Title: Marshall-Olkin Shock Models with Semi-Independent Time
Description: Provides tools for analyzing Marshall-Olkin shock models semi-independent time.
It includes interactive 'shiny' applications for exploring copula-based dependence
structures, along with functions for modeling and visualization. The methods are
based on Mijanovic and Popovic (2024, submitted) "An R package for Marshall-Olkin
shock models with semi-independent times."
Author: Andjela Mijanovic [aut, cre],
Bozidar Popovic [aut]
Maintainer: Andjela Mijanovic <andjela.m@ucg.ac.me>
Diff between MOsemiind versions 0.1.0 dated 2025-02-04 and 0.1.2 dated 2026-02-28
DESCRIPTION | 6 MD5 | 4 inst/app/app.R | 876 ++++++++++++++++++++++++++++++--------------------------- 3 files changed, 480 insertions(+), 406 deletions(-)
Title: Advanced Graphics and Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment. Also includes
a graphics device for creating drawing onto images using pixel coordinates.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between magick versions 2.9.0 dated 2025-09-08 and 2.9.1 dated 2026-02-28
DESCRIPTION | 8 ++-- MD5 | 20 +++++------ NEWS | 3 + R/color.R | 2 - R/ggplot2.R | 6 +-- build/vignette.rds |binary inst/doc/intro.Rmd | 2 - inst/doc/intro.html | 91 ++++++++++++++++++++++++++-------------------------- man/color.Rd | 2 - man/image_ggplot.Rd | 4 +- vignettes/intro.Rmd | 2 - 11 files changed, 72 insertions(+), 68 deletions(-)
Title: Basic Functions in Knowledge Space Theory Using Matrix
Representation
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstMatrix' package
provides basic functionalities to generate, handle, and manipulate
knowledge structures and knowledge spaces. Opposed to the 'kst'
package, 'kstMatrix' uses matrix representations for knowledge
structures. Furthermore, 'kstMatrix' contains several knowledge spaces
developed by the research group around Cornelia Dowling through
querying experts.
Author: Cord Hockemeyer [aut, cre],
Peter Steiner [aut],
Wai Wong [aut]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstMatrix versions 2.2-1 dated 2026-01-23 and 2.3-0 dated 2026-02-28
kstMatrix-2.2-1/kstMatrix/man/kmbasis.kmsurmisefunction.Rd |only kstMatrix-2.2-1/kstMatrix/man/kmbasis.kmsurmiserelation.Rd |only kstMatrix-2.2-1/kstMatrix/man/kmbasis.matrix.Rd |only kstMatrix-2.3-0/kstMatrix/Changelog | 8 + kstMatrix-2.3-0/kstMatrix/DESCRIPTION | 8 - kstMatrix-2.3-0/kstMatrix/MD5 | 56 +++---- kstMatrix-2.3-0/kstMatrix/NAMESPACE | 3 kstMatrix-2.3-0/kstMatrix/R/kmbasis.R | 29 ++- kstMatrix-2.3-0/kstMatrix/R/kmbasis.kmsurmisefunction.R | 35 ++-- kstMatrix-2.3-0/kstMatrix/R/kmbasis.kmsurmiserelation.R | 4 kstMatrix-2.3-0/kstMatrix/R/kmbasis.matrix.R | 97 ++++++------- kstMatrix-2.3-0/kstMatrix/R/kmfamset.R | 8 - kstMatrix-2.3-0/kstMatrix/R/kmspace.R | 2 kstMatrix-2.3-0/kstMatrix/R/kmsrvalidate.R | 2 kstMatrix-2.3-0/kstMatrix/R/kmstructure.R | 4 kstMatrix-2.3-0/kstMatrix/R/kmtrivial.R | 2 kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.R | 25 --- kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.kmdata.R |only kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.kmfamset.R |only kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.kmstructure.R |only kstMatrix-2.3-0/kstMatrix/R/plot.R | 3 kstMatrix-2.3-0/kstMatrix/inst/doc/kstMatrix.html | 28 +-- kstMatrix-2.3-0/kstMatrix/man/kmSF2basis.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmSR2basis.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmSRvalidate.Rd | 2 kstMatrix-2.3-0/kstMatrix/man/kmbasis.Rd | 77 +++++++++- kstMatrix-2.3-0/kstMatrix/man/kmspace.Rd | 2 kstMatrix-2.3-0/kstMatrix/man/kmstructure.Rd | 2 kstMatrix-2.3-0/kstMatrix/man/kmsurmisefunction.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmsurmiserelation.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmunionclosure.Rd | 16 +- kstMatrix-2.3-0/kstMatrix/man/plot.Rd | 3 32 files changed, 248 insertions(+), 184 deletions(-)
Title: Consistent API for Hypothesis Testing
Description: Provides a consistent API for hypothesis testing built on
principles from 'Structure and Interpretation of Computer Programs':
data abstraction, closure (combining tests yields tests), and
higher-order functions (transforming tests). Implements z-tests,
Wald tests, likelihood ratio tests, Fisher's method for combining
p-values, and multiple testing corrections. Designed for use by
other packages that want to wrap their hypothesis tests in a
consistent interface.
