Title: Marshall-Olkin Shock Models with Semi-Independent Time
Description: Provides tools for analyzing Marshall-Olkin shock models semi-independent time.
It includes interactive 'shiny' applications for exploring copula-based dependence
structures, along with functions for modeling and visualization. The methods are
based on Mijanovic and Popovic (2024, submitted) "An R package for Marshall-Olkin
shock models with semi-independent times."
Author: Andjela Mijanovic [aut, cre],
Bozidar Popovic [aut]
Maintainer: Andjela Mijanovic <andjela.m@ucg.ac.me>
Diff between MOsemiind versions 0.1.0 dated 2025-02-04 and 0.1.2 dated 2026-02-28
DESCRIPTION | 6 MD5 | 4 inst/app/app.R | 876 ++++++++++++++++++++++++++++++--------------------------- 3 files changed, 480 insertions(+), 406 deletions(-)
Title: Advanced Graphics and Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment. Also includes
a graphics device for creating drawing onto images using pixel coordinates.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between magick versions 2.9.0 dated 2025-09-08 and 2.9.1 dated 2026-02-28
DESCRIPTION | 8 ++-- MD5 | 20 +++++------ NEWS | 3 + R/color.R | 2 - R/ggplot2.R | 6 +-- build/vignette.rds |binary inst/doc/intro.Rmd | 2 - inst/doc/intro.html | 91 ++++++++++++++++++++++++++-------------------------- man/color.Rd | 2 - man/image_ggplot.Rd | 4 +- vignettes/intro.Rmd | 2 - 11 files changed, 72 insertions(+), 68 deletions(-)
Title: Basic Functions in Knowledge Space Theory Using Matrix
Representation
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstMatrix' package
provides basic functionalities to generate, handle, and manipulate
knowledge structures and knowledge spaces. Opposed to the 'kst'
package, 'kstMatrix' uses matrix representations for knowledge
structures. Furthermore, 'kstMatrix' contains several knowledge spaces
developed by the research group around Cornelia Dowling through
querying experts.
Author: Cord Hockemeyer [aut, cre],
Peter Steiner [aut],
Wai Wong [aut]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstMatrix versions 2.2-1 dated 2026-01-23 and 2.3-0 dated 2026-02-28
kstMatrix-2.2-1/kstMatrix/man/kmbasis.kmsurmisefunction.Rd |only kstMatrix-2.2-1/kstMatrix/man/kmbasis.kmsurmiserelation.Rd |only kstMatrix-2.2-1/kstMatrix/man/kmbasis.matrix.Rd |only kstMatrix-2.3-0/kstMatrix/Changelog | 8 + kstMatrix-2.3-0/kstMatrix/DESCRIPTION | 8 - kstMatrix-2.3-0/kstMatrix/MD5 | 56 +++---- kstMatrix-2.3-0/kstMatrix/NAMESPACE | 3 kstMatrix-2.3-0/kstMatrix/R/kmbasis.R | 29 ++- kstMatrix-2.3-0/kstMatrix/R/kmbasis.kmsurmisefunction.R | 35 ++-- kstMatrix-2.3-0/kstMatrix/R/kmbasis.kmsurmiserelation.R | 4 kstMatrix-2.3-0/kstMatrix/R/kmbasis.matrix.R | 97 ++++++------- kstMatrix-2.3-0/kstMatrix/R/kmfamset.R | 8 - kstMatrix-2.3-0/kstMatrix/R/kmspace.R | 2 kstMatrix-2.3-0/kstMatrix/R/kmsrvalidate.R | 2 kstMatrix-2.3-0/kstMatrix/R/kmstructure.R | 4 kstMatrix-2.3-0/kstMatrix/R/kmtrivial.R | 2 kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.R | 25 --- kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.kmdata.R |only kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.kmfamset.R |only kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.kmstructure.R |only kstMatrix-2.3-0/kstMatrix/R/plot.R | 3 kstMatrix-2.3-0/kstMatrix/inst/doc/kstMatrix.html | 28 +-- kstMatrix-2.3-0/kstMatrix/man/kmSF2basis.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmSR2basis.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmSRvalidate.Rd | 2 kstMatrix-2.3-0/kstMatrix/man/kmbasis.Rd | 77 +++++++++- kstMatrix-2.3-0/kstMatrix/man/kmspace.Rd | 2 kstMatrix-2.3-0/kstMatrix/man/kmstructure.Rd | 2 kstMatrix-2.3-0/kstMatrix/man/kmsurmisefunction.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmsurmiserelation.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmunionclosure.Rd | 16 +- kstMatrix-2.3-0/kstMatrix/man/plot.Rd | 3 32 files changed, 248 insertions(+), 184 deletions(-)
Title: Consistent API for Hypothesis Testing
Description: Provides a consistent API for hypothesis testing built on
principles from 'Structure and Interpretation of Computer Programs':
data abstraction, closure (combining tests yields tests), and
higher-order functions (transforming tests). Implements z-tests,
Wald tests, likelihood ratio tests, Fisher's method for combining
p-values, and multiple testing corrections. Designed for use by
other packages that want to wrap their hypothesis tests in a
consistent interface.
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <lex@metafunctor.com>
Diff between hypothesize versions 0.10.0 dated 2025-12-11 and 0.11.0 dated 2026-02-28
hypothesize-0.10.0/hypothesize/man/dof.hypothesis_test.Rd |only hypothesize-0.10.0/hypothesize/man/is_significant_at.hypothesis_test.Rd |only hypothesize-0.10.0/hypothesize/man/pval.hypothesis_test.Rd |only hypothesize-0.10.0/hypothesize/man/test_stat.hypothesis_test.Rd |only hypothesize-0.11.0/hypothesize/DESCRIPTION | 12 hypothesize-0.11.0/hypothesize/MD5 | 53 hypothesize-0.11.0/hypothesize/NAMESPACE | 12 hypothesize-0.11.0/hypothesize/NEWS.md | 24 hypothesize-0.11.0/hypothesize/R/hypothesize.R | 618 ++++++++-- hypothesize-0.11.0/hypothesize/README.md | 22 hypothesize-0.11.0/hypothesize/build/vignette.rds |binary hypothesize-0.11.0/hypothesize/inst/doc/boolean-algebra.R |only hypothesize-0.11.0/hypothesize/inst/doc/boolean-algebra.Rmd |only hypothesize-0.11.0/hypothesize/inst/doc/boolean-algebra.html |only hypothesize-0.11.0/hypothesize/inst/doc/introduction.R | 6 hypothesize-0.11.0/hypothesize/inst/doc/introduction.Rmd | 16 hypothesize-0.11.0/hypothesize/inst/doc/introduction.html | 97 - hypothesize-0.11.0/hypothesize/man/adjust_pval.Rd | 8 hypothesize-0.11.0/hypothesize/man/complement_test.Rd |only hypothesize-0.11.0/hypothesize/man/dof.Rd | 13 hypothesize-0.11.0/hypothesize/man/hypothesize-package.Rd |only hypothesize-0.11.0/hypothesize/man/intersection_test.Rd |only hypothesize-0.11.0/hypothesize/man/invert_test.Rd |only hypothesize-0.11.0/hypothesize/man/is_significant_at.Rd | 17 hypothesize-0.11.0/hypothesize/man/lower.Rd |only hypothesize-0.11.0/hypothesize/man/print.confidence_set.Rd |only hypothesize-0.11.0/hypothesize/man/print.hypothesis_test.Rd | 6 hypothesize-0.11.0/hypothesize/man/pval.Rd | 13 hypothesize-0.11.0/hypothesize/man/score_test.Rd |only hypothesize-0.11.0/hypothesize/man/test_stat.Rd | 13 hypothesize-0.11.0/hypothesize/man/union_test.Rd |only hypothesize-0.11.0/hypothesize/man/upper.Rd |only hypothesize-0.11.0/hypothesize/man/wald_test.Rd | 54 hypothesize-0.11.0/hypothesize/tests/testthat/test-hypothesis-tests.R | 427 ++++++ hypothesize-0.11.0/hypothesize/vignettes/boolean-algebra.Rmd |only hypothesize-0.11.0/hypothesize/vignettes/introduction.Rmd | 16 36 files changed, 1223 insertions(+), 204 deletions(-)
Title: Compute Analytic Hierarchy Process
Description: Compute a tree level hierarchy, judgment matrix, consistency index and ratio, priority vectors, hierarchic synthesis and rank. Based on the book entitled "Models, Methods, Concepts and Applications of the Analytic Hierarchy Process" by Saaty and Vargas (2012, ISBN 978-1-4614-3597-6).
Author: Luciane Ferreira Alcoforado [aut, cre],
Lyncoln Sousa [aut],
Orlando Celso Longo [aut],
Alessandra Simao [ctb],
Steven Dutt Ross [ctb],
Leonardo Filgueira [ctb]
Maintainer: Luciane Ferreira Alcoforado <lucianea@id.uff.br>
Diff between AHPWR versions 0.1.0 dated 2022-12-06 and 0.1.2 dated 2026-02-28
AHPWR-0.1.0/AHPWR/tests |only AHPWR-0.1.2/AHPWR/DESCRIPTION | 12 AHPWR-0.1.2/AHPWR/MD5 | 51 AHPWR-0.1.2/AHPWR/NAMESPACE | 6 AHPWR-0.1.2/AHPWR/R/ahp_s.R | 2 AHPWR-0.1.2/AHPWR/R/flow_chart-OLD.R |only AHPWR-0.1.2/AHPWR/R/flow_chart.R | 175 +-- AHPWR-0.1.2/AHPWR/R/hello.R |only AHPWR-0.1.2/AHPWR/R/ler.R | 58 - AHPWR-0.1.2/AHPWR/R/matrix_ahp-OLD.R |only AHPWR-0.1.2/AHPWR/R/matrix_ahp.R | 70 - AHPWR-0.1.2/AHPWR/R/xlsx_ahp.R | 67 - AHPWR-0.1.2/AHPWR/build/vignette.rds |binary AHPWR-0.1.2/AHPWR/inst/doc/Intro_to_AHP.R | 4 AHPWR-0.1.2/AHPWR/inst/doc/Intro_to_AHP.Rmd | 2 AHPWR-0.1.2/AHPWR/inst/doc/Intro_to_AHP.html | 1378 ++++++++++++--------------- AHPWR-0.1.2/AHPWR/man/ahp_s.Rd | 2 AHPWR-0.1.2/AHPWR/man/autoVetor.Rd | 52 - AHPWR-0.1.2/AHPWR/man/calcula_prioridades.Rd | 40 AHPWR-0.1.2/AHPWR/man/flow_chart.Rd | 82 - AHPWR-0.1.2/AHPWR/man/formata_tabela.Rd | 44 AHPWR-0.1.2/AHPWR/man/ler.Rd | 57 - AHPWR-0.1.2/AHPWR/man/matrix_ahp.Rd | 72 - AHPWR-0.1.2/AHPWR/man/matriz_julgamento.Rd | 48 AHPWR-0.1.2/AHPWR/man/normaliza.Rd | 50 AHPWR-0.1.2/AHPWR/man/transforma_tabela.Rd | 50 AHPWR-0.1.2/AHPWR/man/xlsx_ahp.Rd | 70 - AHPWR-0.1.2/AHPWR/vignettes/Intro_to_AHP.Rmd | 2 28 files changed, 1160 insertions(+), 1234 deletions(-)
Title: Inferring Age-Dependent Disease Topic from Diagnosis Data
Description: We propose an age-dependent topic modelling (ATM) model,
providing a low-rank representation of longitudinal records of
hundreds of distinct diseases in large electronic health record data sets. The model
assigns to each individual topic weights for several disease topics;
each disease topic reflects a set of diseases that tend to co-occur as
a function of age, quantified by age-dependent topic loadings for each
disease. The model assumes that for each disease diagnosis, a topic is
sampled based on the individual’s topic weights (which sum to 1 across
topics, for a given individual), and a disease is sampled based on the
individual’s age and the age-dependent topic loadings (which sum to 1
across diseases, for a given topic at a given age). The model
generalises the Latent Dirichlet Allocation (LDA) model by allowing
topic loadings for each topic to vary with age.
References: Jiang (2023) <doi:10.1038/s41588-023-01522-8>.
Author: Xilin Jiang [aut, cre]
Maintainer: Xilin Jiang <jiangxilin1@gmail.com>
Diff between AgeTopicModels versions 0.1.0 dated 2025-10-21 and 0.3.0 dated 2026-02-28
DESCRIPTION | 11 - MD5 | 14 - NEWS.md | 7 R/ATM_inference.R | 329 ++++++++++++++++++++++++---------------- README.md | 10 - data/HES_age_example.rda |binary data/HES_icd10_example.rda |binary tests/testthat/test-inference.R | 34 ++++ 8 files changed, 263 insertions(+), 142 deletions(-)
More information about AgeTopicModels at CRAN
Permanent link
Title: Multivariate Random Forest with Compositional Responses
Description: Multivariate random forests with compositional responses and Euclidean predictors is performed. The compositional data are first transformed using the additive log-ratio transformation, or the alpha-transformation of Tsagris, Preston and Wood (2011), <doi:10.48550/arXiv.1106.1451>, and then the multivariate random forest of Rahman R., Otridge J. and Pal R. (2017), <doi:10.1093/bioinformatics/btw765>, is applied.
Author: Michail Tsagris [aut, cre],
Christos Adam [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between CompositionalRF versions 1.4 dated 2025-09-07 and 1.6 dated 2026-02-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/alfa.comp.rf.R | 2 +- R/cv.alfacomprf.R | 6 +++--- man/CompositionalRF-package.Rd | 4 ++-- src/mrf.cpp | 4 ++-- 6 files changed, 17 insertions(+), 17 deletions(-)
More information about CompositionalRF at CRAN
Permanent link
Title: Sumerian Cuneiform Text Analysis
Description: Provides functions for converting transliterated Sumerian texts to sign names and cuneiform characters,
creating and querying dictionaries, analyzing the structure of
Sumerian words, and creating translations. Includes a built-in dictionary and supports both
forward lookup (Sumerian to English) and reverse lookup (English to
Sumerian).
Author: Robin Wellmann [aut, cre]
Maintainer: Robin Wellmann <ro.wellmann@gmail.com>
Diff between sumer versions 1.1.0 dated 2026-02-18 and 1.2.0 dated 2026-02-28
sumer-1.1.0/sumer/man/sumer-package.Rd |only sumer-1.2.0/sumer/DESCRIPTION | 16 - sumer-1.2.0/sumer/MD5 | 56 +++-- sumer-1.2.0/sumer/NAMESPACE | 5 sumer-1.2.0/sumer/R/extract_skeleton_entries.R |only sumer-1.2.0/sumer/R/guess_substr_info.R |only sumer-1.2.0/sumer/R/init_substr_info.R |only sumer-1.2.0/sumer/R/look_up.R | 15 + sumer-1.2.0/sumer/R/mark_ngrams.R | 4 sumer-1.2.0/sumer/R/mark_skeleton_entries.R |only sumer-1.2.0/sumer/R/ngram_frequencies.R | 118 +----------- sumer-1.2.0/sumer/R/plot_sign_grammar.R | 32 ++- sumer-1.2.0/sumer/R/sign_grammar.R | 11 - sumer-1.2.0/sumer/R/skeleton.R | 215 ++++++++-------------- sumer-1.2.0/sumer/R/substr_position.R |only sumer-1.2.0/sumer/R/translate.R |only sumer-1.2.0/sumer/R/zzz.R | 2 sumer-1.2.0/sumer/build |only sumer-1.2.0/sumer/inst/doc |only sumer-1.2.0/sumer/man/extract_skeleton_entries.Rd |only sumer-1.2.0/sumer/man/guess_substr_info.Rd |only sumer-1.2.0/sumer/man/init_substr_info.Rd |only sumer-1.2.0/sumer/man/look_up.Rd | 3 sumer-1.2.0/sumer/man/make_dictionary.Rd | 2 sumer-1.2.0/sumer/man/mark_ngrams.Rd | 4 sumer-1.2.0/sumer/man/mark_skeleton_entries.Rd |only sumer-1.2.0/sumer/man/ngram_frequencies.Rd | 8 sumer-1.2.0/sumer/man/plot_sign_grammar.Rd | 5 sumer-1.2.0/sumer/man/sign_grammar.Rd | 4 sumer-1.2.0/sumer/man/skeleton.Rd | 75 +++---- sumer-1.2.0/sumer/man/substr_position.Rd |only sumer-1.2.0/sumer/man/translate.Rd |only sumer-1.2.0/sumer/src |only sumer-1.2.0/sumer/vignettes |only 34 files changed, 261 insertions(+), 314 deletions(-)
Title: Data Base Backend for 'mlr3'
Description: Extends the 'mlr3' package with a backend to transparently
work with databases such as 'SQLite', 'DuckDB', 'MySQL', 'MariaDB', or
'PostgreSQL'. The package provides three additional backends:
'DataBackendDplyr' relies on the abstraction of package 'dbplyr' to
interact with most DBMS. 'DataBackendDuckDB' operates on 'DuckDB' data
bases and also on Apache Parquet files. 'DataBackendPolars' operates on
'Polars' data frames.
Author: Michel Lang [aut] ,
Lona Koers [aut],
Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3db versions 0.7.0 dated 2025-10-06 and 0.7.1 dated 2026-02-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ tests/testthat/test_train_predict_dplyr.R | 2 +- tests/testthat/test_train_predict_duckdb.R | 2 +- tests/testthat/test_train_predict_polars.R | 2 +- 6 files changed, 16 insertions(+), 12 deletions(-)
Title: Tools to Manage a Parametric Function that Describes Phenology
and More
Description: Functions used to fit and test the phenology of species based on counts. Based on Girondot, M. (2010) <doi:10.3354/esr00292> for the phenology function, Girondot, M. (2017) <doi:10.1016/j.ecolind.2017.05.063> for the convolution of negative binomial, Girondot, M. and Rizzo, A. (2015) <doi:10.2993/etbi-35-02-337-353.1> for Bayesian estimate, Pfaller JB, ..., Girondot M (2019) <doi:10.1007/s00227-019-3545-x> for tag-loss estimate, Hancock J, ..., Girondot M (2019) <doi:10.1016/j.ecolmodel.2019.04.013> for nesting history, Laloe J-O, ..., Girondot M, Hays GC (2020) <doi:10.1007/s00227-020-03686-x> for aggregating several seasons.
Author: Marc Girondot [aut, cre]
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between phenology versions 2025.11.12 dated 2025-11-12 and 2026.2.28 dated 2026-02-28
DESCRIPTION | 8 ++-- MD5 | 22 +++++------ NEWS | 5 ++ R/add_phenology.R | 2 + R/phenology-package.R | 8 ++-- R/phenology_MHmcmc.R | 5 ++ R/plot.phenology.R | 92 ++++++++++++++++++++++++++++++++--------------- R/summary.phenology.R | 24 ++++++++++-- man/figures/imgfile.png |binary man/phenology-package.Rd | 8 ++-- man/phenology_MHmcmc.Rd | 5 ++ man/plot.phenology.Rd | 7 ++- 12 files changed, 124 insertions(+), 62 deletions(-)
Title: Tools for Various R Functions Helpers
Description: Contains miscellaneous functions useful for managing 'NetCDF' files (see <https://en.wikipedia.org/wiki/NetCDF>), get moon phase and time for sun rise and fall, tide level, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot [aut, cre]
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between HelpersMG versions 2025.12.22 dated 2025-12-23 and 2026.2.28 dated 2026-02-28
DESCRIPTION | 8 +++---- MD5 | 38 +++++++++++++++++++------------------ NAMESPACE | 1 NEWS | 3 +- R/HelpersMG-package.R | 4 +-- R/Probability_Best_Model_WAIC.R |only R/extractAIC.R | 2 + R/fitdistrquantiles.R | 2 + R/flexit.R | 2 + R/sysdata.rda |binary inst/shiny/cutter/ui.R | 2 - man/ExtractAIC.glm.Rd | 3 ++ man/FormatCompareAIC.Rd | 1 man/HelpersMG-package.Rd | 4 +-- man/Probability_Best_Model_WAIC.Rd |only man/compare_AIC.Rd | 1 man/compare_AICc.Rd | 1 man/compare_BIC.Rd | 1 man/figures/TB.png |binary man/fitdistrquantiles.Rd | 2 + man/flexit.Rd | 2 + 21 files changed, 49 insertions(+), 28 deletions(-)
Title: 'Rcpp' Integration for Numerical Computing Libraries
Description: A collection of open source libraries for numerical computing
(numerical integration, optimization, etc.) and their integration with
'Rcpp'.
Author: Yixuan Qiu [aut, cre],
Ralf Stubner [ctb] ,
Sreekumar Balan [aut] ,
Matt Beall [aut] ,
Mark Sauder [aut] ,
Naoaki Okazaki [aut] ,
Thomas Hahn [aut]
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between RcppNumerical versions 0.6-0 dated 2023-09-06 and 0.7-0 dated 2026-02-28
DESCRIPTION | 11 MD5 | 54 README.md | 287 +++ build/vignette.rds |binary inst/AUTHORS | 2 inst/NEWS.Rd | 25 inst/doc/introduction.R | 21 inst/doc/introduction.Rmd | 289 +++- inst/doc/introduction.html | 867 +++++++----- inst/include/Func.h | 6 inst/include/RcppNumerical.h | 5 inst/include/integration/wrapper.h | 115 + inst/include/optimization/LBFGS.h | 12 inst/include/optimization/LBFGSB.h | 2 inst/include/optimization/LBFGSpp/BFGSMat.h | 138 + inst/include/optimization/LBFGSpp/BKLDLT.h | 2 inst/include/optimization/LBFGSpp/Cauchy.h | 2 inst/include/optimization/LBFGSpp/LineSearchBacktracking.h | 3 inst/include/optimization/LBFGSpp/LineSearchBracketing.h | 11 inst/include/optimization/LBFGSpp/LineSearchMoreThuente.h | 429 ++++- inst/include/optimization/LBFGSpp/LineSearchNocedalWright.h | 11 inst/include/optimization/LBFGSpp/Param.h | 2 inst/include/optimization/LBFGSpp/SubspaceMin.h | 2 inst/include/optimization/wrapper.h | 44 src/cuhre/rcpp_stop.h |only src/cuhre/stddecl.h | 6 src/fastLR.cpp | 4 src/rcpp_stop.cpp |only vignettes/introduction.Rmd | 289 +++- 29 files changed, 1955 insertions(+), 684 deletions(-)
Title: Fast, Compact Iterators and Tools
Description: A fresh take on iterators in R. Designed to be cross-compatible with the 'iterators' package, but using the 'nextOr' method will offer better performance as well as more compact code. With batteries included: includes a collection of iterator constructors and combinators ported and refined from the 'iterators', 'itertools', and 'itertools2' packages.
Author: Peter Meilstrup [cre, aut, cph],
Folashade Daniel [aut],
Revolution Analytics [aut, cph],
Steve Weston [aut, cph],
John A. Ramey [aut, cph],
Kayla Schaefer [aut],
Hadley Wickham [aut]
Maintainer: Peter Meilstrup <peter.meilstrup@gmail.com>
Diff between iterors versions 1.0 dated 2023-05-18 and 1.0.1 dated 2026-02-28
iterors-1.0.1/iterors/DESCRIPTION | 10 iterors-1.0.1/iterors/MD5 | 102 +- iterors-1.0.1/iterors/NAMESPACE | 16 iterors-1.0.1/iterors/NEWS.md | 9 iterors-1.0.1/iterors/R/iRNGStream.R | 20 iterors-1.0.1/iterors/R/icombinations.R | 6 iterors-1.0.1/iterors/R/icount.R | 30 iterors-1.0.1/iterors/R/ienumerate.R | 12 iterors-1.0.1/iterors/R/igrid.R | 5 iterors-1.0.1/iterors/R/ipermutations.R | 5 iterors-1.0.1/iterors/R/ireadBin.R | 8 iterors-1.0.1/iterors/R/ireadLines.R | 15 iterors-1.0.1/iterors/R/ireaddf.R | 8 iterors-1.0.1/iterors/R/irecord.R | 12 iterors-1.0.1/iterors/R/iseq.R | 16 iterors-1.0.1/iterors/R/itabulate.R | 6 iterors-1.0.1/iterors/R/iunique.R | 13 iterors-1.0.1/iterors/R/rng.R | 61 + iterors-1.0.1/iterors/README.md | 32 iterors-1.0.1/iterors/build/vignette.rds |binary iterors-1.0.1/iterors/inst/doc/README.R | 26 iterors-1.0.1/iterors/inst/doc/README.Rmd | 4 iterors-1.0.1/iterors/inst/doc/README.html | 255 ++++--- iterors-1.0.1/iterors/inst/doc/categories.Rmd | 41 - iterors-1.0.1/iterors/inst/doc/categories.html | 278 +++++--- iterors-1.0.1/iterors/inst/doc/cross-reference.Rmd | 2 iterors-1.0.1/iterors/inst/doc/cross-reference.html | 49 - iterors-1.0.1/iterors/inst/doc/iterors.html | 287 ++++---- iterors-1.0.1/iterors/inst/doc/writing.html | 695 +++++++++++++------- iterors-1.0.1/iterors/man/i_RNGStream.Rd |only iterors-1.0.1/iterors/man/i_combinations.Rd |only iterors-1.0.1/iterors/man/i_count.Rd |only iterors-1.0.1/iterors/man/i_dedup.Rd |only iterors-1.0.1/iterors/man/i_div.Rd |only iterors-1.0.1/iterors/man/i_enumerate.Rd | 11 iterors-1.0.1/iterors/man/i_grid.Rd |only iterors-1.0.1/iterors/man/i_permutations.Rd |only iterors-1.0.1/iterors/man/i_read.table.Rd |only iterors-1.0.1/iterors/man/i_readBin.Rd |only iterors-1.0.1/iterors/man/i_readLines.Rd |only iterors-1.0.1/iterors/man/i_readdf.Rd |only iterors-1.0.1/iterors/man/i_rle.Rd | 2 iterors-1.0.1/iterors/man/i_seq.Rd |only iterors-1.0.1/iterors/man/i_tabulate.Rd |only iterors-1.0.1/iterors/man/i_unique.Rd | 2 iterors-1.0.1/iterors/man/makeIwrapper.Rd | 22 iterors-1.0.1/iterors/man/r_to_py.iteror.Rd | 2 iterors-1.0.1/iterors/man/record.Rd | 5 iterors-1.0.1/iterors/man/rng.Rd | 123 +++ iterors-1.0.1/iterors/vignettes/README.Rmd | 4 iterors-1.0.1/iterors/vignettes/categories.Rmd | 41 - iterors-1.0.1/iterors/vignettes/cross-reference.Rmd | 2 iterors-1.0/iterors/man/iRNGStream.Rd |only iterors-1.0/iterors/man/icombinations.Rd |only iterors-1.0/iterors/man/icount.Rd |only iterors-1.0/iterors/man/idedup.Rd |only iterors-1.0/iterors/man/idiv.Rd |only iterors-1.0/iterors/man/igrid.Rd |only iterors-1.0/iterors/man/ipermutations.Rd |only iterors-1.0/iterors/man/iread.table.Rd |only iterors-1.0/iterors/man/ireadBin.Rd |only iterors-1.0/iterors/man/ireadLines.Rd |only iterors-1.0/iterors/man/ireaddf.Rd |only iterors-1.0/iterors/man/iseq.Rd |only iterors-1.0/iterors/man/itabulate.Rd |only 65 files changed, 1470 insertions(+), 767 deletions(-)
Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Ross Bennett [ctb],
Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between xts versions 0.14.1 dated 2024-10-15 and 0.14.2 dated 2026-02-28
xts-0.14.1/xts/src/subset.old.c |only xts-0.14.1/xts/src/xts.c |only xts-0.14.2/xts/DESCRIPTION | 6 xts-0.14.2/xts/MD5 | 45 +++--- xts-0.14.2/xts/NEWS.md | 22 +++ xts-0.14.2/xts/R/plot.R | 21 +-- xts-0.14.2/xts/R/rollapply.xts.R | 17 ++ xts-0.14.2/xts/README.md | 6 xts-0.14.2/xts/build/vignette.rds |binary xts-0.14.2/xts/inst/doc/xts-faq.pdf |binary xts-0.14.2/xts/inst/doc/xts.pdf |binary xts-0.14.2/xts/inst/include/xts.h | 7 - xts-0.14.2/xts/inst/tinytest/test-endpoints.R | 3 xts-0.14.2/xts/inst/tinytest/test-rollapply.R |only xts-0.14.2/xts/src/attr.c | 182 ++++++++++---------------- xts-0.14.2/xts/src/endpoints.c | 145 ++++++++++---------- xts-0.14.2/xts/src/extract_col.c | 4 xts-0.14.2/xts/src/init.c | 1 xts-0.14.2/xts/src/isXts.c | 22 +-- xts-0.14.2/xts/src/merge.c | 8 - xts-0.14.2/xts/src/na.c | 2 xts-0.14.2/xts/src/rbind.c | 6 xts-0.14.2/xts/src/startofyear.c | 20 +- xts-0.14.2/xts/src/subset.c | 16 +- xts-0.14.2/xts/src/unique.time.c | 6 25 files changed, 263 insertions(+), 276 deletions(-)
Title: Wrapper for MUMPS Library
Description: Some basic features of 'MUMPS' (Multifrontal Massively Parallel
sparse direct Solver) are wrapped in a class whose methods can be used
for sequentially solving a sparse linear system (symmetric or not)
with one or many right hand sides (dense or sparse).
There is a possibility to do separately symbolic analysis,
LU (or LDL^t) factorization and system solving.
Third part ordering libraries are included and can be used: 'PORD', 'METIS', 'SCOTCH'.
'MUMPS' method was first described in Amestoy et al. (2001) <doi:10.1137/S0895479899358194>
and Amestoy et al. (2006) <doi:10.1016/j.parco.2005.07.004>.
Author: Serguei Sokol [aut, cre],
Emmanuel Agullo [ctb],
Patrick Amestoy [ctb, cph],
Maurice Bremond [ctb],
Alfredo Buttari [ctb],
Philippe Combes [ctb],
Marie Durand [ctb],
Aurelia Fevre [ctb],
Abdou Guermouche [ctb],
Guillaume Joslin [ctb],
Jacko Koster [c [...truncated...]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between rmumps versions 5.2.1-36 dated 2025-12-12 and 5.2.1-37 dated 2026-02-28
DESCRIPTION | 9 MD5 | 155 ++++++------- NEWS | 114 +++++---- inst/COPYRIGHTS | 2 inst/include/dmumps_c.h | 23 + inst/include/rcpp_errwarn.h |only inst/include/rmumps.h | 2 man/rmumps-package.Rd | 2 src/Makevars | 3 src/Makevars.seq | 3 src/RcppExports.cpp | 14 - src/lib/MUMPS_5.2.1/PORD/include/macros.h | 11 src/lib/MUMPS_5.2.1/PORD/lib/bucket.c | 10 src/lib/MUMPS_5.2.1/PORD/lib/ddbisect.c | 40 +-- src/lib/MUMPS_5.2.1/PORD/lib/ddcreate.c | 28 +- src/lib/MUMPS_5.2.1/PORD/lib/gbipart.c | 12 - src/lib/MUMPS_5.2.1/PORD/lib/gbisect.c | 40 +-- src/lib/MUMPS_5.2.1/PORD/lib/gelim.c | 90 +++---- src/lib/MUMPS_5.2.1/PORD/lib/graph.c | 14 - src/lib/MUMPS_5.2.1/PORD/lib/interface.c | 36 +-- src/lib/MUMPS_5.2.1/PORD/lib/minpriority.c | 26 +- src/lib/MUMPS_5.2.1/PORD/lib/multisector.c | 8 src/lib/MUMPS_5.2.1/PORD/lib/nestdiss.c | 8 src/lib/MUMPS_5.2.1/PORD/lib/symbfac.c | 16 - src/lib/MUMPS_5.2.1/PORD/lib/tree.c | 20 - src/lib/MUMPS_5.2.1/src/mumps_common.h | 3 src/lib/MUMPS_5.2.1/src/mumps_io.c | 16 - src/lib/MUMPS_5.2.1/src/mumps_io_thread.c | 2 src/lib/MUMPS_5.2.1/src/mumps_metis64.c | 2 src/lib/metis-5.1.0/GKlib/b64.c | 2 src/lib/metis-5.1.0/GKlib/csr.c | 8 src/lib/metis-5.1.0/GKlib/error.c | 8 src/lib/metis-5.1.0/GKlib/fkvkselect.c | 8 src/lib/metis-5.1.0/GKlib/getopt.c | 26 +- src/lib/metis-5.1.0/GKlib/gk_macros.h | 19 - src/lib/metis-5.1.0/GKlib/gkregex.c | 2 src/lib/metis-5.1.0/GKlib/graph.c | 18 - src/lib/metis-5.1.0/GKlib/mcore.c | 16 - src/lib/metis-5.1.0/GKlib/memory.c | 8 src/lib/metis-5.1.0/GKlib/pdb.c | 24 +- src/lib/metis-5.1.0/libmetis/balance.c | 30 +- src/lib/metis-5.1.0/libmetis/checkgraph.c | 18 - src/lib/metis-5.1.0/libmetis/coarsen.c | 18 - src/lib/metis-5.1.0/libmetis/compress.c | 6 src/lib/metis-5.1.0/libmetis/contig.c | 18 - src/lib/metis-5.1.0/libmetis/debug.c | 8 src/lib/metis-5.1.0/libmetis/fm.c | 28 +- src/lib/metis-5.1.0/libmetis/initpart.c | 20 - src/lib/metis-5.1.0/libmetis/kmetis.c | 2 src/lib/metis-5.1.0/libmetis/kwayfm.c | 56 ++-- src/lib/metis-5.1.0/libmetis/mesh.c | 2 src/lib/metis-5.1.0/libmetis/metislib.h | 3 src/lib/metis-5.1.0/libmetis/minconn.c | 28 +- src/lib/metis-5.1.0/libmetis/mincover.c | 6 src/lib/metis-5.1.0/libmetis/ometis.c | 6 src/lib/metis-5.1.0/libmetis/options.c | 178 +++++++-------- src/lib/metis-5.1.0/libmetis/parmetis.c | 14 - src/lib/metis-5.1.0/libmetis/pmetis.c | 2 src/lib/metis-5.1.0/libmetis/separator.c | 4 src/lib/metis-5.1.0/libmetis/sfm.c | 18 - src/lib/metis-5.1.0/libmetis/stat.c | 16 - src/lib/metis-5.1.0/libmetis/timing.c | 28 +- src/lib/metis-5.1.0/libmetis/wspace.c | 2 src/lib/scotch_6.0.9/src/libscotch/common.h | 3 src/lib/scotch_6.0.9/src/libscotch/common_error.c | 4 src/lib/scotch_6.0.9/src/libscotch/dummysizes.c | 16 - src/lib/scotch_6.0.9/src/libscotch/library_errcom.c | 4 src/lib/scotch_6.0.9/src/libscotch/library_error.c | 4 src/lib/scotch_6.0.9/src/libscotch/library_error_exit.c | 4 src/lib/scotch_6.0.9/src/libscotch/mesh_coarsen.c | 12 - src/lib/scotch_6.0.9/src/libscotch/parser_ll.c | 2 src/lib/scotch_6.0.9/src/libscotch/parser_yy.c | 26 +- src/lib/scotch_6.0.9/src/libscotch/vdgraph_separate_df.c | 2 src/lib/scotch_6.0.9/src/libscotch/vmesh_separate_fm.c | 6 src/lib/scotch_6.0.9/src/libscotch/wgraph_part_gg.c | 4 src/lib/scotch_6.0.9/src/libscotch/wgraph_part_gp.c | 4 src/rmumps_module.cpp | 20 + tests/testthat.R | 4 tests/testthat/test_rmumps.R | 2 79 files changed, 760 insertions(+), 716 deletions(-)
Title: Partial Least Squares Regression for Cox Models and Related
Techniques
Description: Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings <doi:10.1093/bioinformatics/btu660>, Bastien, P., Bertrand, F., Meyer N., Maumy-Bertrand, M. (2015), Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data, Bioinformatics, 31(3):397-404. Cross validation criteria were studied in <doi:10.48550/arXiv.1810.02962>, Bertrand, F., Bastien, Ph. and Maumy-Bertrand, M. (2018), Cross validating extensions of kernel, sparse or regular partial least squares regression models to censored data.
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between plsRcox versions 1.8.0 dated 2025-09-14 and 1.8.1 dated 2026-02-28
DESCRIPTION | 12 ++-- MD5 | 12 ++-- NAMESPACE | 5 + R/plsRcox-package.R | 5 - README.md | 140 +++++++++++++++++++------------------------------ build/partial.rdb |binary man/plsRcox-package.Rd | 4 - 7 files changed, 74 insertions(+), 104 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD, Plot
Functions
Description: Fit and compare nonlinear mixed-effects models in
differential equations with flexible dosing information commonly seen
in pharmacokinetics and pharmacodynamics (Almquist, Leander, and
Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation
solving is by compiled C code provided in the 'rxode2' package (Wang,
Hallow, and James 2015 <doi:10.1002/psp4.12052>). This package is for
'ggplot2' plotting methods for 'nlmixr2' objects.
Author: Matthew Fidler [aut, cre] ,
Bill Denney [ctb] ,
Wenping Wang [aut],
Vipul Mann [aut]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2plot versions 5.0.0 dated 2025-11-29 and 5.0.1 dated 2026-02-28
DESCRIPTION | 13 +- MD5 | 12 +- NEWS.md | 8 + R/vpcPlot.R | 186 ++++++++++++++++++++++++++++++++++++--- man/vpcPlot.Rd | 19 +++ tests/testthat/test-plots-cens.R | 6 - tests/testthat/test-plots.R | 16 +-- 7 files changed, 218 insertions(+), 42 deletions(-)
Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Description: This model fitting tool incorporates cyclic coordinate descent and
majorization-minimization approaches to fit a variety of regression models
found in large-scale observational healthcare data. Implementations focus
on computational optimization and fine-scale parallelization to yield
efficient inference in massive datasets. Please see:
Suchard, Simpson, Zorych, Ryan and Madigan (2013) <doi:10.1145/2414416.2414791>.
Author: Marc A. Suchard [aut, cre],
Martijn J. Schuemie [aut],
Trevor R. Shaddox [aut],
Yuxi Tian [aut],
Jianxiao Yang [aut],
Eric Kawaguchi [aut],
Sushil Mittal [ctb],
Observational Health Data Sciences and Informatics [cph],
Marcus Geelnard [cph, ctb] ,
Ru [...truncated...]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between Cyclops versions 3.6.0 dated 2025-07-18 and 3.7.0 dated 2026-02-28
DESCRIPTION | 6 MD5 | 28 ++-- NEWS.md | 10 + R/ModelFit.R | 2 R/Residuals.R | 42 ++++-- man/testProportionality.Rd | 8 - src/Makevars.in | 26 --- src/Makevars.win.in | 26 --- src/RcppCyclopsInterface.cpp | 1 src/RcppModelData.cpp | 4 src/cyclops/CyclicCoordinateDescent.cpp | 24 +++ src/cyclops/engine/ModelSpecifics.hpp | 212 +++++++++++++------------------- tests/testthat/test-bootstrap.R | 12 - tests/testthat/test-residuals.R | 120 +++++++++++++----- tools/configure.R | 2 15 files changed, 273 insertions(+), 250 deletions(-)
Title: 'Blowfish' Key Derivation and Password Hashing
Description: Bindings to the 'blowfish' password hashing algorithm
<https://www.openbsd.org/papers/bcrypt-paper.pdf> derived from
the 'OpenBSD' implementation.
Author: Jeroen Ooms [aut, cre] ,
Damien Miller [cph] ,
Niels Provos [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between bcrypt versions 1.2.0 dated 2024-10-04 and 1.2.1 dated 2026-02-28
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS | 3 +++ src/bcrypt/sha2.c | 4 +--- 4 files changed, 12 insertions(+), 11 deletions(-)
Title: Black-Box Optimization Toolkit
Description: Features highly configurable search spaces via the 'paradox'
package and optimizes every user-defined objective function. The
package includes several optimization algorithms e.g. Random Search,
Iterated Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband
(in 'mlr3hyperband'). bbotk is the base package of 'mlr3tuning',
'mlr3fselect' and 'miesmuschel'.
Author: Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut],
Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between bbotk versions 1.8.1 dated 2025-11-26 and 1.9.0 dated 2026-02-28
DESCRIPTION | 20 +- MD5 | 118 +++++++------ NAMESPACE | 4 NEWS.md | 10 + R/ArchiveAsync.R | 18 +- R/ArchiveBatch.R | 11 + R/Codomain.R | 27 +-- R/EvalInstance.R |only R/OptimInstance.R | 79 +++------ R/OptimInstanceBatch.R | 2 R/OptimizerAsync.R | 7 R/OptimizerBatch.R | 2 R/Terminator.R | 4 R/TerminatorStagnation.R | 9 - R/TerminatorStagnationBatch.R | 9 - R/TerminatorStagnationHypervolume.R | 6 R/bbotk_reflections.R | 2 R/conditions.R |only R/helper.R | 7 build/partial.rdb |binary man/ArchiveAsync.Rd | 6 man/Codomain.Rd | 5 man/EvalInstance.Rd |only man/OptimInstance.Rd | 53 +----- man/OptimInstanceAsync.Rd | 6 man/OptimInstanceAsyncMultiCrit.Rd | 4 man/OptimInstanceAsyncSingleCrit.Rd | 4 man/OptimInstanceBatch.Rd | 6 man/OptimInstanceBatchMultiCrit.Rd | 4 man/OptimInstanceBatchSingleCrit.Rd | 4 man/OptimInstanceMultiCrit.Rd | 4 man/OptimInstanceSingleCrit.Rd | 4 man/bbotk_conditions.Rd |only man/bbotk_reflections.Rd | 2 man/choose_search_space.Rd |only man/terminated_error.Rd | 2 tests/testthat/_snaps/TerminatorClockTime.md | 1 tests/testthat/_snaps/TerminatorCombo.md | 1 tests/testthat/_snaps/TerminatorEvals.md | 3 tests/testthat/_snaps/TerminatorNone.md | 2 tests/testthat/_snaps/TerminatorPerfReached.md | 1 tests/testthat/_snaps/TerminatorRunTime.md | 1 tests/testthat/_snaps/TerminatorStagnation.md | 1 tests/testthat/_snaps/TerminatorStagnationBatch.md | 2 tests/testthat/helper.R | 16 - tests/testthat/helper_rush.R |only tests/testthat/teardown.R | 1 tests/testthat/test_ArchiveAsync.R | 79 +++++++-- tests/testthat/test_ArchiveAsyncFrozen.R | 16 + tests/testthat/test_ArchiveBatch.R | 24 ++ tests/testthat/test_CallbackAsync.R | 157 +++++++++--------- tests/testthat/test_EvalInstance.R |only tests/testthat/test_Objective.R | 68 +++++++ tests/testthat/test_OptimInstanceAsyncSingleCrit.R | 89 +++------- tests/testthat/test_OptimizerAsynDesignPoints.R | 18 +- tests/testthat/test_OptimizerAsynGridSearch.R | 17 + tests/testthat/test_OptimizerAsync.R | 143 ++++------------ tests/testthat/test_OptimizerAsyncRandomSearch.R | 18 +- tests/testthat/test_OptimizerBatchLocalSearch.R | 1 tests/testthat/test_TerminatorStagnation.R | 14 + tests/testthat/test_TerminatorStagnationBatch.R | 19 ++ tests/testthat/test_TerminatorStagnationHypervolume.R | 14 + tests/testthat/test_conditions.R |only tests/testthat/test_mlr_callbacks.R | 17 - 64 files changed, 623 insertions(+), 539 deletions(-)
Title: Classification Measures when Subclasses are Involved
Description: Accuracy metrics are commonly used to assess the discriminating ability of diagnostic tests or biomarkers. Among them, metrics based on the ROC framework are particularly popular. When classification involves subclasses, the package 'CompClassMetrics' includes functions that can provide the point estimate, confidence interval as well as true values if a parametric setting is known. For more details see Nan and Tian (2025) <doi:10.1177/09622802251343600>, Nan and Tian (2023) <doi:10.1002/sim.9908>, Feng and Tian (2020) <doi:10.1177/0962280220938077> and Wang et al (2016) <doi:10.1002/sim.6843>.
Author: Nan Nan [aut, cre]
Maintainer: Nan Nan <nannan@buffalo.edu>
Diff between CompClassMetrics versions 1.0.0 dated 2026-01-18 and 1.0.1 dated 2026-02-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/Orderstatistics.R | 5 +++-- R/True_values.R | 10 ++++++---- 4 files changed, 15 insertions(+), 12 deletions(-)
More information about CompClassMetrics at CRAN
Permanent link
Title: Tree-Based Scan Statistics
Description: Implementation of unconditional Bernoulli Scan Statistic developed
by Kulldorff et al. (2003) <doi:10.1111/1541-0420.00039>
for hierarchical tree structures. Tree-based Scan Statistics are an
exploratory method to identify event clusters across the space of a
hierarchical tree.
Author: Joshua P. Entrop [aut, cre, cph] ,
Viktor Wintzell [aut]
Maintainer: Joshua P. Entrop <joshuaentrop@posteo.de>
Diff between TreeMineR versions 1.0.3 dated 2025-04-05 and 1.0.4 dated 2026-02-27
DESCRIPTION | 12 +- MD5 | 20 ++-- NEWS.md | 6 + R/TreeMineR.R | 75 ++++++++++------- README.md | 38 +++++++- build/vignette.rds |binary data/diagnoses.rda |binary inst/doc/Tree-based-scan-statistics.html | 29 +++--- man/TreeMineR.Rd | 31 +++---- tests/testthat/_snaps/TreeMineR.md | 136 +++++++++++++++---------------- tests/testthat/test-TreeMineR.R | 17 +++ 11 files changed, 218 insertions(+), 146 deletions(-)
Title: Interactive Plotting for Functional Data Analyses
Description: Produces Shiny applications for different types of popular functional data analyses. The functional data analyses are implemented in the refund package, then refund.shiny reads in the refund object and implements an object-specific set of plots based on the object class using S3.
Author: Julia Wrobel [aut, cre],
Jeff Goldsmith [aut]
Maintainer: Julia Wrobel <julia.wrobel@emory.edu>
Diff between refund.shiny versions 1.1 dated 2025-10-15 and 1.1.1 dated 2026-02-27
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/plot_shiny.R | 2 ++ 3 files changed, 8 insertions(+), 6 deletions(-)
Title: Analyze the Structure of Musical Scales
Description: Analysis of musical scales (& modes, grooves, etc.) in the vein of
Sherrill 2025 <doi:10.1215/00222909-11595194>.
The initials MCT in the package title refer to the article's title: "Modal
Color Theory." Offers support for conventional musical pitch class set
theory as developed by Forte (1973, ISBN: 9780300016109) and David Lewin
(1987, ISBN: 9780300034936), as well as for the continuous geometries of
Callender, Quinn, & Tymoczko (2008) <doi:10.1126/science.1153021>.
Identifies structural properties of scales and calculates derived values
(sign vector, color number, brightness ratio, etc.). Creates plots such as
"brightness graphs" which visualize these properties.
Author: Paul Sherrill [aut, cre, cph]
Maintainer: Paul Sherrill <paul.sherrill@utah.edu>
Diff between musicMCT versions 0.3.0 dated 2025-11-02 and 0.4.0 dated 2026-02-27
DESCRIPTION | 8 - MD5 | 82 +++++++------- NAMESPACE | 2 NEWS.md | 28 ++++- R/anaglyph.R | 6 - R/colors.R | 29 ++++- R/howfree.R | 29 +++-- R/ianring.R | 9 + R/ineqsym.R | 49 ++++++-- R/lewin.R | 12 +- R/make_infrared_ineqmat.R | 6 - R/move_along_line.R |only R/projection.R | 155 ++++++++++++++++++++++++---- R/set_theory.R | 4 R/utils.R | 18 +++ R/wellformedness.R | 15 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/musicMCT.Rmd | 43 ++++++- inst/doc/musicMCT.html | 38 +++--- inst/doc/visualizing_higher_dimensions.R | 5 inst/doc/visualizing_higher_dimensions.Rmd | 61 ++++++++++- inst/doc/visualizing_higher_dimensions.html | 61 +++++------ man/anazero_fingerprint.Rd | 6 - man/clampitt_q.Rd | 2 man/howfree.Rd | 16 ++ man/ianring.Rd | 7 + man/ineqsym.Rd | 11 + man/iswellformed.Rd | 2 man/isym.Rd | 142 ++++++++++++------------- man/make_infrared_ineqmat.Rd | 6 - man/move_to_hyperplane.Rd |only man/point_on_flat.Rd |only man/scale_palette.Rd | 31 +++++ tests/testthat/test-colors.R | 10 + tests/testthat/test-ianring.R | 3 tests/testthat/test-ineqsym.R | 30 +++++ tests/testthat/test-move_along_line.R |only tests/testthat/test-projection.R | 51 +++++++++ tests/testthat/test-simplify_scale.R | 18 +++ tests/testthat/test-utils.R | 12 +- tests/testthat/test-wellformedness.R | 6 + vignettes/musicMCT.Rmd | 43 ++++++- vignettes/visualizing_higher_dimensions.Rmd | 61 ++++++++++- 44 files changed, 847 insertions(+), 270 deletions(-)
Title: Read and Write PNG Files with Configurable Decoder/Encoder
Options
Description: Read and write PNG images with arrays, rasters, native
rasters, numeric arrays, integer arrays, raw vectors and indexed
values. This PNG encoder exposes configurable internal options
enabling the user to select a speed-size tradeoff. For example,
disabling compression can speed up writing PNG by a factor of 50.
Multiple image formats are supported including raster, native rasters,
and integer and numeric arrays at color depths of 1, 2, 3 or 4. 16-bit
images are also supported. This implementation uses the 'libspng' 'C'
library which is available from
<https://github.com/randy408/libspng/>.
Author: Mike Cheng [aut, cre, cph],
Randy408 [aut, cph] ,
The PNG Reference Library Authors [aut, cph],
Cosmin Truta [cph] ,
Glenn Randers-Pehrson [cph] ,
Andreas Dilger [cph],
Guy Eric Schalnat [cph],
Mike Klein [ctb] ,
Matt Sarett [ctb] ,
James Yu [ctb] ,
[...truncated...]
