Title: Download Data from Mexico's Air Quality Information System
Description: Easy-to-use functions for downloading air quality data from
the Mexican National Air Quality Information System (SINAICA). Allows
you to query pollution and meteorological parameters from more than a
hundred monitoring stations located throughout Mexico. See
<https://sinaica.inecc.gob.mx> for more information.
Author: Diego Valle-Jones [aut, cre]
Maintainer: Diego Valle-Jones <diego@diegovalle.net>
Diff between rsinaica versions 1.1.0 dated 2024-06-21 and 1.1.1 dated 2026-02-27
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 6 ++++-- data/stations_sinaica.rda |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary tests/testthat/test-sinaica_params_and_dates.R | 4 ++-- 7 files changed, 17 insertions(+), 15 deletions(-)
Title: Metabolomics Data Analysis Functions
Description: A collection of functions for processing and analyzing metabolite data.
The namesake function mrbin() converts 1D
or 2D Nuclear Magnetic Resonance data into a matrix of values suitable for further data analysis and
performs basic processing steps in a reproducible way. Negative values, a
common issue in such data, can be replaced by positive values (<doi:10.1021/acs.jproteome.0c00684>). All used
parameters are stored in a readable text file and can be restored from that
file to enable exact reproduction of the data at a later time. The function fia() ranks features according
to their impact on classifier models, especially artificial neural network models.
Author: Matthias Klein [aut, cre]
Maintainer: Matthias Klein <matthias.s.klein@gmx.net>
Diff between mrbin versions 1.9.4 dated 2025-07-16 and 1.9.5 dated 2026-02-27
mrbin-1.9.4/mrbin/inst/extdata/TMP |only mrbin-1.9.5/mrbin/DESCRIPTION | 10 mrbin-1.9.5/mrbin/MD5 | 30 mrbin-1.9.5/mrbin/NAMESPACE | 2 mrbin-1.9.5/mrbin/NEWS.md | 11 mrbin-1.9.5/mrbin/R/mrbin.R | 2812 ++++++++++++++++---------- mrbin-1.9.5/mrbin/README.md | 6 mrbin-1.9.5/mrbin/build/vignette.rds |binary mrbin-1.9.5/mrbin/inst/doc/mrbin.Rnw | 6 mrbin-1.9.5/mrbin/inst/doc/mrbin.pdf |binary mrbin-1.9.5/mrbin/inst/extdata/def2 |only mrbin-1.9.5/mrbin/inst/extdata/ord |only mrbin-1.9.5/mrbin/man/annotatemrbin.Rd | 40 mrbin-1.9.5/mrbin/man/createAnnotationList.Rd |only mrbin-1.9.5/mrbin/man/mrplot.Rd | 2 mrbin-1.9.5/mrbin/man/plotPCA.Rd | 5 mrbin-1.9.5/mrbin/man/plotResults.Rd | 10 mrbin-1.9.5/mrbin/vignettes/mrbin.Rnw | 6 18 files changed, 1873 insertions(+), 1067 deletions(-)
Title: Fast Utilities for Year Month Day Objects
Description: A collection of utility functions for working with
Year Month Day objects. Includes functions for fast parsing of numeric
and character input based on algorithms described in Hinnant, H. (2021)
<https://howardhinnant.github.io/date_algorithms.html> as well as a branchless
calculation of leap years by Jerichaux (2025) <https://stackoverflow.com/a/79564914>.
Author: Tim Taylor [aut, cre] ,
Howard Hinnant [aut] ,
jerichaux [aut]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between fastymd versions 0.1.4 dated 2025-10-03 and 0.1.5 dated 2026-02-27
DESCRIPTION | 6 +-- MD5 | 17 ++++----- NEWS.md | 4 ++ README.md | 21 ++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/fastymd.Rmd | 7 ++- inst/doc/fastymd.html | 93 +++++++++++++++++++++++++++++++------------------- vignettes/assets |only vignettes/fastymd.Rmd | 7 ++- 10 files changed, 92 insertions(+), 63 deletions(-)
Title: Algebra over Probability Distributions
Description: Provides an algebra over probability distributions enabling
composition, sampling, and automatic simplification to closed forms.
Supports normal, exponential, gamma, Weibull, chi-squared, uniform,
beta, log-normal, Poisson, multivariate normal, empirical, and mixture
distributions with algebraic operators (addition, subtraction,
multiplication, division, power, exp, log, min, max) that automatically
simplify when mathematical identities apply. Includes closed-form MVN
conditioning (Schur complement), affine transformations, mixture
marginals/conditionals (Bayes rule), and limiting distribution builders
(CLT, LLN, delta method). Uses S3 classes for distributions and R6
for support objects.
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <lex@metafunctor.com>
Diff between algebraic.dist versions 0.1.0 dated 2025-12-17 and 0.9.1 dated 2026-02-27
algebraic.dist-0.1.0/algebraic.dist/man/limit.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/DESCRIPTION | 20 algebraic.dist-0.9.1/algebraic.dist/MD5 | 447 +++++++--- algebraic.dist-0.9.1/algebraic.dist/NAMESPACE | 181 ++++ algebraic.dist-0.9.1/algebraic.dist/NEWS.md | 101 ++ algebraic.dist-0.9.1/algebraic.dist/R/algebra.R | 226 ++++- algebraic.dist-0.9.1/algebraic.dist/R/beta_dist.R |only algebraic.dist-0.9.1/algebraic.dist/R/chi_squared.R |only algebraic.dist-0.9.1/algebraic.dist/R/countable_set.R |only algebraic.dist-0.9.1/algebraic.dist/R/dist.R | 58 + algebraic.dist-0.9.1/algebraic.dist/R/edist.R | 430 ++++++++- algebraic.dist-0.9.1/algebraic.dist/R/empirical_dist.R | 149 +++ algebraic.dist-0.9.1/algebraic.dist/R/exponential.R | 76 + algebraic.dist-0.9.1/algebraic.dist/R/finite_set.R | 19 algebraic.dist-0.9.1/algebraic.dist/R/gamma_dist.R |only algebraic.dist-0.9.1/algebraic.dist/R/generic_dist.R | 105 ++ algebraic.dist-0.9.1/algebraic.dist/R/interval.R | 22 algebraic.dist-0.9.1/algebraic.dist/R/limits.R |only algebraic.dist-0.9.1/algebraic.dist/R/lognormal.R |only algebraic.dist-0.9.1/algebraic.dist/R/mixture.R |only algebraic.dist-0.9.1/algebraic.dist/R/mvn.R | 271 +++++- algebraic.dist-0.9.1/algebraic.dist/R/normal.R | 72 + algebraic.dist-0.9.1/algebraic.dist/R/poisson_dist.R |only algebraic.dist-0.9.1/algebraic.dist/R/realize.R |only algebraic.dist-0.9.1/algebraic.dist/R/realized_dist.R |only algebraic.dist-0.9.1/algebraic.dist/R/support.R | 23 algebraic.dist-0.9.1/algebraic.dist/R/uniform_dist.R |only algebraic.dist-0.9.1/algebraic.dist/R/univariate_dist.R | 17 algebraic.dist-0.9.1/algebraic.dist/R/utils.R | 19 algebraic.dist-0.9.1/algebraic.dist/R/weibull_dist.R |only algebraic.dist-0.9.1/algebraic.dist/README.md | 178 ++- algebraic.dist-0.9.1/algebraic.dist/build/vignette.rds |binary algebraic.dist-0.9.1/algebraic.dist/inst/doc/algebra.R |only algebraic.dist-0.9.1/algebraic.dist/inst/doc/algebra.Rmd |only algebraic.dist-0.9.1/algebraic.dist/inst/doc/algebra.html |only algebraic.dist-0.9.1/algebraic.dist/inst/doc/example.html | 136 +-- algebraic.dist-0.9.1/algebraic.dist/inst/doc/multivariate.R |only algebraic.dist-0.9.1/algebraic.dist/inst/doc/multivariate.Rmd |only algebraic.dist-0.9.1/algebraic.dist/inst/doc/multivariate.html |only algebraic.dist-0.9.1/algebraic.dist/man/Math.dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/affine_transform.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/as_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/cdf.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/cdf.empirical_dist.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/cdf.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/cdf.gamma_dist.Rd 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algebraic.dist-0.9.1/algebraic.dist/man/dist_summary_group.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/dot-dist.Rd | 14 algebraic.dist-0.9.1/algebraic.dist/man/edist.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/empirical_dist.Rd | 13 algebraic.dist-0.9.1/algebraic.dist/man/ensure_realized.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/expectation.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/expectation.dist.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/expectation.empirical_dist.Rd | 5 algebraic.dist-0.9.1/algebraic.dist/man/expectation.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/expectation.univariate_dist.Rd | 12 algebraic.dist-0.9.1/algebraic.dist/man/expectation_data.Rd | 12 algebraic.dist-0.9.1/algebraic.dist/man/exponential.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/format.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.empirical_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.exponential.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.mvn.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.normal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.realized_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/format.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/has.Rd | 12 algebraic.dist-0.9.1/algebraic.dist/man/has.countable_set.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/has.finite_set.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/has.interval.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/hazard.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/hazard.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/hazard.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/hazard.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/hazard.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/hazard.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/infimum.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/infimum.countable_set.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/infimum.finite_set.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/infimum.interval.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/inv_cdf.edist.Rd |only 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algebraic.dist-0.9.1/algebraic.dist/man/is_lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_mvn.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/is_normal.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/is_poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_realized_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/is_weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/lln.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/marginal.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/marginal.empirical_dist.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/marginal.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/marginal.mvn.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/mean.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.edist.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/mean.empirical_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/mean.exponential.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/mean.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.mvn.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/mean.normal.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/mean.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mean.univariate_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/mean.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/mvn.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/nobs.empirical_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/normal.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/normal_approx.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/nparams.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/nparams.empirical_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/nparams.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/obs.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/obs.empirical_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/params.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/params.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.edist.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/params.empirical_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/params.exponential.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/params.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.mvn.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/params.normal.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/params.