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <lex@metafunctor.com>
Diff between hypothesize versions 0.10.0 dated 2025-12-11 and 0.11.0 dated 2026-02-28
hypothesize-0.10.0/hypothesize/man/dof.hypothesis_test.Rd |only hypothesize-0.10.0/hypothesize/man/is_significant_at.hypothesis_test.Rd |only hypothesize-0.10.0/hypothesize/man/pval.hypothesis_test.Rd |only hypothesize-0.10.0/hypothesize/man/test_stat.hypothesis_test.Rd |only hypothesize-0.11.0/hypothesize/DESCRIPTION | 12 hypothesize-0.11.0/hypothesize/MD5 | 53 hypothesize-0.11.0/hypothesize/NAMESPACE | 12 hypothesize-0.11.0/hypothesize/NEWS.md | 24 hypothesize-0.11.0/hypothesize/R/hypothesize.R | 618 ++++++++-- hypothesize-0.11.0/hypothesize/README.md | 22 hypothesize-0.11.0/hypothesize/build/vignette.rds |binary hypothesize-0.11.0/hypothesize/inst/doc/boolean-algebra.R |only hypothesize-0.11.0/hypothesize/inst/doc/boolean-algebra.Rmd |only hypothesize-0.11.0/hypothesize/inst/doc/boolean-algebra.html |only hypothesize-0.11.0/hypothesize/inst/doc/introduction.R | 6 hypothesize-0.11.0/hypothesize/inst/doc/introduction.Rmd | 16 hypothesize-0.11.0/hypothesize/inst/doc/introduction.html | 97 - hypothesize-0.11.0/hypothesize/man/adjust_pval.Rd | 8 hypothesize-0.11.0/hypothesize/man/complement_test.Rd |only hypothesize-0.11.0/hypothesize/man/dof.Rd | 13 hypothesize-0.11.0/hypothesize/man/hypothesize-package.Rd |only hypothesize-0.11.0/hypothesize/man/intersection_test.Rd |only hypothesize-0.11.0/hypothesize/man/invert_test.Rd |only hypothesize-0.11.0/hypothesize/man/is_significant_at.Rd | 17 hypothesize-0.11.0/hypothesize/man/lower.Rd |only hypothesize-0.11.0/hypothesize/man/print.confidence_set.Rd |only hypothesize-0.11.0/hypothesize/man/print.hypothesis_test.Rd | 6 hypothesize-0.11.0/hypothesize/man/pval.Rd | 13 hypothesize-0.11.0/hypothesize/man/score_test.Rd |only hypothesize-0.11.0/hypothesize/man/test_stat.Rd | 13 hypothesize-0.11.0/hypothesize/man/union_test.Rd |only hypothesize-0.11.0/hypothesize/man/upper.Rd |only hypothesize-0.11.0/hypothesize/man/wald_test.Rd | 54 hypothesize-0.11.0/hypothesize/tests/testthat/test-hypothesis-tests.R | 427 ++++++ hypothesize-0.11.0/hypothesize/vignettes/boolean-algebra.Rmd |only hypothesize-0.11.0/hypothesize/vignettes/introduction.Rmd | 16 36 files changed, 1223 insertions(+), 204 deletions(-)
Title: Compute Analytic Hierarchy Process
Description: Compute a tree level hierarchy, judgment matrix, consistency index and ratio, priority vectors, hierarchic synthesis and rank. Based on the book entitled "Models, Methods, Concepts and Applications of the Analytic Hierarchy Process" by Saaty and Vargas (2012, ISBN 978-1-4614-3597-6).
Author: Luciane Ferreira Alcoforado [aut, cre],
Lyncoln Sousa [aut],
Orlando Celso Longo [aut],
Alessandra Simao [ctb],
Steven Dutt Ross [ctb],
Leonardo Filgueira [ctb]
Maintainer: Luciane Ferreira Alcoforado <lucianea@id.uff.br>
Diff between AHPWR versions 0.1.0 dated 2022-12-06 and 0.1.2 dated 2026-02-28
AHPWR-0.1.0/AHPWR/tests |only AHPWR-0.1.2/AHPWR/DESCRIPTION | 12 AHPWR-0.1.2/AHPWR/MD5 | 51 AHPWR-0.1.2/AHPWR/NAMESPACE | 6 AHPWR-0.1.2/AHPWR/R/ahp_s.R | 2 AHPWR-0.1.2/AHPWR/R/flow_chart-OLD.R |only AHPWR-0.1.2/AHPWR/R/flow_chart.R | 175 +-- AHPWR-0.1.2/AHPWR/R/hello.R |only AHPWR-0.1.2/AHPWR/R/ler.R | 58 - AHPWR-0.1.2/AHPWR/R/matrix_ahp-OLD.R |only AHPWR-0.1.2/AHPWR/R/matrix_ahp.R | 70 - AHPWR-0.1.2/AHPWR/R/xlsx_ahp.R | 67 - AHPWR-0.1.2/AHPWR/build/vignette.rds |binary AHPWR-0.1.2/AHPWR/inst/doc/Intro_to_AHP.R | 4 AHPWR-0.1.2/AHPWR/inst/doc/Intro_to_AHP.Rmd | 2 AHPWR-0.1.2/AHPWR/inst/doc/Intro_to_AHP.html | 1378 ++++++++++++--------------- AHPWR-0.1.2/AHPWR/man/ahp_s.Rd | 2 AHPWR-0.1.2/AHPWR/man/autoVetor.Rd | 52 - AHPWR-0.1.2/AHPWR/man/calcula_prioridades.Rd | 40 AHPWR-0.1.2/AHPWR/man/flow_chart.Rd | 82 - AHPWR-0.1.2/AHPWR/man/formata_tabela.Rd | 44 AHPWR-0.1.2/AHPWR/man/ler.Rd | 57 - AHPWR-0.1.2/AHPWR/man/matrix_ahp.Rd | 72 - AHPWR-0.1.2/AHPWR/man/matriz_julgamento.Rd | 48 AHPWR-0.1.2/AHPWR/man/normaliza.Rd | 50 AHPWR-0.1.2/AHPWR/man/transforma_tabela.Rd | 50 AHPWR-0.1.2/AHPWR/man/xlsx_ahp.Rd | 70 - AHPWR-0.1.2/AHPWR/vignettes/Intro_to_AHP.Rmd | 2 28 files changed, 1160 insertions(+), 1234 deletions(-)
Title: Inferring Age-Dependent Disease Topic from Diagnosis Data
Description: We propose an age-dependent topic modelling (ATM) model,
providing a low-rank representation of longitudinal records of
hundreds of distinct diseases in large electronic health record data sets. The model
assigns to each individual topic weights for several disease topics;
each disease topic reflects a set of diseases that tend to co-occur as
a function of age, quantified by age-dependent topic loadings for each
disease. The model assumes that for each disease diagnosis, a topic is
sampled based on the individual’s topic weights (which sum to 1 across
topics, for a given individual), and a disease is sampled based on the
individual’s age and the age-dependent topic loadings (which sum to 1
across diseases, for a given topic at a given age). The model
generalises the Latent Dirichlet Allocation (LDA) model by allowing
topic loadings for each topic to vary with age.
