Title: Patient Subgroup Identification for Clinical Drug Development
Description: Implementation of Sequential BATTing (bootstrapping and aggregating of thresholds from trees) for developing threshold-based multivariate (prognostic/predictive) biomarker signatures. Variable selection is automatically built-in. Final signatures are returned with interaction plots for predictive signatures. Cross-validation performance evaluation and testing dataset results are also output. Detail algorithms are described in Huang et al (2017) <doi:10.1002/sim.7236>.
Author: Xin Huang [aut, cre, cph],
Yan Sun [aut],
Saptarshi Chatterjee [aut],
Paul Trow [aut]
Maintainer: Xin Huang <xin.huang@abbvie.com>
Diff between SubgrpID versions 0.12 dated 2024-02-03 and 0.13 dated 2026-03-07
SubgrpID-0.12/SubgrpID/R/filter.R |only SubgrpID-0.12/SubgrpID/man/filter.Rd |only SubgrpID-0.12/SubgrpID/man/filter.glmnet.Rd |only SubgrpID-0.12/SubgrpID/man/filter.unicart.Rd |only SubgrpID-0.12/SubgrpID/man/filter.univariate.Rd |only SubgrpID-0.13/SubgrpID/DESCRIPTION | 9 - SubgrpID-0.13/SubgrpID/MD5 | 20 +- SubgrpID-0.13/SubgrpID/NAMESPACE | 2 SubgrpID-0.13/SubgrpID/R/cross_validation_functions.R | 150 +++++++++++------ SubgrpID-0.13/SubgrpID/R/master_function.R | 48 +++-- SubgrpID-0.13/SubgrpID/R/prefilter_variables.R |only SubgrpID-0.13/SubgrpID/R/sequential_batting.R | 93 +++++++--- SubgrpID-0.13/SubgrpID/man/dot-prefilter_glmnet.Rd |only SubgrpID-0.13/SubgrpID/man/dot-prefilter_unicart.Rd |only SubgrpID-0.13/SubgrpID/man/dot-prefilter_univariate.Rd |only SubgrpID-0.13/SubgrpID/man/prefilter_variables.Rd |only 16 files changed, 218 insertions(+), 104 deletions(-)
Title: Statistical Modeling of Animal Movements
Description: Animal movement models including Moving-Resting Process
with Embedded Brownian Motion
(Yan et al., 2014, <doi:10.1007/s10144-013-0428-8>;
Pozdnyakov et al., 2017, <doi:10.1007/s11009-017-9547-6>),
Brownian Motion with Measurement Error
(Pozdnyakov et al., 2014, <doi:10.1890/13-0532.1>),
Moving-Resting-Handling Process with Embedded Brownian Motion
(Pozdnyakov et al., 2020, <doi:10.1007/s11009-020-09774-1>),
Moving-Resting Process with Measurement Error
(Hu et al., 2021, <doi:10.1111/2041-210X.13694>),
Moving-Moving Process with two Embedded Brownian Motions.
Author: Chaoran Hu [aut, cre],
Vladimir Pozdnyakov [aut],
Jun Yan [aut]
Maintainer: Chaoran Hu <huchaoran.stat@gmail.com>
Diff between smam versions 0.7.2 dated 2024-01-10 and 0.7.3 dated 2026-03-07
DESCRIPTION | 8 +- MD5 | 12 ++-- NEWS.md | 4 + configure | 18 +++--- configure.ac | 2 inst/CITATION | 10 +-- src/RcppExports.cpp | 154 ++++++++++++++++++++++++++-------------------------- 7 files changed, 106 insertions(+), 102 deletions(-)
Title: A Collection of Efficient and Extremely Fast R Functions II
Description: A collection of fast statistical and utility functions for data analysis. Functions for regression, maximum likelihood, column-wise statistics and many more have been included. C++ has been utilized to speed up the functions. References: Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>.
Author: Manos Papadakis [aut, cre, cph],
Michail Tsagris [aut],
Stefanos Fafalios [aut],
Marios Dimitriadis [aut],
Manos Lasithiotakis [aut],
Nikolaos Kontemeniotis [ctb]
Maintainer: Manos Papadakis <rfastofficial@gmail.com>
Diff between Rfast2 versions 0.1.5.5 dated 2025-10-14 and 0.1.5.6 dated 2026-03-07
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS.md | 15 +++++++++++++++ R/kernel.R | 3 +++ build/partial.rdb |binary inst/include/Rfast2/helpers.hpp | 6 +++--- inst/include/Rfast2/matrix.hpp | 4 ++-- inst/include/Rfast2/templates.h | 26 +++++++++++++------------- inst/include/Rfast2/templates_rfast2.h | 6 +++--- inst/include/Rfast2/vector.hpp | 16 ++++++++-------- man/boot.james.Rd | 5 ++--- man/boot.student2.Rd | 5 ++--- man/moranI.Rd | 7 ++++--- src/Random.cpp | 4 ++-- src/Random.h | 6 +++--- src/mn.cpp | 4 ++-- 16 files changed, 81 insertions(+), 64 deletions(-)
Title: Multimodal Access and Interactive Data Representation
Description: Provides accessible, interactive visualizations through the 'MAIDR'
(Multimodal Access and Interactive Data Representation) system. Converts
'ggplot2' and Base R plots into accessible HTML/SVG formats with keyboard
navigation, screen reader support, and 'sonification' capabilities. Supports
bar charts (simple, grouped, stacked), histograms, line plots, scatter plots,
box plots, violin plots, heat maps, density/smooth curves, faceted plots,
multi-panel layouts (including patchwork), and multi-layered plot combinations. Enables
data exploration for users with visual impairments through multiple sensory
modalities. For more details see the 'MAIDR' project
<https://maidr.ai/>.
Author: JooYoung Seo [aut, cph],
Niranjan Kalaiselvan [aut, cre]
Maintainer: Niranjan Kalaiselvan <nk46@illinois.edu>
Diff between maidr versions 0.1.2 dated 2026-02-23 and 0.2.0 dated 2026-03-07
maidr-0.1.2/maidr/inst/htmlwidgets/lib/maidr-3.50.0 |only maidr-0.2.0/maidr/DESCRIPTION | 10 maidr-0.2.0/maidr/MD5 | 134 +- maidr-0.2.0/maidr/NAMESPACE | 35 maidr-0.2.0/maidr/NEWS.md | 32 maidr-0.2.0/maidr/R/base_r_function_patching.R | 82 + maidr-0.2.0/maidr/R/base_r_wrapper_exports.R |only maidr-0.2.0/maidr/R/ggplot2_adapter.R | 4 maidr-0.2.0/maidr/R/ggplot2_bar_layer_processor.R | 70 - maidr-0.2.0/maidr/R/ggplot2_dodged_bar_layer_processor.R | 25 maidr-0.2.0/maidr/R/ggplot2_plot_orchestrator.R | 87 + maidr-0.2.0/maidr/R/ggplot2_print_method.R |only maidr-0.2.0/maidr/R/ggplot2_processor_factory.R | 3 maidr-0.2.0/maidr/R/ggplot2_stacked_bar_layer_processor.R | 179 +++ maidr-0.2.0/maidr/R/ggplot2_system_init.R | 35 maidr-0.2.0/maidr/R/ggplot2_violin_layer_processor.R |only maidr-0.2.0/maidr/R/html_dependencies.R | 2 maidr-0.2.0/maidr/R/knitr_support.R | 116 +- maidr-0.2.0/maidr/R/layer_processor.R | 18 maidr-0.2.0/maidr/R/maidr.R | 20 maidr-0.2.0/maidr/R/maidr_options.R |only maidr-0.2.0/maidr/R/rdp_utils.R |only maidr-0.2.0/maidr/R/svg_utils.R | 154 +++ maidr-0.2.0/maidr/README.md | 10 maidr-0.2.0/maidr/inst/doc/getting-started.html | 4 maidr-0.2.0/maidr/inst/doc/plot-types.R | 28 maidr-0.2.0/maidr/inst/doc/plot-types.Rmd | 40 maidr-0.2.0/maidr/inst/doc/plot-types.html | 461 +++++----- maidr-0.2.0/maidr/inst/doc/shiny-integration.html | 4 maidr-0.2.0/maidr/inst/examples/ggplot2/violin.R |only maidr-0.2.0/maidr/inst/examples/ggplot2_all_plot_types_example.R | 52 - maidr-0.2.0/maidr/inst/htmlwidgets/lib/maidr-3.55.2 |only maidr-0.2.0/maidr/inst/htmlwidgets/maidr.yaml | 4 maidr-0.2.0/maidr/man/BaseRBarplotLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRBoxplotLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRDodgedBarLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRHeatmapLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRHistogramLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRLineLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRPointLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRSmoothLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRStackedBarLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRUnknownLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2BarLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2BoxplotLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2DodgedBarLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2HeatmapLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2HistogramLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2LineLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2PointLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2SmoothLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2StackedBarProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2UnknownLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2ViolinLayerProcessor.Rd |only maidr-0.2.0/maidr/man/LayerProcessor.Rd | 39 maidr-0.2.0/maidr/man/base-r-wrappers.Rd |only maidr-0.2.0/maidr/man/cancel_auto_show.Rd |only maidr-0.2.0/maidr/man/dot-maidr_ggplot_state.Rd |only maidr-0.2.0/maidr/man/dot-maidr_patching_env.Rd | 2 maidr-0.2.0/maidr/man/initialize_maidr_options.Rd |only maidr-0.2.0/maidr/man/inject_violin_kde_svg_coords.Rd |only maidr-0.2.0/maidr/man/is_base_r_enabled.Rd |only maidr-0.2.0/maidr/man/is_ggplot2_enabled.Rd |only maidr-0.2.0/maidr/man/is_maidr_enabled.Rd |only maidr-0.2.0/maidr/man/maidr-options.Rd |only maidr-0.2.0/maidr/man/maidr_off.Rd | 4 maidr-0.2.0/maidr/man/maidr_on.Rd | 12 maidr-0.2.0/maidr/man/maidr_print_ggplot.Rd |only maidr-0.2.0/maidr/man/perpendicular_distance.Rd |only maidr-0.2.0/maidr/man/rdp.Rd |only maidr-0.2.0/maidr/man/register_ggplot2_print_method.Rd |only maidr-0.2.0/maidr/man/restore_ggplot2_print_method.Rd |only maidr-0.2.0/maidr/man/save_html.Rd | 10 maidr-0.2.0/maidr/man/schedule_auto_show.Rd |only maidr-0.2.0/maidr/man/show.Rd | 10 maidr-0.2.0/maidr/man/simplify_curve.Rd |only maidr-0.2.0/maidr/tests/testthat/Rplots.pdf |binary maidr-0.2.0/maidr/tests/testthat/helper.R | 13 maidr-0.2.0/maidr/tests/testthat/test-ggplot2-violin-layer-processor.R |only maidr-0.2.0/maidr/vignettes/plot-types.Rmd | 40 80 files changed, 1359 insertions(+), 420 deletions(-)
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol
for R. The Language Server protocol is used by an editor client to
integrate features like auto completion. See
<https://microsoft.github.io/language-server-protocol/> for details.
Author: Randy Lai [aut, cre],
Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.3.16 dated 2023-08-18 and 0.3.17 dated 2026-03-07
DESCRIPTION | 20 - MD5 | 110 ++++--- NAMESPACE | 1 NEWS.md | 30 ++ R/capabilities.R | 22 + R/code_action.R | 15 - R/completion.R | 160 ++++++++++- R/definition.R | 8 R/diagnostics.R | 61 ++++ R/document.R | 108 ++++++- R/folding.R | 12 R/formatting.R | 9 R/handlers-langfeatures.R | 74 +++++ R/handlers-textsync.R | 19 - R/hover.R | 8 R/interfaces.R | 25 + R/languageserver.R | 89 +++--- R/references.R | 117 +++++--- R/rename.R | 98 +++---- R/section.R | 14 - R/selection.R | 68 ++-- R/semantic.R |only R/session.R | 253 ------------------ R/settings.R | 4 R/signature.R | 369 ++++++++++++++++++++++++++ R/symbol.R | 92 +++++- R/task.R | 215 +++++++++++---- R/type_hierarchy.R |only R/utils.R | 88 ++++-- R/workspace.R | 19 + README.md | 39 +- src/encoding.c |only src/encoding.h |only src/languageserver.c | 10 src/match.c |only src/match.h |only src/semantic.c |only src/semantic.h |only src/token.c |only src/token.h |only tests/testthat/helper-utils.R | 86 +++++- tests/testthat/test-call-hierarchy.R | 10 tests/testthat/test-color.R | 4 tests/testthat/test-completion.R | 442 +++++++++++++++++++++++++++++--- tests/testthat/test-definition-blocks.R |only tests/testthat/test-definition.R | 28 +- tests/testthat/test-folding.R | 16 - tests/testthat/test-formatting.R | 16 - tests/testthat/test-highlight-blocks.R |only tests/testthat/test-highlight.R | 4 tests/testthat/test-hover.R | 52 ++- tests/testthat/test-link.R | 10 tests/testthat/test-lintr.R | 11 tests/testthat/test-references.R | 14 - tests/testthat/test-rename.R | 16 - tests/testthat/test-selection.R | 6 tests/testthat/test-semantic-tokens.R |only tests/testthat/test-signature.R | 186 +++++++++++++ tests/testthat/test-symbol-blocks.R |only tests/testthat/test-symbol.R | 66 ++-- tests/testthat/test-task.R |only tests/testthat/test-type-hierarchy.R |only tests/testthat/test-unicode-path.R | 8 tests/testthat/test-workspace.R | 2 64 files changed, 2304 insertions(+), 830 deletions(-)
More information about languageserver at CRAN
Permanent link
Title: 'ggplot2' Pattern Geoms
Description: Provides 'ggplot2' geoms filled with various patterns. Includes a patterned version of every 'ggplot2' geom that has a region that can be filled with a pattern. Provides a suite of 'ggplot2' aesthetics and scales for controlling pattern appearances. Supports over a dozen builtin patterns (every pattern implemented by 'gridpattern') as well as allowing custom user-defined patterns.
Author: Mike FC [aut],
Trevor L. Davis [aut, cre] ,
ggplot2 authors [aut]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between ggpattern versions 1.2.1 dated 2025-08-27 and 1.3.1 dated 2026-03-07
ggpattern-1.2.1/ggpattern/R/zxx.r |only ggpattern-1.3.1/ggpattern/DESCRIPTION | 19 ggpattern-1.3.1/ggpattern/MD5 | 86 +- ggpattern-1.3.1/ggpattern/NAMESPACE | 2 ggpattern-1.3.1/ggpattern/NEWS.md | 49 + ggpattern-1.3.1/ggpattern/R/a-geom-docs.R | 1 ggpattern-1.3.1/ggpattern/R/aaa-ggplot2-compat-plyr.R | 5 ggpattern-1.3.1/ggpattern/R/geom-.R | 2 ggpattern-1.3.1/ggpattern/R/geom-bar.R | 79 -- ggpattern-1.3.1/ggpattern/R/geom-bin2d.R | 29 ggpattern-1.3.1/ggpattern/R/geom-boxplot.R | 154 ++-- ggpattern-1.3.1/ggpattern/R/geom-col.R | 32 ggpattern-1.3.1/ggpattern/R/geom-crossbar.R | 49 + ggpattern-1.3.1/ggpattern/R/geom-density.R | 52 - ggpattern-1.3.1/ggpattern/R/geom-histogram.R | 33 ggpattern-1.3.1/ggpattern/R/geom-map.R | 12 ggpattern-1.3.1/ggpattern/R/geom-polygon.R | 51 - ggpattern-1.3.1/ggpattern/R/geom-rect.R | 43 - ggpattern-1.3.1/ggpattern/R/geom-ribbon.R | 123 --- ggpattern-1.3.1/ggpattern/R/geom-sf.R | 60 - ggpattern-1.3.1/ggpattern/R/geom-tile.R | 52 - ggpattern-1.3.1/ggpattern/R/geom-violin.R | 97 +- ggpattern-1.3.1/ggpattern/R/zxx.R |only ggpattern-1.3.1/ggpattern/R/zzz.R | 2 ggpattern-1.3.1/ggpattern/build/vignette.rds |binary ggpattern-1.3.1/ggpattern/inst/doc/developing-patterns.html | 93 +- ggpattern-1.3.1/ggpattern/inst/doc/patterns-noise.html | 377 +++++----- ggpattern-1.3.1/ggpattern/inst/doc/patterns-points.html | 193 ++--- ggpattern-1.3.1/ggpattern/inst/doc/patterns-stripes.html | 223 +++-- ggpattern-1.3.1/ggpattern/man/geom-docs.Rd | 189 +++-- ggpattern-1.3.1/ggpattern/man/ggpattern-ggproto.Rd | 12 ggpattern-1.3.1/ggpattern/man/scale_continuous.Rd | 2 ggpattern-1.3.1/ggpattern/man/scale_discrete.Rd | 2 ggpattern-1.3.1/ggpattern/man/scale_pattern_alpha_continuous.Rd | 2 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_brewer.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_continuous.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_gradient.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_grey.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_hue.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_viridis_d.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_identity.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_linetype.Rd | 2 ggpattern-1.3.1/ggpattern/man/scale_pattern_manual.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_shape.Rd | 2 ggpattern-1.3.1/ggpattern/man/scale_pattern_size_continuous.Rd | 2 45 files changed, 1124 insertions(+), 1039 deletions(-)
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models with and without asymmetry (leverage) via Markov chain Monte Carlo (MCMC) methods. Methodological details are given in Kastner and Frühwirth-Schnatter (2014) <doi:10.1016/j.csda.2013.01.002> and Hosszejni and Kastner (2019) <doi:10.1007/978-3-030-30611-3_8>; the most common use cases are described in Hosszejni and Kastner (2021) <doi:10.18637/jss.v100.i12> and Kastner (2016) <doi:10.18637/jss.v069.i05> and the package examples.
Author: Darjus Hosszejni [aut, cre] ,
Gregor Kastner [aut]
Maintainer: Darjus Hosszejni <darjus.hosszejni@icloud.com>
Diff between stochvol versions 3.2.8 dated 2025-10-13 and 3.2.9 dated 2026-03-07
DESCRIPTION | 6 ++--- MD5 | 48 +++++++++++++++++++++--------------------- NEWS.md | 5 ++++ build/partial.rdb |binary build/vignette.rds |binary data/exrates.RData |binary inst/doc/article.Rnw | 4 +-- inst/doc/article.pdf |binary inst/doc/article2.Rnw | 2 - inst/doc/article2.pdf |binary inst/doc/ref1.bib | 13 +++++------ inst/doc/ref2.bib | 6 ++--- inst/include/adaptation.hpp | 4 +-- src/sampling_latent_states.cc | 2 - src/sampling_main.cc | 8 +++---- src/sampling_parameters.cc | 6 ++--- src/single_update.cc | 2 - src/utils.h | 6 ++--- src/utils_main.cc | 30 +++++++++++++------------- src/utils_main.h | 2 - src/utils_parameters.cc | 14 ++++++------ vignettes/article.Rnw | 4 +-- vignettes/article2.Rnw | 2 - vignettes/ref1.bib | 13 +++++------ vignettes/ref2.bib | 6 ++--- 25 files changed, 93 insertions(+), 90 deletions(-)
Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal 'RPC' protocols and file formats. Additional documentation
is available in two included vignettes one of which corresponds to our 'JSS'
paper (2016, <doi:10.18637/jss.v071.i02>. A sufficiently recent version of
'Protocol Buffers' library is required; currently version 3.3.0 from 2017
is the tested minimum.
Author: Romain Francois [aut] ,
Dirk Eddelbuettel [aut, cre] ,
Murray Stokely [aut] ,
Jeroen Ooms [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RProtoBuf versions 0.4.25 dated 2026-01-11 and 0.4.26 dated 2026-03-07
ChangeLog | 32 +++++++++++++++++++++ DESCRIPTION | 13 ++++---- MD5 | 18 ++++++------ NAMESPACE | 54 ++++++++++++++++++------------------ configure | 26 ++++++++--------- configure.ac | 10 +++--- inst/NEWS.Rd | 11 +++++++ src/lookup.cpp | 2 - src/rprotobuf.h | 2 - src/wrapper_ZeroCopyInputStream.cpp | 2 - 10 files changed, 106 insertions(+), 64 deletions(-)
Title: Correct Bias in DNA Methylation Analyses
Description: Implementation of the algorithms (with minor modifications)
to correct bias in quantitative DNA methylation analyses as described
by Moskalev et al. (2011) <doi:10.1093/nar/gkr213>. Publication:
Kapsner et al. (2021) <doi:10.1002/ijc.33681>.
Author: Lorenz A. Kapsner [cre, aut, cph] ,
Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between rBiasCorrection versions 0.3.5 dated 2025-04-05 and 0.3.6 dated 2026-03-07
DESCRIPTION | 18 +- MD5 | 22 +-- NAMESPACE | 1 R/utils.R | 3 R/zzz.R | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/rBiasCorrection_benchmarking.R | 2 inst/doc/rBiasCorrection_benchmarking.html | 187 +++++++++++++++++++++++------ inst/doc/rBiasCorrection_benchmarking.qmd | 2 inst/doc/rBiasCorrection_howto.html | 187 +++++++++++++++++++++++------ vignettes/rBiasCorrection_benchmarking.qmd | 2 12 files changed, 322 insertions(+), 103 deletions(-)
More information about rBiasCorrection at CRAN
Permanent link
Title: Methods and Classes for the OMOP Common Data Model
Description: Provides definitions of core classes and methods used by analytic
pipelines that query the OMOP (Observational Medical Outcomes Partnership)
common data model.
Author: Marti Catala [aut, cre] ,
Edward Burn [aut] ,
Mike Du [ctb] ,
Yuchen Guo [ctb] ,
Adam Black [ctb] ,
Marta Alcalde-Herraiz [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between omopgenerics versions 1.3.6 dated 2026-01-28 and 1.3.7 dated 2026-03-07
DESCRIPTION | 6 MD5 | 18 NEWS.md | 5 R/classCdmReference.R | 5 R/classOmopTable.R | 7 R/importConceptSetExpression.R | 8 build/vignette.rds |binary inst/doc/cohorts.html | 2 inst/doc/logging.html | 137 +++--- inst/doc/summarised_result.html | 886 ++++++++++++++++++++-------------------- 10 files changed, 541 insertions(+), 533 deletions(-)
Title: Multidimensional Item Response Theory
Description: Analysis of discrete response data using
unidimensional and multidimensional item analysis models under the Item
Response Theory paradigm (Chalmers (2012) <doi:10.18637/jss.v048.i06>).
Exploratory and confirmatory item factor analysis models
are estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier models are available for modeling item testlets using
dimension reduction EM algorithms, while multiple group analyses and
mixed effects designs are included for detecting differential item, bundle,
and test functioning, and for modeling item and person covariates.
Finally, latent class models such as the DINA, DINO, multidimensional latent class,
mixture IRT models, and zero-inflated response models are supported, as well
as a wide family of probabilistic unfolding models.
Author: Phil Chalmers [aut, cre] ,
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb],
KwonHyun Kim [ctb],
Carl F. Falk [ctb],
Adam Meade [ctb],
Lennart Schneider [ctb],
David King [ctb],
Chen-Wei Liu [ctb],
Ogreden Oguzhan [ctb],
Samuel [...truncated...]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirt versions 1.45.1 dated 2025-09-06 and 1.46.1 dated 2026-03-07
DESCRIPTION | 36 +++--- MD5 | 122 +++++++++++----------- NAMESPACE | 6 + NEWS.md | 25 ++++ R/02a-general_methods.R | 51 +++++++++ R/02b-item_methods.R | 9 - R/03-estimation.R | 24 ++-- R/06-LoadPars.R | 16 +-- R/DIF.R | 18 +-- R/DRF.R | 53 +++++++++ R/M2.R | 4 R/MHRM.group.R | 75 ++++++++------ R/MHRM.utils.R | 27 ++--- R/MultipleGroup-methods.R | 20 +++ R/PLCI.mirt.R | 4 R/RCI.R | 70 ++++++++++++- R/RMSD_DIF.R | 2 R/SingleGroup-methods.R | 49 ++++++--- R/averageMI.R | 2 R/boot.LR.R | 2 R/extract.group.R | 5 R/extract.item.R | 9 + R/extract.mirt.R | 20 +++ R/fscores.R | 2 R/fscores.internal.R | 25 ---- R/itemfit.R | 17 ++- R/marginal_moments.R |only R/mdirt.R | 9 + R/mirt-package.R | 37 ++++++ R/mirt.R | 129 ++++++++++++++++++------ R/mirtCluster.R | 69 +++++++++--- R/multipleGroup.R | 89 ++++++++++++++-- R/read.mirt.R | 2 R/utils.R | 70 +++++++++---- R/wald.R | 2 README.md | 13 -- inst/doc/mirt-vignettes.html | 2 man/DIF.Rd | 7 - man/DRF.Rd | 12 +- man/LSAT7.Rd | 19 +++ man/PLCI.mirt.Rd | 4 man/RCI.Rd | 38 ++++++- man/SAT12.Rd | 15 ++ man/boot.LR.Rd | 2 man/extract.item.Rd | 5 man/extract.mirt.Rd | 10 + man/fscores.Rd | 2 man/head.mirt_matrix.Rd |only man/marginal_moments.Rd |only man/mdirt.Rd | 9 + man/mirt.Rd | 128 ++++++++++++++++++------ man/mirtCluster.Rd | 7 - man/multipleGroup.Rd | 60 ++++++++++- man/plot-method.Rd | 10 + man/print.mirt_matrix.Rd | 3 man/residuals-method.Rd | 4 man/tail.mirt_matrix.Rd |only src/Estep.cpp | 186 ++++++++++++++++++++++------------- src/Makevars | 2 src/Makevars.win | 2 src/traceLinePts.cpp | 32 +++--- tests/testthat/test-01-mirtOne.R | 12 +- tests/testthat/test-05-confmirtOne.R | 9 + tests/testthat/test-16-DCIRT.R | 2 64 files changed, 1225 insertions(+), 470 deletions(-)
Title: Convolution of Gamma Distributions
Description: Evaluation for density and distribution function of convolution of gamma
distributions in R. Two related exact methods and one approximate method are
implemented with efficient algorithm and C++ code. A quick guide for choosing
correct method and usage of this package is given in package vignette. For the
detail of methods used in this package, we refer the user to
Mathai(1982)<doi:10.1007/BF02481056>,
Moschopoulos(1984)<doi:10.1007/BF02481123>,
Barnabani(2017)<doi:10.1080/03610918.2014.963612>,
Hu et al.(2020)<doi:10.1007/s00180-019-00924-9>.
Author: Chaoran Hu [aut, cre],
Vladimir Pozdnyakov [ths],
Jun Yan [ths]
Maintainer: Chaoran Hu <huchaoran.stat@gmail.com>
Diff between coga versions 1.2.2 dated 2024-01-10 and 1.2.3 dated 2026-03-07
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 8 ++++++++ R/coga.R | 2 +- configure | 18 +++++++++--------- configure.ac | 2 +- inst/CITATION | 8 ++++---- man/coga.Rd | 2 +- src/RcppExports.cpp | 48 ++++++++++++++++++++++++------------------------ 9 files changed, 60 insertions(+), 52 deletions(-)
Title: Clinical Publication
Description: Accelerate the process from clinical data to medical publication,
including clinical data cleaning, significant result screening, and the
generation of publish-ready tables and figures.
Author: Yue Niu [aut, cre, cph] ,
Keyun Wang [aut]
Maintainer: Yue Niu <niuyuesam@163.com>
Diff between clinpubr versions 1.2.0 dated 2026-01-08 and 1.3.0 dated 2026-03-07
DESCRIPTION | 20 - MD5 | 33 +- NAMESPACE | 3 NEWS.md | 31 -- R/baseline_table.R | 15 R/data_overview.R | 12 R/data_screen.R |only R/misc.R | 179 +++++++++++ R/utils.R | 2 README.md | 51 +++ man/data_overview.Rd | 6 man/detect_outliers.Rd | 94 +++--- man/keep_by_keyword.Rd |only man/merge_by_substring.Rd | 98 +++--- man/screen_data_list.Rd |only man/to_wide.Rd |only tests/testthat/test-data_overview.R | 548 ++++++++++++++++++------------------ tests/testthat/test-data_screen.R |only tests/testthat/test-mark_outlier.R | 276 +++++++++--------- tests/testthat/test-misc.R | 105 ++++++ 20 files changed, 908 insertions(+), 565 deletions(-)
Title: A Comprehensive Interface for Accessing the Protein Data Bank
Description: Streamlines the interaction with the 'RCSB' Protein Data Bank ('PDB') <https://www.rcsb.org/>. This interface offers an intuitive and
powerful tool for searching and retrieving a diverse range of data types from the 'PDB'. It includes advanced functionalities like
BLAST and sequence motif queries. Built upon the existing XML-based API of the 'PDB', it simplifies the creation of custom requests,
thereby enhancing usability and flexibility for researchers.
Author: Selcuk Korkmaz [aut, cre] ,
Bilge Eren Yamasan [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between rPDBapi versions 2.1.2 dated 2025-10-29 and 3.0.0 dated 2026-03-06
DESCRIPTION | 18 - LICENSE |only MD5 | 133 +++++--- NAMESPACE | 30 + NEWS.md |only R/00_globals.R | 10 R/01_contracts.R |only R/99_global_variables.R |only R/add_property.R | 30 + R/analysis_helpers.R |only R/batch_cache_api.R |only R/data_fetcher.R | 60 +++ R/describe_chemical.R | 34 +- R/fetch_data.R | 52 --- R/find_papers.R | 15 R/find_results.R | 19 + R/generate_json_query.R | 3 R/get_fasta_from_rcsb_entry.R | 41 ++ R/get_info.R | 27 + R/get_pdb_file.R | 126 +++++-- R/handle_api_errors.R | 13 R/id_helpers.R |only R/internal_cache_retry.R |only R/internal_fetch.R |only R/internal_http.R |only R/internal_query.R |only R/internal_schema.R |only R/internal_search.R |only R/object_model.R |only R/parse_response.R | 15 R/perform_search.R | 114 ++---- R/query_search.R | 165 ++++------ R/return_data_as_dataframe.R | 21 - R/schema_helpers.R |only R/search_client.R | 22 - R/search_graphql.R | 22 + R/send_api_request.R | 24 - README.md | 44 ++ build |only inst/doc |only man/as_rpdb_assembly.Rd |only man/as_rpdb_chemical_component.Rd |only man/as_rpdb_entry.Rd |only man/as_rpdb_polymer_entity.Rd |only man/as_rpdb_structure.Rd |only man/build_assembly_id.Rd |only man/build_entity_id.Rd |only man/build_entry_id.Rd |only man/build_instance_id.Rd |only man/cache_info.Rd |only man/clear_rpdbapi_cache.Rd |only man/data_fetcher.Rd | 4 man/data_fetcher_batch.Rd |only man/extract_calpha_coordinates.Rd |only man/extract_ligand_table.Rd |only man/extract_taxonomy_table.Rd |only man/fetch_data.Rd | 6 man/get_pdb_file.Rd | 40 +- man/infer_id_type.Rd |only man/join_structure_sequence.Rd |only man/list_rcsb_fields.Rd |only man/parse_rcsb_id.Rd |only man/perform_search.Rd | 4 man/query_search.Rd | 5 man/search_rcsb_fields.Rd |only man/summarize_assemblies.Rd |only man/summarize_entries.Rd |only man/validate_properties.Rd |only tests/testthat/helper_live.R |only tests/testthat/test_QueryNode.R | 16 tests/testthat/test_add_property.R |only tests/testthat/test_api_contracts.R |only tests/testthat/test_citation_field_compatibility.R |only tests/testthat/test_data_fetcher.R | 18 + tests/testthat/test_fetch_data.R |only tests/testthat/test_find_results.R | 2 tests/testthat/test_get_fasta_from_rcsb_entry.R | 2 tests/testthat/test_get_info.R | 1 tests/testthat/test_get_pdb_file.R | 1 tests/testthat/test_get_pdb_file_structfact.R |only tests/testthat/test_group_query_serialization.R |only tests/testthat/test_infer_search_service.R |only tests/testthat/test_milestone1_additional_export_contracts.R |only tests/testthat/test_milestone1_backward_compatibility_exports.R |only tests/testthat/test_milestone2_internal_modules.R |only tests/testthat/test_milestone3_error_contracts.R |only tests/testthat/test_milestone4_identifier_system.R |only tests/testthat/test_milestone5_schema_layer.R |only tests/testthat/test_milestone6_batch_cache.R |only tests/testthat/test_milestone7_object_model_analysis_helpers.R |only tests/testthat/test_perform_search.R | 1 tests/testthat/test_perform_search_return_type.R |only tests/testthat/test_query_search.R | 1 tests/testthat/test_query_search_scan_params.R |only tests/testthat/test_request_encoding.R |only tests/testthat/test_return_data_as_dataframe.R |only vignettes |only 97 files changed, 765 insertions(+), 374 deletions(-)
Title: Interface to the 'PubChem' Database for Chemical Data Retrieval
Description: Provides an interface to the 'PubChem' database via the PUG REST <https://pubchem.ncbi.nlm.nih.gov/docs/pug-rest> and
PUG View <https://pubchem.ncbi.nlm.nih.gov/docs/pug-view> services. This package allows users to automatically
access chemical and biological data from 'PubChem', including compounds, substances, assays, and various other data types.
Functions are available to retrieve data in different formats, perform searches, and access detailed annotations.
Author: Selcuk Korkmaz [aut, cre] ,
Bilge Eren Yamasan [aut] ,
Dincer Goksuluk [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between PubChemR versions 2.1.8 dated 2025-12-04 and 3.0.0 dated 2026-03-06
DESCRIPTION | 26 +- MD5 | 122 +++++++--- NAMESPACE | 54 +++- R/00_globals.R | 14 + R/download.R | 19 + R/get_aids.R | 60 ---- R/get_all_sources.R | 4 R/get_assays.R | 61 ----- R/get_biological_test_results.R |only R/get_cids.R | 61 ----- R/get_compounds.R | 58 ---- R/get_json.R | 93 +++++-- R/get_properties.R | 75 +----- R/get_pubchem.R | 87 +++++-- R/get_pug_rest.R | 70 ++--- R/get_pug_view.R | 41 ++- R/get_sdf.R | 95 +++++-- R/get_sids.R | 59 ---- R/get_substances.R | 141 ----------- R/get_synonyms.R | 43 --- R/getter_functions.R | 401 +++++++++++++++++++++++++++------ R/internal_utils.R |only R/pc_api.R |only R/pc_nextgen_helpers.R |only R/pc_phase3.R |only R/pc_phase4.R |only R/printMethods.R | 26 +- R/request.R | 49 ---- inst/benchmarks |only man/AIDs-SIDs-CIDs.Rd | 7 man/download.Rd | 5 man/get_biological_test_results.Rd |only man/get_pug_view.Rd | 9 man/get_substances.Rd | 62 ----- man/has_hits.Rd |only man/instance.Rd | 8 man/pc_activity_matrix.Rd |only man/pc_activity_outcome_map.Rd |only man/pc_assay.Rd |only man/pc_assay_activity_long.Rd |only man/pc_batch.Rd |only man/pc_benchmark.Rd |only man/pc_benchmark_harness.Rd |only man/pc_cache_clear.Rd |only man/pc_cache_info.Rd |only man/pc_capabilities.Rd |only man/pc_collect.Rd |only man/pc_compound.Rd |only man/pc_config.Rd |only man/pc_cross_domain_join.Rd |only man/pc_example_assaysummary_payload.Rd |only man/pc_example_feature_table.Rd |only man/pc_export_model_data.Rd |only man/pc_feature_table.Rd |only man/pc_identifier_map.Rd |only man/pc_lifecycle_policy.Rd |only man/pc_model_matrix.Rd |only man/pc_poll.Rd |only man/pc_profile.Rd |only man/pc_property.Rd |only man/pc_request.Rd |only man/pc_response.Rd |only man/pc_resume_batch.Rd |only man/pc_sdq_bioactivity.Rd |only man/pc_similarity_search.Rd |only man/pc_submit.Rd |only man/pc_substance.Rd |only man/pc_to_chemminer.Rd |only man/pc_to_rcdk.Rd |only man/pubChemData.Rd | 6 man/request_args.Rd | 4 man/retrieve.Rd | 20 + man/section.Rd | 8 man/sectionList.Rd | 4 man/synonyms.Rd | 4 tests |only 76 files changed, 934 insertions(+), 862 deletions(-)
Title: Prediction Intervals for Synthetic Control Methods with Multiple
Treated Units and Staggered Adoption
Description: Implementation of prediction and inference procedures for Synthetic Control methods using least square, lasso, ridge, or simplex-type constraints. Uncertainty is quantified with prediction intervals as developed in Cattaneo, Feng, and Titiunik (2021) <doi:10.1080/01621459.2021.1979561> for a single treated unit and in Cattaneo, Feng, Palomba, and Titiunik (2025) <doi:10.1162/rest_a_01588> for multiple treated units and staggered adoption. More details about the software implementation can be found in Cattaneo, Feng, Palomba, and Titiunik (2025) <doi:10.18637/jss.v113.i01>.
Author: Matias Cattaneo [aut],
Yingjie Feng [aut],
Filippo Palomba [aut, cre],
Rocio Titiunik [aut]
Maintainer: Filippo Palomba <fpalomba@princeton.edu>
Diff between scpi versions 3.0.1 dated 2025-07-03 and 3.0.2 dated 2026-03-06
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 2 +- R/scest.R | 5 ++--- R/scpi-package.R | 2 +- R/scpi.R | 7 +++---- R/supporting_functions.R | 39 +++++++++++++++++++-------------------- build/partial.rdb |binary man/scest.Rd | 5 ++--- man/scpi.Rd | 5 ++--- 10 files changed, 43 insertions(+), 48 deletions(-)
Title: Weighted Iterative Proportional Fitting
Description: Implementation of the weighted iterative proportional fitting (WIPF) procedure for updating/adjusting a N-dimensional array given a weight structure and some target marginals.
Acknowledgements:
The author wish to thank Conselleria de Educación, Cultura, Universidades y Empleo (grant CIAICO/2023/031), Ministerio de Ciencia, Innovación y Universidades (grant PID2021-128228NB-I00) and Fundación Mapfre (grant 'Modelización espacial e intra-anual de la mortalidad en España. Una herramienta automática para el cálculo de productos de vida') for supporting this research.
Author: Jose M. Pavia [aut, cre]
Maintainer: Jose M. Pavia <jose.m.pavia@uv.es>
Diff between WIPF versions 0.1.0-3 dated 2026-01-07 and 0.1.0-4 dated 2026-03-06
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 9 +++++++++ R/WIPF.R | 19 +++++++++++++++---- R/WIPF1.R | 4 ++-- R/WIPF2.R | 14 ++++++++++---- R/WIPF3.R | 19 ++++++++++++++++--- man/WIPF.Rd | 8 ++++++-- man/WIPF1.Rd | 2 +- man/WIPF2.Rd | 7 +++++-- man/WIPF3.Rd | 7 +++++-- 11 files changed, 82 insertions(+), 33 deletions(-)
More information about videogameinsightsR at CRAN
Permanent link
More information about multiobjectiveMDP at CRAN
Permanent link
Title: R Bindings for the UCR Suite
Description: R bindings for functions from the UCR Suite by Rakthanmanon et al. (2012) <DOI:10.1145/2339530.2339576>, which enables ultrafast subsequence
search for a best match under Dynamic Time Warping and Euclidean Distance.
Author: Philipp Boersch-Supan [aut, cre] ,
Thanawin Rakthanmanon [aut],
Bilson Campana [aut],
Abdullah Mueen [aut],
Gustavo Batista [aut],
Eamonn Keogh [aut]
Maintainer: Philipp Boersch-Supan <pboesu@gmail.com>
Diff between rucrdtw versions 0.1.6 dated 2023-12-11 and 0.1.7 dated 2026-03-06
DESCRIPTION | 14 +++--- MD5 | 36 +++++++-------- NEWS.md | 4 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/using_rucrdtw.R | 6 +- inst/doc/using_rucrdtw.html | 15 +++--- man/rucrdtw-package.Rd | 100 ++++++++++++++++++++++---------------------- man/synthetic_control.Rd | 54 +++++++++++------------ man/ucrdtw_ff.Rd | 94 ++++++++++++++++++++--------------------- man/ucrdtw_fv.Rd | 90 +++++++++++++++++++-------------------- man/ucrdtw_mv.Rd | 96 +++++++++++++++++++++--------------------- man/ucrdtw_vv.Rd | 94 ++++++++++++++++++++--------------------- man/ucred_ff.Rd | 70 +++++++++++++++--------------- man/ucred_fv.Rd | 62 +++++++++++++-------------- man/ucred_mv.Rd | 76 ++++++++++++++++----------------- man/ucred_vv.Rd | 66 ++++++++++++++--------------- src/RcppExports.cpp | 12 ++--- src/dtw_functions.cpp | 8 --- 19 files changed, 450 insertions(+), 447 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <https://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] ,
Heidi Seibold [ctb] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-25 dated 2026-02-07 and 1.2-26 dated 2026-03-06
partykit-1.2-25/partykit/vignettes/party.bib |only partykit-1.2-26/partykit/DESCRIPTION | 10 +-- partykit-1.2-26/partykit/MD5 | 62 +++++++++++----------- partykit-1.2-26/partykit/build/partial.rdb |binary partykit-1.2-26/partykit/build/vignette.rds |binary partykit-1.2-26/partykit/inst/NEWS.Rd | 9 +++ partykit-1.2-26/partykit/inst/REFERENCES.bib |only partykit-1.2-26/partykit/inst/doc/constparty.Rnw | 2 partykit-1.2-26/partykit/inst/doc/constparty.pdf |binary partykit-1.2-26/partykit/inst/doc/ctree.Rnw | 2 partykit-1.2-26/partykit/inst/doc/ctree.pdf |binary partykit-1.2-26/partykit/inst/doc/mob.Rnw | 2 partykit-1.2-26/partykit/inst/doc/mob.pdf |binary partykit-1.2-26/partykit/inst/doc/partykit.Rnw | 2 partykit-1.2-26/partykit/inst/doc/partykit.pdf |binary partykit-1.2-26/partykit/man/HuntingSpiders.Rd | 15 +---- partykit-1.2-26/partykit/man/WeatherPlay.Rd | 8 -- partykit-1.2-26/partykit/man/cforest.Rd | 58 +++----------------- partykit-1.2-26/partykit/man/ctree.Rd | 31 ++--------- partykit-1.2-26/partykit/man/ctree_control.Rd | 17 +----- partykit-1.2-26/partykit/man/glmtree.Rd | 8 +- partykit-1.2-26/partykit/man/lmtree.Rd | 8 +- partykit-1.2-26/partykit/man/mob.Rd | 14 +--- partykit-1.2-26/partykit/man/panelfunctions.Rd | 12 +--- partykit-1.2-26/partykit/man/party-plot.Rd | 12 +--- partykit-1.2-26/partykit/man/party.Rd | 10 +-- partykit-1.2-26/partykit/man/partynode.Rd | 10 +-- partykit-1.2-26/partykit/man/partysplit.Rd | 10 +-- partykit-1.2-26/partykit/man/varimp.Rd | 21 +------ partykit-1.2-26/partykit/vignettes/constparty.Rnw | 2 partykit-1.2-26/partykit/vignettes/ctree.Rnw | 2 partykit-1.2-26/partykit/vignettes/mob.Rnw | 2 partykit-1.2-26/partykit/vignettes/partykit.Rnw | 2 33 files changed, 113 insertions(+), 218 deletions(-)
Title: Nonparametric Regression via Smoothing Splines
Description: Multiple and generalized nonparametric regression using smoothing spline ANOVA models and generalized additive models, as described in Helwig (2020) <doi:10.4135/9781526421036885885>. Includes support for Gaussian and non-Gaussian responses, smoothers for multiple types of predictors (including random intercepts), interactions between smoothers of mixed types, eight different methods for smoothing parameter selection, and flexible tools for diagnostics, inference, and prediction.
Author: Nathaniel E. Helwig [aut, cre]
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between npreg versions 1.1.0 dated 2024-03-29 and 1.1.1 dated 2026-03-06
ChangeLog | 11 +++++++++++ DESCRIPTION | 13 +++++++------ MD5 | 13 +++++++------ NAMESPACE | 3 +++ R/dffits.R |only R/fit_gsm.R | 6 +++--- build/partial.rdb |binary man/smooth.influence.measures.Rd | 7 +++++++ 8 files changed, 38 insertions(+), 15 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020)
<DOI:10.18637/jss.v092.i01>. Shift-scale (Siegfried et al, 2023, <DOI:10.1080/00031305.2023.2203177>)
and multivariate (Klein et al, 2022, <DOI:10.1111/sjos.12501>) transformation models
are part of this package. A package vignette is available from <DOI:10.32614/CRAN.package.mlt.docreg> and
more convenient user interfaces to many models from <DOI:10.32614/CRAN.package.tram>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.7-3 dated 2025-12-12 and 1.7-4 dated 2026-03-06
DESCRIPTION | 10 +++++----- MD5 | 23 ++++++++++++----------- R/mlt.R | 1 + R/mmlt.R | 50 ++++++++++++++++++++++++++++---------------------- build/partial.rdb |binary inst/NEWS.Rd | 16 ++++++++++++++++ inst/REFERENCES.bib |only man/R.Rd | 11 ++--------- man/ctm.Rd | 16 +++------------- man/mlt-package.Rd | 32 +++++--------------------------- man/mlt.Rd | 22 +++++----------------- man/mmlt.Rd | 22 ++++++++++++---------- man/predict.Rd | 11 ++--------- 13 files changed, 91 insertions(+), 123 deletions(-)
Title: Generating Cluster Masks for Single-Cell Dimensional Reduction
Plots
Description: Implements a procedure to automatically generate 2D masks
for clusters on dimensional reduction plots from methods like
t-SNE (t-distributed stochastic neighbor embedding) or
UMAP (uniform manifold approximation and projection),
with a focus on single-cell RNA-sequencing data.
Author: Alexey Sergushichev [aut, cre]
Maintainer: Alexey Sergushichev <alsergbox@gmail.com>
Diff between mascarade versions 0.3.1 dated 2026-02-13 and 0.3.2 dated 2026-03-06
DESCRIPTION | 6 MD5 | 17 - NEWS.md | 3 R/fancyMask.R | 8 R/generateMask.R | 3 build/vignette.rds |binary inst/doc/mascarade-gallery.html | 296 +++++++++++++------------- inst/doc/mascarade-tutorial.html | 441 +++++++++++++++++++-------------------- tests/testthat/test-emptyMask.R |only tests/testthat/test-fancyMask.R | 27 ++ 10 files changed, 419 insertions(+), 382 deletions(-)
Title: Linear Test Statistics for Permutation Inference
Description: Basic infrastructure for linear test statistics and permutation
inference in the framework of Strasser and Weber (1999) <https://epub.wu.ac.at/102/>.
This package must not be used by end-users. CRAN package 'coin' implements all
user interfaces and is ready to be used by anyone.
Author: Torsten Hothorn [aut, cre] ,
Henric Winell [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between libcoin versions 1.0-10 dated 2023-09-27 and 1.0-11 dated 2026-03-06
libcoin-1.0-10/libcoin/inst/nuweb/libcoin.bib |only libcoin-1.0-10/libcoin/vignettes/libcoin.bib |only libcoin-1.0-11/libcoin/DESCRIPTION | 15 +- libcoin-1.0-11/libcoin/MD5 | 22 ++-- libcoin-1.0-11/libcoin/build/partial.rdb |only libcoin-1.0-11/libcoin/build/vignette.rds |binary libcoin-1.0-11/libcoin/cleanup | 28 +++++ libcoin-1.0-11/libcoin/inst/NEWS.Rd | 7 + libcoin-1.0-11/libcoin/inst/REFERENCES.bib |only libcoin-1.0-11/libcoin/inst/doc/libcoin.Rnw | 137 +++++++++++++------------- libcoin-1.0-11/libcoin/inst/doc/libcoin.pdf |binary libcoin-1.0-11/libcoin/inst/nuweb/libcoin.w | 26 +++- libcoin-1.0-11/libcoin/man/LinStatExpCov.Rd | 11 +- libcoin-1.0-11/libcoin/vignettes/libcoin.Rnw | 137 +++++++++++++------------- 14 files changed, 217 insertions(+), 166 deletions(-)
Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between basefun versions 1.2-5 dated 2025-10-05 and 1.2-6 dated 2026-03-06
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++-------- build/partial.rdb |binary inst/NEWS.Rd | 7 +++++++ inst/REFERENCES.bib |only man/Bernstein_basis.Rd | 10 ++-------- man/Legendre_basis.Rd | 9 ++------- man/basefun-package.Rd | 17 +++++------------ man/cyclic_basis.Rd | 10 ++-------- man/predict.Rd | 11 ++--------- 10 files changed, 34 insertions(+), 57 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate, ?modify, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 1.3.2 dated 2026-01-16 and 1.3.3 dated 2026-03-06
DESCRIPTION | 6 - MD5 | 24 +++--- R/singularity.R | 9 ++ R/yamlet.R | 2 inst/doc/aesthetics.html | 6 - inst/doc/scripted-html.html | 4 - inst/doc/scripted-pdf.pdf |binary inst/doc/yamlet-introduction.html | 4 - man/unnest.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test-yamlet.R | 37 +++++++++- vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-4-1.pdf |binary vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-5-1.pdf |binary 13 files changed, 68 insertions(+), 26 deletions(-)
Title: Nested Dichotomy Logistic Regression Models
Description: Provides functions for specifying and fitting nested
dichotomy logistic regression models for a multi-category response and
methods for summarising and plotting those models. Nested dichotomies are
statistically independent, and hence provide an additive decomposition
of tests for the overall 'polytomous' response. When the dichotomies
make sense substantively, this method can be a simpler alternative to
the standard 'multinomial' logistic model which compares response
categories to a reference level. See: J. Fox (2016), "Applied
Regression Analysis and Generalized Linear Models", 3rd Ed., ISBN
1452205663.
