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_d05_deaths_by_age_category_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_d06_cause_by_alert_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/otis_d07_alerts_by_housing_unit_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/ottawa_opendata_bulk_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/ottawa_opendata_crime_adjacent_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/samples_otis_b01_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/samples_otis_b09_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/samples_otis_c11_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/samples_tps_assault_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/siu_directors_reports.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/siu_drid_manifest.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/to_hood_158_140_crosswalk.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/to_neighbourhood_improvement_areas.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/to_neighbourhoods_140.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/to_neighbourhoods_158.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/toronto_ambulance_stations.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/toronto_opendata_bulk_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/toronto_opendata_crime_adjacent_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/tps_arcgis_hub_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/tps_assault_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vancouver_community_food_markets.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vancouver_disability_parking.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vancouver_graffiti_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vancouver_opendata_bulk_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vancouver_opendata_catalog.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vancouver_public_art.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vic_alleged_offender_incidents.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vic_criminal_incidents.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vic_family_incidents.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vic_indigenous_family_incidents.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vic_indigenous_victim_reports.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vic_lga_criminal_incidents.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vic_lga_family_incidents.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vic_lga_victim_reports.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vic_recorded_offences.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vic_victim_reports.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/parquet/vpd_crime_sample.parquet |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/siu_directors_reports.csv.gz |binary rmoriedata-0.4.0/rmoriedata/inst/extdata/siu_drid_manifest.csv.gz |binary rmoriedata-0.4.0/rmoriedata/inst/smoke |only rmoriedata-0.4.0/rmoriedata/man/arrest_sample.Rd | 4 rmoriedata-0.4.0/rmoriedata/man/cellsupp.Rd |only rmoriedata-0.4.0/rmoriedata/man/chiclr.Rd |only rmoriedata-0.4.0/rmoriedata/man/chiload.Rd |only rmoriedata-0.4.0/rmoriedata/man/cihiget.Rd |only rmoriedata-0.4.0/rmoriedata/man/cihitbls.Rd |only rmoriedata-0.4.0/rmoriedata/man/complaint_sample.Rd | 4 rmoriedata-0.4.0/rmoriedata/man/dpbudget.Rd |only rmoriedata-0.4.0/rmoriedata/man/dpgmean.Rd |only rmoriedata-0.4.0/rmoriedata/man/dplapcnt.Rd |only rmoriedata-0.4.0/rmoriedata/man/dplaphist.Rd |only rmoriedata-0.4.0/rmoriedata/man/dpspent.Rd |only rmoriedata-0.4.0/rmoriedata/man/figures |only rmoriedata-0.4.0/rmoriedata/man/hostcat.Rd |only rmoriedata-0.4.0/rmoriedata/man/kanonvrf.Rd |only rmoriedata-0.4.0/rmoriedata/man/ldivvrf.Rd |only rmoriedata-0.4.0/rmoriedata/man/mdask.Rd |only rmoriedata-0.4.0/rmoriedata/man/mdcat.Rd |only rmoriedata-0.4.0/rmoriedata/man/mddict.Rd |only rmoriedata-0.4.0/rmoriedata/man/mdllmconf.Rd |only rmoriedata-0.4.0/rmoriedata/man/mdload.Rd |only rmoriedata-0.4.0/rmoriedata/man/mdpath.Rd |only rmoriedata-0.4.0/rmoriedata/man/mdsums.Rd |only rmoriedata-0.4.0/rmoriedata/man/mdverify.Rd |only rmoriedata-0.4.0/rmoriedata/man/morie_core.Rd | 44 rmoriedata-0.4.0/rmoriedata/man/morie_read_parquet.Rd | 2 rmoriedata-0.4.0/rmoriedata/man/morie_write_parquet.Rd | 5 rmoriedata-0.4.0/rmoriedata/man/rmoriedata-package.Rd | 17 rmoriedata-0.4.0/rmoriedata/man/rmoriedata-victoria.Rd | 12 rmoriedata-0.4.0/rmoriedata/man/siuload.Rd |only rmoriedata-0.4.0/rmoriedata/src/Makevars |only rmoriedata-0.4.0/rmoriedata/src/Makevars.win |only rmoriedata-0.4.0/rmoriedata/src/gzip.c |only rmoriedata-0.4.0/rmoriedata/src/rmoriedata_init.c | 11 rmoriedata-0.4.0/rmoriedata/src/snappy.c |only rmoriedata-0.4.0/rmoriedata/tests/testthat/helper-bricklayer.R |only rmoriedata-0.4.0/rmoriedata/tests/testthat/test-ask-shell.R | 142 +-- rmoriedata-0.4.0/rmoriedata/tests/testthat/test-bl-compat.R |only rmoriedata-0.4.0/rmoriedata/tests/testthat/test-codec-hostile.R |only rmoriedata-0.4.0/rmoriedata/tests/testthat/test-core-backend.R | 26 rmoriedata-0.4.0/rmoriedata/tests/testthat/test-data-hub.R |only rmoriedata-0.4.0/rmoriedata/tests/testthat/test-data-integrity.R | 42 rmoriedata-0.4.0/rmoriedata/tests/testthat/test-data-store.R | 30 rmoriedata-0.4.0/rmoriedata/tests/testthat/test-download-progress.R |only rmoriedata-0.4.0/rmoriedata/tests/testthat/test-dp.R | 153 ++- rmoriedata-0.4.0/rmoriedata/tests/testthat/test-k-anonymity.R | 120 +- rmoriedata-0.4.0/rmoriedata/tests/testthat/test-load_chicago_data.R | 34 rmoriedata-0.4.0/rmoriedata/tests/testthat/test-load_siu_reports.R | 95 +- rmoriedata-0.4.0/rmoriedata/tests/testthat/test-login-profile.R |only rmoriedata-0.4.0/rmoriedata/tests/testthat/test-network-guards.R | 96 +- rmoriedata-0.4.0/rmoriedata/tests/testthat/test-parquet-codecs.R |only rmoriedata-0.4.0/rmoriedata/tests/testthat/test-parquet-encoding.R | 4 rmoriedata-0.4.0/rmoriedata/tests/testthat/test-parquet-hostile.R |only rmoriedata-0.4.0/rmoriedata/tests/testthat/test-parquet-store.R | 32 rmoriedata-0.4.0/rmoriedata/tests/testthat/test-provenance-path.R | 12 rmoriedata-0.4.0/rmoriedata/tests/testthat/test-r7-data.R |only rmoriedata-0.4.0/rmoriedata/tests/testthat/test-signing-pin.R | 17 rmoriedata-0.4.0/rmoriedata/vignettes/rmoriedata.Rmd | 46 212 files changed, 2472 insertions(+), 1404 deletions(-)
Title: Access to the 'DraCor' API
Description: Provide an interface for 'Drama Corpora Project' ('DraCor') API: <https://dracor.org/documentation/api>.
Author: Ivan Pozdniakov [aut, cre]
Maintainer: Ivan Pozdniakov <bucherr@yandex.ru>
Diff between rdracor versions 1.0.6 dated 2025-09-29 and 1.1.0 dated 2026-10-21
rdracor-1.0.6/rdracor/man/figures/README-unnamed-chunk-11-1.png |only rdracor-1.0.6/rdracor/man/figures/README-unnamed-chunk-2-1.png |only rdracor-1.0.6/rdracor/man/figures/README-unnamed-chunk-3-1.png |only rdracor-1.0.6/rdracor/man/figures/README-unnamed-chunk-4-1.png |only rdracor-1.0.6/rdracor/man/figures/README-unnamed-chunk-7-1.png |only rdracor-1.0.6/rdracor/man/figures/README-unnamed-chunk-8-1.png |only rdracor-1.0.6/rdracor/man/figures/README-unnamed-chunk-9-1.png |only rdracor-1.1.0/rdracor/DESCRIPTION | 12 rdracor-1.1.0/rdracor/MD5 | 92 +- rdracor-1.1.0/rdracor/NAMESPACE | 45 - rdracor-1.1.0/rdracor/NEWS.md | 47 + rdracor-1.1.0/rdracor/R/core.R | 246 ++++-- rdracor-1.1.0/rdracor/R/dracor.R | 76 + rdracor-1.1.0/rdracor/R/dracor_meta.R | 39 rdracor-1.1.0/rdracor/R/net.R | 391 +++++----- rdracor-1.1.0/rdracor/R/play.R | 76 + rdracor-1.1.0/rdracor/R/tei_to_df.R | 27 rdracor-1.1.0/rdracor/R/text.R | 17 rdracor-1.1.0/rdracor/README.md | 280 +++---- rdracor-1.1.0/rdracor/build/partial.rdb |binary rdracor-1.1.0/rdracor/inst/CITATION | 32 rdracor-1.1.0/rdracor/man/dracor_api.Rd | 32 rdracor-1.1.0/rdracor/man/dracor_api_available.Rd |only rdracor-1.1.0/rdracor/man/dracor_api_info.Rd | 5 rdracor-1.1.0/rdracor/man/dracor_sparql.Rd | 4 rdracor-1.1.0/rdracor/man/figures/README-unnamed-chunk-10-1.png |only rdracor-1.1.0/rdracor/man/figures/README-unnamed-chunk-13-1.png |only rdracor-1.1.0/rdracor/man/figures/README-unnamed-chunk-6-1.png |binary rdracor-1.1.0/rdracor/man/get_character_plays.Rd | 6 rdracor-1.1.0/rdracor/man/get_dracor.Rd | 6 rdracor-1.1.0/rdracor/man/get_dracor_meta.Rd | 2 rdracor-1.1.0/rdracor/man/get_net_cooccur_edges.Rd | 2 rdracor-1.1.0/rdracor/man/get_net_cooccur_gexf.Rd | 2 rdracor-1.1.0/rdracor/man/get_net_cooccur_graphml.Rd | 4 rdracor-1.1.0/rdracor/man/get_net_cooccur_igraph.Rd | 36 rdracor-1.1.0/rdracor/man/get_net_cooccur_metrics.Rd | 2 rdracor-1.1.0/rdracor/man/get_net_relations_igraph.Rd | 23 rdracor-1.1.0/rdracor/man/get_play_characters.Rd | 6 rdracor-1.1.0/rdracor/man/get_play_metadata.Rd | 2 rdracor-1.1.0/rdracor/man/get_play_rdf.Rd | 2 rdracor-1.1.0/rdracor/man/get_text_chr_spoken.Rd | 6 rdracor-1.1.0/rdracor/man/get_text_tei.Rd | 8 rdracor-1.1.0/rdracor/man/label_cooccur_igraph.Rd | 4 rdracor-1.1.0/rdracor/man/tei_to_df.Rd | 9 rdracor-1.1.0/rdracor/tests/testthat/helper-dracor.R |only rdracor-1.1.0/rdracor/tests/testthat/test-core.R | 63 + rdracor-1.1.0/rdracor/tests/testthat/test-dracor.R | 23 rdracor-1.1.0/rdracor/tests/testthat/test-dracor_meta.R | 25 rdracor-1.1.0/rdracor/tests/testthat/test-net.R | 51 + rdracor-1.1.0/rdracor/tests/testthat/test-offline.R |only rdracor-1.1.0/rdracor/tests/testthat/test-play.R | 9 rdracor-1.1.0/rdracor/tests/testthat/test-tei_to_df.R | 24 rdracor-1.1.0/rdracor/tests/testthat/test-text.R | 6 53 files changed, 1157 insertions(+), 585 deletions(-)
Title: Implementations of Various Slice Samplers
Description: Implementations of the quantile slice sampler of Heiner et al. (2026+, in preparation) <doi:10.48550/arXiv.2407.12608> as well as other popular slice samplers are provided.
Helper functions for specifying pseudo-target distributions are included, both for diagnostics and for tuning the quantile slice sampler.
Other implemented methods include the generalized elliptical slice sampler of Nishihara et al. (2014) <https://jmlr.org/papers/v15/nishihara14a.html>,
latent slice sampler of Li and Walker (2023) <doi:10.1016/j.csda.2022.107652>, and stepping-out slice sampler of Neal (2003) <doi:10.1214/aos/1056562461>,
as well as independence Metropolis-Hastings and random-walk Metropolis samplers.
Author: Matthew Heiner [aut] ,
David B. Dahl [aut, cre] ,
Sam Johnson [aut]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between qslice versions 0.3.1 dated 2024-05-30 and 0.4.0 dated 2026-10-21
qslice |only 1 file changed
Title: Manipulate 'GDX' Files
Description: Read and write 'GDX' files ('GAMS' data exchange) and convert
parameters, sets and variables to data frames. Backed by the
'GAMS'-maintained 'gamstransfer' package; no compiled code is shipped.
See <https://www.gams.com/latest/docs/UG_GDX.html> for the 'GDX' format.
Author: Laurent Drouet [aut, cre]
Maintainer: Laurent Drouet <ldrouet@pm.me>
Diff between gdxtools versions 1.1.1 dated 2026-05-28 and 1.2.0 dated 2026-10-21
DESCRIPTION | 8 ++++---- MD5 | 11 +++++++---- NEWS.md | 9 +++++++++ R/gdxrrw.R | 6 ++++++ man/igdx.Rd | 5 +++++ tests/testthat/gdxapi.gdx |only tests/testthat/test_gdxapi.R |only tests/testthat/test_igdx.R |only 8 files changed, 31 insertions(+), 8 deletions(-)
Title: Methods Based on the e-Closure Principle
Description: Implements several methods for False Discovery Rate control based on the e-Closure Principle,
in particular the Closed Benjamini-Hochberg, Closed e-Benjamini-Hochberg, Closed Su and Closed Benjamini-Yekutieli procedures.
Author: Jelle Goeman [aut, cre]
Maintainer: Jelle Goeman <j.j.goeman@lumc.nl>
Diff between eClosure versions 0.9.6 dated 2026-08-26 and 0.9.7 dated 2026-10-21
ChangeLog | 9 +++++++-- DESCRIPTION | 10 +++++----- MD5 | 32 ++++++++++++++++---------------- R/cBH_wrapper.R | 7 ++++--- R/cBY_wrapper.R | 7 ++----- R/cSu_wrapper.R | 2 +- R/ceBH_wrapper.R | 4 ++-- R/eClosure-package.R | 10 +++++++--- inst/CITATION | 2 +- man/closedBH.Rd | 11 ++++++++--- man/closedBY.Rd | 6 ++---- man/closedSu.Rd | 2 +- man/closedeBH.Rd | 2 +- man/eClosure.Rd | 9 +++++++-- src/cSu.cpp | 16 +++++++++++----- src/ceBH.cpp | 2 +- tests/testthat/test_ceBH.R | 17 ++++++++++++++++- 17 files changed, 92 insertions(+), 56 deletions(-)
Title: File Encryption with the 'age' Format
Description: An idiomatic R interface to the 'age' file encryption format
(<https://age-encryption.org/v1>), backed by a vendored copy of the
'agec' C implementation (<https://git.sr.ht/~min/agec>). Encrypt and
decrypt raw vectors, files, and strings for one or more X25519 recipients
or with a passphrase, with optional ASCII armor. Cryptography is vendored
and randomness is drawn from the operating system, so the package has no
external library dependencies.
Author: Pedro Baltazar [aut, cre, cph],
agec authors [ctb, cph]
Maintainer: Pedro Baltazar <pedrobtz@gmail.com>
Diff between agecrypt versions 0.1.0 dated 2026-08-05 and 0.1.1 dated 2026-10-21
DESCRIPTION | 10 MD5 | 73 + NEWS.md | 35 R/file.R | 49 - R/identity.R | 74 - R/passphrase.R | 84 +- R/text.R | 40 - README.md | 17 inst/COPYRIGHTS | 53 - inst/WORDLIST | 17 man/agecrypt-package.Rd | 1 src/agec/agec.h | 2 src/agec/agecore.c | 130 +-- src/agec/header.c | 44 - src/agec/header.h | 9 src/agec/io.c | 37 src/agec/keyenc.c | 4 src/agec/parse.c | 18 src/agec/payload.c | 9 src/agec/scrypt.c | 6 src/agec/x25519.c | 3 src/binding.c | 580 +++++++++++---- src/init.c | 4 src/platform.c | 8 src/platform.h |only tests/testthat.R | 10 tests/testthat/fixtures/interop/sweep/size-73728-arm.age |only tests/testthat/fixtures/interop/sweep/size-73728-bin.age |only tests/testthat/fixtures/interop/sweep/size-8000-arm.age |only tests/testthat/fixtures/interop/sweep/size-8000-bin.age |only tests/testthat/fixtures/interop/sweep/size-8192-arm.age |only tests/testthat/fixtures/interop/sweep/size-8192-bin.age |only tests/testthat/fixtures/vectors/stanza_not_canonical |only tests/testthat/helper-age.R | 4 tests/testthat/test-binding-hardening.R |only tests/testthat/test-errors.R | 5 tests/testthat/test-file-safety.R | 54 + tests/testthat/test-identity.R | 5 tests/testthat/test-interop-fixtures.R | 10 tests/testthat/test-native-safety.R | 30 tests/testthat/test-roundtrip.R | 65 + tests/testthat/test-validation.R | 41 - 42 files changed, 1020 insertions(+), 511 deletions(-)
Title: Reproducible Data Capsules with Provenance and Fallback
Description: For analyzing published and unpublished tables, from open-data
portals and statistical agencies to a researcher's own data, so that a
result can be traced to the exact data behind it and checked again
afterwards. A 'capsule' records where
each source came from, its Secure Hash Algorithm 256 ('SHA-256') hash,
the schema it should have and an archived copy in the Internet Archive
'Wayback Machine' ('web.archive.org'); sources are found through
the Comprehensive Knowledge Archive Network ('CKAN', 'ckan.org').
Run again, a capsule says whether each source still matches and, if it
does not, how its distribution moved (Kolmogorov-Smirnov, chi-square,
population stability index and 'Benford' first-digit screens), and when a
source cannot be reached it runs on schema-driven synthetic data that is
marked as such. Capsules can be signed with keyed hashes ('HMAC-SHA-256',
RFC 2104) or with the post-quantum signature standards 'ML-DSA' (FIPS
204), 'SLH-DSA' (FIPS 205) and 'XMSS' (RFC 8391), implem [...truncated...]
Author: Vansh Singh Ruhela [aut, cre]
Maintainer: Vansh Singh Ruhela <vsruhela@proton.me>
Diff between rmoriebricklayer versions 0.5.1 dated 2026-09-21 and 1.0.0 dated 2026-10-21
rmoriebricklayer-0.5.1/rmoriebricklayer/build/partial.rdb |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/capsules.R |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/capsules.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/capsules.html |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/categorical-integrity.R |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/categorical-integrity.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/categorical-integrity.html |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/describe.R |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/describe.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/describe.html |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/drift.R |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/drift.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/drift.html |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/getting-started.R |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/getting-started.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/getting-started.html |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/provenance.R |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/provenance.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/provenance.html |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/tables.R |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/tables.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/tables.html |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/yoy.R |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/yoy.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/inst/doc/yoy.html |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/admissions.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/adp_from_counts.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/agent_bundle.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/analyse_table.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/apply_schema_validation.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/ascii_fallback.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/audit_categories.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/band_sensitivity.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/band_values.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/benford_test.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/bricklayer_fetch.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/bricklayer_fetch_parse_siu.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/bricklayer_fetch_siu.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/bricklayer_json_from_json.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/bricklayer_json_to_json.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/bricklayer_parse_siu.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/bricklayer_siu_iso_date.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/bricklayer_siu_resolve_so.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/bricklayer_siu_schema.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/bricklayer_siu_text.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/capsule_attest.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/capsule_bundle.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/capsule_drift.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/capsule_falsify.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/capsule_power.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/capsule_report.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/capsule_sign.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/capsule_verify.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/capture_dependencies.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/capture_environment.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/cert_chain_verify.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/cert_parse.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/change_envelope.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/chunk_file.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/cite_capsule.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/clean_column_names.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_blake2b.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_bootstrap_mean.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_cov.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_crc32.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_gamma_cdf.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_hawkes_nll.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_ipw_weights.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_moments.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_normal_logpdf.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_normal_pdf.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_sha256.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_sha512.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/core_weighted.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/correlation_table.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/count_trend.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/cramers_v.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/decode_codes.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/decode_labelled.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/derive_key.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/digest_object.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/download_data.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/drift_calibrate.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/drift_chisq.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/drift_homogeneity.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/drift_ks.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/drift_psi.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/duplicate_rows.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/eb_rates.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/environment_diff.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/evalue_rr.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/expand_bands.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/expected_counts.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/falsify_family.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/fips_key.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/fips_keygen.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/fips_mu.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/fips_sizes.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/fiscal_year_label.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/frequency_table.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/friendly_download.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/funnel_limits.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/guard_binary.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/guard_levels.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/guard_recode.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/hill_tail_index.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/hurwitz_zeta.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/infer_schema.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/inline_hist.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/kem_decapsulate.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/kem_encapsulate.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/kem_keygen.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/kem_sizes.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/load_provenance.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/mahalanobis_outliers.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/make_manifest.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/make_synthetic_column.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/make_synthetic_csv.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/manifest_canonical.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/manifest_recompute.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/manifest_record_seed.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/mcar_test.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/missing_runs.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/missingness_map.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/missingness_pattern.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/missingness_summary.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/morans_i.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/odds_ratio_check.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/oqs_keygen.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/parse_bands.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/period_days.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/pqc_backends.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/pqc_keygen.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/prereg_declare.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/profile_columns.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/published_bounds.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/random_bytes.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rate.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rate_change.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/recode_manifest.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/record.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/region_coverage.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/region_map_compare.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/region_map_from_points.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/region_map_integrity.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/region_map_second_route.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/relabel.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/relabel_forensics.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/report_analysis.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/report_markdown.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/resolve_via_arcgis.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/resolve_via_ckan.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/resolve_via_ckan_search.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/resolve_via_socrata.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/revocation_fetch.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_base64.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_chain.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_core_rank.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_core_robust.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_core_spread.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_core_stats.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_core_trimmed.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_distinct.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_drop.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_file_digest.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_json_gzip.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_json_serialize.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_keyed_digest.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_merkle.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_online.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_print_methods.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_reservoir.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rmbl_rule_library.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/rule.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/scan_adjust.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/sha256_file.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/share.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/signing_public_key.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/sir.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/stay_summary.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/step_change.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/stock_flow.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/timestamp_verify.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/to_ascii.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/top_correlations.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/transfer_verify.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/trend_test.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/use_capsule_template.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/validate_rules.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/validate_schema.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/verify_capsule.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/verify_marginals.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/verify_recode.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/verify_sha256.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/wayback_snapshot_url.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/wayback_snapshot_url_native.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/write_manifest_json.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/write_recode_manifest.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/write_summary_txt.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/write_text_fallback.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/yoy_bounds.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/yoy_delim.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/yoy_label.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/yoy_palettes.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/yoy_pvalues.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/yoy_render.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/yoy_summary.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/man/yoy_write.Rd |only rmoriebricklayer-0.5.1/rmoriebricklayer/src/Makevars |only rmoriebricklayer-0.5.1/rmoriebricklayer/vignettes/capsules.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/vignettes/categorical-integrity.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/vignettes/describe.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/vignettes/drift.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/vignettes/getting-started.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/vignettes/provenance.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/vignettes/tables.Rmd |only rmoriebricklayer-0.5.1/rmoriebricklayer/vignettes/yoy.Rmd |only rmoriebricklayer-1.0.0/rmoriebricklayer/DESCRIPTION | 90 rmoriebricklayer-1.0.0/rmoriebricklayer/MD5 | 1271 ++-- rmoriebricklayer-1.0.0/rmoriebricklayer/NAMESPACE | 775 +- rmoriebricklayer-1.0.0/rmoriebricklayer/NEWS.md | 3112 +++++++++- rmoriebricklayer-1.0.0/rmoriebricklayer/R/aaa_input_guards.R | 619 + rmoriebricklayer-1.0.0/rmoriebricklayer/R/aaa_local_seed.R | 63 rmoriebricklayer-1.0.0/rmoriebricklayer/R/agent_bundle.R | 119 rmoriebricklayer-1.0.0/rmoriebricklayer/R/air_dispersion.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/analyse_table.R | 478 + rmoriebricklayer-1.0.0/rmoriebricklayer/R/archive_capture.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/areal.R | 602 + rmoriebricklayer-1.0.0/rmoriebricklayer/R/attest.R | 463 + rmoriebricklayer-1.0.0/rmoriebricklayer/R/bands.R | 519 + rmoriebricklayer-1.0.0/rmoriebricklayer/R/bundle.R | 271 rmoriebricklayer-1.0.0/rmoriebricklayer/R/capsule_check.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/capsule_cli.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/capsule_template.R | 142 rmoriebricklayer-1.0.0/rmoriebricklayer/R/categorical_guard.R | 1292 ++-- rmoriebricklayer-1.0.0/rmoriebricklayer/R/census.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/chain.R | 255 rmoriebricklayer-1.0.0/rmoriebricklayer/R/cli.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/cli_compat.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/compat_0_5.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/compat_names.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/compat_s3.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/compute_footprint.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/concentration.R | 674 +- rmoriebricklayer-1.0.0/rmoriebricklayer/R/core.R | 219 rmoriebricklayer-1.0.0/rmoriebricklayer/R/core_hawkes_fit.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/core_stats.R | 963 ++- rmoriebricklayer-1.0.0/rmoriebricklayer/R/crypto_extra.R | 309 rmoriebricklayer-1.0.0/rmoriebricklayer/R/custody.R | 511 + rmoriebricklayer-1.0.0/rmoriebricklayer/R/dashboard.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/dashboard_cards.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/dashboard_modules.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/dashboard_search.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/dashboard_specs.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/data_hub.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/digest_extra.R | 574 + rmoriebricklayer-1.0.0/rmoriebricklayer/R/download_progress.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/drbg.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/drift.R | 922 ++ rmoriebricklayer-1.0.0/rmoriebricklayer/R/drift_viz.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/dstfit.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/eda.R | 418 - rmoriebricklayer-1.0.0/rmoriebricklayer/R/eda2.R | 225 rmoriebricklayer-1.0.0/rmoriebricklayer/R/explain_error.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/falsify.R | 183 rmoriebricklayer-1.0.0/rmoriebricklayer/R/fetch_native.R | 174 rmoriebricklayer-1.0.0/rmoriebricklayer/R/fetch_siu.R | 105 rmoriebricklayer-1.0.0/rmoriebricklayer/R/fetch_verified.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/hawkes_more.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/hotspot.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/hqc.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/indigenous.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/indigenous_frameworks.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/indigenous_mental_health.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/json_gzip.R | 147 rmoriebricklayer-1.0.0/rmoriebricklayer/R/json_native.R | 1565 ++--- rmoriebricklayer-1.0.0/rmoriebricklayer/R/justice.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/kem.R | 372 - rmoriebricklayer-1.0.0/rmoriebricklayer/R/ledger.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/lib_capsule.R | 511 + rmoriebricklayer-1.0.0/rmoriebricklayer/R/lib_data_loader.R | 1369 +++- rmoriebricklayer-1.0.0/rmoriebricklayer/R/lib_helpers.R | 575 + rmoriebricklayer-1.0.0/rmoriebricklayer/R/lib_manifest.R | 654 +- rmoriebricklayer-1.0.0/rmoriebricklayer/R/lib_synthetic.R | 344 - rmoriebricklayer-1.0.0/rmoriebricklayer/R/llm_answer_cache.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/llm_config.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/llm_knowledge.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/llm_native.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/llm_providers.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/mcar.R | 157 rmoriebricklayer-1.0.0/rmoriebricklayer/R/nameconstraints.R | 119 rmoriebricklayer-1.0.0/rmoriebricklayer/R/panel_causal.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/parse_siu.R | 390 - rmoriebricklayer-1.0.0/rmoriebricklayer/R/plots.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/policy.R | 46 rmoriebricklayer-1.0.0/rmoriebricklayer/R/policy_evaluation.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/policy_plots.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/pollution.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/power.R | 175 rmoriebricklayer-1.0.0/rmoriebricklayer/R/prereg.R | 308 rmoriebricklayer-1.0.0/rmoriebricklayer/R/print_methods.R | 273 rmoriebricklayer-1.0.0/rmoriebricklayer/R/profile_extra.R | 385 - rmoriebricklayer-1.0.0/rmoriebricklayer/R/progress_anim.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/published_bounds.R | 320 - rmoriebricklayer-1.0.0/rmoriebricklayer/R/rate.R | 641 +- rmoriebricklayer-1.0.0/rmoriebricklayer/R/region_map.R | 628 +- rmoriebricklayer-1.0.0/rmoriebricklayer/R/report.R | 233 rmoriebricklayer-1.0.0/rmoriebricklayer/R/repro.R | 325 - rmoriebricklayer-1.0.0/rmoriebricklayer/R/revocation.R | 305 rmoriebricklayer-1.0.0/rmoriebricklayer/R/rmbldemo.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/rule_lib.R | 659 +- rmoriebricklayer-1.0.0/rmoriebricklayer/R/rules.R | 196 rmoriebricklayer-1.0.0/rmoriebricklayer/R/scan_adjust.R | 236 rmoriebricklayer-1.0.0/rmoriebricklayer/R/schema_infer.R | 108 rmoriebricklayer-1.0.0/rmoriebricklayer/R/search.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/search_figs.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/services.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/sha256_native.R | 13 rmoriebricklayer-1.0.0/rmoriebricklayer/R/sign.R | 1841 ++++- rmoriebricklayer-1.0.0/rmoriebricklayer/R/sketch.R | 363 - rmoriebricklayer-1.0.0/rmoriebricklayer/R/spread.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/srr-stats-standards.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/survey.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/timestamp.R | 669 +- rmoriebricklayer-1.0.0/rmoriebricklayer/R/trc.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/trend.R | 669 +- rmoriebricklayer-1.0.0/rmoriebricklayer/R/wayback_save.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/x509.R | 839 +- rmoriebricklayer-1.0.0/rmoriebricklayer/R/xmss_state.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/R/yoy.R | 511 + rmoriebricklayer-1.0.0/rmoriebricklayer/R/yoy_labels.R | 156 rmoriebricklayer-1.0.0/rmoriebricklayer/R/yoy_output.R | 262 rmoriebricklayer-1.0.0/rmoriebricklayer/R/yoy_render.R | 317 - rmoriebricklayer-1.0.0/rmoriebricklayer/R/yoy_write.R | 259 rmoriebricklayer-1.0.0/rmoriebricklayer/R/zzz.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/README.md | 868 ++ rmoriebricklayer-1.0.0/rmoriebricklayer/build/vignette.rds |binary rmoriebricklayer-1.0.0/rmoriebricklayer/cleanup |only rmoriebricklayer-1.0.0/rmoriebricklayer/configure |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/CITATION | 4 rmoriebricklayer-1.0.0/rmoriebricklayer/inst/COPYRIGHTS |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/WORDLIST | 1172 +++ rmoriebricklayer-1.0.0/rmoriebricklayer/inst/bin |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/compat |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/ctcheck |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/applied-analyses.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/applied-analyses.Rmd |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/applied-analyses.html |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/capsules-and-provenance.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/capsules-and-provenance.Rmd |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/capsules-and-provenance.html |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/describing-data-and-tables.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/describing-data-and-tables.Rmd |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/describing-data-and-tables.html |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/integrity-and-cryptography.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/integrity-and-cryptography.Rmd |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/integrity-and-cryptography.html |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/statistical-methods.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/statistical-methods.Rmd |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/doc/statistical-methods.html |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/drift |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/dudect |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/carbon_intensity.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/indigenous_census_households.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/indigenous_census_population.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/indigenous_health_indicators.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/indigenous_infant_mortality.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/indigenous_life_expectancy.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/indigenous_mental_health.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/indigenous_suicidal_ideation.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/indigenous_wellbeing.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/ledger_sample.json |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/ocj_courts.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/ocj_dispositions.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/ocj_flow_ontario.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/ocj_offence_groups.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/ocj_time_to_disposition.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/timezone_countries.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/extdata/tps_break_enter_d14_2024.csv |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/fuzz |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/include/rmoriebricklayer.h | 60 rmoriebricklayer-1.0.0/rmoriebricklayer/inst/schemas |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/scripts/gen_barrier.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/scripts/indigenous |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/scripts/setup_and_run.R | 68 rmoriebricklayer-1.0.0/rmoriebricklayer/inst/services |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/smoke |only rmoriebricklayer-1.0.0/rmoriebricklayer/inst/tvla |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/admits.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/adp.Rd | 45 rmoriebricklayer-1.0.0/rmoriebricklayer/man/adpcnts.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/agentbndl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/agestd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/aipwcf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/alos.Rd | 29 rmoriebricklayer-1.0.0/rmoriebricklayer/man/anltab.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/arccap.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/asciifb.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/attrfrac.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/audcats.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/b64.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/bacondcmp.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/baltab.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/bandsens.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/bandvals.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/benfordtst.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/blcli.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/bldl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/blfetch.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/blpal.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/blprog.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/bufasgn.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/capdeps.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/capenv.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/caseflow.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cblake2b.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cbootmean.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/ccovm.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/ccrc32.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/certchnvrf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/certprs.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cgamcdf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/chgenv.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/chn.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/chnkfile.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/chwkfit.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/chwkjit.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/chwknll.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/chwkres.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/chwksim.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cipw.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/citecps.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/clncolnms.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/clrdcmp.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cmlrisk.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cmom.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cnormlpdf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cnormpdf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cnscwb.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cnsprof.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cnsstd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cnttrnd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/co2fp.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/co2int.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cohtrnd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/commidx.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/concentration.Rd | 98 rmoriebricklayer-1.0.0/rmoriebricklayer/man/connassoc.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cortbl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cpsatst.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cpsbndl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cpschk.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cpsdrft.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cpsfals.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cpspwr.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cpsrfrsh.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cpsrpt.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cpsseal.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cpssign.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cpsvrf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cramerv.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/crank.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/crfpm25.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/crmdens.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/crob.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/csha256.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/csha512.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cspread.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cstat.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/ctrm.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cunif.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cwbscr.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/cwtd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/deccodes.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/declbld.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/dgstobj.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/dispmix.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/dldata.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/dlogin.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/dlogout.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/dmnf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drbggen.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drbgnew.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drbgrsd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drftapp.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drftcal.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drftchisq.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drfthomog.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drfthtml.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drftks.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drftpsi.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drp.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/drvkey.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/dstfit.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/dstn.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/dstntst.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/dtctloc.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/dualcont.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/duprows.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/ebrates.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/envdiff.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/evlrr.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/evstudy.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/expbands.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/expcnts.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/expconcidx.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/explerr.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/exprspplr.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/exptrnd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/falsfam.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/fdl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/fetchvrf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/figures |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/filedgst.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/fipskey.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/fipskg.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/fipsmu.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/fipssz.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/fnllim.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/fpeqv.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/freqtbl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/frmaud.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/fromjs.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/fylbl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/genexpo.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/ghann.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/grdbin.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/grdlvls.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/grdrcd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/healchg.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/hilltlidx.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/holbal.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/hotpers.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/hqccmpkey.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/hqcdecap.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/hqcencap.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/hqckg.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/hqcsz.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/hurwzeta.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/indgap.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/indiex.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/indtabs.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/infsch.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/inlhist.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/instcli.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/jsgz.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/jsserdoc.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/justice-data.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/kemdecap.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/kemencap.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/kemkg.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/kemsz.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/keyeddgst.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/knoxtst.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/ldgrread.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/lifetbl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/limfrom.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/llmask.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/llmcfg.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/llmchat.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/llmmdls.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/llmprvd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/llmrte.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/llmstat.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/loadprov.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/loounit.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/ltrlrng.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mahaoutl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mcartst.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mhcont.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/missgrid.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/misspat.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/missruns.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/misssmry.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mkmnf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mksyncol.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mksyncsv.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mnfcanon.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mnfdiff.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mnfrcmp.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mnfrecseed.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/morani.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mortdisp.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mrk.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/mtchdid.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/onl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/optsqr.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/oqskg.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/orchk.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/ordcmp.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/perdays.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/perminf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/pgsig.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/piperate.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plmfld.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plndid.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plndml.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plnpois.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plnpwr.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plot-methods.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plot.rmbl_dstfit.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plotevgrid.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plothwk.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plotlrnz.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plotmore.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plotseries.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/plrcf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/polbrdarea.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/polbrdn.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/polex.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/pqcbknd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/pqckg.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/printmeth.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/profcols.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/profshr.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/prrgdecl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/prsbands.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/pubbnd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/qltyrcd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/raplok.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/ratechg.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rategap.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rcdmnf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/recrd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/relbl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rgncov.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rgnmapalt.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rgnmapcmp.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rgnmapintg.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rgnmappts.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rlblfrns.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rmbl-aliases.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rmbl-compat.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rmblapp.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rmbldemo.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rndbytes.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rptanl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rptmd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rslvarc.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rslvckan.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rslvckns.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rslvsoc.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rsv.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rtcalc.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rul.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rulelib.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/rvkfetch.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/scanadj.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/scests.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/schemapath.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/schval.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/sctidy.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/sevidx.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/sha256file.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/shrs.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/signpubkey.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/siudate.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/siufetch.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/siufprs.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/siuprs.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/siusch.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/siuso.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/siutxt.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/sprd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/srchfig.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/staysmry.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/stdinc.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/stdprev.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/stepchg.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/stgatt.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/stkflow.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/stpdnpv.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/svcs.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/svycmp.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/svydes.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/svyest.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/swtdid.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/synctl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/syndid.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/toascii.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/tojs.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/topcors.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/trccmpl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/trchlthgap.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/trcind.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/trcprog.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/trndtst.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/tse.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/tsvrf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/usecpstmpl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/valrules.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/valsch.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/vrfcps.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/vrfmrg.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/vrfpol.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/vrfrcd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/vrfsha256.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/wbrtry.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/wbsave.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/wbsnpnat.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/wbsnpurl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/wcb.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/welprof.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/wrmnfjs.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/wrrcdmnf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/wrsmrytxt.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/wrtxtfb.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/xfrvrf.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/xmssadv.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/xmssidxseen.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/yoy.Rd | 168 rmoriebricklayer-1.0.0/rmoriebricklayer/man/yoybnd.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/yoydelim.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/yoylbl.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/yoypals.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/yoypv.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/yoyren.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/yoysmry.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/man/yoywr.Rd |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/Makevars.in |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/Makevars.win | 34 rmoriebricklayer-1.0.0/rmoriebricklayer/src/init.c | 193 rmoriebricklayer-1.0.0/rmoriebricklayer/src/morie_core.h | 907 ++ rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_ascii.h |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_asn1.cpp | 219 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_barrier.cpp |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_bignum.h |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_core.cpp | 398 + rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_csv.c |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_ct.h |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_digest.cpp | 234 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_drbg.cpp |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_drbg_core.h |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_ecdsa.cpp | 98 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_entry.h |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_fetch.cpp | 1737 +++++ rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_flock.c |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_gunzip.c |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_hqc.cpp |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_hqc_core.h |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_json.cpp |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_kdf.cpp | 197 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_keccak.cpp | 87 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_keccak.h |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_mask_rng.h |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_masked.h |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_mgf1.cpp | 43 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_mldsa_body.h | 424 + rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_mldsa_core.h | 29 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_mldsa_ntt.cpp | 315 - rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_mlkem.cpp | 105 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_mlkem_arith.h |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_mlkem_body.h | 400 + rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_mlkem_core.h | 160 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_pqc.cpp | 127 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_prehash.h | 128 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_progress.c |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_series.cpp | 220 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_siu.cpp | 99 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_sketch.cpp | 79 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_slhdsa.cpp | 158 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_slhdsa_body.h | 129 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_slhdsa_core.h | 14 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_stats.cpp | 157 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_strtod.cpp | 109 rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_survey.c |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/rmbl_unity.cpp |only rmoriebricklayer-1.0.0/rmoriebricklayer/src/siu_parse.cpp | 1204 +++ rmoriebricklayer-1.0.0/rmoriebricklayer/src/siu_parse.h | 43 rmoriebricklayer-1.0.0/rmoriebricklayer/src/siu_resolve.cpp | 299 rmoriebricklayer-1.0.0/rmoriebricklayer/src/siu_resolve.h | 7 rmoriebricklayer-1.0.0/rmoriebricklayer/src/siu_schema.h | 13 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat.R | 31 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/drbg-cavp-vectors.txt |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/fixtures |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/helper-capsule.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/helper-llm-routes.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/helper-seams.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/helper-signals.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/helper-signin.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/helper-vectors.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/helper-wallclock.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/helper-x509.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/helper-xmss.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/hqc-kat-digests.txt |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/hqc4-kat-digests.txt |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-agent-bundle.R | 46 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-air-dispersion.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-analyse-table.R | 164 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-archive-capture.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-areal.R | 125 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-attest.R | 344 - rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-audit-30bed8e.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-audit-sec-1_0_0.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-branches.R | 227 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-bundle-fallbacks.R | 8 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-bundle.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-byte-parity.R | 177 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-capsule-check.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-capsule-cli.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-capsule-template.R | 10 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-capsule.R | 111 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-categorical-guard.R | 260 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-census.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-cli-ask-aliases.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-compat-0-5.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-compat-names.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-compute-footprint.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-core-overflow.R | 66 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-core-stats.R | 419 - rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-core.R | 42 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-coverage-0_5_7.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-coverage-0_5_9-c.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-coverage-0_5_9.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-coverage-1_0_0-audit.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-coverage-1_0_0-extra.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-coverage-1_0_0-gaps.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-coverage-1_0_0-misc.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-coverage-1_0_0-native.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-coverage-1_0_0-policy.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-coverage-1_0_0.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-cran-stress-0_5_14.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-cran-stress-b617a3f.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-crypto-extra.R | 169 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-custody.R | 180 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-dashboard-search.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-dashboard.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-data-hub.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-data-key.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-data-loader.R | 275 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-digest-extra.R | 289 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-docs-bugs-0513.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-download-branches.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-download-progress.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-drbg.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-drift-plots.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-drift.R | 176 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-dstfit.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-dtoa17.R | 77 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-eda.R | 290 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-edge-cases.R | 205 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-explain-error.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-fetch-native.R | 90 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-fetch-verified.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-final-audit-1_0_0.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-fips-prehash.R | 189 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-fips-sig.R | 185 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-fips202.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-g5-2a-messages.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-hawkes-fit.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-hawkes-more.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-helper-paths.R | 46 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-helpers.R | 38 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-hotspot.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-hqc-compressed.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-hqc-round4.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-hqc.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-indigenous-frameworks.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-indigenous-mental-health.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-indigenous-review.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-indigenous.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-input-contracts.R | 183 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-json-branches.R | 153 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-json-edges.R | 256 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-json-native.R | 24 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-json-parity.R | 131 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-justice.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-kem.R | 112 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-last-gaps.R | 48 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-ledger.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-leftovers-0513.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-linkingto.R | 412 + rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-llm-byok.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-llm-config.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-llm-native.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-llm-routes.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-local-seed.R | 9 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-manifest.R | 51 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-mcar.R | 41 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-nameconstraints.R | 216 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-oqs.R | 134 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-panel-causal.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-parity-extra.R | 174 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-patch-0_5_12-byok.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-patch-cover-0513.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-patch-pr56.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-plot-fit-1_0_0.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-plots-more.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-plots.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-policy-evaluation.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-policy-plots.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-pollution.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-print-methods.R | 49 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-profile-extra.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-progress-anim.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-progress-console.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-progress-everywhere.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-rate.R | 171 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-region_map.R | 213 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-report.R | 163 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-repro.R | 307 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-retest-b617a3f.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-review-1_0_0-native.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-review-1_0_0-siu.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-review-1_0_0-wipe.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-review-boundary.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-review-coverage.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-review-stats.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-review2.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-review3.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-review4.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-review5.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-rmbldemo.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-round5.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-round8.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-rule-lib.R | 184 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-schema-chain.R | 214 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-search-figs.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-search.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-services.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-sha256-native.R | 65 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-shax.R | 14 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-sign-pqc.R | 284 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-signin-profile.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-siu-detectors.R | 44 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-siu-layouts.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-siu-parse.R | 103 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-siu-subject-service.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-sketch.R | 148 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-spread.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-src-hygiene.R | 201 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-srr.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-stress-02a38be-review.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-stress-0_5_10.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-stress-0_5_12-review.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-stress-0_5_12.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-stress-29a55d8-review.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-stress-52a8883-review.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-stress-7703a04-review.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-stress-e57fed5-review.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-stress-fcdce03-review.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-survey.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-synthetic.R | 47 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-tables.R | 385 - rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-transport-live.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-trc.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-trend-scale.R | 31 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-ubsan-paths.R | 10 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-url-fallback.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-vectors-0_5_10.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-wayback-save.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-wycheproof.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-x509-branches.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-x509.R | 73 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-xmss-cli.R |only rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-xmss-kat.R | 77 rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/test-yoy.R | 385 - rmoriebricklayer-1.0.0/rmoriebricklayer/tests/testthat/x509-fixtures.txt | 57 rmoriebricklayer-1.0.0/rmoriebricklayer/vignettes/applied-analyses.Rmd |only rmoriebricklayer-1.0.0/rmoriebricklayer/vignettes/capsules-and-provenance.Rmd |only rmoriebricklayer-1.0.0/rmoriebricklayer/vignettes/describing-data-and-tables.Rmd |only rmoriebricklayer-1.0.0/rmoriebricklayer/vignettes/integrity-and-cryptography.Rmd |only rmoriebricklayer-1.0.0/rmoriebricklayer/vignettes/parts |only rmoriebricklayer-1.0.0/rmoriebricklayer/vignettes/statistical-methods.Rmd |only 964 files changed, 38543 insertions(+), 14031 deletions(-)
More information about rmoriebricklayer at CRAN
Permanent link
Title: Fuzzy and Non-Fuzzy Classifiers
Description: It provides classifiers which can be used for discrete variables and for continuous variables based on the Naive Bayes and Fuzzy Naive Bayes hypothesis. Those methods were developed by researchers belong to the 'Laboratory of Technologies for Virtual Teaching and Statistics (LabTEVE)' and 'Laboratory of Applied Statistics to Image Processing and Geoprocessing (LEAPIG)' at 'Federal University of Paraiba, Brazil'. They considered some statistical distributions and their papers were published in the scientific literature, as for instance, the Gaussian classifier using fuzzy parameters, proposed by 'Moraes, Ferreira and Machado' (2021) <doi:10.1007/s40815-020-00936-4>. The classifiers are implemented as 'R6' classes and are also available as 'parsnip' models, so they can be used within the 'tidymodels' framework.
Author: Jodavid Ferreira [aut, cre] ,
Ronei Moraes [ctb] ,
Liliane Machado [ctb] ,
Arthur Ricardo [ctb],
Isaac Araujo [ctb]
Maintainer: Jodavid Ferreira <jodavid@protonmail.com>
Diff between FuzzyClass versions 0.2.0 dated 2026-10-09 and 0.3.0 dated 2026-10-21
FuzzyClass-0.2.0/FuzzyClass/tests/test_type.R |only FuzzyClass-0.3.0/FuzzyClass/DESCRIPTION | 18 - FuzzyClass-0.3.0/FuzzyClass/MD5 | 123 ++++--- FuzzyClass-0.3.0/FuzzyClass/NAMESPACE | 81 +--- FuzzyClass-0.3.0/FuzzyClass/NEWS.md | 21 + FuzzyClass-0.3.0/FuzzyClass/R/DWFuzzyGammaNaiveBayes.R | 79 +++- FuzzyClass-0.3.0/FuzzyClass/R/DoubleWeightedFuzzyHiperGeometricNaiveBayes.R | 82 +++- FuzzyClass-0.3.0/FuzzyClass/R/ExpNBFuzzyParam.R | 74 +++- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyBayesRule.R | 76 +++- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyBetaNaiveBayes.R | 76 +++- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyBinomialNaiveBayes.R | 77 +++- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyClass-package.R | 1 FuzzyClass-0.3.0/FuzzyClass/R/FuzzyClassifier.R |only FuzzyClass-0.3.0/FuzzyClass/R/FuzzyExponentialNaiveBayes.R | 76 +++- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyGammaNaiveBayes.R | 76 +++- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyGaussianNaiveBayes.R | 78 +++- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyGeoNaiveBayes.R | 77 +++- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyHiperGeometricNaiveBayes.R | 79 +++- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyNaiveBayes.R | 97 +++-- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyPoissonNaiveBayes.R | 77 +++- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyTrapeNaiveBayes.R | 76 +++- FuzzyClass-0.3.0/FuzzyClass/R/FuzzyTriangNaiveBayes.R | 76 +++- FuzzyClass-0.3.0/FuzzyClass/R/GauNBFuzzyParam.R | 74 +++- FuzzyClass-0.3.0/FuzzyClass/R/PoiNBFuzzyParam.R | 73 +++- FuzzyClass-0.3.0/FuzzyClass/R/tidymodels.R |only FuzzyClass-0.3.0/FuzzyClass/R/zzz.R |only FuzzyClass-0.3.0/FuzzyClass/README.md | 166 ++++++++-- FuzzyClass-0.3.0/FuzzyClass/build/partial.rdb |binary FuzzyClass-0.3.0/FuzzyClass/build/vignette.rds |binary FuzzyClass-0.3.0/FuzzyClass/inst/doc/FuzzyClass.html | 10 FuzzyClass-0.3.0/FuzzyClass/inst/doc/index.html | 10 FuzzyClass-0.3.0/FuzzyClass/inst/doc/r6-tidymodels.R |only FuzzyClass-0.3.0/FuzzyClass/inst/doc/r6-tidymodels.Rmd |only FuzzyClass-0.3.0/FuzzyClass/inst/doc/r6-tidymodels.html |only FuzzyClass-0.3.0/FuzzyClass/man/DWFuzzyGammaNaiveBayes.Rd | 17 - FuzzyClass-0.3.0/FuzzyClass/man/DWFuzzyGammaNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/DWFuzzyHipergeometricNaiveBayes.Rd | 10 FuzzyClass-0.3.0/FuzzyClass/man/DWFuzzyHipergeometricNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/ExpNBFuzzyParam.Rd | 10 FuzzyClass-0.3.0/FuzzyClass/man/ExpNBFuzzyParamModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyBayesRule.Rd | 9 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyBayesRuleModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyBetaNaiveBayes.Rd | 15 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyBetaNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyBinomialNaiveBayes.Rd | 15 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyBinomialNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyClass-package.Rd | 2 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyClassifier.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyExponentialNaiveBayes.Rd | 15 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyExponentialNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyGammaNaiveBayes.Rd | 15 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyGammaNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyGaussianNaiveBayes.Rd | 15 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyGaussianNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyGeoNaiveBayes.Rd | 9 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyGeoNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyHipergeometricNaiveBayes.Rd | 15 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyHipergeometricNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyNaiveBayes.Rd | 16 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyPoissonNaiveBayes.Rd | 15 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyPoissonNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyTrapezoidalNaiveBayes.Rd | 15 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyTrapezoidalNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/FuzzyTriangularNaiveBayes.Rd | 15 FuzzyClass-0.3.0/FuzzyClass/man/FuzzyTriangularNaiveBayesModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/GauNBFuzzyParam.Rd | 10 FuzzyClass-0.3.0/FuzzyClass/man/GauNBFuzzyParamModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/PoiNBFuzzyParam.Rd | 10 FuzzyClass-0.3.0/FuzzyClass/man/PoiNBFuzzyParamModel.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/fuzzy_membership.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/fuzzy_naive_bayes.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/fuzzy_verbose.Rd |only FuzzyClass-0.3.0/FuzzyClass/man/predict.FuzzyClassifier.Rd |only FuzzyClass-0.3.0/FuzzyClass/tests/testthat |only FuzzyClass-0.3.0/FuzzyClass/tests/testthat.R |only FuzzyClass-0.3.0/FuzzyClass/vignettes/r6-tidymodels.Rmd |only 77 files changed, 1373 insertions(+), 608 deletions(-)
Title: Non-Linear Transformation Models
Description: Fits a non-linear transformation model ('nltm') for
analyzing survival data, see Tsodikov (2003) <doi:10.1111/1467-9868.00414>. The
class of 'nltm' includes the following currently supported
models: Cox proportional hazard, proportional hazard cure,
proportional odds, proportional hazard - proportional hazard
cure, proportional hazard - proportional odds cure, Gamma
frailty, and proportional hazard - proportional odds.
Author: Gilda Garibotti [aut],
Alexander Tsodikov [aut],
Mark Clements [aut, cre]
Maintainer: Mark Clements <mark.clements@ki.se>
Diff between nltm versions 1.4.6 dated 2025-07-23 and 1.4.7 dated 2026-10-21
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Title: Tools for Network Data Workflows
Description: Builds, validates, analyzes, and visualizes network data from
dyadic, event, matrix, 'igraph', and 'network' inputs. Supports
cross-sectional, longitudinal, bipartite, and multi-layer networks, with
conversion helpers for common modeling workflows and plotting utilities
for exploratory analysis. Network methods are described in Wasserman and
Faust (1994, ISBN:9780521387071), Cranmer et al. (2021)
<doi:10.1017/9781316662915>, and Minhas et al. (2022)
<doi:10.1017/psrm.2021.56>.
Author: Ha Eun Choi [ctb],
Cassy Dorff [aut],
Colin Henry [ctb],
Shahryar Minhas [aut, cre],
Tosin Salau [ctb]
Maintainer: Shahryar Minhas <minhassh@msu.edu>
Diff between netify versions 1.5.3 dated 2026-06-30 and 1.5.4 dated 2026-10-21
DESCRIPTION | 6 MD5 | 165 ++++++------- NEWS.md | 123 +++++++++ R/add_dyad_vars.R | 5 R/add_node_vars.R | 2 R/animate_netify.R | 4 R/attribute_report.R | 2 R/binarize.R | 12 R/bootstrap_netlet.R | 54 +++- R/compare_networks.R | 37 ++- R/compare_networks_helpers.R | 90 ++++++- R/dyad_correlation.R | 35 ++ R/ego_netify.R | 12 R/ego_netify_helpers.R | 89 +++++++ R/from_lame_fit.R | 103 ++++++-- R/get_actor_time_info.R | 57 ++++ R/get_adjacency.R | 5 R/get_adjacency_array.R | 60 ++++ R/get_adjacency_list.R | 33 +- R/get_edge_layout.R | 4 R/get_node_layout.R | 31 ++ R/homophily.R | 31 ++ R/merge_layout_attribs.R | 345 ++++++++++++++++++---------- R/misc.R | 79 ++++++ R/mixing_matrix.R | 34 ++ R/mutate_weights.R | 251 ++++++++++++-------- R/net_plot_data.R | 15 + R/netify.R | 59 +++- R/netify_constructors.R | 16 - R/netify_get_input_checks.R | 72 +++++ R/netify_workflows.R | 8 R/peek.R | 8 R/plot.netify.R | 136 ++++++++--- R/plot_homophily.R | 20 - R/subset_netify.R | 148 ++++++++++-- R/summary_actor.R | 29 ++ R/summary_helpers.R | 16 - R/to_amen.R | 41 +-- R/to_lame.R | 111 +++------ R/to_netify.R | 37 ++- R/to_statnet.R | 4 R/validate_plot_params.R | 6 README.md | 4 inst/doc/internals.html | 4 inst/doc/pipeline_netify_ergm.html | 4 inst/doc/quickstart_inference.html | 24 + inst/doc/resources.html | 4 man/animate_netify.Rd | 4 man/binarize.Rd | 8 man/bootstrap_netlet.Rd | 13 - man/compare_networks.Rd | 26 +- man/ego_netify.Rd | 3 man/from_lame_fit.Rd | 9 man/get_node_layout.Rd | 4 man/homophily.Rd | 6 man/mixing_matrix.Rd | 9 man/mutate_weights.Rd | 7 man/netify.Rd | 16 - man/netify_to_lame.Rd | 33 +- man/netify_workflows.Rd | 8 man/new_netify.Rd | 3 man/peek.Rd | 8 man/plot.netify.Rd | 22 + man/subset.netify.Rd | 15 + man/summary_actor.Rd | 3 tests/testthat/test_add_dyad_vars.R | 32 ++ tests/testthat/test_add_node_vars.R | 29 ++ tests/testthat/test_adjacency_list.R | 28 ++ tests/testthat/test_bootstrap_netlet.R |only tests/testthat/test_compare_networks.R | 116 +++++++++ tests/testthat/test_constructor.R | 30 ++ tests/testthat/test_ego_net.R | 104 ++++++++ tests/testthat/test_exploratory_analysis.R | 51 +++- tests/testthat/test_from_lame_fit.R | 185 ++++++++++++--- tests/testthat/test_homophily_mixing.R |only tests/testthat/test_mutate_weights.R | 157 ++++++++++++ tests/testthat/test_plot_netify.R |only tests/testthat/test_plot_param_validation.R | 12 tests/testthat/test_regression_cases.R | 139 +++++++++++ tests/testthat/test_subset_netify.R | 285 +++++++++++++++++++++++ tests/testthat/test_summary.R | 8 tests/testthat/test_summary_actor.R | 41 +++ tests/testthat/test_to_amen.R | 60 ++++ tests/testthat/test_to_netify.R | 68 +++++ tests/testthat/test_to_statnet.R | 47 +++ 85 files changed, 3308 insertions(+), 716 deletions(-)
Title: Power Analyses using Monte Carlo Simulations
Description: Provides a general purpose simulation-based power analysis
API for routine and customized simulation experimental designs.
The package focuses exclusively on Monte Carlo simulation experiment variants of
(expected) prospective power analyses,
criterion analyses, compromise analyses, sensitivity analyses, and
a priori/post-hoc analyses. The default simulation experiment functions defined within the package
provide stochastic variants of the power analysis subroutines in
G*Power 3.1 (Faul, Erdfelder, Buchner, and Lang, 2009) <doi:10.3758/brm.41.4.1149>,
along with various other parametric and non-parametric power analysis
applications (e.g., mediation analyses) and support for Bayesian power analysis
by way of Bayes factors or posterior probability evaluations.
Additional functions for building
empirical power curves, reanalyzing simulation information, and
for increasing the precision of the resulting power
estimates are also included, each of which utilize similar API structures. [...truncated...]
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between Spower versions 0.7 dated 2026-10-15 and 0.7.1 dated 2026-10-21
DESCRIPTION | 6 MD5 | 68 +++--- R/p_2r.R | 12 - R/p_anova.test.R | 1 R/p_ks.test.R | 10 R/p_mcnemar.test.R | 1 R/p_mediation.R | 1 R/p_prop.test.R | 13 - R/p_r.R | 11 - R/p_r.cat.R | 17 + R/p_scale.R | 11 - R/p_t.test.R | 13 - R/p_var.test.R | 9 R/p_wilcox.test.R | 11 - inst/doc/SpowerIntro.html | 8 inst/doc/SpowerIntro_logicals.html | 10 inst/doc/Spower_TypeSM.html | 12 - inst/doc/gpower_examples.R | 50 ++-- inst/doc/gpower_examples.Rmd | 66 +++--- inst/doc/gpower_examples.html | 400 ++++++++++++++++++------------------- inst/gpower.rds |binary inst/intro.rds |binary inst/intro2.rds |binary inst/intro3.rds |binary man/p_2r.Rd | 9 man/p_ks.test.Rd | 9 man/p_prop.test.Rd | 13 - man/p_r.Rd | 9 man/p_r.cat.Rd | 5 man/p_scale.Rd | 9 man/p_t.test.Rd | 13 - man/p_var.test.Rd | 9 man/p_wilcox.test.Rd | 9 tests/testthat/test-Spower.R | 4 vignettes/gpower_examples.Rmd | 66 +++--- 35 files changed, 413 insertions(+), 472 deletions(-)
Title: Symbolic Differentiation
Description: R-based solution for symbolic differentiation. It admits
user-defined function as well as function substitution
in arguments of functions to be differentiated. Some symbolic
simplification is part of the work.
Author: Andrew Clausen [aut],
Serguei Sokol [aut, cre] ,
Andreas Rappold [ctb]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between Deriv versions 4.3.5 dated 2026-09-03 and 4.3.6 dated 2026-10-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 8 ++++++++ R/Simplify.R | 7 ++++--- inst/CITATION | 4 ++-- src/derive_simplif.cpp | 5 ++++- 6 files changed, 27 insertions(+), 15 deletions(-)
Title: Genome-Wide Nucleic Acid Melting Temperature Profiling and
Multi-Omics Integration
Description: Accurate calculation of nucleic acid melting temperature (Tm) is fundamental to many molecular biology applications, and this software scales Tm analysis from individual sequences to genome-wide thermodynamic profiling. This package extends Tm analysis from simple sequence level computation to comprehensive genome-wide thermodynamic profiling. It takes four input sources: sequence strings, a FASTA file, an installed 'BSgenome' package named by string, or a 'GRanges' carrying sequences. A 'regions' argument selects what to cover and 'window' and 'slide' set the resolution at which it is tiled. The implementation provides three Tm calculation methods: the Wallace rule (Thein & Wallace, 1986), empirical GC-content formulas (Marmur, 1962; Schildkraut, 1965; Wetmur, 1991; Untergasser, 2012; von Ahsen, 2001), and nearest-neighbor thermodynamics (Breslauer, 1986; Sugimoto, 1996; Allawi, 1997, 1998; SantaLucia, 2004; Freier, 1986; Xia, 1998; Chen, 2012; Bommarito, 2000; Turner, 2010; Sugim [...truncated...]