Maintainer: Mike Cheng <mikefc@coolbutuseless.com>
Diff between fastpng versions 0.1.7 dated 2025-01-13 and 0.1.8 dated 2026-02-27
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 10 +++++----- NEWS.md | 4 ++++ build/vignette.rds |binary src/R-read-png.c | 35 ++++++++++++++++++++++++++++++----- 6 files changed, 44 insertions(+), 15 deletions(-)
Title: Behavioral Insight Design: A Toolkit for Integrating Behavioral
Science in UI/UX Design
Description: Provides a framework and toolkit to guide R dashboard developers in
implementing the Behavioral Insight Design (BID) framework. The package offers
functions for documenting each of the five stages (Interpret, Notice,
Anticipate, Structure, and Validate), along with a comprehensive concept
dictionary. Works with both 'shiny' applications and 'Quarto' dashboards.
Author: Jeremy Winget [aut, cre]
Maintainer: Jeremy Winget <contact@jrwinget.com>
Diff between bidux versions 0.3.3 dated 2025-11-19 and 0.4.0 dated 2026-02-27
bidux-0.3.3/bidux/man/layout_rationale.Rd |only bidux-0.3.3/bidux/man/suggest_layout_from_previous.Rd |only bidux-0.4.0/bidux/DESCRIPTION | 19 bidux-0.4.0/bidux/MD5 | 242 - bidux-0.4.0/bidux/NAMESPACE | 5 bidux-0.4.0/bidux/NEWS.md | 45 bidux-0.4.0/bidux/R/bid_anticipate.R | 89 bidux-0.4.0/bidux/R/bid_interpret.R | 166 bidux-0.4.0/bidux/R/bid_notice.R | 27 bidux-0.4.0/bidux/R/bid_package.R | 1 bidux-0.4.0/bidux/R/bid_quick_suggest.R | 27 bidux-0.4.0/bidux/R/bid_report.R | 93 bidux-0.4.0/bidux/R/bid_structure.R | 77 bidux-0.4.0/bidux/R/bid_validate.R | 90 bidux-0.4.0/bidux/R/data_classes.R | 2 bidux-0.4.0/bidux/R/data_concepts.R | 13 bidux-0.4.0/bidux/R/globals.R | 16 bidux-0.4.0/bidux/R/mappings.R | 51 bidux-0.4.0/bidux/R/s3_classes.R | 294 - bidux-0.4.0/bidux/R/structure_components.R | 9 bidux-0.4.0/bidux/R/structure_suggest.R | 389 -- bidux-0.4.0/bidux/R/suggest_rules.R | 8 bidux-0.4.0/bidux/R/telemetry_analysis.R | 15 bidux-0.4.0/bidux/R/telemetry_ingest.R | 1014 +++++ bidux-0.4.0/bidux/R/telemetry_notices.R | 143 bidux-0.4.0/bidux/R/telemetry_otel_conversion.R |only bidux-0.4.0/bidux/R/telemetry_utils.R | 95 bidux-0.4.0/bidux/R/utils_core.R | 15 bidux-0.4.0/bidux/R/utils_domain.R | 119 bidux-0.4.0/bidux/R/utils_messaging.R | 12 bidux-0.4.0/bidux/R/utils_stage.R | 58 bidux-0.4.0/bidux/R/utils_suggestions.R | 18 bidux-0.4.0/bidux/R/utils_validation.R | 44 bidux-0.4.0/bidux/README.md | 57 bidux-0.4.0/bidux/build/vignette.rds |binary bidux-0.4.0/bidux/inst/WORDLIST | 70 bidux-0.4.0/bidux/inst/doc/advanced-workflows.R | 11 bidux-0.4.0/bidux/inst/doc/advanced-workflows.Rmd | 11 bidux-0.4.0/bidux/inst/doc/advanced-workflows.html | 37 bidux-0.4.0/bidux/inst/doc/api-modernization.R | 118 bidux-0.4.0/bidux/inst/doc/api-modernization.Rmd | 214 - bidux-0.4.0/bidux/inst/doc/api-modernization.html | 744 ++-- bidux-0.4.0/bidux/inst/doc/getting-started.R | 2 bidux-0.4.0/bidux/inst/doc/getting-started.Rmd | 12 bidux-0.4.0/bidux/inst/doc/getting-started.html | 29 bidux-0.4.0/bidux/inst/doc/otel-integration.R |only bidux-0.4.0/bidux/inst/doc/otel-integration.Rmd |only bidux-0.4.0/bidux/inst/doc/otel-integration.html |only bidux-0.4.0/bidux/inst/doc/practical-examples.R | 29 bidux-0.4.0/bidux/inst/doc/practical-examples.Rmd | 29 bidux-0.4.0/bidux/inst/doc/practical-examples.html | 45 bidux-0.4.0/bidux/inst/doc/quick-start.R | 14 bidux-0.4.0/bidux/inst/doc/quick-start.Rmd | 14 bidux-0.4.0/bidux/inst/doc/quick-start.html | 18 bidux-0.4.0/bidux/inst/doc/telemetry-integration.R | 11 bidux-0.4.0/bidux/inst/doc/telemetry-integration.Rmd | 53 bidux-0.4.0/bidux/inst/doc/telemetry-integration.html | 1730 +++++----- bidux-0.4.0/bidux/man/adjust_suggestion_score.Rd | 2 bidux-0.4.0/bidux/man/bid_anticipate.Rd | 2 bidux-0.4.0/bidux/man/bid_ingest_telemetry.Rd | 61 bidux-0.4.0/bidux/man/bid_interpret.Rd | 13 bidux-0.4.0/bidux/man/bid_notice.Rd | 3 bidux-0.4.0/bidux/man/bid_structure.Rd | 38 bidux-0.4.0/bidux/man/bid_suggest_analytics.Rd |only bidux-0.4.0/bidux/man/bid_telemetry.Rd | 32 bidux-0.4.0/bidux/man/bid_telemetry_presets.Rd | 22 bidux-0.4.0/bidux/man/bid_validate.Rd | 2 bidux-0.4.0/bidux/man/bid_with_quiet.Rd | 6 bidux-0.4.0/bidux/man/bidux-package.Rd | 1 bidux-0.4.0/bidux/man/build_concept_group.Rd | 4 bidux-0.4.0/bidux/man/build_groups_with_suggestions.Rd | 4 bidux-0.4.0/bidux/man/calculate_span_duration_ms.Rd |only bidux-0.4.0/bidux/man/check_json_depth.Rd |only bidux-0.4.0/bidux/man/check_otel_available.Rd |only bidux-0.4.0/bidux/man/classify_audience.Rd |only bidux-0.4.0/bidux/man/convert_otel_spans_to_events.Rd |only bidux-0.4.0/bidux/man/create_confusion_notice.Rd | 4 bidux-0.4.0/bidux/man/create_delay_notice.Rd | 4 bidux-0.4.0/bidux/man/create_error_notice.Rd | 4 bidux-0.4.0/bidux/man/create_navigation_notice.Rd | 4 bidux-0.4.0/bidux/man/create_telemetry_notice.Rd |only bidux-0.4.0/bidux/man/create_unused_input_notice.Rd | 4 bidux-0.4.0/bidux/man/detect_otel_json.Rd |only bidux-0.4.0/bidux/man/extract_error_message_from_span.Rd |only bidux-0.4.0/bidux/man/extract_input_id_from_span.Rd |only bidux-0.4.0/bidux/man/extract_navigation_id_from_span.Rd |only bidux-0.4.0/bidux/man/extract_output_id_from_span.Rd |only bidux-0.4.0/bidux/man/extract_session_id_from_span.Rd |only bidux-0.4.0/bidux/man/extract_span_attribute.Rd |only bidux-0.4.0/bidux/man/get_cognitive_load_suggestions.Rd | 2 bidux-0.4.0/bidux/man/get_concept_keywords.Rd |only bidux-0.4.0/bidux/man/get_dual_processing_suggestions.Rd | 2 bidux-0.4.0/bidux/man/get_generic_suggestions.Rd | 2 bidux-0.4.0/bidux/man/get_information_scent_suggestions.Rd | 2 bidux-0.4.0/bidux/man/get_onboarding_suggestions.Rd | 2 bidux-0.4.0/bidux/man/get_progressive_disclosure_suggestions.Rd | 2 bidux-0.4.0/bidux/man/get_proximity_suggestions.Rd | 2 bidux-0.4.0/bidux/man/get_visual_hierarchy_suggestions.Rd | 2 bidux-0.4.0/bidux/man/new_bias_mitigations.Rd | 2 bidux-0.4.0/bidux/man/new_data_story.Rd | 13 bidux-0.4.0/bidux/man/new_user_personas.Rd | 2 bidux-0.4.0/bidux/man/parse_span_timestamp.Rd |only bidux-0.4.0/bidux/man/rank_and_sort_suggestions.Rd | 4 bidux-0.4.0/bidux/man/read_otel_json.Rd |only bidux-0.4.0/bidux/man/read_otel_sqlite.Rd |only bidux-0.4.0/bidux/man/structure_suggestions.Rd | 9 bidux-0.4.0/bidux/tests/testthat/helpers-for-tests.R | 4 bidux-0.4.0/bidux/tests/testthat/helpers-otel.R |only bidux-0.4.0/bidux/tests/testthat/test-bid_anticipate.R | 254 - bidux-0.4.0/bidux/tests/testthat/test-bid_ingest_telemetry.R | 8 bidux-0.4.0/bidux/tests/testthat/test-bid_interpret.R | 94 bidux-0.4.0/bidux/tests/testthat/test-bid_mappings.R | 2 bidux-0.4.0/bidux/tests/testthat/test-bid_quick_suggest.R | 4 bidux-0.4.0/bidux/tests/testthat/test-bid_report.R | 12 bidux-0.4.0/bidux/tests/testthat/test-bid_structure.R | 161 bidux-0.4.0/bidux/tests/testthat/test-bid_suggest_analytics.R |only bidux-0.4.0/bidux/tests/testthat/test-bid_suggest_components.R | 6 bidux-0.4.0/bidux/tests/testthat/test-bid_validate.R | 104 bidux-0.4.0/bidux/tests/testthat/test-bridges.R | 6 bidux-0.4.0/bidux/tests/testthat/test-coverage-strategy.R | 156 bidux-0.4.0/bidux/tests/testthat/test-otel-compatibility.R |only bidux-0.4.0/bidux/tests/testthat/test-otel-conversion.R |only bidux-0.4.0/bidux/tests/testthat/test-otel-ingestion.R |only bidux-0.4.0/bidux/tests/testthat/test-otel_conversion_edge_cases.R |only bidux-0.4.0/bidux/tests/testthat/test-otel_sqlite_coverage.R |only bidux-0.4.0/bidux/tests/testthat/test-performance-context.R |only bidux-0.4.0/bidux/tests/testthat/test-s3_classes.R | 88 bidux-0.4.0/bidux/tests/testthat/test-structure_suggest.R | 103 bidux-0.4.0/bidux/tests/testthat/test-suggest_rules.R | 146 bidux-0.4.0/bidux/tests/testthat/test-telemetry_ingest_edge_cases.R |only bidux-0.4.0/bidux/tests/testthat/test-utils.R | 220 + bidux-0.4.0/bidux/tests/testthat/test-validation-utils.R | 20 bidux-0.4.0/bidux/vignettes/advanced-workflows.Rmd | 11 bidux-0.4.0/bidux/vignettes/api-modernization.Rmd | 214 - bidux-0.4.0/bidux/vignettes/getting-started.Rmd | 12 bidux-0.4.0/bidux/vignettes/otel-integration.Rmd |only bidux-0.4.0/bidux/vignettes/practical-examples.Rmd | 29 bidux-0.4.0/bidux/vignettes/quick-start.Rmd | 14 bidux-0.4.0/bidux/vignettes/telemetry-integration.Rmd | 53 139 files changed, 4486 insertions(+), 3935 deletions(-)
Title: Interactive Visualization of MSE Results
Description: A framework for visualizing and exploring results of a Management
Strategy Evaluation (MSE). The publication quality figures and tables
can be developed directly from the R console, or interactively explored
with the 'Slick' App. For more details, see the 'Slick' website
<https://slick.bluematterscience.com>.
Author: Adrian Hordyk [aut, cre],
Tom Carruthers [aut],
Quang Huynh [aut],
Shana Miller [aut]
Maintainer: Adrian Hordyk <adrian@bluematterscience.com>
Diff between Slick versions 1.0.0 dated 2025-09-11 and 1.0.1 dated 2026-02-27
DESCRIPTION | 28 +- MD5 | 121 ++++++------ NAMESPACE | 4 NEWS.md | 13 + R/a_imports.R | 2 R/aa_generics.R | 67 +++++-- R/class_Boxplot.R | 29 ++- R/class_Check.R | 4 R/class_Kobe.R | 33 ++- R/class_MPs.R | 17 + R/class_Quilt.R | 47 ++++ R/class_Slick.R | 1 R/class_Spider.R | 40 +++- R/class_Timeseries.R | 35 +++ R/class_Tradeoff.R | 34 ++- R/fct_FilterSlick.R | 6 R/fct_Update.R | 13 + R/fct_fix_translations.R |only R/fct_plotBoxplot.R | 9 R/fct_plotKobe.R | 41 ++-- R/fct_plotQuilt.R | 28 ++ R/fct_plotSpider.R | 9 R/fct_plotTimeseries.R | 19 +- R/fct_plotTradeoff.R | 8 R/fct_translator.R | 1 R/man_functions.R | 14 + R/mod_Home.R | 1 R/mod_Spider.R | 3 R/mod_Timeseries.R | 53 +++-- R/mod_Timeseries_byMP.R | 4 R/mod_Timeseries_byOM.R | 3 R/mod_Timeseries_overall.R | 5 R/mod_filter_selection_OM.R | 9 inst/examples/MPs.R | 6 inst/examples/Quilt.R | 42 ++++ inst/translations/translation_fr.csv | 332 +++++++++++++++++------------------ inst/translations/translation_pt.csv |only man/Boxplot-class.Rd | 3 man/Boxplot-methods.Rd | 9 man/Code.Rd | 63 ++++++ man/Factors.Rd | 2 man/Kobe-class.Rd | 3 man/Kobe-methods.Rd | 12 - man/MPs-class.Rd | 7 man/MPs-methods.Rd | 6 man/Metadata.Rd | 2 man/Misc.Rd |only man/Quilt-class.Rd | 49 +++++ man/Quilt-methods.Rd | 55 +++++ man/Slick-class.Rd | 15 - man/Spider-class.Rd | 3 man/Spider-methods.Rd | 12 - man/TimeLab.Rd | 2 man/Timeseries-class.Rd | 3 man/Timeseries-methods.Rd | 28 ++ man/Tradeoff-class.Rd | 3 man/Tradeoff-methods.Rd | 12 - man/plotBoxplot.Rd | 3 man/plotKobe.Rd | 7 man/plotQuilt.Rd | 47 ++++ man/plotSpider.Rd | 3 man/plotTimeseries.Rd | 5 man/plotTradeoff.Rd | 3 63 files changed, 1025 insertions(+), 413 deletions(-)
Title: FDA Adverse Event Reporting System Quarterly Data Extracting
Tool
Description: An easy framework to read FDA Adverse Event Reporting System XML/ASCII files.
Author: Luis Garcez [aut, cre, cph]
Maintainer: Luis Garcez <luisgarcez1@gmail.com>
Diff between faersquarterlydata versions 1.2.0 dated 2024-06-22 and 1.3.0 dated 2026-02-27
faersquarterlydata-1.2.0/faersquarterlydata/tests/testthat/resources/cache/cache_xml.Rdata |only faersquarterlydata-1.3.0/faersquarterlydata/DESCRIPTION | 13 faersquarterlydata-1.3.0/faersquarterlydata/MD5 | 95 faersquarterlydata-1.3.0/faersquarterlydata/NAMESPACE | 44 faersquarterlydata-1.3.0/faersquarterlydata/NEWS.md | 6 faersquarterlydata-1.3.0/faersquarterlydata/R/data.R | 52 faersquarterlydata-1.3.0/faersquarterlydata/R/faersquarterlydata-package.R | 20 faersquarterlydata-1.3.0/faersquarterlydata/R/read_func_ascii.R | 896 faersquarterlydata-1.3.0/faersquarterlydata/R/read_func_xml.R | 850 faersquarterlydata-1.3.0/faersquarterlydata/R/ror.R | 474 faersquarterlydata-1.3.0/faersquarterlydata/R/summary.R | 256 faersquarterlydata-1.3.0/faersquarterlydata/R/unzip.R | 36 faersquarterlydata-1.3.0/faersquarterlydata/README.md | 137 faersquarterlydata-1.3.0/faersquarterlydata/man/als_faers_data.Rd | 40 faersquarterlydata-1.3.0/faersquarterlydata/man/als_faers_data_unified.Rd | 34 faersquarterlydata-1.3.0/faersquarterlydata/man/arrange_date.Rd | 44 faersquarterlydata-1.3.0/faersquarterlydata/man/estimate_chisq.Rd | 52 faersquarterlydata-1.3.0/faersquarterlydata/man/estimate_infoc.Rd | 52 faersquarterlydata-1.3.0/faersquarterlydata/man/estimate_prr.Rd | 56 faersquarterlydata-1.3.0/faersquarterlydata/man/estimate_ror.Rd | 56 faersquarterlydata-1.3.0/faersquarterlydata/man/estimate_ror_bygroup.Rd | 90 faersquarterlydata-1.3.0/faersquarterlydata/man/faersquarterlydata-package.Rd | 30 faersquarterlydata-1.3.0/faersquarterlydata/man/faersxml_to_r.Rd | 34 faersquarterlydata-1.3.0/faersquarterlydata/man/get_duplicate_caseids.Rd | 34 faersquarterlydata-1.3.0/faersquarterlydata/man/products_fda.Rd | 38 faersquarterlydata-1.3.0/faersquarterlydata/man/retrieve_faersascii.Rd | 68 faersquarterlydata-1.3.0/faersquarterlydata/man/retrieve_faersxml.Rd | 56 faersquarterlydata-1.3.0/faersquarterlydata/man/retrieve_faersxml_all.Rd | 42 faersquarterlydata-1.3.0/faersquarterlydata/man/retrieve_unique_info.Rd | 38 faersquarterlydata-1.3.0/faersquarterlydata/man/summary_faersdata.Rd | 40 faersquarterlydata-1.3.0/faersquarterlydata/man/unify_tabular_ascii.Rd | 44 faersquarterlydata-1.3.0/faersquarterlydata/man/unzip_faerszip.Rd | 38 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat.R | 24 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/resources/1_ADR22Q1_example.xml | 1314 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/resources/deleted/DELETE21Q4.txt |15968 +++++----- faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt | 283 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt | 2 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt | 231 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/resources/test_zip_ex_dir/ASCII/INDI22Q4.txt | 667 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt | 2412 - faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/resources/test_zip_ex_dir/ASCII/REAC22Q4.txt | 1091 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt | 448 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/resources/test_zip_ex_dir/ASCII/THER22Q4.txt | 551 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/resources/test_zip_ex_dir/Deleted/DELETE22Q4.txt | 7250 ++-- faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/test-read_func_ascii.R | 108 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/test-read_func_xml.R | 50 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/test-ror.R | 114 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/test-summary.R | 12 faersquarterlydata-1.3.0/faersquarterlydata/tests/testthat/test-unzip.R | 14 49 files changed, 15847 insertions(+), 18457 deletions(-)
More information about faersquarterlydata at CRAN
Permanent link
Title: Panel Smooth Transition Regression Modelling
Description: Implements the Panel Smooth Transition Regression (PSTR) framework for nonlinear panel data modelling.
The modelling procedure consists of three stages: Specification, Estimation and Evaluation.
The package provides tools for model specification testing,
to do PSTR model estimation, and to do model evaluation.
The implemented tests allow for cluster dependence and are heteroskedasticity-consistent.
The wild bootstrap and wild cluster bootstrap tests are also implemented.
Parallel computation (as an option) is implemented in some functions, especially the bootstrap tests.
The package supports parallel computation, which is useful for large-scale bootstrap procedures.
Author: Yukai Yang [aut, cre]
Maintainer: Yukai Yang <yukai.yang@statistik.uu.se>
This is a re-admission after prior archival of version 1.2.4 dated 2019-06-03
Diff between PSTR versions 1.2.4 dated 2019-06-03 and 2.0.0 dated 2026-02-27
PSTR-1.2.4/PSTR/man/PSTR.Rd |only PSTR-2.0.0/PSTR/DESCRIPTION | 25 PSTR-2.0.0/PSTR/MD5 | 57 PSTR-2.0.0/PSTR/NAMESPACE | 14 PSTR-2.0.0/PSTR/NEWS.md | 142 +- PSTR-2.0.0/PSTR/R/PSTR.R | 222 ++- PSTR-2.0.0/PSTR/R/data.R | 4 PSTR-2.0.0/PSTR/R/estimation.R | 468 ++++---- PSTR-2.0.0/PSTR/R/evaluation.R | 572 ++++++--- PSTR-2.0.0/PSTR/R/specification.R | 430 ++++--- PSTR-2.0.0/PSTR/R/utils.R | 1612 ++++++++++++++++++---------- PSTR-2.0.0/PSTR/README.md | 544 +++++---- PSTR-2.0.0/PSTR/build/vignette.rds |binary PSTR-2.0.0/PSTR/inst/CITATION |only PSTR-2.0.0/PSTR/inst/doc/pstr-vignette.R | 153 +- PSTR-2.0.0/PSTR/inst/doc/pstr-vignette.Rmd | 144 +- PSTR-2.0.0/PSTR/inst/doc/pstr-vignette.html | 790 ++++++++----- PSTR-2.0.0/PSTR/man/EstPSTR.Rd | 142 +- PSTR-2.0.0/PSTR/man/EvalTest.Rd | 135 +- PSTR-2.0.0/PSTR/man/Hansen99.Rd | 8 PSTR-2.0.0/PSTR/man/LinTest.Rd | 117 +- PSTR-2.0.0/PSTR/man/NewPSTR.Rd | 73 - PSTR-2.0.0/PSTR/man/PSTR-package.Rd |only PSTR-2.0.0/PSTR/man/plot_coefficients.Rd | 65 - PSTR-2.0.0/PSTR/man/plot_response.Rd | 90 - PSTR-2.0.0/PSTR/man/plot_target.Rd | 111 + PSTR-2.0.0/PSTR/man/plot_transition.Rd | 70 - PSTR-2.0.0/PSTR/man/print.PSTR.Rd | 73 - PSTR-2.0.0/PSTR/man/sunspot.Rd | 8 PSTR-2.0.0/PSTR/tests |only PSTR-2.0.0/PSTR/vignettes/pstr-vignette.Rmd | 144 +- 31 files changed, 3788 insertions(+), 2425 deletions(-)
Title: Predict with 'tidymodels' Workflows in Databases
Description: Turn 'tidymodels' workflows into objects containing the
sufficient sequential equations to perform predictions. These smaller
objects allow for low dependency prediction locally or directly in
databases.
Author: Emil Hvitfeldt [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between orbital versions 0.4.1 dated 2025-12-13 and 0.5.0 dated 2026-02-27
DESCRIPTION | 14 - MD5 | 129 ++++++++------ NAMESPACE | 13 + NEWS.md | 36 +++ R/adjust_equivocal_zone.R | 6 R/adjust_numeric_range.R | 7 R/adjust_probability_threshold.R | 5 R/classification-helpers.R |only R/json.R | 2 R/model-catboost.R |only R/model-earth.R |only R/model-glm.R | 30 --- R/model-glmnet.R |only R/model-lightgbm.R |only R/model-partykit.R | 2 R/model-randomForest.R |only R/model-ranger.R |only R/model-rpart.R |only R/model-xgboost.R | 189 +++++++++++++------- R/orbital.R | 13 + R/parsnip.R | 42 ++++ R/recipes-utils.R | 168 +++++++++++++++++- R/step_YeoJohnson.R |only R/step_boxcox.R | 4 R/step_center.R | 2 R/step_discretize.R | 11 - R/step_impute_mean.R | 2 R/step_impute_median.R | 2 R/step_intercept.R | 2 R/step_inverse.R | 2 R/step_lag.R | 3 R/step_log.R | 4 R/step_normalize.R | 4 R/step_range.R | 6 R/step_scale.R | 2 R/step_spline_b.R |only R/step_spline_convex.R |only R/step_spline_monotone.R |only R/step_spline_natural.R |only R/step_spline_nonnegative.R |only R/utils.R | 30 +++ R/workflows.R | 15 + README.md | 6 build/vignette.rds |binary inst/doc/separate-trees.R |only inst/doc/separate-trees.Rmd |only inst/doc/separate-trees.html |only inst/doc/supported-models.R | 14 - inst/doc/supported-models.Rmd | 19 +- inst/doc/supported-models.html | 158 +++++++++-------- man/orbital.Rd | 8 tests/testthat/_snaps/model-glm.md |only tests/testthat/_snaps/orbital.md | 40 ++-- tests/testthat/_snaps/sql.md | 94 ++++++++++ tests/testthat/derby.log | 6 tests/testthat/helper-context.R | 56 ++++-- tests/testthat/helper-initialize.R | 19 +- tests/testthat/helper-utils.R | 4 tests/testthat/test-augment.R | 4 tests/testthat/test-classification-helpers.R |only tests/testthat/test-json.R | 109 +++++++++++ tests/testthat/test-model-catboost.R |only tests/testthat/test-model-earth.R |only tests/testthat/test-model-glm.R | 140 +++++++++++++-- tests/testthat/test-model-glmnet.R |only tests/testthat/test-model-lightgbm.R |only tests/testthat/test-model-partykit.R | 79 ++++++-- tests/testthat/test-model-randomForest.R |only tests/testthat/test-model-ranger.R |only tests/testthat/test-model-rpart.R |only tests/testthat/test-model-xgboost.R | 239 +++++++++++++++++++++++++- tests/testthat/test-orbital.R | 16 + tests/testthat/test-spline-helper.R |only tests/testthat/test-sql.R | 114 ++++++++++++ tests/testthat/test-step_YeoJohnson.R |only tests/testthat/test-step_spline_b.R |only tests/testthat/test-step_spline_convex.R |only tests/testthat/test-step_spline_monotone.R |only tests/testthat/test-step_spline_natural.R |only tests/testthat/test-step_spline_nonnegative.R |only tests/testthat/test-utils.R |only vignettes/separate-trees.Rmd |only vignettes/supported-models.Rmd | 19 +- 83 files changed, 1533 insertions(+), 356 deletions(-)
More information about astronomyengine at CRAN
Permanent link
Title: Global Sensitivity Analysis of Model Outputs and Importance
Measures
Description: A collection of functions for sensitivity analysis of model outputs (factor screening, global sensitivity analysis and robustness analysis), for variable importance measures of data, as well as for interpretability of machine learning models. Most of the functions have to be applied on scalar output, but several functions support multi-dimensional outputs.
Author: Bertrand Iooss [aut, cre],
Sebastien Da Veiga [aut],
Alexandre Janon [aut],
Gilles Pujol [aut]
Maintainer: Bertrand Iooss <biooss@yahoo.fr>
Diff between sensitivity versions 1.30.2 dated 2025-09-18 and 1.31.0 dated 2026-02-27
DESCRIPTION | 8 ++++---- MD5 | 30 ++++++++++++++++-------------- NAMESPACE | 39 +++++++++++++++++++++------------------ NEWS | 15 +++++++++++---- R/VIM.R |only R/lmg.R | 2 +- R/pmvd.R | 2 +- R/testmodels.R | 17 +++++++++++++++++ man/VIM.Rd |only man/correlRatio.Rd | 3 ++- man/johnson.Rd | 3 ++- man/lmg.Rd | 3 ++- man/pcc.Rd | 7 +++++-- man/pmvd.Rd | 3 ++- man/sensitivity-package.Rd | 7 ++++--- man/src.Rd | 5 ++++- man/testmodels.Rd | 5 +++-- 17 files changed, 95 insertions(+), 54 deletions(-)
Title: Functions from "Reinsurance: Actuarial and Statistical Aspects"
Description: Functions from the book "Reinsurance: Actuarial and Statistical Aspects" (2017) by Hansjoerg Albrecher, Jan Beirlant and Jef Teugels <https://www.wiley.com/en-us/Reinsurance%3A+Actuarial+and+Statistical+Aspects-p-9780470772683>.
Author: Tom Reynkens [aut, cre] ,
Roel Verbelen [aut] ,
Anastasios Bardoutsos [ctb] ,
Dries Cornilly [ctb] ,
Yuri Goegebeur [ctb] ,
Klaus Herrmann [ctb]
Maintainer: Tom Reynkens <tomreynkens.r@gmail.com>
Diff between ReIns versions 1.0.15 dated 2024-12-02 and 1.0.16 dated 2026-02-27
DESCRIPTION | 13 +- MD5 | 10 - build/vignette.rds |binary inst/NEWS.Rd | 7 + inst/doc/ReIns.html | 313 ++++++++++++++++++++++++++-------------------------- src/STDF.cpp | 4 6 files changed, 179 insertions(+), 168 deletions(-)
Title: Tools for Managing Imaging FlowCytobot (IFCB) Data
Description: A comprehensive suite of tools for managing, processing, and
analyzing data from the IFCB. I R FlowCytobot ('iRfcb') supports
quality control, geospatial analysis, and preparation of IFCB data for
publication in databases like <https://www.gbif.org>,
<https://www.obis.org>, <https://emodnet.ec.europa.eu/en>,
<https://shark.smhi.se/en/>, and <https://www.ecotaxa.org>. The package
integrates with the MATLAB 'ifcb-analysis' tool, which is described in
Sosik and Olson (2007) <doi:10.4319/lom.2007.5.204>, and provides
features for working with raw, manually classified, and machine
learning–classified image datasets. Key functionalities include image
extraction, particle size distribution analysis, taxonomic data
handling, and biomass concentration calculations, essential for
plankton research.
Author: Anders Torstensson [aut, cre] ,
Kendra Hayashi [ctb] ,
Jamie Enslein [ctb],
Raphael Kudela [ctb] ,
Alle Lie [ctb] ,
Jayme Smith [ctb] ,
DTO-BioFlow [fnd] ,
SBDI [fnd]
Maintainer: Anders Torstensson <anders.torstensson@smhi.se>
Diff between iRfcb versions 0.7.0 dated 2026-01-07 and 0.8.0 dated 2026-02-27
DESCRIPTION | 10 MD5 | 156 +++++----- NAMESPACE | 4 NEWS.md | 30 ++ R/ifcb_annotate_batch.R | 4 R/ifcb_annotate_samples.R | 14 R/ifcb_classify_images.R |only R/ifcb_classify_models.R |only R/ifcb_classify_sample.R |only R/ifcb_correct_annotation.R | 5 R/ifcb_count_mat_annotations.R | 3 R/ifcb_create_manifest.R | 5 R/ifcb_create_manual_file.R | 4 R/ifcb_download_dashboard_metadata.R | 2 R/ifcb_download_test_data.R | 6 R/ifcb_download_whoi_plankton.R | 2 R/ifcb_extract_annotated_images.R | 21 + R/ifcb_extract_biovolumes.R | 140 +++++---- R/ifcb_extract_classified_images.R | 44 ++- R/ifcb_extract_pngs.R | 74 +++-- R/ifcb_get_ferrybox_data.R | 1 R/ifcb_get_trophic_type.R | 2 R/ifcb_helper_functions.R | 207 +++++++++++++- R/ifcb_is_diatom.R | 2 R/ifcb_is_near_land.R | 8 R/ifcb_match_taxa_names.R | 8 R/ifcb_merge_manual.R | 2 R/ifcb_psd.R | 12 R/ifcb_read_hdr_data.R | 10 R/ifcb_run_image_gallery.R | 13 R/ifcb_save_classification.R |only R/ifcb_summarize_biovolumes.R | 90 +++--- R/ifcb_summarize_class_counts.R | 17 - R/ifcb_volume_analyzed.R | 2 R/ifcb_volume_analyzed_from_adc.R | 25 + R/ifcb_zip_matlab.R | 18 - R/ifcb_zip_pngs.R | 10 README.md | 7 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/WORDLIST | 5 inst/doc/introduction.R | 55 +++ inst/doc/introduction.Rmd | 85 +++++ inst/doc/introduction.html | 299 +++++++++++++-------- inst/python/create_manual_mat.py | 2 inst/python/save_class_mat.py |only man/ifcb_annotate_batch.Rd | 4 man/ifcb_classify_images.Rd |only man/ifcb_classify_models.Rd |only man/ifcb_classify_sample.Rd |only man/ifcb_correct_annotation.Rd | 3 man/ifcb_create_manual_file.Rd | 4 man/ifcb_download_test_data.Rd | 4 man/ifcb_extract_annotated_images.Rd | 13 man/ifcb_extract_biovolumes.Rd | 58 ++-- man/ifcb_extract_classified_images.Rd | 19 - man/ifcb_extract_pngs.Rd | 9 man/ifcb_is_near_land.Rd | 6 man/ifcb_match_taxa_names.Rd | 6 man/ifcb_merge_manual.Rd | 2 man/ifcb_psd.Rd | 10 man/ifcb_read_hdr_data.Rd | 6 man/ifcb_run_image_gallery.Rd | 8 man/ifcb_save_classification.Rd |only man/ifcb_summarize_biovolumes.Rd | 51 ++- man/ifcb_volume_analyzed.Rd | 2 man/read_hdr_file.Rd | 2 man/summarize_TBclass.Rd | 10 tests/testthat/helper.R | 51 ++- tests/testthat/test-ifcb_classify_images.R |only tests/testthat/test-ifcb_classify_models.R |only tests/testthat/test-ifcb_classify_sample.R |only tests/testthat/test-ifcb_create_manifest.R | 8 tests/testthat/test-ifcb_download_dashboard_data.R | 1 tests/testthat/test-ifcb_extract_biovolumes.R | 4 tests/testthat/test-ifcb_extract_pngs.R | 20 + tests/testthat/test-ifcb_get_runtime.R | 12 tests/testthat/test-ifcb_is_diatom.R | 2 tests/testthat/test-ifcb_read_hdr_data.R | 4 tests/testthat/test-ifcb_run_image_gallery.R | 4 tests/testthat/test-ifcb_save_classification.R |only tests/testthat/test-ifcb_summarize_biovolumes.R | 2 tests/testthat/test-read_class_file.R |only tests/testthat/test_data/test_data.zip |binary vignettes/introduction.Rmd | 85 +++++ 86 files changed, 1262 insertions(+), 556 deletions(-)
Title: Geometric Markov Chain Sampling
Description: Simulates from discrete and continuous target distributions using geometric
Metropolis-Hastings (MH) algorithms. Users specify the target distribution by an R
function that evaluates the log un-normalized pdf or pmf. The package also contains a
function implementing a specific geometric MH algorithm for performing high-dimensional
Bayesian variable selection.
Author: Vivekananda Roy [aut, cre]
Maintainer: Vivekananda Roy <vroy@iastate.edu>
Diff between geommc versions 0.1.1 dated 2024-10-18 and 1.3.1 dated 2026-02-27
DESCRIPTION | 30 - MD5 | 42 +- NAMESPACE | 48 +- R/RcppExports.R | 67 ++- R/auxifns.R | 621 ++++++++++++++++++++--------- R/auxifns_vs.R | 786 ++++++++++++++++++++----------------- R/cal.lop.vs.R | 187 +++++--- R/geomc.R | 1029 +++++++++++++++++++++++++++++++++---------------- R/geomcvs.R | 552 +++++++++++++++----------- R/geommc-package.R |only build |only inst |only man/geomc.Rd | 349 ++++++++++------ man/geomc.vs.Rd | 301 +++++++------- man/geommc-package.Rd |only man/logp.vs.Rd | 103 ++-- src/Makevars |only src/Makevars.win |only src/RcppExports.cpp | 112 +++++ src/armanormauxfns.cpp |only src/logp_vs_in.cpp |only src/rw_mc.cpp |only vignettes |only 23 files changed, 2656 insertions(+), 1571 deletions(-)
Title: Handling Single-Level and Hierarchically Structured Risk Factors
using Credibility and Random Effects Models
Description: Fits random effects models for multi-level/high-cardinality factors using credibility theory (Buhlmann-Straub for single-level, Jewell for hierarchical structures), GLM extensions following Ohlsson (2008) <doi:10.1080/03461230701878612>, or Tweedie generalized linear mixed models. Provides functions for model fitting, visualization, and prediction. See Campo, B.D.C. and Antonio, K. (2023) <doi:10.1080/03461238.2022.2161413>.
Author: Campo Bavo D.C. [aut, cre]
Maintainer: Campo Bavo D.C. <bavo.decock@kuleuven.be>
Diff between actuaRE versions 0.1.7 dated 2025-12-02 and 1.0.0 dated 2026-02-27
DESCRIPTION | 21 MD5 | 58 - NAMESPACE | 22 R/BuhlmannStraubModel.R |only R/GLMC.R |only R/helperFunctions.R | 87 +- R/hierCredGLM.R | 41 R/hierCredibility.R | 3 R/plotRE.R | 120 +- R/predict.R | 73 + R/printFunctions.R | 247 +++++ R/tweedieGLMM.R | 161 ++- README.md | 10 build/partial.rdb |binary inst/CITATION | 8 inst/doc/actuaRE.R | 66 + inst/doc/actuaRE.Rmd | 216 ++++- inst/doc/actuaRE.html | 1545 ++++++++++++++++++++----------------- man/actuaRE.Rd | 3 man/buhlmannStraub-class.Rd |only man/buhlmannStraub.Rd |only man/buhlmannStraubGLM-class.Rd |only man/buhlmannStraubGLM.Rd |only man/buhlmannStraubTweedie-class.Rd |only man/buhlmannStraubTweedie.Rd |only man/fixef-actuaRE.Rd | 66 - man/hierCredGLM.Rd | 4 man/hierCredTweedie.Rd | 14 man/hierCredibility.Rd | 3 man/plotRE.Rd | 74 - man/ranef-actuaRE.Rd | 63 - man/tweedieGLMM.Rd | 119 +- man/weights-actuaRE.Rd | 6 vignettes/actuaRE.Rmd | 216 ++++- 34 files changed, 2140 insertions(+), 1106 deletions(-)
Title: Election Vote Counting
Description: Counting election votes and determining election results by different methods, including
the single transferable vote or ranked choice, approval, score, plurality, condorcet and two-round
runoff methods (Raftery et al., 2021 <doi:10.32614/RJ-2021-086>).
Author: Hana Sevcikova [aut, cre],
Bernard Silverman [aut],
Adrian Raftery [aut]
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between vote versions 2.4-4 dated 2025-03-02 and 2.5-2 dated 2026-02-27
ChangeLog | 11 +++++++++++ DESCRIPTION | 10 +++++----- MD5 | 33 ++++++++++++++++++--------------- NAMESPACE | 4 +++- R/check_votes.R | 21 +++++++++++++++++++-- R/condorcet.R | 18 +++++++++++------- R/stv.R | 38 ++++++++++++++++++++++++++++++++------ R/two_round_runoff.R | 16 +++++++++------- R/vote_by_sum.R | 34 +++++++++++++++++++++------------- R/vote_class.R |only man/approval.Rd | 27 ++++++++++++++++++++------- man/condorcet.Rd | 16 +++++++++++----- man/count.votes.Rd | 7 +++++-- man/score.Rd | 13 +++++++++---- man/stv.Rd | 26 +++++++++++++++++--------- man/two_round_runoff.Rd | 12 +++++++----- man/vote-package.Rd | 2 +- tests |only 18 files changed, 199 insertions(+), 89 deletions(-)
Title: Machine Learning in R - Next Generation
Description: Efficient, object-oriented programming on the
building blocks of machine learning. Provides 'R6' objects for tasks,
learners, resamplings, and measures. The package is geared towards
scalability and larger datasets by supporting parallelization and
out-of-memory data-backends like databases. While 'mlr3' focuses on
the core computational operations, add-on packages provide additional
functionality.
Author: Michel Lang [aut] ,
Bernd Bischl [aut] ,
Jakob Richter [aut] ,
Patrick Schratz [aut] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [aut],
Florian Pfisterer [aut] ,
Raphael Sonabend [aut] ,
Lennart Schneider [ctb] , [...truncated...]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3 versions 1.4.0 dated 2026-02-19 and 1.5.0 dated 2026-02-27
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NAMESPACE | 2 ++ NEWS.md | 4 ++++ R/Learner.R | 14 +++++++------- R/ResultData.R | 2 +- R/helper.R | 11 +++++++++++ R/worker.R | 30 ++++++++++++------------------ inst/testthat/helper_autotest.R | 3 ++- man/Learner.Rd | 10 +++++----- tests/testthat/test_Learner.R | 2 +- tests/testthat/test_autotest.R | 36 ++++++++++++++++++------------------ tests/testthat/test_encapsulate.R | 10 ++++++---- tests/testthat/test_errorhandling.R | 24 ++++++++++++------------ 14 files changed, 98 insertions(+), 84 deletions(-)
Title: Causal Generalized Linear Models
Description: An implementation of methods for causal discovery in a structural causal model where the conditional distribution of the target node is described by a generalized linear model conditional on its causal parents.
Author: Veronica Vinciotti [aut, cre],
Ernst C. Wit [aut]
Maintainer: Veronica Vinciotti <veronica.vinciotti@unitn.it>
Diff between causalreg versions 0.1.0 dated 2025-03-12 and 0.1.1 dated 2026-02-27
DESCRIPTION | 8 - MD5 | 22 +-- NAMESPACE | 1 R/boot_pval.R | 47 ++----- R/cgam.R | 157 +++++++++++------------ R/cgam_all.R | 189 +++++++++++++++++----------- R/cgam_step.R | 387 ++++++++++++++++++++++++++++++++++------------------------ R/cglm.R | 149 +++++++++++----------- R/cglm_all.R | 160 ++++++++++++++--------- R/cglm_step.R | 314 +++++++++++++++++++++++++++-------------------- man/cgam.Rd | 29 ++-- man/cglm.Rd | 31 ++-- 12 files changed, 847 insertions(+), 647 deletions(-)
Title: A DNA Reference Library Manager
Description: Reference database manager offering a set of functions
to import, organize, clean, filter, audit and export reference genetic
data. Provide functions to download sequence data from
NCBI GenBank <https://www.ncbi.nlm.nih.gov/genbank/>.
Designed as an environment for semi-automatic and assisted
construction of reference databases and to improve standardization
and repeatability in barcoding and metabarcoding studies.
Author: Francois Keck [aut, cre, cph]
Maintainer: Francois Keck <francois.keck@gmail.com>
This is a re-admission after prior archival of version 0.1.2 dated 2025-12-19
Diff between refdb versions 0.1.2 dated 2025-12-19 and 0.1.3 dated 2026-02-27
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/doc/intro_refdb.html | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Methods for Analysing 'EQ-5D' Data and Calculating 'EQ-5D' Index
Scores
Description: EQ-5D is a popular health related quality of life instrument used
in the clinical and economic evaluation of health care. Developed by the
EuroQol group <https://euroqol.org/>, the instrument consists of two
components: health state description and evaluation. For the description
component a subject self-rates their health in terms of five dimensions;
mobility, self-care, usual activities, pain/discomfort, and
anxiety/depression using either a three-level (EQ-5D-3L,
<https://euroqol.org/information-and-support/euroqol-instruments/eq-5d-3l/>) or a five-level
(EQ-5D-5L, <https://euroqol.org/information-and-support/euroqol-instruments/eq-5d-5l/>)
scale. Frequently the scores on these five dimensions are converted to a
single utility index using country specific value sets, which can be used
in the clinical and economic evaluation of health care as well as in
population health surveys. The eq5d package provides methods to calculate
index scores from a subject's dimension [...truncated...]
Author: Fraser Morton [aut, cre],
Jagtar Singh Nijjar [aut]
Maintainer: Fraser Morton <fraser.morton@glasgow.ac.uk>
Diff between eq5d versions 0.16.1 dated 2025-09-10 and 0.16.2 dated 2026-02-27
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NEWS.md | 7 +++++++ R/data.R | 12 +++++++----- R/sysdata.rda |binary inst/doc/eq5d.html | 6 +++--- man/TTO.Rd | 11 ++++++----- man/Y3L.Rd | 5 +++-- man/eq5d-package.Rd | 2 +- tests/testthat/test-eq5d3l.R | 19 +++++++++++++------ tests/testthat/test-eq5dy3l.R | 7 +++++++ 11 files changed, 62 insertions(+), 37 deletions(-)
Title: Cytokine Profiling Analysis Tool
Description: Provides comprehensive cytokine profiling analysis through quality control using biologically meaningful cutoffs on raw cytokine measurements and by testing for distributional symmetry to recommend appropriate transformations. Offers exploratory data analysis with summary statistics, enhanced boxplots, and barplots, along with univariate and multivariate analytical capabilities for in-depth cytokine profiling such as Principal Component Analysis based on Andrzej Maćkiewicz and Waldemar Ratajczak (1993) <doi:10.1016/0098-3004(93)90090-R>, Sparse Partial Least Squares Discriminant Analysis based on Lê Cao K-A, Boitard S, and Besse P (2011) <doi:10.1186/1471-2105-12-253>, Random Forest based on Breiman, L. (2001) <doi:10.1023/A:1010933404324>, and Extreme Gradient Boosting based on Tianqi Chen and Carlos Guestrin (2016) <doi:10.1145/2939672.2939785>.
Author: Shubh Saraswat [cre, aut, cph] ,
Xiaohua Douglas Zhang [aut]
Maintainer: Shubh Saraswat <shubh.saraswat00@gmail.com>
Diff between CytoProfile versions 0.2.3 dated 2025-12-06 and 0.2.4 dated 2026-02-27
CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA1-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA1-2.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA2-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA2-2.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA2-3.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA2-4.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA3-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA3-2.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA4-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA5-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA6-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA7-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-EDA8-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-ML1-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-ML1-2.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-ML2-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-ML2-2.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-ML2-3.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-10.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-11.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-12.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-2.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-3.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-4.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-5.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-6.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-7.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-8.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate1-9.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate2-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate2-2.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate2-3.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate2-4.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate2-5.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate2-6.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate2-7.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate2-8.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate2-9.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate3-1.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate3-2.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate3-3.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate3-4.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate3-5.png |only CytoProfile-0.2.3/CytoProfile/man/figures/readme-Multivariate3-6.png |only CytoProfile-0.2.4/CytoProfile/DESCRIPTION | 12 CytoProfile-0.2.4/CytoProfile/MD5 | 154 CytoProfile-0.2.4/CytoProfile/NAMESPACE | 184 CytoProfile-0.2.4/CytoProfile/NEWS.md | 262 CytoProfile-0.2.4/CytoProfile/R/cyt_anova.R | 219 CytoProfile-0.2.4/CytoProfile/R/cyt_bp.R | 316 CytoProfile-0.2.4/CytoProfile/R/cyt_bp2.R | 219 CytoProfile-0.2.4/CytoProfile/R/cyt_dualflashplot.R | 338 - CytoProfile-0.2.4/CytoProfile/R/cyt_errbp.R | 803 +- CytoProfile-0.2.4/CytoProfile/R/cyt_export.R |only CytoProfile-0.2.4/CytoProfile/R/cyt_heatmap.R | 399 - CytoProfile-0.2.4/CytoProfile/R/cyt_mint_splsda.R | 438 - CytoProfile-0.2.4/CytoProfile/R/cyt_pca.R | 1176 +-- CytoProfile-0.2.4/CytoProfile/R/cyt_rf.R | 736 +- CytoProfile-0.2.4/CytoProfile/R/cyt_skku.R | 468 - CytoProfile-0.2.4/CytoProfile/R/cyt_splsda.R | 3338 +++++----- CytoProfile-0.2.4/CytoProfile/R/cyt_ttest.R | 349 - CytoProfile-0.2.4/CytoProfile/R/cyt_univiariate.R |only CytoProfile-0.2.4/CytoProfile/R/cyt_univiariate_multi.R |only CytoProfile-0.2.4/CytoProfile/R/cyt_violin.R |only CytoProfile-0.2.4/CytoProfile/R/cyt_volc.R | 397 - CytoProfile-0.2.4/CytoProfile/R/cyt_xgb.R | 772 +- CytoProfile-0.2.4/CytoProfile/R/data.R | 440 - CytoProfile-0.2.4/CytoProfile/R/global_variables.R | 51 CytoProfile-0.2.4/CytoProfile/R/utils.R |only CytoProfile-0.2.4/CytoProfile/README.md | 434 - CytoProfile-0.2.4/CytoProfile/data/ExampleData1.rda |binary CytoProfile-0.2.4/CytoProfile/data/ExampleData2.rda |binary CytoProfile-0.2.4/CytoProfile/data/ExampleData3.rda |binary CytoProfile-0.2.4/CytoProfile/data/ExampleData4.rda |binary CytoProfile-0.2.4/CytoProfile/data/ExampleData5.rda |binary CytoProfile-0.2.4/CytoProfile/inst/WORDLIST | 31 CytoProfile-0.2.4/CytoProfile/inst/doc/getting_started.R | 420 - CytoProfile-0.2.4/CytoProfile/inst/doc/getting_started.Rmd | 954 ++ CytoProfile-0.2.4/CytoProfile/inst/doc/getting_started.html | 1906 ++++- CytoProfile-0.2.4/CytoProfile/man/ExampleData1.Rd | 120 CytoProfile-0.2.4/CytoProfile/man/ExampleData2.Rd | 102 CytoProfile-0.2.4/CytoProfile/man/ExampleData3.Rd | 90 CytoProfile-0.2.4/CytoProfile/man/ExampleData4.Rd | 106 CytoProfile-0.2.4/CytoProfile/man/ExampleData5.Rd | 132 CytoProfile-0.2.4/CytoProfile/man/adjust_p.Rd |only CytoProfile-0.2.4/CytoProfile/man/apply_scale.Rd |only CytoProfile-0.2.4/CytoProfile/man/cyt_anova.Rd | 78 CytoProfile-0.2.4/CytoProfile/man/cyt_bp.Rd | 108 CytoProfile-0.2.4/CytoProfile/man/cyt_bp2.Rd | 88 CytoProfile-0.2.4/CytoProfile/man/cyt_dualflashplot.Rd | 164 CytoProfile-0.2.4/CytoProfile/man/cyt_errbp.Rd | 205 CytoProfile-0.2.4/CytoProfile/man/cyt_export.Rd |only CytoProfile-0.2.4/CytoProfile/man/cyt_heatmap.Rd | 152 CytoProfile-0.2.4/CytoProfile/man/cyt_mint_splsda.Rd | 215 CytoProfile-0.2.4/CytoProfile/man/cyt_pca.Rd | 201 CytoProfile-0.2.4/CytoProfile/man/cyt_rf.Rd | 223 CytoProfile-0.2.4/CytoProfile/man/cyt_skku.Rd | 14 CytoProfile-0.2.4/CytoProfile/man/cyt_splsda.Rd | 306 CytoProfile-0.2.4/CytoProfile/man/cyt_ttest.Rd | 98 CytoProfile-0.2.4/CytoProfile/man/cyt_univariate.Rd |only CytoProfile-0.2.4/CytoProfile/man/cyt_univariate_multi.Rd |only CytoProfile-0.2.4/CytoProfile/man/cyt_violin.Rd |only CytoProfile-0.2.4/CytoProfile/man/cyt_volc.Rd | 156 CytoProfile-0.2.4/CytoProfile/man/cyt_xgb.Rd | 295 CytoProfile-0.2.4/CytoProfile/vignettes/getting_started.Rmd | 954 ++ 106 files changed, 10795 insertions(+), 7828 deletions(-)
Title: Analysis of Basketball Data
Description: Collection of tools to work with European basketball data. Functions available are related to friendly
web scraping, data management and visualization. Data were obtained from <https://www.euroleaguebasketball.net/euroleague/>,
<https://www.euroleaguebasketball.net/eurocup/> and <https://www.acb.com/>, following the instructions
of their respectives robots.txt files, when available. Box score data are available for the three leagues.
