Sun, 23 Apr 2017

New package welchADF with initial version 0.1
Package: welchADF
Title: Welch-James Statistic for Robust Hypothesis Testing under Heterocedasticity and Non-Normality
Description: Implementation of Johansen's general formulation of Welch-James's statistic with Approximate Degrees of Freedom, which makes it suitable for testing any linear hypothesis concerning cell means in univariate and multivariate mixed model designs when the data pose non-normality and non-homogeneous variance. Some improvements, namely trimmed means and Winsorized variances, and bootstrapping for calculating an empirical critical value, have been added to the classical formulation. The code departs from a previous SAS implementation by L.M. Lix and H.J. Keselman, available at <http://homepage.usask.ca/~lml321/Program.pdf> and published in Keselman, H.J., Wilcox, R.R., and Lix, L.M. (2003) <DOI:10.1111/1469-8986.00060>.
Version: 0.1
Date: 2017-04-23
Author: Pablo J. Villacorta <pjvi@decsai.ugr.es>
Maintainer: Pablo J. Villacorta <pjvi@decsai.ugr.es>
License: LGPL (>= 3)
URL: <http://decsai.ugr.es/~pjvi/r-packages.html>
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-23 16:37:45 UTC; AsusPC
Repository: CRAN
Date/Publication: 2017-04-23 16:50:32 UTC

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New package sidrar with initial version 0.1.1
Package: sidrar
Type: Package
Title: An Interface to IBGE's SIDRA API
Version: 0.1.1
Authors@R: person("Renato", "Prado Siqueira", email = "rpradosiqueira@gmail.com", role = c("aut", "cre"))
Description: Allows the user to connect with IBGE's (Instituto Brasileiro de Geografia e Estatistica, see <http://www.ibge.gov.br/> for more information) SIDRA API in a flexible way. SIDRA is the acronym to "Sistema IBGE de Recuperacao Automatica" and is the system where IBGE turns available aggregate data from their researches.
Depends: R (>= 3.2.0)
License: GPL-3
Encoding: UTF-8
URL: http://github.com/rpradosiqueira/sidrar
BugReports: http://github.com/rpradosiqueira/sidrar/issues
Imports: dplyr, magrittr, RCurl, rjson, rvest, stringr, xml2
RoxygenNote: 6.0.1
Suggests: knitr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-04-23 15:25:48 UTC; Renato
Author: Renato Prado Siqueira [aut, cre]
Maintainer: Renato Prado Siqueira <rpradosiqueira@gmail.com>
Repository: CRAN
Date/Publication: 2017-04-23 16:43:01 UTC

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Package imputeTS updated to version 2.2 with previous version 2.1 dated 2017-04-18

Title: Time Series Missing Value Imputation
Description: Imputation (replacement) of missing values in univariate time series.
Author: Steffen Moritz
Maintainer: Steffen Moritz <steffen.moritz10@gmail.com>

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Package autothresholdr updated to version 0.4.0 with previous version 0.2.0 dated 2017-02-24

Title: An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Description: Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users. See <http://imagej.net/Auto_Threshold> and Landini et al. (2017) <DOI:10.1111/jmi.12474>.
Author: Rory Nolan [aut, cre, trl], Luis Alvarez [ctb], Sergi Padilla-Parra [ctb, ths], Gabriel Landini [ctb, cph]
Maintainer: Rory Nolan <rorynoolan@gmail.com>

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Package idem updated to version 2.0 with previous version 1.0 dated 2016-07-05

Title: Inference in Randomized Controlled Trials with Death and Missingness
Description: In randomized studies involving severely ill patients, functional outcomes are often unobserved due to missed clinic visits, premature withdrawal or death. It is well known that if these unobserved functional outcomes are not handled properly, biased treatment comparisons can be produced. In this package, we implement a procedure for comparing treatments that is based on the composite endpoint of both the functional outcome and survival. The procedure was proposed in Wang et al. (2016) <doi:10.1111/biom.12594>. It considers missing data imputation with a sensitivity analysis strategy to handle the unobserved functional outcomes not due to death.
Author: Chenguang Wang [aut, cre], Andrew Leroux [aut, cre], Elizabeth Colantuoni [aut], Daniel O Scharfstein [aut], Trustees of Columbia University [cph] (tools/make_cpp.R, R/stanmodels.R)
Maintainer: Chenguang Wang <cwang68@jhmi.edu>

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Package unpivotr updated to version 0.1.1 with previous version 0.1.0 dated 2017-01-31

Title: Unpivot Complex and Irregular Data Layouts
Description: Tools for converting data from complex or irregular layouts to a columnar structure. For example, tables with multilevel column or row headers, or spreadsheets. Header and data cells are selected by their contents and position, as well as formatting and comments where available, and are associated with one other by their proximity in given directions.
Author: Duncan Garmonsway [aut, cre]
Maintainer: Duncan Garmonsway <nacnudus@gmail.com>

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Package startupmsg updated to version 0.9.4 with previous version 0.9.3 dated 2016-04-23

Title: Utilities for Start-Up Messages
Description: Provides utilities to create or suppress start-up messages.
Author: Peter Ruckdeschel [cre, cph, aut]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>

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Package ROptEst updated to version 1.0.1 with previous version 1.0 dated 2016-09-05

Title: Optimally Robust Estimation
Description: Optimally robust estimation in general smoothly parameterized models using S4 classes and methods.
Author: Matthias Kohl [cre, cph], Mykhailo Pupashenko [ctb] (contributed wrapper functions for diagnostic plots), Gerald Kroisandt [ctb] (contributed testing routines), Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>

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Package RobAStBase updated to version 1.0.1 with previous version 1.0 dated 2016-09-05

Title: Robust Asymptotic Statistics
Description: Base S4-classes and functions for robust asymptotic statistics.
Author: Matthias Kohl [cre, cph, aut], Peter Ruckdeschel [aut, cph], Mykhailo Pupashenko [ctb] (contributed wrapper functions for diagnostic plots), Gerald Kroisandt [ctb] (contributed testing routines), R Core Team [ctb, cph] (for source file 'format.perc')
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>

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Package RandVar updated to version 1.0.1 with previous version 1.0 dated 2016-04-25

Title: Implementation of Random Variables
Description: Implements random variables by means of S4 classes and methods.
Author: Matthias Kohl [cre, cph, aut], Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>

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Package npROCRegression updated to version 1.0-5 with previous version 1.0-4 dated 2016-11-15

Title: Kernel-Based Nonparametric ROC Regression Modelling
Description: Implements several nonparametric regression approaches for the inclusion of covariate information on the receiver operating characteristic (ROC) framework.
Author: Maria Xose Rodriguez-Alvarez [aut, cre], Javier Roca-Pardinas [aut]
Maintainer: Maria Xose Rodriguez-Alvarez <mxrodriguez@bcamath.org>

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Package MonteCarlo updated to version 1.0.2 with previous version 1.0.1 dated 2017-04-07

Title: Automatic Parallelized Monte Carlo Simulations
Description: Simplifies Monte Carlo simulation studies by automatically setting up loops to run over parameter grids and parallelising the Monte Carlo repetitions. It also generates LaTeX tables.
Author: Christian Hendrik Leschinski
Maintainer: Christian Hendrik Leschinski <leschinski@statistik.uni-hannover.de>

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Package GGIR updated to version 1.5-1 with previous version 1.4 dated 2017-01-22

Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors. The package has been developed and tested for binary data from GENEActiv and GENEA devices, .csv-export data from Actigraph devices, and .wav-format data from Axivity. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre], Zhou Fang [ctb], Jing Hua Zhao [ctb], Joe Heywood [ctb], Evgeny Mirkes [ctb], Severine Sabia [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>

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Package distrEx updated to version 2.6.1 with previous version 2.6 dated 2016-04-24

Title: Extensions of Package 'distr'
Description: Extends package 'distr' by functionals, distances, and conditional distributions.
Author: Matthias Kohl [cre, cph, aut], Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>

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Package plspm updated to version 0.4.9 with previous version 0.4.8 dated 2017-04-21

Title: Tools for Partial Least Squares Path Modeling (PLS-PM)
Description: Partial Least Squares Path Modeling (PLS-PM) analysis for both metric and non-metric data, as well as REBUS analysis.
Author: Gaston Sanchez [aut, cre], Laura Trinchera [aut], Giorgio Russolillo [aut]
Maintainer: ORPHANED

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Package beanz updated to version 2.0 with previous version 1.7.1 dated 2016-11-14

Title: Bayesian Analysis of Heterogeneous Treatment Effect
Description: It is vital to assess the heterogeneity of treatment effects (HTE) when making health care decisions for an individual patient or a group of patients. Nevertheless, it remains challenging to evaluate HTE based on information collected from clinical studies that are often designed and conducted to evaluate the efficacy of a treatment for the overall population. The Bayesian framework offers a principled and flexible approach to estimate and compare treatment effects across subgroups of patients defined by their characteristics. This package allows users to explore a wide range of Bayesian HTE analysis models, and produce posterior inferences about HTE.
Author: Chenguang Wang [aut, cre], Ravi Varadhan [aut], Trustees of Columbia University [cph] (tools/make_cpp.R, R/stanmodels.R)
Maintainer: Chenguang Wang <cwang68@jhmi.edu>