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/params.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/plus-.dist.Rd | 17 algebraic.dist-0.9.1/algebraic.dist/man/poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/pow-.dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.edist.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/print.empirical_dist.Rd | 11 algebraic.dist-0.9.1/algebraic.dist/man/print.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/print.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.interval.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/print.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.mvn.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/print.normal.Rd | 11 algebraic.dist-0.9.1/algebraic.dist/man/print.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.realized_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.summary_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/print.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/print.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/realize.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/realized_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/rmap.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/rmap.dist.Rd | 16 algebraic.dist-0.9.1/algebraic.dist/man/rmap.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/rmap.empirical_dist.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/rmap.mvn.Rd | 11 algebraic.dist-0.9.1/algebraic.dist/man/sample_mvn_region.Rd | 11 algebraic.dist-0.9.1/algebraic.dist/man/sampler.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/sampler.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.default.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/sampler.edist.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/sampler.empirical_dist.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/sampler.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/sampler.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.mvn.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/sampler.normal.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/sampler.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sampler.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/simplify.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/simplify.dist.Rd | 8 algebraic.dist-0.9.1/algebraic.dist/man/simplify.edist.Rd | 43 algebraic.dist-0.9.1/algebraic.dist/man/slash-.dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/summary.dist.Rd | 3 algebraic.dist-0.9.1/algebraic.dist/man/summary_dist.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/sup.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/sup.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.edist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.empirical_dist.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/sup.exponential.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/sup.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.mvn.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/sup.normal.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/sup.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/sup.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/supremum.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/supremum.countable_set.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/supremum.finite_set.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/supremum.interval.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/surv.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/surv.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/surv.exponential.Rd | 6 algebraic.dist-0.9.1/algebraic.dist/man/surv.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/surv.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/surv.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/times-.dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.beta_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.chi_squared.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.default.Rd | 3 algebraic.dist-0.9.1/algebraic.dist/man/vcov.edist.Rd | 9 algebraic.dist-0.9.1/algebraic.dist/man/vcov.empirical_dist.Rd | 10 algebraic.dist-0.9.1/algebraic.dist/man/vcov.exponential.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/vcov.gamma_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.lognormal.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.mixture.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.mvn.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/vcov.normal.Rd | 4 algebraic.dist-0.9.1/algebraic.dist/man/vcov.poisson_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.uniform_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/vcov.univariate_dist.Rd | 7 algebraic.dist-0.9.1/algebraic.dist/man/vcov.weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/man/weibull_dist.Rd |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-algebra-extended.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-beta_dist.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-chi_squared.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-countable_set.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-edist.R | 24 algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-exponential.R | 2 algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-gamma_dist.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-limits.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-lognormal.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-mixture.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-mvn-algebra.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-mvn.R | 4 algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-normal.R | 4 algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-poisson_dist.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-realize.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-support.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-uniform_dist.R |only algebraic.dist-0.9.1/algebraic.dist/tests/testthat/test-weibull_dist.R |only algebraic.dist-0.9.1/algebraic.dist/vignettes/algebra.Rmd |only algebraic.dist-0.9.1/algebraic.dist/vignettes/multivariate.Rmd |only 317 files changed, 2964 insertions(+), 470 deletions(-)
More information about algebraic.dist at CRAN
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Title: Shared Tools for Tracking Data
Description: A collection of commonly used tools for animal movement and other tracking
data. Variously distance, angle, bearing, distance-to, bearing-to and speed are
provided for geographic data that can be used directly or within 'tidyverse'
syntax. Distances and bearings are calculated using modern geodesic methods as
provided by Charles F. F. Karney (2013) <doi:10.1007/s00190-012-0578-z>
via the 'geographiclib' package.
Author: Michael Sumner [aut, cre]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between traipse versions 0.3.0 dated 2022-10-10 and 0.4.0 dated 2026-02-27
DESCRIPTION | 19 + MD5 | 42 ++-- NAMESPACE | 2 NEWS.md | 13 + R/track_angle.R | 5 R/track_bearing.R | 8 R/track_bearing_to.R | 2 R/track_intermediate.R | 16 + R/track_query.R | 2 R/track_turn.R | 7 README.md | 193 ++++++++++---------- build/partial.rdb |binary man/figures/README-example-group_by-1.png |binary man/figures/README-example-group_by-2.png |binary man/figures/README-example-group_by-3.png |binary man/figures/README-intermediate-1.png |binary man/figures/README-intermediate-2.png |binary man/track_intermediate.Rd | 4 man/traipse-package.Rd | 6 tests/testthat/test-bearing_to.R | 6 tests/testthat/test-geosphere-migration.R |only tests/testthat/test-intermediates.R | 6 tests/testthat/test-traipse-geosphere-equivalence.R |only 23 files changed, 183 insertions(+), 148 deletions(-)
Title: Fast and Efficient (Automated) Analysis of Sparse Omics Data
Description: A generalised data structure for fast and efficient loading and data munching of sparse omics data. The 'OmicFlow' requires an up-front validated metadata template from the user,
which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an 'omics' class.
Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated 'autoFlow' method to generate a comprehensive report.
Author: Alem Gusinac [aut, cre] ,
Thomas Ederveen [aut] ,
Annemarie Boleij [aut, fnd]
Maintainer: Alem Gusinac <alem.gusinac@gmail.com>
Diff between OmicFlow versions 1.5.0 dated 2026-01-26 and 1.5.1 dated 2026-02-27
OmicFlow-1.5.0/OmicFlow/tests/testthat/_snaps/utils.md |only OmicFlow-1.5.1/OmicFlow/DESCRIPTION | 8 OmicFlow-1.5.1/OmicFlow/MD5 | 80 +- OmicFlow-1.5.1/OmicFlow/NAMESPACE | 4 OmicFlow-1.5.1/OmicFlow/R/colormap.R | 12 OmicFlow-1.5.1/OmicFlow/R/composition_plot.R | 5 OmicFlow-1.5.1/OmicFlow/R/diversity_plot.R | 316 +++++----- OmicFlow-1.5.1/OmicFlow/R/foldchange.R | 83 -- OmicFlow-1.5.1/OmicFlow/R/hill_taxa.R | 5 OmicFlow-1.5.1/OmicFlow/R/metagenomics-class.R | 5 OmicFlow-1.5.1/OmicFlow/R/omics-class.R | 92 +- OmicFlow-1.5.1/OmicFlow/R/ordination_plot.R | 29 OmicFlow-1.5.1/OmicFlow/R/pairwise_adonis.R | 14 OmicFlow-1.5.1/OmicFlow/R/pairwise_anosim.R | 18 OmicFlow-1.5.1/OmicFlow/R/plot_pairwise_stats.R | 7 OmicFlow-1.5.1/OmicFlow/R/utils.R | 5 OmicFlow-1.5.1/OmicFlow/man/diversity_plot.Rd | 16 OmicFlow-1.5.1/OmicFlow/man/foldchange.Rd | 219 ++---- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/alpha_diversity.md | 156 ++-- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/composition.md | 138 ++-- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/dfe.md | 126 +-- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/distances.md | 252 +++---- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/hill.md | 84 +- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/metagenomics.md | 11 OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/omics.md | 88 +- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/proteomics.md | 13 OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/subsetting.md | 96 +-- OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/sync.md | 44 - OmicFlow-1.5.1/OmicFlow/tests/testthat/_snaps/transformations.md | 48 - OmicFlow-1.5.1/OmicFlow/tests/testthat/input/metagenomics/biom_with_taxonomy_json.biom | 43 + OmicFlow-1.5.1/OmicFlow/tests/testthat/input/proteomics/counts_without_rownames.csv |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-alpha_diversity.R | 13 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-colormap.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-composition.R | 14 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-distances.R | 30 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-diversity.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-diversity_plot.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-hill.R | 2 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-metagenomics.R | 20 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-ordination_plot.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-pairwise_stats.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-plot_pairwise_stats.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-proteomics.R | 29 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-rankstat.R |only OmicFlow-1.5.1/OmicFlow/tests/testthat/test-utils.R | 31 OmicFlow-1.5.1/OmicFlow/tests/testthat/test-volcano_plot.R |only 46 files changed, 1169 insertions(+), 987 deletions(-)
Title: Collection of Functions for Working with Age Intervals
Description: Provides a collection of efficient functions for working with
individual ages and corresponding intervals. These include functions for
conversion from an age to an interval, aggregation of ages with associated
counts in to intervals and the splitting of interval counts based on
specified age distributions.