Author: Junhui Li [cre, aut] ,
Lihua Julie Zhu [aut]
Maintainer: Junhui Li <ljh.biostat@gmail.com>
Diff between TmCalculator versions 1.1.2 dated 2026-10-05 and 1.1.3 dated 2026-10-21
DESCRIPTION | 10 +- MD5 | 62 ++++++------- NEWS.md | 67 ++++++++++++++ R/sysdata.rda |binary R/thermodynamic_nn_params.R | 20 ++-- R/tm_calculate.R | 10 +- R/tm_nn.R | 48 ++++++++-- R/zzz.R | 12 +- README.md | 20 +++- build/partial.rdb |only data/thermodynamic_nn_params.RData |binary inst/CITATION |only inst/doc/genome_wide_tm_ecoli.R | 18 +++ inst/doc/genome_wide_tm_ecoli.Rmd | 20 +++- inst/doc/genome_wide_tm_ecoli.html | 16 +-- inst/doc/hg38_performance_parallel.html | 12 +- inst/doc/window_size_sensitivity.R | 13 ++ inst/doc/window_size_sensitivity.Rmd | 14 ++- inst/doc/window_size_sensitivity.html | 12 +- inst/extdata/tm_nn_parameter_sources.tsv | 142 +++++++++++++++---------------- inst/extdata/tm_nn_reference_audit.md | 6 - inst/scripts/make_figure2.R | 10 +- inst/scripts/make_figure3.R | 13 ++ inst/scripts/plot_crosstool.R | 14 ++- man/TmCalculator-package.Rd | 2 man/thermodynamic_nn_params.Rd | 4 man/tm_calculate.Rd | 10 +- man/tm_nn.Rd | 12 +- tests/testthat/test_nn_rc_completion.R | 2 tests/testthat/test_regressions_1_1_2.R | 82 +++++++++++++++-- tests/testthat/test_tm_nn_rcpp.R | 8 - vignettes/genome_wide_tm_ecoli.Rmd | 20 +++- vignettes/window_size_sensitivity.Rmd | 14 ++- 33 files changed, 486 insertions(+), 207 deletions(-)
Title: Bayesian Probit Choice Modeling
Description: Fits Bayesian probit models for binary, multinomial, ordered, and ranked
choices in cross-sectional and panel data. Correlated or uncorrelated normal
and log-normal random coefficients, finite mixtures, sparse finite
mixtures, and Dirichlet process mixtures describe preference
heterogeneity. Multiple Gibbs chains produce posterior draws for
diagnostics and choice prediction. Choice data can be
supplied as a data frame or simulated from the requested specification.
For an overarching treatment of the methodology, see Oelschlaeger (2026)
<https://pub.uni-bielefeld.de/record/3014719>. The latent-class model is
described in Oelschlaeger and Bauer (2021)
<https://trid.trb.org/view/1759753>.
Author: Lennart Oelschlaeger [aut, cre] ,
Dietmar Bauer [aut]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between RprobitB versions 2.0.0 dated 2026-09-20 and 2.0.1 dated 2026-10-21
DESCRIPTION | 24 - MD5 | 104 ++--- NEWS.md | 20 + R/RcppExports.R | 13 R/RprobitB-package.R | 16 R/evaluation.R | 309 ++++++++++++++-- R/fit.R | 59 ++- R/helpers.R | 35 + R/interpret.R | 2 R/model.R | 42 +- R/posterior.R | 194 +++++++++- R/prediction.R | 2 README.md | 57 +-- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 63 ++- inst/doc/v01_get_started.Rmd | 57 +-- inst/doc/v01_get_started.html | 143 ++++--- inst/doc/v02_model_variants.R | 8 inst/doc/v02_model_variants.Rmd | 87 ++-- inst/doc/v02_model_variants.html | 241 ++++++------ inst/doc/v03_heterogeneity.R | 25 + inst/doc/v03_heterogeneity.Rmd | 110 ++++- inst/doc/v03_heterogeneity.html | 688 ++++++++++++++++++++----------------- inst/doc/v04_prediction.R | 2 inst/doc/v04_prediction.Rmd | 64 +-- inst/doc/v04_prediction.html | 237 ++++++------ inst/doc/v05_model_evaluation.R | 4 inst/doc/v05_model_evaluation.Rmd | 30 - inst/doc/v05_model_evaluation.html | 85 ++-- man/RprobitB-package.Rd | 22 - man/bayes_factor.Rd | 19 - man/class_updates.Rd | 2 man/coefficient_updates.Rd | 7 man/figures/README-plot-1.png |binary man/fit.Rd | 43 +- man/interpret.Rd | 2 man/latent_class_diagnostics.Rd | 11 man/loo.RprobitB_fit.Rd | 2 man/plot.RprobitB_fit.Rd | 25 + man/predict.RprobitB_fit.Rd | 2 man/summary.RprobitB_fit.Rd | 20 - man/update.RprobitB_fit.Rd | 6 man/utility_updates.Rd | 4 src/gibbs_sampler.cpp | 79 ++-- tests/testthat/test-evaluation.R | 40 +- tests/testthat/test-fit.R | 12 tests/testthat/test-posterior.R | 3 vignettes/v01_get_started.Rmd | 57 +-- vignettes/v02_model_variants.Rmd | 87 ++-- vignettes/v03_heterogeneity.Rmd | 110 ++++- vignettes/v04_prediction.Rmd | 64 +-- vignettes/v05_model_evaluation.Rmd | 30 - 53 files changed, 2084 insertions(+), 1284 deletions(-)
Title: Quantum Walk-Based Data Analysis and Prediction
Description: The modeling and prediction of graph-associated time series(GATS) based on continuous time quantum walk. This software is mainly used for feature extraction, modeling, prediction and result evaluation of GATS, including continuous time quantum walk simulation, feature selection, regression analysis, time series prediction, and series fit calculation. A paper is attached to the package for reference.
Author: Binghuang Pan [aut, cre],
Zhaoyuan Yu [aut],
Xu Hu [ctb],
Yuhao Teng [ctb]
Maintainer: Binghuang Pan <bright1up@163.com>
This is a re-admission after prior archival of version 1.1.20 dated 2024-10-10
Diff between QWDAP versions 1.1.20 dated 2024-10-10 and 1.1.22 dated 2026-10-21
DESCRIPTION | 12 ++--- MD5 | 11 ++--- NAMESPACE | 56 +++++++++++++------------- R/RcppExports.R | 22 +++++----- R/rrelieff.r | 106 +++++++++++++++++++++++++++++++++++++++++++++++--- README.md |only man/qwdap.rrelieff.Rd | 88 ++++++++++++++++++++++++----------------- 7 files changed, 202 insertions(+), 93 deletions(-)
More information about powerutilities at CRAN
Permanent link
Title: Projected Actor Locations for Spatial Interaction Modeling
Description: Implements the Projected Actor Locations (PALS) method for spatial
modeling of dyadic interactions between geographically mobile actors, as
described in Kim, Liu and Desmarais (2023) <doi:10.1017/psrm.2022.6>. PALS
applies exponential-smoothing weights to the spatiotemporal histories of a
focal actor and its interaction partners ("alters") to project the location
of future interactions. The package provides projection, maximum-similarity
parameter estimation by minimizing great-circle (Haversine) prediction error,
nonparametric bootstrap with multiple-imputation (Rubin's Rules) pooling,
dyadic distance covariate construction, visualization, and a simulated
example dataset of subnational conflict.
Author: Bruce A. Desmarais [aut, cre],
Sangyeon Kim [aut],
Howard Liu [aut]
Maintainer: Bruce A. Desmarais <bruce.desmarais@gmail.com>
Diff between palsr versions 0.1.0 dated 2026-07-01 and 0.1.1 dated 2026-10-21
DESCRIPTION | 6 +++--- MD5 | 23 +++++++++++++---------- NAMESPACE | 3 +++ NEWS.md | 18 ++++++++++++++++++ R/bootstrap.R | 23 +++++++++++++++++++++-- R/palsr-package.R | 2 +- R/rolling_origin.R |only README.md | 31 ++++++++++++++++++++++++++----- build/partial.rdb |binary build/vignette.rds |binary man/bootstrap_pals.Rd | 9 +++++++++ man/rolling_origin_pals.Rd |only tests/testthat/test-bootstrap.R | 18 ++++++++++++++++++ tests/testthat/test-rolling-origin.R |only 14 files changed, 112 insertions(+), 21 deletions(-)
Title: 'Native Status Resolver'
Description: Provides access to the 'Native Status Resolver' (NSR) <https://github.com/ojalaquellueva/nsr> API through R. The user supplies plant taxonomic names and political divisions and the package returns information about their likely native status (e.g., native, non-native,endemic), along with information on how those decisions were made.
Author: Brian Maitner [aut, cre] ,
Brad Boyle [aut]
Maintainer: Brian Maitner <bmaitner@gmail.com>
This is a re-admission after prior archival of version 0.1.0 dated 2024-10-16
Diff between NSR versions 0.1.0 dated 2024-10-16 and 0.1.1 dated 2026-10-21
DESCRIPTION | 22 ++-- MD5 | 102 +++++++++++++-------- NAMESPACE | 5 + NEWS | 45 +++++++++ R/NSR.R | 83 +++++++++++------ R/NSR_core.R | 4 R/NSR_from_coordinates.R |only R/NSR_local.R |only R/NSR_local_set.R |only R/NSR_metadata.R | 26 +++-- R/local_altdiv.R |only R/local_build.R |only R/local_cache.R |only R/local_globals.R |only R/local_higher.R |only R/local_import.R |only R/local_regions.R |only README.md | 9 + build/vignette.rds |binary inst/doc/NSR.R | 10 +- inst/doc/NSR.Rmd | 2 inst/doc/NSR.html | 72 +++----------- man/NSR.Rd | 3 man/NSR_data_dictionary.Rd | 54 +++++------ man/NSR_from_coordinates.Rd |only man/NSR_local.Rd |only man/NSR_local_build.Rd |only man/NSR_local_by_region.Rd |only man/NSR_local_remove.Rd |only man/NSR_local_status.Rd |only man/NSR_metadata.Rd | 2 man/NSR_simple.Rd | 84 ++++++++--------- man/figures |only man/nsr_batch_index.Rd |only man/nsr_core.Rd | 54 +++++------ tests/fixtures/nsr_checklist.yml | 89 ++++++------------ tests/fixtures/nsr_citations.yml | 21 +--- tests/fixtures/nsr_dd.yml | 21 +--- tests/fixtures/nsr_dd_status.yml | 21 +--- tests/fixtures/nsr_example.yml | 67 +++++-------- tests/fixtures/nsr_poldivs.yml | 89 ++++++------------ tests/fixtures/nsr_simple_example.yml | 25 +---- tests/fixtures/nsr_simple_example2.yml | 27 +---- tests/fixtures/nsr_sources.yml | 89 ++++++------------ tests/fixtures/nsr_version.yml | 21 +--- tests/testthat/setup-nsr.R | 14 +- tests/testthat/test-NSR.R | 2 tests/testthat/test-NSR_api_failure.R |only tests/testthat/test-NSR_batching.R |only tests/testthat/test-NSR_citations.R | 2 tests/testthat/test-NSR_data_dictionary.R | 4 tests/testthat/test-NSR_from_coordinates_failure.R |only tests/testthat/test-NSR_metadata.R | 5 + tests/testthat/test-NSR_political_divisions.R | 4 tests/testthat/test-NSR_simple.R | 4 tests/testthat/test-NSR_sources.R | 2 tests/testthat/test-NSR_version.R | 2 tests/testthat/test-local-altdiv.R |only tests/testthat/test-local-geography.R |only tests/testthat/test-local-higher.R |only tests/testthat/test-local-nsr-paths.R |only tests/testthat/test-local-nsr.R |only tests/testthat/test-local-tnrs.R |only vignettes/NSR.Rmd | 2 64 files changed, 530 insertions(+), 558 deletions(-)
Title: Camera Trap Data Management and Multi-Method Ecological Analysis
Description: Tools for the complete camera trap data workflow in wildlife
monitoring and ecological research. Reads and edits media metadata, filters
independent detections, and standardises records for analysis. Measures diel
activity and overlap (Ridout and Linkie (2009) <doi:10.1198/jabes.2009.08038>),
directed short-term association between species with an encounter-response
model (Hawkes (1971) <doi:10.1093/biomet/58.1.83>), seasonal shifts in
activity, spatial coverage of detections, and species diversity. Estimates
density or abundance of unmarked
populations with several methods, including the random encounter model,
camera trap distance sampling, time-to-event, space-to-event, instantaneous
sampling, and the random encounter and staying-time model (see
Rowcliffe et al. (2008) <doi:10.1111/j.1365-2664.2008.01473.x>,
Howe et al. (2017) <doi:10.1111/2041-210X.12790>,
Moeller et al. (2018) <doi:10.1002/ecs2.2331>, and
Nakashima et al. (2018) <doi:10.1111/1365-2 [...truncated...]
Author: Stanislas Mahussi Gandaho [aut, cre] ,
Pablo Palencia [ctb, rev] ,
R Consortium [fnd]
Maintainer: Stanislas Mahussi Gandaho <stangandaho@gmail.com>
Diff between ct versions 0.4.0 dated 2026-07-16 and 0.5.0 dated 2026-10-21
DESCRIPTION | 46 +- MD5 | 61 +-- NAMESPACE | 8 NEWS.md | 34 ++ R/CTDS.R | 92 +++-- R/REM.R | 2 R/camtrapdp.R | 4 R/ct_check_location.R | 2 R/ct_correct_datetime.R | 98 ++++- R/ct_ds_fast.R |only R/ct_fit_encounter_response.R |only R/ct_overlap_matrix.R | 152 ++++++++- R/ct_plot_camtrap_activity.R | 3 R/ct_plot_overlap.R | 111 ++++-- R/ct_solartime.R | 4 R/ct_spatial_coverage.R | 6 R/ct_survey_design.R | 4 R/data.R | 37 ++ R/utils.R | 6 README.md | 18 - data/lama.rda |only man/ct-package.Rd | 4 man/ct_correct_datetime.Rd | 198 +++++++---- man/ct_dp_version.Rd | 2 man/ct_fit_detmodel.Rd | 2 man/ct_fit_ds.Rd | 654 +++++++++++++++++++-------------------- man/ct_fit_encounter_response.Rd |only man/ct_overlap_matrix.Rd | 61 +++ man/ct_plot_camtrap_activity.Rd | 2 man/ct_plot_overlap.Rd | 31 + man/ct_solartime.Rd | 3 man/ct_spatial_coverage.Rd | 5 man/ct_survey_design.Rd | 2 man/lama.Rd |only 34 files changed, 1071 insertions(+), 581 deletions(-)
Title: Interactive Clustered Graph for French Scientific Preparatory
Classes
Description: To help French students from scientific preparatory classes for the Grandes Ecoles (CPGE) in their choice of field of study and career options, this package provides an interactive tool and data visualization of a graph clustered by different competitive exams and sectors of activity for French selective engineering schools and selective higher education institutions like Ecoles Normales Superieures (ENS) or specialized university programs (magisteres). Besides, there are two drop-down menus to select on the graph many fields or more than 200 engineering schools or ENS or magisteres. It gives the opportunity to expand, collapse clusters of selective exams interactively too. For more information, see the demonstration video: <https://valerierobert-maths.re/index.php/maths-en-cpge/>. The data was collected via the official French website: <https://www.scei-concours.fr/statistiques.html>.
Author: Valerie Robert [aut, cre]
Maintainer: Valerie Robert <valerie.robert.math@gmail.com>
Diff between cpge versions 1.0.2 dated 2026-08-21 and 1.0.3 dated 2026-10-21
DESCRIPTION | 8 MD5 | 16 - NEWS.md | 6 R/data_graph.R | 2 R/sysdata.rda |only inst/quarto/cpge_fr.html | 24 - inst/quarto/cpge_fr_files/libs/bootstrap/bootstrap-138a6193a3bd40baf1e627da441a4734.min.css |only inst/quarto/cpge_fr_files/libs/bootstrap/bootstrap-icons.css | 34 ++ inst/quarto/cpge_fr_files/libs/bootstrap/bootstrap-icons.woff |binary inst/quarto/cpge_fr_files/libs/quarto-html/quarto.js | 152 +++------- 10 files changed, 110 insertions(+), 132 deletions(-)
More information about convertxlsform at CRAN
Permanent link
Title: Name-Blind Variable-Role Detection by Data Signature
Description: Deterministic, name-blind detection of variable roles (group,
outcome, survival or duration time and event, coupled binary-continuous
pairs, calendar time index, paired and agreement measurements, repeated
measures and panels, scale and rating items, subject or entity identifier,
covariate) in tabular data from any domain -- clinical, financial, social,
experimental. Roles are assigned from each column's information-theoretic signature
-- Shannon entropy, normalized mutual information, and distributional shape
-- rather than from column names, so renaming columns to 'col_1', 'col_2',
... does not change the result ("Data inspice, non nomen"). An optional,
capped name-based hint and automatic header-row detection are also provided.
No large language models and no external data transmission. Extracted from
the 'MDStatR' biostatistics engine; see Boynukara (2026)
<doi:10.5281/zenodo.20707791>.
Author: Can Boynukara [aut, cre, cph]
Maintainer: Can Boynukara <canboynukara1@gmail.com>
Diff between rolescry versions 0.2.0 dated 2026-07-19 and 0.3.0 dated 2026-10-21
DESCRIPTION | 26 MD5 | 85 - NAMESPACE | 24 NEWS.md | 146 ++ R/anm.R | 118 +- R/classify.R | 195 +-- R/dependency.R | 360 +++--- R/detect.R | 1777 ++++++++++++++++++++-------------- R/detect_roles.R | 323 +++--- R/harmonize_roles.R |only R/header.R | 326 +++--- R/mdl.R | 351 ++++-- R/name_bonus.R | 130 +- R/nmi.R | 126 +- R/read_data.R | 236 ++-- R/rolescry-package.R | 40 R/signatures.R | 498 +++------ R/utils.R | 204 +-- R/var_info.R | 109 +- R/verify_roles.R |only README.md | 230 ++++ inst/CITATION | 40 inst/WORDLIST | 31 inst/doc/rolescry.R | 38 inst/doc/rolescry.Rmd | 112 ++ inst/doc/rolescry.html | 208 +++ man/detect_roles.Rd | 36 man/harmonize_roles.Rd |only man/rolescry-package.Rd | 8 man/rolescry_default_name_bonus.Rd | 7 man/verify_roles.Rd |only tests/spelling.R | 6 tests/testthat.R | 8 tests/testthat/helper-dgp.R | 98 - tests/testthat/test-baseline-equiv.R | 107 +- tests/testthat/test-classify.R | 24 tests/testthat/test-detect-roles.R | 54 - tests/testthat/test-harmonize-roles.R |only tests/testthat/test-header.R | 74 - tests/testthat/test-mdl-factor.R |only tests/testthat/test-name-blind.R | 102 - tests/testthat/test-nmi.R | 36 tests/testthat/test-read-data.R | 46 tests/testthat/test-turnusol.R | 104 - tests/testthat/test-v030.R |only tests/testthat/test-verify-helpers.R |only tests/testthat/test-verify-roles.R |only vignettes/rolescry.Rmd | 112 ++ 48 files changed, 3860 insertions(+), 2695 deletions(-)
Title: Fit Neutral Community Model to Microbiome or Ecological Data
Description: Provides tools for fitting the neutral community model (NCM) to
assess the role of stochastic processes in community assembly. The package
implements the framework of Sloan et al. (2006) <doi:10.1111/j.1462-2920.2005.00956.x>,
enabling users to evaluate neutral dynamics in ecological and microbial communities.
Author: Yuxuan He [aut, cre, cph]
Maintainer: Yuxuan He <heyuxuan0525@outlook.com>
Diff between ncmR versions 0.3.1 dated 2026-05-10 and 0.4.0 dated 2026-10-21
DESCRIPTION | 12 MD5 | 28 - NAMESPACE | 6 NEWS.md | 22 + R/fit_ncm.R | 83 +++- R/plot.R | 594 +++++++++++++++++++++++++-------- R/run_app.R | 59 +++ README.md | 161 ++++++--- inst/ncmShiny/global.R |only inst/ncmShiny/server.R | 708 +++++++++++++++++++++------------------ inst/ncmShiny/ui.R | 872 +++++++++++++------------------------------------ inst/ncmShiny/www |only man/fit_ncm.Rd | 23 + man/pie_plot.Rd |only man/run_app.Rd | 28 + man/scatter_plot.Rd | 81 ++-- 16 files changed, 1464 insertions(+), 1213 deletions(-)
Title: Mutation Testing
Description: Performs mutation testing for 'R' packages to assess the
effectiveness of a test suite. It mutates source files, runs package tests
against each mutant, and reports which mutants were killed, survived, or
timed out. Parallel execution is supported for larger code bases. The
optional 'imputesrcref' package, available from
<https://github.com/PRL-PRG/imputesrcref>, improves source locations when
installed.
Author: Pierre Donat-Bouillud [aut, cre, cph] ,
Assanali Amandykov [aut, cph]
Maintainer: Pierre Donat-Bouillud <pierre.donat.bouillud@fit.cvut.cz>
Diff between mutator versions 0.2.1 dated 2026-08-02 and 0.3.0 dated 2026-10-21
mutator-0.2.1/mutator/man/operators.Rd |only mutator-0.2.1/mutator/src/AndOperator.cpp |only mutator-0.2.1/mutator/src/AndOperator.h |only mutator-0.2.1/mutator/src/ArithmeticOperator.h |only mutator-0.2.1/mutator/src/ComparisonOperator.h |only mutator-0.2.1/mutator/src/DivideOperator.cpp |only mutator-0.2.1/mutator/src/DivideOperator.h |only mutator-0.2.1/mutator/src/EqualOperator.cpp |only mutator-0.2.1/mutator/src/EqualOperator.h |only mutator-0.2.1/mutator/src/LessThanOperator.cpp |only mutator-0.2.1/mutator/src/LessThanOperator.h |only mutator-0.2.1/mutator/src/LessThanOrEqualOperator.cpp |only mutator-0.2.1/mutator/src/LessThanOrEqualOperator.h |only mutator-0.2.1/mutator/src/LogicalAndOperator.cpp |only mutator-0.2.1/mutator/src/LogicalAndOperator.h |only mutator-0.2.1/mutator/src/LogicalOperator.h |only mutator-0.2.1/mutator/src/LogicalOrOperator.cpp |only mutator-0.2.1/mutator/src/LogicalOrOperator.h |only mutator-0.2.1/mutator/src/MinusOperator.cpp |only mutator-0.2.1/mutator/src/MinusOperator.h |only mutator-0.2.1/mutator/src/MoreThanOperator.cpp |only mutator-0.2.1/mutator/src/MoreThanOperator.h |only mutator-0.2.1/mutator/src/MoreThanOrEqualOperator.cpp |only mutator-0.2.1/mutator/src/MoreThanOrEqualOperator.h |only mutator-0.2.1/mutator/src/MultiplyOperator.cpp |only mutator-0.2.1/mutator/src/MultiplyOperator.h |only mutator-0.2.1/mutator/src/NotEqualOperator.cpp |only mutator-0.2.1/mutator/src/NotEqualOperator.h |only mutator-0.2.1/mutator/src/OrOperator.cpp |only mutator-0.2.1/mutator/src/OrOperator.h |only mutator-0.2.1/mutator/src/PlusOperator.cpp |only mutator-0.2.1/mutator/src/PlusOperator.h |only mutator-0.2.1/mutator/src/ReplacementOperator.h |only mutator-0.3.0/mutator/DESCRIPTION | 6 mutator-0.3.0/mutator/MD5 | 128 +- mutator-0.3.0/mutator/NAMESPACE | 1 mutator-0.3.0/mutator/NEWS.md | 66 + mutator-0.3.0/mutator/R/ignore-directives.R | 76 + mutator-0.3.0/mutator/R/mutant-metadata.R | 7 mutator-0.3.0/mutator/R/mutator.R | 132 ++ mutator-0.3.0/mutator/R/openai.R | 177 +++ mutator-0.3.0/mutator/R/operators.R |only mutator-0.3.0/mutator/R/package-generation.R | 10 mutator-0.3.0/mutator/R/package-results.R | 54 + mutator-0.3.0/mutator/R/trivial-equivalence.R |only mutator-0.3.0/mutator/README.md | 76 + mutator-0.3.0/mutator/inst/ci/mutation-score.R | 2 mutator-0.3.0/mutator/inst/doc/configuration.R | 4 mutator-0.3.0/mutator/inst/doc/configuration.Rmd | 82 + mutator-0.3.0/mutator/inst/doc/configuration.html | 140 ++- mutator-0.3.0/mutator/inst/doc/continuous-integration.Rmd | 57 + mutator-0.3.0/mutator/inst/doc/continuous-integration.html | 144 ++- mutator-0.3.0/mutator/inst/doc/mutating-testing-package.html | 59 - mutator-0.3.0/mutator/man/call_openai_api.Rd | 12 mutator-0.3.0/mutator/man/mutate_file.Rd | 24 mutator-0.3.0/mutator/man/mutate_package.Rd | 20 mutator-0.3.0/mutator/man/mutation_operators.Rd |only mutator-0.3.0/mutator/src/ASTHandler.cpp | 455 ++++++++-- mutator-0.3.0/mutator/src/ASTHandler.h | 13 mutator-0.3.0/mutator/src/DeleteOperator.h | 2 mutator-0.3.0/mutator/src/Mutator.cpp | 85 - mutator-0.3.0/mutator/src/Mutator.h | 16 mutator-0.3.0/mutator/src/NodeReplacementOperator.h | 12 mutator-0.3.0/mutator/src/OperatorPos.h | 7 mutator-0.3.0/mutator/src/SymbolSwapOperator.h |only mutator-0.3.0/mutator/src/init.c | 8 mutator-0.3.0/mutator/src/mutateR.cpp | 58 - mutator-0.3.0/mutator/src/test-mutateR.cpp | 4 mutator-0.3.0/mutator/src/test-mutator.cpp | 86 + mutator-0.3.0/mutator/tests/testthat/helper-mutator.R | 27 mutator-0.3.0/mutator/tests/testthat/test-ast-constant-operators.R | 7 mutator-0.3.0/mutator/tests/testthat/test-ci-workflow.R |only mutator-0.3.0/mutator/tests/testthat/test-exclusions-operators.R |only mutator-0.3.0/mutator/tests/testthat/test-exclusions.R | 80 - mutator-0.3.0/mutator/tests/testthat/test-generation-internals.R | 24 mutator-0.3.0/mutator/tests/testthat/test-line-deletion.R |only mutator-0.3.0/mutator/tests/testthat/test-mutant-dedup.R |only mutator-0.3.0/mutator/tests/testthat/test-mutate-file-new.R | 22 mutator-0.3.0/mutator/tests/testthat/test-openai-retry.R |only mutator-0.3.0/mutator/tests/testthat/test-openai-truncation.R |only mutator-0.3.0/mutator/tests/testthat/test-operator-ids.R |only mutator-0.3.0/mutator/tests/testthat/test-operator-scores.R |only mutator-0.3.0/mutator/tests/testthat/test-operators-classic.R |only mutator-0.3.0/mutator/tests/testthat/test-operators-r-calls.R |only mutator-0.3.0/mutator/tests/testthat/test-operators-r-syntax.R |only mutator-0.3.0/mutator/tests/testthat/test-operators-spec.R |only mutator-0.3.0/mutator/tests/testthat/test-package-copy.R | 66 - mutator-0.3.0/mutator/tests/testthat/test-trivial-equivalence.R |only mutator-0.3.0/mutator/vignettes/configuration.Rmd | 82 + mutator-0.3.0/mutator/vignettes/continuous-integration.Rmd | 57 + 90 files changed, 1782 insertions(+), 606 deletions(-)
Title: Detection and Localization of Executable Files
Description: A set of functions to locate some programs available on the
user machine. It can locate 'Node.js', 'npm', 'LibreOffice',
'Microsoft Word', 'Microsoft PowerPoint', 'Microsoft Excel', 'Python',
'pip', 'Mozilla Firefox', 'Google Chrome', 'Air' and 'Pandoc'. The
user can test the availability of a program, optionally with a
required version, and call it with the functions system2() or
system(). This allows the use of a single function to retrieve the
path to a program regardless of the operating system and its
configuration.
Author: David Gohel [aut, cre],
ArData [cph]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between locatexec versions 0.2.0 dated 2026-05-25 and 0.2.1 dated 2026-10-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 6 ++++-- NEWS.md | 7 +++++++ R/read_version.R | 15 +++++++++++++++ tests/testthat/test-exec_version.R | 15 +++++++++++++++ 6 files changed, 50 insertions(+), 11 deletions(-)
Title: Tidyverse-First Data Fabrication
Description: Helps you imagine your data before you collect it. Builds a data
frame one column at a time, with hierarchical levels, cross-classified
levels, potential outcomes, and draws with a target intra-cluster
correlation, so that a research design can be simulated and diagnosed
before any data exist. Version 2.0 is a rewrite of the same public API on
'dplyr', 'tibble', 'purrr', and 'rlang'.
Author: Alexander Coppock [aut, cre] ,
Graeme Blair [aut] ,
Jasper Cooper [aut] ,
Macartan Humphreys [aut] ,
Aaron Rudkin [aut],
Neal Fultz [aut],
David C. Hall [ctb]
Maintainer: Alexander Coppock <acoppock@gmail.com>
Diff between fabricatr versions 1.0.2 dated 2024-01-16 and 2.0.0 dated 2026-10-21
fabricatr-1.0.2/fabricatr/R/aaa_fabricate.R |only fabricatr-1.0.2/fabricatr/R/add_level.R |only fabricatr-1.0.2/fabricatr/R/correlate.R |only fabricatr-1.0.2/fabricatr/R/cross_classify_helpers.R |only fabricatr-1.0.2/fabricatr/R/cross_levels.R |only fabricatr-1.0.2/fabricatr/R/draw_binary_icc.R |only fabricatr-1.0.2/fabricatr/R/draw_normal_icc.R |only fabricatr-1.0.2/fabricatr/R/fabricatr.R |only fabricatr-1.0.2/fabricatr/R/helper_functions.R |only fabricatr-1.0.2/fabricatr/R/modify_level.R |only fabricatr-1.0.2/fabricatr/R/nest_level.R |only fabricatr-1.0.2/fabricatr/R/reveal_outcomes.R |only fabricatr-1.0.2/fabricatr/R/variable_creation_functions.R |only fabricatr-1.0.2/fabricatr/man/draw_discrete.Rd |only fabricatr-1.0.2/fabricatr/man/fabricatr.Rd |only fabricatr-1.0.2/fabricatr/man/get_unique_variables_by_level.Rd |only fabricatr-1.0.2/fabricatr/tests/testthat/test-crossclassified.R |only fabricatr-1.0.2/fabricatr/tests/testthat/test-fabrication.R |only fabricatr-1.0.2/fabricatr/tests/testthat/test-helper-functions.R |only fabricatr-1.0.2/fabricatr/tests/testthat/test-hierarchical.R |only fabricatr-1.0.2/fabricatr/tests/testthat/test-misc.R |only fabricatr-1.0.2/fabricatr/tests/testthat/test-modify-design.R |only fabricatr-1.0.2/fabricatr/tests/testthat/test-multivariate.R |only fabricatr-1.0.2/fabricatr/tests/testthat/test-resampling.R |only fabricatr-1.0.2/fabricatr/tests/testthat/test-reveal-outcomes.R |only fabricatr-1.0.2/fabricatr/tests/testthat/test-split-apply-combine-level.R |only fabricatr-1.0.2/fabricatr/tests/testthat/test-start-with-existing-data.R |only fabricatr-1.0.2/fabricatr/tests/testthat/test-variables.R |only fabricatr-2.0.0/fabricatr/DESCRIPTION | 47 - fabricatr-2.0.0/fabricatr/LICENSE | 4 fabricatr-2.0.0/fabricatr/MD5 | 120 +- fabricatr-2.0.0/fabricatr/NAMESPACE | 43 fabricatr-2.0.0/fabricatr/NEWS.md | 143 ++- fabricatr-2.0.0/fabricatr/R/deprecated.R |only fabricatr-2.0.0/fabricatr/R/draw_ar.R |only fabricatr-2.0.0/fabricatr/R/draw_categorical.R |only fabricatr-2.0.0/fabricatr/R/draw_icc.R |only fabricatr-2.0.0/fabricatr/R/draw_multivariate.R | 216 +++- fabricatr-2.0.0/fabricatr/R/draw_simple.R |only fabricatr-2.0.0/fabricatr/R/fabricate.R |only fabricatr-2.0.0/fabricatr/R/levels.R |only fabricatr-2.0.0/fabricatr/R/potential_outcomes.R | 242 ++++- fabricatr-2.0.0/fabricatr/R/resample_data.R | 457 +++------- fabricatr-2.0.0/fabricatr/README.md |only fabricatr-2.0.0/fabricatr/build |only fabricatr-2.0.0/fabricatr/inst |only fabricatr-2.0.0/fabricatr/man/ALL.Rd | 25 fabricatr-2.0.0/fabricatr/man/add_level.Rd |only fabricatr-2.0.0/fabricatr/man/correlate.Rd | 73 - fabricatr-2.0.0/fabricatr/man/cross_levels.Rd | 67 - fabricatr-2.0.0/fabricatr/man/declare_level.Rd |only fabricatr-2.0.0/fabricatr/man/draw_binary.Rd |only fabricatr-2.0.0/fabricatr/man/draw_binary_icc.Rd | 45 fabricatr-2.0.0/fabricatr/man/draw_binomial.Rd |only fabricatr-2.0.0/fabricatr/man/draw_categorical.Rd |only fabricatr-2.0.0/fabricatr/man/draw_count.Rd |only fabricatr-2.0.0/fabricatr/man/draw_likert.Rd | 44 fabricatr-2.0.0/fabricatr/man/draw_multivariate.Rd | 70 - fabricatr-2.0.0/fabricatr/man/draw_normal_ar.Rd |only fabricatr-2.0.0/fabricatr/man/draw_normal_icc.Rd | 100 -- fabricatr-2.0.0/fabricatr/man/draw_ordered.Rd |only fabricatr-2.0.0/fabricatr/man/draw_quantile.Rd |only fabricatr-2.0.0/fabricatr/man/fabricate.Rd | 170 +-- fabricatr-2.0.0/fabricatr/man/fabricate_with_dots.Rd |only fabricatr-2.0.0/fabricatr/man/import_level.Rd |only fabricatr-2.0.0/fabricatr/man/join_using.Rd | 58 - fabricatr-2.0.0/fabricatr/man/link_levels.Rd |only fabricatr-2.0.0/fabricatr/man/modify_level.Rd |only fabricatr-2.0.0/fabricatr/man/nest_level.Rd |only fabricatr-2.0.0/fabricatr/man/potential_outcomes.Rd | 65 - fabricatr-2.0.0/fabricatr/man/recycle.Rd | 31 fabricatr-2.0.0/fabricatr/man/resample_data.Rd | 108 -- fabricatr-2.0.0/fabricatr/man/reveal_outcomes.Rd | 48 - fabricatr-2.0.0/fabricatr/man/split_quantile.Rd | 36 fabricatr-2.0.0/fabricatr/tests/testthat.R | 2 fabricatr-2.0.0/fabricatr/tests/testthat/helper.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-declaredesign-api.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-deprecated.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-draw-ar.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-draw-categorical.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-draw-icc.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-draw-multivariate.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-draw-simple.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-fabricate.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-levels-cross.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-levels-import.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-levels-modify.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-levels-structure.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-parity-102.R |only fabricatr-2.0.0/fabricatr/tests/testthat/test-potential-outcomes.R | 396 +++++--- fabricatr-2.0.0/fabricatr/tests/testthat/test-resample.R |only fabricatr-2.0.0/fabricatr/vignettes |only 92 files changed, 1340 insertions(+), 1270 deletions(-)
Title: Safe Anytime Valid Inference for Linear Models
Description: Anytime-valid inference for linear models, namely, sequential t-tests, sequential F-tests, and confidence sequences with time-uniform Type-I error and coverage guarantees. This allows hypotheses to be continuously tested without sacrificing false positive guarantees. Heteroskedasticity-robust and cluster-robust versions are provided. It is based on the methods documented in Lindon et al. (2026) <doi:10.1080/01621459.2026.2692052> and Lindon (2026) <doi:10.48550/arXiv.2610.25613>.
Author: Michael Lindon [aut, cre]
Maintainer: Michael Lindon <michael.s.lindon@gmail.com>
Diff between avlm versions 0.1.0 dated 2025-04-23 and 0.2.0 dated 2026-10-21
avlm-0.1.0/avlm/tests/testthat/test-faster_matrix.R |only avlm-0.2.0/avlm/DESCRIPTION | 10 avlm-0.2.0/avlm/MD5 | 44 ++- avlm-0.2.0/avlm/NAMESPACE | 6 avlm-0.2.0/avlm/NEWS.md | 52 ++++ avlm-0.2.0/avlm/R/av.R | 57 ---- avlm-0.2.0/avlm/R/av_anova.R | 94 +------ avlm-0.2.0/avlm/R/av_lm.R | 245 +++++++++++--------- avlm-0.2.0/avlm/R/cluster_robust.R |only avlm-0.2.0/avlm/R/e_variables.R | 117 ++++----- avlm-0.2.0/avlm/R/imports.R | 2 avlm-0.2.0/avlm/R/inference.R |only avlm-0.2.0/avlm/README.md | 5 avlm-0.2.0/avlm/build |only avlm-0.2.0/avlm/inst |only avlm-0.2.0/avlm/man/av.Rd | 2 avlm-0.2.0/avlm/man/av.aov.Rd | 2 avlm-0.2.0/avlm/man/av.lm.Rd | 42 ++- avlm-0.2.0/avlm/man/av_vcov.Rd |only avlm-0.2.0/avlm/man/check_g.Rd |only avlm-0.2.0/avlm/man/cluster_from_data.Rd |only avlm-0.2.0/avlm/man/is_singular_vcov.Rd |only avlm-0.2.0/avlm/man/log_E_CR.Rd |only avlm-0.2.0/avlm/man/optimal_g.Rd | 16 - avlm-0.2.0/avlm/man/resolve_cluster_factor.Rd |only avlm-0.2.0/avlm/man/vcov.avlm.Rd |only avlm-0.2.0/avlm/tests/testthat/test-cluster.R |only avlm-0.2.0/avlm/tests/testthat/test-edge-cases.R |only avlm-0.2.0/avlm/tests/testthat/test-lm.R | 22 + avlm-0.2.0/avlm/tests/testthat/test-optimal-g.R | 69 ++--- 30 files changed, 412 insertions(+), 373 deletions(-)
More information about anotherSAS7bdat at CRAN
Permanent link
More information about cndplantanalysis at CRAN
Permanent link
More information about gaussianprocesses at CRAN
Permanent link
Title: Weighted Double Score Matching for Survey-Weighted Causal
Inference
Description: Implements weighted double score matching (WDSM) for estimating
population-level causal effects from complex survey data. Combines
propensity scores and prognostic scores with survey design weights for
matching, survey-weighted imputation within match sets, and Hajek
normalization to target the population average treatment effect (PATE) and
the population average treatment effect on the treated (PATT). Supports
both retrospective (treatment-dependent) and prospective
(treatment-independent) sampling designs. Uses propensity probabilities
and arm-specific prognostic scores for matching, with a complete quadratic
bias correction in each arm's double score. Provides linearization-based
multinomial replication variance estimates and centered normal Wald
confidence intervals, retaining the original matching reuse coefficients
without re-matching. Supplied scores can be held fixed for inference
conditional on those scores. This weight-only interface does not encode
survey strata, clusters, o [...truncated...]
Author: Yukang Zeng [aut, cre],
Guangyu Tong [aut],
Jiaqi Tong [aut],
Haidong Lu [aut],
Bhramar Mukherjee [aut],
Fan Li [aut]
Maintainer: Yukang Zeng <ykzeng2019@gmail.com>
Diff between wdsmatch versions 0.2.1 dated 2026-09-19 and 0.2.2 dated 2026-10-21
DESCRIPTION | 12 +++++++----- MD5 | 14 ++++++++------ NEWS.md | 10 +++++++++- R/wdsmatchATE.R | 6 ++++++ R/wdsmatchATT.R | 6 ++++++ build |only inst |only man/wdsmatchATE.Rd | 6 ++++++ man/wdsmatchATT.Rd | 6 ++++++ 9 files changed, 48 insertions(+), 12 deletions(-)
Title: Trade and Environment Equilibrium Modeling System
Description: Equilibrium models are frequently employed to examine the
potential impacts of economic, energy, and trade policies as well as
form the foundation of most integrated assessment models. The 'teems'
package handles all aspects of running equilibrium models while
facilitating transparent and reproducible workflows.
Author: Matthew Cantele [aut, cre, cph] ,
Tom Kompas [ctb, ths] ,
Ha Van Pham [ctb] ,
Martin Ingram [ctb]
Maintainer: Matthew Cantele <matthew.cantele@protonmail.com>
Diff between teems versions 1.0.0 dated 2026-10-17 and 1.0.1 dated 2026-10-21
DESCRIPTION | 6 +-- MD5 | 46 +++++++++++++++-------------- NEWS.md | 10 ++++++ R/cmd_construct.R | 4 +- R/diagnostics_inform.R | 11 +++++- R/ems_solve.R | 10 ++++-- R/solution_files_clear.R | 27 ++++++++++++++--- R/solve_implement.R | 23 +++----------- R/solver_console.R |only R/sysdata.rda |binary inst/WORDLIST | 2 + inst/scripts/GTAP-AEZ/full_uniform.R | 4 +- inst/scripts/GTAP-E/full_uniform.R | 4 +- inst/scripts/GTAP-EP/full_uniform.R | 4 +- inst/scripts/GTAP-RE/full_uniform.R | 4 +- inst/scripts/GTAPv6/full_uniform.R | 4 +- inst/scripts/GTAPv7/full_uniform.R | 4 +- man/ems_RK.Rd | 10 ++++-- man/ems_solve.Rd | 10 ++++-- man/solve_in_situ.Rd | 10 ++++-- tests/testthat/_snaps/ems_solve.md | 6 +-- tests/testthat/test-ems_solve.R | 4 +- tests/testthat/test-inform_messages.R | 31 ++++++++++++++++++- tests/testthat/test-solution_files_clear.R | 25 +++++++++++++++ tests/testthat/test-solver_console.R |only 25 files changed, 179 insertions(+), 80 deletions(-)
Title: Spatial Transcriptomics Iterative Hierarchical Clustering
Description: Spatial transcriptomics iterative hierarchical clustering ('stIHC'), is a method for identifying spatial gene co-expression modules, defined as groups of genes with shared spatial expression patterns. The method is applicable across spatial transcriptomics technologies with differing spatial resolution, and provides a framework for investigating the spatial organisation of gene expression in tissues. For further details, see Higgins C., Li J.J., Carey M. <doi:10.1002/qub2.70011>.
Author: Catherine Higgins [aut, cre],
Jingyi Jessica Li [aut],
Michelle Carey [aut]
Maintainer: Catherine Higgins <catherine.higgins@mu.ie>
Diff between stIHC versions 0.1.0 dated 2026-01-12 and 0.1.1 dated 2026-10-21
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Tidy Dataframes and Expressions with Statistical Details
Description: Utilities for producing dataframes with rich details for the
most common types of statistical approaches and tests: parametric,
nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation
analyses, contingency table analyses, and meta-analyses. The functions
are pipe-friendly and provide a consistent syntax to work with tidy
data. These dataframes additionally contain expressions with
statistical details, and can be used in graphing packages. This
package also forms the statistical processing backend for
'ggstatsplot'. References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 2.2.0 dated 2026-10-17 and 2.2.1 dated 2026-10-21
statsExpressions-2.2.0/statsExpressions/man/rmd-fragments/summary_intro.Rmd |only statsExpressions-2.2.0/statsExpressions/tests/testthat/helper-one-sample.R |only statsExpressions-2.2.1/statsExpressions/DESCRIPTION | 6 statsExpressions-2.2.1/statsExpressions/MD5 | 171 ++-- statsExpressions-2.2.1/statsExpressions/NEWS.md | 21 statsExpressions-2.2.1/statsExpressions/R/add-expression-col.R | 3 statsExpressions-2.2.1/statsExpressions/R/centrality-description.R | 3 statsExpressions-2.2.1/statsExpressions/R/complete-subjects.R | 15 statsExpressions-2.2.1/statsExpressions/R/contingency-table.R | 16 statsExpressions-2.2.1/statsExpressions/R/data.R | 6 statsExpressions-2.2.1/statsExpressions/R/globals.R | 1 statsExpressions-2.2.1/statsExpressions/R/long-to-wide-converter.R | 44 - statsExpressions-2.2.1/statsExpressions/R/meta-analysis.R | 38 statsExpressions-2.2.1/statsExpressions/R/one-sample-test.R | 5 statsExpressions-2.2.1/statsExpressions/R/oneway-anova.R | 29 statsExpressions-2.2.1/statsExpressions/R/pairwise-contingency-table.R | 14 statsExpressions-2.2.1/statsExpressions/R/switch-functions.R | 43 - statsExpressions-2.2.1/statsExpressions/R/tidy-model-expressions.R | 37 statsExpressions-2.2.1/statsExpressions/README.md | 78 - statsExpressions-2.2.1/statsExpressions/inst/doc/statsExpressions.R | 25 statsExpressions-2.2.1/statsExpressions/inst/doc/statsExpressions.Rmd | 72 - statsExpressions-2.2.1/statsExpressions/inst/doc/statsExpressions.html | 92 +- statsExpressions-2.2.1/statsExpressions/inst/doc/stats_details.Rmd | 25 statsExpressions-2.2.1/statsExpressions/inst/doc/stats_details.html | 13 statsExpressions-2.2.1/statsExpressions/man/bugs_long.Rd | 2 statsExpressions-2.2.1/statsExpressions/man/centrality_description.Rd | 20 statsExpressions-2.2.1/statsExpressions/man/complete_subjects.Rd | 2 statsExpressions-2.2.1/statsExpressions/man/contingency_table.Rd | 26 statsExpressions-2.2.1/statsExpressions/man/corr_test.Rd | 10 statsExpressions-2.2.1/statsExpressions/man/examples/examples-contingency-table.R | 12 statsExpressions-2.2.1/statsExpressions/man/examples/examples-meta-analysis.R |only statsExpressions-2.2.1/statsExpressions/man/examples/examples-oneway-anova.R | 1 statsExpressions-2.2.1/statsExpressions/man/examples/examples-pairwise-comparisons.R | 11 statsExpressions-2.2.1/statsExpressions/man/iris_long.Rd | 2 statsExpressions-2.2.1/statsExpressions/man/long_to_wide_converter.Rd | 4 statsExpressions-2.2.1/statsExpressions/man/meta_analysis.Rd | 36 statsExpressions-2.2.1/statsExpressions/man/movies_long.Rd | 2 statsExpressions-2.2.1/statsExpressions/man/one_sample_test.Rd | 14 statsExpressions-2.2.1/statsExpressions/man/oneway_anova.Rd | 11 statsExpressions-2.2.1/statsExpressions/man/pairwise_comparisons.Rd | 25 statsExpressions-2.2.1/statsExpressions/man/pairwise_contingency_table.Rd | 19 statsExpressions-2.2.1/statsExpressions/man/rmd-fragments/one_sample_test.Rmd | 1 statsExpressions-2.2.1/statsExpressions/man/rmd-fragments/return.Rmd | 2 statsExpressions-2.2.1/statsExpressions/man/rmd-fragments/return_centrality.Rmd | 11 statsExpressions-2.2.1/statsExpressions/man/rmd-fragments/statsExpressions-package.Rmd | 31 statsExpressions-2.2.1/statsExpressions/man/rmd-fragments/table_intro.Rmd | 8 statsExpressions-2.2.1/statsExpressions/man/rmd-fragments/tidy_dataframes.Rmd |only statsExpressions-2.2.1/statsExpressions/man/statsExpressions-package.Rd | 29 statsExpressions-2.2.1/statsExpressions/man/tidy_model_expressions.Rd | 8 statsExpressions-2.2.1/statsExpressions/man/two_sample_test.Rd | 14 statsExpressions-2.2.1/statsExpressions/tests/testthat/_snaps/corr-test.md | 36 statsExpressions-2.2.1/statsExpressions/tests/testthat/_snaps/one-sample.md | 32 statsExpressions-2.2.1/statsExpressions/tests/testthat/_snaps/one-two-sample-dataframes.md | 12 statsExpressions-2.2.1/statsExpressions/tests/testthat/_snaps/oneway-anova-bayes.md | 95 +- statsExpressions-2.2.1/statsExpressions/tests/testthat/_snaps/oneway-anova-parametric.md | 20 statsExpressions-2.2.1/statsExpressions/tests/testthat/_snaps/oneway-anova-robust.md | 24 statsExpressions-2.2.1/statsExpressions/tests/testthat/_snaps/pairwise-comparisons.md | 412 +++++----- statsExpressions-2.2.1/statsExpressions/tests/testthat/_snaps/pairwise-contingency-table.md | 36 statsExpressions-2.2.1/statsExpressions/tests/testthat/_snaps/tidy-model-expressions.md | 41 statsExpressions-2.2.1/statsExpressions/tests/testthat/_snaps/two-sample-parametric.md | 24 statsExpressions-2.2.1/statsExpressions/tests/testthat/_snaps/two-sample-robust.md | 24 statsExpressions-2.2.1/statsExpressions/tests/testthat/helper.R | 28 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-centrality-description.R | 9 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-contingency-table.R | 62 + statsExpressions-2.2.1/statsExpressions/tests/testthat/test-corr-test.R | 117 -- statsExpressions-2.2.1/statsExpressions/tests/testthat/test-long-to-wide-converter.R | 29 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-meta-random-bayes.R | 2 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-meta-random-parametric.R | 2 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-meta-random-robust.R | 2 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-one-sample.R | 75 + statsExpressions-2.2.1/statsExpressions/tests/testthat/test-one-two-sample-dataframes.R | 4 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-oneway-anova-bayes.R | 156 --- statsExpressions-2.2.1/statsExpressions/tests/testthat/test-oneway-anova-nonparametric.R | 12 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-oneway-anova-parametric.R | 96 -- statsExpressions-2.2.1/statsExpressions/tests/testthat/test-oneway-anova-robust.R | 108 +- statsExpressions-2.2.1/statsExpressions/tests/testthat/test-pairwise-comparisons.R | 258 ++---- statsExpressions-2.2.1/statsExpressions/tests/testthat/test-pairwise-contingency-table.R | 147 +-- statsExpressions-2.2.1/statsExpressions/tests/testthat/test-stats-type-switch.R | 2 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-subject-id.R |only statsExpressions-2.2.1/statsExpressions/tests/testthat/test-tidy-model-expressions.R | 21 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-two-sample-bayes.R | 18 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-two-sample-nonparametric.R | 14 statsExpressions-2.2.1/statsExpressions/tests/testthat/test-two-sample-parametric.R | 104 -- statsExpressions-2.2.1/statsExpressions/tests/testthat/test-two-sample-robust.R | 111 -- statsExpressions-2.2.1/statsExpressions/vignettes/setup.R | 2 statsExpressions-2.2.1/statsExpressions/vignettes/statsExpressions.Rmd | 72 - statsExpressions-2.2.1/statsExpressions/vignettes/stats_details.Rmd | 25 statsExpressions-2.2.1/statsExpressions/vignettes/web_only/dataframe_outputs.Rmd | 43 - statsExpressions-2.2.1/statsExpressions/vignettes/web_only/return_value_schema.Rmd | 6 89 files changed, 1477 insertions(+), 1862 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and n-grams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph] ,
Kohei Watanabe [aut] ,
Haiyan Wang [aut] ,
Paul Nulty [aut] ,
Adam Obeng [aut] ,
Stefan Mueller [aut] ,
Akitaka Matsuo [aut] ,
William Lowe [aut] ,
Christian Mueller [ctb],
Olivier Delmarcelle [ctb] ,
European Research [...truncated...]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 4.5.0 dated 2026-08-04 and 4.5.1 dated 2026-10-21
DESCRIPTION | 9 - MD5 | 263 ++++++++++++++++---------------- NAMESPACE | 86 +++++----- NEWS.md | 36 ++++ R/casechange-functions.R | 24 -- R/corpus-methods.R | 9 - R/corpus_chunk.R | 4 R/dfm-print.R | 7 R/dfm.R | 47 +---- R/dfm_compress.R | 4 R/dfm_group.R | 5 R/dfm_lookup.R | 14 - R/dfm_match.R | 4 R/dfm_replace.R | 4 R/dfm_sample.R | 4 R/dfm_select.R | 4 R/dfm_subset.R | 4 R/dfm_trim.R | 4 R/dfm_weight.R | 107 +++++++++---- R/fcm-print.R | 27 +-- R/fcm_select.R | 10 - R/message.R | 132 +++++++++++++--- R/nfunctions.R | 18 -- R/summary.R | 4 R/texts.R | 4 R/tokens-methods.R | 11 - R/tokens.R | 52 ++++-- R/tokens_annotate.R | 5 R/tokens_chunk.R | 4 R/tokens_compound.R | 4 R/tokens_group.R | 4 R/tokens_lookup.R | 4 R/tokens_match.R | 5 R/tokens_ngrams.R | 4 R/tokens_replace.R | 6 R/tokens_sample.R | 4 R/tokens_segment.R | 6 R/tokens_select.R | 4 R/tokens_split.R | 4 R/tokens_subset.R | 4 R/tokens_trim.R | 5 R/wordstem.R | 8 README.md | 4 inst/doc/quickstart.Rmd | 2 inst/doc/quickstart.html | 50 ++---- inst/include/lib.h | 8 inst/include/tokens.h | 73 ++++++++ man/as.tokens.Rd | 2 man/corpus_chunk.Rd | 6 man/data_char_sampletext.Rd | 2 man/data_char_ukimmig2010.Rd | 2 man/data_corpus_inaugural.Rd | 2 man/data_dfm_lbgexample.Rd | 2 man/data_dictionary_LSD2015.Rd | 2 man/dfm.Rd | 6 man/dfm_compress.Rd | 6 man/dfm_group.Rd | 6 man/dfm_match.Rd | 6 man/dfm_replace.Rd | 6 man/dfm_sample.Rd | 6 man/dfm_subset.Rd | 6 man/dfm_tolower.Rd | 6 man/dfm_trim.Rd | 6 man/dfm_weight.Rd | 2 man/docfreq.Rd | 19 +- man/featfreq.Rd | 8 man/message_corpus.Rd | 4 man/message_dfm.Rd | 4 man/message_fcm.Rd |only man/message_tokens.Rd | 4 man/messages.Rd | 14 + man/tokens.Rd | 50 +++--- man/tokens_annotate.Rd | 6 man/tokens_chunk.Rd | 6 man/tokens_compound.Rd | 6 man/tokens_group.Rd | 6 man/tokens_lookup.Rd | 6 man/tokens_match.Rd | 6 man/tokens_ngrams.Rd | 6 man/tokens_replace.Rd | 6 man/tokens_sample.Rd | 6 man/tokens_segment.Rd | 6 man/tokens_select.Rd | 6 man/tokens_split.Rd | 6 man/tokens_subset.Rd | 6 man/tokens_tolower.Rd | 6 man/tokens_trim.Rd | 6 man/tokens_wordstem.Rd | 6 src/dfm.cpp | 27 ++- src/tokens_xptr.cpp | 67 -------- tests/testthat/test-casechanges.R | 24 +- tests/testthat/test-corpus.R | 36 ++-- tests/testthat/test-corpus_chunk.R | 2 tests/testthat/test-default-methods.R | 13 - tests/testthat/test-dfm.R | 259 +++++++++++++++++-------------- tests/testthat/test-dfm_compress.R | 13 - tests/testthat/test-dfm_group.R | 8 tests/testthat/test-dfm_lookup.R | 3 tests/testthat/test-dfm_match.R | 3 tests/testthat/test-dfm_replace.R | 3 tests/testthat/test-dfm_sample.R | 8 tests/testthat/test-dfm_select.R | 4 tests/testthat/test-dfm_subset.R | 8 tests/testthat/test-dfm_trim.R | 3 tests/testthat/test-dfm_weight.R | 123 ++++++++++++++ tests/testthat/test-dfm_wordstem.R | 3 tests/testthat/test-empty-objects.R | 24 +- tests/testthat/test-fcm.R | 17 +- tests/testthat/test-fcm_methods.R | 17 +- tests/testthat/test-lifecycle-changes.R | 57 +++++- tests/testthat/test-message.R | 55 ++++-- tests/testthat/test-quanteda_options.R | 2 tests/testthat/test-summary.R | 2 tests/testthat/test-tokens-word1.R | 2 tests/testthat/test-tokens-word4.R | 10 - tests/testthat/test-tokens.R | 34 +++- tests/testthat/test-tokens_annotate.R | 2 tests/testthat/test-tokens_chunk.R | 2 tests/testthat/test-tokens_compound.R | 2 tests/testthat/test-tokens_group.R | 2 tests/testthat/test-tokens_lookup.R | 2 tests/testthat/test-tokens_match.R | 3 tests/testthat/test-tokens_ngrams.R | 2 tests/testthat/test-tokens_replace.R | 2 tests/testthat/test-tokens_sample.R | 2 tests/testthat/test-tokens_segment.R | 2 tests/testthat/test-tokens_select.R | 14 - tests/testthat/test-tokens_split.R | 2 tests/testthat/test-tokens_subset.R | 2 tests/testthat/test-tokens_trim.R | 3 tests/testthat/test-tokens_wordstem.R | 2 tests/testthat/test-tokens_xptr.R | 1 vignettes/quickstart.Rmd | 2 133 files changed, 1332 insertions(+), 920 deletions(-)
Title: Permutations of Multisets in Cool-Lex Order
Description: A set of tools to permute multisets without loops or hash tables and to generate integer partitions. The permutation functions are based on C code from Aaron Williams. Cool-lex order is similar to colexicographical order. The algorithm is described in Williams, A. Loopless Generation of Multiset Permutations by Prefix Shifts. SODA 2009, Symposium on Discrete Algorithms, New York, United States. The permutation code is distributed without restrictions. Multinomial coefficients, Stirling numbers of the second kind and Bell numbers are computed exactly using the 'gmp' package. The package also generates the integer partitions of a positive, non-zero integer n. The C++ code for this is based on Python code from Jerome Kelleher, and the algorithm is described in Kelleher and O'Sullivan (2009) <doi:10.48550/arXiv.0909.2331>. The C++ code and Python code are distributed without conditions.
Author: James Curran [aut, cre],
Aaron Williams [aut],
Jerome Kelleher [aut]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between multicool versions 1.0.1 dated 2024-02-05 and 1.0.2 dated 2026-10-21
multicool-1.0.1/multicool/R/zzz.R |only multicool-1.0.1/multicool/src/multinomial.h |only multicool-1.0.2/multicool/DESCRIPTION | 23 multicool-1.0.2/multicool/MD5 | 46 - multicool-1.0.2/multicool/NAMESPACE | 30 multicool-1.0.2/multicool/NEWS.md |only multicool-1.0.2/multicool/R/RcppExports.R | 14 multicool-1.0.2/multicool/R/Stirling2.R | 267 +++++--- multicool-1.0.2/multicool/R/allPerm.R | 53 + multicool-1.0.2/multicool/R/elements.R |only multicool-1.0.2/multicool/R/genComp.R | 64 +- multicool-1.0.2/multicool/R/initMC.r | 97 +-- multicool-1.0.2/multicool/R/multicool-package.R |only multicool-1.0.2/multicool/R/multinom.R | 57 - multicool-1.0.2/multicool/R/nextPerm.R | 42 + multicool-1.0.2/multicool/build |only multicool-1.0.2/multicool/man/Bell.Rd | 19 multicool-1.0.2/multicool/man/Stirling2.Rd | 31 - multicool-1.0.2/multicool/man/allPerm.Rd | 20 multicool-1.0.2/multicool/man/genComp.Rd | 15 multicool-1.0.2/multicool/man/initMC.Rd | 24 multicool-1.0.2/multicool/man/multicool-package.Rd |only multicool-1.0.2/multicool/man/multinom.Rd | 47 - multicool-1.0.2/multicool/man/nextPerm.Rd | 29 multicool-1.0.2/multicool/src/Makevars |only multicool-1.0.2/multicool/src/RcppExports.cpp | 49 - multicool-1.0.2/multicool/src/compositions.cpp | 61 - multicool-1.0.2/multicool/src/multicool.cpp | 644 +++++++++++---------- 28 files changed, 915 insertions(+), 717 deletions(-)
Title: An Umbrella Framework for Multi-Source and Multi-Omics
Clustering
Description: An umbrella framework ("MoSaIC:" Multi-Omics Similarity Aggregation and Integrative Clustering in R) that unifies a large collection
of multi-source / multi-omics clustering methodologies behind a single,
consistent list-of-matrices interface. It spans five integration
paradigms - direct, similarity-based, graph-based, voting-based consensus,
and hierarchy-based - and bundles a complete downstream workflow for
method comparison and evaluation. The package features the multi-source
the ability to compare many algorithms on the same footing, a data-nugget
based feature-weighting scheme as a robust, big-data-friendly alternative to
variance weighting, and a downstream suite for cluster characterisation,
visualisation and biological interpretation.