References: Jiang (2023) <doi:10.1038/s41588-023-01522-8>.
Author: Xilin Jiang [aut, cre]
Maintainer: Xilin Jiang <jiangxilin1@gmail.com>
Diff between AgeTopicModels versions 0.1.0 dated 2025-10-21 and 0.3.0 dated 2026-02-28
DESCRIPTION | 11 - MD5 | 14 - NEWS.md | 7 R/ATM_inference.R | 329 ++++++++++++++++++++++++---------------- README.md | 10 - data/HES_age_example.rda |binary data/HES_icd10_example.rda |binary tests/testthat/test-inference.R | 34 ++++ 8 files changed, 263 insertions(+), 142 deletions(-)
More information about AgeTopicModels at CRAN
Permanent link
Title: Multivariate Random Forest with Compositional Responses
Description: Multivariate random forests with compositional responses and Euclidean predictors is performed. The compositional data are first transformed using the additive log-ratio transformation, or the alpha-transformation of Tsagris, Preston and Wood (2011), <doi:10.48550/arXiv.1106.1451>, and then the multivariate random forest of Rahman R., Otridge J. and Pal R. (2017), <doi:10.1093/bioinformatics/btw765>, is applied.
Author: Michail Tsagris [aut, cre],
Christos Adam [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between CompositionalRF versions 1.4 dated 2025-09-07 and 1.6 dated 2026-02-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/alfa.comp.rf.R | 2 +- R/cv.alfacomprf.R | 6 +++--- man/CompositionalRF-package.Rd | 4 ++-- src/mrf.cpp | 4 ++-- 6 files changed, 17 insertions(+), 17 deletions(-)
More information about CompositionalRF at CRAN
Permanent link
Title: Sumerian Cuneiform Text Analysis
Description: Provides functions for converting transliterated Sumerian texts to sign names and cuneiform characters,
creating and querying dictionaries, analyzing the structure of
Sumerian words, and creating translations. Includes a built-in dictionary and supports both
forward lookup (Sumerian to English) and reverse lookup (English to
Sumerian).
Author: Robin Wellmann [aut, cre]
Maintainer: Robin Wellmann <ro.wellmann@gmail.com>
Diff between sumer versions 1.1.0 dated 2026-02-18 and 1.2.0 dated 2026-02-28
sumer-1.1.0/sumer/man/sumer-package.Rd |only sumer-1.2.0/sumer/DESCRIPTION | 16 - sumer-1.2.0/sumer/MD5 | 56 +++-- sumer-1.2.0/sumer/NAMESPACE | 5 sumer-1.2.0/sumer/R/extract_skeleton_entries.R |only sumer-1.2.0/sumer/R/guess_substr_info.R |only sumer-1.2.0/sumer/R/init_substr_info.R |only sumer-1.2.0/sumer/R/look_up.R | 15 + sumer-1.2.0/sumer/R/mark_ngrams.R | 4 sumer-1.2.0/sumer/R/mark_skeleton_entries.R |only sumer-1.2.0/sumer/R/ngram_frequencies.R | 118 +----------- sumer-1.2.0/sumer/R/plot_sign_grammar.R | 32 ++- sumer-1.2.0/sumer/R/sign_grammar.R | 11 - sumer-1.2.0/sumer/R/skeleton.R | 215 ++++++++-------------- sumer-1.2.0/sumer/R/substr_position.R |only sumer-1.2.0/sumer/R/translate.R |only sumer-1.2.0/sumer/R/zzz.R | 2 sumer-1.2.0/sumer/build |only sumer-1.2.0/sumer/inst/doc |only sumer-1.2.0/sumer/man/extract_skeleton_entries.Rd |only sumer-1.2.0/sumer/man/guess_substr_info.Rd |only sumer-1.2.0/sumer/man/init_substr_info.Rd |only sumer-1.2.0/sumer/man/look_up.Rd | 3 sumer-1.2.0/sumer/man/make_dictionary.Rd | 2 sumer-1.2.0/sumer/man/mark_ngrams.Rd | 4 sumer-1.2.0/sumer/man/mark_skeleton_entries.Rd |only sumer-1.2.0/sumer/man/ngram_frequencies.Rd | 8 sumer-1.2.0/sumer/man/plot_sign_grammar.Rd | 5 sumer-1.2.0/sumer/man/sign_grammar.Rd | 4 sumer-1.2.0/sumer/man/skeleton.Rd | 75 +++---- sumer-1.2.0/sumer/man/substr_position.Rd |only sumer-1.2.0/sumer/man/translate.Rd |only sumer-1.2.0/sumer/src |only sumer-1.2.0/sumer/vignettes |only 34 files changed, 261 insertions(+), 314 deletions(-)
Title: Data Base Backend for 'mlr3'
Description: Extends the 'mlr3' package with a backend to transparently
work with databases such as 'SQLite', 'DuckDB', 'MySQL', 'MariaDB', or
'PostgreSQL'. The package provides three additional backends:
'DataBackendDplyr' relies on the abstraction of package 'dbplyr' to
interact with most DBMS. 'DataBackendDuckDB' operates on 'DuckDB' data
bases and also on Apache Parquet files. 'DataBackendPolars' operates on
'Polars' data frames.