Author: Tim Taylor [aut, cre, cph] ,
Edwin van Leeuwen [aut]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between ageutils versions 0.1.1 dated 2025-10-13 and 0.1.2 dated 2026-02-27
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/ageutils.Rmd | 6 ++++-- inst/doc/ageutils.html | 49 +++++++++++++++++++++++++++++++++++++------------ vignettes/ageutils.Rmd | 6 ++++-- vignettes/assets |only 8 files changed, 60 insertions(+), 26 deletions(-)
Title: Generate and Translate Standard UUIDs
Description: Generate and translate standard Universally Unique Identifiers (UUIDs) into shorter - or just different - formats and back. Also implements base58 encoders and decoders.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between shortuuid versions 0.1.0 dated 2025-07-22 and 0.1.1 dated 2026-02-27
DESCRIPTION | 6 +-- MD5 | 10 ++--- NEWS.md | 4 ++ src/RcppExports.cpp | 4 +- src/base58.cpp | 87 ++++++++++++++++++++-------------------------------- src/uuid.h | 16 +++++---- 6 files changed, 58 insertions(+), 69 deletions(-)
Title: Flexible Bayesian Optimization
Description: A modern and flexible approach to Bayesian Optimization / Model
Based Optimization building on the 'bbotk' package. 'mlr3mbo' is a toolbox
providing both ready-to-use optimization algorithms as well as their fundamental
building blocks allowing for straightforward implementation of custom
algorithms. Single- and multi-objective optimization is supported as well as
mixed continuous, categorical and conditional search spaces. Moreover, using
'mlr3mbo' for hyperparameter optimization of machine learning models within the
'mlr3' ecosystem is straightforward via 'mlr3tuning'. Examples of ready-to-use
optimization algorithms include Efficient Global Optimization by Jones et al.
(1998) <doi:10.1023/A:1008306431147>, ParEGO by Knowles (2006)
<doi:10.1109/TEVC.2005.851274> and SMS-EGO by Ponweiser et al. (2008)
<doi:10.1007/978-3-540-87700-4_78>.
Author: Marc Becker [cre, aut] ,
Lennart Schneider [aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Florian Pfisterer [aut] ,
Martin Binder [aut],
Sebastian Fischer [aut] ,
Michael H. Buselli [cph],
Wessel Dankers [cph],
Carlos Fonseca [...truncated...]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3mbo versions 0.3.3 dated 2025-10-10 and 1.0.0 dated 2026-02-27
DESCRIPTION | 30 ++-- MD5 | 116 +++++++++------- NAMESPACE | 9 + NEWS.md | 6 R/AcqOptimizer.R | 8 - R/AcqOptimizerDirect.R |only R/AcqOptimizerLbfgsb.R |only R/AcqOptimizerLocalSearch.R |only R/AcqOptimzerRandomSearch.R |only R/OptimizerAsyncMbo.R | 19 +- R/OptimizerMbo.R | 19 ++ R/Surrogate.R | 10 - R/SurrogateLearner.R | 54 ++++--- R/bayesopt_ego.R | 12 + R/bayesopt_emo.R | 9 - R/bayesopt_mpcl.R | 11 + R/bayesopt_parego.R | 9 - R/bayesopt_smsego.R | 9 - R/conditions.R |only R/mbo_defaults.R | 161 +++++++++-------------- R/mlr_acqoptimizers.R |only R/sugar.R | 12 + build/partial.rdb |binary man/AcqOptimizerDirect.Rd |only man/AcqOptimizerLbfgsb.Rd |only man/AcqOptimizerLocalSearch.Rd |only man/AcqOptimizerRandomSearch.Rd |only man/acqo.Rd | 7 - man/default_acqfunction.Rd | 3 man/default_acqoptimizer.Rd | 6 man/default_gp.Rd | 18 +- man/default_rf.Rd | 12 - man/default_surrogate.Rd | 35 +---- man/mbo_defaults.Rd | 3 man/mlr3mbo-package.Rd | 4 man/mlr3mbo_conditions.Rd |only man/mlr_acqfunctions.Rd | 1 man/mlr_acqoptimizers.Rd |only man/mlr_input_trafos.Rd | 1 man/mlr_loop_functions.Rd | 1 man/mlr_optimizers_async_mbo.Rd | 16 ++ man/mlr_optimizers_mbo.Rd | 16 ++ man/mlr_output_trafos.Rd | 1 man/mlr_result_assigners.Rd | 1 tests/testthat/_snaps |only tests/testthat/helper.R | 10 + tests/testthat/test_AcqFunctionMulti.R | 2 tests/testthat/test_AcqFunctionStochasticCB.R | 34 +++- tests/testthat/test_AcqFunctionStochasticEI.R | 21 ++- tests/testthat/test_AcqOptimizer.R | 118 ++++++++-------- tests/testthat/test_AcqOptimizerDirect.R |only tests/testthat/test_AcqOptimizerLbfgsb.R |only tests/testthat/test_AcqOptimizerLocalSearch.R |only tests/testthat/test_AcqOptimizerRandomSearch.R |only tests/testthat/test_InputTrafoUnitcube.R | 5 tests/testthat/test_OptimizerAsyncMbo.R | 2 tests/testthat/test_OptimizerMbo.R | 10 + tests/testthat/test_OutputTrafoLog.R | 6 tests/testthat/test_OutputTrafoStandardize.R | 5 tests/testthat/test_ResultAssignerArchive.R | 4 tests/testthat/test_ResultAssignerSurrogate.R | 6 tests/testthat/test_SurrogateLearner.R | 14 +- tests/testthat/test_SurrogateLearnerCollection.R | 8 - tests/testthat/test_TunerAsyncMbo.R | 2 tests/testthat/test_TunerMbo.R | 6 tests/testthat/test_bayesopt_ego.R | 122 ++++++++--------- tests/testthat/test_conditions.R |only tests/testthat/test_mbo_defaults.R | 128 ++++++++++++------ 68 files changed, 648 insertions(+), 474 deletions(-)
Title: Access to 'GeographicLib'
Description: Bindings to the 'GeographicLib' C++ library
<https://geographiclib.sourceforge.io/> for precise geodetic calculations
including geodesic computations (distance, bearing, paths, intersections),
map projections (UTM/UPS, Transverse Mercator, Lambert Conformal Conic,
and more), grid reference systems (MGRS, Geohash, GARS, Georef),
coordinate conversions (geocentric, local Cartesian), and polygon area
on the WGS84 ellipsoid. All functions are fully vectorized.
Author: Michael Sumner [cre, aut],
Charles Karney [cph, aut] ,
Mark Borgerding [cph] )
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between geographiclib versions 0.4.0 dated 2026-02-25 and 0.4.1 dated 2026-02-27
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 7 +++++++ inst/doc/geographiclib-overview.html | 6 +++--- src/000_polygonarea_geographiclib.cpp | 6 ++++-- src/GeographicLib/Trigfun.hpp | 1 + 6 files changed, 23 insertions(+), 13 deletions(-)
Title: Quantifying Similarity of Datasets and Multivariate Two- And
k-Sample Testing
Description: A collection of methods for quantifying the similarity of two or more datasets, many of which can be used for two- or k-sample testing. It provides newly implemented methods as well as wrapper functions for existing methods that enable calling many different methods in a unified framework. The methods were selected from the review and comparison of Stolte et al. (2024) <doi:10.1214/24-SS149>. An empirical comparison of the methods for categorical data was performed in Stolte et al. (2025) <doi:10.17877/DE290R-25572>.
Author: Marieke Stolte [aut, cre, cph] ,
Luca Sauer [aut] ,
David Alvarez-Melis [ctb] ,
Nabarun Deb [ctb] , <https://github.com/NabarunD/MultiDistFree.git>),
Bodhisattva Sen [ctb] , <https://github.com/NabarunD/MultiDistFree.git>)
Maintainer: Marieke Stolte <stolte@statistik.tu-dortmund.de>
Diff between DataSimilarity versions 0.2.0 dated 2025-06-16 and 0.3.0 dated 2026-02-27
ChangeLog | 27 DESCRIPTION | 10 MD5 | 106 NAMESPACE | 2 R/BF.R | 2 R/CCS.R | 12 R/CF.R | 12 R/FR.R | 12 R/GGRL.R | 2 R/NKT.R | 2 R/SH.R | 2 R/ZC.R | 12 R/gTests.R | 14 R/helper_functions_density_based_methods.R | 32 R/helper_functions_gTests.R | 16 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Details.pdf |binary inst/doc/GettingStarted.pdf |binary man/BF.Rd | 4 man/C2ST.Rd | 10 man/CCS.Rd | 10 man/CCS_cat.Rd | 13 man/CF.Rd | 10 man/CF_cat.Rd | 13 man/FR.Rd | 10 man/FR_cat.Rd | 13 man/GGRL.Rd | 7 man/MST.Rd | 5 man/NKT.Rd | 13 man/SH.Rd | 7 man/ZC.Rd | 10 man/ZC_cat.Rd | 13 man/dipro.fun.Rd | 8 man/gTests.Rd | 4 man/gTests_cat.Rd | 12 tests/testthat/test-BG.R | 2 tests/testthat/test-BG2.R | 2 tests/testthat/test-BQS.R | 2 tests/testthat/test-BallDivergence.R | 2 tests/testthat/test-C2ST.R | 2 tests/testthat/test-CMDistance.R | 2 tests/testthat/test-Energy_DISCO.R | 6 tests/testthat/test-FR_CF_CCS_ZC.R | 26 tests/testthat/test-GPK.R | 2 tests/testthat/test-KMD.R | 2 tests/testthat/test-MMCM.R | 2 tests/testthat/test-NKT_GGRL.R | 2 tests/testthat/test-Petrie.R | 2 tests/testthat/test-Rosenbaum.R | 2 tests/testthat/test-SH.R | 2 tests/testthat/test-Wasserstein.R | 2 tests/testthat/test-engineerMetric.R | 2 vignettes/refs.bib | 9628 ++++++++++++++--------------- 54 files changed, 5116 insertions(+), 4999 deletions(-)
More information about DataSimilarity at CRAN
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Title: Spatially Aware Cell-Cell Interaction Analysis
Description: Provides tools for analyzing spatial cell-cell interactions based on ligand-receptor pairs, including functions for local, regional, and global analysis using spatial transcriptomics data. Integrates with databases like 'CellChat' <https://github.com/jinworks/CellChat>, 'CellPhoneDB' <https://www.cellphonedb.org/>, 'Cellinker' <https://www.rna-society.org/cellinker/>, 'ICELLNET' <https://github.com/soumelis-lab/ICELLNET>, and 'ConnectomeDB' <https://humanconnectome.org/software/connectomedb/> to identify ligand-receptor pairs, visualize interactions through heatmaps, chord diagrams, and infer interactions on different spatial scales.