Author: John Fox [aut] ,
Michael Friendly [aut, cre] ,
Achim Zeileis [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between nestedLogit versions 0.3.4 dated 2026-02-01 and 0.4.0 dated 2026-03-06
nestedLogit-0.3.4/nestedLogit/vignettes/fig |only nestedLogit-0.4.0/nestedLogit/DESCRIPTION | 16 nestedLogit-0.4.0/nestedLogit/MD5 | 77 nestedLogit-0.4.0/nestedLogit/NAMESPACE | 6 nestedLogit-0.4.0/nestedLogit/NEWS.md | 22 nestedLogit-0.4.0/nestedLogit/R/GSS.R | 14 nestedLogit-0.4.0/nestedLogit/R/as.tree.R |only nestedLogit-0.4.0/nestedLogit/R/gators.R |only nestedLogit-0.4.0/nestedLogit/R/nestedHypotheses.R | 394 ++-- nestedLogit-0.4.0/nestedLogit/R/nestedMethods.R | 818 +++------- nestedLogit-0.4.0/nestedLogit/R/plot.nested-ci.R | 187 +- nestedLogit-0.4.0/nestedLogit/R/predict.nestedLogit.R |only nestedLogit-0.4.0/nestedLogit/build/vignette.rds |binary nestedLogit-0.4.0/nestedLogit/data/GSS.RData |binary nestedLogit-0.4.0/nestedLogit/data/gators.RData |only nestedLogit-0.4.0/nestedLogit/inst/WORDLIST | 21 nestedLogit-0.4.0/nestedLogit/inst/doc/ggeffects.R |only nestedLogit-0.4.0/nestedLogit/inst/doc/ggeffects.Rmd |only nestedLogit-0.4.0/nestedLogit/inst/doc/ggeffects.html |only nestedLogit-0.4.0/nestedLogit/inst/doc/nestedLogit.html | 32 nestedLogit-0.4.0/nestedLogit/inst/doc/other-examples.R |only nestedLogit-0.4.0/nestedLogit/inst/doc/other-examples.Rmd |only nestedLogit-0.4.0/nestedLogit/inst/doc/other-examples.html |only nestedLogit-0.4.0/nestedLogit/inst/doc/plotting-ggplot.html | 28 nestedLogit-0.4.0/nestedLogit/man/GSS.Rd | 96 - nestedLogit-0.4.0/nestedLogit/man/as.tree.Rd |only nestedLogit-0.4.0/nestedLogit/man/figures/fishing-trees.png |only nestedLogit-0.4.0/nestedLogit/man/figures/nested.jpg |only nestedLogit-0.4.0/nestedLogit/man/gators.Rd |only nestedLogit-0.4.0/nestedLogit/man/models.Rd | 18 nestedLogit-0.4.0/nestedLogit/man/nestedHypotheses.Rd | 180 +- nestedLogit-0.4.0/nestedLogit/man/nestedMethods.Rd | 316 +-- nestedLogit-0.4.0/nestedLogit/man/plot.nestedLogit.Rd | 68 nestedLogit-0.4.0/nestedLogit/man/predict.nestedLogit.Rd |only nestedLogit-0.4.0/nestedLogit/tests/testthat/test-fitted-probs.R | 62 nestedLogit-0.4.0/nestedLogit/tests/testthat/test-probs-SEs.R | 84 - nestedLogit-0.4.0/nestedLogit/vignettes/ggeffects.Rmd |only nestedLogit-0.4.0/nestedLogit/vignettes/other-examples.Rmd |only nestedLogit-0.4.0/nestedLogit/vignettes/references.bib | 57 39 files changed, 1256 insertions(+), 1240 deletions(-)
Title: Bayesian Methods for Change Point Analysis
Description: Performs change point detection on univariate and multivariate time series (Martínez & Mena, 2014, <doi:10.1214/14-BA878> ; Corradin, Danese & Ongaro, 2022, <doi:10.1016/j.ijar.2021.12.019>) and clusters time-dependent data with common change points (Corradin, Danese, KhudaBukhsh & Ongaro, 2026, <doi:10.1007/s11222-025-10756-x>).
Author: Luca Danese [aut, cre, cph] ,
Riccardo Corradin [aut],
Andrea Ongaro [aut]
Maintainer: Luca Danese <l.danese1@campus.unimib.it>
Diff between BayesChange versions 2.2.0 dated 2026-01-14 and 2.3.0 dated 2026-03-06
DESCRIPTION | 6 - MD5 | 22 ++-- NEWS.md | 13 -- R/ClustCpObj.R | 12 +- R/DetectCpObj.R | 47 +++++++-- inst/doc/tutorial.html | 176 +++++++++++++++++----------------- man/plot.DetectCpObj.Rd | 10 - man/posterior_estimate.ClustCpObj.Rd | 8 - man/posterior_estimate.DetectCpObj.Rd | 11 +- man/print.ClustCpObj.Rd | 2 man/summary.ClustCpObj.Rd | 2 man/summary.DetectCpObj.Rd | 2 12 files changed, 169 insertions(+), 142 deletions(-)
Title: Descriptive, Reliability, and Inferential Tables for
Psychometric Scales and Demographic Data
Description: Provides functions to format and summarise already computed outputs from commonly used statistical and psychometric functions into compact, single-row tables and simple graphs, with utilities to export results to CSV, Word, and Excel formats. The package does not implement new statistical methods or estimation procedures; instead, it organises and presents results obtained from existing functions such as psych::describe(), psych::alpha(), stats::t.test(), and gtsummary::tbl_summary() to streamline reporting workflows in clinical and psychological research.
Author: Darshankumar Dharaiya [aut, cre]
Maintainer: Darshankumar Dharaiya <dharaiya.darshan@gmail.com>
Diff between scaledescr versions 0.2.0 dated 2026-02-11 and 0.2.1 dated 2026-03-06
DESCRIPTION | 6 - MD5 | 17 +-- NEWS.md |only R/make_dataframe_to_output.R | 158 ++++++++++++++++++++++------------- inst/CITATION | 2 man/make_alpha_table.Rd | 2 man/make_chisq_test_table.Rd | 17 +-- man/make_dataframe_to_output.Rd | 109 +++++++++++++++++------- man/make_independent_t_test_table.Rd | 19 ++-- man/make_paired_t_test_table.Rd | 26 ++--- 10 files changed, 227 insertions(+), 129 deletions(-)
Title: Inference on Predicted Data
Description: Performs valid statistical inference on predicted data (IPD) using recent methods, where for a subset of the data, the outcomes have been predicted by an algorithm. Provides a wrapper function with specified defaults for the type of model and method to be used for estimation and inference. Further provides methods for tidying and summarizing results. Salerno et al., (2025) <doi:10.1093/bioinformatics/btaf055>.
Author: Stephen Salerno [aut, cre, cph] ,
Jiacheng Miao [aut],
Awan Afiaz [aut],
Kentaro Hoffman [aut],
Jesse Gronsbell [aut],
Jianhui Gao [aut],
David Cheng [aut],
Anna Neufeld [aut],
Qiongshi Lu [aut],
Tyler H McCormick [aut],
Jeffrey T Leek [aut]
Maintainer: Stephen Salerno <ssalerno@fredhutch.org>
Diff between ipd versions 0.1.4 dated 2025-01-07 and 0.4.0 dated 2026-03-06
ipd-0.1.4/ipd/R/helpers.R |only ipd-0.1.4/ipd/man/figures |only ipd-0.4.0/ipd/DESCRIPTION | 34 ipd-0.4.0/ipd/MD5 | 202 +- ipd-0.4.0/ipd/NAMESPACE | 39 ipd-0.4.0/ipd/NEWS.md | 116 + ipd-0.4.0/ipd/R/chen_logistic.R |only ipd-0.4.0/ipd/R/chen_ols.R |only ipd-0.4.0/ipd/R/chen_poisson.R |only ipd-0.4.0/ipd/R/ipd-package.R | 75 ipd-0.4.0/ipd/R/ipd.R | 493 +---- ipd-0.4.0/ipd/R/methods.R | 690 +++---- ipd-0.4.0/ipd/R/pdc_logistic.R |only ipd-0.4.0/ipd/R/pdc_ols.R |only ipd-0.4.0/ipd/R/pdc_poisson.R |only ipd-0.4.0/ipd/R/postpi_analytic_ols.R | 107 - ipd-0.4.0/ipd/R/postpi_boot_logistic.R | 110 - ipd-0.4.0/ipd/R/postpi_boot_ols.R | 201 +- ipd-0.4.0/ipd/R/ppi_a_ols.R |only ipd-0.4.0/ipd/R/ppi_logistic.R | 74 ipd-0.4.0/ipd/R/ppi_mean.R | 43 ipd-0.4.0/ipd/R/ppi_ols.R | 103 - ipd-0.4.0/ipd/R/ppi_plusplus_logistic.R | 216 +- ipd-0.4.0/ipd/R/ppi_plusplus_mean.R | 148 - ipd-0.4.0/ipd/R/ppi_plusplus_ols.R | 174 - ipd-0.4.0/ipd/R/ppi_plusplus_quantile.R | 130 - ipd-0.4.0/ipd/R/ppi_quantile.R | 71 ipd-0.4.0/ipd/R/pspa_logistic.R | 48 ipd-0.4.0/ipd/R/pspa_mean.R | 40 ipd-0.4.0/ipd/R/pspa_ols.R | 48 ipd-0.4.0/ipd/R/pspa_poisson.R | 48 ipd-0.4.0/ipd/R/pspa_quantile.R | 45 ipd-0.4.0/ipd/R/simdat.R | 702 +++---- ipd-0.4.0/ipd/R/utils_chen.R |only ipd-0.4.0/ipd/R/utils_ipd.R |only ipd-0.4.0/ipd/R/utils_ppi.R |only ipd-0.4.0/ipd/R/utils_pspa.R |only ipd-0.4.0/ipd/README.md | 478 +++- ipd-0.4.0/ipd/build/partial.rdb |binary ipd-0.4.0/ipd/build/vignette.rds |binary ipd-0.4.0/ipd/inst/CITATION |only ipd-0.4.0/ipd/inst/doc/ipd.R | 386 ++- ipd-0.4.0/ipd/inst/doc/ipd.Rmd | 609 +++--- ipd-0.4.0/ipd/inst/doc/ipd.html | 2457 +++++++++++++++---------- ipd-0.4.0/ipd/inst/paper.R | 1248 ++++++------ ipd-0.4.0/ipd/man/A.Rd | 10 ipd-0.4.0/ipd/man/Sigma_cal.Rd | 24 ipd-0.4.0/ipd/man/augment.ipd.Rd | 33 ipd-0.4.0/ipd/man/calc_lhat_glm.Rd | 27 ipd-0.4.0/ipd/man/chen_logistic.Rd |only ipd-0.4.0/ipd/man/chen_ols.Rd |only ipd-0.4.0/ipd/man/chen_poisson.Rd |only ipd-0.4.0/ipd/man/compute_cdf.Rd | 11 ipd-0.4.0/ipd/man/compute_cdf_diff.Rd | 13 ipd-0.4.0/ipd/man/dot-build_design.Rd |only ipd-0.4.0/ipd/man/dot-drop_unused_levels.Rd |only ipd-0.4.0/ipd/man/dot-parse_inputs.Rd |only ipd-0.4.0/ipd/man/dot-warn_differing_levels.Rd |only ipd-0.4.0/ipd/man/est_ini.Rd | 11 ipd-0.4.0/ipd/man/glance.ipd.Rd | 26 ipd-0.4.0/ipd/man/ipd-class.Rd |only ipd-0.4.0/ipd/man/ipd-package.Rd | 80 ipd-0.4.0/ipd/man/ipd.Rd | 130 - ipd-0.4.0/ipd/man/link_Hessian.Rd | 4 ipd-0.4.0/ipd/man/link_grad.Rd | 4 ipd-0.4.0/ipd/man/log1pexp.Rd | 45 ipd-0.4.0/ipd/man/logistic_get_stats.Rd | 23 ipd-0.4.0/ipd/man/mean_psi.Rd | 10 ipd-0.4.0/ipd/man/mean_psi_pop.Rd | 24 ipd-0.4.0/ipd/man/ols.Rd | 13 ipd-0.4.0/ipd/man/ols_get_stats.Rd | 23 ipd-0.4.0/ipd/man/optim_est.Rd | 24 ipd-0.4.0/ipd/man/optim_weights.Rd | 25 ipd-0.4.0/ipd/man/pdc_logistic.Rd |only ipd-0.4.0/ipd/man/pdc_ols.Rd |only ipd-0.4.0/ipd/man/pdc_poisson.Rd |only ipd-0.4.0/ipd/man/postpi_analytic_ols.Rd | 26 ipd-0.4.0/ipd/man/postpi_boot_logistic.Rd | 127 - ipd-0.4.0/ipd/man/postpi_boot_ols.Rd | 24 ipd-0.4.0/ipd/man/ppi_a_ols.Rd |only ipd-0.4.0/ipd/man/ppi_logistic.Rd | 146 - ipd-0.4.0/ipd/man/ppi_mean.Rd | 97 ipd-0.4.0/ipd/man/ppi_ols.Rd | 18 ipd-0.4.0/ipd/man/ppi_plusplus_logistic.Rd | 202 +- ipd-0.4.0/ipd/man/ppi_plusplus_logistic_est.Rd | 164 - ipd-0.4.0/ipd/man/ppi_plusplus_mean.Rd | 152 - ipd-0.4.0/ipd/man/ppi_plusplus_mean_est.Rd | 134 - ipd-0.4.0/ipd/man/ppi_plusplus_ols.Rd | 194 + ipd-0.4.0/ipd/man/ppi_plusplus_ols_est.Rd | 156 - ipd-0.4.0/ipd/man/ppi_plusplus_quantile.Rd | 136 - ipd-0.4.0/ipd/man/ppi_plusplus_quantile_est.Rd | 126 - ipd-0.4.0/ipd/man/ppi_quantile.Rd | 106 - ipd-0.4.0/ipd/man/print.ipd.Rd | 31 ipd-0.4.0/ipd/man/print.summary.ipd.Rd | 33 ipd-0.4.0/ipd/man/psi.Rd | 12 ipd-0.4.0/ipd/man/pspa_logistic.Rd | 15 ipd-0.4.0/ipd/man/pspa_mean.Rd | 13 ipd-0.4.0/ipd/man/pspa_ols.Rd | 15 ipd-0.4.0/ipd/man/pspa_poisson.Rd | 15 ipd-0.4.0/ipd/man/pspa_quantile.Rd | 11 ipd-0.4.0/ipd/man/pspa_y.Rd | 43 ipd-0.4.0/ipd/man/rectified_cdf.Rd | 15 ipd-0.4.0/ipd/man/rectified_p_value.Rd | 15 ipd-0.4.0/ipd/man/reexports.Rd | 84 ipd-0.4.0/ipd/man/show-ipd-method.Rd |only ipd-0.4.0/ipd/man/sim_data_y.Rd | 2 ipd-0.4.0/ipd/man/simdat.Rd | 49 ipd-0.4.0/ipd/man/summary.ipd.Rd | 45 ipd-0.4.0/ipd/man/tidy.ipd.Rd | 27 ipd-0.4.0/ipd/man/wls.Rd | 15 ipd-0.4.0/ipd/man/zconfint_generic.Rd | 13 ipd-0.4.0/ipd/man/zstat_generic.Rd | 77 ipd-0.4.0/ipd/tests/spelling.R | 9 ipd-0.4.0/ipd/vignettes/ipd.Rmd | 609 +++--- ipd-0.4.0/ipd/vignettes/ipd.md |only 115 files changed, 6797 insertions(+), 5854 deletions(-)
Title: Robust Probabilistic Matching for German Company Names
Description: A pipeline for matching messy company name strings against a clean dictionary (e.g., 'Orbis').
Implements a cascading strategy: Exact -> Fuzzy ('zoomerjoin') -> 'FTS5' ('SQLite') -> Rarity Weighted.
References: Beniamino Green (2025) <https://beniamino.org/zoomerjoin/>; <https://www.sqlite.org/fts5.html>.
Author: Giulian Etingin-Frati [aut, cre]
Maintainer: Giulian Etingin-Frati <etingin-frati@kof.ethz.ch>
Diff between firmmatchr versions 0.1.2 dated 2026-02-11 and 0.1.3 dated 2026-03-06
DESCRIPTION | 8 LICENSE | 4 MD5 | 39 ++-- NAMESPACE | 70 +++---- NEWS.md | 51 +++-- R/engines.R | 342 +++++++++++++++++++------------------- R/globals.R | 18 +- R/llm_api.R | 343 +++++++++++++++++++++++++------------- R/llm_pipeline.R | 353 +++++++++++++++++++++------------------- R/match_pipeline.R | 346 +++++++++++++++++++-------------------- R/normalize.R | 132 +++++++------- README.md | 282 +++++++++++++++---------------- inst/WORDLIST | 6 man/azure_chat_request.Rd | 70 +++---- man/match_companies.Rd | 146 ++++++++-------- man/normalize_company_name.Rd | 54 +++--- man/openai_chat_request.Rd |only man/validate_matches_llm.Rd | 131 +++++++------- tests/testthat.R | 8 tests/testthat/test-match.R | 68 +++---- tests/testthat/test-normalize.R | 30 +-- 21 files changed, 1325 insertions(+), 1176 deletions(-)
Title: Primary Event Censored Distributions
Description: Provides functions for working with primary
event censored distributions and 'Stan' implementations for use in Bayesian
modeling. Primary event censored distributions are useful for modeling
delayed reporting scenarios in epidemiology and other fields (Charniga et
al. (2024) <doi:10.48550/arXiv.2405.08841>). It also provides support for
arbitrary delay distributions, a range of common primary distributions, and
allows for truncation and secondary event censoring to be accounted for
(Park et al. (2024) <doi:10.1101/2024.01.12.24301247>). A subset of
common distributions also have analytical solutions implemented, allowing
for faster computation. In addition, it provides multiple methods for
fitting primary event censored distributions to data via optional
dependencies.
Author: Sam Abbott [aut, cre, cph] ,
Sam Brand [aut] ,
Adam Howes [ctb] ,
James Mba Azam [aut] ,
Carl Pearson [aut] ,
Sebastian Funk [aut] ,
Kelly Charniga [aut]
Maintainer: Sam Abbott <contact@samabbott.co.uk>
Diff between primarycensored versions 1.3.0 dated 2025-12-01 and 1.4.0 dated 2026-03-06
primarycensored-1.3.0/primarycensored/man/dot-name_deprecation.Rd |only primarycensored-1.4.0/primarycensored/DESCRIPTION | 10 primarycensored-1.4.0/primarycensored/MD5 | 133 ++-- primarycensored-1.4.0/primarycensored/NAMESPACE | 2 primarycensored-1.4.0/primarycensored/NEWS.md | 29 primarycensored-1.4.0/primarycensored/R/check.R | 49 + primarycensored-1.4.0/primarycensored/R/dprimarycensored.R | 104 ++- primarycensored-1.4.0/primarycensored/R/fitdistdoublecens.R | 106 +-- primarycensored-1.4.0/primarycensored/R/pcd-stan-tools.R | 169 +++++ primarycensored-1.4.0/primarycensored/R/pcd_cmdstan_model.R | 19 primarycensored-1.4.0/primarycensored/R/pcens.R | 10 primarycensored-1.4.0/primarycensored/R/pcens_quantile.R | 17 primarycensored-1.4.0/primarycensored/R/pprimarycensored.R | 103 ++- primarycensored-1.4.0/primarycensored/R/primarycensored-package.R | 5 primarycensored-1.4.0/primarycensored/R/qprimarycensored.R | 18 primarycensored-1.4.0/primarycensored/R/rprimarycensored.R | 55 + primarycensored-1.4.0/primarycensored/R/utils.R | 41 - primarycensored-1.4.0/primarycensored/README.md | 6 primarycensored-1.4.0/primarycensored/build/vignette.rds |binary primarycensored-1.4.0/primarycensored/data/pcd_distributions.rda |binary primarycensored-1.4.0/primarycensored/inst/WORDLIST | 7 primarycensored-1.4.0/primarycensored/inst/doc/analytic-solutions.Rmd | 2 primarycensored-1.4.0/primarycensored/inst/doc/analytic-solutions.html | 8 primarycensored-1.4.0/primarycensored/inst/doc/primarycensored.Rmd | 14 primarycensored-1.4.0/primarycensored/inst/doc/primarycensored.html | 31 - primarycensored-1.4.0/primarycensored/inst/doc/why-it-works.Rmd | 2 primarycensored-1.4.0/primarycensored/inst/doc/why-it-works.html | 10 primarycensored-1.4.0/primarycensored/inst/stan/functions/expgrowth.stan | 61 +- primarycensored-1.4.0/primarycensored/inst/stan/functions/primarycensored.stan | 293 +++++++--- primarycensored-1.4.0/primarycensored/inst/stan/functions/primarycensored_analytical_cdf.stan | 82 +- primarycensored-1.4.0/primarycensored/inst/stan/functions/primarycensored_ode.stan | 63 +- primarycensored-1.4.0/primarycensored/inst/stan/pcens_model.stan | 14 primarycensored-1.4.0/primarycensored/man/check_pdist.Rd | 7 primarycensored-1.4.0/primarycensored/man/dot-check_truncation_bounds.Rd |only primarycensored-1.4.0/primarycensored/man/dot-check_truncation_bounds_df.Rd |only primarycensored-1.4.0/primarycensored/man/dot-dpcens.Rd | 6 primarycensored-1.4.0/primarycensored/man/dot-normalise_cdf.Rd | 10 primarycensored-1.4.0/primarycensored/man/dprimarycensored.Rd | 53 - primarycensored-1.4.0/primarycensored/man/fitdistdoublecens.Rd | 22 primarycensored-1.4.0/primarycensored/man/new_pcens.Rd | 17 primarycensored-1.4.0/primarycensored/man/pcd_as_stan_data.Rd | 10 primarycensored-1.4.0/primarycensored/man/pcd_load_stan_functions.Rd | 9 primarycensored-1.4.0/primarycensored/man/pcd_stan_dist_id.Rd | 1 primarycensored-1.4.0/primarycensored/man/pcd_stan_files.Rd | 1 primarycensored-1.4.0/primarycensored/man/pcd_stan_function_deps.Rd |only primarycensored-1.4.0/primarycensored/man/pcd_stan_functions.Rd | 1 primarycensored-1.4.0/primarycensored/man/pcd_stan_path.Rd | 1 primarycensored-1.4.0/primarycensored/man/pcens_quantile.Rd | 12 primarycensored-1.4.0/primarycensored/man/pcens_quantile.default.Rd | 14 primarycensored-1.4.0/primarycensored/man/pprimarycensored.Rd | 52 - primarycensored-1.4.0/primarycensored/man/qprimarycensored.Rd | 23 primarycensored-1.4.0/primarycensored/man/rprimarycensored.Rd | 35 - primarycensored-1.4.0/primarycensored/tests/testthat/Rplots.pdf |binary primarycensored-1.4.0/primarycensored/tests/testthat/test-dprimarycensored.R | 175 +++++ primarycensored-1.4.0/primarycensored/tests/testthat/test-expgrowth.R | 68 ++ primarycensored-1.4.0/primarycensored/tests/testthat/test-fitdistdoublecens.R | 178 ++---- primarycensored-1.4.0/primarycensored/tests/testthat/test-pcd-stan-tools.R | 92 +++ primarycensored-1.4.0/primarycensored/tests/testthat/test-pcens_cdf.R | 56 - primarycensored-1.4.0/primarycensored/tests/testthat/test-pprimarycensored.R | 110 +++ primarycensored-1.4.0/primarycensored/tests/testthat/test-qprimarycensored.R | 60 ++ primarycensored-1.4.0/primarycensored/tests/testthat/test-rpd-primarycensored.R | 100 +++ primarycensored-1.4.0/primarycensored/tests/testthat/test-rprimarycensored.R | 66 ++ primarycensored-1.4.0/primarycensored/tests/testthat/test-stan-dist_lcdf.R |only primarycensored-1.4.0/primarycensored/tests/testthat/test-stan-expgrowth.R | 48 + primarycensored-1.4.0/primarycensored/tests/testthat/test-stan-primarycensored_analytical_cdf.R | 6 primarycensored-1.4.0/primarycensored/tests/testthat/test-stan-primarycensored_ode.R | 6 primarycensored-1.4.0/primarycensored/tests/testthat/test-stan-rpd-primarycensored.R | 162 +++++ primarycensored-1.4.0/primarycensored/vignettes/analytic-solutions.Rmd | 2 primarycensored-1.4.0/primarycensored/vignettes/primarycensored.Rmd | 14 primarycensored-1.4.0/primarycensored/vignettes/why-it-works.Rmd | 2 70 files changed, 2093 insertions(+), 789 deletions(-)
More information about primarycensored at CRAN
Permanent link
Title: Efficient Computation of Ordinary and Generalised Poisson
Binomial Distributions
Description: Efficient implementations of multiple exact and approximate methods
as described in Hong (2013) <doi:10.1016/j.csda.2012.10.006>, Biscarri, Zhao &
Brunner (2018) <doi:10.1016/j.csda.2018.01.007> and Zhang, Hong & Balakrishnan
(2018) <doi:10.1080/00949655.2018.1440294> for computing the probability mass,
cumulative distribution and quantile functions, as well as generating random
numbers for both the ordinary and generalised Poisson binomial distribution.
Author: Florian Junge [aut, cre]
Maintainer: Florian Junge <florian.junge@mailbox.org>
Diff between PoissonBinomial versions 1.2.7 dated 2024-09-17 and 1.2.8 dated 2026-03-06
DESCRIPTION | 31 MD5 | 48 NEWS.md | 12 R/PoissonBinomial.R | 90 - R/gpbinom.R | 412 +++-- R/pbinom.R | 526 +++--- R/utility.R | 47 build/partial.rdb |binary build/vignette.rds |binary inst/doc/intro.R | 176 +- inst/doc/intro.html | 1681 ++++++++++----------- inst/doc/proc_approx.R | 584 +++---- inst/doc/proc_approx.Rmd | 776 +++++----- inst/doc/proc_approx.html | 2529 ++++++++++++++++----------------- inst/doc/proc_exact.R | 284 +-- inst/doc/proc_exact.Rmd | 452 ++--- inst/doc/proc_exact.html | 1997 +++++++++++++------------- inst/doc/use_with_rcpp.R | 12 inst/doc/use_with_rcpp.html | 934 ++++++------ man/GenPoissonBinomial-Distribution.Rd | 40 man/PoissonBinomial-Distribution.Rd | 22 man/PoissonBinomial-package.Rd | 25 src/RcppExports.cpp | 54 vignettes/proc_approx.Rmd | 776 +++++----- vignettes/proc_exact.Rmd | 452 ++--- 25 files changed, 6063 insertions(+), 5897 deletions(-)
More information about PoissonBinomial at CRAN
Permanent link
Title: Quick Indexation
Description: Quick indexation of any type of vector or of any combination of those. Indexation turns a vector into an integer vector going from 1 to the number of unique elements. Indexes are important building blocks for many algorithms. The method is described at <https://github.com/lrberge/indexthis/>.
Author: Laurent Berge [aut, cre],
Sebastian Krantz [ctb],
Morgan Jacob [ctb]
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between indexthis versions 2.1.0 dated 2025-04-18 and 2.2.0 dated 2026-03-06
DESCRIPTION | 6 +- MD5 | 14 ++--- NEWS.md | 5 ++ R/to_index.R | 6 ++ README.md | 4 - inst/vendor/to_index.R | 5 +- inst/vendor/to_index.cpp | 87 +++++++++++++++++++++++-------------- src/to_index.cpp | 110 ++++++++++++++++++++++++++++++----------------- 8 files changed, 155 insertions(+), 82 deletions(-)
Title: Extension to 'ggplot2' for Plotting Stats
Description: Provides new statistics, new geometries and new positions for
'ggplot2' and a suite of functions to facilitate the creation of
statistical plots.
Author: Joseph Larmarange [aut, cre]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between ggstats versions 0.12.0 dated 2025-12-22 and 0.13.0 dated 2026-03-06
DESCRIPTION | 6 - MD5 | 26 +++--- NAMESPACE | 1 NEWS.md | 12 ++ R/ggcoef_model.R | 16 ++- R/gglikert.R | 176 ++++++++++++++++++++++++++++++++++++++++- R/position_likert.R | 2 README.md | 20 ++-- inst/doc/gglikert.R | 14 +++ inst/doc/gglikert.Rmd | 23 ++++- inst/doc/gglikert.html | 156 +++++++++++++++++++----------------- man/gglikert.Rd | 61 +++++++++++++- tests/testthat/test-gglikert.R | 78 ++++++++++++++++++ vignettes/gglikert.Rmd | 23 ++++- 14 files changed, 498 insertions(+), 116 deletions(-)
Title: Diagnosis Performance Using Attributable Fraction
Description: Estimate diagnosis performance (Sensitivity, Specificity,
Positive predictive value, Negative predicted value) of a diagnostic test
where can not measure the golden standard but can estimate it using the
attributable fraction.
Author: John J. Aponte [aut, cre] ,
Orvalho Augusto [aut]
Maintainer: John J. Aponte <john.j.aponte@gmail.com>
Diff between afdx versions 1.1.1 dated 2021-05-25 and 1.1.2 dated 2026-03-06
DESCRIPTION | 15 MD5 | 27 - NEWS.md | 46 + README.md | 4 build/vignette.rds |binary inst/WORDLIST | 6 inst/doc/af_logit_exponential.R | 6 inst/doc/af_logit_exponential.Rmd | 2 inst/doc/af_logit_exponential.html | 767 +++++++++++++++++++++++++------ inst/doc/latentclass.R | 68 +- inst/doc/latentclass.Rmd | 8 inst/doc/latentclass.html | 899 ++++++++++++++++++++++++++++--------- man/figures |only vignettes/af_logit_exponential.Rmd | 2 vignettes/latentclass.Rmd | 8 15 files changed, 1422 insertions(+), 436 deletions(-)
Title: Tests Based on Ordinal Patterns
Description: Ordinal patterns describe the dynamics of a time series by looking at the ranks of subsequent observations. By comparing ordinal patterns of two times series, Schnurr (2014) <doi:10.1007/s00362-013-0536-8> defines a robust and non-parametric dependence measure: the ordinal pattern coefficient. Functions to calculate this and a method to detect a change in the pattern coefficient proposed in Schnurr and Dehling (2017) <doi:10.1080/01621459.2016.1164706> are provided. Furthermore, the package contains a function for calculating the ordinal pattern frequencies. Generalized ordinal patterns as proposed by Schnurr and Fischer (2022) <doi:10.1016/j.csda.2022.107472> are also considered.
Author: Alexander Duerre [aut],
Svenja Fischer [ctb],
Alexander Schnurr [aut],
Angelika Silbernagel [aut, cre]
Maintainer: Angelika Silbernagel <silbernagel@hsu-hh.de>
Diff between ordinalpattern versions 0.2.7 dated 2025-05-12 and 0.2.8 dated 2026-03-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/Pattern.R | 5 +++-- 3 files changed, 9 insertions(+), 8 deletions(-)
More information about ordinalpattern at CRAN
Permanent link
Title: Distributed Laplace Factor Model
Description: Distributed estimation method is based on a Laplace factor model
to solve the estimates of load and specific variance. The philosophy of
the package is described in Guangbao Guo. (2022).
<doi:10.1007/s00180-022-01270-z>.
Author: Guangbao Guo [aut, cre],
Siqi Liu [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between DLFM versions 0.2.2 dated 2026-01-26 and 0.2.3 dated 2026-03-06
DESCRIPTION | 9 +++++---- MD5 | 36 +++++++++++++++++++++++++++++++++++- data |only man/Australian.Rd |only man/Breast.Rd |only man/Heart.Rd |only man/Iris.Rd |only man/Sonar.Rd |only man/Wine.Rd |only man/bankruptcy.Rd |only man/concrete.Rd |only man/ionosphere.Rd |only man/new_energy_vehicle.Rd |only man/protein.Rd |only man/review.Rd |only man/riboflavin.Rd |only man/riboflavinv100.Rd |only man/vehicle.Rd |only man/wholesale.Rd |only man/yacht_hydrodynamics.Rd |only 20 files changed, 40 insertions(+), 5 deletions(-)
Title: Penalized Transformation Models
Description: Partially penalized versions of specific transformation models
implemented in package 'mlt'. Available models include a fully parametric version
of the Cox model, other parametric survival models (Weibull, etc.), models for
binary and ordered categorical variables, normal and transformed-normal (Box-Cox type)
linear models, and continuous outcome logistic regression. Hyperparameter tuning
is facilitated through model-based optimization functionalities from package 'mlrMBO'.
The accompanying vignette describes the methodology used in 'tramnet' in detail.
Transformation models and model-based optimization are described in
Hothorn et al. (2019) <doi:10.1111/sjos.12291> and
Bischl et al. (2016) <doi:10.48550/arXiv.1703.03373>, respectively.
Author: Lucas Kook [cre, aut],
Balint Tamasi [ctb],
Sandra Siegfried [ctb],
Samuel Pawel [ctb],
Torsten Hothorn [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between tramnet versions 0.0-10 dated 2025-11-18 and 0.0-99 dated 2026-03-06
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- R/cvl_tramnet.R | 3 +-- R/tramnet.R | 15 +++++++++++++-- inst/doc/tramnet.pdf |binary man/coef.tramnet_Lm.Rd | 4 ++-- man/tramnet.Rd | 2 +- vignettes/kook-hothorn.bib | 2 +- 8 files changed, 31 insertions(+), 21 deletions(-)
Title: Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text
Shaping
Description: Provides access to the text shaping functionality in the
'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi'
library. 'textshaping' is a low-level utility package mainly for
graphic devices that expands upon the font tool-set provided by the
'systemfonts' package.
Author: Thomas Lin Pedersen [cre, aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between textshaping versions 1.0.4 dated 2025-10-10 and 1.0.5 dated 2026-03-06
DESCRIPTION | 6 +++--- MD5 | 19 ++++++++++--------- NEWS.md | 6 +++++- R/cpp11.R | 4 ++++ R/zzz.R |only configure | 2 ++ src/cpp11.cpp | 14 +++++++++++--- src/string_metrics.cpp | 4 ++++ src/string_metrics.h | 2 ++ src/string_shape.cpp | 39 +++++++++++++++++++++------------------ src/string_shape.h | 9 +++------ 11 files changed, 65 insertions(+), 40 deletions(-)
Title: Transcription Elongation Profiling
Description: The general principle relies on calculating the cumulative signal of nascent
RNA sequencing over the gene body of any given gene or transcription unit.
'tepr' can identify transcription attenuation sites by comparing profile to
a null model which assumes uniform read density over the entirety of the
transcription unit. It can also identify increased or diminished
transcription attenuation by comparing two conditions. Besides rigorous
statistical testing and high sensitivity, a major feature of 'tepr' is its
ability to provide the elongation pattern of each individual gene, including
the position of the main attenuation point when such a phenomenon occurs.
Using 'tepr', users can visualize and refine genome-wide aggregated analyses
of elongation patterns to robustly identify effects specific to subsets of
genes. These metrics are suitable for internal comparisons (between genes in
each condition) and for studying elongation of the same gene in different
conditions or comparing it to a p [...truncated...]
Author: Nicolas Descostes [cre],
Victor Billon [aut],
Gael Cristofari [aut]
Maintainer: Nicolas Descostes <nicolas.descostes@gmail.com>
Diff between tepr versions 1.1.14 dated 2026-01-28 and 1.1.15 dated 2026-03-06
DESCRIPTION | 8 +- MD5 | 20 ++--- NAMESPACE | 3 NEWS | 7 ++ R/preprocessing-blacklisthighmap-utils.R | 84 ++++++++++++++---------- R/preprocessing-blacklisthighmap.R | 35 ++++++---- R/preprocessing-makewindows.R | 106 ++++++++++++------------------- R/preprocessing.R | 3 inst/doc/tepr.html | 52 +++++++++------ man/makewindows.Rd | 8 +- man/preprocessing.Rd | 3 11 files changed, 178 insertions(+), 151 deletions(-)
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and
high-performance 2D drawing library. The 'ragg' package provides a set
of graphic devices based on AGG to use as alternative to the raster
devices provided through the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut] ,
Maxim Shemanarev [aut, cph] ,
Tony Juricic [ctb, cph] ,
Milan Marusinec [ctb, cph] ,
Spencer Garrett [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ragg versions 1.5.0 dated 2025-09-02 and 1.5.1 dated 2026-03-06
DESCRIPTION | 8 MD5 | 53 ++--- NEWS.md | 11 + R/agg_dev.R | 6 configure | 3 man/agg_webp_anim.Rd | 2 man/ragg-package.Rd | 2 src/AggDevice.h | 10 - src/AggDeviceCapture.h | 8 src/AggDeviceWebPAnim.h | 88 ++++----- src/agg/include/agg_basics.h | 4 src/agg/include/agg_color_gray.h | 20 +- src/agg/include/agg_color_rgba.h | 16 - src/agg/include/agg_ellipse.h | 2 src/agg/include/agg_gradient_lut.h | 4 src/agg/include/agg_image_filters.h | 6 src/agg/include/agg_path_storage.h | 6 src/agg/include/agg_path_storage_integer.h | 12 - src/agg/include/agg_pixfmt_base.h | 2 src/agg/include/agg_rasterizer_scanline_aa.h | 2 src/agg/include/agg_rasterizer_sl_clip.h | 22 +- src/agg/include/agg_span_gradient.h | 42 ++-- src/agg/include/agg_span_image_filter.h | 4 src/agg/include/agg_span_interpolator_linear.h | 16 - src/agg/src/agg_vcgen_stroke.cpp | 4 src/init_device.h | 10 - src/text_renderer.h | 236 ++++++++++++++++--------- tests/testthat/test-rng-state.R |only 28 files changed, 356 insertions(+), 243 deletions(-)
Title: Normalize and Match City Names to NUTS Regions
Description: Normalizes city names for EEA countries and matches them to NUTS 3 regions using provided crosswalks. Features include comprehensive normalization rules, cascading matching logic (Exact NUTS -> Exact LAU -> Fuzzy), and single-source data synthesis. The package implements the NUTS classification as described in the NUTS methodology (Eurostat (2021) <https://ec.europa.eu/eurostat/web/nuts>).
Author: Giulian Etingin-Frati [aut, cre]
Maintainer: Giulian Etingin-Frati <etingin-frati@kof.ethz.ch>
Diff between placematchr versions 0.2.3 dated 2026-02-11 and 0.2.4 dated 2026-03-06
DESCRIPTION | 12 - LICENSE | 4 MD5 | 30 +- NAMESPACE | 6 R/data.R | 318 ++++++++++++++--------------- R/generate_fake_cities.R | 68 +++--- R/match_city.R | 386 ++++++++++++++++++------------------ README.md | 107 +++++---- inst/WORDLIST | 4 man/generate_fake_cities.Rd | 52 ++-- man/lau_data.Rd | 368 +++++++++++++++++----------------- man/match_city.Rd | 62 ++--- man/normalize_city.Rd | 54 ++--- man/nuts_data.Rd | 362 ++++++++++++++++----------------- tests/testthat.R | 8 tests/testthat/test-normalization.R | 56 ++--- 16 files changed, 949 insertions(+), 948 deletions(-)
Title: Survival Distributions with Piece-Wise Constant Hazards
Description: Density, distribution function, ... hazard function, cumulative
hazard function, survival function for survival distributions with
piece-wise constant hazards and multiple states and methods to plot and
summarise those distributions.
A derivation of the used algorithms can be found in my masters thesis
<doi:10.25365/thesis.76098>.
Author: Tobias Fellinger [aut, cre] ,
Florian Klinglmueller [aut]
Maintainer: Tobias Fellinger <tobias.fellinger@ages.at>
Diff between miniPCH versions 0.4.0 dated 2024-10-31 and 0.4.1 dated 2026-03-06
DESCRIPTION | 19 +++++++++++-------- MD5 | 10 +++++----- NEWS.md | 4 ++++ src/RcppExports.cpp | 12 ++++++------ tests/testthat/test-autoplot.R | 9 +++++++-- tests/testthat/test-plotting.R | 8 ++++++-- 6 files changed, 39 insertions(+), 23 deletions(-)
Title: Multivariate Data Analysis for Chemometrics
Description: Projection based methods for preprocessing, exploring and analysis of multivariate data used in chemometrics. S. Kucheryavskiy (2020) <doi:10.1016/j.chemolab.2020.103937>.
Author: Sergey Kucheryavskiy [aut, cre]
Maintainer: Sergey Kucheryavskiy <svkucheryavski@gmail.com>
Diff between mdatools versions 0.14.2 dated 2024-08-19 and 0.15.0 dated 2026-03-06
mdatools-0.14.2/mdatools/man/pls.simplsold.Rd |only mdatools-0.15.0/mdatools/DESCRIPTION | 22 mdatools-0.15.0/mdatools/MD5 | 476 +- mdatools-0.15.0/mdatools/NAMESPACE | 85 mdatools-0.15.0/mdatools/NEWS.md | 83 mdatools-0.15.0/mdatools/R/classmodel.R | 12 mdatools-0.15.0/mdatools/R/classres.R | 67 mdatools-0.15.0/mdatools/R/constraints.R | 29 mdatools-0.15.0/mdatools/R/crossval.R | 19 mdatools-0.15.0/mdatools/R/ddsimca.R |only mdatools-0.15.0/mdatools/R/ddsimcares.R |only mdatools-0.15.0/mdatools/R/defaults.R | 192 - mdatools-0.15.0/mdatools/R/ipls.R | 103 mdatools-0.15.0/mdatools/R/ldecomp.R | 302 + mdatools-0.15.0/mdatools/R/mcr.R | 21 mdatools-0.15.0/mdatools/R/mcrals.R | 111 mdatools-0.15.0/mdatools/R/mcrpure.R | 66 mdatools-0.15.0/mdatools/R/mdaplot.R | 142 mdatools-0.15.0/mdatools/R/mdaplotg.R | 44 mdatools-0.15.0/mdatools/R/misc.R | 369 + mdatools-0.15.0/mdatools/R/pca.R | 809 +++- mdatools-0.15.0/mdatools/R/pcares.R | 179 mdatools-0.15.0/mdatools/R/plotseries.R | 88 mdatools-0.15.0/mdatools/R/pls.R | 1032 ++++- mdatools-0.15.0/mdatools/R/plsda.R | 49 mdatools-0.15.0/mdatools/R/plsdares.R | 60 mdatools-0.15.0/mdatools/R/plsres.R | 199 - mdatools-0.15.0/mdatools/R/prep.R | 1870 ++++++++-- mdatools-0.15.0/mdatools/R/randtest.R | 26 mdatools-0.15.0/mdatools/R/regcoeffs.R | 65 mdatools-0.15.0/mdatools/R/regmodel.R | 46 mdatools-0.15.0/mdatools/R/regres.R | 44 mdatools-0.15.0/mdatools/R/simca.R | 60 mdatools-0.15.0/mdatools/R/simcam.R | 60 mdatools-0.15.0/mdatools/R/simcamres.R | 20 mdatools-0.15.0/mdatools/R/simcares.R | 12 mdatools-0.15.0/mdatools/README.md | 2 mdatools-0.15.0/mdatools/man/arr2int.Rd |only mdatools-0.15.0/mdatools/man/as.data.frame.ddsimcares.Rd |only mdatools-0.15.0/mdatools/man/as.matrix.ddsimcares.Rd |only mdatools-0.15.0/mdatools/man/as.matrix.regcoeffs.Rd | 2 mdatools-0.15.0/mdatools/man/as.matrix.simcamres.Rd | 2 mdatools-0.15.0/mdatools/man/as.matrix.simcares.Rd | 2 mdatools-0.15.0/mdatools/man/asjson.Rd |only mdatools-0.15.0/mdatools/man/asjson.ddsimca.Rd |only mdatools-0.15.0/mdatools/man/asjson.pca.Rd |only mdatools-0.15.0/mdatools/man/asjson.pls.Rd |only mdatools-0.15.0/mdatools/man/asvector.Rd |only mdatools-0.15.0/mdatools/man/asvector.pca.Rd |only mdatools-0.15.0/mdatools/man/asvector.pls.Rd |only mdatools-0.15.0/mdatools/man/capitalize.Rd | 2 mdatools-0.15.0/mdatools/man/categorize.pls.Rd | 4 mdatools-0.15.0/mdatools/man/clamp.dof.Rd |only mdatools-0.15.0/mdatools/man/classify.Rd |only mdatools-0.15.0/mdatools/man/classify.simca.Rd | 2 mdatools-0.15.0/mdatools/man/classres.Rd | 10 mdatools-0.15.0/mdatools/man/classres.getPerformance.Rd | 6 mdatools-0.15.0/mdatools/man/cleanLabels.Rd |only mdatools-0.15.0/mdatools/man/confint.regcoeffs.Rd | 4 mdatools-0.15.0/mdatools/man/constraint.Rd | 4 mdatools-0.15.0/mdatools/man/constraintClosure.Rd | 2 mdatools-0.15.0/mdatools/man/constraintUnimod.Rd | 2 mdatools-0.15.0/mdatools/man/create_categories.Rd |only mdatools-0.15.0/mdatools/man/crossval.Rd | 2 mdatools-0.15.0/mdatools/man/crossval.regmodel.Rd | 4 mdatools-0.15.0/mdatools/man/ddrobust.param.Rd | 8 mdatools-0.15.0/mdatools/man/ddsimca.Rd |only mdatools-0.15.0/mdatools/man/ddsimca.fromjson.Rd |only mdatools-0.15.0/mdatools/man/ddsimca.readJSON.Rd |only mdatools-0.15.0/mdatools/man/ddsimcares.Rd |only mdatools-0.15.0/mdatools/man/employ.prep.Rd | 2 mdatools-0.15.0/mdatools/man/extractArray.Rd |only mdatools-0.15.0/mdatools/man/extractBlock.Rd |only mdatools-0.15.0/mdatools/man/extractPrep.Rd |only mdatools-0.15.0/mdatools/man/extractStringArray.Rd |only mdatools-0.15.0/mdatools/man/extractValue.Rd |only mdatools-0.15.0/mdatools/man/fprintf.Rd | 4 mdatools-0.15.0/mdatools/man/genhash.Rd |only mdatools-0.15.0/mdatools/man/getConfidenceEllipse.Rd | 2 mdatools-0.15.0/mdatools/man/getConfusionMatrix.classres.Rd | 2 mdatools-0.15.0/mdatools/man/getConvexHull.Rd | 2 mdatools-0.15.0/mdatools/man/getMainTitle.Rd | 2 mdatools-0.15.0/mdatools/man/getProbabilities.pca.Rd | 2 mdatools-0.15.0/mdatools/man/getProbabilities.simca.Rd | 2 mdatools-0.15.0/mdatools/man/getPureVariables.Rd | 8 mdatools-0.15.0/mdatools/man/getRegcoeffs.regmodel.Rd | 4 mdatools-0.15.0/mdatools/man/getSelectedComponents.Rd | 4 mdatools-0.15.0/mdatools/man/getVIPScores.pls.Rd | 2 mdatools-0.15.0/mdatools/man/imshow.Rd | 2 mdatools-0.15.0/mdatools/man/ipls.Rd | 8 mdatools-0.15.0/mdatools/man/ipls.backward.Rd | 2 mdatools-0.15.0/mdatools/man/ipls.forward.Rd | 2 mdatools-0.15.0/mdatools/man/ldecomp.Rd | 4 mdatools-0.15.0/mdatools/man/ldecomp.getLimParams.Rd | 4 mdatools-0.15.0/mdatools/man/ldecomp.getQLimits.Rd | 2 mdatools-0.15.0/mdatools/man/ldecomp.plotDistances.Rd |only mdatools-0.15.0/mdatools/man/ldecomp.plotResiduals.Rd | 71 mdatools-0.15.0/mdatools/man/mcr.Rd | 2 mdatools-0.15.0/mdatools/man/mcrals.Rd | 32 mdatools-0.15.0/mdatools/man/mcrals.cal.Rd | 20 mdatools-0.15.0/mdatools/man/mcrpure.Rd | 8 mdatools-0.15.0/mdatools/man/mda.exclcols.Rd | 2 mdatools-0.15.0/mdatools/man/mda.exclrows.Rd | 2 mdatools-0.15.0/mdatools/man/mda.inclcols.Rd | 2 mdatools-0.15.0/mdatools/man/mda.purge.Rd | 4 mdatools-0.15.0/mdatools/man/mda.purgeCols.Rd | 4 mdatools-0.15.0/mdatools/man/mda.subset.Rd | 10 mdatools-0.15.0/mdatools/man/mdaplot.Rd | 14 mdatools-0.15.0/mdatools/man/mdaplot.formatValues.Rd | 2 mdatools-0.15.0/mdatools/man/mdaplot.getColors.Rd | 2 mdatools-0.15.0/mdatools/man/mdaplot.getXTickLabels.Rd | 2 mdatools-0.15.0/mdatools/man/mdaplot.getYTickLabels.Rd | 6 mdatools-0.15.0/mdatools/man/mdaplot.plotAxes.Rd | 2 mdatools-0.15.0/mdatools/man/mdaplot.prepareColors.Rd | 2 mdatools-0.15.0/mdatools/man/mdaplot.showLines.Rd | 2 mdatools-0.15.0/mdatools/man/mdaplotg.Rd | 2 mdatools-0.15.0/mdatools/man/mdaplotg.getYLim.Rd | 2 mdatools-0.15.0/mdatools/man/mdaplotg.prepareData.Rd | 4 mdatools-0.15.0/mdatools/man/mdaplotg.showLegend.Rd | 2 mdatools-0.15.0/mdatools/man/mdaplotyy.Rd | 4 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mdatools-0.15.0/mdatools/man/vipscores.Rd | 27 mdatools-0.15.0/mdatools/man/writeCSV.Rd |only mdatools-0.15.0/mdatools/man/writeCSV.ddsimcares.Rd |only mdatools-0.15.0/mdatools/man/writeCSV.pcares.Rd |only mdatools-0.15.0/mdatools/man/writeCSV.plsres.Rd |only mdatools-0.15.0/mdatools/man/writeJSON.Rd |only mdatools-0.15.0/mdatools/man/writeJSON.ddsimca.Rd |only mdatools-0.15.0/mdatools/man/writeJSON.pca.Rd |only mdatools-0.15.0/mdatools/man/writeJSON.pls.Rd |only mdatools-0.15.0/mdatools/man/writeJSON.prepmodel.Rd |only 296 files changed, 5621 insertions(+), 2142 deletions(-)
Title: Generating Features for a Cohort
Description: An R interface for generating features for a cohort using data in the Common Data Model. Features can be constructed using default or custom made feature definitions. Furthermore it's possible to aggregate features and get the summary statistics.
