Title: The Q-Matrix Validation Methods Framework
Description: Provide a variety of Q-matrix validation methods for the generalized cognitive diagnosis models, including the method based on the generalized deterministic input, noisy, and gate model (G-DINA) by de la Torre (2011) <DOI:10.1007/s11336-011-9207-7> discrimination index (the GDI method) by de la Torre and Chiu (2016) <DOI:10.1007/s11336-015-9467-8>, the step-wise Wald test method (the Wald method) by Ma and de la Torre (2020) <DOI:10.1111/bmsp.12156>, the Hull method by Najera et al. (2021) <DOI:10.1111/bmsp.12228>, the multiple logistic regression‑based Q‑matrix validation method (the MLR-B method) by Tu et al. (2022) <DOI:10.3758/s13428-022-01880-x>, the beta method based on signal detection theory by Li and Chen (2024) <DOI:10.1111/bmsp.12371> and Q-matrix validation based on relative fit index by Chen et la. (2013) <DOI:10.1111/j.1745-3984.2012.00185.x>. Different research methods and iterative procedures during Q-matrix validating are avai [...truncated...]
Author: Haijiang Qin [aut, cre, cph] ,
Lei Guo [aut, cph]
Maintainer: Haijiang Qin <haijiang133@outlook.com>
Diff between Qval versions 1.1.1 dated 2025-01-09 and 1.2.0 dated 2025-03-07
Qval-1.1.1/Qval/R/GDI.R |only Qval-1.1.1/Qval/R/Hull.R |only Qval-1.1.1/Qval/R/MLR-B.R |only Qval-1.1.1/Qval/R/P.R |only Qval-1.1.1/Qval/R/PVAF.R |only Qval-1.1.1/Qval/R/Pattern.R |only Qval-1.1.1/Qval/R/R2.R |only Qval-1.1.1/Qval/R/Wald.R |only Qval-1.1.1/Qval/R/beta.R |only Qval-1.1.1/Qval/R/cov.R |only Qval-1.1.1/Qval/R/priority.R |only Qval-1.1.1/Qval/R/validation.R |only Qval-1.1.1/Qval/man/plot.Hull.Rd |only Qval-1.2.0/Qval/DESCRIPTION | 19 +- Qval-1.2.0/Qval/MD5 | 108 +++++++-------- Qval-1.2.0/Qval/NAMESPACE | 11 + Qval-1.2.0/Qval/NEWS.md | 43 +++--- Qval-1.2.0/Qval/R/CDM.R | 157 +++++++++++---------- Qval-1.2.0/Qval/R/IndexBeta.R |only Qval-1.2.0/Qval/R/IndexPVAF.R |only Qval-1.2.0/Qval/R/IndexPriority.R |only Qval-1.2.0/Qval/R/IndexR2.R |only Qval-1.2.0/Qval/R/MLRlasso.R | 3 Qval-1.2.0/Qval/R/Mmatrix.R | 18 +- Qval-1.2.0/Qval/R/QvalBeta.R |only Qval-1.2.0/Qval/R/QvalGDI.R |only Qval-1.2.0/Qval/R/QvalHull.R |only Qval-1.2.0/Qval/R/QvalMLRB.R |only Qval-1.2.0/Qval/R/QvalWald.R |only Qval-1.2.0/Qval/R/Qvalindex.R | 113 ++++++--------- Qval-1.2.0/Qval/R/Qvalvalidation.R |only Qval-1.2.0/Qval/R/Rmatrix.R | 26 +-- Qval-1.2.0/Qval/R/S3.R |only Qval-1.2.0/Qval/R/Wald.test.R | 72 +++++----- Qval-1.2.0/Qval/R/fit.R | 40 ++--- Qval-1.2.0/Qval/R/plot.Hull.R | 74 +++++----- Qval-1.2.0/Qval/R/sim.MQ.R | 8 - Qval-1.2.0/Qval/R/sim.Q.R | 11 - Qval-1.2.0/Qval/R/sim.data.R | 60 ++++++-- Qval-1.2.0/Qval/R/zzz.R | 4 Qval-1.2.0/Qval/man/CDM.Rd | 135 +++++++++--------- Qval-1.2.0/Qval/man/Wald.test.Rd | 29 ++-- Qval-1.2.0/Qval/man/extract.Rd |only Qval-1.2.0/Qval/man/fit.Rd | 37 ++--- Qval-1.2.0/Qval/man/get.Mmatrix.Rd | 11 - Qval-1.2.0/Qval/man/get.PVAF.Rd | 38 ++--- Qval-1.2.0/Qval/man/get.R2.Rd | 48 +++--- Qval-1.2.0/Qval/man/get.Rmatrix.Rd | 12 - Qval-1.2.0/Qval/man/get.beta.Rd |only Qval-1.2.0/Qval/man/get.priority.Rd | 44 ++++-- Qval-1.2.0/Qval/man/parallel_iter.Rd | 63 ++++---- Qval-1.2.0/Qval/man/plot.validation.Rd |only Qval-1.2.0/Qval/man/print.CDM.Rd |only Qval-1.2.0/Qval/man/print.sim.data.Rd |only Qval-1.2.0/Qval/man/print.validation.Rd |only Qval-1.2.0/Qval/man/sim.MQ.Rd | 8 - Qval-1.2.0/Qval/man/sim.Q.Rd | 10 - Qval-1.2.0/Qval/man/sim.data.Rd | 35 ++-- Qval-1.2.0/Qval/man/validation.Rd | 229 ++++++++++++++++++-------------- Qval-1.2.0/Qval/man/zOSR.Rd | 8 - Qval-1.2.0/Qval/man/zQRR.Rd | 6 Qval-1.2.0/Qval/man/zTNR.Rd | 10 - Qval-1.2.0/Qval/man/zTPR.Rd | 10 - Qval-1.2.0/Qval/man/zUSR.Rd | 10 - Qval-1.2.0/Qval/man/zVRR.Rd | 10 - Qval-1.2.0/Qval/src/PGDINA.cpp | 4 Qval-1.2.0/Qval/src/calculatePEst.cpp | 2 Qval-1.2.0/Qval/tests/building.R | 9 - Qval-1.2.0/Qval/tests/demo.R | 58 ++++---- Qval-1.2.0/Qval/tests/repeat.R | 10 - 70 files changed, 863 insertions(+), 740 deletions(-)
Title: Seasonal Mid-Summer Drought Characteristics
Description: Characterization of a mid-summer drought (MSD) with precipitation
based statistics. The MSD is a phenomenon of decreased rainfall during a
typical rainy season. It is a feature of rainfall in much of Central America
and is also found in other locations, typically those with a Mediterranean
climate. Details on the metrics are in Maurer et al. (2022)
<doi:10.5194/hess-26-1425-2022>.
Author: Turner Uyeda [aut],
Ed Maurer [aut, cre, cph],
Iris Stewart-Frey [aut],
Kenneth Joseph [aut],
Alex Avila [aut]
Maintainer: Ed Maurer <emaurer@scu.edu>
Diff between msdrought versions 0.1.0 dated 2024-05-27 and 0.1.1 dated 2025-03-07
msdrought-0.1.0/msdrought/inst/doc/sample-walkthrough.R |only msdrought-0.1.0/msdrought/inst/doc/sample-walkthrough.Rmd |only msdrought-0.1.0/msdrought/inst/doc/sample-walkthrough.html |only msdrought-0.1.0/msdrought/vignettes/sample-walkthrough.Rmd |only msdrought-0.1.1/msdrought/DESCRIPTION | 16 msdrought-0.1.1/msdrought/LICENSE | 4 msdrought-0.1.1/msdrought/MD5 | 74 msdrought-0.1.1/msdrought/NAMESPACE | 14 msdrought-0.1.1/msdrought/NEWS.md | 13 msdrought-0.1.1/msdrought/R/msdDates.R | 8 msdrought-0.1.1/msdrought/R/msdFilter.R | 80 msdrought-0.1.1/msdrought/R/msdGraph.R | 244 +- msdrought-0.1.1/msdrought/R/msdMain.R | 172 - msdrought-0.1.1/msdrought/R/msdStats.R | 29 msdrought-0.1.1/msdrought/R/timeseries.R | 28 msdrought-0.1.1/msdrought/R/which_max.R |only msdrought-0.1.1/msdrought/README.md | 236 +- msdrought-0.1.1/msdrought/build/vignette.rds |binary msdrought-0.1.1/msdrought/inst/doc/Sample-Walkthrough.R |only msdrought-0.1.1/msdrought/inst/doc/Sample-Walkthrough.Rmd |only msdrought-0.1.1/msdrought/inst/doc/Sample-Walkthrough.html |only msdrought-0.1.1/msdrought/inst/doc/average-daily.R | 125 - msdrought-0.1.1/msdrought/inst/doc/average-daily.Rmd | 73 msdrought-0.1.1/msdrought/inst/doc/average-daily.html | 876 ++++------ msdrought-0.1.1/msdrought/inst/doc/raster-sample.R | 76 msdrought-0.1.1/msdrought/inst/doc/raster-sample.Rmd | 46 msdrought-0.1.1/msdrought/inst/doc/raster-sample.html | 812 ++++----- msdrought-0.1.1/msdrought/inst/doc/vector-from-raster.R | 133 - msdrought-0.1.1/msdrought/inst/doc/vector-from-raster.Rmd | 44 msdrought-0.1.1/msdrought/inst/doc/vector-from-raster.html | 739 +++++--- msdrought-0.1.1/msdrought/inst/extdata/prcp_cropped.tif.aux.json | 8 msdrought-0.1.1/msdrought/man/f.which.max.Rd |only msdrought-0.1.1/msdrought/man/figures/README-example-1.png |binary msdrought-0.1.1/msdrought/man/msdDates.Rd | 66 msdrought-0.1.1/msdrought/man/msdFilter.Rd | 66 msdrought-0.1.1/msdrought/man/msdGraph.Rd | 90 - msdrought-0.1.1/msdrought/man/msdMain.Rd | 82 msdrought-0.1.1/msdrought/man/msdStats.Rd | 1 msdrought-0.1.1/msdrought/man/timeseries.Rd | 50 msdrought-0.1.1/msdrought/vignettes/Sample-Walkthrough.Rmd |only msdrought-0.1.1/msdrought/vignettes/average-daily.Rmd | 73 msdrought-0.1.1/msdrought/vignettes/raster-sample.Rmd | 46 msdrought-0.1.1/msdrought/vignettes/vector-from-raster.Rmd | 44 43 files changed, 2218 insertions(+), 2150 deletions(-)
Title: Metabolomics Data Analysis Functions
Description: A collection of functions for processing and analyzing metabolite data.