Author: Li-Ting Ku [aut, cre]
Maintainer: Li-Ting Ku <lku@mdanderson.org>
Diff between SpaCCI versions 1.0.4 dated 2025-05-12 and 1.0.5 dated 2026-02-27
SpaCCI-1.0.4/SpaCCI/R/DB_dataframe.R |only SpaCCI-1.0.4/SpaCCI/data/DB_dataframe.rda |only SpaCCI-1.0.4/SpaCCI/man/DB_dataframe.Rd |only SpaCCI-1.0.4/SpaCCI/man/self_identified_LR.Rd |only SpaCCI-1.0.5/SpaCCI/DESCRIPTION | 14 ++-- SpaCCI-1.0.5/SpaCCI/MD5 | 23 ++---- SpaCCI-1.0.5/SpaCCI/NAMESPACE | 3 SpaCCI-1.0.5/SpaCCI/R/database.R | 89 -------------------------- SpaCCI-1.0.5/SpaCCI/R/modeling.R | 37 ++++++---- SpaCCI-1.0.5/SpaCCI/R/run_SpaCCI.R | 4 - SpaCCI-1.0.5/SpaCCI/R/tutorial_example_data.R |only SpaCCI-1.0.5/SpaCCI/R/visiualization.R | 8 +- SpaCCI-1.0.5/SpaCCI/man/Find_regional_IDs.Rd | 4 - SpaCCI-1.0.5/SpaCCI/man/LR_database.Rd | 2 SpaCCI-1.0.5/SpaCCI/man/run_SpaCCI.Rd | 4 - 15 files changed, 54 insertions(+), 134 deletions(-)
Title: 3D Radial Visualization
Description: Creating 3D radial visualizations of multivariate data.
The package extends traditional radial coordinate visualization (RadViz) techniques
to three-dimensional space, enabling enhanced exploration and analysis of
high-dimensional datasets through interactive 3D plots. Zhu, Dai & Maitra (2022)
<doi:10.1080/10618600.2021.2020129>.
Author: Yifan Zhu [cre, aut],
Fan Dai [aut, ctb],
Ranjan Maitra [aut, ctb],
Niraj Kunwar [aut, ctb],
Gani Agadilov [aut, ctb]
Maintainer: Yifan Zhu <fannechu@gmail.com>
Diff between radviz3d versions 2.3.0 dated 2025-09-30 and 2.3.1 dated 2026-02-27
DESCRIPTION | 26 +++++++++++++------------- MD5 | 4 ++-- R/radviz3d.R | 10 +++++----- 3 files changed, 20 insertions(+), 20 deletions(-)
Title: Check Threatened Plant Species Status Against Peru's Supreme
Decree 043-2006-AG
Description: Provides tools to match plant species names against the official
threatened species list of Peru (Supreme Decree 043-2006-AG, 2006).
Implements a hierarchical matching pipeline with exact, fuzzy, and suffix
matching algorithms to handle naming variations and taxonomic changes.
Supports both the original 2006 nomenclature and updated taxonomic names,
allowing users to check protection status regardless of nomenclatural changes
since the decree's publication. Threat categories follow International Union for Conservation of Nature standards
(Critically Endangered, Endangered, Vulnerable, Near Threatened).
Author: Paul E. Santos Andrade [aut, cre]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
This is a re-admission after prior archival of version 0.2.2 dated 2025-11-24
Diff between peruflorads43 versions 0.2.2 dated 2025-11-24 and 0.2.3 dated 2026-02-27
DESCRIPTION | 6 MD5 | 22 - R/api_match.R | 114 ++--- R/fuzzy_match.R | 3 R/internal.R | 127 +++--- R/matching-pipeline.R | 11 R/threated_match.R | 58 -- inst/doc/threatenedperu_overview.html | 558 ++++++++++++++-------------- man/figures/logo.png |binary tests/testthat/test-consolidated-matching.R | 41 ++ tests/testthat/test-database-integrity.R | 4 tests/testthat/test-integration.R | 7 12 files changed, 481 insertions(+), 470 deletions(-)
Title: Network-Guided Penalized Regression (NetGreg)
Description: A network-guided penalized regression framework that integrates network characteristics from Gaussian graphical models with partial penalization, accounting for both network structure (hubs and non-hubs) and clinical covariates in high-dimensional omics data, including transcriptomics and proteomics. The full methodological details can be found in our publication by Ahn S and Oh EJ (2026) <doi:10.1093/bioadv/vbag038>.
Author: Seungjun Ahn [cre, aut] ,
Eun Jeong Oh [aut]
Maintainer: Seungjun Ahn <seungjun.ahn@mountsinai.org>
This is a re-admission after prior archival of version 0.0.2 dated 2025-06-03
Diff between NetGreg versions 0.0.2 dated 2025-06-03 and 0.0.4 dated 2026-02-27
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Fitting Generalized Linear Models Subject to Constraints
Description: Fits generalized linear models where the parameters are subject to linear constraints. The model is specified by giving a symbolic description of the linear predictor, a description of the error distribution, and a matrix of constraints on the parameters.
Author: Sanjay Chaudhuri [aut, cre],
Mark S. Handcock [aut],
Michael S. Rendall [ctb]
Maintainer: Sanjay Chaudhuri <schaudhuri2@unl.edu>
This is a re-admission after prior archival of version 0.3-1 dated 2018-12-12
Diff between glmc versions 0.3-1 dated 2018-12-12 and 0.4-1 dated 2026-02-27
DESCRIPTION | 32 +++++++++++++++++++++----------- MD5 | 10 +++++----- inst/CITATION | 36 ++++++++++++++++-------------------- man/glmc.Rd | 4 ++-- man/glmc.control.Rd | 4 ++-- man/glmc.summaries.Rd | 2 +- 6 files changed, 47 insertions(+), 41 deletions(-)
Title: Friendly Input-Output Analysis
Description: Simplifies the process of economic input-output analysis by combining
user-friendly interfaces with high-performance computation. It provides tools
for analyzing both single-region and multi-regional economic systems through a
hybrid architecture that pairs R's accessibility with Rust's computational efficiency.
