Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.common versions 0.8.1 dated 2025-02-08 and 0.8.2 dated 2025-03-04
DESCRIPTION | 6 MD5 | 155 +- NAMESPACE | 3 NEWS.md | 7 R/RcppExports.R | 12 R/cache.R | 6 R/client.R | 168 +- R/config.R | 64 - R/convert.R | 6 R/credential_providers.R | 213 +-- R/credential_sso.R | 36 R/credential_sts.R | 72 - R/custom_rds.R | 18 R/custom_s3.R | 162 -- R/dateutil.R | 5 R/error.R | 4 R/handlers.R | 10 R/handlers_ec2query.R | 9 R/handlers_jsonrpc.R | 8 R/handlers_query.R | 14 R/handlers_rest.R | 36 R/handlers_restxml.R | 3 R/handlers_stream.R | 30 R/head_bucket.R | 61 R/iniutil.R | 10 R/jsonutil.R | 12 R/logging.R | 28 R/mock_bindings.R | 4 R/net.R | 30 R/onLoad.R | 2 R/paginate.R | 83 - R/populate.R | 11 R/queryutil.R | 3 R/request.R | 22 R/retry.R | 5 R/service.R | 41 R/signer_v1.R | 40 R/signer_v4.R | 75 - R/tags.R | 7 R/url.R | 9 R/util.R | 18 R/xmlutil.R | 97 + src/RcppExports.cpp | 19 src/ini_utils.cpp | 18 src/resolve_endpoint.cpp | 30 src/set_partition_name.cpp |only tests/testthat/helper.R | 5 tests/testthat/test_aws_error.R | 10 tests/testthat/test_cache.R | 6 tests/testthat/test_client.R | 106 + tests/testthat/test_config.R | 328 ++--- tests/testthat/test_convert.R | 13 tests/testthat/test_credential_providers.R | 37 tests/testthat/test_credentials.R | 69 - tests/testthat/test_custom_s3.R | 138 +- tests/testthat/test_dateutil.R | 20 tests/testthat/test_endpoint_vendor.R | 72 - tests/testthat/test_escape.R | 24 tests/testthat/test_handlers_core.R | 5 tests/testthat/test_handlers_ec2query.R | 196 +-- tests/testthat/test_handlers_jsonrpc.R | 285 +--- tests/testthat/test_handlers_query.R | 388 +++--- tests/testthat/test_handlers_rest.R | 41 tests/testthat/test_handlers_restjson.R | 401 +++--- tests/testthat/test_handlers_restxml.R | 414 +++--- tests/testthat/test_handlers_sse.R | 45 tests/testthat/test_handlers_stream.R | 1776 ++++++++++++++++++++++++++--- tests/testthat/test_iniutil.R | 13 tests/testthat/test_logging.R | 44 tests/testthat/test_net.R | 36 tests/testthat/test_paginate.R | 279 ++-- tests/testthat/test_populateutil.R | 6 tests/testthat/test_request.R | 5 tests/testthat/test_retry.R | 51 tests/testthat/test_service.R | 41 tests/testthat/test_signer_query.R | 521 ++++---- tests/testthat/test_signer_v4.R | 92 - tests/testthat/test_util.R | 5 tests/testthat/test_xmlutil.R | 42 79 files changed, 4197 insertions(+), 2989 deletions(-)
Title: Statistical Functions for the Design of Studies with Composite
Endpoints
Description: It has been designed to calculate the required sample size in randomized clinical trials with composite endpoints. It also calculates the expected effect and the probability of observing the composite endpoint, among others. The methodology can be found in Bofill & Gómez (2019) <doi:10.1002/sim.8092> and Gómez & Lagakos (2013) <doi:10.1002/sim.5547>.
Author: Marta Bofill Roig [aut, cre],
Jordi Cortes Martinez [aut],
Guadalupe Gomez Melis [ctb]
Maintainer: Marta Bofill Roig <marta.bofill.roig@upc.edu>
Diff between CompAREdesign versions 2.3.1 dated 2024-02-15 and 2.4.0 dated 2025-03-04
DESCRIPTION | 27 +++++-- MD5 | 54 +++++++++------ R/ARE_tte.R | 57 ++++++---------- R/MarginalsSelection.R | 47 +++++++------ R/effectsize_tte.R | 111 ++++++++++++++++--------------- R/get_prob1.R | 6 - R/plot_tte.R | 126 +++++++++++++++++++++++------------ R/sample_size_tte.R | 64 +++++++++--------- R/simula_cbe.R | 24 +++--- R/simula_tte.R | 17 +++- R/surv_tte.R | 152 ++++++++++++++++++++++--------------------- build |only inst |only man/ARE_tte.Rd | 16 ++-- man/CompAREdesign-package.Rd | 25 ++++++- man/MarginalsSelection.Rd | 5 + man/effectsize_tte.Rd | 20 +++-- man/figures |only man/get_prob1.Rd | 12 +++ man/plot_tte.Rd | 26 +++++-- man/samplesize_tte.Rd | 26 +++++-- man/simula_tte.Rd | 11 ++- man/surv_tte.Rd | 27 +++++-- vignettes |only 24 files changed, 520 insertions(+), 333 deletions(-)
Title: Make PX-Files in R
Description: Create PX-files from scratch or read and modify existing ones.
Includes a function for every PX keyword, making metadata manipulation
simple and human-readable.
Author: Johan Ejstrud [cre, aut],
Lars Pedersen [aut],
Statistics Greenland [cph]
Maintainer: Johan Ejstrud <johan@ejstrud.com>
Diff between pxmake versions 0.15.1 dated 2025-02-17 and 0.16.0 dated 2025-03-04
DESCRIPTION | 12 +++--- MD5 | 26 ++++++------- NEWS.md | 15 +++++++ R/data_df.R | 28 ++++++++------ R/px.R | 21 +++++++--- R/px_file.R | 3 - README.md | 19 ++------- inst/doc/first-px-file.html | 42 ++++++++++----------- inst/doc/micro-files.html | 26 ++++++------- man/px.Rd | 21 +++++++--- tests/testthat/test-50-px.R | 2 + tests/testthat/test-52-px-ordering.R | 64 ++++++++++++++++++++++++++++++--- tests/testthat/test-55-modify-cells1.R | 2 - tests/testthat/test-91-micromake.R | 3 - 14 files changed, 180 insertions(+), 104 deletions(-)
Title: Extended Legends and Axes for 'ggplot2'
Description: A 'ggplot2' extension that focusses on expanding the
plotter's arsenal of guides. Guides in 'ggplot2' include axes and
legends. 'legendry' offers new axes and annotation options, as well as
new legends and colour displays.
Author: Teun van den Brand [aut, cre, cph]
Maintainer: Teun van den Brand <tahvdbrand@gmail.com>
Diff between legendry versions 0.2.0 dated 2024-12-14 and 0.2.1 dated 2025-03-04
DESCRIPTION | 6 MD5 | 100 - NEWS.md | 19 R/aaa.R | 2 R/compose-.R | 2 R/compose-crux.R | 486 +++--- R/compose-sandwich.R | 228 +- R/compose-stack.R | 15 R/gizmo-density.R | 6 R/gizmo-histogram.R | 45 R/guide-circles.R | 790 +++++----- R/guide-colring.R | 5 R/guide-legend-base.R | 4 R/guide-legend-cross.R | 4 R/guide-legend-group.R | 4 R/key-.R | 744 ++++----- R/key-group.R | 4 R/key-range.R | 6 R/key-segment.R | 44 R/primitive-bracket.R | 614 +++---- R/primitive-labels.R | 5 R/primitive-line.R | 389 ++-- R/primitive-segments.R | 28 R/themes.R | 3 R/utils-checks.R | 33 R/utils-ggplot2.R | 531 +++--- R/utils.R | 10 man/figures/README-composition-1.svg | 1 man/figures/README-full_guides-1.svg | 1 man/gizmo_density.Rd | 5 man/gizmo_histogram.Rd | 15 man/key_group.Rd | 4 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/compose-sandwich/horizontal-sandwich-flipped.svg | 1 tests/testthat/_snaps/compose-sandwich/horizontal-sandwich.svg | 1 tests/testthat/_snaps/compose-sandwich/vertical-sandwich-flipped.svg | 1 tests/testthat/_snaps/compose-sandwich/vertical-sandwich.svg | 1 tests/testthat/_snaps/compose-stack/compose-stack-cartesian.svg | 16 tests/testthat/_snaps/guide-circles.md |only tests/testthat/_snaps/guide-colbar/bottom-position.svg | 4 tests/testthat/_snaps/guide-colbar/left-position.svg | 4 tests/testthat/_snaps/guide-colbar/right-position.svg | 4 tests/testthat/_snaps/guide-colbar/top-position.svg | 4 tests/testthat/_snaps/guide-colsteps/bottom-position.svg | 4 tests/testthat/_snaps/guide-colsteps/left-position.svg | 4 tests/testthat/_snaps/guide-colsteps/right-position.svg | 4 tests/testthat/_snaps/guide-colsteps/top-position.svg | 4 tests/testthat/test-aaa.R | 3 tests/testthat/test-guide-circles.R | 142 - tests/testthat/test-key-range.R | 14 tests/testthat/test-key-segment.R | 14 tests/testthat/test-themes.R |only 52 files changed, 2293 insertions(+), 2085 deletions(-)
Title: Scientific Analysis of Trial Errors (SATE)
Description: Bundles functions used to analyze the harmfulness of trial errors in criminal trials.
Functions in the Scientific Analysis of Trial Errors ('SATE') package help users estimate the
probability that a jury will find a defendant guilty given jurors' preferences for a guilty
verdict and the uncertainty of that estimate. Users can also compare actual and hypothetical
trial conditions to conduct harmful error analysis. The relationship between individual jurors'
verdict preferences and the probability that a jury returns a guilty verdict has been studied
by Davis (1973) <doi:10.1037/h0033951>; MacCoun & Kerr (1988) <doi:10.1037/0022-3514.54.1.21>,
and Devine et el. (2001) <doi:10.1037/1076-8971.7.3.622>, among others.