Play-by-play and spatial shooting data are also available for the Spanish league. Methods for analysis include a
population pyramid, 2D plots, circular plots of players' percentiles, plots of players' monthly/yearly stats,
team heatmaps, team shooting plots, team four factors plots, cross-tables with the results of regular season games,
maps of nationalities, combinations of lineups, possessions-related variables, timeouts,
performance by periods, personal fouls, offensive rebounds and different types of shooting charts.
Please see Vinue [...truncated...]
Author: Guillermo Vinue [aut, cre]
Maintainer: Guillermo Vinue <guillermo.vinue@uv.es>
Diff between BAwiR versions 1.4.4 dated 2026-02-05 and 1.5 dated 2026-02-27
DESCRIPTION | 8 - MD5 | 58 ++++--- NAMESPACE | 17 ++ NEWS | 15 +- R/do_four_factors_df.R | 17 +- R/do_four_factors_df_lineup.R |only R/do_lineup.R | 7 R/do_lineup_metrics.R |only R/do_possession.R | 278 ++++++++++++++++++++++++-------------- R/do_possession_stats.R | 23 ++- R/do_possession_stats_lineup.R |only R/do_study_lineup.R |only R/do_sub_lineup.R | 33 ++-- R/do_usage.R | 260 +++++++++++++++++++++++------------ R/get_net_rtg_on_off.R |only data/acb_combs.RData |only inst/doc/BAwiR.html | 4 inst/doc/BAwiR_pbp.R | 2 inst/doc/BAwiR_pbp.Rmd | 2 inst/doc/BAwiR_pbp.html | 6 inst/doc/BAwiR_sc.Rmd | 2 inst/doc/BAwiR_sc.html | 8 - man/acb_combs.Rd |only man/do_four_factors_df.Rd | 11 - man/do_four_factors_df_lineup.Rd |only man/do_lineup.Rd | 7 man/do_lineup_metrics.Rd |only man/do_possession.Rd | 80 +++++++++- man/do_possession_stats.Rd | 23 ++- man/do_possession_stats_lineup.Rd |only man/do_study_lineup.Rd |only man/do_sub_lineup.Rd | 20 +- man/do_usage.Rd | 86 +++++++++-- man/get_net_rtg_on_off.Rd |only vignettes/BAwiR_pbp.Rmd | 2 vignettes/BAwiR_sc.Rmd | 2 36 files changed, 665 insertions(+), 306 deletions(-)
Title: Rare Variant Analysis and Genetic Simulations
Description: Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>) in the whole genome using the RAVA-FIRST approach (Bocher et al. 2022 <doi:10.1371/journal.pgen.1009923>). Ravages also enables to perform genetic simulations (Bocher et al. 2023 <doi:10.1002/gepi.22529>).
Author: Ozvan Bocher [aut, cre],
Herve Perdry [aut],
Gaelle Marenne [aut]
Maintainer: Ozvan Bocher <ozvan.bocher@univ-brest.fr>
Diff between Ravages versions 1.1.3 dated 2023-03-28 and 1.2.0 dated 2026-02-27
Ravages-1.1.3/Ravages/data/LCT.matrix.rda |only Ravages-1.1.3/Ravages/data/datalist |only Ravages-1.1.3/Ravages/man/LCT.matrix.Rd |only Ravages-1.2.0/Ravages/DESCRIPTION | 26 Ravages-1.2.0/Ravages/MD5 | 115 - Ravages-1.2.0/Ravages/NEWS | 8 Ravages-1.2.0/Ravages/R/RAVA_FIRST.r | 15 Ravages-1.2.0/Ravages/R/adjustedCADD_annotation.r | 11 Ravages-1.2.0/Ravages/R/adjustedCADD_annotation_SNVs.r | 39 Ravages-1.2.0/Ravages/R/adjustedCADD_annotation_indels.r | 61 Ravages-1.2.0/Ravages/R/burden_NullObject.r | 2 Ravages-1.2.0/Ravages/R/burden_mlogit.r | 2 Ravages-1.2.0/Ravages/R/burden_mlogit_subscores.r | 2 Ravages-1.2.0/Ravages/R/filter_adjustedCADD.r | 4 Ravages-1.2.0/Ravages/R/multinomial.asso.freq.r | 2 Ravages-1.2.0/Ravages/R/rbm_GRR.r | 2 Ravages-1.2.0/Ravages/R/set_CADDregions.r | 53 Ravages-1.2.0/Ravages/build/vignette.rds |binary Ravages-1.2.0/Ravages/data/GnomADgenes.RData |binary Ravages-1.2.0/Ravages/data/Kryukov.rda |binary Ravages-1.2.0/Ravages/data/LCT.haplotypes.rda |binary Ravages-1.2.0/Ravages/data/Subregions_LCT_example.RData |binary Ravages-1.2.0/Ravages/data/genes.b37.RData |binary Ravages-1.2.0/Ravages/data/genes.b38.RData |binary Ravages-1.2.0/Ravages/inst/doc/Ravages_Simulations_vignette.Rmd | 2 Ravages-1.2.0/Ravages/inst/doc/Ravages_Simulations_vignette.pdf |binary Ravages-1.2.0/Ravages/inst/doc/Ravages_vignette.R | 209 +-- Ravages-1.2.0/Ravages/inst/doc/Ravages_vignette.Rmd | 695 ++++------ Ravages-1.2.0/Ravages/inst/doc/Ravages_vignette.pdf |binary Ravages-1.2.0/Ravages/inst/extdata |only Ravages-1.2.0/Ravages/man/CAST.Rd | 9 Ravages-1.2.0/Ravages/man/LCT.EUR.Rd |only Ravages-1.2.0/Ravages/man/LCT.haplotypes.Rd | 2 Ravages-1.2.0/Ravages/man/RAVA_FIRST.Rd | 57 Ravages-1.2.0/Ravages/man/SKAT.Rd | 17 Ravages-1.2.0/Ravages/man/SKAT.bootstrap.Rd | 22 Ravages-1.2.0/Ravages/man/SKAT.continuous.Rd | 10 Ravages-1.2.0/Ravages/man/SKAT.permutations.Rd | 16 Ravages-1.2.0/Ravages/man/SKAT.theoretical.Rd | 16 Ravages-1.2.0/Ravages/man/WSS.Rd | 9 Ravages-1.2.0/Ravages/man/adjustedCADD_annotation.Rd | 23 Ravages-1.2.0/Ravages/man/adjustedCADD_annotation_SNVs.Rd | 22 Ravages-1.2.0/Ravages/man/adjustedCADD_annotation_indels.Rd | 12 Ravages-1.2.0/Ravages/man/burden.Rd | 15 Ravages-1.2.0/Ravages/man/burden.continuous.Rd | 13 Ravages-1.2.0/Ravages/man/burden.continuous.subscores.Rd | 20 Ravages-1.2.0/Ravages/man/burden.mlogit.Rd | 18 Ravages-1.2.0/Ravages/man/burden.mlogit.subscores.Rd | 17 Ravages-1.2.0/Ravages/man/burden.subscores.Rd | 16 Ravages-1.2.0/Ravages/man/burden.weighted.matrix.Rd | 11 Ravages-1.2.0/Ravages/man/filter_adjustedCADD.Rd | 13 Ravages-1.2.0/Ravages/man/multinomial.asso.freq.Rd | 12 Ravages-1.2.0/Ravages/man/rbm.haplos.power.Rd | 3 Ravages-1.2.0/Ravages/man/set.CADDregions.Rd | 9 Ravages-1.2.0/Ravages/man/set.genomic.region.subregion.Rd | 4 Ravages-1.2.0/Ravages/vignettes/Ravages_Simulations_vignette.Rmd | 2 Ravages-1.2.0/Ravages/vignettes/Ravages_vignette.Rmd | 695 ++++------ 57 files changed, 1194 insertions(+), 1117 deletions(-)
Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating
grouped date classes.
Author: Tim Taylor [aut, cre]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between grates versions 1.7.1 dated 2025-12-19 and 1.7.2 dated 2026-02-27
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/grates.Rmd | 5 +++-- inst/doc/grates.html | 50 +++++++++++++++++++++++++++++++++++++------------- vignettes/assets |only vignettes/grates.Rmd | 5 +++-- 8 files changed, 57 insertions(+), 26 deletions(-)
Title: A Client for 'Evolution Cloud API'
Description: Provides an 'R' interface to the 'Evolution API'
<https://evoapicloud.com>, enabling sending and receiving 'WhatsApp'
messages directly from 'R'. Functions include sending text, media
(image/video/document), audio, stickers, geographic locations, contacts,
polls, interactive lists and button messages. Also includes number
verification and structured CLI logging for debugging.
Author: Andre Leite [aut, cre],
Hugo Vasconcelos [aut],
Diogo Bezerra [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between evolution versions 0.0.1 dated 2025-11-20 and 0.1.0 dated 2026-02-27
DESCRIPTION | 21 MD5 | 41 + NAMESPACE | 3 NEWS.md |only R/evolution.R | 844 ++++++++++++++++++++++++++++------------ R/zzz.R | 11 README.md | 182 +++++--- man/check_is_whatsapp.Rd |only man/dot-assert_scalar_string.Rd |only man/dot-evo_post.Rd | 10 man/dot-normalize_media.Rd |only man/evo_client.Rd | 21 man/jid.Rd | 17 man/send_buttons.Rd | 55 +- man/send_contact.Rd | 31 - man/send_list.Rd |only man/send_location.Rd | 29 - man/send_media.Rd | 52 +- man/send_poll.Rd | 31 - man/send_reaction.Rd | 26 - man/send_status.Rd | 31 - man/send_sticker.Rd | 26 - man/send_text.Rd | 33 - man/send_whatsapp_audio.Rd | 40 - 24 files changed, 1018 insertions(+), 486 deletions(-)
Title: Convert Country Names and Country Codes
Description: Standardize country names, convert them into one of 40
different coding schemes, convert between coding schemes, and assign
region descriptors.
Author: Vincent Arel-Bundock [aut, cre] ,
CJ Yetman [ctb] ,
Nils Enevoldsen [ctb] ,
Etienne Bacher [ctb] ,
Samuel Meichtry [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between countrycode versions 1.6.1 dated 2025-03-31 and 1.7.0 dated 2026-02-27
DESCRIPTION | 20 +++--- MD5 | 22 +++---- NEWS.md | 15 +++- R/codelist.R | 1 R/countrycode.R | 21 +++++- data/codelist.rda |binary data/codelist_panel.rda |binary man/codelist.Rd | 1 man/countrycode.Rd | 5 + tests/testthat/test-codelist.R | 2 tests/testthat/test-corner-cases.R | 112 ++++++++++++++++++++++++++++++++++++ tests/testthat/test-regex-special.R | 65 ++++++++++++++++++++ 12 files changed, 231 insertions(+), 33 deletions(-)
Title: Bayesian Mode Inference
Description: A two-step Bayesian approach for mode inference following
Cross, Hoogerheide, Labonne and van Dijk (2024) <doi:10.1016/j.econlet.2024.111579>).
First, a mixture distribution is fitted on the data using a sparse finite
mixture (SFM) Markov chain Monte Carlo (MCMC) algorithm. The number of
mixture components does not have to be known; the size of the mixture is
estimated endogenously through the SFM approach. Second, the modes of the
estimated mixture at each MCMC draw are retrieved using algorithms
specifically tailored for mode detection. These estimates are then used to
construct posterior probabilities for the number of modes, their locations
and uncertainties, providing a powerful tool for mode inference.
Author: Nalan Bastuerk [aut],
Jamie Cross [aut],
Peter de Knijff [aut],
Lennart Hoogerheide [aut],
Paul Labonne [aut, cre],
Herman van Dijk [aut]
Maintainer: Paul Labonne <labonnepaul@gmail.com>
Diff between BayesMultiMode versions 0.7.4 dated 2025-09-27 and 0.7.5 dated 2026-02-27
DESCRIPTION | 8 MD5 | 98 +- NAMESPACE | 127 +- NEWS.md | 87 - R/bayes_fit.R | 476 +++++----- R/bayes_mixture.R | 362 +++---- R/bayes_mode.R | 700 +++++++------- R/bayes_trace.R | 116 +- R/data.R | 116 +- R/gibbs_sfm_algos.R | 1412 +++++++++++++++--------------- R/mix_mode.R | 832 ++++++++--------- R/mixture.R | 252 ++--- R/mixture_functions.R | 290 +++--- R/plot_methods.R | 782 ++++++++-------- R/print_methods.R | 242 ++--- R/summary_methods.R | 242 ++--- README.md | 615 ++++++------- THANKS | 14 build/partial.rdb |binary inst/REFERENCES.bib | 332 +++---- man/bayes_fit.Rd | 368 +++---- man/bayes_mixture.Rd | 246 ++--- man/bayes_mode.Rd | 328 +++--- man/bayes_trace.Rd | 86 - man/ct47.Rd | 46 man/cyclone.Rd | 52 - man/d4z4.Rd | 46 man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/galaxy.Rd | 44 man/gibbs_SFM.Rd | 24 man/mix_mode.Rd | 342 +++---- man/mixture.Rd | 176 +-- man/plot.bayes_mixture.Rd | 50 - man/plot.bayes_mode.Rd | 40 man/plot.mix_mode.Rd | 44 man/print.bayes_mixture.Rd | 44 man/print.bayes_mode.Rd | 44 man/print.mix_mode.Rd | 44 man/summary.bayes_mixture.Rd | 40 man/summary.bayes_mode.Rd | 32 man/summary.mix_mode.Rd | 32 tests/testthat.R | 24 tests/testthat/_snaps/bayes_mode.md | 82 - tests/testthat/test-bayes_mixture.R | 86 - tests/testthat/test-bayes_mode.R | 310 +++--- tests/testthat/test-mix_mode.R | 292 +++--- tests/testthat/test-mixture.R | 80 - 50 files changed, 5088 insertions(+), 5017 deletions(-)
More information about BayesMultiMode at CRAN
Permanent link
Title: Basis Expansions for Regression Modeling
Description: Provides various basis expansions for flexible regression modeling,
including random Fourier features (Rahimi & Recht, 2007)
<https://proceedings.neurips.cc/paper_files/paper/2007/file/013a006f03dbc5392effeb8f18fda755-Paper.pdf>,
exact kernel / Gaussian process feature maps, prior features for Bayesian
Additive Regression Trees (BART) (Chipman et al., 2010) <doi:10.1214/09-AOAS285>,
and a helpful interface for n-way interactions. The provided functions may
be used within any modeling formula, allowing the use of kernel methods and
other basis expansions in modeling functions that do not otherwise support
them. Along with the basis expansions, a number of kernel functions are also
provided, which support kernel arithmetic to form new kernels. Basic ridge
regression functionality is included as well.
Author: Cory McCartan [aut, cre, cph]
Maintainer: Cory McCartan <mccartan@psu.edu>
Diff between bases versions 0.1.2 dated 2025-05-29 and 0.2.0 dated 2026-02-27
DESCRIPTION | 20 +++++---- MD5 | 82 ++++++++++++++++++++++++-------------- NAMESPACE | 25 +++++++++++ NEWS.md | 13 ++++++ R/b_bart.R | 53 ++++++++++++++++++------ R/b_conv.R |only R/b_gff.R |only R/b_inter.R | 39 +++++++++++++----- R/b_ker.R | 43 +++++++++++++++----- R/b_nn.R |only R/b_rff.R | 85 +++++++++++++++++++++++++--------------- R/b_tpsob.R |only R/bases-package.R | 3 - R/cpp11.R | 12 +++++ R/kernel.R | 48 ++++++++++++++++------ R/mgcv.R |only R/recipes.R | 76 ++++++++++++++++++++++++++++------- R/ridge.R | 7 +-- R/transform.R | 39 +++++++++++++----- README.md | 38 ++++++++++++----- build/vignette.rds |binary inst/doc/others.R |only inst/doc/others.Rmd |only inst/doc/others.html |only man/b_bart.Rd | 5 ++ man/b_conv.Rd |only man/b_gff.Rd |only man/b_inter.Rd | 2 man/b_ker.Rd | 8 +++ man/b_nn.Rd |only man/b_rff.Rd | 6 +- man/b_tpsob.Rd |only man/bases-package.Rd | 2 man/bases_mgcv.Rd |only man/step_basis.Rd | 2 src/bart.cpp | 4 - src/cpp11.cpp | 30 ++++++++++++-- src/dist.cpp | 1 src/im2col.cpp |only src/tpsob.cpp |only tests/testthat/test-bart.R | 12 ++--- tests/testthat/test-conv.R |only tests/testthat/test-inter.R | 32 +++++++++++++-- tests/testthat/test-ker-exact.R | 42 ++++++++++++++++--- tests/testthat/test-kernels.R | 30 +++++++++----- tests/testthat/test-mgcv.R |only tests/testthat/test-nn.R |only tests/testthat/test-recipes.R | 15 ++++--- tests/testthat/test-rff.R | 43 ++++++++++++-------- tests/testthat/test-ridge.R | 11 +++-- tests/testthat/test-tpsob.R |only vignettes/others.Rmd |only 52 files changed, 603 insertions(+), 225 deletions(-)
Title: Design of Experiments and Factorial Plans Utilities
Description: A number of functions to create and analyze factorial plans according to the Design of Experiments (DoE) approach, with the addition of some utility function to perform some statistical analyses. DoE approach follows the approach in "Design and Analysis of Experiments" by Douglas C. Montgomery (2019, ISBN:978-1-119-49244-3). The package also provides utilities used in the course "Analysis of Data and Statistics" at the University of Trento, Italy.
Author: Paolo Bosetti [aut, cre]
Maintainer: Paolo Bosetti <paolo.bosetti@unitn.it>
Diff between adas.utils versions 1.3.0 dated 2025-11-14 and 1.4.0 dated 2026-02-27
DESCRIPTION | 6 MD5 | 28 +- NAMESPACE | 14 + NEWS.md | 4 R/geoms.R |only R/stats.R | 23 +- inst/doc/adas.utils.R | 44 +++- inst/doc/adas.utils.Rmd | 65 +++++ inst/doc/adas.utils.html | 403 ++++++++++++++++++++----------------- man/daniel_plot_hn.Rd | 9 man/geom_pareto_bars.Rd |only man/geom_pareto_line.Rd |only man/geom_qqhn.Rd |only man/geom_qqhn_band.Rd |only man/geom_qqhn_line.Rd |only man/scale_y_pareto.Rd |only tests/testthat/test-pareto.R |only tests/testthat/test-qqhn.R |only tests/testthat/test-scale-pareto.R |only vignettes/adas.utils.Rmd | 65 +++++ 20 files changed, 444 insertions(+), 217 deletions(-)
Title: Download Data from Mexico's Air Quality Information System
Description: Easy-to-use functions for downloading air quality data from
the Mexican National Air Quality Information System (SINAICA). Allows
you to query pollution and meteorological parameters from more than a
hundred monitoring stations located throughout Mexico. See
<https://sinaica.inecc.gob.mx> for more information.
Author: Diego Valle-Jones [aut, cre]
Maintainer: Diego Valle-Jones <diego@diegovalle.net>
Diff between rsinaica versions 1.1.0 dated 2024-06-21 and 1.1.1 dated 2026-02-27
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 6 ++++-- data/stations_sinaica.rda |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary tests/testthat/test-sinaica_params_and_dates.R | 4 ++-- 7 files changed, 17 insertions(+), 15 deletions(-)
Title: Metabolomics Data Analysis Functions
Description: A collection of functions for processing and analyzing metabolite data.
The namesake function mrbin() converts 1D
or 2D Nuclear Magnetic Resonance data into a matrix of values suitable for further data analysis and
performs basic processing steps in a reproducible way. Negative values, a
common issue in such data, can be replaced by positive values (<doi:10.1021/acs.jproteome.0c00684>). All used
parameters are stored in a readable text file and can be restored from that
file to enable exact reproduction of the data at a later time. The function fia() ranks features according
to their impact on classifier models, especially artificial neural network models.
Author: Matthias Klein [aut, cre]
Maintainer: Matthias Klein <matthias.s.klein@gmx.net>
Diff between mrbin versions 1.9.4 dated 2025-07-16 and 1.9.5 dated 2026-02-27
mrbin-1.9.4/mrbin/inst/extdata/TMP |only mrbin-1.9.5/mrbin/DESCRIPTION | 10 mrbin-1.9.5/mrbin/MD5 | 30 mrbin-1.9.5/mrbin/NAMESPACE | 2 mrbin-1.9.5/mrbin/NEWS.md | 11 mrbin-1.9.5/mrbin/R/mrbin.R | 2812 ++++++++++++++++---------- mrbin-1.9.5/mrbin/README.md | 6 mrbin-1.9.5/mrbin/build/vignette.rds |binary mrbin-1.9.5/mrbin/inst/doc/mrbin.Rnw | 6 mrbin-1.9.5/mrbin/inst/doc/mrbin.pdf |binary mrbin-1.9.5/mrbin/inst/extdata/def2 |only mrbin-1.9.5/mrbin/inst/extdata/ord |only mrbin-1.9.5/mrbin/man/annotatemrbin.Rd | 40 mrbin-1.9.5/mrbin/man/createAnnotationList.Rd |only mrbin-1.9.5/mrbin/man/mrplot.Rd | 2 mrbin-1.9.5/mrbin/man/plotPCA.Rd | 5 mrbin-1.9.5/mrbin/man/plotResults.Rd | 10 mrbin-1.9.5/mrbin/vignettes/mrbin.Rnw | 6 18 files changed, 1873 insertions(+), 1067 deletions(-)
Title: Fast Utilities for Year Month Day Objects
Description: A collection of utility functions for working with
Year Month Day objects. Includes functions for fast parsing of numeric
and character input based on algorithms described in Hinnant, H. (2021)
<https://howardhinnant.github.io/date_algorithms.html> as well as a branchless
calculation of leap years by Jerichaux (2025) <https://stackoverflow.com/a/79564914>.
Author: Tim Taylor [aut, cre] ,
Howard Hinnant [aut] ,
jerichaux [aut]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between fastymd versions 0.1.4 dated 2025-10-03 and 0.1.5 dated 2026-02-27
DESCRIPTION | 6 +-- MD5 | 17 ++++----- NEWS.md | 4 ++ README.md | 21 ++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/fastymd.Rmd | 7 ++- inst/doc/fastymd.html | 93 +++++++++++++++++++++++++++++++------------------- vignettes/assets |only vignettes/fastymd.Rmd | 7 ++- 10 files changed, 92 insertions(+), 63 deletions(-)
Title: Algebra over Probability Distributions
Description: Provides an algebra over probability distributions enabling
composition, sampling, and automatic simplification to closed forms.
Supports normal, exponential, gamma, Weibull, chi-squared, uniform,
beta, log-normal, Poisson, multivariate normal, empirical, and mixture
distributions with algebraic operators (addition, subtraction,
multiplication, division, power, exp, log, min, max) that automatically
simplify when mathematical identities apply. Includes closed-form MVN
conditioning (Schur complement), affine transformations, mixture
marginals/conditionals (Bayes rule), and limiting distribution builders
(CLT, LLN, delta method). Uses S3 classes for distributions and R6
for support objects.
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <lex@metafunctor.com>
Diff between algebraic.dist versions 0.1.0 dated 2025-12-17 and 0.9.1 dated 2026-02-27
algebraic.dist-0.1.0/algebraic.dist/man/limit.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/DESCRIPTION | 20 algebraic.dist-0.9.1/algebraic.dist/MD5 | 447 +++++++--- algebraic.dist-0.9.1/algebraic.dist/NAMESPACE | 181 ++++ algebraic.dist-0.9.1/algebraic.dist/NEWS.md | 101 ++ algebraic.dist-0.9.1/algebraic.dist/R/algebra.R | 226 ++++- algebraic.dist-0.9.1/algebraic.dist/R/beta_dist.R |only algebraic.dist-0.9.1/algebraic.dist/R/chi_squared.R |only algebraic.dist-0.9.1/algebraic.dist/R/countable_set.R |only algebraic.dist-0.9.1/algebraic.dist/R/dist.R | 58 + algebraic.dist-0.9.1/algebraic.dist/R/edist.R | 430 ++++++++- algebraic.dist-0.9.1/algebraic.dist/R/empirical_dist.R | 149 +++ algebraic.dist-0.9.1/algebraic.dist/R/exponential.R | 76 + algebraic.dist-0.9.1/algebraic.dist/R/finite_set.R | 19 algebraic.dist-0.9.1/algebraic.dist/R/gamma_dist.R |only algebraic.dist-0.9.1/algebraic.dist/R/generic_dist.R | 105 ++ algebraic.dist-0.9.1/algebraic.dist/R/interval.R | 22 algebraic.dist-0.9.1/algebraic.dist/R/limits.R |only algebraic.dist-0.9.1/algebraic.dist/R/lognormal.R |only algebraic.dist-0.9.1/algebraic.dist/R/mixture.R |only algebraic.dist-0.9.1/algebraic.dist/R/mvn.R | 271 +++++- algebraic.dist-0.9.1/algebraic.dist/R/normal.R | 72 + algebraic.dist-0.9.1/algebraic.dist/R/poisson_dist.R |only algebraic.dist-0.9.1/algebraic.dist/R/realize.R |only algebraic.dist-0.9.1/algebraic.dist/R/realized_dist.R |only algebraic.dist-0.9.1/algebraic.dist/R/support.R | 23 algebraic.dist-0.9.1/algebraic.dist/R/uniform_dist.R |only algebraic.dist-0.9.1/algebraic.dist/R/univariate_dist.R | 17 algebraic.dist-0.9.1/algebraic.dist/R/utils.R | 19 algebraic.dist-0.9.1/algebraic.dist/R/weibull_dist.R |only algebraic.dist-0.9.1/algebraic.dist/README.md | 178 ++- algebraic.dist-0.9.1/algebraic.dist/build/vignette.rds |binary algebraic.dist-0.9.1/algebraic.dist/inst/doc/algebra.R |only algebraic.dist-0.9.1/algebraic.dist/inst/doc/algebra.Rmd |only algebraic.dist-0.9.1/algebraic.dist/inst/doc/algebra.html |only algebraic.dist-0.9.1/algebraic.dist/inst/doc/example.html | 136 +-- algebraic.dist-0.9.1/algebraic.dist/inst/doc/multivariate.R |only algebraic.dist-0.9.1/algebraic.dist/inst/doc/multivariate.Rmd |only algebraic.dist-0.9.1/algebraic.dist/inst/doc/multivariate.html |only algebraic.dist-0.9.1/algebraic.dist/man/Math.dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/affine_transform.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/as_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/cdf.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.empirical_dist.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/cdf.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/cdf.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.mvn.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/cdf.normal.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/cdf.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/clt.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/conditional.Rd | 11 algebraic.dist-0.9.1/algebraic.dist/man/conditional.dist.Rd | 16 algebraic.dist-0.9.1/algebraic.dist/man/conditional.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/conditional.empirical_dist.Rd | 12 algebraic.dist-0.9.1/algebraic.dist/man/conditional.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/conditional.mvn.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/countable_set.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/delta_clt.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/density.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/density.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/density.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/density.empirical_dist.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/density.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/density.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/density.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/density.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/density.mvn.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/density.normal.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/density.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/density.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/density.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dim.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dim.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dim.countable_set.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dim.empirical_dist.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/dim.exponential.Rd | 3 algebraic.dist-0.9.1/algebraic.dist/man/dim.finite_set.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/dim.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dim.interval.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/dim.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dim.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dim.mvn.Rd | 3 algebraic.dist-0.9.1/algebraic.dist/man/dim.normal.Rd | 3 algebraic.dist-0.9.1/algebraic.dist/man/dim.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dim.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dim.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dist_summary_group.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dot-dist.Rd | 14 algebraic.dist-0.9.1/algebraic.dist/man/edist.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/empirical_dist.Rd | 13 algebraic.dist-0.9.1/algebraic.dist/man/ensure_realized.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/expectation.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/expectation.dist.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/expectation.empirical_dist.Rd | 5 algebraic.dist-0.9.1/algebraic.dist/man/expectation.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/expectation.univariate_dist.Rd | 12 algebraic.dist-0.9.1/algebraic.dist/man/expectation_data.Rd | 12 algebraic.dist-0.9.1/algebraic.dist/man/exponential.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/format.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.empirical_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.exponential.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.mvn.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.normal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.realized_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/has.Rd | 12 algebraic.dist-0.9.1/algebraic.dist/man/has.countable_set.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/has.finite_set.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/has.interval.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/hazard.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/hazard.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/hazard.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/hazard.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/hazard.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/hazard.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/infimum.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/infimum.countable_set.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/infimum.finite_set.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/infimum.interval.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.empirical_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.normal.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_dist.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/is_edist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/is_empirical_dist.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/is_exponential.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/is_gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_mvn.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/is_normal.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/is_poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_realized_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/lln.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/marginal.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/marginal.empirical_dist.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/marginal.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/marginal.mvn.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/mean.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.edist.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/mean.empirical_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/mean.exponential.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/mean.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.mvn.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/mean.normal.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/mean.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.univariate_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/mean.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mvn.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/nobs.empirical_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/normal.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/normal_approx.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/nparams.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/nparams.empirical_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/nparams.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/obs.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/obs.empirical_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/params.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/params.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.edist.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/params.empirical_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/params.exponential.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/params.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.mvn.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/params.normal.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/params.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/plus-.dist.Rd | 17 algebraic.dist-0.9.1/algebraic.dist/man/poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/pow-.dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.edist.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/print.empirical_dist.Rd | 11 algebraic.dist-0.9.1/algebraic.dist/man/print.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/print.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.interval.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/print.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.mvn.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/print.normal.Rd | 11 algebraic.dist-0.9.1/algebraic.dist/man/print.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.realized_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.summary_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/print.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/realize.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/realized_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/rmap.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/rmap.dist.Rd | 16 algebraic.dist-0.9.1/algebraic.dist/man/rmap.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/rmap.empirical_dist.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/rmap.mvn.Rd | 11 algebraic.dist-0.9.1/algebraic.dist/man/sample_mvn_region.Rd | 11 algebraic.dist-0.9.1/algebraic.dist/man/sampler.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/sampler.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.default.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/sampler.edist.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/sampler.empirical_dist.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/sampler.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/sampler.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.mvn.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/sampler.normal.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/sampler.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/simplify.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/simplify.dist.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/simplify.edist.Rd | 43 algebraic.dist-0.9.1/algebraic.dist/man/slash-.dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/summary.dist.Rd | 3 algebraic.dist-0.9.1/algebraic.dist/man/summary_dist.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/sup.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/sup.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.empirical_dist.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/sup.exponential.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/sup.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.mvn.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/sup.normal.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/sup.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/supremum.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/supremum.countable_set.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/supremum.finite_set.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/supremum.interval.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/surv.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/surv.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/surv.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/surv.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/surv.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/surv.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/times-.dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.default.Rd | 3 algebraic.dist-0.9.1/algebraic.dist/man/vcov.edist.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/vcov.empirical_dist.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/vcov.exponential.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/vcov.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.mvn.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/vcov.normal.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/vcov.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.univariate_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/vcov.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-algebra-extended.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-beta_dist.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-chi_squared.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-countable_set.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-edist.R | 24 algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-exponential.R | 2 algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-gamma_dist.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-limits.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-lognormal.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-mixture.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-mvn-algebra.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-mvn.R | 4 algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-normal.R | 4 algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-poisson_dist.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-realize.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-support.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-uniform_dist.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-weibull_dist.R |only algebraic.dist-0.9.1/algebraic.dist/vignettes/algebra.Rmd |only algebraic.dist-0.9.1/algebraic.dist/vignettes/multivariate.Rmd |only 317 files changed, 2964 insertions(+), 470 deletions(-)
More information about algebraic.dist at CRAN
Permanent link
Title: Shared Tools for Tracking Data
Description: A collection of commonly used tools for animal movement and other tracking
data. Variously distance, angle, bearing, distance-to, bearing-to and speed are
provided for geographic data that can be used directly or within 'tidyverse'
syntax. Distances and bearings are calculated using modern geodesic methods as
provided by Charles F. F. Karney (2013) <doi:10.1007/s00190-012-0578-z>
via the 'geographiclib' package.
Author: Michael Sumner [aut, cre]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between traipse versions 0.3.0 dated 2022-10-10 and 0.4.0 dated 2026-02-27
DESCRIPTION | 19 + MD5 | 42 ++-- NAMESPACE | 2 NEWS.md | 13 + R/track_angle.R | 5 R/track_bearing.R | 8 R/track_bearing_to.R | 2 R/track_intermediate.R | 16 + R/track_query.R | 2 R/track_turn.R | 7 README.md | 193 ++++++++++---------- build/partial.rdb |binary man/figures/README-example-group_by-1.png |binary man/figures/README-example-group_by-2.png |binary man/figures/README-example-group_by-3.png |binary man/figures/README-intermediate-1.png |binary man/figures/README-intermediate-2.png |binary man/track_intermediate.Rd | 4 man/traipse-package.Rd | 6 tests/testthat/test-bearing_to.R | 6 tests/testthat/test-geosphere-migration.R |only tests/testthat/test-intermediates.R | 6 tests/testthat/test-traipse-geosphere-equivalence.R |only 23 files changed, 183 insertions(+), 148 deletions(-)
Title: Fast and Efficient (Automated) Analysis of Sparse Omics Data
Description: A generalised data structure for fast and efficient loading and data munching of sparse omics data. The 'OmicFlow' requires an up-front validated metadata template from the user,
which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an 'omics' class.
Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated 'autoFlow' method to generate a comprehensive report.
Author: Alem Gusinac [aut, cre] ,
Thomas Ederveen [aut] ,
Annemarie Boleij [aut, fnd]
Maintainer: Alem Gusinac <alem.gusinac@gmail.com>
Diff between OmicFlow versions 1.5.0 dated 2026-01-26 and 1.5.1 dated 2026-02-27
OmicFlow-1.5.0/OmicFlow/tests/testthat/_snaps/utils.md |only OmicFlow-1.5.1/OmicFlow/DESCRIPTION | 8 OmicFlow-1.5.1/OmicFlow/MD5 | 80 +- OmicFlow-1.5.1/OmicFlow/NAMESPACE | 4 OmicFlow-1.5.1/OmicFlow/R/colormap.R | 12 OmicFlow-1.5.1/OmicFlow/R/composition_plot.R | 5 OmicFlow-1.5.1/OmicFlow/R/diversity_plot.R | 316 +++++----- OmicFlow-1.5.1/OmicFlow/R/foldchange.R | 83 -- OmicFlow-1.5.1/OmicFlow/R/hill_taxa.R | 5 OmicFlow-1.5.1/OmicFlow/R/metagenomics-class.R | 5 OmicFlow-1.5.1/OmicFlow/R/omics-class.R | 92 +- OmicFlow-1.5.1/OmicFlow/R/ordination_plot.R | 29 OmicFlow-1.5.1/OmicFlow/R/pairwise_adonis.R | 14 OmicFlow-1.5.1/OmicFlow/R/pairwise_anosim.R | 18 OmicFlow-1.5.1/OmicFlow/R/plot_pairwise_stats.R | 7 OmicFlow-1.5.1/OmicFlow/R/utils.R | 5 OmicFlow-1.5.1/OmicFlow/man/diversity_plot.Rd | 16 OmicFlow-1.5.1/OmicFlow/man/foldchange.Rd | 219 ++---- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/alpha_diversity.md | 156 ++-- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/composition.md | 138 ++-- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/dfe.md | 126 +-- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/distances.md | 252 +++---- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/hill.md | 84 +- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/metagenomics.md | 11 OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/omics.md | 88 +- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/proteomics.md | 13 OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/subsetting.md | 96 +-- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/sync.md | 44 - OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/transformations.md | 48 - OmicFlow-1.5.1/OmicFlow/tests/testthat/input/metagenomics/biom_with_taxonomy_json.biom | 43 + OmicFlow-1.5.1/OmicFlow/tests/testthat/input/proteomics/counts_without_rownames.csv |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-alpha_diversity.R | 13 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-colormap.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-composition.R | 14 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-distances.R | 30 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-diversity.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-diversity_plot.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-hill.R | 2 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-metagenomics.R | 20 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-ordination_plot.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-pairwise_stats.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-plot_pairwise_stats.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-proteomics.R | 29 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-rankstat.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-utils.R | 31 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-volcano_plot.R |only 46 files changed, 1169 insertions(+), 987 deletions(-)
Title: Collection of Functions for Working with Age Intervals
Description: Provides a collection of efficient functions for working with
individual ages and corresponding intervals. These include functions for
conversion from an age to an interval, aggregation of ages with associated
counts in to intervals and the splitting of interval counts based on
specified age distributions.
Author: Tim Taylor [aut, cre, cph] ,
Edwin van Leeuwen [aut]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between ageutils versions 0.1.1 dated 2025-10-13 and 0.1.2 dated 2026-02-27
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/ageutils.Rmd | 6 ++++-- inst/doc/ageutils.html | 49 +++++++++++++++++++++++++++++++++++++------------ vignettes/ageutils.Rmd | 6 ++++-- vignettes/assets |only 8 files changed, 60 insertions(+), 26 deletions(-)
Title: Generate and Translate Standard UUIDs
Description: Generate and translate standard Universally Unique Identifiers (UUIDs) into shorter - or just different - formats and back. Also implements base58 encoders and decoders.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between shortuuid versions 0.1.0 dated 2025-07-22 and 0.1.1 dated 2026-02-27
DESCRIPTION | 6 +-- MD5 | 10 ++--- NEWS.md | 4 ++ src/RcppExports.cpp | 4 +- src/base58.cpp | 87 ++++++++++++++++++++-------------------------------- src/uuid.h | 16 +++++---- 6 files changed, 58 insertions(+), 69 deletions(-)
Title: Flexible Bayesian Optimization
Description: A modern and flexible approach to Bayesian Optimization / Model
Based Optimization building on the 'bbotk' package. 'mlr3mbo' is a toolbox
providing both ready-to-use optimization algorithms as well as their fundamental
building blocks allowing for straightforward implementation of custom
algorithms. Single- and multi-objective optimization is supported as well as
mixed continuous, categorical and conditional search spaces. Moreover, using
'mlr3mbo' for hyperparameter optimization of machine learning models within the
'mlr3' ecosystem is straightforward via 'mlr3tuning'. Examples of ready-to-use
optimization algorithms include Efficient Global Optimization by Jones et al.
(1998) <doi:10.1023/A:1008306431147>, ParEGO by Knowles (2006)
<doi:10.1109/TEVC.2005.851274> and SMS-EGO by Ponweiser et al. (2008)
<doi:10.1007/978-3-540-87700-4_78>.
Author: Marc Becker [cre, aut] ,
Lennart Schneider [aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Florian Pfisterer [aut] ,
Martin Binder [aut],
Sebastian Fischer [aut] ,
Michael H. Buselli [cph],
Wessel Dankers [cph],
Carlos Fonseca [...truncated...]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3mbo versions 0.3.3 dated 2025-10-10 and 1.0.0 dated 2026-02-27
DESCRIPTION | 30 ++-- MD5 | 116 +++++++++------- NAMESPACE | 9 + NEWS.md | 6 R/AcqOptimizer.R | 8 - R/AcqOptimizerDirect.R |only R/AcqOptimizerLbfgsb.R |only R/AcqOptimizerLocalSearch.R |only R/AcqOptimzerRandomSearch.R |only R/OptimizerAsyncMbo.R | 19 +- R/OptimizerMbo.R | 19 ++ R/Surrogate.R | 10 - R/SurrogateLearner.R | 54 ++++--- R/bayesopt_ego.R | 12 + R/bayesopt_emo.R | 9 - R/bayesopt_mpcl.R | 11 + R/bayesopt_parego.R | 9 - R/bayesopt_smsego.R | 9 - R/conditions.R |only R/mbo_defaults.R | 161 +++++++++-------------- R/mlr_acqoptimizers.R |only R/sugar.R | 12 + build/partial.rdb |binary man/AcqOptimizerDirect.Rd |only man/AcqOptimizerLbfgsb.Rd |only man/AcqOptimizerLocalSearch.Rd |only man/AcqOptimizerRandomSearch.Rd |only man/acqo.Rd | 7 - man/default_acqfunction.Rd | 3 man/default_acqoptimizer.Rd | 6 man/default_gp.Rd | 18 +- man/default_rf.Rd | 12 - man/default_surrogate.Rd | 35 +---- man/mbo_defaults.Rd | 3 man/mlr3mbo-package.Rd | 4 man/mlr3mbo_conditions.Rd |only man/mlr_acqfunctions.Rd | 1 man/mlr_acqoptimizers.Rd |only man/mlr_input_trafos.Rd | 1 man/mlr_loop_functions.Rd | 1 man/mlr_optimizers_async_mbo.Rd | 16 ++ man/mlr_optimizers_mbo.Rd | 16 ++ man/mlr_output_trafos.Rd | 1 man/mlr_result_assigners.Rd | 1 tests/testthat/_snaps |only tests/testthat/helper.R | 10 + tests/testthat/test_AcqFunctionMulti.R | 2 tests/testthat/test_AcqFunctionStochasticCB.R | 34 +++- tests/testthat/test_AcqFunctionStochasticEI.R | 21 ++- tests/testthat/test_AcqOptimizer.R | 118 ++++++++-------- tests/testthat/test_AcqOptimizerDirect.R |only tests/testthat/test_AcqOptimizerLbfgsb.R |only tests/testthat/test_AcqOptimizerLocalSearch.R |only tests/testthat/test_AcqOptimizerRandomSearch.R |only tests/testthat/test_InputTrafoUnitcube.R | 5 tests/testthat/test_OptimizerAsyncMbo.R | 2 tests/testthat/test_OptimizerMbo.R | 10 + tests/testthat/test_OutputTrafoLog.R | 6 tests/testthat/test_OutputTrafoStandardize.R | 5 tests/testthat/test_ResultAssignerArchive.R | 4 tests/testthat/test_ResultAssignerSurrogate.R | 6 tests/testthat/test_SurrogateLearner.R | 14 +- tests/testthat/test_SurrogateLearnerCollection.R | 8 - tests/testthat/test_TunerAsyncMbo.R | 2 tests/testthat/test_TunerMbo.R | 6 tests/testthat/test_bayesopt_ego.R | 122 ++++++++--------- tests/testthat/test_conditions.R |only tests/testthat/test_mbo_defaults.R | 128 ++++++++++++------ 68 files changed, 648 insertions(+), 474 deletions(-)
Title: Access to 'GeographicLib'
Description: Bindings to the 'GeographicLib' C++ library
<https://geographiclib.sourceforge.io/> for precise geodetic calculations
including geodesic computations (distance, bearing, paths, intersections),
map projections (UTM/UPS, Transverse Mercator, Lambert Conformal Conic,
and more), grid reference systems (MGRS, Geohash, GARS, Georef),
coordinate conversions (geocentric, local Cartesian), and polygon area
on the WGS84 ellipsoid. All functions are fully vectorized.
Author: Michael Sumner [cre, aut],
Charles Karney [cph, aut] ,
Mark Borgerding [cph] )
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between geographiclib versions 0.4.0 dated 2026-02-25 and 0.4.1 dated 2026-02-27
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 7 +++++++ inst/doc/geographiclib-overview.html | 6 +++--- src/000_polygonarea_geographiclib.cpp | 6 ++++-- src/GeographicLib/Trigfun.hpp | 1 + 6 files changed, 23 insertions(+), 13 deletions(-)
Title: Quantifying Similarity of Datasets and Multivariate Two- And
k-Sample Testing
Description: A collection of methods for quantifying the similarity of two or more datasets, many of which can be used for two- or k-sample testing. It provides newly implemented methods as well as wrapper functions for existing methods that enable calling many different methods in a unified framework. The methods were selected from the review and comparison of Stolte et al. (2024) <doi:10.1214/24-SS149>. An empirical comparison of the methods for categorical data was performed in Stolte et al. (2025) <doi:10.17877/DE290R-25572>.
Author: Marieke Stolte [aut, cre, cph] ,
Luca Sauer [aut] ,
David Alvarez-Melis [ctb] ,
Nabarun Deb [ctb] , <https://github.com/NabarunD/MultiDistFree.git>),
Bodhisattva Sen [ctb] , <https://github.com/NabarunD/MultiDistFree.git>)
Maintainer: Marieke Stolte <stolte@statistik.tu-dortmund.de>
Diff between DataSimilarity versions 0.2.0 dated 2025-06-16 and 0.3.0 dated 2026-02-27
ChangeLog | 27 DESCRIPTION | 10 MD5 | 106 NAMESPACE | 2 R/BF.R | 2 R/CCS.R | 12 R/CF.R | 12 R/FR.R | 12 R/GGRL.R | 2 R/NKT.R | 2 R/SH.R | 2 R/ZC.R | 12 R/gTests.R | 14 R/helper_functions_density_based_methods.R | 32 R/helper_functions_gTests.R | 16 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Details.pdf |binary inst/doc/GettingStarted.pdf |binary man/BF.Rd | 4 man/C2ST.Rd | 10 man/CCS.Rd | 10 man/CCS_cat.Rd | 13 man/CF.Rd | 10 man/CF_cat.Rd | 13 man/FR.Rd | 10 man/FR_cat.Rd | 13 man/GGRL.Rd | 7 man/MST.Rd | 5 man/NKT.Rd | 13 man/SH.Rd | 7 man/ZC.Rd | 10 man/ZC_cat.Rd | 13 man/dipro.fun.Rd | 8 man/gTests.Rd | 4 man/gTests_cat.Rd | 12 tests/testthat/test-BG.R | 2 tests/testthat/test-BG2.R | 2 tests/testthat/test-BQS.R | 2 tests/testthat/test-BallDivergence.R | 2 tests/testthat/test-C2ST.R | 2 tests/testthat/test-CMDistance.R | 2 tests/testthat/test-Energy_DISCO.R | 6 tests/testthat/test-FR_CF_CCS_ZC.R | 26 tests/testthat/test-GPK.R | 2 tests/testthat/test-KMD.R | 2 tests/testthat/test-MMCM.R | 2 tests/testthat/test-NKT_GGRL.R | 2 tests/testthat/test-Petrie.R | 2 tests/testthat/test-Rosenbaum.R | 2 tests/testthat/test-SH.R | 2 tests/testthat/test-Wasserstein.R | 2 tests/testthat/test-engineerMetric.R | 2 vignettes/refs.bib | 9628 ++++++++++++++--------------- 54 files changed, 5116 insertions(+), 4999 deletions(-)
More information about DataSimilarity at CRAN
Permanent link
Title: Spatially Aware Cell-Cell Interaction Analysis
Description: Provides tools for analyzing spatial cell-cell interactions based on ligand-receptor pairs, including functions for local, regional, and global analysis using spatial transcriptomics data. Integrates with databases like 'CellChat' <https://github.com/jinworks/CellChat>, 'CellPhoneDB' <https://www.cellphonedb.org/>, 'Cellinker' <https://www.rna-society.org/cellinker/>, 'ICELLNET' <https://github.com/soumelis-lab/ICELLNET>, and 'ConnectomeDB' <https://humanconnectome.org/software/connectomedb/> to identify ligand-receptor pairs, visualize interactions through heatmaps, chord diagrams, and infer interactions on different spatial scales.
Author: Li-Ting Ku [aut, cre]
Maintainer: Li-Ting Ku <lku@mdanderson.org>
Diff between SpaCCI versions 1.0.4 dated 2025-05-12 and 1.0.5 dated 2026-02-27
SpaCCI-1.0.4/SpaCCI/R/DB_dataframe.R |only SpaCCI-1.0.4/SpaCCI/data/DB_dataframe.rda |only SpaCCI-1.0.4/SpaCCI/man/DB_dataframe.Rd |only SpaCCI-1.0.4/SpaCCI/man/self_identified_LR.Rd |only SpaCCI-1.0.5/SpaCCI/DESCRIPTION | 14 ++-- SpaCCI-1.0.5/SpaCCI/MD5 | 23 ++---- SpaCCI-1.0.5/SpaCCI/NAMESPACE | 3 SpaCCI-1.0.5/SpaCCI/R/database.R | 89 -------------------------- SpaCCI-1.0.5/SpaCCI/R/modeling.R | 37 ++++++---- SpaCCI-1.0.5/SpaCCI/R/run_SpaCCI.R | 4 - SpaCCI-1.0.5/SpaCCI/R/tutorial_example_data.R |only SpaCCI-1.0.5/SpaCCI/R/visiualization.R | 8 +- SpaCCI-1.0.5/SpaCCI/man/Find_regional_IDs.Rd | 4 - SpaCCI-1.0.5/SpaCCI/man/LR_database.Rd | 2 SpaCCI-1.0.5/SpaCCI/man/run_SpaCCI.Rd | 4 - 15 files changed, 54 insertions(+), 134 deletions(-)
Title: 3D Radial Visualization
Description: Creating 3D radial visualizations of multivariate data.
The package extends traditional radial coordinate visualization (RadViz) techniques
to three-dimensional space, enabling enhanced exploration and analysis of
high-dimensional datasets through interactive 3D plots. Zhu, Dai & Maitra (2022)
<doi:10.1080/10618600.2021.2020129>.
Author: Yifan Zhu [cre, aut],
Fan Dai [aut, ctb],
Ranjan Maitra [aut, ctb],
Niraj Kunwar [aut, ctb],
Gani Agadilov [aut, ctb]
Maintainer: Yifan Zhu <fannechu@gmail.com>
Diff between radviz3d versions 2.3.0 dated 2025-09-30 and 2.3.1 dated 2026-02-27
DESCRIPTION | 26 +++++++++++++------------- MD5 | 4 ++-- R/radviz3d.R | 10 +++++----- 3 files changed, 20 insertions(+), 20 deletions(-)
Title: Check Threatened Plant Species Status Against Peru's Supreme
Decree 043-2006-AG
Description: Provides tools to match plant species names against the official
threatened species list of Peru (Supreme Decree 043-2006-AG, 2006).