Author: Michel Lang [aut] ,
Lona Koers [aut],
Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3db versions 0.7.0 dated 2025-10-06 and 0.7.1 dated 2026-02-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ tests/testthat/test_train_predict_dplyr.R | 2 +- tests/testthat/test_train_predict_duckdb.R | 2 +- tests/testthat/test_train_predict_polars.R | 2 +- 6 files changed, 16 insertions(+), 12 deletions(-)
Title: Tools to Manage a Parametric Function that Describes Phenology
and More
Description: Functions used to fit and test the phenology of species based on counts. Based on Girondot, M. (2010) <doi:10.3354/esr00292> for the phenology function, Girondot, M. (2017) <doi:10.1016/j.ecolind.2017.05.063> for the convolution of negative binomial, Girondot, M. and Rizzo, A. (2015) <doi:10.2993/etbi-35-02-337-353.1> for Bayesian estimate, Pfaller JB, ..., Girondot M (2019) <doi:10.1007/s00227-019-3545-x> for tag-loss estimate, Hancock J, ..., Girondot M (2019) <doi:10.1016/j.ecolmodel.2019.04.013> for nesting history, Laloe J-O, ..., Girondot M, Hays GC (2020) <doi:10.1007/s00227-020-03686-x> for aggregating several seasons.
Author: Marc Girondot [aut, cre]
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between phenology versions 2025.11.12 dated 2025-11-12 and 2026.2.28 dated 2026-02-28
DESCRIPTION | 8 ++-- MD5 | 22 +++++------ NEWS | 5 ++ R/add_phenology.R | 2 + R/phenology-package.R | 8 ++-- R/phenology_MHmcmc.R | 5 ++ R/plot.phenology.R | 92 ++++++++++++++++++++++++++++++++--------------- R/summary.phenology.R | 24 ++++++++++-- man/figures/imgfile.png |binary man/phenology-package.Rd | 8 ++-- man/phenology_MHmcmc.Rd | 5 ++ man/plot.phenology.Rd | 7 ++- 12 files changed, 124 insertions(+), 62 deletions(-)
Title: Tools for Various R Functions Helpers
Description: Contains miscellaneous functions useful for managing 'NetCDF' files (see <https://en.wikipedia.org/wiki/NetCDF>), get moon phase and time for sun rise and fall, tide level, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot [aut, cre]
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between HelpersMG versions 2025.12.22 dated 2025-12-23 and 2026.2.28 dated 2026-02-28
DESCRIPTION | 8 +++---- MD5 | 38 +++++++++++++++++++------------------ NAMESPACE | 1 NEWS | 3 +- R/HelpersMG-package.R | 4 +-- R/Probability_Best_Model_WAIC.R |only R/extractAIC.R | 2 + R/fitdistrquantiles.R | 2 + R/flexit.R | 2 + R/sysdata.rda |binary inst/shiny/cutter/ui.R | 2 - man/ExtractAIC.glm.Rd | 3 ++ man/FormatCompareAIC.Rd | 1 man/HelpersMG-package.Rd | 4 +-- man/Probability_Best_Model_WAIC.Rd |only man/compare_AIC.Rd | 1 man/compare_AICc.Rd | 1 man/compare_BIC.Rd | 1 man/figures/TB.png |binary man/fitdistrquantiles.Rd | 2 + man/flexit.Rd | 2 + 21 files changed, 49 insertions(+), 28 deletions(-)
Title: 'Rcpp' Integration for Numerical Computing Libraries
Description: A collection of open source libraries for numerical computing
(numerical integration, optimization, etc.) and their integration with
'Rcpp'.
Author: Yixuan Qiu [aut, cre],
Ralf Stubner [ctb] ,
Sreekumar Balan [aut] ,
Matt Beall [aut] ,
Mark Sauder [aut] ,
Naoaki Okazaki [aut] ,
Thomas Hahn [aut]
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between RcppNumerical versions 0.6-0 dated 2023-09-06 and 0.7-0 dated 2026-02-28
DESCRIPTION | 11 MD5 | 54 README.md | 287 +++ build/vignette.rds |binary inst/AUTHORS | 2 inst/NEWS.Rd | 25 inst/doc/introduction.R | 21 inst/doc/introduction.Rmd | 289 +++- inst/doc/introduction.html | 867 +++++++----- inst/include/Func.h | 6 inst/include/RcppNumerical.h | 5 inst/include/integration/wrapper.h | 115 + inst/include/optimization/LBFGS.h | 12 inst/include/optimization/LBFGSB.h | 2 inst/include/optimization/LBFGSpp/BFGSMat.h | 138 + inst/include/optimization/LBFGSpp/BKLDLT.h | 2 inst/include/optimization/LBFGSpp/Cauchy.h | 2 inst/include/optimization/LBFGSpp/LineSearchBacktracking.h | 3 inst/include/optimization/LBFGSpp/LineSearchBracketing.h | 11 inst/include/optimization/LBFGSpp/LineSearchMoreThuente.h | 429 ++++- inst/include/optimization/LBFGSpp/LineSearchNocedalWright.h | 11 inst/include/optimization/LBFGSpp/Param.h | 2 inst/include/optimization/LBFGSpp/SubspaceMin.h | 2 inst/include/optimization/wrapper.h | 44 src/cuhre/rcpp_stop.h |only src/cuhre/stddecl.h | 6 src/fastLR.cpp | 4 src/rcpp_stop.cpp |only vignettes/introduction.Rmd | 289 +++- 29 files changed, 1955 insertions(+), 684 deletions(-)
Title: Fast, Compact Iterators and Tools
Description: A fresh take on iterators in R. Designed to be cross-compatible with the 'iterators' package, but using the 'nextOr' method will offer better performance as well as more compact code. With batteries included: includes a collection of iterator constructors and combinators ported and refined from the 'iterators', 'itertools', and 'itertools2' packages.