Author: Barry Edwards [aut, cre]
Maintainer: Barry Edwards <bce@uga.edu>
Diff between sate versions 2.3.0 dated 2025-02-06 and 2.4.0 dated 2025-03-04
DESCRIPTION | 6 +++--- MD5 | 8 +++++--- NEWS.md | 14 ++++++++++++-- R/data.R | 26 ++++++++++++++++++++++++++ data/observed.deliberations.rda |only man/observed.deliberations.Rd |only 6 files changed, 46 insertions(+), 8 deletions(-)
Title: Sparse-Group SLOPE: Adaptive Bi-Level Selection with FDR Control
Description: Implementation of Sparse-group SLOPE (SGS) (Feser and Evangelou (2023) <doi:10.48550/arXiv.2305.09467>) models. Linear and logistic regression models are supported, both of which can be fit using k-fold cross-validation. Dense and sparse input matrices are supported. In addition, a general Adaptive Three Operator Splitting (ATOS) (Pedregosa and Gidel (2018) <doi:10.48550/arXiv.1804.02339>) implementation is provided. Group SLOPE (gSLOPE) (Brzyski et al. (2019) <doi:10.1080/01621459.2017.1411269>) and group-based OSCAR models (Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.15357>) are also implemented. All models are available with strong screening rules (Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.15357>) for computational speed-up.
Author: Fabio Feser [aut, cre]
Maintainer: Fabio Feser <ff120@ic.ac.uk>
Diff between sgs versions 0.3.4 dated 2025-02-06 and 0.3.5 dated 2025-03-04
DESCRIPTION | 8 ++-- MD5 | 28 +++++++------- R/fit_goscar.R | 26 +++++++++++-- R/fit_gslope.R | 24 +++++++++++- R/fit_sgo.R | 24 +++++++++++- R/fit_sgs.R | 23 +++++++++++- R/fitting_code.R | 22 +---------- R/global_wrapper_code.R | 41 ++++++++++++++------- R/screen.R | 2 - R/utils.R | 70 +++++++++++++++++++++++++++++-------- inst/doc/reproducible_example.html | 12 +++--- man/fit_goscar.Rd | 2 - man/fit_gslope.Rd | 2 - man/fit_sgo.Rd | 2 - man/fit_sgs.Rd | 2 - 15 files changed, 201 insertions(+), 87 deletions(-)
Title: A Spotlight 'React' Widget for 'shiny' Apps
Description: Creates a contextual menu that can be triggered with keyboard shortcuts or programmatically.
This can replace traditional sidebars or navigation bars, thereby enhancing the
user experience with lighter user interfaces.
Author: David Granjon [aut, cre],
Adenekan Wonderful [cph]
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between scoutbaR versions 0.0.1 dated 2024-11-21 and 0.1.0 dated 2025-03-04
scoutbaR-0.0.1/scoutbaR/tests/testthat/_snaps/scoutbar/simple-002_.new.png |only scoutbaR-0.1.0/scoutbaR/DESCRIPTION | 6 scoutbaR-0.1.0/scoutbaR/MD5 | 22 scoutbaR-0.1.0/scoutbaR/NEWS.md | 7 scoutbaR-0.1.0/scoutbaR/R/scoutbar.R | 2 scoutbaR-0.1.0/scoutbaR/inst/examples/simple/app.R | 2 scoutbaR-0.1.0/scoutbaR/inst/www/scoutbar/scoutbar.js | 2659 ---------- scoutbaR-0.1.0/scoutbaR/inst/www/scoutbar/scoutbar.js.LICENSE.txt |only scoutbaR-0.1.0/scoutbaR/inst/www/scoutbar/scoutbar.js.map | 2 scoutbaR-0.1.0/scoutbaR/tests/testthat/_snaps/scoutbar/simple-001.json | 3 scoutbaR-0.1.0/scoutbaR/tests/testthat/_snaps/scoutbar/simple-002.json | 1 scoutbaR-0.1.0/scoutbaR/tests/testthat/_snaps/scoutbar/simple-002_.png |binary scoutbaR-0.1.0/scoutbaR/tests/testthat/_snaps/scoutbar/simple-003.json | 1 13 files changed, 30 insertions(+), 2675 deletions(-)
Title: Ternary Plots
Description: Ternary plots made simple. This package allows to create
ternary plots using 'graphics'. It provides functions to display the
data in the ternary space, to add or tune graphical elements and to
display statistical summaries. It also includes common ternary
diagrams which are useful for the archaeologist (e.g. soil texture
charts, ceramic phase diagram).
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between isopleuros versions 1.3.0 dated 2024-11-22 and 1.4.0 dated 2025-03-04
DESCRIPTION | 30 ++- MD5 | 40 ++-- NAMESPACE | 3 NEWS.md | 7 R/AllGenerics.R | 49 +++++- R/coordinates.R | 2 R/isopleuros-internal.R | 38 ++++ R/isopleuros-package.R | 2 R/ternary_contour.R | 5 R/ternary_image.R | 245 ++++++++++++++++++++---------- R/ternary_window.R | 2 README.md | 38 +++- build/partial.rdb |binary inst/CITATION | 2 inst/examples/ex-tile.R |only inst/po |only inst/tinytest/_tinysnapshot/image_bin.svg |only inst/tinytest/test_tiles.R | 13 + man/isopleuros-package.Rd | 6 man/ternary_contour.Rd | 2 man/ternary_image.Rd | 3 man/ternary_tile.Rd |only po |only 23 files changed, 354 insertions(+), 133 deletions(-)
Title: Cryptographic Hash, Extendable-Output and Base64 Functions
Description: Fast and memory-efficient streaming hash functions and base64
encoding / decoding. Hashes strings and raw vectors directly. Stream hashes
files which can be larger than memory, as well as in-memory objects through
R's serialization mechanism. Implementations include the SHA-256, SHA-3 and
'Keccak' cryptographic hash functions, SHAKE256 extendable-output function
(XOF), and 'SipHash' pseudo-random function.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between secretbase versions 1.0.4 dated 2025-01-16 and 1.0.5 dated 2025-03-04
DESCRIPTION | 8 +++---- LICENSE |only MD5 | 25 +++++++++++----------- NEWS.md | 4 +++ R/base.R | 16 -------------- R/secret.R | 16 -------------- README.md | 28 ++++++++---------------- build/partial.rdb |binary src/base.c | 35 +++++++++--------------------- src/init.c | 16 -------------- src/secret.c | 16 -------------- src/secret.h | 18 --------------- src/secret2.c | 16 -------------- src/secret3.c | 61 ++++++++++++++++++++++-------------------------------- 14 files changed, 67 insertions(+), 192 deletions(-)
Title: Search and Retrieve Spatial Data from 'GUGiK'
Description: Automatic open data acquisition from resources of Polish Head Office
of Geodesy and Cartography ('Główny Urząd Geodezji i Kartografii')
(<https://www.gov.pl/web/gugik>).
Available datasets include various types of numeric, raster and vector data,
such as orthophotomaps, digital elevation models (digital terrain models,
digital surface model, point clouds), state register of borders, spatial
databases, geometries of cadastral parcels, 3D models of buildings, and more.
It is also possible to geocode addresses or objects using the geocodePL_get()
function.
Author: Krzysztof Dyba [aut, cre] ,
Jakub Nowosad [aut] ,
Maciej Beresewicz [ctb] ,
Grzegorz Sapijaszko [ctb],
GUGiK [ctb]
Maintainer: Krzysztof Dyba <adres7@gmail.com>
Diff between rgugik versions 0.4.1 dated 2024-05-11 and 0.4.2 dated 2025-03-04
DESCRIPTION | 15 ++++++--- MD5 | 57 ++++++++++++++++++++---------------- NAMESPACE | 1 NEWS.md | 13 ++++++++ R/DEM_request.R | 10 ++++-- R/borders_download.R | 6 +-- R/commune_names.R | 2 - R/egib_download.R |only R/egib_layers.R |only R/geodb_download.R | 2 - R/geonames_download.R | 2 - R/minmaxDTM_get.R | 3 + R/topodb_download.R | 2 - README.md | 33 +++++++++++--------- build/vignette.rds |binary data/commune_names.rda |binary data/egib_layers.rda |only inst/doc/DEM.html | 4 +- inst/doc/orthophotomap.html | 2 - inst/doc/topodb.html | 2 - man/borders_download.Rd | 2 - man/commune_names.Rd | 4 +- man/egib_download.Rd |only man/egib_layers.Rd |only man/figures/README-f1-1.png |binary man/figures/README-f2-1.png |binary man/geonames_download.Rd | 2 - man/rgugik-package.Rd | 1 tests/test-tile_download.R |only tests/testthat/test-DEM_request.R | 2 - tests/testthat/test-egib_download.R |only tests/testthat/test-geocodePL_get.R | 6 +-- tests/testthat/test-tile_download.R | 8 +---- 33 files changed, 106 insertions(+), 73 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), this package implements
features like bootstrapping or simulating of parameters and models,
feature reduction (feature extraction and variable selection) as well
as functions to describe data and variable characteristics (e.g.
skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Soeren Hoejsgaard [aut],
Brenton M. Wiernik [aut] ,
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] ,
Jeffrey Girard [ctb] ,
Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between parameters versions 0.24.1 dated 2025-01-14 and 0.24.2 dated 2025-03-04
DESCRIPTION | 30 +++--- MD5 | 116 +++++++++++++-------------- NAMESPACE | 2 NEWS.md | 15 +++ R/1_model_parameters.R | 15 --- R/dof_kenward.R | 8 - R/extract_random_variances.R | 2 R/format.R | 5 + R/group_level_total.R |only R/methods_aod.R | 7 - R/methods_aov.R | 12 ++ R/methods_averaging.R | 7 - R/methods_betareg.R | 7 - R/methods_bfsl.R | 7 - R/methods_brglm2.R | 14 --- R/methods_brms.R | 20 ++-- R/methods_cplm.R | 7 - R/methods_fixest.R | 14 --- R/methods_glmmTMB.R | 24 +++-- R/methods_hglm.R | 7 - R/methods_lme4.R | 20 ++-- R/methods_marginaleffects.R | 37 +++++++- R/methods_mclogit.R | 7 - R/methods_mmrm.R | 7 - R/methods_mvord.R | 7 - R/methods_nestedLogit.R | 7 - R/methods_ordinal.R | 7 - R/methods_panelr.R | 1 R/methods_rstanarm.R | 8 + R/methods_selection.R | 7 - R/methods_survey.R | 7 - R/methods_svy2lme.R | 4 R/methods_systemfit.R | 7 - R/print.parameters_model.R | 7 + R/print_html.R | 1 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 1 man/compare_parameters.Rd | 12 +- man/display.parameters_model.Rd | 5 - man/equivalence_test.lm.Rd | 7 - man/model_parameters.BFBayesFactor.Rd | 10 +- man/model_parameters.befa.Rd | 10 +- man/model_parameters.brmsfit.Rd | 24 ++--- man/model_parameters.default.Rd | 3 man/model_parameters.glimML.Rd | 3 man/model_parameters.glmmTMB.Rd | 10 -- man/model_parameters.zcpglm.Rd | 3 man/p_function.Rd | 7 - man/pool_parameters.Rd | 7 - man/print.compare_parameters.Rd | 5 - man/print.parameters_model.Rd | 5 - man/simulate_parameters.Rd | 10 +- tests/testthat/_snaps/marginaleffects.md | 2 tests/testthat/_snaps/weightit.md | 2 tests/testthat/test-group_level_total.R |only tests/testthat/test-marginaleffects.R | 19 ++++ tests/testthat/test-model_parameters.aov.R | 48 +++++++++++ tests/testthat/test-model_parameters.mixed.R | 8 + 60 files changed, 324 insertions(+), 332 deletions(-)
Title: Generalized Pairwise Comparisons
Description: Implementation of the Generalized Pairwise Comparisons (GPC) as defined in Buyse (2010) <doi:10.1002/sim.3923> for complete observations, and extended in Peron (2018) <doi:10.1177/0962280216658320> to deal with right-censoring. GPC compare two groups of observations (intervention vs. control group) regarding several prioritized endpoints to estimate the probability that a random observation drawn from one group performs better/worse/equivalently than a random observation drawn from the other group. Summary statistics such as the net treatment benefit, win ratio, or win odds are then deduced from these probabilities. Confidence intervals and p-values are obtained based on asymptotic results (Ozenne 2021 <doi:10.1177/09622802211037067>), non-parametric bootstrap, or permutations. The software enables the use of thresholds of minimal importance difference, stratification, non-prioritized endpoints (O Brien test), and can handle right-censoring and competing-risks.
Author: Brice Ozenne [aut, cre] ,
Eva Cantagallo [aut],
William Anderson [aut],
Julien Peron [ctb],
Johan Verbeeck [ctb]
Maintainer: Brice Ozenne <brice.mh.ozenne@gmail.com>
Diff between BuyseTest versions 3.0.5 dated 2024-10-13 and 3.1.0 dated 2025-03-04
BuyseTest-3.0.5/BuyseTest/man/S4BuyseTest-getCount.Rd |only BuyseTest-3.0.5/BuyseTest/man/S4BuyseTest-getIid.Rd |only BuyseTest-3.0.5/BuyseTest/man/S4BuyseTest-getPairScore.Rd |only BuyseTest-3.0.5/BuyseTest/man/S4BuyseTest-getPseudovalue.Rd |only BuyseTest-3.0.5/BuyseTest/man/S4BuyseTest-getSurvival.Rd |only BuyseTest-3.0.5/BuyseTest/man/S4BuyseTest-sensitivity.Rd |only BuyseTest-3.1.0/BuyseTest/DESCRIPTION | 16 BuyseTest-3.1.0/BuyseTest/MD5 | 304 - BuyseTest-3.1.0/BuyseTest/NAMESPACE | 193 BuyseTest-3.1.0/BuyseTest/NEWS | 540 +- BuyseTest-3.1.0/BuyseTest/R/0-onLoad.R | 22 BuyseTest-3.1.0/BuyseTest/R/1-setGeneric.R | 118 BuyseTest-3.1.0/BuyseTest/R/BuyseMultComp.R | 996 ++-- BuyseTest-3.1.0/BuyseTest/R/BuyseTTEM.R | 1403 +++-- BuyseTest-3.1.0/BuyseTest/R/BuyseTest-Peron.R | 714 +- BuyseTest-3.1.0/BuyseTest/R/BuyseTest-check.R | 1139 ++-- BuyseTest-3.1.0/BuyseTest/R/BuyseTest-inference.R | 1028 ++-- BuyseTest-3.1.0/BuyseTest/R/BuyseTest-initialization.R | 1738 +++---- BuyseTest-3.1.0/BuyseTest/R/BuyseTest-package.R | 142 BuyseTest-3.1.0/BuyseTest/R/BuyseTest-print.R | 357 - BuyseTest-3.1.0/BuyseTest/R/BuyseTest.R | 1557 +++--- BuyseTest-3.1.0/BuyseTest/R/BuyseTest.options.R | 222 BuyseTest-3.1.0/BuyseTest/R/CasinoTest.R | 666 +- BuyseTest-3.1.0/BuyseTest/R/PairScore.R | 108 BuyseTest-3.1.0/BuyseTest/R/RcppExports.R | 462 - BuyseTest-3.1.0/BuyseTest/R/S4-BuysePower-model.tables.R | 338 - BuyseTest-3.1.0/BuyseTest/R/S4-BuysePower-nobs.R | 96 BuyseTest-3.1.0/BuyseTest/R/S4-BuysePower-print.R | 66 BuyseTest-3.1.0/BuyseTest/R/S4-BuysePower-show.R | 64 BuyseTest-3.1.0/BuyseTest/R/S4-BuysePower-summary.R | 350 - BuyseTest-3.1.0/BuyseTest/R/S4-BuysePower.R | 166 BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest-coef.R | 678 +- BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest-confint.R | 2166 ++++---- BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest-get.R | 1706 +++---- BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest-model.tables.R | 564 +- BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest-nobs.R | 204 BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest-plot.R | 178 BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest-print.R | 70 BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest-sensitivity.R | 730 +-- BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest-show.R | 98 BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest-summary.R | 947 +-- BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest.R | 612 +- BuyseTest-3.1.0/BuyseTest/R/S4-BuyseTest.options.R | 464 - BuyseTest-3.1.0/BuyseTest/R/as.data.table.performance.R | 282 - BuyseTest-3.1.0/BuyseTest/R/auc.R | 792 +-- BuyseTest-3.1.0/BuyseTest/R/autoplot.S4BuyseTest.R | 342 - BuyseTest-3.1.0/BuyseTest/R/brier.R | 604 +- BuyseTest-3.1.0/BuyseTest/R/constStrata.R | 178 BuyseTest-3.1.0/BuyseTest/R/discreteRoot.R | 580 +- BuyseTest-3.1.0/BuyseTest/R/doc-data.R |only BuyseTest-3.1.0/BuyseTest/R/efronlim.R |only BuyseTest-3.1.0/BuyseTest/R/iid.S3sensitivity.R | 50 BuyseTest-3.1.0/BuyseTest/R/iid.prodlim.R | 404 - BuyseTest-3.1.0/BuyseTest/R/normexp.R | 424 - BuyseTest-3.1.0/BuyseTest/R/performance.R | 2424 +++++----- BuyseTest-3.1.0/BuyseTest/R/performanceResample.R | 572 +- BuyseTest-3.1.0/BuyseTest/R/plot.S3sensitivity.R | 358 - BuyseTest-3.1.0/BuyseTest/R/powerBuyseTest.R | 1621 +++--- BuyseTest-3.1.0/BuyseTest/R/predict.logit.R | 564 +- BuyseTest-3.1.0/BuyseTest/R/rbind.performanceResample.R | 226 BuyseTest-3.1.0/BuyseTest/R/sim.simBuyseTest.R | 66 BuyseTest-3.1.0/BuyseTest/R/simBuyseTest.R | 1470 +++--- BuyseTest-3.1.0/BuyseTest/R/simCompetingRisks.R | 284 - BuyseTest-3.1.0/BuyseTest/R/summary.performance.R | 228 BuyseTest-3.1.0/BuyseTest/R/valid.R | 960 +-- BuyseTest-3.1.0/BuyseTest/build/vignette.rds |binary BuyseTest-3.1.0/BuyseTest/data |only BuyseTest-3.1.0/BuyseTest/inst/CITATION | 116 BuyseTest-3.1.0/BuyseTest/inst/doc/overview.pdf |binary BuyseTest-3.1.0/BuyseTest/inst/doc/overview.pdf.asis | 1118 ++-- BuyseTest-3.1.0/BuyseTest/inst/doc/wilcoxonTest.pdf.asis | 210 BuyseTest-3.1.0/BuyseTest/inst/source |only BuyseTest-3.1.0/BuyseTest/man/BuyseMultComp.Rd | 230 BuyseTest-3.1.0/BuyseTest/man/BuyseTTEM.Rd | 157 BuyseTest-3.1.0/BuyseTest/man/BuyseTest-package.Rd | 166 BuyseTest-3.1.0/BuyseTest/man/BuyseTest.Rd | 635 +- BuyseTest-3.1.0/BuyseTest/man/BuyseTest.options-class.Rd | 32 BuyseTest-3.1.0/BuyseTest/man/BuyseTest.options-methods.Rd | 44 BuyseTest-3.1.0/BuyseTest/man/BuyseTest.options.Rd | 66 BuyseTest-3.1.0/BuyseTest/man/CasinoTest.Rd | 224 BuyseTest-3.1.0/BuyseTest/man/GPC_cpp.Rd | 380 - BuyseTest-3.1.0/BuyseTest/man/S4BuysePower-class.Rd | 34 BuyseTest-3.1.0/BuyseTest/man/S4BuysePower-nobs.Rd | 50 BuyseTest-3.1.0/BuyseTest/man/S4BuysePower-summary.Rd | 118 BuyseTest-3.1.0/BuyseTest/man/S4BuyseTest-class.Rd | 34 BuyseTest-3.1.0/BuyseTest/man/S4BuyseTest-coef.Rd | 132 