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Permanent link

New package nat.templatebrains with initial version 0.8.2
Package: nat.templatebrains
Type: Package
Title: NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains
Version: 0.8.2
Authors@R: c(person("Gregory", "Jefferis", , "jefferis@gmail.com", role = c("aut", "cre")), person("James", "Manton", , "ajd.manton@googlemail.com", role = c("aut")))
Description: Extends package 'nat' (NeuroAnatomy Toolbox) by providing objects and functions for handling template brains.
License: GPL-3
Depends: R (>= 2.10), rgl, nat (>= 1.8.6)
Imports: igraph, digest, rappdirs, memoise
Suggests: testthat (>= 0.10), git2r
URL: https://github.com/jefferislab/nat.templatebrains
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-22 17:52:37 UTC; jdm
Author: Gregory Jefferis [aut, cre], James Manton [aut]
Maintainer: Gregory Jefferis <jefferis@gmail.com>
Repository: CRAN
Date/Publication: 2017-04-22 22:24:52 UTC

More information about nat.templatebrains at CRAN
Permanent link

Package climextRemes updated to version 0.1.3 with previous version 0.1.2 dated 2016-08-10

Title: Tools for Analyzing Climate Extremes
Description: Functions for fitting GEV and POT (via point process fitting) models for extremes in climate data, providing return values, return probabilities, and return periods for stationary and nonstationary models. Also provides differences in return values and differences in log return probabilities for contrasts of covariate values. Functions for estimating risk ratios for event attribution analyses, including uncertainty. Under the hood, many of the functions use functions from extRemes, including for fitting the statistical models.
Author: Christopher Paciorek [aut, cre]
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>

Diff between climextRemes versions 0.1.2 dated 2016-08-10 and 0.1.3 dated 2017-04-23

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Permanent link

Sat, 22 Apr 2017

Package SweaveListingUtils updated to version 0.7.7 with previous version 0.7.5 dated 2016-04-25

Title: Utilities for Sweave Together with TeX 'listings' Package
Description: Provides utilities for defining R / Rd as "language" for TeX-package "listings" and for including R / Rd source file (snippets) copied from R-forge in its most recent version (or another URL) thereby avoiding inconsistencies between vignette and documented source code.
Author: Peter Ruckdeschel [cre, cph, aut]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>

Diff between SweaveListingUtils versions 0.7.5 dated 2016-04-25 and 0.7.7 dated 2017-04-22

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Permanent link

Package scatterplot3d updated to version 0.3-40 with previous version 0.3-39 dated 2017-03-30

Title: 3D Scatter Plot
Description: Plots a three dimensional (3D) point cloud.
Author: Uwe Ligges <ligges@statistik.tu-dortmund.de>, Martin Maechler, Sarah Schnackenberg
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>

Diff between scatterplot3d versions 0.3-39 dated 2017-03-30 and 0.3-40 dated 2017-04-22

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Package readBrukerFlexData updated to version 1.8.5 with previous version 1.8.3 dated 2016-11-30

Title: Reads Mass Spectrometry Data in Bruker *flex Format
Description: Reads data files acquired by Bruker Daltonics' matrix-assisted laser desorption/ionization-time-of-flight mass spectrometer of the *flex series.
Author: Sebastian Gibb [aut, cre]
Maintainer: Sebastian Gibb <mail@sebastiangibb.de>

Diff between readBrukerFlexData versions 1.8.3 dated 2016-11-30 and 1.8.5 dated 2017-04-22

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Package rdlocrand updated to version 0.2 with previous version 0.1 dated 2017-04-07

Title: Local Randomization Methods for RD Designs
Description: The regression discontinuity (RD) design is a popular quasi-experimental design for causal inference and policy evaluation. Under the local randomization approach, RD designs can be interpreted as randomized experiments inside a window around the cutoff. This package provides tools to perform randomization inference for RD designs under local randomization: rdrandinf() to perform hypothesis testing using randomization inference, rdwinselect() to select a window around the cutoff in which randomization is likely to hold, rdsensitivity() to assess the sensitivity of the results to different window lengths and null hypotheses and rdrbounds() to construct Rosenbaum bounds for sensitivity to unobserved confounders.
Author: Matias D. Cattaneo, Rocio Titiunik, Gonzalo Vazquez-Bare
Maintainer: Gonzalo Vazquez-Bare <gvazquez@umich.edu>

Diff between rdlocrand versions 0.1 dated 2017-04-07 and 0.2 dated 2017-04-22

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Package DMMF updated to version 0.3.2.0 with previous version 0.2.8.0 dated 2017-03-12

Title: Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model
Description: Implements the daily based Morgan-Morgan-Finney (DMMF) soil erosion model (Choi et al., 2017 <doi:10.3390/w9040278>) for estimating surface runoff and sediment budgets from a field or a catchment on a daily basis.
Author: Kwanghun Choi [aut, cre], Sebastian Arnhold [dtc, ctb], Bjoern Reineking [ths, ctb]
Maintainer: Kwanghun Choi <kwanghun.choi@yahoo.com>

Diff between DMMF versions 0.2.8.0 dated 2017-03-12 and 0.3.2.0 dated 2017-04-22

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Package BeviMed updated to version 5.0 with previous version 4.0 dated 2017-03-01

Title: Bayesian Evaluation of Variant Involvement in Mendelian Disease
Description: A fast integrative genetic association test for rare diseases based on a model for disease status given allele counts at rare variant sites. Probability of association, mode of inheritance and probability of pathogenicity for individual variants are all inferred in a Bayesian framework.
Author: Daniel Greene, Sylvia Richardson and Ernest Turro
Maintainer: Daniel Greene <dg333@cam.ac.uk>

Diff between BeviMed versions 4.0 dated 2017-03-01 and 5.0 dated 2017-04-22

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Permanent link

New package antiword with initial version 1.0
Package: antiword
Type: Package
Title: Extract Text from Microsoft Word Documents
Version: 1.0
Authors@R: c( person("Jeroen", "Ooms", ,"jeroen@berkeley.edu", role = c("aut", "cre")), person("Adri van Os", role = "cph", comment = "Author 'antiword' utility") )
Description: Wraps the 'AntiWord' utility to extract text from Microsoft Word documents. The utility only supports the old 'doc' format, not the new xml based 'docx' format.
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: sys
RoxygenNote: 6.0.1
URL: https://github.com/ropensci/antiword#readme (devel) http://www.winfield.demon.nl (upstream)
BugReports: http://github.com/ropensci/antiword/issues
NeedsCompilation: yes
Packaged: 2017-04-22 15:56:25 UTC; jeroen
Author: Jeroen Ooms [aut, cre], Adri van Os [cph] (Author 'antiword' utility)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Repository: CRAN
Date/Publication: 2017-04-22 16:26:34 UTC

More information about antiword at CRAN
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Package support.BWS updated to version 0.1-4 with previous version 0.1-3 dated 2015-04-27

Title: Basic Functions for Supporting an Implementation of Best-Worst Scaling
Description: Provides three basic functions that support an implementation of object case (Case 1) best-worst scaling: one for converting a two-level orthogonal main-effect design/balanced incomplete block design into questions; one for creating a data set suitable for analysis; and one for calculating count-based scores.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>

Diff between support.BWS versions 0.1-3 dated 2015-04-27 and 0.1-4 dated 2017-04-22

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Package RHMS updated to version 1.1 with previous version 1.0 dated 2017-04-21

Title: Hydrologic Modelling System for R Users
Description: Hydrologic modelling system is an object oriented tool which enables R users to simulate and analyze hydrologic events. The package proposes functions and methods for construction, simulation, visualization, and calibration of hydrologic systems.
Author: Rezgar Arabzadeh ; Shahab Araghinejad
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>

Diff between RHMS versions 1.0 dated 2017-04-21 and 1.1 dated 2017-04-22

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Package distr updated to version 2.6.2 with previous version 2.6 dated 2016-04-23

Title: Object Oriented Implementation of Distributions
Description: S4-classes and methods for distributions.
Author: Florian Camphausen [ctb] (contributed as student in the initial phase --2005), Matthias Kohl [aut, cph], Peter Ruckdeschel [cre, cph], Thomas Stabla [ctb] (contributed as student in the initial phase --2005), R Core Team [ctb, cph] (for source file ks.c/ routines 'pKS2' and 'pKolmogorov2x')
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>

Diff between distr versions 2.6 dated 2016-04-23 and 2.6.2 dated 2017-04-22

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Package deldir updated to version 0.1-14 with previous version 0.1-12 dated 2016-03-06

Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Description: Calculates the Delaunay triangulation and the Dirichlet or Voronoi tessellation (with respect to the entire plane) of a planar point set. Plots triangulations and tessellations in various ways. Clips tessellations to sub-windows. Calculates perimeters of tessellations. Summarises information about the tiles of the tessellation.
Author: Rolf Turner
Maintainer: Rolf Turner <r.turner@auckland.ac.nz>

Diff between deldir versions 0.1-12 dated 2016-03-06 and 0.1-14 dated 2017-04-22

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Package treatSens updated to version 2.1.2 with previous version 2.1.1 dated 2017-04-20

Title: Sensitivity Analysis for Causal Inference
Description: Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment.
Author: Nicole Bohme Carnegie [aut, cre], Masataka Harada [aut], Vincent Dorie [aut], Jennifer Hill [ctb]
Maintainer: Nicole Bohme Carnegie <carnegin@uwm.edu>

Diff between treatSens versions 2.1.1 dated 2017-04-20 and 2.1.2 dated 2017-04-22

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 treatSens-2.1.2/treatSens/tests/testthat.R                              |   14 
 treatSens-2.1.2/treatSens/tests/testthat/test-01-glmFit.R               |   46 
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 treatSens-2.1.2/treatSens/tests/testthat/test-03-continuous.R           |  240 
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 53 files changed, 7856 insertions(+), 7867 deletions(-)

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New package startR with initial version 0.0.1
Package: startR
Title: Automatically Retrieve Multidimensional Distributed Data Sets
Version: 0.0.1
Authors@R: c( person("BSC-CNS", role = c("aut", "cph")), person("Nicolau", "Manubens", , "nicolau.manubens@bsc.es", role = c("aut", "cre")))
Description: Tool to automatically fetch, transform and arrange subsets of multidimensional data sets (collections of files) stored in local and/or remote file systems or servers, using multicore capabilities where possible. The tool provides an interface to perceive a collection of data sets as a single large multidimensional data array, and enables the user to request for automatic retrieval, processing and arrangement of subsets of the large array. Wrapper functions to add support for custom file formats can be plugged in/out, making the tool suitable for any research field where large multidimensional data sets are involved.
Depends: R (>= 2.14.1)
Imports: abind, bigmemory, future, parallel
Suggests: easyNCDF, s2dverification
License: LGPL-3
URL: https://earth.bsc.es/gitlab/es/startR/
BugReports: https://earth.bsc.es/gitlab/es/startR/issues
LazyData: true
NeedsCompilation: no
Packaged: 2017-04-22 02:58:45 UTC; nmanubens
Author: BSC-CNS [aut, cph], Nicolau Manubens [aut, cre]
Maintainer: Nicolau Manubens <nicolau.manubens@bsc.es>
Repository: CRAN
Date/Publication: 2017-04-22 04:26:58 UTC

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Package HardyWeinberg updated to version 1.5.7 with previous version 1.5.6 dated 2016-03-29

Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Description: Contains tools for exploring Hardy-Weinberg equilibrium for diallelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of diallelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots.
Author: Jan Graffelman <jan.graffelman@upc.edu>
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>

Diff between HardyWeinberg versions 1.5.6 dated 2016-03-29 and 1.5.7 dated 2017-04-22

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Fri, 21 Apr 2017

New package wgeesel with initial version 1.0
Package: wgeesel
Type: Package
Title: Weighted Generalized Estimating Equations and Model Selection
Version: 1.0
Date: 2017-04-14
Encoding: UTF-8
Author: Cong Xu <congxu17@gmail.com>, Zheng Li <zheng.li@outlook.com>, Ming Wang <mwang@phs.psu.edu>
Maintainer: Zheng Li <zheng.li@outlook.com>
Description: Weighted generalized estimating equations (WGEE) is an extension of generalized linear models to longitudinal clustered data by incorporating the correlation within-cluster when data is missing at random (MAR). The parameters in mean, scale correlation structures are estimated based on quasi-likelihood. Multiple model selection criterion are provided for selection of mean model and working correlation structure based on WGEE/GEE.
License: GPL-2
Depends: R (>= 3.0.0)
Imports: MASS, stats, geepack, bindata, PoisNor
NeedsCompilation: no
Packaged: 2017-04-21 19:49:24 UTC; Joe
Repository: CRAN
Date/Publication: 2017-04-21 23:22:25 UTC

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New package SADISA with initial version 1.0
Package: SADISA
Type: Package
Title: Species Abundance Distributions with Independent-Species Assumption
Version: 1.0
Author: Rampal S. Etienne & Bart Haegeman
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
Description: Computes the probability of a set of species abundances of a single or multiple samples of individuals under a mainland-island model. One must specify the mainland (metacommunity) model and the island (local) community model. It assumes that species fluctuate independently. See Haegeman, B. & R.S. Etienne (2017). A general sampling formula for community structure data. Methods in Ecology & Evolution. In press.
License: GPL-3
LazyData: FALSE
RoxygenNote: 5.0.1
Imports: subplex, pracma, DDD
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-04-21 21:22:10 UTC; rampa
Repository: CRAN
Date/Publication: 2017-04-21 23:08:31 UTC

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Package phylobase updated to version 0.8.4 with previous version 0.8.2 dated 2016-01-22

Title: Base Package for Phylogenetic Structures and Comparative Data
Description: Provides a base S4 class for comparative methods, incorporating one or more trees and trait data.
Author: R Hackathon et al. (alphabetically: Ben Bolker, Marguerite Butler, Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark Holder, Thibaut Jombart, Steve Kembel, Francois Michonneau, David Orme, Brian O'Meara, Emmanuel Paradis, Jim Regetz, Derrick Zwickl)
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>

Diff between phylobase versions 0.8.2 dated 2016-01-22 and 0.8.4 dated 2017-04-21

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Package metaplot updated to version 0.1.2 with previous version 0.1.1 dated 2017-04-17

Title: Formalized Plots for Self-Describing Data
Description: Creates fully-annotated plots with minimum guidance. Since the data is self-describing, less effort is needed for creating the plot. Generally expects data of class folded (see fold package). If attributes GUIDE and LABEL are present, they will be used to create formal axis labels. Several aesthetics are supported, such as reference lines, unity lines, smooths, and log transformations.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>

Diff between metaplot versions 0.1.1 dated 2017-04-17 and 0.1.2 dated 2017-04-21

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 3 files changed, 6 insertions(+), 6 deletions(-)

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Package EpiILM updated to version 1.2 with previous version 1.1 dated 2017-04-17

Title: Spatial and Network Based Individual Level Models for Epidemics
Description: Provides tools for simulating from discrete-time individual level models for infectious disease data analysis. This epidemic model class contains spatial and contact-network based models with two disease types: Susceptible-Infectious (SI) and Susceptible-Infectious-Removed (SIR).
Author: Vineetha Warriyar. K. V. and Rob Deardon
Maintainer: Vineetha Warriyar. K. V. <vineethawarriyar.kod@ucalgary.ca>

Diff between EpiILM versions 1.1 dated 2017-04-17 and 1.2 dated 2017-04-21

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 6 files changed, 18 insertions(+), 19 deletions(-)

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Package dtplyr updated to version 0.0.2 with previous version 0.0.1 dated 2016-06-27

Title: Data Table Back-End for 'dplyr'
Description: This implements the data table back-end for 'dplyr' so that you can seamlessly use data table and 'dplyr' together.
Author: Lionel Henry [cre], Hadley Wickham [aut], RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>

Diff between dtplyr versions 0.0.1 dated 2016-06-27 and 0.0.2 dated 2017-04-21

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New package chemmodlab with initial version 1.0.0
Package: chemmodlab
Type: Package
Title: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models
Version: 1.0.0
Date: 2017-04-21
Authors@R: c( person("Jacqueline", "Hughes-Oliver", email = "hughesol@ncsu.edu", role = c("aut")), person("Jeremy", "Ash", email = "jrash@ncsu.edu", role = c("aut", "cre")), person("Atina", "Brooks", email = "atina.brooks@alumni.ncsu.edu", role = c("aut")) )
Description: Contains a set of methods for fitting models and methods for validating the resulting models. The statistical methodologies comprise a comprehensive collection of approaches whose validity and utility have been accepted by experts in the Cheminformatics field. As promising new methodologies emerge from the statistical and data-mining communities, they will be incorporated into the laboratory. These methods are aimed at discovering quantitative structure-activity relationships (QSARs). However, the user can directly input their own choices of descriptors and responses, so the capability for comparing models is effectively unlimited.
Depends: R (>= 3.1.1)
License: GPL-3
LazyData: TRUE
URL: https://github.com/jrash/ChemModLab
BugReports: https://github.com/jrash/ChemModLab/issues
Imports: class (>= 7.3.14), e1071 (>= 1.6.7), elasticnet (>= 1.1), foreach(>= 1.4.3), lars(>= 1.2), MASS(>= 7.3.45), nnet(>= 7.3.12), pROC(>= 1.8), randomForest(>= 4.6.12), rpart(>= 4.1.10), tree (>= 1.0.37), pls (>= 2.5.0), caret (>= 6.0-71), stats, graphics, grDevices, utils, datasets, methods
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-04-21 20:23:07 UTC; Vestige
Author: Jacqueline Hughes-Oliver [aut], Jeremy Ash [aut, cre], Atina Brooks [aut]
Maintainer: Jeremy Ash <jrash@ncsu.edu>
Suggests: knitr, rmarkdown
Repository: CRAN
Date/Publication: 2017-04-21 23:23:34 UTC