Author: Peter Meilstrup [cre, aut, cph],
Folashade Daniel [aut],
Revolution Analytics [aut, cph],
Steve Weston [aut, cph],
John A. Ramey [aut, cph],
Kayla Schaefer [aut],
Hadley Wickham [aut]
Maintainer: Peter Meilstrup <peter.meilstrup@gmail.com>
Diff between iterors versions 1.0 dated 2023-05-18 and 1.0.1 dated 2026-02-28
iterors-1.0.1/iterors/DESCRIPTION | 10 iterors-1.0.1/iterors/MD5 | 102 +- iterors-1.0.1/iterors/NAMESPACE | 16 iterors-1.0.1/iterors/NEWS.md | 9 iterors-1.0.1/iterors/R/iRNGStream.R | 20 iterors-1.0.1/iterors/R/icombinations.R | 6 iterors-1.0.1/iterors/R/icount.R | 30 iterors-1.0.1/iterors/R/ienumerate.R | 12 iterors-1.0.1/iterors/R/igrid.R | 5 iterors-1.0.1/iterors/R/ipermutations.R | 5 iterors-1.0.1/iterors/R/ireadBin.R | 8 iterors-1.0.1/iterors/R/ireadLines.R | 15 iterors-1.0.1/iterors/R/ireaddf.R | 8 iterors-1.0.1/iterors/R/irecord.R | 12 iterors-1.0.1/iterors/R/iseq.R | 16 iterors-1.0.1/iterors/R/itabulate.R | 6 iterors-1.0.1/iterors/R/iunique.R | 13 iterors-1.0.1/iterors/R/rng.R | 61 + iterors-1.0.1/iterors/README.md | 32 iterors-1.0.1/iterors/build/vignette.rds |binary iterors-1.0.1/iterors/inst/doc/README.R | 26 iterors-1.0.1/iterors/inst/doc/README.Rmd | 4 iterors-1.0.1/iterors/inst/doc/README.html | 255 ++++--- iterors-1.0.1/iterors/inst/doc/categories.Rmd | 41 - iterors-1.0.1/iterors/inst/doc/categories.html | 278 +++++--- iterors-1.0.1/iterors/inst/doc/cross-reference.Rmd | 2 iterors-1.0.1/iterors/inst/doc/cross-reference.html | 49 - iterors-1.0.1/iterors/inst/doc/iterors.html | 287 ++++---- iterors-1.0.1/iterors/inst/doc/writing.html | 695 +++++++++++++------- iterors-1.0.1/iterors/man/i_RNGStream.Rd |only iterors-1.0.1/iterors/man/i_combinations.Rd |only iterors-1.0.1/iterors/man/i_count.Rd |only iterors-1.0.1/iterors/man/i_dedup.Rd |only iterors-1.0.1/iterors/man/i_div.Rd |only iterors-1.0.1/iterors/man/i_enumerate.Rd | 11 iterors-1.0.1/iterors/man/i_grid.Rd |only iterors-1.0.1/iterors/man/i_permutations.Rd |only iterors-1.0.1/iterors/man/i_read.table.Rd |only iterors-1.0.1/iterors/man/i_readBin.Rd |only iterors-1.0.1/iterors/man/i_readLines.Rd |only iterors-1.0.1/iterors/man/i_readdf.Rd |only iterors-1.0.1/iterors/man/i_rle.Rd | 2 iterors-1.0.1/iterors/man/i_seq.Rd |only iterors-1.0.1/iterors/man/i_tabulate.Rd |only iterors-1.0.1/iterors/man/i_unique.Rd | 2 iterors-1.0.1/iterors/man/makeIwrapper.Rd | 22 iterors-1.0.1/iterors/man/r_to_py.iteror.Rd | 2 iterors-1.0.1/iterors/man/record.Rd | 5 iterors-1.0.1/iterors/man/rng.Rd | 123 +++ iterors-1.0.1/iterors/vignettes/README.Rmd | 4 iterors-1.0.1/iterors/vignettes/categories.Rmd | 41 - iterors-1.0.1/iterors/vignettes/cross-reference.Rmd | 2 iterors-1.0/iterors/man/iRNGStream.Rd |only iterors-1.0/iterors/man/icombinations.Rd |only iterors-1.0/iterors/man/icount.Rd |only iterors-1.0/iterors/man/idedup.Rd |only iterors-1.0/iterors/man/idiv.Rd |only iterors-1.0/iterors/man/igrid.Rd |only iterors-1.0/iterors/man/ipermutations.Rd |only iterors-1.0/iterors/man/iread.table.Rd |only iterors-1.0/iterors/man/ireadBin.Rd |only iterors-1.0/iterors/man/ireadLines.Rd |only iterors-1.0/iterors/man/ireaddf.Rd |only iterors-1.0/iterors/man/iseq.Rd |only iterors-1.0/iterors/man/itabulate.Rd |only 65 files changed, 1470 insertions(+), 767 deletions(-)
Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Ross Bennett [ctb],
Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between xts versions 0.14.1 dated 2024-10-15 and 0.14.2 dated 2026-02-28