BuyseTest-3.1.0/BuyseTest/man/S4BuyseTest-confint.Rd | 254 - BuyseTest-3.1.0/BuyseTest/man/S4BuyseTest-nobs.Rd | 62 BuyseTest-3.1.0/BuyseTest/man/S4BuyseTest-plot.Rd | 136 BuyseTest-3.1.0/BuyseTest/man/S4BuyseTest-print.Rd | 52 BuyseTest-3.1.0/BuyseTest/man/S4BuyseTest-show.Rd | 72 BuyseTest-3.1.0/BuyseTest/man/S4BuyseTest-summary.Rd | 284 - BuyseTest-3.1.0/BuyseTest/man/as.data.table.performance.Rd | 66 BuyseTest-3.1.0/BuyseTest/man/auc.Rd | 166 BuyseTest-3.1.0/BuyseTest/man/autoplot-S4BuyseTest.Rd | 82 BuyseTest-3.1.0/BuyseTest/man/calcIntegralSurv2_cpp.Rd | 94 BuyseTest-3.1.0/BuyseTest/man/coef.BuyseTestAuc.Rd | 38 BuyseTest-3.1.0/BuyseTest/man/coef.BuyseTestBrier.Rd | 40 BuyseTest-3.1.0/BuyseTest/man/confint.BuyseTestAuc.Rd | 38 BuyseTest-3.1.0/BuyseTest/man/confint.BuyseTestBrier.Rd | 40 BuyseTest-3.1.0/BuyseTest/man/constStrata.Rd | 122 BuyseTest-3.1.0/BuyseTest/man/data-CHARM.Rd |only BuyseTest-3.1.0/BuyseTest/man/data-EB.Rd |only BuyseTest-3.1.0/BuyseTest/man/data-prodige.Rd |only BuyseTest-3.1.0/BuyseTest/man/dot-calcIntegralCif_cpp.Rd | 98 BuyseTest-3.1.0/BuyseTest/man/dot-calcIntegralSurv_cpp.Rd | 84 BuyseTest-3.1.0/BuyseTest/man/dot-colCenter_cpp.Rd | 40 BuyseTest-3.1.0/BuyseTest/man/dot-colCumSum_cpp.Rd | 36 BuyseTest-3.1.0/BuyseTest/man/dot-colMultiply_cpp.Rd | 40 BuyseTest-3.1.0/BuyseTest/man/dot-colScale_cpp.Rd | 40 BuyseTest-3.1.0/BuyseTest/man/dot-rowCenter_cpp.Rd | 40 BuyseTest-3.1.0/BuyseTest/man/dot-rowCumProd_cpp.Rd | 36 BuyseTest-3.1.0/BuyseTest/man/dot-rowCumSum_cpp.Rd | 36 BuyseTest-3.1.0/BuyseTest/man/dot-rowMultiply_cpp.Rd | 40 BuyseTest-3.1.0/BuyseTest/man/dot-rowScale_cpp.Rd | 40 BuyseTest-3.1.0/BuyseTest/man/efronlim.Rd |only BuyseTest-3.1.0/BuyseTest/man/getCount.Rd |only BuyseTest-3.1.0/BuyseTest/man/getIid.Rd |only BuyseTest-3.1.0/BuyseTest/man/getPairScore.Rd |only BuyseTest-3.1.0/BuyseTest/man/getPseudovalue.Rd |only BuyseTest-3.1.0/BuyseTest/man/getSurvival.Rd |only BuyseTest-3.1.0/BuyseTest/man/iid.BuyseTestAuc.Rd | 38 BuyseTest-3.1.0/BuyseTest/man/iid.BuyseTestBrier.Rd | 40 BuyseTest-3.1.0/BuyseTest/man/iid.prodlim.Rd | 110 BuyseTest-3.1.0/BuyseTest/man/performance.Rd | 212 BuyseTest-3.1.0/BuyseTest/man/performanceResample.Rd | 114 BuyseTest-3.1.0/BuyseTest/man/powerBuyseTest.Rd | 314 - BuyseTest-3.1.0/BuyseTest/man/predict.BuyseTTEM.Rd | 62 BuyseTest-3.1.0/BuyseTest/man/rbind.performance.Rd | 122 BuyseTest-3.1.0/BuyseTest/man/sensitivity.Rd |only BuyseTest-3.1.0/BuyseTest/man/simBuyseTest.Rd | 422 - BuyseTest-3.1.0/BuyseTest/man/simCompetingRisks.Rd | 212 BuyseTest-3.1.0/BuyseTest/man/summary.performance.Rd | 46 BuyseTest-3.1.0/BuyseTest/man/validFCTs.Rd | 312 - BuyseTest-3.1.0/BuyseTest/tests/testthat.R | 84 BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuysePower.R | 400 - BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTTEM.R | 568 +- BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-CR.R | 468 - BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-PairScore.R | 240 BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-Pairs.R | 1204 ++-- BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-checkValues.R | 1148 ++-- BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-correctionTTE.R | 450 - BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-engine.R | 214 BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-iid.R | 1601 +++--- BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-multcomp.R | 178 BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-neutralAsUnif.R | 206 BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-operator.R | 202 BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-previousBug.R | 1556 +++--- BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-resampling.R | 1198 ++-- BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-restricted.R | 188 BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-strata.R | 864 +-- BuyseTest-3.1.0/BuyseTest/tests/testthat/test-BuyseTest-weightObs.R | 130 BuyseTest-3.1.0/BuyseTest/tests/testthat/test-auc.R | 268 - BuyseTest-3.1.0/BuyseTest/tests/testthat/test-initSurvival.R | 438 - BuyseTest-3.1.0/BuyseTest/tests/testthat/test-initThreshold.R | 168 BuyseTest-3.1.0/BuyseTest/tests/testthat/test-otherPackages.R | 394 - BuyseTest-3.1.0/BuyseTest/tests/testthat/testthat-problems.rds |only BuyseTest-3.1.0/BuyseTest/vignettes/overview.pdf.asis | 1118 ++-- BuyseTest-3.1.0/BuyseTest/vignettes/vignette_CR.Rmd | 146 BuyseTest-3.1.0/BuyseTest/vignettes/wilcoxonTest.pdf.asis | 210 160 files changed, 27637 insertions(+), 27481 deletions(-)
Title: Maximum Likelihood Estimation for Univariate Densities
Description: User-friendly maximum likelihood estimation (Fisher (1921)
<doi:10.1098/rsta.1922.0009>) of univariate densities.
Author: Jonas Moss [aut, cre] ,
Thomas Nagler [ctb],
Chitu Okoli [ctb]
Maintainer: Jonas Moss <jonas.gjertsen@gmail.com>
Diff between univariateML versions 1.1.1 dated 2022-01-25 and 1.5.0 dated 2025-03-04
univariateML-1.1.1/univariateML/R/imports.R |only univariateML-1.1.1/univariateML/man/ml_input_checker.Rd |only univariateML-1.5.0/univariateML/DESCRIPTION | 16 univariateML-1.5.0/univariateML/LICENSE | 4 univariateML-1.5.0/univariateML/MD5 | 339 ++- univariateML-1.5.0/univariateML/NAMESPACE | 118 - univariateML-1.5.0/univariateML/R/aaa.R |only univariateML-1.5.0/univariateML/R/bootstrap.R | 189 +- univariateML-1.5.0/univariateML/R/data-abalone.R | 62 univariateML-1.5.0/univariateML/R/data-corbet.R |only univariateML-1.5.0/univariateML/R/data-egypt.R | 58 univariateML-1.5.0/univariateML/R/densities.R | 4 univariateML-1.5.0/univariateML/R/functions.R | 168 - univariateML-1.5.0/univariateML/R/generics.R | 372 ++-- univariateML-1.5.0/univariateML/R/helpers.R | 291 +-- univariateML-1.5.0/univariateML/R/mlbeta.R | 177 -- univariateML-1.5.0/univariateML/R/mlbetapr.R | 101 - univariateML-1.5.0/univariateML/R/mlbinom.R |only univariateML-1.5.0/univariateML/R/mlburr.R |only univariateML-1.5.0/univariateML/R/mlcauchy.R | 111 - univariateML-1.5.0/univariateML/R/mldunif.R |only univariateML-1.5.0/univariateML/R/mlexp.R | 84 univariateML-1.5.0/univariateML/R/mlfatigue.R |only univariateML-1.5.0/univariateML/R/mlgamma.R | 151 - univariateML-1.5.0/univariateML/R/mlged.R | 86 - univariateML-1.5.0/univariateML/R/mlgeom.R |only univariateML-1.5.0/univariateML/R/mlgompertz.R |only univariateML-1.5.0/univariateML/R/mlgumbel.R | 163 - univariateML-1.5.0/univariateML/R/mlinvburr.R |only univariateML-1.5.0/univariateML/R/mlinvgamma.R | 99 - univariateML-1.5.0/univariateML/R/mlinvgauss.R | 101 - univariateML-1.5.0/univariateML/R/mlinvweibull.R | 117 - univariateML-1.5.0/univariateML/R/mlkumar.R | 178 -- univariateML-1.5.0/univariateML/R/mllaplace.R | 91 - univariateML-1.5.0/univariateML/R/mllgamma.R | 105 - univariateML-1.5.0/univariateML/R/mllgser.R |only univariateML-1.5.0/univariateML/R/mlllogis.R | 109 - univariateML-1.5.0/univariateML/R/mllnorm.R | 96 - univariateML-1.5.0/univariateML/R/mllogis.R | 104 - univariateML-1.5.0/univariateML/R/mllogitnorm.R | 106 - univariateML-1.5.0/univariateML/R/mllomax.R | 196 -- univariateML-1.5.0/univariateML/R/mlnaka.R | 121 - univariateML-1.5.0/univariateML/R/mlnbinom.R |only univariateML-1.5.0/univariateML/R/mlnorm.R | 93 - univariateML-1.5.0/univariateML/R/mlparalogis.R |only univariateML-1.5.0/univariateML/R/mlpareto.R | 94 - univariateML-1.5.0/univariateML/R/mlpois.R |only univariateML-1.5.0/univariateML/R/mlpower.R | 131 - univariateML-1.5.0/univariateML/R/mlrayleigh.R | 85 univariateML-1.5.0/univariateML/R/mlsged.R | 86 - univariateML-1.5.0/univariateML/R/mlsnorm.R | 80 univariateML-1.5.0/univariateML/R/mlsstd.R | 81 univariateML-1.5.0/univariateML/R/mlstd.R | 80 univariateML-1.5.0/univariateML/R/mlunif.R | 84 univariateML-1.5.0/univariateML/R/mlweibull.R | 140 - univariateML-1.5.0/univariateML/R/mlzip.R |only univariateML-1.5.0/univariateML/R/mlzipf.R |only univariateML-1.5.0/univariateML/R/model_select.R | 205 +- univariateML-1.5.0/univariateML/R/probability_plots.R | 308 ++- univariateML-1.5.0/univariateML/R/univariateML-package.R | 44 univariateML-1.5.0/univariateML/R/utility.R | 173 +- univariateML-1.5.0/univariateML/R/zzz.R |only univariateML-1.5.0/univariateML/README.md | 290 +-- univariateML-1.5.0/univariateML/build/vignette.rds |binary univariateML-1.5.0/univariateML/data/corbet.rda |only