Author: Alberson da Silva Miranda [aut, cre, cph] ,
Celso Bissoli Sessa [dtc]
Maintainer: Alberson da Silva Miranda <albersonmiranda@hotmail.com>
Diff between fio versions 0.1.6 dated 2025-04-06 and 1.0.0 dated 2026-02-27
fio-0.1.6/fio/R/br_2020.R |only fio-0.1.6/fio/data |only fio-0.1.6/fio/inst/extdata |only fio-0.1.6/fio/man/br_2020.Rd |only fio-0.1.6/fio/man/figures/example_leontief_inverse.png |only fio-1.0.0/fio/DESCRIPTION | 33 fio-1.0.0/fio/MD5 | 76 - fio-1.0.0/fio/NAMESPACE | 2 fio-1.0.0/fio/NEWS.md | 18 fio-1.0.0/fio/R/download_wiod.R |only fio-1.0.0/fio/R/extendr-wrappers.R | 127 +- fio-1.0.0/fio/R/helpers.R | 10 fio-1.0.0/fio/R/import_iom.R | 45 fio-1.0.0/fio/R/miom.R |only fio-1.0.0/fio/R/r6.R | 248 +++++ fio-1.0.0/fio/README.md | 289 +++++- fio-1.0.0/fio/build/partial.rdb |binary fio-1.0.0/fio/build/vignette.rds |binary fio-1.0.0/fio/cleanup |only fio-1.0.0/fio/cleanup.win |only fio-1.0.0/fio/inst/doc/getting_started.Rmd | 2 fio-1.0.0/fio/inst/doc/getting_started.html | 184 +-- fio-1.0.0/fio/man/download_wiod.Rd |only fio-1.0.0/fio/man/import_element.Rd | 26 fio-1.0.0/fio/man/iom.Rd | 104 ++ fio-1.0.0/fio/man/miom.Rd |only fio-1.0.0/fio/src/Makevars.in | 16 fio-1.0.0/fio/src/Makevars.win.in | 12 fio-1.0.0/fio/src/rust/Cargo.lock | 791 +++++++++-------- fio-1.0.0/fio/src/rust/Cargo.toml | 19 fio-1.0.0/fio/src/rust/src/extraction.rs | 26 fio-1.0.0/fio/src/rust/src/ghosh.rs | 2 fio-1.0.0/fio/src/rust/src/influence.rs | 2 fio-1.0.0/fio/src/rust/src/leontief.rs | 19 fio-1.0.0/fio/src/rust/src/lib.rs | 81 - fio-1.0.0/fio/src/rust/src/linkages.rs | 68 - fio-1.0.0/fio/src/rust/src/multipliers.rs | 193 ++-- fio-1.0.0/fio/src/rust/src/parallel.rs |only fio-1.0.0/fio/src/rust/vendor-config.toml | 4 fio-1.0.0/fio/src/rust/vendor.tar.xz |binary fio-1.0.0/fio/tests/testthat/_snaps |only fio-1.0.0/fio/tests/testthat/test-computations.R | 5 fio-1.0.0/fio/tests/testthat/test-iom.R | 137 ++ fio-1.0.0/fio/tests/testthat/test-miom.R |only fio-1.0.0/fio/tools/config.R | 45 fio-1.0.0/fio/vignettes/getting_started.Rmd | 2 46 files changed, 1660 insertions(+), 926 deletions(-)
Title: China Map Data from AutoNavi Map
Description: According to the codes and names of county-level and above administrative divisions released in 2022 by the Ministry of Civil Affairs of the People's Republic of China, the online vector map files were retrieved from the website (available at: <http://datav.aliyun.com/portal/school/atlas/area_selector>). This study was supported by the National Natural Science Foundation of China (NSFC, Grant No. 42205177).
Author: Panfeng Zhang [aut, cre]
Maintainer: Panfeng Zhang <zhangpf08@163.com>
Diff between cnmap versions 0.1.1 dated 2025-09-12 and 0.1.2 dated 2026-02-27
DESCRIPTION | 8 MD5 | 16 NEWS.md | 4 build/vignette.rds |binary data/ad.rda |binary inst/doc/Introduction.R | 30 inst/doc/Introduction.Rmd | 66 + inst/doc/Introduction.html | 1867 +++++++++++++++++++++++++++++++++++++-------- vignettes/Introduction.Rmd | 66 + 9 files changed, 1676 insertions(+), 381 deletions(-)
Title: Access and Analysis of Brazilian CNEFE Address Data
Description: Download, cache and read municipality-level address data from the
Cadastro Nacional de Enderecos para Fins Estatisticos (CNEFE) of the 2022
Brazilian Census, published by the Instituto Brasileiro de Geografia e
Estatistica (IBGE)
<https://ftp.ibge.gov.br/Cadastro_Nacional_de_Enderecos_para_Fins_Estatisticos/>.
Beyond data access, provides spatial aggregation of addresses, computation
of land-use mix indices, and dasymetric interpolation of census tract
variables using CNEFE dwelling points as ancillary data. Results can be
produced on 'H3' hexagonal grids or user-supplied polygons, and heavy
operations leverage a 'DuckDB' backend with extensions for fast,
in-process execution.
Author: Jorge Ubirajara Pedreira Junior [aut, cre, cph] ,
Bruno Mioto [aut],
Kaio Cunha Pedreira [ctb]
Maintainer: Jorge Ubirajara Pedreira Junior <jorge.ubirajara@ufba.br>
This is a re-admission after prior archival of version 0.2.1 dated 2026-02-13
Diff between cnefetools versions 0.2.1 dated 2026-02-13 and 0.2.2 dated 2026-02-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 12 ++++++++++++ README.md | 4 ++++ 4 files changed, 22 insertions(+), 6 deletions(-)
Title: Case Based Reasoning
Description: Case-based reasoning is a problem-solving methodology that involves solving a new problem by referring to the solution of a similar problem in a large set of previously solved problems. The key aspect of Case Based Reasoning is to determine the problem that "most closely" matches the new problem at hand. This is achieved by defining a family of distance functions and using these distance functions as parameters for local averaging regression estimates of the final result. The optimal distance function is chosen based on a specific error measure used in regression estimation. This approach allows for efficient problem-solving by leveraging past experiences and adapting solutions from similar cases. The underlying concept is inspired by the work of Dippon J. et al. (2002) <doi:10.1016/S0167-9473(02)00058-0>.
Author: Simon Mueller [aut, cre],
PD Dr. Juergen Dippon [ctb]
Maintainer: Simon Mueller <simon.mueller@muon-stat.com>
Diff between CaseBasedReasoning versions 0.4 dated 2026-02-26 and 0.4.1 dated 2026-02-27
CaseBasedReasoning-0.4.1/CaseBasedReasoning/DESCRIPTION | 12 CaseBasedReasoning-0.4.1/CaseBasedReasoning/LICENSE | 2 CaseBasedReasoning-0.4.1/CaseBasedReasoning/MD5 | 39 - CaseBasedReasoning-0.4.1/CaseBasedReasoning/NEWS.md | 26 CaseBasedReasoning-0.4.1/CaseBasedReasoning/R/distance.R | 8 CaseBasedReasoning-0.4.1/CaseBasedReasoning/R/pkgsExports.R | 1 CaseBasedReasoning-0.4.1/CaseBasedReasoning/inst/doc/distance_measures.html | 68 - CaseBasedReasoning-0.4.1/CaseBasedReasoning/inst/doc/distance_measures.rmd | 43 - CaseBasedReasoning-0.4.1/CaseBasedReasoning/inst/doc/get_started.R | 19 CaseBasedReasoning-0.4.1/CaseBasedReasoning/inst/doc/get_started.html | 373 ++-------- CaseBasedReasoning-0.4.1/CaseBasedReasoning/inst/doc/get_started.rmd | 113 --- CaseBasedReasoning-0.4.1/CaseBasedReasoning/man/depth_distance.Rd | 2 CaseBasedReasoning-0.4.1/CaseBasedReasoning/man/edges_between_terminal_nodes.Rd | 2 CaseBasedReasoning-0.4.1/CaseBasedReasoning/man/proximity_distance.Rd | 2 CaseBasedReasoning-0.4.1/CaseBasedReasoning/man/weighted_distance.Rd | 2 CaseBasedReasoning-0.4.1/CaseBasedReasoning/src/ranger/RangerForestNodeDistance.h | 4 CaseBasedReasoning-0.4.1/CaseBasedReasoning/src/ranger/rangerForest.h | 4 CaseBasedReasoning-0.4.1/CaseBasedReasoning/tests/testthat/test-RFDistance.R | 33 CaseBasedReasoning-0.4.1/CaseBasedReasoning/vignettes/distance_measures.rmd | 43 - CaseBasedReasoning-0.4.1/CaseBasedReasoning/vignettes/get_started.rmd | 113 --- CaseBasedReasoning-0.4/CaseBasedReasoning/README.md |only 21 files changed, 288 insertions(+), 621 deletions(-)
More information about CaseBasedReasoning at CRAN
Permanent link
Title: Provide the 'x13ashtml' Seasonal Adjustment Binary
Description: The US Census Bureau provides a seasonal adjustment program now
called 'X-13ARIMA-SEATS' building on both earlier programs called X-11 and
X-12 as well as the SEATS program by the Bank of Spain. The US Census Bureau
offers both source and binary versions -- which this package integrates for
use by other R packages.
Author: Dirk Eddelbuettel [aut, cre] ,
Christoph Sax [aut] ,
Kirill Mueller [ctb] ,
Jeroen Ooms [ctb] ,
Michael Antonov [ctb]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between x13binary versions 1.1.61.1 dated 2025-08-20 and 1.1.61.2 dated 2026-02-27
ChangeLog | 16 ++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/Makefile | 4 +++- src/Makefile.win | 3 ++- 5 files changed, 29 insertions(+), 10 deletions(-)
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 3.0.15 dated 2026-02-26 and 3.0.17 dated 2026-02-27
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++-- inst/CITATION | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Run Predictions Inside the Database
Description: It parses a fitted 'R' model object, and returns a formula in
'Tidy Eval' code that calculates the predictions. It works with
several databases back-ends because it leverages 'dplyr' and 'dbplyr'
for the final 'SQL' translation of the algorithm. It currently
supports lm(), glm(), randomForest(), ranger(), rpart(), earth(),
xgb.Booster.complete(), lgb.Booster(), catboost.Model(), cubist(), and
ctree() models.