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Package waterData updated to version 1.0.7 with previous version 1.0.6 dated 2017-02-13

Title: Retrieval, Analysis, and Anomaly Calculation of Daily Hydrologic Time Series Data
Description: Imports U.S. Geological Survey (USGS) daily hydrologic data from USGS web services (see <https://waterservices.usgs.gov/> for more information), plots the data, addresses some common data problems, and calculates and plots anomalies.
Author: Karen R. Ryberg and Aldo V. Vecchia
Maintainer: Karen R. Ryberg <kryberg@usgs.gov>

Diff between waterData versions 1.0.6 dated 2017-02-13 and 1.0.7 dated 2017-04-21

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Package SGP updated to version 1.7-0.0 with previous version 1.6-0.0 dated 2017-01-01

Title: Student Growth Percentiles & Percentile Growth Trajectories
Description: Functions to calculate student growth percentiles and percentile growth projections/trajectories for students using large scale, longitudinal assessment data. Functions use quantile regression to estimate the conditional density associated with each student's achievement history. Percentile growth projections/trajectories are calculated using the coefficient matrices derived from the quantile regression analyses and specify what percentile growth is required for students to reach future achievement targets.
Author: Damian W. Betebenner [aut, cre], Adam R. Van Iwaarden [aut], Ben Domingue [aut], Yi Shang [aut], Jonathan Weeks [ctb], John Stewart [ctb], Jinnie Choi [ctb], Xin Wei [ctb], Hi Shin Shim [ctb], Xiaoyuan Tan [ctb] (Arizona Department of Education), Carrie Giovannini [ctb] (Arizona Department of Education), Sarah Polasky [ctb] (Arizona State University), Rebecca Gau [ctb] (Arizona Charter School Association), Jeffrey Dean [ctb] (University of Arkansas), William Bonk [ctb] (Colorado Department of Education), Marie Huchton [ctb] (Colorado Department of Education), Allison Timberlake [ctb] (Georgia Department of Education), Qi Qin [ctb] (Georgia Department of Education), Melissa Fincher [ctb] (Georgia Department of Education), Kiran Athota [ctb] (Georgia Department of Education), Travis Allen [ctb] (Georgia Department of Education), Glenn Hirata [ctb] (Hawaii Department of Education), Glenn Nochi [ctb] (Hawaii Department of Education), Joshua Lee [ctb] (Hawaii Department of Education), Ayaka Nukui [ctb] (Idaho Department of Education), Carissa Miller [ctb] (Idaho Department of Education), Matthew Raimondi [ctb] (Elgin Area School District U46 (Illinois)), Wes Bruce [ctb] (Indiana Department of Education), Robert Hochsegang [ctb] (Indiana Department of Education), Tony Moss [ctb] (Kansas State Department of Education), Xuewen Sheng [ctb] (Kansas State Department of Education), Kathy Flanagan [ctb] (Massachusetts Department of Elementary and Secondary Education), Robert Lee [ctb] (Massachusetts Department of Elementary and Secondary Education), Ji Zeng [ctb] (Michigan Department of Education), Steve Viger [ctb] (Michigan Department of Education), Joe DeCastra [ctb] (Mississippi Department of Education), Ken Thompson [ctb] (Mississippi Department of Education), Soo Yeon Cho [ctb] (Missouri Department of Education), Jeff Halsell [ctb] (Clark County School District, Nevada), Selcuk Ozdemir [ctb] (Washoe County School District, Nevada), Roger Silva [ctb] (Nevada Department of Education), Deb Wiswell [ctb] (New Hampshire Department of Education), Katya Levitan-Reiner [ctb] (New Haven Public Schools), Catherine McCaslin [ctb] (New Haven Public Schools), Joshua Marland [ctb] (New York Education Department), W Joshua Rew [ctb] (Oregon Department of Education), Jason Becker [ctb] (Rhode Island Department of Education), Jessica Bailey [ctb] (Rhode Island Department of Education), Ana Karantonis [ctb] (Rhode Island Department of Education), Deborah Jonas [ctb] (Virginia Department of Education), Juan D'Brot [ctb] (West Virginia Department of Education), Nate Hixson [ctb] (West Virginia Department of Education), Deb Came [ctb] (Washington Office of Superintendent of Public Instruction), Ashley Colburn [ctb] (Washington Office of Superintendent of Public Instruction), Nick Hassell [ctb] (Washington Office of Superintendent of Public Instruction), Krissy Johnson [ctb] (Washington Office of Superintendent of Public Instruction), Daniel Bush [ctb] (Wisconsin Department of Education), Justin Meyer [ctb] (Wisconsin Department of Education), Joseph Newton [ctb] (Wisconsin Department of Education), Nick Stroud [ctb] (Wisconsin Department of Education), John Paul [ctb] (Wyoming Department of Education), Michael Flicek [ctb] (Michael Flicek Projects LLC working with Wyoming Department of Education), Phyllis Clay [ctb] (Albuquerque Public Schools), Peter Kinyua [ctb] (Albuquerque Public Schools), Brendan Houng [ctb] (University of Melbourne, Australia, NAPLAN), Leslie Rosale [ctb] (Ministry of Education, Guatemala), Nathan Wall [ctb] (eMetric working with Nevada Department of Education and South Dakota Department of Education), Narek Sahakyan [ctb] (World Class Instruction and Design (WIDA))
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>

Diff between SGP versions 1.6-0.0 dated 2017-01-01 and 1.7-0.0 dated 2017-04-21

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Permanent link

Package crawl updated to version 2.1.1 with previous version 2.0.1 dated 2016-07-29

Title: Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data
Description: Fit continuous-time correlated random walk models with time indexed covariates to animal telemetry data. The model is fit using the Kalman-filter on a state space version of the continuous-time stochastic movement process.
Author: Devin S. Johnson
Maintainer: Devin S. Johnson <devin.johnson@noaa.gov>

Diff between crawl versions 2.0.1 dated 2016-07-29 and 2.1.1 dated 2017-04-21

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Permanent link

Package batchtools updated to version 0.9.3 with previous version 0.9.2 dated 2017-02-20

Title: Tools for Computation on Batch Systems
Description: As a successor of the packages 'BatchJobs' and 'BatchExperiments', this package provides a parallel implementation of the Map function for high performance computing systems managed by schedulers 'IBM Spectrum LSF' (<http://www-03.ibm.com/systems/spectrum-computing/products/lsf/>), 'OpenLava' (<http://www.openlava.org/>), 'Univa Grid Engine'/'Oracle Grid Engine' (<http://www.univa.com/>), 'Slurm' (<http://slurm.schedmd.com/>), 'TORQUE/PBS' (<http://www.adaptivecomputing.com/products/open-source/torque/>), or 'Docker Swarm' (<https://docs.docker.com/swarm/>). A multicore and socket mode allow the parallelization on a local machines, and multiple machines can be hooked up via SSH to create a makeshift cluster. Moreover, the package provides an abstraction mechanism to define large-scale computer experiments in a well-organized and reproducible way.
Author: Michel Lang [cre, aut], Bernd Bischl [aut], Dirk Surmann [ctb]
Maintainer: Michel Lang <michellang@gmail.com>

Diff between batchtools versions 0.9.2 dated 2017-02-20 and 0.9.3 dated 2017-04-21

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More information about batchtools at CRAN
Permanent link

New package statGraph with initial version 0.1.0
Package: statGraph
Type: Package
Title: Statistical Methods for Graphs
Author: Suzana S. Santos [aut], Andre Fujita [aut, cre]
Maintainer: Andre Fujita <fujita@ime.usp.br>
Depends: R (>= 2.10.0), stats, graphics
Imports: igraph, MASS
Description: Contains statistical methods to analyze graphs, such as graph parameter estimation, model selection based on the GIC (Graph Information Criterion), statistical tests to discriminate two or more populations of graphs (ANOGVA -Analysis of Graph Variability), correlation between graphs, and clustering of graphs.
License: GPL (>= 3)
Encoding: UTF-8
LazyLoad: yes
URL: https://www.ime.usp.br/~fujita/software.html
Authors@R: c(person(given="Suzana S.", family="Santos", email="suzana@ime.usp.br", role=c("aut")), person(given="Andre", family="Fujita", email="fujita@ime.usp.br", role=c("aut", "cre")))
Version: 0.1.0
Date: 2017-04-21
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-04-21 03:55:17 UTC; su
Repository: CRAN
Date/Publication: 2017-04-21 18:43:05 UTC