Implements a hierarchical matching pipeline with exact, fuzzy, and suffix
matching algorithms to handle naming variations and taxonomic changes.
Supports both the original 2006 nomenclature and updated taxonomic names,
allowing users to check protection status regardless of nomenclatural changes
since the decree's publication. Threat categories follow International Union for Conservation of Nature standards
(Critically Endangered, Endangered, Vulnerable, Near Threatened).
Author: Paul E. Santos Andrade [aut, cre]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
This is a re-admission after prior archival of version 0.2.2 dated 2025-11-24
Diff between peruflorads43 versions 0.2.2 dated 2025-11-24 and 0.2.3 dated 2026-02-27
DESCRIPTION | 6 MD5 | 22 - R/api_match.R | 114 ++--- R/fuzzy_match.R | 3 R/internal.R | 127 +++--- R/matching-pipeline.R | 11 R/threated_match.R | 58 -- inst/doc/threatenedperu_overview.html | 558 ++++++++++++++-------------- man/figures/logo.png |binary tests/testthat/test-consolidated-matching.R | 41 ++ tests/testthat/test-database-integrity.R | 4 tests/testthat/test-integration.R | 7 12 files changed, 481 insertions(+), 470 deletions(-)
Title: Network-Guided Penalized Regression (NetGreg)
Description: A network-guided penalized regression framework that integrates network characteristics from Gaussian graphical models with partial penalization, accounting for both network structure (hubs and non-hubs) and clinical covariates in high-dimensional omics data, including transcriptomics and proteomics. The full methodological details can be found in our publication by Ahn S and Oh EJ (2026) <doi:10.1093/bioadv/vbag038>.
Author: Seungjun Ahn [cre, aut] ,
Eun Jeong Oh [aut]
Maintainer: Seungjun Ahn <seungjun.ahn@mountsinai.org>
This is a re-admission after prior archival of version 0.0.2 dated 2025-06-03
Diff between NetGreg versions 0.0.2 dated 2025-06-03 and 0.0.4 dated 2026-02-27
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Fitting Generalized Linear Models Subject to Constraints
Description: Fits generalized linear models where the parameters are subject to linear constraints. The model is specified by giving a symbolic description of the linear predictor, a description of the error distribution, and a matrix of constraints on the parameters.
Author: Sanjay Chaudhuri [aut, cre],
Mark S. Handcock [aut],
Michael S. Rendall [ctb]
Maintainer: Sanjay Chaudhuri <schaudhuri2@unl.edu>
This is a re-admission after prior archival of version 0.3-1 dated 2018-12-12
Diff between glmc versions 0.3-1 dated 2018-12-12 and 0.4-1 dated 2026-02-27
DESCRIPTION | 32 +++++++++++++++++++++----------- MD5 | 10 +++++----- inst/CITATION | 36 ++++++++++++++++-------------------- man/glmc.Rd | 4 ++-- man/glmc.control.Rd | 4 ++-- man/glmc.summaries.Rd | 2 +- 6 files changed, 47 insertions(+), 41 deletions(-)
Title: Friendly Input-Output Analysis
Description: Simplifies the process of economic input-output analysis by combining
user-friendly interfaces with high-performance computation. It provides tools
for analyzing both single-region and multi-regional economic systems through a
hybrid architecture that pairs R's accessibility with Rust's computational efficiency.
Author: Alberson da Silva Miranda [aut, cre, cph] ,
Celso Bissoli Sessa [dtc]
Maintainer: Alberson da Silva Miranda <albersonmiranda@hotmail.com>
Diff between fio versions 0.1.6 dated 2025-04-06 and 1.0.0 dated 2026-02-27
fio-0.1.6/fio/R/br_2020.R |only fio-0.1.6/fio/data |only fio-0.1.6/fio/inst/extdata |only fio-0.1.6/fio/man/br_2020.Rd |only fio-0.1.6/fio/man/figures/example_leontief_inverse.png |only fio-1.0.0/fio/DESCRIPTION | 33 fio-1.0.0/fio/MD5 | 76 - fio-1.0.0/fio/NAMESPACE | 2 fio-1.0.0/fio/NEWS.md | 18 fio-1.0.0/fio/R/download_wiod.R |only fio-1.0.0/fio/R/extendr-wrappers.R | 127 +- fio-1.0.0/fio/R/helpers.R | 10 fio-1.0.0/fio/R/import_iom.R | 45 fio-1.0.0/fio/R/miom.R |only fio-1.0.0/fio/R/r6.R | 248 +++++ fio-1.0.0/fio/README.md | 289 +++++- fio-1.0.0/fio/build/partial.rdb |binary fio-1.0.0/fio/build/vignette.rds |binary fio-1.0.0/fio/cleanup |only fio-1.0.0/fio/cleanup.win |only fio-1.0.0/fio/inst/doc/getting_started.Rmd | 2 fio-1.0.0/fio/inst/doc/getting_started.html | 184 +-- fio-1.0.0/fio/man/download_wiod.Rd |only fio-1.0.0/fio/man/import_element.Rd | 26 fio-1.0.0/fio/man/iom.Rd | 104 ++ fio-1.0.0/fio/man/miom.Rd |only fio-1.0.0/fio/src/Makevars.in | 16 fio-1.0.0/fio/src/Makevars.win.in | 12 fio-1.0.0/fio/src/rust/Cargo.lock | 791 +++++++++-------- fio-1.0.0/fio/src/rust/Cargo.toml | 19 fio-1.0.0/fio/src/rust/src/extraction.rs | 26 fio-1.0.0/fio/src/rust/src/ghosh.rs | 2 fio-1.0.0/fio/src/rust/src/influence.rs | 2 fio-1.0.0/fio/src/rust/src/leontief.rs | 19 fio-1.0.0/fio/src/rust/src/lib.rs | 81 - fio-1.0.0/fio/src/rust/src/linkages.rs | 68 - fio-1.0.0/fio/src/rust/src/multipliers.rs | 193 ++-- fio-1.0.0/fio/src/rust/src/parallel.rs |only fio-1.0.0/fio/src/rust/vendor-config.toml | 4 fio-1.0.0/fio/src/rust/vendor.tar.xz |binary fio-1.0.0/fio/tests/testthat/_snaps |only fio-1.0.0/fio/tests/testthat/test-computations.R | 5 fio-1.0.0/fio/tests/testthat/test-iom.R | 137 ++ fio-1.0.0/fio/tests/testthat/test-miom.R |only fio-1.0.0/fio/tools/config.R | 45 fio-1.0.0/fio/vignettes/getting_started.Rmd | 2 46 files changed, 1660 insertions(+), 926 deletions(-)
Title: China Map Data from AutoNavi Map
Description: According to the codes and names of county-level and above administrative divisions released in 2022 by the Ministry of Civil Affairs of the People's Republic of China, the online vector map files were retrieved from the website (available at: <http://datav.aliyun.com/portal/school/atlas/area_selector>). This study was supported by the National Natural Science Foundation of China (NSFC, Grant No. 42205177).
Author: Panfeng Zhang [aut, cre]
Maintainer: Panfeng Zhang <zhangpf08@163.com>
Diff between cnmap versions 0.1.1 dated 2025-09-12 and 0.1.2 dated 2026-02-27
DESCRIPTION | 8 MD5 | 16 NEWS.md | 4 build/vignette.rds |binary data/ad.rda |binary inst/doc/Introduction.R | 30 inst/doc/Introduction.Rmd | 66 + inst/doc/Introduction.html | 1867 +++++++++++++++++++++++++++++++++++++-------- vignettes/Introduction.Rmd | 66 + 9 files changed, 1676 insertions(+), 381 deletions(-)
Title: Access and Analysis of Brazilian CNEFE Address Data
Description: Download, cache and read municipality-level address data from the
Cadastro Nacional de Enderecos para Fins Estatisticos (CNEFE) of the 2022
Brazilian Census, published by the Instituto Brasileiro de Geografia e
Estatistica (IBGE)
<https://ftp.ibge.gov.br/Cadastro_Nacional_de_Enderecos_para_Fins_Estatisticos/>.
Beyond data access, provides spatial aggregation of addresses, computation
of land-use mix indices, and dasymetric interpolation of census tract
variables using CNEFE dwelling points as ancillary data. Results can be
produced on 'H3' hexagonal grids or user-supplied polygons, and heavy
operations leverage a 'DuckDB' backend with extensions for fast,
in-process execution.
Author: Jorge Ubirajara Pedreira Junior [aut, cre, cph] ,
Bruno Mioto [aut],
Kaio Cunha Pedreira [ctb]
Maintainer: Jorge Ubirajara Pedreira Junior <jorge.ubirajara@ufba.br>
This is a re-admission after prior archival of version 0.2.1 dated 2026-02-13
Diff between cnefetools versions 0.2.1 dated 2026-02-13 and 0.2.2 dated 2026-02-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 12 ++++++++++++ README.md | 4 ++++ 4 files changed, 22 insertions(+), 6 deletions(-)
Title: Case Based Reasoning
Description: Case-based reasoning is a problem-solving methodology that involves solving a new problem by referring to the solution of a similar problem in a large set of previously solved problems. The key aspect of Case Based Reasoning is to determine the problem that "most closely" matches the new problem at hand. This is achieved by defining a family of distance functions and using these distance functions as parameters for local averaging regression estimates of the final result. The optimal distance function is chosen based on a specific error measure used in regression estimation. This approach allows for efficient problem-solving by leveraging past experiences and adapting solutions from similar cases. The underlying concept is inspired by the work of Dippon J. et al. (2002) <doi:10.1016/S0167-9473(02)00058-0>.
Author: Simon Mueller [aut, cre],
PD Dr. Juergen Dippon [ctb]
Maintainer: Simon Mueller <simon.mueller@muon-stat.com>
Diff between CaseBasedReasoning versions 0.4 dated 2026-02-26 and 0.4.1 dated 2026-02-27
CaseBasedReasoning-0.4.1/CaseBasedReasoning/DESCRIPTION | 12 CaseBasedReasoning-0.4.1/CaseBasedReasoning/LICENSE | 2 CaseBasedReasoning-0.4.1/CaseBasedReasoning/MD5 | 39 - CaseBasedReasoning-0.4.1/CaseBasedReasoning/NEWS.md | 26 CaseBasedReasoning-0.4.1/CaseBasedReasoning/R/distance.R | 8 CaseBasedReasoning-0.4.1/CaseBasedReasoning/R/pkgsExports.R | 1 CaseBasedReasoning-0.4.1/CaseBasedReasoning/inst/doc/distance_measures.html | 68 - CaseBasedReasoning-0.4.1/CaseBasedReasoning/inst/doc/distance_measures.rmd | 43 - CaseBasedReasoning-0.4.1/CaseBasedReasoning/inst/doc/get_started.R | 19 CaseBasedReasoning-0.4.1/CaseBasedReasoning/inst/doc/get_started.html | 373 ++-------- CaseBasedReasoning-0.4.1/CaseBasedReasoning/inst/doc/get_started.rmd | 113 --- CaseBasedReasoning-0.4.1/CaseBasedReasoning/man/depth_distance.Rd | 2 CaseBasedReasoning-0.4.1/CaseBasedReasoning/man/edges_between_terminal_nodes.Rd | 2 CaseBasedReasoning-0.4.1/CaseBasedReasoning/man/proximity_distance.Rd | 2 CaseBasedReasoning-0.4.1/CaseBasedReasoning/man/weighted_distance.Rd | 2 CaseBasedReasoning-0.4.1/CaseBasedReasoning/src/ranger/RangerForestNodeDistance.h | 4 CaseBasedReasoning-0.4.1/CaseBasedReasoning/src/ranger/rangerForest.h | 4 CaseBasedReasoning-0.4.1/CaseBasedReasoning/tests/testthat/test-RFDistance.R | 33 CaseBasedReasoning-0.4.1/CaseBasedReasoning/vignettes/distance_measures.rmd | 43 - CaseBasedReasoning-0.4.1/CaseBasedReasoning/vignettes/get_started.rmd | 113 --- CaseBasedReasoning-0.4/CaseBasedReasoning/README.md |only 21 files changed, 288 insertions(+), 621 deletions(-)
More information about CaseBasedReasoning at CRAN
Permanent link
Title: Provide the 'x13ashtml' Seasonal Adjustment Binary
Description: The US Census Bureau provides a seasonal adjustment program now
called 'X-13ARIMA-SEATS' building on both earlier programs called X-11 and
X-12 as well as the SEATS program by the Bank of Spain. The US Census Bureau
offers both source and binary versions -- which this package integrates for
use by other R packages.
Author: Dirk Eddelbuettel [aut, cre] ,
Christoph Sax [aut] ,
Kirill Mueller [ctb] ,
Jeroen Ooms [ctb] ,
Michael Antonov [ctb]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between x13binary versions 1.1.61.1 dated 2025-08-20 and 1.1.61.2 dated 2026-02-27
ChangeLog | 16 ++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/Makefile | 4 +++- src/Makefile.win | 3 ++- 5 files changed, 29 insertions(+), 10 deletions(-)
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 3.0.15 dated 2026-02-26 and 3.0.17 dated 2026-02-27
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++-- inst/CITATION | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Run Predictions Inside the Database
Description: It parses a fitted 'R' model object, and returns a formula in
'Tidy Eval' code that calculates the predictions. It works with
several databases back-ends because it leverages 'dplyr' and 'dbplyr'
for the final 'SQL' translation of the algorithm. It currently
supports lm(), glm(), randomForest(), ranger(), rpart(), earth(),
xgb.Booster.complete(), lgb.Booster(), catboost.Model(), cubist(), and
ctree() models.
Author: Emil Hvitfeldt [aut, cre],
Edgar Ruiz [aut],
Max Kuhn [aut]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between tidypredict versions 1.0.1 dated 2025-12-13 and 1.1.0 dated 2026-02-27
DESCRIPTION | 20 MD5 | 169 ++- NAMESPACE | 26 NEWS.md | 56 + R/acceptable.R | 2 R/misc.R | 22 R/model-catboost.R |only R/model-cubist.R | 39 R/model-earth.R | 45 R/model-glmnet.R | 105 + R/model-lightgbm.R |only R/model-lm.R | 32 R/model-partykit.R | 271 ++-- R/model-ranger.R | 377 +++++- R/model-rf.R | 337 ++++-- R/model-rpart.R |only R/model-xgboost.R | 429 +++++-- R/parsemodel.R | 51 R/predict-fit.R | 44 R/tidymodels.R | 6 R/tidypredict_test.R | 388 +++++-- R/tree-nested.R |only R/tree.R | 101 + README.md | 27 build/vignette.rds |binary inst/doc/catboost.R |only inst/doc/catboost.Rmd |only inst/doc/catboost.html |only inst/doc/cubist.Rmd | 5 inst/doc/cubist.html | 10 inst/doc/float-precision.Rmd |only inst/doc/float-precision.html |only inst/doc/lightgbm.R |only inst/doc/lightgbm.Rmd |only inst/doc/lightgbm.html |only inst/doc/ranger.html | 47 inst/doc/rf.html | 157 +- inst/doc/rpart.R |only inst/doc/rpart.Rmd |only inst/doc/rpart.html |only inst/doc/sql.html | 4 inst/doc/tree-internals.R |only inst/doc/tree-internals.Rmd |only inst/doc/tree-internals.html |only inst/doc/xgboost.Rmd | 2 inst/doc/xgboost.html | 253 ++-- man/build_nested_node.Rd |only man/build_nested_split_condition.Rd |only man/dot-build_case_when_tree.Rd |only man/dot-build_linear_pred.Rd |only man/dot-build_nested_case_when_tree.Rd |only man/dot-extract_catboost_trees.Rd |only man/dot-extract_earth_multiclass.Rd |only man/dot-extract_glmnet_multiclass.Rd |only man/dot-extract_lgb_trees.Rd |only man/dot-extract_partykit_classprob.Rd | 3 man/dot-extract_ranger_classprob.Rd |only man/dot-extract_ranger_trees.Rd |only man/dot-extract_rf_classprob.Rd |only man/dot-extract_rf_trees.Rd |only man/dot-extract_rpart_classprob.Rd |only man/dot-extract_xgb_trees.Rd | 3 man/dot-partykit_tree_info_full.Rd |only man/dot-rpart_tree_info_full.Rd |only man/generate_nested_case_when_tree.Rd |only man/parse_model.Rd | 57 - man/set_catboost_categories.Rd |only man/tidypredict-package.Rd | 2 tests/testthat/_snaps/3.1.3.1 |only tests/testthat/_snaps/3.2.0.1 |only tests/testthat/_snaps/model-catboost.md |only tests/testthat/_snaps/model-earth.md | 26 tests/testthat/_snaps/model-glm.md | 8 tests/testthat/_snaps/model-glmnet.md | 35 tests/testthat/_snaps/model-lightgbm.md |only tests/testthat/_snaps/model-partykit.md | 10 tests/testthat/_snaps/model-ranger.md | 66 + tests/testthat/_snaps/model-rf.md | 66 + tests/testthat/_snaps/model-rpart.md |only tests/testthat/_snaps/model-xgboost.md | 150 -- tests/testthat/_snaps/predict-interval.md |only tests/testthat/_snaps/tidypredict_test.md |only tests/testthat/_snaps/tree.md | 4 tests/testthat/backwards-compat |only tests/testthat/test-acceptable.R | 22 tests/testthat/test-model-catboost.R |only tests/testthat/test-model-earth.R | 160 ++ tests/testthat/test-model-glm.R | 14 tests/testthat/test-model-glmnet.R | 239 ++++ tests/testthat/test-model-lightgbm.R |only tests/testthat/test-model-lm.R | 89 + tests/testthat/test-model-partykit.R | 134 ++ tests/testthat/test-model-ranger.R | 549 +++++++++ tests/testthat/test-model-rf.R | 246 ++++ tests/testthat/test-model-rpart.R |only tests/testthat/test-model-xgboost.R | 1661 +++++++++++++++++++++++++----- tests/testthat/test-predict-fit.R |only tests/testthat/test-predict-interval.R |only tests/testthat/test-tidypredict_test.R | 186 +++ tests/testthat/test-tree-nested.R |only tests/testthat/test-tree.R | 105 + vignettes/catboost.Rmd |only vignettes/cubist.Rmd | 5 vignettes/float-precision.Rmd |only vignettes/lightgbm.Rmd |only vignettes/rpart.Rmd |only vignettes/tree-internals.Rmd |only vignettes/xgboost.Rmd | 2 108 files changed, 5588 insertions(+), 1279 deletions(-)
Title: Parametric Time to Event Analysis
Description: Performs maximum likelihood based estimation and inference on time to event data, possibly subject to non-informative right censoring. FitParaSurv() provides maximum likelihood estimates of model parameters and distributional characteristics, including the mean, median, variance, and restricted mean. CompParaSurv() compares the mean, median, and restricted mean survival experiences of two treatment groups. Candidate distributions include the exponential, gamma, generalized gamma, log-normal, and Weibull.
Author: Zachary McCaw [aut, cre]
Maintainer: Zachary McCaw <zmccaw@alumni.harvard.edu>
Diff between Temporal versions 0.3.0.1 dated 2023-09-23 and 0.3.0.2 dated 2026-02-27
Temporal-0.3.0.1/Temporal/vignettes/Temporal_cache |only Temporal-0.3.0.2/Temporal/DESCRIPTION | 18 + Temporal-0.3.0.2/Temporal/MD5 | 95 +++------- Temporal-0.3.0.2/Temporal/R/Class.R | 30 ++- Temporal-0.3.0.2/Temporal/R/Comparison.R | 2 Temporal-0.3.0.2/Temporal/R/DataGen.R | 2 Temporal-0.3.0.2/Temporal/R/Exponential.R | 23 -- Temporal-0.3.0.2/Temporal/R/Fitting.R | 2 Temporal-0.3.0.2/Temporal/R/Gamma.R | 29 --- Temporal-0.3.0.2/Temporal/R/GenGamma.R | 30 --- Temporal-0.3.0.2/Temporal/R/Inputs.R | 42 ++-- Temporal-0.3.0.2/Temporal/R/LogLik.R | 2 Temporal-0.3.0.2/Temporal/R/LogNormal.R | 35 --- Temporal-0.3.0.2/Temporal/R/NewtonRaphson.R | 2 Temporal-0.3.0.2/Temporal/R/RMST.R | 34 --- Temporal-0.3.0.2/Temporal/R/SurvFunctions.R | 2 Temporal-0.3.0.2/Temporal/R/Temporal-package.R | 10 + Temporal-0.3.0.2/Temporal/R/Weibull.R | 41 ---- Temporal-0.3.0.2/Temporal/build/vignette.rds |binary Temporal-0.3.0.2/Temporal/inst/doc/Temporal.R | 18 - Temporal-0.3.0.2/Temporal/inst/doc/Temporal.Rmd | 14 - Temporal-0.3.0.2/Temporal/man/CheckInfoPD.Rd |only Temporal-0.3.0.2/Temporal/man/DefaultParam.Rd | 2 Temporal-0.3.0.2/Temporal/man/FitParaSurv.Rd | 2 Temporal-0.3.0.2/Temporal/man/GenData.Rd | 2 Temporal-0.3.0.2/Temporal/man/GenGammaShape.Rd | 2 Temporal-0.3.0.2/Temporal/man/SurvFunc.Rd | 2 Temporal-0.3.0.2/Temporal/man/Temporal-package.Rd | 17 + Temporal-0.3.0.2/Temporal/tests/testthat/test-comparison.R | 20 +- Temporal-0.3.0.2/Temporal/tests/testthat/test-exponential.R |only Temporal-0.3.0.2/Temporal/tests/testthat/test-gendata.R |only Temporal-0.3.0.2/Temporal/tests/testthat/test-inputs.R | 95 +++++----- Temporal-0.3.0.2/Temporal/tests/testthat/test-parameter-recovery.R |only Temporal-0.3.0.2/Temporal/tests/testthat/test-weibull.R | 3 Temporal-0.3.0.2/Temporal/vignettes/Temporal.Rmd | 14 - Temporal-0.3.0.2/Temporal/vignettes/Temporal.html | 81 ++++---- 36 files changed, 307 insertions(+), 364 deletions(-)
Title: Structural Equation Modeling and Confirmatory Network Analysis
Description: Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.
Author: Sacha Epskamp [aut, cre]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between psychonetrics versions 0.13.2 dated 2025-10-22 and 0.15 dated 2026-02-27
DESCRIPTION | 15 MD5 | 277 +++++---- NAMESPACE | 18 NEWS | 377 ++++++++++++ R/00_codeOrganization.R | 14 R/01_classes.R | 8 R/02_algebrahelpers_checkJacobian.R | 28 R/02_algebrahelpers_expectedmodel.R | 15 R/03_modelformation_adjust_p_values.R | 4 R/03_modelformation_generateParameterTable.R | 4 R/03_modelformation_matrixSetup_delta.R | 6 R/03_modelformation_matrixSetup_lambda.R | 69 -- R/03_modelformation_samplestats_norawts.R | 55 + R/03_modelformation_standardize_input.R |only R/04_generalFit_fitfunction.R | 19 R/04_generalFit_gradient.R | 36 + R/04_generalfit_FisherInformation.R | 12 R/04_generalfit_impliedModel.R | 10 R/04_generalfit_prepareModel.R | 14 R/04_generalfit_proximal_gradient.R |only R/06_ULS_expectedHessian.R | 2 R/06_ULS_fitfunction.R | 2 R/06_ULS_gradient.R | 2 R/06_weightsMatrix.R | 28 R/08_outputHelpers_logo.R | 4 R/09_PenMLestimator_fit_FIML_Gauss.R |only R/09_PenMLestimator_fit_Gauss.R |only R/09_PenMLestimator_fit_Ising.R |only R/09_PenMLestimator_penalty_helpers.R |only R/15_lvm_derivatives.R | 158 +++-- R/15_lvm_identify.R | 5 R/15_lvm_implied.R | 18 R/15_lvm_prepare.R | 11 R/16_var1_implied.R | 1 R/21_Ising_implied.R | 17 R/23_meta_lvm_derivatives.R |only R/23_meta_lvm_implied.R |only R/23_meta_lvm_prepare.R |only R/24_meta_var1_derivatives.R |only R/24_meta_var1_implied.R |only R/24_meta_var1_prepare.R |only R/RcppExports.R | 52 + R/a_models_Ising.R | 28 R/a_models_dlvm1.R | 367 ++++++++++-- R/a_models_lvm.R | 613 +++++++++++++++------ R/a_models_meta_lvm.R |only R/a_models_meta_var1.R |only R/a_models_meta_varcov.R | 43 + R/a_models_ml_lvm.R | 4 R/a_models_ml_tsdlvm1.R | 178 ------ R/a_models_ml_tslvgvar.R | 31 - R/a_models_panelgvar.R | 101 ++- R/a_models_tsdlvm1.R | 93 ++- R/a_models_var1.R | 93 ++- R/a_models_varcov.R | 103 +++ R/b_modelexpansions_addMIs.R | 4 R/b_modelexpansions_addSEs.R | 34 - R/b_modelexpansions_addfit.R | 290 +++++++++ R/b_modelexpansions_identify.R | 5 R/c_runmodel.R | 249 +++++++- R/e_modelmodifications_find_penalized_lambda.R |only R/e_modelmodifications_partialprune.R | 4 R/f_conveneince_setoptimizer.R | 2 R/f_convenience_CIplot.R | 24 R/f_convenience_MIs.R | 6 R/f_convenience_defaultpenalize.R |only R/f_convenience_ergodicity.R | 6 R/f_convenience_parameters.R | 21 R/f_convenience_penalize.R |only R/f_convenience_printMethod.R | 59 +- R/f_convenience_refit.R |only R/f_convenience_write_psychonetrics.R |only R/g_simulations_loop_psychonetrics.R |only build/partial.rdb |binary data/NA2020.RData |only inst |only man/Ising.Rd | 22 man/NA2020.Rd |only man/convenience.Rd | 23 man/dlvm1_family.Rd | 61 +- man/find_penalized_lambda.Rd |only man/loop_psychonetrics.Rd |only man/lvm_family.Rd | 54 + man/meta_lvm.Rd |only man/meta_var1.Rd |only man/meta_varcov.Rd | 23 man/ml_tsdlvm1.Rd | 4 man/penalize.Rd |only man/runmodel.Rd | 18 man/tsdlvm1_family.Rd | 30 - man/var1_family.Rd | 31 - man/varcov_family.Rd | 46 + man/write_psychonetrics.Rd |only src/02_algebragelpers_kronecker.h | 11 src/02_algebrahelpers_kronecker.cpp | 40 + src/03_modelformation_formModelMatrices_direct.cpp |only src/03_modelformation_formModelMatrices_direct.h |only src/04_generalFit_FisherInformation_cpp.cpp | 12 src/04_generalFit_gradient_cpp.cpp | 70 +- src/04_generalFit_implied_and_prepare.h | 3 src/04_generalfit_fitfunction_cpp.cpp | 38 - src/04_generalfit_implied_and_prepare.cpp | 162 +++-- src/04_generalfit_optimWorkspace.cpp |only src/04_generalfit_optimWorkspace.h |only src/04_generalfit_psychonetrics_BFGS.cpp | 3 src/04_generalfit_psychonetrics_LBFGSB.cpp |only src/06_ULS_expectedHessian_cpp.cpp | 2 src/06_ULS_fitfunction_cpp.cpp | 25 src/06_ULS_gradient_cpp.cpp | 25 src/09_PenMLestimator_fit_FIML_Gauss_cpp.cpp |only src/09_PenMLestimator_fit_FIML_Gauss_cpp.h |only src/09_PenMLestimator_fit_Gauss_cpp.cpp |only src/09_PenMLestimator_fit_Gauss_cpp.h |only src/09_PenMLestimator_fit_Ising_cpp.cpp |only src/09_PenMLestimator_fit_Ising_cpp.h |only src/09_PenMLestimator_penalty_helpers_cpp.cpp |only src/09_PenMLestimator_penalty_helpers_cpp.h |only src/14_varcov_implied_cpp.cpp | 49 - src/14_varcov_implied_cpp.h | 7 src/14_varcov_prepare_cpp.cpp | 62 -- src/15_lvm_derivatives_cpp.cpp | 252 +++++--- src/15_lvm_implied_cpp.cpp | 95 ++- src/15_lvm_implied_cpp.h | 7 src/15_lvm_prepare_cpp.cpp | 62 -- src/16_var1_derivatives_cpp.h | 39 + src/16_var1_implied_cpp.cpp | 37 - src/16_var1_implied_cpp.h | 6 src/16_var1_prepare_cpp.cpp | 62 -- src/18_dlvm1_derivatives_cpp.cpp | 134 +++- src/18_dlvm1_implied_cpp.cpp | 42 - src/18_dlvm1_implied_cpp.h | 6 src/18_dlvm1_prepare_cpp.cpp | 62 -- src/19_tsdlvm1_implied_cpp.cpp | 48 - src/19_tsdlvm1_implied_cpp.h | 6 src/19_tsdlvm1_prepare_cpp.cpp | 62 -- src/20_meta_varcov_implied.cpp | 110 +-- src/20_meta_varcov_implied_cpp.h | 6 src/20_meta_varcov_prepare_cpp.cpp | 60 -- src/21_Ising_expectedHessian.cpp | 12 src/21_Ising_implied_cpp.cpp | 78 +- src/21_Ising_implied_cpp.h | 6 src/21_Ising_prepare_cpp.cpp | 57 - src/22_ml_lvm_implied_cpp.cpp | 44 - src/22_ml_lvm_implied_cpp.h | 6 src/22_ml_lvm_prepare_cpp.cpp | 62 -- src/23_meta_lvm_derivatives_cpp.cpp |only src/23_meta_lvm_derivatives_cpp.h |only src/23_meta_lvm_implied.cpp |only src/23_meta_lvm_implied_cpp.h |only src/23_meta_lvm_prepare_cpp.cpp |only src/23_meta_lvm_prepare_cpp.h |only src/24_meta_var1_derivatives_cpp.cpp |only src/24_meta_var1_derivatives_cpp.h |only src/24_meta_var1_implied.cpp |only src/24_meta_var1_implied_cpp.h |only src/24_meta_var1_prepare_cpp.cpp |only src/24_meta_var1_prepare_cpp.h |only src/Makevars | 8 src/Makevars.win | 3 src/RcppExports.cpp | 165 +++++ src/b_modelexpansions_addSEs_cpp.cpp | 62 +- 161 files changed, 4296 insertions(+), 1763 deletions(-)
Title: A General Framework for Latent Classify and Profile Analysis
Description: A unified latent class modeling framework that encompasses both latent class analysis (LCA) and latent profile analysis (LPA), offering a one-stop solution for latent class modeling. It implements state-of-the-art parameter estimation methods, including the expectation–maximization (EM) algorithm, neural network estimation (NNE; requires users to have 'Python' and its dependent libraries installed on their computer), and integration with 'Mplus' (requires users to have 'Mplus' installed on their computer). In addition, it provides commonly used model fit indices such as the Akaike information criterion (AIC) and Bayesian information criterion (BIC), as well as classification accuracy measures such as entropy. The package also includes fully functional likelihood ratio tests (LRT) and bootstrap likelihood ratio tests (BLRT) to facilitate model comparison, along with bootstrap-based and observed information matrix-based standard error estimation. Furthermore, it supports the standard thr [...truncated...]
Author: Haijiang Qin [aut, cre, cph] ,
Lei Guo [aut, cph]
Maintainer: Haijiang Qin <haijiang133@outlook.com>
Diff between LCPA versions 1.0.0 dated 2026-01-22 and 1.0.1 dated 2026-02-27
LCPA-1.0.0/LCPA/tests/main_LCA.R |only LCPA-1.0.0/LCPA/tests/main_LPA.R |only LCPA-1.0.1/LCPA/DESCRIPTION | 8 +- LCPA-1.0.1/LCPA/MD5 | 32 +++++----- LCPA-1.0.1/LCPA/NEWS.md | 6 ++ LCPA-1.0.1/LCPA/R/LCA.R | 25 ++++---- LCPA-1.0.1/LCPA/R/LCPA.R | 6 +- LCPA-1.0.1/LCPA/R/LPA.R | 22 ++++--- LCPA-1.0.1/LCPA/R/LRT.test.Bootstrap.R | 2 LCPA-1.0.1/LCPA/R/LTA.R | 6 +- LCPA-1.0.1/LCPA/R/S3print.R | 2 LCPA-1.0.1/LCPA/inst/python/Net_LCA.py | 74 ++++++++++--------------- LCPA-1.0.1/LCPA/inst/python/Net_LPA.py | 76 ++++++++++---------------- LCPA-1.0.1/LCPA/man/LCA.Rd | 3 - LCPA-1.0.1/LCPA/man/LCPA.Rd | 3 - LCPA-1.0.1/LCPA/man/LPA.Rd | 3 - LCPA-1.0.1/LCPA/man/LTA.Rd | 3 - LCPA-1.0.1/LCPA/tests/main_LCA_attention_10.R |only LCPA-1.0.1/LCPA/tests/main_LPA_attention_10.R |only 19 files changed, 130 insertions(+), 141 deletions(-)
Title: A Shiny App for Design of Experiments in Life Sciences
Description: A shiny design of experiments (DOE) app that aids in the creation of traditional,
un-replicated, augmented and partially-replicated designs applied to agriculture,
plant breeding, forestry, animal and biological sciences.
Author: Didier Murillo [cre, aut],
Salvador Gezan [aut],
Ana Heilman [ctb],
Thomas Walk [ctb],
Johan Aparicio [ctb],
Matthew Seefeldt [ctb],
Jean-Marc Montpetit [ctb],
Richard Horsley [ctb],
North Dakota State University [cph]
Maintainer: Didier Murillo <didier.murilloflorez@ndsu.edu>
Diff between FielDHub versions 1.4.2 dated 2024-07-26 and 1.5.0 dated 2026-02-27
DESCRIPTION | 8 MD5 | 96 ++-- NEWS.md | 3 R/app_ui.R | 4 R/fct_RCDB_augmented.R | 722 +++++++++++++++++++++++++---------- R/fct_diagonal_arrangement.R | 45 +- R/fct_do_optim.R | 13 R/fct_optimized_arrangement.R | 58 ++ R/fct_partially_replicated.R | 32 + R/fct_strip_plot.R | 117 +++-- R/globals.R | 2 R/mod_Optim.R | 2 R/mod_RCBD_augmented.R | 733 +++++++++++++++--------------------- R/mod_STRIPD.R | 22 - R/mod_multi_loc_prep.R | 19 R/mod_pREPS.R | 18 R/run_app.R | 14 R/utils_pREP.R | 152 ++++--- R/utils_plot_RCBD.R | 493 ++++++++++++++---------- R/utils_plot_diagonal_arrangement.R | 174 +++++--- R/utils_swap_functions.R | 537 +++++++++++++++----------- build/vignette.rds |binary inst/doc/RCBD_augmented.R | 12 inst/doc/RCBD_augmented.html | 47 +- inst/doc/alpha_lattice.R | 12 inst/doc/alpha_lattice.html | 47 +- inst/doc/diagonal_arrangement.R | 18 inst/doc/diagonal_arrangement.html | 87 ++-- inst/doc/full_factorial.R | 12 inst/doc/full_factorial.html | 5 inst/doc/multi_location_prep.R | 14 inst/doc/multi_location_prep.html | 147 +++---- inst/doc/partially_replicated.R | 12 inst/doc/partially_replicated.html | 113 ++--- inst/doc/rcbd.R | 12 inst/doc/rcbd.html | 5 inst/doc/row_column.R | 6 inst/doc/row_column.html | 45 +- inst/doc/split_plot.R | 12 inst/doc/split_plot.html | 5 man/RCBD_augmented.Rd | 3 man/multi_location_prep.Rd | 4 man/optimized_arrangement.Rd | 5 man/partially_replicated.Rd | 12 man/run_app.Rd | 4 man/strip_plot.Rd | 58 +- man/swap_pairs.Rd | 53 +- tests/testthat/test_RCBD_layouts.R |only tests/testthat/test_prep.R |only vignettes/news/fieldhub-1-2-0.Rmd | 2 50 files changed, 2398 insertions(+), 1618 deletions(-)
Title: Emoji and Font Awesome in Graphics
Description: An implementation of using emoji and fontawesome for using in both
base and 'ggplot2' graphics.
Author: Guangchuang Yu [aut, cre] ,
Claus Thorn Ekstroem [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between emojifont versions 0.5.5 dated 2021-04-20 and 0.6.0 dated 2026-02-27
emojifont-0.5.5/emojifont/inst/doc/emojifont.Rmd |only emojifont-0.5.5/emojifont/inst/emoji_fonts/EmojiOne.ttf |only emojifont-0.5.5/emojifont/inst/emoji_fonts/OpenSansEmoji.ttf |only emojifont-0.5.5/emojifont/vignettes/emojifont.Rmd |only emojifont-0.6.0/emojifont/DESCRIPTION | 21 emojifont-0.6.0/emojifont/MD5 | 60 emojifont-0.6.0/emojifont/NAMESPACE | 41 emojifont-0.6.0/emojifont/NEWS | 120 - emojifont-0.6.0/emojifont/NEWS.md | 31 emojifont-0.6.0/emojifont/R/emojifont.R | 320 ++-- emojifont-0.6.0/emojifont/R/fontawesome.R | 214 +- emojifont-0.6.0/emojifont/R/geom_emoji.R | 86 - emojifont-0.6.0/emojifont/R/sysdata.rda |binary emojifont-0.6.0/emojifont/R/utilities.R |only emojifont-0.6.0/emojifont/R/zzz.R | 17 emojifont-0.6.0/emojifont/README.md |only emojifont-0.6.0/emojifont/build/vignette.rds |binary emojifont-0.6.0/emojifont/inst/doc/emojifont.R | 105 - emojifont-0.6.0/emojifont/inst/doc/emojifont.html | 798 ++++++----- emojifont-0.6.0/emojifont/inst/doc/emojifont.qmd |only emojifont-0.6.0/emojifont/inst/emoji_fonts/OpenMoji.ttf |only emojifont-0.6.0/emojifont/inst/inst |only emojifont-0.6.0/emojifont/inst/scripts |only emojifont-0.6.0/emojifont/man/emoji.Rd | 46 emojifont-0.6.0/emojifont/man/fontawesome.Rd | 46 emojifont-0.6.0/emojifont/man/geom_emoji.Rd | 80 - emojifont-0.6.0/emojifont/man/geom_fontawesome.Rd | 74 - emojifont-0.6.0/emojifont/man/list.emojifonts.Rd | 34 emojifont-0.6.0/emojifont/man/load.emojifont.Rd | 34 emojifont-0.6.0/emojifont/man/load.fontawesome.Rd | 34 emojifont-0.6.0/emojifont/man/sample_emoji.Rd | 50 emojifont-0.6.0/emojifont/man/sample_fontawesome.Rd | 50 emojifont-0.6.0/emojifont/man/search_emoji.Rd | 48 emojifont-0.6.0/emojifont/man/search_fontawesome.Rd | 44 emojifont-0.6.0/emojifont/vignettes/emojifont.bib | 24 emojifont-0.6.0/emojifont/vignettes/emojifont.qmd |only 36 files changed, 1306 insertions(+), 1071 deletions(-)
Title: Extract Text from Microsoft Word Documents
Description: Wraps the 'AntiWord' utility to extract text from Microsoft Word
documents. The utility only supports the old 'doc' format, not the new xml
based 'docx' format. Use the 'xml2' package to read the latter.
Author: Jeroen Ooms [aut, cre] ,
Adri van Os [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between antiword versions 1.3.4 dated 2024-10-04 and 1.3.5 dated 2026-02-27
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 3 +++ src/Makevars | 5 ++++- 4 files changed, 14 insertions(+), 8 deletions(-)
Title: Geographical Detectors for Assessing Spatial Factors
Description: Geographical detectors for measuring spatial stratified heterogeneity,
as described in Jinfeng Wang (2010) <doi:10.1080/13658810802443457> and
Jinfeng Wang (2016) <doi:10.1016/j.ecolind.2016.02.052>. Includes the
optimal discretization of continuous data, four primary functions of
geographical detectors, comparison of size effects of spatial unit and
the visualizations of results. To use the package and to refer the
descriptions of the package, methods and case datasets, please cite
Yongze Song (2020) <doi:10.1080/15481603.2020.1760434>. The model has
been applied in factor exploration of road performance and multi-scale
spatial segmentation for network data, as described in
Yongze Song (2018) <doi:10.3390/rs10111696> and
Yongze Song (2020) <doi:10.1109/TITS.2020.3001193>, respectively.
Author: Yongze Song [aut, cph] ,
Wenbo Lyu [aut, cre]
Maintainer: Wenbo Lyu <lyu.geosocial@gmail.com>
Diff between GD versions 10.8 dated 2024-11-20 and 10.9 dated 2026-02-27
DESCRIPTION | 18 +++++++++--------- MD5 | 18 +++++++++--------- NEWS.md | 26 +++++++++++++++----------- R/zzz.R | 2 +- README.md | 12 +++++++----- build/vignette.rds |binary inst/doc/GD.R | 4 ++-- inst/doc/GD.Rmd | 6 +++--- inst/doc/GD.html | 12 ++++++------ vignettes/GD.Rmd | 6 +++--- 10 files changed, 55 insertions(+), 49 deletions(-)
Title: Simply Caching R Objects
Description: Provides intuitive functions for caching R objects, encouraging
reproducible, restartable, and distributed R analysis. The user selects a
location to store caches, and then provides nothing more than a cache name
and instructions (R code) for how to produce the R object. Also
provides some advanced options like environment assignments, recreating or
reloading caches, and cluster compute bindings (using the 'batchtools'
package) making it flexible enough for use in large-scale data analysis
projects.
Author: VP Nagraj [aut],
Nathan Sheffield [aut, cre]
Maintainer: Nathan Sheffield <nathan@code.databio.org>
Diff between simpleCache versions 0.4.2 dated 2021-04-17 and 0.4.3 dated 2026-02-26
DESCRIPTION | 10 MD5 | 16 - NEWS.md | 7 README.md | 2 build/vignette.rds |binary inst/doc/clusterCaches.R | 48 +-- inst/doc/clusterCaches.html | 226 +++++------------ inst/doc/sharingCaches.html | 181 +++----------- inst/doc/simpleCacheIntroduction.html | 435 ++++++++++++++++------------------ 9 files changed, 380 insertions(+), 545 deletions(-)
Title: Calculate TwoDcDAPSA: PROs-Joint Contrast (PJC) and
Swollen–Tender Joints Contrast (STC) Scores and Quartiles
Description: Provides a calculator for the two-dimensional clinical Disease Activity
index for Psoriatic Arthritis (TwoDcDAPSA), a principal component-derived measure
that complements the conventional clinical DAPSA score. TwoDcDAPSA captures
residual variation in patient-reported outcomes (pain and patient global assessment)
and joint counts (swollen and tender) after adjusting for standardized cDAPSA using
natural spline coefficients derived from published models. Residuals are
standardized and combined with fixed principal component loadings to yield two
continuous component scores: the PROs-Joint Contrast (PJC) and the
Swollen–Tender joints Contrast (STC), along with quartile-based groupings
(including optional combined quartile groupings). The package applies pre-specified
coefficients, residual standardization, and loadings to new datasets but does not
estimate spline models or principal components itself.
Author: Ning Meng [aut, cre],
Ji Soo Kim [aut],
Ana-Maria Orbai [aut],
Scott L. Zeger [aut]
Maintainer: Ning Meng <nmeng2@jh.edu>
Diff between TwoDcDAPSA versions 0.1.0 dated 2025-09-30 and 0.1.1 dated 2026-02-26
DESCRIPTION | 32 +++++++++++++++++--------------- LICENSE | 2 +- MD5 | 15 +++++++++------ NAMESPACE | 1 + NEWS.md |only R/TwoDcDAPSA.R | 39 ++++++++++++++++++++++++++++----------- R/calculate_STC.R |only R/zzz.R | 2 +- man/calculate_PJC.Rd | 13 +++++++++++-- man/calculate_STC.Rd |only 10 files changed, 68 insertions(+), 36 deletions(-)
Title: Bayesian Tree Ensembles for Survival Analysis and Causal
Inference
Description: Bayesian regression tree ensembles for survival analysis and causal
inference. Implements BART, DART, Bayesian Causal
Forests (BCF), and Horseshoe Forests models.
Supports right-censored survival outcomes
via accelerated failure time (AFT) formulations. Designed for
high-dimensional prediction and heterogeneous treatment effect
estimation in causal inference.
Author: Tijn Jacobs [aut, cre]
Maintainer: Tijn Jacobs <t.jacobs@vu.nl>
Diff between ShrinkageTrees versions 1.0.2 dated 2025-10-06 and 1.2.0 dated 2026-02-26
DESCRIPTION | 21 + MD5 | 93 ++++--- NAMESPACE | 5 R/CausalHorseForest.R | 34 +- R/CausalShrinkageForest.R | 264 +++++++++++++++++--- R/HorseTrees.R | 19 + R/RcppExports.R | 12 R/ShrinkageTrees.R | 129 +++++++--- R/SurvivalWrappers.R |only R/censored_info.R | 38 ++- README.md | 104 +++++++- inst |only man/CausalHorseForest.Rd | 6 man/CausalShrinkageForest.Rd | 87 +++++- man/ShrinkageTrees.Rd | 60 +++- man/SurvivalBART.Rd |only man/SurvivalBCF.Rd |only man/SurvivalDART.Rd |only man/SurvivalShrinkageBCF.Rd |only man/censored_info.Rd | 2 src/CausalHorseForest.cpp | 357 +++++++++++++++------------- src/CausalHorseForest.h | 21 - src/Forest.cpp | 30 +- src/Forest.h | 53 +--- src/ForestEngine.h |only src/Functions.cpp | 66 ++++- src/Functions.h | 4 src/HorseTrees.cpp | 132 +++++++--- src/Info.h |only src/Information.cpp | 11 src/Information.h | 6 src/Makevars |only src/OuterGibbsFunctions.cpp | 20 - src/Prerequisites.h | 15 - src/Random.h | 148 ++++++----- src/RcppExports.cpp | 44 +-- src/StanForest.cpp |only src/StanForest.h |only src/StanForestFunctions.cpp |only src/StanForestFunctions.h |only src/StanTree.cpp |only src/StanTree.h |only src/StanTreeFunctions.cpp |only src/StanTreeFunctions.h |only src/Tree.cpp | 150 ++++++----- src/Tree.h | 70 ++++- src/TreeModifications.cpp | 366 +++++++++++++++++++++++------ src/TruncatedNormal.h | 2 src/bd.cpp |only src/bd.h |only src/probit-HorseTrees.cpp | 12 tests/testthat/test-CausalHorseForest.R | 16 - tests/testthat/test-CausalShrinkageTrees.R | 26 +- tests/testthat/test-HorseTrees.R | 22 - tests/testthat/test-ShrinkageTrees.R | 79 ++++-- tests/testthat/test-SurvivalBART.R |only tests/testthat/test-SurvivalBCF.R |only tests/testthat/test-SurvivalDART.R |only tests/testthat/test-SurvivalShrinkageBCF.R |only 59 files changed, 1722 insertions(+), 802 deletions(-)
More information about ShrinkageTrees at CRAN
Permanent link
Title: Auto Stats
Description: Automatically do statistical exploration. Create formulas using 'tidyselect' syntax, and then determine cross-validated model accuracy and variable contributions using 'glm' and 'xgboost'. Contains additional helper functions to create and modify formulas. Has a flagship function to quickly determine relationships between categorical and continuous variables in the data set.
Author: Harrison Tietze [aut, cre]
Maintainer: Harrison Tietze <harrison4192@gmail.com>
This is a re-admission after prior archival of version 0.4.1 dated 2024-06-04
Diff between autostats versions 0.4.1 dated 2024-06-04 and 0.4.2 dated 2026-02-26
autostats-0.4.1/autostats/man/get_params.Rd |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-3_a75eeb4541d84a7071165fce0896156c.RData |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-3_a75eeb4541d84a7071165fce0896156c.rdb |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-3_a75eeb4541d84a7071165fce0896156c.rdx |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-4_0b847d3b805d1eb41dca21f75a54c019.RData |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-4_0b847d3b805d1eb41dca21f75a54c019.rdb |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-4_0b847d3b805d1eb41dca21f75a54c019.rdx |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-5_24fb4927d98a9dd28371c63b5e687071.RData |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-5_24fb4927d98a9dd28371c63b5e687071.rdb |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-5_24fb4927d98a9dd28371c63b5e687071.rdx |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-6_55f35359a676a28976474eeffab310c1.RData |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-6_55f35359a676a28976474eeffab310c1.rdb |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-6_55f35359a676a28976474eeffab310c1.rdx |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-8_e5e532e77e358ad3858f79e1582db601.RData |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-8_e5e532e77e358ad3858f79e1582db601.rdb |only autostats-0.4.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-8_e5e532e77e358ad3858f79e1582db601.rdx |only autostats-0.4.2/autostats/DESCRIPTION | 8 autostats-0.4.2/autostats/MD5 | 79 - autostats-0.4.2/autostats/NAMESPACE | 3 autostats-0.4.2/autostats/NEWS.md | 2 autostats-0.4.2/autostats/R/get_params.R | 150 +-- autostats-0.4.2/autostats/R/tidy_predict.R | 7 autostats-0.4.2/autostats/R/tidy_shap.R | 4 autostats-0.4.2/autostats/R/tidy_xgboost.R | 63 - autostats-0.4.2/autostats/R/visualize_model.R | 12 autostats-0.4.2/autostats/build/vignette.rds |binary autostats-0.4.2/autostats/inst/doc/autostats.R | 2 autostats-0.4.2/autostats/inst/doc/autostats.Rmd | 2 autostats-0.4.2/autostats/inst/doc/autostats.html | 41 autostats-0.4.2/autostats/inst/doc/tidyXgboost.R | 8 autostats-0.4.2/autostats/inst/doc/tidyXgboost.Rmd | 2 autostats-0.4.2/autostats/inst/doc/tidyXgboost.html | 472 ++++------ autostats-0.4.2/autostats/man/plot_varimp_xgboost.Rd | 18 autostats-0.4.2/autostats/man/tidy_shap.Rd | 1 autostats-0.4.2/autostats/man/visualize_model.Rd | 17 autostats-0.4.2/autostats/vignettes/autostats.Rmd | 2 autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-3_875ae24c593f7aecf55256afdb03f855.RData |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-3_875ae24c593f7aecf55256afdb03f855.rdb |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-3_875ae24c593f7aecf55256afdb03f855.rdx |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-4_615add07d0d3f7fc68a6e5314ba5ac88.RData |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-4_615add07d0d3f7fc68a6e5314ba5ac88.rdb |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-4_615add07d0d3f7fc68a6e5314ba5ac88.rdx |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-5_4ff9ff8b52a17282e040d1e58431592b.RData |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-5_4ff9ff8b52a17282e040d1e58431592b.rdb |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-5_4ff9ff8b52a17282e040d1e58431592b.rdx |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-6_c4525f5259874b80a7fb54393f0c45bf.RData |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-6_c4525f5259874b80a7fb54393f0c45bf.rdb |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-6_c4525f5259874b80a7fb54393f0c45bf.rdx |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-8_65bdf5637673783f9200ea61ae89adad.RData |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-8_65bdf5637673783f9200ea61ae89adad.rdb |only autostats-0.4.2/autostats/vignettes/autostats_cache/html/unnamed-chunk-8_65bdf5637673783f9200ea61ae89adad.rdx |only autostats-0.4.2/autostats/vignettes/autostats_files/figure-html/unnamed-chunk-3-1.png |binary autostats-0.4.2/autostats/vignettes/autostats_files/figure-html/unnamed-chunk-3-2.png |binary autostats-0.4.2/autostats/vignettes/autostats_files/figure-html/unnamed-chunk-5-1.png |binary autostats-0.4.2/autostats/vignettes/autostats_files/figure-html/unnamed-chunk-5-2.png |binary autostats-0.4.2/autostats/vignettes/tidyXgboost.Rmd | 2 56 files changed, 386 insertions(+), 509 deletions(-)
Title: Brings Seurat to the Tidyverse
Description: It creates an invisible layer that allow to see the 'Seurat' object
as tibble and interact seamlessly with the tidyverse.