The namesake function mrbin() converts 1D
or 2D Nuclear Magnetic Resonance data into a matrix of values suitable for further data analysis and
performs basic processing steps in a reproducible way. Negative values, a
common issue in such data, can be replaced by positive values (<doi:10.1021/acs.jproteome.0c00684>). All used
parameters are stored in a readable text file and can be restored from that
file to enable exact reproduction of the data at a later time. The function fia() ranks features according
to their impact on classifier models, especially artificial neural network models.
Author: Matthias Klein [aut, cre]
Maintainer: Matthias Klein <matthias.s.klein@gmx.net>
Diff between mrbin versions 1.8.0 dated 2024-12-04 and 1.9.0 dated 2025-03-07
DESCRIPTION | 6 MD5 | 33 - NAMESPACE | 1 NEWS.md | 13 R/mrbin.R | 1117 +++++++++++++++++++++++++++++++++----------- inst/doc/mrbin.R | 255 +++++----- inst/doc/mrbin.Rnw | 247 ++++++--- inst/doc/mrbin.pdf |binary inst/extdata/data |only inst/extdata/example.csv |only man/annotatemrbin.Rd | 47 + man/editmetabolitesmrbin.Rd | 14 man/mrheatmap.Rd |only man/mrplot.Rd | 23 man/plotMultiNMR.Rd | 6 man/plotNMR.Rd | 6 man/plotPCA.Rd | 3 vignettes/mrbin.Rnw | 247 ++++++--- 18 files changed, 1448 insertions(+), 570 deletions(-)
Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors, matrices
and arrays: automatic propagation, conversion, derivation
and simplification of units; raising errors in case of unit
incompatibility. Compatible with the POSIXct, Date and difftime
classes. Uses the UNIDATA udunits library and unit database for
unit compatibility checking and conversion.
Documentation about 'units' is provided in the paper by Pebesma, Mailund &
Hiebert (2016, <doi:10.32614/RJ-2016-061>), included in this package as a
vignette; see 'citation("units")' for details.
Author: Edzer Pebesma [aut, cre] ,
Thomas Mailund [aut],
Tomasz Kalinowski [aut],
James Hiebert [ctb],
Inaki Ucar [aut] ,
Thomas Lin Pedersen [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between units versions 0.8-5 dated 2023-11-28 and 0.8-6 dated 2025-03-07
units-0.8-5/units/man/ud_are_convertible.Rd |only units-0.8-6/units/DESCRIPTION | 10 units-0.8-6/units/MD5 | 74 units-0.8-6/units/NAMESPACE | 3 units-0.8-6/units/NEWS.md | 33 units-0.8-6/units/R/RcppExports.R | 12 units-0.8-6/units/R/arith.R | 27 units-0.8-6/units/R/conversion.R | 14 units-0.8-6/units/R/helpers.R | 34 units-0.8-6/units/R/make_units.R | 4 units-0.8-6/units/R/math.R | 2 units-0.8-6/units/R/misc.R | 93 - units-0.8-6/units/R/mixed.R | 8 units-0.8-6/units/R/plot.R | 1 units-0.8-6/units/R/scale_units.R | 54 units-0.8-6/units/R/summaries.R | 8 units-0.8-6/units/R/symbolic_units.R | 70 units-0.8-6/units/R/tidyverse.R | 1 units-0.8-6/units/R/udunits.R | 73 units-0.8-6/units/build/vignette.rds |binary units-0.8-6/units/configure | 877 +++++---- units-0.8-6/units/configure.ac | 30 units-0.8-6/units/inst/doc/measurement_units_in_R.html | 915 ++++++---- units-0.8-6/units/inst/doc/units.html | 670 +++---- units-0.8-6/units/man/cbind.units.Rd |only units-0.8-6/units/man/deparse_unit.Rd | 2 units-0.8-6/units/man/keep_units.Rd | 20 units-0.8-6/units/man/udunits2.Rd |only units-0.8-6/units/man/units.Rd | 4 units-0.8-6/units/src/RcppExports.cpp | 62 units-0.8-6/units/src/udunits.cpp | 69 units-0.8-6/units/tests/testthat/_snaps/plot/ggplot2-limits-other-units.svg |only units-0.8-6/units/tests/testthat/_snaps/plot/ggplot2-limits-via-scale-with-units.svg |only units-0.8-6/units/tests/testthat/_snaps/plot/ggplot2-limits-via-scale.svg |only units-0.8-6/units/tests/testthat/_snaps/plot/ggplot2-limits-via-xlim.svg |only units-0.8-6/units/tests/testthat/test_arith.R | 15 units-0.8-6/units/tests/testthat/test_conversion.R | 19 units-0.8-6/units/tests/testthat/test_helpers.R | 15 units-0.8-6/units/tests/testthat/test_misc.R | 49 units-0.8-6/units/tests/testthat/test_plot.R | 30 units-0.8-6/units/tests/testthat/test_summaries.R | 2 units-0.8-6/units/tests/testthat/test_udunits.R |only 42 files changed, 1962 insertions(+), 1338 deletions(-)
Title: Tidy Integration of Large Language Models
Description: A tidy interface for integrating large language model (LLM) APIs such as 'Claude', 'Openai', 'Groq','Mistral' and local models via 'Ollama' into R workflows. The package supports text and media-based interactions, interactive message history, batch request APIs, and a tidy, pipeline-oriented interface for streamlined integration into data workflows. Web services are available at <https://www.anthropic.com>, <https://openai.com>, <https://groq.com>, <https://mistral.ai/> and <https://ollama.com>.
Author: Eduard Bruell [aut, cre],
Jia Zhang [ctb]
Maintainer: Eduard Bruell <eduard.bruell@zew.de>
Diff between tidyllm versions 0.3.1 dated 2025-02-24 and 0.3.2 dated 2025-03-07
tidyllm-0.3.1/tidyllm/tests/testthat/groq/api.groq.com/openai/v1/chat/completions-cc1a7b-POST.R |only tidyllm-0.3.2/tidyllm/DESCRIPTION | 19 tidyllm-0.3.2/tidyllm/MD5 | 82 +- tidyllm-0.3.2/tidyllm/NAMESPACE | 6 tidyllm-0.3.2/tidyllm/NEWS.md | 73 ++ tidyllm-0.3.2/tidyllm/R/api_azure_openai.R | 55 + tidyllm-0.3.2/tidyllm/R/api_claude.R | 126 +++ tidyllm-0.3.2/tidyllm/R/api_deepseek.R |only tidyllm-0.3.2/tidyllm/R/api_gemini.R | 171 ++++- tidyllm-0.3.2/tidyllm/R/api_groq.R | 35 - tidyllm-0.3.2/tidyllm/R/api_mistral.R | 37 - tidyllm-0.3.2/tidyllm/R/api_ollama.R | 82 ++ tidyllm-0.3.2/tidyllm/R/api_openai.R | 97 ++- tidyllm-0.3.2/tidyllm/R/api_voyage.R |only tidyllm-0.3.2/tidyllm/R/embedding_helpers.R |only tidyllm-0.3.2/tidyllm/R/llm_verbs.R | 10 tidyllm-0.3.2/tidyllm/R/media.R | 52 + tidyllm-0.3.2/tidyllm/R/perform_api_requests.R | 1 tidyllm-0.3.2/tidyllm/R/tidyllm_schema.R | 5 tidyllm-0.3.2/tidyllm/R/tools.R |only tidyllm-0.3.2/tidyllm/R/utilites.R | 41 - tidyllm-0.3.2/tidyllm/README.md | 4 tidyllm-0.3.2/tidyllm/inst/doc/tidyllm.R | 5 tidyllm-0.3.2/tidyllm/inst/doc/tidyllm.Rmd | 8 tidyllm-0.3.2/tidyllm/inst/doc/tidyllm.html | 322 +++++----- tidyllm-0.3.2/tidyllm/man/azure_openai_chat.Rd | 8 tidyllm-0.3.2/tidyllm/man/chat.Rd | 3 tidyllm-0.3.2/tidyllm/man/deepseek.Rd |only tidyllm-0.3.2/tidyllm/man/deepseek_chat.Rd |only tidyllm-0.3.2/tidyllm/man/embed.Rd | 2 tidyllm-0.3.2/tidyllm/man/gemini_chat.Rd | 5 tidyllm-0.3.2/tidyllm/man/groq_chat.Rd | 8 tidyllm-0.3.2/tidyllm/man/img.Rd |only tidyllm-0.3.2/tidyllm/man/mistral_chat.Rd | 8 tidyllm-0.3.2/tidyllm/man/ollama_chat.Rd | 3 tidyllm-0.3.2/tidyllm/man/openai_chat.Rd | 8 tidyllm-0.3.2/tidyllm/man/tidyllm_tool.Rd |only tidyllm-0.3.2/tidyllm/man/voyage.Rd |only tidyllm-0.3.2/tidyllm/man/voyage_embedding.Rd |only tidyllm-0.3.2/tidyllm/tests/testthat/deepseek |only tidyllm-0.3.2/tidyllm/tests/testthat/groq/api.groq.com/openai/v1/chat/completions-adc488-POST.R |only tidyllm-0.3.2/tidyllm/tests/testthat/perplexity |only tidyllm-0.3.2/tidyllm/tests/testthat/test_api_claude.R | 3 tidyllm-0.3.2/tidyllm/tests/testthat/test_api_deepseek.R |only tidyllm-0.3.2/tidyllm/tests/testthat/test_api_gemini.R | 2 tidyllm-0.3.2/tidyllm/tests/testthat/test_api_groq.R | 10 tidyllm-0.3.2/tidyllm/tests/testthat/test_api_perplexity.R |only tidyllm-0.3.2/tidyllm/tests/testthat/test_api_voyage.R |only tidyllm-0.3.2/tidyllm/tests/testthat/test_tidyllm_schema.R |only tidyllm-0.3.2/tidyllm/tests/testthat/test_tooldef.R |only tidyllm-0.3.2/tidyllm/tests/testthat/voyage_embedding_text |only tidyllm-0.3.2/tidyllm/vignettes/tidyllm.Rmd | 8 52 files changed, 972 insertions(+), 327 deletions(-)
Title: Tool for the U.S. SEC EDGAR Retrieval and Parsing of Corporate
Filings
Description: In the USA, companies file different forms with the U.S.