xts-0.14.1/xts/src/subset.old.c |only xts-0.14.1/xts/src/xts.c |only xts-0.14.2/xts/DESCRIPTION | 6 xts-0.14.2/xts/MD5 | 45 +++--- xts-0.14.2/xts/NEWS.md | 22 +++ xts-0.14.2/xts/R/plot.R | 21 +-- xts-0.14.2/xts/R/rollapply.xts.R | 17 ++ xts-0.14.2/xts/README.md | 6 xts-0.14.2/xts/build/vignette.rds |binary xts-0.14.2/xts/inst/doc/xts-faq.pdf |binary xts-0.14.2/xts/inst/doc/xts.pdf |binary xts-0.14.2/xts/inst/include/xts.h | 7 - xts-0.14.2/xts/inst/tinytest/test-endpoints.R | 3 xts-0.14.2/xts/inst/tinytest/test-rollapply.R |only xts-0.14.2/xts/src/attr.c | 182 ++++++++++---------------- xts-0.14.2/xts/src/endpoints.c | 145 ++++++++++---------- xts-0.14.2/xts/src/extract_col.c | 4 xts-0.14.2/xts/src/init.c | 1 xts-0.14.2/xts/src/isXts.c | 22 +-- xts-0.14.2/xts/src/merge.c | 8 - xts-0.14.2/xts/src/na.c | 2 xts-0.14.2/xts/src/rbind.c | 6 xts-0.14.2/xts/src/startofyear.c | 20 +- xts-0.14.2/xts/src/subset.c | 16 +- xts-0.14.2/xts/src/unique.time.c | 6 25 files changed, 263 insertions(+), 276 deletions(-)
Title: Wrapper for MUMPS Library
Description: Some basic features of 'MUMPS' (Multifrontal Massively Parallel
sparse direct Solver) are wrapped in a class whose methods can be used
for sequentially solving a sparse linear system (symmetric or not)
with one or many right hand sides (dense or sparse).
There is a possibility to do separately symbolic analysis,
LU (or LDL^t) factorization and system solving.
Third part ordering libraries are included and can be used: 'PORD', 'METIS', 'SCOTCH'.
'MUMPS' method was first described in Amestoy et al. (2001) <doi:10.1137/S0895479899358194>
and Amestoy et al. (2006) <doi:10.1016/j.parco.2005.07.004>.
Author: Serguei Sokol [aut, cre],
Emmanuel Agullo [ctb],
Patrick Amestoy [ctb, cph],
Maurice Bremond [ctb],
Alfredo Buttari [ctb],
Philippe Combes [ctb],
Marie Durand [ctb],
Aurelia Fevre [ctb],
Abdou Guermouche [ctb],
Guillaume Joslin [ctb],
Jacko Koster [c [...truncated...]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between rmumps versions 5.2.1-36 dated 2025-12-12 and 5.2.1-37 dated 2026-02-28
DESCRIPTION | 9 MD5 | 155 ++++++------- NEWS | 114 +++++---- inst/COPYRIGHTS | 2 inst/include/dmumps_c.h | 23 + inst/include/rcpp_errwarn.h |only inst/include/rmumps.h | 2 man/rmumps-package.Rd | 2 src/Makevars | 3 src/Makevars.seq | 3 src/RcppExports.cpp | 14 - src/lib/MUMPS_5.2.1/PORD/include/macros.h | 11 src/lib/MUMPS_5.2.1/PORD/lib/bucket.c | 10 src/lib/MUMPS_5.2.1/PORD/lib/ddbisect.c | 40 +-- src/lib/MUMPS_5.2.1/PORD/lib/ddcreate.c | 28 +- src/lib/MUMPS_5.2.1/PORD/lib/gbipart.c | 12 - src/lib/MUMPS_5.2.1/PORD/lib/gbisect.c | 40 +-- src/lib/MUMPS_5.2.1/PORD/lib/gelim.c | 90 +++---- src/lib/MUMPS_5.2.1/PORD/lib/graph.c | 14 - src/lib/MUMPS_5.2.1/PORD/lib/interface.c | 36 +-- src/lib/MUMPS_5.2.1/PORD/lib/minpriority.c | 26 +- src/lib/MUMPS_5.2.1/PORD/lib/multisector.c | 8 src/lib/MUMPS_5.2.1/PORD/lib/nestdiss.c | 8 src/lib/MUMPS_5.2.1/PORD/lib/symbfac.c | 16 - src/lib/MUMPS_5.2.1/PORD/lib/tree.c | 20 - src/lib/MUMPS_5.2.1/src/mumps_common.h | 3 src/lib/MUMPS_5.2.1/src/mumps_io.c | 16 - src/lib/MUMPS_5.2.1/src/mumps_io_thread.c | 2 src/lib/MUMPS_5.2.1/src/mumps_metis64.c | 2 src/lib/metis-5.1.0/GKlib/b64.c | 2 src/lib/metis-5.1.0/GKlib/csr.c | 8 src/lib/metis-5.1.0/GKlib/error.c | 8 src/lib/metis-5.1.0/GKlib/fkvkselect.c | 8 src/lib/metis-5.1.0/GKlib/getopt.c | 26 +- src/lib/metis-5.1.0/GKlib/gk_macros.h | 19 - src/lib/metis-5.1.0/GKlib/gkregex.c | 2 src/lib/metis-5.1.0/GKlib/graph.c | 18 - src/lib/metis-5.1.0/GKlib/mcore.c | 16 - src/lib/metis-5.1.0/GKlib/memory.c | 8 src/lib/metis-5.1.0/GKlib/pdb.c | 24 +- src/lib/metis-5.1.0/libmetis/balance.c | 30 +- src/lib/metis-5.1.0/libmetis/checkgraph.c | 18 - src/lib/metis-5.1.0/libmetis/coarsen.c | 18 - src/lib/metis-5.1.0/libmetis/compress.c | 6 src/lib/metis-5.1.0/libmetis/contig.c | 18 - src/lib/metis-5.1.0/libmetis/debug.c | 8 src/lib/metis-5.1.0/libmetis/fm.c | 28 +- src/lib/metis-5.1.0/libmetis/initpart.c | 20 - src/lib/metis-5.1.0/libmetis/kmetis.c | 2 src/lib/metis-5.1.0/libmetis/kwayfm.c | 56 ++-- src/lib/metis-5.1.0/libmetis/mesh.c | 2 src/lib/metis-5.1.0/libmetis/metislib.h | 3 src/lib/metis-5.1.0/libmetis/minconn.c | 28 +- src/lib/metis-5.1.0/libmetis/mincover.c | 6 src/lib/metis-5.1.0/libmetis/ometis.c | 6 src/lib/metis-5.1.0/libmetis/options.c | 178 +++++++-------- src/lib/metis-5.1.0/libmetis/parmetis.c | 14 - src/lib/metis-5.1.0/libmetis/pmetis.c | 2 src/lib/metis-5.1.0/libmetis/separator.c | 4 src/lib/metis-5.1.0/libmetis/sfm.c | 18 - src/lib/metis-5.1.0/libmetis/stat.c | 16 - src/lib/metis-5.1.0/libmetis/timing.c | 28 +- src/lib/metis-5.1.0/libmetis/wspace.c | 2 src/lib/scotch_6.0.9/src/libscotch/common.h | 3 src/lib/scotch_6.0.9/src/libscotch/common_error.c | 4 src/lib/scotch_6.0.9/src/libscotch/dummysizes.c | 16 - src/lib/scotch_6.0.9/src/libscotch/library_errcom.c | 4 src/lib/scotch_6.0.9/src/libscotch/library_error.c | 4 src/lib/scotch_6.0.9/src/libscotch/library_error_exit.c | 4 src/lib/scotch_6.0.9/src/libscotch/mesh_coarsen.c | 12 - src/lib/scotch_6.0.9/src/libscotch/parser_ll.c | 2 src/lib/scotch_6.0.9/src/libscotch/parser_yy.c | 26 +- src/lib/scotch_6.0.9/src/libscotch/vdgraph_separate_df.c | 2 src/lib/scotch_6.0.9/src/libscotch/vmesh_separate_fm.c | 6 src/lib/scotch_6.0.9/src/libscotch/wgraph_part_gg.c | 4 src/lib/scotch_6.0.9/src/libscotch/wgraph_part_gp.c | 4 src/rmumps_module.cpp | 20 + tests/testthat.R | 4 tests/testthat/test_rmumps.R | 2 79 files changed, 760 insertions(+), 716 deletions(-)
Title: Partial Least Squares Regression for Cox Models and Related
Techniques
Description: Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings <doi:10.1093/bioinformatics/btu660>, Bastien, P., Bertrand, F., Meyer N., Maumy-Bertrand, M. (2015), Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data, Bioinformatics, 31(3):397-404. Cross validation criteria were studied in <doi:10.48550/arXiv.1810.02962>, Bertrand, F., Bastien, Ph. and Maumy-Bertrand, M. (2018), Cross validating extensions of kernel, sparse or regular partial least squares regression models to censored data.
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between plsRcox versions 1.8.0 dated 2025-09-14 and 1.8.1 dated 2026-02-28
DESCRIPTION | 12 ++-- MD5 | 12 ++-- NAMESPACE | 5 + R/plsRcox-package.R | 5 - README.md | 140 +++++++++++++++++++------------------------------ build/partial.rdb |binary man/plsRcox-package.Rd | 4 - 7 files changed, 74 insertions(+), 104 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD, Plot
Functions
Description: Fit and compare nonlinear mixed-effects models in
differential equations with flexible dosing information commonly seen
in pharmacokinetics and pharmacodynamics (Almquist, Leander, and
Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation
solving is by compiled C code provided in the 'rxode2' package (Wang,
Hallow, and James 2015 <doi:10.1002/psp4.12052>). This package is for
'ggplot2' plotting methods for 'nlmixr2' objects.
Author: Matthew Fidler [aut, cre] ,
Bill Denney [ctb] ,
Wenping Wang [aut],
Vipul Mann [aut]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2plot versions 5.0.0 dated 2025-11-29 and 5.0.1 dated 2026-02-28
DESCRIPTION | 13 +- MD5 | 12 +- NEWS.md | 8 + R/vpcPlot.R | 186 ++++++++++++++++++++++++++++++++++++--- man/vpcPlot.Rd | 19 +++ tests/testthat/test-plots-cens.R | 6 - tests/testthat/test-plots.R | 16 +-- 7 files changed, 218 insertions(+), 42 deletions(-)
Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Description: This model fitting tool incorporates cyclic coordinate descent and
majorization-minimization approaches to fit a variety of regression models
found in large-scale observational healthcare data. Implementations focus
on computational optimization and fine-scale parallelization to yield
efficient inference in massive datasets. Please see:
Suchard, Simpson, Zorych, Ryan and Madigan (2013) <doi:10.1145/2414416.2414791>.