More information about statGraph at CRAN
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Package SIS updated to version 0.8-4 with previous version 0.8-3 dated 2016-10-12

Title: Sure Independence Screening
Description: Variable selection techniques are essential tools for model selection and estimation in high-dimensional statistical models. Through this publicly available package, we provide a unified environment to carry out variable selection using iterative sure independence screening (SIS) and all of its variants in generalized linear models and the Cox proportional hazards model.
Author: Jianqing Fan, Yang Feng, Diego Franco Saldana, Richard Samworth, Yichao Wu
Maintainer: Yang Feng <yang.feng@columbia.edu>

Diff between SIS versions 0.8-3 dated 2016-10-12 and 0.8-4 dated 2017-04-21

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Package sinaplot updated to version 1.1.0 with previous version 1.0.0 dated 2016-10-11

Title: An Enhanced Chart for Simple and Truthful Representation of Single Observations over Multiple Classes
Description: The sinaplot is a data visualization chart suitable for plotting any single variable in a multiclass data set. It is an enhanced jitter strip chart, where the width of the jitter is controlled by the density distribution of the data within each class.
Author: Nikos Sidiropoulos [aut, cre], Sina Hadi Sohi [aut], Nicolas Rapin [aut], Frederik Otzen Bagger [aut]
Maintainer: Nikos Sidiropoulos <nikos.sidiro@gmail.com>

Diff between sinaplot versions 1.0.0 dated 2016-10-11 and 1.1.0 dated 2017-04-21

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More information about sinaplot at CRAN
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Package RpeakChrom updated to version 1.1.0 with previous version 0.1.0 dated 2016-12-14

Title: Tools for Chromatographic Column Characterization and Modelling Chromatographic Peak
Description: The quantitative measurement and detection of molecules in HPLC should be carried out by an accurate description of chromatographic peaks. In this package non-linear fitting using a modified Gaussian model with a parabolic variance (PVMG) has been implemented to obtain the retention time and height at the peak maximum. This package also includes the traditional Van Deemter approach and two alternatives approaches to characterize chromatographic column.
Author: Manuel David Peris Diaz, Maria Isabel Alcoriza Balaguer
Maintainer: Manuel David Peris Diaz <madape@alumni.uv.es>

Diff between RpeakChrom versions 0.1.0 dated 2016-12-14 and 1.1.0 dated 2017-04-21

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Package PRROC updated to version 1.3 with previous version 1.1 dated 2015-02-25

Title: Precision-Recall and ROC Curves for Weighted and Unweighted Data
Description: Computes the areas under the precision-recall (PR) and ROC curve for weighted (e.g., soft-labeled) and unweighted data. In contrast to other implementations, the interpolation between points of the PR curve is done by a non-linear piecewise function. In addition to the areas under the curves, the curves themselves can also be computed and plotted by a specific S3-method. References: Davis and Goadrich (2006) <doi:10.1145/1143844.1143874>; Keilwagen et al. (2014) <doi:10.1371/journal.pone.0092209>; Grau et al. (2015) <doi:10.1093/bioinformatics/btv153>.
Author: Jan Grau and Jens Keilwagen
Maintainer: Jan Grau <grau@informatik.uni-halle.de>

Diff between PRROC versions 1.1 dated 2015-02-25 and 1.3 dated 2017-04-21

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Package microPop updated to version 1.2 with previous version 1.1 dated 2017-04-07

Title: Modelling Microbial Populations
Description: Modelling interacting microbial populations - example applications include human gut microbiota, rumen microbiota and phytoplankton. Solves a system of ordinary differential equations to simulate microbial growth and resource uptake over time.
Author: Helen Kettle [aut, cre]
Maintainer: Helen Kettle <Helen.Kettle@bioss.ac.uk>

Diff between microPop versions 1.1 dated 2017-04-07 and 1.2 dated 2017-04-21

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More information about microPop at CRAN
Permanent link

Package installr updated to version 0.19.0 with previous version 0.18.0 dated 2016-11-05

Title: Using R to Install Stuff (Such As: R, 'Rtools', 'RStudio', 'Git', and More!)
Description: R is great for installing software. Through the 'installr' package you can automate the updating of R (on Windows, using updateR()) and install new software. Software installation is initiated through a GUI (just run installr()), or through functions such as: install.Rtools(), install.pandoc(), install.git(), and many more. The updateR() command performs the following: finding the latest R version, downloading it, running the installer, deleting the installation file, copy and updating old packages to the new R installation.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com), Barry Rowlingson [ctb], Boris Hejblum [ctb], Dason [ctb], Felix Schonbrodt [ctb], G. Grothendieck [ctb], GERGELY DAROCZI [ctb], Heuristic Andrew [ctb], James [ctb] (http://stackoverflow.com/users/269476/james), Thomas Leeper [ctb] (http://thomasleeper.com/), VitoshKa [ctb], Yihui Xie [ctb] (http://yihui.name), Michael Friendly [ctb] (http://datavis.ca/), Kornelius Rohmeyer [ctb] (http://algorithm-forge.com/techblog/), Dieter Menne [ctb], Tyler Hunt [ctb] (https://github.com/JackStat), Takekatsu Hiramura [ctb] (https://github.com/hiratake55), Berry Boessenkool [ctb] (https://github.com/BerryBoessenkool), Jonathan Godfrey [ctb] (https://github.com/ajrgodfrey), Tom Allard [ctb], ChingChuan Chen [ctb], Jonathan Hill [ctb]
Maintainer: Tal Galili <tal.galili@gmail.com>

Diff between installr versions 0.18.0 dated 2016-11-05 and 0.19.0 dated 2017-04-21

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New package hoardr with initial version 0.1.0
Package: hoardr
Type: Package
Title: Manage Cached Files
Description: Suite of tools for managing cached files, targeting use in other R packages. Uses 'rappdirs' for cross-platform paths. Provides utilities to manage cache directories, including targeting files by path or by key; cached directories can be compressed and uncompressed easily to save disk space.
Version: 0.1.0
Authors@R: c(person("Scott", "Chamberlain", role = c("aut", "cre"), email = "myrmecocystus@gmail.com"))
License: MIT + file LICENSE
URL: https://github.com/ropensci/hoardr
BugReports: https://github.com/ropensci/hoardr/issues
VignetteBuilder: knitr
Imports: R6 (>= 2.2.0), rappdirs (>= 0.3.1)
Suggests: roxygen2 (>= 6.0.1), testthat, knitr, rmarkdown
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-21 15:48:08 UTC; sacmac
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Repository: CRAN
Date/Publication: 2017-04-21 18:27:33 UTC

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New package fasjem with initial version 1.0.0
Package: fasjem
Version: 1.0.0
Date: 2017-04-21
Title: A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models
Authors@R: c(person("Beilun", "Wang", role = c("aut", "cre"), email = "bw4mw@virginia.edu"), person("Yanjun", "Qi", role = "aut", email = "yanjun@virginia.edu"))
Author: Beilun Wang [aut, cre], Yanjun Qi [aut]
Maintainer: Beilun Wang <bw4mw@virginia.edu>
Depends: R (>= 3.0.0)
Description: The FASJEM (A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models) is a joint estimator which is fast and scalable for learning multiple related sparse Gaussian graphical models. For more details, please see <https://www.cs.virginia.edu/yanjun/paperA14/2017_JEM_combined.pdf>.
License: GPL-2
URL: https://www.cs.virginia.edu/~bw4mw, https://github.com/QData/JEM
BugReports: https://github.com/QData/JEM
NeedsCompilation: no
Packaged: 2017-04-21 13:02:25 UTC; beilunwang
Repository: CRAN
Date/Publication: 2017-04-21 18:27:31 UTC

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Package earth updated to version 4.5.0 with previous version 4.4.9.1 dated 2017-03-21

Title: Multivariate Adaptive Regression Splines
Description: Build regression models using the techniques in Friedman's papers "Fast MARS" and "Multivariate Adaptive Regression Splines". (The term "MARS" is trademarked and thus not used in the name of the package.)
Author: Stephen Milborrow. Derived from mda:mars by Trevor Hastie and Rob Tibshirani. Uses Alan Miller's Fortran utilities with Thomas Lumley's leaps wrapper.
Maintainer: Stephen Milborrow <milbo@sonic.net>

Diff between earth versions 4.4.9.1 dated 2017-03-21 and 4.5.0 dated 2017-04-21

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Package DMRMark updated to version 1.1.1 with previous version 1.1.0 dated 2017-02-25

Title: DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data
Description: Perform differential analysis for methylation array data. Detect differentially methylated regions (DMRs) from array M-values. The core is a Non-homogeneous Hidden Markov Model for estimating spatial correlation and a novel Constrained Gaussian Mixture Model for modeling the M-value pairs of each individual locus.
Author: Linghao SHEN <sl013@ie.cuhk.edu.hk>
Maintainer: Linghao SHEN <sl013@ie.cuhk.edu.hk>