Author: Emil Hvitfeldt [aut, cre],
Edgar Ruiz [aut],
Max Kuhn [aut]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between tidypredict versions 1.0.1 dated 2025-12-13 and 1.1.0 dated 2026-02-27
DESCRIPTION | 20 MD5 | 169 ++- NAMESPACE | 26 NEWS.md | 56 + R/acceptable.R | 2 R/misc.R | 22 R/model-catboost.R |only R/model-cubist.R | 39 R/model-earth.R | 45 R/model-glmnet.R | 105 + R/model-lightgbm.R |only R/model-lm.R | 32 R/model-partykit.R | 271 ++-- R/model-ranger.R | 377 +++++- R/model-rf.R | 337 ++++-- R/model-rpart.R |only R/model-xgboost.R | 429 +++++-- R/parsemodel.R | 51 R/predict-fit.R | 44 R/tidymodels.R | 6 R/tidypredict_test.R | 388 +++++-- R/tree-nested.R |only R/tree.R | 101 + README.md | 27 build/vignette.rds |binary inst/doc/catboost.R |only inst/doc/catboost.Rmd |only inst/doc/catboost.html |only inst/doc/cubist.Rmd | 5 inst/doc/cubist.html | 10 inst/doc/float-precision.Rmd |only inst/doc/float-precision.html |only inst/doc/lightgbm.R |only inst/doc/lightgbm.Rmd |only inst/doc/lightgbm.html |only inst/doc/ranger.html | 47 inst/doc/rf.html | 157 +- inst/doc/rpart.R |only inst/doc/rpart.Rmd |only inst/doc/rpart.html |only inst/doc/sql.html | 4 inst/doc/tree-internals.R |only inst/doc/tree-internals.Rmd |only inst/doc/tree-internals.html |only inst/doc/xgboost.Rmd | 2 inst/doc/xgboost.html | 253 ++-- man/build_nested_node.Rd |only man/build_nested_split_condition.Rd |only man/dot-build_case_when_tree.Rd |only man/dot-build_linear_pred.Rd |only man/dot-build_nested_case_when_tree.Rd |only man/dot-extract_catboost_trees.Rd |only man/dot-extract_earth_multiclass.Rd |only man/dot-extract_glmnet_multiclass.Rd |only man/dot-extract_lgb_trees.Rd |only man/dot-extract_partykit_classprob.Rd | 3 man/dot-extract_ranger_classprob.Rd |only man/dot-extract_ranger_trees.Rd |only man/dot-extract_rf_classprob.Rd |only man/dot-extract_rf_trees.Rd |only man/dot-extract_rpart_classprob.Rd |only man/dot-extract_xgb_trees.Rd | 3 man/dot-partykit_tree_info_full.Rd |only man/dot-rpart_tree_info_full.Rd |only man/generate_nested_case_when_tree.Rd |only man/parse_model.Rd | 57 - man/set_catboost_categories.Rd |only man/tidypredict-package.Rd | 2 tests/testthat/_snaps/3.1.3.1 |only tests/testthat/_snaps/3.2.0.1 |only tests/testthat/_snaps/model-catboost.md |only tests/testthat/_snaps/model-earth.md | 26 tests/testthat/_snaps/model-glm.md | 8 tests/testthat/_snaps/model-glmnet.md | 35 tests/testthat/_snaps/model-lightgbm.md |only tests/testthat/_snaps/model-partykit.md | 10 tests/testthat/_snaps/model-ranger.md | 66 + tests/testthat/_snaps/model-rf.md | 66 + tests/testthat/_snaps/model-rpart.md |only tests/testthat/_snaps/model-xgboost.md | 150 -- tests/testthat/_snaps/predict-interval.md |only tests/testthat/_snaps/tidypredict_test.md |only tests/testthat/_snaps/tree.md | 4 tests/testthat/backwards-compat |only tests/testthat/test-acceptable.R | 22 tests/testthat/test-model-catboost.R |only tests/testthat/test-model-earth.R | 160 ++ tests/testthat/test-model-glm.R | 14 tests/testthat/test-model-glmnet.R | 239 ++++ tests/testthat/test-model-lightgbm.R |only tests/testthat/test-model-lm.R | 89 + tests/testthat/test-model-partykit.R | 134 ++ tests/testthat/test-model-ranger.R | 549 +++++++++ tests/testthat/test-model-rf.R | 246 ++++ tests/testthat/test-model-rpart.R |only tests/testthat/test-model-xgboost.R | 1661 +++++++++++++++++++++++++----- tests/testthat/test-predict-fit.R |only tests/testthat/test-predict-interval.R |only tests/testthat/test-tidypredict_test.R | 186 +++ tests/testthat/test-tree-nested.R |only tests/testthat/test-tree.R | 105 + vignettes/catboost.Rmd |only vignettes/cubist.Rmd | 5 vignettes/float-precision.Rmd |only vignettes/lightgbm.Rmd |only vignettes/rpart.Rmd |only vignettes/tree-internals.Rmd |only vignettes/xgboost.Rmd | 2 108 files changed, 5588 insertions(+), 1279 deletions(-)
Title: Parametric Time to Event Analysis
Description: Performs maximum likelihood based estimation and inference on time to event data, possibly subject to non-informative right censoring. FitParaSurv() provides maximum likelihood estimates of model parameters and distributional characteristics, including the mean, median, variance, and restricted mean. CompParaSurv() compares the mean, median, and restricted mean survival experiences of two treatment groups. Candidate distributions include the exponential, gamma, generalized gamma, log-normal, and Weibull.
Author: Zachary McCaw [aut, cre]
Maintainer: Zachary McCaw <zmccaw@alumni.harvard.edu>
Diff between Temporal versions 0.3.0.1 dated 2023-09-23 and 0.3.0.2 dated 2026-02-27
Temporal-0.3.0.1/Temporal/vignettes/Temporal_cache |only Temporal-0.3.0.2/Temporal/DESCRIPTION | 18 + Temporal-0.3.0.2/Temporal/MD5 | 95 +++------- Temporal-0.3.0.2/Temporal/R/Class.R | 30 ++- Temporal-0.3.0.2/Temporal/R/Comparison.R | 2 Temporal-0.3.0.2/Temporal/R/DataGen.R | 2 Temporal-0.3.0.2/Temporal/R/Exponential.R | 23 -- Temporal-0.3.0.2/Temporal/R/Fitting.R | 2 Temporal-0.3.0.2/Temporal/R/Gamma.R | 29 --- Temporal-0.3.0.2/Temporal/R/GenGamma.R | 30 --- Temporal-0.3.0.2/Temporal/R/Inputs.R | 42 ++-- Temporal-0.3.0.2/Temporal/R/LogLik.R | 2 Temporal-0.3.0.2/Temporal/R/LogNormal.R | 35 --- Temporal-0.3.0.2/Temporal/R/NewtonRaphson.R | 2 Temporal-0.3.0.2/Temporal/R/RMST.R | 34 --- Temporal-0.3.0.2/Temporal/R/SurvFunctions.R | 2 Temporal-0.3.0.2/Temporal/R/Temporal-package.R | 10 + Temporal-0.3.0.2/Temporal/R/Weibull.R | 41 ---- Temporal-0.3.0.2/Temporal/build/vignette.rds |binary Temporal-0.3.0.2/Temporal/inst/doc/Temporal.R | 18 - Temporal-0.3.0.2/Temporal/inst/doc/Temporal.Rmd | 14 - Temporal-0.3.0.2/Temporal/man/CheckInfoPD.Rd |only Temporal-0.3.0.2/Temporal/man/DefaultParam.Rd | 2 Temporal-0.3.0.2/Temporal/man/FitParaSurv.Rd | 2 Temporal-0.3.0.2/Temporal/man/GenData.Rd | 2 Temporal-0.3.0.2/Temporal/man/GenGammaShape.Rd | 2 Temporal-0.3.0.2/Temporal/man/SurvFunc.Rd | 2 Temporal-0.3.0.2/Temporal/man/Temporal-package.Rd | 17 + Temporal-0.3.0.2/Temporal/tests/testthat/test-comparison.R | 20 +- Temporal-0.3.0.2/Temporal/tests/testthat/test-exponential.R |only Temporal-0.3.0.2/Temporal/tests/testthat/test-gendata.R |only Temporal-0.3.0.2/Temporal/tests/testthat/test-inputs.R | 95 +++++----- Temporal-0.3.0.2/Temporal/tests/testthat/test-parameter-recovery.R |only Temporal-0.3.0.2/Temporal/tests/testthat/test-weibull.R | 3 Temporal-0.3.0.2/Temporal/vignettes/Temporal.Rmd | 14 - Temporal-0.3.0.2/Temporal/vignettes/Temporal.html | 81 ++++---- 36 files changed, 307 insertions(+), 364 deletions(-)
Title: Structural Equation Modeling and Confirmatory Network Analysis
Description: Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.