Author: Martijn Schuemie [aut],
Marc Suchard [aut],
Patrick Ryan [aut],
Jenna Reps [aut],
Anthony Sena [aut],
Ger Inberg [aut, cre],
Observational Health Data Science and Informatics [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between FeatureExtraction versions 3.12.0 dated 2025-10-28 and 3.13.0 dated 2026-03-06
DESCRIPTION | 10 MD5 | 82 +- NEWS.md | 12 R/Aggregation.R | 2 R/CompareCohorts.R | 2 R/CovariateData.R | 2 R/DefaultCovariateSettings.R | 2 R/DefaultTemporalCovariateSettings.R | 2 R/DefaultTemporalSequenceCovariateSettings.R | 2 R/DetailedCovariateSettings.R | 2 R/FeatureExtraction.R | 2 R/GetCovariates.R | 189 ++++++ R/GetCovariatesFromCohortAttributes.R | 2 R/GetCovariatesFromOtherCohorts.R | 25 R/GetDefaultCovariates.R | 344 ++++++++---- R/HelperFunctions.R | 2 R/Normalization.R | 2 R/Table1.R | 2 R/UnitTestHelperFunctions.R | 6 build/vignette.rds |binary inst/doc/CreatingCovariatesBasedOnOtherCohorts.pdf |binary inst/doc/CreatingCovariatesUsingCohortAttributes.pdf |binary inst/doc/CreatingCustomCovariateBuilders.pdf |binary inst/doc/CreatingCustomCovariateBuildersKorean.pdf |binary inst/doc/UsingFeatureExtraction.pdf |binary inst/doc/UsingFeatureExtractionKorean.pdf |binary inst/sql/sql_server/CreateExportTables.sql |only inst/sql/sql_server/DemographicsTime.sql | 12 inst/sql/sql_server/DropExportTables.sql |only inst/sql/sql_server/GetAttrCovariates.sql | 2 inst/sql/sql_server/GetHdpsCovariates.sql | 2 inst/sql/sql_server/IncludeDescendants.sql | 2 inst/sql/sql_server/RemoveCovariateTempTables.sql | 2 java/org/ohdsi/featureExtraction/FeatureExtraction.java | 2 java/org/ohdsi/featureExtraction/ReadCSVFile.java | 2 java/org/ohdsi/featureExtraction/ReadCSVFileWithHeader.java | 2 man/dot-getDbLooCovariateData.Rd | 5 man/getDbCohortBasedCovariatesData.Rd | 22 man/getDbCovariateData.Rd | 38 + man/getDbDefaultCovariateData.Rd | 20 tests/testthat/setup.R | 15 tests/testthat/test-GetDefaultCovariates.R | 19 tests/testthat/test-Table1.R | 1 43 files changed, 624 insertions(+), 214 deletions(-)
More information about FeatureExtraction at CRAN
Permanent link
Title: Parametric and Nonparametric Copula-Based Imputation Methods
Description: Copula-based imputation methods: parametric and nonparametric algorithms for missing multivariate data through conditional copulas.
Author: Francesca Marta Lilja Di Lascio [aut, cre],
Aurora Gatto [aut],
Simone Giannerini [aut]
Maintainer: Francesca Marta Lilja Di Lascio <marta.dilascio@unibz.it>
Diff between CoImp versions 2.1.1 dated 2025-10-17 and 2.2 dated 2026-03-06
ChangeLog | 5 ++ DESCRIPTION | 8 ++-- MD5 | 20 +++++------ NAMESPACE | 2 - R/InternalFunction.R | 87 +++++++++++++++++++++++++++++++++++++++++++++++++++ R/MCAR.R | 9 ++++- R/NPCoImp.R | 11 ++++-- inst/CITATION | 16 ++++----- man/MCAR.Rd | 13 +++++-- man/NPCoImp-class.Rd | 2 - man/NPCoImp.Rd | 27 +++++++++++---- 11 files changed, 160 insertions(+), 40 deletions(-)
Title: Influential Cases in Structural Equation Modeling
Description: Sensitivity analysis in structural equation modeling using
influence measures and diagnostic plots. Support leave-one-out casewise
sensitivity analysis presented by Pek and MacCallum (2011)
<doi:10.1080/00273171.2011.561068> and approximate casewise influence
using scores and casewise likelihood. An introduction to
the package can be found in Cheung and Lai (2026)
<doi:10.1080/00273171.2026.2634293>.
Author: Shu Fai Cheung [aut, cre] ,
Mark Hok Chio Lai [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between semfindr versions 0.1.9 dated 2025-03-03 and 0.2.0 dated 2026-03-06
semfindr-0.1.9/semfindr/inst/doc/casewise_scores.R |only semfindr-0.1.9/semfindr/inst/doc/semfindr.R |only semfindr-0.1.9/semfindr/inst/doc/user_id.R |only semfindr-0.1.9/semfindr/vignettes/semfindr_fit_rerun.RDS |only semfindr-0.1.9/semfindr/vignettes/user_id_fit_rerun.RDS |only semfindr-0.2.0/semfindr/DESCRIPTION | 18 semfindr-0.2.0/semfindr/MD5 | 119 semfindr-0.2.0/semfindr/NEWS.md | 15 semfindr-0.2.0/semfindr/R/est_change.R | 20 semfindr-0.2.0/semfindr/R/est_change_approx.R | 5 semfindr-0.2.0/semfindr/R/est_change_plot.R | 23 semfindr-0.2.0/semfindr/R/est_change_raw.R | 36 semfindr-0.2.0/semfindr/R/est_change_raw_approx.R | 5 semfindr-0.2.0/semfindr/R/est_change_raw_user.R | 10 semfindr-0.2.0/semfindr/R/influence_plot.R | 10 semfindr-0.2.0/semfindr/R/influence_stat.R | 18 semfindr-0.2.0/semfindr/R/print_est_change.R | 6 semfindr-0.2.0/semfindr/README.md | 28 semfindr-0.2.0/semfindr/build/partial.rdb |binary semfindr-0.2.0/semfindr/build/vignette.rds |binary semfindr-0.2.0/semfindr/inst/CITATION |only semfindr-0.2.0/semfindr/inst/doc/casewise_scores.Rmd | 490 +- semfindr-0.2.0/semfindr/inst/doc/casewise_scores.html | 369 - semfindr-0.2.0/semfindr/inst/doc/selecting_cases.Rmd | 13 semfindr-0.2.0/semfindr/inst/doc/selecting_cases.html | 82 semfindr-0.2.0/semfindr/inst/doc/semfindr.Rmd | 2307 +++++----- semfindr-0.2.0/semfindr/inst/doc/semfindr.html | 352 - semfindr-0.2.0/semfindr/inst/doc/user_id.Rmd | 361 - semfindr-0.2.0/semfindr/inst/doc/user_id.html | 294 - semfindr-0.2.0/semfindr/man/est_change.Rd | 17 semfindr-0.2.0/semfindr/man/est_change_approx.Rd | 5 semfindr-0.2.0/semfindr/man/est_change_plot.Rd | 22 semfindr-0.2.0/semfindr/man/est_change_raw.Rd | 31 semfindr-0.2.0/semfindr/man/est_change_raw_approx.Rd | 5 semfindr-0.2.0/semfindr/man/influence_plot.Rd | 7 semfindr-0.2.0/semfindr/man/influence_stat.Rd | 18 semfindr-0.2.0/semfindr/man/print.est_change.Rd | 6 semfindr-0.2.0/semfindr/man/semfindr-package.Rd | 2 semfindr-0.2.0/semfindr/man/user_change_raw.Rd | 7 semfindr-0.2.0/semfindr/vignettes/apa.csl |only semfindr-0.2.0/semfindr/vignettes/articles/multiple_group.Rmd | 4 semfindr-0.2.0/semfindr/vignettes/articles/user_fun-1.png |binary semfindr-0.2.0/semfindr/vignettes/articles/user_fun2-1.png |binary semfindr-0.2.0/semfindr/vignettes/articles/user_function.Rmd | 137 semfindr-0.2.0/semfindr/vignettes/articles/user_function.Rmd.original | 18 semfindr-0.2.0/semfindr/vignettes/casewise_scores.Rmd | 490 +- semfindr-0.2.0/semfindr/vignettes/casewise_scores.Rmd.original |only semfindr-0.2.0/semfindr/vignettes/compare-approx-gcd-1.png |only semfindr-0.2.0/semfindr/vignettes/compare-est-change-1.png |only semfindr-0.2.0/semfindr/vignettes/plot-change-chisq-1.png |only semfindr-0.2.0/semfindr/vignettes/plot-change-rmsea-1.png |only semfindr-0.2.0/semfindr/vignettes/references.bib |only semfindr-0.2.0/semfindr/vignettes/selecting_cases.Rmd | 13 semfindr-0.2.0/semfindr/vignettes/semfindr.Rmd | 2307 +++++----- semfindr-0.2.0/semfindr/vignettes/semfindr.Rmd.original |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_chagne_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_gcd_plot_approx_std_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_gcd_plot_approx_std_fig_2-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_gcd_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_gcd_plot_fig_2-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_plot_approx_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_plot_approx_fig_2-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_plot_approx_fig_3-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_plot_fig_2-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_plot_fig_3-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_gof_md_plot_approx_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_gof_md_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_gof_plot_approx_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_gof_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_plot_approx_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_md_plot_approx_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_md_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/user_id.Rmd | 361 - semfindr-0.2.0/semfindr/vignettes/user_id.Rmd.original |only semfindr-0.2.0/semfindr/vignettes/user_id_gcd_gof_md_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/user_id_gcd_gof_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/user_id_gcd_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/user_id_md_plot_fig-1.png |only 79 files changed, 4772 insertions(+), 3259 deletions(-)
Title: Access and Analysis of Brazilian CNEFE Address Data
Description: Download, cache and read municipality-level address data from the
Cadastro Nacional de Enderecos para Fins Estatisticos (CNEFE) of the 2022
Brazilian Census, published by the Instituto Brasileiro de Geografia e
Estatistica (IBGE)
<https://ftp.ibge.gov.br/Cadastro_Nacional_de_Enderecos_para_Fins_Estatisticos/>.
Beyond data access, provides spatial aggregation of addresses, computation
of land-use mix indices, and dasymetric interpolation of census tract
variables using CNEFE dwelling points as ancillary data. Results can be
produced on 'H3' hexagonal grids or user-supplied polygons, and heavy
operations leverage a 'DuckDB' backend with extensions for fast,
in-process execution.
Author: Jorge Ubirajara Pedreira Junior [aut, cre, cph] ,
Bruno Mioto [aut],
Kaio Cunha Pedreira [ctb]
Maintainer: Jorge Ubirajara Pedreira Junior <jorge.ubirajara@ufba.br>
Diff between cnefetools versions 0.2.2 dated 2026-02-27 and 0.2.3 dated 2026-03-06
DESCRIPTION | 6 ++-- MD5 | 29 +++++++++++--------- NAMESPACE | 2 + NEWS.md | 18 ++++++++++++ R/build_h3_grid.R | 34 ++++++++++++++++++++++++ R/clear_cache.R |only R/cnefe_counts.R | 30 ++++++++++++++------- R/compute_lumi.R | 32 ++++++++++++++-------- R/tracts_to_h3.R | 19 ++++++++++--- R/utils-internal.R | 45 ++++++++++++++++++++++++++++++++ inst/extdata/cnefe_dictionary_2022.xls |binary man/clear_cache_muni.Rd |only man/clear_cache_tracts.Rd |only man/cnefe_counts.Rd | 5 +++ man/compute_lumi.Rd | 5 +++ tests/testthat/test-compute_lumi.R | 14 +++++++++ tests/testthat/test-test-tracts_to_h3.R | 16 +++++++++++ 17 files changed, 214 insertions(+), 41 deletions(-)
Title: Collection of Utility Functions for Data Analysis and Computing
Description: Provides utility functions for data analysis and computing. Includes functions for logging, parallel processing, and other computational tasks to streamline workflows.
Author: Meng Xu [aut, cre]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisutils versions 0.4.2 dated 2026-02-23 and 0.4.3 dated 2026-03-06
thisutils-0.4.2/thisutils/R/check_r.R |only thisutils-0.4.3/thisutils/DESCRIPTION | 10 - thisutils-0.4.3/thisutils/MD5 | 27 +-- thisutils-0.4.3/thisutils/NAMESPACE | 3 thisutils-0.4.3/thisutils/NEWS.md | 57 ++++--- thisutils-0.4.3/thisutils/R/add_pkg_file.R | 161 ++++++++++++++------- thisutils-0.4.3/thisutils/R/package_management.R |only thisutils-0.4.3/thisutils/R/thisutils-package.R | 2 thisutils-0.4.3/thisutils/R/utils.R | 72 +++++++++ thisutils-0.4.3/thisutils/README.md | 2 thisutils-0.4.3/thisutils/man/add_pkg_file.Rd | 4 thisutils-0.4.3/thisutils/man/check_ci_env.Rd |only thisutils-0.4.3/thisutils/man/check_pkg_status.Rd |only thisutils-0.4.3/thisutils/man/check_r.Rd | 2 thisutils-0.4.3/thisutils/man/is_outlier.Rd |only thisutils-0.4.3/thisutils/man/remove_r.Rd | 2 thisutils-0.4.3/thisutils/man/thisutils-package.Rd | 2 17 files changed, 242 insertions(+), 102 deletions(-)
Title: Stochastic Tree Ensembles (XBART and BART) for Supervised
Learning and Causal Inference
Description: Flexible stochastic tree ensemble software.
Robust implementations of Bayesian Additive Regression Trees (BART)
(Chipman, George, McCulloch (2010) <doi:10.1214/09-AOAS285>)
for supervised learning and Bayesian Causal Forests (BCF)
(Hahn, Murray, Carvalho (2020) <doi:10.1214/19-BA1195>)
for causal inference. Enables model serialization and parallel sampling
and provides a low-level interface for custom stochastic forest samplers.
Includes the grow-from-root algorithm for accelerated forest sampling
(He and Hahn (2021) <doi:10.1080/01621459.2021.1942012>),
a log-linear leaf model for forest-based heteroskedasticity (Murray (2020) <doi:10.1080/01621459.2020.1813587>),
and the cloglog BART model of Alam and Linero (2025) <doi:10.48550/arXiv.2502.00606> for ordinal outcomes.
Author: Drew Herren [aut, cre] ,
Richard Hahn [aut],
Jared Murray [aut],
Carlos Carvalho [aut],
Jingyu He [aut],
Pedro Lima [ctb],
Entejar Alam [ctb],
stochtree contributors [cph],
Eigen contributors [cph] ,
xgboost contributors [cph] ,
treelite contributors [...truncated...]
Maintainer: Drew Herren <drewherrenopensource@gmail.com>
Diff between stochtree versions 0.3.1 dated 2026-02-12 and 0.4.0 dated 2026-03-06
stochtree-0.3.1/stochtree/man/computeForestLeafIndices.Rd |only stochtree-0.3.1/stochtree/man/computeForestLeafVariances.Rd |only stochtree-0.3.1/stochtree/man/computeForestMaxLeafIndex.Rd |only stochtree-0.3.1/stochtree/man/compute_bart_posterior_interval.Rd |only stochtree-0.3.1/stochtree/man/compute_bcf_posterior_interval.Rd |only stochtree-0.3.1/stochtree/man/compute_contrast_bart_model.Rd |only stochtree-0.3.1/stochtree/man/compute_contrast_bcf_model.Rd |only stochtree-0.3.1/stochtree/man/convertPreprocessorToJson.Rd |only stochtree-0.3.1/stochtree/man/createBARTModelFromCombinedJson.Rd |only stochtree-0.3.1/stochtree/man/createBARTModelFromCombinedJsonString.Rd |only stochtree-0.3.1/stochtree/man/createBARTModelFromJson.Rd |only stochtree-0.3.1/stochtree/man/createBARTModelFromJsonFile.Rd |only stochtree-0.3.1/stochtree/man/createBARTModelFromJsonString.Rd |only stochtree-0.3.1/stochtree/man/createBCFModelFromCombinedJson.Rd |only stochtree-0.3.1/stochtree/man/createBCFModelFromCombinedJsonString.Rd |only stochtree-0.3.1/stochtree/man/createBCFModelFromJson.Rd |only stochtree-0.3.1/stochtree/man/createBCFModelFromJsonFile.Rd |only stochtree-0.3.1/stochtree/man/createBCFModelFromJsonString.Rd |only stochtree-0.3.1/stochtree/man/createCppJson.Rd |only stochtree-0.3.1/stochtree/man/createCppJsonFile.Rd |only stochtree-0.3.1/stochtree/man/createCppJsonString.Rd |only stochtree-0.3.1/stochtree/man/createPreprocessorFromJson.Rd |only stochtree-0.3.1/stochtree/man/createPreprocessorFromJsonString.Rd |only stochtree-0.3.1/stochtree/man/extract_parameter.Rd |only stochtree-0.3.1/stochtree/man/extract_parameter.bartmodel.Rd |only stochtree-0.3.1/stochtree/man/extract_parameter.bcfmodel.Rd |only stochtree-0.3.1/stochtree/man/loadForestContainerCombinedJson.Rd |only stochtree-0.3.1/stochtree/man/loadForestContainerCombinedJsonString.Rd |only stochtree-0.3.1/stochtree/man/loadForestContainerJson.Rd |only 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stochtree-0.3.1/stochtree/man/saveBARTModelToJsonString.Rd |only stochtree-0.3.1/stochtree/man/saveBCFModelToJson.Rd |only stochtree-0.3.1/stochtree/man/saveBCFModelToJsonFile.Rd |only stochtree-0.3.1/stochtree/man/saveBCFModelToJsonString.Rd |only stochtree-0.3.1/stochtree/man/savePreprocessorToJsonString.Rd |only stochtree-0.4.0/stochtree/DESCRIPTION | 16 stochtree-0.4.0/stochtree/MD5 | 244 - stochtree-0.4.0/stochtree/NAMESPACE | 24 stochtree-0.4.0/stochtree/NEWS.md | 34 stochtree-0.4.0/stochtree/R/bart.R | 1237 +++++++--- stochtree-0.4.0/stochtree/R/bcf.R | 888 ++----- stochtree-0.4.0/stochtree/R/calibration.R | 6 stochtree-0.4.0/stochtree/R/config.R | 56 stochtree-0.4.0/stochtree/R/cpp11.R | 36 stochtree-0.4.0/stochtree/R/data.R | 80 stochtree-0.4.0/stochtree/R/forest.R | 215 + stochtree-0.4.0/stochtree/R/generics.R | 10 stochtree-0.4.0/stochtree/R/kernel.R | 96 stochtree-0.4.0/stochtree/R/model.R | 21 stochtree-0.4.0/stochtree/R/posterior_transformation.R | 376 ++- stochtree-0.4.0/stochtree/R/random_effects.R | 320 +- stochtree-0.4.0/stochtree/R/serialization.R | 297 +- stochtree-0.4.0/stochtree/R/stochtree-package.R | 1 stochtree-0.4.0/stochtree/R/utils.R | 210 + stochtree-0.4.0/stochtree/R/variance.R | 8 stochtree-0.4.0/stochtree/configure | 18 stochtree-0.4.0/stochtree/configure.ac | 2 stochtree-0.4.0/stochtree/man/BARTSerialization.Rd |only stochtree-0.4.0/stochtree/man/BCFSerialization.Rd |only stochtree-0.4.0/stochtree/man/CppJson.Rd | 2 stochtree-0.4.0/stochtree/man/DataPreprocessing.Rd |only stochtree-0.4.0/stochtree/man/Forest.Rd | 12 stochtree-0.4.0/stochtree/man/ForestDataset.Rd | 113 stochtree-0.4.0/stochtree/man/ForestKernelComputation.Rd |only stochtree-0.4.0/stochtree/man/ForestModel.Rd | 2 stochtree-0.4.0/stochtree/man/ForestModelConfig.Rd | 74 stochtree-0.4.0/stochtree/man/ForestSamples.Rd | 12 stochtree-0.4.0/stochtree/man/ForestSamplesSerialization.Rd |only stochtree-0.4.0/stochtree/man/ForestStateManagement.Rd |only stochtree-0.4.0/stochtree/man/GlobalModelConfig.Rd | 2 stochtree-0.4.0/stochtree/man/JSONCreation.Rd |only stochtree-0.4.0/stochtree/man/Outcome.Rd | 6 stochtree-0.4.0/stochtree/man/OutcomeModel.Rd |only stochtree-0.4.0/stochtree/man/RandomEffectSamples.Rd | 44 stochtree-0.4.0/stochtree/man/RandomEffectSamplesSerialization.Rd |only stochtree-0.4.0/stochtree/man/RandomEffectStateManagement.Rd |only stochtree-0.4.0/stochtree/man/RandomEffectsDataset.Rd | 2 stochtree-0.4.0/stochtree/man/RandomEffectsModel.Rd | 2 stochtree-0.4.0/stochtree/man/RandomEffectsTracker.Rd | 2 stochtree-0.4.0/stochtree/man/bart.Rd | 5 stochtree-0.4.0/stochtree/man/bcf.Rd | 5 stochtree-0.4.0/stochtree/man/calibrateInverseGammaErrorVariance.Rd | 6 stochtree-0.4.0/stochtree/man/computeBARTPosteriorInterval.Rd |only stochtree-0.4.0/stochtree/man/computeBCFPosteriorInterval.Rd |only stochtree-0.4.0/stochtree/man/computeContrastBARTModel.Rd |only stochtree-0.4.0/stochtree/man/computeContrastBCFModel.Rd |only stochtree-0.4.0/stochtree/man/createCppRNG.Rd | 2 stochtree-0.4.0/stochtree/man/createForest.Rd | 4 stochtree-0.4.0/stochtree/man/createForestDataset.Rd | 4 stochtree-0.4.0/stochtree/man/createForestModel.Rd | 4 stochtree-0.4.0/stochtree/man/createForestModelConfig.Rd | 10 stochtree-0.4.0/stochtree/man/createForestSamples.Rd | 4 stochtree-0.4.0/stochtree/man/createGlobalModelConfig.Rd | 4 stochtree-0.4.0/stochtree/man/createOutcome.Rd | 4 stochtree-0.4.0/stochtree/man/createRandomEffectSamples.Rd | 4 stochtree-0.4.0/stochtree/man/createRandomEffectsDataset.Rd | 4 stochtree-0.4.0/stochtree/man/createRandomEffectsModel.Rd | 4 stochtree-0.4.0/stochtree/man/createRandomEffectsTracker.Rd | 4 stochtree-0.4.0/stochtree/man/extractParameter.Rd |only stochtree-0.4.0/stochtree/man/extractParameter.bartmodel.Rd |only stochtree-0.4.0/stochtree/man/extractParameter.bcfmodel.Rd |only stochtree-0.4.0/stochtree/man/getRandomEffectSamples.Rd | 2 stochtree-0.4.0/stochtree/man/getRandomEffectSamples.bartmodel.Rd | 2 stochtree-0.4.0/stochtree/man/getRandomEffectSamples.bcfmodel.Rd | 2 stochtree-0.4.0/stochtree/man/loadScalarJson.Rd | 4 stochtree-0.4.0/stochtree/man/loadVectorJson.Rd | 4 stochtree-0.4.0/stochtree/man/plot.bartmodel.Rd | 2 stochtree-0.4.0/stochtree/man/plot.bcfmodel.Rd | 2 stochtree-0.4.0/stochtree/man/predict.bartmodel.Rd | 4 stochtree-0.4.0/stochtree/man/predict.bcfmodel.Rd | 2 stochtree-0.4.0/stochtree/man/print.ForestSamples.Rd |only stochtree-0.4.0/stochtree/man/print.RandomEffectSamples.Rd |only stochtree-0.4.0/stochtree/man/print.bartmodel.Rd | 2 stochtree-0.4.0/stochtree/man/print.bcfmodel.Rd | 2 stochtree-0.4.0/stochtree/man/sampleBARTPosteriorPredictive.Rd |only stochtree-0.4.0/stochtree/man/sampleBCFPosteriorPredictive.Rd |only stochtree-0.4.0/stochtree/man/sampleGlobalErrorVarianceOneIteration.Rd | 4 stochtree-0.4.0/stochtree/man/sampleLeafVarianceOneIteration.Rd | 4 stochtree-0.4.0/stochtree/man/sample_without_replacement.Rd | 4 stochtree-0.4.0/stochtree/man/stochtree-package.Rd | 3 stochtree-0.4.0/stochtree/man/summary.bartmodel.Rd | 2 stochtree-0.4.0/stochtree/man/summary.bcfmodel.Rd | 2 stochtree-0.4.0/stochtree/src/Makevars.in | 1 stochtree-0.4.0/stochtree/src/Makevars.win.in | 1 stochtree-0.4.0/stochtree/src/R_data.cpp | 31 stochtree-0.4.0/stochtree/src/cpp11.cpp | 77 stochtree-0.4.0/stochtree/src/forest.cpp | 6 stochtree-0.4.0/stochtree/src/include/stochtree/data.h | 33 stochtree-0.4.0/stochtree/src/include/stochtree/leaf_model.h | 636 +++-- stochtree-0.4.0/stochtree/src/include/stochtree/ordinal_sampler.h |only stochtree-0.4.0/stochtree/src/include/stochtree/partition_tracker.h | 2 stochtree-0.4.0/stochtree/src/include/stochtree/tree_sampler.h | 51 stochtree-0.4.0/stochtree/src/kernel.cpp | 1 stochtree-0.4.0/stochtree/src/leaf_model.cpp | 60 stochtree-0.4.0/stochtree/src/ordinal_sampler.cpp |only stochtree-0.4.0/stochtree/src/partition_tracker.cpp | 56 stochtree-0.4.0/stochtree/src/sampler.cpp | 150 - stochtree-0.4.0/stochtree/src/stochtree_types.h | 2 stochtree-0.4.0/stochtree/tests/testthat/test-api-combinations.R | 12 stochtree-0.4.0/stochtree/tests/testthat/test-bart.R | 512 ++++ stochtree-0.4.0/stochtree/tests/testthat/test-extract-parameter.R |only stochtree-0.4.0/stochtree/tests/testthat/test-forest-container.R | 24 stochtree-0.4.0/stochtree/tests/testthat/test-predict.R | 1051 ++++++++ stochtree-0.4.0/stochtree/tests/testthat/test-print-summary.R |only stochtree-0.4.0/stochtree/tests/testthat/test-random-effects.R | 101 stochtree-0.4.0/stochtree/tests/testthat/test-utils.R | 32 160 files changed, 5195 insertions(+), 2227 deletions(-)
Title: Import Various Northern and Southern Hemisphere Climate Indices
Description: Downloads Southern Oscillation Index, Oceanic Nino
Index, North Pacific Gyre Oscillation data, North Atlantic Oscillation
and Arctic Oscillation. Data sources are described in the help files for each function.
Author: Sam Albers [aut, cre],
Elio Campitelli [ctb]
Maintainer: Sam Albers <sam.albers@gmail.com>
Diff between rsoi versions 0.5.6 dated 2023-11-16 and 0.5.7 dated 2026-03-06
DESCRIPTION | 13 +-- MD5 | 66 +++++++++--------- NAMESPACE | 1 NEWS.md | 8 +- R/download-aao.R | 59 ++++++++-------- R/download-ao.R | 69 ++++++++++--------- R/download-asymsam.R | 123 +++++----------------------------- R/download-dmi.R | 71 ++++++++++--------- R/download-enso.R | 72 +++++++++---------- R/download-nao.R | 70 ++++++++++--------- R/download-npgo.R | 57 ++++++++------- R/download-oni.R | 108 +++++++++++++++++------------ R/download-pdo.R | 93 +++++++++++++------------ R/download-roni.R |only R/download-soi.R | 80 +++++++++++----------- R/download_mei.R | 130 +++++++++++++++++++++++------------- R/rsoi-package.R | 2 R/utils.R | 91 ++++++++++++++----------- README.md | 16 ++-- build/partial.rdb |binary man/download_asymsam_monthly.Rd | 27 +------ man/download_dmi.Rd | 8 +- man/download_enso.Rd | 2 man/download_mei.Rd | 10 +- man/download_npgo.Rd | 3 man/download_oni.Rd | 2 man/download_pdo.Rd | 12 +-- man/download_roni.Rd |only man/figures/plot-1.png |binary man/rsoi-package.Rd | 3 tests/testthat/helper.R | 14 ++- tests/testthat/test-cache_logic.R | 75 +++++++++++++++----- tests/testthat/test-download-oni.R | 2 tests/testthat/test_download_.R | 20 +++-- tests/testthat/test_download_enso.R | 8 +- 35 files changed, 687 insertions(+), 628 deletions(-)
Title: Build Modern Web Applications with 'htmx' and 'plumber2'
Description: A lightweight framework for building server-driven web
applications in 'R'. 'htmxr' combines the simplicity of 'htmx' for
partial page updates with the power of 'plumber2' for non-blocking
HTTP endpoints. Build interactive dashboards and data applications
without writing 'JavaScript', using familiar 'R' patterns inspired by
'Shiny'. For more information on 'htmx', see <https://htmx.org>.
Author: Arthur Breant [aut, cre]
Maintainer: Arthur Breant <arthur@thinkr.fr>
Diff between htmxr versions 0.1.1 dated 2026-03-04 and 0.2.0 dated 2026-03-06
htmxr-0.1.1/htmxr/R/htmxr_is_htmx.R |only htmxr-0.1.1/htmxr/build |only htmxr-0.1.1/htmxr/inst/doc |only htmxr-0.1.1/htmxr/man/htmxr_is_htmx.Rd |only htmxr-0.1.1/htmxr/tests/testthat/test-htmxr_is_htmx.R |only htmxr-0.1.1/htmxr/vignettes |only htmxr-0.2.0/htmxr/DESCRIPTION | 10 +-- htmxr-0.2.0/htmxr/MD5 | 49 ++++++++---------- htmxr-0.2.0/htmxr/NAMESPACE | 5 + htmxr-0.2.0/htmxr/NEWS.md | 23 ++++++++ htmxr-0.2.0/htmxr/R/hx_button.R | 15 ++--- htmxr-0.2.0/htmxr/R/hx_is_htmx.R |only htmxr-0.2.0/htmxr/R/hx_table.R | 8 +- htmxr-0.2.0/htmxr/R/hx_trigger.R |only htmxr-0.2.0/htmxr/R/utils.R |only htmxr-0.2.0/htmxr/README.md | 9 +++ htmxr-0.2.0/htmxr/inst/examples/json-endpoint/api.R | 2 htmxr-0.2.0/htmxr/inst/examples/select-input/api.R | 2 htmxr-0.2.0/htmxr/inst/examples/toast-notification |only htmxr-0.2.0/htmxr/man/figures/intro_htmxr.png |binary htmxr-0.2.0/htmxr/man/figures/intro_htmxr_hello.png |binary htmxr-0.2.0/htmxr/man/hx_button.Rd | 15 ++--- htmxr-0.2.0/htmxr/man/hx_is_htmx.Rd |only htmxr-0.2.0/htmxr/man/hx_table.Rd | 6 +- htmxr-0.2.0/htmxr/man/hx_trigger.Rd |only htmxr-0.2.0/htmxr/tests/testthat/test-hx_button.R | 19 +++--- htmxr-0.2.0/htmxr/tests/testthat/test-hx_is_htmx.R |only htmxr-0.2.0/htmxr/tests/testthat/test-hx_table.R | 4 - htmxr-0.2.0/htmxr/tests/testthat/test-hx_trigger.R |only htmxr-0.2.0/htmxr/tests/testthat/test-utils.R |only 30 files changed, 100 insertions(+), 67 deletions(-)
Title: Cross-Platform File System Operations Based on 'libuv'
Description: A cross-platform interface to file system operations, built
on top of the 'libuv' C library.
Author: Jim Hester [aut],
Hadley Wickham [aut],
Gabor Csardi [aut],
Jeroen Ooms [cre],
libuv project contributors [cph] ,
Joyent, Inc. and other Node contributors [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between fs versions 1.6.6 dated 2025-04-12 and 1.6.7 dated 2026-03-06
DESCRIPTION | 26 +- LICENSE | 2 MD5 | 139 ++++++----- NAMESPACE | 2 NEWS.md | 16 + R/access.R | 11 R/copy.R | 42 ++- R/create.R | 21 + R/delete.R | 20 + R/file.R | 37 ++- R/fs_bytes.R | 63 +++-- R/fs_path.R | 36 ++ R/fs_perms.R | 35 ++ R/is.R | 20 + R/list.R | 80 +++++- R/path.R | 78 ++++-- R/path_package.R | 17 - R/path_select.R |only R/temp.R | 1 R/tree.R | 34 ++ R/utils.R | 48 +++ README.md | 149 ++++++------ build/vignette.rds |binary inst/WORDLIST | 5 inst/doc/function-comparisons.R | 2 inst/doc/function-comparisons.Rmd | 6 inst/doc/function-comparisons.html | 2 man/dir_tree.Rd | 1 man/file_access.Rd | 9 man/file_touch.Rd | 5 man/fs-package.Rd | 7 man/is_dir_empty.Rd |only man/path_file.Rd | 16 - man/path_select_components.Rd |only man/path_tidy.Rd | 2 src/Makevars | 14 - src/Makevars.ucrt |only src/Makevars.win | 12 src/init.cc | 3 src/libuv-1.44.2/src/unix/core.c | 27 +- src/libuv-1.44.2/src/unix/darwin-proctitle.c | 2 src/libuv-1.44.2/src/unix/fs.c | 4 src/libuv-1.44.2/src/unix/process.c | 8 src/libuv-1.44.2/src/unix/tty.c | 2 src/libuv-1.44.2/src/unix/udp.c | 2 src/path.cc | 11 src/windows/getmode.cc | 2 tests/spelling.R | 9 tests/testthat/_snaps/file.md |only tests/testthat/_snaps/fs_bytes.md |only tests/testthat/_snaps/fs_path.md |only tests/testthat/_snaps/fs_perms.md |only tests/testthat/_snaps/path.md |only tests/testthat/_snaps/path_select.md |only tests/testthat/helper.R | 8 tests/testthat/test-access.R | 34 ++ tests/testthat/test-copy.R | 116 +++++---- tests/testthat/test-create.R | 8 tests/testthat/test-delete.R | 44 +-- tests/testthat/test-file.R | 125 ++++++---- tests/testthat/test-file_exists.R | 1 tests/testthat/test-fs_bytes.R | 35 +- tests/testthat/test-fs_path.R | 84 ++++-- tests/testthat/test-fs_perms.R | 173 +++++++------- tests/testthat/test-id.R | 9 tests/testthat/test-is.R | 5 tests/testthat/test-link.R | 1 tests/testthat/test-list.R | 331 ++++++++++++++++----------- tests/testthat/test-path.R | 229 ++++++++++++------ tests/testthat/test-path_package.R | 1 tests/testthat/test-path_select.R |only tests/testthat/test-sanitize.R | 119 +++++---- tests/testthat/test-temp.R | 3 tests/testthat/test-tree.R | 24 + tests/testthat/test-utils.R | 1 vignettes/function-comparisons.Rmd | 6 76 files changed, 1537 insertions(+), 848 deletions(-)
Title: Plots for Compositional Data
Description: Provides a collection of easy-to-use functions for creating
visualizations of compositional data using 'ggplot2'. Includes support
for common plotting techniques in compositional data analysis.
Author: Marc Comas-Cufi [aut, cre]
Maintainer: Marc Comas-Cufi <mcomas@imae.udg.edu>
Diff between coda.plot versions 0.1.10 dated 2025-09-23 and 0.2.1 dated 2026-03-06
DESCRIPTION | 10 MD5 | 20 - R/balance_dendrogram.R | 570 ++++++++++++++++++++++-------------------- R/clr_ciplot.R | 264 ++++++++++++------- R/geometric_mean_barplot.R | 199 +++++++++----- R/ternary_diagram.R | 300 +++++++++++++--------- R/zzz.R | 2 man/balance_dendrogram.Rd | 10 man/clr_biplot.Rd | 53 +++ man/geometric_mean_barplot.Rd | 21 - man/ternary_diagram.Rd | 53 +++ 11 files changed, 901 insertions(+), 601 deletions(-)
Title: Acoustic Telemetry Data Analysis
Description: Designed for studies where animals tagged with acoustic tags are expected
to move through receiver arrays. This package combines the advantages of automatic sorting and checking
of animal movements with the possibility for user intervention on tags that deviate from expected
behaviour. The three analysis functions (explore(), migration() and residency())
allow the users to analyse their data in a systematic way, making it easy to compare results from
different studies.
CJS calculations are based on Perry et al. (2012) <https://www.researchgate.net/publication/256443823_Using_mark-recapture_models_to_estimate_survival_from_telemetry_data>.
Author: Hugo Flavio [aut, cre] ,
Devon Smith [ctb]
Maintainer: Hugo Flavio <hflavio@dal.ca>
Diff between actel versions 1.3.0 dated 2023-10-18 and 1.4.0 dated 2026-03-06
actel-1.3.0/actel/man/appendTo.Rd |only actel-1.3.0/actel/man/checkFirstDetBackFromRelease.Rd |only actel-1.3.0/actel/man/checkIssue79.Rd |only actel-1.3.0/actel/man/emergencyBreak.Rd |only actel-1.3.0/actel/man/overrideValidityChecks.Rd |only actel-1.3.0/actel/man/printSurvivalGraphic.Rd |only actel-1.3.0/actel/man/stopAndReport.Rd |only actel-1.4.0/actel/DESCRIPTION | 30 actel-1.4.0/actel/MD5 | 261 actel-1.4.0/actel/NAMESPACE | 2 actel-1.4.0/actel/NEWS.md | 44 actel-1.4.0/actel/R/CJS.R | 383 - actel-1.4.0/actel/R/actel.R | 10 actel-1.4.0/actel/R/check.R | 1560 +++-- actel-1.4.0/actel/R/distances.R | 549 + actel-1.4.0/actel/R/explore.R | 316 - actel-1.4.0/actel/R/get.R | 555 + actel-1.4.0/actel/R/helper.R | 736 ++ actel-1.4.0/actel/R/load.R | 2929 ++++++---- actel-1.4.0/actel/R/migration.R | 1973 ++++-- actel-1.4.0/actel/R/movements.R | 148 actel-1.4.0/actel/R/plot.R | 852 ++ actel-1.4.0/actel/R/preload.R | 509 + actel-1.4.0/actel/R/print.R | 656 +- actel-1.4.0/actel/R/residency.R | 651 +- actel-1.4.0/actel/R/sysdata.rda |binary actel-1.4.0/actel/R/user_interaction.R | 476 + actel-1.4.0/actel/R/widget_setups.R | 152 actel-1.4.0/actel/R/z_examples.R | 6 actel-1.4.0/actel/R/zzz.R | 11 actel-1.4.0/actel/README.md | 86 actel-1.4.0/actel/build/vignette.rds |binary actel-1.4.0/actel/data/additional.residency.results.rda |binary actel-1.4.0/actel/data/example.results.rda |binary actel-1.4.0/actel/inst/doc/actel-website.Rmd | 2 actel-1.4.0/actel/inst/doc/actel-website.html | 38 actel-1.4.0/actel/man/actel.Rd | 9 actel-1.4.0/actel/man/assembleArrayCJS.Rd | 4 actel-1.4.0/actel/man/assembleGroupCJS.Rd | 4 actel-1.4.0/actel/man/assembleMatrices.Rd | 11 actel-1.4.0/actel/man/assembleOutput.Rd | 3 actel-1.4.0/actel/man/assembleSectionOverview.Rd | 11 actel-1.4.0/actel/man/assembleSplitCJS.Rd | 4 actel-1.4.0/actel/man/assembleTimetable.Rd | 22 actel-1.4.0/actel/man/assembleValidMoves.Rd | 8 actel-1.4.0/actel/man/blameArrays.Rd | 2 actel-1.4.0/actel/man/breakMatricesByArray.Rd | 6 actel-1.4.0/actel/man/checkArguments.Rd | 27 actel-1.4.0/actel/man/checkFirstMove.Rd |only actel-1.4.0/actel/man/checkImpassables.Rd | 4 actel-1.4.0/actel/man/checkJumpDistance.Rd | 8 actel-1.4.0/actel/man/checkLinearity.Rd | 23 actel-1.4.0/actel/man/cjs_args.Rd | 6 actel-1.4.0/actel/man/collectStrays.Rd | 6 actel-1.4.0/actel/man/completeMatrix.Rd | 8 actel-1.4.0/actel/man/convertCodes.Rd | 3 actel-1.4.0/actel/man/convertLotekCDMAFile.Rd |only actel-1.4.0/actel/man/convertTimes.Rd | 3 actel-1.4.0/actel/man/countArrayFailures.Rd | 4 actel-1.4.0/actel/man/countBackMoves.Rd | 10 actel-1.4.0/actel/man/createStandards.Rd | 3 actel-1.4.0/actel/man/deleteHelpers.Rd | 3 actel-1.4.0/actel/man/distancesMatrix.Rd | 45 actel-1.4.0/actel/man/dotList.Rd | 4 actel-1.4.0/actel/man/dotMatrix.Rd | 3 actel-1.4.0/actel/man/efficiencyMatrix.Rd | 8 actel-1.4.0/actel/man/emptyMatrix.Rd | 12 actel-1.4.0/actel/man/event.Rd |only actel-1.4.0/actel/man/excludeTags.Rd | 9 actel-1.4.0/actel/man/expFirstArray.Rd |only actel-1.4.0/actel/man/explore.Rd | 17 actel-1.4.0/actel/man/findDirectChains.Rd | 7 actel-1.4.0/actel/man/findPeers.Rd | 13 actel-1.4.0/actel/man/findSecondsPerSection.Rd | 9 actel-1.4.0/actel/man/firstArrayFailure.Rd | 4 actel-1.4.0/actel/man/getSpeeds.Rd | 13 actel-1.4.0/actel/man/getSpeedsChecker.Rd |only actel-1.4.0/actel/man/getSpeedsCompiler.Rd |only actel-1.4.0/actel/man/getTimes.Rd | 9 actel-1.4.0/actel/man/groupMovements.Rd | 8 actel-1.4.0/actel/man/loadDetections.Rd | 3 actel-1.4.0/actel/man/loadDistances.Rd | 6 actel-1.4.0/actel/man/loadDot.Rd | 6 actel-1.4.0/actel/man/loadShape.Rd | 28 actel-1.4.0/actel/man/loadSpatial.Rd | 14 actel-1.4.0/actel/man/loadStudyData.Rd | 15 actel-1.4.0/actel/man/migration.Rd | 123 actel-1.4.0/actel/man/movementSpeeds.Rd | 8 actel-1.4.0/actel/man/oneWayMoves.Rd | 3 actel-1.4.0/actel/man/overrideChecks.Rd |only actel-1.4.0/actel/man/parse_arg.Rd |only actel-1.4.0/actel/man/parse_list.Rd |only actel-1.4.0/actel/man/plotDetections.Rd | 3 actel-1.4.0/actel/man/plotDot.Rd |only actel-1.4.0/actel/man/preload.Rd | 15 actel-1.4.0/actel/man/printIndividuals.Rd | 3 actel-1.4.0/actel/man/printMigrationRmd.Rd | 30 actel-1.4.0/actel/man/printResidencyRmd.Rd | 12 actel-1.4.0/actel/man/printSurvivalGraphics.Rd |only actel-1.4.0/actel/man/processInnovaseaFile.Rd |only actel-1.4.0/actel/man/res_efficiency.Rd | 6 actel-1.4.0/actel/man/residency.Rd | 20 actel-1.4.0/actel/man/setSpatialStandards.Rd | 3 actel-1.4.0/actel/man/shapeToRaster.Rd | 62 actel-1.4.0/actel/man/simplifyMovements.Rd | 8 actel-1.4.0/actel/man/speedReleaseToFirst.Rd | 8 actel-1.4.0/actel/man/splitDetections.Rd | 6 actel-1.4.0/actel/man/transformSpatial.Rd | 5 actel-1.4.0/actel/man/transitionLayer.Rd | 31 actel-1.4.0/actel/tests/testthat/aux_dotPaths_complex_text_disregard_parallels_false.RData |binary actel-1.4.0/actel/tests/testthat/aux_dotPaths_complex_text_disregard_parallels_true.RData |binary actel-1.4.0/actel/tests/testthat/test_CJS_functions.R | 28 actel-1.4.0/actel/tests/testthat/test_CJS_functions_2_releases.R | 39 actel-1.4.0/actel/tests/testthat/test_array_movement_checks.R | 131 actel-1.4.0/actel/tests/testthat/test_blankWorkspace.R | 2 actel-1.4.0/actel/tests/testthat/test_convertLotekCDMAFile.R |only actel-1.4.0/actel/tests/testthat/test_createStandards.R | 10 actel-1.4.0/actel/tests/testthat/test_distancesMatrix_functions.R | 35 actel-1.4.0/actel/tests/testthat/test_dotList.R | 22 actel-1.4.0/actel/tests/testthat/test_exampleWorkspace.R | 2 actel-1.4.0/actel/tests/testthat/test_explore.R | 30 actel-1.4.0/actel/tests/testthat/test_getSpeeds.R | 13 actel-1.4.0/actel/tests/testthat/test_helpers.R | 32 actel-1.4.0/actel/tests/testthat/test_loadDetections.R | 5 actel-1.4.0/actel/tests/testthat/test_loadDistances.R | 7 actel-1.4.0/actel/tests/testthat/test_loadDot.R | 110 actel-1.4.0/actel/tests/testthat/test_loadSpatial.R | 8 actel-1.4.0/actel/tests/testthat/test_loadStudyData.R | 2 actel-1.4.0/actel/tests/testthat/test_migration.R | 32 actel-1.4.0/actel/tests/testthat/test_migration_helpers.R | 69 actel-1.4.0/actel/tests/testthat/test_plotArray.R | 2 actel-1.4.0/actel/tests/testthat/test_plotDot.R |only actel-1.4.0/actel/tests/testthat/test_plotLive.R | 5 actel-1.4.0/actel/tests/testthat/test_plotSensors.R | 2 actel-1.4.0/actel/tests/testthat/test_plotTimes.R | 16 actel-1.4.0/actel/tests/testthat/test_preload.R | 552 + actel-1.4.0/actel/tests/testthat/test_print_extremes.R | 12 actel-1.4.0/actel/tests/testthat/test_residency.R | 34 actel-1.4.0/actel/tests/testthat/test_residency_helpers.R | 21 actel-1.4.0/actel/tests/testthat/test_sectionMovements.R | 10 actel-1.4.0/actel/tests/testthat/test_transformSpatial.R | 23 actel-1.4.0/actel/vignettes/actel-website.Rmd | 2 142 files changed, 9708 insertions(+), 5254 deletions(-)
Title: Optimize and Compress Images
Description: Optimize and compress images using 'Rust' libraries to reduce
file sizes while maintaining image quality. Supports PNG palette
reduction and dithering via the 'exoquant' crate before lossless PNG
optimization via the 'oxipng' crate. The package provides functions to
optimize individual image files or entire directories, with configurable
compression levels.
Author: Yihui Xie [aut, cre, cph] ,
Authors of the dependency Rust crates [ctb, cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinyimg versions 0.2 dated 2026-02-20 and 0.3 dated 2026-03-06
tinyimg-0.2/tinyimg/R/optim_png.R |only tinyimg-0.2/tinyimg/man/optim_png.Rd |only tinyimg-0.3/tinyimg/DESCRIPTION | 13 - tinyimg-0.3/tinyimg/MD5 | 33 ++-- tinyimg-0.3/tinyimg/NAMESPACE | 2 tinyimg-0.3/tinyimg/NEWS.md | 16 +- tinyimg-0.3/tinyimg/R/extendr-wrappers.R | 4 tinyimg-0.3/tinyimg/R/tinypng.R |only tinyimg-0.3/tinyimg/README.md | 19 +- tinyimg-0.3/tinyimg/configure | 2 tinyimg-0.3/tinyimg/inst/AUTHORS | 3 tinyimg-0.3/tinyimg/man/tinypng.Rd |only tinyimg-0.3/tinyimg/src/Makevars | 17 ++ tinyimg-0.3/tinyimg/src/entrypoint.c | 5 tinyimg-0.3/tinyimg/src/rust/Cargo.lock | 18 ++ tinyimg-0.3/tinyimg/src/rust/Cargo.toml | 2 tinyimg-0.3/tinyimg/src/rust/src/lib.rs | 232 ++++++++++++++++++++++++----- tinyimg-0.3/tinyimg/src/rust/vendor.tar.xz |binary tinyimg-0.3/tinyimg/tests/test-all.R | 143 ----------------- tinyimg-0.3/tinyimg/tests/testit |only 20 files changed, 289 insertions(+), 220 deletions(-)
Title: Tidy Consultant Universe
Description: Loads the 5 packages in the Tidy Consultant Universe. This collection of packages is useful for anyone doing data science,
data analysis, or quantitative consulting. The functions in these packages range from data cleaning, data validation, data binning, statistical modeling, and file exporting.
Author: Harrison Tietze [aut, cre]
Maintainer: Harrison Tietze <Harrison4192@gmail.com>
This is a re-admission after prior archival of version 0.1.1 dated 2024-06-07
Diff between TidyConsultant versions 0.1.1 dated 2024-06-07 and 0.1.2 dated 2026-03-06
DESCRIPTION | 8 ++-- MD5 | 12 +++--- NEWS.md | 2 + README.md | 2 - build/vignette.rds |binary inst/doc/TidyConsultant.R | 8 ++-- inst/doc/TidyConsultant.html | 83 +++++++++++++++++++++---------------------- 7 files changed, 59 insertions(+), 56 deletions(-)
More information about TidyConsultant at CRAN
Permanent link
Title: Regression-Based Causal Mediation Analysis with Interaction and
Effect Modification Terms
Description: This is an extension of the regression-based causal mediation analysis first proposed by Valeri and VanderWeele (2013) <doi:10.1037/a0031034> and Valeri and VanderWeele (2015) <doi:10.1097/EDE.0000000000000253>). It supports including effect measure modification by covariates(treatment-covariate and mediator-covariate product terms in mediator and outcome regression models) as proposed by Li et al (2023) <doi:10.1097/EDE.0000000000001643>. It also accommodates the original 'SAS' macro and 'PROC CAUSALMED' procedure in 'SAS' when there is no effect measure modification. Linear and logistic models are supported for the mediator model. Linear, logistic, loglinear, Poisson, negative binomial, Cox, and accelerated failure time (exponential and Weibull) models are supported for the outcome model.
Author: Kazuki Yoshida [ctb, aut] ,
Yi Li [cre, aut] ,
Maya Mathur [ctb]
Maintainer: Yi Li <yi.li10@mail.mcgill.ca>
This is a re-admission after prior archival of version 1.0.1 dated 2024-01-12
Diff between regmedint versions 1.0.1 dated 2024-01-12 and 1.0.2 dated 2026-03-06
DESCRIPTION | 40 MD5 | 33 NAMESPACE | 2 R/00_package_information.R | 10 R/03_fit_mreg_mediator_modeling.R | 1 R/06_calc_myreg_helpers_coef.R | 2 build/vignette.rds |binary inst/doc/vig_01_introduction.html | 222 ++-- inst/doc/vig_02_formulas.html | 173 +-- inst/doc/vig_03_bootstrap.html | 376 ++++---- inst/doc/vig_04_mi.html | 397 ++++---- inst/doc/vig_05_emm.html | 338 +++---- inst/doc/vig_06_delta_boot.R | 520 +++++------ inst/doc/vig_06_delta_boot.html | 1612 +++++++++++++++++++++++++++--------- man/regmedint-package.Rd |only man/regmedint.Rd | 22 man/vv2015.Rd | 2 tests/testthat/test-05_calc_myreg.R | 188 ++-- 18 files changed, 2373 insertions(+), 1565 deletions(-)
Title: Multilevel Model Intraclass Correlation for Slope Heterogeneity
Description: A function and vignettes for computing an intraclass correlation
described in Aguinis & Culpepper (2015) <doi:10.1177/1094428114563618>.