Securities and Exchange Commission (SEC) through EDGAR (Electronic
Data Gathering, Analysis, and Retrieval system). The EDGAR
database automated system collects all the different necessary
filings and makes it publicly available. This package facilitates
retrieving, storing, searching, and parsing of all the available
filings on the EDGAR server. It downloads filings from SEC
server in bulk with a single query. Additionally, it provides
various useful functions: extracts 8-K triggering events, extract
"Business (Item 1)" and "Management's Discussion and Analysis(Item 7)"
sections of annual statements, searches filings for desired
keywords, provides sentiment measures, parses filing header
information, and provides HTML view of SEC filings.
Author: Gunratan Lonare [aut, cre],
Bharat Patil [aut]
Maintainer: Gunratan Lonare <lonare.gunratan@gmail.com>
Diff between edgar versions 2.0.7 dated 2023-10-14 and 2.0.8 dated 2025-03-07
DESCRIPTION | 22 +++-- MD5 | 46 +++++------ R/get8KItems.R | 38 +++++++-- R/getBusinessDescr.R | 47 ++++++++--- R/getDailyMaster.R | 58 +++++++++----- R/getFilingHeader.R | 18 ++-- R/getFilingInfo.R | 20 ++--- R/getFilings.R | 52 ++++++++----- R/getFilingsHTML.R | 18 ++-- R/getMasterIndex.R | 64 ++++++++++------ R/getMgmtDisc.R | 19 ++-- R/getSentiment.R | 16 ++-- R/searchFilings.R | 15 ++- man/get8KItems.Rd | 86 +++++++++++---------- man/getBusinDescr.Rd | 104 +++++++++++++------------- man/getDailyMaster.Rd | 68 ++++++++--------- man/getFilingHeader.Rd | 98 ++++++++++++------------ man/getFilingInfo.Rd | 14 ++- man/getFilings.Rd | 14 ++- man/getFilingsHTML.Rd | 104 +++++++++++++------------- man/getMasterIndex.Rd | 92 ++++++++++++----------- man/getMgmtDisc.Rd | 16 ++-- man/getSentiment.Rd | 196 ++++++++++++++++++++++++------------------------- man/searchFilings.Rd | 106 +++++++++++++------------- 24 files changed, 738 insertions(+), 593 deletions(-)
Title: Spatial Bayesian Methods for Task Functional MRI Studies
Description: Performs a spatial Bayesian general linear model (GLM) for task
functional magnetic resonance imaging (fMRI) data on the cortical surface.
Additional models include group analysis and inference to detect thresholded
areas of activation. Includes direct support for the 'CIFTI' neuroimaging
file format. For more information see A. F. Mejia, Y. R. Yue, D. Bolin, F.
Lindgren, M. A. Lindquist (2020) <doi:10.1080/01621459.2019.1611582> and D.
Spencer, Y. R. Yue, D. Bolin, S. Ryan, A. F. Mejia (2022)
<doi:10.1016/j.neuroimage.2022.118908>.
Author: Amanda Mejia [aut, cre],
Damon Pham [ctb] ,
David Bolin [ctb],
Yu Yue [ctb],
Daniel Spencer [aut] ,
Sarah Ryan [ctb]
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Diff between BayesfMRI versions 0.3.11 dated 2023-12-18 and 0.10.1 dated 2025-03-07
BayesfMRI-0.10.1/BayesfMRI/DESCRIPTION | 54 BayesfMRI-0.10.1/BayesfMRI/MD5 | 250 + BayesfMRI-0.10.1/BayesfMRI/NAMESPACE | 86 BayesfMRI-0.10.1/BayesfMRI/NEWS.md | 16 BayesfMRI-0.10.1/BayesfMRI/R/BayesGLM.R | 1382 +++++----- BayesfMRI-0.10.1/BayesfMRI/R/BayesGLM2.R | 429 ++- BayesfMRI-0.10.1/BayesfMRI/R/BayesGLM2_Bayes_utils.R |only BayesfMRI-0.10.1/BayesfMRI/R/BayesGLM_check_data_inputs.R |only BayesfMRI-0.10.1/BayesfMRI/R/BayesGLM_format_cifti.R |only BayesfMRI-0.10.1/BayesfMRI/R/BayesGLM_session_names.R |only BayesfMRI-0.10.1/BayesfMRI/R/BayesGLM_utils.R | 412 +- BayesfMRI-0.10.1/BayesfMRI/R/BayesfMRI-package.R | 2 BayesfMRI-0.10.1/BayesfMRI/R/EM_utils.R | 15 BayesfMRI-0.10.1/BayesfMRI/R/GLM_Bayesian_EM.R |only BayesfMRI-0.10.1/BayesfMRI/R/GLM_FIR.R |only BayesfMRI-0.10.1/BayesfMRI/R/GLM_classical.R |only BayesfMRI-0.10.1/BayesfMRI/R/GLM_compare.R |only BayesfMRI-0.10.1/BayesfMRI/R/GLM_est_resid_var_pw.R |only BayesfMRI-0.10.1/BayesfMRI/R/RcppExports.R | 6 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Title: Access Data from the Norwegian Parliament API
Description: Functions for retrieving general and specific data from the Norwegian Parliament,
through the Norwegian Parliament API at <https://data.stortinget.no>.
Author: Martin Soeyland [aut, cre]
Maintainer: Martin Soeyland <martin.soyland@stv.uio.no>
Diff between stortingscrape versions 0.3.0 dated 2024-01-18 and 0.4.0 dated 2025-03-07
DESCRIPTION | 17 ++++---- MD5 | 43 +++++++++++---------- NEWS.md | 26 ++++++++++++ R/data.R | 32 +++++++++++++++ R/get_case.R | 8 ++- R/get_meeting_agenda.R | 40 ++++++++++--------- R/get_mp_pic.R | 10 ++-- R/get_proposal_votes.R | 2 R/get_publication.R | 7 ++- R/get_question.R | 87 ++++++++++++++++++++++++------------------- R/get_question_hour.R | 70 ++++++++++++++++++---------------- R/get_session_cases.R | 23 ++++++++++- README.md | 21 ++++++++-- build/vignette.rds |binary data/st_party_colors.rda |only inst/CITATION |only inst/doc/stortingscrape.R | 16 +++---- inst/doc/stortingscrape.Rmd | 2 inst/doc/stortingscrape.html | 14 +++--- man/get_meeting_agenda.Rd | 1 man/get_publication.Rd | 5 +- man/get_question.Rd | 4 + man/st_party_colors.Rd |only vignettes/stortingscrape.Rmd | 2 24 files changed, 279 insertions(+), 151 deletions(-)
More information about stortingscrape at CRAN
Permanent link
Title: Tidy Plots for Scientific Papers
Description: The goal of 'tidyplots' is to streamline the creation of publication-ready plots for scientific papers. It allows to gradually add, remove and adjust plot components using a consistent and intuitive syntax.
Author: Jan Broder Engler [aut, cre, cph]
Maintainer: Jan Broder Engler <broder.engler@gmail.com>
Diff between tidyplots versions 0.2.1 dated 2025-01-19 and 0.2.2 dated 2025-03-07
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tidyplots-0.2.2/tidyplots/R/helpers.R | 193 +-- tidyplots-0.2.2/tidyplots/R/labels.R | 230 ++-- tidyplots-0.2.2/tidyplots/R/plot.R | 141 +- tidyplots-0.2.2/tidyplots/R/remove.R | 142 +- tidyplots-0.2.2/tidyplots/R/themes.R | 72 - tidyplots-0.2.2/tidyplots/R/tidycolor.R | 6 tidyplots-0.2.2/tidyplots/README.md | 102 + tidyplots-0.2.2/tidyplots/build/vignette.rds |binary tidyplots-0.2.2/tidyplots/inst/doc/tidyplots.R | 196 +-- tidyplots-0.2.2/tidyplots/inst/doc/tidyplots.Rmd | 192 +-- tidyplots-0.2.2/tidyplots/inst/doc/tidyplots.html | 196 +-- tidyplots-0.2.2/tidyplots/man/add.Rd | 4 tidyplots-0.2.2/tidyplots/man/add_annotation_text.Rd | 24 tidyplots-0.2.2/tidyplots/man/add_areastack_absolute.Rd | 24 tidyplots-0.2.2/tidyplots/man/add_barstack_absolute.Rd | 32 tidyplots-0.2.2/tidyplots/man/add_boxplot.Rd | 20 tidyplots-0.2.2/tidyplots/man/add_count_bar.Rd | 84 - tidyplots-0.2.2/tidyplots/man/add_curve_fit.Rd | 16 tidyplots-0.2.2/tidyplots/man/add_data_labels.Rd | 30 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tidyplots-0.2.2/tidyplots/man/reverse_x_axis_labels.Rd | 54 tidyplots-0.2.2/tidyplots/man/save_plot.Rd | 40 tidyplots-0.2.2/tidyplots/man/sort_x_axis_labels.Rd | 54 tidyplots-0.2.2/tidyplots/man/split_plot.Rd | 30 tidyplots-0.2.2/tidyplots/man/theme_tidyplot.Rd | 50 tidyplots-0.2.2/tidyplots/man/tidyplot.Rd | 16 tidyplots-0.2.2/tidyplots/man/view_plot.Rd | 26 tidyplots-0.2.2/tidyplots/tests/testthat/_snaps/add-annotation/add-annotation-text.svg | 8 tidyplots-0.2.2/tidyplots/tests/testthat/_snaps/add-general/add-count-x.svg | 2 tidyplots-0.2.2/tidyplots/tests/testthat/_snaps/add-general/add-grouped-count-x.svg | 6 tidyplots-0.2.2/tidyplots/tests/testthat/_snaps/add-general/add-grouped-mean-xy.svg | 6 tidyplots-0.2.2/tidyplots/tests/testthat/_snaps/add-general/add-grouped-median-xy.svg | 6 tidyplots-0.2.2/tidyplots/tests/testthat/_snaps/add-general/add-grouped-sum-xy.svg | 6 tidyplots-0.2.2/tidyplots/tests/testthat/_snaps/add-general/add-mean-xy.svg | 2 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tidyplots-0.2.2/tidyplots/tests/testthat/_snaps/helpers/highlight-the-first-3-animals-in-the-dataset.svg |only tidyplots-0.2.2/tidyplots/tests/testthat/_snaps/helpers/highlight-the-last-3-animals-in-the-dataset.svg |only tidyplots-0.2.2/tidyplots/tests/testthat/test-add-annotation.R | 64 - tidyplots-0.2.2/tidyplots/tests/testthat/test-add-general.R | 552 +++++----- tidyplots-0.2.2/tidyplots/tests/testthat/test-add-heatmap.R | 114 +- tidyplots-0.2.2/tidyplots/tests/testthat/test-add-misc.R | 38 tidyplots-0.2.2/tidyplots/tests/testthat/test-add-points.R | 116 +- tidyplots-0.2.2/tidyplots/tests/testthat/test-add-proportional.R | 382 +++--- tidyplots-0.2.2/tidyplots/tests/testthat/test-add-stats.R | 38 tidyplots-0.2.2/tidyplots/tests/testthat/test-adjust.R | 218 ++- tidyplots-0.2.2/tidyplots/tests/testthat/test-helpers.R | 71 - tidyplots-0.2.2/tidyplots/tests/testthat/test-labels.R | 228 ++-- tidyplots-0.2.2/tidyplots/vignettes/tidyplots.Rmd | 192 +-- 131 files changed, 3451 insertions(+), 3341 deletions(-)
Title: Tests of Equal Predictive Accuracy for Panels of Forecasts
Description: Allows to perform the tests of equal predictive accuracy for panels of forecasts. Main references: Qu et al. (2024) <doi:10.1016/j.ijforecast.2023.08.001> and Akgun et al. (2024) <doi:10.1016/j.ijforecast.2023.02.001>.