Author: Bernard Isekah Osang'ir [aut, cre] ,
Marijke Van Moerbeke [aut],
Ziv Shkedy [ctb],
Surya Gupta [ctb],
Juergen Claesen [ctb]
Maintainer: Bernard Isekah Osang'ir <b.osangir@gmail.com>
Diff between MosaiClusteR versions 0.1.1 dated 2026-08-21 and 0.1.4 dated 2026-10-21
MosaiClusteR-0.1.1/MosaiClusteR/R/M_ABCpp.R |only MosaiClusteR-0.1.1/MosaiClusteR/man/M_ABCpp.Rd |only MosaiClusteR-0.1.4/MosaiClusteR/DESCRIPTION | 10 MosaiClusteR-0.1.4/MosaiClusteR/MD5 | 132 MosaiClusteR-0.1.4/MosaiClusteR/NAMESPACE | 4 MosaiClusteR-0.1.4/MosaiClusteR/NEWS.md | 54 MosaiClusteR-0.1.4/MosaiClusteR/R/ABCdeep.R | 10 MosaiClusteR-0.1.4/MosaiClusteR/R/ABCpp.R | 6 MosaiClusteR-0.1.4/MosaiClusteR/R/M_ABC.R |only MosaiClusteR-0.1.4/MosaiClusteR/R/M_ABCdeep.R | 6 MosaiClusteR-0.1.4/MosaiClusteR/R/M_ABCdist.R | 4 MosaiClusteR-0.1.4/MosaiClusteR/R/MosaiClusteR-package.R | 2 MosaiClusteR-0.1.4/MosaiClusteR/R/RcppExports.R | 30 MosaiClusteR-0.1.4/MosaiClusteR/R/aaa-globals.R |only MosaiClusteR-0.1.4/MosaiClusteR/R/cec.r | 470 +-- MosaiClusteR-0.1.4/MosaiClusteR/R/characterize.R | 72 MosaiClusteR-0.1.4/MosaiClusteR/R/cluster.R | 2 MosaiClusteR-0.1.4/MosaiClusteR/R/distance.R | 13 MosaiClusteR-0.1.4/MosaiClusteR/R/hec.r | 1462 +++++----- MosaiClusteR-0.1.4/MosaiClusteR/R/intnmf.R | 2 MosaiClusteR-0.1.4/MosaiClusteR/R/lucid.R | 2 MosaiClusteR-0.1.4/MosaiClusteR/R/manuscript-viz.R | 176 - MosaiClusteR-0.1.4/MosaiClusteR/R/nugget-clustering.R | 2 MosaiClusteR-0.1.4/MosaiClusteR/R/nuggets.R | 4 MosaiClusteR-0.1.4/MosaiClusteR/R/pathways-modern.R |only MosaiClusteR-0.1.4/MosaiClusteR/R/plots-dendro.r | 26 MosaiClusteR-0.1.4/MosaiClusteR/R/plots-features.r | 13 MosaiClusteR-0.1.4/MosaiClusteR/R/simulate-weighting.R | 6 MosaiClusteR-0.1.4/MosaiClusteR/R/snf.r | 212 - MosaiClusteR-0.1.4/MosaiClusteR/R/utils-characterize.r | 88 MosaiClusteR-0.1.4/MosaiClusteR/R/utils-evaluation.R | 4 MosaiClusteR-0.1.4/MosaiClusteR/R/weightedclust.r | 392 +- MosaiClusteR-0.1.4/MosaiClusteR/R/zzz.R | 2 MosaiClusteR-0.1.4/MosaiClusteR/README.md | 6 MosaiClusteR-0.1.4/MosaiClusteR/build/partial.rdb |binary MosaiClusteR-0.1.4/MosaiClusteR/inst/doc/MosaiClusteR.R | 6 MosaiClusteR-0.1.4/MosaiClusteR/inst/doc/MosaiClusteR.Rmd | 8 MosaiClusteR-0.1.4/MosaiClusteR/inst/doc/MosaiClusteR.html | 54 MosaiClusteR-0.1.4/MosaiClusteR/man/ABCdeep.SingleInMultiple.Rd | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/ABCpp.SingleInMultiple.Rd | 4 MosaiClusteR-0.1.4/MosaiClusteR/man/BinFeaturesPlot_SingleData.Rd | 9 MosaiClusteR-0.1.4/MosaiClusteR/man/Cluster.Rd | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/Cyclogram.Rd | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/Distance.Rd | 6 MosaiClusteR-0.1.4/MosaiClusteR/man/FeaturesOfCluster.Rd | 9 MosaiClusteR-0.1.4/MosaiClusteR/man/LUCID.Rd | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/M_ABC.Rd |only MosaiClusteR-0.1.4/MosaiClusteR/man/M_ABCdeep.Rd | 4 MosaiClusteR-0.1.4/MosaiClusteR/man/M_ABCdist.Rd | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/MosaiClusteR.Rd | 6 MosaiClusteR-0.1.4/MosaiClusteR/man/characterize_clusters.Rd | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/cluster_biology_panel.Rd | 4 MosaiClusteR-0.1.4/MosaiClusteR/man/cluster_k_sweep.Rd | 32 MosaiClusteR-0.1.4/MosaiClusteR/man/cluster_selection_plot.Rd | 29 MosaiClusteR-0.1.4/MosaiClusteR/man/clustering_concordance.Rd | 4 MosaiClusteR-0.1.4/MosaiClusteR/man/compare_methods_plot.Rd | 4 MosaiClusteR-0.1.4/MosaiClusteR/man/create_data_nuggets.Rd | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/embedding_plot.Rd | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/enriched_features.Rd |only MosaiClusteR-0.1.4/MosaiClusteR/man/f.clustABC.MultiSource.Rd | 4 MosaiClusteR-0.1.4/MosaiClusteR/man/figures/framework.svg | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/intNMF.Rd | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/mosaic_labels.Rd | 4 MosaiClusteR-0.1.4/MosaiClusteR/man/nugget_cluster.Rd | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/nugget_feature_weights.Rd | 2 MosaiClusteR-0.1.4/MosaiClusteR/man/plot_pathways.Rd |only MosaiClusteR-0.1.4/MosaiClusteR/man/simulate_weighting_regime.Rd | 6 MosaiClusteR-0.1.4/MosaiClusteR/tests/testthat/test-core.R | 2 MosaiClusteR-0.1.4/MosaiClusteR/tests/testthat/test-m-abc.R | 10 MosaiClusteR-0.1.4/MosaiClusteR/tests/testthat/test-weighting.R | 4 MosaiClusteR-0.1.4/MosaiClusteR/vignettes/MosaiClusteR.Rmd | 8 71 files changed, 1886 insertions(+), 1567 deletions(-)
Title: Calibrates and Reweights Units in Samples
Description: Provides user-friendly tools for calibration in survey sampling.
The package is production-oriented, and its interface is inspired by the famous
popular macro 'Calmar' for SAS, so that 'Calmar' users can quickly get used to
'icarus'. In addition to calibration (with linear, raking and logit methods),
'icarus' features functions for calibration on tight bounds and penalized
calibration.
Author: Antoine Rebecq [aut] ,
Jean Rubin [cre],
Khaled Larbi [aut],
Institut national de la statistique et des etudes economiques [cph]
Maintainer: Jean Rubin <jean.rubin@insee.fr>
Diff between icarus versions 0.3.3 dated 2025-09-09 and 0.3.4 dated 2026-10-21
DESCRIPTION | 14 MD5 | 76 - NAMESPACE | 28 R/calib.R | 318 ++--- R/calib_minbounds.R | 324 ++--- R/calibration.R | 628 +++++----- R/calmarFunctions.R | 1458 ++++++++++++------------ R/datasets.R | 224 +-- R/estimators.R | 162 +- R/ginv.R | 68 - R/margins.R | 166 +- R/modalities_functions.R | 272 ++-- R/penalized_calib.R | 646 +++++----- R/pointer.R | 18 README.md | 100 - inst/CITATION | 24 man/HTmean.Rd | 54 man/HTtotal.Rd | 46 man/addMargin.Rd | 64 - man/calWeights_movies.Rd | 40 man/calibration.Rd | 282 ++-- man/calibrationMarginStats.Rd | 94 - man/colToDummies.Rd | 66 - man/dataPop.Rd | 72 - man/data_employees.Rd | 58 man/marginStats.Rd | 94 - man/newMarginMatrix.Rd | 60 man/poptest_calmar.Rd | 58 man/poptest_calmar_nr.Rd | 60 man/regroupCalibrationModalities.Rd | 132 +- man/regroupModalities.Rd | 56 man/table_margins_1.Rd | 38 man/table_margins_2.Rd | 38 man/weightedMean.Rd | 52 man/weightedTotal.Rd | 44 tests/testthat.R | 4 tests/testthat/test_calibration.R | 494 ++++---- tests/testthat/test_calibration_small_dataset.R | 258 ++-- tests/testthat/test_ginv.R | 22 39 files changed, 3357 insertions(+), 3355 deletions(-)
Title: A Grammar of Interactive Graphics
Description: Builds interactive graphics from a declarative specification.
Marks, scales, tooltips, zoom, brushing, linked selections, animated
transitions and multi-plot layouts are declared in one pipeline and
stored as a plain R list that can be inspected, saved as JSON or
converted to 'Vega-Lite'. Plots are drawn in the browser with 'D3.js'
and work at the console, in R Markdown and 'Quarto' documents, and in
'Shiny' apps, where brushed selections are returned to R.
Author: Joash Joshua Ayo [aut, cre],
Mike Bostock [ctb, cph]
Maintainer: Joash Joshua Ayo <joashjoshua789@gmail.com>
Diff between glyph versions 0.1.1 dated 2026-07-08 and 0.2.0 dated 2026-10-21
glyph-0.1.1/glyph/inst/doc/comparison.R |only glyph-0.1.1/glyph/inst/doc/comparison.Rmd |only glyph-0.1.1/glyph/inst/doc/comparison.html |only glyph-0.1.1/glyph/man/scale.Rd |only glyph-0.1.1/glyph/vignettes/comparison.Rmd |only glyph-0.2.0/glyph/DESCRIPTION | 39 glyph-0.2.0/glyph/LICENSE | 4 glyph-0.2.0/glyph/MD5 | 148 glyph-0.2.0/glyph/NAMESPACE | 94 glyph-0.2.0/glyph/NEWS.md | 311 - glyph-0.2.0/glyph/R/animate.R | 127 glyph-0.2.0/glyph/R/glyph-package.R | 48 glyph-0.2.0/glyph/R/glyph.R | 199 glyph-0.2.0/glyph/R/interactive.R | 287 glyph-0.2.0/glyph/R/layout.R | 369 - glyph-0.2.0/glyph/R/marks.R | 484 + glyph-0.2.0/glyph/R/render.R | 988 ++- glyph-0.2.0/glyph/R/scales.R | 163 glyph-0.2.0/glyph/R/shiny.R |only glyph-0.2.0/glyph/R/stats.R |only glyph-0.2.0/glyph/R/themes.R | 291 glyph-0.2.0/glyph/build/vignette.rds |binary glyph-0.2.0/glyph/inst/COPYRIGHTS |only glyph-0.2.0/glyph/inst/WORDLIST |only glyph-0.2.0/glyph/inst/doc/custom-marks.R |only glyph-0.2.0/glyph/inst/doc/custom-marks.Rmd |only glyph-0.2.0/glyph/inst/doc/custom-marks.html |only glyph-0.2.0/glyph/inst/doc/getting-started.R | 59 glyph-0.2.0/glyph/inst/doc/getting-started.Rmd | 427 - glyph-0.2.0/glyph/inst/doc/getting-started.html | 2054 +++++- glyph-0.2.0/glyph/inst/doc/shiny.R |only glyph-0.2.0/glyph/inst/doc/shiny.Rmd |only glyph-0.2.0/glyph/inst/doc/shiny.html |only glyph-0.2.0/glyph/inst/examples |only glyph-0.2.0/glyph/inst/htmlwidgets/glyph.js | 4234 +++++++++----- glyph-0.2.0/glyph/inst/htmlwidgets/glyph.yaml | 14 glyph-0.2.0/glyph/inst/htmlwidgets/lib/d3-7/d3.min.js | 4 glyph-0.2.0/glyph/man/animate.Rd | 5 glyph-0.2.0/glyph/man/animation.Rd | 38 glyph-0.2.0/glyph/man/compile.Rd | 73 glyph-0.2.0/glyph/man/compose.Rd | 106 glyph-0.2.0/glyph/man/export.Rd | 58 glyph-0.2.0/glyph/man/facet.Rd | 57 glyph-0.2.0/glyph/man/glyph-package.Rd | 86 glyph-0.2.0/glyph/man/glyph-shiny.Rd |only glyph-0.2.0/glyph/man/glyph.Rd | 59 glyph-0.2.0/glyph/man/inset.Rd | 44 glyph-0.2.0/glyph/man/interact.Rd | 109 glyph-0.2.0/glyph/man/interactivity.Rd | 34 glyph-0.2.0/glyph/man/layout.Rd | 22 glyph-0.2.0/glyph/man/marginals.Rd | 58 glyph-0.2.0/glyph/man/mark_area.Rd | 46 glyph-0.2.0/glyph/man/mark_bar.Rd | 50 glyph-0.2.0/glyph/man/mark_boxplot.Rd |only glyph-0.2.0/glyph/man/mark_histogram.Rd |only glyph-0.2.0/glyph/man/mark_line.Rd | 50 glyph-0.2.0/glyph/man/mark_link.Rd | 46 glyph-0.2.0/glyph/man/mark_point.Rd | 54 glyph-0.2.0/glyph/man/mark_polygon.Rd |only glyph-0.2.0/glyph/man/mark_ribbon.Rd | 46 glyph-0.2.0/glyph/man/mark_rule.Rd | 68 glyph-0.2.0/glyph/man/mark_sina.Rd |only glyph-0.2.0/glyph/man/mark_text.Rd | 56 glyph-0.2.0/glyph/man/mark_violin.Rd |only glyph-0.2.0/glyph/man/marks.Rd | 38 glyph-0.2.0/glyph/man/print.glyph_layout.Rd |only glyph-0.2.0/glyph/man/print.glyph_spec.Rd | 51 glyph-0.2.0/glyph/man/render.Rd | 44 glyph-0.2.0/glyph/man/rendering.Rd | 57 glyph-0.2.0/glyph/man/scales.Rd | 96 glyph-0.2.0/glyph/man/selection.Rd | 84 glyph-0.2.0/glyph/man/set_scale.Rd |only glyph-0.2.0/glyph/man/summary.glyph_layout.Rd |only glyph-0.2.0/glyph/man/summary.glyph_spec.Rd |only glyph-0.2.0/glyph/man/theme_tokens.Rd | 118 glyph-0.2.0/glyph/man/theming.Rd | 31 glyph-0.2.0/glyph/man/titles.Rd | 46 glyph-0.2.0/glyph/man/to_vegalite.Rd | 38 glyph-0.2.0/glyph/tests/testthat.R | 8 glyph-0.2.0/glyph/tests/testthat/helper-browser.R |only glyph-0.2.0/glyph/tests/testthat/helper-inflate.R |only glyph-0.2.0/glyph/tests/testthat/test-browser-selection.R |only glyph-0.2.0/glyph/tests/testthat/test-browser-shiny.R |only glyph-0.2.0/glyph/tests/testthat/test-browser.R |only glyph-0.2.0/glyph/tests/testthat/test-core.R | 1176 ++- glyph-0.2.0/glyph/tests/testthat/test-data-payload.R |only glyph-0.2.0/glyph/tests/testthat/test-namespace.R |only glyph-0.2.0/glyph/tests/testthat/test-polygon.R |only glyph-0.2.0/glyph/tests/testthat/test-shiny.R |only glyph-0.2.0/glyph/tests/testthat/test-stat-marks.R |only glyph-0.2.0/glyph/vignettes/custom-marks-lollipop.png |only glyph-0.2.0/glyph/vignettes/custom-marks.Rmd |only glyph-0.2.0/glyph/vignettes/getting-started.Rmd | 427 - glyph-0.2.0/glyph/vignettes/shiny-app.png |only glyph-0.2.0/glyph/vignettes/shiny.Rmd |only 95 files changed, 9089 insertions(+), 4634 deletions(-)
Title: Inference of Gene Regulatory Networks
Description: We present 'corto' (Correlation Tool), a simple package to infer
gene regulatory networks and visualize master regulators from gene expression
data using DPI (Data Processing Inequality) and bootstrapping to recover edges.
An initial step is performed to calculate all significant
edges between a list of source nodes (centroids) and target genes.
Then a DPI step removes edges: by default, for each target only the edge
from the centroid with the strongest correlation is kept; optionally, the
ARACNe rule removes an edge only if it is the weakest in a triplet of two
centroids and one target. A bootstrapping process then calculates
the robustness of the network, eventually re-adding edges previously removed by DPI.
The algorithm has been optimized to run outside a computing cluster, using a fast correlation
implementation. The package finally provides functions to calculate network enrichment
analysis from RNA-Seq and ATAC-Seq signatures as described in the article by
Giorgi lab (2020) < [...truncated...]
Author: Federico M. Giorgi [aut, cre],
Daniele Mercatelli [ctb],
Gonzalo Lopez-Garcia [ctb],
Hugo Tovar [ctb],
Hualin Wang [ctb]
Maintainer: Federico M. Giorgi <federico.giorgi@gmail.com>
Diff between corto versions 1.3.1 dated 2026-08-21 and 1.4.0 dated 2026-10-21
DESCRIPTION | 14 ++-- MD5 | 17 ++--- NAMESPACE | 1 NEWS.md | 26 ++++++++ R/corto.R | 133 ++++++++++++++++++++++++++++++++++++------- inst/doc/corto_vignette.Rmd | 10 +-- inst/doc/corto_vignette.html | 58 ++++++++++-------- man/corto.Rd | 30 +++++++++ man/dpi_edges.Rd |only vignettes/corto_vignette.Rmd | 10 +-- 10 files changed, 230 insertions(+), 69 deletions(-)
Title: Bayesian MMRMs using 'brms'
Description: The mixed model for repeated measures (MMRM) is a popular
model for longitudinal clinical trial data with continuous endpoints,
and 'brms' is a powerful and versatile package for fitting Bayesian
regression models. The 'brms.mmrm' R package leverages 'brms' to run
MMRMs, and it supports a simplified interfaced to reduce difficulty
and align with the best practices of the life sciences. References:
Bürkner (2017) <doi:10.18637/jss.v080.i01>, Mallinckrodt (2008)
<doi:10.1177/009286150804200402>.
Author: William Michael Landau [aut, cre] ,
Kevin Kunzmann [aut] ,
Yoni Sidi [aut],
Christian Stock [aut] ,
Eli Lilly and Company [cph, fnd],
Boehringer Ingelheim Pharma GmbH & Co. KG [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between brms.mmrm versions 1.1.1 dated 2024-10-02 and 1.1.2 dated 2026-10-21
brms.mmrm-1.1.1/brms.mmrm/vignettes/sbc/R/fst.R |only brms.mmrm-1.1.1/brms.mmrm/vignettes/sbc/results/autoregressive.fst |only brms.mmrm-1.1.1/brms.mmrm/vignettes/sbc/results/autoregressive_moving_average.fst |only brms.mmrm-1.1.1/brms.mmrm/vignettes/sbc/results/compound_symmetry.fst |only brms.mmrm-1.1.1/brms.mmrm/vignettes/sbc/results/diagonal.fst |only brms.mmrm-1.1.1/brms.mmrm/vignettes/sbc/results/moving_average.fst |only brms.mmrm-1.1.1/brms.mmrm/vignettes/sbc/results/subgroup.fst |only brms.mmrm-1.1.1/brms.mmrm/vignettes/sbc/results/unstructured.fst |only brms.mmrm-1.1.2/brms.mmrm/DESCRIPTION | 25 brms.mmrm-1.1.2/brms.mmrm/MD5 | 233 brms.mmrm-1.1.2/brms.mmrm/NAMESPACE | 134 brms.mmrm-1.1.2/brms.mmrm/NEWS.md | 7 brms.mmrm-1.1.2/brms.mmrm/R/brm_archetype.R | 9 brms.mmrm-1.1.2/brms.mmrm/R/brm_archetype_successive_cells.R | 15 brms.mmrm-1.1.2/brms.mmrm/R/brm_archetype_successive_effects.R | 4 brms.mmrm-1.1.2/brms.mmrm/R/brm_data_chronologize.R | 2 brms.mmrm-1.1.2/brms.mmrm/R/brm_formula.R | 26 brms.mmrm-1.1.2/brms.mmrm/R/brm_formula_sigma.R | 2 brms.mmrm-1.1.2/brms.mmrm/R/brm_marginal_draws.R | 12 brms.mmrm-1.1.2/brms.mmrm/R/brm_marginal_draws_average.R | 2 brms.mmrm-1.1.2/brms.mmrm/R/brm_marginal_probabilities.R | 4 brms.mmrm-1.1.2/brms.mmrm/R/brm_marginal_summaries.R | 8 brms.mmrm-1.1.2/brms.mmrm/R/brm_plot_compare.R | 3 brms.mmrm-1.1.2/brms.mmrm/R/brm_recenter_nuisance.R | 18 brms.mmrm-1.1.2/brms.mmrm/R/brm_transform_marginal.R | 11 brms.mmrm-1.1.2/brms.mmrm/R/utils_archetype.R | 192 brms.mmrm-1.1.2/brms.mmrm/R/utils_assert.R | 11 brms.mmrm-1.1.2/brms.mmrm/R/utils_draws.R | 3 brms.mmrm-1.1.2/brms.mmrm/README.md | 1 brms.mmrm-1.1.2/brms.mmrm/build/vignette.rds |binary brms.mmrm-1.1.2/brms.mmrm/inst/WORDLIST | 4 brms.mmrm-1.1.2/brms.mmrm/inst/bibliography.bib | 45 brms.mmrm-1.1.2/brms.mmrm/inst/doc/archetypes.Rmd | 183 brms.mmrm-1.1.2/brms.mmrm/inst/doc/archetypes.html | 201 brms.mmrm-1.1.2/brms.mmrm/inst/doc/bcva.Rmd | 1335 +- brms.mmrm-1.1.2/brms.mmrm/inst/doc/bcva.html | 1335 +- brms.mmrm-1.1.2/brms.mmrm/inst/doc/fev1.Rmd | 941 - brms.mmrm-1.1.2/brms.mmrm/inst/doc/fev1.html | 937 - brms.mmrm-1.1.2/brms.mmrm/inst/doc/inference.html | 63 brms.mmrm-1.1.2/brms.mmrm/inst/doc/map.Rmd |only brms.mmrm-1.1.2/brms.mmrm/inst/doc/map.html |only brms.mmrm-1.1.2/brms.mmrm/inst/doc/model.html | 21 brms.mmrm-1.1.2/brms.mmrm/inst/doc/sbc.R | 17 brms.mmrm-1.1.2/brms.mmrm/inst/doc/sbc.Rmd | 17 brms.mmrm-1.1.2/brms.mmrm/inst/doc/sbc.html | 202 brms.mmrm-1.1.2/brms.mmrm/inst/doc/simulation.Rmd | 115 brms.mmrm-1.1.2/brms.mmrm/inst/doc/simulation.html | 120 brms.mmrm-1.1.2/brms.mmrm/inst/doc/subgroup.Rmd | 231 brms.mmrm-1.1.2/brms.mmrm/inst/doc/subgroup.html | 202 brms.mmrm-1.1.2/brms.mmrm/inst/doc/usage.Rmd | 332 brms.mmrm-1.1.2/brms.mmrm/inst/doc/usage.html | 382 brms.mmrm-1.1.2/brms.mmrm/man/brm_archetype_average_cells.Rd | 38 brms.mmrm-1.1.2/brms.mmrm/man/brm_archetype_average_effects.Rd | 38 brms.mmrm-1.1.2/brms.mmrm/man/brm_archetype_cells.Rd | 38 brms.mmrm-1.1.2/brms.mmrm/man/brm_archetype_effects.Rd | 38 brms.mmrm-1.1.2/brms.mmrm/man/brm_archetype_successive_cells.Rd | 38 brms.mmrm-1.1.2/brms.mmrm/man/brm_archetype_successive_effects.Rd | 38 brms.mmrm-1.1.2/brms.mmrm/man/brm_data.Rd | 6 brms.mmrm-1.1.2/brms.mmrm/man/brm_data_change.Rd | 6 brms.mmrm-1.1.2/brms.mmrm/man/brm_data_chronologize.Rd | 6 brms.mmrm-1.1.2/brms.mmrm/man/brm_formula.Rd | 23 brms.mmrm-1.1.2/brms.mmrm/man/brm_formula_sigma.Rd | 6 brms.mmrm-1.1.2/brms.mmrm/man/brm_marginal_data.Rd | 12 brms.mmrm-1.1.2/brms.mmrm/man/brm_marginal_draws.Rd | 12 brms.mmrm-1.1.2/brms.mmrm/man/brm_marginal_draws_average.Rd | 12 brms.mmrm-1.1.2/brms.mmrm/man/brm_marginal_grid.Rd | 12 brms.mmrm-1.1.2/brms.mmrm/man/brm_marginal_probabilities.Rd | 12 brms.mmrm-1.1.2/brms.mmrm/man/brm_marginal_summaries.Rd | 12 brms.mmrm-1.1.2/brms.mmrm/man/brm_model.Rd | 8 brms.mmrm-1.1.2/brms.mmrm/man/brm_plot_compare.Rd | 4 brms.mmrm-1.1.2/brms.mmrm/man/brm_plot_draws.Rd | 4 brms.mmrm-1.1.2/brms.mmrm/man/brm_prior_archetype.Rd | 8 brms.mmrm-1.1.2/brms.mmrm/man/brm_prior_label.Rd | 8 brms.mmrm-1.1.2/brms.mmrm/man/brm_prior_simple.Rd | 8 brms.mmrm-1.1.2/brms.mmrm/man/brm_prior_template.Rd | 8 brms.mmrm-1.1.2/brms.mmrm/man/brm_recenter_nuisance.Rd | 15 brms.mmrm-1.1.2/brms.mmrm/man/brm_simulate_categorical.Rd | 10 brms.mmrm-1.1.2/brms.mmrm/man/brm_simulate_continuous.Rd | 10 brms.mmrm-1.1.2/brms.mmrm/man/brm_simulate_outline.Rd | 10 brms.mmrm-1.1.2/brms.mmrm/man/brm_simulate_prior.Rd | 10 brms.mmrm-1.1.2/brms.mmrm/man/brm_simulate_simple.Rd | 10 brms.mmrm-1.1.2/brms.mmrm/man/brm_transform_marginal.Rd | 12 brms.mmrm-1.1.2/brms.mmrm/tests/testthat/test-brm_archetype_cells.R | 47 brms.mmrm-1.1.2/brms.mmrm/tests/testthat/test-brm_archetype_successive_cells.R | 12 brms.mmrm-1.1.2/brms.mmrm/tests/testthat/test-brm_archetype_successive_effects.R | 12 brms.mmrm-1.1.2/brms.mmrm/tests/testthat/test-brm_data.R | 24 brms.mmrm-1.1.2/brms.mmrm/tests/testthat/test-brm_prior_template.R | 3 brms.mmrm-1.1.2/brms.mmrm/tests/testthat/test-brm_recenter_nuisance.R | 28 brms.mmrm-1.1.2/brms.mmrm/tests/testthat/test-brm_transform_marginal.R | 163 brms.mmrm-1.1.2/brms.mmrm/vignettes/archetypes.Rmd | 183 brms.mmrm-1.1.2/brms.mmrm/vignettes/archetypes.Rmd.source | 4 brms.mmrm-1.1.2/brms.mmrm/vignettes/archetypes_figures/archetype_compare_data-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/bcva.Rmd | 1335 +- brms.mmrm-1.1.2/brms.mmrm/vignettes/bcva_figures/descr_3-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/fev1.Rmd | 941 - brms.mmrm-1.1.2/brms.mmrm/vignettes/fev1_figures/descr_3-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/map |only brms.mmrm-1.1.2/brms.mmrm/vignettes/map.Rmd |only brms.mmrm-1.1.2/brms.mmrm/vignettes/map.Rmd.source |only brms.mmrm-1.1.2/brms.mmrm/vignettes/render.R |only brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc.Rmd | 17 brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/R/csv.R |only brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/R/simulate.R | 3 brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/_targets.R | 15 brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/renv.lock | 5766 +++++++--- brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/renv/activate.R | 372 brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/results/autoregressive.csv |only brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/results/autoregressive_moving_average.csv |only brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/results/compound_symmetry.csv |only brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/results/diagonal.csv |only brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/results/moving_average.csv |only brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/results/subgroup.csv |only brms.mmrm-1.1.2/brms.mmrm/vignettes/sbc/results/unstructured.csv |only brms.mmrm-1.1.2/brms.mmrm/vignettes/simulation.Rmd | 115 brms.mmrm-1.1.2/brms.mmrm/vignettes/subgroup.Rmd | 231 brms.mmrm-1.1.2/brms.mmrm/vignettes/subgroup/draws-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/subgroup/drawscustom-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/subgroup/reduced-model-comparison-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/subgroup/subgroup-vs-data-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/subgroup/subgroup-vs-data-levels-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/usage.Rmd | 332 brms.mmrm-1.1.2/brms.mmrm/vignettes/usage.Rmd.source | 2 brms.mmrm-1.1.2/brms.mmrm/vignettes/usage/difference-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/usage/differencecustom-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/usage/draws-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/usage/drawscustom-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/usage/priorvsposterior-1.png |binary brms.mmrm-1.1.2/brms.mmrm/vignettes/usage/response-1.png |binary 128 files changed, 10953 insertions(+), 6529 deletions(-)
Title: Client for Central Bank APIs
Description: A client for retrieving data and metadata from central bank
APIs including 'Banco Central do Brasil' (BCB), 'Banco de España'
(BdE), 'Banco de México' (Banxico), 'Banco de Portugal' (BdP), 'Bank
for International Settlements' (BIS), 'Bank of Canada' (BoC), 'Bank
of England' (BoE), 'Bank of Israel' (BoI), 'Bank of Japan' (BoJ),
'Banque de France' (BdF), 'Czech National Bank' (CNB), 'Deutsche
Bundesbank' (BBk), 'European Central Bank' (ECB), 'National Bank of
Belgium' (NBB), 'National Bank of Poland' (NBP), 'Norges Bank'
(NoB), 'Oesterreichische Nationalbank' (OeNB), 'Sveriges Riksbank'
(SRb), and 'Swiss National Bank' (SNB).
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between bbk versions 0.13.0 dated 2026-08-28 and 0.14.0 dated 2026-10-21
DESCRIPTION | 27 +-- MD5 | 239 +++++++++++++++--------------- NAMESPACE | 3 NEWS.md | 20 ++ R/assertions.R | 22 ++ R/banxico.R | 14 - R/bbk-package.R | 8 + R/bbk.R | 9 - R/bcb.R | 4 R/bde.R | 11 - R/bdf.R | 13 - R/bdp.R | 37 ++-- R/bis.R | 2 R/boc.R | 27 +-- R/boe.R | 11 + R/boj.R | 25 +-- R/cache.R | 11 + R/cnb.R | 48 +++--- R/ecb.R | 2 R/fx-rates.R | 5 R/httr2.R | 4 R/nbb.R |only R/nob.R | 61 +------ R/onb.R | 29 ++- R/sdmx.R | 66 +++++++- R/snb.R | 23 +- R/srb.R | 16 -- R/utils.R | 10 + README.md | 5 man/banxico_data.Rd | 1 man/banxico_metadata.Rd | 2 man/bbk-package.Rd | 14 + man/bbk_data.Rd | 1 man/bbk_dimension.Rd | 2 man/bbk_metadata.Rd | 2 man/bbk_series.Rd | 1 man/bcb_currencies.Rd | 2 man/bcb_data.Rd | 1 man/bcb_expectations.Rd | 1 man/bcb_fx_rates.Rd | 1 man/bcb_inflation.Rd | 1 man/bcb_selic.Rd | 1 man/bcb_top5.Rd | 1 man/bde_data.Rd | 1 man/bde_latest.Rd | 1 man/bdf_codelist.Rd | 1 man/bdf_data.Rd | 1 man/bdf_dataset.Rd | 1 man/bdf_dimension.Rd | 2 man/bdp_data.Rd | 1 man/bdp_dataset.Rd | 2 man/bdp_dimension.Rd | 2 man/bdp_domain.Rd | 2 man/bdp_series.Rd | 2 man/bis_data.Rd | 1 man/bis_dimension.Rd | 2 man/bis_metadata.Rd | 2 man/boc_data.Rd | 1 man/boe_data.Rd | 1 man/boi_data.Rd | 1 man/boi_dimension.Rd | 2 man/boi_metadata.Rd | 2 man/boj_data.Rd | 1 man/boj_metadata.Rd | 2 man/cache.Rd | 11 + man/cnb_czeonia.Rd | 1 man/cnb_data.Rd | 1 man/cnb_dimension.Rd | 2 man/cnb_fx_other_rates.Rd | 1 man/cnb_fx_rates.Rd | 4 man/cnb_indicators.Rd | 2 man/cnb_pribor.Rd | 1 man/cnb_snapshots.Rd | 2 man/cnb_tree.Rd | 2 man/ecb_data.Rd | 1 man/ecb_dimension.Rd | 2 man/ecb_metadata.Rd | 2 man/nbb_data.Rd |only man/nbb_dimension.Rd |only man/nbb_metadata.Rd |only man/nbp_fx_rates.Rd | 1 man/nbp_gold.Rd | 1 man/nob_data.Rd | 1 man/nob_dimension.Rd | 4 man/nob_metadata.Rd | 2 man/onb_data.Rd | 7 man/onb_dimension.Rd | 2 man/onb_frequency.Rd | 2 man/onb_hierarchy.Rd | 2 man/onb_metadata.Rd | 2 man/onb_toc.Rd | 2 man/snb_data.Rd | 1 man/snb_dimension.Rd | 2 man/snb_metadata.Rd | 2 man/snb_toc.Rd | 2 man/srb_calendar.Rd | 2 man/srb_cross_rates.Rd | 1 man/srb_data.Rd | 1 man/srb_series.Rd | 2 tests/testthat/_snaps/assertions.md |only tests/testthat/_snaps/nbb.md |only tests/testthat/fixtures/nbb-data.xml |only tests/testthat/fixtures/nbb-dimension.xml |only tests/testthat/fixtures/nbb-metadata.xml |only tests/testthat/test-assertions.R |only tests/testthat/test-banxico.R | 2 tests/testthat/test-bbk.R | 4 tests/testthat/test-bcb.R | 14 - tests/testthat/test-bde.R | 5 tests/testthat/test-bdp.R | 45 +++++ tests/testthat/test-bis.R | 16 +- tests/testthat/test-boc.R | 51 ++++++ tests/testthat/test-boe.R | 10 - tests/testthat/test-boi.R | 8 - tests/testthat/test-boj.R | 40 +++-- tests/testthat/test-cnb.R | 46 +++++ tests/testthat/test-ecb.R | 8 - tests/testthat/test-exchange-rates.R | 8 - tests/testthat/test-httr2.R |only tests/testthat/test-nbb.R |only tests/testthat/test-nbp.R | 16 +- tests/testthat/test-nob.R | 81 ---------- tests/testthat/test-onb.R | 60 +++++++ tests/testthat/test-sdmx.R | 109 +++++++++++++ tests/testthat/test-snb.R | 40 +++-- tests/testthat/test-srb.R | 38 +++- tests/testthat/test-utils.R |only 127 files changed, 974 insertions(+), 512 deletions(-)
Title: One Sample Mendelian Randomization and Instrumental Variable
Analyses
Description: Useful functions for one-sample (individual level data)
Mendelian randomization and instrumental variable analyses. The
package includes implementations of; the Sanderson and Windmeijer
(2016) <doi:10.1016/j.jeconom.2015.06.004> conditional F-statistic,
the multiplicative structural mean model Hernán and Robins (2006)
<doi:10.1097/01.ede.0000222409.00878.37>, the logistic structural
mean model Vansteelandt and Goetghebeur (2003)
<doi:10.1046/j.1369-7412.2003.00417.x>, and two-stage predictor
substitution and two-stage residual inclusion estimators explained by
Terza et al. (2008) <doi:10.1016/j.jhealeco.2007.09.009>.
Author: Tom Palmer [aut, cre] ,
Wes Spiller [aut] ,
Eleanor Sanderson [aut] ,
Nicolai Vitt [aut]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
Diff between OneSampleMR versions 0.1.8 dated 2026-07-08 and 0.1.9 dated 2026-10-21
.aspell |only DESCRIPTION | 14 ++-- MD5 | 47 ++++++++------- NAMESPACE | 4 + NEWS.md | 16 +++++ R/lsmm.R |only R/msmm.R | 87 ++++++++++++++++++++++++++-- R/tsps.R | 82 +++++++++++---------------- R/tsri.R | 86 ++++++++++------------------ R/utils.R |only README.md | 3 inst/CITATION | 12 ++- inst/doc/compare-smm-fits.Rmd | 2 inst/doc/compare-smm-fits.html | 106 +++++++++++++++++------------------ inst/doc/f-statistic-comparison.Rmd | 2 inst/doc/f-statistic-comparison.html | 32 ++++------ man/OneSampleMR-package.Rd | 2 man/lsmm.Rd |only man/msmm.Rd | 29 ++++++++- man/summary.lsmm.Rd |only man/tsps.Rd | 5 + man/tsri.Rd | 5 + tests/testthat/test-lsmm.R |only tests/testthat/test-msmm.R | 66 ++++++++++++++++++++- tests/testthat/test-tsps.R | 80 ++++++++++++++++++++++++++ tests/testthat/test-tsri.R | 80 ++++++++++++++++++++++++++ vignettes/compare-smm-fits.Rmd | 2 vignettes/f-statistic-comparison.Rmd | 2 28 files changed, 538 insertions(+), 226 deletions(-)
Title: Quality Control and Semantic Enrichment of Datasets
Description: A tool for the preparation and enrichment of health datasets for analysis (Toner et al. (2023) <doi:10.1093/gigascience/giad030>). Provides functionality for assessing data quality and for improving the reliability and machine interpretability of a dataset.
'eHDPrep' also enables semantic enrichment of a dataset where metavariables are discovered from the relationships between input variables determined from user-provided ontologies.
Author: Tom Toner [aut] ,
Kluivert Boakye Duah [aut] ,
Ian Overton [aut, cre]
Maintainer: Ian Overton <I.Overton@qub.ac.uk>
Diff between eHDPrep versions 2.0.0 dated 2026-09-22 and 2.0.1 dated 2026-10-21
DESCRIPTION | 11 ++++++++--- MD5 | 16 ++++++++++------ NEWS.md | 7 +++++++ inst/doc/Introduction_to_eHDPrep.R | 4 ++-- inst/doc/Introduction_to_eHDPrep.Rmd | 6 +++--- inst/doc/Introduction_to_eHDPrep.pdf |binary inst/extdata/images/workflow.png |only inst/extdata/images/workflow.svg |only vignettes/Introduction_to_eHDPrep.Rmd | 6 +++--- vignettes/images/workflow.png |only vignettes/images/workflow.svg |only 11 files changed, 33 insertions(+), 17 deletions(-)
Title: Functions and Utilities for Tidy Time Series Forecasting and
Time Series Cross-Validation
Description: Functions and tools for tidy time series analysis and
forecasting as well as time series cross-validation. This is mainly a set
of wrapper and helper functions as well as some extensions for the packages
'tsibble', 'fable', and 'fabletools'.
Author: Alexander Haeusser [aut, cre, cph]
Maintainer: Alexander Haeusser <alexander-haeusser@gmx.de>
Diff between tscv versions 1.0.1 dated 2026-09-02 and 1.0.2 dated 2026-10-21
DESCRIPTION | 8 - MD5 | 168 ++++++++++++------------ NAMESPACE | 170 +++++++++++++------------ NEWS.md | 4 build/vignette.rds |binary inst/doc/vignette_01_monthly_expanding.html | 2 inst/doc/vignette_02_hourly_fixed.html | 2 inst/doc/vignette_03_data_visualization.html | 2 man/DSHW.Rd | 10 - man/MEDIAN.Rd | 10 - man/NAIVE2.Rd | 10 - man/SMEAN.Rd | 10 - man/SMEDIAN.Rd | 10 - man/SNAIVE2.Rd | 10 - man/TBATS.Rd | 10 - man/acf_vec.Rd | 20 +- man/check_data.Rd | 6 man/estimate_acf.Rd | 20 +- man/estimate_kurtosis.Rd | 20 +- man/estimate_mode.Rd | 20 +- man/estimate_pacf.Rd | 20 +- man/estimate_skewness.Rd | 20 +- man/figures/README-expanding-window-plot-1.svg | 50 +++---- man/figures/README-fixed-window-plot-1.svg | 50 +++---- man/fitted.DSHW.Rd | 10 - man/fitted.MEDIAN.Rd | 10 - man/fitted.NAIVE2.Rd | 10 - man/fitted.SMEAN.Rd | 10 - man/fitted.SMEDIAN.Rd | 10 - man/fitted.SNAIVE2.Rd | 10 - man/fitted.TBATS.Rd | 10 - man/forecast.DSHW.Rd | 10 - man/forecast.MEDIAN.Rd | 10 - man/forecast.NAIVE2.Rd | 10 - man/forecast.SMEAN.Rd | 10 - man/forecast.SMEDIAN.Rd | 10 - man/forecast.SNAIVE2.Rd | 10 - man/forecast.TBATS.Rd | 10 - man/interpolate_missing.Rd | 6 man/mae_vec.Rd | 18 +- man/make_accuracy.Rd | 18 +- man/make_errors.Rd | 18 +- man/make_future.Rd | 12 - man/make_split.Rd | 12 - man/make_tsibble.Rd | 12 - man/mape_vec.Rd | 18 +- man/me_vec.Rd | 18 +- man/model_sum.DSHW.Rd | 10 - man/model_sum.MEDIAN.Rd | 10 - man/model_sum.NAIVE2.Rd | 10 - man/model_sum.SMEAN.Rd | 10 - man/model_sum.SMEDIAN.Rd | 10 - man/model_sum.SNAIVE2.Rd | 10 - man/model_sum.TBATS.Rd | 10 - man/mpe_vec.Rd | 18 +- man/mse_vec.Rd | 18 +- man/pacf_vec.Rd | 20 +- man/plot_bar.Rd | 22 +-- man/plot_density.Rd | 22 +-- man/plot_histogram.Rd | 22 +-- man/plot_line.Rd | 22 +-- man/plot_point.Rd | 22 +-- man/plot_qq.Rd | 22 +-- man/residuals.DSHW.Rd | 10 - man/residuals.MEDIAN.Rd | 10 - man/residuals.NAIVE2.Rd | 10 - man/residuals.SMEAN.Rd | 10 - man/residuals.SMEDIAN.Rd | 10 - man/residuals.SNAIVE2.Rd | 10 - man/residuals.TBATS.Rd | 10 - man/rmse_vec.Rd | 18 +- man/scale_color_tscv.Rd | 22 +-- man/scale_fill_tscv.Rd | 22 +-- man/slice_test.Rd | 12 - man/slice_train.Rd | 12 - man/smape_vec.Rd | 18 +- man/smooth_outlier.Rd | 6 man/split_index.Rd | 12 - man/summarise_data.Rd | 20 +- man/summarise_split.Rd | 20 +- man/summarise_stats.Rd | 20 +- man/theme_tscv.Rd | 22 +-- man/tscv_cols.Rd | 22 +-- man/tscv_pal.Rd | 22 +-- tests/testthat/test-methods-fable.R | 8 - 85 files changed, 765 insertions(+), 743 deletions(-)
Title: Bayesian Modelling of Raman Spectroscopy
Description: Sequential Monte Carlo (SMC) algorithms for fitting a generalised additive
mixed model (GAMM) to surface-enhanced resonance Raman spectroscopy (SERRS),
using the method of Moores et al. (2026) <doi:10.48550/arXiv.1604.07299>. Multivariate
observations of SERRS are highly collinear and lend themselves to a reduced-rank
representation. The GAMM separates the SERRS signal into three components: a
sequence of Lorentzian, Gaussian, or pseudo-Voigt peaks; a smoothly-varying baseline;
and additive white noise. The parameters of each component of the model are estimated
iteratively using SMC. The posterior distributions of the parameters given the observed
spectra are represented as a population of weighted particles.
Author: Matt Moores [aut, cre] ,
Jake Carson [aut] ,
Dirk Eddelbuettel [ctb] ,
Benjamin Moskowitz [ctb] ,
Kirsten Gracie [dtc],
Karen Faulds [dtc] ,
Duncan Graham [dtc] ,
Mark Girolami [aut] ,
Engineering and Physical Sciences Research Council [fnd] ,
Univer [...truncated...]
Maintainer: Matt Moores <mmoores@gmail.com>
Diff between serrsBayes versions 0.6-0 dated 2026-10-03 and 0.6-1 dated 2026-10-21
serrsBayes-0.6-0/serrsBayes/inst/image |only serrsBayes-0.6-0/serrsBayes/man/serrsBayes.Rd |only serrsBayes-0.6-1/serrsBayes/DESCRIPTION | 11 ++-- serrsBayes-0.6-1/serrsBayes/MD5 | 30 +++++------ serrsBayes-0.6-1/serrsBayes/NAMESPACE | 28 ++++++----- serrsBayes-0.6-1/serrsBayes/NEWS.md | 15 +++++ serrsBayes-0.6-1/serrsBayes/R/serrsBayes.R | 5 - serrsBayes-0.6-1/serrsBayes/README.md | 8 +-- serrsBayes-0.6-1/serrsBayes/inst/CITATION | 38 ++++++++------- serrsBayes-0.6-1/serrsBayes/inst/doc/Introduction.html | 4 - serrsBayes-0.6-1/serrsBayes/inst/doc/Methanol.html | 12 ++-- serrsBayes-0.6-1/serrsBayes/man/figures |only serrsBayes-0.6-1/serrsBayes/man/lsTamra.Rd | 2 serrsBayes-0.6-1/serrsBayes/man/serrsBayes-package.Rd |only serrsBayes-0.6-1/serrsBayes/src/mixLorentz.cpp | 26 ++++++---- serrsBayes-0.6-1/serrsBayes/tests/testthat/testLorentz.R | 32 ++++++++++++ 16 files changed, 136 insertions(+), 75 deletions(-)
Title: Docorate (Decorate + Output) Displays
Description: A framework for creating production outputs. Users can frame a table, listing, or figure with headers and footers and save to an output file. Stores an intermediate 'docorator' object for reproducibility and rendering to multiple output types.
Author: Shannon Haughton [aut, cre],
Becca Krouse [aut],
Dragoș Moldovan-Gruenfeld [aut],
Seongbin Hong [ctb],
Dmytro Syzonenko [ctb],
GlaxoSmithKline Research & Development Limited [cph, fnd]
Maintainer: Shannon Haughton <shannon.l.haughton@gsk.com>
Diff between docorator versions 0.7.0 dated 2026-07-08 and 0.8.0 dated 2026-10-21
docorator-0.7.0/docorator/R/render.R |only docorator-0.7.0/docorator/tests/testthat/test-render.R |only docorator-0.8.0/docorator/DESCRIPTION | 23 docorator-0.8.0/docorator/MD5 | 44 - docorator-0.8.0/docorator/NAMESPACE | 8 docorator-0.8.0/docorator/NEWS.md | 11 docorator-0.8.0/docorator/R/docorate.R | 1 docorator-0.8.0/docorator/R/prep_obj_html.R |only docorator-0.8.0/docorator/R/render_html.R |only docorator-0.8.0/docorator/R/render_pdf.R |only docorator-0.8.0/docorator/R/render_rtf.R |only docorator-0.8.0/docorator/R/utils.R | 32 docorator-0.8.0/docorator/R/utils_fancyhdr.R | 70 + docorator-0.8.0/docorator/inst/doc/display_sizing.html | 440 +++++----- docorator-0.8.0/docorator/inst/template/template.Rmd | 1 docorator-0.8.0/docorator/inst/www |only docorator-0.8.0/docorator/man/hf_process.Rd | 10 docorator-0.8.0/docorator/man/prep_obj_html.Rd |only docorator-0.8.0/docorator/man/render_html.Rd |only docorator-0.8.0/docorator/man/render_pdf.Rd | 25 docorator-0.8.0/docorator/man/render_pdf_html.Rd |only docorator-0.8.0/docorator/man/render_pdf_latex.Rd |only docorator-0.8.0/docorator/man/render_rtf.Rd | 2 docorator-0.8.0/docorator/tests/testthat/_snaps/utils_fancyhdr.md | 7 docorator-0.8.0/docorator/tests/testthat/test-render_docx.R | 28 docorator-0.8.0/docorator/tests/testthat/test-render_html.R |only docorator-0.8.0/docorator/tests/testthat/test-render_pdf.R |only docorator-0.8.0/docorator/tests/testthat/test-render_rtf.R |only docorator-0.8.0/docorator/tests/testthat/test-utils_fancyhdr.R | 33 docorator-0.8.0/docorator/tests/testthat/test_docorate.R | 83 + 30 files changed, 534 insertions(+), 284 deletions(-)
Title: Tools for Calculating Allocations in Game Theory using Exact and
Approximated Methods
Description: The main objective of cooperative Transferable-Utility games (TU-games)
is to allocate a good among the agents involved. The package implements major
solution concepts including the Shapley value, Banzhaf value, and egalitarian
rules, alongside their extensions for structured games:
the Owen value and Banzhaf-Owen value for games with a priori unions, and the
Myerson value for communication games on networks. To address the inherent exponential
computational complexity of exact evaluation, the package offers both exact
algorithms and linear approximation methods based on sampling, enabling the
analysis of large-scale games. Additionally, it supports core set-based
solutions, allowing computation of the vertices and the centroid of the core.
Author: Maria D. Guillen [cre, aut] ,
Juan Carlos Goncalves [aut] ,
Jesus Camacho [aut]
Maintainer: Maria D. Guillen <maria.guilleng@umh.es>
Diff between TUvalues versions 1.1.1 dated 2026-02-09 and 1.2 dated 2026-10-21
DESCRIPTION | 20 + MD5 | 61 ++--- NAMESPACE | 2 R/banzhaf.R | 122 ++++------ R/banzhaf_appro.R | 209 +++++++++-------- R/banzhaf_exact.R | 116 ++++----- R/banzhaf_owen_appro.R | 287 +++++++++++++++-------- R/banzhaf_owen_exact.R | 75 +----- R/banzhan_owen.R | 111 ++++----- R/centroid.R | 33 +- R/checks.R |only R/coreVertex.R | 33 +- R/core_appro.R | 225 ++++++++---------- R/core_exact.R | 327 ++++++++++++++++++-------- R/egalitarian.R | 105 +++----- R/egalitarian_unions.R | 126 ++++------ R/equal_surplus_division.R | 122 ++++------ R/equal_surplus_division_unions.R | 295 +++++++++++------------- R/exact_by_blocks.R |only R/exact_unions.R |only R/myerson.R | 425 +++++++++++++++++++++-------------- R/myerson_unions.R | 64 ----- R/owen.R | 128 ++++------ R/owen_appro.R | 190 +++++++++------ R/owen_exact.R | 89 +------ R/shapley.R | 129 ++++------ R/shapley_appro.R | 176 +++++++------- R/shapley_exact.R | 113 +++++---- man/banzhaf_owen_exact.Rd | 2 man/centroid.Rd | 11 man/coreVertex.Rd | 11 man/core_exact.Rd | 19 + man/equal_surplus_division_unions.Rd | 2 33 files changed, 1894 insertions(+), 1734 deletions(-)
Title: Estimate Survival from Common Data Model Cohorts
Description: Estimate survival using data mapped to the Observational Medical Outcomes Partnership common data model. Survival can be estimated based on user-defined study cohorts.
Author: Kim Lopez-Gueell [aut, cre] ,
Edward Burn [aut] ,
Marti Catala [aut] ,
Xintong Li [aut] ,
Danielle Newby [aut] ,
Nuria Mercade-Besora [aut]
Maintainer: Kim Lopez-Gueell <kim.lopez@spc.ox.ac.uk>
Diff between CohortSurvival versions 1.2.0 dated 2026-10-01 and 1.2.1 dated 2026-10-21
DESCRIPTION | 14 MD5 | 18 NEWS.md | 5 R/addCohortSurvival.R | 43 build/vignette.rds |binary inst/doc/a00_Creating_cohorts_for_survival.html | 331 +++--- inst/doc/a01_Single_event_of_interest.html | 1261 ++++++++++++------------ inst/doc/a02_Competing_risk_survival.html | 229 ++-- inst/doc/a03_Further_survival_analyses.html | 55 - tests/testthat/test-outcomeHierarchy.R | 27 10 files changed, 1021 insertions(+), 962 deletions(-)
More information about CohortSurvival at CRAN
Permanent link
Title: Event Study Analysis
Description: Financial event study analysis. Implements the classical event
study methodology of MacKinlay (1997) <https://www.jstor.org/stable/2729691>
with multiple return models: market model, market adjusted, comparison
period mean adjusted, Fama and French three-factor (1993)
<doi:10.1016/0304-405X(93)90023-5> and five-factor (2015)
<doi:10.1016/j.jfineco.2014.10.010>, Carhart (1997) four-factor
<doi:10.1111/j.1540-6261.1997.tb03808.x>, generalized autoregressive
conditional heteroskedasticity (GARCH; Bollerslev, 1986)
<doi:10.1016/0304-4076(86)90063-1>, rolling window, and dynamic conditional
correlation GARCH (DCC-GARCH; Engle, 2002) <doi:10.1198/073500102288618487>.
Provides parametric and non-parametric test statistics, including the
standardized cross-sectional test of Boehmer, Musumeci and Poulsen (1991)
<doi:10.1016/0304-405X(91)90032-F> and its cross-correlation adjustment by
Kolari and Pynnonen (2010) <doi:10.1093/rfs/hhq072>; buy-and-ho [...truncated...]