This package quantifies the share of variance in a dependent variable that
is attributed to group heterogeneity in slopes.
Author: Steven Andrew Culpepper [aut, cph, cre] ,
Herman Aguinis [aut, cph]
Maintainer: Steven Andrew Culpepper <sculpepp@illinois.edu>
This is a re-admission after prior archival of version 1.2.0 dated 2019-01-28
Diff between iccbeta versions 1.2.0 dated 2019-01-28 and 1.2.1 dated 2026-03-06
DESCRIPTION | 27 +++++++++++++++------------ MD5 | 23 ++++++++++++----------- NEWS.md | 16 ++++++++++++++++ README.md | 26 +++++++++----------------- build |only inst/CITATION | 16 ++++++++-------- man/Hofmann.Rd | 6 ++++-- man/icc_beta.Rd | 2 +- man/iccbeta-package.Rd | 10 ++++------ man/simICCdata.Rd | 6 ++++-- src/Makevars | 3 --- src/Makevars.win | 3 --- src/RcppExports.cpp | 5 +++++ 13 files changed, 78 insertions(+), 65 deletions(-)
Title: Disciplined Convex Optimization
Description: An object-oriented modeling language for disciplined
convex programming (DCP) as described in Fu, Narasimhan, and Boyd
(2020, <doi:10.18637/jss.v094.i14>). It allows the user to
formulate convex optimization problems in a natural way following
mathematical convention and DCP rules. The system analyzes the
problem, verifies its convexity, converts it into a canonical
form, and hands it off to an appropriate solver to obtain the
solution. This version uses the S7 object system for improved
performance and maintainability.
Author: Anqi Fu [aut, cre],
Balasubramanian Narasimhan [aut],
Steven Diamond [aut],
John Miller [aut],
Stephen Boyd [ctb]
Maintainer: Anqi Fu <anqif@alumni.stanford.edu>
Diff between CVXR versions 1.0-15 dated 2024-11-07 and 1.8.1 dated 2026-03-06
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CVXR-1.8.1/CVXR/NAMESPACE | 249 - CVXR-1.8.1/CVXR/NEWS.md | 187 + CVXR-1.8.1/CVXR/R/001_zzz_R_specific_CVXR-package.R |only CVXR-1.8.1/CVXR/R/002_zzz_R_specific_globals.R |only CVXR-1.8.1/CVXR/R/003_utilities_scopes.R |only CVXR-1.8.1/CVXR/R/004_zzz_R_specific_generics.R |only CVXR-1.8.1/CVXR/R/005_zzz_R_specific_utility.R |only CVXR-1.8.1/CVXR/R/006_utilities_sign.R |only CVXR-1.8.1/CVXR/R/007_utilities_shape.R |only CVXR-1.8.1/CVXR/R/008_utilities_error.R |only CVXR-1.8.1/CVXR/R/009_utilities_power_tools.R |only CVXR-1.8.1/CVXR/R/010_settings.R |only CVXR-1.8.1/CVXR/R/011_lin_ops_LinOp.R |only CVXR-1.8.1/CVXR/R/012_lin_ops_LinOpVector.R |only CVXR-1.8.1/CVXR/R/013_lin_ops_RcppExports.R |only CVXR-1.8.1/CVXR/R/014_lin_ops_CVXcanon.R |only CVXR-1.8.1/CVXR/R/015_cvxcore_r_canonInterface.R |only CVXR-1.8.1/CVXR/R/016_zzz_R_specific_rcppUtils.R |only CVXR-1.8.1/CVXR/R/017_zzz_R_specific_sparse_utils.R |only CVXR-1.8.1/CVXR/R/018_zzz_R_specific_coll_utils.R |only 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CVXR-1.8.1/CVXR/man/curvature.Rd | 32 CVXR-1.8.1/CVXR/man/cvar.Rd |only CVXR-1.8.1/CVXR/man/cvxr_diff.Rd |only CVXR-1.8.1/CVXR/man/cvxr_mean.Rd |only CVXR-1.8.1/CVXR/man/cvxr_norm.Rd | 25 CVXR-1.8.1/CVXR/man/cvxr_outer.Rd |only CVXR-1.8.1/CVXR/man/cvxr_promote.Rd |only CVXR-1.8.1/CVXR/man/cvxr_std.Rd |only CVXR-1.8.1/CVXR/man/cvxr_var.Rd |only CVXR-1.8.1/CVXR/man/diff_pos.Rd |only CVXR-1.8.1/CVXR/man/dist_ratio.Rd |only CVXR-1.8.1/CVXR/man/domain.Rd | 40 CVXR-1.8.1/CVXR/man/dotsort.Rd |only CVXR-1.8.1/CVXR/man/dpp_scope_active.Rd |only CVXR-1.8.1/CVXR/man/dspop.Rd | 8 CVXR-1.8.1/CVXR/man/dssamp.Rd | 8 CVXR-1.8.1/CVXR/man/dual_cone.Rd |only CVXR-1.8.1/CVXR/man/dual_residual.Rd |only CVXR-1.8.1/CVXR/man/dual_value.Rd |only CVXR-1.8.1/CVXR/man/entr.Rd | 19 CVXR-1.8.1/CVXR/man/expr_H.Rd |only CVXR-1.8.1/CVXR/man/expr_copy.Rd |only CVXR-1.8.1/CVXR/man/expr_name.Rd |only CVXR-1.8.1/CVXR/man/expr_sign.Rd |only CVXR-1.8.1/CVXR/man/eye_minus_inv.Rd | 24 CVXR-1.8.1/CVXR/man/floor_expr.Rd |only CVXR-1.8.1/CVXR/man/gen_lambda_max.Rd |only CVXR-1.8.1/CVXR/man/geo_mean.Rd | 43 CVXR-1.8.1/CVXR/man/get_data.Rd | 16 CVXR-1.8.1/CVXR/man/get_problem_data.Rd | 36 CVXR-1.8.1/CVXR/man/gmatmul.Rd |only CVXR-1.8.1/CVXR/man/grad.Rd | 33 CVXR-1.8.1/CVXR/man/grapes-greater-than-greater-than-grapes.Rd |only CVXR-1.8.1/CVXR/man/grapes-less-than-less-than-grapes.Rd |only CVXR-1.8.1/CVXR/man/graph_implementation.Rd | 22 CVXR-1.8.1/CVXR/man/harmonic_mean.Rd | 18 CVXR-1.8.1/CVXR/man/has_quadratic_term.Rd |only CVXR-1.8.1/CVXR/man/hstack.Rd | 43 CVXR-1.8.1/CVXR/man/huber.Rd | 40 CVXR-1.8.1/CVXR/man/id.Rd | 22 CVXR-1.8.1/CVXR/man/iff.Rd |only CVXR-1.8.1/CVXR/man/imag_expr.Rd |only CVXR-1.8.1/CVXR/man/implies.Rd |only CVXR-1.8.1/CVXR/man/indicator.Rd |only CVXR-1.8.1/CVXR/man/installed_solvers.Rd | 30 CVXR-1.8.1/CVXR/man/intf_convert.Rd |only CVXR-1.8.1/CVXR/man/intf_is_hermitian.Rd |only CVXR-1.8.1/CVXR/man/intf_is_psd.Rd |only CVXR-1.8.1/CVXR/man/intf_is_skew_symmetric.Rd |only CVXR-1.8.1/CVXR/man/intf_is_sparse.Rd |only CVXR-1.8.1/CVXR/man/intf_shape.Rd |only CVXR-1.8.1/CVXR/man/intf_sign.Rd |only CVXR-1.8.1/CVXR/man/inv_pos.Rd | 18 CVXR-1.8.1/CVXR/man/inv_prod.Rd |only CVXR-1.8.1/CVXR/man/is_affine.Rd |only CVXR-1.8.1/CVXR/man/is_atom_concave.Rd |only CVXR-1.8.1/CVXR/man/is_atom_convex.Rd |only CVXR-1.8.1/CVXR/man/is_atom_log_log_concave.Rd |only CVXR-1.8.1/CVXR/man/is_atom_log_log_convex.Rd |only CVXR-1.8.1/CVXR/man/is_atom_quasiconcave.Rd |only CVXR-1.8.1/CVXR/man/is_atom_quasiconvex.Rd |only CVXR-1.8.1/CVXR/man/is_complex.Rd |only CVXR-1.8.1/CVXR/man/is_concave.Rd |only CVXR-1.8.1/CVXR/man/is_constant.Rd |only CVXR-1.8.1/CVXR/man/is_convex.Rd |only CVXR-1.8.1/CVXR/man/is_dcp.Rd | 22 CVXR-1.8.1/CVXR/man/is_decr.Rd |only CVXR-1.8.1/CVXR/man/is_dgp.Rd | 22 CVXR-1.8.1/CVXR/man/is_dpp.Rd |only CVXR-1.8.1/CVXR/man/is_dqcp.Rd |only CVXR-1.8.1/CVXR/man/is_hermitian.Rd |only CVXR-1.8.1/CVXR/man/is_imag.Rd |only CVXR-1.8.1/CVXR/man/is_incr.Rd |only 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CVXR-1.8.1/CVXR/man/is_vector.Rd |only CVXR-1.8.1/CVXR/man/is_zero.Rd |only CVXR-1.8.1/CVXR/man/kl_div.Rd | 32 CVXR-1.8.1/CVXR/man/kron.Rd |only CVXR-1.8.1/CVXR/man/lambda_max.Rd | 24 CVXR-1.8.1/CVXR/man/lambda_min.Rd | 19 CVXR-1.8.1/CVXR/man/lambda_sum_largest.Rd | 21 CVXR-1.8.1/CVXR/man/lambda_sum_smallest.Rd | 21 CVXR-1.8.1/CVXR/man/length_expr.Rd |only CVXR-1.8.1/CVXR/man/linop_args_push_back.Rd |only CVXR-1.8.1/CVXR/man/linop_new.Rd |only CVXR-1.8.1/CVXR/man/linop_set_data_ndim.Rd |only CVXR-1.8.1/CVXR/man/linop_set_dense_data.Rd |only CVXR-1.8.1/CVXR/man/linop_set_linop_data.Rd |only CVXR-1.8.1/CVXR/man/linop_set_sparse_data.Rd |only CVXR-1.8.1/CVXR/man/linop_set_type.Rd |only CVXR-1.8.1/CVXR/man/linop_size_push_back.Rd |only CVXR-1.8.1/CVXR/man/linop_slice_push_back.Rd |only CVXR-1.8.1/CVXR/man/log1p_atom.Rd |only CVXR-1.8.1/CVXR/man/log_det.Rd | 25 CVXR-1.8.1/CVXR/man/log_normcdf.Rd |only CVXR-1.8.1/CVXR/man/log_sum_exp.Rd | 24 CVXR-1.8.1/CVXR/man/loggamma.Rd |only CVXR-1.8.1/CVXR/man/logistic.Rd | 35 CVXR-1.8.1/CVXR/man/make_sparse_diagonal_matrix.Rd | 2 CVXR-1.8.1/CVXR/man/math_atoms.Rd |only CVXR-1.8.1/CVXR/man/matrix_frac.Rd | 40 CVXR-1.8.1/CVXR/man/matrix_trace.Rd | 22 CVXR-1.8.1/CVXR/man/max_elemwise.Rd | 23 CVXR-1.8.1/CVXR/man/max_entries.Rd | 49 CVXR-1.8.1/CVXR/man/min_elemwise.Rd | 24 CVXR-1.8.1/CVXR/man/min_entries.Rd | 37 CVXR-1.8.1/CVXR/man/mixed_norm.Rd | 29 CVXR-1.8.1/CVXR/man/mul_sign.Rd |only CVXR-1.8.1/CVXR/man/multiply.Rd | 27 CVXR-1.8.1/CVXR/man/name.Rd | 19 CVXR-1.8.1/CVXR/man/neg.Rd | 18 CVXR-1.8.1/CVXR/man/norm1.Rd | 36 CVXR-1.8.1/CVXR/man/norm2.Rd | 47 CVXR-1.8.1/CVXR/man/norm_inf.Rd | 45 CVXR-1.8.1/CVXR/man/norm_nuc.Rd | 18 CVXR-1.8.1/CVXR/man/num_cones.Rd |only CVXR-1.8.1/CVXR/man/numeric_value.Rd |only CVXR-1.8.1/CVXR/man/objective.Rd |only CVXR-1.8.1/CVXR/man/one_minus_pos.Rd | 24 CVXR-1.8.1/CVXR/man/p_norm.Rd | 65 CVXR-1.8.1/CVXR/man/parameters.Rd |only CVXR-1.8.1/CVXR/man/partial_trace.Rd |only CVXR-1.8.1/CVXR/man/partial_transpose.Rd |only CVXR-1.8.1/CVXR/man/perspective.Rd |only CVXR-1.8.1/CVXR/man/pf_eigenvalue.Rd | 36 CVXR-1.8.1/CVXR/man/pos.Rd | 18 CVXR-1.8.1/CVXR/man/power.Rd | 61 CVXR-1.8.1/CVXR/man/problem_data.Rd |only CVXR-1.8.1/CVXR/man/problem_solution.Rd |only CVXR-1.8.1/CVXR/man/problem_status.Rd |only CVXR-1.8.1/CVXR/man/problem_unpack_results.Rd |only CVXR-1.8.1/CVXR/man/prod_entries.Rd | 47 CVXR-1.8.1/CVXR/man/project.Rd |only CVXR-1.8.1/CVXR/man/psolve.Rd | 131 CVXR-1.8.1/CVXR/man/ptp.Rd |only CVXR-1.8.1/CVXR/man/quad_form.Rd | 35 CVXR-1.8.1/CVXR/man/quad_over_lin.Rd | 29 CVXR-1.8.1/CVXR/man/real_expr.Rd |only CVXR-1.8.1/CVXR/man/reduction_accepts.Rd |only CVXR-1.8.1/CVXR/man/reduction_apply.Rd |only CVXR-1.8.1/CVXR/man/reduction_invert.Rd |only CVXR-1.8.1/CVXR/man/rel_entr.Rd |only CVXR-1.8.1/CVXR/man/reshape_expr.Rd | 66 CVXR-1.8.1/CVXR/man/residual.Rd |only CVXR-1.8.1/CVXR/man/resolvent.Rd |only CVXR-1.8.1/CVXR/man/save_dual_value.Rd |only CVXR-1.8.1/CVXR/man/scalar_product.Rd |only CVXR-1.8.1/CVXR/man/scalene.Rd | 26 CVXR-1.8.1/CVXR/man/set_label.Rd |only CVXR-1.8.1/CVXR/man/shape_from_args.Rd |only CVXR-1.8.1/CVXR/man/sigma_max.Rd | 23 CVXR-1.8.1/CVXR/man/sign_from_args.Rd | 18 CVXR-1.8.1/CVXR/man/size.Rd | 28 CVXR-1.8.1/CVXR/man/smith_annotation.Rd |only CVXR-1.8.1/CVXR/man/solution.Rd |only CVXR-1.8.1/CVXR/man/solve_via_data.Rd |only CVXR-1.8.1/CVXR/man/solver-constants.Rd |only CVXR-1.8.1/CVXR/man/solver_default_param.Rd |only CVXR-1.8.1/CVXR/man/solver_name.Rd |only CVXR-1.8.1/CVXR/man/solver_stats.Rd |only CVXR-1.8.1/CVXR/man/square.Rd | 21 CVXR-1.8.1/CVXR/man/status-constants.Rd |only CVXR-1.8.1/CVXR/man/status.Rd |only CVXR-1.8.1/CVXR/man/sum_entries.Rd | 49 CVXR-1.8.1/CVXR/man/sum_largest.Rd | 28 CVXR-1.8.1/CVXR/man/sum_signs.Rd |only CVXR-1.8.1/CVXR/man/sum_smallest.Rd | 29 CVXR-1.8.1/CVXR/man/sum_squares.Rd | 34 CVXR-1.8.1/CVXR/man/to_latex.Rd |only CVXR-1.8.1/CVXR/man/total_variation.Rd |only CVXR-1.8.1/CVXR/man/tr_inv.Rd |only CVXR-1.8.1/CVXR/man/tree_copy.Rd |only CVXR-1.8.1/CVXR/man/tv.Rd | 42 CVXR-1.8.1/CVXR/man/unpack_results.Rd | 69 CVXR-1.8.1/CVXR/man/update_parameters.Rd |only CVXR-1.8.1/CVXR/man/upper_tri.Rd | 21 CVXR-1.8.1/CVXR/man/validate_arguments.Rd |only CVXR-1.8.1/CVXR/man/value-set.Rd |only CVXR-1.8.1/CVXR/man/value.Rd |only CVXR-1.8.1/CVXR/man/variables.Rd |only CVXR-1.8.1/CVXR/man/vdot.Rd |only CVXR-1.8.1/CVXR/man/vec.Rd | 24 CVXR-1.8.1/CVXR/man/vec_to_upper_tri.Rd |only CVXR-1.8.1/CVXR/man/violation.Rd |only CVXR-1.8.1/CVXR/man/visualize.Rd |only CVXR-1.8.1/CVXR/man/vstack.Rd | 37 CVXR-1.8.1/CVXR/man/with_dpp_scope.Rd |only CVXR-1.8.1/CVXR/man/xexp.Rd |only CVXR-1.8.1/CVXR/src/CVXcanon.cpp | 416 -- CVXR-1.8.1/CVXR/src/CVXcanon.h | 13 CVXR-1.8.1/CVXR/src/LinOpOperations.cpp | 1120 ++++--- CVXR-1.8.1/CVXR/src/LinOpOperations.h | 6 CVXR-1.8.1/CVXR/src/Makevars | 4 CVXR-1.8.1/CVXR/src/RcppCVXcanon.cpp | 95 CVXR-1.8.1/CVXR/src/RcppExports.cpp | 183 - CVXR-1.8.1/CVXR/src/RcppLinOp.cpp | 169 - CVXR-1.8.1/CVXR/src/RcppLinOpVector.cpp | 22 CVXR-1.8.1/CVXR/src/RcppProblemData.cpp | 215 - CVXR-1.8.1/CVXR/src/Utils.cpp |only CVXR-1.8.1/CVXR/tests/testthat.R |only CVXR-1.8.1/CVXR/tests/testthat/helper-solver-test-problems.R |only CVXR-1.8.1/CVXR/tests/testthat/helper-solvers.R |only CVXR-1.8.1/CVXR/tests/testthat/test-cran-solver-matrix.R |only CVXR-1.8.1/CVXR/vignettes/cvxr_intro.Rmd | 293 -- CVXR-1.8.1/CVXR/vignettes/whats_new.Rmd |only 981 files changed, 3433 insertions(+), 5329 deletions(-)
Title: Bayesian Nonparametric Mixture Models
Description: Functions to perform Bayesian nonparametric univariate and multivariate density estimation and clustering, by means of Pitman-Yor mixtures, and dependent Dirichlet process mixtures for partially exchangeable data. See Corradin et al. (2021) <doi:10.18637/jss.v100.i15> for more details.
Author: Riccardo Corradin [aut, cre],
Antonio Canale [ctb],
Bernardo Nipoti [ctb]
Maintainer: Riccardo Corradin <riccardo.corradin@gmail.com>
This is a re-admission after prior archival of version 1.1.0 dated 2025-10-21
Diff between BNPmix versions 1.1.0 dated 2025-10-21 and 1.2.1 dated 2026-03-06
DESCRIPTION | 14 +++++----- LICENSE | 16 +++++------ MD5 | 26 +++++++++--------- NAMESPACE | 2 - R/RcppExports.R | 52 ++++++++++++++++++------------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/BNPmix.pdf |binary src/BNPmix_init.c | 70 +++++++++++++++++++++++++-------------------------- src/MAR.cpp | 4 +- src/Makevars | 2 - src/Makevars.win | 3 -- src/MarFunctions.cpp | 4 +- src/MarFunctions.h | 2 - 14 files changed, 95 insertions(+), 100 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-19 1.2.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-20 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-21 0.1.3
2026-01-28 0.1.2
2026-01-26 0.1.1
2025-12-22 0.1.0
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie [aut, cre] ,
Tomas Kalibera [ctb],
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.16 dated 2026-02-23 and 0.17 dated 2026-03-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/testit.R | 3 ++- R/utils.R | 7 +++---- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Fast and Scalable Approximate k-Nearest Neighbor Search Methods
using 'N2' Library
Description: Implements methods to perform fast approximate K-nearest neighbor search on input matrix. Algorithm based on the 'N2' implementation of an approximate nearest neighbor search using hierarchical Navigable Small World (NSW) graphs. The original algorithm is described in "Efficient and Robust Approximate Nearest Neighbor Search Using Hierarchical Navigable Small World Graphs", Y. Malkov and D. Yashunin, <doi:10.1109/TPAMI.2018.2889473>, <doi:10.48550/arXiv.1603.09320>.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
Dirk Eddelbuettel [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between N2R versions 1.0.2 dated 2024-02-26 and 1.0.4 dated 2026-03-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ README.md | 4 ++-- src/Makevars | 2 +- src/Makevars.win | 2 +- src/n2/Makefile | 4 ++-- src/n2/Makefile.win | 4 ++-- 7 files changed, 18 insertions(+), 18 deletions(-)
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for (1) data handling (e.g., grand-mean and group-mean centering, coding variables and reverse coding items, scale and cluster scores, reading and writing Excel and SPSS files), (2) descriptive statistics (e.g., frequency table, cross tabulation, effect size measures), (3) missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), (4) multilevel data (e.g., multilevel descriptive statistics, within-group and between-group correlation matrix, multilevel confirmatory factor analysis, level-specific fit indices, cross-level measurement equivalence evaluation, multilevel composite reliability, and multilevel R-squared measures), (5) item analysis (e.g., confirmatory factor analysis, coefficient alpha and omega, between-group and longitudinal measurement equivalence evaluation), (6) statistical analysis (e.g., bootstrap confidence intervals, collinearity and resid [...truncated...]
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.8.0 dated 2026-01-18 and 0.8.1 dated 2026-03-06
DESCRIPTION | 13 MD5 | 52 - NAMESPACE | 2 NEWS.md | 23 R/coeff.robust.R | 64 +- R/coeff.std.R | 8 R/df.check.R | 1 R/difftest.chibarsq.R |only R/item.alpha.R | 2 R/item.cfa.R | 2 R/item.invar.R | 237 ++++--- R/item.noninvar.R |only R/multilevel.cfa.R | 2 R/multilevel.r2.R | 2 R/print.misty.object.R | 1457 ++++++++++++++++++++++++++++++++++++++-------- R/start_message.R | 2 R/summa.R | 793 ++++++++++++++++++++----- R/utils.R | 338 ++++++++++ R/write.result.R | 1316 +++++++++++++++++++++++++++++------------ R/write.xlsx.R | 13 man/coeff.robust.Rd | 19 man/difftest.chibarsq.Rd |only man/item.alpha.Rd | 2 man/item.cfa.Rd | 5 man/item.invar.Rd | 72 +- man/item.noninvar.Rd |only man/print.misty.object.Rd | 6 man/summa.Rd | 109 +-- man/write.result.Rd | 18 29 files changed, 3496 insertions(+), 1062 deletions(-)
Title: Interactive Maps with 'Mapbox GL JS' and 'MapLibre GL JS'
Description: Provides an interface to the 'Mapbox GL JS' (<https://docs.mapbox.com/mapbox-gl-js/guides>)
and the 'MapLibre GL JS' (<https://maplibre.org/maplibre-gl-js/docs/>) interactive mapping libraries to help users
create custom interactive maps in R. Users can create interactive globe visualizations; layer 'sf' objects to create
filled maps, circle maps, 'heatmaps', and three-dimensional graphics; and customize map styles and views. The package
also includes utilities to use 'Mapbox' and 'MapLibre' maps in 'Shiny' web applications.
Author: Kyle Walker [aut, cre]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between mapgl versions 0.4.4 dated 2026-01-12 and 0.4.5 dated 2026-03-06
DESCRIPTION | 8 MD5 | 44 - NAMESPACE | 2 NEWS.md | 22 R/legends.R | 24 R/legends_compare.R | 3 R/style_helpers.R | 312 ++++++++++ inst/htmlwidgets/lib/legend-interactivity/legend-interactivity.css | 42 + inst/htmlwidgets/lib/legend-interactivity/legend-interactivity.js | 230 ++++++- inst/htmlwidgets/lib/mapbox-pmtiles/pmtiles-source-optimized-v2.js | 8 inst/htmlwidgets/lib/maplibre-gl/maplibre-gl.css | 2 inst/htmlwidgets/lib/maplibre-gl/maplibre-gl.js | 8 inst/htmlwidgets/lib/pmtiles/pmtiles.js | 2 inst/htmlwidgets/mapboxgl.js | 74 +- inst/htmlwidgets/mapboxgl.yaml | 10 inst/htmlwidgets/mapboxgl_compare.js | 45 - inst/htmlwidgets/mapboxgl_compare.yaml | 6 inst/htmlwidgets/maplibregl.js | 116 ++- inst/htmlwidgets/maplibregl.yaml | 4 inst/htmlwidgets/maplibregl_compare.js | 87 +- inst/htmlwidgets/maplibregl_compare.yaml | 2 man/esri_open_style.Rd |only man/esri_style.Rd |only man/map_legends.Rd | 17 24 files changed, 831 insertions(+), 237 deletions(-)
Title: Implements the Leiden Algorithm via an R Interface
Description: An R interface to the Leiden algorithm, an iterative community detection algorithm on networks. The algorithm is designed to converge to a partition in which all subsets of all communities are locally optimally assigned, yielding communities guaranteed to be connected. The implementation proves to be fast, scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The original implementation was constructed as a python interface "leidenalg" found here: <https://github.com/vtraag/leidenalg>. The algorithm was originally described in Traag, V.A., Waltman, L. & van Eck, N.J. "From Louvain to Leiden: guaranteeing well-connected communities". Sci Rep 9, 5233 (2019) <doi:10.1038/s41598-019-41695-z>.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
Yichen Wang [aut],
V.A. Traag [ctb],
Gabor Csardi [ctb],
Tamas Nepusz [ctb],
Minh Van Nguyen [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between leidenAlg versions 1.1.5 dated 2025-04-19 and 1.1.6 dated 2026-03-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- README.md | 2 +- src/Makevars | 2 +- src/Makevars.win | 2 +- src/rigraph/rinterface.c | 5 ++++- 6 files changed, 15 insertions(+), 12 deletions(-)
Title: Syntax Highlighting for R Source Code
Description: Provides syntax highlighting for R source code. Currently it
supports LaTeX and HTML output. Source code of other languages is supported
via Andre Simon's highlight package (<https://gitlab.com/saalen/highlight>).
Author: Yihui Xie [aut, cre] ,
Yixuan Qiu [aut],
Christopher Gandrud [ctb],
Qiang Li [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between highr versions 0.11 dated 2024-05-26 and 0.12 dated 2026-03-06
highr-0.11/highr/tests/testit/test-hilight.R |only highr-0.11/highr/tests/testit/test-utils.R |only highr-0.12/highr/DESCRIPTION | 10 +++++----- highr-0.12/highr/MD5 | 18 +++++++++--------- highr-0.12/highr/NAMESPACE | 3 +++ highr-0.12/highr/R/highlight.R | 17 ++++++++++------- highr-0.12/highr/R/utils.R | 5 +++-- highr-0.12/highr/build/vignette.rds |binary highr-0.12/highr/inst/doc/highr-custom.html | 22 ++++++++++------------ highr-0.12/highr/inst/doc/highr-internals.html | 18 ++++++++---------- highr-0.12/highr/tests/testit/test-hilight.md |only highr-0.12/highr/tests/testit/test-utils.md |only 12 files changed, 48 insertions(+), 45 deletions(-)
Title: Descriptive Statistics, Transition Plots, and More
Description: Utilities for common medical-statistics graphics
and tables, including automatic creation of publication-ready "Table 1"
summaries; transition (Sankey) plots; flow-chart helpers that extend the
grid package; Bézier lines and arrows; and a singular-value-decomposition-
based variable-selection method.
Author: Max Gordon [aut, cre]
Maintainer: Max Gordon <max@gforge.se>
Diff between Gmisc versions 3.1.0 dated 2026-01-12 and 3.2.0 dated 2026-03-06
Gmisc-3.1.0/Gmisc/R/boxGrob_prConvert2Coords.R |only Gmisc-3.1.0/Gmisc/R/boxGrob_spread_npc_norm_helpers.R |only Gmisc-3.1.0/Gmisc/tests/testthat/Rplots.pdf |only Gmisc-3.1.0/Gmisc/tests/visual_tests |only Gmisc-3.2.0/Gmisc/DESCRIPTION | 22 Gmisc-3.2.0/Gmisc/MD5 | 200 ++- Gmisc-3.2.0/Gmisc/NAMESPACE | 26 Gmisc-3.2.0/Gmisc/NEWS.md | 11 Gmisc-3.2.0/Gmisc/R/bezierArrowGradient.R | 13 Gmisc-3.2.0/Gmisc/R/boxGrobs_align.R | 291 ++--- Gmisc-3.2.0/Gmisc/R/boxGrobs_align_pr_helpers.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_align_subelement_helpers.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_boxHeaderGrob.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_boxPropGrob.R | 20 Gmisc-3.2.0/Gmisc/R/boxGrobs_connect.R | 109 + Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_helpers.R | 287 ++++ Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_many_to_one_boxes.R | 157 +- Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_many_to_one_fan_in_center_boxes.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_many_to_one_fan_in_on_top_boxes.R | 151 -- Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_one_to_many_boxes.R | 140 +- Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_single_boxes.R | 119 -- Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_strategies.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_distance.R | 19 Gmisc-3.2.0/Gmisc/R/boxGrobs_labelConnector.R | 58 Gmisc-3.2.0/Gmisc/R/boxGrobs_move.R | 160 +- Gmisc-3.2.0/Gmisc/R/boxGrobs_prConvert2Coords.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_prCreateBoxCoordinates.R | 17 Gmisc-3.2.0/Gmisc/R/boxGrobs_print.Gmisc_list_of_boxes.R | 13 Gmisc-3.2.0/Gmisc/R/boxGrobs_private_helpers.R | 276 ++++ Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_align.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_append.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_connect.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_move.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_spread.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_utils.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_spread.R | 339 +++-- Gmisc-3.2.0/Gmisc/R/boxGrobs_spread_npc_norm_helpers.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_units.R |only Gmisc-3.2.0/Gmisc/R/descGetMissing.R | 20 Gmisc-3.2.0/Gmisc/R/descriptionStats.R | 13 Gmisc-3.2.0/Gmisc/R/flowchart.R |only Gmisc-3.2.0/Gmisc/R/getDescriptionStatsBy_helpers.R |only Gmisc-3.2.0/Gmisc/R/getDescriptionStatsBy_prAddEmptyVals.R | 8 Gmisc-3.2.0/Gmisc/R/mergeDesc_S3_fns.R | 8 Gmisc-3.2.0/Gmisc/R/private_functions.R | 215 +-- Gmisc-3.2.0/Gmisc/R/transitionClass_helpers.R | 59 - Gmisc-3.2.0/Gmisc/R/transitionPlot.R | 12 Gmisc-3.2.0/Gmisc/R/transitionPlot_helpers.R | 4 Gmisc-3.2.0/Gmisc/inst/doc/Descriptives.html | 4 Gmisc-3.2.0/Gmisc/inst/doc/Grid-based_flowcharts.R | 437 +++++-- Gmisc-3.2.0/Gmisc/inst/doc/Grid-based_flowcharts.Rmd | 452 +++++-- Gmisc-3.2.0/Gmisc/inst/doc/Grid-based_flowcharts.html | 581 +++++++--- Gmisc-3.2.0/Gmisc/inst/doc/Transition-class.html | 4 Gmisc-3.2.0/Gmisc/inst/doc/transitionPlot.html | 4 Gmisc-3.2.0/Gmisc/inst/examples/alignBox_ex.R | 27 Gmisc-3.2.0/Gmisc/inst/examples/boxHeaderGrob_example.R |only Gmisc-3.2.0/Gmisc/inst/examples/connectGrob_example.R | 8 Gmisc-3.2.0/Gmisc/inst/examples/moveBox_ex.R | 17 Gmisc-3.2.0/Gmisc/inst/examples/spreadBox_ex.R | 22 Gmisc-3.2.0/Gmisc/man/Gmisc-package.Rd | 2 Gmisc-3.2.0/Gmisc/man/MidDistanceX.Rd |only Gmisc-3.2.0/Gmisc/man/align.Rd | 102 + Gmisc-3.2.0/Gmisc/man/append.Rd |only Gmisc-3.2.0/Gmisc/man/box.Rd | 9 Gmisc-3.2.0/Gmisc/man/boxHeaderGrob.Rd |only Gmisc-3.2.0/Gmisc/man/boxPropGrob.Rd | 9 Gmisc-3.2.0/Gmisc/man/boxShapes.Rd | 9 Gmisc-3.2.0/Gmisc/man/connect.Rd | 72 + Gmisc-3.2.0/Gmisc/man/coords.Rd | 9 Gmisc-3.2.0/Gmisc/man/distance.Rd | 9 Gmisc-3.2.0/Gmisc/man/flowchart.Rd |only Gmisc-3.2.0/Gmisc/man/insert.Rd |only Gmisc-3.2.0/Gmisc/man/labelConnector.Rd | 14 Gmisc-3.2.0/Gmisc/man/move.Rd |only Gmisc-3.2.0/Gmisc/man/moveBox.Rd | 35 Gmisc-3.2.0/Gmisc/man/prConvert2Coords.Rd | 27 Gmisc-3.2.0/Gmisc/man/prDescGetAndValidateDefaultRef.Rd | 2 Gmisc-3.2.0/Gmisc/man/prGetBoxAxisDefaults.Rd | 11 Gmisc-3.2.0/Gmisc/man/prGetStatistics.Rd | 2 Gmisc-3.2.0/Gmisc/man/setConnectorLabels.Rd | 4 Gmisc-3.2.0/Gmisc/man/spread.Rd | 113 + Gmisc-3.2.0/Gmisc/src/Gmisc_lines.cpp | 11 Gmisc-3.2.0/Gmisc/tests/testthat/_snaps |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-deep-path.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-piped-unit-reference.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-pipeline-piped-ref.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-pipeline.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-reference-zero.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-single-box.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-subelement-connect.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-subelement-deep.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align_pipe.R | 2 Gmisc-3.2.0/Gmisc/tests/testthat/test-bezier-bench.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-boxGrob_move.R | 12 Gmisc-3.2.0/Gmisc/tests/testthat/test-boxGrob_spread.R | 269 ++-- Gmisc-3.2.0/Gmisc/tests/testthat/test-boxHeaderGrob.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-boxPropGrobs.R | 116 + Gmisc-3.2.0/Gmisc/tests/testthat/test-class-management.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-connectGrob-groups-firstbox.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-connectGrob-vignette-step1.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-connectGrob_N_centered.R | 4 Gmisc-3.2.0/Gmisc/tests/testthat/test-connectGrob_fan_in_center.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-connectGrob_fan_in_top.R | 2 Gmisc-3.2.0/Gmisc/tests/testthat/test-deprecated.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-docx_document.R | 2 Gmisc-3.2.0/Gmisc/tests/testthat/test-flowchart.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-getPval.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-getSvdMostInfluential.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-labelConnector.R | 2 Gmisc-3.2.0/Gmisc/tests/testthat/test-prAddEmptyVals.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-prFindSubelementTarget.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-prGetNpcSize.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-prGetNpcValue.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-prIsNestedListHelpers.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-prLineMidpoint.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-print-Gmisc_list_of_boxes.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-s3-api-design.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-setConnectorLabels.R | 2 Gmisc-3.2.0/Gmisc/tests/testthat/test-spread-horiz-endpoint.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-spread-move-deep-path.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-transitionPlot.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-vdiffr-connect.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-vdiffr.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-yaml_hmisc_helpers.R |only Gmisc-3.2.0/Gmisc/vignettes/Grid-based_flowcharts.Rmd | 452 +++++-- 125 files changed, 3799 insertions(+), 1827 deletions(-)
Title: Water Resources System Simulator
Description: Tools for constructing, simulating, and analyzing large-scale
water resources systems. The package provides functions to represent
system components such as reservoirs, aquifers, rivers, diversions,
and demand sites, and to simulate system behavior under Standard
Operating Policy. It also supports the development and evaluation
of water allocation strategies and hydropower operations within
integrated water resources systems.
Author: Rezgar Arabzadeh [aut, cre],
Parisa Aberi [aut],
Kaveh Panaghi [aut],
Shahab Araghinejad [aut],
Majid Montaseri [aut]
Maintainer: Rezgar Arabzadeh <rarabzad@uwaterloo.ca>
This is a re-admission after prior archival of version 3.1 dated 2022-05-29
Diff between WRSS versions 3.1 dated 2022-05-29 and 3.2 dated 2026-03-05
WRSS-3.1/WRSS/man/figures/Thumbs.db |only WRSS-3.2/WRSS/DESCRIPTION | 37 +- WRSS-3.2/WRSS/MD5 | 83 ++--- WRSS-3.2/WRSS/R/createAquifer.R | 2 WRSS-3.2/WRSS/R/createAquifer.base.R | 5 WRSS-3.2/WRSS/R/createAquifer.default.R | 16 - WRSS-3.2/WRSS/R/createDemandSite.R | 2 WRSS-3.2/WRSS/R/createDemandSite.base.R | 5 WRSS-3.2/WRSS/R/createDemandSite.default.R | 18 - WRSS-3.2/WRSS/R/createDiversion.R | 2 WRSS-3.2/WRSS/R/createDiversion.base.R | 5 WRSS-3.2/WRSS/R/createDiversion.default.R | 86 +++-- WRSS-3.2/WRSS/R/createJunction.R | 2 WRSS-3.2/WRSS/R/createJunction.base.R | 6 WRSS-3.2/WRSS/R/createJunction.default.R | 50 ++- WRSS-3.2/WRSS/R/createReservoir.R | 2 WRSS-3.2/WRSS/R/createReservoir.base.R | 5 WRSS-3.2/WRSS/R/createReservoir.default.R | 149 +++++---- WRSS-3.2/WRSS/R/createRiver.R | 2 WRSS-3.2/WRSS/R/createRiver.base.R | 5 WRSS-3.2/WRSS/R/createRiver.default.R | 94 +++-- WRSS-3.2/WRSS/inst/CITATION | 49 +-- WRSS-3.2/WRSS/man/WRSS-package.Rd | 412 +++++++++++++------------- WRSS-3.2/WRSS/man/addObjectToArea.Rd | 2 WRSS-3.2/WRSS/man/createAquifer.Rd | 3 WRSS-3.2/WRSS/man/createAquifer.base.Rd | 3 WRSS-3.2/WRSS/man/createAquifer.default.Rd | 4 WRSS-3.2/WRSS/man/createDemandSite.Rd | 5 WRSS-3.2/WRSS/man/createDemandSite.base.Rd | 5 WRSS-3.2/WRSS/man/createDemandSite.default.Rd | 6 WRSS-3.2/WRSS/man/createDiversion.Rd | 3 WRSS-3.2/WRSS/man/createDiversion.base.Rd | 3 WRSS-3.2/WRSS/man/createDiversion.default.Rd | 4 WRSS-3.2/WRSS/man/createJunction.Rd | 3 WRSS-3.2/WRSS/man/createJunction.base.Rd | 3 WRSS-3.2/WRSS/man/createJunction.default.Rd | 3 WRSS-3.2/WRSS/man/createReservoir.Rd | 4 WRSS-3.2/WRSS/man/createReservoir.base.Rd | 54 +-- WRSS-3.2/WRSS/man/createReservoir.default.Rd | 4 WRSS-3.2/WRSS/man/createRiver.Rd | 3 WRSS-3.2/WRSS/man/createRiver.base.Rd | 3 WRSS-3.2/WRSS/man/createRiver.default.Rd | 4 WRSS-3.2/WRSS/man/sim.Rd | 2 43 files changed, 654 insertions(+), 504 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Duncan Murdoch [aut, cre],
Daniel Adler [aut],
Oleg Nenadic [ctb],
Simon Urbanek [ctb],
Ming Chen [ctb],
Albrecht Gebhardt [ctb],
Ben Bolker [ctb],
Gabor Csardi [ctb],
Adam Strzelecki [ctb],
Alexander Senger [ctb],
The R Core Team [ctb, cph],
Dirk Ed [...truncated...]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rgl versions 1.3.34 dated 2026-02-02 and 1.3.36 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 26 +++---- NEWS.md | 5 + build/partial.rdb |binary inst/doc/WebGL.html | 26 +++---- inst/doc/demos.html | 88 ++++++++++++------------- inst/doc/deprecation.html | 4 - inst/doc/pkgdown.html | 6 - inst/doc/rgl.html | 50 +++++++------- inst/doc/transparency.html | 24 +++--- inst/htmlwidgets/lib/rglClass/rglClass.min.js | 6 - inst/htmlwidgets/lib/rglClass/shadersrc.src.js | 6 + man/shinyGetPar3d.Rd | 72 +++++++++++++------- src/Background.cpp | 6 - 14 files changed, 176 insertions(+), 149 deletions(-)
Title: Descriptive Statistics and Data Management Tools
Description: Extracts and summarizes metadata from data frames, including variable names, labels, types, and missing values. Computes compact descriptive statistics, frequency tables, and cross-tabulations to assist with efficient data exploration. Includes an interactive and exportable codebook generator for documenting variable metadata. Facilitates the identification of missing data patterns and structural issues in datasets. Designed to streamline initial data management and exploratory analysis workflows within 'R'.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.4.1 dated 2025-12-21 and 0.4.2 dated 2026-03-05
DESCRIPTION | 12 MD5 | 49 - NAMESPACE | 4 NEWS.md | 141 +-- R/code_book.R | 8 R/copy_clipboard.R | 21 R/count_n.R | 20 R/cramer_v.R | 22 R/cross_tab.R | 1275 +++++++++++++++++---------------- R/freq.R | 13 R/label_from_names.R | 4 R/mean_n.R | 39 - R/spicy-package.R | 2 R/sum_n.R | 39 - README.md | 74 - inst/CITATION | 25 man/cross_tab.Rd | 10 tests/testthat/test-copy_clipboard.R | 10 tests/testthat/test-count_n.R | 19 tests/testthat/test-cramer_v.R | 17 tests/testthat/test-cross_tab.R | 96 ++ tests/testthat/test-freq.R | 35 tests/testthat/test-label_from_names.R | 8 tests/testthat/test-mean_n.R | 26 tests/testthat/test-sum_n.R | 26 tools |only 26 files changed, 1154 insertions(+), 841 deletions(-)
Title: 'ggplot2'-Based Tools for Visualising DNA Sequences and
Modifications
Description: Uses 'ggplot2' to visualise either (a) a single DNA/RNA sequence split across multiple lines, (b) multiple DNA/RNA sequences, each occupying a whole line, or (c) base modifications such as DNA methylation called by modified bases models in Dorado or Guppy. Functions starting with visualise_<>() are the main plotting functions, and functions starting with extract_and_sort_<>() are key helper functions for reading files and reformatting data. Source code is available at <https://github.com/ejade42/ggDNAvis>, a full non-expert user guide is available at <https://ejade42.github.io/ggDNAvis/>, and an interactive web-app version of the software is available at <https://ejade42.github.io/ggDNAvis/articles/interactive_app.html>.
Author: Evelyn Jade [aut, cre, cph]
Maintainer: Evelyn Jade <evelynjade42@gmail.com>
Diff between ggDNAvis versions 0.3.2 dated 2025-10-31 and 1.0.0 dated 2026-03-05
ggDNAvis-0.3.2/ggDNAvis/man/convert_input_seq_to_sequence_list.Rd |only ggDNAvis-0.3.2/ggDNAvis/man/convert_sequences_to_annotations.Rd |only ggDNAvis-0.3.2/ggDNAvis/man/extract_methylation_from_dataframe.Rd |only ggDNAvis-0.3.2/ggDNAvis/man/figures/many_sequences_for_sticker.svg |only ggDNAvis-1.0.0/ggDNAvis/DESCRIPTION | 18 ggDNAvis-1.0.0/ggDNAvis/LICENSE | 2 ggDNAvis-1.0.0/ggDNAvis/MD5 | 272 ++ ggDNAvis-1.0.0/ggDNAvis/NAMESPACE | 34 ggDNAvis-1.0.0/ggDNAvis/NEWS.md | 134 + ggDNAvis-1.0.0/ggDNAvis/R/alias_maps.R |only ggDNAvis-1.0.0/ggDNAvis/R/dna_tools.R | 922 +++++++++ ggDNAvis-1.0.0/ggDNAvis/R/ggDNAvis-package.R | 260 ++ ggDNAvis-1.0.0/ggDNAvis/R/merge_with_metadata.R | 280 ++ ggDNAvis-1.0.0/ggDNAvis/R/parse_methylation_from_fastq.R | 403 ++-- ggDNAvis-1.0.0/ggDNAvis/R/visualise_many_sequences.R | 526 ++++- ggDNAvis-1.0.0/ggDNAvis/R/visualise_methylation.R | 940 ++++++++-- ggDNAvis-1.0.0/ggDNAvis/R/visualise_single_sequence.R | 564 ++---- ggDNAvis-1.0.0/ggDNAvis/R/zzz.R |only ggDNAvis-1.0.0/ggDNAvis/build |only ggDNAvis-1.0.0/ggDNAvis/data/sequence_col_palettes.rda |only ggDNAvis-1.0.0/ggDNAvis/data/sequence_color_palettes.rda |only ggDNAvis-1.0.0/ggDNAvis/data/sequence_colour_palettes.rda |binary ggDNAvis-1.0.0/ggDNAvis/inst/CITATION |only ggDNAvis-1.0.0/ggDNAvis/inst/doc |only ggDNAvis-1.0.0/ggDNAvis/inst/shinyapp |only ggDNAvis-1.0.0/ggDNAvis/man/bad_arg.Rd |only ggDNAvis-1.0.0/ggDNAvis/man/convert_MM_vector_to_locations.Rd | 2 ggDNAvis-1.0.0/ggDNAvis/man/convert_sequences_to_matrix.Rd |only ggDNAvis-1.0.0/ggDNAvis/man/example_many_sequences.Rd | 3 ggDNAvis-1.0.0/ggDNAvis/man/extract_and_sort_methylation.Rd |only ggDNAvis-1.0.0/ggDNAvis/man/extract_and_sort_sequences.Rd | 14 ggDNAvis-1.0.0/ggDNAvis/man/fastq_quality_scores.Rd | 3 ggDNAvis-1.0.0/ggDNAvis/man/figures/ggDNAvis.png |binary ggDNAvis-1.0.0/ggDNAvis/man/figures/ggDNAvis_detailed.png |only ggDNAvis-1.0.0/ggDNAvis/man/figures/ggDNAvis_medium.png |only 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Title: Regional and Multi-Regional Input-Output Data
Description: Provides Regional (Brazil, 2020) and Multi-Regional (World, 2000)
input-output matrices for R. This package serves as a data-only
companion to the 'fio' package, facilitating input-output analysis
by providing standardized R6 data objects.
Author: Alberson da Silva Miranda [aut, cre, cph] ,
Celso Bissoli Sessa [aut, dtc]
Maintainer: Alberson da Silva Miranda <albersonmiranda@hotmail.com>
Diff between fiodata versions 0.0.1 dated 2026-02-25 and 0.1.1 dated 2026-03-05
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 + NEWS.md | 4 ++++ R/br_2020.R | 3 ++- R/world_2000.R | 1 + 6 files changed, 18 insertions(+), 11 deletions(-)
Title: Biostatistics and Clinical Data Analysis
Description: Biostatistical and clinical data analysis, including descriptive
statistics, exploratory data analysis, sample size and power calculations,
statistical inference, and data visualization. Normality tests are
implemented following Mishra et al. (2019) <doi:10.4103/aca.ACA_157_18>,
omnibus test procedures are based on Blanca et al. (2017)
<doi:10.3758/s13428-017-0918-2> and Field et al. (2012, ISBN:9781446200469),
while sample size and power calculation methods follow Chow et al. (2017)
<doi:10.1201/9781315183084>.
Author: Sebastian Quirarte-Justo [aut, cre] ,
Angela Carolina Montano-Ruiz [aut] ,
Jose Maria Torres-Arellano [aut] ,
Laboratorios Sophia S.A. de C.V. [cph, fnd]
Maintainer: Sebastian Quirarte-Justo <sebastian.quirarte@sophia.com.mx>
Diff between biostats versions 1.1.1 dated 2025-12-16 and 1.1.2 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 18 ++-- NEWS.md | 10 ++ R/sample_size.R | 30 ++++--- R/sample_size_range.R | 50 +++++++----- README.md | 121 ++++++++++++++---------------- man/figures/README-unnamed-chunk-24-1.png |binary man/figures/README-unnamed-chunk-24-2.png |binary tests/testthat/test-sample_size.R | 7 - tests/testthat/test-sample_size_range.R | 8 - 10 files changed, 136 insertions(+), 114 deletions(-)
Title: Generate Random Data Sets
Description: Generates random data sets including: data.frames, lists,
and vectors.