Author: Krzysztof Drachal [aut, cre]
Maintainer: Krzysztof Drachal <kdrachal@wne.uw.edu.pl>
Diff between pEPA versions 1.0 dated 2024-07-09 and 1.2 dated 2025-03-07
DESCRIPTION | 12 +++--- MD5 | 15 +++++--- NAMESPACE | 2 + NEWS | 9 ++++ R/RcppExports.R |only R/onUnload.R |only R/tests.R | 105 ++++++++++++++++++++++++++++++-------------------------- inst/include |only src |only 9 files changed, 86 insertions(+), 57 deletions(-)
Title: File IO for Intracranial Electroencephalography
Description: Integrated toolbox supporting common file formats used for intracranial
Electroencephalography (iEEG) and deep-brain stimulation (DBS) study.
Author: Zhengjia Wang [aut, cre]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ieegio versions 0.0.3 dated 2025-01-13 and 0.0.4 dated 2025-03-07
DESCRIPTION | 11 MD5 | 32 + NAMESPACE | 1 NEWS.md | 9 R/aaa-generics-surface.R | 598 ++++++++++++++++++++++++---------- R/aaa-generics-volume.R | 205 +++++++++++ R/aaa.R | 14 R/as_ieegio_surface.R | 107 +++--- R/math-volume.R | 258 +++++++++----- R/xml.R | 7 build/vignette.rds |binary man/imaging-surface.Rd | 16 man/merge.ieegio_surface.Rd |only man/merge.ieegio_volume.Rd |only tests/testthat.R | 2 tests/testthat/setup.R |only tests/testthat/test-hdf5.R | 2 tests/testthat/test-resample_volume.R |only tests/testthat/test-volume.R | 3 19 files changed, 933 insertions(+), 332 deletions(-)
Title: Calculate Genetic Interactions for Paired CRISPR Targets
Description: Helps find meaningful patterns in complex genetic experiments. First gimap takes data from paired CRISPR (Clustered regularly interspaced short palindromic repeats) screens that has been pre-processed to counts table of paired gRNA (guide Ribonucleic Acid) reads. The input data will have cell counts for how well cells grow (or don't grow) when different genes or pairs of genes are disabled. The output of the 'gimap' package is genetic interaction scores which are the distance between the observed CRISPR score and the expected CRISPR score. The expected CRISPR scores are what we expect for the CRISPR values to be for two unrelated genes. The further away an observed CRISPR score is from its expected score the more we suspect genetic interaction. The work in this package is based off of original research from the Alice Berger lab at Fred Hutchinson Cancer Center (2021) <doi:10.1016/j.celrep.2021.109597>.
Author: Candace Savonen [aut, cre],
Phoebe Parrish [aut],
Kate Isaac [aut],
Howard Baek [aut],
Daniel Grosso [aut],
Siobhan O'Brien [aut],
Alice Berger [aut]
Maintainer: Candace Savonen <cansav09@gmail.com>
Diff between gimap versions 1.0.2 dated 2025-02-18 and 1.0.3 dated 2025-03-07
gimap-1.0.2/gimap/man/crtl_genes.Rd |only gimap-1.0.2/gimap/man/gimap_rep_stats.Rd |only gimap-1.0.3/gimap/DESCRIPTION | 6 gimap-1.0.3/gimap/MD5 | 110 ++- gimap-1.0.3/gimap/NAMESPACE | 2 gimap-1.0.3/gimap/NEWS.md | 5 gimap-1.0.3/gimap/R/00-setup_data.R | 16 gimap-1.0.3/gimap/R/01-qc.R | 11 gimap-1.0.3/gimap/R/02-gimap_filter.R | 8 gimap-1.0.3/gimap/R/03-annotate.R | 127 +++- gimap-1.0.3/gimap/R/04-normalize.R | 83 +- gimap-1.0.3/gimap/R/05-calculate_gi.R | 283 +++++++--- gimap-1.0.3/gimap/R/plots-gi.R | 198 ++++-- gimap-1.0.3/gimap/R/plots-norm.R | 4 gimap-1.0.3/gimap/R/plots-qc.R | 7 gimap-1.0.3/gimap/R/utils.R | 69 +- gimap-1.0.3/gimap/README.md | 14 gimap-1.0.3/gimap/inst/doc/quick-start.R | 12 gimap-1.0.3/gimap/inst/doc/quick-start.Rmd | 13 gimap-1.0.3/gimap/inst/doc/quick-start.html | 17 gimap-1.0.3/gimap/inst/doc/timepoint-example.R | 10 gimap-1.0.3/gimap/inst/doc/timepoint-example.Rmd | 10 gimap-1.0.3/gimap/inst/doc/timepoint-example.html | 12 gimap-1.0.3/gimap/inst/doc/treatment_example.R | 6 gimap-1.0.3/gimap/inst/doc/treatment_example.Rmd | 6 gimap-1.0.3/gimap/inst/doc/treatment_example.html | 6 gimap-1.0.3/gimap/inst/extdata/Achilles_common_essentials.csv |only gimap-1.0.3/gimap/man/calc_gi.Rd | 17 gimap-1.0.3/gimap/man/cn_setup.Rd | 8 gimap-1.0.3/gimap/man/ctrl_genes.Rd |only gimap-1.0.3/gimap/man/delete_annotation.Rd |only gimap-1.0.3/gimap/man/delete_example_data.Rd |only gimap-1.0.3/gimap/man/get_example_data.Rd | 13 gimap-1.0.3/gimap/man/get_figshare.Rd | 14 gimap-1.0.3/gimap/man/gimap_annotate.Rd | 42 + gimap-1.0.3/gimap/man/gimap_filter.Rd | 2 gimap-1.0.3/gimap/man/gimap_normalize.Rd | 17 gimap-1.0.3/gimap/man/gimap_stats.Rd |only gimap-1.0.3/gimap/man/plot_crispr.Rd | 2 gimap-1.0.3/gimap/man/plot_exp_v_obs_scatter.Rd | 10 gimap-1.0.3/gimap/man/plot_rank_scatter.Rd | 6 gimap-1.0.3/gimap/man/plot_targets_bar.Rd | 4 gimap-1.0.3/gimap/man/plot_volcano.Rd | 8 gimap-1.0.3/gimap/man/qc_cdf.Rd | 1 gimap-1.0.3/gimap/man/qc_constructs_countzero_bar.Rd | 1 gimap-1.0.3/gimap/man/qc_cor_heatmap.Rd | 1 gimap-1.0.3/gimap/man/qc_filter_plasmid.Rd | 2 gimap-1.0.3/gimap/man/qc_filter_zerocounts.Rd | 2 gimap-1.0.3/gimap/man/qc_sample_hist.Rd | 1 gimap-1.0.3/gimap/man/qc_variance_hist.Rd | 1 gimap-1.0.3/gimap/man/run_qc.Rd | 7 gimap-1.0.3/gimap/man/setup_data.Rd | 14 gimap-1.0.3/gimap/man/tpm_setup.Rd | 8 gimap-1.0.3/gimap/tests/testthat/test-gi-calc.R | 36 + gimap-1.0.3/gimap/tests/testthat/test-normalize.R | 25 gimap-1.0.3/gimap/vignettes/example_qc_report.html |only gimap-1.0.3/gimap/vignettes/images/results_table.png |binary gimap-1.0.3/gimap/vignettes/quick-start.Rmd | 13 gimap-1.0.3/gimap/vignettes/timepoint-example.Rmd | 10 gimap-1.0.3/gimap/vignettes/treatment_example.Rmd | 6 60 files changed, 868 insertions(+), 438 deletions(-)
Title: Efficient Serialization of R Objects
Description: Streamlines and accelerates the process of saving and loading R objects, improving speed and compression compared to other methods. The package provides two compression formats: the 'qs2' format, which uses R serialization via the C API while optimizing compression and disk I/O, and the 'qdata' format, featuring custom serialization for slightly faster performance and better compression. Additionally, the 'qs2' format can be directly converted to the standard 'RDS' format, ensuring long-term compatibility with future versions of R.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] ,
Facebook, Inc. [cph] ,
Reichardt Tino [ctb, cph] ,
Skibinski Przemyslaw [ctb, cph] ,
Mori Yuta [ctb, cph] ,
Francesc Alted [ctb, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs2 versions 0.1.4 dated 2024-12-12 and 0.1.5 dated 2025-03-07
ChangeLog | 6 + DESCRIPTION | 8 +- MD5 | 57 ++++++++-------- NAMESPACE | 2 R/RcppExports.R | 66 ++++++++++++++++--- R/qopt.R |only R/qx_functions.R | 151 ++++++++++++++++++++++++-------------------- README.md | 36 ++++++++++ inst/doc/vignette.R | 4 + inst/doc/vignette.html | 25 +++++++ inst/doc/vignette.rmd | 34 +++++++++ inst/include/qs2_external.h | 49 ++++++++++++++ man/blosc_shuffle_raw.Rd | 2 man/qd_deserialize.Rd | 19 +++-- man/qd_read.Rd | 19 +++-- man/qd_save.Rd | 29 ++++---- man/qd_serialize.Rd | 28 ++++---- man/qopt.Rd |only man/qs_deserialize.Rd | 16 ++-- man/qs_read.Rd | 16 ++-- man/qs_save.Rd | 25 ++++--- man/qs_serialize.Rd | 24 ++++-- man/qx_dump.Rd | 6 - man/xxhash_raw.Rd | 6 - man/zstd_compress_bound.Rd | 2 man/zstd_compress_raw.Rd | 2 src/RcppExports.cpp | 136 +++++++++++++++++++++++++++++++++++++-- src/io/io_common.h | 2 src/qoptions.h |only src/qx_functions.cpp | 102 ++++++++++++++++------------- vignettes/vignette.rmd | 34 +++++++++ 31 files changed, 660 insertions(+), 246 deletions(-)
Title: Color Palettes, Colormaps, and Tools to Evaluate Them
Description: A comprehensive collection of color palettes, colormaps, and
tools to evaluate them. See Kovesi (2015) <doi:10.48550/arXiv.1509.03700>.