Diff between DMRMark versions 1.1.0 dated 2017-02-25 and 1.1.1 dated 2017-04-21

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Package tidyjson updated to version 0.2.2 with previous version 0.2.1 dated 2015-05-02

Title: A Grammar for Turning 'JSON' into Tidy Tables
Description: An easy and consistent way to turn 'JSON' into tidy data frames that are natural to work with in 'dplyr', 'ggplot2' and other tools.
Author: Jeremy Stanley <jeremy.stanley@gmail.com>
Maintainer: ORPHANED

Diff between tidyjson versions 0.2.1 dated 2015-05-02 and 0.2.2 dated 2017-04-21

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Package regress updated to version 1.3-15 with previous version 1.3-14 dated 2014-07-14

Title: Gaussian Linear Models with Linear Covariance Structure
Description: Functions to fit Gaussian linear model by maximising the residual log likelihood where the covariance structure can be written as a linear combination of known matrices. Can be used for multivariate models and random effects models. Easy straight forward manner to specify random effects models, including random interactions. Code now optimised to use Sherman Morrison Woodbury identities for matrix inversion in random effects models. We've added the ability to fit models using any kernel as well as a function to return the mean and covariance of random effects conditional on the data (BLUPs).
Author: David Clifford and Peter McCullagh. Additional contributions by HJ Auinger.
Maintainer: ORPHANED

Diff between regress versions 1.3-14 dated 2014-07-14 and 1.3-15 dated 2017-04-21

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Package plspm updated to version 0.4.8 with previous version 0.4.7 dated 2015-05-25

Title: Tools for Partial Least Squares Path Modeling (PLS-PM)
Description: Partial Least Squares Path Modeling (PLS-PM) analysis for both metric and non-metric data, as well as REBUS analysis.
Author: Gaston Sanchez [aut, cre], Laura Trinchera [aut], Giorgio Russolillo [aut]
Maintainer: ORPHANED

Diff between plspm versions 0.4.7 dated 2015-05-25 and 0.4.8 dated 2017-04-21

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Package Metrics updated to version 0.1.2 with previous version 0.1.1 dated 2012-06-20

Title: Evaluation Metrics for Machine Learning
Description: Metrics is a set of evaluation metrics that is commonly used in supervised machine learning.
Author: Ben Hamner <ben@benhamner.com>
Maintainer: ORPHANED

Diff between Metrics versions 0.1.1 dated 2012-06-20 and 0.1.2 dated 2017-04-21

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Package synbreed updated to version 0.12-6 with previous version 0.12-5 dated 2017-04-20

Title: Framework for the Analysis of Genomic Prediction Data using R
Description: A collection of functions required for genomic prediction which were developed within the Synbreed project for synergistic plant and animal breeding (<http://www.synbreed.tum.de>). This covers data processing, data visualization, and analysis. All functions are embedded within the framework of a single, unified data object. The implementation is flexible with respect to a wide range of data formats in plant and animal breeding. This research was funded by the German Federal Ministry of Education and Research (BMBF) within the AgroClustEr Synbreed - Synergistic plant and animal breeding (FKZ 0315528A).
Author: Hans-Juergen Auinger, Valentin Wimmer, Theresa Albrecht, Chris-Carolin Schoen with contributions by Larry Schaeffer, Malena Erbe, Ulrike Ober, Christian Reimer, Yvonne Badke and Peter VandeHaar
Maintainer: Hans-Juergen Auinger <auinger@tum.de>

Diff between synbreed versions 0.12-5 dated 2017-04-20 and 0.12-6 dated 2017-04-21

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New package safer with initial version 0.1.0
Package: safer
Type: Package
Title: Encrypt and Decrypt Strings, R Objects and Files
Version: 0.1.0
Authors@R: person("KS", "Srikanth", email = "sri.teach@gmail.com", role = c("aut", "cre"))
Description: A consistent interface to encrypt and decrypt strings, R objects and files using symmetric key encryption.
Imports: sodium (>= 0.4), base64enc (>= 0.1.3), assertthat (>= 0.1)
Depends: R (>= 3.3.2)
License: GPL-3
URL: https://github.com/talegari/safer
BugReports: https://github.com/talegari/safer/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-21 13:39:02 UTC; srik
Author: KS Srikanth [aut, cre]
Maintainer: KS Srikanth <sri.teach@gmail.com>
Repository: CRAN
Date/Publication: 2017-04-21 13:49:28 UTC

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Package rpart updated to version 4.1-11 with previous version 4.1-10 dated 2015-06-29

Title: Recursive Partitioning and Regression Trees
Description: Recursive partitioning for classification, regression and survival trees. An implementation of most of the functionality of the 1984 book by Breiman, Friedman, Olshen and Stone.
Author: Terry Therneau [aut], Beth Atkinson [aut], Brian Ripley [aut, trl, cre] (author of initial R port)
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>

Diff between rpart versions 4.1-10 dated 2015-06-29 and 4.1-11 dated 2017-04-21

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New package RHMS with initial version 1.0
Package: RHMS
Type: Package
Title: Hydrologic Modelling System for R Users
Version: 1.0
Depends: R (>= 3.0.0), graphics, stats, pso, Hmisc
Date: 2017-03-28
Author: Rezgar Arabzadeh ; Shahab Araghinejad
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>
Description: Hydrologic modelling system provides functionalities to R users to simulate hydrologic events. The packages includes functions to build, simulate, visualize, and calibrating hydrologic features.
License: GPL-2
NeedsCompilation: no
Packaged: 2017-04-21 13:18:58 UTC; parisa
Repository: CRAN
Date/Publication: 2017-04-21 13:50:28 UTC

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Package ratesci updated to version 0.2-0 with previous version 0.1-0 dated 2016-11-12

Title: Confidence Intervals for Comparisons of Binomial or Poisson Rates
Description: Computes confidence intervals for the rate (or risk) difference ("RD") or rate ratio (or relative risk, "RR") for binomial proportions or Poisson rates, or for odds ratio ("OR", binomial only). Also confidence intervals for a single binomial or Poisson rate, and intervals for matched pairs. Includes asymptotic score methods including skewness corrections, which have been developed in Laud (2017, in press) from Miettinen & Nurminen (1985) <doi:10.1002/sim.4780040211> and Gart & Nam (1988) <doi:10.2307/2531848>. Also includes MOVER methods (Method Of Variance Estimates Recovery), derived from the Newcombe method but using equal-tailed Jeffreys intervals, and generalised for incorporating prior information. Also methods for stratified calculations (e.g. meta-analysis), either assuming fixed effects or incorporating stratum heterogeneity.
Author: Pete Laud [aut, cre]
Maintainer: Pete Laud <p.j.laud@sheffield.ac.uk>

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Package MASS updated to version 7.3-47 with previous version 7.3-45 dated 2015-11-10

Title: Support Functions and Datasets for Venables and Ripley's MASS
Description: Functions and datasets to support Venables and Ripley, "Modern Applied Statistics with S" (4th edition, 2002).
Author: Brian Ripley [aut, cre, cph], Bill Venables [ctb], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>

Diff between MASS versions 7.3-45 dated 2015-11-10 and 7.3-47 dated 2017-04-21

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Package huxtable updated to version 0.2.0 with previous version 0.1.1 dated 2017-03-14

Title: Simply Create LaTeX and HTML Tables
Description: Creates HTML and LaTeX tables. Provides similar functionality to 'xtable', but does more, with a simpler interface.
Author: David Hugh-Jones
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>

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Package boot updated to version 1.3-19 with previous version 1.3-18 dated 2016-02-23

Title: Bootstrap Functions (Originally by Angelo Canty for S)
Description: Functions and datasets for bootstrapping from the book "Bootstrap Methods and Their Application" by A. C. Davison and D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.
Author: Angelo Canty [aut], Brian Ripley [aut, trl, cre] (author of parallel support)
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>

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Package Quor (with last version 0.1) was removed from CRAN

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2014-12-31 0.1

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2014-11-27 0.2
2014-10-30 0.1

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Package nat.templatebrains (with last version 0.6.2) was removed from CRAN

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2015-12-07 0.6.2
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2015-07-01 0.6
2014-09-16 0.4.1

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2016-05-13 1.3.0
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2012-01-31 0.1-1

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2016-02-16 2.4.1

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2016-06-24 0.2.3
2014-03-31 0.2
2013-05-25 0.1.0

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Package KENDL updated to version 1.1 with previous version 1.0 dated 2017-03-21

Title: Kernel-Smoothed Nonparametric Methods for Environmental Exposure Data Subject to Detection Limits
Description: Calculate the kernel-smoothed nonparametric estimator for the exposure distribution in presence of detection limits.
Author: Yuchen Yang <yuchen.y@uky.edu>, Li Chen <lichenuky@uky.edu>
Maintainer: Yuchen Yang <yuchen.y@uky.edu>