Author: Tyler Rinker [aut, cre],
Josh O'Brien [ctb],
Ananda Mahto [ctb],
Matthew Sigal [ctb],
Jonathan Carroll [ctb],
Scott Westenberger [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between wakefield versions 0.3.6 dated 2020-09-13 and 0.3.9 dated 2026-03-05
wakefield-0.3.6/wakefield/NEWS |only wakefield-0.3.6/wakefield/man/plot.tbl_df.Rd |only wakefield-0.3.6/wakefield/man/wakefield.Rd |only wakefield-0.3.9/wakefield/DESCRIPTION | 11 wakefield-0.3.9/wakefield/MD5 | 441 +- wakefield-0.3.9/wakefield/NAMESPACE | 213 - wakefield-0.3.9/wakefield/R/age.R | 44 wakefield-0.3.9/wakefield/R/animal.R | 106 wakefield-0.3.9/wakefield/R/answer.R | 36 wakefield-0.3.9/wakefield/R/area.R | 38 wakefield-0.3.9/wakefield/R/as_integer.R | 74 wakefield-0.3.9/wakefield/R/car.R | 42 wakefield-0.3.9/wakefield/R/children.R | 40 wakefield-0.3.9/wakefield/R/coin.R | 36 wakefield-0.3.9/wakefield/R/color.R | 104 wakefield-0.3.9/wakefield/R/date_stamp.R | 104 wakefield-0.3.9/wakefield/R/death.R | 52 wakefield-0.3.9/wakefield/R/dice.R | 36 wakefield-0.3.9/wakefield/R/dna.R | 34 wakefield-0.3.9/wakefield/R/dob.R | 72 wakefield-0.3.9/wakefield/R/dummy.R | 50 wakefield-0.3.9/wakefield/R/education.R | 94 wakefield-0.3.9/wakefield/R/employment.R | 62 wakefield-0.3.9/wakefield/R/eye.R | 58 wakefield-0.3.9/wakefield/R/grade.R | 224 - wakefield-0.3.9/wakefield/R/grade_level.R | 34 wakefield-0.3.9/wakefield/R/group.R | 44 wakefield-0.3.9/wakefield/R/hair.R | 60 wakefield-0.3.9/wakefield/R/height.R | 108 wakefield-0.3.9/wakefield/R/hour.R | 44 wakefield-0.3.9/wakefield/R/id.R | 126 wakefield-0.3.9/wakefield/R/income.R | 58 wakefield-0.3.9/wakefield/R/internet_browser.R | 104 wakefield-0.3.9/wakefield/R/interval.R | 82 wakefield-0.3.9/wakefield/R/iq.R | 44 wakefield-0.3.9/wakefield/R/language.R | 56 wakefield-0.3.9/wakefield/R/level.R | 126 wakefield-0.3.9/wakefield/R/likert.R | 76 wakefield-0.3.9/wakefield/R/lorem_ipsum.R | 82 wakefield-0.3.9/wakefield/R/marital.R | 38 wakefield-0.3.9/wakefield/R/military.R | 62 wakefield-0.3.9/wakefield/R/minute.R | 48 wakefield-0.3.9/wakefield/R/month.R | 46 wakefield-0.3.9/wakefield/R/name.R | 46 wakefield-0.3.9/wakefield/R/normal.R | 144 wakefield-0.3.9/wakefield/R/peek.R | 144 wakefield-0.3.9/wakefield/R/political.R | 96 wakefield-0.3.9/wakefield/R/probs.R | 44 wakefield-0.3.9/wakefield/R/r_data.R | 189 - wakefield-0.3.9/wakefield/R/r_data_frame.R | 272 - wakefield-0.3.9/wakefield/R/r_dummy.R | 78 wakefield-0.3.9/wakefield/R/r_insert.R | 70 wakefield-0.3.9/wakefield/R/r_list.R | 206 - wakefield-0.3.9/wakefield/R/r_na.R | 108 wakefield-0.3.9/wakefield/R/r_sample.R | 46 wakefield-0.3.9/wakefield/R/r_sample_binary.R | 80 wakefield-0.3.9/wakefield/R/r_sample_factor.R | 54 wakefield-0.3.9/wakefield/R/r_sample_integer.R | 32 wakefield-0.3.9/wakefield/R/r_sample_logical.R | 42 wakefield-0.3.9/wakefield/R/r_sample_ordered.R | 66 wakefield-0.3.9/wakefield/R/r_sample_replace.R | 60 wakefield-0.3.9/wakefield/R/r_series.R | 256 - wakefield-0.3.9/wakefield/R/race.R | 68 wakefield-0.3.9/wakefield/R/relate.R | 144 wakefield-0.3.9/wakefield/R/religion.R | 122 wakefield-0.3.9/wakefield/R/sat.R | 44 wakefield-0.3.9/wakefield/R/second.R | 48 wakefield-0.3.9/wakefield/R/sentence.R | 40 wakefield-0.3.9/wakefield/R/seriesname.R | 40 wakefield-0.3.9/wakefield/R/sex.R | 70 wakefield-0.3.9/wakefield/R/sex_inclusive.R | 84 wakefield-0.3.9/wakefield/R/smokes.R | 36 wakefield-0.3.9/wakefield/R/speed.R | 106 wakefield-0.3.9/wakefield/R/state.R | 160 - wakefield-0.3.9/wakefield/R/string.R | 56 wakefield-0.3.9/wakefield/R/table_heat.R | 265 - wakefield-0.3.9/wakefield/R/time_stamp.R | 50 wakefield-0.3.9/wakefield/R/upper.R | 150 wakefield-0.3.9/wakefield/R/utils.R | 84 wakefield-0.3.9/wakefield/R/valid.R | 32 wakefield-0.3.9/wakefield/R/variables.R | 244 - wakefield-0.3.9/wakefield/R/varname.R | 82 wakefield-0.3.9/wakefield/R/wakefield-package.R | 225 - wakefield-0.3.9/wakefield/R/year.R | 50 wakefield-0.3.9/wakefield/R/zip_code.R | 56 wakefield-0.3.9/wakefield/README.md | 1534 +++++----- wakefield-0.3.9/wakefield/inst/CITATION | 31 wakefield-0.3.9/wakefield/man/age.Rd | 6 wakefield-0.3.9/wakefield/man/animal.Rd | 6 wakefield-0.3.9/wakefield/man/answer.Rd | 6 wakefield-0.3.9/wakefield/man/area.Rd | 6 wakefield-0.3.9/wakefield/man/car.Rd | 6 wakefield-0.3.9/wakefield/man/children.Rd | 6 wakefield-0.3.9/wakefield/man/coin.Rd | 6 wakefield-0.3.9/wakefield/man/color.Rd | 4 wakefield-0.3.9/wakefield/man/date_stamp.Rd | 6 wakefield-0.3.9/wakefield/man/death.Rd | 6 wakefield-0.3.9/wakefield/man/dice.Rd | 6 wakefield-0.3.9/wakefield/man/dna.Rd | 6 wakefield-0.3.9/wakefield/man/dob.Rd | 6 wakefield-0.3.9/wakefield/man/dummy.Rd | 6 wakefield-0.3.9/wakefield/man/education.Rd | 6 wakefield-0.3.9/wakefield/man/employment.Rd | 6 wakefield-0.3.9/wakefield/man/eye.Rd | 6 wakefield-0.3.9/wakefield/man/grade.Rd | 4 wakefield-0.3.9/wakefield/man/grade_level.Rd | 4 wakefield-0.3.9/wakefield/man/group.Rd | 6 wakefield-0.3.9/wakefield/man/hair.Rd | 6 wakefield-0.3.9/wakefield/man/height.Rd | 6 wakefield-0.3.9/wakefield/man/income.Rd | 6 wakefield-0.3.9/wakefield/man/internet_browser.Rd | 6 wakefield-0.3.9/wakefield/man/iq.Rd | 6 wakefield-0.3.9/wakefield/man/language.Rd | 6 wakefield-0.3.9/wakefield/man/letter.Rd | 6 wakefield-0.3.9/wakefield/man/level.Rd | 8 wakefield-0.3.9/wakefield/man/likert.Rd | 6 wakefield-0.3.9/wakefield/man/lorem_ipsum.Rd | 6 wakefield-0.3.9/wakefield/man/marital.Rd | 6 wakefield-0.3.9/wakefield/man/military.Rd | 6 wakefield-0.3.9/wakefield/man/month.Rd | 6 wakefield-0.3.9/wakefield/man/name.Rd | 6 wakefield-0.3.9/wakefield/man/normal.Rd | 6 wakefield-0.3.9/wakefield/man/peek.Rd | 2 wakefield-0.3.9/wakefield/man/plot.as_tibble.Rd |only wakefield-0.3.9/wakefield/man/political.Rd | 6 wakefield-0.3.9/wakefield/man/r_data.Rd | 7 wakefield-0.3.9/wakefield/man/r_data_frame.Rd | 4 wakefield-0.3.9/wakefield/man/r_dummy.Rd | 2 wakefield-0.3.9/wakefield/man/r_series.Rd | 4 wakefield-0.3.9/wakefield/man/race.Rd | 6 wakefield-0.3.9/wakefield/man/relate.Rd | 2 wakefield-0.3.9/wakefield/man/religion.Rd | 8 wakefield-0.3.9/wakefield/man/sat.Rd | 6 wakefield-0.3.9/wakefield/man/sentence.Rd | 6 wakefield-0.3.9/wakefield/man/sex.Rd | 4 wakefield-0.3.9/wakefield/man/sex_inclusive.Rd | 4 wakefield-0.3.9/wakefield/man/smokes.Rd | 6 wakefield-0.3.9/wakefield/man/speed.Rd | 6 wakefield-0.3.9/wakefield/man/state.Rd | 6 wakefield-0.3.9/wakefield/man/string.Rd | 6 wakefield-0.3.9/wakefield/man/table_heat.Rd | 2 wakefield-0.3.9/wakefield/man/valid.Rd | 6 wakefield-0.3.9/wakefield/man/wakefield-package.Rd |only wakefield-0.3.9/wakefield/man/year.Rd | 6 wakefield-0.3.9/wakefield/man/zip_code.Rd | 6 wakefield-0.3.9/wakefield/tests/testthat.R | 6 wakefield-0.3.9/wakefield/tests/testthat/test-age.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-animal.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-answer.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-area.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-as_integer.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-browser.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-car.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-children.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-coin.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-color.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-data_stamp.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-death.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-dice.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-dna.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-dob.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-dummy.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-education.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-employment.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-eye.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-grade.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-grade_level.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-group.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-hair.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-height.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-hour.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-id.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-income.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-interval.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-iq.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-language.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-level.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-likert.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-lorem_ipsum.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-marital.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-military.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-minute.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-month.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-name.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-normal.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-peek.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-political.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-probs.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_data.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_data_frame.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_dummy.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_insert.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_list.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_na.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample_binary.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample_factor.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample_integer.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample_logical.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample_ordered.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample_replace.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_series.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-race.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-relate.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-religion.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-sat.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-second.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-sentence.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-seriesname.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-sex.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-sex_inclusive.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-smokes.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-speed.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-state.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-string.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-table_heat.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-time_stamp.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-upper.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-valid.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-variables.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-varname.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-year.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-zip_code.R | 14 wakefield-0.3.9/wakefield/tools/wakefield_logo/resize_icon.txt | 2 224 files changed, 5236 insertions(+), 5224 deletions(-)
Title: Functions to Help in your Coding Etiquette
Description: Adds some functions to help in your coding etiquette.
'tinycodet' primarily focuses on 4 aspects.
1) Safer decimal (in)equality testing,
standard-evaluated alternatives to with() and aes(),
and other functions for safer coding.
2) A new package import system,
that attempts to combine the benefits of using a package without attaching it,
with the benefits of attaching a package.
3) Extending the string manipulation capabilities of the 'stringi' R package.
4) Reducing repetitive code.
Besides linking to 'Rcpp', 'tinycodet' has only one other dependency, namely 'stringi'.
Author: Tony Wilkes [aut, cre, cph]
Maintainer: Tony Wilkes <tony_a_wilkes@outlook.com>
Diff between tinycodet versions 0.6.0 dated 2026-02-15 and 0.6.2 dated 2026-03-05
DESCRIPTION | 8 MD5 | 132 +- NEWS.md | 4 R/aaa2_tinycodet_import.R | 11 R/import_as.R | 2 R/import_data.R | 2 R/import_helper.R | 3 R/import_inops.R | 2 R/import_misc.R | 7 R/internal_functions.R | 17 inst/tinytest/import/test-import_general.R | 34 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/NAMESPACE | 16 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/R/tinycodetfakepkg1 | 54 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/NAMESPACE | 16 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/NAMESPACE | 24 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/R/tinycodetfakepkg3 | 54 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg4/NAMESPACE | 6 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg4/R/tinycodetfakepkg4 | 54 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg4/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg5/NAMESPACE | 8 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg5/R/tinycodetfakepkg5 | 54 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg5/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/NAMESPACE | 24 inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/R/tinycodetfakepkg3 | 54 inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/NAMESPACE | 16 inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/R/tinycodetfakepkg1 | 54 inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/NAMESPACE | 16 inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/html/R.css | 260 +-- inst/tinytest/special/fakelibs/newlib/tinycodetfakepkg1/NAMESPACE | 16 inst/tinytest/special/fakelibs/newlib/tinycodetfakepkg1/R/tinycodetfakepkg1 | 54 inst/tinytest/special/fakelibs/newlib/tinycodetfakepkg1/html/R.css | 260 +-- man/aaa0_tinycodet_help.Rd | 120 - man/aaa1_tinycodet_safer.Rd | 66 - man/aaa2_tinycodet_import.Rd | 369 ++--- man/aaa3_tinycodet_strings.Rd | 164 +- man/aaa4_tinycodet_dry.Rd | 72 - man/aaa5_tinycodet_misc.Rd | 34 man/decimal_truth.Rd | 312 ++-- man/import_as.Rd | 364 ++--- man/import_data.Rd | 78 - man/import_helper.Rd | 259 +-- man/import_inops.Rd | 244 +-- man/import_inops.control.Rd | 156 +- man/import_misc.Rd | 232 +-- man/lock.Rd | 174 +- man/logic_ops.Rd | 242 +-- man/matrix_ops.Rd | 142 +- man/pkgs.Rd | 320 ++-- man/pro.Rd | 210 +-- man/pversion.Rd | 130 - man/reexports.Rd | 36 man/report_inops.Rd | 92 - man/s_pattern.Rd | 324 ++-- man/safer_partialmatch.Rd | 88 - man/source_selection.Rd | 198 +-- man/str_arithmetic.Rd | 232 +-- man/str_search.Rd | 652 +++++----- man/str_subset_ops.Rd | 182 +- man/strcut.Rd | 254 +-- man/stri_join_mat.Rd | 204 +-- man/stri_locate_ith.Rd | 616 ++++----- man/transform_if.Rd | 172 +- 67 files changed, 4950 insertions(+), 4870 deletions(-)
Title: Scientific Analysis of Trial Errors (SATE)
Description: Bundles functions used to analyze the harmfulness of trial errors in criminal trials.
Functions in the Scientific Analysis of Trial Errors ('sate') package help users estimate the
probability that a jury will find a defendant guilty given jurors' preferences for a guilty
verdict and the uncertainty of that estimate. Users can also compare actual and hypothetical
trial conditions to conduct harmful error analysis. The conceptual framework is discussed
by Barry Edwards, A Scientific Framework for Analyzing the Harmfulness of Trial Errors,
UCLA Criminal Justice Law Review (2024) <doi:10.5070/CJ88164341> and Barry Edwards,
If The Jury Only Knew: The Effect Of Omitted Mitigation Evidence On The Probability Of A Death Sentence,
Virginia Journal of Social Policy & the Law (2025)
<https://vasocialpolicy.org/wp-content/uploads/2025/05/Edwards-If-The-Jury-Only-Knew.pdf>.
The relationship between individual jurors'
verdict preferences and the probability that a jury returns a guil [...truncated...]
Author: Barry Edwards [aut, cre]
Maintainer: Barry Edwards <bce@uga.edu>
Diff between sate versions 3.1.0 dated 2025-11-05 and 3.1.1 dated 2026-03-05
DESCRIPTION | 8 MD5 | 78 ++++---- NEWS.md | 16 + R/as.jury.point.r | 104 +++++++++-- R/as.jury.stats.r | 106 ++++++++---- R/basic.plot.grid.R | 8 R/compare.juror.stats.R | 24 +- R/compare.jury.stats.r | 106 ++++++++---- R/deliberate.civil.r | 27 +-- R/deliberate.r | 26 +- R/encode.cloud.respondent.variables.R | 40 ++++ R/get_pG_by_k.r | 20 +- R/graph.effect.defendant.r | 115 +++++++------ R/graph.estimate.r | 68 ++++--- R/helper.functions.r | 270 ++++++++++++++++++++++++++----- R/prob.ordered.verdicts.R | 18 +- R/prob_ord_from_pool.R | 72 ++++++-- R/select.with.strikes.r | 15 - R/sim.as.jury.stats.r | 104 +++++------ R/sim.compare.jury.stats.r | 36 ++-- R/transition.matrix.R | 8 R/transition.matrix.ordered.R | 65 ++++--- R/weights_for_population.R | 142 +++++++++++++--- man/as.jury.point.Rd | 12 + man/as.jury.stats.Rd | 14 + man/basic.plot.grid.Rd | 8 man/compare.jury.stats.Rd | 10 + man/deliberate.Rd | 4 man/deliberate.civil.Rd | 4 man/encode.cloud.respondent.variables.Rd | 4 man/get_pG_by_k.Rd | 2 man/graph.effect.defendant.Rd | 9 - man/graph.estimate.Rd | 9 - man/prob_ord_from_pool.Rd | 6 man/sim.as.jury.stats.Rd | 6 man/sim.compare.jury.stats.Rd | 4 man/transition.matrix.ordered.Rd | 20 +- man/weights_for_population.Rd | 10 - tests |only 39 files changed, 1128 insertions(+), 470 deletions(-)
Title: Multivariate Generalized Gaussian Distribution, Multivariate t
Distribution, Multivariate Cauchy Distribution, Statistical
Divergence
Description: Multivariate generalized Gaussian distribution,
Multivariate Cauchy distribution,
Multivariate t distribution.
Distance between two distributions (see N. Bouhlel and A. Dziri (2019): <doi:10.1109/LSP.2019.2915000>,
N. Bouhlel and D. Rousseau (2022): <doi:10.3390/e24060838>,
N. Bouhlel and D. Rousseau (2023): <doi:10.1109/LSP.2023.3324594>).
Manipulation of these multivariate probability distributions.
This package replaces 'mggd', 'mcauchyd' and 'mstudentd'.
Author: Pierre Santagostini [aut, cre],
Nizar Bouhlel [aut]
Maintainer: Pierre Santagostini <pierre.santagostini@institut-agro.fr>
Diff between multvardiv versions 1.0.14 dated 2026-01-27 and 1.0.15 dated 2026-03-05
DESCRIPTION | 10 ++++++---- MD5 | 4 ++-- NEWS.md | 8 ++++++++ 3 files changed, 16 insertions(+), 6 deletions(-)
Title: Easy Visualization of Conditional Effects from Regression Models
Description: Offers a flexible and user-friendly interface for visualizing conditional
effects from a broad range of regression models, including mixed-effects and generalized
additive (mixed) models. Compatible model types include lm(), rlm(), glm(), glm.nb(),
betareg(), and gam() (from 'mgcv'); nonlinear models via nls(); generalized least
squares via gls(); and survival models via coxph() (from 'survival').
Mixed-effects models with random intercepts and/or slopes can be fitted using lmer(),
glmer(), glmer.nb(), glmmTMB(), or gam() (from 'mgcv', via smooth terms).
Plots are rendered using base R graphics with extensive customization options.
Approximate confidence intervals for nls() and betareg() models are computed using
the delta method. Robust standard errors for rlm() are computed using the sandwich
estimator (Zeileis 2004) <doi:10.18637/jss.v011.i10>. For beta regression using
'betareg', see Cribari-Neto and Zeileis (2010) <doi:10.18637/jss.v034.i02>. For
mixed-effects models w [...truncated...]
Author: Luca Corlatti [aut, cre]
Maintainer: Luca Corlatti <lucac1980@yahoo.it>
Diff between easyViz versions 2.0.2 dated 2026-02-25 and 2.1.0 dated 2026-03-05
DESCRIPTION | 12 +- MD5 | 16 +-- NEWS.md | 24 ++++ R/easyViz.R | 259 ++++++++++++++++++++++++++++++--------------------- R/ez-backtransform.R | 145 +++++++++++++++------------- R/ez-build-output.R | 15 ++ R/ez-prepare-data.R | 14 +- R/ez-utils.R | 58 +++++++---- man/easyViz.Rd | 184 +++++++++++++++++++++++------------- 9 files changed, 449 insertions(+), 278 deletions(-)
Title: Leakage-Safe Modeling and Auditing for Genomic and Clinical Data
Description: Prevents and detects information leakage in biomedical machine learning.
Provides leakage-resistant split policies (subject-grouped, batch-blocked, study leave-out, time-ordered),
guarded preprocessing (train-only imputation, normalization, filtering, feature selection),
cross-validated fitting with common learners, permutation-gap auditing, batch and fold association tests,
and duplicate detection.
Author: Selcuk Korkmaz [aut, cre]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between bioLeak versions 0.2.0 dated 2026-02-11 and 0.3.0 dated 2026-03-05
DESCRIPTION | 8 MD5 | 95 NAMESPACE | 4 NEWS.md | 52 R/audit.R | 294 ++ R/audit_report.R | 3 R/benchmark_suite.R |only R/classes.R | 3 R/conditions.R |only R/cv_uncertainty.R |only R/diagnostics_extra.R | 9 R/fit_resample.R | 139 + R/guard_to_recipe.R |only R/guards.R | 20 R/make_split_plan.R | 331 ++ R/permute_labels.R | 31 R/provenance.R |only R/simulate_suite.R | 4 R/summary.R | 12 R/tidymodels.R | 123 + R/tune_resample.R | 145 - README.md | 3 build/vignette.rds |binary inst/doc/bioLeak-intro.R | 97 inst/doc/bioLeak-intro.Rmd | 249 ++ inst/doc/bioLeak-intro.html | 2986 +++++++++++++++------------ inst/reports/audit_report.Rmd | 142 + man/LeakClasses.Rd | 3 man/audit_leakage.Rd | 44 man/audit_leakage_by_learner.Rd | 5 man/audit_report.Rd | 3 man/benchmark_leakage_suite.Rd |only man/check_split_overlap.Rd |only man/cv_ci.Rd |only man/dot-bio_capture_provenance.Rd |only man/dot-nb_corrected_var.Rd |only man/fit_resample.Rd | 4 man/guard_to_recipe.Rd |only man/make_split_plan.Rd | 27 man/simulate_leakage_suite.Rd | 2 man/tune_resample.Rd | 8 tests/testthat/helper-fixtures.R | 4 tests/testthat/test-audit-diagnostics.R | 52 tests/testthat/test-audit-report-expanded.R |only tests/testthat/test-benchmark-suite.R |only tests/testthat/test-check-split-overlap.R |only tests/testthat/test-combined-splits.R |only tests/testthat/test-condition-classes.R |only tests/testthat/test-cv-uncertainty.R |only tests/testthat/test-failure-mode-messaging.R |only tests/testthat/test-guard-to-recipe.R |only tests/testthat/test-invariants.R |only tests/testthat/test-n-axis-constraints.R |only tests/testthat/test-plotting.R | 159 - tests/testthat/test-provenance.R |only tests/testthat/test-scalability-threshold.R |only tests/testthat/test-strict-mode.R |only tests/testthat/test-tidymodels-interop.R | 175 - tests/testthat/test-tune-resample.R | 158 + tests/testthat/test-validation-policy.R |only vignettes/bioLeak-intro.Rmd | 249 ++ 61 files changed, 3927 insertions(+), 1716 deletions(-)
More information about APCinteraction at CRAN
Permanent link
Title: Linear Mixed-Effects Models using 'Eigen' and S4
Description: Fit linear and generalized linear mixed-effects models. The
models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using
the 'Eigen' C++ library for numerical linear algebra and
'RcppEigen' "glue".
Author: Douglas Bates [aut] ,
Martin Maechler [aut] ,
Ben Bolker [cre, aut] ,
Steven Walker [aut] ,
Rune Haubo Bojesen Christensen [ctb] ,
Henrik Singmann [ctb] ,
Bin Dai [ctb],
Fabian Scheipl [ctb] ,
Gabor Grothendieck [ctb],
Peter Green [ctb] ,
John Fox [c [...truncated...]
Maintainer: Ben Bolker <bbolker+lme4@gmail.com>
Diff between lme4 versions 1.1-38 dated 2025-12-02 and 2.0-1 dated 2026-03-05
lme4-1.1-38/lme4/man/cbpp2.Rd |only lme4-1.1-38/lme4/vignettes/downstream_methods.html |only lme4-2.0-1/lme4/DESCRIPTION | 110 + lme4-2.0-1/lme4/MD5 | 130 +- lme4-2.0-1/lme4/NAMESPACE | 46 lme4-2.0-1/lme4/R/AllClass.R | 2 lme4-2.0-1/lme4/R/VarCorr.R |only lme4-2.0-1/lme4/R/allFit.R | 45 lme4-2.0-1/lme4/R/bootMer.R | 53 lme4-2.0-1/lme4/R/checkConv.R | 8 lme4-2.0-1/lme4/R/covariance.R |only lme4-2.0-1/lme4/R/lmer.R | 568 +++------- lme4-2.0-1/lme4/R/methods.R | 55 lme4-2.0-1/lme4/R/modular.R | 353 ++++-- lme4-2.0-1/lme4/R/predict.R | 112 + lme4-2.0-1/lme4/R/profile.R | 242 ++-- lme4-2.0-1/lme4/R/reformulas_imports.R | 7 lme4-2.0-1/lme4/R/utilities.R | 94 + lme4-2.0-1/lme4/R/vcconv.R | 2 lme4-2.0-1/lme4/R/zzz.R | 15 lme4-2.0-1/lme4/build/partial.rdb |binary lme4-2.0-1/lme4/build/vignette.rds |binary lme4-2.0-1/lme4/inst/NEWS.Rd | 287 +++-- lme4-2.0-1/lme4/inst/doc/PLSvGLS.pdf |binary lme4-2.0-1/lme4/inst/doc/Theory.pdf |binary lme4-2.0-1/lme4/inst/doc/autoscale.html | 5 lme4-2.0-1/lme4/inst/doc/covariance_structures.R |only lme4-2.0-1/lme4/inst/doc/covariance_structures.Rmd |only lme4-2.0-1/lme4/inst/doc/covariance_structures.html |only lme4-2.0-1/lme4/inst/doc/lmer.R | 348 ++++++ lme4-2.0-1/lme4/inst/doc/lmer.pdf |binary lme4-2.0-1/lme4/inst/testdata/Contraception.rds |only lme4-2.0-1/lme4/inst/testdata/test-covariance_structures_data.R |only lme4-2.0-1/lme4/inst/testdata/test-covariance_structures_data.rds |only lme4-2.0-1/lme4/man/Covariance-class.Rd |only lme4-2.0-1/lme4/man/VarCorr.Rd | 43 lme4-2.0-1/lme4/man/allFit.Rd | 15 lme4-2.0-1/lme4/man/cbpp.Rd | 43 lme4-2.0-1/lme4/man/checkConv.Rd | 5 lme4-2.0-1/lme4/man/confint.merMod.Rd | 6 lme4-2.0-1/lme4/man/devfun2.Rd | 13 lme4-2.0-1/lme4/man/getDoublevertDefault.Rd |only lme4-2.0-1/lme4/man/getME.Rd | 19 lme4-2.0-1/lme4/man/getReCovs.Rd |only lme4-2.0-1/lme4/man/glmer.Rd | 29 lme4-2.0-1/lme4/man/influence.merMod.Rd | 20 lme4-2.0-1/lme4/man/isNewMerMod.Rd |only lme4-2.0-1/lme4/man/isSingular.Rd | 13 lme4-2.0-1/lme4/man/lmer.Rd | 118 +- lme4-2.0-1/lme4/man/mkVarCorr.Rd | 37 lme4-2.0-1/lme4/man/modular.Rd | 8 lme4-2.0-1/lme4/man/nlmer.Rd | 2 lme4-2.0-1/lme4/man/reformulas_imports.Rd | 5 lme4-2.0-1/lme4/man/utilities.Rd | 22 lme4-2.0-1/lme4/src/predModule.cpp | 2 lme4-2.0-1/lme4/tests/bootMer.R | 2 lme4-2.0-1/lme4/tests/confint.R | 1 lme4-2.0-1/lme4/tests/profile-tst.R | 2 lme4-2.0-1/lme4/tests/testthat/setup.R |only lme4-2.0-1/lme4/tests/testthat/test-allFit.R | 2 lme4-2.0-1/lme4/tests/testthat/test-covariance_nlmer.R |only lme4-2.0-1/lme4/tests/testthat/test-covariance_structures.R |only lme4-2.0-1/lme4/tests/testthat/test-doubleVertNotation.R | 33 lme4-2.0-1/lme4/tests/testthat/test-formulaEval.R | 7 lme4-2.0-1/lme4/tests/testthat/test-glmer.R | 5 lme4-2.0-1/lme4/tests/testthat/test-isSingular.R |only lme4-2.0-1/lme4/tests/testthat/test-lmer.R | 22 lme4-2.0-1/lme4/tests/testthat/test-methods.R | 157 +- lme4-2.0-1/lme4/tests/testthat/test-predict.R | 39 lme4-2.0-1/lme4/tests/testthat/test-reformulas-import.R | 5 lme4-2.0-1/lme4/tests/testthat/test-resids.R | 17 lme4-2.0-1/lme4/tests/testthat/test-start.R | 6 lme4-2.0-1/lme4/tests/testthat/test-summary_testlevel_1.rda |binary lme4-2.0-1/lme4/tests/testthat/test-weights.R |only lme4-2.0-1/lme4/vignettes/covariance_structures.Rmd |only lme4-2.0-1/lme4/vignettes/lmer.bib | 47 76 files changed, 1995 insertions(+), 1232 deletions(-)
Title: Tidy Intensive Longitudinal Data Analysis
Description: An opinionated, tidyverse-native toolkit for intensive longitudinal
data (ILD). Encodes time structure, enforces within-between decomposition,
provides spacing-aware lags, and integrates diagnostics and visualization.
Use ild_prepare(), ild_center(), ild_lag(), and related functions for a
unified pipeline from raw EMA/diary data to interpretable models.
Author: Alex Litovchenko [aut, cre]
Maintainer: Alex Litovchenko <al4877@columbia.edu>
Diff between tidyILD versions 0.0.1 dated 2026-02-13 and 0.2.0 dated 2026-03-05
DESCRIPTION | 24 +- MD5 | 133 ++++++++++----- NAMESPACE | 22 ++ NEWS.md | 9 + R/ild-class.R | 71 +++++++- R/ild_acf.R |only R/ild_align.R |only R/ild_center.R | 32 ++- R/ild_check_lags.R | 26 +- R/ild_circadian.R |only R/ild_crosslag.R |only R/ild_decomposition.R |only R/ild_design_check.R |only R/ild_diagnostics.R | 245 +++++++++++++++++++--------- R/ild_lag.R | 31 +++ R/ild_lme.R | 86 +++++++++ R/ild_missing_bias.R |only R/ild_missing_pattern.R | 68 ++++++- R/ild_model_tidiers.R |only R/ild_person_model.R |only R/ild_plot.R | 123 +++++++++----- R/ild_power.R |only R/ild_simulate.R | 45 ++++- R/ild_spacing.R |only R/ild_summary.R | 38 +++- R/package.R |only README.md | 44 ++++- build/vignette.rds |binary inst/doc/ild-analysis-report.R |only inst/doc/ild-analysis-report.Rmd |only inst/doc/ild-analysis-report.html |only inst/doc/ild-decomposition-and-spacing.html | 4 inst/doc/ild-glossary-and-quickstart.html | 4 inst/doc/tidyILD-workflow.R | 8 inst/doc/tidyILD-workflow.Rmd | 8 inst/doc/tidyILD-workflow.html | 125 +++++++++----- man/as_ild.Rd | 4 man/augment_ild_model.Rd |only man/ild_acf.Rd |only man/ild_align.Rd |only man/ild_center.Rd | 18 +- man/ild_center_plot.Rd |only man/ild_check_lags.Rd | 7 man/ild_circadian.Rd |only man/ild_crosslag.Rd |only man/ild_decomposition.Rd |only man/ild_design_check.Rd |only man/ild_diagnostics.Rd | 41 ++++ man/ild_heatmap.Rd |only man/ild_lag.Rd | 12 - man/ild_lme.Rd | 25 ++ man/ild_missing_bias.Rd |only man/ild_missing_pattern.Rd | 24 +- man/ild_person_distribution.Rd |only man/ild_person_model.Rd |only man/ild_plot.Rd | 21 +- man/ild_power.Rd |only man/ild_simulate.Rd | 33 ++- man/ild_spacing.Rd |only man/ild_spaghetti.Rd |only man/ild_summary.Rd | 7 man/plot_ild_diagnostics.Rd |only man/tidyILD-package.Rd |only man/tidy_ild_model.Rd |only man/validate_ild.Rd | 3 tests/testthat/test-ild-class.R | 3 tests/testthat/test-ild-contract.R |only tests/testthat/test-ild_acf.R |only tests/testthat/test-ild_align.R |only tests/testthat/test-ild_center.R | 15 + tests/testthat/test-ild_check_lags.R | 14 + tests/testthat/test-ild_circadian.R |only tests/testthat/test-ild_crosslag.R |only tests/testthat/test-ild_decomposition.R |only tests/testthat/test-ild_design_check.R |only tests/testthat/test-ild_diagnostics_plot.R | 87 +++++++++ tests/testthat/test-ild_lag.R | 11 + tests/testthat/test-ild_lag_time_window.R | 12 + tests/testthat/test-ild_lme.R | 72 ++++++++ tests/testthat/test-ild_manifest.R | 2 tests/testthat/test-ild_missing_bias.R |only tests/testthat/test-ild_missing_pattern.R | 17 + tests/testthat/test-ild_model_tidiers.R |only tests/testthat/test-ild_person_model.R |only tests/testthat/test-ild_power.R |only tests/testthat/test-ild_prepare.R | 22 ++ tests/testthat/test-ild_simulate.R |only tests/testthat/test-ild_spacing.R |only tests/testthat/test-ild_summary.R | 4 vignettes/ild-analysis-report.Rmd |only vignettes/tidyILD-workflow.Rmd | 8 91 files changed, 1253 insertions(+), 355 deletions(-)
Title: Semiparametric Likelihood Estimation with Errors in Variables
Description: Efficient regression analysis under general two-phase sampling, where Phase I includes error-prone data and Phase II contains validated data on a subset.
Author: Sarah Lotspeich [aut],
Ran Tao [aut, cre],
Joey Sherrill [prg],
Jiangmei Xiong [ctb],
Shawn Garbett [prg]
Maintainer: Ran Tao <r.tao@vanderbilt.edu>
Diff between sleev versions 1.1.6 dated 2025-11-17 and 1.2.0 dated 2026-03-05
DESCRIPTION | 20 - MD5 | 24 - NAMESPACE | 1 R/RcppExports.R | 12 R/logistic2ph.R | 631 +++++++++++++++------------------------ R/observed_data_loglik.R | 132 +++----- R/pl_theta.R | 101 +++--- R/profile_out.R | 250 +++------------ inst/doc/sleev_vignette_file.pdf |binary man/logistic2ph.Rd | 2 src/RcppExports.cpp | 82 +++++ src/logistic2ph_em_loop.cpp |only src/observed_data_loglik.cpp |only src/profile_out_em.cpp |only src/sleev_api.h |only 15 files changed, 557 insertions(+), 698 deletions(-)
Title: Shiny Matrix Input Field
Description: Implements a custom matrix input field.
Author: Andreas Neudecker [aut, cre]
Maintainer: Andreas Neudecker <andreas.neudecker@inwt-statistics.de>
Diff between shinyMatrix versions 0.8.0 dated 2024-04-10 and 0.8.1 dated 2026-03-05
DESCRIPTION | 20 ++++++++++++-------- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/matrixInput.R | 2 +- README.md | 8 ++++---- 5 files changed, 25 insertions(+), 17 deletions(-)
Title: Efficient Computation and Testing of the Bergsma-Dassios Sign
Covariance
Description: Computes the t* statistic corresponding to the tau* population
coefficient introduced by Bergsma and Dassios (2014) <DOI:10.3150/13-BEJ514>
and does so in O(n^2) time following the algorithm of Heller and
Heller (2016) <DOI:10.48550/arXiv.1605.08732> building off of the work of Weihs,
Drton, and Leung (2016) <DOI:10.1007/s00180-015-0639-x>. Also allows for
independence testing using the asymptotic distribution of t* as described by
Nandy, Weihs, and Drton (2016) <DOI:10.1214/16-EJS1166>.
Author: Luca Weihs [aut],
Emin Martinian [ctb] ,
Julian D. Karch [cre]
Maintainer: Julian D. Karch <j.d.karch@fsw.leidenuniv.nl>
Diff between TauStar versions 1.1.8 dated 2025-08-25 and 1.1.9 dated 2026-03-05
DESCRIPTION | 7 +++---- MD5 | 6 +++--- NEWS.md | 2 ++ src/RcppExports.cpp | 26 +++++++++++++------------- 4 files changed, 21 insertions(+), 20 deletions(-)
Title: External jars for 'rjdverse' R Packages
Description: It provides external jars required for the 'rjdverse' (as 'rjd3toolkit', 'rjd3x13' and 'rjd3tramoseats').
Author: Tanguy Barthelemy [aut, cre]
Maintainer: Tanguy Barthelemy <tanguy.barthelemy@insee.fr>
Diff between rjd3jars versions 0.0.1 dated 2025-12-15 and 0.0.2 dated 2026-03-05
DESCRIPTION | 6 +++--- MD5 | 8 +++++--- NEWS.md |only R/zzz.R | 25 ++++++++++++++++++------- README.md |only man/jd3_utilities.Rd | 9 +++++++-- 6 files changed, 33 insertions(+), 15 deletions(-)
Title: 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
Description: 'Rcpp' integration for 'GNU GSL' vectors and matrices
The 'GNU Scientific Library' (or 'GSL') is a collection of numerical routines for
scientific computing. It is particularly useful for C and C++ programs as it
provides a standard C interface to a wide range of mathematical routines. There
are over 1000 functions in total with an extensive test suite. The 'RcppGSL'
package provides an easy-to-use interface between 'GSL' data structures and
R using concepts from 'Rcpp' which is itself a package that eases the
interfaces between R and C++. This package also serves as a prime example of
how to build a package that uses 'Rcpp' to connect to another third-party
library. The 'autoconf' script, 'inline' plugin and example package can all
be used as a stanza to write a similar package against another library.
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppGSL versions 0.3.13 dated 2023-01-12 and 0.3.14 dated 2026-03-05
RcppGSL-0.3.13/RcppGSL/inst/doc/RcppGSL-intro.Rnw |only RcppGSL-0.3.13/RcppGSL/inst/doc/RcppGSL-intro.pdf |only RcppGSL-0.3.13/RcppGSL/src/init.c |only RcppGSL-0.3.13/RcppGSL/vignettes/RcppGSL-intro.Rnw |only RcppGSL-0.3.13/RcppGSL/vignettes/RcppGSL-introduction.pdf |only RcppGSL-0.3.14/RcppGSL/ChangeLog | 52 + RcppGSL-0.3.14/RcppGSL/DESCRIPTION | 22 RcppGSL-0.3.14/RcppGSL/MD5 | 36 - RcppGSL-0.3.14/RcppGSL/NAMESPACE | 6 RcppGSL-0.3.14/RcppGSL/R/RcppExports.R | 10 RcppGSL-0.3.14/RcppGSL/R/fastLm.R | 4 RcppGSL-0.3.14/RcppGSL/README.md | 10 RcppGSL-0.3.14/RcppGSL/build/partial.rdb |binary RcppGSL-0.3.14/RcppGSL/build/vignette.rds |binary RcppGSL-0.3.14/RcppGSL/configure | 267 ++++------ RcppGSL-0.3.14/RcppGSL/configure.ac | 6 RcppGSL-0.3.14/RcppGSL/inst/NEWS.Rd | 13 RcppGSL-0.3.14/RcppGSL/inst/doc/RcppGSL-introduction.pdf |only RcppGSL-0.3.14/RcppGSL/inst/doc/RcppGSL-introduction.pdf.asis |only RcppGSL-0.3.14/RcppGSL/inst/examples/RcppGSLExample/src/colNorm_old.cpp | 26 RcppGSL-0.3.14/RcppGSL/src/RcppExports.cpp | 56 +- RcppGSL-0.3.14/RcppGSL/src/fastLm.cpp | 4 RcppGSL-0.3.14/RcppGSL/vignettes/RcppGSL-introduction.pdf.asis |only 23 files changed, 298 insertions(+), 214 deletions(-)
Title: Creates Co-Occurrence Matrices of Spatial Data
Description: Builds co-occurrence matrices based on spatial raster data.
It includes creation of weighted co-occurrence matrices (wecoma) and
integrated co-occurrence matrices
(incoma; Vadivel et al. (2007) <doi:10.1016/j.patrec.2007.01.004>).
Author: Jakub Nowosad [aut, cre] ,
Maximillian H.K. Hesselbarth [ctb] , get_unique_values, and rcpp_get_coma
functions),
Marco Sciaini [ctb] , get_unique_values, and rcpp_get_coma
functions),
Sebastian Hanss [ctb] , get_unique_values, and rcpp_get_coma
funct [...truncated...]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between comat versions 0.9.6 dated 2025-09-26 and 0.9.7 dated 2026-03-05
DESCRIPTION | 6 ++--- MD5 | 16 +++++++-------- NEWS.md | 4 +++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/coma.html | 4 +-- inst/doc/incoma.html | 4 +-- inst/doc/wecoma.html | 4 +-- src/RcppExports.cpp | 52 +++++++++++++++++++++++++-------------------------- 9 files changed, 47 insertions(+), 43 deletions(-)
Title: Multidimensional Scaling of Asymmetric Proximities
Description: Multidimensional scaling models and methods for the visualization and analysis of asymmetric proximity data. An asymmetric data matrix has the same number of rows and columns, and these rows and columns refer to the same set of objects. At least some elements in the upper-triangle are different from the corresponding elements in the lower triangle. An example of an asymmetric matrix is a student migration table, where the rows correspond to the countries of origin of the students and the columns to the destination countries. This package provides algorithms for three multidimensional scaling models, the slide-vector model, a scaling model with unique dimensions and the asymscal model. Furthermore, some other procedures, such as a heat map for skew-symmetric data, and the decomposition of asymmetry are also provided for the exploratory analysis of asymmetric tables.
Author: Berrie Zielman [aut, cre]
Maintainer: Berrie Zielman <berrie.zielman@gmail.com>
Diff between asymmetry versions 2.0.5 dated 2025-10-02 and 2.0.6 dated 2026-03-05
asymmetry-2.0.5/asymmetry/build/partial.rdb |only asymmetry-2.0.5/asymmetry/man/asymmetry-package.Rd |only asymmetry-2.0.6/asymmetry/DESCRIPTION | 12 +- asymmetry-2.0.6/asymmetry/MD5 | 31 ++--- asymmetry-2.0.6/asymmetry/NAMESPACE | 3 asymmetry-2.0.6/asymmetry/R/hmap.R | 53 +++------ asymmetry-2.0.6/asymmetry/R/slidevector.R | 1 asymmetry-2.0.6/asymmetry/README.md |only asymmetry-2.0.6/asymmetry/build/vignette.rds |binary asymmetry-2.0.6/asymmetry/inst/doc/asymmetry.R | 62 ----------- asymmetry-2.0.6/asymmetry/inst/doc/asymmetry.Rmd | 68 ------------ asymmetry-2.0.6/asymmetry/inst/doc/asymmetry.html | 118 +++++++++------------ asymmetry-2.0.6/asymmetry/man/asymscal.Rd | 7 - asymmetry-2.0.6/asymmetry/man/hmap.Rd | 10 + asymmetry-2.0.6/asymmetry/man/productsafety.Rd | 3 asymmetry-2.0.6/asymmetry/man/slidevector.Rd | 6 - asymmetry-2.0.6/asymmetry/man/studentmigration.Rd | 6 - asymmetry-2.0.6/asymmetry/vignettes/asymmetry.Rmd | 68 ------------ 18 files changed, 114 insertions(+), 334 deletions(-)
Title: System Native Font Finding
Description: Provides system native access to the font catalogue. As font
handling varies between systems it is difficult to correctly locate
installed fonts across different operating systems. The 'systemfonts'
package provides bindings to the native libraries on Windows, macOS
and Linux for finding font files that can then be used further by e.g.
graphic devices. The main use is intended to be from compiled code but
'systemfonts' also provides access from R.
Author: Thomas Lin Pedersen [aut, cre] ,
Jeroen Ooms [aut] ,
Devon Govett [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between systemfonts versions 1.3.1 dated 2025-10-01 and 1.3.2 dated 2026-03-05
DESCRIPTION | 6 ++--- MD5 | 38 ++++++++++++++++++------------------ NEWS.md | 7 ++++++ R/dev_strings.R | 16 +++++++-------- R/emoji.R | 6 ++--- R/font_fallback.R | 8 +++---- R/font_info.R | 36 +++++++++++++++++----------------- R/font_outline.R | 10 ++++----- R/match_fonts.R | 8 +++---- R/shape_string.R | 48 +++++++++++++++++++++++----------------------- R/web_fonts.R | 8 +++---- R/zzz.R | 5 ++++ README.md | 24 +++++++++++------------ build/vignette.rds |binary configure | 2 + inst/doc/systemfonts.html | 6 ++--- src/font_fallback.cpp | 33 ++++++++++++++++++++++++++++++- src/font_matching.cpp | 6 ++--- src/ft_cache.cpp | 10 +++++++-- src/mac/FontManagerMac.mm | 47 +++++++++++++++++++++++++++++++++++++++++++++ 20 files changed, 211 insertions(+), 113 deletions(-)
Title: Estimation in Difference-in-Difference Designs with Multiple
Groups and Periods
Description: Estimation of heterogeneity-robust difference-in-differences estimators, with a binary, discrete, or continuous treatment, in designs where past treatments may affect the current outcome.
Author: Anzony Quispe [aut, cre],
Diego Ciccia [aut],
Felix Knau [aut],
Melitine Malezieux [aut],
Doulo Sow [aut],
Clement de Chaisemartin [aut]
Maintainer: Anzony Quispe <anzony.quispe@gmail.com>
Diff between DIDmultiplegtDYN versions 2.3.1 dated 2026-02-25 and 2.3.2 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 18 ++-- R/RcppExports.R | 20 ++++ R/did_multiplegt_bootstrap.R | 54 ++++++------ R/did_multiplegt_dyn_design.R | 4 R/did_multiplegt_dyn_dfs.R | 4 R/did_multiplegt_dyn_normweights.R | 4 R/did_save_sample.R | 8 + src/RcppExports.cpp | 64 ++++++++++++++ src/did_loops.cpp | 164 +++++++++++++++++++++++++++++++++++++ 10 files changed, 303 insertions(+), 43 deletions(-)
More information about DIDmultiplegtDYN at CRAN
Permanent link
Title: Case-Control Likelihood Ratio (ccLR)
Description: Implementation of case-control data analysis using likelihood ratio
approaches and logistic regression for the classification of variants of
uncertain significance (VUS) in breast, ovarian, or custom cancer
susceptibility genes.
Author: Damianos Michaelides [aut, cre],
Maria Zanti [aut],
Denise O' Mahony [aut],
Christian Carrizosa [aut],
Theodora Nearchou [aut],
Kyriaki Michailidou [aut]
Maintainer: Damianos Michaelides <damianosm@cing.ac.cy>
Diff between ccLRforR versions 1.0 dated 2026-03-03 and 1.1 dated 2026-03-05
DESCRIPTION | 10 +++++----- MD5 | 16 +++++++++------- NAMESPACE | 6 +++--- R/ccLR_imp.R |only R/hidden.R | 20 ++++++++++++++++++++ build/partial.rdb |binary man/PS4_ccLR.Rd | 6 +++--- man/ccLR_grid.Rd | 6 +++--- man/ccLR_imp.Rd |only man/ccLRforR-package.Rd | 11 +++++++++-- 10 files changed, 52 insertions(+), 23 deletions(-)
Title: Download Mexico City Pollution, Wind, and Temperature Data
Description: Tools for downloading hourly averages, daily maximums and
minimums from each of the pollution, wind, and temperature measuring
stations or geographic zones in the Mexico City metro area. The
package also includes the locations of each of the stations and zones.
See <http://aire.cdmx.gob.mx/> for more information.
Author: Diego Valle-Jones [aut, cre]
Maintainer: Diego Valle-Jones <diego@diegovalle.net>
Diff between aire.zmvm versions 1.0.0 dated 2024-06-26 and 1.0.1 dated 2026-03-05
aire.zmvm-1.0.0/aire.zmvm/man/figures/README-unnamed-chunk-2-1.png |only aire.zmvm-1.0.1/aire.zmvm/DESCRIPTION | 8 - aire.zmvm-1.0.1/aire.zmvm/MD5 | 22 ++-- aire.zmvm-1.0.1/aire.zmvm/NAMESPACE | 1 aire.zmvm-1.0.1/aire.zmvm/NEWS.md | 8 + aire.zmvm-1.0.1/aire.zmvm/R/download_archives.R | 52 ++++++++-- aire.zmvm-1.0.1/aire.zmvm/R/get_latest_imeca.R | 28 ++++- aire.zmvm-1.0.1/aire.zmvm/R/get_station_imeca.R | 4 aire.zmvm-1.0.1/aire.zmvm/man/figures/README-readme-contingencias-1.png |only aire.zmvm-1.0.1/aire.zmvm/man/figures/index-contingencias-1.png |only aire.zmvm-1.0.1/aire.zmvm/man/figures/pano-mxc.jpg |only aire.zmvm-1.0.1/aire.zmvm/man/get_latest_imeca.Rd | 5 aire.zmvm-1.0.1/aire.zmvm/tests/testthat/test_download_archives.R | 23 ---- aire.zmvm-1.0.1/aire.zmvm/tests/testthat/test_get_station_data.R | 23 +--- 14 files changed, 110 insertions(+), 64 deletions(-)
Title: Make Tidy Bins
Description: Multiple ways to bin numeric columns with a tidy output. Wraps a variety of existing binning methods into one function, and includes a new method for binning by equal value, which is useful for sales data. Provides a function to automatically summarize the properties of the binned columns.
Author: Harrison Tietze [aut, cre]
Maintainer: Harrison Tietze <Harrison4192@gmail.com>
This is a re-admission after prior archival of version 0.1.1 dated 2024-06-12
Diff between tidybins versions 0.1.1 dated 2024-06-12 and 0.1.2 dated 2026-03-05
DESCRIPTION | 8 ++-- MD5 | 12 +++--- NEWS.md | 2 + R/make_bins.R | 4 +- R/utilities.R | 5 ++ build/vignette.rds |binary inst/doc/tidybins.html | 94 +++++++++++++++++++++++-------------------------- 7 files changed, 65 insertions(+), 60 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] ,
Hamada S. Badr [ctb] ,
Posit, PBC [cph],
Intel [aut, cph] ,
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 5.1.11 dated 2025-08-27 and 5.1.11-2 dated 2026-03-05
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ inst/include/RcppParallel/TBB.h | 11 ++++++++++- src/tbb/build/macos.inc | 2 +- src/tbb/include/tbb/atomic.h | 7 +++++++ src/tbb/include/tbb/tbb_config.h | 2 +- src/tbb/src/tbb/arena.cpp | 6 ++++++ 8 files changed, 40 insertions(+), 14 deletions(-)
Title: Tests in Linear Mixed Effects Models
Description: Provides p-values in type I, II or III anova and summary tables
for lmer model fits (cf. lme4) via Satterthwaite's degrees of freedom method. A
Kenward-Roger method is also available via the pbkrtest package. Model selection
methods include step, drop1 and anova-like tables for random effects (ranova).