Author: Simon Mueller [cre, aut]
Maintainer: Simon Mueller <sm@data-zoo.de>
This is a re-admission after prior archival of version 0.39.2 dated 2023-03-28
Diff between EventStudy versions 0.39.2 dated 2023-03-28 and 0.66.0 dated 2026-10-21
EventStudy-0.39.2/EventStudy/LICENSE |only EventStudy-0.39.2/EventStudy/R/AVCApplicationInput.R |only EventStudy-0.39.2/EventStudy/R/AVyCApplicationInput.R |only EventStudy-0.39.2/EventStudy/R/ApplicationInputInterface.R |only EventStudy-0.39.2/EventStudy/R/ArcApplicationInput.R |only EventStudy-0.39.2/EventStudy/R/EventStudy.R |only EventStudy-0.39.2/EventStudy/R/EventStudyAPI.R |only EventStudy-0.39.2/EventStudy/R/EventStudyAddin.R |only EventStudy-0.39.2/EventStudy/R/EventStudyApplicationInput.R |only EventStudy-0.39.2/EventStudy/R/ResultParser.R |only EventStudy-0.39.2/EventStudy/R/SP500Example.R |only EventStudy-0.39.2/EventStudy/R/Utils.R |only EventStudy-0.39.2/EventStudy/R/dataHandling.R |only EventStudy-0.39.2/EventStudy/R/requestHandling.R |only EventStudy-0.39.2/EventStudy/R/result_objects.R |only EventStudy-0.39.2/EventStudy/R/zzz.R |only EventStudy-0.39.2/EventStudy/README.md |only EventStudy-0.39.2/EventStudy/inst/doc/addin_eventstudy.R |only EventStudy-0.39.2/EventStudy/inst/doc/addin_eventstudy.Rmd |only EventStudy-0.39.2/EventStudy/inst/doc/addin_eventstudy.html |only EventStudy-0.39.2/EventStudy/inst/doc/get_started.R |only EventStudy-0.39.2/EventStudy/inst/doc/get_started.Rmd |only EventStudy-0.39.2/EventStudy/inst/doc/get_started.html |only EventStudy-0.39.2/EventStudy/inst/doc/howto_eventstudy.R |only EventStudy-0.39.2/EventStudy/inst/doc/howto_eventstudy.Rmd |only EventStudy-0.39.2/EventStudy/inst/doc/howto_eventstudy.html |only EventStudy-0.39.2/EventStudy/inst/doc/parameters.R |only EventStudy-0.39.2/EventStudy/inst/doc/parameters.Rmd |only EventStudy-0.39.2/EventStudy/inst/doc/parameters.html |only EventStudy-0.39.2/EventStudy/inst/doc/use_case_dieselgate.R |only EventStudy-0.39.2/EventStudy/inst/doc/use_case_dieselgate.Rmd |only EventStudy-0.39.2/EventStudy/inst/doc/use_case_dieselgate.html |only EventStudy-0.39.2/EventStudy/inst/extdata |only EventStudy-0.39.2/EventStudy/inst/rstudio |only EventStudy-0.39.2/EventStudy/man/ARCApplicationInput.Rd |only EventStudy-0.39.2/EventStudy/man/AVCApplicationInput.Rd |only EventStudy-0.39.2/EventStudy/man/AVyCApplicationInput.Rd |only EventStudy-0.39.2/EventStudy/man/ApplicationInputInterface.Rd |only EventStudy-0.39.2/EventStudy/man/CAAR-Results..Rd |only EventStudy-0.39.2/EventStudy/man/EventStudy.Rd |only EventStudy-0.39.2/EventStudy/man/EventStudyAPI.Rd |only EventStudy-0.39.2/EventStudy/man/EventStudyAddin.Rd |only EventStudy-0.39.2/EventStudy/man/EventStudyApplicationInput.Rd |only EventStudy-0.39.2/EventStudy/man/ResultParser.Rd |only EventStudy-0.39.2/EventStudy/man/aar_results.Rd |only EventStudy-0.39.2/EventStudy/man/checkClass.Rd |only EventStudy-0.39.2/EventStudy/man/checkDateFormat.Rd |only EventStudy-0.39.2/EventStudy/man/checkESTAPIError.Rd |only EventStudy-0.39.2/EventStudy/man/checkFile.Rd |only EventStudy-0.39.2/EventStudy/man/checkFiles.Rd |only EventStudy-0.39.2/EventStudy/man/doHttrRequest.Rd |only EventStudy-0.39.2/EventStudy/man/errorMessage.Rd |only EventStudy-0.39.2/EventStudy/man/estAPIKey.Rd |only EventStudy-0.39.2/EventStudy/man/getDefaultApplicationInput.Rd |only EventStudy-0.39.2/EventStudy/man/getSP500ExampleFiles.Rd |only EventStudy-0.39.2/EventStudy/man/isError.Rd |only EventStudy-0.39.2/EventStudy/man/myMessage.Rd |only EventStudy-0.39.2/EventStudy/man/reexports.Rd |only EventStudy-0.39.2/EventStudy/man/retryRequest.Rd |only EventStudy-0.39.2/EventStudy/vignettes/DieselGate.png |only EventStudy-0.39.2/EventStudy/vignettes/addin_eventstudy.Rmd |only EventStudy-0.39.2/EventStudy/vignettes/est_addin.png |only EventStudy-0.39.2/EventStudy/vignettes/get_started.Rmd |only EventStudy-0.39.2/EventStudy/vignettes/howto_eventstudy.Rmd |only EventStudy-0.39.2/EventStudy/vignettes/kable.css |only EventStudy-0.39.2/EventStudy/vignettes/landing_page.png |only EventStudy-0.39.2/EventStudy/vignettes/parameters.Rmd |only EventStudy-0.39.2/EventStudy/vignettes/start_addin.png |only EventStudy-0.39.2/EventStudy/vignettes/use_case_dieselgate.Rmd |only EventStudy-0.66.0/EventStudy/DESCRIPTION | 68 EventStudy-0.66.0/EventStudy/MD5 | 414 +++- EventStudy-0.66.0/EventStudy/NAMESPACE | 166 + EventStudy-0.66.0/EventStudy/NEWS.md | 927 ++++++++-- EventStudy-0.66.0/EventStudy/R/EventStudy-package.R |only EventStudy-0.66.0/EventStudy/R/advise.R |only EventStudy-0.66.0/EventStudy/R/advise_offline.R |only EventStudy-0.66.0/EventStudy/R/advisor_pro.R |only EventStudy-0.66.0/EventStudy/R/bootstrap.R |only EventStudy-0.66.0/EventStudy/R/contract.R |only EventStudy-0.66.0/EventStudy/R/cross_sectional.R |only EventStudy-0.66.0/EventStudy/R/data-dieselgate.R |only EventStudy-0.66.0/EventStudy/R/data-earnings-surprises.R |only EventStudy-0.66.0/EventStudy/R/data_download.R |only EventStudy-0.66.0/EventStudy/R/deprecation.R |only EventStudy-0.66.0/EventStudy/R/diagnostics.R |only EventStudy-0.66.0/EventStudy/R/es_diagnostics.R |only EventStudy-0.66.0/EventStudy/R/execute.R |only EventStudy-0.66.0/EventStudy/R/export.R |only EventStudy-0.66.0/EventStudy/R/inform.R |only EventStudy-0.66.0/EventStudy/R/knowledge_base.R |only EventStudy-0.66.0/EventStudy/R/models.R |only EventStudy-0.66.0/EventStudy/R/models_time_varying.R |only EventStudy-0.66.0/EventStudy/R/multi_event_test_statistics.R |only EventStudy-0.66.0/EventStudy/R/p_adjustment.R |only EventStudy-0.66.0/EventStudy/R/panel_event_study.R |only EventStudy-0.66.0/EventStudy/R/parameter_set.R |only EventStudy-0.66.0/EventStudy/R/plotting.R |only EventStudy-0.66.0/EventStudy/R/prepare_event_study.R |only EventStudy-0.66.0/EventStudy/R/provider.R |only EventStudy-0.66.0/EventStudy/R/report.R |only EventStudy-0.66.0/EventStudy/R/report_narrative.R |only EventStudy-0.66.0/EventStudy/R/return_calculation.R |only EventStudy-0.66.0/EventStudy/R/shape_contracts.R |only EventStudy-0.66.0/EventStudy/R/simulation.R |only EventStudy-0.66.0/EventStudy/R/single_event_test_statistics.R |only EventStudy-0.66.0/EventStudy/R/synthetic_control.R |only EventStudy-0.66.0/EventStudy/R/task.R |only EventStudy-0.66.0/EventStudy/R/task_intraday.R |only EventStudy-0.66.0/EventStudy/R/task_validation.R |only EventStudy-0.66.0/EventStudy/R/test_statistics_set.R |only EventStudy-0.66.0/EventStudy/R/theme.R |only EventStudy-0.66.0/EventStudy/build/vignette.rds |binary EventStudy-0.66.0/EventStudy/data |only EventStudy-0.66.0/EventStudy/inst/CITATION |only EventStudy-0.66.0/EventStudy/inst/doc/ai-advisor.R |only EventStudy-0.66.0/EventStudy/inst/doc/ai-advisor.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/ai-advisor.html |only EventStudy-0.66.0/EventStudy/inst/doc/automated-reports.R |only EventStudy-0.66.0/EventStudy/inst/doc/automated-reports.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/automated-reports.html |only EventStudy-0.66.0/EventStudy/inst/doc/cross-sectional-analysis.R |only EventStudy-0.66.0/EventStudy/inst/doc/cross-sectional-analysis.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/cross-sectional-analysis.html |only EventStudy-0.66.0/EventStudy/inst/doc/custom-models.R |only EventStudy-0.66.0/EventStudy/inst/doc/custom-models.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/custom-models.html |only EventStudy-0.66.0/EventStudy/inst/doc/custom-test-statistics.R |only EventStudy-0.66.0/EventStudy/inst/doc/custom-test-statistics.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/custom-test-statistics.html |only EventStudy-0.66.0/EventStudy/inst/doc/data-download.R |only EventStudy-0.66.0/EventStudy/inst/doc/data-download.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/data-download.html |only EventStudy-0.66.0/EventStudy/inst/doc/diagnostics-validation.R |only EventStudy-0.66.0/EventStudy/inst/doc/diagnostics-validation.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/diagnostics-validation.html |only EventStudy-0.66.0/EventStudy/inst/doc/factor-models-bhar.R |only EventStudy-0.66.0/EventStudy/inst/doc/factor-models-bhar.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/factor-models-bhar.html |only EventStudy-0.66.0/EventStudy/inst/doc/gallery.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/gallery.html |only EventStudy-0.66.0/EventStudy/inst/doc/inference-robustness.R |only EventStudy-0.66.0/EventStudy/inst/doc/inference-robustness.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/inference-robustness.html |only EventStudy-0.66.0/EventStudy/inst/doc/intraday-event-study.R |only EventStudy-0.66.0/EventStudy/inst/doc/intraday-event-study.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/intraday-event-study.html |only EventStudy-0.66.0/EventStudy/inst/doc/introduction.R |only EventStudy-0.66.0/EventStudy/inst/doc/introduction.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/introduction.html |only EventStudy-0.66.0/EventStudy/inst/doc/modern-did-estimators.R |only EventStudy-0.66.0/EventStudy/inst/doc/modern-did-estimators.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/modern-did-estimators.html |only EventStudy-0.66.0/EventStudy/inst/doc/panel-event-study.R |only EventStudy-0.66.0/EventStudy/inst/doc/panel-event-study.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/panel-event-study.html |only EventStudy-0.66.0/EventStudy/inst/doc/result-extraction.R |only EventStudy-0.66.0/EventStudy/inst/doc/result-extraction.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/result-extraction.html |only EventStudy-0.66.0/EventStudy/inst/doc/simulation-power-analysis.R |only EventStudy-0.66.0/EventStudy/inst/doc/simulation-power-analysis.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/simulation-power-analysis.html |only EventStudy-0.66.0/EventStudy/inst/doc/statistical-conventions.R |only EventStudy-0.66.0/EventStudy/inst/doc/statistical-conventions.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/statistical-conventions.html |only EventStudy-0.66.0/EventStudy/inst/doc/synthetic-control.R |only EventStudy-0.66.0/EventStudy/inst/doc/synthetic-control.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/synthetic-control.html |only EventStudy-0.66.0/EventStudy/inst/doc/time-varying-models.R |only EventStudy-0.66.0/EventStudy/inst/doc/time-varying-models.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/time-varying-models.html |only EventStudy-0.66.0/EventStudy/inst/doc/volume-volatility-event-study.R |only EventStudy-0.66.0/EventStudy/inst/doc/volume-volatility-event-study.Rmd |only EventStudy-0.66.0/EventStudy/inst/doc/volume-volatility-event-study.html |only EventStudy-0.66.0/EventStudy/inst/rmarkdown |only EventStudy-0.66.0/EventStudy/man/ARTTest.Rd |only EventStudy-0.66.0/EventStudy/man/AnthropicProvider.Rd |only EventStudy-0.66.0/EventStudy/man/BHARModel.Rd |only EventStudy-0.66.0/EventStudy/man/BHARTTest.Rd |only EventStudy-0.66.0/EventStudy/man/BMPTest.Rd |only EventStudy-0.66.0/EventStudy/man/CARTTest.Rd |only EventStudy-0.66.0/EventStudy/man/CSectTTest.Rd |only EventStudy-0.66.0/EventStudy/man/CalendarTimePortfolioTest.Rd |only EventStudy-0.66.0/EventStudy/man/Carhart4FactorModel.Rd |only EventStudy-0.66.0/EventStudy/man/ComparisonPeriodMeanAdjustedModel.Rd |only EventStudy-0.66.0/EventStudy/man/CustomProvider.Rd |only EventStudy-0.66.0/EventStudy/man/DCCGARCHModel.Rd |only EventStudy-0.66.0/EventStudy/man/EVENTSTUDY_KB.Rd |only EventStudy-0.66.0/EventStudy/man/EventStudy-package.Rd |only EventStudy-0.66.0/EventStudy/man/EventStudyTask.Rd |only EventStudy-0.66.0/EventStudy/man/FamaFrench3FactorModel.Rd |only EventStudy-0.66.0/EventStudy/man/FamaFrench5FactorModel.Rd |only EventStudy-0.66.0/EventStudy/man/GARCHModel.Rd |only EventStudy-0.66.0/EventStudy/man/GeneralizedSignTest.Rd |only EventStudy-0.66.0/EventStudy/man/IntradayEventStudyTask.Rd |only EventStudy-0.66.0/EventStudy/man/KolariPynnonenTest.Rd |only EventStudy-0.66.0/EventStudy/man/LinearFactorModel.Rd |only EventStudy-0.66.0/EventStudy/man/LogReturn.Rd |only EventStudy-0.66.0/EventStudy/man/MarketAdjustedModel.Rd |only EventStudy-0.66.0/EventStudy/man/MarketModel.Rd |only EventStudy-0.66.0/EventStudy/man/ModelBase.Rd |only EventStudy-0.66.0/EventStudy/man/MultiEventStatisticsSet.Rd |only EventStudy-0.66.0/EventStudy/man/OpenAICompatProvider.Rd |only EventStudy-0.66.0/EventStudy/man/PanelEventStudyTask.Rd |only EventStudy-0.66.0/EventStudy/man/ParameterSet.Rd |only EventStudy-0.66.0/EventStudy/man/PatellZTest.Rd |only EventStudy-0.66.0/EventStudy/man/ProviderBase.Rd |only EventStudy-0.66.0/EventStudy/man/RankTest.Rd |only EventStudy-0.66.0/EventStudy/man/ReturnCalculation.Rd |only EventStudy-0.66.0/EventStudy/man/RollingWindowModel.Rd |only EventStudy-0.66.0/EventStudy/man/SignTest.Rd |only EventStudy-0.66.0/EventStudy/man/SimpleReturn.Rd |only EventStudy-0.66.0/EventStudy/man/SingleEventStatisticsSet.Rd |only EventStudy-0.66.0/EventStudy/man/StatisticsSetBase.Rd |only EventStudy-0.66.0/EventStudy/man/SyntheticControlTask.Rd |only EventStudy-0.66.0/EventStudy/man/TestStatisticBase.Rd |only EventStudy-0.66.0/EventStudy/man/VolatilityModel.Rd |only EventStudy-0.66.0/EventStudy/man/VolumeModel.Rd |only EventStudy-0.66.0/EventStudy/man/adjust_p_values.Rd |only EventStudy-0.66.0/EventStudy/man/advisor_pro.Rd |only EventStudy-0.66.0/EventStudy/man/bootstrap_test.Rd |only EventStudy-0.66.0/EventStudy/man/calculate_statistics.Rd |only EventStudy-0.66.0/EventStudy/man/car_by_group.Rd |only EventStudy-0.66.0/EventStudy/man/car_quantiles.Rd |only EventStudy-0.66.0/EventStudy/man/cross_sectional_regression.Rd |only EventStudy-0.66.0/EventStudy/man/degenerate-input-contract.Rd |only EventStudy-0.66.0/EventStudy/man/dieselgate.Rd |only EventStudy-0.66.0/EventStudy/man/download_factor_data.Rd |only EventStudy-0.66.0/EventStudy/man/download_risk_free_rate.Rd |only EventStudy-0.66.0/EventStudy/man/download_stock_data.Rd |only EventStudy-0.66.0/EventStudy/man/earnings_surprises.Rd |only EventStudy-0.66.0/EventStudy/man/es_advise.Rd |only EventStudy-0.66.0/EventStudy/man/es_colours.Rd |only EventStudy-0.66.0/EventStudy/man/es_diagnostics.Rd |only EventStudy-0.66.0/EventStudy/man/es_kb.Rd |only EventStudy-0.66.0/EventStudy/man/es_report.Rd |only EventStudy-0.66.0/EventStudy/man/estimate_panel_event_study.Rd |only EventStudy-0.66.0/EventStudy/man/estimate_synthetic_control.Rd |only EventStudy-0.66.0/EventStudy/man/eventstudy-deprecation.Rd |only EventStudy-0.66.0/EventStudy/man/eventstudy-shape-contracts.Rd |only EventStudy-0.66.0/EventStudy/man/export_results.Rd |only EventStudy-0.66.0/EventStudy/man/figures |only EventStudy-0.66.0/EventStudy/man/fit_model.Rd |only EventStudy-0.66.0/EventStudy/man/flag_robustness.Rd |only EventStudy-0.66.0/EventStudy/man/format.Advice.Rd |only EventStudy-0.66.0/EventStudy/man/format.EventStudySummary.Rd |only EventStudy-0.66.0/EventStudy/man/format.es_advice.Rd |only EventStudy-0.66.0/EventStudy/man/format.es_cross_sectional.Rd |only EventStudy-0.66.0/EventStudy/man/format.es_diagnostics.Rd |only EventStudy-0.66.0/EventStudy/man/format.es_simulation.Rd |only EventStudy-0.66.0/EventStudy/man/generate_report.Rd |only EventStudy-0.66.0/EventStudy/man/model_diagnostics.Rd |only EventStudy-0.66.0/EventStudy/man/nonparametric_intraday_test.Rd |only EventStudy-0.66.0/EventStudy/man/plot_car_distribution.Rd |only EventStudy-0.66.0/EventStudy/man/plot_diagnostics.Rd |only EventStudy-0.66.0/EventStudy/man/plot_event_study.Rd |only EventStudy-0.66.0/EventStudy/man/plot_panel_event_study.Rd |only EventStudy-0.66.0/EventStudy/man/plot_stocks.Rd |only EventStudy-0.66.0/EventStudy/man/plot_synthetic_control.Rd |only EventStudy-0.66.0/EventStudy/man/prepare_event_study.Rd |only EventStudy-0.66.0/EventStudy/man/prepare_intraday_event_study.Rd |only EventStudy-0.66.0/EventStudy/man/pretrend_test.Rd |only EventStudy-0.66.0/EventStudy/man/print.Advice.Rd |only EventStudy-0.66.0/EventStudy/man/print.EventStudySummary.Rd |only EventStudy-0.66.0/EventStudy/man/print.es_advice.Rd |only EventStudy-0.66.0/EventStudy/man/print.es_cross_sectional.Rd |only EventStudy-0.66.0/EventStudy/man/print.es_diagnostics.Rd |only EventStudy-0.66.0/EventStudy/man/provider.Rd |only EventStudy-0.66.0/EventStudy/man/recommend_stat.Rd |only EventStudy-0.66.0/EventStudy/man/report_table.Rd |only EventStudy-0.66.0/EventStudy/man/run_event_study.Rd |only EventStudy-0.66.0/EventStudy/man/sc_placebo_test.Rd |only EventStudy-0.66.0/EventStudy/man/simulate_event_study.Rd |only EventStudy-0.66.0/EventStudy/man/theme_eventstudy.Rd |only EventStudy-0.66.0/EventStudy/man/tidy.EventStudyTask.Rd |only EventStudy-0.66.0/EventStudy/man/validate_task.Rd |only EventStudy-0.66.0/EventStudy/tests |only EventStudy-0.66.0/EventStudy/vignettes/ai-advisor.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/automated-reports.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/cross-sectional-analysis.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/custom-models.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/custom-test-statistics.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/data-download.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/diagnostics-validation.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/factor-models-bhar.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/gallery.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/inference-robustness.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/intraday-event-study.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/introduction.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/modern-did-estimators.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/panel-event-study.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/result-extraction.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/simulation-power-analysis.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/statistical-conventions.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/synthetic-control.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/time-varying-models.Rmd |only EventStudy-0.66.0/EventStudy/vignettes/volume-volatility-event-study.Rmd |only 296 files changed, 1319 insertions(+), 256 deletions(-)
Title: Estimate Vaccine Effectiveness Based on Different Study Designs
Description: Provides tools for estimating vaccine effectiveness and
related metrics. The 'vaccineff_data' class manages key features for
preparing, visualizing, and organizing cohort data, as well as
estimating vaccine effectiveness. The results and model performance
are assessed using the 'vaccineff' class.
Author: David Santiago Quevedo [aut] ,
Zulma M. Cucunuba [aut] ,
International Development Research Center [fnd] ,
Geraldine Gomez Millan [ctb] ,
Pratik Gupte [ctb] ,
Erika J Cantor [ctb] ,
Santiago Loaiza [ctb] ,
Jaime Pavlich-Mariscal [ctb, cre] ,
Hugo Gr [...truncated...]
Maintainer: Jaime Pavlich-Mariscal <jpavlich@javeriana.edu.co>
Diff between vaccineff versions 1.0.3 dated 2026-07-29 and 1.0.4 dated 2026-10-21
DESCRIPTION | 8 ++-- MD5 | 6 +-- NEWS.md | 6 +++ tests/testthat/test-coh_match_utils.R | 62 ++++++++++++++++++++++++++++++---- 4 files changed, 69 insertions(+), 13 deletions(-)
Title: Fast Full-Text Search for R with 'Tantivy'
Description: Index data frames and document collections and run fast full-text
search entirely on your machine. 'tantivyr' wraps the 'Tantivy' 'Rust' search
engine (a 'Lucene'-inspired library) to provide 'BM25' ranking, structured
filters, snippet highlighting and incremental updates over an on-disk or
in-memory index. First-class support is provided for stemming and stop words
in Portuguese and English, making it well suited to public documents, news
clippings, extracted 'PDF' text, transcripts and legal acts.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Julia Nascimento Barreto [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between tantivyr versions 0.1.1 dated 2026-09-22 and 0.1.3 dated 2026-10-21
DESCRIPTION | 37 ++++--- MD5 | 26 ++--- NEWS.md | 14 ++ R/extendr-wrappers.R | 2 inst/doc/portuguese-text.html | 12 +- inst/doc/tantivyr.html | 20 +-- man/tantivy_version.Rd | 2 man/tantivyr-package.Rd | 13 +- src/Makevars.in | 14 ++ src/rust/Cargo.lock | 215 +++++++++++++++++++++++++++++------------- src/rust/Cargo.toml | 4 src/rust/src/lib.rs | 2 src/rust/src/schema.rs | 2 src/rust/vendor.tar.xz |binary 14 files changed, 246 insertions(+), 117 deletions(-)
Title: Estimates and Plots Single-Level and Multilevel Latent Class
Models
Description: Efficiently estimates single- and multilevel latent class models with covariates, allowing for output visualization in all specifications. For more technical details, see Lyrvall et al. (2025) <doi:10.1080/00273171.2025.2473935>.
Author: Roberto Di Mari [aut, cre],
Johan Lyrvall [aut],
Zsuzsa Bakk [ctb],
Jennifer Oser [ctb],
Jouni Kuha [ctb]
Maintainer: Roberto Di Mari <roberto.dimari@unict.it>
Diff between multilevLCA versions 2.1.6 dated 2026-09-18 and 2.1.7 dated 2026-10-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- build/partial.rdb |binary src/LCAfit.cpp | 40 +++++++++++++++++++++------------------- 4 files changed, 28 insertions(+), 26 deletions(-)
Title: Baseline Functions for Actigraphy and Activity Processing and
Analysis
Description: Provides baseline functions for actigraphy and activity data.
This package is intended to be extended by downstream overlays such as
'actiread', 'actimetrics', and 'stepcount'.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between actibase versions 0.6.0 dated 2026-09-17 and 0.8.0 dated 2026-10-21
actibase-0.6.0/actibase/man/flag_qc.Rd |only actibase-0.6.0/actibase/man/flag_spike.Rd |only actibase-0.8.0/actibase/DESCRIPTION | 11 actibase-0.8.0/actibase/MD5 | 91 actibase-0.8.0/actibase/NAMESPACE | 28 actibase-0.8.0/actibase/NEWS.md | 49 actibase-0.8.0/actibase/R/aaa_utils.R | 56 actibase-0.8.0/actibase/R/acti_fill_zeros.R | 58 actibase-0.8.0/actibase/R/acti_resample.R | 77 actibase-0.8.0/actibase/R/acti_standardize_epoch.R |only actibase-0.8.0/actibase/R/create_day_inclusion.R | 45 actibase-0.8.0/actibase/R/flag_spike.R | 983 ++++++---- actibase-0.8.0/actibase/R/get_sample_rate.R | 18 actibase-0.8.0/actibase/R/mark_condition.R | 18 actibase-0.8.0/actibase/R/tidy_axes.R | 60 actibase-0.8.0/actibase/R/time_to_minute.R | 22 actibase-0.8.0/actibase/README.md | 68 actibase-0.8.0/actibase/build |only actibase-0.8.0/actibase/inst |only actibase-0.8.0/actibase/man/acti_day_index.Rd | 10 actibase-0.8.0/actibase/man/acti_day_start.Rd | 12 actibase-0.8.0/actibase/man/acti_fill_zeros.Rd | 20 actibase-0.8.0/actibase/man/acti_flag_adjacent_invalid_periods.Rd |only actibase-0.8.0/actibase/man/acti_flag_cdc_labels.Rd |only actibase-0.8.0/actibase/man/acti_flag_contiguous_device_limit_runs.Rd |only actibase-0.8.0/actibase/man/acti_flag_device_limit_windows.Rd |only actibase-0.8.0/actibase/man/acti_flag_qc.Rd |only actibase-0.8.0/actibase/man/acti_flag_repeated_samples.Rd |only actibase-0.8.0/actibase/man/acti_flag_spike.Rd |only actibase-0.8.0/actibase/man/acti_hms_to_minute.Rd | 8 actibase-0.8.0/actibase/man/acti_minute_to_hms.Rd | 8 actibase-0.8.0/actibase/man/acti_repeat_time_of_day.Rd | 10 actibase-0.8.0/actibase/man/acti_resample.Rd | 20 actibase-0.8.0/actibase/man/acti_separate_time.Rd | 4 actibase-0.8.0/actibase/man/acti_split_intervals_at_midnight.Rd | 6 actibase-0.8.0/actibase/man/acti_standardize_data.Rd | 20 actibase-0.8.0/actibase/man/acti_standardize_epoch.Rd |only actibase-0.8.0/actibase/man/acti_tidy_axes.Rd | 6 actibase-0.8.0/actibase/man/acti_time_of_day.Rd | 8 actibase-0.8.0/actibase/man/acti_time_to_minute.Rd | 10 actibase-0.8.0/actibase/man/as_convert_safe.Rd | 6 actibase-0.8.0/actibase/man/create_day_inclusion.Rd | 10 actibase-0.8.0/actibase/man/get_dynamic_range.Rd | 4 actibase-0.8.0/actibase/man/get_sample_rate.Rd | 4 actibase-0.8.0/actibase/man/get_transformations.Rd | 8 actibase-0.8.0/actibase/man/is.AccData.Rd | 4 actibase-0.8.0/actibase/man/strip_hour_shift.Rd | 2 actibase-0.8.0/actibase/tests/testthat/test-baseline.R | 188 + actibase-0.8.0/actibase/tests/testthat/test-flag-helpers.R | 255 ++ actibase-0.8.0/actibase/tests/testthat/test-new-helpers.R | 11 actibase-0.8.0/actibase/tests/testthat/test-standardize-epoch.R |only actibase-0.8.0/actibase/tests/testthat/test-time-to-minute.R | 51 actibase-0.8.0/actibase/vignettes |only 53 files changed, 1646 insertions(+), 623 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-19 2.1-0
2020-09-22 2.0-9
2020-03-09 2.0-8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-09-18 1.2.0
2026-06-30 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-03 1.0.1
More information about tampaBayOpenData at CRAN
Permanent link
Title: Functional Time Series Analysis
Description: Functions for visualizing, modeling, forecasting and hypothesis testing of functional time series.
Author: Rob Hyndman [aut] ,
Han Lin Shang [aut, cre, cph]
Maintainer: Han Lin Shang <hanlin.shang@mq.edu.au>
Diff between ftsa versions 6.7 dated 2026-03-31 and 6.8 dated 2026-10-21
ChangeLog | 15 +++- DESCRIPTION | 14 +-- MD5 | 125 ++++++++++++++++++---------------- NAMESPACE | 6 + R/CoDa_BayesNW.R | 4 - R/CoDa_FPCA.R | 4 - R/CoDa_NFR.R | 11 +- R/CoDa_recon.R | 11 +- R/ELW.R |only R/ELW2S.R |only R/H_estimate_LW_NFTS.R |only R/Horta_Ziegelmann_FPCA.R | 6 + R/LQDT_FPCA.R | 2 R/MFDM.R | 7 + R/PHI_lw.R |only R/R.lw.R |only R/R.lw.hc.R |only R/R.lw.tapered.R |only R/as_flag.R |only R/cos_bell.R |only R/cos_bell_cmplx.R |only R/extract.R | 2 R/fdiff.R |only R/ftsmweightselect.R | 12 +-- R/local.W.R |only R/plsrPIs.R | 2 R/super_fun.R | 6 - man/CoDa_BayesNW.Rd | 8 +- man/CoDa_FPCA.Rd | 6 - man/ER_GR.Rd | 4 - man/GAEVforecast.Rd | 14 +-- man/H_estimate_LW_NFTS.Rd |only man/Horta_Ziegelmann_FPCA.Rd | 12 +-- man/LQDT_FPCA.Rd | 6 - man/MFDM.Rd | 16 +++- man/T_stationary.Rd | 2 man/centre.Rd | 14 +-- man/diff.fts.Rd | 2 man/dynamic_FLR.Rd | 14 +-- man/dynupdate.Rd | 10 +- man/error.Rd | 6 - man/extract.Rd | 10 +- man/fbootstrap.Rd | 2 man/forecast.ftsm.Rd | 12 +-- man/forecastfplsr.Rd | 8 +- man/fplsr.Rd | 22 ++--- man/ftsa-package.Rd | 26 +++---- man/ftsm.Rd | 14 +-- man/ftsmiterativeforecasts.Rd | 2 man/ftsmweightselect.Rd | 15 ++-- man/is.fts.Rd | 3 man/isfe.fts.Rd | 7 + man/long_run_covariance_estimation.Rd | 6 - man/mean.fts.Rd | 6 + man/median.fts.Rd | 8 +- man/pcscorebootstrapdata.Rd | 12 +-- man/plot.fm.Rd | 4 - man/plot.fmres.Rd | 60 ++++++++-------- man/plot.ftsf.Rd | 122 ++++++++++++++++----------------- man/plot.ftsm.Rd | 102 ++++++++++++++------------- man/pm_10_GR.Rd | 20 ++--- man/quantile.Rd | 9 +- man/sd.Rd | 52 +++++++------- man/sd.fts.Rd | 8 +- man/sim_FARMA.Rd | 2 man/skew_t_fun.Rd | 2 man/stop_time_detect.Rd | 11 ++ man/stop_time_sim_data.Rd | 2 man/var.Rd | 44 +++++------ man/var.fts.Rd | 8 +- 70 files changed, 508 insertions(+), 432 deletions(-)
Title: Score Comparability for Translated and Adapted Exams
Description: An adaptation-comparability workflow for small, lower-scoring
and unbalanced language groups where standard differential item
functioning (DIF) tools (Magis, Beland, Tuerlinckx and De Boeck, 2010,
<doi:10.3758/BRM.42.3.847>) break down. Calibrates the Rasch model in
each language group, links the groups robustly through the densest
cluster of items rather than assuming DIF cancels out (on anchor
selection see Kopf, Zeileis and Strobl, 2015,
<doi:10.1177/0013164414529792>), detects small-sample DIF with an
empirical-Bayes spike-and-slab model and local false discovery rates
(Efron, 2004, <doi:10.1198/016214504000000089>), quantifies whether
item-level DIF accumulates into different pass rates, explains DIF by
item features to give translators actionable guidance, and drafts a
comparability report.
Author: Daniel Edi [aut, cre, cph]
Maintainer: Daniel Edi <danieledi2026@gmail.com>
Diff between transDIF versions 0.1.0 dated 2026-10-08 and 0.2.0 dated 2026-10-20
DESCRIPTION | 6 LICENSE | 4 MD5 | 46 ++-- NAMESPACE | 22 +- NEWS.md | 14 + R/calibrate.R | 168 +++++++-------- R/dif.R | 456 +++++++++++++++++++++--------------------- R/impact.R | 449 ++++++++++++++++++++++------------------- R/sensitivity.R |only R/simulate.R | 100 ++++----- README.md | 75 ++++-- inst/doc/transDIF.R | 21 + inst/doc/transDIF.Rmd | 227 ++++++++++++++------ inst/doc/transDIF.html | 153 +++++++++++++- inst/validation/known_truth.R | 156 +++++++------- man/td_calibrate.Rd | 70 +++--- man/td_dif.Rd | 150 +++++++------ man/td_features.Rd | 62 ++--- man/td_impact.Rd | 78 +++---- man/td_mh.Rd | 62 ++--- man/td_report.Rd | 93 ++++---- man/td_sensitivity.Rd |only man/td_simulate.Rd | 102 ++++----- tests/test-core.R | 161 ++++++++------ vignettes/transDIF.Rmd | 227 ++++++++++++++------ 25 files changed, 1677 insertions(+), 1225 deletions(-)
Title: Extract, Analyze and Visualize Mutational Signatures for Genomic
Variations
Description: Genomic alterations including single nucleotide substitution,
copy number alteration, etc. are the major force for cancer
initialization and development. Due to the specificity of molecular
lesions caused by genomic alterations, we can generate characteristic
alteration spectra, called 'signature' (Wang, Shixiang, et al. (2021)
<DOI:10.1371/journal.pgen.1009557> & Alexandrov, Ludmil B., et al.
(2020) <DOI:10.1038/s41586-020-1943-3> & Steele Christopher D., et al.
(2022) <DOI:10.1038/s41586-022-04738-6>). This package helps users to
extract, analyze and visualize signatures from genomic alteration
records, thus providing new insight into cancer study.
Author: Shixiang Wang [aut, cre] ,
Ziyu Tao [aut] ,
Huimin Li [aut] ,
Tao Wu [aut] ,
Xue-Song Liu [aut, ctb] ,
Anand Mayakonda [ctb]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between sigminer versions 2.3.3 dated 2026-09-26 and 2.4.0 dated 2026-10-20
sigminer-2.3.3/sigminer/inst/extdata/human_hg19_gene_info.rds |only sigminer-2.4.0/sigminer/DESCRIPTION | 6 sigminer-2.4.0/sigminer/MD5 | 52 +- sigminer-2.4.0/sigminer/NAMESPACE | 1 sigminer-2.4.0/sigminer/NEWS.md | 41 + sigminer-2.4.0/sigminer/R/best_practice.R | 79 +++ sigminer-2.4.0/sigminer/R/bp_k_arbitration.R |only sigminer-2.4.0/sigminer/R/bp_k_survey.R |only sigminer-2.4.0/sigminer/R/rust_backend.R |only sigminer-2.4.0/sigminer/R/sig_estimate.R | 59 ++ sigminer-2.4.0/sigminer/R/sig_extract.R | 52 ++ sigminer-2.4.0/sigminer/R/sig_fit.R | 39 + sigminer-2.4.0/sigminer/R/sig_fit_bootstrap.R | 2 sigminer-2.4.0/sigminer/R/sig_fit_bootstrap_batch.R | 4 sigminer-2.4.0/sigminer/R/sig_fit_refit.R |only sigminer-2.4.0/sigminer/R/sigprofiler.R | 216 +++++++--- sigminer-2.4.0/sigminer/build/partial.rdb |binary sigminer-2.4.0/sigminer/build/vignette.rds |binary sigminer-2.4.0/sigminer/inst/doc/cnsignature.html | 158 +++---- sigminer-2.4.0/sigminer/inst/doc/sigminer.R | 24 - sigminer-2.4.0/sigminer/inst/doc/sigminer.html | 31 - sigminer-2.4.0/sigminer/man/bp.Rd | 24 + sigminer-2.4.0/sigminer/man/bp_select_k.Rd |only sigminer-2.4.0/sigminer/man/show_sig_bootstrap.Rd | 2 sigminer-2.4.0/sigminer/man/sig_estimate.Rd | 12 sigminer-2.4.0/sigminer/man/sig_extract.Rd | 12 sigminer-2.4.0/sigminer/man/sig_fit.Rd | 29 + sigminer-2.4.0/sigminer/man/sig_fit_bootstrap.Rd | 12 sigminer-2.4.0/sigminer/man/sig_fit_bootstrap_batch.Rd | 2 sigminer-2.4.0/sigminer/man/sigprofiler.Rd | 3 30 files changed, 646 insertions(+), 214 deletions(-)
Title: Qualitative Analysis with Large Language Models
Description: Tools for AI-assisted qualitative data coding using large language
models ('LLMs') via the 'ellmer' package, supporting providers including
'OpenAI', 'Anthropic', 'Google', 'Azure', and local models via 'Ollama'.
Provides a 'codebook'-based workflow for defining coding instructions and
applying them to texts, images, audio recordings, and other data, with
optional transcription of audio and translation of texts before coding
through 'DeepL', 'Google', 'Qwen-MT', or a chat model. Includes built-in 'codebooks'
for common applications such as sentiment analysis and policy coding, and
functions for creating custom 'codebooks' for specific research questions.
Supports systematic replication across models and settings, computing
inter-coder reliability statistics including Krippendorff's alpha
(Krippendorff 2019, <doi:10.4135/9781071878781>) and Fleiss' kappa
(Fleiss 1971, <doi:10.1037/h0031619>), as well as gold-standard validation
metrics including accuracy, precision, recall, [...truncated...]
Author: Seraphine F. Maerz [aut, cre] ,
Kenneth Benoit [aut]
Maintainer: Seraphine F. Maerz <seraphine.maerz@unimelb.edu.au>
Diff between quallmer versions 0.5.0 dated 2026-09-29 and 0.6.0 dated 2026-10-20
quallmer-0.5.0/quallmer/tests/testthat/_problems/test-providers-230.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-providers-240.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-providers-241.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-providers-283.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-providers-323.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-providers-330.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-providers-377.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_code-1675.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_code-1691.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_code-1724.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_code-1758.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_code-1785.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_code-1806.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_code_json-1067.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_code_json-579.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_code_json-580.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_code_json-581.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_code_json-645.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_segment-339.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_segment-392.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-qlm_segment-405.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-turn_records-372.R |only quallmer-0.5.0/quallmer/tests/testthat/_problems/test-turn_records-396.R |only quallmer-0.6.0/quallmer/DESCRIPTION | 20 +- quallmer-0.6.0/quallmer/MD5 | 88 +++++----- quallmer-0.6.0/quallmer/NAMESPACE | 11 + quallmer-0.6.0/quallmer/NEWS.md | 19 ++ quallmer-0.6.0/quallmer/R/corpus.qlm_coded.R |only quallmer-0.6.0/quallmer/R/qlm_code.R | 39 +++- quallmer-0.6.0/quallmer/R/qlm_replicate.R | 6 quallmer-0.6.0/quallmer/R/qlm_trail.R | 4 quallmer-0.6.0/quallmer/R/qlm_transcribe.R | 7 quallmer-0.6.0/quallmer/R/qlm_translate.R |only quallmer-0.6.0/quallmer/R/qlm_translation.R |only quallmer-0.6.0/quallmer/R/translate_adapters.R |only quallmer-0.6.0/quallmer/R/translate_chat.R |only quallmer-0.6.0/quallmer/R/translate_google.R |only quallmer-0.6.0/quallmer/R/translate_qwen.R |only quallmer-0.6.0/quallmer/R/translation_corpus.R |only quallmer-0.6.0/quallmer/R/translation_languages.R |only quallmer-0.6.0/quallmer/R/translation_plan.R |only quallmer-0.6.0/quallmer/R/translation_run.R |only quallmer-0.6.0/quallmer/README.md | 45 +++-- quallmer-0.6.0/quallmer/build/partial.rdb |binary quallmer-0.6.0/quallmer/build/vignette.rds |binary quallmer-0.6.0/quallmer/inst/doc/getting-started.html | 5 quallmer-0.6.0/quallmer/man/as.character.qlm_translation.Rd |only quallmer-0.6.0/quallmer/man/c.qlm_translation.Rd |only quallmer-0.6.0/quallmer/man/corpus.qlm_coded.Rd |only quallmer-0.6.0/quallmer/man/inputs.Rd | 5 quallmer-0.6.0/quallmer/man/names-set-.qlm_translation.Rd |only quallmer-0.6.0/quallmer/man/print.qlm_translation.Rd |only quallmer-0.6.0/quallmer/man/qlm_code.Rd | 4 quallmer-0.6.0/quallmer/man/qlm_translate.Rd |only quallmer-0.6.0/quallmer/man/quallmer-package.Rd | 2 quallmer-0.6.0/quallmer/man/sub-.qlm_translation.Rd |only quallmer-0.6.0/quallmer/man/sub-subset-.qlm_translation.Rd |only quallmer-0.6.0/quallmer/man/subset-.qlm_translation.Rd |only quallmer-0.6.0/quallmer/tests/testthat/_problems/test-qlm_code-298.R |only quallmer-0.6.0/quallmer/tests/testthat/_problems/test-qlm_code-299.R |only quallmer-0.6.0/quallmer/tests/testthat/_problems/test-qlm_segment-272.R |only quallmer-0.6.0/quallmer/tests/testthat/_problems/test-qlm_segment-273.R |only quallmer-0.6.0/quallmer/tests/testthat/helper-translations.R |only quallmer-0.6.0/quallmer/tests/testthat/test-corpus.R | 30 +-- quallmer-0.6.0/quallmer/tests/testthat/test-corpus.qlm_coded.R |only quallmer-0.6.0/quallmer/tests/testthat/test-qlm_translate-live.R |only quallmer-0.6.0/quallmer/tests/testthat/test-qlm_translate.R |only quallmer-0.6.0/quallmer/tests/testthat/test-qlm_translation.R |only quallmer-0.6.0/quallmer/tests/testthat/test-translate_adapters.R |only quallmer-0.6.0/quallmer/tests/testthat/test-translate_google.R |only quallmer-0.6.0/quallmer/tests/testthat/test-translate_qwen.R |only quallmer-0.6.0/quallmer/tests/testthat/test-translation_corpus.R |only quallmer-0.6.0/quallmer/tests/testthat/test-translation_languages.R |only quallmer-0.6.0/quallmer/tests/testthat/test-translation_plan.R |only 74 files changed, 192 insertions(+), 93 deletions(-)
Title: Decision Accuracy and Consistency for Rater-Mediated Exams
Description: Answers "would this candidate have passed with a different set
of raters?" for rater-mediated exams such as oral examinations,
objective structured clinical examinations and essay scoring. Builds on
the many-facet extension of the rating scale model (Andrich, 1978,
<doi:10.1007/BF02293814>) to compute counterfactual pass probabilities
under the observed, an average-severity and a random rater panel, under
an explicit decision rule (raw total, fair average or measure), and
splits expected misclassification into measurement error and rater
assignment, extending item response theory classification accuracy
(Lee, 2010, <doi:10.1111/j.1745-3984.2009.00096.x>) to rater effects.
Supports panels in which every rater scores every task and designs in
which each case is scored by a different examiner, with rating
categories or continuous scores such as 0-100 (through a linear
many-facet model). Models can be fitted with 'TAM' or built-in
estimators.
Author: Daniel Edi [aut, cre, cph]
Maintainer: Daniel Edi <danieledi2026@gmail.com>
Diff between decisionfacets versions 0.1.0 dated 2026-10-07 and 0.2.0 dated 2026-10-20
DESCRIPTION | 14 - LICENSE | 2 MD5 | 56 ++--- NAMESPACE | 28 +- NEWS.md | 38 ++- R/attribute.R | 240 +++++++++++---------- R/counterfactual.R | 412 +++++++++++++++++++++---------------- R/data.R | 95 +++++--- R/decision.R | 228 ++++++++++++-------- R/fit.R | 382 ++++++++++++++++++++-------------- R/model.R | 170 ++++++++------- R/oral_exam.R |only R/simulate.R | 162 ++++++++++---- README.md | 247 ++++++++++++++-------- data |only inst/doc/decisionfacets.R | 20 + inst/doc/decisionfacets.Rmd | 233 ++++++++++++-------- inst/doc/decisionfacets.html | 77 ++++++ inst/validation/assignment_study.R |only inst/validation/mvp_recovery.R | 134 ++++++------ man/df_attribute.Rd | 108 ++++----- man/df_classify.Rd | 48 ++-- man/df_counterfactual.Rd | 170 ++++++++------- man/df_cut.Rd | 80 ++++--- man/df_data.Rd | 70 ++++-- man/df_fit.Rd | 105 +++++---- man/df_rater_effects.Rd | 44 +-- man/df_simulate.Rd | 130 +++++++---- man/oral_exam.Rd |only tests/test-core.R | 246 +++++++++++++--------- vignettes/decisionfacets.Rmd | 233 ++++++++++++-------- 31 files changed, 2269 insertions(+), 1503 deletions(-)
More information about decisionfacets at CRAN
Permanent link
Title: Geometric Analysis of Configurations in High-Dimensional Spaces
Description: Computes Average Membership Degree (AMD) from soft-membership
matrices and constructs AMD curves across candidate configuration counts.
The current curve backend uses repeated fuzzy c-means fits while keeping
the AMD definition, membership estimation, curve construction, and final
assignment as separate operations. Fitted memberships, convergence
diagnostics, preprocessing transformations, seeds, row maps, and
process-level reproducibility links are retained. The package reports
numerical curve features but leaves their scientific interpretation to an
explicitly justified analysis. The method was introduced by Mendoza and
Araújo (2022) <doi:10.1111/ecog.06289>.
Author: Manuel Mendoza [aut, cre]
Maintainer: Manuel Mendoza <mmendoza@mncn.csic.es>
Diff between AMDconfigurations versions 0.2.1 dated 2026-10-12 and 0.4.0 dated 2026-10-20
DESCRIPTION | 6 MD5 | 31 ++--- NEWS.md | 35 +++++ R/amd_predictor.R | 159 +++++++++++++++++--------- R/amd_reliability.R |only README.md | 136 +++++++++++----------- inst/CITATION | 2 inst/COPYRIGHTS | 6 inst/MIGRATION.md | 75 ++++++------ inst/READER_EVIDENCE.txt |only inst/doc/AMDconfigurations.R | 2 inst/doc/AMDconfigurations.Rmd | 49 +++++--- inst/doc/AMDconfigurations.html | 65 ++++++---- man/load_amd_predictor.Rd | 8 - man/predict_amd.Rd | 50 +++++--- tests/testthat/test_predict_amd_integration.R | 53 +++++++- tests/testthat/test_reference_reliability.R |only vignettes/AMDconfigurations.Rmd | 49 +++++--- 18 files changed, 457 insertions(+), 269 deletions(-)
More information about AMDconfigurations at CRAN
Permanent link
Title: Beautiful Regression Tables for Modern Econometrics Packages
Description: Produces publication-quality LaTeX, ASCII, and HTML regression
tables. Designed as a drop-in replacement for the 'stargazer' package
for 'lm' and 'glm' models, with added native support for 'fixest',
'plm', and 'alpaca' objects including automatic fixed-effect and
random-effect indicator rows and SE-type detection. Standard errors can
be supplied as variance-covariance matrices, numeric vectors, or
auto-extracted from supported model objects. Follows the interface of
Hlavac (2022) <https://CRAN.R-project.org/package=stargazer>.
Author: Tom Zylkin [aut, cre]
Maintainer: Tom Zylkin <tzylkin@richmond.edu>
Diff between stargazer2 versions 0.1.0 dated 2026-07-17 and 0.1.1 dated 2026-10-20
DESCRIPTION | 8 - MD5 | 20 ++-- NEWS.md | 19 ++++ R/format_table.R | 13 +-- R/stargazer.R | 7 + R/summary_table.R | 167 ++++++++++++++++++++++++++++++++++++++++ inst/doc/getting-started.html | 8 - inst/doc/modern-estimators.html | 4 inst/doc/plm-panel-data.html | 2 man/format_table.Rd | 3 man/stargazer.Rd | 5 + 11 files changed, 227 insertions(+), 29 deletions(-)
Title: Calibrating Generated Items Before Pretesting with Predicted
Priors
Description: Predicts Rasch item difficulty from item features (text
embeddings from any model, template family, content metadata) by ridge
regression (Hoerl and Kennard, 1970, <doi:10.1080/00401706.1970.10488634>)
with honest out-of-sample uncertainty, uses the predictions as robust
informative priors to calibrate new items from small pretest samples,
in the spirit of using collateral information in calibration (Mislevy,
Sheehan and Wingersky, 1993, <doi:10.1111/j.1745-3984.1993.tb00422.x>),
plans the pretest sample size needed for a target precision, and
diagnoses item families whose predictions cannot be trusted.
Author: Daniel Edi [aut, cre, cph]
Maintainer: Daniel Edi <danieledi2026@gmail.com>
Diff between coldstart versions 0.1.0 dated 2026-10-07 and 0.2.0 dated 2026-10-20
DESCRIPTION | 6 LICENSE | 4 MD5 | 51 +++--- NAMESPACE | 22 +- NEWS.md | 26 ++- R/calibrate.R | 158 ++++++++++---------- R/check.R | 172 ++++++++++++---------- R/plan.R | 74 ++++----- R/predict.R | 265 +++++++++++++++++++---------------- R/simulate.R | 150 +++++++++---------- README.md | 187 +++++++++++++----------- inst/doc/coldstart.R | 17 ++ inst/doc/coldstart.Rmd | 210 +++++++++++++++++---------- inst/doc/coldstart.html | 67 +++++++- inst/validation/condition_analysis.R |only inst/validation/condition_study.R |only inst/validation/known_truth.R | 124 ++++++++-------- inst/validation/replication_study.R |only man/cs_calibrate.Rd | 109 +++++++------- man/cs_check.Rd | 86 ++++++----- man/cs_distrust.Rd | 82 +++++----- man/cs_plan.Rd | 68 ++++---- man/cs_predictor.Rd | 100 ++++++------- man/cs_responses.Rd | 58 +++---- man/cs_simulate.Rd | 106 +++++++------- man/predict.cs_predictor.Rd | 70 ++++----- tests/test-core.R | 140 ++++++++++-------- vignettes/coldstart.Rmd | 210 +++++++++++++++++---------- 28 files changed, 1417 insertions(+), 1145 deletions(-)
Title: Respondent-Driven Sampling
Description: Provides functionality for carrying out estimation
with data collected using Respondent-Driven Sampling. This includes
Heckathorn's RDS-I and RDS-II estimators as well as Gile's Sequential
Sampling estimator. The package is part of the "RDS Analyst" suite of
packages for the analysis of respondent-driven sampling data.
See Gile and Handcock (2010) <doi:10.1111/j.1467-9531.2010.01223.x>,
Gile and Handcock (2015) <doi:10.1111/rssa.12091> and
Gile, Beaudry, Handcock and Ott (2018) <doi:10.1146/annurev-statistics-031017-100704>.
Author: Mark S. Handcock [aut, cre] ,
Krista J. Gile [aut],
Ian E. Fellows [aut],
W. Whipple Neely [ctb]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between RDS versions 0.9-10 dated 2024-09-06 and 0.9-11 dated 2026-10-20
RDS-0.9-10/RDS/man/transition.counts.to.Markov.mle.Rd |only RDS-0.9-11/RDS/DESCRIPTION | 15 RDS-0.9-11/RDS/MD5 | 171 ++-- RDS-0.9-11/RDS/NAMESPACE | 4 RDS-0.9-11/RDS/R/LRT.trend.R | 2 RDS-0.9-11/RDS/R/MA.util.R | 162 +-- RDS-0.9-11/RDS/R/RDS.compare.proportions.R | 23 RDS-0.9-11/RDS/R/bgk_kde.R | 15 RDS-0.9-11/RDS/R/bootstrap-intervals.R | 491 +++--------- RDS-0.9-11/RDS/R/bootstrap-mechanics.R |only RDS-0.9-11/RDS/R/bootstrap.contingency.test.R | 29 RDS-0.9-11/RDS/R/control.rds.estimates.R | 20 RDS-0.9-11/RDS/R/data-export.R | 12 RDS-0.9-11/RDS/R/differential-activity.R | 42 - RDS-0.9-11/RDS/R/estimate-plots.R | 2 RDS-0.9-11/RDS/R/estimate-utils.R | 133 --- RDS-0.9-11/RDS/R/excluded-level.R |only RDS-0.9-11/RDS/R/gile-bootstrap.R | 75 + RDS-0.9-11/RDS/R/gile-ss-util.R | 10 RDS-0.9-11/RDS/R/hcg-bootstrap.R | 63 - RDS-0.9-11/RDS/R/hcg-util.R | 112 +- RDS-0.9-11/RDS/R/homophily.R | 12 RDS-0.9-11/RDS/R/impute-degree.R | 20 RDS-0.9-11/RDS/R/incidence.R | 10 RDS-0.9-11/RDS/R/llmeC.R | 66 - RDS-0.9-11/RDS/R/me.impute.R | 19 RDS-0.9-11/RDS/R/rds-HCG.R | 28 RDS-0.9-11/RDS/R/rds-I.R | 28 RDS-0.9-11/RDS/R/rds-II.R | 26 RDS-0.9-11/RDS/R/rds-ss.R | 24 RDS-0.9-11/RDS/R/rds.data.frame-plots.R | 30 RDS-0.9-11/RDS/R/rds.data.frame-utils.R | 2 RDS-0.9-11/RDS/R/rds.data.frame.R | 21 RDS-0.9-11/RDS/R/rds.estimates.local.R | 175 ---- RDS-0.9-11/RDS/R/rds.interval.estimate.R | 11 RDS-0.9-11/RDS/R/rds.weighted.estimate-class.R | 24 RDS-0.9-11/RDS/R/replicate-weights.R | 19 RDS-0.9-11/RDS/R/salganik-bootstrap.R | 23 RDS-0.9-11/RDS/R/treeboot.R | 14 RDS-0.9-11/RDS/R/utils.R | 68 - RDS-0.9-11/RDS/R/weights.R | 163 ++- RDS-0.9-11/RDS/R/wtd.stats.R | 40 RDS-0.9-11/RDS/build/partial.rdb |binary RDS-0.9-11/RDS/man/LRT.trend.test.Rd | 2 RDS-0.9-11/RDS/man/RDS.HCG.estimates.Rd | 21 RDS-0.9-11/RDS/man/RDS.I.estimates.Rd | 22 RDS-0.9-11/RDS/man/RDS.II.estimates.Rd | 29 RDS-0.9-11/RDS/man/RDS.SS.estimates.Rd | 22 RDS-0.9-11/RDS/man/RDS.bootstrap.intervals.Rd | 12 RDS-0.9-11/RDS/man/RDS.bootstrap.mechanics.Rd |only RDS-0.9-11/RDS/man/RDS.compare.two.proportions.Rd | 3 RDS-0.9-11/RDS/man/as.rds.data.frame.Rd | 2 RDS-0.9-11/RDS/man/bootstrap.contingency.test.Rd | 4 RDS-0.9-11/RDS/man/bootstrap.incidence.Rd | 6 RDS-0.9-11/RDS/man/compute.weights.Rd | 19 RDS-0.9-11/RDS/man/control.rds.estimates.Rd | 19 RDS-0.9-11/RDS/man/export.rds.interval.estimate.Rd | 4 RDS-0.9-11/RDS/man/hcg.replicate.weights.Rd | 8 RDS-0.9-11/RDS/man/hcg.weights.Rd | 13 RDS-0.9-11/RDS/man/homophily.estimates.Rd | 3 RDS-0.9-11/RDS/man/rds.I.weights.Rd | 8 RDS-0.9-11/RDS/man/rds.interval.estimate.Rd | 4 RDS-0.9-11/RDS/man/rid.from.coupons.Rd | 2 RDS-0.9-11/RDS/src/bsC.c | 15 RDS-0.9-11/RDS/src/dpoilog.c | 14 RDS-0.9-11/RDS/src/getinclCstacked.c | 19 RDS-0.9-11/RDS/src/llmeC.c | 44 - RDS-0.9-11/RDS/tests/testthat/test-bootstrap-agreement.R |only RDS-0.9-11/RDS/tests/testthat/test-bootstrap-intervals.R |only RDS-0.9-11/RDS/tests/testthat/test-compare-proportions.R |only RDS-0.9-11/RDS/tests/testthat/test-compute-weights-subset.R |only RDS-0.9-11/RDS/tests/testthat/test-deg-out-map.R |only RDS-0.9-11/RDS/tests/testthat/test-differential-activity.R | 39 RDS-0.9-11/RDS/tests/testthat/test-estimators.R | 10 RDS-0.9-11/RDS/tests/testthat/test-excluded-bootstrap.R |only RDS-0.9-11/RDS/tests/testthat/test-excluded-level.R |only RDS-0.9-11/RDS/tests/testthat/test-gile-bootstrap.R |only RDS-0.9-11/RDS/tests/testthat/test-gile-ss.R |only RDS-0.9-11/RDS/tests/testthat/test-hcg-bootstrap.R |only RDS-0.9-11/RDS/tests/testthat/test-hcg-weights.R |only RDS-0.9-11/RDS/tests/testthat/test-homophily.R | 16 RDS-0.9-11/RDS/tests/testthat/test-impute-degree.R |only RDS-0.9-11/RDS/tests/testthat/test-incidence-roworder.R |only RDS-0.9-11/RDS/tests/testthat/test-level-order.R |only RDS-0.9-11/RDS/tests/testthat/test-me-cmp-scale.R |only RDS-0.9-11/RDS/tests/testthat/test-me-optimism.R |only RDS-0.9-11/RDS/tests/testthat/test-me-recruit-time.R |only RDS-0.9-11/RDS/tests/testthat/test-me-seed-placeholder.R |only RDS-0.9-11/RDS/tests/testthat/test-notes-attr.R |only RDS-0.9-11/RDS/tests/testthat/test-rds-II.R | 2 RDS-0.9-11/RDS/tests/testthat/test-rds-index-time.R |only RDS-0.9-11/RDS/tests/testthat/test-rds-mc.R | 6 RDS-0.9-11/RDS/tests/testthat/test-rds-ss.R | 14 RDS-0.9-11/RDS/tests/testthat/test-rds-subset.R |only RDS-0.9-11/RDS/tests/testthat/test-recruits-plot.R |only RDS-0.9-11/RDS/tests/testthat/test-reingold-plot.R |only RDS-0.9-11/RDS/tests/testthat/test-rid-from-coupons.R |only RDS-0.9-11/RDS/tests/testthat/test-row-order.R |only RDS-0.9-11/RDS/tests/testthat/test-salganik-bootstrap.R |only RDS-0.9-11/RDS/tests/testthat/test-summary-me.R |only RDS-0.9-11/RDS/tests/testthat/test-treeboot-continuous.R |only RDS-0.9-11/RDS/tests/testthat/test-write-default-file.R |only RDS-0.9-11/RDS/tests/testthat/test-write-graphviz.R |only RDS-0.9-11/RDS/tests/testthat/test-wtd-quantile.R |only 104 files changed, 1168 insertions(+), 1418 deletions(-)
Title: Ab Initio Uncertainty Quantification
Description: Uncertainty quantification and inverse estimation by probabilistic generative models from the beginning of the data analysis. An example is a Fourier basis method for inverse estimation in scattering analysis of microscopy videos. It does not require specifying a certain range of Fourier bases and it substantially reduces computational cost via the generalized Schur algorithm. See the reference: Mengyang Gu, Yue He, Xubo Liu and Yimin Luo (2023), <doi:10.48550/arXiv.2309.02468>, and Tong Lin, Jinseok Lee, Matt Helgeson, Megan T Valentine, Yimin Luo, Mengyang Gu (2026), <doi:10.48550/arXiv.2605.29424>.
Author: Yue He [aut],
Xubo Liu [aut],
Tong Lin [aut],
Mengyang Gu [aut, cre]
Maintainer: Mengyang Gu <mengyang@pstat.ucsb.edu>
Diff between AIUQ versions 0.5.5 dated 2026-06-10 and 0.5.6 dated 2026-10-20
CHANGELOG | 6 DESCRIPTION | 8 MD5 | 39 +- NAMESPACE | 10 R/SAM.R | 12 R/SAM_model_free_workflow.R | 16 + R/functions.R | 593 +++++++++++++++++++++++++++++++++++++++++--- R/structure.R | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/AIUQ.R | 19 - inst/doc/AIUQ.Rmd | 19 - inst/doc/AIUQ.html | 43 +-- man/AIUQ-package.Rd | 3 man/SAM-class.Rd | 8 man/SAM.Rd | 49 --- man/calculate_ISF.Rd |only man/l2_fixedAB.Rd | 7 man/plot_ISF.Rd |only man/plot_MSD.Rd | 7 man/plot_moduli.Rd |only vignettes/AIUQ.Rmd | 19 - 22 files changed, 714 insertions(+), 150 deletions(-)
Title: Sumerian Cuneiform Text Analysis
Description: Provides functions for converting transliterated Sumerian texts to sign names and cuneiform characters,
creating and querying dictionaries, analyzing the structure of
Sumerian words, and creating translations. Includes a built-in dictionary and supports both
forward lookup (Sumerian to English) and reverse lookup (English to
Sumerian).
Author: Robin Wellmann [aut, cre]
Maintainer: Robin Wellmann <ro.wellmann@gmail.com>
Diff between sumer versions 1.6.0 dated 2026-05-05 and 1.7.0 dated 2026-10-20
sumer-1.6.0/sumer/inst/extdata/project/lines/Line_31.txt |only sumer-1.7.0/sumer/DESCRIPTION | 11 sumer-1.7.0/sumer/MD5 | 143 sumer-1.7.0/sumer/NAMESPACE | 1 sumer-1.7.0/sumer/R/add_brackets.R | 32 sumer-1.7.0/sumer/R/aggregate_dictionary.R |only sumer-1.7.0/sumer/R/as.cuneiform.R | 16 sumer-1.7.0/sumer/R/as.sign_name.R | 13 sumer-1.7.0/sumer/R/classify.R |only sumer-1.7.0/sumer/R/compose_skeleton_entry.R | 3 sumer-1.7.0/sumer/R/convert_to_dictionary.R | 10 sumer-1.7.0/sumer/R/eval_operator.R | 33 sumer-1.7.0/sumer/R/grammar_probs.R | 165 sumer-1.7.0/sumer/R/info.R | 20 sumer-1.7.0/sumer/R/look_up.R | 23 sumer-1.7.0/sumer/R/mark_ngrams.R | 19 sumer-1.7.0/sumer/R/merge_dictionaries.R | 6 sumer-1.7.0/sumer/R/merge_similar_entries.R |only sumer-1.7.0/sumer/R/plot_sign_grammar.R | 133 sumer-1.7.0/sumer/R/prior_probs.R | 122 sumer-1.7.0/sumer/R/save_dictionary.R | 33 sumer-1.7.0/sumer/R/sign_grammar.R | 128 sumer-1.7.0/sumer/R/standardize_signs.R | 68 sumer-1.7.0/sumer/R/translate.R | 54 sumer-1.7.0/sumer/R/translate_line.R | 4 sumer-1.7.0/sumer/R/translation_context.R | 37 sumer-1.7.0/sumer/inst/doc/getting-started.R | 85 sumer-1.7.0/sumer/inst/doc/getting-started.Rmd | 153 sumer-1.7.0/sumer/inst/doc/getting-started.html | 783 - sumer-1.7.0/sumer/inst/doc/translating-texts.R | 5 sumer-1.7.0/sumer/inst/doc/translating-texts.Rmd | 22 sumer-1.7.0/sumer/inst/doc/translating-texts.html | 86 sumer-1.7.0/sumer/inst/extdata/etcsl_mapping.txt | 2 sumer-1.7.0/sumer/inst/extdata/project/Readme.txt |only sumer-1.7.0/sumer/inst/extdata/project/lines/Line_1.txt | 27 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_10.txt | 48 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_11.txt | 32 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_12.txt | 29 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_13.txt | 22 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_14.txt | 42 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_15.txt | 28 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_16.txt | 10 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_17.txt | 46 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_18.txt | 20 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_19.txt | 20 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_2.txt | 41 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_20.txt | 41 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_21.txt | 37 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_22.txt | 33 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_23.txt | 20 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_24.txt | 24 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_25.txt | 21 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_26.txt | 27 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_28.txt | 43 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_29.txt | 40 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_3.txt | 43 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_30.txt | 46 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_4.txt | 31 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_5.txt | 27 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_6.txt | 12 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_7.txt | 22 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_8.txt | 36 sumer-1.7.0/sumer/inst/extdata/project/lines/Line_9.txt | 37 sumer-1.7.0/sumer/inst/extdata/sign_grammar.txt |only sumer-1.7.0/sumer/inst/extdata/sumer-dictionary.txt |10736 +++++++++++++-- sumer-1.7.0/sumer/man/classify.Rd |only sumer-1.7.0/sumer/man/fill_substr_info.Rd | 3 sumer-1.7.0/sumer/man/grammar_probs.Rd | 143 sumer-1.7.0/sumer/man/look_up.Rd | 14 sumer-1.7.0/sumer/man/plot_sign_grammar.Rd | 167 sumer-1.7.0/sumer/man/prior_probs.Rd | 114 sumer-1.7.0/sumer/man/sign_grammar.Rd | 139 sumer-1.7.0/sumer/man/translate.Rd | 10 sumer-1.7.0/sumer/man/translate_line.Rd | 7 sumer-1.7.0/sumer/vignettes/getting-started.Rmd | 153 sumer-1.7.0/sumer/vignettes/translating-texts.Rmd | 22 76 files changed, 11916 insertions(+), 2707 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, biplot, scatter plot, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.3.1 dated 2026-10-12 and 2.3.2 dated 2026-10-20
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- R/Cluster.R | 22 ---------------------- R/IM.R | 43 +++++++++++++++++++------------------------ R/transf.data.R |only man/MVar.pt-package.Rd | 4 ++-- man/transf.data.Rd |only 7 files changed, 31 insertions(+), 56 deletions(-)
Title: Multivariate Analysis
Description: Multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, biplot, scatter plot, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.3.1 dated 2026-10-12 and 2.3.2 dated 2026-10-20
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- R/Cluster_English.R | 22 ---------------------- R/IM_English.R | 29 ++++++++++++----------------- R/transf.data.R |only man/MVar-package.Rd | 4 ++-- man/transf.data_English.Rd |only 7 files changed, 24 insertions(+), 49 deletions(-)
Title: Machine Learning
Description: Machine learning, containing several algorithms for supervised and unsupervised classification, in addition to a function that plots the Receiver Operating Characteristic (ROC) and Precision-Recall (PRC) curve graphs, and also a function that returns several metrics used for model evaluation, the latter can be used in ranking results from other packs.