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Package FRK updated to version 0.1.2 with previous version 0.1.1 dated 2017-03-07

Title: Fixed Rank Kriging
Description: Fixed Rank Kriging is a tool for spatial/spatio-temporal modelling and prediction with large datasets. The approach, discussed in Cressie and Johannesson (2008) <DOI:10.1111/j.1467-9868.2007.00633.x>, decomposes the field, and hence the covariance function, using a fixed set of n basis functions, where n is typically much smaller than the number of data points (or polygons) m. The method naturally allows for non-stationary, anisotropic covariance functions and the use of observations with varying support (with known error variance). The projected field is a key building block of the Spatial Random Effects (SRE) model, on which this package is based. The package FRK provides helper functions to model, fit, and predict using an SRE with relative ease.
Author: Andrew Zammit-Mangion [aut, cre], Timothy Davis [ctb], Patrick Amestoy [ctb], Iain Duff [ctb], John K. Reid [ctb]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>

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Package vennplot updated to version 0.9.02 with previous version 0.9.01 dated 2017-04-14

Title: Venn Diagrams in 2D and 3D
Description: Calculate and plot Venn diagrams in 2D and 3D.
Author: Zehao Xu [aut, cre], R. Wayne Oldford [ctb], Martin Lysy [ctb]
Maintainer: Zehao Xu <z267xu@uwaterloo.ca>

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Package unix updated to version 1.3 with previous version 1.0 dated 2017-04-03

Title: Unix System Utilities
Description: Bindings to system utilities found in most Unix systems such as POSIX functions which are not part of the Standard C Library.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

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Package spocc updated to version 0.7.0 with previous version 0.6.0 dated 2016-12-07

Title: Interface to Species Occurrence Data Sources
Description: A programmatic interface to many species occurrence data sources, including Global Biodiversity Information Facility ('GBIF'), 'USGSs' Biodiversity Information Serving Our Nation ('BISON'), 'iNaturalist', Berkeley 'Ecoinformatics' Engine, 'eBird', 'AntWeb', Integrated Digitized 'Biocollections' ('iDigBio'), 'VertNet', Ocean 'Biogeographic' Information System ('OBIS'), and Atlas of Living Australia ('ALA'). Includes functionality for retrieving species occurrence data, and combining those data.
Author: Scott Chamberlain [aut, cre], Karthik Ram [ctb], Ted Hart [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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 spocc-0.7.0/spocc/tests/testthat/test-occ2df.R |    2 
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 70 files changed, 1425 insertions(+), 1199 deletions(-)

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Permanent link

New package simMP with initial version 0.17.3
Package: simMP
Type: Package
Title: Simulate Somatic Mutations in Cancer Genomes from Mutational Processes
Version: 0.17.3
Author: Nan Zhou
Maintainer: Nan Zhou <zhnanx@gmail.com>
Description: Simulates somatic single base substitutions carried in cancer genomes. By only providing a human reference genome, substitutions that result from mutational processes operative in every cancer genome can be generated.
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: Biostrings, BSgenome, GenomeInfoDb, GenomicRanges, IRanges, XVector
Depends: R (>= 3.0.0), doParallel, utils, foreach, parallel, stats
Suggests: BSgenome.Hsapiens.UCSC.hg38
NeedsCompilation: no
Packaged: 2017-04-21 03:42:12 UTC; mq44741340
Repository: CRAN
Date/Publication: 2017-04-21 06:03:09 UTC

More information about simMP at CRAN
Permanent link

Package Rgb updated to version 1.5.1 with previous version 1.5.0 dated 2017-03-03

Title: The R Genome Browser
Description: Classes and methods to efficiently handle (slice, annotate, draw ...) genomic features (such as genes or transcripts), and an interactive interface to browse them.
Author: Sylvain Mareschal
Maintainer: Sylvain Mareschal <maressyl@gmail.com>

Diff between Rgb versions 1.5.0 dated 2017-03-03 and 1.5.1 dated 2017-04-21

 DESCRIPTION        |    8 ++++----
 MD5                |   12 ++++++------
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 7 files changed, 35 insertions(+), 20 deletions(-)

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Package RcppCCTZ updated to version 0.2.2 with previous version 0.2.1 dated 2017-02-04

Title: 'Rcpp' Bindings for the 'CCTZ' Library
Description: 'Rcpp' Access to the 'CCTZ' timezone library is provided. 'CCTZ' is a C++ library for translating between absolute and civil times using the rules of a time zone. The 'CCTZ' source code, released under the Apache 2.0 License, is included in this package. See <https://github.com/google/cctz> for more details.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppCCTZ versions 0.2.1 dated 2017-02-04 and 0.2.2 dated 2017-04-21

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 26 files changed, 1001 insertions(+), 740 deletions(-)

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Permanent link

Package rcompanion updated to version 1.5.6 with previous version 1.5.0 dated 2017-03-03

Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of Extension Education Program Evaluation in R" and "An R Companion for the Handbook of Biological Statistics". Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>

Diff between rcompanion versions 1.5.0 dated 2017-03-03 and 1.5.6 dated 2017-04-21

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More information about rcompanion at CRAN
Permanent link

Package Morpho updated to version 2.5.1 with previous version 2.5 dated 2017-04-05

Title: Calculations and Visualisations Related to Geometric Morphometrics
Description: A toolset for Geometric Morphometrics and mesh processing. This includes (among other stuff) mesh deformations based on reference points, permutation tests, detection of outliers, processing of sliding semi-landmarks and semi-automated surface landmark placement.
Author: Stefan Schlager [aut, cre, cph], Gregory Jefferis [ctb]
Maintainer: Stefan Schlager <zarquon42@gmail.com>

Diff between Morpho versions 2.5 dated 2017-04-05 and 2.5.1 dated 2017-04-21

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 6 files changed, 26 insertions(+), 14 deletions(-)

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Permanent link

Package memoise updated to version 1.1.0 with previous version 1.0.0 dated 2016-01-29

Title: Memoisation of Functions
Description: Cache the results of a function so that when you call it again with the same arguments it returns the pre-computed value.
Author: Hadley Wickham [aut], Jim Hester [aut, cre], Kirill Müller [aut], Daniel Cook [aut]
Maintainer: Jim Hester <jim.hester@rstudio.com>

Diff between memoise versions 1.0.0 dated 2016-01-29 and 1.1.0 dated 2017-04-21

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More information about memoise at CRAN
Permanent link

Package Hotelling updated to version 1.0-3 with previous version 1.0-2 dated 2013-11-06

Title: Hotelling's T^2 Test and Variants
Description: A set of R functions which implements Hotelling's T^2 test and some variants of it. Functions are also included for Aitchison's additive log ratio and centred log ratio transformations.
Author: James Curran [aut, cre]
Maintainer: James Curran <j.curran@auckland.ac.nz>

Diff between Hotelling versions 1.0-2 dated 2013-11-06 and 1.0-3 dated 2017-04-21

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More information about Hotelling at CRAN
Permanent link

Package gam updated to version 1.14-3 with previous version 1.14 dated 2016-09-10

Title: Generalized Additive Models
Description: Functions for fitting and working with generalized additive models, as described in chapter 7 of "Statistical Models in S" (Chambers and Hastie (eds), 1991), and "Generalized Additive Models" (Hastie and Tibshirani, 1990).
Author: Trevor Hastie
Maintainer: Trevor Hastie <hastie@stanford.edu>

Diff between gam versions 1.14 dated 2016-09-10 and 1.14-3 dated 2017-04-21

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More information about gam at CRAN
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Package FREGAT updated to version 1.0.3 with previous version 1.0.2 dated 2016-09-19

Title: Family REGional Association Tests
Description: Fast regional association analysis of quantitative traits for family-based and population studies.
Author: Nadezhda M. Belonogova <belon@bionet.nsc.ru> and Gulnara R. Svishcheva <gulsvi@mail.ru>, with contributions from: Seunggeun Lee (kernel functions), Pierre Lafaye de Micheaux ('davies' method), Thomas Lumley ('kuonen' method), James O. Ramsay (functional data analysis functions), David Clayton ('read.plink' function) and Brian Ripley ('ginv' function)
Maintainer: Nadezhda M. Belonogova <belon@bionet.nsc.ru>

Diff between FREGAT versions 1.0.2 dated 2016-09-19 and 1.0.3 dated 2017-04-21

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Permanent link

New package fastDummies with initial version 0.1.0
Package: fastDummies
Type: Package
Title: Fast Creation of Dummy (Binary) Columns from Categorical Variables
Version: 0.1.0
Authors@R: person("Jacob", "Kaplan", email = "jacobkap@sas.upenn.edu", role = c("aut", "cre"))
Description: Creates dummy columns from columns that have categorical variables (character or factor types). This package provides a significant speed increase from creating dummy variables through model.matrix().
Depends: R (>= 2.10)
Imports: data.table
License: GPL
Encoding: UTF-8
LazyData: true
URL: https://github.com/jacobkap/fastDummies
BugReports: https://github.com/jacobkap/fastDummies/issues
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-21 02:25:15 UTC; user
Author: Jacob Kaplan [aut, cre]
Maintainer: Jacob Kaplan <jacobkap@sas.upenn.edu>
Repository: CRAN
Date/Publication: 2017-04-21 06:04:38 UTC