Methods for Least-Square means (LS-means) and tests of linear contrasts of fixed
effects are also available.
Author: Alexandra Kuznetsova [aut],
Per Bruun Brockhoff [aut, ths],
Rune Haubo Bojesen Christensen [aut, cre] ,
Sofie Poedenphant Jensen [ctb]
Maintainer: Rune Haubo Bojesen Christensen <Rune.Haubo@gmail.com>
Diff between lmerTest versions 3.2-0 dated 2026-01-13 and 3.2-1 dated 2026-03-05
lmerTest-3.2-0/lmerTest/R/zzz.R |only lmerTest-3.2-1/lmerTest/DESCRIPTION | 7 +++---- lmerTest-3.2-1/lmerTest/MD5 | 15 +++++++-------- lmerTest-3.2-1/lmerTest/NAMESPACE | 4 +--- lmerTest-3.2-1/lmerTest/NEWS.md | 11 ++++++++--- lmerTest-3.2-1/lmerTest/R/lmer.R | 27 ++++++++++++++++----------- lmerTest-3.2-1/lmerTest/R/lmer_anova.R | 2 +- lmerTest-3.2-1/lmerTest/R/lmer_summary.R | 2 +- lmerTest-3.2-1/lmerTest/tests/test_lmer.R | 9 ++++++++- 9 files changed, 45 insertions(+), 32 deletions(-)
Title: Download and Process Brazilian Education Data from INEP
Description: Download and process public education data from INEP (Instituto
Nacional de Estudos e Pesquisas Educacionais Anísio Teixeira). Provides
functions to access microdata from the School Census (Censo Escolar),
ENEM (Exame Nacional do Ensino Médio), IDEB (Índice de Desenvolvimento
da Educação Básica), and other educational datasets. Returns data in
tidy format ready for analysis. Data source: INEP Open Data Portal
<https://www.gov.br/inep/pt-br/acesso-a-informacao/dados-abertos>.
Author: Sidney da Silva Pereira Bissoli [aut, cre]
Maintainer: Sidney da Silva Pereira Bissoli <sbissoli76@gmail.com>
Diff between educabR versions 0.1.2 dated 2026-02-19 and 0.1.3 dated 2026-03-05
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 9 +++++++++ inst/doc/introducao-educabr.R | 15 ++++++++------- inst/doc/introducao-educabr.Rmd | 15 ++++++++------- inst/doc/introducao-educabr.html | 15 ++++++++------- vignettes/introducao-educabr.Rmd | 15 ++++++++------- 7 files changed, 50 insertions(+), 37 deletions(-)
Title: Statistical Downscaling of Climate Predictions
Description: Statistical downscaling and bias correction of climate predictions.
It includes implementations of commonly used methods such as Analogs,
Linear Regression, Logistic Regression, and Bias Correction techniques,
as well as interpolation functions for regridding and point-based applications.
It facilitates the production of high-resolution and local-scale climate
information from coarse-scale predictions, which is essential for impact analyses.
The package can be applied in a wide range of sectors and studies,
including agriculture, water management, energy, heatwaves, and other
climate-sensitive applications. The package was developed within the framework of
the European Union Horizon Europe projects Impetus4Change (101081555) and ASPECT (101081460),
the Wellcome Trust supported HARMONIZE project (224694/Z/21/Z), and the Spanish national project
BOREAS (PID2022-140673OA-I00). Implements the methods described in
Duzenli et al. (2024) <doi:10.5194/egusphere-egu24-19420>.
Author: BSC-CNS [aut, cph],
Jaume Ramon [aut] ,
Eren Duzenli [aut] ,
Llorenc Lledo [aut] ,
Lluis Palma [ctb],
Sara Moreno-Montes [ctb],
Carlos Delgado [ctb],
Nuria Perez-Zanon [ctb] ,
Javier Corvillo Guerra [ctb],
Raul Marcos [ctb],
Alba Llabres-Brustenga [c [...truncated...]
Maintainer: Victoria Agudetse <victoria.agudetse@bsc.es>
Diff between CSDownscale versions 0.0.1 dated 2025-12-17 and 0.0.2 dated 2026-03-05
DESCRIPTION | 14 ++++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/Analogs.R | 5 +++++ R/Intbc.R | 3 +++ R/Interpolation.R | 31 ++++++++++++++++++------------- R/Intlr.R | 1 + R/LogisticReg.R | 2 ++ 9 files changed, 50 insertions(+), 27 deletions(-)
Title: Processing and Analysing Animal Trajectories
Description: Tools to handle, manipulate and explore trajectory data, with an emphasis on data from tracked animals. The package is designed to support large studies with several million location records and keep track of units where possible. Data import directly from 'movebank' <https://www.movebank.org/cms/movebank-main> and files is facilitated.
Author: Bart Kranstauber [aut, cre] ,
Kamran Safi [aut] ,
Anne K. Scharf [aut]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>
Diff between move2 versions 0.4.5 dated 2025-11-07 and 0.5.0 dated 2026-03-05
move2-0.4.5/move2/tests/testthat/test-segments.R |only move2-0.5.0/move2/DESCRIPTION | 8 move2-0.5.0/move2/MD5 | 82 +-- move2-0.5.0/move2/NAMESPACE | 3 move2-0.5.0/move2/NEWS.md | 11 move2-0.5.0/move2/R/aaa.R | 23 move2-0.5.0/move2/R/movebank_api.R | 339 +++++++++---- move2-0.5.0/move2/R/movebank_api_helper.R | 97 +++ move2-0.5.0/move2/R/movebank_constants.R | 2 move2-0.5.0/move2/R/mt_interpolate.R | 284 +++++++++-- move2-0.5.0/move2/R/mt_segments.R | 11 move2-0.5.0/move2/R/mt_time.R | 4 move2-0.5.0/move2/R/sf.R | 3 move2-0.5.0/move2/R/tidy.R | 46 + move2-0.5.0/move2/R/tidy_track.R | 6 move2-0.5.0/move2/inst/doc/albatross.R | 8 move2-0.5.0/move2/inst/doc/albatross.Rmd | 10 move2-0.5.0/move2/inst/doc/albatross.html | 26 - move2-0.5.0/move2/inst/doc/filtering_tracks.html | 67 +- move2-0.5.0/move2/inst/doc/movebank.html | 71 +- move2-0.5.0/move2/inst/doc/programming_move2_object.R | 18 move2-0.5.0/move2/inst/doc/programming_move2_object.Rmd | 36 + move2-0.5.0/move2/inst/doc/programming_move2_object.html | 46 + move2-0.5.0/move2/inst/doc/trajectory_analysis.R | 40 + move2-0.5.0/move2/inst/doc/trajectory_analysis.Rmd | 48 + move2-0.5.0/move2/inst/doc/trajectory_analysis.html | 74 ++- move2-0.5.0/move2/man/mt_aeqd_crs.Rd | 2 move2-0.5.0/move2/man/mt_azimuth.Rd | 2 move2-0.5.0/move2/man/mt_distance.Rd | 2 move2-0.5.0/move2/man/mt_filter_movebank_visible.Rd | 2 move2-0.5.0/move2/man/mt_filter_unique.Rd | 4 move2-0.5.0/move2/man/mt_interpolate.Rd | 26 - move2-0.5.0/move2/man/mt_read.Rd | 2 move2-0.5.0/move2/man/mt_stack.Rd | 2 move2-0.5.0/move2/man/mt_time.Rd | 4 move2-0.5.0/move2/tests/testthat/test-movebank_api.R | 368 +++++++++++---- move2-0.5.0/move2/tests/testthat/test-mt_interpolate.R | 106 ++++ move2-0.5.0/move2/tests/testthat/test-mt_segments.R |only move2-0.5.0/move2/tests/testthat/test-mt_stack.R | 266 ++++++++-- move2-0.5.0/move2/tests/testthat/test-tidyr.R | 73 ++ move2-0.5.0/move2/vignettes/albatross.Rmd | 10 move2-0.5.0/move2/vignettes/programming_move2_object.Rmd | 36 + move2-0.5.0/move2/vignettes/trajectory_analysis.Rmd | 48 + 43 files changed, 1790 insertions(+), 526 deletions(-)
More information about RSQLite.toolkit at CRAN
Permanent link
Title: Support for Compiling Examination Tasks using the 'exams'
Package
Description: The main aim is to further facilitate the creation of exercises based on the package 'exams'
by Grün, B., and Zeileis, A. (2009) <doi:10.18637/jss.v029.i10>. Creating effective student exercises
involves challenges such as creating appropriate data sets and ensuring access to intermediate values
for accurate explanation of solutions. The functionality includes the generation of univariate and
bivariate data including simple time series, functions for theoretical distributions and their approximation,
statistical and mathematical calculations for tasks in basic statistics courses as well as general tasks
such as string manipulation, LaTeX/HTML formatting and the editing of XML task files for 'Moodle'.
Author: Sigbert Klinke [aut, cre] ,
Kleio Chrysopoulou Tseva [ctb]
Maintainer: Sigbert Klinke <sigbert@hu-berlin.de>
Diff between exams.forge versions 1.0.12 dated 2025-09-10 and 1.0.13 dated 2026-03-05
DESCRIPTION | 12 - MD5 | 52 ++++---- NAMESPACE | 6 R/assoc.R | 1 R/assoc_data.R | 2 R/cleanFile.R | 23 +-- R/combinatorics.R | 289 +++++++++++++++++++++++----------------------- R/distribution.R | 3 R/dunif.R |only R/exams2call.R | 39 ++++-- R/proptests.R | 2 R/sos.R | 97 ++++++++------- R/toHTML.R | 4 R/ttests.R | 2 R/zzz.R | 2 data/distributions.rda |binary inst/doc/exams.forge.R | 2 inst/doc/exams.forge.Rmd | 2 inst/doc/exams.forge.html | 36 ++--- man/DiscreteUniform.Rd |only man/assoc.Rd | 3 man/assoc_data.Rd | 2 man/cleanFile.Rd | 16 +- man/exams2call.Rd | 2 man/proptests.Rd | 2 man/sos.Rd | 13 +- man/ttests.Rd | 2 vignettes/exams.forge.Rmd | 2 28 files changed, 327 insertions(+), 289 deletions(-)
Title: Israel Baby Names 1949-2024
Description: Israeli baby names provided by Israel's Central Bureau of Statistics
(CBS/LAMAS). Contains names used for at least 5 children in a given year,
covering sectors "Jewish", "Muslim", "Christian-Arab", and "Druze" from
1949-2024. Legacy 1948 data and archived "Other" sector data are provided
as separate datasets. Primary data source: CBS Release 391/2025
<https://www.cbs.gov.il/he/mediarelease/DocLib/2025/391/11_25_391t1.xlsx>.
Author: Aviezer Lifshitz [aut, cre]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between babynamesIL versions 0.0.2 dated 2024-01-08 and 0.2.1 dated 2026-03-05
DESCRIPTION | 25 +++-- MD5 | 25 +++-- NEWS.md | 42 +++++++++ R/data.R | 153 +++++++++++++++++++++++++++++++--- README.md | 51 ++++++----- data/babynamesIL.rda |binary data/babynamesIL_1948.rda |only data/babynamesIL_other.rda |only data/babynamesIL_totals.rda |binary man/babynamesIL.Rd | 77 +++++++++++++++-- man/babynamesIL_1948.Rd |only man/babynamesIL_other.Rd |only man/babynamesIL_totals.Rd | 26 +++++ man/figures/README-example-traj-1.png |binary tests/testthat/_snaps |only tests/testthat/test-data.R | 106 ++++++++++++++++++++++- 16 files changed, 436 insertions(+), 69 deletions(-)
Title: Calculates Safety Stopping Boundaries for a Single-Arm Trial
using Bayes
Description: Computation of stopping boundaries for a single-arm trial using a
Bayesian criterion. For each m<=n (n=total patient number of the
trial) the smallest number of observed toxicities is calculated leading
to the termination of the trial/accrual according to the specified criteria.
The probabilities of stopping the trial/accrual at and up until (resp.) the
m-th patient (m<=n) is also calculated. This design is more conservative than
the frequentist approach (using Clopper Pearson CIs) which might be preferred
as it concerns safety. See also Aamot et al. (2010) "Continuous monitoring of
toxicity in clinical Trials - simulating the risk of stopping prematurely"
<doi:10.5414/cpp48476>.
Author: NCT Trial Center, Heidelberg [aut],
Lisa-Marie Lanz [cre]
Maintainer: Lisa-Marie Lanz <studienzentrale@nct-heidelberg.de>
Diff between ToxCrit versions 1.0 dated 2021-10-01 and 1.1 dated 2026-03-05
ToxCrit-1.0/ToxCrit/README.md |only ToxCrit-1.1/ToxCrit/DESCRIPTION | 39 +++++------ ToxCrit-1.1/ToxCrit/MD5 | 9 +- ToxCrit-1.1/ToxCrit/NEWS.md | 5 - ToxCrit-1.1/ToxCrit/R/ToxCrit.R | 7 +- ToxCrit-1.1/ToxCrit/man/ToxCrit.Rd | 123 ++++++++++++++++++++----------------- 6 files changed, 97 insertions(+), 86 deletions(-)
Title: Explainable Outlier Detection Through Decision Tree Conditioning
Description: Outlier detection method that flags suspicious values within observations,
constrasting them against the normal values in a user-readable format, potentially
describing conditions within the data that make a given outlier more rare.
Full procedure is described in Cortes (2020) <doi:10.48550/arXiv.2001.00636>.
Loosely based on the 'GritBot' <https://www.rulequest.com/gritbot-info.html> software.
Author: David Cortes [aut, cre]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between outliertree versions 1.10.0 dated 2024-09-06 and 1.10.0-1 dated 2026-03-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/Introducing_OutlierTree.html | 4 ++-- src/Rwrapper.cpp | 6 +++--- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian,
for specifying a banded numerical Jacobian and for allowing
a singular or ill-conditioned Jacobian.
Author: Berend Hasselman [aut] ,
Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between nleqslv versions 3.3.5 dated 2023-11-26 and 3.3.6 dated 2026-03-05
DESCRIPTION | 27 +- MD5 | 6 NEWS | 634 +++++++++++++++++++++++++++--------------------------- build/partial.rdb |binary 4 files changed, 343 insertions(+), 324 deletions(-)
Title: Analysis and Mining of Multilayer Social Networks
Description: Functions for the creation/generation and analysis of multilayer social networks <doi:10.18637/jss.v098.i08>.
Author: Matteo Magnani [aut, cre],
Luca Rossi [aut] ,
Davide Vega [aut] ,
Obaida Hanteer [ctb]
Maintainer: Matteo Magnani <matteo.magnani@it.uu.se>
This is a re-admission after prior archival of version 4.3.2 dated 2025-10-24
Diff between multinet versions 4.3.2 dated 2025-10-24 and 4.3.4 dated 2026-03-05
multinet-4.3.2/multinet/src/infomap |only multinet-4.3.2/multinet/src/src/community/_impl/infomap_utils.hpp |only multinet-4.3.2/multinet/src/src/community/infomap.hpp |only multinet-4.3.2/multinet/src/src/community/infomap.ipp |only multinet-4.3.4/multinet/DESCRIPTION | 28 +-- multinet-4.3.4/multinet/MD5 | 72 ---------- multinet-4.3.4/multinet/NEWS | 4 multinet-4.3.4/multinet/src/Makevars | 8 - multinet-4.3.4/multinet/src/Makevars.win | 8 - multinet-4.3.4/multinet/src/r_functions.cpp | 18 -- multinet-4.3.4/multinet/src/src/core/attributes/conversion.cpp | 27 ++- 11 files changed, 52 insertions(+), 113 deletions(-)
Title: 'ICESat-2' Altimeter Data using R
Description: Programmatic connection to the 'OpenAltimetry' API <https://openaltimetry.earthdatacloud.nasa.gov/data/openapi/swagger-ui/index.html/> to download and process 'ATL03' (Global 'Geolocated' Photon Data), 'ATL06' (Land Ice Height), 'ATL07' (Sea Ice Height), 'ATL08' (Land and Vegetation Height), 'ATL10' (Sea Ice 'Freeboard'), 'ATL12' (Ocean Surface Height) and 'ATL13' (Inland Water Surface Height) 'ICESat-2' Altimeter Data. The user has the option to download the data by selecting a bounding box from a 1- or 5-degree grid globally utilizing a shiny application. The 'ICESat-2' mission collects 'altimetry' data of the Earth's surface. The sole instrument on 'ICESat-2' is the Advanced Topographic Laser Altimeter System (ATLAS) instrument that measures ice sheet elevation change and sea ice thickness, while also generating an estimate of global vegetation biomass. 'ICESat-2' continues the important observations of ice-sheet elevation change, sea-ice 'freeboard', and vegetation canopy hei [...truncated...]
Author: Lampros Mouselimis [aut, cre] ,
OpenAltimetry.org [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between IceSat2R versions 1.0.8 dated 2026-02-20 and 1.0.9 dated 2026-03-05
DESCRIPTION | 8 MD5 | 24 - NEWS.md | 5 README.md | 4 inst/doc/IceSat-2_Atlas_products_PDF.R | 341 +++++++++---------- inst/doc/IceSat-2_Atlas_products_PDF.Rmd | 341 +++++++++---------- inst/doc/IceSat-2_Atlas_products_PDF.pdf |binary inst/doc/IceSat-2_Mission_Orbits_PDF.R | 338 +++++++++--------- inst/doc/IceSat-2_Mission_Orbits_PDF.Rmd | 304 ++++++++-------- inst/doc/IceSat-2_Mission_Orbits_PDF.pdf |binary inst/doc/IceSat-2_Virtual_File_System_Orbits_PDF.pdf |binary vignettes/IceSat-2_Atlas_products_PDF.Rmd | 341 +++++++++---------- vignettes/IceSat-2_Mission_Orbits_PDF.Rmd | 304 ++++++++-------- 13 files changed, 979 insertions(+), 1031 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Mueller [aut, cre] ,
Antoine Fabri [ctb],
Darko Bergant [aut],
Katharina Brunner [ctb],
James Wondrasek [ctb],
Indrajeet Patil [ctb] ,
Maelle Salmon [ctb] ,
energie360 AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between dm versions 1.1.0 dated 2026-02-25 and 1.1.1 dated 2026-03-05
DESCRIPTION | 8 +- MD5 | 34 ++++----- NEWS.md | 9 ++ R/dm.R | 1 R/igraph-fallback.R | 140 +++++++++++++++++++++++++++----------- inst/doc/dm.html | 4 - inst/doc/howto-dm-copy.html | 4 - inst/doc/howto-dm-db.html | 4 - inst/doc/howto-dm-df.html | 4 - inst/doc/howto-dm-rows.html | 4 - inst/doc/howto-dm-theory.html | 4 - inst/doc/tech-dm-cdm.html | 4 - inst/doc/tech-dm-class.html | 4 - inst/doc/tech-dm-draw.html | 4 - inst/doc/tech-dm-filter.html | 4 - inst/doc/tech-dm-join.html | 4 - inst/doc/tech-dm-low-level.html | 4 - tests/testthat/_snaps/duckplyr.md | 1 18 files changed, 157 insertions(+), 84 deletions(-)
Title: Data Access and Analytical Tools for 'VectorSurv' Users
Description: Allows registered 'VectorSurv' <https://vectorsurv.org/> users access to data through the 'VectorSurv API' <https://api.vectorsurv.org/>. Additionally provides functions for analysis and visualization.
Author: Christina De Cesaris [aut],
Lincoln Wells [aut],
VectorSurv Staff [aut, cre]
Maintainer: VectorSurv Staff <help@vectorsurv.org>
Diff between vectorsurvR versions 1.6.2 dated 2026-01-14 and 1.6.3 dated 2026-03-05
DESCRIPTION | 20 +++-- MD5 | 39 ++++++----- NAMESPACE | 27 +++++++ R/getAgency.R |only R/getRegions.R | 2 R/getSpatialFeatures.R | 1 R/getSpeciesTable.R | 85 ++++++++++++------------ R/getToken.R | 3 R/globals.R | 10 ++ R/plotInvasiveSums.R | 4 - R/plotPoolsMap.R |only R/plotSpeciesMap.R |only R/plotVectorAbundance.R | 2 R/utils-map.R |only inst/doc/vectorsurvR.Rmd | 2 inst/doc/vectorsurvR.html | 7 + man/getAgency.Rd |only man/getRegions.Rd | 34 ++++----- man/getSpeciesTable.Rd | 112 +++++++++++++++---------------- man/plotInvasiveSums.Rd | 61 +++++++++-------- man/plotPoolsMap.Rd |only man/plotSpeciesMap.Rd |only man/plotVectorAbundance.Rd | 158 ++++++++++++++++++++++----------------------- vignettes/vectorsurvR.Rmd | 2 24 files changed, 313 insertions(+), 256 deletions(-)
Title: A Curated Collection of Pulmonary and Respiratory Disease
Datasets
Description: Provides a comprehensive and curated collection of datasets related to the lungs, respiratory system, and associated diseases.
This package includes epidemiological, clinical, experimental, and simulated datasets on conditions such as lung cancer, asthma,
Chronic Obstructive Pulmonary Disease (COPD), tuberculosis, whooping cough, pneumonia, influenza, and other respiratory illnesses.
It is designed to support data exploration, statistical modeling, teaching, and research in pulmonary medicine, public health,
environmental epidemiology, and respiratory disease surveillance.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between PulmoDataSets versions 0.2.0 dated 2025-09-07 and 0.2.1 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 100 ++++++++++---------- NEWS.md | 9 + R/data-documentation.R | 8 - R/pulmodatasets-package.R | 2 R/view_datasets_PulmoDataSets.R | 2 README.md | 5 + build/vignette.rds |binary inst/CITATION | 5 - inst/doc/introduction_to_pulmodatasets.html | 11 +- inst/licenses/LICENSE | 4 man/children_respiratory_rates_df.Rd | 2 man/engwales_cancer_mortality_df.Rd | 2 man/neonatal_intubation_times_df.Rd | 2 tests/testthat/test-UK_female_lung_deaths_ts.R | 2 tests/testthat/test-UK_male_lung_deaths_ts.R | 2 tests/testthat/test-USMortality_df.R | 2 tests/testthat/test-USRegionalMortality_df.R | 2 tests/testthat/test-ai_ipn_performance_dt.R | 2 tests/testthat/test-air_polution_mortality_df.R | 2 tests/testthat/test-asthma_patients_tbl_df.R | 2 tests/testthat/test-bronchitis_Cardiff_df.R | 2 tests/testthat/test-chicago_pollution_df.R | 2 tests/testthat/test-child_wheeze_pollution_df.R | 2 tests/testthat/test-children_respiratory_rates_df.R | 2 tests/testthat/test-danish_lung_incidence_df.R | 2 tests/testthat/test-engwales_cancer_mortality_df.R | 2 tests/testthat/test-influenza_us_1975_df.R | 2 tests/testthat/test-lung_cancer_survival_df.R | 2 tests/testthat/test-lung_nodules_detection_dt.R | 2 tests/testthat/test-lungca_cancer_deaths_df.R | 2 tests/testthat/test-neonatal_intubation_times_df.R | 2 tests/testthat/test-nicotine_gum_df.R | 2 tests/testthat/test-ohio_children_wheeze_df.R | 2 tests/testthat/test-patients_lung_diseases_tbl_df.R | 2 tests/testthat/test-pneumonia_influenza_ts.R | 2 tests/testthat/test-respiratory_clinical_trial_df.R | 2 tests/testthat/test-respiratory_infections_df.R | 2 tests/testthat/test-respiratory_trial_df.R | 2 tests/testthat/test-respiratory_trial_outcomes_df.R | 2 tests/testthat/test-smoking_UK_tbl_df.R | 2 tests/testthat/test-smoking_doctors_df.R | 2 tests/testthat/test-smoking_lung_cancer_df.R | 2 tests/testthat/test-smoking_youth_tbl_df.R | 2 tests/testthat/test-tlc_lung_capacity_df.R | 2 tests/testthat/test-tuberculosis_vaccine_df.R | 2 tests/testthat/test-veterans_lung_cancer_df.R | 2 tests/testthat/test-view_datasets_PulmoDataSets.R | 2 tests/testthat/test-whooping_cough_dk_df.R | 2 tests/testthat/test-whooping_cough_phila_df.R | 2 tests/testthat/test-whooping_cough_ts.R | 2 51 files changed, 124 insertions(+), 108 deletions(-)
Title: Utilities for Scheduling Functions to Execute Later with Event
Loops
Description: Executes arbitrary R or C functions some time after the
current time, after the R execution stack has emptied. The functions
are scheduled in an event loop.
Author: Winston Chang [aut] ,
Joe Cheng [aut],
Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Marcus Geelnard [ctb, cph] ,
Evan Nemerson [ctb, cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between later versions 1.4.7 dated 2026-02-24 and 1.4.8 dated 2026-03-05
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ inst/doc/later-cpp.html | 4 ++-- inst/include/later_api.h | 2 +- src/badthreads.h | 2 -- src/later.cpp | 2 +- src/later_win32.cpp | 2 +- src/tinycthread.h | 4 ++-- 9 files changed, 22 insertions(+), 20 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cph],
Julia Piaskowski [cre, aut],
Balazs Banfai [ctb],
Ben Bolker [ctb],
Paul Buerkner [ctb],
Iago Gine-Vazquez [ctb],
Maxime Herve [ctb],
Maarten Jung [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Hannes Riebl [ctb],
Hen [...truncated...]
Maintainer: Julia Piaskowski <julia.piask@gmail.com>
Diff between emmeans versions 2.0.1 dated 2025-12-16 and 2.0.2 dated 2026-03-05
DESCRIPTION | 12 MD5 | 350 +-- NAMESPACE | 535 ++--- NEWS.md | 2772 ++++++++++++++--------------- R/0nly-internal.R | 1148 ++++++------ R/MCMC-support.R | 1426 +++++++-------- R/S4-classes.R | 252 +- R/aovlist-support.R | 412 ++-- R/betareg.support.R | 262 +- R/brms-support.R | 64 R/cld-emm.R | 516 ++--- R/contrast.R | 1262 ++++++------- R/countreg-support.R | 638 +++--- R/datasets.R | 690 +++---- R/eff-size.R | 322 +-- R/emm-contr.R | 1142 ++++++------ R/emm-example.R | 152 - R/emm-list.R | 764 ++++---- R/emmGrid-methods.R | 2208 +++++++++++------------ R/emmeans-package.R | 246 +- R/emmeans.R | 1652 ++++++++--------- R/emmip.R | 1162 ++++++------ R/emtrends.R | 540 ++--- R/factors.R | 764 ++++---- R/gam-support.R | 560 ++--- R/glht-support.R | 488 ++--- R/helpers.R | 1790 +++++++++---------- R/interfacing.R | 920 ++++----- R/lqm-support.R | 244 +- R/models.R | 62 R/multinom-support.R | 268 +- R/multiple-models.R | 372 +-- R/multiv.R | 480 ++--- R/nested.R | 854 ++++----- R/nonlin-support.R | 288 +-- R/ordinal-support.R | 828 ++++---- R/plot.emm.R | 1222 ++++++------- R/pwpp.R | 1106 +++++------ R/qdrg.R | 602 +++--- R/rbind.R | 386 ++-- R/ref-grid.R | 2562 +++++++++++++-------------- R/rms-support.R | 238 +- R/sommer-support.R | 132 - R/summary.R | 2992 ++++++++++++++++---------------- R/test.R | 1090 +++++------ R/transformations.R | 958 +++++----- R/wrappers.R | 256 +- R/xtable-method.R | 258 +- R/zzz.R | 332 +-- README.md | 246 +- build/vignette.rds |binary inst/css/clean-simple.css | 78 inst/doc/AQuickStart.R | 8 inst/doc/AQuickStart.Rmd | 430 ++-- inst/doc/AQuickStart.html | 668 +++---- inst/doc/FAQs.R | 28 inst/doc/FAQs.Rmd | 960 +++++----- inst/doc/FAQs.html | 1232 ++++++------- inst/doc/basics.R | 302 +-- inst/doc/basics.Rmd | 1454 +++++++-------- inst/doc/basics.html | 1992 ++++++++++----------- inst/doc/comparisons.R | 188 +- inst/doc/comparisons.Rmd | 736 +++---- inst/doc/comparisons.html | 1138 +++++------- inst/doc/confidence-intervals.R | 138 - inst/doc/confidence-intervals.Rmd | 616 +++--- inst/doc/confidence-intervals.html | 1124 +++++------- inst/doc/interactions.R | 172 - inst/doc/interactions.Rmd | 734 +++---- inst/doc/interactions.html | 1258 ++++++------- inst/doc/messy-data.R | 265 +- inst/doc/messy-data.Rmd | 1099 +++++------ inst/doc/messy-data.html | 1624 ++++++++--------- inst/doc/models.Rmd | 1112 +++++------ inst/doc/models.html | 2212 +++++++++++------------ inst/doc/predictions.R | 78 inst/doc/predictions.Rmd | 326 +-- inst/doc/predictions.html | 541 ++--- inst/doc/re-engineering-clds.R | 54 inst/doc/re-engineering-clds.html | 734 +++---- inst/doc/re-engineering-clds.rmd | 472 ++--- inst/doc/sophisticated.R | 318 +-- inst/doc/sophisticated.Rmd | 954 +++++----- inst/doc/sophisticated.html | 1586 ++++++++-------- inst/doc/transformations.R | 402 ++-- inst/doc/transformations.Rmd | 1418 +++++++-------- inst/doc/transformations.html | 2052 ++++++++++----------- inst/doc/utilities.R | 180 - inst/doc/utilities.Rmd | 592 +++--- inst/doc/utilities.html | 1040 +++++------ inst/doc/vignette-topics.Rmd | 1610 ++++++++--------- inst/doc/vignette-topics.html | 2418 ++++++++++++------------- inst/doc/xplanations.R | 190 +- inst/doc/xplanations.Rmd | 784 ++++---- inst/doc/xplanations.html | 1174 ++++++------ inst/doc/xtending.R | 288 +-- inst/doc/xtending.Rmd | 1084 +++++------ inst/doc/xtending.html | 1838 +++++++++---------- inst/extexamples/as.mcmc-coda.R | 16 inst/extexamples/cld-multcomp.R | 14 inst/extexamples/glht-multcomp.R | 24 inst/extexamples/hpd.summary-coda.R | 18 inst/extexamples/mvregrid.R | 24 inst/extexamples/qdrg-biglm.R | 20 inst/extexamples/qdrg-coda.R | 14 inst/extexamples/qdrg-ordinal.R | 12 inst/extexamples/xtable.R | 6 man/CLD.emmGrid.Rd | 214 +- man/MOats.Rd | 94 - man/as.emmGrid.Rd | 132 - man/auto.noise.Rd | 124 - man/contrast.Rd | 466 ++-- man/eff_size.Rd | 248 +- man/emmGrid-class.Rd | 196 +- man/emmGrid-methods.Rd | 108 - man/emm_example.Rd | 66 man/emm_list-object.Rd | 208 +- man/emm_options.Rd | 450 ++-- man/emmc-functions.Rd | 462 ++-- man/emmeans-package.Rd | 200 +- man/emmeans.Rd | 508 ++--- man/emmip.Rd | 495 ++--- man/emmobj.Rd | 214 +- man/emtrends.Rd | 278 +- man/extending-emmeans.Rd | 712 +++---- man/feedlot.Rd | 102 - man/fiber.Rd | 82 man/glht-support.Rd | 152 - man/hpd.summary.Rd | 190 +- man/joint_tests.Rd | 392 ++-- man/make.tran.Rd | 392 ++-- man/manip-factors.Rd | 386 ++-- man/mcmc-support.Rd | 208 +- man/models.Rd | 18 man/mvcontrast.Rd | 162 - man/mvregrid.Rd | 102 - man/neuralgia.Rd | 86 man/nutrition.Rd | 102 - man/oranges.Rd | 94 - man/pigs.Rd | 68 man/plot.Rd | 332 +-- man/pwpm.Rd | 148 - man/pwpp.Rd | 242 +- man/qdrg.Rd | 272 +- man/rbind.emmGrid.Rd | 238 +- man/ref_grid.Rd | 932 ++++----- man/regrid.Rd | 260 +- man/summary.emmGrid.Rd | 994 +++++----- man/ubds.Rd | 80 man/untidy.Rd | 62 man/update.emmGrid.Rd | 562 +++--- man/wrappers.Rd | 126 - man/xtable.emmGrid.Rd | 128 - tests/testthat.R | 8 tests/testthat/test-contrast.R | 70 tests/testthat/test-emmeans.R | 62 tests/testthat/test-emtrends.R | 42 tests/testthat/test-nested.R | 74 tests/testthat/test-ref_grid.R | 188 +- tests/testthat/test-utility_functions.R | 44 vignettes/AQuickStart.Rmd | 430 ++-- vignettes/FAQs.Rmd | 960 +++++----- vignettes/basics.Rmd | 1454 +++++++-------- vignettes/comparisons.Rmd | 736 +++---- vignettes/confidence-intervals.Rmd | 616 +++--- vignettes/interactions.Rmd | 734 +++---- vignettes/messy-data.Rmd | 1099 +++++------ vignettes/models.Rmd | 1112 +++++------ vignettes/predictions.Rmd | 326 +-- vignettes/re-engineering-clds.rmd | 472 ++--- vignettes/sophisticated.Rmd | 954 +++++----- vignettes/transformations.Rmd | 1418 +++++++-------- vignettes/utilities.Rmd | 592 +++--- vignettes/vignette-topics.Rmd | 1610 ++++++++--------- vignettes/xplanations.Rmd | 784 ++++---- vignettes/xtending.Rmd | 1084 +++++------ 176 files changed, 52669 insertions(+), 52961 deletions(-)
Title: Text Cleaning Tools
Description: Tools to clean and process text. Tools are geared at checking for substrings that
are not optimal for analysis and replacing or removing them (normalizing) with more
analysis friendly substrings (see Sproat, Black, Chen, Kumar, Ostendorf, & Richards
(2001) <doi:10.1006/csla.2001.0169>) or extracting them into new variables. For
example, emoticons are often used in text but not always easily handled by analysis
algorithms. The replace_emoticon() function replaces emoticons with word
equivalents.
Author: Tyler Rinker [aut, cre],
ctwheels StackOverflow [ctb],
Surin Space [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between textclean versions 0.9.3 dated 2018-07-23 and 0.9.7 dated 2026-03-05
textclean-0.9.3/textclean/NEWS |only textclean-0.9.3/textclean/R/filter_element.R |only textclean-0.9.3/textclean/R/filter_row.R |only textclean-0.9.3/textclean/man/filter_element.Rd |only textclean-0.9.3/textclean/man/filter_row.Rd |only textclean-0.9.3/textclean/man/textclean.Rd |only textclean-0.9.7/textclean/DESCRIPTION | 43 textclean-0.9.7/textclean/MD5 | 212 textclean-0.9.7/textclean/NAMESPACE | 154 textclean-0.9.7/textclean/NEWS.md |only textclean-0.9.7/textclean/R/add_comma_space.R | 38 textclean-0.9.7/textclean/R/add_missing_endmark.R | 60 textclean-0.9.7/textclean/R/check_text.R | 581 - textclean-0.9.7/textclean/R/check_text_logicals.R | 947 +-- textclean-0.9.7/textclean/R/drop_element.R | 164 textclean-0.9.7/textclean/R/drop_row.R | 206 textclean-0.9.7/textclean/R/fgsub.R | 372 - textclean-0.9.7/textclean/R/fix_mdyyyy.R |only textclean-0.9.7/textclean/R/glue-reexports.R | 14 textclean-0.9.7/textclean/R/has_endmark.R | 68 textclean-0.9.7/textclean/R/like.R |only textclean-0.9.7/textclean/R/make_plural.R | 66 textclean-0.9.7/textclean/R/match_tokens.R | 60 textclean-0.9.7/textclean/R/mgsub.R | 366 - textclean-0.9.7/textclean/R/replace_contraction.R | 64 textclean-0.9.7/textclean/R/replace_date.R | 110 textclean-0.9.7/textclean/R/replace_email.R | 100 textclean-0.9.7/textclean/R/replace_emoji.R | 91 textclean-0.9.7/textclean/R/replace_emoticon.R | 93 textclean-0.9.7/textclean/R/replace_grade.R | 58 textclean-0.9.7/textclean/R/replace_hash.R | 86 textclean-0.9.7/textclean/R/replace_html.R | 172 textclean-0.9.7/textclean/R/replace_incomplete.R | 48 textclean-0.9.7/textclean/R/replace_internet_slang.R | 76 textclean-0.9.7/textclean/R/replace_kerning.R | 80 textclean-0.9.7/textclean/R/replace_misspelling.R |only textclean-0.9.7/textclean/R/replace_money.R | 110 textclean-0.9.7/textclean/R/replace_names.R | 76 textclean-0.9.7/textclean/R/replace_non_ascii.R | 196 textclean-0.9.7/textclean/R/replace_number.R | 297 textclean-0.9.7/textclean/R/replace_ordinal.R | 88 textclean-0.9.7/textclean/R/replace_rating.R | 64 textclean-0.9.7/textclean/R/replace_symbol.R | 86 textclean-0.9.7/textclean/R/replace_tag.R | 86 textclean-0.9.7/textclean/R/replace_time.R | 144 textclean-0.9.7/textclean/R/replace_to.R | 170 textclean-0.9.7/textclean/R/replace_tokens.R | 154 textclean-0.9.7/textclean/R/replace_url.R | 92 textclean-0.9.7/textclean/R/replace_white.R | 36 textclean-0.9.7/textclean/R/replace_word_elongation.R | 242 textclean-0.9.7/textclean/R/strip.R | 196 textclean-0.9.7/textclean/R/sub_holder.R | 204 textclean-0.9.7/textclean/R/swap.R | 52 textclean-0.9.7/textclean/R/sysdata.rda |binary textclean-0.9.7/textclean/R/textclean-package.R | 55 textclean-0.9.7/textclean/R/utils.R | 482 - textclean-0.9.7/textclean/README.md | 3142 ++++------ textclean-0.9.7/textclean/data/DATA.rda |binary textclean-0.9.7/textclean/inst/CITATION | 38 textclean-0.9.7/textclean/inst/docs/emoji_sample.txt | 6 textclean-0.9.7/textclean/inst/docs/r_tweets.txt | 22 textclean-0.9.7/textclean/man/DATA.Rd | 48 textclean-0.9.7/textclean/man/add_comma_space.Rd | 54 textclean-0.9.7/textclean/man/add_missing_endmark.Rd | 70 textclean-0.9.7/textclean/man/check_text.Rd | 175 textclean-0.9.7/textclean/man/drop_element.Rd | 110 textclean-0.9.7/textclean/man/drop_row.Rd | 132 textclean-0.9.7/textclean/man/fgsub.Rd | 138 textclean-0.9.7/textclean/man/fix_mdyyyy.Rd |only textclean-0.9.7/textclean/man/has_endmark.Rd | 66 textclean-0.9.7/textclean/man/like.Rd |only textclean-0.9.7/textclean/man/make_plural.Rd | 63 textclean-0.9.7/textclean/man/match_tokens.Rd | 70 textclean-0.9.7/textclean/man/mgsub.Rd | 243 textclean-0.9.7/textclean/man/print.check_text.Rd | 51 textclean-0.9.7/textclean/man/print.sub_holder.Rd | 32 textclean-0.9.7/textclean/man/print.which_are_locs.Rd | 42 textclean-0.9.7/textclean/man/reexports.Rd | 35 textclean-0.9.7/textclean/man/replace_contraction.Rd | 80 textclean-0.9.7/textclean/man/replace_date.Rd | 68 textclean-0.9.7/textclean/man/replace_email.Rd | 103 textclean-0.9.7/textclean/man/replace_emoji.Rd | 82 textclean-0.9.7/textclean/man/replace_emoticon.Rd | 101 textclean-0.9.7/textclean/man/replace_grade.Rd | 62 textclean-0.9.7/textclean/man/replace_hash.Rd | 88 textclean-0.9.7/textclean/man/replace_html.Rd | 144 textclean-0.9.7/textclean/man/replace_incomplete.Rd | 58 textclean-0.9.7/textclean/man/replace_internet_slang.Rd | 94 textclean-0.9.7/textclean/man/replace_kern.Rd | 78 textclean-0.9.7/textclean/man/replace_misspelling.Rd |only textclean-0.9.7/textclean/man/replace_money.Rd | 76 textclean-0.9.7/textclean/man/replace_names.Rd | 82 textclean-0.9.7/textclean/man/replace_non_ascii.Rd | 113 textclean-0.9.7/textclean/man/replace_number.Rd | 159 textclean-0.9.7/textclean/man/replace_ordinal.Rd | 74 textclean-0.9.7/textclean/man/replace_rating.Rd | 78 textclean-0.9.7/textclean/man/replace_symbol.Rd | 98 textclean-0.9.7/textclean/man/replace_tag.Rd | 88 textclean-0.9.7/textclean/man/replace_time.Rd | 137 textclean-0.9.7/textclean/man/replace_to.Rd | 128 textclean-0.9.7/textclean/man/replace_tokens.Rd | 178 textclean-0.9.7/textclean/man/replace_url.Rd | 94 textclean-0.9.7/textclean/man/replace_white.Rd | 56 textclean-0.9.7/textclean/man/replace_word_elongation.Rd | 143 textclean-0.9.7/textclean/man/strip.Rd | 149 textclean-0.9.7/textclean/man/sub_holder.Rd | 116 textclean-0.9.7/textclean/man/swap.Rd | 66 textclean-0.9.7/textclean/man/textclean-package.Rd |only textclean-0.9.7/textclean/man/which_are.Rd | 132 textclean-0.9.7/textclean/tests/testthat.R | 6 textclean-0.9.7/textclean/tests/testthat/test-replace_emoticon.R | 22 textclean-0.9.7/textclean/tests/testthat/test-replace_grade.R | 44 textclean-0.9.7/textclean/tests/testthat/test-replace_rating.R | 80 textclean-0.9.7/textclean/tests/testthat/test-strip.R | 14 114 files changed, 7464 insertions(+), 7323 deletions(-)
Title: Species Sensitivity Distributions
Description: Species sensitivity distributions are cumulative probability
distributions which are fitted to toxicity concentrations for
different species as described by Posthuma et al.(2001)
<isbn:9781566705783>. The ssdtools package uses Maximum Likelihood to
fit distributions such as the gamma, log-logistic, log-normal and
log-normal log-normal mixture. Multiple distributions can be averaged
using Akaike Information Criteria. Confidence intervals on hazard
concentrations and proportions are produced by bootstrapping.
Author: Joe Thorley [aut, cre] ,
Rebecca Fisher [aut],
David Fox [aut],
Carl Schwarz [aut],
Angeline Tillmanns [ctb],
Seb Dalgarno [ctb] ,
Kathleen McTavish [ctb],
Heather Thompson [ctb],
Doug Spry [ctb],
Rick van Dam [ctb],
Graham Batley [ctb],
Ali Azizishi [...truncated...]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between ssdtools versions 2.5.0 dated 2025-12-01 and 2.6.0 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 57 ++++++------- NEWS.md | 9 +- R/bcanz.R | 25 ++--- R/hc-burrlioz.R | 2 R/hc.R | 7 + R/hp.R | 4 R/plot-cdf.R | 17 ++- R/predict.R | 4 inst/doc/faqs.html | 4 inst/doc/ssdtools.Rmd | 2 inst/doc/ssdtools.html | 10 +- man/predict.fitburrlioz.Rd | 2 man/predict.fitdists.Rd | 2 man/ssd_fit_bcanz.Rd | 13 ++ man/ssd_hc.Rd | 4 man/ssd_hc_bcanz.Rd | 16 +++ man/ssd_hc_burrlioz.Rd | 2 man/ssd_hp.Rd | 4 man/ssd_hp_bcanz.Rd | 8 + man/ssd_plot_cdf.Rd | 9 +- src/TMB/ssdtools_TMBExports.cpp | 3 tests/testthat/_snaps/bcanz/hc_chloride.csv | 8 - tests/testthat/_snaps/bcanz/hp_chloride.csv | 2 tests/testthat/_snaps/bcanz/hp_chloride_proportion.csv | 2 tests/testthat/_snaps/plot-cdf/fits_average_est_method.png |only tests/testthat/helper.R | 2 tests/testthat/test-bcanz.R | 6 - tests/testthat/test-plot-cdf.R | 1 vignettes/ssdtools.Rmd | 2 30 files changed, 144 insertions(+), 89 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.1.7 dated 2026-01-27 and 1.1.8 dated 2026-03-05
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 5 +++++ inst/ext/renv.c | 28 +++++++++++++++++++++------- 4 files changed, 33 insertions(+), 14 deletions(-)
Title: Less Code with More Comprehensive Results
Description: Each function replaces multiple standard R functions. For example,
two function calls, Read() and CountAll(), generate summary statistics for
all variables in the data frame, plus histograms and bar charts. Other
functions provide data aggregation via pivot tables; comprehensive
regression, ANOVA, and t-test; visualizations including integrated
Violin/Box/Scatter plot for a numerical variable, bar chart, histogram,
box plot, density curves, calibrated power curve; reading multiple data
formats with the same call; variable labels; time series with aggregation
and forecasting; color themes; and Trellis (facet) graphics. Also includes
a confirmatory factor analysis of multiple-indicator measurement models,
pedagogical routines for data simulation (e.g., Central Limit Theorem),
generation and rendering of regression instructions for interpretative output,
and both interactive construction of visualizations and interactive
visualizations with plotly.
Author: David W. Gerbing [aut, cre]
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.5.1 dated 2026-01-22 and 4.5.2 dated 2026-03-05
lessR-4.5.1/lessR/R/plt.time_truncate_groups.R |only lessR-4.5.1/lessR/inst/img/bc2Explain.png |only lessR-4.5.2/lessR/DESCRIPTION | 6 lessR-4.5.2/lessR/MD5 | 76 ++--- lessR-4.5.2/lessR/NAMESPACE | 2 lessR-4.5.2/lessR/NEWS.md | 34 ++ lessR-4.5.2/lessR/R/Chart.R | 125 +++++---- lessR-4.5.2/lessR/R/Logit.R | 9 lessR-4.5.2/lessR/R/X.R | 12 lessR-4.5.2/lessR/R/XY.R | 7 lessR-4.5.2/lessR/R/bc.plotly.R | 44 ++- lessR-4.5.2/lessR/R/bubble.plotly.R | 139 +++++----- lessR-4.5.2/lessR/R/dn.plotly.R | 12 lessR-4.5.2/lessR/R/do.plotly.R | 126 ++++----- lessR-4.5.2/lessR/R/hier.plotly.R | 85 +++--- lessR-4.5.2/lessR/R/hs.plotly.R | 14 - lessR-4.5.2/lessR/R/hst.main.R | 15 - lessR-4.5.2/lessR/R/logit.4Pred.R | 33 +- lessR-4.5.2/lessR/R/piechart.plotly.R | 92 +++--- lessR-4.5.2/lessR/R/plt.by.legend.R | 17 - lessR-4.5.2/lessR/R/plt.forecast.R | 209 +++++++++------ lessR-4.5.2/lessR/R/plt.main.R | 14 - lessR-4.5.2/lessR/R/plt.plotly.R | 70 ++--- lessR-4.5.2/lessR/R/plt.time.R | 329 +++++++++++++++---------- lessR-4.5.2/lessR/R/radar.plotly.R | 84 +++--- lessR-4.5.2/lessR/R/savePlotly.R | 6 lessR-4.5.2/lessR/R/stats.R | 4 lessR-4.5.2/lessR/R/zzz.R | 2 lessR-4.5.2/lessR/R/zzz_plotly.R | 237 ++++++++++-------- lessR-4.5.2/lessR/R/zzz_ts.R | 31 +- lessR-4.5.2/lessR/data/dataStockPrice.rda |binary lessR-4.5.2/lessR/inst/doc/intro.Rmd | 6 lessR-4.5.2/lessR/inst/doc/intro.html | 251 ++++++++----------- lessR-4.5.2/lessR/inst/img/bcExplain.png |binary lessR-4.5.2/lessR/inst/img/bcXYExplain.png |binary lessR-4.5.2/lessR/inst/img/hsExplain.png |binary lessR-4.5.2/lessR/man/Chart.Rd | 2 lessR-4.5.2/lessR/man/Logit.Rd | 10 lessR-4.5.2/lessR/man/XY.Rd | 153 +++++++++-- lessR-4.5.2/lessR/vignettes/intro.Rmd | 6 40 files changed, 1306 insertions(+), 956 deletions(-)
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <doi:10.48550/arXiv.1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
fair-cut forest (Cortes (2021) <doi:10.48550/arXiv.2110.13402>),
robust random-cut forest (Guha, Mishra, Roy, Schrijvers (2016) <http://proceedings.mlr.press/v48/guha16.html>),
and customizable variations of them, for isolation-based outlier detection, clustered outlier detection,
distance or similarity approximation (Cortes (2019) <doi:10.48550/arXiv.1910.12362>),
isolation kernel calculation (Ting, Zhu, Zhou (2018) <doi:10.1145/3219819.3219990>),
and imputation of missing values (Cortes (2019) <doi:10.48550/arXiv.1911.06646>),
based on random or guided decision tree splitting, and providing different metrics for
scoring anomalies based on isolation depth or density (Co [...truncated...]