univariateML-1.5.0/univariateML/inst/CITATION | 33 univariateML-1.5.0/univariateML/inst/doc/copula.R | 86 - univariateML-1.5.0/univariateML/inst/doc/copula.Rmd | 218 +- univariateML-1.5.0/univariateML/inst/doc/copula.html | 770 +++++--- univariateML-1.5.0/univariateML/inst/doc/distributions.R | 25 univariateML-1.5.0/univariateML/inst/doc/distributions.Rmd | 124 - univariateML-1.5.0/univariateML/inst/doc/distributions.html | 659 ++----- univariateML-1.5.0/univariateML/inst/doc/overview.R | 185 +- univariateML-1.5.0/univariateML/inst/doc/overview.Rmd | 411 ++-- univariateML-1.5.0/univariateML/inst/doc/overview.html | 859 ++++------ univariateML-1.5.0/univariateML/man/MaximumLikelihoodDistribution.Rd | 138 - univariateML-1.5.0/univariateML/man/ProbabilityPlots.Rd | 189 +- univariateML-1.5.0/univariateML/man/abalone.Rd | 88 - univariateML-1.5.0/univariateML/man/bootstrapml.Rd | 184 +- univariateML-1.5.0/univariateML/man/confint.univariateML.Rd | 98 - univariateML-1.5.0/univariateML/man/corbet.Rd |only univariateML-1.5.0/univariateML/man/decorator.Rd |only univariateML-1.5.0/univariateML/man/egypt.Rd | 84 univariateML-1.5.0/univariateML/man/figures/README-weibull_plot-1.png |binary univariateML-1.5.0/univariateML/man/get_start.Rd |only univariateML-1.5.0/univariateML/man/inverse_digamma.Rd |only univariateML-1.5.0/univariateML/man/listmerge.Rd | 50 univariateML-1.5.0/univariateML/man/mlbeta.Rd | 95 - univariateML-1.5.0/univariateML/man/mlbetapr.Rd | 98 - univariateML-1.5.0/univariateML/man/mlbinom.Rd |only univariateML-1.5.0/univariateML/man/mlburr.Rd |only univariateML-1.5.0/univariateML/man/mlcauchy.Rd | 94 - univariateML-1.5.0/univariateML/man/mldunif.Rd |only univariateML-1.5.0/univariateML/man/mlexp.Rd | 89 - univariateML-1.5.0/univariateML/man/mlfatigue.Rd |only univariateML-1.5.0/univariateML/man/mlgamma.Rd | 100 - univariateML-1.5.0/univariateML/man/mlged.Rd | 92 - univariateML-1.5.0/univariateML/man/mlgeom.Rd |only univariateML-1.5.0/univariateML/man/mlgompertz.Rd |only univariateML-1.5.0/univariateML/man/mlgumbel.Rd | 93 - univariateML-1.5.0/univariateML/man/mlinvburr.Rd |only univariateML-1.5.0/univariateML/man/mlinvgamma.Rd | 88 - univariateML-1.5.0/univariateML/man/mlinvgauss.Rd | 92 - univariateML-1.5.0/univariateML/man/mlinvweibull.Rd | 102 - univariateML-1.5.0/univariateML/man/mlkumar.Rd | 106 - univariateML-1.5.0/univariateML/man/mllaplace.Rd | 90 - univariateML-1.5.0/univariateML/man/mllgamma.Rd | 92 - univariateML-1.5.0/univariateML/man/mllgser.Rd |only univariateML-1.5.0/univariateML/man/mlllogis.Rd | 102 - univariateML-1.5.0/univariateML/man/mllnorm.Rd | 92 - univariateML-1.5.0/univariateML/man/mllogis.Rd | 90 - univariateML-1.5.0/univariateML/man/mllogitnorm.Rd | 92 - univariateML-1.5.0/univariateML/man/mllomax.Rd | 113 - univariateML-1.5.0/univariateML/man/mlnaka.Rd | 103 - univariateML-1.5.0/univariateML/man/mlnbinom.Rd |only univariateML-1.5.0/univariateML/man/mlnorm.Rd | 90 - univariateML-1.5.0/univariateML/man/mlparalogis.Rd |only univariateML-1.5.0/univariateML/man/mlpareto.Rd | 90 - univariateML-1.5.0/univariateML/man/mlpois.Rd |only univariateML-1.5.0/univariateML/man/mlpower.Rd | 106 - univariateML-1.5.0/univariateML/man/mlrayleigh.Rd | 88 - univariateML-1.5.0/univariateML/man/mlsged.Rd | 92 - univariateML-1.5.0/univariateML/man/mlsnorm.Rd | 86 - univariateML-1.5.0/univariateML/man/mlsstd.Rd | 86 - univariateML-1.5.0/univariateML/man/mlstd.Rd | 86 - univariateML-1.5.0/univariateML/man/mlunif.Rd | 86 - univariateML-1.5.0/univariateML/man/mlweibull.Rd | 94 - univariateML-1.5.0/univariateML/man/mlzip.Rd |only univariateML-1.5.0/univariateML/man/mlzipf.Rd |only univariateML-1.5.0/univariateML/man/model_select.Rd | 126 - univariateML-1.5.0/univariateML/man/newton_raphson_1d.Rd |only univariateML-1.5.0/univariateML/man/plot.univariateML.Rd | 68 univariateML-1.5.0/univariateML/man/plot_wrangler.Rd | 38 univariateML-1.5.0/univariateML/man/ppqq_wrangler.Rd | 42 univariateML-1.5.0/univariateML/man/simulate_default.Rd |only univariateML-1.5.0/univariateML/man/to_univariateML.Rd | 34 univariateML-1.5.0/univariateML/man/univariateML-package.Rd | 93 - univariateML-1.5.0/univariateML/man/univariateML_construct.Rd |only univariateML-1.5.0/univariateML/man/univariateML_metadata.Rd |only univariateML-1.5.0/univariateML/man/univariateML_models.Rd | 38 univariateML-1.5.0/univariateML/man/univariateML_to_function.Rd | 44 univariateML-1.5.0/univariateML/man/univariateML_to_string.Rd | 44 univariateML-1.5.0/univariateML/tests/testthat.R | 8 univariateML-1.5.0/univariateML/tests/testthat/Rplots.pdf |binary univariateML-1.5.0/univariateML/tests/testthat/test_bootstrap.R | 99 - univariateML-1.5.0/univariateML/tests/testthat/test_confint.R | 28 univariateML-1.5.0/univariateML/tests/testthat/test_functions.R | 95 - univariateML-1.5.0/univariateML/tests/testthat/test_generics.R | 80 univariateML-1.5.0/univariateML/tests/testthat/test_helpers.R | 77 univariateML-1.5.0/univariateML/tests/testthat/test_input_checks.R | 33 univariateML-1.5.0/univariateML/tests/testthat/test_mlbeta.R | 83 univariateML-1.5.0/univariateML/tests/testthat/test_mlbetapr.R | 135 - univariateML-1.5.0/univariateML/tests/testthat/test_mlbinom.R |only univariateML-1.5.0/univariateML/tests/testthat/test_mlcauchy.R | 146 - univariateML-1.5.0/univariateML/tests/testthat/test_mlexp.R | 58 univariateML-1.5.0/univariateML/tests/testthat/test_mlgamma.R | 90 - univariateML-1.5.0/univariateML/tests/testthat/test_mlged.R | 103 - univariateML-1.5.0/univariateML/tests/testthat/test_mlgumbel.R | 118 - univariateML-1.5.0/univariateML/tests/testthat/test_mlinvgamma.R | 86 - univariateML-1.5.0/univariateML/tests/testthat/test_mlinvgauss.R | 138 - univariateML-1.5.0/univariateML/tests/testthat/test_mlinvweibull.R | 72 univariateML-1.5.0/univariateML/tests/testthat/test_mlkumar.R | 122 - univariateML-1.5.0/univariateML/tests/testthat/test_mllaplace.R | 56 univariateML-1.5.0/univariateML/tests/testthat/test_mllgamma.R | 82 univariateML-1.5.0/univariateML/tests/testthat/test_mllgser.R |only univariateML-1.5.0/univariateML/tests/testthat/test_mlllogis.R | 89 - univariateML-1.5.0/univariateML/tests/testthat/test_mllnorm.R | 60 univariateML-1.5.0/univariateML/tests/testthat/test_mllogis.R | 184 +- univariateML-1.5.0/univariateML/tests/testthat/test_mllogitnorm.R | 64 univariateML-1.5.0/univariateML/tests/testthat/test_mllomax.R | 112 - univariateML-1.5.0/univariateML/tests/testthat/test_mlnaka.R | 90 - univariateML-1.5.0/univariateML/tests/testthat/test_mlnbinom.R |only univariateML-1.5.0/univariateML/tests/testthat/test_mlnorm.R | 56 univariateML-1.5.0/univariateML/tests/testthat/test_mlpareto.R | 122 - univariateML-1.5.0/univariateML/tests/testthat/test_mlpower.R | 128 - univariateML-1.5.0/univariateML/tests/testthat/test_mlrayleigh.R | 58 univariateML-1.5.0/univariateML/tests/testthat/test_mlsged.R | 102 - univariateML-1.5.0/univariateML/tests/testthat/test_mlsnorm.R | 103 - univariateML-1.5.0/univariateML/tests/testthat/test_mlsstd.R | 102 - univariateML-1.5.0/univariateML/tests/testthat/test_mlstd.R | 102 - univariateML-1.5.0/univariateML/tests/testthat/test_mlunif.R | 111 - univariateML-1.5.0/univariateML/tests/testthat/test_mlweibull.R | 92 - univariateML-1.5.0/univariateML/tests/testthat/test_mlzip.R |only univariateML-1.5.0/univariateML/tests/testthat/test_mlzipf.R |only univariateML-1.5.0/univariateML/tests/testthat/test_model_select.R | 97 - univariateML-1.5.0/univariateML/tests/testthat/test_probability_plots.R | 172 +- univariateML-1.5.0/univariateML/tests/testthat/test_utility.R | 45 univariateML-1.5.0/univariateML/vignettes/copula.Rmd | 218 +- univariateML-1.5.0/univariateML/vignettes/copula.bib | 12 univariateML-1.5.0/univariateML/vignettes/copula.md | 234 +- univariateML-1.5.0/univariateML/vignettes/copula_files/figure-html/make_data-1.png |binary univariateML-1.5.0/univariateML/vignettes/distributions.Rmd | 124 - univariateML-1.5.0/univariateML/vignettes/overview.Rmd | 411 ++-- 193 files changed, 9068 insertions(+), 8875 deletions(-)
Title: Routines for Common fMRI Processing Tasks
Description: Supports fMRI (functional magnetic resonance imaging)
analysis tasks including reading in 'CIFTI', 'GIFTI' and
'NIFTI' data, temporal filtering, nuisance regression, and
aCompCor (anatomical Components Correction) (Muschelli et al.