Author: Kevin Wright [aut, cre, cph]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between pals versions 1.9 dated 2024-07-16 and 1.10 dated 2025-03-07
DESCRIPTION | 10 ++--- MD5 | 10 ++--- NEWS.md | 6 ++- build/vignette.rds |binary inst/doc/bivariate_choropleths.html | 14 +++---- inst/doc/pals_examples.html | 70 ++++++++++++++++++------------------ 6 files changed, 57 insertions(+), 53 deletions(-)
Title: Analyzing Gene Tree Quartets under the Multi-Species Coalescent
Description: Methods for analyzing and using quartets displayed on a collection
of gene trees, primarily to make inferences about the species tree or network
under the multi-species coalescent model. These include quartet hypothesis tests
for the model, as developed by Mitchell et al. (2019) <doi:10.1214/19-EJS1576>,
simplex plots of quartet concordance factors as presented by Allman et al. (2020)
<doi:10.1101/2020.02.13.948083>, species tree inference methods based on quartet
distances of Rhodes (2019) <doi:10.1109/TCBB.2019.2917204> and Yourdkhani and
Rhodes (2019) <doi:10.1007/s11538-020-00773-4>, the NANUQ algorithm for inference
of level-1 species networks of Allman et al. (2019) <doi:10.1186/s13015-019-0159-2>,
the TINNIK algorithm for inference of the tree of blobs of an arbitrary
network of Allman et al.(2022) <doi:10.1007/s00285-022-01838-9>, and
NANUQ+ routines for resolving multifurcations in the tree of blobs to cycles as in
Allman et al.(2024) (forth [...truncated...]
Author: Elizabeth Allman [aut],
Hector Banos [aut],
Jonathan Mitchell [aut],
Kristina Wicke [aut],
John Rhodes [aut, cre]
Maintainer: John Rhodes <j.rhodes@alaska.edu>
Diff between MSCquartets versions 3.0 dated 2024-10-30 and 3.1 dated 2025-03-07
DESCRIPTION | 6 +++--- MD5 | 22 ++++++++++++---------- NAMESPACE | 1 + R/ToBtoLevel1.R | 14 ++------------ R/evonetMisc.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/NANUQplus.R | 8 ++++---- inst/doc/NANUQplus.Rmd | 2 +- inst/doc/NANUQplus.html | 18 +++++++++--------- inst/doc/TINNIK.html | 10 +++++----- man/suppressNetBinaryNodes.Rd |only vignettes/NANUQplus.Rmd | 2 +- 13 files changed, 38 insertions(+), 45 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] ,
Lennart Schneider [aut] ,
Bernd Bischl [aut] ,
Michel Lang [aut] ,
Sebastian Fischer [aut] ,
Susanne Dandl [aut],
Keno Mersmann [ctb],
Maximilian Muecke [ctb] ,
Lona Koers [ctb]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.7.1 dated 2024-11-14 and 0.7.2 dated 2025-03-07
DESCRIPTION | 35 + MD5 | 368 ++++++++++----------- NAMESPACE | 4 NEWS.md | 20 + R/Graph.R | 56 +-- R/GraphLearner.R | 2 R/LearnerAvg.R | 14 R/PipeOp.R | 144 ++++---- R/PipeOpADAS.R | 4 R/PipeOpBLSmote.R | 4 R/PipeOpBoxCox.R | 4 R/PipeOpBranch.R | 9 R/PipeOpChunk.R | 4 R/PipeOpClassBalancing.R | 5 R/PipeOpClassWeights.R | 5 R/PipeOpClassifAvg.R | 8 R/PipeOpColApply.R | 8 R/PipeOpColRoles.R | 133 +++++-- R/PipeOpCollapseFactors.R | 65 +++ R/PipeOpCopy.R | 19 - R/PipeOpDateFeatures.R | 13 R/PipeOpDecode.R |only R/PipeOpEncode.R | 6 R/PipeOpEncodeImpact.R | 6 R/PipeOpEncodeLmer.R | 11 R/PipeOpEncodePL.R |only R/PipeOpEnsemble.R | 8 R/PipeOpFeatureUnion.R | 8 R/PipeOpFilter.R | 5 R/PipeOpFixFactors.R | 4 R/PipeOpHistBin.R | 3 R/PipeOpICA.R | 3 R/PipeOpImpute.R | 12 R/PipeOpImputeConstant.R | 3 R/PipeOpImputeHist.R | 3 R/PipeOpImputeMean.R | 3 R/PipeOpImputeMedian.R | 3 R/PipeOpImputeMode.R | 5 R/PipeOpImputeOOR.R | 3 R/PipeOpImputeSample.R | 3 R/PipeOpKernelPCA.R | 7 R/PipeOpLearner.R | 7 R/PipeOpLearnerCV.R | 10 R/PipeOpLearnerPICVPlus.R | 18 - R/PipeOpLearnerQuantiles.R | 10 R/PipeOpMissingIndicators.R | 4 R/PipeOpModelMatrix.R | 3 R/PipeOpMutate.R | 4 R/PipeOpNMF.R | 8 R/PipeOpNOP.R | 8 R/PipeOpNearmiss.R | 2 R/PipeOpOVR.R | 1 R/PipeOpPCA.R | 3 R/PipeOpProxy.R | 7 R/PipeOpQuantileBin.R | 7 R/PipeOpRandomProjection.R | 3 R/PipeOpRegrAvg.R | 3 R/PipeOpRemoveConstants.R | 2 R/PipeOpRenameColumns.R | 10 R/PipeOpRowApply.R | 9 R/PipeOpScale.R | 6 R/PipeOpScaleRange.R | 3 R/PipeOpSelect.R | 3 R/PipeOpSmote.R | 2 R/PipeOpSmoteNC.R | 2 R/PipeOpSpatialSign.R | 4 R/PipeOpSubsample.R | 71 +++- R/PipeOpTaskPreproc.R | 83 ++-- R/PipeOpTextVectorizer.R | 100 ++--- R/PipeOpThreshold.R | 1 R/PipeOpTomek.R | 2 R/PipeOpTrafo.R | 75 ++-- R/PipeOpTuneThreshold.R | 3 R/PipeOpUnbranch.R | 7 R/PipeOpVtreat.R | 23 - R/PipeOpYeoJohnson.R | 3 R/bibentries.R | 29 + R/mlr_graphs.R | 1 R/mlr_pipeops.R | 27 + R/po.R | 4 R/ppl.R | 4 R/utils.R | 70 +++ inst/doc/extending.R | 76 ++-- man/Graph.Rd | 56 +-- man/PipeOp.Rd | 148 ++++---- man/PipeOpEncodePL.Rd |only man/PipeOpEnsemble.Rd | 12 man/PipeOpImpute.Rd | 16 man/PipeOpTargetTrafo.Rd | 46 +- man/PipeOpTaskPreproc.Rd | 44 +- man/PipeOpTaskPreprocSimple.Rd | 32 + man/mlr_learners_graph.Rd | 2 man/mlr_pipeops.Rd | 33 + man/mlr_pipeops_adas.Rd | 8 man/mlr_pipeops_blsmote.Rd | 12 man/mlr_pipeops_boxcox.Rd | 9 man/mlr_pipeops_branch.Rd | 12 man/mlr_pipeops_chunk.Rd | 8 man/mlr_pipeops_classbalancing.Rd | 8 man/mlr_pipeops_classifavg.Rd | 10 man/mlr_pipeops_classweights.Rd | 8 man/mlr_pipeops_colapply.Rd | 12 man/mlr_pipeops_collapsefactors.Rd | 48 ++ man/mlr_pipeops_colroles.Rd | 48 ++ man/mlr_pipeops_copy.Rd | 23 - man/mlr_pipeops_datefeatures.Rd | 18 - man/mlr_pipeops_decode.Rd |only man/mlr_pipeops_encode.Rd | 11 man/mlr_pipeops_encodeimpact.Rd | 12 man/mlr_pipeops_encodelmer.Rd | 17 man/mlr_pipeops_encodeplquantiles.Rd |only man/mlr_pipeops_encodepltree.Rd |only man/mlr_pipeops_featureunion.Rd | 12 man/mlr_pipeops_filter.Rd | 6 man/mlr_pipeops_fixfactors.Rd | 9 man/mlr_pipeops_histbin.Rd | 9 man/mlr_pipeops_ica.Rd | 9 man/mlr_pipeops_imputeconstant.Rd | 9 man/mlr_pipeops_imputehist.Rd | 9 man/mlr_pipeops_imputelearner.Rd | 4 man/mlr_pipeops_imputemean.Rd | 9 man/mlr_pipeops_imputemedian.Rd | 9 man/mlr_pipeops_imputemode.Rd | 9 man/mlr_pipeops_imputeoor.Rd | 9 man/mlr_pipeops_imputesample.Rd | 9 man/mlr_pipeops_kernelpca.Rd | 13 man/mlr_pipeops_learner.Rd | 10 man/mlr_pipeops_learner_cv.Rd | 10 man/mlr_pipeops_learner_pi_cvplus.Rd | 22 - man/mlr_pipeops_learner_quantiles.Rd | 14 man/mlr_pipeops_missind.Rd | 8 man/mlr_pipeops_modelmatrix.Rd | 9 man/mlr_pipeops_multiplicityexply.Rd | 4 man/mlr_pipeops_multiplicityimply.Rd | 4 man/mlr_pipeops_mutate.Rd | 6 man/mlr_pipeops_nearmiss.Rd | 6 man/mlr_pipeops_nmf.Rd | 14 man/mlr_pipeops_nop.Rd | 12 man/mlr_pipeops_ovrsplit.Rd | 4 man/mlr_pipeops_ovrunite.Rd | 4 man/mlr_pipeops_pca.Rd | 9 man/mlr_pipeops_proxy.Rd | 8 man/mlr_pipeops_quantilebin.Rd | 11 man/mlr_pipeops_randomprojection.Rd | 9 man/mlr_pipeops_randomresponse.Rd | 4 man/mlr_pipeops_regravg.Rd | 6 man/mlr_pipeops_removeconstants.Rd | 6 man/mlr_pipeops_renamecolumns.Rd | 14 man/mlr_pipeops_replicate.Rd | 4 man/mlr_pipeops_rowapply.Rd | 12 man/mlr_pipeops_scale.Rd | 11 man/mlr_pipeops_scalemaxabs.Rd | 4 man/mlr_pipeops_scalerange.Rd | 9 man/mlr_pipeops_select.Rd | 7 man/mlr_pipeops_smote.Rd | 6 man/mlr_pipeops_smotenc.Rd | 6 man/mlr_pipeops_spatialsign.Rd | 9 man/mlr_pipeops_subsample.Rd | 27 + man/mlr_pipeops_targetinvert.Rd | 12 man/mlr_pipeops_targetmutate.Rd | 6 man/mlr_pipeops_targettrafoscalerange.Rd | 9 man/mlr_pipeops_textvectorizer.Rd | 102 +++-- man/mlr_pipeops_threshold.Rd | 4 man/mlr_pipeops_tomek.Rd | 6 man/mlr_pipeops_tunethreshold.Rd | 4 man/mlr_pipeops_unbranch.Rd | 10 man/mlr_pipeops_updatetarget.Rd | 9 man/mlr_pipeops_vtreat.Rd | 13 man/mlr_pipeops_yeojohnson.Rd | 9 man/mlr_tasks_boston_housing.Rd | 3 tests/testthat/test_GraphLearner.R | 25 - tests/testthat/test_PipeOp.R | 12 tests/testthat/test_dictionary.R | 15 tests/testthat/test_multiplicities.R | 4 tests/testthat/test_parvals.R | 8 tests/testthat/test_pipeop_blsmote.R | 2 tests/testthat/test_pipeop_collapsefactors.R |only tests/testthat/test_pipeop_colroles.R | 97 ++++- tests/testthat/test_pipeop_decode.R |only tests/testthat/test_pipeop_encodepl.R |only tests/testthat/test_pipeop_learner.R | 6 tests/testthat/test_pipeop_learnerpicvplus.R | 1 tests/testthat/test_pipeop_subsample.R | 179 +++++++++- tests/testthat/test_pipeop_targetmutate.R | 70 ++- tests/testthat/test_pipeop_targettrafoscalerange.R | 10 tests/testthat/test_pipeop_task_preproc.R | 27 + tests/testthat/test_po.R | 8 tests/testthat/test_ppl.R | 10 tests/testthat/test_typecheck.R | 2 tests/testthat/test_utils.R |only 190 files changed, 2350 insertions(+), 1118 deletions(-)
Title: Isotopic Tracer Analysis Using MCMC
Description: Implements Bayesian models to analyze data from tracer addition
experiments. The implemented method was originally described in the article
"A New Method to Reconstruct Quantitative Food Webs and Nutrient Flows from
Isotope Tracer Addition Experiments" by López-Sepulcre et al. (2020)
<doi:10.1086/708546>.
Author: Andres Lopez-Sepulcre [aut] ,
Matthieu Bruneaux [aut, cre]
Maintainer: Matthieu Bruneaux <matthieu.bruneaux@gmail.com>
Diff between isotracer versions 1.1.7 dated 2024-11-04 and 1.1.8 dated 2025-03-07
DESCRIPTION | 6 MD5 | 106 +++++----- NEWS.md | 12 + data/aquarium_run.rda |binary inst/doc/case-study-collins-2016.Rmd | 2 inst/doc/case-study-collins-2016.html | 4 inst/doc/tutorial-010-quick-start.Rmd | 2 inst/doc/tutorial-010-quick-start.html | 4 inst/doc/tutorial-020-replication.Rmd | 2 inst/doc/tutorial-020-replication.html | 4 inst/doc/tutorial-030-steady-state-comps.Rmd | 2 inst/doc/tutorial-030-steady-state-comps.html | 4 inst/doc/tutorial-040-pulse-drip-events.Rmd | 2 inst/doc/tutorial-040-pulse-drip-events.html | 4 inst/doc/tutorial-050-fixed-effects.Rmd | 2 inst/doc/tutorial-050-fixed-effects.html | 4 inst/doc/tutorial-060-units-priors.Rmd | 2 inst/doc/tutorial-060-units-priors.html | 4 inst/doc/tutorial-070-prior-predictive-checks.Rmd | 2 inst/doc/tutorial-070-prior-predictive-checks.html | 4 inst/doc/tutorial-080-mcmc-output-format.Rmd | 2 inst/doc/tutorial-080-mcmc-output-format.html | 4 inst/doc/tutorial-090-post-run-analyses.Rmd | 2 inst/doc/tutorial-090-post-run-analyses.html | 4 inst/doc/tutorial-100-posterior-predictive-checks.Rmd | 2 inst/doc/tutorial-100-posterior-predictive-checks.html | 14 - inst/doc/tutorial-110-derived-parameters.Rmd | 2 inst/doc/tutorial-110-derived-parameters.html | 4 inst/doc/tutorial-120-howto-simulations.Rmd | 2 inst/doc/tutorial-120-howto-simulations.html | 4 inst/doc/tutorial-130-parameter-identifiability.Rmd | 9 inst/doc/tutorial-130-parameter-identifiability.html | 45 ++-- vignettes/case-study-collins-2016.Rmd | 2 vignettes/figures/z-fig-100-unnamed-chunk-12-1.jpeg |binary vignettes/figures/z-fig-100-unnamed-chunk-12-2.jpeg |binary vignettes/figures/z-fig-100-unnamed-chunk-13-1.jpeg |binary vignettes/figures/z-fig-100-unnamed-chunk-14-1.jpeg |binary vignettes/figures/z-fig-100-unnamed-chunk-8-1.jpeg |binary vignettes/figures/z-fig-cs-li-2017-unnamed-chunk-26-1.jpeg |binary vignettes/figures/z-fig-cs-li-2017-unnamed-chunk-26-2.jpeg |binary vignettes/figures/z-fig-cs-mcroy-1970-unnamed-chunk-23-1.jpeg |binary vignettes/tutorial-010-quick-start.Rmd | 2 vignettes/tutorial-020-replication.Rmd | 2 vignettes/tutorial-030-steady-state-comps.Rmd | 2 vignettes/tutorial-040-pulse-drip-events.Rmd | 2 vignettes/tutorial-050-fixed-effects.Rmd | 2 vignettes/tutorial-060-units-priors.Rmd | 2 vignettes/tutorial-070-prior-predictive-checks.Rmd | 2 vignettes/tutorial-080-mcmc-output-format.Rmd | 2 vignettes/tutorial-090-post-run-analyses.Rmd | 2 vignettes/tutorial-100-posterior-predictive-checks.Rmd | 2 vignettes/tutorial-110-derived-parameters.Rmd | 2 vignettes/tutorial-120-howto-simulations.Rmd | 2 vignettes/tutorial-130-parameter-identifiability.Rmd | 9 54 files changed, 165 insertions(+), 136 deletions(-)
Title: Simulate, Evaluate, and Analyze Dose Finding Trials with
Bayesian MCPMod
Description: Bayesian MCPMod (Fleischer et al. (2022)
<doi:10.1002/pst.2193>) is an innovative method that improves the
traditional MCPMod by systematically incorporating historical data,
such as previous placebo group data. This R package offers functions
for simulating, analyzing, and evaluating Bayesian MCPMod trials with
normally distributed endpoints. It enables the assessment of trial
designs incorporating historical data across various true
dose-response relationships and sample sizes. Robust mixture prior
distributions, such as those derived with the Meta-Analytic-Predictive
approach (Schmidli et al. (2014) <doi:10.1111/biom.12242>), can be
specified for each dose group. Resulting mixture posterior
distributions are used in the Bayesian Multiple Comparison Procedure
and modeling steps. The modeling step also includes a weighted model
averaging approach (Pinheiro et al. (2014) <doi:10.1002/sim.6052>).
Estimated dose-response relationships can be bootstrapped and
visualiz [...truncated...]