Author: David Cortes [aut, cre, cph],
Thibaut Goetghebuer-Planchon [cph] ,
David Blackman [cph] ,
Sebastiano Vigna [cph] ,
NumPy Developers [cph] ,
SciPy Developers [cph] ,
Enthought Inc [cph] ,
Stephen Moshier [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.6.1-4 dated 2025-01-08 and 0.6.1-5 dated 2026-03-05
DESCRIPTION | 6 - LICENSE | 2 MD5 | 72 ++++++++++----------- NAMESPACE | 5 + R/helpers.R | 2 R/isoforest.R | 28 ++++---- inst/doc/An_Introduction_to_Isolation_Forests.Rmd | 2 inst/doc/An_Introduction_to_Isolation_Forests.html | 2 man/isolation.forest.Rd | 20 ++--- man/isotree.export.model.Rd | 2 man/isotree.restore.handle.Rd | 2 man/predict.isolation_forest.Rd | 4 - src/Rwrapper.cpp | 12 +-- src/crit.h | 6 - src/dist.h | 6 - src/extended.h | 4 - src/external_facing_generic.h | 2 src/fit_model.h | 16 ++-- src/formatted_exporters.cpp | 2 src/headers_joined.h | 2 src/helpers_iforest.h | 2 src/impute.h | 4 - src/indexer.cpp | 2 src/instantiate_template_headers.h | 2 src/isoforest.h | 4 - src/isotree.h | 11 ++- src/isotree_exportable.h |only src/merge_models.cpp | 6 - src/mult.h | 2 src/oop_interface.h |only src/other_helpers.h | 2 src/predict.h | 4 - src/ref_indexer.h | 2 src/serialize.cpp | 2 src/sql.cpp | 59 ++++++++--------- src/subset_models.cpp | 6 - src/utils.h | 28 ++++---- vignettes/An_Introduction_to_Isolation_Forests.Rmd | 2 38 files changed, 171 insertions(+), 164 deletions(-)
Title: Constrained Generalized Additive Model
Description: A constrained generalized additive model is fitted by the cgam routine. Given a set of predictors, each of which may have a shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The ShapeSelect routine chooses a subset of predictor variables and describes the component relationships with the response. For each predictor, the user needs only specify a set of possible shape or order restrictions. A model selection method chooses the shapes and orderings of the relationships as well as the variables. The cone information criterion (CIC) is used to select the best combination of variables and shapes. A genetic algorithm may be used when the set of possible models is large. In addition, the cgam routine implements a two-dimensional isotonic regression using warped-plane splines without additivity assumptions. It can also fit a convex or concave regression surface with [...truncated...]
Author: Mary Meyer [aut],
Xiyue Liao [aut, cre]
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between cgam versions 1.31 dated 2026-02-08 and 1.32 dated 2026-03-05
cgam-1.31/cgam/man/ShapeSelect.Rd |only cgam-1.31/cgam/man/best.fit.Rd |only cgam-1.31/cgam/man/in.or.out.Rd |only cgam-1.31/cgam/man/shapes.Rd |only cgam-1.32/cgam/ChangeLog | 5 cgam-1.32/cgam/DESCRIPTION | 12 cgam-1.32/cgam/MD5 | 22 - cgam-1.32/cgam/NAMESPACE | 11 cgam-1.32/cgam/R/cgam.R | 580 ++++++++++++++---------------- cgam-1.32/cgam/R/cgamm.R | 180 ++++----- cgam-1.32/cgam/R/globals.R | 4 cgam-1.32/cgam/R/options.R |only cgam-1.32/cgam/R/shapeselect.R |only cgam-1.32/cgam/R/testpar.R | 335 +++++++++-------- cgam-1.32/cgam/man/shapeselect.Rd |only cgam-1.32/cgam/man/shapeselect_control.Rd |only 16 files changed, 587 insertions(+), 562 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-16 1.1.2
2018-05-24 1.1.1
2016-12-06 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-16 0.5.0
2020-08-17 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-09 0.1.2
2024-09-20 0.1.1
2024-07-03 0.1.0
Title: Statistical Tools for Assessing Publication Integrity of Groups
of Trials
Description: Takes user-provided baseline data from groups of randomised controlled data and
assesses whether the observed distribution of baseline p-values, numbers of participants
in each group, or categorical variables are consistent with the expected distribution, as
an aid to the assessment of integrity concerns in published randomised controlled trials.
References (citations in PubMed format in details of each function):
Bolland MJ, Avenell A, Gamble GD, Grey A. (2016) <doi:10.1212/WNL.0000000000003387>.
Bolland MJ, Gamble GD, Avenell A, Grey A, Lumley T. (2019)
<doi:10.1016/j.jclinepi.2019.05.006>.
Bolland MJ, Gamble GD, Avenell A, Grey A. (2019) <doi:10.1016/j.jclinepi.2019.03.001>.
Bolland MJ, Gamble GD, Grey A, Avenell A. (2020) <doi:10.1111/anae.15165>.
Bolland MJ, Gamble GD, Avenell A, Cooper DJ, Grey A. (2021)
<doi:10.1016/j.jclinepi.2020.11.012>.
Bolland MJ, Gamble GD, Avenell A, Grey A. (2021) <doi:10.1016/j.jclinepi.2021.05.002>.
Bolland MJ, Gambl [...truncated...]
Author: Mark Bolland [aut, cre, cph]
Maintainer: Mark Bolland <m.bolland@auckland.ac.nz>
Diff between reappraised versions 0.1.1 dated 2023-10-06 and 0.2 dated 2026-03-04
DESCRIPTION | 21 MD5 | 62 - NAMESPACE | 65 + NEWS.md | 10 R/baseline_pvalues_cat.R | 803 +++++-------------- R/baseline_pvalues_cont.R | 606 +++++++------- R/carlisle_anova.R | 527 ++++--------- R/cat_all.R | 813 +++++--------------- R/cat_fn.R | 360 ++++---- R/cohorts.R | 786 +++++++------------ R/common_fns.R | 976 ++++++++++++++---------- R/final_digit.R | 311 +++---- R/graph_maker.R |only R/helper_fns.R |only R/load_data.R | 1863 ++++++++++++++++++++-------------------------- R/matches.R | 480 ++++++----- R/simple_rand.R | 460 +++++------ R/sysdata.rda |only build/vignette.rds |binary inst/doc/reappraised.R | 83 +- inst/doc/reappraised.Rmd | 601 ++++++++------ inst/doc/reappraised.html | 845 ++++++++++++++++++-- man/anova_fn.Rd | 20 man/cat_all_fn.Rd | 60 - man/cat_fn.Rd | 3 man/cohort_fn.Rd | 4 man/final_digit_fn.Rd | 9 man/graph_maker_fn.Rd |only man/load_clean.Rd | 28 man/match_fn.Rd | 36 man/pval_cat_fn.Rd | 38 man/pval_cont_fn.Rd | 32 man/sr_fn.Rd | 3 vignettes/reappraised.Rmd | 601 ++++++++------ 34 files changed, 5171 insertions(+), 5335 deletions(-)
Title: Copula-Based Stochastic Frontier Models
Description: Provides estimation procedures for copula-based stochastic frontier
models for cross-sectional data. The package implements maximum likelihood
estimation of stochastic frontier models allowing flexible dependence
structures between inefficiency and noise terms through various copula
families (e.g., Gaussian and Student-t). It enables estimation of technical
efficiency scores, log-likelihood values, and information criteria (AIC and
BIC). The implemented framework builds upon stochastic frontier analysis
introduced by Aigner, Lovell and Schmidt (1977) <doi:10.1016/0304-4076(77)90052-5>
and the copula theory described in Joe (2014, ISBN:9781466583221).
Empirical applications of copula-based stochastic frontier models can be
found in Wiboonpongse et al. (2015) <doi:10.1016/j.ijar.2015.06.001> and
Maneejuk et al. (2017, ISBN:9783319562176).
Author: Woraphon Yamaka [aut, cre],
Paravee Maneejuk [aut],
Nuttaphong Kaewtathip [aut]
Maintainer: Woraphon Yamaka <woraphon.econ@gmail.com>
Diff between copulaSFM versions 0.1.0 dated 2026-02-18 and 0.2.0 dated 2026-03-04
DESCRIPTION | 10 - MD5 | 16 +- NEWS.md |only R/copulasfm.R | 313 ++++++++++++++++++++++++++++++++++++------------------- R/sim.R | 99 ++++++++++++++--- R/te.R | 153 +++++++++++++++++--------- inst |only man/copulasfm.Rd | 149 ++++++++++++++++++++++++-- man/sfa.simu.Rd | 98 ++++++++++++++++- man/te.Rd | 135 ++++++++++++++++++++--- 10 files changed, 747 insertions(+), 226 deletions(-)
Title: Empirical Likelihood with Current Status Data for Mean,
Probability, Hazard
Description: Compute the empirical likelihood ratio, -2LogLikRatio (Wilks) statistics,
based on current status data for the hypotheses about the parameters of mean
or probability or weighted cumulative hazard.
Author: Mai Zhou [aut, cre]
Maintainer: Mai Zhou <maizhou@gmail.com>
Diff between emplikCS versions 0.2 dated 2026-01-29 and 0.3 dated 2026-03-04
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++++---------- NAMESPACE | 2 +- R/L2S.R |only R/S2L.R |only README | 2 +- build/partial.rdb |binary man/CSbj.Rd | 16 ++++++++-------- man/CSdataclean.Rd | 9 +++++---- man/L2S.Rd |only man/S2L.Rd |only man/el.CS.2prob.Rd | 20 ++++++++++++++------ man/el.CS.mean.Rd | 16 +++++++++------- man/el.CS.prob.Rd | 24 ++++++++++++++++-------- man/isotNEW2.Rd | 6 +++--- 15 files changed, 75 insertions(+), 52 deletions(-)
Title: Two-Stage Difference-in-Differences Following Gardner (2021)
Description: Estimates Two-way Fixed Effects difference-in-differences/event-study models using the approach proposed by Gardner (2021) <doi:10.48550/arXiv.2207.05943>. To avoid the problems caused by OLS estimation of the Two-way Fixed Effects model, this function first estimates the fixed effects and covariates using untreated observations and then in a second stage, estimates the treatment effects.
Author: Kyle Butts [aut, cre] ,
John Gardner [aut] ,
Grant McDermott [ctb] ,
Laurent Berge [ctb]
Maintainer: Kyle Butts <buttskyle96@gmail.com>
Diff between did2s versions 1.2.0 dated 2025-09-19 and 1.2.1 dated 2026-03-04
DESCRIPTION | 6 ++--- MD5 | 24 +++++++++++----------- R/data.R | 3 +- R/did2s.R | 9 +++++--- build/vignette.rds |binary data/castle.rda |binary data/df_het.rda |binary data/df_hom.rda |binary inst/doc/Two-Stage-Difference-in-Differences.html | 8 +++---- man/castle.Rd | 3 +- man/did2s.Rd | 7 +++--- tests/testthat/test-did2s.R | 12 +++-------- tests/testthat/test-event-study.R | 3 -- 13 files changed, 38 insertions(+), 37 deletions(-)
Title: Interface to Download Meteorological (and Hydrological) Datasets
Description: Automatize downloading of meteorological and hydrological data from publicly available repositories:
OGIMET (<http://ogimet.com/index.phtml.en>),
University of Wyoming - atmospheric vertical profiling data (<http://weather.uwyo.edu/upperair/>),
Polish Institute of Meteorology and Water Management - National Research Institute (<https://danepubliczne.imgw.pl>),
and National Oceanic & Atmospheric Administration (NOAA).
This package also allows for searching geographical coordinates for each observation and calculate distances to the nearest stations.
Author: Bartosz Czernecki [aut, cre] ,
Arkadiusz Glogowski [aut] ,
Jakub Nowosad [aut] ,
IMGW-PIB [ctb]
Maintainer: Bartosz Czernecki <nwp@amu.edu.pl>
Diff between climate versions 1.2.9 dated 2026-02-03 and 1.3.0 dated 2026-03-04
climate-1.2.9/climate/inst/parser.R |only climate-1.3.0/climate/DESCRIPTION | 6 climate-1.3.0/climate/MD5 | 36 +- climate-1.3.0/climate/NAMESPACE | 1 climate-1.3.0/climate/NEWS.md | 13 climate-1.3.0/climate/R/clean_metadata_hydro.R | 24 - climate-1.3.0/climate/R/hydro_imgw_daily.R | 40 -- climate-1.3.0/climate/R/hydro_imgw_monthly.R | 20 - climate-1.3.0/climate/R/hydro_metadata_imgw.R | 6 climate-1.3.0/climate/R/match_imgw_wmoid_inds.R | 2 climate-1.3.0/climate/R/meteo_imgw.R | 7 climate-1.3.0/climate/R/meteo_imgw_daily.R | 1 climate-1.3.0/climate/R/meteo_imgw_hourly.R | 4 climate-1.3.0/climate/R/meteo_imgw_monthly.R | 27 - climate-1.3.0/climate/R/utils.R | 33 ++ climate-1.3.0/climate/inst/doc/getstarted.html | 329 +++----------------- climate-1.3.0/climate/man/find_all_station_names.Rd |only climate-1.3.0/climate/man/meteo_imgw.Rd | 7 climate-1.3.0/climate/man/meteo_imgw_hourly.Rd | 3 climate-1.3.0/climate/man/meteo_imgw_monthly.Rd | 4 20 files changed, 188 insertions(+), 375 deletions(-)
Title: A Collection of Large Language Model Assistants
Description: Provides a collection of ergonomic large language model assistants
designed to help you complete repetitive, hard-to-automate tasks quickly.
After selecting some code, press the keyboard shortcut you've chosen to
trigger the package app, select an assistant, and watch your chore be
carried out. While the package ships with a number of chore helpers for R
package development, users can create custom helpers just by writing some
instructions in a markdown file.
Author: Simon Couch [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between chores versions 0.3.0 dated 2025-12-09 and 0.3.1 dated 2026-03-04
DESCRIPTION | 6 - MD5 | 56 +++++++------- NEWS.md | 11 ++ R/doc-helper-cli.R | 10 +- R/doc-helper-roxygen.R | 12 +-- R/doc-helper-testthat.R | 10 +- R/helper-class.R | 2 R/init-helper.R | 26 ++++-- R/prompt.R | 22 ++++- README.md | 6 - inst/doc/chores.Rmd | 19 ++++ inst/doc/chores.html | 71 +++++++++++------- inst/doc/gallery.html | 114 ++++++++++++++--------------- man/cli_helper.Rd | 10 +- man/dot-init_helper.Rd | 26 ++++-- man/prompt.Rd | 5 + man/roxygen_helper.Rd | 12 +-- man/testthat_helper.Rd | 10 +- tests/testthat/_snaps/helper-add-remove.md | 4 - tests/testthat/_snaps/helper-class.md | 2 tests/testthat/_snaps/helper-init.md | 8 +- tests/testthat/_snaps/prompt.md | 18 ++++ tests/testthat/_snaps/utils.md | 6 - tests/testthat/test-helper-add-remove.R | 29 +++---- tests/testthat/test-helper-class.R | 14 ++- tests/testthat/test-helper-init.R | 8 +- tests/testthat/test-prompt.R | 19 ++++ tests/testthat/test-utils.R | 5 - vignettes/chores.Rmd | 19 ++++ 29 files changed, 348 insertions(+), 212 deletions(-)
Title: Bayesian Benefit Risk Analysis
Description: Quantitative methods for benefit-risk analysis help to condense
complex decisions into a univariate metric describing the overall benefit
relative to risk. One approach is to use the multi-criteria decision
analysis framework (MCDA), as in Mussen, Salek, and Walker
(2007) <doi:10.1002/pds.1435>. Bayesian benefit-risk
analysis incorporates uncertainty through posterior distributions which are
inputs to the benefit-risk framework. The brisk package provides functions
to assist with Bayesian benefit-risk analyses, such as MCDA.
Users input posterior samples, utility functions, weights, and the package
outputs quantitative benefit-risk scores. The posterior of the benefit-risk
scores for each group can be compared. Some plotting capabilities are also
included.
Author: Richard Payne [aut, cre],
Sai Dharmarajan [rev],
Eli Lilly and Company [cph]
Maintainer: Richard Payne <paynestatistics@gmail.com>
Diff between brisk versions 0.1.0 dated 2022-08-31 and 0.1.1 dated 2026-03-04
DESCRIPTION | 12 MD5 | 48 - NAMESPACE | 2 NEWS.md |only R/benefit_risk.R | 14 R/imports.R | 2 R/plot.R | 8 README.md | 24 build/vignette.rds |binary inst/doc/random_weights.R | 2 inst/doc/random_weights.html | 502 +++++++++++----- inst/hex-brisk.png |only man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-11-2.png |binary man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-12-2.png |binary man/figures/README-unnamed-chunk-12-3.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary tests/testthat/_snaps/plot/plot-ref.png |binary tests/testthat/_snaps/plot/plot-utility-ref.png |binary tests/testthat/_snaps/plot/plot-utility-stacked-ref.png |binary tests/testthat/_snaps/plot/plot-utility-stacked.png |binary tests/testthat/_snaps/plot/plot-utility.png |binary tests/testthat/_snaps/plot/plot.png |binary tests/testthat/test-summary.R | 2 26 files changed, 417 insertions(+), 199 deletions(-)
Title: A Magical Framework for Collaborative & Reproducible Data
Analysis
Description: A comprehensive data analysis framework for NIH-funded research that streamlines workflows for both data cleaning and preparing NIH Data Archive ('NDA') submission templates. Provides unified access to multiple data sources ('REDCap', 'MongoDB', 'Qualtrics', 'SQL', 'ORACLE') through interfaces to their APIs, with specialized functions for data cleaning, filtering, merging, and parsing. Features automatic validation, field harmonization, and memory-aware processing to enhance reproducibility in multi-site collaborative research as described in Mittal et al. (2021) <doi:10.20900/jpbs.20210011>.
Author: Joshua G. Kenney [aut, cre],
Trevor F. Williams [aut],
Minerva K. Pappu [aut],
Michael J. Spilka [aut],
Danielle N. Pratt [ctb],
Victor J. Pokorny [ctb],
Santiago Castiello de Obeso [ctb],
Praveen Suthaharan [ctb],
Christian R. Horgan [ctb]
Maintainer: Joshua G. Kenney <joshua.kenney@yale.edu>
Diff between wizaRdry versions 0.6.4 dated 2026-02-03 and 0.6.5 dated 2026-03-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/NdaClasses.R | 3 +++ R/getMongo.R | 4 +++- man/wizaRdry-package.Rd | 2 +- 5 files changed, 15 insertions(+), 10 deletions(-)
Title: Efficient Implementation of K-Means++ Algorithm
Description: Efficient implementation of K-Means++ algorithm. For more
information see (1) "kmeans++ the advantages of the k-means++
algorithm" by David Arthur and Sergei Vassilvitskii (2007),
Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete
algorithms, Society for Industrial and Applied Mathematics,
Philadelphia, PA, USA, pp. 1027-1035, and (2) "The Effectiveness of
Lloyd-Type Methods for the k-Means Problem" by Rafail Ostrovsky, Yuval
Rabani, Leonard J. Schulman and Chaitanya Swamy
<doi:10.1145/2395116.2395117>.
Author: Aviezer Lifshitz [aut, cre],
Amos Tanay [aut],
Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between tglkmeans versions 0.5.8 dated 2026-01-14 and 0.6.1 dated 2026-03-04
DESCRIPTION | 19 ++-- MD5 | 92 +++++++++++--------- NAMESPACE | 16 --- NEWS.md | 14 +++ R/TGL_kmeans.R | 163 ++++++++++++++++++++++++++++++++----- R/intra_clustering.R | 7 - R/misc.R | 2 R/tests.R | 26 +++++ R/tglkmeans-package.R | 9 -- R/utils-pipe.R | 1 R/zzz.R | 4 inst/doc/usage.R | 8 - inst/doc/usage.Rmd | 10 +- inst/doc/usage.html | 26 ++--- man/TGL_kmeans.Rd | 9 +- man/TGL_kmeans_tidy.Rd | 9 +- man/match_clusters.Rd |only man/pipe.Rd | 3 man/predict_tgl_kmeans.Rd |only man/test_clustering.Rd |only man/tglkmeans.set_parallel.Rd | 2 src/AParamStat.cpp | 2 src/AParamStat.h | 20 ++-- src/AddCoreWorker.h |only src/DownsampleWorker.cpp | 8 - src/IndirectSort.h | 5 - src/KMeans.cpp | 137 +++++++++++++++++++++++-------- src/KMeans.h | 26 ++--- src/KMeansCenterBase.cpp | 2 src/KMeansCenterBase.h | 18 ++-- src/KMeansCenterMean.cpp | 2 src/KMeansCenterMean.h | 18 ++-- src/KMeansCenterMeanEuclid.cpp | 4 src/KMeansCenterMeanEuclid.h | 2 src/KMeansCenterMeanPearson.cpp | 13 ++ src/KMeansCenterMeanPearson.h | 4 src/KMeansCenterMeanSpearman.cpp | 27 +++++- src/KMeansCenterMeanSpearman.h | 15 ++- src/Ranking.cpp | 4 src/Ranking.h | 5 - src/ReassignWorker.cpp | 34 +++++++ src/ReassignWorker.h | 14 ++- src/TGLkmeans.cpp | 14 ++- src/UpdateMinDistanceWorker.cpp | 39 +++----- src/UpdateMinDistanceWorker.h | 22 +--- tests/testthat.R | 1 tests/testthat/helper-regression.R |only tests/testthat/test-clustering.R | 72 ++++++++++++++++ tests/testthat/test-regression.R |only vignettes/usage.Rmd | 10 +- 50 files changed, 653 insertions(+), 285 deletions(-)
Title: A Graph-Based Cross-Fitting Engine in R
Description: Provides a general cross-fitting engine for semiparametric estimation
(e.g., double/debiased machine learning). Supports user-defined target
functionals and directed acyclic graphs of nuisance learners with per-node
training fold widths, target-specific evaluation windows, and
fold-allocation modes ("overlap", "disjoint", "independence"). Returns
either numeric estimates (mode = "estimate") or cross-fitted prediction
functions (mode = "predict"), with configurable aggregation over panels
and repetitions, reuse-aware caching, and failure isolation, making it
well-suited for simulation studies and large benchmarks.
Author: Etienne Peyrot [aut, cre]
Maintainer: Etienne Peyrot <etienne.peyrot@inserm.fr>
Diff between crossfit versions 0.1.1 dated 2026-02-19 and 0.1.3 dated 2026-03-04
DESCRIPTION | 29 - MD5 | 12 NEWS.md | 14 R/engine.R | 1350 ++++++++++++++++++++++++++--------------------------- README.md | 40 + build/vignette.rds |binary man/crossfit.Rd | 2 7 files changed, 732 insertions(+), 715 deletions(-)
Title: Functions to Calculate Optimal Fourth Down Decisions in the
National Football League
Description: A set of functions to estimate outcomes of fourth down plays
in the National Football League and obtain fourth down plays from
<https://www.nfl.com/> and <https://www.espn.com/>.
Author: Ben Baldwin [aut, cre, cph],
Sebastian Carl [ctb]
Maintainer: Ben Baldwin <bbaldwin206@gmail.com>
Diff between nfl4th versions 1.0.6 dated 2026-02-17 and 1.0.7 dated 2026-03-04
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NEWS.md | 4 ++++ R/cache.R | 17 +++++++++++------ R/get_game_data.R | 2 ++ R/sysdata.rda |binary R/table_functions.R | 6 ++++-- R/wrapper.R | 6 ++++-- R/zzz.R | 8 ++++---- man/add_2pt_probs.Rd | 3 ++- man/add_4th_probs.Rd | 3 ++- man/get_4th_plays.Rd | 2 ++ man/make_2pt_table_data.Rd | 3 ++- man/make_table_data.Rd | 3 ++- 14 files changed, 55 insertions(+), 34 deletions(-)
Title: Simulate Impact of Different Urban Policies Through a General
Equilibrium Model
Description: Develops a General Equilibrium (GE) Model, which estimates key variables such as wages, the number of residents and workers, the prices of the floor space, and its distribution between commercial and residential use, as in Ahlfeldt et al., (2015) <doi:10.3982/ECTA10876>. By doing so, the model allows understanding the economic influence of different urban policies.
Author: David Zarruk [aut],
Roman Zarate [aut, cre]
Maintainer: Roman Zarate <rd.zarate40@gmail.com>
Diff between IGC.CSM versions 0.3.0 dated 2026-02-12 and 0.3.1 dated 2026-03-04
DESCRIPTION | 8 MD5 | 31 +- R/NoPricesInversionModel.R | 331 ++++++++++++------------- R/PricesInversionModel.R | 8 R/av_income_simple.R | 22 - R/commuting_matrix.R | 18 - R/density_development.R | 60 ++-- R/density_development_noprices.R |only R/inversionModel.R | 366 ++++++++++++++-------------- R/living_amenities_simple.R | 82 +++--- R/productivity.R | 64 ++-- R/solveModel.R | 504 ++++++++++++++++++--------------------- R/wages_inversion.R | 152 +++++------ README.md | 83 +++++- man/PricesInversionModel.Rd | 22 - man/inversionModel.Rd | 6 man/solveModel.Rd | 12 17 files changed, 902 insertions(+), 867 deletions(-)
Title: Techniques to Build Better Balance
Description: Build better balance in causal inference models. 'halfmoon'
helps you assess propensity score models for balance between groups
using metrics like standardized mean differences and visualization
techniques like mirrored histograms. 'halfmoon' supports both
weighting and matching techniques.
Author: Malcolm Barrett [aut, cre, cph]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between halfmoon versions 0.1.0 dated 2023-05-30 and 0.2.0 dated 2026-03-04
DESCRIPTION | 20 MD5 | 318 ++++++- NAMESPACE | 71 + NEWS.md |only R/add_ess_header.R |only R/autoplot-methods.R |only R/bal_ess.R |only R/bal_model_auc.R |only R/bal_model_roc_curve.R |only R/bal_prognostic_score.R |only R/bal_qq.R |only R/check_balance.R |only R/check_ess.R |only R/check_model_auc.R |only R/check_qq.R |only R/compute_balance.R |only R/compute_balance_categorical.R |only R/data.R | 30 R/ess.R |only R/geom_calibration.R |only R/geom_ecdf.R | 49 + R/geom_mirrored_density.R |only R/geom_mirrored_histogram.R | 126 ++ R/geom_qq2.R |only R/geom_roc.R |only R/plot_balance.R |only R/plot_calibration.R |only R/plot_ess.R |only R/plot_mirror_distributions.R |only R/plot_qq.R |only R/plot_roc.R |only R/plot_stratified_residuals.R |only R/tidysmd-rexports.R | 1 R/utils-ci.R |only R/utils-documentation.R |only R/utils-group.R |only R/utils-validation.R |only R/utils.R | 292 ++++++ R/zzz.R |only README.md | 135 ++- build |only data/nhefs_weights.rda |binary man/add_ess_header.Rd |only man/autoplot-halfmoon.Rd |only man/bal_corr.Rd |only man/bal_energy.Rd |only man/bal_ess.Rd |only man/bal_ks.Rd |only man/bal_model_auc.Rd |only man/bal_model_roc_curve.Rd |only man/bal_prognostic_score.Rd |only man/bal_qq.Rd |only man/bal_smd.Rd |only man/bal_vr.Rd |only man/balance_params.Rd |only man/calculate_normal_ci.Rd |only man/calculate_prop_ci.Rd |only man/check_balance.Rd |only man/check_ess.Rd |only man/check_model_auc.Rd |only man/check_model_calibration.Rd |only man/check_model_roc_curve.Rd |only man/check_params.Rd |only man/check_qq.Rd |only man/ess.Rd |only man/figures/README-balance-example-1.png |only man/figures/README-calibration-example-1.png |only man/figures/README-example-1.png |binary man/figures/README-example-2.png |binary man/figures/README-example-3.png |binary man/figures/README-qq-example-1.png |only man/figures/README-roc-example-1.png |only man/figures/README-roc-example-2.png |only man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/geom_calibration.Rd |only man/geom_ecdf.Rd | 105 ++ man/geom_mirror_density.Rd |only man/geom_mirror_histogram.Rd | 71 + man/geom_qq2.Rd |only man/geom_roc.Rd |only man/get_z_score.Rd |only man/ggplot2_params.Rd |only man/nhefs_weights.Rd | 30 man/plot-halfmoon.Rd |only man/plot_balance.Rd |only man/plot_ess.Rd |only man/plot_mirror_distributions.Rd |only man/plot_model_auc.Rd |only man/plot_model_calibration.Rd |only man/plot_model_roc_curve.Rd |only man/plot_qq.Rd |only man/plot_stratified_residuals.Rd |only man/stat_qq2.Rd |only man/stat_roc.Rd |only man/treatment_param.Rd |only man/weighted_quantile.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/add_ess_header.md |only tests/testthat/_snaps/autoplot-methods |only tests/testthat/_snaps/bal_model_auc.md |only tests/testthat/_snaps/bal_model_roc_curve.md |only tests/testthat/_snaps/bal_prognostic_score.md |only tests/testthat/_snaps/bal_qq.md |only tests/testthat/_snaps/check_balance.md |only tests/testthat/_snaps/check_ess.md |only tests/testthat/_snaps/check_model_auc.md |only tests/testthat/_snaps/compute_balance.md |only tests/testthat/_snaps/compute_balance_categorical.md |only tests/testthat/_snaps/compute_qq.md |only tests/testthat/_snaps/error-messages.md |only tests/testthat/_snaps/geom_calibration |only tests/testthat/_snaps/geom_calibration.md |only tests/testthat/_snaps/geom_mirrored_density |only tests/testthat/_snaps/geom_mirrored_density.md |only tests/testthat/_snaps/geom_mirrored_histogram.md | 12 tests/testthat/_snaps/geom_mirrored_histogram/layered-weighted-and-unweighted.svg | 438 ++++------ tests/testthat/_snaps/geom_qq2 |only tests/testthat/_snaps/geom_roc |only tests/testthat/_snaps/plot_balance |only tests/testthat/_snaps/plot_balance.md |only tests/testthat/_snaps/plot_calibration |only tests/testthat/_snaps/plot_ess |only tests/testthat/_snaps/plot_mirror_distributions |only tests/testthat/_snaps/plot_mirror_distributions.md |only tests/testthat/_snaps/plot_qq |only tests/testthat/_snaps/plot_qq.md |only tests/testthat/_snaps/plot_roc |only tests/testthat/_snaps/plot_roc.md |only tests/testthat/_snaps/plot_stratified_residuals |only tests/testthat/_snaps/plot_stratified_residuals.md |only tests/testthat/helper-snapshot.R |only tests/testthat/helper-suppress-warnings.R |only tests/testthat/helper-vdiffr.R | 4 tests/testthat/test-add_ess_header.R |only tests/testthat/test-autoplot-methods.R |only tests/testthat/test-bal_ess.R |only tests/testthat/test-bal_model_auc.R |only tests/testthat/test-bal_model_roc_curve.R |only tests/testthat/test-bal_prognostic_score.R |only tests/testthat/test-bal_qq.R |only tests/testthat/test-check_balance.R |only tests/testthat/test-check_balance_interactions.R |only tests/testthat/test-check_ess.R |only tests/testthat/test-check_model_auc.R |only tests/testthat/test-compute_balance.R |only tests/testthat/test-compute_balance_categorical.R |only tests/testthat/test-compute_qq.R |only tests/testthat/test-error-messages.R |only tests/testthat/test-ess.R |only tests/testthat/test-extract_weight_data.R |only tests/testthat/test-geom_calibration.R |only tests/testthat/test-geom_ecdf.R | 2 tests/testthat/test-geom_mirrored_density.R |only tests/testthat/test-geom_mirrored_histogram.R | 12 tests/testthat/test-geom_qq2.R |only tests/testthat/test-geom_roc.R |only tests/testthat/test-numeric-psw-equivalence.R |only tests/testthat/test-plot_balance.R |only tests/testthat/test-plot_calibration.R |only tests/testthat/test-plot_ess.R |only tests/testthat/test-plot_mirror_distributions.R |only tests/testthat/test-plot_qq.R |only tests/testthat/test-plot_roc.R |only tests/testthat/test-plot_stratified_residuals.R |only tests/testthat/test-utils-ci.R |only 167 files changed, 1343 insertions(+), 373 deletions(-)
Title: Confirmatory Adaptive Clinical Trial Design and Analysis
Description: Design and analysis of confirmatory adaptive clinical trials with continuous, binary, and survival endpoints according to the methods described in the monograph by Wassmer and Brannath (2025) <doi:10.1007/978-3-031-89669-9>. This includes classical group sequential as well as multi-stage adaptive hypotheses tests that are based on the combination testing principle.
Author: Gernot Wassmer [aut] ,
Friedrich Pahlke [aut, cre] ,
Till Jensen [ctb],
Daniel Sabanes Bove [ctb] ,
Stephen Schueuerhuis [ctb] ,
Tobias Muetze [ctb] ,
RPACT GmbH [cph, fnd]
Maintainer: Friedrich Pahlke <friedrich.pahlke@rpact.com>
Diff between rpact versions 4.3.0 dated 2025-12-16 and 4.4.0 dated 2026-03-04
DESCRIPTION | 24 MD5 | 161 +++--- NAMESPACE | 8 NEWS.md | 39 + R/RcppExports.R | 632 ++++++++++++++++++++++++++ R/class_analysis_dataset.R | 253 +++++----- R/class_analysis_results.R | 207 ++++---- R/class_analysis_stage_results.R | 141 ++--- R/class_core_parameter_set.R | 478 ++++++++++--------- R/class_core_plot_settings.R | 27 - R/class_design.R | 73 +-- R/class_design_plan.R | 100 +--- R/class_design_power_and_asn.R | 19 R/class_design_set.R | 215 ++++---- R/class_dictionary.R | 14 R/class_event_probabilities.R | 88 +-- R/class_simulation_results.R | 64 +- R/class_summary.R | 71 +- R/class_time.R | 331 +++++++------ R/f_analysis_base.R | 101 +--- R/f_analysis_base_means.R | 91 +-- R/f_analysis_base_rates.R | 131 +---- R/f_analysis_base_survival.R | 77 +-- R/f_analysis_boundary_recalculation.R | 30 - R/f_analysis_enrichment.R | 52 +- R/f_analysis_enrichment_means.R | 365 +++++++-------- R/f_analysis_enrichment_rates.R | 443 ++++++++++-------- R/f_analysis_enrichment_survival.R | 384 ++++++++------- R/f_analysis_multiarm.R | 16 R/f_analysis_multiarm_means.R | 294 ++++++------ R/f_analysis_multiarm_rates.R | 55 +- R/f_analysis_multiarm_survival.R | 25 - R/f_analysis_utilities.R | 78 +-- R/f_as251.R | 4 R/f_core_assertions.R | 459 +++++++++++-------- R/f_core_constants.R | 14 R/f_core_output_formats.R | 118 ++-- R/f_core_plot.R | 299 ++++++------ R/f_core_utilities.R | 111 +--- R/f_design_fisher_combination_test.R | 109 ++-- R/f_design_futility_bounds.R | 4 R/f_design_general_utilities.R | 144 +++++ R/f_design_group_sequential.R | 200 ++++---- R/f_design_plan_counts.R | 104 ++-- R/f_design_plan_means.R | 35 - R/f_design_plan_plot.R | 258 +++++----- R/f_design_plan_rates.R | 74 +-- R/f_design_plan_survival.R | 227 +++++---- R/f_design_plan_utilities.R | 6 R/f_io_utilities.R |only R/f_logger.R | 4 R/f_object_r_code.R | 36 - R/f_parameter_set_utilities.R | 17 R/f_quality_assurance.R | 409 +++++++++++----- R/f_simulation_base_counts.R | 22 R/f_simulation_base_means.R | 39 - R/f_simulation_base_rates.R | 54 +- R/f_simulation_base_survival.R | 64 +- R/f_simulation_calc_subjects_function.R | 16 R/f_simulation_enrichment.R | 157 +++--- R/f_simulation_enrichment_means.R | 151 +++--- R/f_simulation_enrichment_rates.R | 150 +++--- R/f_simulation_enrichment_survival.R | 135 ++--- R/f_simulation_multiarm.R | 190 ++++--- R/f_simulation_multiarm_means.R | 11 R/f_simulation_multiarm_rates.R | 25 - R/f_simulation_multiarm_survival.R | 26 - R/f_simulation_performance_score.R | 9 R/f_simulation_plot.R | 100 ++-- R/f_simulation_utilities.R | 96 ++- R/parameter_descriptions.R | 38 - R/pkgname.R | 29 - inst/CITATION | 63 +- inst/WORDLIST | 174 ++++--- inst/doc/rpact_getting_started.html | 4 inst/tests/META | 2 man/fetch.ParameterSet.Rd | 2 man/readKeyValueFile.Rd |only man/rpact.Rd | 2 man/testPackage.Rd | 15 man/utilitiesForSurvivalTrials.Rd | 27 - man/writeKeyValueFile.Rd |only src/f_design_group_sequential.cpp | 770 ++++++++++++++++++++++++++++---- 83 files changed, 6042 insertions(+), 4048 deletions(-)
Title: Accessing the Official 'Google Knowledge Graph' API
Description: A simple way to interact with and extract data from
the official 'Google Knowledge Graph' API <https://developers.google.com/knowledge-graph/>.
Author: Ricardo Correia [aut, cre]
Maintainer: Ricardo Correia <rahc85@gmail.com>
Diff between gkgraphR versions 1.0.2 dated 2021-03-01 and 1.0.3 dated 2026-03-04
DESCRIPTION | 11 MD5 | 12 NEWS.md | 20 - README.md | 101 +++--- build/vignette.rds |binary inst/doc/gkgraphR.R | 76 ++-- inst/doc/gkgraphR.html | 808 ++++++++++++++++++++++++++----------------------- 7 files changed, 539 insertions(+), 489 deletions(-)
Title: Read 'CEP' and Legacy 'CANOCO' Files
Description: Read Condensed Cornell Ecology Program ('CEP') and legacy
'CANOCO' files into R data frames.
Author: Jari Oksanen [aut, cre] ,
Gavin L. Simpson [aut]
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between cepreader versions 1.2-2 dated 2023-06-25 and 1.3-0 dated 2026-03-04
DESCRIPTION | 11 ++++---- MD5 | 15 ++++++------ R/readCEP.R | 42 ++++++++++++++++++++++------------ inst/NEWS.md | 10 ++++++++ inst/README.md |only man/readCEP.Rd | 33 +++++++++++++++++--------- src/Makefile | 1 src/Makefile.win | 3 -- tests/Examples/cepreader-Ex.Rout.save | 19 +++++++++++---- 9 files changed, 90 insertions(+), 44 deletions(-)
Title: Tidy and Streamlined Metabolomics Data Workflows
Description: Facilitate tasks typically encountered during metabolomics data analysis including data import, filtering, missing value imputation (Stacklies et al. (2007) <doi:10.1093/bioinformatics/btm069>, Stekhoven et al. (2012) <doi:10.1093/bioinformatics/btr597>, Tibshirani et al. (2017) <doi:10.18129/B9.BIOC.IMPUTE>, Troyanskaya et al. (2001) <doi:10.1093/bioinformatics/17.6.520>), normalization (Bolstad et al. (2003) <doi:10.1093/bioinformatics/19.2.185>, Dieterle et al. (2006) <doi:10.1021/ac051632c>, Zhao et al. (2020) <doi:10.1038/s41598-020-72664-6>) transformation, centering and scaling (Van Den Berg et al. (2006) <doi:10.1186/1471-2164-7-142>) as well as statistical tests and plotting. 'metamorphr' introduces a tidy (Wickham et al. (2019) <doi:10.21105/joss.01686>) format for metabolomics data and is designed to make it easier to build elaborate analysis workflows and to integrate them with 'tidyverse' packages including 'dplyr' and [...truncated...]
Author: Yannik Schermer [aut, cre, cph]
Maintainer: Yannik Schermer <yannik.schermer@chem.rptu.de>
Diff between metamorphr versions 0.2.0 dated 2025-10-09 and 0.3.0 dated 2026-03-04
DESCRIPTION | 18 ++++----- MD5 | 57 +++++++++++++++++------------- NAMESPACE | 3 + NEWS.md | 12 +++++- R/internal_functions.R | 14 ++++++- R/io.R | 7 ++- R/metamorphr-package.R | 1 R/misc.R | 33 ----------------- R/msn.R |only R/normalize.R | 2 - R/sysdata.rda |binary README.md | 6 +-- inst/doc/conjugate-screening.R | 2 - inst/doc/conjugate-screening.Rmd | 4 +- inst/doc/conjugate-screening.html | 10 ++--- inst/doc/metamorphr.html | 2 - man/calc_neutral_loss.Rd | 6 ++- man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/figures/logo.png |binary man/metamorphr-package.Rd | 1 man/msn_calc_nl.Rd |only man/msn_scale.Rd |only man/normalize_pqn.Rd | 2 - man/read_mgf.Rd | 7 ++- tests/testthat/data/test_read_mgf_tab.mgf |only tests/testthat/test-calc_neutral_loss.R | 14 +++++-- tests/testthat/test-filter_neutral_loss.R | 12 +++--- tests/testthat/test-msn_scale.R |only tests/testthat/test-normalize_pqn.R | 41 +++++++++------------ tests/testthat/test-read_mgf.R | 7 +++ vignettes/conjugate-screening.Rmd | 4 +- 34 files changed, 141 insertions(+), 124 deletions(-)
Title: Credential Chain for Seamless 'OAuth 2.0' Authentication to
'Azure Services'
Description: Implements a credential chain for 'Azure OAuth 2.0' authentication
based on the package 'httr2''s 'OAuth' framework. Sequentially attempts authentication
methods until one succeeds. During development allows interactive
browser-based flows ('Device Code' and 'Auth Code' flows) and non-interactive
flow ('Client Secret') in batch mode.
Author: Pedro Baltazar [aut, cre]
Maintainer: Pedro Baltazar <pedrobtz@gmail.com>
Diff between azr versions 0.3.0 dated 2026-02-17 and 0.3.1 dated 2026-03-04
DESCRIPTION | 6 MD5 | 38 ++-- NEWS.md | 4 R/credential-azure-cli.R | 199 +++++++++++------------ R/credential-interactive.R | 339 +++++++++++++++++++++++++--------------- R/credential.R | 10 - R/default-credential.R | 6 R/defaults.R | 4 R/zzz.R | 2 man/AuthCodeCredential.Rd | 51 ------ man/AzureCLICredential.Rd | 22 ++ man/DeviceCodeCredential.Rd | 51 ------ man/InteractiveCredential.Rd | 112 +++++++++++++ man/az_cli_account_show.Rd | 13 - man/az_cli_get_cached_token.Rd | 15 - man/az_cli_get_token.Rd | 18 -- man/az_cli_is_login.Rd | 11 - man/az_cli_login.Rd | 13 - man/az_cli_logout.Rd | 7 man/default_credential_chain.Rd | 2 20 files changed, 499 insertions(+), 424 deletions(-)
Title: Access Data from the 'Kolada' Database
Description: Methods for downloading and processing data and metadata from 'Kolada', the official Swedish regions and municipalities database <https://www.kolada.se/>.
Author: Love Hansson [aut, cre, cph]
Maintainer: Love Hansson <love.hansson@gmail.com>
Diff between rKolada versions 0.2.3 dated 2024-05-14 and 0.3.0 dated 2026-03-04
DESCRIPTION | 19 MD5 | 123 +- NAMESPACE | 72 - NEWS.md | 109 +- R/aaa_utils.R | 196 ++-- R/available.R | 66 - R/data.R | 705 ++++++++------- R/glue.R | 126 +- R/higher_order_metadata.R | 48 - R/kpi.R | 476 ++++------ R/kpi_groups.R | 288 +++--- R/metadata.R | 611 +++++++------ R/municipality.R | 364 +++----- R/municipality_grp.R | 284 +++--- R/ou.R | 90 - R/rKolada.R | 26 R/table_specs.R | 10 README.md | 80 - build/vignette.rds |binary inst/doc/a-quickstart-rkolada.R | 142 +-- inst/doc/a-quickstart-rkolada.Rmd | 288 +++--- inst/doc/a-quickstart-rkolada.html | 1088 ++++++++++++------------ inst/doc/introduction-to-rkolada.R | 228 ++--- inst/doc/introduction-to-rkolada.Rmd | 448 ++++----- inst/doc/introduction-to-rkolada.html | 1536 +++++++++++++++++----------------- man/allowed_entities.Rd | 30 man/compose_data_query.Rd | 98 +- man/compose_metadata_query.Rd | 87 + man/generate_kpi_metadata.Rd | 34 man/get_kpi.Rd | 194 ++-- man/get_metadata.Rd | 131 +- man/get_values.Rd | 156 +-- man/kolada_available.Rd | 24 man/kpi_bind_keywords.Rd | 64 - man/kpi_describe.Rd | 72 - man/kpi_extract_ids.Rd | 80 - man/kpi_grp_describe.Rd | 72 - man/kpi_grp_extract_ids.Rd | 40 man/kpi_grp_search.Rd | 80 - man/kpi_grp_unnest.Rd | 76 - man/kpi_minimize.Rd | 55 - man/kpi_search.Rd | 88 - man/municipality_extract_ids.Rd | 62 - man/municipality_grp_describe.Rd | 74 - man/municipality_grp_extract_ids.Rd | 40 man/municipality_grp_search.Rd | 50 - man/municipality_grp_unnest.Rd | 80 - man/municipality_id_to_name.Rd | 76 - man/municipality_name_to_id.Rd | 78 - man/municipality_search.Rd | 86 - man/ou_search.Rd | 86 - man/pipe.Rd | 26 man/values_legend.Rd | 48 - man/values_minimize.Rd | 64 - tests/testthat.R | 8 tests/testthat/test-api-live.R |only tests/testthat/test-api-mocked.R |only tests/testthat/test-data-helpers.R |only tests/testthat/test-groups.R |only tests/testthat/test-kpi.R |only tests/testthat/test-municipality.R |only tests/testthat/test-query-composers.R |only tests/testthat/test-search.R |only tests/testthat/test-utils.R |only tests/testthat/test_api.R | 12 vignettes/a-quickstart-rkolada.Rmd | 288 +++--- vignettes/introduction-to-rkolada.Rmd | 448 ++++----- 67 files changed, 5240 insertions(+), 5090 deletions(-)
Title: Holistic Multimodel Domain Analysis for Exploratory Machine
Learning
Description: Holistic Multimodel Domain Analysis (HMDA) is a robust and transparent framework designed for exploratory machine learning research, aiming to enhance the process of feature assessment and selection. HMDA addresses key limitations of traditional machine learning methods by evaluating the consistency across multiple high-performing models within a fine-tuned modeling grid, thereby improving the interpretability and reliability of feature importance assessments. Specifically, it computes Weighted Mean SHapley Additive exPlanations (WMSHAP), which aggregate feature contributions from multiple models based on weighted performance metrics. HMDA also provides confidence intervals to demonstrate the stability of these feature importance estimates. This framework is particularly beneficial for analyzing complex, multidimensional datasets common in health research, supporting reliable exploration of mental health outcomes such as suicidal ideation, suicide attempts, and other psychological cond [...truncated...]
Author: E. F. Haghish [aut, cre, cph]
Maintainer: E. F. Haghish <haghish@hotmail.com>
Diff between HMDA versions 0.2.0 dated 2026-02-16 and 0.3.0 dated 2026-03-04
DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++---------- NAMESPACE | 2 ++ R/hmda.best.models.R | 10 +++++----- R/hmda.domain.R | 7 +++---- R/hmda.grid.R | 2 ++ R/hmda.plot.R | 16 ++++++++-------- R/hmda.plot.metrics.R | 44 +++++++++++++++++++++++--------------------- R/hmda.row.plot.R |only man/hmda.best.models.Rd | 10 +++++----- man/hmda.domain.Rd | 7 +++---- man/hmda.plot.metrics.Rd | 31 +++++++++++++++++-------------- man/hmda.row.plot.Rd |only 13 files changed, 84 insertions(+), 75 deletions(-)
Title: Interface for the 'Finnish Biodiversity Information Facility'
API
Description: A programmatic interface to the 'Finnish Biodiversity Information
Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates
Finnish biodiversity data from multiple sources in a single open access
portal for researchers, citizen scientists, industry and government.
'FinBIF' allows users of biodiversity information to find, access, combine
and visualise data on Finnish plants, animals and microorganisms. The
'finbif' package makes the publicly available data in 'FinBIF' easily
accessible to programmers. Biodiversity information is available on taxonomy
and taxon occurrence. Occurrence data can be filtered by taxon, time,
location and other variables. The data accessed are conveniently
preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph] ,
Finnish Biodiversity Information Facility [cph] ,
William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>
Diff between finbif versions 0.9.12 dated 2026-01-27 and 0.9.13 dated 2026-03-04
DESCRIPTION | 8 MD5 | 86 NAMESPACE | 15 NEWS.md | 22 R/api_get.R | 123 R/finbif-package.R | 2 R/finbif_check_taxa.R | 4 R/finbif_collections.R | 14 R/finbif_occurrence.R | 10 R/finbif_occurrence_load.R | 37 R/finbif_records.R | 2 R/finbif_request_token.R | 58 R/finbif_taxa.R | 2 R/sysdata.R | 13 R/utils.R | 23 R/zzz.R | 2 README.md | 2 man/finbif-package.Rd | 2 tests/fixtures/finbif_cache_db_timeout.yml | 100 tests/fixtures/finbif_cache_file_timeout.yml | 100 tests/fixtures/finbif_cache_timeout.yml | 100 tests/fixtures/finbif_check_taxa.yml | 36 tests/fixtures/finbif_collections.yml | 2987 +++++-- tests/fixtures/finbif_informal_groups.yml | 6 tests/fixtures/finbif_last_mod1.yml | 8 tests/fixtures/finbif_last_mod2.yml | 8 tests/fixtures/finbif_last_mod3.yml | 8 tests/fixtures/finbif_metadata.yml | 482 - tests/fixtures/finbif_occurrence.yml | 3884 ++++++---- tests/fixtures/finbif_occurrence_aggregate.yml | 101 tests/fixtures/finbif_occurrence_api_error.yml | 16 tests/fixtures/finbif_occurrence_compute_var_from_id_zero_rows.yml | 3027 +++++-- tests/fixtures/finbif_occurrence_dates.yml | 217 tests/fixtures/finbif_occurrence_load.yml | 392 - tests/fixtures/finbif_occurrence_print.yml | 24 tests/fixtures/finbif_occurrence_select_local_area.yml | 8 tests/fixtures/finbif_taxa.yml | 40 tests/testthat/_snaps/caching.md | 93 tests/testthat/_snaps/finbif_collections.md | 546 - tests/testthat/_snaps/finbif_metadata.md | 1 tests/testthat/_snaps/finbif_occurrence.md | 110 tests/testthat/_snaps/finbif_occurrence_load.md | 6 tests/testthat/test-finbif_request_token.R | 29 tests/testthat/test-finbif_taxa.R | 6 44 files changed, 8493 insertions(+), 4267 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-19 1.6.2
2025-11-11 1.6.1
2025-07-29 1.6.0
2025-06-12 1.5.3
2025-05-04 1.5.2
2025-05-01 1.5.1
2025-03-17 1.5.0
2024-01-21 1.4.0
2023-09-11 1.3.0
2023-01-08 1.2.0
2022-06-10 1.1.0
2021-11-06 1.0.6
2021-10-29 1.0.5
2021-10-25 1.0.4
2021-09-03 1.0.3
2021-04-21 1.0.2
2021-03-02 1.0.1
2021-03-01 1.0.0
Title: Optimal Histogram Binning Using Shimazaki-Shinomoto Method
Description: Implements the Shimazaki-Shinomoto method for optimizing the
bin width of a histogram. This method minimizes the mean integrated
squared error (MISE) and features a 'C++' backend for high performance
and shift-averaging to remove edge-position bias. Ideally suits for
time-dependent rate estimation and identifying intrinsic data
structures. Supports both 1D and 2D data distributions. For more
details see Shimazaki and Shinomoto (2007) "A Method for Selecting the
Bin Size of a Time Histogram" <doi:10.1162/neco.2007.19.6.1503>.