Author: Paulo Cesar Ossani [aut, cre]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Kira versions 1.0.9 dated 2026-10-12 and 1.1.0 dated 2026-10-20
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/IM.R | 39 +++++++++++++++++++-------------------- R/results.R | 23 ++++++++++++----------- R/transf.data.R | 43 +++++++++++++++++++++++++++---------------- man/Kira-package.Rd | 4 ++-- 6 files changed, 69 insertions(+), 58 deletions(-)
Title: Client for the Ifo Institute Time Series
Description: Download ifo business survey data and more time series from
ifo institute <https://www.ifo.de/en/ifo-time-series>.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between ifo versions 0.3.0 dated 2026-09-19 and 0.3.1 dated 2026-10-20
DESCRIPTION | 8 ++-- MD5 | 10 ++--- NEWS.md | 4 ++ R/ifo.R | 73 ++++++++++++++++---------------------- man/figures/README-plotting-1.png |binary tests/testthat/test-ifo.R | 26 +++++++------ 6 files changed, 58 insertions(+), 63 deletions(-)
Title: 'GGML' Tensor Operations for Machine Learning
Description: Provides 'R' bindings to the 'GGML' tensor library for machine
learning, optimized for 'Vulkan' GPU acceleration with a transparent CPU
fallback. The package features a 'Keras'-like sequential API and a
'PyTorch'-style 'autograd' engine for building, training, and deploying
neural networks. Key capabilities include high-performance 5D tensor
operations, 'f16' precision, and efficient quantization. It supports
native 'ONNX' model import (50+ operators) and 'GGUF' weight loading
from the 'llama.cpp' and 'Hugging Face' ecosystems. Designed for
zero-overhead inference via dedicated weight buffering, it integrates
seamlessly as a 'parsnip' engine for 'tidymodels' and provides
first-class learners for the 'mlr3' framework.
See <https://github.com/ggml-org/ggml> for more information about the
underlying library.
Author: Yuri Baramykov [aut, cre] ,
Georgi Gerganov [ctb, cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
Mozilla Foundation [ctb, cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between ggmlR versions 0.8.4 dated 2026-08-21 and 0.8.8 dated 2026-10-20
ggmlR-0.8.4/ggmlR/inst/examples/tp_p2p_backtrace.sh |only ggmlR-0.8.4/ggmlR/src/onnx/rel_pos_bias.c |only ggmlR-0.8.8/ggmlR/DESCRIPTION | 6 ggmlR-0.8.8/ggmlR/MD5 | 609 - ggmlR-0.8.8/ggmlR/NAMESPACE | 60 ggmlR-0.8.8/ggmlR/NEWS.md | 34 ggmlR-0.8.8/ggmlR/R/ag_backward_graph.R |only ggmlR-0.8.8/ggmlR/R/ag_buffer.R |only ggmlR-0.8.8/ggmlR/R/ag_capture.R |only ggmlR-0.8.8/ggmlR/R/ag_checkpoint.R |only ggmlR-0.8.8/ggmlR/R/ag_defer.R |only ggmlR-0.8.8/ggmlR/R/ag_device.R | 1703 +++ ggmlR-0.8.8/ggmlR/R/ag_flash_attn.R |only ggmlR-0.8.8/ggmlR/R/ag_fwd_profile.R |only ggmlR-0.8.8/ggmlR/R/ag_handle.R |only ggmlR-0.8.8/ggmlR/R/ag_layers.R | 110 ggmlR-0.8.8/ggmlR/R/ag_memory_budget.R |only ggmlR-0.8.8/ggmlR/R/ag_save.R | 127 ggmlR-0.8.8/ggmlR/R/ag_select.R |only ggmlR-0.8.8/ggmlR/R/ag_tape_memory.R |only ggmlR-0.8.8/ggmlR/R/ag_trace.R |only ggmlR-0.8.8/ggmlR/R/ag_training.R | 73 ggmlR-0.8.8/ggmlR/R/ag_xfer.R |only ggmlR-0.8.8/ggmlR/R/autograd.R | 1315 ++ ggmlR-0.8.8/ggmlR/R/fit_generator.R |only ggmlR-0.8.8/ggmlR/R/graph.R | 32 ggmlR-0.8.8/ggmlR/R/memory.R | 23 ggmlR-0.8.8/ggmlR/R/nn_functional.R | 557 - ggmlR-0.8.8/ggmlR/R/nn_layers.R | 797 + ggmlR-0.8.8/ggmlR/R/nn_model.R | 703 + ggmlR-0.8.8/ggmlR/R/onnx.R | 68 ggmlR-0.8.8/ggmlR/R/operations.R | 176 ggmlR-0.8.8/ggmlR/R/optimizer.R | 86 ggmlR-0.8.8/ggmlR/R/sc_umap.R | 10 ggmlR-0.8.8/ggmlR/R/scheduler.R | 7 ggmlR-0.8.8/ggmlR/R/trainer.R |only ggmlR-0.8.8/ggmlR/R/zzz.R | 18 ggmlR-0.8.8/ggmlR/README.md | 798 + ggmlR-0.8.8/ggmlR/cleanup | 10 ggmlR-0.8.8/ggmlR/inst/doc/autograd-engine.R | 44 ggmlR-0.8.8/ggmlR/inst/doc/autograd-engine.Rmd | 125 ggmlR-0.8.8/ggmlR/inst/doc/autograd-engine.html | 140 ggmlR-0.8.8/ggmlR/inst/doc/data-parallel-training.R | 8 ggmlR-0.8.8/ggmlR/inst/doc/data-parallel-training.Rmd | 8 ggmlR-0.8.8/ggmlR/inst/doc/data-parallel-training.html | 10 ggmlR-0.8.8/ggmlR/inst/doc/gpu-vulkan.R | 5 ggmlR-0.8.8/ggmlR/inst/doc/gpu-vulkan.Rmd | 14 ggmlR-0.8.8/ggmlR/inst/doc/gpu-vulkan.html | 11 ggmlR-0.8.8/ggmlR/inst/doc/keras-like-api.R | 11 ggmlR-0.8.8/ggmlR/inst/doc/keras-like-api.Rmd | 11 ggmlR-0.8.8/ggmlR/inst/doc/keras-like-api.html | 21 ggmlR-0.8.8/ggmlR/inst/docs |only ggmlR-0.8.8/ggmlR/inst/examples/benchmark_coopmat.R | 64 ggmlR-0.8.8/ggmlR/inst/examples/benchmark_onnx.R | 55 ggmlR-0.8.8/ggmlR/inst/examples/diag_arch_roundtrip.R |only ggmlR-0.8.8/ggmlR/inst/examples/diag_onnx_maskrcnn_cpu.R |only ggmlR-0.8.8/ggmlR/inst/examples/profile_onnx_cpu.R |only ggmlR-0.8.8/ggmlR/inst/examples/profile_onnx_maskrcnn_gpu.R |only ggmlR-0.8.8/ggmlR/inst/examples/profile_onnx_shaders.R |only ggmlR-0.8.8/ggmlR/inst/examples/proto_transformer_gaps.R |only ggmlR-0.8.8/ggmlR/inst/examples/repro_ring.R |only ggmlR-0.8.8/ggmlR/inst/examples/test_all_onnx.R | 29 ggmlR-0.8.8/ggmlR/inst/examples/test_onnx_gpu.R |only ggmlR-0.8.8/ggmlR/man/ag_argmax.Rd |only ggmlR-0.8.8/ggmlR/man/ag_backward_fallbacks.Rd |only ggmlR-0.8.8/ggmlR/man/ag_backward_graph.Rd |only ggmlR-0.8.8/ggmlR/man/ag_backward_profile.Rd |only ggmlR-0.8.8/ggmlR/man/ag_backward_resident.Rd |only ggmlR-0.8.8/ggmlR/man/ag_buffer.Rd |only ggmlR-0.8.8/ggmlR/man/ag_capture.Rd |only ggmlR-0.8.8/ggmlR/man/ag_capture_free.Rd |only ggmlR-0.8.8/ggmlR/man/ag_capture_set.Rd |only ggmlR-0.8.8/ggmlR/man/ag_capture_step.Rd |only ggmlR-0.8.8/ggmlR/man/ag_checkpoint.Rd |only ggmlR-0.8.8/ggmlR/man/ag_concat_rows.Rd |only ggmlR-0.8.8/ggmlR/man/ag_defer_forward.Rd |only ggmlR-0.8.8/ggmlR/man/ag_device.Rd | 5 ggmlR-0.8.8/ggmlR/man/ag_dtype.Rd | 5 ggmlR-0.8.8/ggmlR/man/ag_estimate_training_memory.Rd |only ggmlR-0.8.8/ggmlR/man/ag_flash_attention.Rd |only ggmlR-0.8.8/ggmlR/man/ag_forward_profile.Rd |only ggmlR-0.8.8/ggmlR/man/ag_gather.Rd |only ggmlR-0.8.8/ggmlR/man/ag_get_rows.Rd |only ggmlR-0.8.8/ggmlR/man/ag_grad.Rd |only ggmlR-0.8.8/ggmlR/man/ag_graph_mode.Rd |only ggmlR-0.8.8/ggmlR/man/ag_launch_count.Rd |only ggmlR-0.8.8/ggmlR/man/ag_linear.Rd | 28 ggmlR-0.8.8/ggmlR/man/ag_load_state_dict.Rd |only ggmlR-0.8.8/ggmlR/man/ag_local_mode.Rd |only ggmlR-0.8.8/ggmlR/man/ag_log_softmax.Rd |only ggmlR-0.8.8/ggmlR/man/ag_matmul_precision.Rd |only ggmlR-0.8.8/ggmlR/man/ag_max.Rd |only ggmlR-0.8.8/ggmlR/man/ag_multihead_attention.Rd | 45 ggmlR-0.8.8/ggmlR/man/ag_sample_categorical.Rd |only ggmlR-0.8.8/ggmlR/man/ag_sample_normal.Rd |only ggmlR-0.8.8/ggmlR/man/ag_slice_rows.Rd |only ggmlR-0.8.8/ggmlR/man/ag_state_dict.Rd |only ggmlR-0.8.8/ggmlR/man/ag_tape_memory.Rd |only ggmlR-0.8.8/ggmlR/man/ag_trace_data.Rd |only ggmlR-0.8.8/ggmlR/man/ag_trace_data_report.Rd |only ggmlR-0.8.8/ggmlR/man/ag_xfer_count.Rd |only ggmlR-0.8.8/ggmlR/man/ag_xfer_report.Rd |only ggmlR-0.8.8/ggmlR/man/as.matrix.ag_tensor.Rd |only ggmlR-0.8.8/ggmlR/man/check_grad_anomaly.Rd | 3 ggmlR-0.8.8/ggmlR/man/clip_grad_norm.Rd | 3 ggmlR-0.8.8/ggmlR/man/clip_grad_value.Rd | 3 ggmlR-0.8.8/ggmlR/man/ggml_attention.Rd | 11 ggmlR-0.8.8/ggmlR/man/ggml_backend_sched_get_tensor_backend.Rd | 8 ggmlR-0.8.8/ggmlR/man/ggml_backend_tensor_set_data.Rd | 7 ggmlR-0.8.8/ggmlR/man/ggml_compile.Rd | 23 ggmlR-0.8.8/ggmlR/man/ggml_fit.Rd | 19 ggmlR-0.8.8/ggmlR/man/ggml_fit_generator.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_fit_opt.Rd | 16 ggmlR-0.8.8/ggmlR/man/ggml_fit_opt_gen.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_fit_opt_multi.Rd | 11 ggmlR-0.8.8/ggmlR/man/ggml_flash_attn_back.Rd | 38 ggmlR-0.8.8/ggmlR/man/ggml_freeze_bn_stats.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_freeze_weights.Rd | 18 ggmlR-0.8.8/ggmlR/man/ggml_gelu_back.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_layer_attention.Rd | 35 ggmlR-0.8.8/ggmlR/man/ggml_layer_embedding.Rd | 31 ggmlR-0.8.8/ggmlR/man/ggml_layer_layer_norm.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_layer_permute.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_layer_positional_embedding.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_layer_reshape.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_layer_rms_norm.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_layer_sequence_pooling.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_layer_transformer_block.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_norm_back.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_opt_alloc.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_context_optimizer_type.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_dataset_data.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_dataset_free.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_dataset_get_batch.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_dataset_get_batch_head.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_dataset_init.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_dataset_labels.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_dataset_ndata.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_dataset_shuffle.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_dataset_weights.Rd | 30 ggmlR-0.8.8/ggmlR/man/ggml_opt_default_params.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_epoch.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_eval.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_fit.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_fit_multi.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_free.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_get_lr.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_grad_acc.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_init.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_init_for_fit.Rd | 16 ggmlR-0.8.8/ggmlR/man/ggml_opt_init_for_fit_multi.Rd | 10 ggmlR-0.8.8/ggmlR/man/ggml_opt_inputs.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_labels.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_loss.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_loss_i.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_loss_type_binary_cross_entropy.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_loss_type_cross_entropy.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_loss_type_huber.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_loss_type_mae.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_loss_type_mean.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_loss_type_mse.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_loss_type_sum.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_loss_type_weighted_mse.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_n_loss.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_ncorrect.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_optimizer_name.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_optimizer_type_adamw.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_optimizer_type_sgd.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_outputs.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_outputs_i.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_pred.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_prepare_alloc.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_reset.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_result_accuracy.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_result_free.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_result_init.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_result_loss.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_result_loss_i.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_result_n_loss.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_result_ndata.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_result_pred.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_result_reset.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_set_lr.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_static_graphs.Rd | 5 ggmlR-0.8.8/ggmlR/man/ggml_opt_step_adamw.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_pad_ext.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_predict.Rd | 23 ggmlR-0.8.8/ggmlR/man/ggml_rms_norm_back.Rd | 4 ggmlR-0.8.8/ggmlR/man/ggml_scatter_elements.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_snapshot_free.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_trainer.Rd |only ggmlR-0.8.8/ggmlR/man/ggml_unfreeze_weights.Rd | 10 ggmlR-0.8.8/ggmlR/man/nn_build_layer_norm.Rd |only ggmlR-0.8.8/ggmlR/man/nn_build_permute.Rd |only ggmlR-0.8.8/ggmlR/man/nn_build_permute_op.Rd |only ggmlR-0.8.8/ggmlR/man/nn_build_reshape.Rd |only ggmlR-0.8.8/ggmlR/man/nn_build_reshape_op.Rd |only ggmlR-0.8.8/ggmlR/man/nn_build_rms_norm.Rd |only ggmlR-0.8.8/ggmlR/man/nn_check_permute_dims.Rd |only ggmlR-0.8.8/ggmlR/man/nn_check_reshape_shape.Rd |only ggmlR-0.8.8/ggmlR/man/nn_is_norm_type.Rd |only ggmlR-0.8.8/ggmlR/man/nn_layer_norm_core.Rd |only ggmlR-0.8.8/ggmlR/man/nn_norm_broadcast.Rd |only ggmlR-0.8.8/ggmlR/man/nn_permute_output_shape.Rd |only ggmlR-0.8.8/ggmlR/man/nn_reshape_output_shape.Rd |only ggmlR-0.8.8/ggmlR/man/nn_stack_time_steps.Rd |only ggmlR-0.8.8/ggmlR/man/onnx_graph_info.Rd |only ggmlR-0.8.8/ggmlR/man/onnx_run.Rd | 12 ggmlR-0.8.8/ggmlR/man/optimizer_adam.Rd | 34 ggmlR-0.8.8/ggmlR/man/optimizer_sgd.Rd | 37 ggmlR-0.8.8/ggmlR/man/with_grad_tape.Rd | 11 ggmlR-0.8.8/ggmlR/src/Makevars.in | 6 ggmlR-0.8.8/ggmlR/src/Makevars.win.in | 6 ggmlR-0.8.8/ggmlR/src/ggml-alloc.c | 13 ggmlR-0.8.8/ggmlR/src/ggml-backend-meta.cpp | 2 ggmlR-0.8.8/ggmlR/src/ggml-backend.cpp | 101 ggmlR-0.8.8/ggmlR/src/ggml-core.c | 21 ggmlR-0.8.8/ggmlR/src/ggml-cpu/binary-ops.cpp | 8 ggmlR-0.8.8/ggmlR/src/ggml-cpu/ggml-cpu-backend.c | 71 ggmlR-0.8.8/ggmlR/src/ggml-cpu/ops-elemwise.cpp | 212 ggmlR-0.8.8/ggmlR/src/ggml-cpu/ops-misc.cpp | 25 ggmlR-0.8.8/ggmlR/src/ggml-cpu/ops-rope-attn.cpp | 124 ggmlR-0.8.8/ggmlR/src/ggml-cpu/ops-ssm.cpp | 398 ggmlR-0.8.8/ggmlR/src/ggml-cpu/ops-tensor.cpp | 18 ggmlR-0.8.8/ggmlR/src/ggml-cpu/ops.h | 7 ggmlR-0.8.8/ggmlR/src/ggml-cpu/unary-ops.cpp | 36 ggmlR-0.8.8/ggmlR/src/ggml-cpu/unary-ops.h | 1 ggmlR-0.8.8/ggmlR/src/ggml-cpu/vec.h | 38 ggmlR-0.8.8/ggmlR/src/ggml-graph.c | 105 ggmlR-0.8.8/ggmlR/src/ggml-ops-builders.c | 350 ggmlR-0.8.8/ggmlR/src/ggml-opt.cpp | 60 ggmlR-0.8.8/ggmlR/src/ggml-opt.h | 24 ggmlR-0.8.8/ggmlR/src/ggml-vulkan.h | 41 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/ggml-vulkan-attn.cpp | 28 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/ggml-vulkan-device.cpp | 194 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/ggml-vulkan-elemwise.cpp | 469 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/ggml-vulkan-graph.cpp | 423 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/ggml-vulkan-matmul.cpp | 42 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/ggml-vulkan-misc.cpp | 63 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/ggml-vulkan-shaders.cpp | 201 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/ggml-vulkan-umap.cpp | 247 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/argmax.comp | 18 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/argsort.comp | 18 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/argsort_large.comp | 11 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/flash_attn_back.comp |only ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/gelu_back.comp |only ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/get_rows_back.comp |only ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/im2col_back.comp |only ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/nms.comp |only ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/norm_back.comp |only ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/out_prod.comp | 111 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/qconv_i32.comp |only ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/qmatmul_i32.comp |only ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/rel_pos_bias.comp | 29 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/roi_align.comp |only ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/round.comp | 3 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/round_even.comp |only ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/scatter_elements.comp | 56 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/step.comp | 6 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/topk_argsort.comp | 11 ggmlR-0.8.8/ggmlR/src/ggml-vulkan/vulkan-shaders/vulkan-shaders-gen.cpp | 25 ggmlR-0.8.8/ggmlR/src/ggml.h | 188 ggmlR-0.8.8/ggmlR/src/onnx/nms.c | 441 ggmlR-0.8.8/ggmlR/src/onnx/nms.h | 62 ggmlR-0.8.8/ggmlR/src/onnx/onnx_ggml.c | 5313 +++++++++- ggmlR-0.8.8/ggmlR/src/onnx/onnx_ggml.h | 363 ggmlR-0.8.8/ggmlR/src/onnx/onnx_loader.c | 67 ggmlR-0.8.8/ggmlR/src/onnx/onnx_loader.h | 39 ggmlR-0.8.8/ggmlR/src/onnx/onnx_ops_basic.c | 510 ggmlR-0.8.8/ggmlR/src/onnx/onnx_ops_internal.h | 86 ggmlR-0.8.8/ggmlR/src/onnx/onnx_ops_nn.c | 576 + ggmlR-0.8.8/ggmlR/src/onnx/onnx_ops_quant.c | 587 + ggmlR-0.8.8/ggmlR/src/onnx/onnx_ops_special.c | 238 ggmlR-0.8.8/ggmlR/src/onnx/onnx_ops_tensor.c | 1165 ++ ggmlR-0.8.8/ggmlR/src/onnx/qconv_i32.c |only ggmlR-0.8.8/ggmlR/src/onnx/qconv_i32.h |only ggmlR-0.8.8/ggmlR/src/onnx/qmatmul_i32.c |only ggmlR-0.8.8/ggmlR/src/onnx/qmatmul_i32.h |only ggmlR-0.8.8/ggmlR/src/onnx/r_onnx.c | 76 ggmlR-0.8.8/ggmlR/src/onnx/rel_pos_bias.h | 28 ggmlR-0.8.8/ggmlR/src/onnx/roi_align.c | 307 ggmlR-0.8.8/ggmlR/src/onnx/roi_align.h | 70 ggmlR-0.8.8/ggmlR/src/r_backend_ops_test.cpp | 45 ggmlR-0.8.8/ggmlR/src/r_ggml_compat.h | 4 ggmlR-0.8.8/ggmlR/src/r_ggml_io.c | 9 ggmlR-0.8.8/ggmlR/src/r_interface.c | 37 ggmlR-0.8.8/ggmlR/src/r_interface_graph.c | 361 ggmlR-0.8.8/ggmlR/src/r_interface_opt.c | 40 ggmlR-0.8.8/ggmlR/src/r_interface_scheduler.c | 20 ggmlR-0.8.8/ggmlR/src/r_interface_vulkan.c | 14 ggmlR-0.8.8/ggmlR/tests/testthat.R | 20 ggmlR-0.8.8/ggmlR/tests/testthat/_problems |only ggmlR-0.8.8/ggmlR/tests/testthat/helper-device.R | 20 ggmlR-0.8.8/ggmlR/tests/testthat/helper-onnx.R | 38 ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-adam-fused.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-backward-fallbacks.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-backward-graph.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-buffer.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-capture-step.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-capture.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-checkpoint.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-concat-rows.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-defer.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-device.R | 112 ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-flash-attn.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-flash-graph-bwd.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-grad-accum.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-grad-underflow.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-graph-mode.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-handle.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-layers.R | 102 ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-lazy-value.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-leaf-alias.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-linear-init.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-memory-budget.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-mha.R | 228 ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-optimizer-params.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-residency-scopes.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-residency.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-resident-adam.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-resident-grads.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-resident-integration.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-resident-ops.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-resident-weights.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-sample.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-select.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-slice-rows.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-state-dict.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-tape-memory.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-ag-training.R | 39 ggmlR-0.8.8/ggmlR/tests/testthat/test-alloc-output-view.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-argsort-ties-vulkan.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-autograd.R | 45 ggmlR-0.8.8/ggmlR/tests/testthat/test-backend-ops-diff.R | 9 ggmlR-0.8.8/ggmlR/tests/testthat/test-conv2d-numeric.R | 54 ggmlR-0.8.8/ggmlR/tests/testthat/test-embedding-attention.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-fit-generator.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-flash-attn-back-perf.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-flash-attn-back.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-freeze.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-gelu-backward.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-get-rows-back.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-getrows-offload-vulkan.R | 25 ggmlR-0.8.8/ggmlR/tests/testthat/test-im2col-back.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-input-types.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-loss-mask.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-matmul-precision.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-misc-ops.R | 27 ggmlR-0.8.8/ggmlR/tests/testthat/test-model-ops.R | 180 ggmlR-0.8.8/ggmlR/tests/testthat/test-new-functions.R | 20 ggmlR-0.8.8/ggmlR/tests/testthat/test-nn-attention-mask.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-nn-attention-rope.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-nn-attention.R | 6 ggmlR-0.8.8/ggmlR/tests/testthat/test-nn-permute.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-nn-positional-embedding.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-nn-reshape.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-nn-rms-norm.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-nn-sequence-pooling.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-nn-transformer-block.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-norm-back.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-activations.R | 184 ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-boundary.R | 34 ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-chain-batched-matmul.R | 67 ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-chain-erf-gelu.R | 17 ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-chain-quant.R | 60 ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-conv1d.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-edge.R | 33 ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-gather-rank1.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-gathernd.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-logic.R | 86 ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-mask2former-ops.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-minmax.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-optional-inputs.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-qconv-i32-im2col.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-qmatmul-i32.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-quant.R | 42 ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-reduce.R | 142 ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-resize.R | 31 ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-roialign-vulkan.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-scatternd.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-shape.R | 96 ggmlR-0.8.8/ggmlR/tests/testthat/test-onnx-transpose-highrank.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-out-prod-cpu-gpu.R | 23 ggmlR-0.8.8/ggmlR/tests/testthat/test-parsnip-tidymodels.R | 16 ggmlR-0.8.8/ggmlR/tests/testthat/test-quants-iq-degenerate.R | 15 ggmlR-0.8.8/ggmlR/tests/testthat/test-rnn-return-sequences.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-trainer.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-vk-matmul-prec.R |only ggmlR-0.8.8/ggmlR/tests/testthat/test-vulkan-cont-pipeline.R |only ggmlR-0.8.8/ggmlR/vignettes/autograd-engine.Rmd | 125 ggmlR-0.8.8/ggmlR/vignettes/data-parallel-training.Rmd | 8 ggmlR-0.8.8/ggmlR/vignettes/gpu-vulkan.Rmd | 14 ggmlR-0.8.8/ggmlR/vignettes/keras-like-api.Rmd | 11 393 files changed, 22402 insertions(+), 2429 deletions(-)
Title: Bayesian Prior Elicitation, Diagnostics, and Regulatory
Reporting
Description: A toolkit for constructing, validating, and justifying Bayesian priors
in clinical trial settings. Implements expert elicitation via quantile
matching, the roulette method, and moment matching across six distribution
families, linear and logarithmic expert pooling, meta-analytic-predictive
(MAP) priors derived from historical trials, prior-data conflict
diagnostics including the Box p-value (computed from the exact prior
predictive distribution where one has a closed form), an exploratory
surprisal (S-value) companion to it, surprise index, information
divergence, and Mahalanobis distance, sensitivity analyses with tornado
and influence heatmap plots, sceptical, robust, and power priors, and
automated prior justification reports. Includes a fully modular 'Shiny'
application for interactive use.
Methods based on O'Hagan et al. (2006, ISBN:9780470029886),
Box (1980) <doi:10.2307/2982063>,
Greenland (2023) <doi:10.1111/sjos.12625>,
Oakley and O'Hagan (2010) <https://tonyoha [...truncated...]
Author: Ndoh Penn [aut, cre]
Maintainer: Ndoh Penn <ndohpenn9@gmail.com>
Diff between bayprior versions 0.4.0 dated 2026-10-10 and 0.5.0 dated 2026-10-20
DESCRIPTION | 10 MD5 | 74 - NEWS.md | 80 + R/app_ui.R | 133 ++- R/bayprior-package.R | 4 R/conflict_sensitivity.R | 405 ++++++---- R/methods.R | 15 R/mod_conflict.R | 36 R/mod_sensitivity.R | 34 R/mod_welcome.R | 23 R/plotting.R | 139 ++- R/zzz_patches.R | 23 README.md | 17 inst/WORDLIST | 4 inst/app/www/bayprior-dark.css | 54 + inst/app/www/bp-live.css |only inst/app/www/bp-live.html |only inst/app/www/custom.css | 116 ++ inst/app/www/custom.js | 8 inst/doc/bayprior-introduction.html | 6 inst/doc/conflict-diagnostics.R | 6 inst/doc/conflict-diagnostics.Rmd | 43 - inst/doc/conflict-diagnostics.html | 59 - inst/doc/prior-elicitation.html | 4 inst/doc/regulatory-reporting.html | 4 inst/doc/robust-priors.html | 6 inst/doc/sensitivity-analysis.html | 4 inst/doc/using-with-rstanarm-brms.html | 4 man/bayprior.Rd | 4 man/plot_sensitivity.Rd | 14 man/plot_tornado.Rd | 13 man/print.bayprior_conflict.Rd | 4 man/prior_conflict.Rd | 104 ++ tests/testthat/_snaps/plots-snapshots/plot-power-prior-calib.svg | 26 tests/testthat/test-conflict.R | 201 ++++ tests/testthat/test-map-prior.R | 12 tests/testthat/test-patches.R | 10 tests/testthat/test-sensitivity.R | 115 ++ vignettes/conflict-diagnostics.Rmd | 43 - 39 files changed, 1447 insertions(+), 410 deletions(-)
Title: Provides User Tokens for Access to ICES Web Services
Description: Provides user tokens for ICES web services that require
authentication and authorization. Web services covered by this
package are ICES VMS database, the ICES DATSU web services, and the
ICES SharePoint site <https://www.ices.dk/data/tools/Pages/WebServices.aspx>.
Author: Colin Millar [aut, cre]
Maintainer: Colin Millar <colin.millar@ices.dk>
Diff between icesConnect versions 1.1.4 dated 2025-04-30 and 1.2.0 dated 2026-10-20
icesConnect-1.1.4/icesConnect/R/clear_token.R |only icesConnect-1.1.4/icesConnect/R/clear_username.R |only icesConnect-1.1.4/icesConnect/R/get_username.R |only icesConnect-1.1.4/icesConnect/R/user_password.R |only icesConnect-1.1.4/icesConnect/man/clear_token.Rd |only icesConnect-1.2.0/icesConnect/DESCRIPTION | 10 - icesConnect-1.2.0/icesConnect/MD5 | 51 +++---- icesConnect-1.2.0/icesConnect/NAMESPACE | 6 icesConnect-1.2.0/icesConnect/NEWS.md | 37 ++++- icesConnect-1.2.0/icesConnect/R/decode_token.R | 55 +++++--- icesConnect-1.2.0/icesConnect/R/has_token.R | 16 +- icesConnect-1.2.0/icesConnect/R/ices_get.R | 18 ++ icesConnect-1.2.0/icesConnect/R/ices_get_jwt.R | 33 ++-- icesConnect-1.2.0/icesConnect/R/ices_patch_jwt.R | 33 ++-- icesConnect-1.2.0/icesConnect/R/ices_post.R | 2 icesConnect-1.2.0/icesConnect/R/ices_post_jwt.R | 33 ++-- icesConnect-1.2.0/icesConnect/R/ices_request_jwt.R | 72 ++++++---- icesConnect-1.2.0/icesConnect/R/ices_token.R | 80 +++++------- icesConnect-1.2.0/icesConnect/R/onAttach.R | 30 ++-- icesConnect-1.2.0/icesConnect/R/set_token.R |only icesConnect-1.2.0/icesConnect/R/set_username.R | 22 +-- icesConnect-1.2.0/icesConnect/R/token_expiration.R | 51 +++---- icesConnect-1.2.0/icesConnect/R/token_getset_from_keyring.R | 24 ++- icesConnect-1.2.0/icesConnect/R/token_user.R | 49 +++---- icesConnect-1.2.0/icesConnect/README.md | 34 +++-- icesConnect-1.2.0/icesConnect/man/decode_token.Rd | 12 - icesConnect-1.2.0/icesConnect/man/ices_request_jwt.Rd | 39 ++--- icesConnect-1.2.0/icesConnect/man/ices_token.Rd | 28 ++-- icesConnect-1.2.0/icesConnect/man/set_token.Rd |only icesConnect-1.2.0/icesConnect/man/set_username.Rd | 38 +---- 30 files changed, 403 insertions(+), 370 deletions(-)
Title: Efficient Estimation of the Causal Effects of Stochastic
Interventions
Description: Efficient estimation of the population-level causal effects of
stochastic interventions on a continuous-valued exposure. Both one-step and
targeted minimum loss estimators are implemented for the counterfactual mean
value of an outcome of interest under an additive modified treatment policy,
a stochastic intervention that may depend on the natural value of the
exposure. To accommodate settings with outcome-dependent two-phase
sampling, procedures incorporating inverse probability of censoring
weighting are provided to facilitate the construction of inefficient and
efficient one-step and targeted minimum loss estimators. The causal
parameter and its estimation were first described by Díaz and van der Laan
(2013) <doi:10.1111/j.1541-0420.2011.01685.x>, while the multiply robust
estimation procedure and its application to data from two-phase sampling
designs is detailed in NS Hejazi, MJ van der Laan, HE Janes, PB Gilbert,
and DC Benkeser (2020) <doi:10.1111/biom.13375>. The s [...truncated...]
Author: Nima Hejazi [aut, cre, cph] ,
David Benkeser [aut] ,
Ivan Diaz [ctb] ,
Jeremy Coyle [ctb] ,
Lauren Eyler Dang [ctb],
Mark van der Laan [ctb, ths]
Maintainer: Nima Hejazi <nh@nimahejazi.org>
Diff between txshift versions 0.3.8 dated 2022-02-09 and 0.4.0 dated 2026-10-20
DESCRIPTION | 31 - LICENSE | 2 MD5 | 62 +- NAMESPACE | 68 +-- NEWS.md | 258 +++++++---- R/bound.R | 21 R/eifs.R | 1 R/fit_mechanisms.R | 53 +- R/msm.R | 9 R/onestep_txshift.R | 5 R/tmle_txshift.R | 6 R/txshift.R | 7 README.md | 315 +++++++------- build/vignette.rds |binary inst/CITATION | 2 inst/REFERENCES.bib | 26 + inst/doc/intro_txshift.R | 140 +++--- inst/doc/intro_txshift.Rmd | 24 - inst/doc/intro_txshift.html | 760 ++++++++++++++++++++++------------- man/bound_propensity.Rd | 14 man/est_Hn.Rd | 7 man/est_Q.Rd | 12 man/est_g_cens.Rd | 7 man/est_g_exp.Rd | 8 man/onestep_txshift.Rd | 5 man/tmle_txshift.Rd | 5 man/txshift.Rd | 6 tests/testthat/test-censoring_mech.R | 8 tests/testthat/test-estim_tmle_os.R | 10 tests/testthat/test-msm_vim.R | 14 tests/testthat/test-nuisance_est.R | 30 + vignettes/intro_txshift.Rmd | 24 - 32 files changed, 1206 insertions(+), 734 deletions(-)
Title: Automate the Delineation of Urban River Spaces
Description: Provides tools to automate the morphological delineation of
riverside urban areas based on a method introduced in Forgaci (2018)
<doi:10.7480/abe.2018.31>. Delineation entails the identification of
corridor boundaries, segmentation of the corridor, and delineation of
the river space using two-dimensional spatial information from street
network data and digital elevation data in a projected CRS. The
resulting delineation can be used to characterise spatial phenomena
that can be related to the river as a central element.
Author: Claudiu Forgaci [aut, cre, cph] ,
Francesco Nattino [aut] ,
Fakhereh Alidoost [ctb] ,
Meiert Willem Grootes [ctb] ,
Yehan Wu [ctb] ,
Netherlands eScience Center [fnd],
Mark Padgham [rev] for rOpenSci,
see <https://github.com/ropensci/software-review [...truncated...]
Maintainer: Claudiu Forgaci <c.forgaci@tudelft.nl>
Diff between rcrisp versions 0.3.2 dated 2026-09-22 and 1.0.0 dated 2026-10-20
rcrisp-0.3.2/rcrisp/R/osmdata.R |only rcrisp-0.3.2/rcrisp/man/get_osmdata.Rd |only rcrisp-0.3.2/rcrisp/man/get_osmdata_cache_filepath.Rd |only rcrisp-0.3.2/rcrisp/tests/testthat/helper-osmdata.R |only rcrisp-0.3.2/rcrisp/tests/testthat/test-osmdata.R |only rcrisp-1.0.0/rcrisp/DESCRIPTION | 31 rcrisp-1.0.0/rcrisp/MD5 | 256 ++-- rcrisp-1.0.0/rcrisp/NAMESPACE | 27 rcrisp-1.0.0/rcrisp/NEWS.md | 62 rcrisp-1.0.0/rcrisp/R/aoi.R |only rcrisp-1.0.0/rcrisp/R/cache.R | 46 rcrisp-1.0.0/rcrisp/R/corridor.R | 44 rcrisp-1.0.0/rcrisp/R/delineate.R | 625 ++++++++-- rcrisp-1.0.0/rcrisp/R/exampledata.R | 6 rcrisp-1.0.0/rcrisp/R/network.R | 48 rcrisp-1.0.0/rcrisp/R/osm.R |only rcrisp-1.0.0/rcrisp/R/riverspace.R | 11 rcrisp-1.0.0/rcrisp/R/segments.R | 6 rcrisp-1.0.0/rcrisp/R/srr-stats-standards.R | 48 rcrisp-1.0.0/rcrisp/R/utils.R | 89 + rcrisp-1.0.0/rcrisp/R/valley.R | 57 rcrisp-1.0.0/rcrisp/R/visualisation.R |only rcrisp-1.0.0/rcrisp/R/zzz.R | 4 rcrisp-1.0.0/rcrisp/README.md | 101 + rcrisp-1.0.0/rcrisp/build/partial.rdb |binary rcrisp-1.0.0/rcrisp/build/vignette.rds |binary rcrisp-1.0.0/rcrisp/inst/doc/getting-started.Rmd | 44 rcrisp-1.0.0/rcrisp/inst/doc/getting-started.html | 92 - rcrisp-1.0.0/rcrisp/inst/doc/vig_01-method.R |only rcrisp-1.0.0/rcrisp/inst/doc/vig_01-method.Rmd | 8 rcrisp-1.0.0/rcrisp/inst/doc/vig_02-getting-osm-data.Rmd | 56 rcrisp-1.0.0/rcrisp/inst/doc/vig_02-getting-osm-data.html | 86 - rcrisp-1.0.0/rcrisp/inst/doc/vig_03-network-preparation.R |only rcrisp-1.0.0/rcrisp/inst/doc/vig_03-network-preparation.Rmd | 6 rcrisp-1.0.0/rcrisp/inst/doc/vig_04-valley-delineation.R |only rcrisp-1.0.0/rcrisp/inst/doc/vig_04-valley-delineation.Rmd | 16 rcrisp-1.0.0/rcrisp/inst/doc/vig_05-corridor-delineation.Rmd | 18 rcrisp-1.0.0/rcrisp/inst/doc/vig_05-corridor-delineation.html | 40 rcrisp-1.0.0/rcrisp/inst/doc/vig_06-corridor-segmentation.R |only rcrisp-1.0.0/rcrisp/inst/doc/vig_06-corridor-segmentation.Rmd | 17 rcrisp-1.0.0/rcrisp/inst/doc/vig_06-corridor-segmentation.html | 20 rcrisp-1.0.0/rcrisp/inst/doc/vig_07-riverspace-delineation.Rmd | 2 rcrisp-1.0.0/rcrisp/inst/doc/vig_07-riverspace-delineation.html | 13 rcrisp-1.0.0/rcrisp/inst/doc/vig_08-benchmark.R |only rcrisp-1.0.0/rcrisp/inst/doc/vig_08-benchmark.Rmd |only rcrisp-1.0.0/rcrisp/inst/doc/vig_08-benchmark.html |only rcrisp-1.0.0/rcrisp/inst/extdata |only rcrisp-1.0.0/rcrisp/man/as_crs.Rd | 2 rcrisp-1.0.0/rcrisp/man/as_network.Rd | 15 rcrisp-1.0.0/rcrisp/man/buffer.Rd | 4 rcrisp-1.0.0/rcrisp/man/cache_directory.Rd | 4 rcrisp-1.0.0/rcrisp/man/cap_corridor.Rd | 2 rcrisp-1.0.0/rcrisp/man/check_cache.Rd | 4 rcrisp-1.0.0/rcrisp/man/clean_network.Rd | 2 rcrisp-1.0.0/rcrisp/man/clear_cache.Rd | 4 rcrisp-1.0.0/rcrisp/man/clip_and_filter.Rd | 2 rcrisp-1.0.0/rcrisp/man/combine_river_features.Rd | 10 rcrisp-1.0.0/rcrisp/man/corridor_edge.Rd | 2 rcrisp-1.0.0/rcrisp/man/corridor_end_points.Rd | 2 rcrisp-1.0.0/rcrisp/man/default_stac_dem.Rd | 5 rcrisp-1.0.0/rcrisp/man/define_aoi.Rd |only rcrisp-1.0.0/rcrisp/man/delineate.Rd | 96 - rcrisp-1.0.0/rcrisp/man/delineate_city_river.Rd |only rcrisp-1.0.0/rcrisp/man/delineate_corridor.Rd | 4 rcrisp-1.0.0/rcrisp/man/delineate_riverspace.Rd | 11 rcrisp-1.0.0/rcrisp/man/delineate_segments.Rd | 4 rcrisp-1.0.0/rcrisp/man/delineate_valley.Rd | 2 rcrisp-1.0.0/rcrisp/man/delineation.Rd |only rcrisp-1.0.0/rcrisp/man/figures/README-example-1.png |binary rcrisp-1.0.0/rcrisp/man/figures/logo.png |only rcrisp-1.0.0/rcrisp/man/filter_clusters.Rd | 2 rcrisp-1.0.0/rcrisp/man/flatten_network.Rd | 4 rcrisp-1.0.0/rcrisp/man/geom_delineation.Rd |only rcrisp-1.0.0/rcrisp/man/get_corridor_edges.Rd | 2 rcrisp-1.0.0/rcrisp/man/get_dem.Rd | 27 rcrisp-1.0.0/rcrisp/man/get_dem_cache_filepath.Rd | 2 rcrisp-1.0.0/rcrisp/man/get_dem_example_data.Rd | 4 rcrisp-1.0.0/rcrisp/man/get_intersecting_edges.Rd | 2 rcrisp-1.0.0/rcrisp/man/get_osm.Rd |only rcrisp-1.0.0/rcrisp/man/get_osm_bb.Rd | 4 rcrisp-1.0.0/rcrisp/man/get_osm_buildings.Rd | 6 rcrisp-1.0.0/rcrisp/man/get_osm_cache_filepath.Rd |only rcrisp-1.0.0/rcrisp/man/get_osm_city_boundary.Rd | 6 rcrisp-1.0.0/rcrisp/man/get_osm_example_data.Rd | 2 rcrisp-1.0.0/rcrisp/man/get_osm_id_cache_filepath.Rd |only rcrisp-1.0.0/rcrisp/man/get_osm_railways.Rd | 6 rcrisp-1.0.0/rcrisp/man/get_osm_river_centerline.Rd | 21 rcrisp-1.0.0/rcrisp/man/get_osm_river_surface.Rd | 10 rcrisp-1.0.0/rcrisp/man/get_osm_streets.Rd | 6 rcrisp-1.0.0/rcrisp/man/get_river_aoi.Rd | 6 rcrisp-1.0.0/rcrisp/man/get_river_banks.Rd | 2 rcrisp-1.0.0/rcrisp/man/get_stac_asset_urls.Rd | 2 rcrisp-1.0.0/rcrisp/man/initial_edges.Rd | 2 rcrisp-1.0.0/rcrisp/man/load_dem.Rd | 4 rcrisp-1.0.0/rcrisp/man/load_raster.Rd | 2 rcrisp-1.0.0/rcrisp/man/match_osm_name.Rd | 6 rcrisp-1.0.0/rcrisp/man/nearest_node.Rd | 2 rcrisp-1.0.0/rcrisp/man/nominatim_waterway_lookup.Rd |only rcrisp-1.0.0/rcrisp/man/osmdata_as_sf.Rd | 4 rcrisp-1.0.0/rcrisp/man/osmdata_as_sf_by_id.Rd |only rcrisp-1.0.0/rcrisp/man/osmdata_id_query.Rd |only rcrisp-1.0.0/rcrisp/man/osmdata_query.Rd | 2 rcrisp-1.0.0/rcrisp/man/plot.delineation.Rd |only rcrisp-1.0.0/rcrisp/man/preprocess_distance.Rd |only rcrisp-1.0.0/rcrisp/man/print.delineation.Rd |only rcrisp-1.0.0/rcrisp/man/print.summary.delineation.Rd |only rcrisp-1.0.0/rcrisp/man/rcrisp-package.Rd | 3 rcrisp-1.0.0/rcrisp/man/read_data_from_cache.Rd | 4 rcrisp-1.0.0/rcrisp/man/reproject.Rd | 4 rcrisp-1.0.0/rcrisp/man/river_buffer.Rd | 2 rcrisp-1.0.0/rcrisp/man/select_nonintersecting_lines.Rd | 2 rcrisp-1.0.0/rcrisp/man/shortest_path.Rd | 2 rcrisp-1.0.0/rcrisp/man/summary.delineation.Rd |only rcrisp-1.0.0/rcrisp/man/write_data_to_cache.Rd | 2 rcrisp-1.0.0/rcrisp/tests/testthat/_snaps |only rcrisp-1.0.0/rcrisp/tests/testthat/helper-osm.R |only rcrisp-1.0.0/rcrisp/tests/testthat/test-aoi.R |only rcrisp-1.0.0/rcrisp/tests/testthat/test-cache.R | 35 rcrisp-1.0.0/rcrisp/tests/testthat/test-corridor.R | 63 + rcrisp-1.0.0/rcrisp/tests/testthat/test-delineate.R | 233 ++- rcrisp-1.0.0/rcrisp/tests/testthat/test-extended.R | 11 rcrisp-1.0.0/rcrisp/tests/testthat/test-network.R | 81 + rcrisp-1.0.0/rcrisp/tests/testthat/test-osm.R |only rcrisp-1.0.0/rcrisp/tests/testthat/test-performance.R |only rcrisp-1.0.0/rcrisp/tests/testthat/test-riverspace.R | 31 rcrisp-1.0.0/rcrisp/tests/testthat/test-segments.R | 40 rcrisp-1.0.0/rcrisp/tests/testthat/test-utils.R | 57 rcrisp-1.0.0/rcrisp/tests/testthat/test-valley.R | 73 + rcrisp-1.0.0/rcrisp/tests/testthat/test-visualisation.R |only rcrisp-1.0.0/rcrisp/vignettes/getting-started.Rmd | 44 rcrisp-1.0.0/rcrisp/vignettes/getting-started.Rmd.orig | 44 rcrisp-1.0.0/rcrisp/vignettes/img/alternatives.png |only rcrisp-1.0.0/rcrisp/vignettes/img/getting-started-plot-1.png |binary rcrisp-1.0.0/rcrisp/vignettes/img/vig_05-corridor-delineation-plot-1.png |binary rcrisp-1.0.0/rcrisp/vignettes/img/vig_06-corridor-segmentation-plot-segmentation-1.png |binary rcrisp-1.0.0/rcrisp/vignettes/img/vig_08-benchmark-bar-chart-1.png |only rcrisp-1.0.0/rcrisp/vignettes/precompile.R | 60 rcrisp-1.0.0/rcrisp/vignettes/vig_01-method.Rmd | 8 rcrisp-1.0.0/rcrisp/vignettes/vig_02-getting-osm-data.Rmd | 56 rcrisp-1.0.0/rcrisp/vignettes/vig_02-getting-osm-data.Rmd.orig | 53 rcrisp-1.0.0/rcrisp/vignettes/vig_03-network-preparation.Rmd | 6 rcrisp-1.0.0/rcrisp/vignettes/vig_04-valley-delineation.Rmd | 16 rcrisp-1.0.0/rcrisp/vignettes/vig_05-corridor-delineation.Rmd | 18 rcrisp-1.0.0/rcrisp/vignettes/vig_05-corridor-delineation.Rmd.orig | 18 rcrisp-1.0.0/rcrisp/vignettes/vig_06-corridor-segmentation.Rmd | 17 rcrisp-1.0.0/rcrisp/vignettes/vig_06-corridor-segmentation.Rmd.orig | 5 rcrisp-1.0.0/rcrisp/vignettes/vig_07-riverspace-delineation.Rmd | 2 rcrisp-1.0.0/rcrisp/vignettes/vig_07-riverspace-delineation.Rmd.orig | 2 rcrisp-1.0.0/rcrisp/vignettes/vig_08-benchmark.Rmd |only rcrisp-1.0.0/rcrisp/vignettes/vig_08-benchmark.Rmd.orig |only 150 files changed, 2237 insertions(+), 945 deletions(-)
Title: Partial Eta-Squared for Crossed, Nested, and Mixed Linear Mixed
Models
Description: Computes partial eta-squared effect sizes for fixed effects in
linear mixed models fitted with the 'lme4' package. Supports crossed,
nested, and mixed (crossed-and-nested) random effects structures with any
number of grouping factors. Mixed designs handle cases where grouping
factors are simultaneously crossed with some variables and nested within
others (e.g., photos nested within models, but both crossed with
participants). Factor predictors are supported directly. Random slope
variances are translated to the
outcome scale using a variance decomposition approach, correctly accounting
for predictor scaling and interaction terms. Both general and operative
effect sizes are provided, with optional parametric bootstrap confidence
intervals. For correlated predictors, per-predictor effect sizes use unique
(semipartial) variance by default. Methods are based on Correll, Mellinger, McClelland, and Judd
(2020) <doi:10.1016/j.tics.2019.12.009>, Correll, Mellinger, and Pedersen
(2022) &l [...truncated...]
Author: Brandon Cohen [aut, cre] ,
Joshua Correll [aut, ths]
Maintainer: Brandon Cohen <brandon.cohen-1@colorado.edu>
Diff between pecanr versions 0.3.1 dated 2026-07-09 and 0.4.0 dated 2026-10-20
pecanr-0.3.1/pecanr/man/eta2p_omnibus.Rd |only pecanr-0.4.0/pecanr/DESCRIPTION | 11 - pecanr-0.4.0/pecanr/MD5 | 19 +- pecanr-0.4.0/pecanr/NAMESPACE | 3 pecanr-0.4.0/pecanr/NEWS.md | 21 ++ pecanr-0.4.0/pecanr/R/eta2p.R | 245 ++++++++++++++---------------- pecanr-0.4.0/pecanr/README.md | 127 ++------------- pecanr-0.4.0/pecanr/inst/WORDLIST | 2 pecanr-0.4.0/pecanr/man/batch_eta2p.Rd | 3 pecanr-0.4.0/pecanr/man/eta2p.Rd | 70 ++++++-- pecanr-0.4.0/pecanr/man/pecanr-package.Rd | 2 11 files changed, 240 insertions(+), 263 deletions(-)
Title: Interface to 'the CAVD DataSpace'
Description: Provides a convenient API interface to access immunological data
within 'the CAVD DataSpace'(<https://dataspace.cavd.org>), a data sharing
and discovery tool that facilitates exploration of HIV immunological data
from pre-clinical and clinical HIV vaccine studies.
Author: Ju Yeong Kim [aut],
Sean Hughes [rev],
Jason Taylor [aut, cre],
Helen Miller [aut],
Kellie MacPhee [rev],
CAVD DataSpace [cph]
Maintainer: Jason Taylor <jmtaylor@fredhutch.org>
Diff between DataSpaceR versions 1.0.2 dated 2026-08-26 and 1.0.3 dated 2026-10-20
DESCRIPTION | 7 +-- MD5 | 66 +++++++++++++++---------------- NEWS.md | 6 ++ R/DataSpaceConnection.R | 8 +-- R/DataSpaceDaash.R | 68 +++++++++++++++++--------------- R/DataSpaceDonors.R | 4 - R/DataSpaceMabs.R | 32 ++++++++------- R/helpers.R | 37 ++++++++--------- R/netrc.R | 7 ++- build/vignette.rds |binary inst/doc/DataSpaceR.Rmd | 45 --------------------- inst/doc/DataSpaceR.html | 46 +-------------------- inst/doc/DataSpace_DAASH.Rmd | 2 inst/doc/DataSpace_DAASH.html | 4 - inst/doc/Monoconal_Antibody_Data.Rmd | 2 inst/doc/Monoconal_Antibody_Data.html | 4 - inst/doc/Publication_Data.Rmd | 2 inst/doc/Publication_Data.html | 4 - inst/doc/Studies_Groups.Rmd | 2 inst/doc/Studies_Groups.html | 4 - inst/doc/Virus_Name_Mapping_Tables.Rmd | 2 inst/doc/Virus_Name_Mapping_Tables.html | 4 - man/DataSpaceConnection.Rd | 2 man/writeNetrc.Rd | 7 ++- tests/testthat/test-connection.R | 22 ++++------ tests/testthat/test-daash.R | 11 +++++ tests/testthat/test-mabs-donors.R | 19 ++++++++ vignettes/DataSpaceR.Rmd | 45 --------------------- vignettes/DataSpaceR.Rmd.orig | 2 vignettes/DataSpace_DAASH.Rmd | 2 vignettes/Monoconal_Antibody_Data.Rmd | 2 vignettes/Publication_Data.Rmd | 2 vignettes/Studies_Groups.Rmd | 2 vignettes/Virus_Name_Mapping_Tables.Rmd | 2 34 files changed, 203 insertions(+), 271 deletions(-)
Title: 'Shiny' Bindings for 'Designsystemet' Components
Description: Provides 'R' wrappers for the 'Designsystemet' component library
<https://designsystemet.no>, enabling use of Norwegian government design system
components in 'Shiny' applications. Includes web components and CSS-based
HTML components with full 'Shiny' input binding support.
Author: Novica Nakov [aut, cre, cph]
Maintainer: Novica Nakov <nnovica@gmail.com>
Diff between shinyds versions 0.6.0 dated 2026-09-24 and 0.7.2 dated 2026-10-20
shinyds-0.6.0/shinyds/man/dot-ds_classes.Rd |only shinyds-0.6.0/shinyds/man/figures/shinyds.svg |only shinyds-0.7.2/shinyds/DESCRIPTION | 13 shinyds-0.7.2/shinyds/MD5 | 80 - shinyds-0.7.2/shinyds/NAMESPACE | 12 shinyds-0.7.2/shinyds/NEWS.md | 19 shinyds-0.7.2/shinyds/R/aaa-utils.R | 5 shinyds-0.7.2/shinyds/R/ds-alert.R | 23 shinyds-0.7.2/shinyds/R/ds-breadcrumbs.R | 11 shinyds-0.7.2/shinyds/R/ds-button.R | 18 shinyds-0.7.2/shinyds/R/ds-card.R | 24 shinyds-0.7.2/shinyds/R/ds-dependencies.R | 37 shinyds-0.7.2/shinyds/R/ds-details.R | 107 + shinyds-0.7.2/shinyds/R/ds-error-summary.R | 13 shinyds-0.7.2/shinyds/R/ds-field.R | 26 shinyds-0.7.2/shinyds/R/ds-input.R | 252 ++- shinyds-0.7.2/shinyds/R/ds-list.R | 11 shinyds-0.7.2/shinyds/R/ds-misc.R | 254 ++- shinyds-0.7.2/shinyds/R/ds-pagination.R | 40 shinyds-0.7.2/shinyds/R/ds-suggestion.R | 72 - shinyds-0.7.2/shinyds/R/ds-table.R | 13 shinyds-0.7.2/shinyds/R/ds-tabs.R | 60 shinyds-0.7.2/shinyds/R/ds-typography.R | 52 shinyds-0.7.2/shinyds/R/zzz.R | 10 shinyds-0.7.2/shinyds/README.md | 42 shinyds-0.7.2/shinyds/inst/CITATION |only shinyds-0.7.2/shinyds/inst/doc/getting-started.R | 5 shinyds-0.7.2/shinyds/inst/doc/getting-started.html | 13 shinyds-0.7.2/shinyds/inst/doc/getting-started.qmd | 5 shinyds-0.7.2/shinyds/inst/doc/reactivity-patterns.html | 2 shinyds-0.7.2/shinyds/inst/examples/basic/app.R | 9 shinyds-0.7.2/shinyds/inst/examples/faithful/app.R | 123 + shinyds-0.7.2/shinyds/inst/examples/showcase/app.R | 663 +++++++--- shinyds-0.7.2/shinyds/inst/www/css/designsystemet.min.css | 4 shinyds-0.7.2/shinyds/inst/www/js/designsystemet-web.umd.js | 12 shinyds-0.7.2/shinyds/man/ds_theme.Rd | 2 shinyds-0.7.2/shinyds/man/figures/logo.svg |only shinyds-0.7.2/shinyds/man/use_designsystemet.Rd | 2 shinyds-0.7.2/shinyds/tests/testthat/test-components.R | 17 shinyds-0.7.2/shinyds/tests/testthat/test-showcase-shinytest.R | 21 shinyds-0.7.2/shinyds/tests/testthat/test-showcase.R | 33 shinyds-0.7.2/shinyds/tests/testthat/test-web-components.R | 6 shinyds-0.7.2/shinyds/vignettes/getting-started.qmd | 5 43 files changed, 1398 insertions(+), 718 deletions(-)
Title: Get Data from the Swiss Federal Statistical Office
Description: Search and download data from the Swiss Federal Statistical Office (BFS) APIs <https://www.bfs.admin.ch/>.
Author: Felix Luginbuhl [aut, cre, cph] ,
Marius Hodel [ctb] ,
Janosch Brenzel-Weiss [ctb],
Joao Martins [ctb],
Philipp Baumann [ctb]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between BFS versions 0.7.2 dated 2026-07-03 and 0.8.0 dated 2026-10-20
BFS-0.7.2/BFS/man/bfs_get_sse_url.Rd |only BFS-0.7.2/BFS/man/get_xml_name.Rd |only BFS-0.8.0/BFS/DESCRIPTION | 16 BFS-0.8.0/BFS/MD5 | 135 + BFS-0.8.0/BFS/NAMESPACE | 6 BFS-0.8.0/BFS/NEWS.md | 185 ++ BFS-0.8.0/BFS/R/BFS-package.R | 38 BFS-0.8.0/BFS/R/bfs_clear_cache.R |only BFS-0.8.0/BFS/R/bfs_download_asset.R | 43 BFS-0.8.0/BFS/R/bfs_download_geodata.R | 47 BFS-0.8.0/BFS/R/bfs_get_asset_metadata.R | 36 BFS-0.8.0/BFS/R/bfs_get_base_maps.R | 232 +- BFS-0.8.0/BFS/R/bfs_get_catalog.R | 15 BFS-0.8.0/BFS/R/bfs_get_catalog_data.R | 213 -- BFS-0.8.0/BFS/R/bfs_get_catalog_geodata.R | 44 BFS-0.8.0/BFS/R/bfs_get_catalog_tables.R | 179 -- BFS-0.8.0/BFS/R/bfs_get_data.R | 88 - BFS-0.8.0/BFS/R/bfs_get_data_comments.R | 53 BFS-0.8.0/BFS/R/bfs_get_metadata.R | 31 BFS-0.8.0/BFS/R/bfs_get_sse_data.R | 91 - BFS-0.8.0/BFS/R/bfs_get_sse_metadata.R | 104 + BFS-0.8.0/BFS/R/bfs_sse.R |only BFS-0.8.0/BFS/R/bfs_sse_helpers.R | 68 BFS-0.8.0/BFS/R/data.R | 226 +- BFS-0.8.0/BFS/R/utils-catalog.R |only BFS-0.8.0/BFS/R/utils-http-error.R |only BFS-0.8.0/BFS/R/utils-pxweb.R |only BFS-0.8.0/BFS/R/utils-sse.R |only BFS-0.8.0/BFS/README.md | 931 +----------- BFS-0.8.0/BFS/build |only BFS-0.8.0/BFS/inst |only BFS-0.8.0/BFS/man/BFS-package.Rd | 24 BFS-0.8.0/BFS/man/bfs_clear_cache.Rd |only BFS-0.8.0/BFS/man/bfs_download_asset.Rd | 42 BFS-0.8.0/BFS/man/bfs_download_geodata.Rd | 48 BFS-0.8.0/BFS/man/bfs_get_asset_metadata.Rd | 30 BFS-0.8.0/BFS/man/bfs_get_base_maps.Rd | 71 BFS-0.8.0/BFS/man/bfs_get_catalog.Rd | 17 BFS-0.8.0/BFS/man/bfs_get_catalog_data.Rd | 86 - BFS-0.8.0/BFS/man/bfs_get_catalog_geodata.Rd | 30 BFS-0.8.0/BFS/man/bfs_get_catalog_tables.Rd | 87 - BFS-0.8.0/BFS/man/bfs_get_data.Rd | 61 BFS-0.8.0/BFS/man/bfs_get_data_comments.Rd | 40 BFS-0.8.0/BFS/man/bfs_get_metadata.Rd | 35 BFS-0.8.0/BFS/man/bfs_get_sse_data.Rd | 65 BFS-0.8.0/BFS/man/bfs_get_sse_metadata.Rd | 51 BFS-0.8.0/BFS/man/bfs_sse_data.Rd |only BFS-0.8.0/BFS/man/bfs_sse_datasets.Rd |only BFS-0.8.0/BFS/man/bfs_sse_dimensions.Rd |only BFS-0.8.0/BFS/man/figures/lifecycle-deprecated.svg |only BFS-0.8.0/BFS/man/figures/lifecycle-experimental.svg |only BFS-0.8.0/BFS/man/figures/lifecycle-stable.svg |only BFS-0.8.0/BFS/man/figures/lifecycle-superseded.svg |only BFS-0.8.0/BFS/man/pipe.Rd | 2 BFS-0.8.0/BFS/man/register_bzn.Rd | 30 BFS-0.8.0/BFS/man/register_dic.Rd | 34 BFS-0.8.0/BFS/man/register_gde.Rd | 43 BFS-0.8.0/BFS/man/register_gde_other.Rd | 32 BFS-0.8.0/BFS/man/register_kt.Rd | 29 BFS-0.8.0/BFS/man/register_kt_seeanteile.Rd | 32 BFS-0.8.0/BFS/tests/testthat/fixtures |only BFS-0.8.0/BFS/tests/testthat/helper-skip.R |only BFS-0.8.0/BFS/tests/testthat/test-abort_on_http_error.R |only BFS-0.8.0/BFS/tests/testthat/test-bfs_download_asset.R | 55 BFS-0.8.0/BFS/tests/testthat/test-bfs_get_asset_metadata.R | 74 BFS-0.8.0/BFS/tests/testthat/test-bfs_get_base_maps.R | 190 +- BFS-0.8.0/BFS/tests/testthat/test-bfs_get_catalog_data.R | 75 BFS-0.8.0/BFS/tests/testthat/test-bfs_get_catalog_geodata.R | 36 BFS-0.8.0/BFS/tests/testthat/test-bfs_get_catalog_tables.R | 47 BFS-0.8.0/BFS/tests/testthat/test-bfs_get_data.R | 103 - BFS-0.8.0/BFS/tests/testthat/test-bfs_get_data_comments.R | 75 BFS-0.8.0/BFS/tests/testthat/test-bfs_get_metadata.R | 17 BFS-0.8.0/BFS/tests/testthat/test-bfs_get_sse_data.R | 89 - BFS-0.8.0/BFS/tests/testthat/test-bfs_get_sse_metadata.R | 21 BFS-0.8.0/BFS/tests/testthat/test-bfs_get_sse_url.R | 21 BFS-0.8.0/BFS/tests/testthat/test-bfs_sse.R |only BFS-0.8.0/BFS/tests/testthat/test-offline.R |only BFS-0.8.0/BFS/vignettes |only 78 files changed, 2223 insertions(+), 2250 deletions(-)
Title: Integrated Retrieval and Analysis of 'PubMed', 'NIH', and 'NLM'
Literature Data
Description: Retrieve and analyze biomedical literature from 'PubMed' and
the wider 'NIH'/'NLM' data stack through a single, PMID-centered
interface. A PubMed search resolves to a set of PMIDs, which can be used
to retrieve article metadata and abstracts, author affiliations,
'iCite' citation data and links, 'PubTator3' entity and relation
annotations, and open-access full text from 'PMC'. A local analysis layer
operates on the retrieved tables, supporting corpus expansion through
citation links, citation network construction, sentence-level entity
co-occurrence, inspection of relation evidence, and 'MeSH' descriptor
keyness.