Author: Stefano Mangiola [aut, cre],
Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Diff between tidyseurat versions 0.8.7 dated 2025-11-09 and 0.8.10 dated 2026-02-26
DESCRIPTION | 6 - MD5 | 49 +++++----- NAMESPACE | 4 R/dplyr_methods.R | 73 +++++++++++++-- README.md | 6 - build/stage23.rdb |binary inst/NEWS.rd | 11 ++ inst/doc/figures_article.html | 8 - inst/doc/introduction.html | 122 +++++++++++++++----------- man/count.Rd | 67 ++++++-------- man/figures/pc_plot-1.png |binary man/figures/plot1-1.png |binary man/figures/plot2-1.png |binary man/figures/unnamed-chunk-15-1.png |binary man/filter.Rd | 172 +++++++++++++++++++++++++++++-------- man/ggplot.Rd | 2 man/group_by.Rd | 34 +++---- man/mutate.Rd | 10 +- man/nest.Rd | 12 +- man/pivot_longer.Rd | 2 man/plotly.Rd | 2 man/select.Rd | 73 +++++++++------ man/slice.Rd | 19 ++-- man/summarise.Rd | 7 - man/unnest.Rd | 10 +- tests/testthat/Rplots.pdf |only 26 files changed, 443 insertions(+), 246 deletions(-)
Title: Risk Difference Estimation with Multiple Link Functions and
Inverse Probability of Treatment Weighting
Description: Calculates risk differences (or prevalence differences for
cross-sectional data) and Number Needed to Treat (NNT) using generalized
linear models with automatic link function selection. Provides robust
model fitting with fallback methods, support for stratification and
adjustment variables, inverse probability of treatment weighting (IPTW)
for causal inference with NNT calculations, and publication-ready output
formatting. Handles model convergence issues gracefully and provides
confidence intervals using multiple approaches.
Methods are based on approaches described in Mark W. Donoghoe and
Ian C. Marschner (2018) "logbin: An R Package for Relative Risk
Regression Using the Log-Binomial Model" <doi:10.18637/jss.v086.i09>
for robust GLM fitting, Peter C. Austin (2011) "An Introduction to
Propensity Score Methods for Reducing the Effects of Confounding in
Observational Studies" <doi:10.1080/00273171.2011.568786> for IPTW methods,
and standard epidemiological methods for risk [...truncated...]
Author: John D. Murphy [aut, cre]
Maintainer: John D. Murphy <jackdmurphy@protonmail.com>
Diff between riskdiff versions 0.2.1 dated 2025-06-30 and 0.3.0 dated 2026-02-26
riskdiff-0.2.1/riskdiff/tests/testthat/test-boundary_detection.R |only riskdiff-0.2.1/riskdiff/tests/testthat/test-calc_risk_diff.R |only riskdiff-0.2.1/riskdiff/tests/testthat/test-edge_cases.R |only riskdiff-0.3.0/riskdiff/DESCRIPTION | 30 riskdiff-0.3.0/riskdiff/MD5 | 75 - riskdiff-0.3.0/riskdiff/NAMESPACE | 3 riskdiff-0.3.0/riskdiff/NEWS.md | 62 + riskdiff-0.3.0/riskdiff/R/boundary_detection.R | 11 riskdiff-0.3.0/riskdiff/R/calc_risk_diff.R | 170 ++- riskdiff-0.3.0/riskdiff/R/data.R | 3 riskdiff-0.3.0/riskdiff/R/formatting.R | 69 + riskdiff-0.3.0/riskdiff/R/iptw_causal.R | 134 ++ riskdiff-0.3.0/riskdiff/R/iptw_diagnostics.R | 38 riskdiff-0.3.0/riskdiff/R/iptw_helpers.R | 65 + riskdiff-0.3.0/riskdiff/R/utils.R | 225 +++- riskdiff-0.3.0/riskdiff/README.md | 265 ++-- riskdiff-0.3.0/riskdiff/build/partial.rdb |binary riskdiff-0.3.0/riskdiff/build/vignette.rds |binary riskdiff-0.3.0/riskdiff/inst/doc/complete-example.html | 5 riskdiff-0.3.0/riskdiff/inst/doc/iptw-analysis.R | 34 riskdiff-0.3.0/riskdiff/inst/doc/iptw-analysis.Rmd | 45 riskdiff-0.3.0/riskdiff/inst/doc/iptw-analysis.html | 425 ++++--- riskdiff-0.3.0/riskdiff/inst/doc/riskdiff-intro.R | 11 riskdiff-0.3.0/riskdiff/inst/doc/riskdiff-intro.Rmd | 16 riskdiff-0.3.0/riskdiff/inst/doc/riskdiff-intro.html | 535 +++++----- riskdiff-0.3.0/riskdiff/inst/doc/technical-details.html | 5 riskdiff-0.3.0/riskdiff/man/calc_risk_diff.Rd | 77 - riskdiff-0.3.0/riskdiff/man/calc_risk_diff_iptw.Rd | 41 riskdiff-0.3.0/riskdiff/man/dot-transform_iptw_to_nnt.Rd |only riskdiff-0.3.0/riskdiff/man/dot-transform_to_nnt.Rd |only riskdiff-0.3.0/riskdiff/man/format_risk_diff.Rd | 5 riskdiff-0.3.0/riskdiff/man/print.nnt_iptw_result.Rd |only riskdiff-0.3.0/riskdiff/man/print.nnt_result.Rd |only riskdiff-0.3.0/riskdiff/man/riskdiff-package.Rd | 4 riskdiff-0.3.0/riskdiff/tests/testthat/plots |only riskdiff-0.3.0/riskdiff/tests/testthat/test-boundary-detection-enhanced.R |only riskdiff-0.3.0/riskdiff/tests/testthat/test-boundary-detection.R |only riskdiff-0.3.0/riskdiff/tests/testthat/test-calc-risk-diff-enhanced.R |only riskdiff-0.3.0/riskdiff/tests/testthat/test-calc-risk-diff.R |only riskdiff-0.3.0/riskdiff/tests/testthat/test-edge-cases.R |only riskdiff-0.3.0/riskdiff/tests/testthat/test-formatting-enhanced.R |only riskdiff-0.3.0/riskdiff/tests/testthat/test-iptw-diagnostics.R |only riskdiff-0.3.0/riskdiff/tests/testthat/test-iptw.R | 138 ++ riskdiff-0.3.0/riskdiff/tests/testthat/test-nnt.R |only riskdiff-0.3.0/riskdiff/vignettes/iptw-analysis.Rmd | 45 riskdiff-0.3.0/riskdiff/vignettes/riskdiff-intro.Rmd | 16 46 files changed, 1792 insertions(+), 760 deletions(-)
Title: Helper Functions to Work with 'Moodle' Data
Description: A collection of functions to connect to a 'Moodle' database, cache relevant tables locally and generate learning analytics.
'Moodle' is an open source Learning Management System (LMS) developed by MoodleHQ. For more information about Moodle, visit <https://moodle.org>.
Author: Aleksander Dietrichson [aut, cre],
Chi Square Laboratories [cph],
Darko Miletic [ctb],
Pablo Pagnone [ctb],
Alex Ondrus [ctb]
Maintainer: Aleksander Dietrichson <dietrichson@gmail.com>
Diff between moodleR versions 1.0.1 dated 2022-08-15 and 1.0.5 dated 2026-02-26
DESCRIPTION | 10 +-- MD5 | 20 +++--- NEWS.md | 8 ++ R/zzz.R | 3 README.md | 9 -- build/vignette.rds |binary inst/doc/setup.R | 16 ++--- inst/doc/setup.Rmd | 2 inst/doc/setup.html | 154 +++++++++++++++++++++++++------------------------ man/moodleR-package.Rd | 2 vignettes/setup.Rmd | 2 11 files changed, 118 insertions(+), 108 deletions(-)
Title: Automatically Runs 18 Logistic Models-14 Individual Logistic
Models and 4 Ensembles of Models
Description: Automatically returns results from 18 logistic models including 14 individual logistic models and 4 logistic ensembles of models. The package also returns 25 plots, 5 tables, and a summary report. The package automatically
builds all 18 models, reports all results, and provides graphics to show how the models performed. This can be used for a wide range of data, such as sports or medical data. The package includes medical data (the Pima Indians data set), and
information about the performance of Lebron James. The package can be used to analyze many other examples, such as stock market data. The package automatically returns many values for each model, such as
True Positive Rate, True Negative Rate, False Positive Rate, False Negative Rate, Positive Predictive Value, Negative Predictive Value, F1 Score, Area Under the Curve. The package also returns 36 Receiver
Operating Characteristic (ROC) curves for each of the 18 models.
Author: Russ Conte [aut, cre, cph]
Maintainer: Russ Conte <russconte@mac.com>
Diff between LogisticEnsembles versions 1.0.0 dated 2026-02-15 and 1.0.2 dated 2026-02-26
DESCRIPTION | 12 MD5 | 16 NAMESPACE | 3 NEWS.md | 5 R/Logistic.R | 105 ++- inst/doc/vignette_0_The_Hello_World_of_LogisticEnsembles.Rmd | 6 inst/doc/vignette_0_The_Hello_World_of_LogisticEnsembles.html | 6 inst/doc/vignette_1_data_colnum_numresamples.html | 343 ++++------ vignettes/vignette_0_The_Hello_World_of_LogisticEnsembles.Rmd | 6 9 files changed, 283 insertions(+), 219 deletions(-)
More information about LogisticEnsembles at CRAN
Permanent link
Title: Geostatistical Modelling with Likelihood and Bayes
Description: Geostatistical modelling facilities using 'SpatRaster' and 'SpatVector'
objects are provided. Non-Gaussian models are fit using 'INLA', and Gaussian
geostatistical models use Maximum Likelihood Estimation. For details see Brown (2015) <doi:10.18637/jss.v063.i12>. The 'RandomFields' package is available at <https://www.wim.uni-mannheim.de/schlather/publications/software>.
Author: Patrick Brown [aut, cre, cph]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between geostatsp versions 2.0.10 dated 2026-02-26 and 2.0.11 dated 2026-02-26
geostatsp-2.0.10/geostatsp/vignettes/Makefile |only geostatsp-2.0.11/geostatsp/DESCRIPTION | 8 geostatsp-2.0.11/geostatsp/MD5 | 11 - geostatsp-2.0.11/geostatsp/R/profLlgm.R | 282 ++++++++++++-------------- geostatsp-2.0.11/geostatsp/build/stage23.rdb |binary geostatsp-2.0.11/geostatsp/inst/doc/glgm.pdf |binary geostatsp-2.0.11/geostatsp/inst/doc/lgcp.pdf |binary 7 files changed, 144 insertions(+), 157 deletions(-)
Title: Automatic Codebooks from Metadata Encoded in Dataset Attributes
Description: Easily automate the following tasks to describe data frames:
Summarise the distributions, and labelled missings of variables graphically
and using descriptive statistics.
For surveys, compute and summarise reliabilities (internal consistencies,
retest, multilevel) for psychological scales.
Combine this information with metadata (such as item labels and labelled
values) that is derived from R attributes.
To do so, the package relies on 'rmarkdown' partials, so you can generate
HTML, PDF, and Word documents.
Codebooks are also available as tables (CSV, Excel, etc.) and in JSON-LD, so
that search engines can find your data and index the metadata.
The metadata are also available at your fingertips via RStudio Addins.
Author: Ruben Arslan [aut, cre]
Maintainer: Ruben Arslan <ruben.arslan@gmail.com>
This is a re-admission after prior archival of version 0.9.6 dated 2025-01-08
Diff between codebook versions 0.9.6 dated 2025-01-08 and 0.10.0 dated 2026-02-26
DESCRIPTION | 13 +-- MD5 | 57 +++++++-------- NEWS.md | 13 +++ R/codebook.R | 64 +++++++++++----- R/label_browser.R | 6 - R/misc.R | 7 + R/plot_helpers.R | 6 + R/reliability.R | 53 +++---------- R/rmarkdown_helpers.R | 2 build/vignette.rds |binary inst/WORDLIST |only inst/_codebook_data_info.Rmd | 13 ++- inst/_template_codebook.Rmd | 3 inst/doc/codebook.R | 13 ++- inst/doc/codebook.html | 99 ++++++++------------------ inst/doc/codebook_qualtrics.R | 13 ++- inst/doc/codebook_qualtrics.html | 75 +++++++++---------- inst/doc/codebook_sav.R | 30 ++++++- inst/doc/codebook_sav.Rmd | 17 +++- inst/doc/codebook_sav.html | 148 ++++++++++----------------------------- inst/doc/codebook_tutorial.R | 42 +++++++++-- inst/doc/codebook_tutorial.Rmd | 23 +++++- inst/doc/codebook_tutorial.html | 147 ++++++++++---------------------------- man/codebook.Rd | 9 ++ man/codebook_browser.Rd | 2 man/compute_reliabilities.Rd | 3 man/likert_from_items.Rd | 2 man/pull_reliability.Rd | 2 vignettes/codebook_sav.Rmd | 17 +++- vignettes/codebook_tutorial.Rmd | 23 +++++- 30 files changed, 441 insertions(+), 461 deletions(-)
Title: Continuous Norming
Description: A comprehensive toolkit for generating continuous test norms in
psychometrics and biometrics, and analyzing model fit. The package offers
both distribution-free modeling using Taylor polynomials and parametric
modeling using the beta-binomial and the 'Sinh-Arcsinh' distribution.
Originally developed for achievement tests, it is applicable to a wide
range of mental, physical, or other test scores dependent on continuous or
discrete explanatory variables. The package provides several advantages:
It minimizes deviations from representativeness in subsamples, interpolates
between discrete levels of explanatory variables, and significantly reduces
the required sample size compared to conventional norming per age group.
cNORM enables graphical and analytical evaluation of model fit,
accommodates a wide range of scales including those with negative and
descending values, and even supports conventional norming. It generates
norm tables including confidence intervals. It also includes methods f [...truncated...]
Author: Alexandra Lenhard [aut] ,
Wolfgang Lenhard [cre, aut] ,
Sebastian Gary [aut],
WPS Publisher [fnd]
Maintainer: Wolfgang Lenhard <wolfgang.lenhard@uni-wuerzburg.de>
Diff between cNORM versions 3.5.1 dated 2025-10-14 and 3.5.2 dated 2026-02-26
cNORM-3.5.1/cNORM/inst/shiny/server.R |only cNORM-3.5.1/cNORM/inst/shiny/ui.R |only cNORM-3.5.1/cNORM/inst/shiny/www |only cNORM-3.5.2/cNORM/DESCRIPTION | 10 - cNORM-3.5.2/cNORM/MD5 | 54 +++++---- cNORM-3.5.2/cNORM/NAMESPACE | 1 cNORM-3.5.2/cNORM/NEWS.md | 24 ++++ cNORM-3.5.2/cNORM/R/betaBinomial.R | 97 +++++++++++------ cNORM-3.5.2/cNORM/R/cNORM.R | 60 +++++++++- cNORM-3.5.2/cNORM/R/plot.R | 117 ++++++++++----------- cNORM-3.5.2/cNORM/R/shash.R | 59 ++++++---- cNORM-3.5.2/cNORM/R/utilities.R | 8 + cNORM-3.5.2/cNORM/build/partial.rdb |binary cNORM-3.5.2/cNORM/build/vignette.rds |binary cNORM-3.5.2/cNORM/inst/doc/BetaBinomial.html | 6 - cNORM-3.5.2/cNORM/inst/doc/WeightedRegression.html | 6 - cNORM-3.5.2/cNORM/inst/doc/cNORM-Demo.html | 6 - cNORM-3.5.2/cNORM/inst/doc/sinh.html | 4 cNORM-3.5.2/cNORM/inst/shiny/app1 |only cNORM-3.5.2/cNORM/inst/shiny/app2 |only cNORM-3.5.2/cNORM/man/cNORM.GUI.Rd | 6 - cNORM-3.5.2/cNORM/man/cNORM.GUI2.Rd |only cNORM-3.5.2/cNORM/man/cnorm.shash.Rd | 2 cNORM-3.5.2/cNORM/man/plotRaw.Rd | 4 24 files changed, 297 insertions(+), 167 deletions(-)
Title: Load and Process Passive Acoustic Data
Description: Tools for loading and processing passive acoustic data. Read in data
that has been processed in 'Pamguard' (<https://www.pamguard.org/>), apply a suite
processing functions, and export data for reports or external modeling tools. Parameter
calculations implement methods by Oswald et al (2007) <doi:10.1121/1.2743157>,
Griffiths et al (2020) <doi:10.1121/10.0001229> and Baumann-Pickering et al (2010)
<doi:10.1121/1.3479549>.
Author: Taiki Sakai [aut, cre],
Jay Barlow [ctb],
Emily Griffiths [ctb],
Michael Oswald [ctb],
Simone Baumann-Pickering [ctb],
Julie Oswald [ctb]
Maintainer: Taiki Sakai <taiki.sakai@noaa.gov>
Diff between PAMpal versions 1.4.4 dated 2025-03-03 and 1.5.2 dated 2026-02-26
DESCRIPTION | 8 +-- MD5 | 34 +++++++-------- NEWS.md | 30 +++++++++++++ R/AllGetSet.R | 10 ++-- R/addRecordings.R | 74 ++++++++++++++++++++++++++++++---- R/addSettings.R | 2 R/bindStudies.R | 17 ++++++- R/calculateAverageSpectra.R | 58 ++++++++++++++++----------- R/calculateEchoDepth.R | 35 ++++++++++------ R/calculateICI.R | 1 R/filterEchoDepths.R | 8 +++ R/processPgDetections.R | 88 ++++++++++++++++++++++------------------- R/runDepthReview.R | 6 +- R/summariseDiveDepth.R | 1 man/PAMpal.accessors.Rd | 8 ++- man/addRecordings.Rd | 49 ++++++++++++++++++++-- man/calculateAverageSpectra.Rd | 3 - man/processPgDetections.Rd | 4 + 18 files changed, 311 insertions(+), 125 deletions(-)
Title: Automatically Runs 18 Individual and 14 Ensembles of Models
Description: Automatically runs 18 individual models and 14 ensembles on numeric data, for a total of 32 models. The package automatically returns complete results on all 32 models,
25 charts and six tables. The user simply provides the tidy data, and answers a few questions (for example, how many times would you like to resample the data).
From there the package randomly splits the data into train, test and validation sets as the user requests (for example, train = 0.60, test = 0.20, validation = 0.20),
fits each of models on the training data, makes predictions on the test and validation sets, measures root mean squared error (RMSE), removes features above a user-set level of Variance Inflation Factor, and has several optional features including scaling
all numeric data, four different ways to handle strings in the data. Perhaps the most significant feature is the package's ability to make predictions
using the 32 pre trained models on totally new (untrained) data if the user selects that feature [...truncated...]
Author: Russ Conte [aut, cre, cph]
Maintainer: Russ Conte <russconte@mac.com>
Diff between NumericEnsembles versions 1.0.0 dated 2026-02-15 and 1.0.3 dated 2026-02-26
NumericEnsembles-1.0.0/NumericEnsembles/vignettes/images/Accuracy_barchart-01.jpeg |only NumericEnsembles-1.0.0/NumericEnsembles/vignettes/images/Best_model_actual_vs_predicted.jpeg |only NumericEnsembles-1.0.0/NumericEnsembles/vignettes/images/Best_model_actual_vs_predicted.jpg |only NumericEnsembles-1.0.0/NumericEnsembles/vignettes/images/Boston_Housing_set_seed=12345.jpeg |only NumericEnsembles-1.0.0/NumericEnsembles/vignettes/images/EnsembleEarth_actual_vs_pred.jpeg |only NumericEnsembles-1.0.0/NumericEnsembles/vignettes/images/RF_Highest_Importance.png |only NumericEnsembles-1.0.0/NumericEnsembles/vignettes/images/pred_vs_actual.jpeg |only NumericEnsembles-1.0.3/NumericEnsembles/DESCRIPTION | 14 NumericEnsembles-1.0.3/NumericEnsembles/MD5 | 30 - NumericEnsembles-1.0.3/NumericEnsembles/NAMESPACE | 3 NumericEnsembles-1.0.3/NumericEnsembles/NEWS.md | 9 NumericEnsembles-1.0.3/NumericEnsembles/R/NumericEnsembles.R | 182 +++++-- NumericEnsembles-1.0.3/NumericEnsembles/README.md | 4 NumericEnsembles-1.0.3/NumericEnsembles/inst/doc/NumericEnsembles.Rmd | 89 ++- NumericEnsembles-1.0.3/NumericEnsembles/inst/doc/NumericEnsembles.html | 237 +++++++--- NumericEnsembles-1.0.3/NumericEnsembles/vignettes/NumericEnsembles.Rmd | 89 ++- NumericEnsembles-1.0.3/NumericEnsembles/vignettes/images/Accuracy_barchart.jpeg |binary NumericEnsembles-1.0.3/NumericEnsembles/vignettes/images/Best_model_actual_vs_predicted.jpg.jpeg |only NumericEnsembles-1.0.3/NumericEnsembles/vignettes/images/Duration.jpeg |binary NumericEnsembles-1.0.3/NumericEnsembles/vignettes/images/setseed=12345.jpg |binary 20 files changed, 435 insertions(+), 222 deletions(-)
More information about NumericEnsembles at CRAN
Permanent link
Title: Automatically Builds 12 Classification Models (6 Individual and
6 Ensembles of Models) from Classification Data
Description: Automatically builds 12 classification models from data. The package also returns 25 plots, 5 tables and a summary report.
Author: Russ Conte [aut, cre, cph]
Maintainer: Russ Conte <russconte@mac.com>
Diff between ClassificationEnsembles versions 1.0.0 dated 2026-02-15 and 1.0.2 dated 2026-02-26
DESCRIPTION | 12 MD5 | 8 NAMESPACE | 4 NEWS.md | 5 R/ClassificationEnsembles.R | 667 +++++++++++++++++++++++++------------------- 5 files changed, 409 insertions(+), 287 deletions(-)
More information about ClassificationEnsembles at CRAN
Permanent link
Title: Feature Importance Methods for Global Explanations
Description: Provides a consistent interface for common feature importance
methods as described in Ewald et al. (2024)
<doi:10.1007/978-3-031-63797-1_22>, including permutation feature
importance (PFI), conditional and relative feature importance (CFI,
RFI), leave one covariate out (LOCO), and Shapley additive global
importance (SAGE), as well as feature sampling mechanisms to support
conditional importance methods.
Author: Lukas Burk [aut, cre, cph]
Maintainer: Lukas Burk <cran@lukasburk.de>
Diff between xplainfi versions 1.0.0 dated 2026-01-30 and 1.1.0 dated 2026-02-26
xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-111.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-13.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-133.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-176.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-198.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-219.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-247.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-278.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-30.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-329.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-55.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-76.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-CFI-94.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalARFSampler-127.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalARFSampler-144.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalARFSampler-149.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalARFSampler-37.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalARFSampler-63.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalARFSampler-83.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalCtreeSampler-101.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalCtreeSampler-131.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalCtreeSampler-147.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalCtreeSampler-163.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalCtreeSampler-167.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalCtreeSampler-45.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalCtreeSampler-81.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalGaussianSampler-104.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalGaussianSampler-108.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalGaussianSampler-28.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalGaussianSampler-56.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalGaussianSampler-72.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalGaussianSampler-88.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalKNNSampler-101.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalKNNSampler-116.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalKNNSampler-132.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalKNNSampler-136.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalKNNSampler-152.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalKNNSampler-173.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalKNNSampler-28.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalKNNSampler-56.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalKNNSampler-80.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalSAGE-107.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalSAGE-13.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalSAGE-141.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalSAGE-172.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalSAGE-197.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalSAGE-29.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalSAGE-50.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-ConditionalSAGE-67.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-MarginalSAGE-11.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-MarginalSAGE-114.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-MarginalSAGE-136.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-MarginalSAGE-200.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-MarginalSAGE-24.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-MarginalSAGE-256.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-MarginalSAGE-42.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-MarginalSAGE-51.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-MarginalSAGE-68.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-MarginalSAGE-94.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-PFI-11.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-PFI-120.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-PFI-139.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-PFI-27.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-PFI-32.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-PFI-52.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-PFI-69.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-PFI-88.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-PFI-97.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-118.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-136.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-16.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-200.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-223.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-246.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-267.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-289.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-32.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-330.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-56.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-78.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-RFI-97.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-utils-sage-10.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-utils-sage-34.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-utils-sage-64.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-utils-sage-91.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-variance-estimation-113.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-variance-estimation-13.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-variance-estimation-142.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-variance-estimation-168.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-variance-estimation-207.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-variance-estimation-41.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-variance-estimation-60.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-variance-estimation-88.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-xplain_options-21.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-xplain_options-3.R |only xplainfi-1.0.0/xplainfi/tests/testthat/_problems/test-xplain_options-31.R |only xplainfi-1.1.0/xplainfi/DESCRIPTION | 23 xplainfi-1.1.0/xplainfi/MD5 | 207 -- xplainfi-1.1.0/xplainfi/NAMESPACE | 6 xplainfi-1.1.0/xplainfi/NEWS.md | 50 xplainfi-1.1.0/xplainfi/R/FeatureImportanceMethod.R | 127 + xplainfi-1.1.0/xplainfi/R/PerturbationImportance.R | 102 + xplainfi-1.1.0/xplainfi/R/SAGE.R | 12 xplainfi-1.1.0/xplainfi/R/WVIM.R | 129 + xplainfi-1.1.0/xplainfi/R/bibentries.R | 2 xplainfi-1.1.0/xplainfi/R/data-sim.R | 27 xplainfi-1.1.0/xplainfi/R/utils-importance.R | 467 +++++- xplainfi-1.1.0/xplainfi/R/utils-mlr3.R | 117 + xplainfi-1.1.0/xplainfi/R/utils-test.R | 43 xplainfi-1.1.0/xplainfi/README.md | 101 - xplainfi-1.1.0/xplainfi/inst/doc/feature-samplers.Rmd | 2 xplainfi-1.1.0/xplainfi/inst/doc/feature-samplers.html | 154 +- xplainfi-1.1.0/xplainfi/inst/doc/simulation-settings.Rmd | 24 xplainfi-1.1.0/xplainfi/inst/doc/simulation-settings.html | 54 xplainfi-1.1.0/xplainfi/inst/doc/xplainfi.R | 69 xplainfi-1.1.0/xplainfi/inst/doc/xplainfi.Rmd | 127 + xplainfi-1.1.0/xplainfi/inst/doc/xplainfi.html | 699 +++++----- xplainfi-1.1.0/xplainfi/man/CFI.Rd | 49 xplainfi-1.1.0/xplainfi/man/FeatureImportanceMethod.Rd | 96 + xplainfi-1.1.0/xplainfi/man/LOCO.Rd | 13 xplainfi-1.1.0/xplainfi/man/PFI.Rd | 10 xplainfi-1.1.0/xplainfi/man/PerturbationImportance.Rd | 20 xplainfi-1.1.0/xplainfi/man/RFI.Rd | 10 xplainfi-1.1.0/xplainfi/man/WVIM.Rd | 87 + xplainfi-1.1.0/xplainfi/man/figures/README-pfi-plot-1.png |binary xplainfi-1.1.0/xplainfi/man/rsmp_all_test.Rd |only xplainfi-1.1.0/xplainfi/man/sim_dgp_ewald.Rd | 8 xplainfi-1.1.0/xplainfi/man/sim_dgp_scenarios.Rd | 20 xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-CFI-12.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-CFI-354.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-CFI-368.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-CFI-49.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-CFI-93.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-PFI-10.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-PFI-30.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-PFI-92.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-WVIM-10.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-WVIM-206.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-WVIM-225.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-WVIM-255.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-WVIM-273.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-WVIM-298.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-WVIM-322.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-WVIM-323.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-WVIM-340.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-WVIM-92.R |only xplainfi-1.1.0/xplainfi/tests/testthat/_problems/test-variance-estimation-333.R |only xplainfi-1.1.0/xplainfi/tests/testthat/helper-feature-importance.R | 122 - xplainfi-1.1.0/xplainfi/tests/testthat/helper-importance.R | 71 - xplainfi-1.1.0/xplainfi/tests/testthat/helper-samplers.R | 11 xplainfi-1.1.0/xplainfi/tests/testthat/test-CFI.R | 211 +-- xplainfi-1.1.0/xplainfi/tests/testthat/test-ConditionalCtreeSampler.R | 9 xplainfi-1.1.0/xplainfi/tests/testthat/test-ConditionalKNNSampler.R | 1 xplainfi-1.1.0/xplainfi/tests/testthat/test-ConditionalSAGE.R | 27 xplainfi-1.1.0/xplainfi/tests/testthat/test-MarginalSAGE.R | 37 xplainfi-1.1.0/xplainfi/tests/testthat/test-PFI.R | 53 xplainfi-1.1.0/xplainfi/tests/testthat/test-RFI.R | 164 +- xplainfi-1.1.0/xplainfi/tests/testthat/test-WVIM.R | 337 +++- xplainfi-1.1.0/xplainfi/tests/testthat/test-pretrained.R |only xplainfi-1.1.0/xplainfi/tests/testthat/test-variance-estimation.R | 258 +++ xplainfi-1.1.0/xplainfi/vignettes/feature-samplers.Rmd | 2 xplainfi-1.1.0/xplainfi/vignettes/simulation-settings.Rmd | 24 xplainfi-1.1.0/xplainfi/vignettes/xplainfi.Rmd | 127 + 163 files changed, 2893 insertions(+), 1416 deletions(-)
Title: Ultra-Fast Analysis of Sparse DNA Methylome via Recurrent
Pattern Encoding
Description: Methods for analyzing DNA methylation data via Most Recurrent Methylation Patterns (MRMPs). Supports cell-type annotation, spatial deconvolution, unsupervised clustering, and cancer cell-of-origin inference. Includes C-backed summaries for YAME “.cg/.cm” files (overlap counts, log2 odds ratios, beta/depth aggregation), an XGBoost classifier, NNLS deconvolution, and plotting utilities. Scales to large spatial and single-cell methylomes and is robust to extreme sparsity.
Author: Hongxiang Fu [aut, cre] ,
Wanding Zhou [cph, fnd],
The SAMtools/HTSlib authors [ctb, cph] ,
Attractive Chaos [ctb, cph] )
Maintainer: Hongxiang Fu <fhx@seas.upenn.edu>
Diff between MethScope versions 1.0.0 dated 2025-12-09 and 1.0.1 dated 2026-02-26
DESCRIPTION | 6 ++--- MD5 | 16 +++++++------- inst/doc/MethScope-Tutorial.Rmd | 2 - inst/doc/MethScope-Tutorial.html | 5 ++-- man/GenerateReference.Rd | 4 +-- man/PlotUMAP.Rd | 2 - man/PlotUMAP_fixedwindow.Rd | 2 - src/format3.c | 44 +++++++++++++++++++++++---------------- vignettes/MethScope-Tutorial.Rmd | 2 - 9 files changed, 46 insertions(+), 37 deletions(-)
Title: Utilities for the Application of a Polygenic Score to a VCF
Description: Simple and transparent parsing of genotype/dosage data
from an input Variant Call Format (VCF) file, matching of genotype
coordinates to the component Single Nucleotide Polymorphisms (SNPs)
of an existing polygenic score (PGS), and application of SNP weights
to dosages for the calculation of a polygenic score for each individual
in accordance with the additive weighted sum of dosages model. Methods
are designed in reference to best practices described by
Collister, Liu, and Clifton (2022) <doi:10.3389/fgene.2022.818574>.
Author: Paul Boutros [cre],
Nicole Zeltser [aut] ,
Rachel Dang [ctb],
Raag Agrawal [ctb]
Maintainer: Paul Boutros <PBoutros@sbpdiscovery.org>
Diff between ApplyPolygenicScore versions 4.0.1 dated 2026-01-23 and 4.0.2 dated 2026-02-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ inst/doc/UserGuide.html | 3 ++- tests/testthat/test-vcf-import.R | 29 ++++++++++++++--------------- 5 files changed, 28 insertions(+), 23 deletions(-)
More information about ApplyPolygenicScore at CRAN
Permanent link
Title: Extract Text from Rich Text Format (RTF) Documents
Description: Wraps the 'unrtf' utility <https://www.gnu.org/software/unrtf/> to
extract text from RTF files. Supports document conversion to HTML, LaTeX or
plain text. Output in HTML is recommended because 'unrtf' has limited
support for converting between character encodings.
Author: Jeroen Ooms [aut, cre],
Free Software Foundation, Inc [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between unrtf versions 1.4.7 dated 2024-10-26 and 1.4.8 dated 2026-02-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 3 +++ src/Makevars | 5 ++++- 4 files changed, 14 insertions(+), 8 deletions(-)
Title: Multicountry Term Structure of Interest Rates Models
Description: Package for estimating, analyzing, and forecasting multi-country macro-finance affine term structure models (ATSMs). All setups build on the single-country unspanned macroeconomic risk framework from Joslin, Priebsch, and Singleton (2014, JF) <doi:10.1111/jofi.12131>. Multicountry extensions by Jotikasthira, Le, and Lundblad (2015, JFE) <doi:10.1016/j.jfineco.2014.09.004>, Candelon and Moura (2023, EM) <doi:10.1016/j.econmod.2023.106453>, and Candelon and Moura (2024, JFEC) <doi:10.1093/jjfinec/nbae008> are also available. The package also provides tools for bias correction as in Bauer Rudebusch and Wu (2012, JBES) <doi:10.1080/07350015.2012.693855>, bootstrap analysis, and several graphical/numerical outputs.
Author: Rubens Moura [aut, cre]
Maintainer: Rubens Moura <rubens.gtmoura@gmail.com>
Diff between MultiATSM versions 1.5.1 dated 2025-11-05 and 1.5.1-1 dated 2026-02-26
DESCRIPTION | 8 +- MD5 | 31 +++++------ README.md | 9 ++- inst/doc/MultiATSM.Rmd | 2 inst/doc/MultiATSM.html | 11 ++- inst/doc/Paper-Replications.Rmd | 2 inst/doc/Paper-Replications.html | 12 ++-- tests/testthat/Rplots.pdf |binary tests/testthat/test_DatabasePrep.R | 4 - tests/testthat/test_JLL.R | 2 tests/testthat/test_Opt_NumOut_Boot_Graphs_Forecast_GVAR.R | 24 +++++--- tests/testthat/test_Opt_NumOut_Boot_Graphs_Forecast_JLL.R | 36 ++++++------- tests/testthat/test_Opt_NumOut_Boot_Graphs_Forecast_JPS.R | 26 ++++++--- vignettes/MultiATSM.Rmd | 2 vignettes/Paper-Replications.Rmd | 2 vignettes/build |only vignettes/references.bib | 22 +++++-- 17 files changed, 111 insertions(+), 82 deletions(-)
Title: Calculate the Dendritic Connectivity Index in River Networks
Description: Calculate and analyze ecological connectivity across the watercourse of river networks using the Dendritic Connectivity Index.
Author: Alex Arkilanian [aut, cre]
Maintainer: Alex Arkilanian <a.arkilanian@gmail.com>
Diff between dci versions 1.0.2 dated 2025-06-13 and 1.0.3 dated 2026-02-26
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/calculate_dci.R | 4 ++-- README.md | 2 +- build/vignette.rds |binary inst/doc/user_guide.Rmd | 2 +- inst/doc/user_guide.html | 4 ++-- tests/testthat/test-calculation.R | 8 ++++---- vignettes/user_guide.Rmd | 2 +- 9 files changed, 23 insertions(+), 23 deletions(-)
Title: Rocket-Fast Clinical Research Reporting
Description: Description of the tables, both grouped and not grouped, with some associated data management actions,
such as sorting the terms of the variables and deleting terms with zero numbers.
Author: USMR CHU de Bordeaux [aut, cre],
Valentine Renaudeau [aut],
Marion Kret [aut],
Matisse Decilap [aut],
Sahardid Mohamed Houssein [aut],
Thomas Ferte [aut]
Maintainer: USMR CHU de Bordeaux <astreinte.usmr@chu-bordeaux.fr>
Diff between RastaRocket versions 1.0.2 dated 2026-02-05 and 1.1.2 dated 2026-02-26
DESCRIPTION | 6 MD5 | 36 NEWS.md | 15 R/base_table.R | 62 - R/desc_ei_per_grade.R | 74 +- R/desc_ei_per_pt.R | 49 + R/desc_var_function.R | 30 R/df_builder_ae.R | 108 +- R/prepare_table.R | 6 inst/doc/DescribeAE.html | 456 ++++++------ inst/doc/RastaRocketVignette.R | 21 inst/doc/RastaRocketVignette.Rmd | 34 inst/doc/RastaRocketVignette.html | 1372 ++++++++++++++++++-------------------- inst/doc/SetupProject.html | 4 man/base_table.Rd | 8 man/desc_ei_per_grade.Rd | 29 man/desc_ei_per_pt.Rd | 18 man/desc_var.Rd | 9 vignettes/RastaRocketVignette.Rmd | 34 19 files changed, 1232 insertions(+), 1139 deletions(-)
Title: Named Capture to Data Tables
Description: User-friendly functions for extracting a data
table (row for each match, column for each group)
from non-tabular text data using regular expressions,
and for melting columns that match a regular expression.
Patterns are defined using a readable syntax
that makes it easy to build complex patterns
in terms of simpler, re-usable sub-patterns.
Named R arguments are translated to column names
in the output; capture groups without names are used
internally in order to provide a standard interface
to three regular expression 'C' libraries
('PCRE', 'RE2', 'ICU').
Output can also include numeric columns via
user-specified type conversion functions.
Author: Toby Hocking [aut, cre]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between nc versions 2025.3.24 dated 2025-04-09 and 2026.2.20 dated 2026-02-26
DESCRIPTION | 6 MD5 | 250 NAMESPACE | 39 NEWS | 481 - R/alevels.R | 110 R/alternatives.R | 380 - R/apply_type_funs.R | 158 R/before_match.R |only R/capture_all_str.R | 898 +- R/capture_first_df.R | 316 R/capture_first_glob.R | 234 R/capture_first_vec.R | 336 R/capture_longer_spec.R | 80 R/capture_melt_multiple.R | 310 R/capture_melt_single.R | 216 R/check_names.R | 154 R/field.R | 198 R/group.R | 118 R/measure.R | 338 R/only_captures.R | 28 R/quantifier.R | 128 R/stop_for.R | 100 R/try.R | 32 R/var_args_list.R | 280 build/vignette.rds |binary inst/CITATION |only inst/doc/v0-overview.R | 118 inst/doc/v0-overview.Rmd | 280 inst/doc/v0-overview.html | 1024 +- inst/doc/v1-capture-first.R | 428 - inst/doc/v1-capture-first.Rmd | 850 +- inst/doc/v1-capture-first.html | 2002 ++--- inst/doc/v2-capture-all.R | 238 inst/doc/v2-capture-all.Rmd | 514 - inst/doc/v2-capture-all.html | 1562 ++-- inst/doc/v3-capture-melt.R | 300 inst/doc/v3-capture-melt.Rmd | 640 - inst/doc/v3-capture-melt.html | 1665 ++-- inst/doc/v4-comparisons.R | 1030 +- inst/doc/v4-comparisons.Rmd | 1370 +-- inst/doc/v4-comparisons.html | 2694 +++---- inst/doc/v5-helpers.R | 172 inst/doc/v5-helpers.Rmd | 350 inst/doc/v5-helpers.html | 1030 +- inst/doc/v6-engines.R | 40 inst/doc/v6-engines.Rmd | 264 inst/doc/v6-engines.html | 969 +- inst/doc/v7-capture-glob.R | 314 inst/doc/v7-capture-glob.Rmd | 580 - inst/doc/v7-capture-glob.html | 1668 ++-- inst/extdata/MEDLINE_Fields.html | 3586 +++++----- inst/extdata/PMC3045577.nbib | 136 inst/extdata/RD12-0002_PP16HS_5sec_GM_F_1P.csv | 74 inst/extdata/ch14.qmd |only inst/extdata/chip-seq-chunk-db.R | 22 inst/extdata/chip-seq-chunk-db/H3K36me3_AM_immune/9/counts/McGill0101.bedGraph.head | 22 inst/extdata/chip-seq-chunk-db/H3K36me3_TDH_other/1/counts/McGill0019.bedGraph.head | 22 inst/extdata/chip-seq-chunk-db/H3K4me3_TDH_immune/9/counts/McGill0024.bedGraph.head | 22 inst/extdata/chip-seq-chunk-db/H3K4me3_XJ_immune/2/counts/McGill0024.bedGraph.head | 22 inst/extdata/compress-sizes.out | 12 inst/extdata/compress-times.out | 50 inst/extdata/invalid.R |only inst/extdata/namedCapture-refs.bib | 392 - inst/extdata/pepseq.txt | 6 inst/extdata/valid.R |only inst/extdata/vignette.Rmd | 460 - inst/extdata/vignette.Rnw | 794 +- inst/extdata/vignettes/v0-overview.Rmd | 204 inst/extdata/vignettes/v1-capture-first.Rmd | 842 +- inst/extdata/vignettes/v2-capture-all.Rmd | 506 - inst/extdata/vignettes/v3-capture-melt.Rmd | 630 - inst/extdata/vignettes/v4-comparisons.Rmd | 1360 +-- inst/extdata/vignettes/v5-helpers.Rmd | 354 inst/extdata/vignettes/v6-engines.Rmd | 256 inst/test_engines.R | 38 man/alevels.Rd | 110 man/alternatives.Rd | 94 man/alternatives_with_shared_groups.Rd | 184 man/altlist.Rd | 102 man/apply_type_funs.Rd | 52 man/before_match.Rd |only man/capture_all_str.Rd | 832 +- man/capture_first_df.Rd | 250 man/capture_first_glob.Rd | 234 man/capture_first_vec.Rd | 288 man/capture_longer_spec.Rd | 70 man/capture_melt_multiple.Rd | 312 man/capture_melt_single.Rd | 216 man/check_df_names.Rd | 36 man/check_names.Rd | 40 man/collapse_some.Rd | 46 man/field.Rd | 204 man/group.Rd | 128 man/measure.Rd | 62 man/measure_multiple.Rd | 48 man/measure_single.Rd | 48 man/melt_list.Rd | 42 man/only_captures.Rd | 40 man/quantifier.Rd | 124 man/stop_for_capture_same_as_id.Rd | 38 man/stop_for_engine.Rd | 34 man/stop_for_subject.Rd | 34 man/subject_var_args.Rd | 40 man/try_or_stop_print_pattern.Rd | 44 man/var_args_list.Rd | 98 tests/testthat.R | 6 tests/testthat/test-CRAN-all.R | 366 - tests/testthat/test-CRAN-alternatives.R | 400 - tests/testthat/test-CRAN-df.R | 798 +- tests/testthat/test-CRAN-dt.R | 46 tests/testthat/test-CRAN-errors.R | 288 tests/testthat/test-CRAN-field.R | 72 tests/testthat/test-CRAN-glob.R | 100 tests/testthat/test-CRAN-group.R | 56 tests/testthat/test-CRAN-longer.R | 48 tests/testthat/test-CRAN-measure.R | 92 tests/testthat/test-CRAN-melt.R | 266 tests/testthat/test-CRAN-multiple.R | 920 +- tests/testthat/test-CRAN-quantifier.R | 178 tests/testthat/test-CRAN-subject.R | 98 tests/testthat/test-CRAN-vec.R | 798 +- vignettes/v0-overview.Rmd | 280 vignettes/v1-capture-first.Rmd | 850 +- vignettes/v2-capture-all.Rmd | 514 - vignettes/v3-capture-melt.Rmd | 640 - vignettes/v4-comparisons.Rmd | 1370 +-- vignettes/v5-helpers.Rmd | 350 vignettes/v6-engines.Rmd | 264 vignettes/v7-capture-glob.Rmd | 580 - 129 files changed, 24144 insertions(+), 24188 deletions(-)
Title: Missingness-Aware Gaussian Mixture Models
Description: Parameter estimation and classification for Gaussian Mixture Models (GMMs) in the presence of missing data. This package complements existing implementations by allowing for both missing elements in the input vectors and full (as opposed to strictly diagonal) covariance matrices. Estimation is performed using an expectation conditional maximization algorithm that accounts for missingness of both the cluster assignments and the vector components. The output includes the marginal cluster membership probabilities; the mean and covariance of each cluster; the posterior probabilities of cluster membership; and a completed version of the input data, with missing values imputed to their posterior expectations. For additional details, please see McCaw ZR, Julienne H, Aschard H. "Fitting Gaussian mixture models on incomplete data." <doi:10.1186/s12859-022-04740-9>.
Author: Zachary McCaw [aut, cre]
Maintainer: Zachary McCaw <zmccaw@alumni.harvard.edu>
Diff between MGMM versions 1.0.1.1 dated 2023-09-30 and 1.0.1.3 dated 2026-02-26
MGMM-1.0.1.1/MGMM/build/partial.rdb |only MGMM-1.0.1.1/MGMM/inst/doc/MGMM.Rnw |only MGMM-1.0.1.1/MGMM/inst/doc/MGMM.pdf |only MGMM-1.0.1.1/MGMM/vignettes/MGMM.Rnw |only MGMM-1.0.1.1/MGMM/vignettes/Vignette.pdf |only MGMM-1.0.1.3/MGMM/DESCRIPTION | 33 ++-- MGMM-1.0.1.3/MGMM/MD5 | 103 ++++++------ MGMM-1.0.1.3/MGMM/NEWS.md |only MGMM-1.0.1.3/MGMM/R/01_Class.R | 22 ++ MGMM-1.0.1.3/MGMM/R/02_DataGen.R | 2 MGMM-1.0.1.3/MGMM/R/03_Expectations.R | 150 ++++++------------ MGMM-1.0.1.3/MGMM/R/04_Partition_Data.R | 25 +-- MGMM-1.0.1.3/MGMM/R/05_Single_MVN.R | 156 +++++++++---------- MGMM-1.0.1.3/MGMM/R/06_Mix_MVN.R | 172 ++++++++++----------- MGMM-1.0.1.3/MGMM/R/07_Estimation.R | 147 ++++++----------- MGMM-1.0.1.3/MGMM/R/08_Clustering.R | 133 +++++++++------- MGMM-1.0.1.3/MGMM/R/09_Imputation.R | 59 ++++--- MGMM-1.0.1.3/MGMM/R/MGMM-package.R | 14 + MGMM-1.0.1.3/MGMM/R/RcppExports.R | 5 MGMM-1.0.1.3/MGMM/README.md |only MGMM-1.0.1.3/MGMM/build/vignette.rds |binary MGMM-1.0.1.3/MGMM/inst/doc/Documentation.pdf |only MGMM-1.0.1.3/MGMM/inst/doc/MGMM.R |only MGMM-1.0.1.3/MGMM/inst/doc/MGMM.Rmd |only MGMM-1.0.1.3/MGMM/inst/doc/MGMM.html |only MGMM-1.0.1.3/MGMM/man/CalHar.Rd | 13 - MGMM-1.0.1.3/MGMM/man/ChooseK.Rd | 4 MGMM-1.0.1.3/MGMM/man/ClustQual.Rd | 8 MGMM-1.0.1.3/MGMM/man/CombineMIs.Rd | 12 - MGMM-1.0.1.3/MGMM/man/DavBou.Rd | 12 - MGMM-1.0.1.3/MGMM/man/FitGMM.Rd | 17 +- MGMM-1.0.1.3/MGMM/man/FitMVN.Rd | 7 MGMM-1.0.1.3/MGMM/man/FitMix.Rd | 4 MGMM-1.0.1.3/MGMM/man/GenImputation.Rd | 15 + MGMM-1.0.1.3/MGMM/man/MGMM-package.Rd | 10 - MGMM-1.0.1.3/MGMM/man/MixUpdateMeans.Rd | 2 MGMM-1.0.1.3/MGMM/man/PartitionData.Rd | 7 MGMM-1.0.1.3/MGMM/man/ReconstituteData.Rd | 8 MGMM-1.0.1.3/MGMM/man/logLik.mix.Rd | 8 MGMM-1.0.1.3/MGMM/man/logLik.mvn.Rd | 8 MGMM-1.0.1.3/MGMM/man/mean.mix.Rd | 3 MGMM-1.0.1.3/MGMM/man/mean.mvn.Rd | 3 MGMM-1.0.1.3/MGMM/man/print.mix.Rd | 5 MGMM-1.0.1.3/MGMM/man/print.mvn.Rd | 7 MGMM-1.0.1.3/MGMM/man/rGMM.Rd | 2 MGMM-1.0.1.3/MGMM/man/vcov.mix.Rd | 3 MGMM-1.0.1.3/MGMM/man/vcov.mvn.Rd | 3 MGMM-1.0.1.3/MGMM/src/Covariance.cpp | 26 +-- MGMM-1.0.1.3/MGMM/src/RcppExports.cpp | 9 - MGMM-1.0.1.3/MGMM/tests/testthat/test-clusters.R | 31 +++ MGMM-1.0.1.3/MGMM/tests/testthat/test-cov.R |only MGMM-1.0.1.3/MGMM/tests/testthat/test-gmm.R | 90 ++++++++-- MGMM-1.0.1.3/MGMM/tests/testthat/test-imputation.R | 14 + MGMM-1.0.1.3/MGMM/tests/testthat/test-inputs.R |only MGMM-1.0.1.3/MGMM/tests/testthat/test-mvn.R | 44 ++++- MGMM-1.0.1.3/MGMM/tests/testthat/test-partition.R | 18 ++ MGMM-1.0.1.3/MGMM/tests/testthat/test-rGMM.R |only MGMM-1.0.1.3/MGMM/vignettes/MGMM.Rmd |only MGMM-1.0.1.3/MGMM/vignettes/MGMM_cache |only 59 files changed, 801 insertions(+), 613 deletions(-)
Title: Constant Temperature Equivalent
Description: Under natural conditions, nest temperatures fluctuate daily around a mean
value, whereas in captivity they are often held constant. The Constant
Temperature Equivalent is designed to bridge the gap between the two by
calculating a single temperature value for wild nests that corresponds with
the amount of development that would occur in an incubator set to the same
temperature. The theory and formulas behind this method were developed by
Professor Author Georges and are implemented here as a single function.