Author: Boehringer Ingelheim Pharma GmbH & Co. KG [cph, fnd],
Stephan Wojciekowski [aut, cre],
Lars Andersen [aut],
Jonas Schick [ctb],
Sebastian Bossert [aut]
Maintainer: Stephan Wojciekowski <stephan.wojciekowski@boehringer-ingelheim.com>
Diff between BayesianMCPMod versions 1.0.2 dated 2025-02-06 and 1.1.0 dated 2025-03-07
BayesianMCPMod-1.0.2/BayesianMCPMod/R/Quarto |only BayesianMCPMod-1.1.0/BayesianMCPMod/DESCRIPTION | 16 BayesianMCPMod-1.1.0/BayesianMCPMod/MD5 | 86 - BayesianMCPMod-1.1.0/BayesianMCPMod/NAMESPACE | 2 BayesianMCPMod-1.1.0/BayesianMCPMod/NEWS.md | 15 BayesianMCPMod-1.1.0/BayesianMCPMod/R/BMCPMod.R | 566 ++++++---- BayesianMCPMod-1.1.0/BayesianMCPMod/R/bootstrapping.R | 183 ++- BayesianMCPMod-1.1.0/BayesianMCPMod/R/modeling.R | 245 +++- BayesianMCPMod-1.1.0/BayesianMCPMod/R/plot.R | 105 - BayesianMCPMod-1.1.0/BayesianMCPMod/R/posterior.R | 11 BayesianMCPMod-1.1.0/BayesianMCPMod/R/s3methods.R | 405 ++++--- BayesianMCPMod-1.1.0/BayesianMCPMod/inst/PSI_Poster_2024.pdf |only BayesianMCPMod-1.1.0/BayesianMCPMod/inst/doc/Simulation_Comparison.R | 22 BayesianMCPMod-1.1.0/BayesianMCPMod/inst/doc/Simulation_Comparison.Rmd | 23 BayesianMCPMod-1.1.0/BayesianMCPMod/inst/doc/Simulation_Comparison.html | 20 BayesianMCPMod-1.1.0/BayesianMCPMod/inst/doc/Simulation_Example.R | 15 BayesianMCPMod-1.1.0/BayesianMCPMod/inst/doc/Simulation_Example.Rmd | 45 BayesianMCPMod-1.1.0/BayesianMCPMod/inst/doc/Simulation_Example.html | 243 +++- BayesianMCPMod-1.1.0/BayesianMCPMod/inst/doc/analysis_normal.R | 49 BayesianMCPMod-1.1.0/BayesianMCPMod/inst/doc/analysis_normal.Rmd | 107 - BayesianMCPMod-1.1.0/BayesianMCPMod/inst/doc/analysis_normal.html | 114 +- BayesianMCPMod-1.1.0/BayesianMCPMod/man/assessDesign.Rd | 49 BayesianMCPMod-1.1.0/BayesianMCPMod/man/getBootstrapQuantiles.Rd | 25 BayesianMCPMod-1.1.0/BayesianMCPMod/man/getBootstrapSamples.Rd |only BayesianMCPMod-1.1.0/BayesianMCPMod/man/getContr.Rd | 3 BayesianMCPMod-1.1.0/BayesianMCPMod/man/getCritProb.Rd | 1 BayesianMCPMod-1.1.0/BayesianMCPMod/man/getMED.Rd |only BayesianMCPMod-1.1.0/BayesianMCPMod/man/getModelFits.Rd | 13 BayesianMCPMod-1.1.0/BayesianMCPMod/man/getPosterior.Rd | 3 BayesianMCPMod-1.1.0/BayesianMCPMod/man/performBayesianMCP.Rd | 4 BayesianMCPMod-1.1.0/BayesianMCPMod/man/performBayesianMCPMod.Rd | 32 BayesianMCPMod-1.1.0/BayesianMCPMod/man/plot.modelFits.Rd | 35 BayesianMCPMod-1.1.0/BayesianMCPMod/tests/testthat/test-bootstrapping.R | 2 BayesianMCPMod-1.1.0/BayesianMCPMod/tests/testthat/test-s3methods.R | 50 BayesianMCPMod-1.1.0/BayesianMCPMod/vignettes/Simulation_Comparison.Rmd | 23 BayesianMCPMod-1.1.0/BayesianMCPMod/vignettes/Simulation_Example.Rmd | 45 BayesianMCPMod-1.1.0/BayesianMCPMod/vignettes/analysis_normal.Rmd | 107 - 37 files changed, 1769 insertions(+), 895 deletions(-)
More information about BayesianMCPMod at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-31 1.3-42
2023-06-22 1.3-41
2021-10-28 1.3-4
2019-01-16 1.3-3
2018-01-13 1.3-0
2014-08-18 1.1-5
2013-11-22 1.1-4
2012-10-08 1.1-0
2012-06-26 1.0-7
2012-06-22 1.0-6
Title: Read Excel Files
Description: Import excel files into R. Supports '.xls' via the embedded
'libxls' C library <https://github.com/libxls/libxls> and '.xlsx' via
the embedded 'RapidXML' C++ library <https://rapidxml.sourceforge.net/>.
Works on Windows, Mac and Linux without external dependencies.
Author: Hadley Wickham [aut] ,
Jennifer Bryan [aut, cre] ,
Posit, PBC [cph, fnd] ,
Marcin Kalicinski [ctb, cph] ,
Komarov Valery [ctb, cph] ,
Christophe Leitienne [ctb, cph] ,
Bob Colbert [ctb, cph] ,
David Hoerl [ctb, cph] ,
Evan Miller [ctb, cph]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between readxl versions 1.4.4 dated 2025-02-27 and 1.4.5 dated 2025-03-07
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 21 +++++++++++++-------- src/libxls/xls.c | 15 +++++++++++---- src/libxls/xlsstruct.h | 30 ++++++++++++++++++++++++++++++ 5 files changed, 61 insertions(+), 19 deletions(-)
Title: A Flexible Class for Messy Dates
Description: Contains a set of tools for constructing and coercing
into and from the "mdate" class.
This date class implements ISO 8601-2:2019(E) and
allows regular dates to be annotated
to express unspecified date components,
approximate or uncertain date components,
date ranges, and sets of dates.
This is useful for describing and analysing temporal information,
whether historical or recent, where date precision may vary.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Nathan Werth [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between messydates versions 0.4.1 dated 2024-04-19 and 0.5.2 dated 2025-03-07
messydates-0.4.1/messydates/R/annotate.R |only messydates-0.4.1/messydates/R/battles.R |only messydates-0.4.1/messydates/R/class.R |only messydates-0.4.1/messydates/R/contract.R |only messydates-0.4.1/messydates/R/duration.R |only messydates-0.4.1/messydates/R/expand.R |only messydates-0.4.1/messydates/R/extract.R |only messydates-0.4.1/messydates/R/logical.R |only messydates-0.4.1/messydates/R/operate.R |only messydates-0.4.1/messydates/R/proportional.R |only messydates-0.4.1/messydates/R/report.R |only messydates-0.4.1/messydates/R/resolve.R |only messydates-0.4.1/messydates/R/set.R |only messydates-0.4.1/messydates/build |only messydates-0.4.1/messydates/inst/doc |only messydates-0.4.1/messydates/man/annotate.Rd |only messydates-0.4.1/messydates/man/class.Rd |only messydates-0.4.1/messydates/man/contract.Rd |only messydates-0.4.1/messydates/man/duration_class.Rd |only messydates-0.4.1/messydates/man/expand.Rd |only messydates-0.4.1/messydates/man/extract.Rd |only messydates-0.4.1/messydates/man/from_messydate.Rd |only messydates-0.4.1/messydates/man/logical_tests.Rd |only messydates-0.4.1/messydates/man/messydate.Rd |only messydates-0.4.1/messydates/man/mreport.Rd |only messydates-0.4.1/messydates/man/operate.Rd |only messydates-0.4.1/messydates/man/proportional.Rd |only messydates-0.4.1/messydates/man/resolve.Rd |only messydates-0.4.1/messydates/man/set.Rd |only messydates-0.4.1/messydates/tests/testthat/test-annotate.R |only messydates-0.4.1/messydates/tests/testthat/test-class.R |only messydates-0.4.1/messydates/tests/testthat/test-coerce-from.R |only messydates-0.4.1/messydates/tests/testthat/test-coerce-to.R |only messydates-0.4.1/messydates/tests/testthat/test-contract.R |only messydates-0.4.1/messydates/tests/testthat/test-expand.R |only messydates-0.4.1/messydates/tests/testthat/test-extract.R |only messydates-0.4.1/messydates/tests/testthat/test-logical.R |only messydates-0.4.1/messydates/tests/testthat/test-messydate-make.R |only messydates-0.4.1/messydates/tests/testthat/test-operate.R |only messydates-0.4.1/messydates/tests/testthat/test-proportional.R |only messydates-0.4.1/messydates/tests/testthat/test-report.R |only messydates-0.4.1/messydates/tests/testthat/test-resolve.R |only messydates-0.4.1/messydates/tests/testthat/test-set.R |only messydates-0.4.1/messydates/tests/testthat/test_duration.R |only messydates-0.4.1/messydates/vignettes |only messydates-0.5.2/messydates/DESCRIPTION | 27 messydates-0.5.2/messydates/MD5 | 109 - messydates-0.5.2/messydates/NAMESPACE | 36 messydates-0.5.2/messydates/NEWS.md | 63 + messydates-0.5.2/messydates/R/class_duration.R |only messydates-0.5.2/messydates/R/class_mdate.R |only messydates-0.5.2/messydates/R/class_methods.R |only messydates-0.5.2/messydates/R/coerce_extrema.R |only messydates-0.5.2/messydates/R/coerce_from_messydate.R | 119 +- messydates-0.5.2/messydates/R/coerce_tendency.R |only messydates-0.5.2/messydates/R/coerce_to_messydate.R | 588 ++++------ messydates-0.5.2/messydates/R/component_annotate.R |only messydates-0.5.2/messydates/R/component_extract.R |only messydates-0.5.2/messydates/R/convert_contract.R |only messydates-0.5.2/messydates/R/convert_expand.R |only messydates-0.5.2/messydates/R/convert_sequence.R |only messydates-0.5.2/messydates/R/data_battles.R |only messydates-0.5.2/messydates/R/operate_arithmetic.R |only messydates-0.5.2/messydates/R/operate_inequalities.R |only messydates-0.5.2/messydates/R/operate_proportional.R |only messydates-0.5.2/messydates/R/operate_set.R |only messydates-0.5.2/messydates/R/operate_statements.R |only messydates-0.5.2/messydates/README.md | 88 - messydates-0.5.2/messydates/man/battles.Rd | 14 