(2014) <doi:10.1016/j.neuroimage.2014.03.028>).
Author: Amanda Mejia [aut, cre],
Damon Pham [aut] ,
Mark Fiecas [ctb]
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Diff between fMRItools versions 0.4.7 dated 2024-05-30 and 0.5.3 dated 2025-03-04
fMRItools-0.4.7/fMRItools/man/detrend.Rd |only fMRItools-0.4.7/fMRItools/man/image.scale.Rd |only fMRItools-0.5.3/fMRItools/DESCRIPTION | 8 fMRItools-0.5.3/fMRItools/MD5 | 34 ++- fMRItools-0.5.3/fMRItools/NAMESPACE | 3 fMRItools-0.5.3/fMRItools/R/DCT_FFT_detrending.R | 199 +++++++++++++++++------ fMRItools-0.5.3/fMRItools/R/UT.R | 20 +- fMRItools-0.5.3/fMRItools/R/carpetplot.R | 1 fMRItools-0.5.3/fMRItools/R/dual_reg.R | 36 ++-- fMRItools-0.5.3/fMRItools/R/expand_RPs.R |only fMRItools-0.5.3/fMRItools/R/fsl_bptf.R | 131 ++++++++++----- fMRItools-0.5.3/fMRItools/R/norm_BOLD.R | 85 ++++++--- fMRItools-0.5.3/fMRItools/R/plot_FC.R | 15 + fMRItools-0.5.3/fMRItools/man/UT2mat.Rd | 13 - fMRItools-0.5.3/fMRItools/man/dct_bases.Rd | 2 fMRItools-0.5.3/fMRItools/man/dual_reg.Rd | 15 + fMRItools-0.5.3/fMRItools/man/expand_RPs.Rd |only fMRItools-0.5.3/fMRItools/man/fsl_bptf.Rd | 13 + fMRItools-0.5.3/fMRItools/man/image_scale.Rd |only fMRItools-0.5.3/fMRItools/man/norm_BOLD.Rd | 24 +- fMRItools-0.5.3/fMRItools/man/temporal_filter.Rd |only 21 files changed, 411 insertions(+), 188 deletions(-)
More information about likelihoodTools at CRAN
Permanent link
More information about Characterization at CRAN
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Title: Kernel Density Estimation with Parametric Starts and Asymmetric
Kernels
Description: Handles univariate non-parametric density estimation with
parametric starts and asymmetric kernels in a simple and flexible way.
Kernel density estimation with parametric starts involves fitting a
parametric density to the data before making a correction with kernel
density estimation, see Hjort & Glad (1995) <doi:10.1214/aos/1176324627>.
Asymmetric kernels make kernel density estimation more efficient on bounded
intervals such as (0, 1) and the positive half-line. Supported asymmetric
kernels are the gamma kernel of Chen (2000) <doi:10.1023/A:1004165218295>,
the beta kernel of Chen (1999) <doi:10.1016/S0167-9473(99)00010-9>, and the
copula kernel of Jones & Henderson (2007) <doi:10.1093/biomet/asm068>.
User-supplied kernels, parametric starts, and bandwidths are supported.
Author: Jonas Moss [aut, cre] ,
Martin Tveten [ctb]
Maintainer: Jonas Moss <jonas.gjertsen@gmail.com>
Diff between kdensity versions 1.1.0 dated 2020-09-30 and 1.1.1 dated 2025-03-04
DESCRIPTION | 19 LICENSE | 2 MD5 | 103 +-- NAMESPACE | 30 NEWS.md | 28 R/builtin_bandwidths.R | 396 ++++++------ R/builtin_bandwidths_get_bw.R | 136 ++-- R/builtin_bandwidths_ucv_helpers.R | 47 - R/builtin_kernels.R | 427 ++++++------- R/builtin_kernels_get_kernel.R | 85 +- R/builtin_starts_get_start.R | 89 +- R/builtin_starts_list.R | 229 +++---- R/cran.r |only R/generics.R | 532 ++++++++-------- R/kdensity.R | 611 +++++++++--------- R/kdensity_helpers.R | 241 +++---- R/utility_functions.R | 239 +++---- README.md | 403 ++++++------ build/vignette.rds |binary inst/doc/tutorial.R | 171 ++--- inst/doc/tutorial.Rmd | 317 ++++----- inst/doc/tutorial.html | 1000 ++++++++++++++++--------------- man/add_bw.Rd | 40 - man/add_kernel.Rd | 40 - man/add_start.Rd | 40 - man/bandwidths.Rd | 138 ++-- man/get_bw.Rd | 36 - man/get_kernel.Rd | 38 - man/get_kernel_start_support.Rd | 60 - man/get_range.Rd | 36 - man/get_standard_bw.Rd | 44 - man/get_start.Rd | 36 - man/kdensity.Rd | 274 ++++---- man/kernels.Rd | 174 ++--- man/listmerge.Rd | 50 - man/parametric_starts.Rd | 106 +-- man/plot.kdensity.Rd | 90 +- man/plot_helper.Rd | 72 +- man/recycle.Rd | 46 - man/support_compatible.Rd | 38 - tests/testthat.R | 8 tests/testthat/Rplots.pdf |binary tests/testthat/test_assignments.R | 32 tests/testthat/test_bandwidth.r | 48 - tests/testthat/test_generics.r | 23 tests/testthat/test_generics_invisible.R | 16 tests/testthat/test_kdensity.R | 108 +-- tests/testthat/test_kdensity_helpers.R | 16 tests/testthat/test_kernels.r | 42 - tests/testthat/test_starts.r | 60 - tests/testthat/test_univariateML.R | 83 +- tests/testthat/test_utility_functions.R | 60 - vignettes/tutorial.Rmd | 317 ++++----- 53 files changed, 3727 insertions(+), 3549 deletions(-)
Title: Tidy Structural Equation Modeling
Description: A tidy workflow for generating, estimating, reporting,
and plotting structural equation models using 'lavaan', 'OpenMx', or
'Mplus'. Throughout this workflow, elements of syntax, results, and graphs
are represented as 'tidy' data, making them easy to customize.
Includes functionality to estimate latent class analyses.
Author: Caspar J. van Lissa [aut, cre]
,
Mauricio Garnier-Villarreal [ctb]
,
Frank C Gootjes [ctb]
Maintainer: Caspar J. van Lissa <c.j.vanlissa@tilburguniversity.edu>
Diff between tidySEM versions 0.2.7 dated 2024-06-04 and 0.2.8 dated 2025-03-04
DESCRIPTION | 16 MD5 | 157 +- NAMESPACE | 19 R/blrt.R | 15 R/dagitty.R | 100 + R/lr_vml.R | 16 R/mixture-3step.R | 24 R/mixture-pseudo_class.R | 976 ++++++++-------- R/mixture_gradient.R | 10 R/mixture_predict.R | 2 R/mx_dummies.R | 6 R/mx_mixture.R | 117 + R/mx_simple_thresholds.R | 230 +-- R/mx_switch_labels.R | 2 R/mx_temp_start.R | 30 R/openmx_functions.R | 28 R/plot-bivariate.R | 21 R/plot-plot_sem.R | 29 R/results-table_fit.R | 2 R/results-table_results_mx_model.R | 21 R/syntax-add_paths.R | 26 R/syntax-run.R | 27 R/syntax_data_dictionary.R | 4 R/syntax_factor.R | 1 R/utilities.R | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Generating_syntax.R | 72 - inst/doc/Generating_syntax.Rmd | 2 inst/doc/Generating_syntax.html | 10 inst/doc/Plotting_graphs.R | 218 +-- inst/doc/Plotting_graphs.html | 34 inst/doc/SMART_LCA_checklist.Rmd | 256 ++-- inst/doc/SMART_LCA_checklist.html | 4 inst/doc/Tabulating_results.R | 70 - inst/doc/Tabulating_results.Rmd | 2 inst/doc/Tabulating_results.html | 2 inst/doc/lca_confirmatory.R | 252 ++-- inst/doc/lca_confirmatory.html | 2 inst/doc/lca_exploratory.R | 230 +-- inst/doc/lca_exploratory.html | 2 inst/doc/lca_lcga.R | 412 +++--- inst/doc/lca_lcga.html | 2 inst/doc/lca_ordinal.R | 156 +- inst/doc/lca_ordinal.html | 2 inst/doc/sem_graph.R | 58 inst/doc/sem_graph.html | 20 man/BCH.Rd | 2 man/add_paths.Rd | 16 man/append_class_draws.Rd | 2 man/lr_lmr.Rd | 2 man/lr_test.Rd | 2 man/mixture_starts.Rd | 12 man/mx_dummies.Rd | 2 man/mx_growth_mixture.Rd | 4 man/mx_lca.Rd | 4 man/mx_mixture.Rd | 2 man/mx_profiles.Rd | 2 man/plot_bivariate.Rd | 2 man/pseudo_class.Rd | 2 man/tidy_sem.Rd | 4 tests/testthat.R | 2 tests/testthat/test-BLRT_lr_lmr.R | 35 tests/testthat/test-dagitty_nodes_edges.R |only tests/testthat/test-lr_test_negative_df.R | 28 tests/testthat/test-lrt_bch.R | 69 - tests/testthat/test-lrt_multigroup.R | 21 tests/testthat/test-multigroup_mx.R | 89 - tests/testthat/test-namespace_checks_dominique.R | 34 tests/testthat/test-openmx_binary.R | 243 ++- tests/testthat/test-openmx_ordinal.R | 133 +- tests/testthat/test-openmx_ordinal_and_cont.R | 134 +- tests/testthat/test-openmx_ordinal_methods.R | 346 ++--- tests/testthat/test-openmx_ordinal_thresh_constraints.R | 101 - tests/testthat/test-plot_plot_prob.R | 1 tests/testthat/test-plot_profiles_varyingcov.R | 1 tests/testthat/test-pseudo_class_technique.R | 2 vignettes/Generating_syntax.Rmd | 2 vignettes/SMART_LCA_checklist.Rmd | 256 ++-- vignettes/Tabulating_results.Rmd | 2 80 files changed, 2681 insertions(+), 2565 deletions(-)
Title: Estimating (Time-Dependent) Drift Diffusion Models
Description: Fit and explore Drift Diffusion Models (DDMs),
a common tool in psychology for describing decision processes in simple
tasks. It can handle both time-independent and time-dependent DDMs. You
either choose prebuilt models or create your own, and the package takes
care of model predictions and parameter estimation. Model predictions
are derived via the numerical solutions provided by Richter, Ulrich, and
Janczyk (2023, <doi:10.1016/j.jmp.2023.102756>).