Author: Donald T. McKnight [aut, cre]
Maintainer: Donald T. McKnight <donald.mcknight@my.jcu.edu.au>
Diff between CTE versions 0.1.3 dated 2026-01-23 and 0.1.5 dated 2026-02-26
CTE-0.1.3/CTE/NEWS.md |only CTE-0.1.3/CTE/README.md |only CTE-0.1.5/CTE/DESCRIPTION | 8 ++--- CTE-0.1.5/CTE/MD5 | 14 ++++------ CTE-0.1.5/CTE/R/CTE.R | 6 ++-- CTE-0.1.5/CTE/inst/doc/cte_constant_temperature_equivalent_vignette.Rmd | 8 +++-- CTE-0.1.5/CTE/inst/doc/cte_constant_temperature_equivalent_vignette.pdf |binary CTE-0.1.5/CTE/man/CTE.Rd | 6 ++-- CTE-0.1.5/CTE/vignettes/cte_constant_temperature_equivalent_vignette.Rmd | 8 +++-- 9 files changed, 26 insertions(+), 24 deletions(-)
Title: Access and Harmonize Childfree Demographic Data
Description: Reads demographic data from a variety of public data sources, extracting and harmonizing variables useful for the study of childfree individuals. The identification of childfree individuals and those with other family statuses uses Neal & Neal's (2024) "A Framework for Studying Adults who Neither have Nor Want Children" <doi:10.1177/10664807231198869>; A pre-print is available at <doi:10.31234/osf.io/fa89m>.
Author: Zachary Neal [aut, cre] ,
Jennifer Watling Neal [aut]
Maintainer: Zachary Neal <zpneal@msu.edu>
Diff between childfree versions 0.0.4 dated 2025-03-20 and 0.0.5 dated 2026-02-26
DESCRIPTION | 17 ++-- MD5 | 28 ++++---- NEWS.md | 7 +- R/nsfg.R | 166 ++++++++++++++++++++++++++++++++++++++++++++++-- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/childfree.Rmd | 4 - inst/doc/childfree.html | 31 ++------ inst/doc/codebooks.Rmd | 11 ++- inst/doc/codebooks.html | 78 ++++++++++++++++++---- man/childfree.Rd | 3 man/nsfg.Rd | 2 vignettes/childfree.Rmd | 4 - vignettes/codebooks.Rmd | 11 ++- 15 files changed, 289 insertions(+), 75 deletions(-)
Title: General Purpose Client for 'ERDDAP™' Servers
Description: General purpose R client for 'ERDDAP™' servers. Includes
functions to search for 'datasets', get summary information on
'datasets', and fetch 'datasets', in either 'csv' or 'netCDF' format.
'ERDDAP™' information:
<https://upwell.pfeg.noaa.gov/erddap/information.html>.
Author: Scott Chamberlain [aut],
Ben Tupper [ctb],
Salvador Jesus Fernandez Bejarano [ctb],
Roy Mendelssohn [cre, ctb]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddap versions 1.2.2 dated 2026-01-15 and 1.2.3 dated 2026-02-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/zzz.r | 2 +- inst/doc/Using_rerddap.html | 4 ++-- 5 files changed, 16 insertions(+), 11 deletions(-)
Title: Portable Emissions (and Other Mobile) Measurement System
Utilities
Description: Utility functions for the handling, analysis and visualisation of data from portable emissions
measurement systems ('PEMS') and other similar mobile activity monitoring devices. The package
includes a dedicated 'pems' data class that manages many of the quality control, unit handling
and data archiving issues that can hinder efforts to standardise 'PEMS' research.
Author: Karl Ropkins [aut, cre],
Adrian Felipe Ortega Calle [ctb]
Maintainer: Karl Ropkins <karl.ropkins@gmail.com>
Diff between pems.utils versions 0.3.0.8 dated 2025-06-20 and 0.3.1.2 dated 2026-02-26
pems.utils-0.3.0.8/pems.utils/man/8.1.tidyverse.tools.Rd |only pems.utils-0.3.0.8/pems.utils/man/9.1.example.data.Rd |only pems.utils-0.3.0.8/pems.utils/man/9.2.look.up.tables.Rd |only pems.utils-0.3.1.2/pems.utils/DESCRIPTION | 20 pems.utils-0.3.1.2/pems.utils/MD5 | 22 - pems.utils-0.3.1.2/pems.utils/NAMESPACE | 35 + pems.utils-0.3.1.2/pems.utils/NEWS | 6 pems.utils-0.3.1.2/pems.utils/R/calcSpeedEm.R | 13 pems.utils-0.3.1.2/pems.utils/R/pems.plots.R | 4 pems.utils-0.3.1.2/pems.utils/R/tidyverse.tools.R | 306 ++------------- pems.utils-0.3.1.2/pems.utils/R/time.handlers.R | 20 pems.utils-0.3.1.2/pems.utils/man/8.1.example.data.Rd |only pems.utils-0.3.1.2/pems.utils/man/8.2.look.up.tables.Rd |only pems.utils-0.3.1.2/pems.utils/man/9.1.tidyverse.tools.Rd |only pems.utils-0.3.1.2/pems.utils/man/pems.utils-package.Rd | 7 15 files changed, 134 insertions(+), 299 deletions(-)
Title: An R Client to the 'PatentsView' API
Description: Provides functions to simplify the 'PatentsView' API
(<https://search.patentsview.org/docs/docs/Search%20API/SearchAPIReference/#api-query-language>) query language,
send GET and POST requests to the API's twenty seven endpoints, and parse the data
that comes back.
Author: Christopher Baker [aut, cre],
Russ Allen [aut]
Maintainer: Christopher Baker <chriscrewbaker@gmail.com>
Diff between patentsview versions 0.3.0 dated 2021-09-25 and 1.0.0 dated 2026-02-26
patentsview-0.3.0/patentsview/R/cast-pv-data.R |only patentsview-0.3.0/patentsview/R/get-fields.R |only patentsview-0.3.0/patentsview/R/process-error.R |only patentsview-0.3.0/patentsview/R/zzz.R |only patentsview-0.3.0/patentsview/man/cast_pv_data.Rd |only patentsview-0.3.0/patentsview/tests/testthat/test-arg-validation.R |only patentsview-0.3.0/patentsview/tests/testthat/test-cast-pv-data.R |only patentsview-1.0.0/patentsview/DESCRIPTION | 32 patentsview-1.0.0/patentsview/LICENSE | 4 patentsview-1.0.0/patentsview/MD5 | 101 + patentsview-1.0.0/patentsview/NAMESPACE | 33 patentsview-1.0.0/patentsview/R/check-query.R | 151 +- patentsview-1.0.0/patentsview/R/data.R | 36 patentsview-1.0.0/patentsview/R/get-attribute-helpers.R |only patentsview-1.0.0/patentsview/R/patentsview-package.R |only patentsview-1.0.0/patentsview/R/print.R | 120 - patentsview-1.0.0/patentsview/R/process-resp.R | 122 + patentsview-1.0.0/patentsview/R/query-dsl.R | 344 ++--- patentsview-1.0.0/patentsview/R/search-pv.R | 667 ++++++---- patentsview-1.0.0/patentsview/R/sysdata.rda |binary patentsview-1.0.0/patentsview/R/unnest-pv-data.R | 217 +-- patentsview-1.0.0/patentsview/R/utils.R | 58 patentsview-1.0.0/patentsview/R/validate-args.R | 172 +- patentsview-1.0.0/patentsview/README.md | 147 +- patentsview-1.0.0/patentsview/data/fieldsdf.rda |binary patentsview-1.0.0/patentsview/man/fieldsdf.Rd | 56 patentsview-1.0.0/patentsview/man/figures |only patentsview-1.0.0/patentsview/man/get_endpoints.Rd | 43 patentsview-1.0.0/patentsview/man/get_fields.Rd | 108 - patentsview-1.0.0/patentsview/man/get_ok_pk.Rd | 54 patentsview-1.0.0/patentsview/man/patentsview-package.Rd |only patentsview-1.0.0/patentsview/man/qry_funs.Rd | 152 +- patentsview-1.0.0/patentsview/man/retrieve_linked_data.Rd |only patentsview-1.0.0/patentsview/man/search_pv.Rd | 335 ++--- patentsview-1.0.0/patentsview/man/unnest_pv_data.Rd | 91 - patentsview-1.0.0/patentsview/man/with_qfuns.Rd | 96 - patentsview-1.0.0/patentsview/tests/testthat.R | 8 patentsview-1.0.0/patentsview/tests/testthat/README.md |only patentsview-1.0.0/patentsview/tests/testthat/_vcr |only patentsview-1.0.0/patentsview/tests/testthat/helper-vcr.R |only patentsview-1.0.0/patentsview/tests/testthat/helpers.R |only patentsview-1.0.0/patentsview/tests/testthat/test-api-bugs.R |only patentsview-1.0.0/patentsview/tests/testthat/test-check-query.R |only patentsview-1.0.0/patentsview/tests/testthat/test-former-api-bugs.R |only patentsview-1.0.0/patentsview/tests/testthat/test-search-pv.R | 237 +-- patentsview-1.0.0/patentsview/tests/testthat/test-unnest-pv-data.R | 106 + 46 files changed, 1933 insertions(+), 1557 deletions(-)
Title: Resampling Algorithms for 'mlr3' Framework
Description: A supervised learning algorithm inputs a train set,
and outputs a prediction function, which can be used on a test set.
If each data point belongs to a subset
(such as geographic region, year, etc), then
how do we know if subsets are similar enough so that
we can get accurate predictions on one subset,
after training on Other subsets?
And how do we know if training on All subsets would improve
prediction accuracy, relative to training on the Same subset?
SOAK, Same/Other/All K-fold cross-validation, <doi:10.48550/arXiv.2410.08643>
can be used to answer these questions, by fixing a test subset,
training models on Same/Other/All subsets, and then
comparing test error rates (Same versus Other and Same versus All).
Also provides code for estimating how many train samples
are required to get accurate predictions on a test set.
Author: Toby Hocking [aut, cre] ,
Michel Lang [ctb] ,
Bernd Bischl [ctb] ,
Jakob Richter [ctb] ,
Patrick Schratz [ctb] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [ctb],
Florian Pfisterer [ctb] ,
Raphael Sonabend [ctb] , [...truncated...]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between mlr3resampling versions 2025.11.19 dated 2025-11-20 and 2026.2.24 dated 2026-02-26
DESCRIPTION | 12 ++++---- MD5 | 17 ++++++----- NEWS | 8 +++++ R/proj.R | 12 ++++---- inst/CITATION |only inst/doc/Newer_resamplers.html | 60 ++++++++++++++++++++++------------------- inst/doc/Older_resamplers.html | 55 ++++++++++++++++++------------------- man/proj_compute.Rd | 6 +++- man/proj_submit.Rd | 11 +++++-- tests/testthat/test-CRAN.R | 9 ++++-- 10 files changed, 110 insertions(+), 80 deletions(-)
More information about mlr3resampling at CRAN
Permanent link
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt' (<DOI:10.32614/CRAN.package.mlt>, <DOI:10.32614/CRAN.package.mlt.docreg>).
Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Barbanti and Hothorn, 2022,
<DOI:10.1093/biostatistics/kxac048>) and a tutorial explains applications in survival analysis
(Siegfried et al., 2025, <DOI:10.48550/arXiv.2402.06428>). Multivariate conditional transformation models
(Klein et al, 2022, <DOI:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023,
<DOI:10.108 [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Luisa Barbanti [ctb] ,
Sandra Siegfried [aut] ,
Lucas Kook [aut] ,
Susanne Dandl [ctb] ,
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 1.3-2 dated 2025-12-15 and 1.4-0 dated 2026-02-26
tram-1.3-2/tram/vignettes/mlt.bib |only tram-1.4-0/tram/DESCRIPTION | 12 tram-1.4-0/tram/MD5 | 70 tram-1.4-0/tram/build/partial.rdb |binary tram-1.4-0/tram/build/vignette.rds |binary tram-1.4-0/tram/inst/NEWS.Rd | 7 tram-1.4-0/tram/inst/REFERENCES.bib |only tram-1.4-0/tram/inst/doc/NAMI.R | 2 tram-1.4-0/tram/inst/doc/NAMI.Rnw | 4 tram-1.4-0/tram/inst/doc/NAMI.pdf |binary tram-1.4-0/tram/inst/doc/mtram.R | 2 tram-1.4-0/tram/inst/doc/mtram.Rnw | 22 tram-1.4-0/tram/inst/doc/mtram.pdf |binary tram-1.4-0/tram/inst/doc/survtram.Rnw | 43 tram-1.4-0/tram/inst/doc/survtram.pdf |binary tram-1.4-0/tram/inst/doc/tram.Rnw | 16 tram-1.4-0/tram/inst/doc/tram.pdf |binary tram-1.4-0/tram/man/Aareg.Rd | 10 tram-1.4-0/tram/man/BoxCox.Rd | 10 tram-1.4-0/tram/man/Colr.Rd | 15 tram-1.4-0/tram/man/Compris.Rd | 17 tram-1.4-0/tram/man/Coxph.Rd | 21 tram-1.4-0/tram/man/Lehmann.Rd | 12 tram-1.4-0/tram/man/Lm.Rd | 8 tram-1.4-0/tram/man/Polr.Rd | 8 tram-1.4-0/tram/man/Survreg.Rd | 9 tram-1.4-0/tram/man/mmlt.Rd | 16 tram-1.4-0/tram/man/mtram.Rd | 10 tram-1.4-0/tram/man/robust_score_test.Rd | 17 tram-1.4-0/tram/man/score_test.Rd | 19 tram-1.4-0/tram/man/tram-methods.Rd | 7 tram-1.4-0/tram/man/tram.Rd | 16 tram-1.4-0/tram/vignettes/NAMI.Rnw | 4 tram-1.4-0/tram/vignettes/mtram.Rnw | 22 tram-1.4-0/tram/vignettes/survtram.Rnw | 43 tram-1.4-0/tram/vignettes/survtram.bib | 3482 ++----------------------------- tram-1.4-0/tram/vignettes/tram.Rnw | 16 37 files changed, 484 insertions(+), 3456 deletions(-)
Title: Compare Ordinal Endpoints Using Simulations
Description: Simultaneously evaluate multiple ordinal outcome measures. Applied data analysts in particular are faced with uncertainty in choosing appropriate statistical tests for ordinal data. The included 'shiny' application allows users to simulate outcomes given different ordinal data distributions.
Author: Pat Callahan [aut, cre, cph]
Maintainer: Pat Callahan <patricktcallahan18@gmail.com>
Diff between ordinalsimr versions 0.2.3 dated 2025-09-08 and 0.2.4 dated 2026-02-26
DESCRIPTION | 6 - MD5 | 22 ++--- NEWS.md | 5 + R/assign_groups.R | 4 R/run_simulations.R | 72 +++++++++------- build/vignette.rds |binary inst/doc/coding-simulations.html | 44 +++++----- inst/doc/ordinalsimr.R | 5 - inst/doc/ordinalsimr.Rmd | 84 ++++++++++++------- inst/doc/ordinalsimr.html | 171 +++++++++++++++++++-------------------- tests/testthat/test-zzz.R | 99 ++++++---------------- vignettes/ordinalsimr.Rmd | 84 ++++++++++++------- 12 files changed, 313 insertions(+), 283 deletions(-)
Title: Fast Imputations Using 'Rcpp' and 'Armadillo'
Description: Fast imputations under the object-oriented programming paradigm.
Moreover there are offered a few functions built to work with popular R packages such as 'data.table' or 'dplyr'.
The biggest improvement in time performance can be achieved for a calculation where a grouping variable is used.
A single evaluation of a quantitative model for the multiple imputations is another major enhancement.
A new major improvement is one of the fastest predictive mean matching in the R world because of presorting and binary search.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between miceFast versions 0.8.5 dated 2025-02-03 and 0.9.1 dated 2026-02-26
DESCRIPTION | 14 MD5 | 67 - NAMESPACE | 5 NEWS.md | 47 + R/RcppExports.R | 13 R/VIF.R | 12 R/fill_NA.R | 310 ++----- R/fill_NA_N.R | 365 +++----- R/plots.R | 26 R/pool.R |only README.md | 111 ++ build/vignette.rds |binary inst/doc/miceFast-intro.R | 502 +++++++---- inst/doc/miceFast-intro.Rmd | 836 +++++++++++-------- inst/doc/miceFast-intro.html | 1312 ++++++++++++++++++++---------- inst/doc/missing-data-and-imputation.R |only inst/doc/missing-data-and-imputation.Rmd |only inst/doc/missing-data-and-imputation.html |only inst/extdata/performance_validity.R | 536 +++++++++--- man/fill_NA.Rd | 234 ----- man/fill_NA_N.Rd | 243 ----- man/neibo.Rd | 12 man/pool.Rd |only man/print.miceFast_pool.Rd |only man/summary.miceFast_pool.Rd |only man/upset_NA.Rd | 10 src/R_funs.cpp | 253 +++-- src/corrData.cpp | 67 - src/miceFast.h | 118 +- src/miceFast_additfunc.cpp | 85 - src/miceFast_class.cpp | 810 ++++++++---------- src/miceFast_quantmodels.cpp | 563 +++++------- tests/testthat/test-fcs.R |only tests/testthat/test-fill_NA_funcs.R | 1189 ++++++++++++++++++--------- tests/testthat/test-plot.R | 1 tests/testthat/test-pmm.R |only tests/testthat/test-pool.R |only tests/testthat/test-vif.R | 68 + vignettes/miceFast-intro.Rmd | 836 +++++++++++-------- vignettes/missing-data-and-imputation.Rmd |only 40 files changed, 4913 insertions(+), 3732 deletions(-)
Title: Data Processing for Aquatic Ecology
Description: Facilitate the analysis of data related to aquatic ecology, specifically the establishment of carbon budget.
Currently, the package allows the below analysis.
(i) the calculation of greenhouse gas flux based on data obtained from trace gas analyzer using the method described in Lin et al. (2024).
(ii) the calculation of Dissolved Oxygen (DO) metabolism based on data obtained from dissolved oxygen data logger using the method described in Staehr et al. (2010).
Yong et al. (2024) <doi:10.5194/bg-21-5247-2024>.
Staehr et al. (2010) <doi:10.4319/lom.2010.8.0628>.
Author: Zhao-Jun Yong [cre, aut]
Maintainer: Zhao-Jun Yong <nuannuan0425@gmail.com>
Diff between aelab versions 1.1.0 dated 2026-02-23 and 1.1.1 dated 2026-02-26
DESCRIPTION | 6 - MD5 | 12 +- README.md | 30 ++++-- inst/doc/aelab.R | 63 +++++++++++++ inst/doc/aelab.Rmd | 124 +++++++++++++++++++++++++ inst/doc/aelab.html | 252 ++++++++++++++++++++++++++++++++++++++++++++++++---- vignettes/aelab.Rmd | 124 +++++++++++++++++++++++++ 7 files changed, 581 insertions(+), 30 deletions(-)
Title: Angular Distance Weighting Interpolation
Description: The irregularly-spaced data are interpolated onto regular latitude-longitude grids by weighting each station according to its distance and angle from the center of a search radius. In addition to this, we also provide a simple way (Jones and Hulme, 1996) to grid the irregularly-spaced data points onto regular latitude-longitude grids by averaging all stations in grid-boxes. This study was supported by the National Natural Science Foundation of China (NSFC, Grant No. 42205177).
Author: Panfeng Zhang [aut, cre] ,
Guoyu Ren [ctb],
Yun Qin [ctb],
Chenchen Ren [ctb],
Xiang Zheng [ctb]
Maintainer: Panfeng Zhang <zhangpf08@163.com>
Diff between adw versions 0.4.1 dated 2025-09-13 and 0.4.2 dated 2026-02-26
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 8 ++++++-- build/vignette.rds |binary inst/doc/Introduction.Rmd | 4 +++- inst/doc/Introduction.html | 12 +++++++----- vignettes/Introduction.Rmd | 4 +++- 7 files changed, 29 insertions(+), 19 deletions(-)
Title: Statistical Tools Designed for End Users
Description: The statistical tools in this package do one of four things:
1) Enhance basic statistical functions with more
flexible inputs, smarter defaults, and richer, clearer, and ready-to-use
output (e.g., t.test2())
2) Produce publication-ready commonly needed figures with one line of code (e.g., plot_cdf())
3) Implement novel analytical tools developed by the authors (e.g., twolines())
4) Deliver niche functions of high value to the authors that are not easily
available elsewhere (e.g., clear(), convert_to_sql(), resize_images()).
Author: Uri Simonsohn [aut, cre]
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between statuser versions 0.1.8 dated 2026-02-09 and 0.1.9 dated 2026-02-26
statuser-0.1.8/statuser/tests/testthat/test-clear.R |only statuser-0.1.9/statuser/DESCRIPTION | 6 statuser-0.1.9/statuser/MD5 | 56 - statuser-0.1.9/statuser/R/clear.R | 78 + statuser-0.1.9/statuser/R/desc_var.R | 14 statuser-0.1.9/statuser/R/lm2.R | 135 +- statuser-0.1.9/statuser/R/plot_cdf.R | 225 +++- statuser-0.1.9/statuser/R/plot_density.R | 222 +++- statuser-0.1.9/statuser/R/plot_freq.R | 359 +++++-- statuser-0.1.9/statuser/R/scatter.gam.R | 115 +- statuser-0.1.9/statuser/R/t.test2.R | 22 statuser-0.1.9/statuser/R/table2.R | 21 statuser-0.1.9/statuser/R/twolines.R | 2 statuser-0.1.9/statuser/R/utils.R | 147 ++ statuser-0.1.9/statuser/R/zzz.R | 6 statuser-0.1.9/statuser/README.md | 41 statuser-0.1.9/statuser/man/clear.Rd | 31 statuser-0.1.9/statuser/man/evaluate_variable_arguments.Rd |only statuser-0.1.9/statuser/man/lm2.Rd | 2 statuser-0.1.9/statuser/man/plot_cdf.Rd | 25 statuser-0.1.9/statuser/man/plot_density.Rd | 27 statuser-0.1.9/statuser/man/plot_freq.Rd | 36 statuser-0.1.9/statuser/tests/testthat/Rplots.pdf |binary statuser-0.1.9/statuser/tests/testthat/_snaps/lm2.md | 22 statuser-0.1.9/statuser/tests/testthat/test-gam_functions.R | 605 ++++++------ statuser-0.1.9/statuser/tests/testthat/test-lm2.R | 24 statuser-0.1.9/statuser/tests/testthat/test-plot_cdf.R | 110 ++ statuser-0.1.9/statuser/tests/testthat/test-plot_density.R | 94 + statuser-0.1.9/statuser/tests/testthat/test-plot_freq.R | 350 ++++++ statuser-0.1.9/statuser/tests/testthat/test-table2.R | 108 ++ 30 files changed, 2168 insertions(+), 715 deletions(-)
Title: Example Datasets for Clinical Submission Readiness
Description: Provides realistic synthetic example datasets for the R4SUB
(R for Regulatory Submission) ecosystem. Includes a pharma study evidence
table, ADaM (Analysis Data Model) and SDTM (Study Data Tabulation Model)
metadata following CDISC (Clinical Data Interchange Standards Consortium)
conventions (<https://www.cdisc.org>), traceability mappings, a risk
register based on ICH (International Council for Harmonisation) Q9
quality risk management principles
(<https://www.ich.org/page/quality-guidelines>), and regulatory indicator
definitions. Designed for demos, vignettes, and package testing.
Author: Pawan Rama Mali [aut, cre, cph]
Maintainer: Pawan Rama Mali <prm@outlook.in>
Diff between r4subdata versions 0.1.0 dated 2026-02-20 and 0.1.1 dated 2026-02-26
DESCRIPTION | 6 - MD5 | 7 + NEWS.md |only README.md | 135 ++++++++++++++++++---------------- tests/testthat/test-evidence_pharma.R | 5 - 5 files changed, 79 insertions(+), 74 deletions(-)
Title: Simulate and Test Marker Dosage for Dominant Markers in
Autopolyploids
Description: Perform classic chi-squared tests and Ripol et al(1999)
binomial confidence interval approach for autopolyploid
dominant markers. Also, dominant markers may be generated
for families of offspring where either one or both of the
parents possess the marker. Missing values and
misclassified markers may be generated at random.
Author: Peter Baker [aut, cre]
Maintainer: Peter Baker <drpetebaker@gmail.com>
Diff between polySegratio versions 0.2-5 dated 2018-03-22 and 0.2-6 dated 2026-02-26
polySegratio-0.2-5/polySegratio/CHANGELOG |only polySegratio-0.2-5/polySegratio/inst/doc/polySegratio-overview.Rnw |only polySegratio-0.2-5/polySegratio/inst/doc/polySegratio-overview.pdf |only polySegratio-0.2-5/polySegratio/vignettes/polySegratio-overview.Rnw |only polySegratio-0.2-6/polySegratio/DESCRIPTION | 22 +- polySegratio-0.2-6/polySegratio/MD5 | 68 +++---- polySegratio-0.2-6/polySegratio/NEWS.md |only polySegratio-0.2-6/polySegratio/R/addMisclass.R | 11 - polySegratio-0.2-6/polySegratio/R/addMissing.R | 11 - polySegratio-0.2-6/polySegratio/R/test.segRatio.R | 12 - polySegratio-0.2-6/polySegratio/README.md | 2 polySegratio-0.2-6/polySegratio/build/vignette.rds |binary polySegratio-0.2-6/polySegratio/inst/doc/polySegratio-overview.R | 94 +++------- polySegratio-0.2-6/polySegratio/inst/doc/polySegratio-overview.Rmd |only polySegratio-0.2-6/polySegratio/inst/doc/polySegratio-overview.html |only polySegratio-0.2-6/polySegratio/man/addMisclass.Rd | 60 ++---- polySegratio-0.2-6/polySegratio/man/addMissing.Rd | 2 polySegratio-0.2-6/polySegratio/man/autoFill.Rd | 2 polySegratio-0.2-6/polySegratio/man/divide.autoMarkers.Rd | 14 - polySegratio-0.2-6/polySegratio/man/divideAutoMarkers.Rd | 37 +-- polySegratio-0.2-6/polySegratio/man/expected.segRatio.Rd | 15 - polySegratio-0.2-6/polySegratio/man/makeLabel.Rd | 2 polySegratio-0.2-6/polySegratio/man/plot.segRatio.Rd | 12 - polySegratio-0.2-6/polySegratio/man/polySegratio-package.Rd | 16 - polySegratio-0.2-6/polySegratio/man/print.segRatio.Rd | 2 polySegratio-0.2-6/polySegratio/man/print.simAutoMarkers.Rd | 2 polySegratio-0.2-6/polySegratio/man/print.testSegRatio.Rd | 2 polySegratio-0.2-6/polySegratio/man/segRatio.Rd | 2 polySegratio-0.2-6/polySegratio/man/segregationRatios.Rd | 2 polySegratio-0.2-6/polySegratio/man/sim.autoCross.Rd | 2 polySegratio-0.2-6/polySegratio/man/sim.autoMarkers.Rd | 28 +- polySegratio-0.2-6/polySegratio/man/simAutoCross.Rd | 32 +-- polySegratio-0.2-6/polySegratio/man/simAutoMarkers.Rd | 10 - polySegratio-0.2-6/polySegratio/man/test.segRatio.Rd | 23 +- polySegratio-0.2-6/polySegratio/man/testSegRatio.Rd | 12 - polySegratio-0.2-6/polySegratio/vignettes/polySegratio-overview.Rmd |only polySegratio-0.2-6/polySegratio/vignettes/tmp/tmp-007.pdf |binary polySegratio-0.2-6/polySegratio/vignettes/tmp/tmp-009.pdf |binary polySegratio-0.2-6/polySegratio/vignettes/tmp/tmp-010.pdf |binary 39 files changed, 224 insertions(+), 273 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers.
Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic
signatures can either be created and verified manually or via x509 certificates.
AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric
(public key) encryption or EC for Diffie Hellman. High-level envelope functions
combine RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random
number generator, and 'bignum' math methods for manually performing crypto
calculations on large multibyte integers.
Author: Jeroen Ooms [aut, cre] ,
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between openssl versions 2.3.4 dated 2025-09-30 and 2.3.5 dated 2026-02-26
DESCRIPTION | 6 ++-- MD5 | 24 +++++++++--------- NEWS | 3 ++ R/init.R | 6 ++++ build/vignette.rds |binary inst/doc/bignum.html | 34 +++++++++++++------------- inst/doc/crypto_hashing.html | 10 +++---- inst/doc/keys.html | 50 +++++++++++++++++++-------------------- inst/doc/secure_rng.html | 20 +++++++-------- src/compatibility.h | 1 src/pem.c | 3 ++ src/signing.c | 3 +- tests/testthat/test_keys_ecdsa.R | 9 +++++++ 13 files changed, 96 insertions(+), 73 deletions(-)
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions used in
'mlr3' and its companion packages. Comes with helper functions for
functional programming, for printing, to work with 'data.table', as
well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Patrick Schratz [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3misc versions 0.20.0 dated 2026-02-20 and 0.21.0 dated 2026-02-26
DESCRIPTION | 6 +- MD5 | 18 +++--- NEWS.md | 8 ++ R/conditions.R | 64 ++++++++++++++++------ R/encapsulate.R | 103 ++++++++++++++++-------------------- man/encapsulate.Rd | 63 +++++++++++----------- man/mlr_conditions.Rd | 16 +++-- tests/testthat/_snaps/conditions.md | 41 ++++++++++++++ tests/testthat/test_conditions.R | 18 ++++++ tests/testthat/test_encapsulate.R | 29 ++++------ 10 files changed, 227 insertions(+), 139 deletions(-)
Title: Simulation and Plots for Fossil and Taxonomy Data
Description: Simulating and plotting taxonomy and fossil data on phylogenetic trees under mechanistic
models of speciation, preservation and sampling.
Author: Rachel Warnock [aut, cph],
Joelle Barido-Sottani [aut, cre, cph],
Walker Pett [aut, cph],
Joseph O'Reilly [aut, cph],
Ugnė Stolz [aut, cph]
Maintainer: Joelle Barido-Sottani <joelle.barido-sottani@m4x.org>
Diff between FossilSim versions 2.4.3 dated 2025-11-06 and 2.4.4 dated 2026-02-26
DESCRIPTION | 22 MD5 | 42 - NAMESPACE | 5 NEWS.md | 189 ++-- R/FossilSim.R | 102 +- R/fbdrange.R | 2 R/plot.fbdrange.R | 494 ++++++----- R/subsampling.R | 51 - build/vignette.rds |binary inst/doc/SAtree.R | 42 - inst/doc/SAtree.html | 954 +++++++++++------------ inst/doc/fossils.R | 582 +++++++------- inst/doc/fossils.html | 1980 ++++++++++++++++++++++++------------------------ inst/doc/intro.R | 62 - inst/doc/intro.html | 994 ++++++++++++------------ inst/doc/paleotree.R | 44 - inst/doc/paleotree.html | 1050 ++++++++++--------------- inst/doc/simfbd.R | 48 - inst/doc/simfbd.html | 932 +++++++++++----------- inst/doc/taxonomy.R | 112 +- inst/doc/taxonomy.html | 1310 +++++++++++++++---------------- man/FossilSim.Rd | 6 22 files changed, 4414 insertions(+), 4609 deletions(-)
Title: Parallel Simulator
Description: Perform flexible simulation studies using one or multiple computer
cores. The package is set up to be usable on high-performance clusters in
addition to being run locally (i.e., see the package vignettes for more
information).
Author: Sacha Epskamp [aut, cre] ,
Xinkai Du [ctb],
Mihai Constantin [aut]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between parSim versions 0.1.5 dated 2023-05-16 and 0.3.1 dated 2026-02-26
parSim-0.1.5/parSim/NEWS |only parSim-0.3.1/parSim/DESCRIPTION | 62 +++- parSim-0.3.1/parSim/MD5 | 22 + parSim-0.3.1/parSim/NAMESPACE | 34 +- parSim-0.3.1/parSim/NEWS.md |only parSim-0.3.1/parSim/R/parSim.R | 426 ++++++++++++++++++++---------- parSim-0.3.1/parSim/R/parSim_dt.R | 211 ++++++++------ parSim-0.3.1/parSim/README.md | 273 +++++++++++++------ parSim-0.3.1/parSim/build |only parSim-0.3.1/parSim/inst |only parSim-0.3.1/parSim/man/configure_bar.Rd |only parSim-0.3.1/parSim/man/figures |only parSim-0.3.1/parSim/man/parSim-package.Rd |only parSim-0.3.1/parSim/man/parSim.Rd | 377 ++++++++++++++++++-------- parSim-0.3.1/parSim/man/parSim_dt.Rd |only parSim-0.3.1/parSim/vignettes |only 16 files changed, 940 insertions(+), 465 deletions(-)
Title: Monte Carlo for Classical Ising Model
Description: Classical Ising Model is a land mark system in statistical physics.The model explains the physics of spin glasses and magnetic materials, and cooperative phenomenon in general, for example phase transitions and neural networks.This package provides utilities to simulate one dimensional Ising Model with Metropolis and Glauber Monte Carlo with single flip dynamics in periodic boundary conditions. Utility functions for exact solutions are provided. Such as transfer matrix for 1D. Utility functions for exact solutions are provided. Example use cases are as follows: Measuring effective ergodicity and power-laws in so called functional-diffusion. Example usage contains parallel runs, fitting power-laws, finite size scaling, computing autocorrelation, uncertainty analysis and plotting utilities.
Author: Mehmet Suzen [aut, cre]
Maintainer: Mehmet Suzen <mehmet.suzen@physics.org>
Diff between isingLenzMC versions 0.2.8 dated 2025-09-26 and 0.3.1 dated 2026-02-26
isingLenzMC-0.2.8/isingLenzMC/inst/examples/powerLawErgodicity/data_analysis.ipynb |only isingLenzMC-0.2.8/isingLenzMC/inst/examples/powerLawErgodicity/data_generate.ipynb |only isingLenzMC-0.3.1/isingLenzMC/DESCRIPTION | 10 isingLenzMC-0.3.1/isingLenzMC/MD5 | 33 +- isingLenzMC-0.3.1/isingLenzMC/NEWS | 8 isingLenzMC-0.3.1/isingLenzMC/README.md | 45 ++ isingLenzMC-0.3.1/isingLenzMC/inst/CITATION | 29 + isingLenzMC-0.3.1/isingLenzMC/inst/doc/isingLenzMC.pdf |binary isingLenzMC-0.3.1/isingLenzMC/inst/examples/powerLawErgodicity/README.md | 151 +++++----- isingLenzMC-0.3.1/isingLenzMC/inst/examples/powerLawErgodicity/notebooks |only isingLenzMC-0.3.1/isingLenzMC/inst/examples/powerLawErgodicity/src |only 11 files changed, 177 insertions(+), 99 deletions(-)
Title: Computation of the WHO 2007 References for School-Age Children
and Adolescents (5 to 19 Years)
Description: Provides WHO 2007 References for School-age Children and
Adolescents (5 to 19 years) (z-scores) with
confidence intervals and standard errors around the
prevalence estimates, taking into account complex sample designs.
More information on the methods is
available online:
<https://www.who.int/tools/growth-reference-data-for-5to19-years>.
Author: Dirk Schumacher [aut],
Elaine Borghi [ctb, cre],
Giovanna Gatica-Dominguez [ctb],
World Health Organization [cph]
Maintainer: Elaine Borghi <nfsdata@who.int>
Diff between anthroplus versions 1.0.0 dated 2024-11-11 and 1.1.0 dated 2026-02-26
DESCRIPTION | 16 ++++++++-------- MD5 | 14 +++++++------- NEWS.md | 7 +++++++ R/prevalence.R | 14 +++++++------- R/zscores.R | 8 ++++---- tests/testthat/helpers.R | 22 ++++++++++------------ tests/testthat/test-prevalence.R | 17 ++++++++++++++++- tests/testthat/test-zscores.R | 11 ++--------- 8 files changed, 61 insertions(+), 48 deletions(-)
Title: Produce Charts Following UK Government Analysis Function
Guidance
Description: Colour palettes and a 'ggplot2' theme to follow the UK Government
Analysis Function best practice guidance for producing data visualisations,
available at
<https://analysisfunction.civilservice.gov.uk/policy-store/data-visualisation-charts/>.
Includes continuous and discrete colour and fill scales, as well as a
'ggplot2' theme.
Author: Crown Copyright [cph],
Government Analysis Function [fnd],
Alice Hannah [aut],
Olivia Box Power [cre, ctb]
Maintainer: Olivia Box Power <Olivia.BoxPower@dhsc.gov.uk>
Diff between afcharts versions 0.4.1 dated 2025-01-13 and 0.5.1 dated 2026-02-26
afcharts-0.4.1/afcharts/tests/testthat/_snaps/chart-output/scale-colour-continuous-af.svg |only afcharts-0.4.1/afcharts/tests/testthat/_snaps/chart-output/scale-colour-discrete-af.svg |only afcharts-0.4.1/afcharts/tests/testthat/_snaps/chart-output/scale-fill-continuous-af.svg |only afcharts-0.4.1/afcharts/tests/testthat/_snaps/chart-output/scale-fill-discrete-af.svg |only afcharts-0.4.1/afcharts/tests/testthat/_snaps/chart-output/theme-af-non-default.svg |only afcharts-0.4.1/afcharts/tests/testthat/_snaps/chart-output/theme-af.svg |only afcharts-0.5.1/afcharts/DESCRIPTION | 18 afcharts-0.5.1/afcharts/MD5 | 134 - afcharts-0.5.1/afcharts/NAMESPACE | 1 afcharts-0.5.1/afcharts/NEWS.md | 24 afcharts-0.5.1/afcharts/R/af_palette.R | 62 afcharts-0.5.1/afcharts/R/afcharts-package.R | 1 afcharts-0.5.1/afcharts/R/colour_table.R | 2 afcharts-0.5.1/afcharts/R/data.R | 41 afcharts-0.5.1/afcharts/R/scale_colour_continuous_af.R | 12 afcharts-0.5.1/afcharts/R/scale_colour_discrete_af.R | 22 afcharts-0.5.1/afcharts/R/scale_fill_continuous_af.R | 12 afcharts-0.5.1/afcharts/R/scale_fill_discrete_af.R | 35 afcharts-0.5.1/afcharts/R/theme_af.R | 188 + afcharts-0.5.1/afcharts/R/use_afcharts.R | 256 +- afcharts-0.5.1/afcharts/README.md | 50 afcharts-0.5.1/afcharts/data/af_colour_palettes.rda |binary afcharts-0.5.1/afcharts/data/af_colour_values.rda |binary afcharts-0.5.1/afcharts/data/af_dark_blue.rda |only afcharts-0.5.1/afcharts/data/af_grey.rda |only afcharts-0.5.1/afcharts/data/af_orange.rda |only afcharts-0.5.1/afcharts/data/af_pale_grey.rda |only afcharts-0.5.1/afcharts/inst/doc/accessibility.Rmd | 2 afcharts-0.5.1/afcharts/inst/doc/accessibility.html | 4 afcharts-0.5.1/afcharts/inst/doc/colours.R | 11 afcharts-0.5.1/afcharts/inst/doc/colours.Rmd | 24 afcharts-0.5.1/afcharts/inst/doc/colours.html | 914 +------ afcharts-0.5.1/afcharts/inst/doc/cookbook.R | 829 +++++- afcharts-0.5.1/afcharts/inst/doc/cookbook.Rmd | 34 afcharts-0.5.1/afcharts/inst/doc/cookbook.html | 1226 ++++++---- afcharts-0.5.1/afcharts/inst/doc/saving.Rmd | 2 afcharts-0.5.1/afcharts/inst/doc/saving.html | 5 afcharts-0.5.1/afcharts/man/af_colour_palettes.Rd | 5 afcharts-0.5.1/afcharts/man/af_colours.Rd |only afcharts-0.5.1/afcharts/man/figures/README-ex1-1.svg | 1126 ++++----- afcharts-0.5.1/afcharts/man/figures/README-ex2-1.svg | 914 +++---- afcharts-0.5.1/afcharts/man/figures/README-ex3-1.svg | 824 +++--- afcharts-0.5.1/afcharts/man/figures/README-unnamed-chunk-2-1.svg |only afcharts-0.5.1/afcharts/man/figures/README-unnamed-chunk-3-1.svg |only afcharts-0.5.1/afcharts/man/figures/README-unnamed-chunk-4-1.svg |only afcharts-0.5.1/afcharts/man/scale_colour_continuous_af.Rd | 9 afcharts-0.5.1/afcharts/man/scale_colour_discrete_af.Rd | 19 afcharts-0.5.1/afcharts/man/scale_fill_continuous_af.Rd | 9 afcharts-0.5.1/afcharts/man/scale_fill_discrete_af.Rd | 31 afcharts-0.5.1/afcharts/man/theme_af.Rd | 29 afcharts-0.5.1/afcharts/man/use_afcharts.Rd | 9 afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/scale-colour-continuous-af1.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/scale-colour-continuous-af2.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/scale-colour-discrete-af1.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/scale-colour-discrete-af2.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/scale-fill-continuous-af1.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/scale-fill-continuous-af2.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/scale-fill-discrete-af1.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/scale-fill-discrete-af2.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/theme-af-non-default1.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/theme-af-non-default2.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/theme-af-non-default3.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/theme-af-non-default4.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/theme-af-non-default5.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/theme-af-non-default6.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/theme-af-non-default7.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/theme-af-non-default8.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/theme-af-non-default9.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/theme-af1.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/use-afcharts-1.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/use-afcharts-2.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/use-afcharts-3.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/use-afcharts-4.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/use-afcharts-5.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/use-afcharts-6.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/use-afcharts-theme-af1.svg |only afcharts-0.5.1/afcharts/tests/testthat/_snaps/chart-output/use-afcharts-theme-af2.svg |only afcharts-0.5.1/afcharts/tests/testthat/test-af_palette.R | 51 afcharts-0.5.1/afcharts/tests/testthat/test-chart-output.R | 338 ++ afcharts-0.5.1/afcharts/vignettes/accessibility.Rmd | 2 afcharts-0.5.1/afcharts/vignettes/colours.Rmd | 24 afcharts-0.5.1/afcharts/vignettes/cookbook.Rmd | 34 afcharts-0.5.1/afcharts/vignettes/cookbook/_acknowledgments.Rmd | 2 afcharts-0.5.1/afcharts/vignettes/cookbook/_annotations.Rmd | 67 afcharts-0.5.1/afcharts/vignettes/cookbook/_chart-types.Rmd | 230 + afcharts-0.5.1/afcharts/vignettes/cookbook/_colour-palettes.Rmd | 77 afcharts-0.5.1/afcharts/vignettes/cookbook/_customisations.Rmd | 265 +- afcharts-0.5.1/afcharts/vignettes/saving.Rmd | 2 88 files changed, 4583 insertions(+), 3393 deletions(-)
Title: Parallel Low-Rank Approximation with Nonnegativity Constraints
Description: 'Rcpp' bindings for 'PLANC', a highly parallel
and extensible NMF/NTF (Non-negative Matrix/Tensor Factorization) library.
Wraps algorithms described in
Kannan et. al (2018) <doi:10.1109/TKDE.2017.2767592> and
Eswar et. al (2021) <doi:10.1145/3432185>.
Implements algorithms described in
Welch et al. (2019) <doi:10.1016/j.cell.2019.05.006>,
Gao et al. (2021) <doi:10.1038/s41587-021-00867-x>, and
Kriebel & Welch (2022) <doi:10.1038/s41467-022-28431-4>.
Author: Andrew Robbins [aut, cre] ,
Yichen Wang [aut],
Joshua Welch [cph] ,
Ramakrishnan Kannan [cph] ,
Conrad Sanderson [cph] ,
Blue Brain Project/EPFL [cph] ,
UT-Batelle [cph]
Maintainer: Andrew Robbins <robbiand@umich.edu>
Diff between RcppPlanc versions 2.0.14 dated 2026-02-24 and 2.0.15 dated 2026-02-26
DESCRIPTION | 8 +++--- MD5 | 8 +++--- NEWS.md | 3 ++ inst/doc/RcppPlanc.html | 10 ++++---- tools/patches/00_remove_stdio.patch | 44 ++++++++++++++++++++++++++++++++++++ 5 files changed, 60 insertions(+), 13 deletions(-)
Title: Control of the Median of the FDP
Description: Methods for controlling the median of the false discovery proportion (mFDP).
Depending on the method, simultaneous or non-simultaneous inference is provided.
The methods take a vector of p-values or test statistics as input.
Author: Jesse Hemerik [aut, cre]
Maintainer: Jesse Hemerik <hemerik@ese.eur.nl>
Diff between mFDP versions 0.2.1 dated 2025-01-22 and 0.2.2 dated 2026-02-26
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- R/mFDP.direc.R | 11 ++++++----- 3 files changed, 14 insertions(+), 13 deletions(-)
Title: Classifications for Statistics Norway
Description: Functions to search, retrieve, apply and update classification
standards and code lists using Statistics Norway's API
<https://www.ssb.no/klass> from the system 'KLASS'. Retrieves classifications
by date with options to choose language, hierarchical level and formatting.
Author: Susie Jentoft [aut, cre],
Diana-Cristina Iancu [aut],
Lisa Li [aut],
Oeyvind I. Berntsen [aut],
Statistics Norway [cph]
Maintainer: Susie Jentoft <susie.jentoft@ssb.no>
Diff between klassR versions 1.0.4 dated 2025-12-12 and 1.0.5 dated 2026-02-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 3 +++ R/Klass_list.R | 6 ++++-- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: Estimating Water Retention and Infiltration Model Parameters
using Experimental Data
Description: Estimates the parameters of infiltration and water retention models using the curve-fitting methods as shown in Omuto and Gumbe (2009) <doi:10.1016/j.cageo.2008.08.011>. The models considered are those that are commonly used in soil science. Version 2 of the package has new models for water retention characteristic curves.
Author: Christian Thine Omuto [aut, cre]
Maintainer: Christian Thine Omuto <thineomuto@yahoo.com>
This is a re-admission after prior archival of version 2.1.1 dated 2024-05-17
Diff between HydroMe versions 2.1.1 dated 2024-05-17 and 2.1.2 dated 2026-02-26
DESCRIPTION | 22 ++++++++++++---------- MD5 | 40 ++++++++++++++++++++-------------------- NAMESPACE | 2 +- R/Brook.R | 3 +-- man/Brook.Rd | 4 ++-- man/Campbel.Rd | 2 +- man/Expo.Rd | 2 +- man/MB.Rd | 2 +- man/Ruso.Rd | 2 +- man/SSfredlund.Rd | 5 ++--- man/SSgampt.Rd | 2 +- man/SSgard.Rd | 4 ++-- man/SSgardner.Rd | 2 +- man/SShorton.Rd | 2 +- man/SSkosugi.Rd | 5 ++--- man/SSomuto.Rd | 2 +- man/SSphilip.Rd | 2 +- man/SSvgm.Rd | 5 ++--- man/SSvgm4.Rd | 7 +++---- man/Tani.Rd | 2 +- man/isric.Rd | 5 ++++- 21 files changed, 61 insertions(+), 61 deletions(-)
Title: Tabular Data Suppression using Gaussian Elimination
Description: A statistical disclosure control tool to protect tables by suppression
using the Gaussian elimination secondary suppression algorithm
(Langsrud, 2024) <doi:10.1007/978-3-031-69651-0_6>. A suggestion is
to start by working with functions SuppressSmallCounts() and
SuppressDominantCells(). These functions use primary suppression functions for
the minimum frequency rule and the dominance rule, respectively. Novel
functionality for suppression of disclosive cells is also included. General
primary suppression functions can be supplied as input to the general working
horse function, GaussSuppressionFromData(). Suppressed frequencies can be
replaced by synthetic decimal numbers as described in
Langsrud (2019) <doi:10.1007/s11222-018-9848-9>.
Author: Oeyvind Langsrud [aut, cre] ,
Daniel Lupp [aut] ,
Hege Boevelstad [ctb] ,
Vidar Norstein Klungre [rev] ,
Jonas Lindblad [ctb],
Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between GaussSuppression versions 1.2.3 dated 2025-12-11 and 1.3.0 dated 2026-02-26
DESCRIPTION | 8 MD5 | 20 NAMESPACE | 1 NEWS.md | 24 R/GaussSuppressionFromData.R | 2 R/PackageSpecs.R | 4 R/SuppressKDisclosure.R | 1002 ++++++++++++++++++++++++++++-- man/KDisclosurePrimary.Rd | 64 + man/PackageSpecs.Rd | 2 man/SuppressKDisclosure.Rd | 216 ++++++ man/default_targeting.Rd |only tests/testthat/test-SuppressKDisclosure.R |only 12 files changed, 1255 insertions(+), 88 deletions(-)
More information about GaussSuppression at CRAN
Permanent link
Title: The Ultimate Helper for Clumsy Fingers
Description: Automatically suggests a correction when a typo occurs.