Author: Marc A. Suchard [aut, cre],
Martijn J. Schuemie [aut],
Trevor R. Shaddox [aut],
Yuxi Tian [aut],
Jianxiao Yang [aut],
Eric Kawaguchi [aut],
Sushil Mittal [ctb],
Observational Health Data Sciences and Informatics [cph],
Marcus Geelnard [cph, ctb] ,
Ru [...truncated...]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between Cyclops versions 3.6.0 dated 2025-07-18 and 3.7.0 dated 2026-02-28
DESCRIPTION | 6 MD5 | 28 ++-- NEWS.md | 10 + R/ModelFit.R | 2 R/Residuals.R | 42 ++++-- man/testProportionality.Rd | 8 - src/Makevars.in | 26 --- src/Makevars.win.in | 26 --- src/RcppCyclopsInterface.cpp | 1 src/RcppModelData.cpp | 4 src/cyclops/CyclicCoordinateDescent.cpp | 24 +++ src/cyclops/engine/ModelSpecifics.hpp | 212 +++++++++++++------------------- tests/testthat/test-bootstrap.R | 12 - tests/testthat/test-residuals.R | 120 +++++++++++++----- tools/configure.R | 2 15 files changed, 273 insertions(+), 250 deletions(-)
Title: 'Blowfish' Key Derivation and Password Hashing
Description: Bindings to the 'blowfish' password hashing algorithm
<https://www.openbsd.org/papers/bcrypt-paper.pdf> derived from
the 'OpenBSD' implementation.
Author: Jeroen Ooms [aut, cre] ,
Damien Miller [cph] ,
Niels Provos [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between bcrypt versions 1.2.0 dated 2024-10-04 and 1.2.1 dated 2026-02-28
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS | 3 +++ src/bcrypt/sha2.c | 4 +--- 4 files changed, 12 insertions(+), 11 deletions(-)
Title: Black-Box Optimization Toolkit
Description: Features highly configurable search spaces via the 'paradox'
package and optimizes every user-defined objective function. The
package includes several optimization algorithms e.g. Random Search,
Iterated Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband
(in 'mlr3hyperband'). bbotk is the base package of 'mlr3tuning',
'mlr3fselect' and 'miesmuschel'.
Author: Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut],
Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between bbotk versions 1.8.1 dated 2025-11-26 and 1.9.0 dated 2026-02-28
DESCRIPTION | 20 +- MD5 | 118 +++++++------ NAMESPACE | 4 NEWS.md | 10 + R/ArchiveAsync.R | 18 +- R/ArchiveBatch.R | 11 + R/Codomain.R | 27 +-- R/EvalInstance.R |only R/OptimInstance.R | 79 +++------ R/OptimInstanceBatch.R | 2 R/OptimizerAsync.R | 7 R/OptimizerBatch.R | 2 R/Terminator.R | 4 R/TerminatorStagnation.R | 9 - R/TerminatorStagnationBatch.R | 9 - R/TerminatorStagnationHypervolume.R | 6 R/bbotk_reflections.R | 2 R/conditions.R |only R/helper.R | 7 build/partial.rdb |binary man/ArchiveAsync.Rd | 6 man/Codomain.Rd | 5 man/EvalInstance.Rd |only man/OptimInstance.Rd | 53 +----- man/OptimInstanceAsync.Rd | 6 man/OptimInstanceAsyncMultiCrit.Rd | 4 man/OptimInstanceAsyncSingleCrit.Rd | 4 man/OptimInstanceBatch.Rd | 6 man/OptimInstanceBatchMultiCrit.Rd | 4 man/OptimInstanceBatchSingleCrit.Rd | 4 man/OptimInstanceMultiCrit.Rd | 4 man/OptimInstanceSingleCrit.Rd | 4 man/bbotk_conditions.Rd |only man/bbotk_reflections.Rd | 2 man/choose_search_space.Rd |only man/terminated_error.Rd | 2 tests/testthat/_snaps/TerminatorClockTime.md | 1 tests/testthat/_snaps/TerminatorCombo.md | 1 tests/testthat/_snaps/TerminatorEvals.md | 3 tests/testthat/_snaps/TerminatorNone.md | 2 tests/testthat/_snaps/TerminatorPerfReached.md | 1 tests/testthat/_snaps/TerminatorRunTime.md | 1 tests/testthat/_snaps/TerminatorStagnation.md | 1 tests/testthat/_snaps/TerminatorStagnationBatch.md | 2 tests/testthat/helper.R | 16 - tests/testthat/helper_rush.R |only tests/testthat/teardown.R | 1 tests/testthat/test_ArchiveAsync.R | 79 +++++++-- tests/testthat/test_ArchiveAsyncFrozen.R | 16 + tests/testthat/test_ArchiveBatch.R | 24 ++ tests/testthat/test_CallbackAsync.R | 157 +++++++++--------- tests/testthat/test_EvalInstance.R |only tests/testthat/test_Objective.R | 68 +++++++ tests/testthat/test_OptimInstanceAsyncSingleCrit.R | 89 +++------- tests/testthat/test_OptimizerAsynDesignPoints.R | 18 +- tests/testthat/test_OptimizerAsynGridSearch.R | 17 + tests/testthat/test_OptimizerAsync.R | 143 ++++------------ tests/testthat/test_OptimizerAsyncRandomSearch.R | 18 +- tests/testthat/test_OptimizerBatchLocalSearch.R | 1 tests/testthat/test_TerminatorStagnation.R | 14 + tests/testthat/test_TerminatorStagnationBatch.R | 19 ++ tests/testthat/test_TerminatorStagnationHypervolume.R | 14 + tests/testthat/test_conditions.R |only tests/testthat/test_mlr_callbacks.R | 17 - 64 files changed, 623 insertions(+), 539 deletions(-)