Author: Jason Timm [aut, cre]
Maintainer: Jason Timm <JaTimm@salud.unm.edu>
Diff between puremoe versions 1.1.0 dated 2026-06-24 and 1.1.1 dated 2026-10-20
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NEWS.md | 13 +++++++++++++ R/pubtator_network.R | 11 +++++++---- R/source_pmc.R | 18 +++++++++++++++--- README.md | 2 +- man/pubtator_network.Rd | 5 +++-- tests/testthat/test-pubtator_network.R | 17 +++++++++++++++++ tests/testthat/test-source_pmc.R |only 9 files changed, 67 insertions(+), 20 deletions(-)
Title: Parallel Bayesian Optimization of Hyperparameters
Description: Fast, flexible framework for implementing Bayesian
optimization of model hyperparameters according to the methods
described in Snoek et al. (2012) <doi:10.48550/arXiv.1206.2944>. The
package allows the user to run scoring function in parallel, save
intermediary results, and tweak other aspects of the process to fully
utilize the computing resources available to the user.
Author: Samuel Wilson [aut, cph],
Novica Nakov [aut, cre, cph]
Maintainer: Novica Nakov <nnovica@gmail.com>
Diff between ParBayesianOptimization versions 1.3.0 dated 2026-09-30 and 1.4.2 dated 2026-10-20
ParBayesianOptimization-1.3.0/ParBayesianOptimization/inst/doc/multiPointSampling.R |only ParBayesianOptimization-1.3.0/ParBayesianOptimization/man/figures/icon.png |only ParBayesianOptimization-1.3.0/ParBayesianOptimization/vignettes/UtilityFunctions.png |only ParBayesianOptimization-1.3.0/ParBayesianOptimization/vignettes/gpParBayesAnimationSmall.gif |only ParBayesianOptimization-1.3.0/ParBayesianOptimization/vignettes/icon.png |only ParBayesianOptimization-1.3.0/ParBayesianOptimization/vignettes/round1.png |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/DESCRIPTION | 44 - ParBayesianOptimization-1.4.2/ParBayesianOptimization/MD5 | 95 +- ParBayesianOptimization-1.4.2/ParBayesianOptimization/NAMESPACE | 93 +- ParBayesianOptimization-1.4.2/ParBayesianOptimization/NEWS.md | 49 + ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/SmallFuncs.R | 283 +++++-- ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/addIterations.R | 368 ++++++---- ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/applyNoise.R | 40 - ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/bayesOpt.R | 293 ++++--- ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/calcAcq.R | 21 ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/changeSaveFile.R | 16 ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/getBestPars.R | 19 ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/getLocalOptimums.R | 147 ++- ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/getNextParameters.R | 107 +- ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/plot.R | 105 +- ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/print.R | 40 - ParBayesianOptimization-1.4.2/ParBayesianOptimization/R/updateGP.R | 51 - ParBayesianOptimization-1.4.2/ParBayesianOptimization/README.md | 29 ParBayesianOptimization-1.4.2/ParBayesianOptimization/build/vignette.rds |binary ParBayesianOptimization-1.4.2/ParBayesianOptimization/inst/CITATION |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/inst/doc/functionMaximization.R | 4 ParBayesianOptimization-1.4.2/ParBayesianOptimization/inst/doc/functionMaximization.html | 14 ParBayesianOptimization-1.4.2/ParBayesianOptimization/inst/doc/functionMaximization.qmd | 9 ParBayesianOptimization-1.4.2/ParBayesianOptimization/inst/doc/multiPointSampling.html | 6 ParBayesianOptimization-1.4.2/ParBayesianOptimization/inst/doc/multiPointSampling.qmd | 16 ParBayesianOptimization-1.4.2/ParBayesianOptimization/inst/doc/tuningHyperparameters.R | 7 ParBayesianOptimization-1.4.2/ParBayesianOptimization/inst/doc/tuningHyperparameters.html | 4 ParBayesianOptimization-1.4.2/ParBayesianOptimization/inst/doc/tuningHyperparameters.qmd | 14 ParBayesianOptimization-1.4.2/ParBayesianOptimization/man/bayesOpt.Rd | 24 ParBayesianOptimization-1.4.2/ParBayesianOptimization/man/figures/UtilityFunctions.png |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/man/figures/gpParBayesAnimationSmall.gif |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/man/figures/logo.png |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/man/figures/round1.png |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/man/plot.bayesOpt.Rd | 5 ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-ExhaustedParameterSpace.R | 88 +- ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-bayesOpt1D.R | 223 ++++-- ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-bayesOpt2D.R | 116 +-- ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-calcAcq.R |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-changeSaveFile.R |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-checkParameters.R |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-errorHandling.R | 254 +++--- ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-errorHandlingInitialization.R | 232 ++---- ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-getBestPars.R |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-hyperparameterTuning.R | 307 ++++---- ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-inputValidation.R |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-iters.kTooHigh.R | 91 +- ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-otherHalting.R | 118 +-- ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-plotting.R | 93 +- ParBayesianOptimization-1.4.2/ParBayesianOptimization/tests/testthat/test-updateGP.R |only ParBayesianOptimization-1.4.2/ParBayesianOptimization/vignettes/functionMaximization.qmd | 9 ParBayesianOptimization-1.4.2/ParBayesianOptimization/vignettes/multiPointSampling.qmd | 16 ParBayesianOptimization-1.4.2/ParBayesianOptimization/vignettes/tuningHyperparameters.qmd | 14 57 files changed, 1945 insertions(+), 1519 deletions(-)
More information about ParBayesianOptimization at CRAN
Permanent link
Title: Palettes Generated from All "Harry Potter" Movies
Description: Implementation of characteristic palettes inspired by the Wizarding World and the Harry Potter movie franchise.
Author: Alejandro Jimenez Rico [aut, cre],
Alfredo Hernandez [ctb]
Maintainer: Alejandro Jimenez Rico <aljrico@gmail.com>
Diff between harrypotter versions 2.1.1 dated 2020-03-05 and 2.1.2 dated 2026-10-20
harrypotter-2.1.1/harrypotter/man/figures/hogwarts-scales.png |only harrypotter-2.1.1/harrypotter/man/figures/hp-scales.png |only harrypotter-2.1.1/harrypotter/man/figures/logo.jpg |only harrypotter-2.1.1/harrypotter/man/figures/logo.svg |only harrypotter-2.1.2/harrypotter/DESCRIPTION | 14 harrypotter-2.1.2/harrypotter/LICENSE | 4 harrypotter-2.1.2/harrypotter/MD5 | 27 harrypotter-2.1.2/harrypotter/NAMESPACE | 22 harrypotter-2.1.2/harrypotter/NEWS.md |only harrypotter-2.1.2/harrypotter/R/data.R | 38 harrypotter-2.1.2/harrypotter/R/hp_palette.R | 430 ++++------ harrypotter-2.1.2/harrypotter/man/hp.Rd | 12 harrypotter-2.1.2/harrypotter/man/hp.map.Rd | 14 harrypotter-2.1.2/harrypotter/man/hp_palettes.Rd | 4 harrypotter-2.1.2/harrypotter/man/scale_hp.Rd | 51 - harrypotter-2.1.2/harrypotter/tests/testthat.R | 8 harrypotter-2.1.2/harrypotter/tests/testthat/test-length.R | 12 17 files changed, 304 insertions(+), 332 deletions(-)
More information about DistributionalDDA at CRAN
Permanent link
Title: Modern Base-R Functions
Description: Includes modern base-R functions. Functions beginning with p_ are wrapper functions for existing base-R functions, supporting native piping. Other functions are wrapper functions for core base-R features, including bracket notation and dollar-sign notation. base_match() and base_when() mimic case_match() and case_when() from 'dplyr' but return a factor by default with levels ordered according to user input. et() mimics count() from 'dplyr'.
Author: Yea-Hung Chen [aut, cre]
Maintainer: Yea-Hung Chen <yea-hung.chen@ucsf.edu>
Diff between baseverse versions 0.1.4 dated 2026-04-28 and 0.1.5 dated 2026-10-20
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++++----------- NAMESPACE | 2 ++ R/bracket.r | 15 +++------------ R/col_bracket.r |only R/dollar.r | 3 +++ R/row_bracket.r |only README.md | 40 ++++++++++++++++++---------------------- build/vignette.rds |binary inst/doc/introduction.html | 15 ++++++++------- inst/doc/introduction.rmd | 8 ++++---- man/bracket.Rd | 8 ++------ man/col_bracket.Rd |only man/dollar.Rd | 3 +++ man/row_bracket.Rd |only vignettes/introduction.rmd | 8 ++++---- 16 files changed, 66 insertions(+), 70 deletions(-)
Title: Create Metrics Actigraphy and Activity Analysis
Description: Provides functions for calibrating, counting, and summarizing
actigraphy and activity data into specific metrics and sleep measures.
The metrics include activity counts, step counts, activity index,
Monitor Independent Movement Summary Unit (MIMS), mean amplitude
deviation (MAD), and provides wrappers for sleep estimation from
activity counts using Tudor-Locke (2014) <doi:10.1139/apnm-2013-0173> and
Sadeh (1994) <doi:10.1093/sleep/17.3.201>.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between actimetrics versions 0.4.0 dated 2026-09-17 and 0.9.0 dated 2026-10-20
DESCRIPTION | 15 ++- MD5 | 56 ++++++++------ NAMESPACE | 2 NEWS.md | 97 +++++++++++++++++++++++++ R/aaa_utils.R | 26 ++++++ R/ab_calculate_counts.R | 104 ++++++++++++++++++++++++++- R/acti_calculate_stepcount.R | 54 ++++---------- R/acti_calculate_walking.R | 70 ++++++++++-------- R/acti_count_measures.R | 80 ++++++++++++++++---- R/acti_process.R | 69 ++++++++++++++++-- R/acti_process_study.R |only R/calculate_measures.R | 115 +++++++++++++++++++++--------- R/calibrate.R | 2 R/mims_helpers.R | 18 ++-- R/standardize_for_sleepr.R | 15 +++ R/tudor_lock_helper_functions.R |only README.md | 7 + build/partial.rdb |only man/acti_apply_tudor_locke.Rd |only man/acti_apply_tudor_locke_diary.Rd |only man/acti_calculate_ai.Rd |only man/acti_calculate_counts.Rd | 32 ++++++-- man/acti_calculate_measures.Rd | 20 ----- man/acti_calculate_sdt.Rd | 4 - man/acti_process.Rd | 37 +++++++-- man/acti_process_study.Rd |only man/py_acti_calculate_forest.Rd | 6 + man/py_acti_calculate_stepcount.Rd | 4 - tests/testthat/test-counts-wear-process.R | 66 ++++++++++++++++- tests/testthat/test-coverage-drivers.R | 88 +++++++++++++--------- tests/testthat/test-regressions.R |only tests/testthat/test-step-walking.R | 27 +++++-- tests/testthat/test-summary.R | 53 +++++++++++-- 33 files changed, 802 insertions(+), 265 deletions(-)
More information about ggmGraphEditor at CRAN
Permanent link
Title: Tree Crown Segmentation in Airborne LiDAR Point Clouds
Description: Provides a function that performs the adaptive mean shift
algorithm for individual tree crown delineation in 3D point clouds as
proposed by Ferraz et al. (2016) <doi:10.1016/j.rse.2016.05.028>, as
well as supporting functions.
Author: Leon Steinmeier [aut] ,
Timon Miesner [cre, aut] ,
Nikolai Knapp [aut]
Maintainer: Timon Miesner <timon.miesner@thuenen.de>
Diff between crownsegmentr versions 1.1.1 dated 2026-09-22 and 1.1.3 dated 2026-10-20
DESCRIPTION | 8 +- MD5 | 18 ++--- NEWS.md | 8 ++ R/li_diameter_raster.R | 4 - R/watershed_diameter_raster.R | 6 - README.md | 16 ++++- inst/CITATION | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test-li_diameter_raster.R | 94 +++++++++++++++--------------- tests/testthat/test-segment_tree_crowns.R | 4 - 10 files changed, 90 insertions(+), 70 deletions(-)
Title: Working with Choice Data
Description: Offers a set of objects tailored to simplify working with choice
data. It enables the computation of choice probabilities and the
likelihood of various types of choice models based on given data.
Author: Lennart Oelschlaeger [aut, cre]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between choicedata versions 0.2.0 dated 2026-09-15 and 0.2.1 dated 2026-10-20
DESCRIPTION | 12 +++--- MD5 | 28 +++++++------- NAMESPACE | 32 ++++++++++------ NEWS.md | 7 +++ R/choice_covariates.R | 6 ++- R/choice_effects.R | 22 +++++++++-- R/choice_formula.R | 5 +- R/choice_parameters.R | 4 +- R/choice_probabilities.R | 2 - README.md | 27 ++++++-------- build/partial.rdb |binary inst/REFERENCES.bib | 66 +++++++++++++++-------------------- man/choice_formula.Rd | 5 +- man/choice_parameters.Rd | 2 - tests/testthat/test-choice_effects.R | 25 +++++++++++-- 15 files changed, 143 insertions(+), 100 deletions(-)
Title: Constrained Generalized Additive Model
Description: A constrained generalized additive model is fitted by the cgam routine. Given a set of predictors, each of which may have a shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The ShapeSelect routine chooses a subset of predictor variables and describes the component relationships with the response. For each predictor, the user needs only specify a set of possible shape or order restrictions. A model selection method chooses the shapes and orderings of the relationships as well as the variables. The cone information criterion (CIC) is used to select the best combination of variables and shapes. A genetic algorithm may be used when the set of possible models is large. In addition, the cgam routine implements a two-dimensional isotonic regression using warped-plane splines without additivity assumptions. It can also fit a convex or concave regression surface with [...truncated...]
Author: Mary Meyer [aut],
Xiyue Liao [aut, cre]
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between cgam versions 1.32 dated 2026-03-05 and 1.33 dated 2026-10-20
ChangeLog | 3 +++ DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 2 +- R/cgam.R | 33 ++++++++++++++++++++++----------- 5 files changed, 35 insertions(+), 21 deletions(-)
Title: B-Spline Interpolation and Regression
Description: Build and use B-splines for interpolation and regression.
In case of regression, equality constraints as well as monotonicity
and/or positivity of B-spline weights can be imposed. Moreover,
knot positions can be on regular grid or be part of
optimized parameters too (in addition to the spline weights).
For this end, 'bspline' is able to calculate
Jacobian of basis vectors as function of knot positions. User is provided with
functions calculating spline values at arbitrary points. These
functions can be differentiated and integrated to obtain B-splines calculating
derivatives/integrals at any point. B-splines of this package can
simultaneously operate on a series of curves sharing the same set of
knots. 'bspline' is written with concern about computing
performance that's why the basis and Jacobian calculation is implemented in C++.
The rest is implemented in R but without notable impact on computing speed.
Author: Serguei Sokol [aut, cre]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between bspline versions 2.5.1 dated 2026-01-27 and 2.6.0 dated 2026-10-20
DESCRIPTION | 8 - MD5 | 28 ++--- NAMESPACE | 12 +- NEWS.md | 8 + R/RcppExports.R | 90 +++++++++++++++- R/bspline.R | 57 +++++++--- inst/unitTests/runit.bspline.R | 77 ++++++++++++++ man/bsp.Rd | 7 - man/bspline.Rd | 5 man/dparr.Rd |only man/par2bsp.Rd | 14 ++ man/parr.Rd | 24 +++- man/pjacw.Rd |only man/smbsp.Rd | 5 src/RcppExports.cpp | 39 ++++++- src/bspline.cpp | 221 +++++++++++++++++++++++++++++++++++++++-- 16 files changed, 531 insertions(+), 64 deletions(-)
Title: Write Printed Output of R Objects to Log Files
Description: Provides writeLog(), a small helper that writes the printed
output of a named list of R objects to a text file in a log directory,
one element after another, each preceded by its list name as a heading.
Supports versioned file names and appending to an existing log file.
Author: Jeff Wu [aut, cre]
Maintainer: Jeff Wu <zifan.jeffwu@gmail.com>
Diff between writeLog versions 0.1.0 dated 2026-10-15 and 0.1.1 dated 2026-10-20
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NEWS.md | 5 +++++ README.md | 21 +++++++++++++++++---- 4 files changed, 31 insertions(+), 13 deletions(-)
Title: Flags Spatial Errors in Biological Collection Data Using
Specialists' Information
Description: Automatically flags common spatial errors in biological collection data using metadata and specialists' information. RuHere implements a workflow to manage occurrence data through six steps: dataset merging, metadata flagging, validation against expert-derived distribution maps, visualization of flagged records, and sampling bias exploration. It specifically integrates specialist-curated range information to identify geographic errors and introductions that often escape standard automated validation procedures. For details on the methodology, see: Trindade & Caron (2026) <doi:10.64898/2026.02.02.703373>.
Author: Weverton C. F. Trindade [aut, cre] ,
Fernanda S. Caron [aut]
Maintainer: Weverton C. F. Trindade <wevertonf1993@gmail.com>
Diff between RuHere versions 1.1.0 dated 2026-08-27 and 1.1.1 dated 2026-10-20
RuHere-1.1.0/RuHere/inst/extdata/datasets/florabr/393.420/CompleteBrazilianFlora.rds |only RuHere-1.1.1/RuHere/DESCRIPTION | 10 RuHere-1.1.1/RuHere/MD5 | 59 ++-- RuHere-1.1.1/RuHere/NEWS.md | 14 RuHere-1.1.1/RuHere/R/cite_datapaper.R | 6 RuHere-1.1.1/RuHere/R/faunabr_here.R | 7 RuHere-1.1.1/RuHere/R/flag_consensus.R | 10 RuHere-1.1.1/RuHere/R/flag_geo_moran.R | 2 RuHere-1.1.1/RuHere/R/florabr_here.R | 12 RuHere-1.1.1/RuHere/R/format_columns.R | 2 RuHere-1.1.1/RuHere/R/get_datapaper.R | 94 ++++++ RuHere-1.1.1/RuHere/R/get_env_bins.R | 34 +- RuHere-1.1.1/RuHere/R/ggmap_here.R | 15 + RuHere-1.1.1/RuHere/R/helpers.R |only RuHere-1.1.1/RuHere/R/map_here.R | 12 RuHere-1.1.1/RuHere/R/remove_flagged.R | 147 +++++----- RuHere-1.1.1/RuHere/R/request_gbif_specieslist.R | 21 + RuHere-1.1.1/RuHere/R/spatial_kde.R | 4 RuHere-1.1.1/RuHere/R/standardize_countries.R | 21 + RuHere-1.1.1/RuHere/R/summarize_flags.R | 2 RuHere-1.1.1/RuHere/inst/doc/flagging_records.html | 6 RuHere-1.1.1/RuHere/inst/doc/obtaining_data.Rmd | 4 RuHere-1.1.1/RuHere/inst/doc/obtaining_data.html | 8 RuHere-1.1.1/RuHere/inst/doc/sampling_bias.html | 42 +- RuHere-1.1.1/RuHere/inst/extdata/datasets/florabr/393.420/CompleteBrazilianFlora.gz |only RuHere-1.1.1/RuHere/man/faunabr_here.Rd | 7 RuHere-1.1.1/RuHere/man/flag_consensus.Rd | 6 RuHere-1.1.1/RuHere/man/florabr_here.Rd | 7 RuHere-1.1.1/RuHere/man/get_datapaper.Rd | 6 RuHere-1.1.1/RuHere/man/ggmap_here.Rd | 5 RuHere-1.1.1/RuHere/man/map_here.Rd | 6 RuHere-1.1.1/RuHere/vignettes/obtaining_data.Rmd | 4 32 files changed, 412 insertions(+), 161 deletions(-)
Title: Download and Read Brazilian Meteorological Data from INMET
Description: Automates the download and processing of historical hourly
weather data from automatic stations of the Brazilian National Institute
of Meteorology (INMET). It provides the official station catalogue with
an offline snapshot and nearest-station search, validated and resumable
downloads that detect updated archives, and a fast parser for the
formatting and encoding inconsistencies of raw CSV files across years. It
returns analysis-ready data frames with standardized column names and UTC
timestamps. It flags implausible values with transparent quality-control
checks, reports data completeness, and builds daily summaries in each
station's local time with explicit rules for incomplete days. Data are
retrieved from <https://portal.inmet.gov.br/dadoshistoricos> and
<https://apitempo.inmet.gov.br/estacoes/T>.
Author: Rodrigo Fonseca Villa [aut, cre]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>
Diff between rmet versions 0.2.0 dated 2026-09-21 and 0.3.0 dated 2026-10-20
rmet-0.2.0/rmet/R/utils.R |only rmet-0.3.0/rmet/DESCRIPTION | 29 rmet-0.3.0/rmet/MD5 | 91 +- rmet-0.3.0/rmet/NAMESPACE | 6 rmet-0.3.0/rmet/NEWS.md | 164 +++- rmet-0.3.0/rmet/R/cache.R |only rmet-0.3.0/rmet/R/completeness.R |only rmet-0.3.0/rmet/R/daily.R |only rmet-0.3.0/rmet/R/data.R | 25 rmet-0.3.0/rmet/R/download.R | 463 +++++++----- rmet-0.3.0/rmet/R/get.R | 117 +-- rmet-0.3.0/rmet/R/parse.R |only rmet-0.3.0/rmet/R/qc.R |only rmet-0.3.0/rmet/R/read.R | 718 +++++++------------ rmet-0.3.0/rmet/R/rmet-package.R |only rmet-0.3.0/rmet/R/spatial.R |only rmet-0.3.0/rmet/R/stations.R | 114 ++- rmet-0.3.0/rmet/R/timezone.R |only rmet-0.3.0/rmet/R/validate.R |only rmet-0.3.0/rmet/README.md | 197 ++--- rmet-0.3.0/rmet/build/vignette.rds |binary rmet-0.3.0/rmet/data/rmet_example.rda |binary rmet-0.3.0/rmet/inst/CITATION | 2 rmet-0.3.0/rmet/inst/WORDLIST | 32 rmet-0.3.0/rmet/inst/doc/daily-data.R |only rmet-0.3.0/rmet/inst/doc/daily-data.Rmd |only rmet-0.3.0/rmet/inst/doc/daily-data.html |only rmet-0.3.0/rmet/inst/doc/rmet-intro.R | 265 +------ rmet-0.3.0/rmet/inst/doc/rmet-intro.Rmd | 533 ++++---------- rmet-0.3.0/rmet/inst/doc/rmet-intro.html | 576 ++++----------- rmet-0.3.0/rmet/inst/extdata/stations.csv | 789 +++++++++++++++++---- rmet-0.3.0/rmet/man/inmet_as_sf.Rd |only rmet-0.3.0/rmet/man/inmet_cache_clear.Rd | 5 rmet-0.3.0/rmet/man/inmet_cache_status.Rd | 11 rmet-0.3.0/rmet/man/inmet_completeness.Rd |only rmet-0.3.0/rmet/man/inmet_daily.Rd |only rmet-0.3.0/rmet/man/inmet_download.Rd | 47 - rmet-0.3.0/rmet/man/inmet_extract.Rd | 16 rmet-0.3.0/rmet/man/inmet_get.Rd | 39 - rmet-0.3.0/rmet/man/inmet_nearest.Rd |only rmet-0.3.0/rmet/man/inmet_qc.Rd |only rmet-0.3.0/rmet/man/inmet_read.Rd | 73 + rmet-0.3.0/rmet/man/inmet_stations.Rd | 12 rmet-0.3.0/rmet/man/inmet_timezone.Rd |only rmet-0.3.0/rmet/man/rmet-package.Rd | 20 rmet-0.3.0/rmet/man/rmet_example.Rd | 18 rmet-0.3.0/rmet/tests/testthat/helper-data.R | 52 + rmet-0.3.0/rmet/tests/testthat/test-completeness.R |only rmet-0.3.0/rmet/tests/testthat/test-daily.R |only rmet-0.3.0/rmet/tests/testthat/test-download.R | 152 ++++ rmet-0.3.0/rmet/tests/testthat/test-edge-cases.R |only rmet-0.3.0/rmet/tests/testthat/test-parse.R |only rmet-0.3.0/rmet/tests/testthat/test-qc.R |only rmet-0.3.0/rmet/tests/testthat/test-read.R | 51 - rmet-0.3.0/rmet/tests/testthat/test-spatial.R |only rmet-0.3.0/rmet/tests/testthat/test-stations.R | 55 + rmet-0.3.0/rmet/tests/testthat/test-timezone.R |only rmet-0.3.0/rmet/tests/testthat/test-utils.R | 2 rmet-0.3.0/rmet/vignettes/daily-data.Rmd |only rmet-0.3.0/rmet/vignettes/rmet-intro.Rmd | 533 ++++---------- 60 files changed, 2755 insertions(+), 2452 deletions(-)
Title: Clinical Reference Interval Estimation with Reference Interval
Network (RINet)
Description: Predicts statistics of a reference distribution from a mixture of raw clinical measurements (healthy and pathological). Uses pretrained CNN models to estimate the mean, standard deviation, and reference fraction from 1D or 2D sample data. Methods are described in LeBien, Velev, and Roche-Lima (2026) "RINet: synthetic data training for indirect estimation of clinical reference distributions" <doi:10.1016/j.jbi.2026.104980>.
Author: Jack LeBien [aut, cre]
Maintainer: Jack LeBien <jlebien@abartyshealth.com>
Diff between rinet versions 0.1.1 dated 2026-02-23 and 0.2.0 dated 2026-10-20
rinet-0.1.1/rinet/inst/models/rinet_1d.keras |only rinet-0.1.1/rinet/inst/models/rinet_2d.keras |only rinet-0.1.1/rinet/inst/models/scaler_1d.pkl |only rinet-0.1.1/rinet/inst/models/scaler_2d.pkl |only rinet-0.1.1/rinet/man/dot-load_scaler.Rd |only rinet-0.2.0/rinet/DESCRIPTION | 18 - rinet-0.2.0/rinet/MD5 | 30 +- rinet-0.2.0/rinet/NAMESPACE | 10 rinet-0.2.0/rinet/NEWS.md |only rinet-0.2.0/rinet/R/model_functions.R | 260 +++++++++++-------------- rinet-0.2.0/rinet/R/rinet-package.R |only rinet-0.2.0/rinet/R/zzz.R | 107 ---------- rinet-0.2.0/rinet/build |only rinet-0.2.0/rinet/inst/models/rinet_1d_v2.0.pt |only rinet-0.2.0/rinet/inst/models/rinet_1d_v2.1.pt |only rinet-0.2.0/rinet/inst/models/rinet_2d_v2.0.pt |only rinet-0.2.0/rinet/man/dot-inverse_transform.Rd |only rinet-0.2.0/rinet/man/dot-load_model.Rd | 6 rinet-0.2.0/rinet/man/predict_rinet.Rd | 18 + rinet-0.2.0/rinet/man/predict_rinet_1d.Rd | 8 rinet-0.2.0/rinet/man/predict_rinet_2d.Rd | 1 rinet-0.2.0/rinet/man/rinet-package.Rd | 71 +++--- 22 files changed, 223 insertions(+), 306 deletions(-)
More information about regsensitivity at CRAN
Permanent link
Title: Visualise OMOP Results using 'shiny' Applications
Description: Visualise results obtained from analysing data mapped to the
Observational Medical Outcomes Partnership (OMOP) common data model using
'shiny' applications.
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Edward Burn [ctb] ,
Nuria Mercade-Besora [ctb] ,
Elin Rowlands [ctb] ,
Cecilia Campanile [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
This is a re-admission after prior archival of version 0.7.0 dated 2026-02-09
Diff between OmopViewer versions 0.7.0 dated 2026-02-09 and 0.8.0 dated 2026-10-20
DESCRIPTION | 13 MD5 | 134 +- NAMESPACE | 28 NEWS.md | 90 - R/about.R | 49 R/appDynamic.R | 594 +++++----- R/appStatic.R | 788 +++++++------- R/background.R | 112 +- R/buttons.R | 245 ++-- R/classes.R | 186 +-- R/createServer.R | 395 +++---- R/createUi.R | 407 +++---- R/data.R | 34 R/defaultPanels.R | 256 ++-- R/functions.R | 907 ++++++++-------- R/omopViewer-package.R | 22 R/populatePanelDetailsOptions.R | 600 +++++----- R/readme.R | 42 R/report.R | 320 ++--- R/styleCode.R | 20 R/summary.R | 38 R/survivalPanel.R |only R/sysdata.rda |binary R/theme.R | 146 +- R/utilities.R | 98 - README.md | 251 ++-- build/vignette.rds |binary data/omopViewerPanels.rda |binary data/omopViewerResults.rda |binary inst/brand/ohdsi.yml | 48 inst/brand/sad_robot.yml | 38 inst/css |only inst/doc/dynamic_app.R | 24 inst/doc/dynamic_app.Rmd | 66 - inst/doc/dynamic_app.html | 760 ++++++------- inst/doc/edit_static_content.R | 116 +- inst/doc/edit_static_content.Rmd | 220 +-- inst/doc/edit_static_content.html | 907 ++++++++-------- inst/doc/export_static_app.R | 104 - inst/doc/export_static_app.Rmd | 270 ++-- inst/doc/export_static_app.html | 1643 ++++++++++++++--------------- inst/functions.R | 907 ++++++++-------- inst/logos/darwin_logo.svg |only inst/logos/ohdsi_logo.svg | 1784 ++++++++++++++++---------------- man/OmopViewer-package.Rd | 73 - man/defaultPanels.Rd | 38 man/exportStaticApp.Rd | 157 +- man/figures/hexsticker.png |only man/figures/lifecycle-deprecated.svg | 42 man/figures/lifecycle-experimental.svg | 42 man/figures/lifecycle-stable.svg | 58 - man/figures/lifecycle-superseded.svg | 42 man/getPanel.Rd | 46 man/launchDynamicApp.Rd | 28 man/omopViewerPanels.Rd | 40 man/omopViewerResults.Rd | 40 man/omopViewerThemes.Rd | 40 man/panelDetailsFromResult.Rd | 52 tests/testthat.R | 24 tests/testthat/_snaps/appStatic.md | 50 tests/testthat/test-appStatic.R | 573 ++++++---- tests/testthat/test-background.R | 108 - tests/testthat/test-choices.R | 372 +++--- tests/testthat/test-functions.R | 30 tests/testthat/test-packagesSupported.R | 14 tests/testthat/test-readme.R | 54 tests/testthat/test-summary.R | 380 +++--- vignettes/dynamic_app.Rmd | 66 - vignettes/edit_static_content.Rmd | 220 +-- vignettes/export_static_app.Rmd | 270 ++-- 70 files changed, 7871 insertions(+), 7650 deletions(-)
Title: Assessing the Integrity and Trustworthiness of Clinical Trials
Data
Description: The integrity package implements the IPD Integrity Tool, a
structured and transparent framework for evaluating the integrity of
individual participant data (IPD) from randomised trials (see Hunter et
al. (2024) <doi:10.1002/jrsm.1738> and <doi:10.1002/jrsm.1739>). It
supports users to identify potential issues, such as unusual data
patterns, implausible values, lack of expected correlations, date
violations, and inconsistencies. The package provides reproducible
workflows for screening, documenting and summarising integrity concerns,
and may be applied by evidence synthesists, editors, and others to
determine whether a randomised trial may be considered sufficiently
trustworthy to contribute to the evidence base that informs policy and
practice.
Author: Sol Libesman [aut, cre],
David Nguyen [aut],
Dario Strbenac [aut],
Jie Kang [aut],
Anna Lene Seidler [aut],
Kylie Hunter [aut]
Maintainer: Sol Libesman <sol.libesman@sydney.edu.au>
Diff between integrity versions 1.0.2 dated 2026-10-19 and 1.0.3 dated 2026-10-20
DESCRIPTION | 8 - MD5 | 19 +-- NEWS.md | 15 ++ R/checks.R | 110 ++++++++---------- R/run_checks.R | 34 +++++ inst/doc/integrity.Rmd | 7 - inst/doc/integrity.html | 210 +++++++++++++++++++----------------- man/run_checks.Rd | 20 +++ tests/regression.R | 9 - tests/testthat/test-baseline-runs.R |only vignettes/integrity.Rmd | 7 - 11 files changed, 261 insertions(+), 178 deletions(-)
Title: Access to Spanish Household Income Distribution Atlas Data
Description: Provides access to granular socioeconomic indicators from the
Spanish Statistical Office (INE) Household Income Distribution Atlas.
The package downloads and processes data from a companion 'GitHub'
repository (<https://github.com/pablogguz/ineAtlas.data/>) which
contains processed versions of the official INE Atlas data. Functions
are provided to fetch data at multiple geographic levels
(municipalities, districts, and census tracts), including income
indicators, demographic characteristics, and inequality metrics. The
data repository is updated every year when new releases are published
by INE.
Author: Pablo Garcia Guzman [aut, cre, cph]
Maintainer: Pablo Garcia Guzman <garciagp@ebrd.com>
This is a re-admission after prior archival of version 0.1.4 dated 2025-09-11
Diff between ineAtlas versions 0.1.4 dated 2025-09-11 and 0.2.1 dated 2026-10-20
ineAtlas-0.1.4/ineAtlas/inst/doc/ineAtlas-income-voting.R |only ineAtlas-0.1.4/ineAtlas/inst/doc/mapping-with-ineatlas.R |only ineAtlas-0.2.1/ineAtlas/DESCRIPTION | 8 ineAtlas-0.2.1/ineAtlas/MD5 | 47 ineAtlas-0.2.1/ineAtlas/NAMESPACE | 38 ineAtlas-0.2.1/ineAtlas/NEWS.md | 13 ineAtlas-0.2.1/ineAtlas/R/get_atlas.r | 302 +-- ineAtlas-0.2.1/ineAtlas/R/get_census.r | 248 +- ineAtlas-0.2.1/ineAtlas/R/get_tract_geom.r | 226 +- ineAtlas-0.2.1/ineAtlas/README.md | 154 - ineAtlas-0.2.1/ineAtlas/build/vignette.rds |binary ineAtlas-0.2.1/ineAtlas/inst/WORDLIST | 46 ineAtlas-0.2.1/ineAtlas/inst/doc/ineAtlas-income-voting.Rmd | 36 ineAtlas-0.2.1/ineAtlas/inst/doc/ineAtlas-income-voting.html | 989 +++++----- ineAtlas-0.2.1/ineAtlas/inst/doc/mapping-with-ineatlas.Rmd | 95 ineAtlas-0.2.1/ineAtlas/inst/doc/mapping-with-ineatlas.html | 1047 +++++------ ineAtlas-0.2.1/ineAtlas/man/get_atlas.Rd | 3 ineAtlas-0.2.1/ineAtlas/man/get_census.Rd | 3 ineAtlas-0.2.1/ineAtlas/man/get_tract_geom.Rd | 7 ineAtlas-0.2.1/ineAtlas/tests/spelling.R | 6 ineAtlas-0.2.1/ineAtlas/tests/testthat/test-get_atlas.r | 505 ++--- ineAtlas-0.2.1/ineAtlas/tests/testthat/test-get_census.r |only ineAtlas-0.2.1/ineAtlas/tests/testthat/test-get_tract_geom.r | 119 - ineAtlas-0.2.1/ineAtlas/vignettes/figures |only ineAtlas-0.2.1/ineAtlas/vignettes/ineAtlas-income-voting.Rmd | 36 ineAtlas-0.2.1/ineAtlas/vignettes/mapping-with-ineatlas.Rmd | 95 26 files changed, 2101 insertions(+), 1922 deletions(-)
Title: Tools for Creating Publication-Ready Regression Tables
Description: Simplifies regression modelling in R by integrating modelling, diagnostics,
visualisation, and summary tools into a cohesive, user-friendly
interface. Designed to be accessible for researchers, particularly those in
Low- and Middle-Income Countries (LMIC). Supports logistic, linear, count,
matched case-control, ordinal, multinomial, multilevel, Cox, parametric
survival, and competing-risk regression, and absolute risk differences with
the number needed to treat. Built upon widely accepted
statistical methods, including logistic regression
(Hosmer et al. 2013, ISBN:9781118548429), log-binomial regression
(Spiegelman and Hertzmark 2005 <doi:10.1093/aje/kwi188>),
Firth penalized logistic regression (Firth 1993 <doi:10.1093/biomet/80.1.27>),
Poisson and robust Poisson regression (Zou 2004 <doi:10.1093/aje/kwh090>),
negative binomial regression (Hilbe 2011, ISBN:9780521179515), Cox proportional
hazards regression, parametric survival regression, causal mediation
analysis, [...truncated...]
Author: Rubeshkumar Polani [aut, cre] ,
Salin K Eliyas [aut] ,
Manikandanesan Sakthivel [aut] ,
Mogan Kaviprawin [aut] ,
Yuvaraj Krishnamoorthy [aut] ,
Marie Gilbert Majella [aut]
Maintainer: Rubeshkumar Polani <rubesh@thinkdenominator.com>
Diff between gtregression versions 1.1.0 dated 2026-08-21 and 1.2.0 dated 2026-10-20
DESCRIPTION | 41 MD5 | 374 NAMESPACE | 15 NEWS.md | 304 R/accessors.R | 4 R/app-checks.R |only R/app-environment-data.R |only R/app-guard.R |only R/app-reference-levels.R | 17 R/builders-flex.R | 40 R/builders-gt.R | 10 R/check_convergence.R | 4 R/check_ph.R | 132 R/compare_models.R | 51 R/competing_risk_reg.R |only R/conditional_logit_reg.R |only R/cox_reg.R | 680 + R/cuminc_plot.R |only R/data-prep-operations.R | 123 R/data-structure.R |only R/datasets.R | 35 R/descriptive_table.R | 162 R/fit_multi_model.R | 38 R/fit_uni_model.R | 77 R/footnotes.R | 105 R/forest_df.R | 278 R/forest_reg.R | 226 R/gtregression_addin.R |only R/gtregression_app.R | 94 R/helpers-abbreviations.R | 76 R/helpers-display.R | 185 R/helpers-strata-survival.R | 340 R/helpers-strata.R | 73 R/helpers-tidy.R | 361 R/helpers_validation.R | 365 R/identify_confounder.R | 228 R/import_data.R |only R/interaction_models.R | 95 R/km_plot.R | 35 R/km_risk_table.R | 5 R/logrank_test.R | 8 R/mediation_analysis.R | 144 R/merge_tables.R | 954 +- R/mod-data-prep.R | 315 R/modify_table.R | 432 R/multi_reg.R | 35 R/multilevel_reg.R |only R/multinomial_reg.R |only R/ordinal_reg.R |only R/plot_cox_survival.R |only R/plot_reg.R | 368 R/plot_reg_combine.R | 300 R/plot_surv_fit.R | 6 R/print.R | 5 R/risk_difference.R |only R/rmst_table.R | 112 R/save_functions.R | 72 R/select_models.R | 109 R/stratified_multi_reg.R | 49 R/stratified_uni_reg.R | 35 R/surv_model_compare.R | 5 R/surv_predict.R | 7 R/surv_reg.R | 108 R/survival_prob.R | 5 R/survival_quantiles.R | 5 R/survival_summary.R | 8 R/uni_reg.R | 146 R/utils-theme.R | 3 R/utils.R | 104 README.md | 374 build/vignette.rds |binary data/data_competing_risk.rda |only inst/WORDLIST | 191 inst/doc/causal-mediation.R | 6 inst/doc/causal-mediation.Rmd | 6 inst/doc/causal-mediation.html | 130 inst/doc/choose-model.Rmd |only inst/doc/choose-model.html |only inst/doc/confounding-interaction.R | 2 inst/doc/confounding-interaction.Rmd | 2 inst/doc/confounding-interaction.html | 608 - inst/doc/customize-export.R | 2 inst/doc/customize-export.Rmd | 33 inst/doc/customize-export.html | 72 inst/doc/descriptive-tables.R | 4 inst/doc/descriptive-tables.Rmd | 4 inst/doc/descriptive-tables.html | 209 inst/doc/diagnostics-selection.R | 6 inst/doc/diagnostics-selection.Rmd | 17 inst/doc/diagnostics-selection.html | 748 - inst/doc/function-options.Rmd | 233 inst/doc/function-options.html | 866 + inst/doc/gtregression-app.Rmd | 167 inst/doc/gtregression-app.html | 224 inst/doc/gtregression-intro.Rmd | 6 inst/doc/gtregression-intro.html | 19 inst/doc/merge-tables.R |only inst/doc/merge-tables.Rmd |only inst/doc/merge-tables.html |only inst/doc/regression-tables.R | 108 inst/doc/regression-tables.Rmd | 163 inst/doc/regression-tables.html | 568 - inst/doc/risk-difference.R |only inst/doc/risk-difference.Rmd |only inst/doc/risk-difference.html |only inst/doc/special-models.R |only inst/doc/special-models.Rmd |only inst/doc/special-models.html |only inst/doc/stratified-analysis.html | 10 inst/doc/survival-analysis.R | 20 inst/doc/survival-analysis.Rmd | 32 inst/doc/survival-analysis.html | 204 inst/doc/visualise-results.Rmd | 16 inst/doc/visualise-results.html | 120 inst/rstudio |only inst/shiny/app.R | 9847 ++++++++++++++++++++-- man/cash-.gtregression.Rd | 5 man/check_ph.Rd | 7 man/compare_models.Rd | 12 man/competing_risk_reg.Rd |only man/conditional_logit_reg.Rd |only man/cox_reg.Rd | 91 man/cuminc_plot.Rd |only man/data_competing_risk.Rd |only man/descriptive_table.Rd | 21 man/dot-strata_levels.Rd | 4 man/figures/home-forest.png |only man/figures/home-km.png |only man/figures/home-rd.png |only man/figures/home-table.png |only man/forest_df.Rd | 22 man/forest_reg.Rd | 11 man/gtregression_addin.Rd |only man/gtregression_app.Rd | 31 man/identify_confounder.Rd | 19 man/import_data.Rd |only man/interaction_models.Rd | 6 man/mediation_analysis.Rd | 14 man/merge_tables.Rd | 15 man/modify_table.Rd | 21 man/multi_reg.Rd | 16 man/multilevel_reg.Rd |only man/multinomial_reg.Rd |only man/ordinal_reg.Rd |only man/plot.gtregression_ph.Rd |only man/plot_cox_survival.Rd |only man/plot_reg_combine.Rd | 15 man/print.gtregression.Rd | 6 man/risk_difference.Rd |only man/rmst_table.Rd | 8 man/select_models.Rd | 11 man/stratified_multi_reg.Rd | 9 man/stratified_uni_reg.Rd | 9 man/surv_reg.Rd | 35 man/uni_reg.Rd | 19 tests/testthat/test-app-environment-data.R |only tests/testthat/test-app-history.R |only tests/testthat/test-app-prepare-task-dialog.R |only tests/testthat/test-app-reference-levels.R | 8 tests/testthat/test-app-role-safety.R |only tests/testthat/test-app-selection-continuity.R |only tests/testthat/test-app-shared-shell.R |only tests/testthat/test-app-stress.R |only tests/testthat/test-app-structure.R |only tests/testthat/test-app-trials.R |only tests/testthat/test-app-workbench-components.R |only tests/testthat/test-app-workbench-safety.R |only tests/testthat/test-check_collinearity.R | 4 tests/testthat/test-check_ph.R | 35 tests/testthat/test-compare_models.R | 4 tests/testthat/test-compat-null-default.R |only tests/testthat/test-competing_risk_reg.R |only tests/testthat/test-conditional_logit_reg.R |only tests/testthat/test-cox_reg.R | 215 tests/testthat/test-cuminc_plot.R |only tests/testthat/test-data-prep-operations.R | 20 tests/testthat/test-data-prep-quick-starts.R |only tests/testthat/test-data-prep-reproducibility.R |only tests/testthat/test-data-structure.R |only tests/testthat/test-data_competing_risk.R |only tests/testthat/test-fit_multi_model.R | 12 tests/testthat/test-fix-core-bare-names.R |only tests/testthat/test-fix-core-descriptive-import.R |only tests/testthat/test-fix-core-regression.R |only tests/testthat/test-fix-core-special.R |only tests/testthat/test-fix-integration.R |only tests/testthat/test-fix-output-forest-save.R |only tests/testthat/test-fix-output-merge.R |only tests/testthat/test-fix-output-modify.R |only tests/testthat/test-fix-output-plots.R |only tests/testthat/test-fix-survival-audit.R |only tests/testthat/test-forest-plot-special-models.R |only tests/testthat/test-forest_reg.R | 48 tests/testthat/test-gtregression_addin.R |only tests/testthat/test-gtregression_app.R | 217 tests/testthat/test-identify_confounder.R | 21 tests/testthat/test-import_data.R |only tests/testthat/test-merge_tables.R | 235 tests/testthat/test-modify_table.R | 122 tests/testthat/test-multi_reg.R | 27 tests/testthat/test-multilevel_reg.R |only tests/testthat/test-multinomial_reg.R |only tests/testthat/test-ordinal_reg.R |only tests/testthat/test-plot_cox_survival.R |only tests/testthat/test-plot_reg.R | 4 tests/testthat/test-plot_reg_combine.R | 99 tests/testthat/test-risk_difference-ecosystem.R |only tests/testthat/test-risk_difference.R |only tests/testthat/test-role-conflicts.R |only tests/testthat/test-save_functions.R | 58 tests/testthat/test-select_models.R | 3 tests/testthat/test-stratified_multi_reg.R | 10 tests/testthat/test-stratified_uni_reg.R | 6 tests/testthat/test-surv_reg.R | 28 tests/testthat/test-uni_reg.R | 68 tests/testthat/test-variable_labels.R | 4 vignettes/causal-mediation.Rmd | 6 vignettes/choose-model.Rmd |only vignettes/confounding-interaction.Rmd | 2 vignettes/customize-export.Rmd | 33 vignettes/descriptive-tables.Rmd | 4 vignettes/diagnostics-selection.Rmd | 17 vignettes/function-options.Rmd | 233 vignettes/gtregression-app.Rmd | 167 vignettes/gtregression-intro.Rmd | 6 vignettes/merge-tables.Rmd |only vignettes/regression-tables.Rmd | 163 vignettes/risk-difference.Rmd |only vignettes/special-models.Rmd |only vignettes/survival-analysis.Rmd | 32 vignettes/visualise-results.Rmd | 16 231 files changed, 20865 insertions(+), 4394 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] ,
Yves R. Sagaert [ctb]
Maintainer: Ivan Svetunkov <ivan@svetunkov.com>
Diff between greybox versions 2.0.9 dated 2026-10-02 and 2.0.11 dated 2026-10-20
DESCRIPTION | 10 - MD5 | 96 +++++----- NAMESPACE | 5 NEWS | 71 +++++++ R/RcppExports.R | 4 R/alaplace.R | 9 R/alm.R | 257 +++++++++++++++++----------- R/association.R | 6 R/bcnorm.R | 39 ++-- R/calm.R | 67 +++++-- R/coefbootstrap.R | 15 - R/cramer.R | 2 R/determination.R | 8 R/fnorm.R | 32 ++- R/gnorm.R | 48 ++--- R/graphmaker.R | 34 ++- R/greybox-package.R | 1 R/isFunctions.R | 4 R/laplace.R | 10 - R/logitnorm.R | 14 - R/mcor.R | 15 + R/methods.R | 394 +++++++++++++++++++++---------------------- R/pcor.R | 15 + R/pointLik.R | 82 +------- R/rectnorm.R | 8 R/rmcb.R | 69 ++++++- R/scaler.R | 92 ++++++---- R/spread.R | 19 -- R/stepwise.R | 14 + R/stick.R | 4 R/svet.R | 11 - R/tableplot.R | 6 R/temporaldummy.R | 171 +++++------------- R/xregExpander.R | 17 + R/xregTransformer.R | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/alm.html | 147 +++++++--------- inst/doc/greybox.html | 13 - inst/doc/maUsingGreybox.html | 14 - inst/doc/ro.html | 13 - man/alm.Rd | 13 - man/calm.Rd | 2 man/isFunctions.Rd | 2 man/plot.greybox.Rd | 6 man/predict.greybox.Rd | 6 man/rmcb.Rd | 22 ++ src/RcppExports.cpp | 18 + src/almLatent.cpp |only src/headers |only 50 files changed, 1090 insertions(+), 821 deletions(-)
Title: Functional Iterative Hierarchical Clustering
Description: Functional clustering aims to group curves exhibiting similar temporal behaviour and to obtain representative curves summarising the typical dynamics within each cluster. A key challenge in this setting is class imbalance, where some clusters contain substantially more curves than others, which can adversely affect clustering performance. While class imbalance has been extensively studied in supervised classification, it has received comparatively little attention in unsupervised clustering. This package implements functional iterative hierarchical clustering ('funIHC'), an adaptation of the iterative hierarchical clustering method originally developed for multivariate data, to the functional data setting. For further details, please see Higgins and Carey (2024) <doi:10.1007/s11634-024-00611-8>.
Author: Catherine Higgins [aut, cre],
Michelle Carey [aut]
Maintainer: Catherine Higgins <catherine.higgins@mu.ie>
Diff between funIHC versions 0.1.0 dated 2026-01-09 and 0.1.1 dated 2026-10-20
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Read and Write 'FreeSurfer' Neuroimaging File Formats
Description: Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ/NIFTI format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surfa [...truncated...]
Author: Tim Schaefer [aut, cre] ,
Van Essen Lab [cph] .),
Montreal Neurological Institute [cph] .)
Maintainer: Tim Schaefer <ts+code@rcmd.org>
Diff between freesurferformats versions 1.1.0 dated 2026-09-24 and 1.1.2 dated 2026-10-20
DESCRIPTION | 6 ++--- MD5 | 6 ++--- tests/testthat/test-vtk.R | 11 ++++++++-- tests/testthat/test-write_fs_transform.R | 34 ------------------------------- 4 files changed, 15 insertions(+), 42 deletions(-)
More information about freesurferformats at CRAN
Permanent link
Title: Linear p-Wasserstein Projections
Description: Performs Wasserstein projections from the predictive distributions of any model into the space of predictive distributions of linear models. We utilize L1 penalties to also reduce the complexity of the model space. This package employs the methods as described in Dunipace, Eric and Lorenzo Trippa (2020) <doi:10.48550/arXiv.2012.09999>.
Author: Eric Dunipace [aut, cre] ,
Clemens Schmid [ctb] ,
Espen Bernton [ctb] ,
Mathieu Gerber [ctb] ,
Pierre Jacob [ctb] ,
Bin Dai [ctb] ,
Jared Huling [ctb] ,
Yixuan Qiu [ctb] ,
Dominic Schuhmacher [ctb] ,
Nicolas Bonneel [ctb]
Maintainer: Eric Dunipace <edunipace@post.harvard.edu>
Diff between WpProj versions 0.3 dated 2026-10-06 and 0.3.1 dated 2026-10-20
DESCRIPTION | 14 MD5 | 46 NEWS.md | 6 R/W2IP.R | 34 R/W2L1.R | 4 R/WPL0.R | 164 +- R/WPVI.R | 7 R/WPremoveone.R | 2 R/WPsimulatedAnnealing.R | 896 ++++++++----- R/WPstepwise.R | 15 R/distanceCompare.R | 6 R/utils.R | 112 + inst/WORDLIST | 1 man/WpProj-package.Rd | 4 tests/testthat/test-W1L1.R | 1 tests/testthat/test-W2IP.R | 3 tests/testthat/test-WInftyL1.R | 1 tests/testthat/test-WPL0.R | 608 +++++---- tests/testthat/test-WPR2.R | 5 tests/testthat/test-WPSA.R | 90 - tests/testthat/test-WpSLIM.R | 5 tests/testthat/test-combinedistcompare.R | 1 tests/testthat/test-distanceCompare.R | 62 tests/testthat/test-xtyUpdate.R | 2053 ++++++++++++++++--------------- 24 files changed, 2434 insertions(+), 1706 deletions(-)
Title: Variable Selection using the Pivotal Information Criterion
Description: Sparse regression and classification via the Pivotal
Information Criterion (PIC), an alternative to the Bayesian
Information Criterion (BIC), cross-validation, and Lasso-based
tuning. The regularization parameter is selected from a pivotal
null-distribution statistic, eliminating the need for
cross-validation and yielding sharper support recovery. Provides
Fast Iterative Shrinkage-Thresholding Algorithm (FISTA)
optimization for the L1, Smoothly Clipped Absolute Deviation
(SCAD), and Minimax Concave Penalty (MCP) penalties across six
response distributions: Gaussian, binomial, Poisson, exponential,
Gumbel, and Cox. Under standard sparsity assumptions, the
selector achieves a phase transition for exact support recovery,
analogous to results in compressed sensing. See Sardy, van Cutsem
and van de Geer (2026) <doi:10.48550/arXiv.2603.04172>.
Author: Maxime van Cutsem [aut, cre],
Sylvain Sardy [aut]
Maintainer: Maxime van Cutsem <maxime.vancutsem@unige.ch>
Diff between picreg versions 0.1.4 dated 2026-07-20 and 0.2.0 dated 2026-10-20
DESCRIPTION | 14 - MD5 | 118 ++++++----- NAMESPACE | 2 NEWS.md | 127 ++++++++++++ R/RcppExports.R | 14 + R/assess.R | 20 + R/diagnostics.R | 157 +++++++++------ R/families.R | 36 +-- R/fista.R | 4 R/lambda-pdb.R | 85 +++++--- R/methods-picr.R | 61 ++++-- R/penalties.R | 8 R/picr.R | 207 +++++++++++++------- R/picreg-package.R | 1 R/plots.R | 2 R/prepareX.R | 84 ++++++-- R/survival.R | 82 ++------ R/validate.R |only README.md | 253 ++++++++++++++++++++----- inst/doc/vignette.R | 14 - inst/doc/vignette.Rmd | 96 ++++----- inst/doc/vignette.html | 125 ++++++------ man/assess.Rd | 10 man/check_X.Rd | 25 +- man/check_Xy.Rd | 11 - man/check_y.Rd | 3 man/coef.pic.Rd | 15 - man/concordance_index.Rd | 7 man/figures |only man/fista.Rd | 4 man/lambda_pdb.Rd | 45 ++-- man/pdb_asymptotic.Rd | 4 man/phase_transition.Rd | 30 +- man/pic.Rd | 55 +++-- man/pic_families.Rd | 6 man/pic_penalties.Rd | 4 man/plot.pic.pdb_asymptotic.Rd | 2 man/predict.pic.Rd | 7 man/print.pic.family.Rd | 2 src/RcppExports.cpp | 39 +++ src/cox.cpp | 60 +++-- src/cox.h | 8 src/cox_null_grad.cpp | 58 +++-- src/family_base.h | 26 ++ src/family_gumbel.cpp | 293 ++++++++++++++++++++++++----- src/family_poisson.cpp | 6 src/family_registry.cpp | 5 src/fista.cpp | 44 +++- src/fista_cox.cpp | 48 +--- src/lambda_max.cpp | 9 src/lambda_pdb.cpp | 71 +++++-- src/survival_metrics.cpp |only tests/testthat/test-assess.R | 12 + tests/testthat/test-cox-feature-effects.R | 19 + tests/testthat/test-cox.R | 50 ++++ tests/testthat/test-diagnostics.R |only tests/testthat/test-families.R | 104 ++++++++++ tests/testthat/test-input-validation.R | 80 +++++++ tests/testthat/test-lambda-pdb.R | 42 ++++ tests/testthat/test-pic-gaussian.R | 47 ++++ vignettes/phase_transition_comparaison.png |binary vignettes/vignette.Rmd | 96 ++++----- 62 files changed, 2067 insertions(+), 790 deletions(-)
Title: General Linear Mixed Models for Gene-Level Differential
Expression
Description: Using mixed effects models to analyse longitudinal gene expression can highlight differences between sample groups over time. The most widely used differential gene expression tools are unable to fit linear mixed effect models, and are less optimal for analysing longitudinal data. This package provides negative binomial and Gaussian mixed effects models to fit gene expression and other biological data across repeated samples. This is particularly useful for investigating changes in RNA-Sequencing gene expression between groups of individuals over time, as described in: Rivellese, F., Surace, A. E., Goldmann, K., Sciacca, E., Cubuk, C., Giorli, G., ... Lewis, M. J., & Pitzalis, C. (2022) Nature medicine <doi:10.1038/s41591-022-01789-0>.
Author: Myles Lewis [aut, cre] ,
Katriona Goldmann [aut] ,
Elisabetta Sciacca [aut] ,
Cankut Cubuk [ctb] ,
Anna Surace [ctb] ,
David Rios Santini [ctb]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
Diff between glmmSeq versions 0.5.7 dated 2025-10-02 and 0.5.8 dated 2026-10-20
DESCRIPTION | 23 MD5 | 28 NAMESPACE | 4 NEWS.md | 8 R/fcPlot.R | 2 R/ggmodelPlot.R | 7 R/glmmRefit.R | 8 R/glmmSeq.R | 29 R/lmmSeq.R | 9 R/maPlot.R | 2 build/vignette.rds |binary inst/doc/glmmSeq.html | 2428 +++++++++++++++++++++++++------------------------- man/glmmRefit.Rd | 2 man/glmmSeq.Rd | 6 man/lmmSeq.Rd | 6 15 files changed, 1295 insertions(+), 1267 deletions(-)
Title: Fast Partial Least Squares for High-Dimensional Data
Description: Fast implementations of partial least squares models for
high-dimensional regression and classification. The 'fastPLS' software
provides
compiled implementations of PLS-SVD, a SIMPLS-family estimator, OPLS and
kernel PLS, together
with truncated singular value decomposition backends, discriminant
classifiers, cross-validation utilities and optional 'CUDA' or Apple 'Metal'
acceleration when the required system libraries are available. Compact
latent prediction and memory-aware numerical routes support analyses with
large predictor or multivariate-response matrices.