Author: Vincent Guyader [cre, aut] ,
ThinkR [cph]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between fcuk versions 0.1.21 dated 2017-07-08 and 0.2.0 dated 2026-02-26
fcuk-0.1.21/fcuk/man/get_all_objets_from_r.Rd |only fcuk-0.2.0/fcuk/DESCRIPTION | 36 fcuk-0.2.0/fcuk/MD5 | 59 - fcuk-0.2.0/fcuk/NAMESPACE | 15 fcuk-0.2.0/fcuk/R/add_to_rprofile.R | 38 fcuk-0.2.0/fcuk/R/check_mark.R |only fcuk-0.2.0/fcuk/R/doc_package.R | 17 fcuk-0.2.0/fcuk/R/fcuk-package.R |only fcuk-0.2.0/fcuk/R/function.R | 248 +++-- fcuk-0.2.0/fcuk/R/regex_rules.R |only fcuk-0.2.0/fcuk/R/rerun.R |only fcuk-0.2.0/fcuk/R/zzz.R | 21 fcuk-0.2.0/fcuk/README.md | 43 fcuk-0.2.0/fcuk/build/vignette.rds |binary fcuk-0.2.0/fcuk/inst/doc/fcuk.R | 42 fcuk-0.2.0/fcuk/inst/doc/fcuk.Rmd | 4 fcuk-0.2.0/fcuk/inst/doc/fcuk.html | 432 ++++++++-- fcuk-0.2.0/fcuk/man/add_fcuk_to_rprofile.Rd | 39 fcuk-0.2.0/fcuk/man/catch_error.Rd | 44 - fcuk-0.2.0/fcuk/man/dot-.Rd |only fcuk-0.2.0/fcuk/man/error_analysis.Rd | 46 - fcuk-0.2.0/fcuk/man/error_correction_propostion.Rd | 51 - fcuk-0.2.0/fcuk/man/fcuk-package.Rd | 84 + fcuk-0.2.0/fcuk/man/get_all_objects_from_r.Rd |only fcuk-0.2.0/fcuk/man/get_last.Rd |only fcuk-0.2.0/fcuk/man/init_error_tracker.Rd | 37 fcuk-0.2.0/fcuk/man/plus-.fcuk.Rd |only fcuk-0.2.0/fcuk/man/remove_error_tracker.Rd | 35 fcuk-0.2.0/fcuk/tests/testthat.R | 8 fcuk-0.2.0/fcuk/tests/testthat/test-catch_error.R | 39 fcuk-0.2.0/fcuk/tests/testthat/test-erreur_correction_propostion.R | 28 fcuk-0.2.0/fcuk/tests/testthat/test-error_analysis.R | 18 fcuk-0.2.0/fcuk/tests/testthat/test-get_all_objets_from_r.R | 34 fcuk-0.2.0/fcuk/tests/testthat/test-regex.R | 45 - fcuk-0.2.0/fcuk/vignettes/fcuk.Rmd | 4 35 files changed, 1023 insertions(+), 444 deletions(-)
Title: Validate Data Frames
Description: Functions for validating the structure and properties of data frames. Answers essential questions about a data set after initial import or modification. What are the unique or missing values? What columns form a primary key? What are the properties of the numeric or categorical columns? What kind of overlap or mapping exists between 2 columns?
Author: Harrison Tietze [aut, cre]
Maintainer: Harrison Tietze <Harrison4192@gmail.com>
Diff between validata versions 0.1.0 dated 2021-10-05 and 0.1.1 dated 2026-02-26
validata-0.1.0/validata/inst/doc/PackageIntroduction.R |only validata-0.1.0/validata/inst/doc/PackageIntroduction.Rmd |only validata-0.1.0/validata/inst/doc/PackageIntroduction.html |only validata-0.1.0/validata/man/make_distincts.Rd |only validata-0.1.0/validata/man/names_list.Rd |only validata-0.1.0/validata/vignettes/PackageIntroduction.Rmd |only validata-0.1.1/validata/DESCRIPTION | 12 +- validata-0.1.1/validata/LICENSE | 2 validata-0.1.1/validata/MD5 | 44 ++++--- validata-0.1.1/validata/NAMESPACE | 3 validata-0.1.1/validata/NEWS.md | 2 validata-0.1.1/validata/R/confirm_distinct.R | 3 validata-0.1.1/validata/R/confirm_overlap.R | 4 validata-0.1.1/validata/R/determine_distinct.R | 4 validata-0.1.1/validata/R/diagnose.R | 79 +++++++------- validata-0.1.1/validata/R/mode.R |only validata-0.1.1/validata/build/vignette.rds |binary validata-0.1.1/validata/inst/doc/validata.R |only validata-0.1.1/validata/inst/doc/validata.Rmd |only validata-0.1.1/validata/inst/doc/validata.html |only validata-0.1.1/validata/man/diagnose.Rd | 9 + validata-0.1.1/validata/man/diagnose_category.Rd | 4 validata-0.1.1/validata/man/diagnose_missing.Rd | 5 validata-0.1.1/validata/man/diagnose_numeric.Rd | 10 - validata-0.1.1/validata/man/mode_fn.Rd |only validata-0.1.1/validata/man/mode_pct.Rd |only validata-0.1.1/validata/man/n_dupes.Rd | 1 validata-0.1.1/validata/man/top_n_vals.Rd |only validata-0.1.1/validata/man/view_missing.Rd | 5 validata-0.1.1/validata/vignettes/validata.Rmd |only 30 files changed, 96 insertions(+), 91 deletions(-)
Title: Create Non-Confidential Multi-Resolution Grids
Description: The need for anonymization of individual survey responses often leads to many suppressed grid cells in a regular grid. Here we provide functionality for creating multi-resolution gridded data, respecting the confidentiality rules, such as a minimum number of units and dominance by one or more units for each grid cell. The functions also include the possibility for contextual suppression of data. For more details see Skoien et al. (2025) <doi:10.48550/arXiv.2410.17601>.
Author: Jon Olav Skoien [aut, cre],
Nicolas Lampach [aut]
Maintainer: Jon Olav Skoien <jon.skoien@gmail.com>
Diff between MRG versions 0.3.23 dated 2026-01-07 and 0.3.25 dated 2026-02-26
DESCRIPTION | 6 +- MD5 | 18 +++--- R/MRGmerge.R | 120 +++++++++++++++++++++++++++++++++++++------ R/MRGoverlap.R | 2 R/MRGpostProcess.R | 2 R/multiResGrid.R | 2 R/roxygen_eval.R | 6 ++ man/MRGmerge.Rd | 35 ++++++++++-- tests/multiResGrid.R | 16 ++--- tests/multiResGrid.Rout.save | 60 ++++++++++----------- 10 files changed, 195 insertions(+), 72 deletions(-)
Title: R Bindings for 'Automerge' 'CRDT' Library
Description: Provides R bindings to the 'Automerge' Conflict-free
Replicated Data Type ('CRDT') library. 'Automerge' enables automatic
merging of concurrent changes without conflicts, making it ideal for
distributed systems, collaborative applications, and offline-first
architectures. The approach of local-first software was proposed in
Kleppmann, M., Wiggins, A., van Hardenberg, P., McGranaghan, M. (2019)
<doi:10.1145/3359591.3359737>. This package supports all 'Automerge'
data types (maps, lists, text, counters) and provides both low-level
and high-level synchronization protocols for seamless interoperability
with 'JavaScript' and other 'Automerge' implementations.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Authors of the dependency Rust crates [cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between automerge versions 0.3.1 dated 2026-02-19 and 0.4.0 dated 2026-02-26
DESCRIPTION | 6 MD5 | 56 +++--- NEWS.md | 11 + R/objects.R | 23 +- inst/doc/automerge.R | 7 inst/doc/automerge.Rmd | 7 inst/doc/automerge.html | 39 ++-- inst/doc/crdt-concepts.html | 20 +- inst/doc/quick-reference.R | 3 inst/doc/quick-reference.Rmd | 3 inst/doc/quick-reference.html | 45 ++--- inst/doc/sync-protocol.html | 10 - man/am_text_content.Rd | 5 man/am_text_update.Rd | 16 - src/automerge.h | 6 src/automerge/rust/automerge/src/patches/patch_log.rs | 68 +------- src/cursors.c | 48 +---- src/document.c | 87 ++++------ src/init.c | 4 src/objects.c | 50 +++-- src/sync.c | 16 - tests/testthat/test-cursors.R | 34 +--- tests/testthat/test-document.R | 11 - tests/testthat/test-marks.R | 8 tests/testthat/test-objects.R | 151 ++++++++++-------- tests/testthat/test-sync.R | 38 ++-- tools/patch-sources.sh | 80 +++++++++ vignettes/automerge.Rmd | 7 vignettes/quick-reference.Rmd | 3 29 files changed, 440 insertions(+), 422 deletions(-)
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 3.0.15 dated 2026-02-26 and 3.0.16 dated 2026-02-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++-- inst/CITATION | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Plotting Trade-Off AUC-Dimensionality
Description: Perform and Runtime statistical comparisons between models.
This package aims at choosing the best model for a particular dataset,
regarding its discriminant power and runtime.
Author: Garcez Luis [aut, cre]
Maintainer: Garcez Luis <luisgarcez1@gmail.com>
This is a re-admission after prior archival of version 0.1.0 dated 2025-05-02
Diff between tradeoffaucdim versions 0.1.0 dated 2025-05-02 and 0.2.0 dated 2026-02-26
tradeoffaucdim-0.1.0/tradeoffaucdim/tests/spelling.R |only tradeoffaucdim-0.2.0/tradeoffaucdim/DESCRIPTION | 6 - tradeoffaucdim-0.2.0/tradeoffaucdim/MD5 | 11 +- tradeoffaucdim-0.2.0/tradeoffaucdim/R/06_compare_test.R | 47 ++++++---- tradeoffaucdim-0.2.0/tradeoffaucdim/tests/testthat/test-01_bootstrap_data.R | 6 - tradeoffaucdim-0.2.0/tradeoffaucdim/tests/testthat/test-05-plot_curve.R | 4 tradeoffaucdim-0.2.0/tradeoffaucdim/tests/testthat/test-06-compare_test.R | 8 - 7 files changed, 45 insertions(+), 37 deletions(-)
More information about tradeoffaucdim at CRAN
Permanent link
Title: A Glimpse at the Diversity of Peru's Endemic Plants
Description: Introducing a novel and updated database showcasing Peru's endemic plants. This meticulously compiled and revised botanical collection encompasses a remarkable assemblage of over 7,898 distinct species. The data for this resource was sourced from the work of Govaerts, R., Nic Lughadha, E., Black, N. et al., titled 'The World Checklist of Vascular Plants: A continuously updated resource for exploring global plant diversity', published in Sci Data 8, 215 (2021) <doi:10.1038/s41597-021-00997-6>.
Author: Paul E. Santos Andrade [aut, cre] ,
Lucely L. Vilca Bustamante [aut]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
This is a re-admission after prior archival of version 0.2.0 dated 2026-01-12
Diff between ppendemic versions 0.2.0 dated 2026-01-12 and 0.2.1 dated 2026-02-26
DESCRIPTION | 6 - MD5 | 29 +++-- R/fuzzy_match_genus.R | 86 ++++++++++------- R/fuzzy_match_infraspp_within_species.R | 18 ++- R/fuzzy_match_spp_within_genus.R | 18 ++- R/internal.R | 3 R/is_ppendemic.R | 17 ++- R/matching_ppendemic.R | 42 ++++++-- man/fuzzy_match_genus.Rd | 16 ++- man/fuzzy_match_infraspecies_within_species.Rd | 4 man/fuzzy_match_species_within_genus_helper.Rd | 4 man/is_ppendemic.Rd | 16 ++- man/matching_ppendemic.Rd | 21 +++- tests/testthat/test_fuzzy_match_genus_ambiguity.R |only tests/testthat/test_is_ppendemic.R |only tests/testthat/test_matching_ppendemic.R | 75 +++++++++++++- tests/testthat/test_matching_ppendemic_normalization.R |only 17 files changed, 276 insertions(+), 79 deletions(-)
Title: Geostatistical Modelling with Likelihood and Bayes
Description: Geostatistical modelling facilities using 'SpatRaster' and 'SpatVector'
objects are provided. Non-Gaussian models are fit using 'INLA', and Gaussian
geostatistical models use Maximum Likelihood Estimation. For details see Brown (2015) <doi:10.18637/jss.v063.i12>. The 'RandomFields' package is available at <https://www.wim.uni-mannheim.de/schlather/publications/software>.
Author: Patrick Brown [aut, cre, cph]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between geostatsp versions 2.0.8 dated 2025-02-06 and 2.0.10 dated 2026-02-26
DESCRIPTION | 8 MD5 | 35 - R/RFsimulate.R | 17 R/krige.R | 1185 ++++++++++++++++++++++++++-------------------------- R/lgm.R | 176 +++---- R/onload.R |only build/stage23.rdb |binary build/vignette.rds |binary inst/doc/glgm.pdf |binary inst/doc/lgcp.pdf |binary man/matern.Rd | 5 man/murder.Rd | 2 man/simLgcp.Rd | 2 src/Makevars | 3 src/gmrfLik.c | 7 src/matern.c | 96 +++- src/maternLogL.c | 21 src/maternLogLopt.c | 22 tests/RFsimulate.R | 21 19 files changed, 851 insertions(+), 749 deletions(-)
Title: Search Download and Handle Data from Copernicus Marine Service
Information
Description: Subset and download data from EU Copernicus Marine
Service Information: <https://data.marine.copernicus.eu>.
Import data on the oceans physical and biogeochemical state
from Copernicus into R without the need of external software.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
This is a re-admission after prior archival of version 0.4.0 dated 2026-02-12
Diff between CopernicusMarine versions 0.4.0 dated 2026-02-12 and 0.4.4 dated 2026-02-26
DESCRIPTION | 27 +-- MD5 | 53 +++--- NEWS.md | 12 + R/CopernicusMarine-package.r | 2 R/cms_download_native.R | 19 +- R/cms_download_subset.r | 44 +++-- R/cms_login.r | 244 +++++++++++++++--------------- R/cms_product_details.r | 68 ++++---- R/cms_product_metadata.r | 62 +++---- R/generics.r | 190 ++++++++++++++--------- R/init.R |only README.md | 4 build/vignette.rds |binary inst/doc/blosc.R |only inst/doc/blosc.Rmd |only inst/doc/blosc.html |only inst/doc/proxy.R |only inst/doc/proxy.Rmd |only inst/doc/proxy.html |only inst/doc/translate.R | 9 - inst/doc/translate.Rmd | 151 +++++++++--------- inst/doc/translate.html | 317 +++++++-------------------------------- man/cms_download_native.Rd | 10 + man/cms_download_subset.Rd | 23 +- man/cms_native_proxy.Rd | 22 ++ man/cms_zarr_proxy.Rd | 23 ++ man/figures/README-leaflet-1.png |binary tests/testthat/test_dev.r | 19 ++ tests/testthat/test_login.r | 17 ++ vignettes/blosc.Rmd |only vignettes/proxy.Rmd |only vignettes/translate.Rmd | 151 +++++++++--------- 32 files changed, 739 insertions(+), 728 deletions(-)
More information about CopernicusMarine at CRAN
Permanent link
Title: Case Based Reasoning
Description: Case-based reasoning is a problem-solving methodology that involves solving a new problem by referring to the solution of a similar problem in a large set of previously solved problems. The key aspect of Case Based Reasoning is to determine the problem that "most closely" matches the new problem at hand. This is achieved by defining a family of distance functions and using these distance functions as parameters for local averaging regression estimates of the final result. The optimal distance function is chosen based on a specific error measure used in regression estimation. This approach allows for efficient problem-solving by leveraging past experiences and adapting solutions from similar cases. The underlying concept is inspired by the work of Dippon J. et al. (2002) <doi:10.1016/S0167-9473(02)00058-0>.
Author: Simon Mueller [aut, cre],
PD Dr. Juergen Dippon [ctb]
Maintainer: Simon Mueller <simon.mueller@muon-stat.com>
This is a re-admission after prior archival of version 0.3 dated 2023-05-02
Diff between CaseBasedReasoning versions 0.3 dated 2023-05-02 and 0.4 dated 2026-02-26
CaseBasedReasoning-0.3/CaseBasedReasoning/man/CaseBasedReasoning.Rd |only CaseBasedReasoning-0.3/CaseBasedReasoning/man/asDistObject.Rd |only CaseBasedReasoning-0.3/CaseBasedReasoning/man/call_function.Rd |only CaseBasedReasoning-0.3/CaseBasedReasoning/man/distanceRandomForest.Rd |only CaseBasedReasoning-0.3/CaseBasedReasoning/man/terminalNodes.Rd |only CaseBasedReasoning-0.3/CaseBasedReasoning/man/weightedDistance.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/DESCRIPTION | 21 - CaseBasedReasoning-0.4/CaseBasedReasoning/MD5 | 96 ++--- CaseBasedReasoning-0.4/CaseBasedReasoning/NAMESPACE | 31 + CaseBasedReasoning-0.4/CaseBasedReasoning/R/CBRBase.R | 187 ++++++---- CaseBasedReasoning-0.4/CaseBasedReasoning/R/RFModel.R | 83 ++-- CaseBasedReasoning-0.4/CaseBasedReasoning/R/RegressionModel.R | 148 ++++--- CaseBasedReasoning-0.4/CaseBasedReasoning/R/casebasedreasoning.R | 16 CaseBasedReasoning-0.4/CaseBasedReasoning/R/compat.R |only CaseBasedReasoning-0.4/CaseBasedReasoning/R/distance.R | 118 ++---- CaseBasedReasoning-0.4/CaseBasedReasoning/R/generate_grid.R | 36 - CaseBasedReasoning-0.4/CaseBasedReasoning/R/generics.R |only CaseBasedReasoning-0.4/CaseBasedReasoning/R/pkgsExports.R | 2 CaseBasedReasoning-0.4/CaseBasedReasoning/R/utils.R | 60 +-- CaseBasedReasoning-0.4/CaseBasedReasoning/R/validation.R |only CaseBasedReasoning-0.4/CaseBasedReasoning/README.md | 74 ++- CaseBasedReasoning-0.4/CaseBasedReasoning/build/partial.rdb |only CaseBasedReasoning-0.4/CaseBasedReasoning/build/vignette.rds |binary CaseBasedReasoning-0.4/CaseBasedReasoning/inst/doc/distance_measures.html | 16 CaseBasedReasoning-0.4/CaseBasedReasoning/inst/doc/distance_measures.rmd | 2 CaseBasedReasoning-0.4/CaseBasedReasoning/inst/doc/get_started.html | 142 +++---- CaseBasedReasoning-0.4/CaseBasedReasoning/inst/doc/get_started.rmd | 12 CaseBasedReasoning-0.4/CaseBasedReasoning/man/CBRBase.Rd | 32 - CaseBasedReasoning-0.4/CaseBasedReasoning/man/CaseBasedReasoning-package.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/CoxModel.Rd | 10 CaseBasedReasoning-0.4/CaseBasedReasoning/man/RFModel.Rd | 15 CaseBasedReasoning-0.4/CaseBasedReasoning/man/RegressionModel.Rd | 18 CaseBasedReasoning-0.4/CaseBasedReasoning/man/as_dist_object.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/depth_distance.Rd | 4 CaseBasedReasoning-0.4/CaseBasedReasoning/man/distance_random_forest.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/edges_between_terminal_nodes.Rd | 2 CaseBasedReasoning-0.4/CaseBasedReasoning/man/generate_grid.Rd | 8 CaseBasedReasoning-0.4/CaseBasedReasoning/man/predict.CoxModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/predict.LinearModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/predict.LogisticModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/predict.RFModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/print.CoxModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/print.LinearModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/print.LogisticModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/print.RFModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/proximity_distance.Rd | 2 CaseBasedReasoning-0.4/CaseBasedReasoning/man/ranger_forests_to_matrix.Rd | 2 CaseBasedReasoning-0.4/CaseBasedReasoning/man/summary.CoxModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/summary.LinearModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/summary.LogisticModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/summary.RFModel.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/terminal_nodes.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/man/weighted_distance.Rd |only CaseBasedReasoning-0.4/CaseBasedReasoning/src/Makevars | 1 CaseBasedReasoning-0.4/CaseBasedReasoning/src/Makevars.win | 1 CaseBasedReasoning-0.4/CaseBasedReasoning/src/order.cpp | 5 CaseBasedReasoning-0.4/CaseBasedReasoning/src/parallelFrameworks.h | 26 - CaseBasedReasoning-0.4/CaseBasedReasoning/tests/testthat.R |only CaseBasedReasoning-0.4/CaseBasedReasoning/tests/testthat/test-CPPOrder.R | 18 CaseBasedReasoning-0.4/CaseBasedReasoning/tests/testthat/test-RFDistance.R | 60 +-- CaseBasedReasoning-0.4/CaseBasedReasoning/tests/testthat/test-SimilarCases.R | 182 +++++++-- CaseBasedReasoning-0.4/CaseBasedReasoning/vignettes/distance_measures.rmd | 2 CaseBasedReasoning-0.4/CaseBasedReasoning/vignettes/get_started.rmd | 12 63 files changed, 787 insertions(+), 657 deletions(-)
More information about CaseBasedReasoning at CRAN
Permanent link
Title: Asymptotic Classification Theory for Cognitive Diagnosis
Description: Cluster analysis for cognitive diagnosis based on the Asymptotic Classification Theory (Chiu, Douglas & Li, 2009; <doi:10.1007/s11336-009-9125-0>). Given the sample statistic of sum-scores, cluster analysis techniques can be used to classify examinees into latent classes based on their attribute patterns. In addition to the algorithms used to classify data, three labeling approaches are proposed to label clusters so that examinees' attribute profiles can be obtained.
Author: Chia-Yi Chiu [aut] ,
Wenchao Ma [aut, cre]
Maintainer: Wenchao Ma <wma@umn.edu>
Diff between ACTCD versions 1.3-0 dated 2023-11-09 and 1.4-0 dated 2026-02-26
DESCRIPTION | 27 ++++++++++++++++++--------- MD5 | 2 +- 2 files changed, 19 insertions(+), 10 deletions(-)
Title: Analyse Citation Data from Google Scholar
Description: Provides functions to extract citation data from Google
Scholar. Convenience functions are also provided for comparing
multiple scholars and predicting future h-index values.
Author: Guangchuang Yu [aut, cre] ,
James Keirstead [aut],
Gregory Jefferis [aut] ,
Gordon Getzinger [ctb],
Jorge Cimentada [ctb],
Max Czapanskiy [ctb],
Dominique Makowski [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between scholar versions 0.2.5 dated 2025-06-26 and 0.2.6 dated 2026-02-26
DESCRIPTION | 8 +- MD5 | 28 ++++---- NEWS.md | 9 ++ R/compare.r | 22 +++--- R/publications.r | 2 R/scholar.r | 89 ++++++++++++++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/scholar.R | 2 inst/doc/scholar.Rmd | 4 - inst/doc/scholar.html | 136 +++++++++++++++++++++-------------------- man/compare_scholar_careers.Rd | 2 man/compare_scholars.Rd | 2 man/get_profile.Rd | 2 vignettes/scholar.Rmd | 4 - 15 files changed, 181 insertions(+), 129 deletions(-)
Title: Multivariate Outlier Detection Based on Robust Methods
Description: Various methods for multivariate outlier detection: arw, a Mahalanobis-type method with an adaptive outlier cutoff value; locout, a method incorporating local neighborhood; pcout, a method for high-dimensional data; mvoutlier.CoDa, a method for compositional data. References are provided in the corresponding help files.
Author: Peter Filzmoser [aut, cre]
Maintainer: Peter Filzmoser <P.Filzmoser@tuwien.ac.at>
Diff between mvoutlier versions 2.1.1 dated 2021-07-30 and 2.1.4 dated 2026-02-26
DESCRIPTION | 14 +++++++------- MD5 | 4 ++-- man/pkb.Rd | 2 +- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Running Local LLMs with 'llama.cpp' Backend
Description: Provides R bindings to the 'llama.cpp' library for running large language models.
The package uses a lightweight architecture where the C++ backend library is downloaded
at runtime rather than bundled with the package.
Package features include text generation, reproducible generation, and parallel inference.
Author: Eddie Yang [aut] ,
Yaosheng Xu [aut, cre]
Maintainer: Yaosheng Xu <xu2009@purdue.edu>
Diff between localLLM versions 1.2.0 dated 2026-02-17 and 1.2.1 dated 2026-02-26
DESCRIPTION | 8 +- MD5 | 56 ++++++++++---------- NEWS.md | 10 +++ R/capacity.R | 42 +++++++++------ R/install.R | 6 +- R/quick_llama.R | 20 ++----- inst/doc/get-started.R | 9 +-- inst/doc/get-started.Rmd | 15 ++--- inst/doc/get-started.html | 21 +++---- inst/doc/reproducible-output.Rmd | 79 +++++++++++++++++------------ inst/doc/reproducible-output.html | 73 ++++++++++++++++---------- inst/doc/tutorial-basic-generation.R | 2 inst/doc/tutorial-basic-generation.Rmd | 10 +-- inst/doc/tutorial-basic-generation.html | 10 +-- inst/doc/tutorial-ollama-integration.R | 4 - inst/doc/tutorial-ollama-integration.Rmd | 12 ++-- inst/doc/tutorial-ollama-integration.html | 12 ++-- inst/doc/tutorial-parallel-processing.R | 4 - inst/doc/tutorial-parallel-processing.Rmd | 4 - inst/doc/tutorial-parallel-processing.html | 4 - man/hardware_profile.Rd | 4 - man/quick_llama.Rd | 11 +--- tests/testthat/helper-ci.R | 7 +- tests/testthat/test-basic.R | 5 - vignettes/get-started.Rmd | 15 ++--- vignettes/reproducible-output.Rmd | 79 +++++++++++++++++------------ vignettes/tutorial-basic-generation.Rmd | 10 +-- vignettes/tutorial-ollama-integration.Rmd | 12 ++-- vignettes/tutorial-parallel-processing.Rmd | 4 - 29 files changed, 301 insertions(+), 247 deletions(-)
Title: Generating Time Series with Diverse and Controllable
Characteristics
Description: Generates synthetic time series based on various univariate
time series models including MAR and ARIMA processes. Kang, Y.,
Hyndman, R.J., Li, F.(2020) <doi:10.1002/sam.11461>.
Author: Yanfei Kang [aut] ,
Feng Li [aut, cre] ,
Rob Hyndman [aut] ,
Mitchell O'Hara-Wild [ctb] ,
Bocong Zhao [ctb]
Maintainer: Feng Li <feng.li@gsm.pku.edu.cn>
Diff between gratis versions 1.0.7 dated 2024-04-10 and 1.0.8 dated 2026-02-26
DESCRIPTION | 21 +++--- MD5 | 28 ++++----- NEWS.md | 5 + R/simulate_target.R | 7 +- README.md | 44 +++++++------- build/vignette.rds |binary inst/doc/QuickStart.R | 6 - inst/doc/QuickStart.Rmd | 6 - inst/doc/QuickStart.html | 94 ++++++++++++++++--------------- man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/gratis-package.Rd | 2 man/simulate_target.Rd | 7 +- vignettes/QuickStart.Rmd | 6 - 15 files changed, 120 insertions(+), 106 deletions(-)
Title: The Directed Prediction Index for Causal Direction Inference
from Observational Data
Description: The Directed Prediction Index ('DPI') is a causal discovery method
for observational data designed to quantify the relative endogeneity
of outcome (Y) versus predictor (X) variables in regression models.
By comparing the coefficients of determination (R-squared)
between the Y-as-outcome and X-as-outcome models
while controlling for sufficient confounders and
simulating k random covariates, it can quantify relative endogeneity,
providing a necessary but insufficient condition for causal direction
from a less endogenous variable (X) to a more endogenous variable (Y).
Methodological details are provided at
<https://psychbruce.github.io/DPI/>.
This package also includes functions for data simulation and network
analysis (correlation, partial correlation, and Bayesian Networks).
Author: Han Wu Shuang Bao [aut, cre]
Maintainer: Han Wu Shuang Bao <baohws@foxmail.com>
Diff between DPI versions 2025.11 dated 2025-11-24 and 2026.2 dated 2026-02-26
DESCRIPTION | 24 ++++++++++++------------ MD5 | 18 +++++++++--------- NAMESPACE | 1 + NEWS.md | 9 +++++++++ R/DPI.R | 41 ++++++++++++++++++++++++++--------------- README.md | 22 +++++++++++----------- man/DPI-package.Rd | 2 +- man/DPI.Rd | 16 ++++++---------- man/DPI_curve.Rd | 10 +++------- man/DPI_dag.Rd | 13 ++++++------- 10 files changed, 84 insertions(+), 72 deletions(-)
Title: Distribution of the 'BayesX' C++ Sources
Description: 'BayesX' performs Bayesian inference in structured additive regression (STAR) models.
The R package BayesXsrc provides the 'BayesX' command line tool for easy installation.
A convenient R interface is provided in package R2BayesX.
Author: Nikolaus Umlauf [aut, cre] ,
Daniel Adler [aut],
Thomas Kneib [aut] ,
Stefan Lang [aut],
Achim Zeileis [aut]
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Diff between BayesXsrc versions 3.0-7 dated 2026-01-10 and 3.0-7.1 dated 2026-02-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/bayesxsrc/bib/realobs.h | 2 +- src/bayesxsrc/bib/tarray2d.cpp | 2 +- src/bayesxsrc/bib/tarray2d.h | 2 +- 5 files changed, 11 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-13 0.2.1
2026-02-11 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-24 0.1.1
2020-10-13 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-12 0.4.0
2025-11-30 0.3.7
2025-11-11 0.3.6
2025-11-07 0.3.5
2025-10-12 0.3.2
2025-09-27 0.3.1
2025-09-11 0.3.0
2025-07-14 0.2.6
2025-04-05 0.2.5
2024-12-22 0.2.4
Title: A Collection of Handy, Useful Functions
Description: A set of little functions that have been found useful to do little
odds and ends such as plotting the results of K-means clustering, substituting
special text characters, viewing parts of a data.frame, constructing formulas
from text and building design and response matrices.
Author: Jared P. Lander [cre, aut],
Nicholas Galasinao [ctb],
Joshua Kraut [ctb],
Daniel Chen [ctb]
Maintainer: Jared P. Lander <packages@jaredlander.com>
Diff between useful versions 1.2.6.1 dated 2023-10-24 and 1.2.7 dated 2026-02-26
useful-1.2.6.1/useful/R/loadPackages.r |only useful-1.2.6.1/useful/man/load_packages.Rd |only useful-1.2.6.1/useful/man/useful.Rd |only useful-1.2.6.1/useful/tests/testthat/test-load-packages.R |only useful-1.2.7/useful/DESCRIPTION | 19 useful-1.2.7/useful/LICENSE | 6 useful-1.2.7/useful/MD5 | 231 ++-- useful-1.2.7/useful/NAMESPACE | 166 +-- useful-1.2.7/useful/NEWS.md | 143 +- useful-1.2.7/useful/R/ColumnReorder.r | 156 +-- useful-1.2.7/useful/R/MapToInterval.r | 80 - useful-1.2.7/useful/R/binary.flip.r | 38 useful-1.2.7/useful/R/buildFormula.r | 72 - useful-1.2.7/useful/R/buildMatrix.r | 326 +++--- useful-1.2.7/useful/R/checkCase.r | 216 ++-- useful-1.2.7/useful/R/classCheck.r | 58 - useful-1.2.7/useful/R/comparisons.r | 96 - useful-1.2.7/useful/R/coordinates.r | 209 ++-- useful-1.2.7/useful/R/corner.r | 686 +++++++------- useful-1.2.7/useful/R/formatters.r | 374 +++---- useful-1.2.7/useful/R/hartigan.r | 411 ++++---- useful-1.2.7/useful/R/impute.r | 269 ++--- useful-1.2.7/useful/R/indices.r | 88 - useful-1.2.7/useful/R/intervals.r | 72 - useful-1.2.7/useful/R/kmeansPlotting.r | 214 ++-- useful-1.2.7/useful/R/knitting.r | 92 - useful-1.2.7/useful/R/reclass.r | 62 - useful-1.2.7/useful/R/regex.r | 158 +-- useful-1.2.7/useful/R/shiftColumn.r | 106 +- useful-1.2.7/useful/R/subMultiple.r | 94 - useful-1.2.7/useful/R/subspecials.r | 176 +-- useful-1.2.7/useful/R/time.single.R | 72 - useful-1.2.7/useful/R/tsPlot.r | 524 +++++----- useful-1.2.7/useful/R/unique.r | 150 +-- useful-1.2.7/useful/R/useful-package.r | 16 useful-1.2.7/useful/README.md | 19 useful-1.2.7/useful/man/ComputeHartigan.Rd | 88 - useful-1.2.7/useful/man/FitKMeans.Rd | 116 +- useful-1.2.7/useful/man/ForceDataFrame.Rd | 46 useful-1.2.7/useful/man/MapToInterval.Rd | 82 - useful-1.2.7/useful/man/PlotHartigan.Rd | 119 +- useful-1.2.7/useful/man/WhichCorner.Rd | 112 +- useful-1.2.7/useful/man/autoplot.acf.Rd | 75 - useful-1.2.7/useful/man/binary.flip.Rd | 50 - useful-1.2.7/useful/man/bottomleft.Rd | 94 - useful-1.2.7/useful/man/bottomright.Rd | 94 - useful-1.2.7/useful/man/build.formula.Rd | 72 - useful-1.2.7/useful/man/build.x.Rd | 118 +- useful-1.2.7/useful/man/build.y.Rd | 62 - useful-1.2.7/useful/man/cart2pol.Rd | 108 +- useful-1.2.7/useful/man/classdf.Rd | 60 - useful-1.2.7/useful/man/colsToFront.Rd | 76 - useful-1.2.7/useful/man/compare.list.Rd | 68 - useful-1.2.7/useful/man/constant.Rd | 64 - useful-1.2.7/useful/man/corner.Rd | 143 +- useful-1.2.7/useful/man/find.case.Rd | 66 - useful-1.2.7/useful/man/fortify.acf.Rd | 66 - useful-1.2.7/useful/man/fortify.kmeans.Rd | 84 - useful-1.2.7/useful/man/fortify.ts.Rd | 69 - useful-1.2.7/useful/man/indexToPosition.Rd | 64 - useful-1.2.7/useful/man/interval.check.Rd | 68 - useful-1.2.7/useful/man/left.Rd | 90 - useful-1.2.7/useful/man/lower.case.Rd | 60 - useful-1.2.7/useful/man/mixed.case.Rd | 60 - useful-1.2.7/useful/man/moveToFront.Rd | 76 - useful-1.2.7/useful/man/multiple.Rd | 104 +- useful-1.2.7/useful/man/multiple.comma.Rd | 80 - useful-1.2.7/useful/man/multiple.dollar.Rd | 78 - useful-1.2.7/useful/man/multiple.identity.Rd | 76 - useful-1.2.7/useful/man/multiple_format.Rd | 74 - useful-1.2.7/useful/man/numeric.case.Rd | 62 - useful-1.2.7/useful/man/plot.acf.Rd | 50 - useful-1.2.7/useful/man/plot.kmeans.Rd | 112 +- useful-1.2.7/useful/man/plotTimesSeries.Rd | 115 +- useful-1.2.7/useful/man/pol2cart.Rd | 92 - useful-1.2.7/useful/man/positionToIndex.Rd | 68 - useful-1.2.7/useful/man/reclass.Rd | 72 - useful-1.2.7/useful/man/right.Rd | 90 - useful-1.2.7/useful/man/shift.column.Rd | 83 - useful-1.2.7/useful/man/simple.impute.Rd | 80 - useful-1.2.7/useful/man/simple.impute.data.frame.Rd | 78 - useful-1.2.7/useful/man/simple.impute.default.Rd | 74 - useful-1.2.7/useful/man/simple.impute.tbl_df.Rd | 78 - useful-1.2.7/useful/man/subMultiple.Rd | 90 - useful-1.2.7/useful/man/subOut.Rd | 74 - useful-1.2.7/useful/man/subSpecials.Rd | 82 - useful-1.2.7/useful/man/timeSingle.Rd | 76 - useful-1.2.7/useful/man/topleft.Rd | 94 - useful-1.2.7/useful/man/topright.Rd | 94 - useful-1.2.7/useful/man/ts.plotter.Rd | 79 - useful-1.2.7/useful/man/uniqueBidirection.Rd | 90 - useful-1.2.7/useful/man/upper.case.Rd | 60 - useful-1.2.7/useful/man/useful-package.Rd |only useful-1.2.7/useful/man/vplayout.Rd | 62 - useful-1.2.7/useful/tests/testthat.R | 8 useful-1.2.7/useful/tests/testthat/test-TimeSingle.R | 112 +- useful-1.2.7/useful/tests/testthat/test-binaryFlip.r | 30 useful-1.2.7/useful/tests/testthat/test-buildFormula.r | 30 useful-1.2.7/useful/tests/testthat/test-case-checker.r | 146 +- useful-1.2.7/useful/tests/testthat/test-classdf.r | 44 useful-1.2.7/useful/tests/testthat/test-comparisons.r | 40 useful-1.2.7/useful/tests/testthat/test-coordinates.R | 330 +++--- useful-1.2.7/useful/tests/testthat/test-corner.r | 482 ++++----- useful-1.2.7/useful/tests/testthat/test-formatters.r | 229 ++-- useful-1.2.7/useful/tests/testthat/test-hartigan.r | 74 - useful-1.2.7/useful/tests/testthat/test-indices.R | 170 +-- useful-1.2.7/useful/tests/testthat/test-intervals.r | 64 - useful-1.2.7/useful/tests/testthat/test-kmeansPlotting.R | 64 - useful-1.2.7/useful/tests/testthat/test-mapToInterval.r | 116 +- useful-1.2.7/useful/tests/testthat/test-matrix.R | 556 +++++------ useful-1.2.7/useful/tests/testthat/test-move-cols.r | 120 +- useful-1.2.7/useful/tests/testthat/test-reclass.r | 54 - useful-1.2.7/useful/tests/testthat/test-regex.r | 78 - useful-1.2.7/useful/tests/testthat/test-shiftColumn.r | 86 - useful-1.2.7/useful/tests/testthat/test-simple-impute.r | 194 +-- useful-1.2.7/useful/tests/testthat/test-sub-specials.r | 116 +- useful-1.2.7/useful/tests/testthat/test-subMultiple.R | 96 - useful-1.2.7/useful/tests/testthat/test-tsplot.r | 130 +- useful-1.2.7/useful/tests/testthat/test-unique.R | 68 - 119 files changed, 6742 insertions(+), 6711 deletions(-)
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 3.0.14 dated 2026-02-16 and 3.0.15 dated 2026-02-26
tweedie |only 1 file changed
Title: A Traceability Focused Grammar of Clinical Data Summary
Description: A traceability focused tool created to simplify the data manipulation necessary to create clinical summaries.
Author: Eli Miller [aut] ,
Mike Stackhouse [aut, cre] ,
Ashley Tarasiewicz [aut],
Nathan Kosiba [ctb] ,
Sadchla Mascary [ctb],
Andrew Bates [ctb],
Shiyu Chen [ctb],
Oleksii Mikryukov [ctb],
Atorus Research LLC [cph]
Maintainer: Mike Stackhouse <mike.stackhouse@atorusresearch.com>
Diff between Tplyr versions 1.2.1 dated 2024-02-20 and 1.3.2 dated 2026-02-26
DESCRIPTION | 25 MD5 | 167 +-- NAMESPACE | 4 NEWS.md | 17 R/assertions.R | 8 R/collapse_row_labels.R | 1 R/count.R | 1463 ++++++++++++++++++-------------- R/denom.R | 163 +-- R/desc.R | 468 ++++++---- R/gather_defaults.R | 36 R/layer.R | 24 R/meta-builders.R | 92 +- R/nested.R | 292 ++++-- R/num_fmt.R | 182 +++ R/pop_data.R | 83 - R/prebuild.R | 194 ++-- R/process_metadata.R | 437 +++++---- R/regex.R | 26 R/riskdiff.R | 115 +- R/shift.R | 361 +++++-- R/sort.R | 1303 ++++++++++++++++------------ R/stats.R | 228 +++- R/str_extractors.R | 18 R/utils.R | 37 R/zzz.R | 179 --- README.md | 27 build/vignette.rds |binary inst/design |only inst/doc/Tplyr.R | 2 inst/doc/Tplyr.html | 53 - inst/doc/count.R | 4 inst/doc/count.html | 1 inst/doc/custom-metadata.R | 4 inst/doc/custom-metadata.html | 1 inst/doc/denom.R | 6 inst/doc/denom.Rmd | 24 inst/doc/denom.html | 274 +++-- inst/doc/desc.R | 7 inst/doc/desc.Rmd | 6 inst/doc/desc.html | 3 inst/doc/desc_layer_formatting.R | 2 inst/doc/desc_layer_formatting.html | 289 +++--- inst/doc/general_string_formatting.R | 4 inst/doc/general_string_formatting.html | 15 inst/doc/layer_templates.R | 2 inst/doc/layer_templates.Rmd | 12 inst/doc/layer_templates.html | 28 inst/doc/metadata.R | 16 inst/doc/metadata.html | 9 inst/doc/options.R | 41 inst/doc/options.Rmd | 6 inst/doc/options.html | 29 inst/doc/post_processing.R | 4 inst/doc/post_processing.html | 41 inst/doc/shift.R | 4 inst/doc/shift.Rmd | 10 inst/doc/shift.html | 20 inst/doc/table.R | 2 inst/doc/table.html | 75 - man/Tplyr.Rd | 3 man/get_tplyr_regex.Rd | 9 man/str_extractors.Rd | 2 tests/benchmarks |only tests/testthat/_snaps/count.md | 2 tests/testthat/_snaps/print.md | 4 tests/testthat/_snaps/riskdiff.md | 119 ++ tests/testthat/test-build.R | 19 tests/testthat/test-count.R | 23 tests/testthat/test-nested.R |only tests/testthat/test-num_fmt.R | 44 tests/testthat/test-pop_data.R | 298 ++++++ tests/testthat/test-print.R | 15 tests/testthat/test-riskdiff.R | 23 tests/testthat/test-set_limit_data_by.R | 61 + tests/testthat/test-shift.R | 15 tests/testthat/test-sort.R | 183 ++-- tests/testthat/test-str_extractors.R | 28 tests/testthat/test-table_bindings.R | 71 + tests/testthat/test-utils.R | 69 + vignettes/denom.Rmd | 24 vignettes/desc.Rmd | 6 vignettes/layer_templates.Rmd | 12 vignettes/options.Rmd | 6 vignettes/shift.Rmd | 10 84 files changed, 5004 insertions(+), 2986 deletions(-)
Title: Data and Functions for the Book Modern Statistical Graphics
Description: A companion to the Chinese book ``Modern Statistical Graphics''.
Author: Yihui Xie [aut, cre] ,
Peng Zhao [aut],
Lijia Yu [ctb],
Xiangyun Huang [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between MSG versions 0.8 dated 2021-07-21 and 0.9 dated 2026-02-26
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/MSG-package.R | 6 +----- R/msg.R | 11 ++++++++--- README.md | 2 +- man/MSG-package.Rd | 11 +++++++++-- 7 files changed, 35 insertions(+), 23 deletions(-)
Title: Interpretable Bivariate Density Visualization with 'ggplot2'
Description: The 'ggplot2' package provides simple functions for visualizing contours
of 2-d kernel density estimates. 'ggdensity' implements several additional density estimators
as well as more interpretable visualizations based on highest density regions instead of
the traditional height of the estimated density surface.
Author: James Otto [aut, cre, cph] ,
David Kahle [aut]
Maintainer: James Otto <jamesotto852@gmail.com>
Diff between ggdensity versions 1.0.0 dated 2023-02-09 and 1.0.1 dated 2026-02-26
DESCRIPTION | 15 LICENSE | 4 MD5 | 176 NAMESPACE | 108 NEWS.md | 98 R/attach.R | 13 R/get_hdr.R | 510 R/get_hdr_1d.R | 468 R/ggdensity-package.R | 35 R/hdr.R | 480 R/hdr_fun.R | 398 R/hdr_lines.R | 162 R/hdr_lines_fun.R | 164 R/hdr_points.R | 256 R/hdr_points_fun.R | 304 R/hdr_rug.R | 716 R/hdr_rug_fun.R | 454 R/helpers-ggplot2.R | 166 R/helpers.R | 61 R/method.R | 928 R/method_1d.R | 492 build/vignette.rds |binary inst/doc/method.R | 422 inst/doc/method.Rmd | 826 inst/doc/method.html | 1652 - man/geom_hdr.Rd | 454 man/geom_hdr_fun.Rd | 418 man/geom_hdr_points.Rd | 360 man/geom_hdr_points_fun.Rd | 410 man/geom_hdr_rug.Rd | 422 man/geom_hdr_rug_fun.Rd | 398 man/get_hdr.Rd | 270 man/get_hdr_1d.Rd | 232 man/ggdensity.Rd | 35 man/method_freqpoly.Rd | 84 man/method_freqpoly_1d.Rd | 86 man/method_histogram.Rd | 122 man/method_histogram_1d.Rd | 88 man/method_kde.Rd | 106 man/method_kde_1d.Rd | 174 man/method_mvnorm.Rd | 60 man/method_norm_1d.Rd | 58 tests/testthat.R | 24 tests/testthat/_snaps/Linux |only tests/testthat/_snaps/Windows |only tests/testthat/_snaps/macOS |only tests/testthat/_snaps/visual-tests/geom-hdr-fun-ggplot.svg | 130 tests/testthat/_snaps/visual-tests/geom-hdr-ggplot.svg | 134 tests/testthat/_snaps/visual-tests/geom-hdr-lines-ggplot.svg | 134 tests/testthat/_snaps/visual-tests/geom-hdr-points-fun-ggplot.svg |only tests/testthat/_snaps/visual-tests/geom-hdr-points-ggplot.svg |10140 +++++----- tests/testthat/_snaps/visual-tests/geom-hdr-prob-order-ggplot.svg |only tests/testthat/_snaps/visual-tests/geom-hdr-rug-fun-ggplot.svg | 1138 - tests/testthat/_snaps/visual-tests/geom-hdr-rug-ggplot.svg | 1604 - tests/testthat/_snaps/visual-tests/geom-hdr-rug-prob-order-ggplot.svg |only tests/testthat/_snaps/visual-tests/stat-hdr-fun-ggplot.svg | 130 tests/testthat/_snaps/visual-tests/stat-hdr-ggplot.svg | 134 tests/testthat/_snaps/visual-tests/stat-hdr-lines-ggplot.svg | 134 tests/testthat/_snaps/visual-tests/stat-hdr-points-fun-ggplot.svg |only tests/testthat/_snaps/visual-tests/stat-hdr-points-ggplot.svg |10140 +++++----- tests/testthat/_snaps/visual-tests/stat-hdr-rug-fun-ggplot.svg | 1138 - tests/testthat/_snaps/visual-tests/stat-hdr-rug-ggplot.svg | 1604 - tests/testthat/test-fix_probs.R | 36 tests/testthat/test-get_hdr.R | 574 tests/testthat/test-get_hdr_1d.R | 178 tests/testthat/test-layer-wrappers.R | 154 tests/testthat/test-res_to_df.R | 58 tests/testthat/test-res_to_df_1d.R | 30 tests/testthat/test-visual-tests.R | 162 vignettes/method.Rmd | 826 70 files changed, 20842 insertions(+), 20445 deletions(-)
Title: Use R for Fun
Description: A collection of R games and other funny stuff, such as the
classic Mine sweeper and sliding puzzles.
Author: Yihui Xie [aut, cre] ,
Yixuan Qiu [aut],
Taiyun Wei [aut]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between fun versions 0.3 dated 2020-10-23 and 0.4 dated 2026-02-26
fun-0.3/fun/NEWS |only fun-0.3/fun/inst/js/tagcloud.swf |only fun-0.4/fun/DESCRIPTION | 18 ++++++++++-------- fun-0.4/fun/MD5 | 25 ++++++++++++------------- fun-0.4/fun/NEWS.md |only fun-0.4/fun/R/fun-package.R | 6 +----- fun-0.4/fun/R/tag_cloud.R | 2 +- fun-0.4/fun/README.md | 5 ++++- fun-0.4/fun/data/tagData.rda |binary fun-0.4/fun/man/fun-package.Rd | 10 +++++++++- fun-0.4/fun/man/lights_out.Rd | 2 +- fun-0.4/fun/man/mine_sweeper.Rd | 2 +- fun-0.4/fun/man/shutdown.Rd | 6 +++--- fun-0.4/fun/man/sliding_puzzle.Rd | 2 +- fun-0.4/fun/man/tag_cloud.Rd | 4 ++-- 15 files changed, 45 insertions(+), 37 deletions(-)
Title: Flexible Cutoffs for Model Fit Evaluation in Covariance-Based
Structural Models
Description: A toolbox to derive flexible cutoffs for fit indices in
'Covariance-based Structural Equation Modeling' based on the paper by
'Niemand & Mai (2018)' <doi:10.1007/s11747-018-0602-9>. Flexible
cutoffs are an alternative to fixed cutoffs - rules-of-thumb -
regarding an appropriate cutoff for fit indices such as 'CFI' or
'SRMR'. It has been demonstrated that these flexible cutoffs perform
better than fixed cutoffs in grey areas where misspecification is not
easy to detect. The package provides an alternative to the tool at
<https://flexiblecutoffs.org> as it allows to tailor flexible cutoffs
to a given dataset and model, which is so far not available in the
tool. The package simulates fit indices based on a given dataset and
model and then estimates the flexible cutoffs. Some useful functions,
e.g., to determine the 'GoF-' or 'BoF-nature' of a fit index, are
provided. So far, additional options for a relative use (is a model
better than another?) are provided in an explorat [...truncated...]
Author: Thomas Niemand [aut, cre] ,
Robert Mai [ctb] ,
Nadine Schroeder [ctb] ,
Andreas Falke [ctb]
Maintainer: Thomas Niemand <thomas.niemand@gmail.com>
Diff between FCO versions 2.0.1 dated 2026-02-13 and 2.0.2 dated 2026-02-26
FCO-2.0.1/FCO/man/figures |only FCO-2.0.2/FCO/DESCRIPTION | 6 +- FCO-2.0.2/FCO/MD5 | 21 ++++---- FCO-2.0.2/FCO/NEWS.md | 8 ++- FCO-2.0.2/FCO/R/flex_co.R | 7 +- FCO-2.0.2/FCO/R/flex_co2.R | 34 +++++++------- FCO-2.0.2/FCO/R/get_cos.R | 94 +++++++++++++++------------------------ FCO-2.0.2/FCO/README.md | 9 ++- FCO-2.0.2/FCO/build/partial.rdb |binary FCO-2.0.2/FCO/build/vignette.rds |binary FCO-2.0.2/FCO/inst/doc/FCO.html | 2 FCO-2.0.2/FCO/man/flex_co2.Rd | 3 - 12 files changed, 88 insertions(+), 96 deletions(-)
Title: 'C++' Implementations of Functional Enrichment Analysis
Description: Fast implementations of functional enrichment analysis methods using 'C++' via 'Rcpp'.
Currently provides Over-Representation Analysis (ORA) and Gene Set Enrichment Analysis (GSEA).
The multilevel GSEA algorithm is derived from the 'fgsea' package.