More information about fastDummies at CRAN
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Package depend.truncation updated to version 2.6 with previous version 2.5 dated 2016-04-14

Title: Statistical Inference for Parametric and Semiparametric Models Based on Dependently Truncated Data
Description: Suppose that one can observe bivariate random variables (X, Y) only when X<=Y holds. Data (Xj, Yj), subject to Xj<=Yj, for all j=1,...,n, are called truncated data. For truncated data, several different approaches are implemented for statistical inference on (X, Y), when X and Y are dependent. Also included is truncated data on the number of deaths at each year (1963-1980) for Japanese male centenarians.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>

Diff between depend.truncation versions 2.5 dated 2016-04-14 and 2.6 dated 2017-04-21

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More information about depend.truncation at CRAN
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Package dat updated to version 0.2.0 with previous version 0.1.0 dated 2017-01-06

Title: Tools for Data Manipulation
Description: An implementation of common higher order functions with syntactic sugar for anonymous function. Provides also a link to 'dplyr' for common transformations on data frames to work around non standard evaluation by default.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>

Diff between dat versions 0.1.0 dated 2017-01-06 and 0.2.0 dated 2017-04-21

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Package CrossScreening updated to version 0.1.1 with previous version 0.0.1 dated 2017-03-12

Title: Cross-Screening in Observational Studies that Test Many Hypotheses
Description: Cross-screening is a new method that uses both random halves of the sample to screen and test many hypotheses. It generally improves statistical power in observational studies when many hypotheses are tested simultaneously. References: 1. Qingyuan Zhao, Dylan S Small, and Paul R Rosenbaum. Cross-screening in observational studies that test many hypotheses. <arXiv:1703.02078>. 2. Qingyuan Zhao. On sensitivity value of pair-matched observational studies. <arXiv:1702.03442>.
Author: Paul Rosenbaum [aut], Qingyuan Zhao [aut, cre]
Maintainer: Qingyuan Zhao <qyzhao@wharton.upenn.edu>

Diff between CrossScreening versions 0.0.1 dated 2017-03-12 and 0.1.1 dated 2017-04-21

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More information about CrossScreening at CRAN
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Package clifro updated to version 3.1-4 with previous version 3.1-3 dated 2017-03-16

Title: Easily Download and Visualise Climate Data from CliFlo
Description: CliFlo is a web portal to the New Zealand National Climate Database and provides public access (via subscription) to around 6,500 various climate stations (see <https://cliflo.niwa.co.nz/> for more information). Collating and manipulating data from CliFlo (hence clifro) and importing into R for further analysis, exploration and visualisation is now straightforward and coherent. The user is required to have an internet connection, and a current CliFlo subscription (free) if data from stations, other than the public Reefton electronic weather station, is sought.
Author: Blake Seers [aut, cre]
Maintainer: Blake Seers <blake.seers@gmail.com>

Diff between clifro versions 3.1-3 dated 2017-03-16 and 3.1-4 dated 2017-04-21

 DESCRIPTION                   |   10 +++++-----
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Thu, 20 Apr 2017

Package units updated to version 0.4-4 with previous version 0.4-3 dated 2017-03-25

Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors; automatic propagation, conversion, derivation and simplification of units; raising errors in case of unit incompatibility. Compatible with the difftime class. Uses the UNIDATA udunits library and unit database for unit conversion and compatibility checking.
Author: Edzer Pebesma [aut, cre], Thomas Mailund [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

Diff between units versions 0.4-3 dated 2017-03-25 and 0.4-4 dated 2017-04-20

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 vignettes/measurement_units_in_R.Rmd |    2 
 10 files changed, 82 insertions(+), 68 deletions(-)

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Package rpart.plot updated to version 2.1.2 with previous version 2.1.1 dated 2017-02-17

Title: Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Description: Plot 'rpart' models. Extends plot.rpart() and text.rpart() in the 'rpart' package.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>

Diff between rpart.plot versions 2.1.1 dated 2017-02-17 and 2.1.2 dated 2017-04-20

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 MD5                                            |   32 ++++++++---------
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New package nonmemica with initial version 0.7.1
Package: nonmemica
Type: Package
Title: Create and Evaluate NONMEM Models in a Project Context
Version: 0.7.1
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Description: Systematically creates and modifies NONMEM(R) control streams. Harvests NONMEM output, builds run logs, creates derivative data, generates diagnostics. NONMEM (ICON Development Solutions <http://www.iconplc.com/>) is software for nonlinear mixed effects modeling. See 'package?nonmemica'.
License: GPL-3
LazyData: TRUE
Imports: dplyr, tidyr, xml2, encode, csv, fold, spec, lazyeval, metaplot, magrittr
Suggests: ReporteRs, pander, knitr, wrangle
RoxygenNote: 6.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-04-20 16:26:54 UTC; tbergsma
Repository: CRAN
Date/Publication: 2017-04-20 23:16:50 UTC

More information about nonmemica at CRAN
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Package gistr updated to version 0.4.0 with previous version 0.3.6 dated 2015-12-23

Title: Work with 'GitHub' 'Gists'
Description: Work with 'GitHub' 'gists' from 'R' (e.g., <http://en.wikipedia.org/wiki/GitHub#Gist>, <https://help.github.com/articles/about-gists/>). A 'gist' is simply one or more files with code/text/images/etc. This package allows the user to create new 'gists', update 'gists' with new files, rename files, delete files, get and delete 'gists', star and 'un-star' 'gists', fork 'gists', open a 'gist' in your default browser, get embed code for a 'gist', list 'gist' 'commits', and get rate limit information when 'authenticated'. Some requests require authentication and some do not. 'Gists' website: <https://gist.github.com/>.
Author: Scott Chamberlain [aut, cre], Ramnath Vaidyanathan [aut], Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between gistr versions 0.3.6 dated 2015-12-23 and 0.4.0 dated 2017-04-20

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Package WufooR updated to version 0.6.2 with previous version 0.6.1 dated 2016-03-08

Title: R Wrapper for the 'Wufoo.com' - The Form Building Service
Description: Allows form managers to download entries from their respondents using Wufoo JSON API (<https://www.wufoo.com>). Additionally, the Wufoo reports - when public - can be also acquired programmatically. Note that building new forms within this package is not supported.
Author: John Malc [aut, cre] (@dmpe), Maksim Pecherskiy [ctb] (@MrMaksimize)
Maintainer: John Malc <cincenko@outlook.com>

Diff between WufooR versions 0.6.1 dated 2016-03-08 and 0.6.2 dated 2017-04-20

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Package treatSens updated to version 2.1.1 with previous version 2.1 dated 2017-04-06

Title: Sensitivity Analysis for Causal Inference
Description: Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment.
Author: Nicole Bohme Carnegie [aut, cre], Masataka Harada [aut], Vincent Dorie [aut], Jennifer Hill [ctb]
Maintainer: Nicole Bohme Carnegie <carnegin@uwm.edu>

Diff between treatSens versions 2.1 dated 2017-04-06 and 2.1.1 dated 2017-04-20

 DESCRIPTION |    6 
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 3 files changed, 7136 insertions(+), 7136 deletions(-)

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Package sys updated to version 1.3 with previous version 1.2 dated 2017-04-01

Title: Portable System Utilities
Description: Powerful replacements for base system2 with consistent behavior across platforms. Supports interruption, background tasks, and full control over STDOUT / STDERR binary or text streams. On Unix systems the package also has functions for evaluating expressions inside a temporary fork. Such evaluations have no side effects on the main R process, and support reliable interrupts and timeouts. This provides the basis for a sandboxing mechanism.
Author: Jeroen Ooms [aut, cre], Gábor Csárdi [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between sys versions 1.2 dated 2017-04-01 and 1.3 dated 2017-04-20

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 23 files changed, 373 insertions(+), 150 deletions(-)

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Package LOST updated to version 1.3 with previous version 1.2 dated 2016-06-22

Title: Missing Morphometric Data Simulation and Estimation
Description: Functions for simulating missing morphometric data randomly, with taxonomic bias and with anatomical bias. LOST also includes functions for estimating linear and geometric morphometric data.
Author: J. Arbour, C. Brown
Maintainer: J. Arbour <jarbour@uw.edu>

Diff between LOST versions 1.2 dated 2016-06-22 and 1.3 dated 2017-04-20

 DESCRIPTION         |   10 +++++-----
 MD5                 |   10 ++++++----
 NAMESPACE           |    5 +++--
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