Author: Valentin Koob [cre, aut, cph],
Thomas Richter [aut, cph],
Markus Janczyk [aut]
Maintainer: Valentin Koob <v.koob@web.de>
Diff between dRiftDM versions 0.2.1 dated 2025-01-08 and 0.2.2 dated 2025-03-04
dRiftDM-0.2.1/dRiftDM/R/formatting_dm_fits_ids.R |only dRiftDM-0.2.1/dRiftDM/R/formatting_rest.R |only dRiftDM-0.2.1/dRiftDM/inst/doc/use_ddm_models.R |only dRiftDM-0.2.1/dRiftDM/inst/doc/use_ddm_models.Rmd |only dRiftDM-0.2.1/dRiftDM/inst/doc/use_ddm_models.html |only dRiftDM-0.2.1/dRiftDM/man/plot.list_stats_dm.Rd |only dRiftDM-0.2.1/dRiftDM/tests/testthat/_snaps/formatting_rest.md |only dRiftDM-0.2.1/dRiftDM/tests/testthat/fixtures/dm_fits_ids |only dRiftDM-0.2.1/dRiftDM/tests/testthat/fixtures/dm_fits_ids.R |only dRiftDM-0.2.1/dRiftDM/tests/testthat/test-formatting_rest.R |only dRiftDM-0.2.1/dRiftDM/vignettes/use_ddm_models.Rmd |only dRiftDM-0.2.2/dRiftDM/DESCRIPTION | 14 dRiftDM-0.2.2/dRiftDM/MD5 | 168 +-- dRiftDM-0.2.2/dRiftDM/NAMESPACE | 45 dRiftDM-0.2.2/dRiftDM/NEWS.md | 29 dRiftDM-0.2.2/dRiftDM/R/core_dm.R | 552 ++++++++-- dRiftDM-0.2.2/dRiftDM/R/core_estimate.R | 2 dRiftDM-0.2.2/dRiftDM/R/core_estimate_wrapper.R | 14 dRiftDM-0.2.2/dRiftDM/R/core_flex_prms.R | 23 dRiftDM-0.2.2/dRiftDM/R/core_stats.R | 91 + dRiftDM-0.2.2/dRiftDM/R/dRiftDM-package.R | 19 dRiftDM-0.2.2/dRiftDM/R/extended_s3_methods.R | 51 dRiftDM-0.2.2/dRiftDM/R/formatting_coefs_dm.R |only dRiftDM-0.2.2/dRiftDM/R/formatting_drift_dm.R | 39 dRiftDM-0.2.2/dRiftDM/R/formatting_fits_ids_dm.R |only dRiftDM-0.2.2/dRiftDM/R/formatting_flex_prms.R | 6 dRiftDM-0.2.2/dRiftDM/R/formatting_stats_dm.R |only dRiftDM-0.2.2/dRiftDM/R/formatting_traces_dm.R |only dRiftDM-0.2.2/dRiftDM/R/models.R | 16 dRiftDM-0.2.2/dRiftDM/R/plotting.R | 46 dRiftDM-0.2.2/dRiftDM/R/utils.R | 4 dRiftDM-0.2.2/dRiftDM/README.md | 75 - 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Title: Clean and Standardize Epidemiological Data
Description: Cleaning and standardizing tabular data package, tailored
specifically for curating epidemiological data. It streamlines various
data cleaning tasks that are typically expected when working with
datasets in epidemiology. It returns the processed data in the same
format, and generates a comprehensive report detailing the outcomes of
each cleaning task.
Author: Karim Mane [aut, cre] ,
Thibaut Jombart [ctb] .),
Abdoelnaser Degoot [aut] ,
Bankole Ahadzie [aut],
Nuredin Mohammed [aut],
Bubacarr Bah [aut] ,
Hugo Gruson [ctb, rev] ,
Pratik R. Gupte [rev] ,
James M. Azam [rev] ,
Joshua W. Lambert [rev] ,
Chris Ha [...truncated...]
Maintainer: Karim Mane <karim.mane@lshtm.ac.uk>
Diff between cleanepi versions 1.0.2 dated 2024-06-17 and 1.1.0 dated 2025-03-04
cleanepi-1.0.2/cleanepi/man/date_check_column_existence.Rd |only cleanepi-1.0.2/cleanepi/man/date_convert_and_update.Rd |only cleanepi-1.0.2/cleanepi/man/date_i_extract_string.Rd |only cleanepi-1.0.2/cleanepi/man/date_i_find_format.Rd |only cleanepi-1.0.2/cleanepi/man/default_cleanepi_settings.Rd |only cleanepi-1.0.2/cleanepi/man/get_sum.Rd |only cleanepi-1.0.2/cleanepi/man/make_readcap_dictionary.Rd |only cleanepi-1.0.2/cleanepi/man/scan_columns.Rd |only cleanepi-1.1.0/cleanepi/DESCRIPTION | 62 cleanepi-1.1.0/cleanepi/LICENSE | 2 cleanepi-1.1.0/cleanepi/MD5 | 224 cleanepi-1.1.0/cleanepi/NAMESPACE | 2 cleanepi-1.1.0/cleanepi/NEWS.md |only cleanepi-1.1.0/cleanepi/R/check_date_sequence.R | 105 cleanepi-1.1.0/cleanepi/R/clean_data.R | 241 - cleanepi-1.1.0/cleanepi/R/clean_data_helpers.R | 246 - cleanepi-1.1.0/cleanepi/R/cleanepi-package.R | 1 cleanepi-1.1.0/cleanepi/R/column_name_standardization.R | 213 cleanepi-1.1.0/cleanepi/R/convert_numeric_to_date.R | 29 cleanepi-1.1.0/cleanepi/R/convert_to_numeric.R | 121 cleanepi-1.1.0/cleanepi/R/date_standardization_helpers.R | 525 +- cleanepi-1.1.0/cleanepi/R/default_cleanepi_settings.R | 56 cleanepi-1.1.0/cleanepi/R/dictionary_based_cleaning.R | 271 - cleanepi-1.1.0/cleanepi/R/find_and_remove_duplicates.R | 116 cleanepi-1.1.0/cleanepi/R/guess_dates.R | 391 - cleanepi-1.1.0/cleanepi/R/print_report.R | 172 cleanepi-1.1.0/cleanepi/R/remove_constants.R | 195 cleanepi-1.1.0/cleanepi/R/replace_missing_values.R | 78 cleanepi-1.1.0/cleanepi/R/span.R | 107 cleanepi-1.1.0/cleanepi/R/standardize_date.R | 160 cleanepi-1.1.0/cleanepi/R/standardize_subject_ids.R | 197 cleanepi-1.1.0/cleanepi/R/utils-pipe.R |only cleanepi-1.1.0/cleanepi/R/utils-potools.R |only cleanepi-1.1.0/cleanepi/R/utils.R | 201 cleanepi-1.1.0/cleanepi/README.md | 494 +- cleanepi-1.1.0/cleanepi/build/vignette.rds |binary cleanepi-1.1.0/cleanepi/inst/WORDLIST | 17 cleanepi-1.1.0/cleanepi/inst/doc/cleanepi.R | 518 +- 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cleanepi-1.1.0/cleanepi/tests/testthat/test-clean_data.R | 156 cleanepi-1.1.0/cleanepi/tests/testthat/test-clean_data_helpers.R | 64 cleanepi-1.1.0/cleanepi/tests/testthat/test-column_name_standardization.R | 50 cleanepi-1.1.0/cleanepi/tests/testthat/test-convert_numeric_to_date.R | 44 cleanepi-1.1.0/cleanepi/tests/testthat/test-convert_to_numeric.R | 37 cleanepi-1.1.0/cleanepi/tests/testthat/test-dictionary_based_cleaning.R | 91 cleanepi-1.1.0/cleanepi/tests/testthat/test-find_and_remove_duplicates.R | 23 cleanepi-1.1.0/cleanepi/tests/testthat/test-print_report.R | 90 cleanepi-1.1.0/cleanepi/tests/testthat/test-remove_constants.R | 126 cleanepi-1.1.0/cleanepi/tests/testthat/test-replace_missing_values.R | 25 cleanepi-1.1.0/cleanepi/tests/testthat/test-span.R | 151 cleanepi-1.1.0/cleanepi/tests/testthat/test-standardize_date.R | 232 cleanepi-1.1.0/cleanepi/tests/testthat/test-standardize_subject_ids.R | 215 cleanepi-1.1.0/cleanepi/tests/testthat/test-utils.R | 84 cleanepi-1.1.0/cleanepi/vignettes/cleanepi.Rmd | 617 +- cleanepi-1.1.0/cleanepi/vignettes/design_principle.Rmd | 403 - 124 files changed, 6750 insertions(+), 5895 deletions(-)
Title: Flexible Bayesian Optimization
Description: A modern and flexible approach to Bayesian Optimization / Model
Based Optimization building on the 'bbotk' package. 'mlr3mbo' is a toolbox
providing both ready-to-use optimization algorithms as well as their fundamental
building blocks allowing for straightforward implementation of custom
algorithms. Single- and multi-objective optimization is supported as well as
mixed continuous, categorical and conditional search spaces. Moreover, using
'mlr3mbo' for hyperparameter optimization of machine learning models within the
'mlr3' ecosystem is straightforward via 'mlr3tuning'. Examples of ready-to-use
optimization algorithms include Efficient Global Optimization by Jones et al.