Author: Sacha Epskamp [aut, cre]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between psychonetrics versions 0.13.2 dated 2025-10-22 and 0.15 dated 2026-02-27
DESCRIPTION | 15 MD5 | 277 +++++---- NAMESPACE | 18 NEWS | 377 ++++++++++++ R/00_codeOrganization.R | 14 R/01_classes.R | 8 R/02_algebrahelpers_checkJacobian.R | 28 R/02_algebrahelpers_expectedmodel.R | 15 R/03_modelformation_adjust_p_values.R | 4 R/03_modelformation_generateParameterTable.R | 4 R/03_modelformation_matrixSetup_delta.R | 6 R/03_modelformation_matrixSetup_lambda.R | 69 -- R/03_modelformation_samplestats_norawts.R | 55 + R/03_modelformation_standardize_input.R |only R/04_generalFit_fitfunction.R | 19 R/04_generalFit_gradient.R | 36 + R/04_generalfit_FisherInformation.R | 12 R/04_generalfit_impliedModel.R | 10 R/04_generalfit_prepareModel.R | 14 R/04_generalfit_proximal_gradient.R |only R/06_ULS_expectedHessian.R | 2 R/06_ULS_fitfunction.R | 2 R/06_ULS_gradient.R | 2 R/06_weightsMatrix.R | 28 R/08_outputHelpers_logo.R | 4 R/09_PenMLestimator_fit_FIML_Gauss.R |only R/09_PenMLestimator_fit_Gauss.R |only R/09_PenMLestimator_fit_Ising.R |only R/09_PenMLestimator_penalty_helpers.R |only R/15_lvm_derivatives.R | 158 +++-- R/15_lvm_identify.R | 5 R/15_lvm_implied.R | 18 R/15_lvm_prepare.R | 11 R/16_var1_implied.R | 1 R/21_Ising_implied.R | 17 R/23_meta_lvm_derivatives.R |only R/23_meta_lvm_implied.R |only R/23_meta_lvm_prepare.R |only R/24_meta_var1_derivatives.R |only R/24_meta_var1_implied.R |only R/24_meta_var1_prepare.R |only R/RcppExports.R | 52 + R/a_models_Ising.R | 28 R/a_models_dlvm1.R | 367 ++++++++++-- R/a_models_lvm.R | 613 +++++++++++++++------ R/a_models_meta_lvm.R |only R/a_models_meta_var1.R |only R/a_models_meta_varcov.R | 43 + R/a_models_ml_lvm.R | 4 R/a_models_ml_tsdlvm1.R | 178 ------ R/a_models_ml_tslvgvar.R | 31 - R/a_models_panelgvar.R | 101 ++- R/a_models_tsdlvm1.R | 93 ++- R/a_models_var1.R | 93 ++- R/a_models_varcov.R | 103 +++ R/b_modelexpansions_addMIs.R | 4 R/b_modelexpansions_addSEs.R | 34 - R/b_modelexpansions_addfit.R | 290 +++++++++ R/b_modelexpansions_identify.R | 5 R/c_runmodel.R | 249 +++++++- R/e_modelmodifications_find_penalized_lambda.R |only R/e_modelmodifications_partialprune.R | 4 R/f_conveneince_setoptimizer.R | 2 R/f_convenience_CIplot.R | 24 R/f_convenience_MIs.R | 6 R/f_convenience_defaultpenalize.R |only R/f_convenience_ergodicity.R | 6 R/f_convenience_parameters.R | 21 R/f_convenience_penalize.R |only R/f_convenience_printMethod.R | 59 +- R/f_convenience_refit.R |only R/f_convenience_write_psychonetrics.R |only R/g_simulations_loop_psychonetrics.R |only build/partial.rdb |binary data/NA2020.RData |only inst |only man/Ising.Rd | 22 man/NA2020.Rd |only man/convenience.Rd | 23 man/dlvm1_family.Rd | 61 +- man/find_penalized_lambda.Rd |only man/loop_psychonetrics.Rd |only man/lvm_family.Rd | 54 + man/meta_lvm.Rd |only man/meta_var1.Rd |only man/meta_varcov.Rd | 23 man/ml_tsdlvm1.Rd | 4 man/penalize.Rd |only man/runmodel.Rd | 18 man/tsdlvm1_family.Rd | 30 - man/var1_family.Rd | 31 - man/varcov_family.Rd | 46 + man/write_psychonetrics.Rd |only src/02_algebragelpers_kronecker.h | 11 src/02_algebrahelpers_kronecker.cpp | 40 + src/03_modelformation_formModelMatrices_direct.cpp |only src/03_modelformation_formModelMatrices_direct.h |only src/04_generalFit_FisherInformation_cpp.cpp | 12 src/04_generalFit_gradient_cpp.cpp | 70 +- src/04_generalFit_implied_and_prepare.h | 3 src/04_generalfit_fitfunction_cpp.cpp | 38 - src/04_generalfit_implied_and_prepare.cpp | 162 +++-- src/04_generalfit_optimWorkspace.cpp |only src/04_generalfit_optimWorkspace.h |only src/04_generalfit_psychonetrics_BFGS.cpp | 3 src/04_generalfit_psychonetrics_LBFGSB.cpp |only src/06_ULS_expectedHessian_cpp.cpp | 2 src/06_ULS_fitfunction_cpp.cpp | 25 src/06_ULS_gradient_cpp.cpp | 25 src/09_PenMLestimator_fit_FIML_Gauss_cpp.cpp |only src/09_PenMLestimator_fit_FIML_Gauss_cpp.h |only src/09_PenMLestimator_fit_Gauss_cpp.cpp |only src/09_PenMLestimator_fit_Gauss_cpp.h |only src/09_PenMLestimator_fit_Ising_cpp.cpp |only src/09_PenMLestimator_fit_Ising_cpp.h |only src/09_PenMLestimator_penalty_helpers_cpp.cpp |only src/09_PenMLestimator_penalty_helpers_cpp.h |only src/14_varcov_implied_cpp.cpp | 49 - src/14_varcov_implied_cpp.h | 7 src/14_varcov_prepare_cpp.cpp | 62 -- src/15_lvm_derivatives_cpp.cpp | 252 +++++--- src/15_lvm_implied_cpp.cpp | 95 ++- src/15_lvm_implied_cpp.h | 7 src/15_lvm_prepare_cpp.cpp | 62 -- src/16_var1_derivatives_cpp.h | 39 + src/16_var1_implied_cpp.cpp | 37 - src/16_var1_implied_cpp.h | 6 src/16_var1_prepare_cpp.cpp | 62 -- src/18_dlvm1_derivatives_cpp.cpp | 134 +++- src/18_dlvm1_implied_cpp.cpp | 42 - src/18_dlvm1_implied_cpp.h | 6 src/18_dlvm1_prepare_cpp.cpp | 62 -- src/19_tsdlvm1_implied_cpp.cpp | 48 - src/19_tsdlvm1_implied_cpp.h | 6 src/19_tsdlvm1_prepare_cpp.cpp | 62 -- src/20_meta_varcov_implied.cpp | 110 +-- src/20_meta_varcov_implied_cpp.h | 6 src/20_meta_varcov_prepare_cpp.cpp | 60 -- src/21_Ising_expectedHessian.cpp | 12 src/21_Ising_implied_cpp.cpp | 78 +- src/21_Ising_implied_cpp.h | 6 src/21_Ising_prepare_cpp.cpp | 57 - src/22_ml_lvm_implied_cpp.cpp | 44 - src/22_ml_lvm_implied_cpp.h | 6 src/22_ml_lvm_prepare_cpp.cpp | 62 -- src/23_meta_lvm_derivatives_cpp.cpp |only src/23_meta_lvm_derivatives_cpp.h |only src/23_meta_lvm_implied.cpp |only src/23_meta_lvm_implied_cpp.h |only src/23_meta_lvm_prepare_cpp.cpp |only src/23_meta_lvm_prepare_cpp.h |only src/24_meta_var1_derivatives_cpp.cpp |only src/24_meta_var1_derivatives_cpp.h |only src/24_meta_var1_implied.cpp |only src/24_meta_var1_implied_cpp.h |only src/24_meta_var1_prepare_cpp.cpp |only src/24_meta_var1_prepare_cpp.h |only src/Makevars | 8 src/Makevars.win | 3 src/RcppExports.cpp | 165 +++++ src/b_modelexpansions_addSEs_cpp.cpp | 62 +- 161 files changed, 4296 insertions(+), 1763 deletions(-)
Title: A General Framework for Latent Classify and Profile Analysis
Description: A unified latent class modeling framework that encompasses both latent class analysis (LCA) and latent profile analysis (LPA), offering a one-stop solution for latent class modeling. It implements state-of-the-art parameter estimation methods, including the expectation–maximization (EM) algorithm, neural network estimation (NNE; requires users to have 'Python' and its dependent libraries installed on their computer), and integration with 'Mplus' (requires users to have 'Mplus' installed on their computer). In addition, it provides commonly used model fit indices such as the Akaike information criterion (AIC) and Bayesian information criterion (BIC), as well as classification accuracy measures such as entropy. The package also includes fully functional likelihood ratio tests (LRT) and bootstrap likelihood ratio tests (BLRT) to facilitate model comparison, along with bootstrap-based and observed information matrix-based standard error estimation. Furthermore, it supports the standard thr [...truncated...]