Methods are described in Subramanian et al. (2005) <doi:10.1073/pnas.0506580102> and Korotkevich et al. (2021) <doi:10.1101/060012>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between enrichit versions 0.1.1 dated 2026-02-01 and 0.1.2 dated 2026-02-26
DESCRIPTION | 6 ++-- MD5 | 13 +++++---- NEWS.md | 12 +++++++++ R/ora_gson.R | 24 ++++++++++++++++++ R/utilities.R | 56 ++++++++++++++++++++++++++++++++++++++++--- inst/doc/enrichit.html | 10 +++---- src/enrichit.cpp | 9 ++---- tests/testthat/test-qvalue.R |only 8 files changed, 107 insertions(+), 23 deletions(-)
Title: Fit Continuous-Time Correlated Random Walk Models to Animal
Movement Data
Description: Fit continuous-time correlated random walk models with time indexed
covariates to animal telemetry data. The model is fit using the Kalman-filter on
a state space version of the continuous-time stochastic movement process.
Author: Devin S. Johnson [aut, cre],
Josh London [aut],
Brett T. McClintock [ctb],
Kenady Wilson [ctb]
Maintainer: Devin S. Johnson <devin.johnson@noaa.gov>
Diff between crawl versions 2.3.0 dated 2022-10-09 and 2.3.1 dated 2026-02-26
DESCRIPTION | 12 +++++++----- MD5 | 18 +++++++++--------- R/argosDiag2Cov.R | 2 +- R/crawl-internal.R | 14 ++++++++++++++ R/crawl-package.R | 11 +++++------ R/crwPredict.R | 15 +++++---------- R/crw_coerce_sf.R | 2 +- inst/CITATION | 23 +++-------------------- man/crawl-package.Rd | 12 ++++++++++-- man/crwPredict.Rd | 13 ++++--------- 10 files changed, 59 insertions(+), 63 deletions(-)
Title: Analyzing Data with Cellwise Outliers
Description: Tools for detecting cellwise outliers and robust methods to analyze
data which may contain them. Contains the implementation of the algorithms described in
Rousseeuw and Van den Bossche (2018) <doi:10.1080/00401706.2017.1340909> (open access)
Hubert et al. (2019) <doi:10.1080/00401706.2018.1562989> (open access),
Raymaekers and Rousseeuw (2021) <doi:10.1080/00401706.2019.1677270> (open access),
Raymaekers and Rousseeuw (2021) <doi:10.1007/s10994-021-05960-5> (open access),
Raymaekers and Rousseeuw (2021) <doi:10.52933/jdssv.v1i3.18> (open access),
Raymaekers and Rousseeuw (2022) <doi:10.1080/01621459.2023.2267777> (open access)
Rousseeuw (2022) <doi:10.1016/j.ecosta.2023.01.007> (open access).
Examples can be found in the vignettes:
"DDC_examples", "MacroPCA_examples", "wrap_examples", "transfo_examples",
"DI_examples", "cellMCD_examples" , "Correspondence_analysis_examples",
and "cellwise_weights_examples".
Author: Jakob Raymaekers [aut, cre],
Peter Rousseeuw [aut],
Wannes Van den Bossche [ctb],
Mia Hubert [ctb]
Maintainer: Jakob Raymaekers <jakob.raymaekers@uantwerpen.be>
Diff between cellWise versions 2.5.5 dated 2026-01-08 and 2.5.7 dated 2026-02-26
DESCRIPTION | 8 MD5 | 32 - R/RcppExports.R | 4 R/TVCN.R | 386 ++++++++++------ R/cellMCD.R | 148 ------ inst/doc/Correspondence_analysis_examples.html | 2 inst/doc/DDC_examples.html | 2 inst/doc/DI_examples.html | 6 inst/doc/MacroPCA_examples.html | 2 inst/doc/cellMCD_examples.html | 511 ++++++++++----------- inst/doc/cellwise_weights_examples.html | 2 inst/doc/transfo_examples.html | 14 inst/doc/wrap_examples.html | 2 src/Main.cpp | 322 ------------- src/RcppExports.cpp | 37 - src/cellMCD.cpp | 589 +++++++++++++++++++------ src/cellMCD.h | 23 17 files changed, 1062 insertions(+), 1028 deletions(-)
Title: Local Large Language Model Inference Engine
Description: Enables R users to run large language models locally using 'GGUF' model files
and the 'llama.cpp' inference engine. Provides a complete R interface for loading models,
generating text completions, and streaming responses in real-time. Supports local
inference without requiring cloud APIs or internet connectivity, ensuring complete
data privacy and control. Based on the 'llama.cpp' project by Georgi Gerganov (2023) <https://github.com/ggml-org/llama.cpp>.
Author: Pawan Rama Mali [aut, cre, cph],
Georgi Gerganov [aut, cph] ,
The ggml authors [cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
pi6am [ctb] ,
Ivan Yurchenko [ctb] ,
Dirk Eddelbuettel [ctb, rev]
Maintainer: Pawan Rama Mali <prm@outlook.in>
Diff between edgemodelr versions 0.1.6 dated 2026-02-07 and 0.2.0 dated 2026-02-25
edgemodelr-0.1.6/edgemodelr/cleanup |only edgemodelr-0.2.0/edgemodelr/DESCRIPTION | 8 edgemodelr-0.2.0/edgemodelr/MD5 | 50 edgemodelr-0.2.0/edgemodelr/NAMESPACE | 10 edgemodelr-0.2.0/edgemodelr/NEWS.md |only edgemodelr-0.2.0/edgemodelr/R/RcppExports.R | 8 edgemodelr-0.2.0/edgemodelr/R/api.R | 525 ++++++++-- edgemodelr-0.2.0/edgemodelr/R/ollama.R | 2 edgemodelr-0.2.0/edgemodelr/R/zzz.R | 26 edgemodelr-0.2.0/edgemodelr/man/dot-compute_sha256.Rd |only edgemodelr-0.2.0/edgemodelr/man/dot-is_writable_dir.Rd |only edgemodelr-0.2.0/edgemodelr/man/dot-known_hashes_path.Rd |only edgemodelr-0.2.0/edgemodelr/man/edge_benchmark.Rd | 5 edgemodelr-0.2.0/edgemodelr/man/edge_cache_info.Rd |only edgemodelr-0.2.0/edgemodelr/man/edge_clean_cache.Rd | 15 edgemodelr-0.2.0/edgemodelr/man/edge_completion.Rd | 21 edgemodelr-0.2.0/edgemodelr/man/edge_download_model.Rd | 30 edgemodelr-0.2.0/edgemodelr/man/edge_download_url.Rd | 30 edgemodelr-0.2.0/edgemodelr/man/edge_load_model.Rd | 14 edgemodelr-0.2.0/edgemodelr/man/edge_quick_setup.Rd | 29 edgemodelr-0.2.0/edgemodelr/man/edge_resolve_model_name.Rd |only edgemodelr-0.2.0/edgemodelr/man/edge_simd_info.Rd |only edgemodelr-0.2.0/edgemodelr/man/edge_stream_completion.Rd | 23 edgemodelr-0.2.0/edgemodelr/src/Makevars | 87 + edgemodelr-0.2.0/edgemodelr/src/Makevars.win | 56 - edgemodelr-0.2.0/edgemodelr/src/RcppExports.cpp | 21 edgemodelr-0.2.0/edgemodelr/src/bindings.cpp | 11 edgemodelr-0.2.0/edgemodelr/src/simd_info.cpp |only edgemodelr-0.2.0/edgemodelr/tests/testthat.R | 8 edgemodelr-0.2.0/edgemodelr/tests/testthat/test-model-aliases.R |only edgemodelr-0.2.0/edgemodelr/tests/testthat/test-utility-functions.R | 8 31 files changed, 817 insertions(+), 170 deletions(-)
Title: Gross Flows Estimation under Complex Surveys
Description: The philosophy in the package is described in Stasny (1988) <doi:10.2307/1391558> and Guti?rrez, A., Trujillo, L. & Silva, N. (2014), <ISSN:1492-0921> to estimate the gross flows under complex surveys using a Markov chain approach with non response.
Author: Acero William [aut, cre],
Gutierrez Andres [aut],
Trujillo Leonardo [aut]
Maintainer: Acero William <wfaceror@unal.edu.co>
Diff between GFE versions 0.1.1 dated 2023-10-25 and 0.1.2 dated 2026-02-25
DESCRIPTION | 19 +- MD5 | 18 +- NAMESPACE | 32 ++-- R/AuxFunctions.R | 186 +++++++++++------------ R/civ_models.R | 4 R/reSam_CIV.R | 362 +++++++++++++++++++++++----------------------- man/createBase.Rd | 124 +++++++-------- man/estGF.Rd | 226 ++++++++++++++-------------- man/reSamGF.Rd | 226 ++++++++++++++-------------- man/round_preserve_sum.Rd | 58 +++---- 10 files changed, 631 insertions(+), 624 deletions(-)
Title: Download Data from Kenneth French's Website
Description: Downloads all the datasets (you can exclude the daily ones or specify a list of those you are targeting specifically) from Kenneth French's Website at <https://mba.tuck.dartmouth.edu/pages/faculty/ken.french/data_library.html>, process them and convert them to list of 'xts' (time series).
Author: Sebastian Stoeckl [aut, cre] ,
Annar Massimov [ctb]
Maintainer: Sebastian Stoeckl <sebastian.stoeckl@uni.li>
Diff between FFdownload versions 1.1.1 dated 2023-10-12 and 1.2.0 dated 2026-02-25
FFdownload-1.1.1/FFdownload/vignettes/README-FFpic-1.png |only FFdownload-1.2.0/FFdownload/DESCRIPTION | 19 FFdownload-1.2.0/FFdownload/LICENSE | 4 FFdownload-1.2.0/FFdownload/MD5 | 65 FFdownload-1.2.0/FFdownload/NAMESPACE | 38 FFdownload-1.2.0/FFdownload/NEWS.md | 116 - FFdownload-1.2.0/FFdownload/R/FFdownload.R | 393 ++-- FFdownload-1.2.0/FFdownload/R/FFget.R |only FFdownload-1.2.0/FFdownload/R/FFlist.R |only FFdownload-1.2.0/FFdownload/R/FFmatch.R |only FFdownload-1.2.0/FFdownload/R/converter.R | 350 ++- FFdownload-1.2.0/FFdownload/R/zzz.R | 8 FFdownload-1.2.0/FFdownload/README.md | 506 +++-- FFdownload-1.2.0/FFdownload/build/vignette.rds |binary FFdownload-1.2.0/FFdownload/inst/CITATION |only FFdownload-1.2.0/FFdownload/inst/doc/FFD-tibble-how-to.R | 141 - FFdownload-1.2.0/FFdownload/inst/doc/FFD-tibble-how-to.Rmd | 238 +- FFdownload-1.2.0/FFdownload/inst/doc/FFD-tibble-how-to.html | 930 +++++----- FFdownload-1.2.0/FFdownload/inst/doc/FFD-xts-how-to.R | 134 - FFdownload-1.2.0/FFdownload/inst/doc/FFD-xts-how-to.Rmd | 239 +- FFdownload-1.2.0/FFdownload/inst/doc/FFD-xts-how-to.html | 916 +++++---- FFdownload-1.2.0/FFdownload/inst/doc/assetpricing.R |only FFdownload-1.2.0/FFdownload/inst/doc/assetpricing.Rmd |only FFdownload-1.2.0/FFdownload/inst/doc/assetpricing.html |only FFdownload-1.2.0/FFdownload/man/FFdownload.Rd | 182 + FFdownload-1.2.0/FFdownload/man/FFget.Rd |only FFdownload-1.2.0/FFdownload/man/FFlist.Rd |only FFdownload-1.2.0/FFdownload/man/FFmatch.Rd |only FFdownload-1.2.0/FFdownload/man/converter.Rd | 38 FFdownload-1.2.0/FFdownload/man/converter_tbl.Rd | 38 FFdownload-1.2.0/FFdownload/man/figures/README-FFpic-1.png |only FFdownload-1.2.0/FFdownload/man/figures/README-example_0-1.png |only FFdownload-1.2.0/FFdownload/man/figures/README-example_0_ffget_plot-1.png |only FFdownload-1.2.0/FFdownload/tests |only FFdownload-1.2.0/FFdownload/vignettes/FFD-tibble-how-to.Rmd | 238 +- FFdownload-1.2.0/FFdownload/vignettes/FFD-xts-how-to.Rmd | 239 +- FFdownload-1.2.0/FFdownload/vignettes/VIGNETTE-FFFourPic-1.png |only FFdownload-1.2.0/FFdownload/vignettes/VIGNETTE-xts_process2-1.png |only FFdownload-1.2.0/FFdownload/vignettes/assetpricing.Rmd |only FFdownload-1.2.0/FFdownload/vignettes/assetpricing_cache |only FFdownload-1.2.0/FFdownload/vignettes/vignettes |only 41 files changed, 2875 insertions(+), 1957 deletions(-)
Title: Temporal Altitudinal Biogeographic Shifts
Description: A standardized workflow to reconstruct spatial configurations of altitude-bounded biogeographic systems over time. For example, 'tabs' can model how island archipelagos expand or contract with changing sea levels or how alpine biomes shift in response to tree line movements. It provides functionality to account for various geophysical processes such as crustal deformation and other tectonic changes, allowing for a more accurate representation of biogeographic system dynamics. For more information see De Groeve et al. (2025) <doi:10.21425/fob.18.151677>.
Author: Johannes De Groeve [aut, cre] ,
Sietze Norder [aut] ,
Eline Sterre Rentier [aut] ,
Suzette Flantua [ctb] ,
Kenneth Rijsdijk [ctb]
Maintainer: Johannes De Groeve <j.degroeve@uva.nl>
This is a re-admission after prior archival of version 0.1.1 dated 2025-04-29
Diff between tabs versions 0.1.1 dated 2025-04-29 and 0.2.0 dated 2026-02-25
DESCRIPTION | 24 ++- MD5 | 30 ++-- NAMESPACE | 12 + R/add_peaks.R | 2 R/explore.R | 345 +++++++++++++++++++++++++++--------------------------- R/extent.R | 13 +- R/get_data.R | 10 + R/get_groups.R |only R/get_reclabs.R | 45 ++++++- R/get_region.R | 24 ++- R/get_tree.R |only R/metrics.R | 208 -------------------------------- R/setup.R | 16 ++ README.md | 2 build/partial.rdb |binary man/get_groups.Rd |only man/get_tree.Rd |only man/get_tsi.Rd |only man/regroup.Rd |only 19 files changed, 305 insertions(+), 426 deletions(-)
Title: A 'Shiny' Tool to Create Interactive Catalogues for Geospatial
Data
Description: Seamlessly create interactive online catalogues for geospatial data. Items can be mapped as points or areas and retrieved using either a map or a dynamic table with search form and optional column filters.
Author: Sebastien Plutniak [aut, cre]
Maintainer: Sebastien Plutniak <sebastien.plutniak@posteo.net>
This is a re-admission after prior archival of version 0.1.3 dated 2025-08-27
Diff between spatialCatalogueViewer versions 0.1.3 dated 2025-08-27 and 0.2.0 dated 2026-02-25
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 3 +-- NEWS.md | 10 ++++++++++ R/app_server.R | 26 +++++++++++++++----------- R/spatialCatalogueViewer.R | 21 +++++++++++++++++++-- man/spatialCatalogueViewer.Rd | 13 ++++++++++--- 7 files changed, 66 insertions(+), 29 deletions(-)
More information about spatialCatalogueViewer at CRAN
Permanent link
Title: Gaussian Mixture Graphical Model Learning and Inference
Description: Gaussian mixture graphical models include Bayesian networks and
dynamic Bayesian networks (their temporal extension) whose local probability
distributions are described by Gaussian mixture models. They are powerful
tools for graphically and quantitatively representing nonlinear dependencies
between continuous variables. This package provides a complete framework to
create, manipulate, learn the structure and the parameters, and perform
inference in these models. Most of the algorithms are described in the PhD
thesis of Roos (2018) <https://theses.hal.science/tel-01943718>.
Author: Jeremy Roos [aut, cre, cph],
RATP Group [fnd, cph]
Maintainer: Jeremy Roos <jeremy.roos@gmail.com>
Diff between gmgm versions 1.1.2 dated 2022-09-08 and 1.1.3 dated 2026-02-25
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/data_air.R | 2 +- R/network.R | 2 +- man/data_air.Rd | 2 +- 6 files changed, 17 insertions(+), 12 deletions(-)
Title: Fine-Gray Regression via Forward-Backward Scan
Description: In competing risks regression, the proportional subdistribution hazards (PSH) model is popular for its direct assessment of covariate effects on the cumulative incidence function. This package allows for both penalized and unpenalized PSH regression in linear time using a novel forward-backward scan. Penalties include Ridge, Lease Absolute Shrinkage and Selection Operator (LASSO), Smoothly Clipped Absolute Deviation (SCAD), Minimax Concave Plus (MCP), and elastic net <doi: 10.32614/RJ-2021-010>.
Author: Eric S. Kawaguchi [aut, cre]
Maintainer: Eric S. Kawaguchi <ekawaguc@usc.edu>
This is a re-admission after prior archival of version 1.24.10 dated 2024-10-28
Diff between fastcmprsk versions 1.24.10 dated 2024-10-28 and 1.26.1 dated 2026-02-25
fastcmprsk-1.24.10/fastcmprsk/src/Makevars |only fastcmprsk-1.26.1/fastcmprsk/DESCRIPTION | 8 ++++---- fastcmprsk-1.26.1/fastcmprsk/MD5 | 5 ++--- fastcmprsk-1.26.1/fastcmprsk/README.md | 2 +- 4 files changed, 7 insertions(+), 8 deletions(-)
Title: Easy Visualization of Conditional Effects from Regression Models
Description: Offers a flexible and user-friendly interface for visualizing conditional
effects from a broad range of regression models, including mixed-effects and generalized
additive (mixed) models. Compatible model types include lm(), rlm(), glm(), glm.nb(),
betareg(), and gam() (from 'mgcv'); nonlinear models via nls(); generalized least
squares via gls(); and survival models via coxph() (from 'survival').
Mixed-effects models with random intercepts and/or slopes can be fitted using lmer(),
glmer(), glmer.nb(), glmmTMB(), or gam() (from 'mgcv', via smooth terms).
Plots are rendered using base R graphics with extensive customization options.
Approximate confidence intervals for nls() and betareg() models are computed using
the delta method. Robust standard errors for rlm() are computed using the sandwich
estimator (Zeileis 2004) <doi:10.18637/jss.v011.i10>. For beta regression using
'betareg', see Cribari-Neto and Zeileis (2010) <doi:10.18637/jss.v034.i02>. For
mixed-effects models w [...truncated...]
Author: Luca Corlatti [aut, cre]
Maintainer: Luca Corlatti <lucac1980@yahoo.it>
Diff between easyViz versions 2.0.1 dated 2026-01-24 and 2.0.2 dated 2026-02-25
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 7 ++++++- R/ez-utils.R | 16 +++++++++++++--- 4 files changed, 26 insertions(+), 11 deletions(-)
Title: Systematically Run R CMD Checks
Description: Systematically Run R checks against multiple packages. Checks are run in
parallel with strategies to minimize dependency installation. Provides
out of the box interface for running reverse dependency check.
Author: Szymon Maksymiuk [cre, aut] ,
Doug Kelkhoff [aut] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Szymon Maksymiuk <sz.maksymiuk@gmail.com>
Diff between checked versions 0.5.0 dated 2026-02-20 and 0.5.1 dated 2026-02-25
DESCRIPTION | 6 +++--- MD5 | 37 +++++++++++++++++++------------------ NAMESPACE | 4 ++++ NEWS.md | 8 ++++++++ R/results.R | 31 ++++++++++++++++++++++++++++--- R/run.R | 10 +++++----- R/task.R | 4 ++-- R/utils-enums.R | 4 +++- man/STATUS.Rd | 10 +++++++++- man/check_pkgs.Rd | 1 + man/check_rev_deps.Rd | 1 + man/checker.Rd | 1 + man/new_checker.Rd | 2 ++ man/print.checked_results.Rd | 3 ++- man/results.Rd | 3 ++- man/results_to_df.Rd |only man/run.Rd | 2 +- tests/testthat/_snaps/deps.md | 4 ++-- tests/testthat/test-check.R | 3 +++ tests/testthat/test-deps.R | 10 ++++++++++ 20 files changed, 106 insertions(+), 38 deletions(-)
Title: Simulate, Evaluate, and Analyze Dose Finding Trials with
Bayesian MCPMod
Description: Bayesian MCPMod (Fleischer et al. (2022)
<doi:10.1002/pst.2193>) is an innovative method that improves the
traditional MCPMod by systematically incorporating historical data,
such as previous placebo group data. This package offers functions
for simulating, analyzing, and evaluating Bayesian MCPMod trials with
normally and binary distributed endpoints. It enables the assessment of trial
designs incorporating historical data across various true
dose-response relationships and sample sizes. Robust mixture prior
distributions, such as those derived with the Meta-Analytic-Predictive
approach (Schmidli et al. (2014) <doi:10.1111/biom.12242>), can be
specified for each dose group. Resulting mixture posterior
distributions are used in the Bayesian Multiple Comparison Procedure
and modeling steps. The modeling step also includes a weighted model
averaging approach (Pinheiro et al. (2014) <doi:10.1002/sim.6052>).
Estimated dose-response relationships can be bootstrapped and
v [...truncated...]
Author: Boehringer Ingelheim Pharma GmbH & Co. KG [cph, fnd],
Stephan Wojciekowski [aut, cre],
Lars Andersen [aut],
Jonas Schick [ctb],
Sebastian Bossert [aut]
Maintainer: Stephan Wojciekowski <stephan.wojciekowski@boehringer-ingelheim.com>
Diff between BayesianMCPMod versions 1.3.0 dated 2026-02-23 and 1.3.1 dated 2026-02-25
DESCRIPTION | 6 ++--- MD5 | 26 +++++++++++----------- NEWS.md | 7 +++++- R/BMCPMod.R | 5 ---- R/assessDesign.R | 2 - R/bootstrapping.R | 5 ---- R/plot.R | 42 +++++++++++++++++++----------------- R/utils.R | 14 ++++++++++-- inst/doc/Simulation_Comparison.html | 4 +-- inst/doc/Simulation_Example.html | 4 +-- inst/doc/analysis_normal.html | 4 +-- inst/doc/binary_endpoint.html | 4 +-- man/assessDesign.Rd | 4 +++ man/plot.modelFits.Rd | 14 ++++++------ 14 files changed, 79 insertions(+), 62 deletions(-)
More information about BayesianMCPMod at CRAN
Permanent link
Title: Utilities for Producing Maps
Description: Provides a minimal, light-weight set of tools for producing nice looking maps in R, with support for map projections. See Brown (2016) <doi:10.32614/RJ-2016-005>.
Author: Patrick Brown [aut, cre, cph]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between mapmisc versions 2.1.2 dated 2026-01-12 and 2.1.3 dated 2026-02-25
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/wrapPoly.R | 15 ++++++++++----- inst/doc/mapmisc.pdf |binary inst/doc/north.html | 29 ++++++++++++++++------------- inst/doc/perspective.html | 32 ++++++++++++++++---------------- 6 files changed, 51 insertions(+), 43 deletions(-)
Title: Create Interactive Gantt Charts with Work Breakdown Structure
Description: Create Primavera-style interactive Gantt charts with Work Breakdown
Structure (WBS) hierarchy and activities. Features include color-coded WBS
items, indented labels, scrollable views for large projects, dynamic date
formatting, and the ability to dim past activities. Built on top of 'plotly'
for interactive visualizations.
Author: Ahmed Aredah [aut, cre]
Maintainer: Ahmed Aredah <Ahmed.Aredah@gmail.com>
Diff between ganttify versions 0.2.1 dated 2026-01-22 and 0.2.2 dated 2026-02-25
DESCRIPTION | 6 +- MD5 | 10 ++-- NEWS.md | 12 ++++ R/Ganttify.R | 138 ++++++++++++++++++++++++++++++++------------------------ README.md | 24 +++++++++ man/Ganttify.Rd | 7 ++ 6 files changed, 128 insertions(+), 69 deletions(-)
Title: Utilities for Interacting with the 'Posit Connect' Server API
Description: Provides a helpful 'R6' class and methods for interacting with
the 'Posit Connect' Server API along with some meaningful utility functions
for regular tasks. API documentation varies by 'Posit Connect' installation
and version, but the latest documentation is also hosted publicly at
<https://docs.posit.co/connect/api/>.
Author: Kara Woo [aut, cre],
Toph Allen [aut],
Neal Richardson [aut],
Sean Lopp [aut],
Cole Arendt [aut],
Posit, PBC [cph, fnd]
Maintainer: Kara Woo <kara.woo@posit.co>
Diff between connectapi versions 0.10.0 dated 2026-01-16 and 0.11.0 dated 2026-02-25
connectapi-0.10.0/connectapi/man/get_image.Rd |only connectapi-0.10.0/connectapi/man/set_image.Rd |only connectapi-0.11.0/connectapi/DESCRIPTION | 6 connectapi-0.11.0/connectapi/MD5 | 116 +++++----- connectapi-0.11.0/connectapi/NAMESPACE | 6 connectapi-0.11.0/connectapi/NEWS.md | 17 + connectapi-0.11.0/connectapi/R/connect.R | 10 connectapi-0.11.0/connectapi/R/content.R | 33 ++- connectapi-0.11.0/connectapi/R/get.R | 31 ++ connectapi-0.11.0/connectapi/R/groups.R | 23 +- connectapi-0.11.0/connectapi/R/page.R | 34 +-- connectapi-0.11.0/connectapi/R/parse.R | 40 +-- connectapi-0.11.0/connectapi/R/ptype.R | 5 connectapi-0.11.0/connectapi/R/runtime-caches.R | 2 connectapi-0.11.0/connectapi/R/schedule.R | 49 +++- connectapi-0.11.0/connectapi/R/tags.R | 4 connectapi-0.11.0/connectapi/R/thumbnail.R | 118 ---------- connectapi-0.11.0/connectapi/build/vignette.rds |binary connectapi-0.11.0/connectapi/inst/doc/customize-http.html | 4 connectapi-0.11.0/connectapi/inst/doc/getting-started.html | 4 connectapi-0.11.0/connectapi/man/PositConnect.Rd | 11 - connectapi-0.11.0/connectapi/man/content_delete.Rd | 2 connectapi-0.11.0/connectapi/man/content_item.Rd | 2 connectapi-0.11.0/connectapi/man/content_title.Rd | 2 connectapi-0.11.0/connectapi/man/content_update.Rd | 2 connectapi-0.11.0/connectapi/man/create_random_name.Rd | 2 connectapi-0.11.0/connectapi/man/dashboard_url.Rd | 2 connectapi-0.11.0/connectapi/man/delete_thumbnail.Rd | 2 connectapi-0.11.0/connectapi/man/delete_vanity_url.Rd | 2 connectapi-0.11.0/connectapi/man/deploy_repo.Rd | 2 connectapi-0.11.0/connectapi/man/environment.Rd | 2 connectapi-0.11.0/connectapi/man/get_associations.Rd | 2 connectapi-0.11.0/connectapi/man/get_bundles.Rd | 4 connectapi-0.11.0/connectapi/man/get_jobs.Rd | 2 connectapi-0.11.0/connectapi/man/get_log.Rd | 2 connectapi-0.11.0/connectapi/man/get_thumbnail.Rd | 2 connectapi-0.11.0/connectapi/man/get_usage.Rd | 9 connectapi-0.11.0/connectapi/man/get_vanity_url.Rd | 2 connectapi-0.11.0/connectapi/man/git.Rd | 2 connectapi-0.11.0/connectapi/man/has_thumbnail.Rd | 2 connectapi-0.11.0/connectapi/man/lock_content.Rd | 2 connectapi-0.11.0/connectapi/man/paging.Rd | 9 connectapi-0.11.0/connectapi/man/permissions.Rd | 2 connectapi-0.11.0/connectapi/man/search_content.Rd | 2 connectapi-0.11.0/connectapi/man/set_integrations.Rd | 2 connectapi-0.11.0/connectapi/man/set_run_as.Rd | 2 connectapi-0.11.0/connectapi/man/set_schedule.Rd | 4 connectapi-0.11.0/connectapi/man/set_thumbnail.Rd | 2 connectapi-0.11.0/connectapi/man/set_vanity_url.Rd | 2 connectapi-0.11.0/connectapi/man/swap_vanity_urls.Rd | 2 connectapi-0.11.0/connectapi/man/terminate_jobs.Rd | 2 connectapi-0.11.0/connectapi/man/verify_content_name.Rd | 2 connectapi-0.11.0/connectapi/tests/integrated/test-deploy.R | 132 ------------ connectapi-0.11.0/connectapi/tests/integrated/test-get.R | 5 connectapi-0.11.0/connectapi/tests/integrated/test-lazy.R | 5 connectapi-0.11.0/connectapi/tests/integrated/test-misc.R | 6 connectapi-0.11.0/connectapi/tests/testthat/2026.01.0 |only connectapi-0.11.0/connectapi/tests/testthat/test-content.R | 96 ++++++++ connectapi-0.11.0/connectapi/tests/testthat/test-get.R | 35 +++ connectapi-0.11.0/connectapi/tests/testthat/test-parse.R | 39 +++ 60 files changed, 417 insertions(+), 494 deletions(-)
Title: Testing for Shiny Applications
Description: Automated unit testing of Shiny applications through a
headless 'Chromium' browser.
Author: Barret Schloerke [cre, aut] ,
Posit Software, PBC [cph, fnd] ,
Winston Chang [ctb] ,
Gabor Csardi [ctb] ,
Hadley Wickham [ctb] ,
Mango Solutions [cph, ccp]
Maintainer: Barret Schloerke <barret@posit.co>
Diff between shinytest2 versions 0.5.0 dated 2026-01-09 and 0.5.1 dated 2026-02-25
DESCRIPTION | 11 +- MD5 | 75 ++++++++-------- NEWS.md | 20 ++++ R/record-test.R | 62 +++++++++---- R/test-app.R | 86 +++++++++++++++---- build/vignette.rds |binary inst/doc/in-depth.R | 4 inst/doc/in-depth.Rmd | 4 inst/doc/in-depth.html | 5 - inst/doc/robust.R | 2 inst/doc/robust.Rmd | 2 inst/doc/robust.html | 3 inst/doc/shinytest2.R | 8 - inst/doc/shinytest2.Rmd | 10 +- inst/doc/shinytest2.html | 13 +- inst/doc/use-application-audit.R | 4 inst/doc/use-application-audit.Rmd | 4 inst/doc/use-application-audit.html | 5 - inst/doc/use-ci.html | 1 inst/doc/use-package.R | 57 ++++++++++++ inst/doc/use-package.Rmd | 112 ++++++++++++++++++++++++ inst/doc/use-package.html | 162 ++++++++++++++++++++++++++++++++---- inst/doc/using-monkey-testing.R | 12 +- inst/doc/using-monkey-testing.Rmd | 12 +- inst/doc/using-monkey-testing.html | 13 +- inst/doc/z-migration.html | 1 inst/doc/zzz-faq.Rmd | 4 inst/doc/zzz-faq.html | 12 ++ man/app_support.Rd | 90 ++++++++++++++++---- man/record_test.Rd | 4 tests/testthat/test-not-testing.R | 1 tests/testthat/test-record-test.R |only vignettes/in-depth.Rmd | 4 vignettes/robust.Rmd | 2 vignettes/shinytest2.Rmd | 10 +- vignettes/use-application-audit.Rmd | 4 vignettes/use-package.Rmd | 112 ++++++++++++++++++++++++ vignettes/using-monkey-testing.Rmd | 12 +- vignettes/zzz-faq.Rmd | 4 39 files changed, 768 insertions(+), 179 deletions(-)
More information about HaploDiploidEquilibrium at CRAN
Permanent link
Title: Synthesize Bio API Wrapper
Description: Access Synthesize Bio models from their API <https://app.synthesize.bio/> using
this wrapper that provides a convenient interface to the Synthesize Bio API, allowing users
to generate realistic gene expression data based on specified biological conditions. This package
enables researchers to easily access AI-generated transcriptomic data for various
modalities including bulk RNA-seq, single-cell RNA-seq, microarray data, and more.
Author: Synthesize Bio [aut, cre]
Maintainer: Synthesize Bio <candace@synthesize.bio>
Diff between rsynthbio versions 4.0.1 dated 2026-02-13 and 4.1.0 dated 2026-02-25
rsynthbio-4.0.1/rsynthbio/man/default_output_transformer.Rd |only rsynthbio-4.0.1/rsynthbio/tests/testthat/test-integration-predict-metadata.R |only rsynthbio-4.0.1/rsynthbio/tests/testthat/test-integration-reference-conditioning.R |only rsynthbio-4.0.1/rsynthbio/tests/testthat/test-live-api.R |only rsynthbio-4.1.0/rsynthbio/DESCRIPTION | 6 rsynthbio-4.1.0/rsynthbio/MD5 | 33 +--- rsynthbio-4.1.0/rsynthbio/NEWS.md | 10 + rsynthbio-4.1.0/rsynthbio/R/call_model_api.R | 20 +- rsynthbio-4.1.0/rsynthbio/R/output-transformers.R | 77 +++++++--- rsynthbio-4.1.0/rsynthbio/inst/doc/baseline.Rmd | 4 rsynthbio-4.1.0/rsynthbio/inst/doc/baseline.html | 6 rsynthbio-4.1.0/rsynthbio/inst/doc/reference-conditioning.R | 8 - rsynthbio-4.1.0/rsynthbio/inst/doc/reference-conditioning.Rmd | 14 - rsynthbio-4.1.0/rsynthbio/inst/doc/reference-conditioning.html | 16 +- rsynthbio-4.1.0/rsynthbio/man/OUTPUT_TRANSFORMERS.Rd | 3 rsynthbio-4.1.0/rsynthbio/man/get_output_transformer.Rd | 5 rsynthbio-4.1.0/rsynthbio/man/predict_query.Rd | 4 rsynthbio-4.1.0/rsynthbio/man/transform_metadata_output.Rd |only rsynthbio-4.1.0/rsynthbio/vignettes/baseline.Rmd | 4 rsynthbio-4.1.0/rsynthbio/vignettes/reference-conditioning.Rmd | 14 - 20 files changed, 141 insertions(+), 83 deletions(-)
Title: Retrieve Global River Gauge Data
Description: Provides access to global river gauge data from a variety of national-level river agencies. The package interfaces with the national-level agency websites to provide access to river gauge locations, river discharge, and river stage. Currently, the package is available for the following countries: Australia, Brazil, Canada, Chile, France, Japan, South Africa, the United Kingdom, and the United States.
Author: Ryan Riggs [aut, cre] ,
Simon Moulds [aut] ,
Michel Wortmann [aut] ,
Louise Slater [aut] ,
George Allen [aut]
Maintainer: Ryan Riggs <ryanriggs7@gmail.com>
Diff between RivRetrieve versions 0.1.7 dated 2026-02-18 and 0.1.8 dated 2026-02-25
DESCRIPTION | 6 +- MD5 | 34 +++++++------ NAMESPACE | 4 + NEWS.md | 18 ++++--- R/australia.R | 13 +++-- R/canada.R | 23 +++++--- R/france.R | 4 - R/ireland.R |only R/japan.R | 109 ++++++++++++++++++------------------------ R/scotland.R |only R/southAfrica.R | 118 ++++++++++++++++++++++++++-------------------- R/sysdata.rda |binary README.md | 2 inst/doc/my-vignette.Rmd | 2 inst/doc/my-vignette.html | 11 ++-- man/canada.Rd | 3 - man/ireland.Rd |only man/japan.Rd | 6 +- man/scotland.Rd |only vignettes/my-vignette.Rmd | 2 20 files changed, 190 insertions(+), 165 deletions(-)
Title: Improving Interaction Modelling and Interpretability in Random
Forests
Description: Implementation of the unity forest (UFO) framework (Hornung & Hapfelmeier, 2026,
<doi:10.48550/arXiv.2601.07003>).
UFOs are a random forest variant designed to better take covariates with purely
interaction-based effects into account, including interactions for which none of the involved
covariates exhibits a marginal effect.
While this framework tends to improve discrimination and predictive accuracy compared
to standard random forests, it also facilitates the identification and interpretation of
(marginal or interactive) effects: In addition to the UFO algorithm for tree construction,
the package includes the unity variable importance measure (unity VIM), which quantifies
covariate effects under the conditions in which they are strongest - either marginally
or within subgroups defined by interactions - as well as covariate-representative tree
roots (CRTRs) that provide interpretable visualizations of these conditions.
Categorical and continuous outcomes are supported.
This [...truncated...]
Author: Roman Hornung [aut, cre],
Marvin N. Wright [ctb, cph]
Maintainer: Roman Hornung <hornung@ibe.med.uni-muenchen.de>
Diff between unityForest versions 0.1.0 dated 2026-01-30 and 0.2.0 dated 2026-02-25
unityForest-0.1.0/unityForest/src/Hungarian.cpp |only unityForest-0.1.0/unityForest/src/Hungarian.h |only unityForest-0.2.0/unityForest/DESCRIPTION | 10 unityForest-0.2.0/unityForest/MD5 | 96 unityForest-0.2.0/unityForest/NEWS.md | 10 unityForest-0.2.0/unityForest/R/RcppExports.R | 4 unityForest-0.2.0/unityForest/R/onAttach.R |only unityForest-0.2.0/unityForest/R/predict.unityfor.R | 58 unityForest-0.2.0/unityForest/R/print.R | 4 unityForest-0.2.0/unityForest/R/reprTrees.R | 363 + unityForest-0.2.0/unityForest/R/stock.R |only unityForest-0.2.0/unityForest/R/unityForest-package.R | 7 unityForest-0.2.0/unityForest/R/unityfor.R | 126 unityForest-0.2.0/unityForest/R/utility.R | 2 unityForest-0.2.0/unityForest/data/stock.rda |only unityForest-0.2.0/unityForest/man/predict.unityfor.Rd | 23 unityForest-0.2.0/unityForest/man/reprTrees.Rd | 108 unityForest-0.2.0/unityForest/man/stock.Rd |only unityForest-0.2.0/unityForest/man/unityForest-package.Rd | 5 unityForest-0.2.0/unityForest/man/unityfor.Rd | 76 unityForest-0.2.0/unityForest/src/Data.cpp | 433 - unityForest-0.2.0/unityForest/src/Data.h | 375 - unityForest-0.2.0/unityForest/src/DataChar.cpp | 49 unityForest-0.2.0/unityForest/src/DataChar.h | 86 unityForest-0.2.0/unityForest/src/DataDouble.h | 88 unityForest-0.2.0/unityForest/src/DataFloat.cpp | 33 unityForest-0.2.0/unityForest/src/DataFloat.h | 77 unityForest-0.2.0/unityForest/src/DataRcpp.h | 97 unityForest-0.2.0/unityForest/src/DataSparse.cpp | 37 unityForest-0.2.0/unityForest/src/DataSparse.h | 85 unityForest-0.2.0/unityForest/src/Forest.cpp | 2553 ++++----- unityForest-0.2.0/unityForest/src/Forest.h | 575 -- unityForest-0.2.0/unityForest/src/ForestClassification.cpp | 512 - unityForest-0.2.0/unityForest/src/ForestClassification.h | 155 unityForest-0.2.0/unityForest/src/ForestProbability.cpp | 567 -- unityForest-0.2.0/unityForest/src/ForestProbability.h | 172 unityForest-0.2.0/unityForest/src/ForestRegression.cpp | 306 - unityForest-0.2.0/unityForest/src/ForestRegression.h | 65 unityForest-0.2.0/unityForest/src/RcppExports.cpp | 15 unityForest-0.2.0/unityForest/src/Tree.cpp | 2341 +------- unityForest-0.2.0/unityForest/src/Tree.h | 667 +- unityForest-0.2.0/unityForest/src/TreeClassification.cpp | 3437 ++----------- unityForest-0.2.0/unityForest/src/TreeClassification.h | 303 - unityForest-0.2.0/unityForest/src/TreeProbability.cpp | 3284 ++---------- unityForest-0.2.0/unityForest/src/TreeProbability.h | 323 - unityForest-0.2.0/unityForest/src/TreeRegression.cpp | 1766 +++--- unityForest-0.2.0/unityForest/src/TreeRegression.h | 201 unityForest-0.2.0/unityForest/src/divforCpp.cpp | 256 unityForest-0.2.0/unityForest/src/globals.h | 161 unityForest-0.2.0/unityForest/src/utility.cpp | 1153 ++-- unityForest-0.2.0/unityForest/src/utility.h | 1004 +-- unityForest-0.2.0/unityForest/src/utilityRcpp.cpp | 23 52 files changed, 8238 insertions(+), 13853 deletions(-)
Title: Volume Approximation and Sampling of Convex Polytopes
Description: Provides an R interface for 'volesti' C++ package. 'volesti' computes estimations of volume
of polytopes given by (i) a set of points, (ii) linear inequalities or (iii) Minkowski sum of segments
(a.k.a. zonotopes). There are three algorithms for volume estimation as well as algorithms
for sampling, rounding and rotating polytopes. Moreover, 'volesti' provides algorithms for
estimating copulas useful in computational finance. Methods implemented in 'volesti' are described
in A. Chalkis and V. Fisikopoulos (2022) <doi:10.32614/RJ-2021-077> and references therein.
Author: Vissarion Fisikopoulos [aut, cre, cph] ,
Apostolos Chalkis [aut, cph]
Maintainer: Vissarion Fisikopoulos <vissarion.fisikopoulos@gmail.com>
Diff between volesti versions 1.1.2-9 dated 2025-04-29 and 1.1.2-10 dated 2026-02-25
DESCRIPTION | 15 ++++++++------- MD5 | 8 ++++---- NEWS.md | 3 +++ src/RcppExports.cpp | 1 - src/include/cartesian_geom/point.h | 2 +- 5 files changed, 16 insertions(+), 13 deletions(-)
Title: Modular Cohort-Building Framework for Analytical Dashboards
Description: You can easily add advanced cohort-building component
to your analytical dashboard or simple 'Shiny' app.
Then you can instantly start building cohorts using multiple
filters of different types, filtering datasets, and filtering steps.
Filters can be complex and data-specific, and together
with multiple filtering steps you can use complex filtering rules.
The cohort-building sidebar panel allows you to easily
work with filters, add and remove filtering steps.
It helps you with handling missing values during filtering,
and provides instant filtering feedback with filter feedback plots.
The GUI panel is not only compatible with native shiny
bookmarking, but also provides reproducible R code.
Author: Krystian Igras [cre, aut],
Kamil Wais [aut],
Adam Forys [ctb]
Maintainer: Krystian Igras <krystian8207@gmail.com>
Diff between shinyCohortBuilder versions 0.3.1 dated 2024-10-14 and 0.4.0 dated 2026-02-25
DESCRIPTION | 24 +- MD5 | 72 ++++---- NAMESPACE | 4 NEWS.md | 8 R/actions.R | 217 ++++++++++++++++++++++++-- R/app.R | 13 - R/cb_layer.R | 18 ++ R/filter_datetime_range.R |only R/filter_discrete.R | 6 R/filter_discrete_text.R | 2 R/filter_multi_discrete.R | 2 R/filter_query.R | 2 R/filter_range.R | 37 +++- R/renders.R | 138 ++++++++++++---- R/source.R | 19 ++ R/source_tblist.R | 25 ++- R/ui_utils.R | 14 + build/vignette.rds |binary inst/doc/custom-gui-layer.R | 316 +++++++++++++++++++------------------- inst/doc/custom-gui-layer.html | 281 +++++++++++++++++---------------- inst/doc/gui-filter-layer.R | 262 +++++++++++++++---------------- inst/doc/gui-filter-layer.html | 323 +++++++++++++++++++-------------------- inst/doc/shinyCohortBuilder.R | 112 ++++++------- inst/doc/shinyCohortBuilder.html | 237 ++++++++++++++-------------- inst/doc/updating-source.R | 162 +++++++++---------- inst/doc/updating-source.html | 163 +++++++++---------- inst/www/scb.css | 24 ++ inst/www/scb.js | 58 ++++++- inst/www/scb.min.css | 2 inst/www/scb.min.js | 2 man/cb_changed.Rd | 4 man/cb_ui.Rd | 63 +++++++ man/demo_app.Rd | 3 man/filter-position.Rd |only man/gui-filter-layer.Rd | 7 man/gui.Rd | 5 man/scb_icons.Rd | 2 man/scb_labels.Rd | 2 38 files changed, 1564 insertions(+), 1065 deletions(-)
More information about shinyCohortBuilder at CRAN
Permanent link
Title: Stochastic Approximation Expectation Maximization (SAEM)
Algorithm
Description: The 'saemix' package implements the Stochastic Approximation EM algorithm for parameter estimation in (non)linear mixed effects models. It (i) computes the maximum likelihood estimator of the population parameters, without any approximation of the model (linearisation, quadrature approximation,...), using the Stochastic Approximation Expectation Maximization (SAEM) algorithm, (ii) provides standard errors for the maximum likelihood estimator (iii) estimates the conditional modes, the conditional means and the conditional standard deviations of the individual parameters, using the Hastings-Metropolis algorithm (see Comets et al. (2017) <doi:10.18637/jss.v080.i03>). Many applications of SAEM in agronomy, animal breeding and PKPD analysis have been published by members of the Monolix group. The full PDF documentation for the package including references about the algorithm and examples can be downloaded on the github of the IAME research institute for 'saemix': <https://github.co [...truncated...]
Author: Emmanuelle Comets [aut, cre],
Audrey Lavenu [aut],
Marc Lavielle [aut],
Belhal Karimi [aut],
Maud Delattre [ctb],
Alexandra Lavalley-Morelle [ctb],
Marilou Chanel [ctb],
Johannes Ranke [ctb] ,
Sofia Kaisaridi [ctb],
Lucie Fayette [ctb]
Maintainer: Emmanuelle Comets <emmanuelle.comets@inserm.fr>
Diff between saemix versions 3.4 dated 2025-07-31 and 3.5 dated 2026-02-25
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/SaemixData-methods.R | 4 ++-- R/SaemixObject.R | 5 ++++- R/func_aux.R | 2 ++ R/func_bootstrap.R | 2 ++ R/func_discreteVPC.R | 10 +++++----- R/func_exploreData.R | 36 ++++++++++++++++++------------------ R/zzz.R | 2 +- 9 files changed, 45 insertions(+), 38 deletions(-)
Title: Event Classification, Visualization and Analysis of Eye Tracking
Data
Description: Functions for analysing eye tracking data, including event detection, visualizations and area of interest (AOI) based analyses.
The package includes implementations of the IV-T, I-DT, adaptive velocity threshold, and Identification by two means clustering (I2MC) algorithms.
See separate documentation for each function. The principles underlying I-VT and I-DT algorithms are described in Salvucci & Goldberg (2000) <doi:10.1145/355017.355028>.
Two-means clustering is described in Hessels et al. (2017), <doi: 10.3758/s13428-016-0822-1>.
The adaptive velocity threshold algorithm is described in Nyström & Holmqvist (2010),<doi:10.3758/BRM.42.1.188>.
A documentation of the 'kollaR' can be found in Kleberg et al (2026) <doi:10.3758/s13428-025-02903-z>. Cite this paper when using 'kollaR'
See a demonstration in the URL.
Author: Johan Lundin Kleberg [aut, cre]
Maintainer: Johan Lundin Kleberg <johan.lundin.kleberg@su.se>
Diff between kollaR versions 1.1.2 dated 2025-09-19 and 1.1.3 dated 2026-02-25
kollaR-1.1.2/kollaR/build |only kollaR-1.1.3/kollaR/DESCRIPTION | 13 +- kollaR-1.1.3/kollaR/MD5 | 12 +- kollaR-1.1.3/kollaR/R/VisualizationFunctions.R | 133 ++++++++++++++++++++++++- kollaR-1.1.3/kollaR/inst/CITATION | 24 +++- kollaR-1.1.3/kollaR/man/kollaR-package.Rd | 6 - kollaR-1.1.3/kollaR/man/static_plot.Rd | 7 - kollaR-1.1.3/kollaR/man/static_plot_minimal.Rd |only 8 files changed, 165 insertions(+), 30 deletions(-)
Title: UK Epidemiological Data Management
Description: Contains utilities and functions for the cleaning, processing and
management of patient level public health data for surveillance
and analysis held by the UK Health Security Agency, UKHSA.
Author: Alice Graham [aut] ,
Harshana Liyanage [aut] ,
Frederick Sloots [aut, cre] ,
Emma Parker [aut] ,
Alex Bhattacharya [aut]
Maintainer: Frederick Sloots <frederick.sloots@ukhsa.gov.uk>
Diff between epidm versions 1.0.4 dated 2022-07-11 and 1.0.6 dated 2026-02-25
DESCRIPTION | 42 - MD5 | 97 +- NAMESPACE | 5 NEWS.md | 63 + R/continuous_inpatient_spells.R | 112 ++- R/csv_from_zip.R | 42 + R/data.R | 79 ++ R/globals.R | 63 + R/group_time.R | 199 ++++- R/hospital_in_out_dates.R |only R/inpatient_codes.R | 189 ----- R/lab_data.R |only R/link_ae_inpatient.R | 682 +++++++++++++++++-- R/lookup_recode.R | 157 +++- R/patient_id.R | 882 +++++++++++++++++-------- R/proxy_episode_dates.R | 109 ++- R/respeciate_generic.R | 79 +- R/sql_clean.R | 13 R/sql_connect.R | 41 - R/sql_readwrite.R | 92 +- R/sysdata.rda |only R/valid_nhs.R | 48 - README.md | 22 build |only data/group_ecds_discharge_destination.rda |only data/group_inpatient_admission_method.rda |only data/group_inpatient_discharge_destination.rda |only data/lab_data.rda |only inst/doc |only man/cip_spells.Rd | 55 - man/csv_from_zip.Rd | 2 man/figures/logo.png |only man/group_ecds_discharge_destination.Rd |only man/group_inpatient_admission_method.Rd |only man/group_inpatient_discharge_destination.Rd |only man/group_time.Rd | 108 ++- man/hospital_in_out_dates.Rd |only man/inpatient_codes.Rd | 182 ----- man/lab_data.Rd |only man/link_ae_inpatient.Rd | 358 +++++++++- man/lookup_recode.Rd | 62 + man/proxy_episode_dates.Rd | 42 - man/respeciate_generic.Rd | 14 man/sql_clean.Rd | 1 man/sql_read.Rd | 2 man/sql_write.Rd | 2 man/uk_patient_id.Rd | 226 ++++-- man/valid_nhs.Rd | 38 - tests |only vignettes |only 50 files changed, 3024 insertions(+), 1084 deletions(-)
More information about hydrodownloadR at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-04-06 0.8.2
2023-08-24 0.8.1