(1998) <doi:10.1023/A:1008306431147>, ParEGO by Knowles (2006)
<doi:10.1109/TEVC.2005.851274> and SMS-EGO by Ponweiser et al. (2008)
<doi:10.1007/978-3-540-87700-4_78>.
Author: Lennart Schneider [cre, aut] ,
Jakob Richter [aut] ,
Marc Becker [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Florian Pfisterer [aut] ,
Martin Binder [aut],
Sebastian Fischer [aut] ,
Michael H. Buselli [cph],
Wessel Dankers [cph],
Carlos Fonseca [...truncated...]
Maintainer: Lennart Schneider <lennart.sch@web.de>
Diff between mlr3mbo versions 0.2.8 dated 2024-11-21 and 0.2.9 dated 2025-03-04
DESCRIPTION | 8 ++--- MD5 | 36 +++++++++++------------ NEWS.md | 24 +++++++++------ R/AcqFunction.R | 12 +++---- R/AcqOptimizer.R | 4 +- R/ResultAssignerSurrogate.R | 10 +++--- man/AcqFunction.Rd | 12 +++---- man/AcqOptimizer.Rd | 4 +- tests/testthat.R | 1 tests/testthat/helper.R | 16 ++++++++-- tests/testthat/setup.R | 19 ++++++++++-- tests/testthat/teardown.R | 5 +-- tests/testthat/test_AcqFunctionMulti.R | 2 - tests/testthat/test_ResultAssignerArchive.R | 16 +++++----- tests/testthat/test_ResultAssignerSurrogate.R | 16 +++++----- tests/testthat/test_SurrogateLearnerCollection.R | 8 ++--- tests/testthat/test_TunerADBO.R | 2 - tests/testthat/test_TunerAsyncMbo.R | 2 - tests/testthat/test_TunerMbo.R | 2 - 19 files changed, 117 insertions(+), 82 deletions(-)
Title: Generalized Linear Mixed Models using Adaptive Gaussian
Quadrature
Description: Fits generalized linear mixed models for a single grouping factor under
maximum likelihood approximating the integrals over the random effects with an
adaptive Gaussian quadrature rule; Jose C. Pinheiro and Douglas M. Bates (1995)
<doi:10.1080/10618600.1995.10474663>.
Author: Dimitris Rizopoulos [aut, cre]
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Diff between GLMMadaptive versions 0.9-1 dated 2023-10-17 and 0.9-7 dated 2025-03-04
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 2 +- R/Functions.R | 12 +++++++----- R/methods.R | 18 ++++++++++-------- R/mixed_fit.R | 2 +- R/mixed_model.R | 4 ++-- build/vignette.rds |binary inst/doc/GLMMadaptive.R | 6 +++--- inst/doc/GLMMadaptive.html | 10 +++++----- man/GLMMadaptive.Rd | 4 ++-- 11 files changed, 45 insertions(+), 41 deletions(-)
Title: Characterise Tables of an OMOP Common Data Model Instance
Description: Summarises key information in data mapped to the Observational
Medical Outcomes Partnership (OMOP) common data model. Assess suitability to
perform specific epidemiological studies and explore the different domains
to obtain feasibility counts and trends.
Author: Marta Alcalde-Herraiz [aut] ,
Kim Lopez-Guell [aut] ,
Elin Rowlands [aut] ,
Cecilia Campanile [aut, cre] ,
Edward Burn [aut] ,
Marti Catala [aut]
Maintainer: Cecilia Campanile <cecilia.campanile@ndorms.ox.ac.uk>
Diff between OmopSketch versions 0.2.2 dated 2025-01-28 and 0.3.0 dated 2025-03-04
OmopSketch-0.2.2/OmopSketch/inst/doc/A-summarise_clinical_tables_records.R |only OmopSketch-0.2.2/OmopSketch/inst/doc/A-summarise_clinical_tables_records.Rmd |only OmopSketch-0.2.2/OmopSketch/inst/doc/A-summarise_clinical_tables_records.html |only OmopSketch-0.2.2/OmopSketch/inst/doc/B-summarise_concept_set_counts.R |only OmopSketch-0.2.2/OmopSketch/inst/doc/B-summarise_concept_set_counts.Rmd |only OmopSketch-0.2.2/OmopSketch/inst/doc/B-summarise_concept_set_counts.html |only OmopSketch-0.2.2/OmopSketch/inst/doc/C-summarise_observation_period.R |only OmopSketch-0.2.2/OmopSketch/inst/doc/C-summarise_observation_period.Rmd |only OmopSketch-0.2.2/OmopSketch/inst/doc/C-summarise_observation_period.html |only OmopSketch-0.2.2/OmopSketch/vignettes/A-summarise_clinical_tables_records.Rmd |only OmopSketch-0.2.2/OmopSketch/vignettes/B-summarise_concept_set_counts.Rmd |only OmopSketch-0.2.2/OmopSketch/vignettes/C-summarise_observation_period.Rmd |only OmopSketch-0.3.0/OmopSketch/DESCRIPTION | 14 OmopSketch-0.3.0/OmopSketch/MD5 | 74 ++-- OmopSketch-0.3.0/OmopSketch/NEWS.md |only OmopSketch-0.3.0/OmopSketch/R/documentationHelper.R | 9 OmopSketch-0.3.0/OmopSketch/R/summariseClinicalRecords.R | 3 OmopSketch-0.3.0/OmopSketch/R/summariseConceptCounts.R | 2 OmopSketch-0.3.0/OmopSketch/R/summariseConceptIdCounts.R | 57 ++- OmopSketch-0.3.0/OmopSketch/R/summariseConceptSetCounts.R | 15 OmopSketch-0.3.0/OmopSketch/R/summariseInObservation.R | 14 OmopSketch-0.3.0/OmopSketch/R/summariseMissingData.R | 167 ++++++---- OmopSketch-0.3.0/OmopSketch/R/summariseRecordCount.R | 4 OmopSketch-0.3.0/OmopSketch/R/tableClinicalRecords.R | 10 OmopSketch-0.3.0/OmopSketch/R/tableConceptIdCounts.R | 10 OmopSketch-0.3.0/OmopSketch/R/tableMissingData.R | 10 OmopSketch-0.3.0/OmopSketch/R/tableObservationPeriod.R | 9 OmopSketch-0.3.0/OmopSketch/R/tableOmopSnapshot.R | 14 OmopSketch-0.3.0/OmopSketch/build/vignette.rds |binary OmopSketch-0.3.0/OmopSketch/inst/doc/characterisation.R |only OmopSketch-0.3.0/OmopSketch/inst/doc/characterisation.Rmd |only OmopSketch-0.3.0/OmopSketch/inst/doc/characterisation.html |only OmopSketch-0.3.0/OmopSketch/inst/doc/summarise_clinical_tables_records.R |only OmopSketch-0.3.0/OmopSketch/inst/doc/summarise_clinical_tables_records.Rmd |only OmopSketch-0.3.0/OmopSketch/inst/doc/summarise_clinical_tables_records.html |only OmopSketch-0.3.0/OmopSketch/inst/doc/summarise_concept_set_counts.R |only OmopSketch-0.3.0/OmopSketch/inst/doc/summarise_concept_set_counts.Rmd |only OmopSketch-0.3.0/OmopSketch/inst/doc/summarise_concept_set_counts.html |only OmopSketch-0.3.0/OmopSketch/inst/doc/summarise_observation_period.R |only OmopSketch-0.3.0/OmopSketch/inst/doc/summarise_observation_period.Rmd |only OmopSketch-0.3.0/OmopSketch/inst/doc/summarise_observation_period.html |only OmopSketch-0.3.0/OmopSketch/man/interval.Rd |only OmopSketch-0.3.0/OmopSketch/man/summariseConceptIdCounts.Rd | 11 OmopSketch-0.3.0/OmopSketch/man/summariseMissingData.Rd | 7 OmopSketch-0.3.0/OmopSketch/tests/testthat/test-summariseClinicalRecords.R | 2 OmopSketch-0.3.0/OmopSketch/tests/testthat/test-summariseConceptIdCounts.R | 120 ++++++- OmopSketch-0.3.0/OmopSketch/tests/testthat/test-summariseInObservation.R | 1 OmopSketch-0.3.0/OmopSketch/tests/testthat/test-summariseMissingData.R | 108 ++++++ OmopSketch-0.3.0/OmopSketch/tests/testthat/test-summariseObservationPeriod.R | 3 OmopSketch-0.3.0/OmopSketch/vignettes/characterisation.Rmd |only OmopSketch-0.3.0/OmopSketch/vignettes/summarise_clinical_tables_records.Rmd |only OmopSketch-0.3.0/OmopSketch/vignettes/summarise_concept_set_counts.Rmd |only OmopSketch-0.3.0/OmopSketch/vignettes/summarise_observation_period.Rmd |only 53 files changed, 506 insertions(+), 158 deletions(-)