Author: Daniil Popov [aut, cre]
Maintainer: Daniil Popov <popov.daniil@gmail.com>
Diff between sshist versions 0.1.2 dated 2026-02-13 and 0.1.3 dated 2026-03-04
DESCRIPTION | 21 +++++++++++---------- MD5 | 14 +++++++------- NEWS.md | 15 +++++++++++++++ R/sshist.R | 18 +++++++++--------- README.md | 14 +++++++++++--- inst/doc/introduction.html | 12 ++++++------ man/figures/README-example-1d-1.png |binary man/figures/README-example-1d-ggplot-1.png |binary 8 files changed, 59 insertions(+), 35 deletions(-)
Title: A 'HTTP' Server Graphics Device
Description: A graphics device for R that is accessible via network protocols.
This package was created to make it easier to embed live R graphics in
integrated development environments and other applications.
The included 'HTML/JavaScript' client (plot viewer) aims to provide a better overall user experience when dealing with R graphics.
The device asynchronously serves graphics via 'HTTP' and 'WebSockets'.
Author: Florian Rupprecht [aut, cre] ,
Kun Ren [ctb],
Jeroen Ooms [ctb]
Maintainer: Florian Rupprecht <floruppr@gmail.com>
This is a re-admission after prior archival of version 2.0.4 dated 2025-03-15
Diff between httpgd versions 2.0.4 dated 2025-03-15 and 2.1.4 dated 2026-03-04
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httpgd-2.1.4/httpgd/vignettes/a00_installation.Rmd | 55 httpgd-2.1.4/httpgd/vignettes/a01_how-to-get-started.Rmd | 113 httpgd-2.1.4/httpgd/vignettes/b01_vscode.Rmd | 28 httpgd-2.1.4/httpgd/vignettes/b02_rstudio.Rmd | 109 httpgd-2.1.4/httpgd/vignettes/b03_docker.Rmd | 164 httpgd-2.1.4/httpgd/vignettes/c01_httpgd-api.Rmd | 413 +- 102 files changed, 8181 insertions(+), 7601 deletions(-)
Title: Tools to Use and Explore the 'BioTIME' Database
Description: The 'BioTIME' database was first published in
2018 and inspired ideas, questions, project and research
article. To make it even more accessible, an R package
was created.
The 'BioTIMEr' package provides tools designed to interact with the
'BioTIME' database. The functions provided include the 'BioTIME' recommended
methods for preparing (gridding and rarefaction) time series data, a
selection of standard biodiversity metrics (including species richness,
numerical abundance and exponential Shannon) alongside examples on how to
display change over time. It also includes a sample subset of both the query
and meta data, the full versions of which are freely available on the 'BioTIME'
website <https://biotime.st-andrews.ac.uk/home.php>.
Author: Alban Sagouis [aut, cre] ,
Faye Moyes [aut] ,
Ines S. Martins [aut, rev] ,
Shane A. Blowes [ctb] ,
Viviana Brambilla [ctb] ,
Cher F. Y. Chow [ctb] ,
Ada Fontrodona-Eslava [ctb] ,
Laura Antao [ctb, rev] ,
Jonathan M. Chase [fnd] ,
Maria Dornelas [fnd, [...truncated...]
Maintainer: Alban Sagouis <alban.sagouis@idiv.de>
Diff between BioTIMEr versions 0.3.1 dated 2026-02-10 and 0.3.2 dated 2026-03-04
DESCRIPTION | 9 - MD5 | 18 +- NEWS.md | 8 - R/data.R | 2 data/BTsubset_data.RData |binary data/BTsubset_meta.RData |binary inst/doc/introduction.html | 244 +++++++++++++++++++++++++++------ man/BTsubset_meta.Rd | 2 tests/testthat/testdata/data-meta.rds |binary tests/testthat/testdata/data-query.rds |binary 10 files changed, 224 insertions(+), 59 deletions(-)
More information about ExpressionCellNet at CRAN
Permanent link
Title: Regression Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as linear regression, penalized regression, k-nearest neighbors, decision trees, ada boosting, extreme gradient boosting, random forest, neural networks, deep learning and support vector machines.
Author: Oldemar Rodriguez [aut, cre],
Andres Navarro D. [ctb, prg],
Diego Jimenez A. [ctb, prg],
Ariel Arroyo S. [ctb, prg],
Joseline Quiros M. [ctb, prg],
Alejandro Vargas V. [ctb, prg],
Jennifer Lobo V. [ctb, prg]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
This is a re-admission after prior archival of version 4.0.7 dated 2025-12-22
Diff between regressoR versions 4.0.7 dated 2025-12-22 and 4.0.8 dated 2026-03-04
DESCRIPTION | 6 MD5 | 16 R/mod_ind_nuevos.R | 1684 +++++++++++++++++++++++------------------------ R/mod_ind_nuevos_utils.R | 114 +-- R/mod_information_page.R | 76 +- R/mod_model_boost_fct.R | 240 +++--- R/mod_model_rndf_fct.R | 308 ++++---- R/regressoR.R | 4 man/regressoR.Rd | 4 9 files changed, 1226 insertions(+), 1226 deletions(-)
Title: Predictive Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as K-Nearest Neighbors, Decision Trees, ADA Boosting, Extreme Gradient Boosting, Random Forest, Neural Networks, Deep Learning, Support Vector Machines and Bayesian Methods.
Author: Oldemar Rodriguez [aut, cre],
Diego Jimenez [ctb, prg],
Andres Navarro [ctb, prg],
Jennifer Lobo [ctb, prg]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
This is a re-admission after prior archival of version 4.1.6 dated 2025-12-22
Diff between predictoR versions 4.1.6 dated 2025-12-22 and 4.1.7 dated 2026-03-04
DESCRIPTION | 6 MD5 | 8 R/mod_models_utils.R | 1124 +++++++++++++++++++++++++-------------------------- R/predictoR.R | 4 man/predictoR.Rd | 4 5 files changed, 573 insertions(+), 573 deletions(-)
Title: Nonparametric Methods for Generating High Quality Comparative
Effectiveness Evidence
Description: Implements novel nonparametric approaches to address
biases and confounding when comparing treatments or exposures in
observational studies of outcomes. While designed and appropriate for use
in studies involving medicine and the life sciences, the package can be
used in other situations involving outcomes with multiple confounders.
The package implements a family of methods for non-parametric bias correction
when comparing treatments in observational studies, including survival
analysis settings, where competing risks and/or censoring may be present.
The approach extends to bias-corrected personalized predictions of treatment
outcome differences, and analysis of heterogeneity of treatment effect-sizes
across patient subgroups. For further details, please see:
Lauve NR, Nelson SJ, Young SS, Obenchain RL, Lambert CG. LocalControl:
An R Package for Comparative Safety and Effectiveness Research.
Journal of Statistical Software. 2020. p. 1–32. Available from <doi:10.18637/jss.v096.i04&g [...truncated...]
Author: Nicolas R. Lauve [aut] ,
Stuart J. Nelson [aut] ,
S. Stanley Young [aut] ,
Robert L. Obenchain [aut] ,
Melania Pintilie [ctb],
Martin Kutz [ctb],
Christophe G. Lambert [aut, cre]
Maintainer: Christophe G. Lambert <cglambert@salud.unm.edu>
Diff between LocalControl versions 1.1.4 dated 2024-09-04 and 1.1.7 dated 2026-03-04
LocalControl-1.1.4/LocalControl/inst/doc/LocalControl-jss-2020.R |only LocalControl-1.1.4/LocalControl/inst/doc/LocalControl-jss-2020.Rnw |only LocalControl-1.1.4/LocalControl/vignettes/LocalControl-jss-2020.Rnw |only LocalControl-1.1.4/LocalControl/vignettes/LocalControl.bib |only LocalControl-1.1.4/LocalControl/vignettes/calcs |only LocalControl-1.1.7/LocalControl/DESCRIPTION | 25 ++-- LocalControl-1.1.7/LocalControl/MD5 | 61 +++++----- LocalControl-1.1.7/LocalControl/NEWS.md | 24 +++ LocalControl-1.1.7/LocalControl/build/vignette.rds |binary LocalControl-1.1.7/LocalControl/inst/doc/LocalControl-jss-2020.pdf |binary LocalControl-1.1.7/LocalControl/inst/doc/LocalControl-jss-2020.pdf.asis |only LocalControl-1.1.7/LocalControl/inst/vignette-source |only LocalControl-1.1.7/LocalControl/src/LocalControl.cpp | 5 LocalControl-1.1.7/LocalControl/vignettes/LocalControl-jss-2020.pdf.asis |only 14 files changed, 71 insertions(+), 44 deletions(-)
Title: Inflation Adjustment for Historical Currency Values
Description: Convert historical monetary values into their present-day equivalents
using bundled CPI (Consumer Price Index) and GDP deflator data sourced from the
World Bank Development Indicators. Supports British pounds (GBP), Australian
dollars (AUD), US dollars (USD), Euro (EUR), Canadian dollars (CAD), Japanese
yen (JPY), Chinese yuan (CNY), Swiss francs (CHF), New Zealand dollars (NZD),
Indian rupees (INR), South Korean won (KRW), Brazilian reais (BRL), and
Norwegian krone (NOK). Currency codes and country names are both accepted as
input.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between inflateR versions 0.1.1 dated 2026-03-03 and 0.1.3 dated 2026-03-04
DESCRIPTION | 20 +-- MD5 | 58 ++++++++- NAMESPACE | 2 NEWS.md | 12 ++ R/adjust.R | 22 ++- R/adjust_real.R |only R/data.R | 254 +++++++++++++++++++++++++++++++++++++++++++ R/globals.R | 6 - R/historical_real.R |only R/historical_value.R | 17 ++ README.md | 281 ++++++++++++++++++++---------------------------- data/aud_gdp_def.rda |only data/brl_cpi.rda |only data/brl_gdp_def.rda |only data/cad_gdp_def.rda |only data/chf_gdp_def.rda |only data/cny_gdp_def.rda |only data/eur_gdp_def.rda |only data/inr_cpi.rda |only data/inr_gdp_def.rda |only data/jpy_gdp_def.rda |only data/krw_cpi.rda |only data/krw_gdp_def.rda |only data/nok_cpi.rda |only data/nok_gdp_def.rda |only data/nzd_cpi.rda |only data/nzd_gdp_def.rda |only data/uk_gdp_def.rda |only data/usd_gdp_def.rda |only man/adjust_inflation.Rd | 5 man/adjust_real.Rd |only man/aud_gdp_def.Rd |only man/brl_cpi.Rd |only man/brl_gdp_def.Rd |only man/cad_gdp_def.Rd |only man/chf_gdp_def.Rd |only man/cny_gdp_def.Rd |only man/eur_gdp_def.Rd |only man/historical_real.Rd |only man/inr_cpi.Rd |only man/inr_gdp_def.Rd |only man/jpy_gdp_def.Rd |only man/krw_cpi.Rd |only man/krw_gdp_def.Rd |only man/nok_cpi.Rd |only man/nok_gdp_def.Rd |only man/nzd_cpi.Rd |only man/nzd_gdp_def.Rd |only man/uk_gdp_def.Rd |only man/usd_gdp_def.Rd |only 50 files changed, 485 insertions(+), 192 deletions(-)
Title: Aggregated Latent Space Index for Binary, Ordinal, and
Continuous Data
Description: Provides three stability-validated pipelines for computing an
Aggregated Latent Space Index (ALSI): a binary MCA pipeline
(alsi_workflow()), an ordinal pipeline using homals alternating least
squares optimal scaling (alsi_workflow_ordinal()), and a continuous
ipsatized SVD pipeline (calsi_workflow()). All three pipelines share
a common bootstrap dual-criterion stability framework (principal angles
and Tucker congruence phi) for determining the number of dimensions
to retain before index construction. The package is designed to
complement Segmented Profile Analysis (SEPA) and is intended for
psychometric scale construction and dimensional reduction in survey
and clinical research.
Author: Se-Kang Kim [aut, cre]
Maintainer: Se-Kang Kim <se-kang.kim@bcm.edu>
Diff between alsi versions 0.1.3 dated 2026-02-19 and 0.2.0 dated 2026-03-04
alsi-0.1.3/alsi/NEWS.md |only alsi-0.1.3/alsi/R/alsi.R |only alsi-0.1.3/alsi/README.md |only alsi-0.1.3/alsi/man/dot-read_xlsx.Rd |only alsi-0.1.3/alsi/man/make_disjunctive.Rd |only alsi-0.1.3/alsi/man/mca_indicator.Rd |only alsi-0.1.3/alsi/man/summarise_matrix.Rd |only alsi-0.1.3/alsi/man/to01.Rd |only alsi-0.2.0/alsi/DESCRIPTION | 48 ++++++++++------- alsi-0.2.0/alsi/LICENSE |only alsi-0.2.0/alsi/MD5 | 54 ++++++++++++------- alsi-0.2.0/alsi/NAMESPACE | 25 ++++++++ alsi-0.2.0/alsi/R/binary.R |only alsi-0.2.0/alsi/R/continuous.R |only alsi-0.2.0/alsi/R/data.R | 53 ++++++++---------- alsi-0.2.0/alsi/R/ordinal.R |only alsi-0.2.0/alsi/R/utils.R |only alsi-0.2.0/alsi/inst |only alsi-0.2.0/alsi/man/ANR2.Rd | 56 ++++++++------------ alsi-0.2.0/alsi/man/alsi.Rd | 2 alsi-0.2.0/alsi/man/alsi_workflow.Rd | 2 alsi-0.2.0/alsi/man/alsi_workflow_ordinal.Rd |only alsi-0.2.0/alsi/man/calsi.Rd |only alsi-0.2.0/alsi/man/calsi_vs_sepa_demo.Rd |only alsi-0.2.0/alsi/man/calsi_workflow.Rd |only alsi-0.2.0/alsi/man/compare_sepa_calsi.Rd |only alsi-0.2.0/alsi/man/dot-alsi_fit_homals.Rd |only alsi-0.2.0/alsi/man/dot-alsi_make_disjunctive.Rd |only alsi-0.2.0/alsi/man/dot-alsi_mca_indicator.Rd |only alsi-0.2.0/alsi/man/dot-alsi_read_xlsx.Rd |only alsi-0.2.0/alsi/man/dot-alsi_summarise_matrix.Rd |only alsi-0.2.0/alsi/man/dot-alsi_svd_ipsatized.Rd |only alsi-0.2.0/alsi/man/dot-alsi_to01.Rd |only alsi-0.2.0/alsi/man/mca_align.Rd | 2 alsi-0.2.0/alsi/man/mca_bootstrap.Rd | 2 alsi-0.2.0/alsi/man/mca_pa.Rd | 2 alsi-0.2.0/alsi/man/plot_category_projections.Rd | 2 alsi-0.2.0/alsi/man/plot_domain_loadings.Rd |only alsi-0.2.0/alsi/man/plot_subspace_stability.Rd | 2 alsi-0.2.0/alsi/man/plot_subspace_stability_cont.Rd |only alsi-0.2.0/alsi/man/svd_align.Rd |only alsi-0.2.0/alsi/man/svd_bootstrap.Rd |only alsi-0.2.0/alsi/man/svd_pa.Rd |only alsi-0.2.0/alsi/tests |only 44 files changed, 144 insertions(+), 106 deletions(-)
Title: Interface to Swiss Parliament Web Services and the
'OpenParlData' API
Description: Provides machine-readable access to parliamentary data of the
Swiss Federal Assembly via the 'OData' interface (<https://ws.parlament.ch/odata.svc/>)
and the 'OpenParlData' REST API (<https://api.openparldata.ch>), which also
offers harmonized data for selected cantonal and municipal parliaments.
Author: David Zumbach [aut, cre],
Benjamin Gfoehler [ctb]
Maintainer: David Zumbach <david.zumbach@gfzb.ch>
Diff between swissparl versions 0.2.2 dated 2021-11-02 and 0.3.0 dated 2026-03-04
swissparl-0.2.2/swissparl/man/swissparl.Rd |only swissparl-0.3.0/swissparl/DESCRIPTION | 25 +- swissparl-0.3.0/swissparl/LICENSE |only swissparl-0.3.0/swissparl/MD5 | 46 ++-- swissparl-0.3.0/swissparl/NAMESPACE | 10 + swissparl-0.3.0/swissparl/R/get_data.R | 185 +++++++++++++++++++ swissparl-0.3.0/swissparl/R/get_glimpse.R | 36 +++ swissparl-0.3.0/swissparl/R/get_overview.R | 59 +++++- swissparl-0.3.0/swissparl/R/get_tables.R | 39 +++- swissparl-0.3.0/swissparl/R/get_variables.R | 66 +++++- swissparl-0.3.0/swissparl/R/swissparl.R | 9 swissparl-0.3.0/swissparl/R/utils_check.R | 19 + swissparl-0.3.0/swissparl/R/utils_get_data.R | 145 ++++++++++++++ swissparl-0.3.0/swissparl/man/clean_text.Rd | 52 ++--- swissparl-0.3.0/swissparl/man/get_data.Rd | 162 ++++++++-------- swissparl-0.3.0/swissparl/man/get_data2.Rd |only swissparl-0.3.0/swissparl/man/get_glimpse.Rd | 56 ++--- swissparl-0.3.0/swissparl/man/get_glimpse2.Rd |only swissparl-0.3.0/swissparl/man/get_overview.Rd | 46 ++-- swissparl-0.3.0/swissparl/man/get_overview2.Rd |only swissparl-0.3.0/swissparl/man/get_related_data2.Rd |only swissparl-0.3.0/swissparl/man/get_related_tables2.Rd |only swissparl-0.3.0/swissparl/man/get_tables.Rd | 2 swissparl-0.3.0/swissparl/man/get_tables2.Rd |only swissparl-0.3.0/swissparl/man/get_variables.Rd | 57 +++-- swissparl-0.3.0/swissparl/man/get_variables2.Rd |only swissparl-0.3.0/swissparl/man/ggswissparl.Rd | 126 ++++++------ swissparl-0.3.0/swissparl/man/seating_plan.Rd | 56 ++--- swissparl-0.3.0/swissparl/man/swissparl-package.Rd |only 29 files changed, 873 insertions(+), 323 deletions(-)
Title: Multivariate Regression Association Measure
Description: Implementations of an estimator for the multivariate regression association measure (MRAM) proposed in Shih and Chen (2026) <doi:10.1016/j.csda.2025.108288> and its associated variable selection algorithm. The MRAM quantifies the predictability of a random vector Y from a random vector X given a random vector Z. It takes the maximum value 1 if and only if Y is almost surely a measurable function of X and Z, and the minimum value of 0 if Y is conditionally independent of X given Z. The MRAM generalizes the Kendall's tau copula correlation ratio proposed in Shih and Emura (2021) <doi:10.1016/j.jmva.2020.104708> by employing the spatial sign function. The estimator is based on the nearest neighbor method, and the associated variable selection algorithm is adapted from the feature ordering by conditional independence (FOCI) algorithm of Azadkia and Chatterjee (2021) <doi:10.1214/21-AOS2073>. For further details, see the paper Shih and Chen (2026) <doi:10.1016/j.csda.20 [...truncated...]
Author: Jia-Han Shih [aut, cre],
Yi-Hau Chen [aut]
Maintainer: Jia-Han Shih <jhshih@math.nsysu.edu.tw>
Diff between MRAM versions 1.0.0 dated 2026-01-07 and 1.0.1 dated 2026-03-04
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/mram.R | 4 +++- R/vs_mram.R | 2 +- man/mram.Rd | 2 +- man/vs_mram.Rd | 2 +- 6 files changed, 14 insertions(+), 12 deletions(-)
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Author: Jari Oksanen [aut, cre],
Gavin L. Simpson [aut],
F. Guillaume Blanchet [aut],
Roeland Kindt [aut],
Pierre Legendre [aut],
Peter R. Minchin [aut],
R.B. O'Hara [aut],
Peter Solymos [aut],
M. Henry H. Stevens [aut],
Eduard Szoecs [aut],
Helene Wagner [a [...truncated...]
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between vegan versions 2.7-2 dated 2025-10-08 and 2.7-3 dated 2026-03-04
vegan-2.7-2/vegan/man/ordixyplot.Rd |only vegan-2.7-3/vegan/DESCRIPTION | 6 vegan-2.7-3/vegan/MD5 | 75 +-- vegan-2.7-3/vegan/NEWS.md | 55 ++ vegan-2.7-3/vegan/R/decostand.R | 37 - vegan-2.7-3/vegan/R/metaMDS.R | 7 vegan-2.7-3/vegan/R/metaMDSdist.R | 4 vegan-2.7-3/vegan/R/optspace.R | 81 ++-- vegan-2.7-3/vegan/R/ordixyplot.R | 1 vegan-2.7-3/vegan/R/permustats.R | 4 vegan-2.7-3/vegan/R/plot.poolaccum.R | 1 vegan-2.7-3/vegan/R/plot.renyi.R | 3 vegan-2.7-3/vegan/R/plot.renyiaccum.R | 3 vegan-2.7-3/vegan/R/vegdist.R | 16 vegan-2.7-3/vegan/R/wisconsin.R | 6 vegan-2.7-3/vegan/build/partial.rdb |binary vegan-2.7-3/vegan/build/vignette.rds |binary vegan-2.7-3/vegan/inst/doc/FAQ-vegan.html | 6 vegan-2.7-3/vegan/inst/doc/decision-vegan.pdf |binary vegan-2.7-3/vegan/inst/doc/diversity-vegan.pdf |binary vegan-2.7-3/vegan/inst/doc/intro-vegan.Rnw | 4 vegan-2.7-3/vegan/inst/doc/intro-vegan.pdf |binary vegan-2.7-3/vegan/inst/doc/partitioning.pdf |binary vegan-2.7-3/vegan/man/MOStest.Rd | 3 vegan-2.7-3/vegan/man/SSarrhenius.Rd | 15 vegan-2.7-3/vegan/man/decostand.Rd | 4 vegan-2.7-3/vegan/man/oecosimu.Rd | 9 vegan-2.7-3/vegan/man/optspace.Rd | 19 vegan-2.7-3/vegan/man/ordipointlabel.Rd | 12 vegan-2.7-3/vegan/man/permustats.Rd | 54 -- vegan-2.7-3/vegan/man/permutest.betadisper.Rd | 5 vegan-2.7-3/vegan/man/renyi.Rd | 35 - vegan-2.7-3/vegan/man/specpool.Rd | 16 vegan-2.7-3/vegan/man/tsallis.Rd | 13 vegan-2.7-3/vegan/man/vegan-deprecated-lattice.Rd | 106 ++++- vegan-2.7-3/vegan/man/vegdist.Rd | 8 vegan-2.7-3/vegan/src/vegdist.c | 25 - vegan-2.7-3/vegan/tests/decostand-tests.Rout.save | 438 ++++++++++------------ vegan-2.7-3/vegan/vignettes/intro-vegan.Rnw | 4 39 files changed, 586 insertions(+), 489 deletions(-)
Title: Tidy Standardized Mean Differences
Description: Tidy standardized mean differences ('SMDs'). 'tidysmd' uses
the 'smd' package to calculate standardized mean differences for
variables in a data frame, returning the results in a tidy format.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between tidysmd versions 0.2.0 dated 2023-05-26 and 0.2.1 dated 2026-03-04
DESCRIPTION | 19 - MD5 | 38 +-- NAMESPACE | 1 NEWS.md | 2 R/geom_love.R | 37 ++- R/matches.R | 3 R/tidysmd.R | 139 +++++++++-- README.md | 27 +- data/nhefs_weights.rda |binary inst/WORDLIST | 1 man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/geom_love.Rd | 16 + man/tidy_smd.Rd | 8 tests/spelling.R | 9 tests/testthat/_snaps/geom_love/geom-love-works.svg | 16 - tests/testthat/_snaps/geom_love/love-plot-works.svg | 16 - tests/testthat/test-tidysmd.R | 242 ++++++++++++++++---- 20 files changed, 444 insertions(+), 130 deletions(-)
Title: Tidy C++ Header-Only Definitions for Parts of the C API of R
Description: Core parts of the C API of R are wrapped in a C++ namespace via a set
of inline functions giving a tidier representation of the underlying data structures
and functionality using a header-only implementation without additional dependencies.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between tidyCpp versions 0.0.8 dated 2025-11-26 and 0.0.9 dated 2026-03-04
ChangeLog | 53 ++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 8 +++--- MD5 | 23 +++++++++--------- README.md | 3 +- build/partial.rdb |binary inst/NEWS.Rd | 18 +++++++++++++- inst/doc/motivation.html | 21 ++++++++-------- inst/doc/motivation.md | 16 ++++++------ inst/include/tidy/defines.h | 6 +++- inst/include/tidy/internals.h | 24 ++++++++++++------- inst/include/tidy/math.h | 2 - vignettes/motivation.md | 16 ++++++------ vignettes/update_vignette.sh |only 13 files changed, 136 insertions(+), 54 deletions(-)
Title: Interface to the 'SymEngine' Library
Description: Provides an R interface to 'SymEngine' <https://github.com/symengine/>,
a standalone 'C++' library for fast symbolic manipulation. The package has functionalities
for symbolic computation like calculating exact mathematical expressions, solving
systems of linear equations and code generation.
Author: Jialin Ma [cre, aut],
Isuru Fernando [aut],
Xin Chen [aut]
Maintainer: Jialin Ma <marlin@inventati.org>
Diff between symengine versions 0.2.10 dated 2025-04-04 and 0.2.11 dated 2026-03-04
DESCRIPTION | 6 +- MD5 | 10 ++-- build/vignette.rds |binary src/upstream.tar |binary tools/bundle_symengine_source.sh | 3 - tools/symengine_patch.diff | 94 ++++++++++++++++----------------------- 6 files changed, 48 insertions(+), 65 deletions(-)
Title: Weighted Mean SHAP and CI for Robust Feature Assessment in ML
Grid
Description: This R package introduces Weighted Mean SHapley Additive exPlanations (WMSHAP), an innovative method for calculating SHAP values for a grid of fine-tuned base-learner machine learning models as well as stacked ensembles, a method not previously available due to the common reliance on single best-performing models. By integrating the weighted mean SHAP values from individual base-learners comprising the ensemble or individual base-learners in a tuning grid search, the package weights SHAP contributions according to each model's performance, assessed by multiple either R squared (for both regression and classification models). alternatively, this software also offers weighting SHAP values based on the area under the precision-recall curve (AUCPR), the area under the curve (AUC), and F2 measures for binary classifiers. It further extends this framework to implement weighted confidence intervals for weighted mean SHAP values, offering a more comprehensive and robust feature importance eval [...truncated...]
Author: E. F. Haghish [aut, cre, cph]
Maintainer: E. F. Haghish <haghish@hotmail.com>
Diff between shapley versions 0.6.0 dated 2026-02-13 and 0.7.0 dated 2026-03-04
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/shapley.domain.R | 6 +++--- R/shapley.domain.test.R | 2 +- R/shapley.feature.test.R | 2 +- R/shapley.row.plot.R | 30 ++++++++++++++++++++++++++++-- man/shapley.row.plot.Rd | 15 ++++++++++++++- 7 files changed, 56 insertions(+), 17 deletions(-)
Title: Generalized Random Forests
Description: Forest-based statistical estimation and inference.
GRF provides non-parametric methods for heterogeneous treatment effects estimation
(optionally using right-censored outcomes, multiple treatment arms or outcomes, or instrumental variables),
as well as least-squares regression, quantile regression, and survival regression,
all with support for missing covariates.
Author: Julie Tibshirani [aut],
Susan Athey [aut],
Rina Friedberg [ctb],
Vitor Hadad [ctb],
David Hirshberg [ctb],
Luke Miner [ctb],
Erik Sverdrup [aut, cre],
Stefan Wager [aut],
Marvin Wright [ctb]
Maintainer: Erik Sverdrup <erik.sverdrup@monash.edu>
Diff between grf versions 2.6.0 dated 2026-03-03 and 2.6.1 dated 2026-03-04
DESCRIPTION | 6 ++--- MD5 | 12 +++++----- inst/doc/grf_guide.pdf |binary src/src/forest/ForestTrainer.cpp | 2 - src/src/prediction/collector/DefaultPredictionCollector.cpp | 2 - src/src/prediction/collector/OptimizedPredictionCollector.cpp | 2 - src/src/prediction/collector/TreeTraverser.cpp | 2 - 7 files changed, 13 insertions(+), 13 deletions(-)
Title: Access to 'GeographicLib'
Description: Bindings to the 'GeographicLib' C++ library
<https://geographiclib.sourceforge.io/> for precise geodetic calculations
including geodesic computations (distance, bearing, paths, intersections),
map projections (UTM/UPS, Transverse Mercator, Lambert Conformal Conic,
and more), grid reference systems (MGRS, Geohash, GARS, Georef),
coordinate conversions (geocentric, local Cartesian), and polygon area
on the WGS84 ellipsoid. All functions are fully vectorized.
Author: Michael Sumner [cre, aut],
Charles Karney [cph, aut] ,
Mark Borgerding [cph] )
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between geographiclib versions 0.4.1 dated 2026-02-27 and 0.4.2 dated 2026-03-04
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ inst/doc/geographiclib-overview.html | 6 +++--- tests/testthat/test-cassini.R | 18 +++++++++--------- 5 files changed, 24 insertions(+), 19 deletions(-)
Title: Advanced Forest Plot Using 'grid' Graphics
Description: Allows the creation of forest plots with advanced features, such as
multiple confidence intervals per row, customizable fonts for individual text
elements, and flexible confidence interval drawing. It also supports mixing
text with mathematical expressions. The package extends the application of
forest plots beyond traditional meta-analyses, offering a more general version
of the original 'rmeta' package’s forestplot() function. It relies heavily on
the 'grid' package for rendering the plots.
Author: Max Gordon [aut, cre],
Thomas Lumley [aut, ctb]
Maintainer: Max Gordon <max@gforge.se>
Diff between forestplot versions 3.1.7 dated 2025-06-12 and 3.2.0 dated 2026-03-04
forestplot-3.1.7/forestplot/R/data-HRQoL.R |only forestplot-3.2.0/forestplot/DESCRIPTION | 21 forestplot-3.2.0/forestplot/MD5 | 279 - forestplot-3.2.0/forestplot/NAMESPACE | 116 forestplot-3.2.0/forestplot/NEWS.md | 327 - forestplot-3.2.0/forestplot/R/assertAndRetrieveTidyValue.R | 86 forestplot-3.2.0/forestplot/R/data-descriptions.R |only forestplot-3.2.0/forestplot/R/drawForestplotObject.R | 422 + forestplot-3.2.0/forestplot/R/forestplot-package.R | 60 forestplot-3.2.0/forestplot/R/forestplot.R | 352 - forestplot-3.2.0/forestplot/R/forestplot.data.frame.R | 122 forestplot-3.2.0/forestplot/R/forestplot.default.R | 425 - forestplot-3.2.0/forestplot/R/forestplot.grouped_df.R | 434 + forestplot-3.2.0/forestplot/R/forestplot_helpers.R | 2268 +++++----- forestplot-3.2.0/forestplot/R/fp_add_lines.R | 172 forestplot-3.2.0/forestplot/R/fp_decorate_graph.R | 385 + forestplot-3.2.0/forestplot/R/fp_extract_labeltext.R |only forestplot-3.2.0/forestplot/R/fp_insert_row.R | 571 +- forestplot-3.2.0/forestplot/R/fp_set_style.R | 110 forestplot-3.2.0/forestplot/R/fp_set_zebra_style.R | 156 forestplot-3.2.0/forestplot/R/getTicks.R | 194 forestplot-3.2.0/forestplot/R/grid_helpers.R | 42 forestplot-3.2.0/forestplot/R/plotConfidenceInterval.R | 306 - forestplot-3.2.0/forestplot/R/prFpDrawLegend.R | 398 - forestplot-3.2.0/forestplot/R/prFpGetGraphTicksAndClips.R | 508 +- forestplot-3.2.0/forestplot/R/prepGridMargins.R | 40 forestplot-3.2.0/forestplot/R/private.R | 1835 ++++---- forestplot-3.2.0/forestplot/R/private_buildLegend.R | 348 - forestplot-3.2.0/forestplot/R/private_createEstimateArray.R | 207 forestplot-3.2.0/forestplot/R/private_drawLines.R | 184 forestplot-3.2.0/forestplot/R/private_getColWidths.R | 160 forestplot-3.2.0/forestplot/R/private_plot.forestplot_legend.R | 220 forestplot-3.2.0/forestplot/R/private_plot.forestplot_xaxis.R | 284 - forestplot-3.2.0/forestplot/R/private_prGetLabelsList.R | 364 - forestplot-3.2.0/forestplot/R/private_prepAlign.R | 68 forestplot-3.2.0/forestplot/R/private_prepBoxSize.R | 89 forestplot-3.2.0/forestplot/R/private_prepGraphPositions.R | 68 forestplot-3.2.0/forestplot/R/private_prepLabelText.R | 277 - forestplot-3.2.0/forestplot/R/private_prepLines.R | 598 +- forestplot-3.2.0/forestplot/R/safeLoadPackage.R | 22 forestplot-3.2.0/forestplot/R/text_styling.R | 588 ++ forestplot-3.2.0/forestplot/README.md | 28 forestplot-3.2.0/forestplot/build/vignette.rds |binary forestplot-3.2.0/forestplot/data/inventors_vs_mello.rda |only forestplot-3.2.0/forestplot/inst/doc/forestplot.R | 920 ++-- forestplot-3.2.0/forestplot/inst/doc/forestplot.Rmd | 1270 +++-- forestplot-3.2.0/forestplot/inst/doc/forestplot.html | 2023 ++++---- forestplot-3.2.0/forestplot/inst/examples/forestplot_alt_ci_example.R | 228 - forestplot-3.2.0/forestplot/inst/examples/forestplot_example.R | 335 - forestplot-3.2.0/forestplot/inst/examples/fpColors_example.R | 52 forestplot-3.2.0/forestplot/inst/examples/fpLegend_example.R | 70 forestplot-3.2.0/forestplot/inst/examples/fpShapesGp_example.R | 56 forestplot-3.2.0/forestplot/inst/examples/fp_add_lines_example.R | 78 forestplot-3.2.0/forestplot/inst/examples/fp_decorate_graph_example.R | 52 forestplot-3.2.0/forestplot/inst/examples/fp_insert_row_example.R | 46 forestplot-3.2.0/forestplot/inst/examples/fp_set_favors_example.R |only forestplot-3.2.0/forestplot/inst/examples/fp_set_style_example.R | 42 forestplot-3.2.0/forestplot/inst/examples/fp_set_zebra_example.R | 42 forestplot-3.2.0/forestplot/inst/examples/getTicks_example.R | 66 forestplot-3.2.0/forestplot/man/HRQoL.Rd | 61 forestplot-3.2.0/forestplot/man/assertAndRetrieveTidyValue.Rd | 58 forestplot-3.2.0/forestplot/man/dfHRQoL.Rd | 65 forestplot-3.2.0/forestplot/man/drawHorizontalLines.Rd | 42 forestplot-3.2.0/forestplot/man/forestplot-package.Rd | 104 forestplot-3.2.0/forestplot/man/forestplot.Rd | 938 ++-- forestplot-3.2.0/forestplot/man/fpColors.Rd | 211 forestplot-3.2.0/forestplot/man/fpDrawCI.Rd | 607 +- forestplot-3.2.0/forestplot/man/fpLegend.Rd | 125 forestplot-3.2.0/forestplot/man/fpShapesGp.Rd | 301 - forestplot-3.2.0/forestplot/man/fpTxtGp.Rd | 100 forestplot-3.2.0/forestplot/man/fp_add_lines.Rd | 192 forestplot-3.2.0/forestplot/man/fp_align_where.Rd |only forestplot-3.2.0/forestplot/man/fp_decorate_graph.Rd | 206 forestplot-3.2.0/forestplot/man/fp_extract_labels.Rd |only forestplot-3.2.0/forestplot/man/fp_extract_labeltext.Rd |only forestplot-3.2.0/forestplot/man/fp_set_favors.Rd |only forestplot-3.2.0/forestplot/man/fp_set_summary.Rd |only forestplot-3.2.0/forestplot/man/fp_set_zebra_style.Rd | 132 forestplot-3.2.0/forestplot/man/fp_span_where.Rd |only forestplot-3.2.0/forestplot/man/fp_txt_where.Rd |only forestplot-3.2.0/forestplot/man/getTicks.Rd | 136 forestplot-3.2.0/forestplot/man/heightDetails.xaxis.Rd | 50 forestplot-3.2.0/forestplot/man/inventors_vs_mello.Rd |only forestplot-3.2.0/forestplot/man/prDefaultGp.Rd | 44 forestplot-3.2.0/forestplot/man/prFpConvertMultidimArray.Rd | 36 forestplot-3.2.0/forestplot/man/prFpDrawLine.Rd | 132 forestplot-3.2.0/forestplot/man/prFpFetchRowLabel.Rd | 73 forestplot-3.2.0/forestplot/man/prFpFindWidestGrob.Rd | 42 forestplot-3.2.0/forestplot/man/prFpGetConfintFnList.Rd | 74 forestplot-3.2.0/forestplot/man/prFpGetLayoutVP.Rd | 60 forestplot-3.2.0/forestplot/man/prFpGetLegendBoxPosition.Rd | 56 forestplot-3.2.0/forestplot/man/prFpPrepareLegendMarker.Rd | 48 forestplot-3.2.0/forestplot/man/prFpPrintLabels.Rd | 54 forestplot-3.2.0/forestplot/man/prFpValidateLabelList.Rd | 38 forestplot-3.2.0/forestplot/man/prFpXrange.Rd | 88 forestplot-3.2.0/forestplot/man/prGetLabelsList.Rd | 64 forestplot-3.2.0/forestplot/man/prGetShapeGp.Rd | 88 forestplot-3.2.0/forestplot/man/prGetTextGrobCex.Rd | 36 forestplot-3.2.0/forestplot/man/prGparMerge.Rd | 40 forestplot-3.2.0/forestplot/man/prGridPlotTitle.Rd | 42 forestplot-3.2.0/forestplot/man/prListRep.Rd | 44 forestplot-3.2.0/forestplot/man/prMergeGp.Rd | 40 forestplot-3.2.0/forestplot/man/prPopulateList.Rd | 72 forestplot-3.2.0/forestplot/man/prPushMarginViewport.Rd | 56 forestplot-3.2.0/forestplot/man/prepAlign.Rd | 42 forestplot-3.2.0/forestplot/man/prepGraphPositions.Rd | 42 forestplot-3.2.0/forestplot/man/prepGridMargins.Rd | 46 forestplot-3.2.0/forestplot/man/prepLabelText.Rd | 90 forestplot-3.2.0/forestplot/man/prepLines.Rd | 56 forestplot-3.2.0/forestplot/man/row_manipulation.Rd | 190 forestplot-3.2.0/forestplot/man/safeLoadPackage.Rd | 28 forestplot-3.2.0/forestplot/man/style_manipulation.Rd | 238 - forestplot-3.2.0/forestplot/man/text_styling.Rd | 96 forestplot-3.2.0/forestplot/tests/data_generator.R |only forestplot-3.2.0/forestplot/tests/forestplot2_vtests.R | 834 +-- forestplot-3.2.0/forestplot/tests/test_visual_w_cochrane_mdata.R | 252 - forestplot-3.2.0/forestplot/tests/test_visual_with_Greg.R | 68 forestplot-3.2.0/forestplot/tests/testthat.R | 6 forestplot-3.2.0/forestplot/tests/testthat/Rplots.pdf |binary forestplot-3.2.0/forestplot/tests/testthat/test-extract-labeltext.R |only forestplot-3.2.0/forestplot/tests/testthat/test-forestplot.group_df.R | 158 forestplot-3.2.0/forestplot/tests/testthat/test-forestplot_1_compatibility.R | 38 forestplot-3.2.0/forestplot/tests/testthat/test-fpShapesGp.R | 78 forestplot-3.2.0/forestplot/tests/testthat/test-fpTxtGp.R | 116 forestplot-3.2.0/forestplot/tests/testthat/test-fp_add_favors.R |only forestplot-3.2.0/forestplot/tests/testthat/test-getLines.R | 352 - forestplot-3.2.0/forestplot/tests/testthat/test-getTicks.R | 46 forestplot-3.2.0/forestplot/tests/testthat/test-graph-pos.R | 82 forestplot-3.2.0/forestplot/tests/testthat/test-inputs.R | 135 forestplot-3.2.0/forestplot/tests/testthat/test-insert_row.R | 318 + forestplot-3.2.0/forestplot/tests/testthat/test-prFpConvertMultidimArray.R | 114 forestplot-3.2.0/forestplot/tests/testthat/test-prGparMerge.R | 58 forestplot-3.2.0/forestplot/tests/testthat/test-selector-styling.R |only forestplot-3.2.0/forestplot/tests/testthat/test-span.R |only forestplot-3.2.0/forestplot/tests/vtest_from_vignette.R | 596 +- forestplot-3.2.0/forestplot/vignettes/forestplot.Rmd | 1270 +++-- forestplot-3.2.0/forestplot/vignettes/forestplot_files |only 137 files changed, 15254 insertions(+), 13064 deletions(-)
Title: Example Data Sets for Use with Discrete Statistical Tests
Description: Provides several data sets for use with discrete statistical tests
and discrete multiple testing procedures.
Author: Christina Kihn [aut],
Sebastian Doehler [aut] ,
Florian Junge [aut, cre] ,
Lukas Klein [ctb] ,
Iqraa Meah [ctb]
Maintainer: Florian Junge <diso.fbmn@h-da.de>
Diff between DiscreteDatasets versions 0.1.2 dated 2025-01-24 and 0.2.0 dated 2026-03-04
DiscreteDatasets-0.1.2/DiscreteDatasets/data/airway_treat.rda |only DiscreteDatasets-0.2.0/DiscreteDatasets/DESCRIPTION | 38 DiscreteDatasets-0.2.0/DiscreteDatasets/MD5 | 50 - DiscreteDatasets-0.2.0/DiscreteDatasets/NEWS.md | 39 DiscreteDatasets-0.2.0/DiscreteDatasets/R/DiscreteDatasets.R | 20 DiscreteDatasets-0.2.0/DiscreteDatasets/R/airway.R | 174 +-- DiscreteDatasets-0.2.0/DiscreteDatasets/R/amnesia.R | 157 +-- DiscreteDatasets-0.2.0/DiscreteDatasets/R/disorderdetection.R | 86 - DiscreteDatasets-0.2.0/DiscreteDatasets/R/federalist.R | 136 +- DiscreteDatasets-0.2.0/DiscreteDatasets/R/hiv.R | 140 +- DiscreteDatasets-0.2.0/DiscreteDatasets/R/impc.R |only DiscreteDatasets-0.2.0/DiscreteDatasets/R/listerdata.R | 146 +- DiscreteDatasets-0.2.0/DiscreteDatasets/R/reconstruct.R | 488 ++++------ DiscreteDatasets-0.2.0/DiscreteDatasets/build/partial.rdb |binary DiscreteDatasets-0.2.0/DiscreteDatasets/data/airway.rda |binary DiscreteDatasets-0.2.0/DiscreteDatasets/data/airway_four_columns.rda |binary DiscreteDatasets-0.2.0/DiscreteDatasets/data/disorderdetection.rda |binary DiscreteDatasets-0.2.0/DiscreteDatasets/data/impc2015_excerpt.rda |only DiscreteDatasets-0.2.0/DiscreteDatasets/man/DiscreteDatasets-package.Rd | 71 - DiscreteDatasets-0.2.0/DiscreteDatasets/man/airway.Rd | 83 - DiscreteDatasets-0.2.0/DiscreteDatasets/man/amnesia.Rd | 152 +-- DiscreteDatasets-0.2.0/DiscreteDatasets/man/disorderdetection.Rd | 28 DiscreteDatasets-0.2.0/DiscreteDatasets/man/federalist.Rd | 137 +- DiscreteDatasets-0.2.0/DiscreteDatasets/man/hiv.Rd | 50 - DiscreteDatasets-0.2.0/DiscreteDatasets/man/impc2015_excerpt.Rd |only DiscreteDatasets-0.2.0/DiscreteDatasets/man/listerdata.Rd | 62 - DiscreteDatasets-0.2.0/DiscreteDatasets/man/reconstruct_four.Rd | 25 DiscreteDatasets-0.2.0/DiscreteDatasets/man/reconstruct_two.Rd | 58 - 28 files changed, 1103 insertions(+), 1037 deletions(-)
More information about DiscreteDatasets at CRAN
Permanent link
Title: A Basic Set of Functions for Compositional Data Analysis
Description: A minimum set of functions to perform compositional data analysis
using the log-ratio approach introduced by John Aitchison (1982). Main functions
have been implemented in c++ for better performance.
Author: Marc Comas-Cufi [aut, cre]
Maintainer: Marc Comas-Cufi <mcomas@imae.udg.edu>
Diff between coda.base versions 1.0.3 dated 2025-07-02 and 1.0.5 dated 2026-03-04
coda.base-1.0.3/coda.base/R/dendrogram_adapted.R |only coda.base-1.0.5/coda.base/DESCRIPTION | 8 coda.base-1.0.5/coda.base/MD5 | 126 - coda.base-1.0.5/coda.base/NAMESPACE | 4 coda.base-1.0.5/coda.base/NEWS | 5 coda.base-1.0.5/coda.base/R/RcppExports.R | 44 coda.base-1.0.5/coda.base/R/basis.R | 1002 +++++----- coda.base-1.0.5/coda.base/R/coordinates.R | 411 ++-- coda.base-1.0.5/coda.base/R/data.R | 505 ++--- coda.base-1.0.5/coda.base/R/dendrogram.R | 258 ++ coda.base-1.0.5/coda.base/R/imputation-functions.R | 68 coda.base-1.0.5/coda.base/R/pb_basis_constrained.R | 101 - coda.base-1.0.5/coda.base/R/utils.R | 511 +++-- coda.base-1.0.5/coda.base/R/zero_replacement_imputation.R | 580 +++-- coda.base-1.0.5/coda.base/inst/doc/coordinates.Rmd | 2 coda.base-1.0.5/coda.base/inst/doc/coordinates.html | 15 coda.base-1.0.5/coda.base/inst/doc/features.html | 9 coda.base-1.0.5/coda.base/inst/doc/principal_balances.html | 15 coda.base-1.0.5/coda.base/man/alimentation.Rd | 33 coda.base-1.0.5/coda.base/man/alr_basis.Rd | 25 coda.base-1.0.5/coda.base/man/arctic_lake.Rd | 4 coda.base-1.0.5/coda.base/man/blood_mn.Rd | 31 coda.base-1.0.5/coda.base/man/bmi_activity.Rd | 31 coda.base-1.0.5/coda.base/man/cc_basis.Rd | 13 coda.base-1.0.5/coda.base/man/cdp_basis.Rd |only coda.base-1.0.5/coda.base/man/clr_basis.Rd | 26 coda.base-1.0.5/coda.base/man/coda_replacement.Rd | 52 coda.base-1.0.5/coda.base/man/composition.Rd | 17 coda.base-1.0.5/coda.base/man/conditional_obasis.Rd |only coda.base-1.0.5/coda.base/man/constrained_pb.Rd |only coda.base-1.0.5/coda.base/man/coordinates.Rd | 56 coda.base-1.0.5/coda.base/man/dist.Rd | 30 coda.base-1.0.5/coda.base/man/eurostat_employment.Rd | 60 coda.base-1.0.5/coda.base/man/foraminiferals.Rd | 16 coda.base-1.0.5/coda.base/man/gen_coda_with_zeros_and_missings.Rd |only coda.base-1.0.5/coda.base/man/house_expend.Rd | 16 coda.base-1.0.5/coda.base/man/household_budget.Rd | 17 coda.base-1.0.5/coda.base/man/ilr_basis.Rd | 52 coda.base-1.0.5/coda.base/man/kilauea_iki.Rd | 35 coda.base-1.0.5/coda.base/man/mammals_milk.Rd | 10 coda.base-1.0.5/coda.base/man/milk_cows.Rd | 19 coda.base-1.0.5/coda.base/man/montana.Rd | 26 coda.base-1.0.5/coda.base/man/pairwise_basis.Rd | 11 coda.base-1.0.5/coda.base/man/parliament2017.Rd | 25 coda.base-1.0.5/coda.base/man/pb_basis.Rd | 72 coda.base-1.0.5/coda.base/man/pb_subcomposition.Rd |only coda.base-1.0.5/coda.base/man/pc_basis.Rd | 10 coda.base-1.0.5/coda.base/man/petrafm.Rd | 12 coda.base-1.0.5/coda.base/man/plot_balance.Rd | 42 coda.base-1.0.5/coda.base/man/pollen.Rd | 6 coda.base-1.0.5/coda.base/man/pottery.Rd | 11 coda.base-1.0.5/coda.base/man/sbp_basis.Rd | 101 - coda.base-1.0.5/coda.base/man/serprot.Rd | 13 coda.base-1.0.5/coda.base/man/statistitian_time.Rd | 27 coda.base-1.0.5/coda.base/man/variation_array.Rd | 4 coda.base-1.0.5/coda.base/man/waste.Rd | 49 coda.base-1.0.5/coda.base/man/weibo_hotels.Rd | 16 coda.base-1.0.5/coda.base/man/zero_na_conditional_obasis.Rd |only coda.base-1.0.5/coda.base/src/RcppExports.cpp | 177 - coda.base-1.0.5/coda.base/src/balance.h | 253 +- coda.base-1.0.5/coda.base/src/balance_evaluate.h | 122 - coda.base-1.0.5/coda.base/src/balance_optimal.h | 134 - coda.base-1.0.5/coda.base/src/coda.cpp | 255 +- coda.base-1.0.5/coda.base/src/coda.h | 26 coda.base-1.0.5/coda.base/src/coda_replacement.cpp |only coda.base-1.0.5/coda.base/src/conditional_obasis.cpp | 239 +- coda.base-1.0.5/coda.base/src/principal_balances.cpp | 430 ---- coda.base-1.0.5/coda.base/vignettes/coordinates.Rmd | 2 68 files changed, 3524 insertions(+), 2746 deletions(-)