Author: Stefano Cacciatore [aut, cre] ,
Dupe Ojo [aut] ,
Leonardo Tenori [aut] ,
Alessia Vignoli [aut]
Maintainer: Stefano Cacciatore <tkcaccia@gmail.com>
Diff between fastPLS versions 0.3 dated 2026-09-28 and 0.4 dated 2026-10-20
fastPLS-0.3/fastPLS/man/has_cuda.Rd |only fastPLS-0.3/fastPLS/man/has_metal.Rd |only fastPLS-0.4/fastPLS/DESCRIPTION | 10 fastPLS-0.4/fastPLS/INSTALL | 20 + fastPLS-0.4/fastPLS/MD5 | 58 ++-- fastPLS-0.4/fastPLS/NAMESPACE | 2 fastPLS-0.4/fastPLS/NEWS.md | 36 ++ fastPLS-0.4/fastPLS/R/backend.R | 50 +++ fastPLS-0.4/fastPLS/R/main.R | 25 + fastPLS-0.4/fastPLS/R/native_api.R | 4 fastPLS-0.4/fastPLS/README.md | 21 + fastPLS-0.4/fastPLS/cleanup | 2 fastPLS-0.4/fastPLS/inst/doc/fastPLS.R | 14 - fastPLS-0.4/fastPLS/inst/doc/fastPLS.Rmd | 34 +- fastPLS-0.4/fastPLS/inst/doc/fastPLS.html | 113 ++++++-- fastPLS-0.4/fastPLS/inst/doc/installation.R | 19 - fastPLS-0.4/fastPLS/inst/doc/installation.Rmd | 35 +- fastPLS-0.4/fastPLS/inst/doc/installation.html | 53 ++-- fastPLS-0.4/fastPLS/inst/include/fastpls/core/matrix.hpp | 14 - fastPLS-0.4/fastPLS/inst/include/fastpls/core/simpls.hpp | 4 fastPLS-0.4/fastPLS/man/cuda_info.Rd | 19 + fastPLS-0.4/fastPLS/src/core_cpu_backend.cpp | 2 fastPLS-0.4/fastPLS/src/core_metal_backend.mm |only fastPLS-0.4/fastPLS/src/r_api.cpp | 71 ++++- fastPLS-0.4/fastPLS/tests/testthat/test-cran-cuda-capability.R | 130 +++++++++- fastPLS-0.4/fastPLS/tests/testthat/test-cran-direct-lda-truncated-path.R | 4 fastPLS-0.4/fastPLS/tests/testthat/test-cran-lda-degenerate-cv.R | 5 fastPLS-0.4/fastPLS/tests/testthat/test-cran-lda-score-moments.R |only fastPLS-0.4/fastPLS/tests/testthat/test-cran-smoke.R | 30 ++ fastPLS-0.4/fastPLS/tools/cuda/strict-smoke.R | 4 fastPLS-0.4/fastPLS/vignettes/fastPLS.Rmd | 34 +- fastPLS-0.4/fastPLS/vignettes/installation.Rmd | 35 +- 32 files changed, 646 insertions(+), 202 deletions(-)
Title: Numerical Methods and Optimization in Finance
Description: Functions, examples and data from the first and
the second edition of "Numerical Methods and Optimization in
Finance" by M. Gilli, D. Maringer and E. Schumann (2019,
ISBN:978-0128150658). The package provides implementations
of optimisation heuristics (Differential Evolution, Genetic
Algorithms, Particle Swarm Optimisation, Simulated Annealing
and Threshold Accepting), and other optimisation tools, such
as grid search and greedy search. There are also functions
for the valuation of financial instruments such as bonds and
options, for portfolio selection and functions that help
with stochastic simulations.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between NMOF versions 2.11-0 dated 2025-10-20 and 2.12-0 dated 2026-10-20
DESCRIPTION | 8 +-- MD5 | 85 ++++++++++++++++++------------------ NAMESPACE | 1 NEWS | 11 ++++ R/portfolio.R | 92 ++++++++++++++++++++++++++++++++++++++- README.md | 4 - build/partial.rdb |binary build/vignette.rds |binary inst/NMOFex/README | 6 +- inst/doc/An_overview.R | 10 +--- inst/doc/An_overview.Rnw | 16 ++---- inst/doc/An_overview.pdf |binary inst/doc/DEnss.R | 2 inst/doc/DEnss.Rnw | 4 - inst/doc/DEnss.pdf |binary inst/doc/LSqueens.R | 2 inst/doc/LSqueens.pdf |binary inst/doc/LSselect.R | 2 inst/doc/LSselect.pdf |binary inst/doc/NMOF.bib | 25 +++++++--- inst/doc/PSlms.R | 2 inst/doc/PSlms.pdf |binary inst/doc/TAportfolio.R | 2 inst/doc/TAportfolio.pdf |binary inst/doc/portfolio.R | 28 +++++++---- inst/doc/portfolio.Rnw | 30 +++++++++--- inst/doc/portfolio.pdf |binary inst/doc/qTableEx.R | 2 inst/doc/qTableEx.pdf |binary inst/doc/repair.R | 2 inst/doc/repair.pdf |binary inst/doc/vectorise.R | 2 inst/doc/vectorise.pdf |binary inst/tinytest/test_bracketing.R | 4 - inst/tinytest/test_portfolio.R | 23 ++++++++- inst/tinytest/test_xwGauss.R | 2 inst/unitTests/test_results.txt | 22 ++++----- inst/unitTests/unitTestscallCF.R | 2 man/maxMinR.Rd |only man/minvar.Rd | 6 +- vignettes/An_overview.Rnw | 16 ++---- vignettes/DEnss.Rnw | 4 - vignettes/NMOF.bib | 25 +++++++--- vignettes/portfolio.Rnw | 30 +++++++++--- 44 files changed, 311 insertions(+), 159 deletions(-)
Title: Lightweight Stdio MCP Server for R
Description: Provides a lightweight Model Context Protocol (MCP) server for
exposing 'R' functions as tools over standard input and output ('stdio').
Designed for local, client-launched integrations, with protocol-aware tool
definitions and results, JSON Schema helpers, and optional interoperability
with 'ellmer'.
Author: Juha Itkonen [aut, cre, cph]
Maintainer: Juha Itkonen <juha@tosidata.com>
Diff between mcplite versions 0.1.0 dated 2026-08-03 and 0.2.0 dated 2026-10-20
DESCRIPTION | 8 MD5 | 53 - NEWS.md | 20 R/dispatch.R | 377 +++++++++-- R/mcp_server.R | 84 +- R/mcplite-package.R |only R/mcplite-results.R |only R/otel.R | 14 R/protocol.R | 87 ++ R/registry.R | 4 R/tool.R | 132 ++-- R/tool_adapter.R | 133 ++-- R/tool_execution.R | 6 R/tool_result.R | 84 +- R/transport_stdio.R | 2 R/utils.R | 15 README.md | 68 +- man/mcp_server.Rd | 91 ++ man/mcplite-results.Rd |only man/mcplite.Rd |only man/tool-types.Rd | 31 man/tool.Rd | 56 + man/tool_result.Rd | 35 - tests/testthat/helper-tools.R | 55 + tests/testthat/test-json.R |only tests/testthat/test-otel.R | 327 +++++++++ tests/testthat/test-protocol-dispatch.R | 689 +++++++++++++++++++-- tests/testthat/test-stdio.R | 266 ++++++++ tests/testthat/test-tool-results.R | 1049 +++++++++++++++++++++++++++++--- tests/testthat/test-tools.R | 335 ++++++++++ 30 files changed, 3532 insertions(+), 489 deletions(-)
Title: Tidy Access to Spanish INE Demographic Data
Description: Provides tidy, harmonized access to demographic data from the
Spanish National Statistics Institute (INE) fenomenos demograficos
domain, including population, births, and deaths, retrieved live via
the official 'ineapir' API wrapper, with optional spatial integration at
municipality and province level via 'mapSpain'. Mortality indicators
follow the Human Mortality Database Methods Protocol, including the
average age at death in infancy method of Andreev and Kingkade (2015)
<doi:10.4054/DemRes.2015.33.13>.
Author: J. R. Caro-Barrera [aut, cre, cph]
Maintainer: J. R. Caro-Barrera <jrcaro@uco.es>
Diff between inedemogR versions 0.2.0 dated 2026-10-05 and 0.2.1 dated 2026-10-20
DESCRIPTION | 6 +- MD5 | 32 +++++++------- NEWS.md | 32 ++++++++++++++ R/abridged_life_tables.R | 66 +++++++++++++++++++++++++---- R/exposure.R | 57 ++++++++++++++++++------- R/life_tables.R | 16 ++++--- README.md | 7 +-- inst/doc/inedemogR-tutorial.pdf |binary man/build_abridged_life_table.Rd | 7 ++- man/build_abridged_life_tables.Rd | 6 +- man/build_life_tables.Rd | 6 +- man/compute_exposure.Rd | 9 +++ man/validate_abridged_life_table.Rd | 13 ++++- man/validate_exposure.Rd | 7 +-- tests/testthat/test-abridged_life_tables.R | 44 +++++++++++++++++++ tests/testthat/test-corrections.R | 18 +++++++ tests/testthat/test-exposure.R | 52 ++++++++++++++++++++++ 17 files changed, 314 insertions(+), 64 deletions(-)
Title: Access to CAPES Data
Description: Provides simplified access to the data from the Catalog of Theses and Dissertations
of the Brazilian Coordination for the Improvement of Higher Education Personnel (CAPES, <https://catalogodeteses.capes.gov.br>)
for the years 1987 through 2024. The dataset includes variables such as Higher Education
Institution (institution), Area of Concentration (area), Graduate Program Name (program_name),
Type of Work (type), Language of Work (language), Author Identification (author), Abstract
(abstract), Advisor Identification (advisor), Development Region (region), State (state).
Author: Andre Leite [aut, cre] ,
Hugo Vasconcelos Medeiros [aut] ,
Dalson Figueiredo Filho [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between capesR versions 0.2.0 dated 2026-09-20 and 0.2.1 dated 2026-10-20
DESCRIPTION | 34 +++++++++------- MD5 | 21 +++++----- NEWS.md | 15 +++++++ R/capes.R | 95 ++++++++++++++++++++++++++++++++--------------- README.md | 34 ++++++++++++++-- inst/doc/capesR.Rmd | 24 +++++++++-- inst/doc/capesR.html | 34 ++++++++++++---- man/read_capes_data.Rd | 6 +- man/search_capes_text.Rd | 37 +++++++++++++----- tests |only vignettes/capesR.Rmd | 24 +++++++++-- 11 files changed, 238 insertions(+), 86 deletions(-)
Title: Truncated Exponential Family
Description: Handles truncated members from the exponential family of
probability distributions. Contains functions such as rtruncnorm() and
dtruncpois(), which are truncated versions of rnorm() and dpois() from the
stats package that also offer richer output containing, for example, the
distribution parameters. It also provides functions to retrieve the original
distribution parameters from a truncated sample by maximum-likelihood
estimation.
Author: Rene Holst [aut],
Waldir Leoncio [cre, aut]
Maintainer: Waldir Leoncio <w.l.netto@medisin.uio.no>
Diff between TruncExpFam versions 1.2.1 dated 2025-04-10 and 1.2.2 dated 2026-10-20
DESCRIPTION | 10 - MD5 | 48 ++++----- NAMESPACE | 164 +++++++++++++++++++++---------- NEWS.md | 5 R/TruncExpFam-package.R | 12 +- R/beta.R | 6 - R/binomial.R | 6 - R/chisq.R | 6 - R/contbernoulli.R | 6 - R/exponential.R | 6 - R/gamma.R | 6 - R/inverse-gamma.R | 6 - R/inverse-gaussian.R | 6 - R/log-normal.R | 6 - R/negative-binomial.R | 6 - R/normal.R | 6 - R/poisson.R | 6 - R/print.R | 7 - R/rtrunc_direct.R | 32 +++--- R/validateDomain.R | 24 ++-- R/validateSupport.R | 24 ++-- build/vignette.rds |binary inst/doc/Sampling_and_ML_estimation.html | 5 man/TruncExpFam.Rd | 1 tests/testthat/test-direct-sampling.R | 30 +++++ 25 files changed, 268 insertions(+), 166 deletions(-)
Title: Toolkit for Reduced Form and Structural Smooth Transition Vector
Autoregressive Models
Description: Penalized and non-penalized maximum likelihood estimation of smooth
transition vector autoregressive models with various types of transition weight
functions, conditional distributions, and identification methods. Constrained
estimation with various types of constraints is available. Residual based
model diagnostics, forecasting, simulations, counterfactual analysis, and
computation of impulse response functions, generalized impulse response functions,
generalized forecast error variance decompositions, as well as historical
decompositions. See
Heather Anderson, Farshid Vahid (1998) <doi:10.1016/S0304-4076(97)00076-6>,
Helmut Lütkepohl, Aleksei Netšunajev (2017) <doi:10.1016/j.jedc.2017.09.001>,
Markku Lanne, Savi Virolainen (2025) <doi:10.1016/j.jedc.2025.105162>,
Savi Virolainen (2026) <doi:10.1080/07474938.2026.2673986>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@gmail.com>
Diff between sstvars versions 1.2.5 dated 2026-08-04 and 1.2.6 dated 2026-10-20
DESCRIPTION | 6 +-- MD5 | 24 ++++++------- NEWS.md | 11 ++++++ R/LSest.R | 75 ++++++++++++++++++++++++++++++++++------- R/MAINest.R | 25 +++++++++++-- R/STVARconstruction.R | 9 +++- R/moreEst.R | 4 +- inst/doc/sstvars-vignette.Rnw | 2 - inst/doc/sstvars-vignette.pdf |binary man/estim_LS.Rd | 5 ++ man/estim_NLS.Rd | 7 +++ man/fitSTVAR.Rd | 11 ++++++ vignettes/sstvars-vignette.Rnw | 2 - 13 files changed, 144 insertions(+), 37 deletions(-)
Title: 'DuckDB' High Throughput Sequencing File Formats Reader
Extension
Description: Bundles the 'duckhts' 'DuckDB' extension for reading High Throughput
Sequencing file formats with 'DuckDB'. The 'DuckDB' C extension API
<https://duckdb.org/docs/stable/clients/c/api> and its 'htslib' dependency are
compiled from vendored sources during package installation. James K Bonfield and co-authors (2021) <doi:10.1093/gigascience/giab007>. VariantKey / RegionKey support follows Nicola Asuni (2018) <doi:10.1101/473744>.
Author: Sounkou Mahamane Toure [aut, cre],
Ryan Ward [aut] ,
Nurture Bio [cph] ,
James K Bonfield, John Marshall,Petr Danecek ,Heng Li , Valeriu Ohan,
Andrew Whitwham,Thomas Keane , Robert M Davies [ctb] ,
DuckHTS Contributors [cph] ),
RBCFTools Authors [cph [...truncated...]
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>
Diff between Rduckhts versions 1.5.2-0.1.5 dated 2026-09-16 and 2.0.0.0.1.9 dated 2026-10-20
Rduckhts-1.5.2-0.1.5/Rduckhts/R/haplotypes.R |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/duckhts_extension/duckvep |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/duckhts_extension/include/duckvep_sql.h |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_clinvar_terminal_partial.fa |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_clinvar_terminal_partial.fa.fai |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_hgvs_anchor.fa |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_hgvs_anchor.fa.fai |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_indel_translation.fa |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_indel_translation.fa.fai |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_minimal.fa |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_minimal.fa.fai |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_n_indel.fa |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_n_indel.fa.fai |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_repeat.fa |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_repeat.fa.fai |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_terminal_partial.fa |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/extdata/duckvep_terminal_partial.fa.fai |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/tinytest/test_duckvep.R |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/tinytest/test_duckvep_haplotypes.R |only Rduckhts-1.5.2-0.1.5/Rduckhts/inst/tinytest/test_duckvep_phase.R |only Rduckhts-1.5.2-0.1.5/Rduckhts/man/rduckhts_haplotypes.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/DESCRIPTION | 40 Rduckhts-2.0.0.0.1.9/Rduckhts/MD5 | 411 + Rduckhts-2.0.0.0.1.9/Rduckhts/NAMESPACE | 25 Rduckhts-2.0.0.0.1.9/Rduckhts/NEWS.md | 552 ++ Rduckhts-2.0.0.0.1.9/Rduckhts/R/ancestry.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/R/ancestry_bam.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/R/ancestry_geno.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/R/ancestry_panel.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/R/ancestry_wide.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/R/bootstrap.R | 65 Rduckhts-2.0.0.0.1.9/Rduckhts/R/connection.R | 66 Rduckhts-2.0.0.0.1.9/Rduckhts/R/count_mixture_lowpass.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/R/depth.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/R/duckhts.R | 767 ++- Rduckhts-2.0.0.0.1.9/Rduckhts/R/geno.R | 239 + Rduckhts-2.0.0.0.1.9/Rduckhts/R/insert_size.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/R/package.R | 2 Rduckhts-2.0.0.0.1.9/Rduckhts/R/roh.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/R/somalier.R | 213 Rduckhts-2.0.0.0.1.9/Rduckhts/R/somalier_find_sites.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/R/source_manifest.R | 7 Rduckhts-2.0.0.0.1.9/Rduckhts/R/sql_helpers.R | 37 Rduckhts-2.0.0.0.1.9/Rduckhts/configure | 11 Rduckhts-2.0.0.0.1.9/Rduckhts/configure.win | 2 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/COPYRIGHT | 186 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/LICENSE |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/ancestry_sql.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/bam_bed_coverage.c | 65 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/bam_insert_size_counts.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/bam_mate_overlap_counts.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/bam_mismatch_counts.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/bam_reader.c | 335 + Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/bam_site_counts.c | 41 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/bcf_reader.c | 132 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/bcf_scan.c | 111 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/bed_line.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/bgzip.c | 84 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/cgranges_api.c | 922 ---- Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/count_cells.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/count_error_model.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/count_error_sql.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/count_error_udf.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/count_mixture_model.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/count_mixture_sql.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/count_mixture_udf.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/depth_sql.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/depth_state_hmm.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/depth_state_udf.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/duckdb_capi/LICENSE |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/duckhts.c | 660 +- Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/duckhts_sources.tsv | 51 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/extension_registration.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/genbank_core.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/genbank_reader.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/geno_reader.c | 36 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/hts_meta_reader.c | 100 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/bam_site_counts.h | 29 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/bcf_scan.h | 11 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/bed_line.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/count_cells.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/count_error_model.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/count_mixture_model.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/count_sql.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/depth_state_hmm.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/duckdb_map.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/duckhts_cigar.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/duckhts_output_file.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/duckhts_public_macros.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/duckhts_registration.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/duckhts_somalier.h | 18 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/duckhts_somalier_panel_sql.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/genbank_core.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/hts_io_tuning.h | 36 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/named_attribute_columns.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/region_list.h | 36 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/regions_bind.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/roh_hmm.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/roh_sites.h |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/include/variantkey/LICENSE |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/insert_size_sql.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/interval_udf.c | 303 - Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/kmer_udf.c | 848 ++- Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/liftover_udf.c | 2 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/mosdepth_table.c | 243 - Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/named_attribute_columns.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/region_list.c | 120 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/roh_hmm.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/roh_sites.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/roh_sql.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/roh_udf.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/samtools_idxstats_table.c | 52 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/score_udf.c | 2 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/somalier.c | 41 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/somalier_bam_extract_sql.c | 291 - Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/somalier_contamination_sql.c | 3 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/somalier_find_sites_sql.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/somalier_panel_sql.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/somalier_sex_sql.c |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/somalier_sql.c | 330 + Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/somalier_vcf_extract_sql.c | 131 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/tabix_reader.c | 317 + Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/variantkey_udf.c | 10 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/duckhts_extension/wasm_http_hfile.c | 106 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bam_mismatch.bam |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bam_mismatch.bam.bai |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bam_mismatch.cram |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bam_mismatch.cram.crai |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bam_mismatch.fa |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bam_mismatch.fa.fai |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bam_mismatch.mask.bcf |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bam_mismatch.mask.bcf.csi |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bam_scan_mixed.bam.nostats.bai |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bam_scan_mixed.bam.nostats.legacy.bai |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bcf_offset.bcf |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bcf_offset.bcf.csi |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bcf_offset.vcf.gz |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bcf_offset.vcf.gz.tbi |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bcf_offset_plain.vcf |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bcf_record_ends.tsv |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/bed_error_policy.bed |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/genbank_gene_order.gb |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/genbank_phase.gb |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/geno_sites.bcf |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/geno_sites.bcf.csi |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/geno_sites.vcf |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/geno_sites.vcf.gz |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/geno_sites.vcf.gz.tbi |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/gff_named_attributes.gff3 |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/gff_named_attributes.gff3.gz |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/gff_named_attributes.gff3.gz.tbi |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/gtf_named_attributes.gtf |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/gtf_named_attributes.gtf.gz |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/gtf_named_attributes.gtf.gz.tbi |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/insert_size |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/phix174.gb |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/roh_af.tsv.gz |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/roh_empty.vcf |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/roh_fixture.vcf.gz |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/roh_gt_only.vcf |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/roh_map_chr1.txt |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/roh_map_chr2.txt |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/roh_repeated.vcf.gz |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/roh_repeated.vcf.gz.tbi |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/roh_repeated_af.tsv.gz |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/roh_repeated_af.tsv.gz.tbi |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/roh_single_site.vcf |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/somalier_population_1000g.vcf.gz |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/function_catalog/functions.md | 122 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/function_catalog/functions.tsv | 98 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/function_catalog/functions.yaml | 1193 +++-- Rduckhts-2.0.0.0.1.9/Rduckhts/inst/function_catalog/reference.md | 2250 +++++++--- Rduckhts-2.0.0.0.1.9/Rduckhts/inst/htslib_config.R.in | 2 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_ancestry.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_ancestry_contracts.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_bam_mate_overlap_counts.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_bam_mismatch_counts.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_bam_scan.R | 100 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_basic.R | 109 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_bcf_file_offset.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_cgranges_api.R | 83 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_cigar_utils.R | 295 + Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_connection.R | 19 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_count_error_fit.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_count_mixture_lowpass.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_database_lifetime.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_depth_fraction.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_depth_state_model.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_genbank.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_geno_sites.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_gxf_named_attributes.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_htslib_contract.R | 1 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_indexes_bgzip.R | 54 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_insert_size.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_intervals.R | 33 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_macro_installation.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_mosdepth.R | 5 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_munge.R | 4 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_roh.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_samtools_idxstats.R | 15 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_somalier.R | 37 Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_somalier_extraction.R | 304 + Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_somalier_find_sites.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_somalier_sex.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/tinytest/test_table_overwrite_failure.R |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_ancestry_bam.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_ancestry_geno.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_ancestry_panel.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_ancestry_proportions.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_bam_insert_size_counts.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_bam_mate_overlap_counts.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_bam_mismatch_counts.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_bcf.Rd | 24 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_bed.Rd | 7 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_connect.Rd | 4 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_count_error_fit.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_count_mixture_lowpass.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_depth_bins.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_depth_region_fraction.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_depth_sex_fraction.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_depth_state_solutions.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_genbank.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_genbank_to_fasta.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_geno.Rd | 11 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_geno_sites.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_gff.Rd | 7 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_gtf.Rd | 7 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_install_macros.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_liftover.Rd | 2 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_load.Rd | 5 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_munge.Rd | 2 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_roh.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_roh_counts.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_somalier_bam_counts.Rd | 15 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_somalier_find_sites.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_somalier_import_sites.Rd | 10 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_somalier_relatedness.Rd | 9 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_somalier_sex.Rd |only Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_somalier_sketches.Rd | 6 Rduckhts-2.0.0.0.1.9/Rduckhts/man/rduckhts_somalier_vcf_counts.Rd | 5 241 files changed, 8924 insertions(+), 4003 deletions(-)
Title: Interactive 'Shiny' Interface for 'BsplineQuantReg'
Description: A user-friendly interactive Shiny interface for the 'BsplineQuantReg' package, enabling quantile regression using B-splines with shape constraints,
based on the method described in Abbes (2025). Almost all parameters of the main function 'quantile_spline()' can be tuned. Features include interactive
knot placement, per-region constraint specification, 'CSV' data import, direct demo access, reproducible R code generation, and solver selection.
From version 0.2.2 it handles knots multiplicity, Bspline basis visualisation, mean-square regression, pp form visualisation under human readable form, in local or canonical bases,
The version 0.2.3 allows regression with spline of any degree, with constraints implemented for degrees 0 to 5.
The GUI provides two modes, basic (compatible with 'BsplineQuantReg' >= 0.2.2)
and advanced (requires 'BsplineQuantReg' >= 0.2.6 for stable multiplicity features).
This GUI is an R (improved) version of the 'Python Tk' version of 'BsplineQuantRegPy'.
Author: Alexandre Abbes [aut, cre]
Maintainer: Alexandre Abbes <alexandre.abbes@proton.me>
Diff between BsplineQuantRegGui versions 0.2.2 dated 2026-09-01 and 0.2.3 dated 2026-10-20
DESCRIPTION | 22 MD5 | 49 NAMESPACE | 5 NEWS | 21 R/import.R | 1 R/runGui.R | 9 README.md | 70 - build |only inst/doc |only inst/docker/Dockerfile | 18 inst/shiny/app1/app.R | 4 inst/shiny/app2/app.R | 1935 +++---------------------------- inst/shiny/app2/basis_derivative.R |only inst/shiny/app2/data_generate_import.R |only inst/shiny/app2/datatab.R |only inst/shiny/app2/knot_mult_const.R |only inst/shiny/app2/regions.R |only inst/shiny/app2/rsconnect |only inst/shiny/app2/runregression_export_r.R |only inst/shiny/app2/ui_basistab.R |only inst/shiny/app2/ui_demotab.R |only inst/shiny/app2/ui_sidetab.R |only inst/shiny/app2/ui_visualisation1.R |only inst/shiny/app2/ui_visualisation2.R |only tests/testthat.R | 13 vignettes |only 26 files changed, 352 insertions(+), 1795 deletions(-)
More information about BsplineQuantRegGui at CRAN
Permanent link
Title: NFL Logo Plots in 'ggplot2' and 'gt'
Description: A set of functions to visualize National Football League
analysis in 'ggplot2' plots and 'gt' tables.
Author: Sebastian Carl [aut, cre]
Maintainer: Sebastian Carl <mrcaseb@gmail.com>
Diff between nflplotR versions 1.7.0 dated 2026-09-18 and 1.7.1 dated 2026-10-20
DESCRIPTION | 11 ++++++----- MD5 | 22 +++++++++++----------- NEWS.md | 6 ++++++ R/build_grobs.R | 4 +++- R/ggpreview.R | 4 +++- R/gt_nfl.R | 12 +++++++++--- R/nfl_team_tiers.R | 6 ++++-- R/scale_nfl.R | 8 ++++++-- R/utils.R | 21 +++++++++++++++------ R/zzz.R | 29 ++++++++++++++++++++++++----- man/element.Rd | 4 +++- man/geom_from_path.Rd | 2 +- 12 files changed, 91 insertions(+), 38 deletions(-)
Title: Microbial Community Ecology Data Analysis
Description: A series of data analysis approaches for microbiome data based on the R6 class. The classes are designed for data preprocessing, niche analysis, taxonomic abundance plot, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis, functional redundancy analysis, metabolites analysis, etc.
Author: Chi Liu [aut, cre],
Felipe R. P. Mansoldo [ctb],
Minjie Yao [ctb],
Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between microeco versions 2.4.0 dated 2026-09-24 and 2.4.1 dated 2026-10-20
DESCRIPTION | 6 - MD5 | 16 +-- R/trans_beta.R | 236 ++++++++++++++++++++++++++++++++++++++++++---------- R/trans_diff.R | 9 + R/trans_norm.R | 13 ++ R/trans_nullmodel.R | 2 man/trans_beta.Rd | 34 +++++-- man/trans_diff.Rd | 3 man/trans_norm.Rd | 5 - 9 files changed, 254 insertions(+), 70 deletions(-)
Title: Diagnostics for OMOP Common Data Model Drug Records
Description: Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Ger Inberg [aut, cre] ,
Edward Burn [aut] ,
Theresa Burkard [aut] ,
Yuchen Guo [ctb] ,
Marti Catala [ctb] ,
Mike Du [ctb] ,
Xintong Li [ctb] ,
Ross Williams [ctb] ,
Erasmus MC [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between DrugExposureDiagnostics versions 1.2.0 dated 2026-09-28 and 1.2.1 dated 2026-10-20
DESCRIPTION | 6 +- MD5 | 10 ++-- NEWS.md | 3 + README.md | 44 ++++++++++---------- inst/doc/IntroductionToDrugExposureDiagnostics.html | 6 +- tests/testthat/test-checkDrugRoutes.R | 3 - 6 files changed, 40 insertions(+), 32 deletions(-)
More information about DrugExposureDiagnostics at CRAN
Permanent link
Title: Some Utilities for Developing Data Science Software
Description: A collection of general-purpose helper functions that I (and maybe
others) find useful when developing data science software. Includes tools
for simulation, data transformation, input validation, and more.
Author: Lennart Oelschlaeger [aut, cre]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between oeli versions 0.7.8 dated 2026-09-14 and 0.7.9 dated 2026-10-20
DESCRIPTION | 15 +-- MD5 | 14 +- NAMESPACE | 173 ++++++++++++++++++++----------------- NEWS.md | 4 R/oeli-package.R | 3 R/package_logo.R | 18 +++ man/package_logo.Rd | 5 - tests/testthat/test-package_logo.R | 4 8 files changed, 138 insertions(+), 98 deletions(-)
Title: Tailored Knowledge Catalog
Description: Facilitate the management of data from knowledge
resources that are frequently used alone or together
in research environments.
In 'TKCat', knowledge resources are manipulated as modeled database (MDB)
objects. These objects provide access to the data tables along with a general
description of the resource and a detailed data model documenting the
tables, their fields and their relationships.
These MDBs are then gathered in catalogs that can be easily
explored and shared.
Finally, 'TKCat' provides tools to easily subset, filter and combine MDBs and
create new catalogs suited for specific needs.
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between TKCat versions 1.2.3 dated 2026-08-20 and 1.3.0 dated 2026-10-20
DESCRIPTION | 14 MD5 | 44 NAMESPACE | 2 R/chTKCat.R | 4 R/mcp.R |only build/vignette.rds |binary inst/doc/TKCat-EndToEnd.R |only inst/doc/TKCat-EndToEnd.Rmd |only inst/doc/TKCat-EndToEnd.html |only inst/doc/TKCat-KMR-POK.Rmd | 7 inst/doc/TKCat-KMR-POK.html | 1106 +++++++++++------------ inst/doc/TKCat-MCP.R |only inst/doc/TKCat-MCP.Rmd |only inst/doc/TKCat-MCP.html |only inst/doc/TKCat.R | 2 inst/doc/TKCat.Rmd | 7 inst/doc/TKCat.html | 1798 ++++++++++++++++++--------------------- inst/examples/fileMDB-examples.R | 61 - inst/examples/memoMDB-examples.R | 49 - inst/pkgdown.yml | 4 man/chTKCat_mcp_http_server.Rd |only man/chTKCat_mcp_server.Rd |only man/fileMDB.Rd | 61 - man/memoMDB.Rd | 49 - vignettes/TKCat-EndToEnd.Rmd |only vignettes/TKCat-KMR-POK.Rmd | 7 vignettes/TKCat-MCP.Rmd |only vignettes/TKCat.Rmd | 7 vignettes/mcp-architecture.svg |only 29 files changed, 1568 insertions(+), 1654 deletions(-)
Title: Modern Intraclass Correlation Coefficients
Description: Estimates interrater-reliability intraclass correlation
coefficients (ICCs) within the generalizability-theory framework using
modern variance-component estimation (linear mixed models) rather than
the classical analysis-of-variance mean-squares approach. Provides the
full ICC family (absolute agreement versus consistency, single versus
average, fixed versus random raters, one-way versus two-way) with
boundary-aware Monte-Carlo confidence intervals, support for imbalanced,
incomplete, and multilevel (nested) designs, decision-study projection to
other numbers of raters, and an interactive helper for choosing the
correct coefficient. Multilevel methods follow ten Hove, Jorgensen and
van der Ark (2022) <doi:10.1037/met0000391>.
Author: Jeffrey Girard [aut, cre]
Maintainer: Jeffrey Girard <me@jmgirard.com>
Diff between intraclass versions 0.1.0 dated 2026-09-10 and 0.2.0 dated 2026-10-20
DESCRIPTION | 17 MD5 | 196 - NAMESPACE | 26 NEWS.md | 190 + R/abort.R | 88 R/autoplot-theme.R | 13 R/autoplot.R | 36 R/boundary-hint.R | 73 R/choose-icc.R | 108 R/ci-bootstrap.R | 8 R/ci-montecarlo.R | 242 + R/ci-mpl.R | 18 R/ci-npbootstrap.R | 6 R/d-study.R | 357 +- R/data.R | 123 R/design.R | 21 R/engine-brms.R | 4 R/engine-glmmtmb.R | 257 + R/engine-lme4.R | 44 R/estimand.R | 20 R/icc-methods.R | 37 R/icc.R | 1260 +++++---- R/model-parameters.R |only R/zzz.R | 22 README.md | 158 - data/ratings_replicates.rda |only data/ratings_twoway.rda |only data/school.rda |only data/school_incomplete.rda |only inst/CITATION |only inst/WORDLIST | 1 inst/doc/choosing-an-icc.R | 17 inst/doc/choosing-an-icc.Rmd | 245 + inst/doc/choosing-an-icc.html | 683 ++++- inst/doc/comparison-with-other-packages.R | 66 inst/doc/comparison-with-other-packages.Rmd | 210 + inst/doc/comparison-with-other-packages.html | 2444 +++++++++++++++++-- inst/doc/d-studies-and-replicates.R | 18 inst/doc/d-studies-and-replicates.Rmd | 267 +- inst/doc/d-studies-and-replicates.html | 224 - inst/doc/engines.R | 26 inst/doc/engines.Rmd | 271 +- inst/doc/engines.html | 1091 +++++++- inst/doc/getting-started.Rmd | 139 - inst/doc/getting-started.html | 133 - inst/doc/glossary.Rmd | 418 +-- inst/doc/glossary.html | 392 +-- inst/doc/interval-methods.R | 93 inst/doc/interval-methods.Rmd | 591 ++-- inst/doc/interval-methods.html | 1652 +++++++++++- inst/doc/multilevel-designs.R | 30 inst/doc/multilevel-designs.Rmd | 423 +-- inst/doc/multilevel-designs.html | 330 +- man/choose_icc.Rd | 60 man/d_study.Rd | 277 +- man/figures/README-plot-coefficients-1.png |binary man/figures/README-plot-dstudy-1.png |binary man/icc.Rd | 835 +++--- man/intraclass-package.Rd | 1 man/ratings.Rd | 12 man/ratings_incomplete.Rd | 11 man/ratings_replicates.Rd |only man/ratings_twoway.Rd |only man/school.Rd |only man/school_incomplete.Rd |only tests/testthat/_snaps/choose-icc.md | 20 tests/testthat/_snaps/icc-methods.md | 2 tests/testthat/fixtures/bayesian-vignette-oracle.rds |binary tests/testthat/helper-glmmtmb-frames.R |only tests/testthat/helper-near-one-frames.R |only tests/testthat/test-abort-remedy-truthfulness.R | 3 tests/testthat/test-autoplot.R | 34 tests/testthat/test-boundary-abort-hint.R | 268 +- tests/testthat/test-boundary-policy.R | 8 tests/testthat/test-choose-icc.R | 6 tests/testthat/test-ci-npbootstrap-unbalanced.R | 9 tests/testthat/test-class-names.R |only tests/testthat/test-d-study.R | 4 tests/testthat/test-dstudy-band-checks.R |only tests/testthat/test-exported-contract.R | 30 tests/testthat/test-flat-scores.R |only tests/testthat/test-glmmtmb-false-zero.R |only tests/testthat/test-glmmtmb-fit-conditions.R |only tests/testthat/test-glmmtmb-start-scale.R |only tests/testthat/test-icc-brms.R | 62 tests/testthat/test-icc-fixed-multilevel.R | 12 tests/testthat/test-icc-incomplete-multilevel.R | 6 tests/testthat/test-icc-lavaan-multilevel.R | 14 tests/testthat/test-icc-lavaan.R | 13 tests/testthat/test-icc-lme4-engine.R | 4 tests/testthat/test-icc-type-vector.R | 3 tests/testthat/test-model-parameters.R |only tests/testthat/test-n-o-disposition-grid.R | 21 tests/testthat/test-occasions-vocabulary.R | 14 tests/testthat/test-reducer-abort-hint.R | 87 tests/testthat/test-replicates.R | 5 tests/testthat/test-review-fixes.R | 14 tests/testthat/test-unresolved-interval.R |only tests/testthat/test-vignette-claims.R | 167 - tests/testthat/test-vignette-data-regen.R |only tests/testthat/test-vignette-transcripts.R | 12 tests/testthat/test-zero-residual.R |only vignettes/choosing-an-icc.Rmd | 245 + vignettes/comparison-with-other-packages.Rmd | 210 + vignettes/d-studies-and-replicates.Rmd | 267 +- vignettes/engines.Rmd | 271 +- vignettes/getting-started.Rmd | 139 - vignettes/glossary.Rmd | 418 +-- vignettes/interval-methods.Rmd | 591 ++-- vignettes/multilevel-designs.Rmd | 423 +-- 110 files changed, 12082 insertions(+), 5584 deletions(-)
Title: Fast and Robust Multi-Scale Graph Clustering
Description: A graph community detection algorithm that aims to be performant
on large graphs and robust, returning consistent results across runs.
SpeakEasy 2 (SE2), the underlying algorithm, is described in Chris Gaiteri,
David R. Connell & Faraz A. Sultan et al. (2023)
<doi:10.1186/s13059-023-03062-0>. The core algorithm is written in 'C',
providing speed and keeping the memory requirements low. This implementation
can take advantage of multiple computing cores without increasing memory
usage. SE2 can detect community structure across scales, making it a good
choice for biological data, which often has hierarchical structure. Graphs
can be passed to the algorithm as adjacency matrices using base 'R'
matrices, the 'Matrix' library, 'igraph' graphs, or any data that can be
coerced into a matrix.
Author: David Connell [aut, cre, cph] ,
Chris Gaiteri [cph] ,
Gabor Csardi [cph, ctb] ,
Tamas Nepusz [cph, ctb] ,
Szabolcs Horvat [cph, ctb] ,
Vincent Traag [cph, ctb] ,
Fabio Zanini [cph, ctb] ,
Daniel Noom [cph, ctb] ,
The igraph development team [cph] ,
F [...truncated...]
Maintainer: David Connell <david32@dcon.addy.io>
Diff between speakeasyR versions 0.1.8 dated 2025-09-30 and 0.1.9 dated 2026-10-19
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ README.md | 2 +- build/vignette.rds |binary configure | 18 +++++++++--------- configure.ac | 2 +- configure.win | 2 +- inst/doc/speakeasyR.html | 12 +++--------- 9 files changed, 32 insertions(+), 32 deletions(-)
Title: Interface for Large Language Model APIs in R
Description: One interface to many large language model providers: a single
configuration object and a single calling function serve chat and embedding
models alike, so research code does not change when the provider does. The
same calls scale to multi-model and multi-condition studies. Small open
models can also run on the user's computer through 'llama.cpp', downloaded
only on request, with access to next-token probabilities.
Author: Ali Sanaei [aut, cre]
Maintainer: Ali Sanaei <sanaei@uchicago.edu>
Diff between LLMR versions 0.8.11 dated 2026-07-24 and 0.9.0 dated 2026-10-19
LLMR-0.8.11/LLMR/man/llm_methods_text.Rd |only LLMR-0.9.0/LLMR/DESCRIPTION | 19 LLMR-0.9.0/LLMR/MD5 | 149 ++++-- LLMR-0.9.0/LLMR/NAMESPACE | 21 LLMR-0.9.0/LLMR/NEWS.md | 208 ++++++++ LLMR-0.9.0/LLMR/R/LLMR.R | 233 +++++++--- LLMR-0.9.0/LLMR/R/LLMR_response.R | 18 LLMR-0.9.0/LLMR/R/LLM_chat_session.R | 43 + LLMR-0.9.0/LLMR/R/LLM_parallel_utils.R | 147 ++++-- LLMR-0.9.0/LLMR/R/LLM_robust_utils.R | 31 + LLMR-0.9.0/LLMR/R/audit_log.R | 86 ++- LLMR-0.9.0/LLMR/R/batch_api.R | 140 ++++-- LLMR-0.9.0/LLMR/R/errors_catalog.R |only LLMR-0.9.0/LLMR/R/generics.R | 8 LLMR-0.9.0/LLMR/R/generics_reset.R | 9 LLMR-0.9.0/LLMR/R/hash.R | 8 LLMR-0.9.0/LLMR/R/json_mode.R | 37 - LLMR-0.9.0/LLMR/R/local_install.R |only LLMR-0.9.0/LLMR/R/local_provider.R |only LLMR-0.9.0/LLMR/R/local_registry.R |only LLMR-0.9.0/LLMR/R/local_research.R |only LLMR-0.9.0/LLMR/R/local_server.R |only LLMR-0.9.0/LLMR/R/log_messages.R | 11 LLMR-0.9.0/LLMR/R/log_read.R | 135 ++++- LLMR-0.9.0/LLMR/R/render_messages.R | 78 +++ LLMR-0.9.0/LLMR/R/secrets.R | 5 LLMR-0.9.0/LLMR/R/stream.R | 200 ++++++-- LLMR-0.9.0/LLMR/R/tags_mode.R | 29 - LLMR-0.9.0/LLMR/R/tools.R | 141 ++++-- LLMR-0.9.0/LLMR/R/usage.R | 140 ++++-- LLMR-0.9.0/LLMR/README.md | 44 + LLMR-0.9.0/LLMR/build/vignette.rds |binary LLMR-0.9.0/LLMR/inst/ai/LLMR.md | 37 + LLMR-0.9.0/LLMR/inst/doc/local-models.R |only LLMR-0.9.0/LLMR/inst/doc/local-models.Rmd |only LLMR-0.9.0/LLMR/inst/doc/local-models.html |only LLMR-0.9.0/LLMR/man/call_llm.Rd | 41 + LLMR-0.9.0/LLMR/man/call_llm_par_structured.Rd | 10 LLMR-0.9.0/LLMR/man/call_llm_par_tags.Rd | 10 LLMR-0.9.0/LLMR/man/call_llm_stream.Rd | 25 - LLMR-0.9.0/LLMR/man/call_llm_tools.Rd | 12 LLMR-0.9.0/LLMR/man/diagnostics.Rd | 8 LLMR-0.9.0/LLMR/man/enable_structured_output.Rd | 4 LLMR-0.9.0/LLMR/man/figures |only LLMR-0.9.0/LLMR/man/llm_batch_fetch.Rd | 12 LLMR-0.9.0/LLMR/man/llm_batch_submit.Rd | 7 LLMR-0.9.0/LLMR/man/llm_chat_session.Rd | 5 LLMR-0.9.0/LLMR/man/llm_choice_probs.Rd |only LLMR-0.9.0/LLMR/man/llm_config.Rd | 12 LLMR-0.9.0/LLMR/man/llm_continue.Rd |only LLMR-0.9.0/LLMR/man/llm_failures.Rd | 16 LLMR-0.9.0/LLMR/man/llm_hash.Rd | 4 LLMR-0.9.0/LLMR/man/llm_judge.Rd | 4 LLMR-0.9.0/LLMR/man/llm_local_dir.Rd |only LLMR-0.9.0/LLMR/man/llm_local_install.Rd |only LLMR-0.9.0/LLMR/man/llm_local_model.Rd |only LLMR-0.9.0/LLMR/man/llm_local_models.Rd |only LLMR-0.9.0/LLMR/man/llm_local_ready.Rd |only LLMR-0.9.0/LLMR/man/llm_local_start.Rd |only LLMR-0.9.0/LLMR/man/llm_local_uninstall.Rd |only LLMR-0.9.0/LLMR/man/llm_log_enable.Rd | 21 LLMR-0.9.0/LLMR/man/llm_log_read.Rd | 15 LLMR-0.9.0/LLMR/man/llm_next_token.Rd |only LLMR-0.9.0/LLMR/man/llm_par_resume.Rd | 53 +- LLMR-0.9.0/LLMR/man/llm_render_template.Rd |only LLMR-0.9.0/LLMR/man/llm_request_from_log.Rd | 26 - LLMR-0.9.0/LLMR/man/llm_score.Rd |only LLMR-0.9.0/LLMR/man/llm_tokenize.Rd |only LLMR-0.9.0/LLMR/man/llm_usage.Rd | 23 LLMR-0.9.0/LLMR/man/llmr_response.Rd | 18 LLMR-0.9.0/LLMR/man/reset.Rd | 9 LLMR-0.9.0/LLMR/man/reset_llm_parallel.Rd | 17 LLMR-0.9.0/LLMR/man/setup_llm_parallel.Rd | 18 LLMR-0.9.0/LLMR/man/tool_calls.Rd | 8 LLMR-0.9.0/LLMR/tests/testthat/test-000-experiment-reporting.R | 11 LLMR-0.9.0/LLMR/tests/testthat/test-083-core.R | 15 LLMR-0.9.0/LLMR/tests/testthat/test-083-features.R | 7 LLMR-0.9.0/LLMR/tests/testthat/test-batch-ingestion.R |only LLMR-0.9.0/LLMR/tests/testthat/test-bugfixes.R | 77 +++ LLMR-0.9.0/LLMR/tests/testthat/test-error-catalog.R |only LLMR-0.9.0/LLMR/tests/testthat/test-experiment-templating.R |only LLMR-0.9.0/LLMR/tests/testthat/test-gemini-thinking-usage.R |only LLMR-0.9.0/LLMR/tests/testthat/test-judge-target.R |only LLMR-0.9.0/LLMR/tests/testthat/test-live-cheap.R | 23 LLMR-0.9.0/LLMR/tests/testthat/test-local-live.R |only LLMR-0.9.0/LLMR/tests/testthat/test-local.R |only LLMR-0.9.0/LLMR/tests/testthat/test-log-read-lines.R |only LLMR-0.9.0/LLMR/tests/testthat/test-meta.R |only LLMR-0.9.0/LLMR/tests/testthat/test-par-resume.R |only LLMR-0.9.0/LLMR/tests/testthat/test-price-table.R |only LLMR-0.9.0/LLMR/tests/testthat/test-replay-reissuable.R |only LLMR-0.9.0/LLMR/tests/testthat/test-stream-failures.R |only LLMR-0.9.0/LLMR/tests/testthat/test-timeout-and-hash.R |only LLMR-0.9.0/LLMR/tests/testthat/test-tool-arguments.R |only LLMR-0.9.0/LLMR/tests/testthat/test-usage-unknown.R |only LLMR-0.9.0/LLMR/vignettes/local-models.Rmd |only 96 files changed, 1904 insertions(+), 584 deletions(-)
Title: Distributed Online Goodness-of-Fit Tests for Distributed
Datasets
Description: Distributed Online Goodness-of-Fit Test can process the distributed datasets. The philosophy of the package is described in Guo G.(2024) <doi:10.1016/j.apm.2024.115709>.
Author: Guangbao Guo [aut, cre] ,
Di Chang [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between Dogoftest versions 0.4.2 dated 2026-10-12 and 0.4.3 dated 2026-10-19
DESCRIPTION | 6 +++--- MD5 | 13 +++++++++---- NAMESPACE | 3 +++ R/PECVM.R | 47 +++++++++++++++++++++++------------------------ R/data1.R |only R/simulate_power.R |only data/air_quality.rda |only man/PECVM.Rd | 7 +++++-- man/air_quality.Rd |only man/simulate_power.Rd |only 10 files changed, 43 insertions(+), 33 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau
APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's
geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping
and spatial analysis.
Author: Kyle Walker [aut, cre],
Matt Herman [aut],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tidycensus versions 1.8.1 dated 2026-05-25 and 2.0.0 dated 2026-10-19
DESCRIPTION | 19 MD5 | 62 - NAMESPACE | 59 - NEWS.md | 14 R/acs.R | 234 ++++- R/census.R | 152 ++- R/estimates.R | 1220 ++++++++++++++++++++--------- R/fips_codes.R | 4 R/flows.R | 38 R/helpers.R | 83 + R/labels.R |only R/load_data.R | 292 ++---- R/popgroups.R | 14 R/pums.R | 8 R/request.R |only R/search_variables.R | 88 +- R/tidycensus-package.R | 1 R/utils.R | 161 +++ R/zzz.r | 5 man/get_acs.Rd | 42 man/get_decennial.Rd | 30 man/get_estimates.Rd | 33 man/get_flows.Rd | 28 man/get_pums.Rd | 6 man/load_variables.Rd | 35 man/pums_variables.Rd | 4 man/tidycensus-package.Rd | 1 tests/testthat/test-api-key.R | 81 + tests/testthat/test-estimates.R | 393 +++++++++ tests/testthat/test-helpers.R | 309 +++++++ tests/testthat/test-labels.R |only tests/testthat/test-national-geographies.R |only tests/testthat/test-postprocess.R |only tests/testthat/test-request.R |only tests/testthat/test-spatial-bind.R |only tests/testthat/test-utils.R |only 36 files changed, 2602 insertions(+), 814 deletions(-)
Title: Schema-Driven Machine Learning and Visualization
Description: Machine learning and visualization package with an 'S7' backend featuring
comprehensive type checking and validation, observable runs, and auditable outputs.
The functional API provides one-call access to supervised and unsupervised learning
through train(), cluster(), and decomp(). All configuration steps are performed using
setup functions and validated. A single call to train() can handle preprocessing,
decomposition, hyperparameter tuning, model stacking, and testing with nested resampling.
Supports 'data.frame', 'data.table', and 'tibble' inputs and parallel execution. Plot
methods for trained and resampled supervised models draw interactive figures through
'rtemis.draw'. Includes native implementations of SuperLearner, RuleFit, and Linear
Additive Trees, and supports conformal prediction. The package first appeared in
E.D. Gennatas (2017)
<https://repository.upenn.edu/entities/publication/d81892ea-3087-4b71-a6f5-739c58626d64>.