Author: Haijiang Qin [aut, cre, cph] ,
Lei Guo [aut, cph]
Maintainer: Haijiang Qin <haijiang133@outlook.com>
Diff between LCPA versions 1.0.0 dated 2026-01-22 and 1.0.1 dated 2026-02-27
LCPA-1.0.0/LCPA/tests/main_LCA.R |only LCPA-1.0.0/LCPA/tests/main_LPA.R |only LCPA-1.0.1/LCPA/DESCRIPTION | 8 +- LCPA-1.0.1/LCPA/MD5 | 32 +++++----- LCPA-1.0.1/LCPA/NEWS.md | 6 ++ LCPA-1.0.1/LCPA/R/LCA.R | 25 ++++---- LCPA-1.0.1/LCPA/R/LCPA.R | 6 +- LCPA-1.0.1/LCPA/R/LPA.R | 22 ++++--- LCPA-1.0.1/LCPA/R/LRT.test.Bootstrap.R | 2 LCPA-1.0.1/LCPA/R/LTA.R | 6 +- LCPA-1.0.1/LCPA/R/S3print.R | 2 LCPA-1.0.1/LCPA/inst/python/Net_LCA.py | 74 ++++++++++--------------- LCPA-1.0.1/LCPA/inst/python/Net_LPA.py | 76 ++++++++++---------------- LCPA-1.0.1/LCPA/man/LCA.Rd | 3 - LCPA-1.0.1/LCPA/man/LCPA.Rd | 3 - LCPA-1.0.1/LCPA/man/LPA.Rd | 3 - LCPA-1.0.1/LCPA/man/LTA.Rd | 3 - LCPA-1.0.1/LCPA/tests/main_LCA_attention_10.R |only LCPA-1.0.1/LCPA/tests/main_LPA_attention_10.R |only 19 files changed, 130 insertions(+), 141 deletions(-)
Title: A Shiny App for Design of Experiments in Life Sciences
Description: A shiny design of experiments (DOE) app that aids in the creation of traditional,
un-replicated, augmented and partially-replicated designs applied to agriculture,
plant breeding, forestry, animal and biological sciences.
Author: Didier Murillo [cre, aut],
Salvador Gezan [aut],
Ana Heilman [ctb],
Thomas Walk [ctb],
Johan Aparicio [ctb],
Matthew Seefeldt [ctb],
Jean-Marc Montpetit [ctb],
Richard Horsley [ctb],
North Dakota State University [cph]
Maintainer: Didier Murillo <didier.murilloflorez@ndsu.edu>
Diff between FielDHub versions 1.4.2 dated 2024-07-26 and 1.5.0 dated 2026-02-27
DESCRIPTION | 8 MD5 | 96 ++-- NEWS.md | 3 R/app_ui.R | 4 R/fct_RCDB_augmented.R | 722 +++++++++++++++++++++++++---------- R/fct_diagonal_arrangement.R | 45 +- R/fct_do_optim.R | 13 R/fct_optimized_arrangement.R | 58 ++ R/fct_partially_replicated.R | 32 + R/fct_strip_plot.R | 117 +++-- R/globals.R | 2 R/mod_Optim.R | 2 R/mod_RCBD_augmented.R | 733 +++++++++++++++--------------------- R/mod_STRIPD.R | 22 - R/mod_multi_loc_prep.R | 19 R/mod_pREPS.R | 18 R/run_app.R | 14 R/utils_pREP.R | 152 ++++--- R/utils_plot_RCBD.R | 493 ++++++++++++++---------- R/utils_plot_diagonal_arrangement.R | 174 +++++--- R/utils_swap_functions.R | 537 +++++++++++++++----------- build/vignette.rds |binary inst/doc/RCBD_augmented.R | 12 inst/doc/RCBD_augmented.html | 47 +- inst/doc/alpha_lattice.R | 12 inst/doc/alpha_lattice.html | 47 +- inst/doc/diagonal_arrangement.R | 18 inst/doc/diagonal_arrangement.html | 87 ++-- inst/doc/full_factorial.R | 12 inst/doc/full_factorial.html | 5 inst/doc/multi_location_prep.R | 14 inst/doc/multi_location_prep.html | 147 +++---- inst/doc/partially_replicated.R | 12 inst/doc/partially_replicated.html | 113 ++--- inst/doc/rcbd.R | 12 inst/doc/rcbd.html | 5 inst/doc/row_column.R | 6 inst/doc/row_column.html | 45 +- inst/doc/split_plot.R | 12 inst/doc/split_plot.html | 5 man/RCBD_augmented.Rd | 3 man/multi_location_prep.Rd | 4 man/optimized_arrangement.Rd | 5 man/partially_replicated.Rd | 12 man/run_app.Rd | 4 man/strip_plot.Rd | 58 +- man/swap_pairs.Rd | 53 +- tests/testthat/test_RCBD_layouts.R |only tests/testthat/test_prep.R |only vignettes/news/fieldhub-1-2-0.Rmd | 2 50 files changed, 2398 insertions(+), 1618 deletions(-)
Title: Emoji and Font Awesome in Graphics
Description: An implementation of using emoji and fontawesome for using in both
base and 'ggplot2' graphics.
Author: Guangchuang Yu [aut, cre] ,
Claus Thorn Ekstroem [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between emojifont versions 0.5.5 dated 2021-04-20 and 0.6.0 dated 2026-02-27
emojifont-0.5.5/emojifont/inst/doc/emojifont.Rmd |only emojifont-0.5.5/emojifont/inst/emoji_fonts/EmojiOne.ttf |only emojifont-0.5.5/emojifont/inst/emoji_fonts/OpenSansEmoji.ttf |only emojifont-0.5.5/emojifont/vignettes/emojifont.Rmd |only emojifont-0.6.0/emojifont/DESCRIPTION | 21 emojifont-0.6.0/emojifont/MD5 | 60 emojifont-0.6.0/emojifont/NAMESPACE | 41 emojifont-0.6.0/emojifont/NEWS | 120 - emojifont-0.6.0/emojifont/NEWS.md | 31 emojifont-0.6.0/emojifont/R/emojifont.R | 320 ++-- emojifont-0.6.0/emojifont/R/fontawesome.R | 214 +- emojifont-0.6.0/emojifont/R/geom_emoji.R | 86 - emojifont-0.6.0/emojifont/R/sysdata.rda |binary emojifont-0.6.0/emojifont/R/utilities.R |only emojifont-0.6.0/emojifont/R/zzz.R | 17 emojifont-0.6.0/emojifont/README.md |only emojifont-0.6.0/emojifont/build/vignette.rds |binary emojifont-0.6.0/emojifont/inst/doc/emojifont.R | 105 - emojifont-0.6.0/emojifont/inst/doc/emojifont.html | 798 ++++++----- emojifont-0.6.0/emojifont/inst/doc/emojifont.qmd |only emojifont-0.6.0/emojifont/inst/emoji_fonts/OpenMoji.ttf |only emojifont-0.6.0/emojifont/inst/inst |only emojifont-0.6.0/emojifont/inst/scripts |only emojifont-0.6.0/emojifont/man/emoji.Rd | 46 emojifont-0.6.0/emojifont/man/fontawesome.Rd | 46 emojifont-0.6.0/emojifont/man/geom_emoji.Rd | 80 - emojifont-0.6.0/emojifont/man/geom_fontawesome.Rd | 74 - emojifont-0.6.0/emojifont/man/list.emojifonts.Rd | 34 emojifont-0.6.0/emojifont/man/load.emojifont.Rd | 34 emojifont-0.6.0/emojifont/man/load.fontawesome.Rd | 34 emojifont-0.6.0/emojifont/man/sample_emoji.Rd | 50 emojifont-0.6.0/emojifont/man/sample_fontawesome.Rd | 50 emojifont-0.6.0/emojifont/man/search_emoji.Rd | 48 emojifont-0.6.0/emojifont/man/search_fontawesome.Rd | 44 emojifont-0.6.0/emojifont/vignettes/emojifont.bib | 24 emojifont-0.6.0/emojifont/vignettes/emojifont.qmd |only 36 files changed, 1306 insertions(+), 1071 deletions(-)
Title: Extract Text from Microsoft Word Documents
Description: Wraps the 'AntiWord' utility to extract text from Microsoft Word
documents. The utility only supports the old 'doc' format, not the new xml
based 'docx' format. Use the 'xml2' package to read the latter.
Author: Jeroen Ooms [aut, cre] ,
Adri van Os [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between antiword versions 1.3.4 dated 2024-10-04 and 1.3.5 dated 2026-02-27
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 3 +++ src/Makevars | 5 ++++- 4 files changed, 14 insertions(+), 8 deletions(-)
Title: Geographical Detectors for Assessing Spatial Factors
Description: Geographical detectors for measuring spatial stratified heterogeneity,
as described in Jinfeng Wang (2010) <doi:10.1080/13658810802443457> and
Jinfeng Wang (2016) <doi:10.1016/j.ecolind.2016.02.052>. Includes the
optimal discretization of continuous data, four primary functions of
geographical detectors, comparison of size effects of spatial unit and
the visualizations of results. To use the package and to refer the
descriptions of the package, methods and case datasets, please cite
Yongze Song (2020) <doi:10.1080/15481603.2020.1760434>. The model has
been applied in factor exploration of road performance and multi-scale
spatial segmentation for network data, as described in
Yongze Song (2018) <doi:10.3390/rs10111696> and
Yongze Song (2020) <doi:10.1109/TITS.2020.3001193>, respectively.
Author: Yongze Song [aut, cph] ,
Wenbo Lyu [aut, cre]
Maintainer: Wenbo Lyu <lyu.geosocial@gmail.com>
Diff between GD versions 10.8 dated 2024-11-20 and 10.9 dated 2026-02-27
DESCRIPTION | 18 +++++++++--------- MD5 | 18 +++++++++--------- NEWS.md | 26 +++++++++++++++----------- R/zzz.R | 2 +- README.md | 12 +++++++----- build/vignette.rds |binary inst/doc/GD.R | 4 ++-- inst/doc/GD.Rmd | 6 +++--- inst/doc/GD.html | 12 ++++++------ vignettes/GD.Rmd | 6 +++--- 10 files changed, 55 insertions(+), 49 deletions(-)