Author: E.D. Gennatas [aut, cre, cph]
Maintainer: E.D. Gennatas <gennatas@gmail.com>
Diff between rtemis versions 1.2.7 dated 2026-07-01 and 1.4.2 dated 2026-10-19
rtemis-1.2.7/rtemis/R/00_init.R |only rtemis-1.2.7/rtemis/R/01_ExecutionConfig.R |only rtemis-1.2.7/rtemis/R/02_Hyperparameters.R |only rtemis-1.2.7/rtemis/R/03_Metrics.R |only rtemis-1.2.7/rtemis/R/04_Preprocessor.R |only rtemis-1.2.7/rtemis/R/05_Resampler.R |only rtemis-1.2.7/rtemis/R/06_Tuner.R |only rtemis-1.2.7/rtemis/R/07_ClusteringConfig.R |only rtemis-1.2.7/rtemis/R/08_Clustering.R |only rtemis-1.2.7/rtemis/R/09_DecompositionConfig.R |only rtemis-1.2.7/rtemis/R/10_Decomposition.R |only rtemis-1.2.7/rtemis/R/11_Session.R |only rtemis-1.2.7/rtemis/R/12_Supervised.R |only rtemis-1.2.7/rtemis/R/13_MassUni.R |only rtemis-1.2.7/rtemis/R/14_Themes.R |only rtemis-1.2.7/rtemis/R/15_SuperConfig.R |only rtemis-1.2.7/rtemis/R/16_DecomposeConfig.R |only rtemis-1.2.7/rtemis/R/17_ClusterConfig.R |only rtemis-1.2.7/rtemis/R/18_CheckData.R |only rtemis-1.2.7/rtemis/R/19_S7utils.R |only rtemis-1.2.7/rtemis/R/data_xt_example.R |only rtemis-1.2.7/rtemis/R/draw_3Dscatter.R |only rtemis-1.2.7/rtemis/R/draw_bar.R |only rtemis-1.2.7/rtemis/R/draw_box.R |only rtemis-1.2.7/rtemis/R/draw_calibration.R |only rtemis-1.2.7/rtemis/R/draw_confusion.R |only rtemis-1.2.7/rtemis/R/draw_dist.R |only rtemis-1.2.7/rtemis/R/draw_graphd3.R |only rtemis-1.2.7/rtemis/R/draw_graphjs.R |only rtemis-1.2.7/rtemis/R/draw_heatmap.R |only rtemis-1.2.7/rtemis/R/draw_leaflet.R |only rtemis-1.2.7/rtemis/R/draw_pie.R |only rtemis-1.2.7/rtemis/R/draw_protein.R |only rtemis-1.2.7/rtemis/R/draw_pvals.R |only rtemis-1.2.7/rtemis/R/draw_roc.R |only rtemis-1.2.7/rtemis/R/draw_scatter.R |only rtemis-1.2.7/rtemis/R/draw_spectrogram.R |only rtemis-1.2.7/rtemis/R/draw_survfit.R |only rtemis-1.2.7/rtemis/R/draw_table.R |only rtemis-1.2.7/rtemis/R/draw_ts.R |only rtemis-1.2.7/rtemis/R/draw_varimp.R |only rtemis-1.2.7/rtemis/R/draw_volcano.R |only rtemis-1.2.7/rtemis/R/draw_xt.R |only rtemis-1.2.7/rtemis/R/theme.R |only rtemis-1.2.7/rtemis/R/utils_palettes.R |only rtemis-1.2.7/rtemis/R/utils_plot.R |only rtemis-1.2.7/rtemis/R/utils_plotly.R |only rtemis-1.2.7/rtemis/R/utils_uniprot.R |only rtemis-1.2.7/rtemis/R/utils_xt.R |only rtemis-1.2.7/rtemis/data |only rtemis-1.2.7/rtemis/inst/WORDLIST |only rtemis-1.2.7/rtemis/man/available_draw.Rd |only rtemis-1.2.7/rtemis/man/available_themes.Rd |only rtemis-1.2.7/rtemis/man/choose_theme.Rd |only rtemis-1.2.7/rtemis/man/col2grayscale.Rd |only rtemis-1.2.7/rtemis/man/color_adjust.Rd |only rtemis-1.2.7/rtemis/man/draw_3Dscatter.Rd |only rtemis-1.2.7/rtemis/man/draw_bar.Rd |only rtemis-1.2.7/rtemis/man/draw_box.Rd |only rtemis-1.2.7/rtemis/man/draw_calibration.Rd |only rtemis-1.2.7/rtemis/man/draw_confusion.Rd |only rtemis-1.2.7/rtemis/man/draw_dist.Rd |only rtemis-1.2.7/rtemis/man/draw_fit.Rd |only rtemis-1.2.7/rtemis/man/draw_graphD3.Rd |only rtemis-1.2.7/rtemis/man/draw_graphjs.Rd |only rtemis-1.2.7/rtemis/man/draw_heatmap.Rd |only rtemis-1.2.7/rtemis/man/draw_leaflet.Rd |only rtemis-1.2.7/rtemis/man/draw_pie.Rd |only rtemis-1.2.7/rtemis/man/draw_protein.Rd |only rtemis-1.2.7/rtemis/man/draw_pvals.Rd |only rtemis-1.2.7/rtemis/man/draw_roc.Rd |only rtemis-1.2.7/rtemis/man/draw_scatter.Rd |only rtemis-1.2.7/rtemis/man/draw_spectrogram.Rd |only rtemis-1.2.7/rtemis/man/draw_survfit.Rd |only rtemis-1.2.7/rtemis/man/draw_table.Rd |only rtemis-1.2.7/rtemis/man/draw_ts.Rd |only rtemis-1.2.7/rtemis/man/draw_varimp.Rd |only rtemis-1.2.7/rtemis/man/draw_volcano.Rd |only rtemis-1.2.7/rtemis/man/draw_xt.Rd |only rtemis-1.2.7/rtemis/man/get_palette.Rd |only rtemis-1.2.7/rtemis/man/plot.MassGLM.Rd |only rtemis-1.2.7/rtemis/man/previewcolor.Rd |only rtemis-1.2.7/rtemis/man/setup_ExecutionConfig.Rd |only rtemis-1.2.7/rtemis/man/theme.Rd |only rtemis-1.2.7/rtemis/man/uniprot_get.Rd |only rtemis-1.2.7/rtemis/man/xt_example.Rd |only rtemis-1.2.7/rtemis/man/xtdescribe.Rd |only rtemis-1.2.7/rtemis/tests/testthat.R |only rtemis-1.2.7/rtemis/tests/testthat/test_Theme.R |only rtemis-1.4.2/rtemis/.aspell |only rtemis-1.4.2/rtemis/DESCRIPTION | 60 rtemis-1.4.2/rtemis/LICENSE |only rtemis-1.4.2/rtemis/MD5 | 722 + rtemis-1.4.2/rtemis/NAMESPACE | 172 rtemis-1.4.2/rtemis/NEWS.md |only rtemis-1.4.2/rtemis/R/005_HyperparameterCandidates.R |only rtemis-1.4.2/rtemis/R/009_DefaultPolicy.R |only rtemis-1.4.2/rtemis/R/010_Props.R |only rtemis-1.4.2/rtemis/R/015_ReferenceProps.R |only rtemis-1.4.2/rtemis/R/020_Props_read.R |only rtemis-1.4.2/rtemis/R/024_SchemaRules.R |only rtemis-1.4.2/rtemis/R/024_SchemaRules_result.R |only rtemis-1.4.2/rtemis/R/024_SemanticRules.R |only rtemis-1.4.2/rtemis/R/025_SchemaCatalog.R |only rtemis-1.4.2/rtemis/R/026_Defaults.R |only rtemis-1.4.2/rtemis/R/027_DefaultArtifact.R |only rtemis-1.4.2/rtemis/R/030_init.R |only rtemis-1.4.2/rtemis/R/040_DataFingerprint.R |only rtemis-1.4.2/rtemis/R/045_DataProfile.R |only rtemis-1.4.2/rtemis/R/047_IngestConfig.R |only rtemis-1.4.2/rtemis/R/048_PartitionConfig.R |only rtemis-1.4.2/rtemis/R/049_DeviceConfig.R |only rtemis-1.4.2/rtemis/R/050_ExecutionConfig.R |only rtemis-1.4.2/rtemis/R/060_Provenance.R |only rtemis-1.4.2/rtemis/R/061_DataRef.R |only rtemis-1.4.2/rtemis/R/065_Torch.R |only rtemis-1.4.2/rtemis/R/070_Hyperparameters.R |only rtemis-1.4.2/rtemis/R/075_HyperparametersSet.R |only rtemis-1.4.2/rtemis/R/080_Metrics.R |only rtemis-1.4.2/rtemis/R/090_Preprocessor.R |only rtemis-1.4.2/rtemis/R/100_Resampler.R |only rtemis-1.4.2/rtemis/R/110_Tuner.R |only rtemis-1.4.2/rtemis/R/115_MetaLearners.R |only rtemis-1.4.2/rtemis/R/120_ClusteringConfig.R |only rtemis-1.4.2/rtemis/R/130_ClusterConfig.R |only rtemis-1.4.2/rtemis/R/135_ClusteringMetrics.R |only rtemis-1.4.2/rtemis/R/140_Clustering.R |only rtemis-1.4.2/rtemis/R/150_DecompositionConfig.R |only rtemis-1.4.2/rtemis/R/160_DecomposeConfig.R |only rtemis-1.4.2/rtemis/R/165_DecompositionMetrics.R |only rtemis-1.4.2/rtemis/R/170_Decomposition.R |only rtemis-1.4.2/rtemis/R/180_Session.R |only rtemis-1.4.2/rtemis/R/190_SuperConfig.R |only rtemis-1.4.2/rtemis/R/200_Supervised.R |only rtemis-1.4.2/rtemis/R/210_MassUni.R |only rtemis-1.4.2/rtemis/R/230_CheckData.R |only rtemis-1.4.2/rtemis/R/240_S7utils.R |only rtemis-1.4.2/rtemis/R/250_Explanation.R |only rtemis-1.4.2/rtemis/R/260_PredictionRegion.R |only rtemis-1.4.2/rtemis/R/270_Diagnostics.R |only rtemis-1.4.2/rtemis/R/280_SupervisedReview.R |only rtemis-1.4.2/rtemis/R/285_AISupervisedReview.R |only rtemis-1.4.2/rtemis/R/290_SupervisedWriteup.R |only rtemis-1.4.2/rtemis/R/ai_review.R |only rtemis-1.4.2/rtemis/R/algorithmDB.R | 1020 +- rtemis-1.4.2/rtemis/R/bias_variance.R |only rtemis-1.4.2/rtemis/R/calibrate.R | 93 rtemis-1.4.2/rtemis/R/check_data.R | 145 rtemis-1.4.2/rtemis/R/check_input_data.R | 78 rtemis-1.4.2/rtemis/R/cluster.R | 173 rtemis-1.4.2/rtemis/R/cluster_CMeans.R | 20 rtemis-1.4.2/rtemis/R/cluster_DBSCAN.R | 21 rtemis-1.4.2/rtemis/R/cluster_GMM.R |only rtemis-1.4.2/rtemis/R/cluster_HOPACH.R |only rtemis-1.4.2/rtemis/R/cluster_PAM.R |only rtemis-1.4.2/rtemis/R/cluster_Spectral.R |only rtemis-1.4.2/rtemis/R/cluster_flexclust.R | 21 rtemis-1.4.2/rtemis/R/conditions.R | 3 rtemis-1.4.2/rtemis/R/conformal.R |only rtemis-1.4.2/rtemis/R/ddb.R | 18 rtemis-1.4.2/rtemis/R/decomp.R | 175 rtemis-1.4.2/rtemis/R/decomp_Autoencoder.R |only rtemis-1.4.2/rtemis/R/decomp_ICA.R | 123 rtemis-1.4.2/rtemis/R/decomp_Isomap.R | 9 rtemis-1.4.2/rtemis/R/decomp_MDS.R |only rtemis-1.4.2/rtemis/R/decomp_NMF.R | 195 rtemis-1.4.2/rtemis/R/decomp_PCA.R | 54 rtemis-1.4.2/rtemis/R/decomp_PCoA.R |only rtemis-1.4.2/rtemis/R/decomp_UMAP.R | 32 rtemis-1.4.2/rtemis/R/decomp_dist.R |only rtemis-1.4.2/rtemis/R/decomp_metrics.R |only rtemis-1.4.2/rtemis/R/decomp_tSNE.R | 21 rtemis-1.4.2/rtemis/R/draw_linad.R |only rtemis-1.4.2/rtemis/R/explain.R |only rtemis-1.4.2/rtemis/R/fit_predict.R |only rtemis-1.4.2/rtemis/R/fmt.R | 4 rtemis-1.4.2/rtemis/R/linad.R |only rtemis-1.4.2/rtemis/R/linad_forest.R |only rtemis-1.4.2/rtemis/R/massGLM.R | 10 rtemis-1.4.2/rtemis/R/metrics.R | 94 rtemis-1.4.2/rtemis/R/plot.SupervisedSession.R |only rtemis-1.4.2/rtemis/R/plot_confusion.R |only rtemis-1.4.2/rtemis/R/plot_learning.R |only rtemis-1.4.2/rtemis/R/plot_massglm.R |only rtemis-1.4.2/rtemis/R/plot_metric.R |only rtemis-1.4.2/rtemis/R/plot_roc.R |only rtemis-1.4.2/rtemis/R/plot_true_pred.R |only rtemis-1.4.2/rtemis/R/plot_varimp.R |only rtemis-1.4.2/rtemis/R/preprocess.R | 1687 ++- rtemis-1.4.2/rtemis/R/present.R | 527 - rtemis-1.4.2/rtemis/R/read.R | 108 rtemis-1.4.2/rtemis/R/read_config.R | 345 rtemis-1.4.2/rtemis/R/record.R |only rtemis-1.4.2/rtemis/R/reexports.R | 5 rtemis-1.4.2/rtemis/R/resample.R | 310 rtemis-1.4.2/rtemis/R/resolve_hyperparameters.R |only rtemis-1.4.2/rtemis/R/result_storage.R |only rtemis-1.4.2/rtemis/R/review.R |only rtemis-1.4.2/rtemis/R/roc_curve.R |only rtemis-1.4.2/rtemis/R/rtemis-package.R | 20 rtemis-1.4.2/rtemis/R/rtemis_color_system.R | 1 rtemis-1.4.2/rtemis/R/train.R | 1403 ++ rtemis-1.4.2/rtemis/R/train_BART.R |only rtemis-1.4.2/rtemis/R/train_CART.R | 335 rtemis-1.4.2/rtemis/R/train_ConditionalSuperLearner.R |only rtemis-1.4.2/rtemis/R/train_GAM.R | 170 rtemis-1.4.2/rtemis/R/train_GLM.R | 82 rtemis-1.4.2/rtemis/R/train_GLMNET.R | 248 rtemis-1.4.2/rtemis/R/train_GLMTree.R |only rtemis-1.4.2/rtemis/R/train_HAL.R |only rtemis-1.4.2/rtemis/R/train_Isotonic.R | 115 rtemis-1.4.2/rtemis/R/train_KNN.R |only rtemis-1.4.2/rtemis/R/train_LINAD.R |only rtemis-1.4.2/rtemis/R/train_LINADForest.R |only rtemis-1.4.2/rtemis/R/train_LightCART.R | 25 rtemis-1.4.2/rtemis/R/train_LightGBM.R | 328 rtemis-1.4.2/rtemis/R/train_LightRF.R | 181 rtemis-1.4.2/rtemis/R/train_LightRuleFit.R | 201 rtemis-1.4.2/rtemis/R/train_MARS.R |only rtemis-1.4.2/rtemis/R/train_MLP.R |only rtemis-1.4.2/rtemis/R/train_MetaLearner.R |only rtemis-1.4.2/rtemis/R/train_MonotonicHAL.R |only rtemis-1.4.2/rtemis/R/train_NNLS.R |only rtemis-1.4.2/rtemis/R/train_Ranger.R | 256 rtemis-1.4.2/rtemis/R/train_SPLS.R |only rtemis-1.4.2/rtemis/R/train_SVM.R | 176 rtemis-1.4.2/rtemis/R/train_StackedLearner.R |only rtemis-1.4.2/rtemis/R/train_TabNet.R | 54 rtemis-1.4.2/rtemis/R/tune.R | 13 rtemis-1.4.2/rtemis/R/tune_GridSearch.R | 1011 +- rtemis-1.4.2/rtemis/R/utils.R | 63 rtemis-1.4.2/rtemis/R/utils_art.R | 11 rtemis-1.4.2/rtemis/R/utils_async.R | 1131 ++ rtemis-1.4.2/rtemis/R/utils_audit_props.R |only rtemis-1.4.2/rtemis/R/utils_color.R | 802 - rtemis-1.4.2/rtemis/R/utils_data.R | 5 rtemis-1.4.2/rtemis/R/utils_data.table.R | 12 rtemis-1.4.2/rtemis/R/utils_date.R | 63 rtemis-1.4.2/rtemis/R/utils_df.R | 5 rtemis-1.4.2/rtemis/R/utils_exec.R | 96 rtemis-1.4.2/rtemis/R/utils_html.R | 235 rtemis-1.4.2/rtemis/R/utils_io.R | 29 rtemis-1.4.2/rtemis/R/utils_lightgbm.R | 2 rtemis-1.4.2/rtemis/R/utils_markdown.R |only rtemis-1.4.2/rtemis/R/utils_print.R | 18 rtemis-1.4.2/rtemis/R/utils_rt.R | 58 rtemis-1.4.2/rtemis/R/utils_strings.R | 19 rtemis-1.4.2/rtemis/R/utils_supervised.R | 217 rtemis-1.4.2/rtemis/R/validate_config.R |only rtemis-1.4.2/rtemis/R/validate_data.R |only rtemis-1.4.2/rtemis/R/write_config.R | 347 rtemis-1.4.2/rtemis/R/write_text.R |only rtemis-1.4.2/rtemis/R/writeup.R |only rtemis-1.4.2/rtemis/R/writeup_hyperparameters.R |only rtemis-1.4.2/rtemis/R/zzz.R | 51 rtemis-1.4.2/rtemis/R/zzz_model_plots.R |only rtemis-1.4.2/rtemis/R/zzzz_namespace_index.R |only rtemis-1.4.2/rtemis/README.md | 77 rtemis-1.4.2/rtemis/build |only rtemis-1.4.2/rtemis/inst/checks |only rtemis-1.4.2/rtemis/inst/profile |only rtemis-1.4.2/rtemis/inst/traits |only rtemis-1.4.2/rtemis/man/HyperparameterCandidates.Rd |only rtemis-1.4.2/rtemis/man/JSONSchema_to_S7.Rd |only rtemis-1.4.2/rtemis/man/S7_dispatcher_JSONSchema.Rd |only rtemis-1.4.2/rtemis/man/S7_to_JSONSchema.Rd |only rtemis-1.4.2/rtemis/man/ai_review.Rd |only rtemis-1.4.2/rtemis/man/applicable_metrics.Rd |only rtemis-1.4.2/rtemis/man/apply_decomp.Rd | 25 rtemis-1.4.2/rtemis/man/apply_preprocessor.Rd |only rtemis-1.4.2/rtemis/man/available_algorithms.Rd | 20 rtemis-1.4.2/rtemis/man/bias_variance.Rd |only rtemis-1.4.2/rtemis/man/calibrate.Rd | 60 rtemis-1.4.2/rtemis/man/check_data.Rd | 13 rtemis-1.4.2/rtemis/man/classification_metrics.Rd | 12 rtemis-1.4.2/rtemis/man/cluster.Rd | 27 rtemis-1.4.2/rtemis/man/conformal.Rd |only rtemis-1.4.2/rtemis/man/conformal_metrics.Rd |only rtemis-1.4.2/rtemis/man/data_fingerprint.Rd |only rtemis-1.4.2/rtemis/man/data_profile.Rd |only rtemis-1.4.2/rtemis/man/ddb_collect.Rd | 6 rtemis-1.4.2/rtemis/man/ddb_data.Rd | 10 rtemis-1.4.2/rtemis/man/decomp.Rd | 31 rtemis-1.4.2/rtemis/man/decomp_metrics.Rd |only rtemis-1.4.2/rtemis/man/decomposition_traits.Rd |only rtemis-1.4.2/rtemis/man/describe.Rd | 15 rtemis-1.4.2/rtemis/man/dot-drop_meta_keys.Rd |only rtemis-1.4.2/rtemis/man/dot-get_alg_name.Rd |only rtemis-1.4.2/rtemis/man/dot-get_clust_name.Rd |only rtemis-1.4.2/rtemis/man/dot-get_decom_name.Rd |only rtemis-1.4.2/rtemis/man/dot-list_to_ClusteringConfig.Rd |only rtemis-1.4.2/rtemis/man/dot-list_to_DecompositionConfig.Rd | 23 rtemis-1.4.2/rtemis/man/dot-list_to_Hyperparameters.Rd | 15 rtemis-1.4.2/rtemis/man/dot-list_to_PreprocessorConfig.Rd |only rtemis-1.4.2/rtemis/man/dot-list_to_ResamplerConfig.Rd | 12 rtemis-1.4.2/rtemis/man/dot-list_to_SuperConfig.Rd |only rtemis-1.4.2/rtemis/man/dot-list_to_SupervisedPreprocessorConfig.Rd |only rtemis-1.4.2/rtemis/man/dot-list_to_TunerConfig.Rd | 22 rtemis-1.4.2/rtemis/man/dot-supervised_algorithms.Rd |only rtemis-1.4.2/rtemis/man/draw_linad.Rd |only rtemis-1.4.2/rtemis/man/exc.Rd | 2 rtemis-1.4.2/rtemis/man/explain.Rd |only rtemis-1.4.2/rtemis/man/explanation_methods.Rd |only rtemis-1.4.2/rtemis/man/feature_names.Rd | 2 rtemis-1.4.2/rtemis/man/features.Rd | 2 rtemis-1.4.2/rtemis/man/fit_predict.Rd |only rtemis-1.4.2/rtemis/man/fitted_config.Rd |only rtemis-1.4.2/rtemis/man/get_factor_names.Rd | 2 rtemis-1.4.2/rtemis/man/get_learning_curve.Rd |only rtemis-1.4.2/rtemis/man/get_metrics.Rd |only rtemis-1.4.2/rtemis/man/get_varimp.Rd | 22 rtemis-1.4.2/rtemis/man/grapes-BC-grapes.Rd | 19 rtemis-1.4.2/rtemis/man/inc.Rd | 2 rtemis-1.4.2/rtemis/man/ingest.Rd |only rtemis-1.4.2/rtemis/man/inspect.Rd | 2 rtemis-1.4.2/rtemis/man/is_wire_hyperparameters_set.Rd |only rtemis-1.4.2/rtemis/man/numeric_features.Rd | 2 rtemis-1.4.2/rtemis/man/one_hot2factor.Rd | 2 rtemis-1.4.2/rtemis/man/outcome.Rd | 2 rtemis-1.4.2/rtemis/man/outcome_name.Rd | 2 rtemis-1.4.2/rtemis/man/partition.Rd |only rtemis-1.4.2/rtemis/man/plot_learning.Rd |only rtemis-1.4.2/rtemis/man/plot_manhattan.Rd | 73 rtemis-1.4.2/rtemis/man/plot_metric.Rd |only rtemis-1.4.2/rtemis/man/plot_roc.Rd | 38 rtemis-1.4.2/rtemis/man/plot_session.Rd |only rtemis-1.4.2/rtemis/man/plot_true_pred.Rd | 51 rtemis-1.4.2/rtemis/man/plot_varimp.Rd | 65 rtemis-1.4.2/rtemis/man/preprocess.Rd | 71 rtemis-1.4.2/rtemis/man/preprocessed.Rd | 2 rtemis-1.4.2/rtemis/man/present.Rd | 65 rtemis-1.4.2/rtemis/man/read.Rd | 8 rtemis-1.4.2/rtemis/man/read_config.Rd | 23 rtemis-1.4.2/rtemis/man/read_result.Rd |only rtemis-1.4.2/rtemis/man/reconstruct.Rd |only rtemis-1.4.2/rtemis/man/record.Rd |only rtemis-1.4.2/rtemis/man/reexports.Rd | 3 rtemis-1.4.2/rtemis/man/regression_metrics.Rd | 4 rtemis-1.4.2/rtemis/man/resample.Rd | 23 rtemis-1.4.2/rtemis/man/review.Rd |only rtemis-1.4.2/rtemis/man/roc_curve.Rd | 17 rtemis-1.4.2/rtemis/man/rtemis-package.Rd | 20 rtemis-1.4.2/rtemis/man/rtemis_conditions.Rd | 3 rtemis-1.4.2/rtemis/man/same_data.Rd |only rtemis-1.4.2/rtemis/man/se.Rd |only rtemis-1.4.2/rtemis/man/session_kind_colors.Rd |only rtemis-1.4.2/rtemis/man/session_timeline.Rd |only rtemis-1.4.2/rtemis/man/set_positive_class.Rd | 6 rtemis-1.4.2/rtemis/man/setup_ARFFIngest.Rd |only rtemis-1.4.2/rtemis/man/setup_ASWCriterion.Rd |only rtemis-1.4.2/rtemis/man/setup_Autoencoder.Rd |only rtemis-1.4.2/rtemis/man/setup_BART.Rd |only rtemis-1.4.2/rtemis/man/setup_Bootstrap.Rd |only rtemis-1.4.2/rtemis/man/setup_CART.Rd | 30 rtemis-1.4.2/rtemis/man/setup_CHCriterion.Rd |only rtemis-1.4.2/rtemis/man/setup_CMeans.Rd | 26 rtemis-1.4.2/rtemis/man/setup_CQR.Rd |only rtemis-1.4.2/rtemis/man/setup_CUDA.Rd |only rtemis-1.4.2/rtemis/man/setup_CVPlus.Rd |only rtemis-1.4.2/rtemis/man/setup_ClusterConfig.Rd | 18 rtemis-1.4.2/rtemis/man/setup_ConditionalSuperLearner.Rd |only rtemis-1.4.2/rtemis/man/setup_Custom.Rd |only rtemis-1.4.2/rtemis/man/setup_DBSCAN.Rd | 30 rtemis-1.4.2/rtemis/man/setup_DTAIngest.Rd |only rtemis-1.4.2/rtemis/man/setup_DecomposeConfig.Rd | 16 rtemis-1.4.2/rtemis/man/setup_DelimitedIngest.Rd |only rtemis-1.4.2/rtemis/man/setup_FutureExecution.Rd |only rtemis-1.4.2/rtemis/man/setup_GAM.Rd | 4 rtemis-1.4.2/rtemis/man/setup_GLM.Rd | 2 rtemis-1.4.2/rtemis/man/setup_GLMNET.Rd | 20 rtemis-1.4.2/rtemis/man/setup_GLMTree.Rd |only rtemis-1.4.2/rtemis/man/setup_GMM.Rd |only rtemis-1.4.2/rtemis/man/setup_GridSearch.Rd | 25 rtemis-1.4.2/rtemis/man/setup_GroupPartition.Rd |only rtemis-1.4.2/rtemis/man/setup_HAL.Rd |only rtemis-1.4.2/rtemis/man/setup_HOPACH.Rd |only rtemis-1.4.2/rtemis/man/setup_HardCL.Rd | 11 rtemis-1.4.2/rtemis/man/setup_ICA.Rd | 31 rtemis-1.4.2/rtemis/man/setup_Isomap.Rd | 18 rtemis-1.4.2/rtemis/man/setup_Isotonic.Rd | 4 rtemis-1.4.2/rtemis/man/setup_KFold.Rd |only rtemis-1.4.2/rtemis/man/setup_KMeans.Rd | 11 rtemis-1.4.2/rtemis/man/setup_KNN.Rd |only rtemis-1.4.2/rtemis/man/setup_LINAD.Rd |only rtemis-1.4.2/rtemis/man/setup_LINADForest.Rd |only rtemis-1.4.2/rtemis/man/setup_LOOCV.Rd |only rtemis-1.4.2/rtemis/man/setup_LightCART.Rd | 191 rtemis-1.4.2/rtemis/man/setup_LightGBM.Rd | 281 rtemis-1.4.2/rtemis/man/setup_LightRF.Rd | 229 rtemis-1.4.2/rtemis/man/setup_LightRuleFit.Rd | 279 rtemis-1.4.2/rtemis/man/setup_LinearSVM.Rd | 6 rtemis-1.4.2/rtemis/man/setup_MARS.Rd |only rtemis-1.4.2/rtemis/man/setup_MDS.Rd |only rtemis-1.4.2/rtemis/man/setup_MLP.Rd |only rtemis-1.4.2/rtemis/man/setup_MiraiExecution.Rd |only rtemis-1.4.2/rtemis/man/setup_ModalityStacking.Rd |only rtemis-1.4.2/rtemis/man/setup_MonotonicHAL.Rd |only rtemis-1.4.2/rtemis/man/setup_MultiASWCriterion.Rd |only rtemis-1.4.2/rtemis/man/setup_NMF.Rd | 17 rtemis-1.4.2/rtemis/man/setup_NNLS.Rd |only rtemis-1.4.2/rtemis/man/setup_NeuralGas.Rd | 11 rtemis-1.4.2/rtemis/man/setup_Nystrom.Rd |only rtemis-1.4.2/rtemis/man/setup_PAM.Rd |only rtemis-1.4.2/rtemis/man/setup_PAMK.Rd |only rtemis-1.4.2/rtemis/man/setup_PCA.Rd | 10 rtemis-1.4.2/rtemis/man/setup_PCoA.Rd |only rtemis-1.4.2/rtemis/man/setup_ParquetIngest.Rd |only rtemis-1.4.2/rtemis/man/setup_PredefinedPartition.Rd |only rtemis-1.4.2/rtemis/man/setup_Preprocessor.Rd | 176 rtemis-1.4.2/rtemis/man/setup_RDSIngest.Rd |only rtemis-1.4.2/rtemis/man/setup_RadialSVM.Rd | 8 rtemis-1.4.2/rtemis/man/setup_RandomPartition.Rd |only rtemis-1.4.2/rtemis/man/setup_Ranger.Rd | 51 rtemis-1.4.2/rtemis/man/setup_Resampler.Rd | 57 rtemis-1.4.2/rtemis/man/setup_SHAP.Rd |only rtemis-1.4.2/rtemis/man/setup_SPLS.Rd |only rtemis-1.4.2/rtemis/man/setup_SerialExecution.Rd |only rtemis-1.4.2/rtemis/man/setup_SpectralLaplace.Rd |only rtemis-1.4.2/rtemis/man/setup_SpectralLocal.Rd |only rtemis-1.4.2/rtemis/man/setup_SpectralRBF.Rd |only rtemis-1.4.2/rtemis/man/setup_SplitConformal.Rd |only rtemis-1.4.2/rtemis/man/setup_StratBoot.Rd |only rtemis-1.4.2/rtemis/man/setup_StratSub.Rd |only rtemis-1.4.2/rtemis/man/setup_SuperConfig.Rd | 56 rtemis-1.4.2/rtemis/man/setup_SuperConfigLive.Rd | 35 rtemis-1.4.2/rtemis/man/setup_SuperLearner.Rd |only rtemis-1.4.2/rtemis/man/setup_SupervisedPreprocessor.Rd |only rtemis-1.4.2/rtemis/man/setup_TabNet.Rd | 82 rtemis-1.4.2/rtemis/man/setup_TimePartition.Rd |only rtemis-1.4.2/rtemis/man/setup_UMAP.Rd | 19 rtemis-1.4.2/rtemis/man/setup_VariationalAutoencoder.Rd |only rtemis-1.4.2/rtemis/man/setup_XLSXIngest.Rd |only rtemis-1.4.2/rtemis/man/setup_tSNE.Rd | 40 rtemis-1.4.2/rtemis/man/shap_by_level.Rd |only rtemis-1.4.2/rtemis/man/shap_case.Rd |only rtemis-1.4.2/rtemis/man/shap_long.Rd |only rtemis-1.4.2/rtemis/man/to_json.Rd | 23 rtemis-1.4.2/rtemis/man/to_markdown.Rd |only rtemis-1.4.2/rtemis/man/train.Rd | 91 rtemis-1.4.2/rtemis/man/tune_over.Rd |only rtemis-1.4.2/rtemis/man/tuning_grid.Rd |only rtemis-1.4.2/rtemis/man/validate_config.Rd |only rtemis-1.4.2/rtemis/man/varimp_table.Rd |only rtemis-1.4.2/rtemis/man/write_config.Rd | 13 rtemis-1.4.2/rtemis/man/write_record.Rd |only rtemis-1.4.2/rtemis/man/write_result.Rd |only rtemis-1.4.2/rtemis/man/write_text.Rd |only rtemis-1.4.2/rtemis/man/writeup.Rd |only rtemis-1.4.2/rtemis/tests/ci |only rtemis-1.4.2/rtemis/tests/testthat-cran.R |only rtemis-1.4.2/rtemis/tests/testthat-fitting.R |only rtemis-1.4.2/rtemis/tests/testthat-general.R |only rtemis-1.4.2/rtemis/tests/testthat-supervised.R |only rtemis-1.4.2/rtemis/tests/testthat/_problems |only rtemis-1.4.2/rtemis/tests/testthat/fixtures |only rtemis-1.4.2/rtemis/tests/testthat/helper-decomposition.R |only rtemis-1.4.2/rtemis/tests/testthat/helper-execution.R |only rtemis-1.4.2/rtemis/tests/testthat/helper-torch.R |only rtemis-1.4.2/rtemis/tests/testthat/helper-varimp.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_plot_SupervisedSession.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_plot_boundary.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_plot_colors.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_plot_confusion.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_plot_learning.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_plot_massglm.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_plot_metric.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_plot_roc.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_plot_true_pred.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_plot_varimp.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_present.R |only rtemis-1.4.2/rtemis/tests/testthat/test-model_resampled_classification.R |only rtemis-1.4.2/rtemis/tests/testthat/test_AIReview.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ArtifactInheritance.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Autoencoder.R |only rtemis-1.4.2/rtemis/tests/testthat/test_BackendArguments.R |only rtemis-1.4.2/rtemis/tests/testthat/test_BiasVariance.R |only rtemis-1.4.2/rtemis/tests/testthat/test_CIGroups.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Calibration.R | 426 rtemis-1.4.2/rtemis/tests/testthat/test_CandidateWire.R |only rtemis-1.4.2/rtemis/tests/testthat/test_CheckData.R | 96 rtemis-1.4.2/rtemis/tests/testthat/test_ChecksArtifact.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ClusterConfig.R | 59 rtemis-1.4.2/rtemis/tests/testthat/test_Clustering.R | 773 + rtemis-1.4.2/rtemis/tests/testthat/test_ConfigProps.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Conformal.R |only rtemis-1.4.2/rtemis/tests/testthat/test_DataFingerprint.R |only rtemis-1.4.2/rtemis/tests/testthat/test_DataProfile.R |only rtemis-1.4.2/rtemis/tests/testthat/test_DecomposeConfig.R | 64 rtemis-1.4.2/rtemis/tests/testthat/test_Decomposition.R | 724 + rtemis-1.4.2/rtemis/tests/testthat/test_DecompositionMetrics.R |only rtemis-1.4.2/rtemis/tests/testthat/test_DecompositionTraits.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Defaults.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ExecutionConfig.R | 317 rtemis-1.4.2/rtemis/tests/testthat/test_ExplainSupervised.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Explanation.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ExplanationMethods.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ExternalStorage.R |only rtemis-1.4.2/rtemis/tests/testthat/test_GenericArgForcing.R |only rtemis-1.4.2/rtemis/tests/testthat/test_GetMetrics.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Hyperparameters.R | 1155 ++ rtemis-1.4.2/rtemis/tests/testthat/test_HyperparametersSet.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Ingest.R |only rtemis-1.4.2/rtemis/tests/testthat/test_LINAD.R |only rtemis-1.4.2/rtemis/tests/testthat/test_LINADForest.R |only rtemis-1.4.2/rtemis/tests/testthat/test_LINAD_differential.R |only rtemis-1.4.2/rtemis/tests/testthat/test_LearningCurve.R |only rtemis-1.4.2/rtemis/tests/testthat/test_LightGBMParameters.R |only rtemis-1.4.2/rtemis/tests/testthat/test_LightRF.R |only rtemis-1.4.2/rtemis/tests/testthat/test_MetadataReads.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Metrics.R | 164 rtemis-1.4.2/rtemis/tests/testthat/test_PartitionConfig.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Preprocessor.R | 1284 ++ rtemis-1.4.2/rtemis/tests/testthat/test_ProfileFixture.R |only rtemis-1.4.2/rtemis/tests/testthat/test_PropDocs.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Props.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Props_read.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Provenance.R |only rtemis-1.4.2/rtemis/tests/testthat/test_RecordDocuments.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ReferenceProps.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ResampledResults.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Resampler.R | 254 rtemis-1.4.2/rtemis/tests/testthat/test_ResamplerCompatibility.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ResolvedHyperparameters.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ResultArrays.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ResultRules.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ResultValues.R |only rtemis-1.4.2/rtemis/tests/testthat/test_RuntimeState.R |only rtemis-1.4.2/rtemis/tests/testthat/test_SchemaCatalog.R |only rtemis-1.4.2/rtemis/tests/testthat/test_SchemaContract.R |only rtemis-1.4.2/rtemis/tests/testthat/test_SchemaRules.R |only rtemis-1.4.2/rtemis/tests/testthat/test_SemanticRules.R |only rtemis-1.4.2/rtemis/tests/testthat/test_SessionSidecar.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Session_timeline.R |only rtemis-1.4.2/rtemis/tests/testthat/test_SuperConfig.R | 284 rtemis-1.4.2/rtemis/tests/testthat/test_SuperConfigLive.R | 68 rtemis-1.4.2/rtemis/tests/testthat/test_Supervised.R | 4740 +++++++++- rtemis-1.4.2/rtemis/tests/testthat/test_SupervisedReview.R |only rtemis-1.4.2/rtemis/tests/testthat/test_SupervisedWriteup.R |only rtemis-1.4.2/rtemis/tests/testthat/test_TrainPreflight.R |only rtemis-1.4.2/rtemis/tests/testthat/test_Tuner.R | 300 rtemis-1.4.2/rtemis/tests/testthat/test_ValidateConfig.R |only rtemis-1.4.2/rtemis/tests/testthat/test_ValidateConfigFixtures.R |only rtemis-1.4.2/rtemis/tests/testthat/test_VariableImportance.R |only rtemis-1.4.2/rtemis/tests/testthat/test_checks.R | 80 rtemis-1.4.2/rtemis/tests/testthat/test_draw.R | 674 - rtemis-1.4.2/rtemis/tests/testthat/test_fit_predict.R |only rtemis-1.4.2/rtemis/tests/testthat/test_massGLM.R | 38 rtemis-1.4.2/rtemis/tests/testthat/test_parallel_outer.R |only rtemis-1.4.2/rtemis/tests/testthat/test_read.R |only rtemis-1.4.2/rtemis/tests/testthat/test_shared_memory.R |only rtemis-1.4.2/rtemis/tests/testthat/test_to_json.R | 47 rtemis-1.4.2/rtemis/tests/testthat/test_tune_parallel.R |only 552 files changed, 23814 insertions(+), 4583 deletions(-)
Title: Download, Model and Analyze 'OpenStreetMap' Street Networks
Description: A 'tidyverse'-friendly toolkit, inspired by the 'OSMnx' 'Python'
library, to download, model, simplify, analyze and visualize street networks
and other geospatial features from 'OpenStreetMap'. Build routable graphs
from a place name, address, point or bounding box; simplify topology;
compute shortest paths, isochrones and urban metrics (intersection density,
circuity, street-orientation entropy, centrality); and export to 'sf',
'sfnetworks' and 'MapLibre'. Heavy graph computation is performed by a
bundled 'Rust' core.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Julia Nascimento Barreto [aut] ,
StrategicProjects [cph, fnd],
The extendr authors [cph] ,
David Tolnay [cph] ,
Alex Crichton [cph] [...truncated...]
Maintainer: Andre Leite <leite@castlab.org>
Diff between osmnxr versions 0.1.1 dated 2026-07-05 and 0.1.2 dated 2026-10-19
DESCRIPTION | 37 +++++++---- LICENSE | 2 MD5 | 16 ++--- NAMESPACE | 1 NEWS.md | 10 +++ R/osm_graph.R | 137 ++++++++++++++++++++++++++++++++++++++++++++ README.md | 4 - man/osmnxr-package.Rd | 13 ++-- man/ox_union.Rd |only tests/testthat/test-union.R |only 10 files changed, 190 insertions(+), 30 deletions(-)
Title: Multi-Task Learning with Orthogonal Constraints
Description: Fits regularised multi-task learning models where relationships
between tasks are controlled via orthogonality or disjoint-support constraints.
Supports regression, binary classification, and censored survival data.
In survival mode, time-to-event outcomes are converted into binary labels at
user-defined thresholds, enabling the discovery of features with time-varying
effects that standard proportional-hazards models cannot detect.
Implements the penalty described in Vervier et al. (2014)
<https://hal.science/hal-00985654>.
Author: Kevin Vervier [aut, cre],
Novartis Pharma AG [cph, fnd]
Maintainer: Kevin Vervier <kevin.vervier@novartis.com>
Diff between orthoMTL versions 0.1.0 dated 2026-08-23 and 0.1.1 dated 2026-10-19
DESCRIPTION | 8 + MD5 | 12 +- NEWS.md | 25 +++++ R/nnmaxheap.R | 9 +- inst/doc/introduction.html | 66 +++++++-------- man/orthoMTL-package.Rd | 8 + tests/testthat/test-metrics.R | 179 +++++++++++++++++++++++++----------------- 7 files changed, 191 insertions(+), 116 deletions(-)
Title: Parallelize Common Functions via One Magic Function
Description: The futurize() function <doi:10.48550/arXiv.2601.17578> turns sequential map-reduce functions such as base::lapply(), purrr::map(), 'foreach::foreach() %do% { ... }' into concurrent alternatives, providing you with a simple, straightforward path to scalable parallel computing via the 'future' ecosystem <doi:10.32614/RJ-2021-048>. By combining this transpiler function with R's native pipe operator, you have a convenient way for speeding up iterative computations with minimal refactoring, e.g. 'lapply(xs, fcn) |> futurize()', 'purrr::map(xs, fcn) |> futurize()', and 'foreach::foreach(x = xs) %do% { fcn(x) } |> futurize()'. Other map-reduce packages that can be "futurized" are 'BiocParallel', 'plyr', 'crossmap', 'pbapply' packages. There is also support for a growing set of domain-specific packages on CRAN (e.g. 'boot', 'caret', 'DiceKriging', 'ez', 'fgsea', 'fwb', 'gamlss', 'glmmTMB', 'glmnet', 'kernelshap', 'lme4', 'metafor', 'mgcv', 'modelsummary', 'parameters', 'p [...truncated...]
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between futurize versions 1.0.0 dated 2026-06-12 and 1.1.0 dated 2026-10-19
futurize-1.0.0/futurize/.aspell |only futurize-1.0.0/futurize/README.md |only futurize-1.1.0/futurize/DESCRIPTION | 20 futurize-1.1.0/futurize/MD5 | 222 +++++----- futurize-1.1.0/futurize/NAMESPACE | 13 futurize-1.1.0/futurize/NEWS.md | 72 +++ futurize-1.1.0/futurize/R/000.bquote.R | 3 futurize-1.1.0/futurize/R/000.import-future.R |only futurize-1.1.0/futurize/R/000.import.R | 11 futurize-1.1.0/futurize/R/addons-BiocParallel.R | 2 futurize-1.1.0/futurize/R/addons-GSVA.R | 43 + futurize-1.1.0/futurize/R/addons-Sim.DiffProc.R | 12 futurize-1.1.0/futurize/R/addons-boot.R | 11 futurize-1.1.0/futurize/R/addons-foreach.R | 26 - futurize-1.1.0/futurize/R/addons-fwb.R | 11 futurize-1.1.0/futurize/R/addons-gamlss.R | 14 futurize-1.1.0/futurize/R/addons-lme4.R | 37 + futurize-1.1.0/futurize/R/addons-parameters.R | 10 futurize-1.1.0/futurize/R/addons-plyr.R | 55 ++ futurize-1.1.0/futurize/R/addons-rugarch.R | 13 futurize-1.1.0/futurize/R/addons-terra.R |only futurize-1.1.0/futurize/R/find_s3_method.R | 132 +++++ futurize-1.1.0/futurize/R/find_s4_method.R | 20 futurize-1.1.0/futurize/R/futurize.R | 38 + futurize-1.1.0/futurize/R/is_s3_generic.R | 3 futurize-1.1.0/futurize/R/make_addon_transpilers.R | 3 futurize-1.1.0/futurize/R/make_options_for_doFuture.R | 5 futurize-1.1.0/futurize/R/make_options_for_future.apply.R | 8 futurize-1.1.0/futurize/R/make_options_for_makeClusterFuture.R | 11 futurize-1.1.0/futurize/R/parse_call.R | 15 futurize-1.1.0/futurize/R/register_all_transpilers.R | 1 futurize-1.1.0/futurize/R/transpile.R | 155 ++++++ futurize-1.1.0/futurize/R/transpiler-hooks.R |only futurize-1.1.0/futurize/R/transpiler-unwrap.R | 7 futurize-1.1.0/futurize/R/utils-debug.R | 62 ++ futurize-1.1.0/futurize/R/utils.R | 3 futurize-1.1.0/futurize/R/vignette_engine.R | 3 futurize-1.1.0/futurize/R/zzz.R | 2 futurize-1.1.0/futurize/build/vignette.rds |binary futurize-1.1.0/futurize/inst/CITATION | 5 futurize-1.1.0/futurize/inst/WORDLIST | 4 futurize-1.1.0/futurize/inst/doc/futurize-11-apply.html | 33 - futurize-1.1.0/futurize/inst/doc/futurize-11-apply.md | 32 - futurize-1.1.0/futurize/inst/doc/futurize-81-GSVA.html | 23 - futurize-1.1.0/futurize/inst/doc/futurize-81-GSVA.md | 29 + futurize-1.1.0/futurize/inst/doc/futurize-81-terra.html |only futurize-1.1.0/futurize/inst/doc/futurize-81-terra.md |only futurize-1.1.0/futurize/inst/testme/test-api.R | 62 ++ futurize-1.1.0/futurize/inst/testme/test-doFuture-foreach_dofuture,errors.R | 58 -- futurize-1.1.0/futurize/inst/testme/test-doFuture-foreach_dofuture,globals.R | 134 ++---- futurize-1.1.0/futurize/inst/testme/test-doFuture-foreach_dofuture,nested_colon.R | 4 futurize-1.1.0/futurize/inst/testme/test-doFuture-foreach_dofuture,nested_dofuture.R | 4 futurize-1.1.0/futurize/inst/testme/test-doFuture-foreach_dofuture,rng.R | 4 futurize-1.1.0/futurize/inst/testme/test-doFuture-foreach_dofuture.R | 4 futurize-1.1.0/futurize/inst/testme/test-doFuture-times.R | 4 futurize-1.1.0/futurize/inst/testme/test-future.apply-future_lapply,RNG.R | 185 ++++---- futurize-1.1.0/futurize/inst/testme/test-future.apply-options,nested.R | 4 futurize-1.1.0/futurize/inst/testme/test-future.apply-stdout.R | 1 futurize-1.1.0/futurize/inst/testme/test-futurize-BiocParallel.R | 10 futurize-1.1.0/futurize/inst/testme/test-futurize-DESeq2.R | 32 + futurize-1.1.0/futurize/inst/testme/test-futurize-DiceKriging.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-GSVA.R | 68 ++- futurize-1.1.0/futurize/inst/testme/test-futurize-GenomicAlignments.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-Rsamtools.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-Sim.DiffProc.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-SimDesign.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-SingleCellExperiment.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-SuperLearner.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-TSP.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-base-stats.R | 8 futurize-1.1.0/futurize/inst/testme/test-futurize-boot.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-caret.R | 11 futurize-1.1.0/futurize/inst/testme/test-futurize-crossmap.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-duplicated-arguments.R |only futurize-1.1.0/futurize/inst/testme/test-futurize-ez.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-fgsea.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-foreach.R | 10 futurize-1.1.0/futurize/inst/testme/test-futurize-fwb.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-gamlss.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-glmmTMB.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-glmnet.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-kernelshap.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-lme4.R | 31 + futurize-1.1.0/futurize/inst/testme/test-futurize-metafor.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-mgcv.R | 19 futurize-1.1.0/futurize/inst/testme/test-futurize-modelsummary.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-parameters.R | 11 futurize-1.1.0/futurize/inst/testme/test-futurize-partykit.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-pbapply.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-pls.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-plyr-paropts.R |only futurize-1.1.0/futurize/inst/testme/test-futurize-plyr-sequential.R |only futurize-1.1.0/futurize/inst/testme/test-futurize-plyr.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-purrr.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-pvclust.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-riskRegression.R | 20 futurize-1.1.0/futurize/inst/testme/test-futurize-rugarch.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-sandwich.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-scater.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-scuttle.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-seriation.R | 10 futurize-1.1.0/futurize/inst/testme/test-futurize-shapr.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-stars.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-strucchange.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-sva.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-terra.R |only futurize-1.1.0/futurize/inst/testme/test-futurize-tm.R | 5 futurize-1.1.0/futurize/inst/testme/test-futurize-user-future-options.R |only futurize-1.1.0/futurize/inst/testme/test-futurize-vegan.R | 9 futurize-1.1.0/futurize/inst/testme/test-futurize-wrapped.R | 19 futurize-1.1.0/futurize/inst/testme/test-internals-make_options_for_nnn.R | 45 ++ futurize-1.1.0/futurize/man/figures/cran-terra-logo.webp |only futurize-1.1.0/futurize/man/futurize.Rd | 34 + futurize-1.1.0/futurize/man/transpile.Rd | 2 futurize-1.1.0/futurize/tests/test-futurize-duplicated-arguments.R |only futurize-1.1.0/futurize/tests/test-futurize-plyr-paropts.R |only futurize-1.1.0/futurize/tests/test-futurize-plyr-sequential.R |only futurize-1.1.0/futurize/tests/test-futurize-terra.R |only futurize-1.1.0/futurize/tests/test-futurize-user-future-options.R |only futurize-1.1.0/futurize/vignettes/futurize-11-apply.md | 32 - futurize-1.1.0/futurize/vignettes/futurize-81-GSVA.md | 29 + futurize-1.1.0/futurize/vignettes/futurize-81-terra.md |only 122 files changed, 1663 insertions(+), 540 deletions(-)
Title: Assessing False Discovery Rate Claims in Proteomics
Description: Provides scope, calibration and stability diagnostics to assess false discovery rate (FDR) claims in peptide and protein identification workflows based on target-decoy competition and related confidence measures. Includes the recomputed decoy ratio of the reported list, accepted decoy counts and local decoy support, threshold elasticity, posterior error probability (PEP) concordance with the decoys, equal-chance checks and p-value calibration, with an HTML report. If you used this package in your research, please cite the associated preprint <doi:10.64898/2026.04.16.718468>. Detailed examples of using this package can also be found on the GitHub repository (<https://github.com/Jacky11/diagFDR>).
Author: Quentin Giai Gianetto [aut, cre]
Maintainer: Quentin Giai Gianetto <quentin.giaigianetto@pasteur.fr>
Diff between diagFDR versions 0.1.1 dated 2026-04-27 and 0.1.2 dated 2026-10-19
DESCRIPTION | 10 MD5 | 145 ++++++------ NAMESPACE | 6 NEWS.md |only R/alert_basis.R |only R/class_dfdr_tbl.R | 14 - R/dfdr_summary_headline.R | 9 R/diag_calibration.R | 115 ++++++++- R/diag_stability.R | 17 + R/flag_headline.R | 152 +++++++----- R/interpretation.R |only R/io_diann.R | 57 +++- R/io_mokapot.R | 23 + R/plots.R | 16 - R/render_report.R | 184 ++++++++------- R/run_all.R | 188 ++++++++++----- R/score_to_pvalue.R | 64 ++++- R/zzz.R | 2 inst/doc/diann.R | 12 - inst/doc/diann.Rmd | 20 + inst/doc/diann.html | 144 ++++++------ inst/doc/maxquant.Rmd | 2 inst/doc/maxquant.html | 34 +- inst/doc/mokapot.Rmd | 2 inst/doc/mokapot.html | 41 +-- inst/doc/mzid.html | 28 +- inst/doc/spectronaut.html | 26 +- inst/templates/dfdr_report.Rmd | 454 ++++++++++++++++++++++++++++++-------- man/add_pseudo_pvalues_to_list.Rd | 15 + man/as_dfdr_tbl.Rd | 19 + man/compete_max_score.Rd | 2 man/dfdr_alert_basis.Rd |only man/dfdr_bh_diagnostics.Rd | 16 - man/dfdr_bh_elasticity.Rd | 14 - man/dfdr_elasticity.Rd | 10 man/dfdr_equal_chance_qbands.Rd | 27 +- man/dfdr_headline.Rd | 10 man/dfdr_ipe.Rd |only man/dfdr_local_tail.Rd | 16 - man/dfdr_p_calibration.Rd | 16 - man/dfdr_p_interpretation.Rd |only man/dfdr_p_summary.Rd |only man/dfdr_pep_decoy_sanity.Rd | 14 - man/dfdr_pep_interpretation.Rd |only man/dfdr_pep_reliability.Rd | 29 +- man/dfdr_pep_reliability_tdc.Rd | 14 - man/dfdr_pep_summary.Rd |only man/dfdr_pi0_storey.Rd | 14 - man/dfdr_plot_cv.Rd | 10 man/dfdr_plot_equal_chance.Rd | 2 man/dfdr_plot_fdrhat_pi0.Rd | 8 man/dfdr_plot_p_calibration2.Rd | 8 man/dfdr_render_report.Rd | 2 man/dfdr_run_all.Rd | 53 +++- man/dfdr_run_jaccard.Rd | 6 man/dfdr_scope_disagreement.Rd | 8 man/dfdr_sumpep.Rd | 8 man/dfdr_write_report.Rd | 12 - man/diann_global_minrunq.Rd | 7 man/diann_global_precursor.Rd | 17 + man/diann_runxprecursor.Rd | 7 man/dot-bh_threshold.Rd | 2 man/flag_headline.Rd | 67 +++-- man/mokapot_competed_universe.Rd | 16 + man/mzid_parse_psms.Rd | 4 man/mzid_score_direction.Rd | 4 man/mzid_to_internal_score.Rd | 2 man/read_dfdr_maxquant_msms.Rd | 16 - man/read_dfdr_mzid.Rd | 12 - man/score_to_pvalue.Rd | 16 - man/spectronaut_runxprecursor.Rd | 3 man/tdc_qvalues.Rd | 2 tests |only vignettes/diann.Rmd | 20 + vignettes/maxquant.Rmd | 2 vignettes/mokapot.Rmd | 2 76 files changed, 1527 insertions(+), 770 deletions(-)
Title: Interactive 3D Visualization of Molecular Structures
Description: Provides an 'htmlwidgets' <https://www.htmlwidgets.org/> interface to 'NGL.js' <https://nglviewer.org/ngl/api/>.
'NGLVieweR' can be used to visualize and interact with protein databank ('PDB') and structural files in R and Shiny applications.
It includes a set of API functions to manipulate the viewer after creation in Shiny.
Author: Niels van der Velden [aut, cre],
Alexander Rose [cph] ,
three.js authors [cph] ,
Mol* contributors [cph] ,
Gregor Aisch [cph] ,
Cynthia Brewer [cph] ,
Mark Harrower [cph] ,
The Pennsylvania State University [cph] ,
Alexandru Mărășteanu [cph] ,
Miller [...truncated...]
Maintainer: Niels van der Velden <n.s.j.vandervelden@gmail.com>
Diff between NGLVieweR versions 1.4.0 dated 2024-11-22 and 1.5.0 dated 2026-10-19
NGLVieweR-1.4.0/NGLVieweR/inst/htmlwidgets/lib/NGL-2.0.0 |only NGLVieweR-1.5.0/NGLVieweR/DESCRIPTION | 58 NGLVieweR-1.5.0/NGLVieweR/MD5 | 131 NGLVieweR-1.5.0/NGLVieweR/NAMESPACE | 4 NGLVieweR-1.5.0/NGLVieweR/NEWS.md | 43 NGLVieweR-1.5.0/NGLVieweR/R/NGLVieweR-shiny.R | 2 NGLVieweR-1.5.0/NGLVieweR/R/NGLVieweR.R | 234 - NGLVieweR-1.5.0/NGLVieweR/R/NGLVieweR_example.R | 2 NGLVieweR-1.5.0/NGLVieweR/R/api.R | 106 NGLVieweR-1.5.0/NGLVieweR/R/colorByValue.R |only NGLVieweR-1.5.0/NGLVieweR/R/utils.R |only NGLVieweR-1.5.0/NGLVieweR/R/zzz.R |only NGLVieweR-1.5.0/NGLVieweR/README.md | 9 NGLVieweR-1.5.0/NGLVieweR/inst/COPYRIGHTS |only NGLVieweR-1.5.0/NGLVieweR/inst/doc/NGLVieweR.R | 30 NGLVieweR-1.5.0/NGLVieweR/inst/doc/NGLVieweR.Rmd | 72 NGLVieweR-1.5.0/NGLVieweR/inst/doc/NGLVieweR.html | 1577 ++++++---- NGLVieweR-1.5.0/NGLVieweR/inst/examples/multiStructureSelection/app.R | 27 NGLVieweR-1.5.0/NGLVieweR/inst/examples/updateFullscreen/app.R | 18 NGLVieweR-1.5.0/NGLVieweR/inst/htmlwidgets/NGLVieweR.js | 514 ++- NGLVieweR-1.5.0/NGLVieweR/inst/htmlwidgets/NGLVieweR.yaml | 7 NGLVieweR-1.5.0/NGLVieweR/inst/htmlwidgets/lib/NGL-2.5.0 |only NGLVieweR-1.5.0/NGLVieweR/inst/htmlwidgets/lib/helperFunctions.js | 93 NGLVieweR-1.5.0/NGLVieweR/man/NGLVieweR-shiny.Rd | 2 NGLVieweR-1.5.0/NGLVieweR/man/NGLVieweR.Rd | 21 NGLVieweR-1.5.0/NGLVieweR/man/NGLVieweR_example.Rd | 2 NGLVieweR-1.5.0/NGLVieweR/man/addRepresentation.Rd | 30 NGLVieweR-1.5.0/NGLVieweR/man/addSelection.Rd | 25 NGLVieweR-1.5.0/NGLVieweR/man/addStructure.Rd | 13 NGLVieweR-1.5.0/NGLVieweR/man/colorByValue.Rd |only NGLVieweR-1.5.0/NGLVieweR/man/reexports.Rd | 4 NGLVieweR-1.5.0/NGLVieweR/man/removeSelection.Rd | 6 NGLVieweR-1.5.0/NGLVieweR/man/setFocus.Rd | 18 NGLVieweR-1.5.0/NGLVieweR/man/setPosition.Rd | 8 NGLVieweR-1.5.0/NGLVieweR/man/setQuality.Rd | 15 NGLVieweR-1.5.0/NGLVieweR/man/setRock.Rd | 14 NGLVieweR-1.5.0/NGLVieweR/man/setRotation.Rd | 8 NGLVieweR-1.5.0/NGLVieweR/man/setScale.Rd | 8 NGLVieweR-1.5.0/NGLVieweR/man/setSpin.Rd | 14 NGLVieweR-1.5.0/NGLVieweR/man/setSuperpose.Rd | 3 NGLVieweR-1.5.0/NGLVieweR/man/snapShot.Rd | 10 NGLVieweR-1.5.0/NGLVieweR/man/stageParameters.Rd | 35 NGLVieweR-1.5.0/NGLVieweR/man/updateColor.Rd | 8 NGLVieweR-1.5.0/NGLVieweR/man/updateFocus.Rd | 10 NGLVieweR-1.5.0/NGLVieweR/man/updateFullscreen.Rd | 42 NGLVieweR-1.5.0/NGLVieweR/man/updateRepresentation.Rd | 8 NGLVieweR-1.5.0/NGLVieweR/man/updateRock.Rd | 10 NGLVieweR-1.5.0/NGLVieweR/man/updateSelection.Rd | 10 NGLVieweR-1.5.0/NGLVieweR/man/updateSpin.Rd | 10 NGLVieweR-1.5.0/NGLVieweR/man/updateStage.Rd | 12 NGLVieweR-1.5.0/NGLVieweR/man/updateVisibility.Rd | 8 NGLVieweR-1.5.0/NGLVieweR/man/updateZoomMove.Rd | 24 NGLVieweR-1.5.0/NGLVieweR/man/zoomMove.Rd | 15 NGLVieweR-1.5.0/NGLVieweR/tests |only NGLVieweR-1.5.0/NGLVieweR/vignettes/NGLVieweR.Rmd | 72 55 files changed, 2308 insertions(+), 1084 deletions(-)
Title: Estimate Parameters of Mixtures of Logistic Regressions
Description: Mixture of logistic regressions parameters (H)estimation with
(U)spectral methods. The main methods take d-dimensional inputs and a vector
of binary outputs, and return parameters according to the GLMs mixture model
(General Linear Model). For more details see chapter 3 in the PhD thesis of
Mor-Absa Loum: <https://theses.fr/2018SACLS299>, available here
<https://theses.hal.science/tel-01877796/document>.
Author: Benjamin Auder [aut, cre],
Mor-Absa Loum [aut]
Maintainer: Benjamin Auder <benjamin.auder@universite-paris-saclay.fr>
Diff between morpheus versions 1.0-5 dated 2026-05-21 and 1.0-6 dated 2026-10-19
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- NAMESPACE | 32 ++++++++++++++++++-------------- R/optimParams.R | 36 +++++++++++++++++++----------------- R/plot.R | 9 +++++---- build/partial.rdb |binary 6 files changed, 54 insertions(+), 47 deletions(-)
Title: Unified Access to Canadian Hydrometric Data
Description: Provides a unified interface for accessing diverse
web-published hydrometric data sources across Canada,
presenting users with consistent tabular output regardless
of the underlying data source.
Author: Sam Albers [aut, cre],
Emily Haughton [ctb] ,
Tula Foundation [fnd, cph],
Canada Water Agency [fnd]
Maintainer: Sam Albers <sam.albers@hakai.org>
Diff between hydrocan versions 0.0.1 dated 2026-06-16 and 0.0.2 dated 2026-10-19
DESCRIPTION | 17 ++++++--- MD5 | 14 ++++---- NEWS.md | 16 +++++++++ R/bc_aquarius.R |only R/hydrocan-package.R | 8 ++++ R/sysdata.rda |binary README.md | 65 ++++++++++++++++++++++---------------- man/hydrocan-package.Rd | 1 tests/testthat/test-bc-aquarius.R |only 9 files changed, 82 insertions(+), 39 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2023, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Tim Gyger [aut],
Pascal Kuendig [aut],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the incl [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 1.7.4 dated 2026-08-23 and 1.8.0 dated 2026-10-19
gpboost-1.7.4/gpboost/tests/testthat/_snaps |only gpboost-1.8.0/gpboost/DESCRIPTION | 14 gpboost-1.8.0/gpboost/MD5 | 451 gpboost-1.8.0/gpboost/NAMESPACE | 10 gpboost-1.8.0/gpboost/R/GPModel.R | 879 gpboost-1.8.0/gpboost/R/gpb.Booster.R | 74 gpboost-1.8.0/gpboost/R/gpb.Dataset.R | 3 gpboost-1.8.0/gpboost/R/gpb.cv.R | 18 gpboost-1.8.0/gpboost/R/gpb.tune.num.threads.R |only gpboost-1.8.0/gpboost/R/gpboost.R | 6 gpboost-1.8.0/gpboost/R/utils.R | 184 gpboost-1.8.0/gpboost/configure.ac | 2 gpboost-1.8.0/gpboost/demo/generalized_linear_Gaussian_process_mixed_effects_models.R | 4 gpboost-1.8.0/gpboost/man/GPModel.Rd | 325 gpboost-1.8.0/gpboost/man/GPModel_shared_params.Rd | 430 gpboost-1.8.0/gpboost/man/fit.GPModel.Rd | 69 gpboost-1.8.0/gpboost/man/fit.Rd | 69 gpboost-1.8.0/gpboost/man/fitGPModel.Rd | 405 gpboost-1.8.0/gpboost/man/get_aux_pars.GPModel.Rd | 5 gpboost-1.8.0/gpboost/man/get_aux_pars.Rd | 5 gpboost-1.8.0/gpboost/man/get_coef.GPModel.Rd | 5 gpboost-1.8.0/gpboost/man/get_coef.Rd | 5 gpboost-1.8.0/gpboost/man/get_cov_pars.GPModel.Rd | 5 gpboost-1.8.0/gpboost/man/get_cov_pars.Rd | 5 gpboost-1.8.0/gpboost/man/gpb.cv.Rd | 6 gpboost-1.8.0/gpboost/man/gpb.get.default.num.threads.Rd |only gpboost-1.8.0/gpboost/man/gpb.get.num.threads.Rd |only gpboost-1.8.0/gpboost/man/gpb.set.default.num.threads.Rd |only gpboost-1.8.0/gpboost/man/gpb.set.num.threads.Rd |only gpboost-1.8.0/gpboost/man/gpb.train.Rd | 6 gpboost-1.8.0/gpboost/man/gpb.tune.num.threads.Rd |only gpboost-1.8.0/gpboost/man/gpb_shared_params.Rd | 6 gpboost-1.8.0/gpboost/man/gpboost.Rd | 6 gpboost-1.8.0/gpboost/man/set_optim_params.GPModel.Rd | 69 gpboost-1.8.0/gpboost/man/set_optim_params.Rd | 69 gpboost-1.8.0/gpboost/man/set_prediction_data.GPModel.Rd | 29 gpboost-1.8.0/gpboost/man/set_prediction_data.Rd | 29 gpboost-1.8.0/gpboost/man/summary.GPModel.Rd | 5 gpboost-1.8.0/gpboost/src/CG_utils.cpp | 1010 gpboost-1.8.0/gpboost/src/GP_utils.cpp | 120 gpboost-1.8.0/gpboost/src/Makevars.in | 121 gpboost-1.8.0/gpboost/src/Makevars.win | 121 gpboost-1.8.0/gpboost/src/Makevars.win.in | 121 gpboost-1.8.0/gpboost/src/SuiteSparse |only gpboost-1.8.0/gpboost/src/Vecchia_utils.cpp | 433 gpboost-1.8.0/gpboost/src/c_api.cpp | 136 gpboost-1.8.0/gpboost/src/cpu_topology.cpp |only gpboost-1.8.0/gpboost/src/gpboost_R.cpp | 147 gpboost-1.8.0/gpboost/src/gpboost_R.h | 117 gpboost-1.8.0/gpboost/src/include/Eigen/CholmodSupport |only gpboost-1.8.0/gpboost/src/include/Eigen/src/CholmodSupport |only gpboost-1.8.0/gpboost/src/include/GPBoost/CG_utils.h | 848 gpboost-1.8.0/gpboost/src/include/GPBoost/DF_utils.h | 6 gpboost-1.8.0/gpboost/src/include/GPBoost/GP_utils.h | 38 gpboost-1.8.0/gpboost/src/include/GPBoost/Vecchia_utils.h | 103 gpboost-1.8.0/gpboost/src/include/GPBoost/cov_fcts.h | 294 gpboost-1.8.0/gpboost/src/include/GPBoost/egpd_utils.h | 112 gpboost-1.8.0/gpboost/src/include/GPBoost/likelihoods.h |14198 +--------- gpboost-1.8.0/gpboost/src/include/GPBoost/likelihoods_aux_pars.h |only gpboost-1.8.0/gpboost/src/include/GPBoost/likelihoods_laplace.h |only gpboost-1.8.0/gpboost/src/include/GPBoost/likelihoods_predict.h |only gpboost-1.8.0/gpboost/src/include/GPBoost/optim_utils.h | 217 gpboost-1.8.0/gpboost/src/include/GPBoost/re_comp.h | 115 gpboost-1.8.0/gpboost/src/include/GPBoost/re_model.h | 139 gpboost-1.8.0/gpboost/src/include/GPBoost/re_model_template.h | 4276 ++- gpboost-1.8.0/gpboost/src/include/GPBoost/sparse_matrix_utils.h | 328 gpboost-1.8.0/gpboost/src/include/GPBoost/tweedie_utils.h | 98 gpboost-1.8.0/gpboost/src/include/GPBoost/type_defs.h | 14 gpboost-1.8.0/gpboost/src/include/GPBoost/utils.h | 244 gpboost-1.8.0/gpboost/src/include/LBFGS.h | 65 gpboost-1.8.0/gpboost/src/include/LBFGSpp/LineSearchBacktracking.h | 22 gpboost-1.8.0/gpboost/src/include/LBFGSpp/LineSearchNocedalWright.h | 77 gpboost-1.8.0/gpboost/src/include/LightGBM/c_api.h | 131 gpboost-1.8.0/gpboost/src/include/LightGBM/config.h | 2 gpboost-1.8.0/gpboost/src/include/LightGBM/utils/log.h | 16 gpboost-1.8.0/gpboost/src/include/LightGBM/utils/openmp_wrapper.h | 8 gpboost-1.8.0/gpboost/src/include/misc/optim_structs.hpp | 16 gpboost-1.8.0/gpboost/src/include/unconstrained/gd.hpp | 20 gpboost-1.8.0/gpboost/src/include/unconstrained/nm.hpp | 9 gpboost-1.8.0/gpboost/src/metric/regression_metric.hpp | 7 gpboost-1.8.0/gpboost/src/objective/objective_function.cpp | 1 gpboost-1.8.0/gpboost/src/re_model.cpp | 388 gpboost-1.8.0/gpboost/src/sparse_matrix_utils.cpp | 1115 gpboost-1.8.0/gpboost/src/treelearner/feature_histogram.hpp | 7 gpboost-1.8.0/gpboost/src/treelearner/voting_parallel_tree_learner.cpp | 8 gpboost-1.8.0/gpboost/tests/testthat.R | 10 gpboost-1.8.0/gpboost/tests/testthat/Rplots.pdf |binary gpboost-1.8.0/gpboost/tests/testthat/helper-num-threads.R |only gpboost-1.8.0/gpboost/tests/testthat/helper-tolerances.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_ar1_multifidelity.R | 989 gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_cg_convergence.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_combined_GP_random_effects.R | 572 gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_convergence_warnings.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_egpd.R | 178 gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_gaussian_process.R | 2915 -- gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_gaussian_process_cover_tree.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_gaussian_process_cuda.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_gaussian_process_fitc.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_gaussian_process_full_scale_tapering.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_gaussian_process_full_scale_vecchia.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_gaussian_process_prior_sampling.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_gaussian_process_space_time_ard.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_gaussian_process_state.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_gaussian_process_tapering.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_gaussian_process_vecchia.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_grouped_random_effects.R | 575 gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data.R | 5986 ---- gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_asymmetric_laplace.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_count.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_covariance.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_families.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_fitc.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_full_scale_vecchia.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_large_data.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_space_time_ard.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_standard_errors.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_tapering.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_varying_shape.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_vecchia.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data_zero_inflated.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_tweedie.R | 11 gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_tweedie_joint_varying_dispersion.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_weights.R |only gpboost-1.8.0/gpboost/tests/testthat/test_GPModel_zero_inflated_hurdle.R | 1338 gpboost-1.8.0/gpboost/tests/testthat/test_Grabit_mean-scale_regression.R | 5 gpboost-1.8.0/gpboost/tests/testthat/test_gpb.Booster.R | 30 gpboost-1.8.0/gpboost/tests/testthat/test_num_parallel_threads.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm.R | 1028 gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_fitc.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_full_scale_tapering.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_gaussian_process.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_large_data.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_nesterov.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data.R | 1455 - gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data_combined.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data_duplicate_locations.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data_families.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data_gaussian_process.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data_gaussian_process_variants.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data_large_data.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data_reuse_learning_rates.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data_save_load.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data_tuning.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data_vecchia.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_reuse_learning_rates.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_save_load.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_vecchia.R |only gpboost-1.8.0/gpboost/tests/testthat/test_z_GPBoost_algorithm_weights.R |only 148 files changed, 17416 insertions(+), 26122 deletions(-)
Title: Bayesian Dynamic Borrowing with Flexible Baseline Hazard
Function
Description: Allows Bayesian borrowing from a historical dataset for time-to-
event data. A flexible baseline hazard function is achieved via a piecewise
exponential likelihood with time varying split points and smoothing prior on the
historic baseline hazards. The method is described in Scott and Lewin (2026)
<doi:10.1093/biostatistics/kxag006>, and a paper focused on the software is
in Scott, Axillus, Lewin and Izmirlian (2026) <doi:10.48550/arXiv.2408.04327>.
Author: Darren Scott [aut],
Sophia Axillus [aut],
Grant Izmirlian [aut, cre]
Maintainer: Grant Izmirlian <grant.izmirlian@astrazeneca.com>
Diff between BayesFBHborrow versions 2.0.19 dated 2026-10-19 and 2.0.20 dated 2026-10-19
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- R/BayesFBHborrow.R | 4 +--- inst/doc/Using-BayesFBHborrow.pdf |binary vignettes/Using-BayesFBHborrow.bib | 2 +- vignettes/figures/fig-ggcs_KM_do.pdf |binary vignettes/figures/fig-p_gbcs_cndl_TrtEff_plot.pdf |binary vignettes/figures/fig-p_gbcs_cndl_haz_plot.pdf |binary vignettes/figures/fig-plot_cndl_haz_hst.pdf |binary vignettes/figures/fig-plot_cndl_haz_nb_wb.pdf |binary vignettes/figures/fig-trace.pdf |binary 11 files changed, 15 insertions(+), 17 deletions(-)
More information about BayesFBHborrow at CRAN
Permanent link