messydates-0.5.2/messydates/man/class_create.Rd |only messydates-0.5.2/messydates/man/class_duration.Rd |only messydates-0.5.2/messydates/man/class_make.Rd |only messydates-0.5.2/messydates/man/coerce_extrema.Rd |only messydates-0.5.2/messydates/man/coerce_from.Rd |only messydates-0.5.2/messydates/man/coerce_tendency.Rd |only messydates-0.5.2/messydates/man/coerce_to.Rd |only messydates-0.5.2/messydates/man/component_annotate.Rd |only messydates-0.5.2/messydates/man/component_extract.Rd |only messydates-0.5.2/messydates/man/convert_contract.Rd |only messydates-0.5.2/messydates/man/convert_expand.Rd |only messydates-0.5.2/messydates/man/convert_sequence.Rd |only messydates-0.5.2/messydates/man/operate_arithmetic.Rd |only messydates-0.5.2/messydates/man/operate_inequalities.Rd |only messydates-0.5.2/messydates/man/operate_proportional.Rd |only messydates-0.5.2/messydates/man/operate_set.Rd |only messydates-0.5.2/messydates/man/operate_statements.Rd |only messydates-0.5.2/messydates/tests/testthat/test-class_create.R |only messydates-0.5.2/messydates/tests/testthat/test-class_duration.R |only messydates-0.5.2/messydates/tests/testthat/test-class_make.R |only messydates-0.5.2/messydates/tests/testthat/test-coerce_from.R |only messydates-0.5.2/messydates/tests/testthat/test-coerce_resolve.R |only messydates-0.5.2/messydates/tests/testthat/test-coerce_to.R |only messydates-0.5.2/messydates/tests/testthat/test-component_annotate.R |only messydates-0.5.2/messydates/tests/testthat/test-component_extract.R |only messydates-0.5.2/messydates/tests/testthat/test-convert_contract.R |only messydates-0.5.2/messydates/tests/testthat/test-convert_expand.R |only messydates-0.5.2/messydates/tests/testthat/test-operate_arithmetic.R |only messydates-0.5.2/messydates/tests/testthat/test-operate_operators.R |only messydates-0.5.2/messydates/tests/testthat/test-operate_proportional.R |only messydates-0.5.2/messydates/tests/testthat/test-operate_set.R |only messydates-0.5.2/messydates/tests/testthat/test-operate_statements.R |only 101 files changed, 558 insertions(+), 486 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') Driver Manager
Description: Provides a developer-facing interface to 'Arrow' Database
Connectivity ('ADBC') for the purposes of driver development, driver
testing, and building high-level database interfaces for users. 'ADBC'
<https://arrow.apache.org/adbc/> is an API standard for database access
libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcdrivermanager versions 0.16.0 dated 2025-01-22 and 0.17.0 dated 2025-03-07
DESCRIPTION | 6 +- MD5 | 24 +++++------ src/c/driver/framework/objects.cc | 1 src/c/driver/postgresql/database.cc | 1 src/c/driver/postgresql/error.cc | 2 src/c/driver/postgresql/result_helper.cc | 2 src/c/driver/postgresql/statement.cc | 1 src/c/driver/sqlite/sqlite.cc | 9 +++- src/c/include/arrow-adbc/adbc.h | 52 +++++++++++++++++++++++++ src/c/validation/adbc_validation_connection.cc | 4 + src/c/validation/adbc_validation_statement.cc | 3 + src/c/validation/adbc_validation_util.cc | 5 ++ src/driver_test.cc | 1 13 files changed, 93 insertions(+), 18 deletions(-)
More information about adbcdrivermanager at CRAN
Permanent link
Title: 'Rcpp' Bindings for the 'simdjson' Header-Only Library for
'JSON' Parsing
Description: The 'JSON' format is ubiquitous for data interchange, and the
'simdjson' library written by Daniel Lemire (and many contributors) provides a
high-performance parser for these files which by relying on parallel 'SIMD'
instruction manages to parse these files as faster than disk speed. See the
<doi:10.48550/arXiv.1902.08318> paper for more details about 'simdjson'. This
package parses 'JSON' from string, file, or remote URLs under a variety of
settings.
Author: Dirk Eddelbuettel [aut, cre] ,
Brendan Knapp [aut] ,
Daniel Lemire [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSimdJson versions 0.1.12 dated 2024-07-07 and 0.1.13 dated 2025-03-07
RcppSimdJson-0.1.12/RcppSimdJson/demo |only RcppSimdJson-0.1.13/RcppSimdJson/ChangeLog | 32 RcppSimdJson-0.1.13/RcppSimdJson/DESCRIPTION | 20 RcppSimdJson-0.1.13/RcppSimdJson/MD5 | 21 RcppSimdJson-0.1.13/RcppSimdJson/README.md | 10 RcppSimdJson-0.1.13/RcppSimdJson/build/partial.rdb |binary RcppSimdJson-0.1.13/RcppSimdJson/inst/NEWS.Rd | 14 RcppSimdJson-0.1.13/RcppSimdJson/inst/examples |only RcppSimdJson-0.1.13/RcppSimdJson/inst/include/RcppSimdJson/deserialize/scalar.hpp | 20 RcppSimdJson-0.1.13/RcppSimdJson/inst/include/simdjson.cpp | 394 RcppSimdJson-0.1.13/RcppSimdJson/inst/include/simdjson.h |16307 ++++++---- 11 files changed, 11093 insertions(+), 5725 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc]
,
Christoph Burow [aut, trl, dtc]
,
Michael Dietze [aut] ,
Margret C. Fuchs [aut] ,
Christoph Schmidt [aut] ,
Manfred Fischer [aut, trl],
Johannes Friedrich [aut] ,
Norbert Mercier [aut] ,
Rachel K. Smedley [ct [...truncated...]
Maintainer: Sebastian Kreutzer <maintainer_luminescence@r-luminescence.org>
Diff between Luminescence versions 1.0.0 dated 2025-02-21 and 1.0.1 dated 2025-03-07
DESCRIPTION | 8 MD5 | 410 +++++++++++------------ NEWS.md | 77 ++++ R/RLum-class.R | 11 R/RLum.Analysis-class.R | 42 +- R/Risoe.BINfileData-class.R | 6 R/analyse_Al2O3C_CrossTalk.R | 2 R/analyse_FadingMeasurement.R | 18 - R/analyse_baSAR.R | 4 R/analyse_pIRIRSequence.R | 30 + R/calc_CosmicDoseRate.R | 27 - R/calc_FadingCorr.R | 46 +- R/calc_FastRatio.R | 2 R/calc_MinDose.R | 8 R/extract_IrradiationTimes.R | 2 R/fit_SurfaceExposure.R | 2 R/github.R | 4 R/internals_Thermochronometry.R | 12 R/methods_RLum.R | 86 ++-- R/plot_AbanicoPlot.R | 15 R/plot_DRCSummary.R | 4 R/plot_RLum.Analysis.R | 4 R/plot_RLum.Data.Spectrum.R | 14 R/read_BIN2R.R | 3 R/read_Daybreak2R.R | 3 R/read_HeliosOSL2R.R | 2 R/read_SPE2R.R | 2 R/read_TIFF2R.R | 2 R/read_XSYG2R.R | 4 R/use_DRAC.R | 1 R/write_R2BIN.R | 24 - README.md | 5 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/crosstalk.Rmd | 2 inst/doc/crosstalk.html | 60 +-- man/Analyse_SAR.OSLdata.Rd | 2 man/GitHub-API.Rd | 2 man/RLum-class.Rd | 2 man/RLum.Analysis-class.Rd | 2 man/RLum.Data-class.Rd | 2 man/RLum.Data.Curve-class.Rd | 2 man/RLum.Data.Image-class.Rd | 2 man/RLum.Data.Spectrum-class.Rd | 2 man/RLum.Results-class.Rd | 2 man/Risoe.BINfileData-class.Rd | 2 man/Risoe.BINfileData2RLum.Analysis.Rd | 2 man/analyse_Al2O3C_CrossTalk.Rd | 2 man/analyse_Al2O3C_ITC.Rd | 2 man/analyse_Al2O3C_Measurement.Rd | 2 man/analyse_FadingMeasurement.Rd | 8 man/analyse_IRSAR.RF.Rd | 2 man/analyse_SAR.CWOSL.Rd | 2 man/analyse_SAR.TL.Rd | 2 man/analyse_baSAR.Rd | 2 man/analyse_pIRIRSequence.Rd | 6 man/analyse_portableOSL.Rd | 2 man/apply_CosmicRayRemoval.Rd | 2 man/apply_Crosstalk.Rd | 2 man/apply_EfficiencyCorrection.Rd | 2 man/bin_RLum.Data.Rd | 2 man/calc_AliquotSize.Rd | 2 man/calc_AverageDose.Rd | 2 man/calc_CentralDose.Rd | 2 man/calc_CobbleDoseRate.Rd | 2 man/calc_CommonDose.Rd | 2 man/calc_CosmicDoseRate.Rd | 4 man/calc_EED_Model.Rd | 2 man/calc_FadingCorr.Rd | 26 - man/calc_FastRatio.Rd | 2 man/calc_FiniteMixture.Rd | 2 man/calc_FuchsLang2001.Rd | 2 man/calc_HomogeneityTest.Rd | 2 man/calc_Huntley2006.Rd | 2 man/calc_IEU.Rd | 2 man/calc_Lamothe2003.Rd | 2 man/calc_MaxDose.Rd | 2 man/calc_MinDose.Rd | 2 man/calc_MoransI.Rd | 2 man/calc_OSLLxTxDecomposed.Rd | 2 man/calc_OSLLxTxRatio.Rd | 2 man/calc_SourceDoseRate.Rd | 2 man/calc_Statistics.Rd | 2 man/calc_TLLxTxRatio.Rd | 2 man/calc_ThermalLifetime.Rd | 2 man/calc_WodaFuchs2008.Rd | 2 man/calc_gSGC.Rd | 2 man/calc_gSGC_feldspar.Rd | 2 man/combine_De_Dr.Rd | 2 man/convert_Activity2Concentration.Rd | 2 man/convert_BIN2CSV.Rd | 2 man/convert_CW2pHMi.Rd | 2 man/convert_CW2pLM.Rd | 2 man/convert_CW2pLMi.Rd | 2 man/convert_CW2pPMi.Rd | 2 man/convert_Concentration2DoseRate.Rd | 2 man/convert_Daybreak2CSV.Rd | 2 man/convert_PSL2CSV.Rd | 2 man/convert_PSL2Risoe.BINfileData.Rd | 2 man/convert_RLum2Risoe.BINfileData.Rd | 2 man/convert_SG2MG.Rd | 2 man/convert_Second2Gray.Rd | 2 man/convert_Wavelength2Energy.Rd | 2 man/convert_XSYG2CSV.Rd | 2 man/extract_IrradiationTimes.Rd | 2 man/extract_ROI.Rd | 2 man/fit_CWCurve.Rd | 2 man/fit_DoseResponseCurve.Rd | 2 man/fit_EmissionSpectra.Rd | 2 man/fit_LMCurve.Rd | 2 man/fit_OSLLifeTimes.Rd | 2 man/fit_SurfaceExposure.Rd | 2 man/fit_ThermalQuenching.Rd | 2 man/get_Layout.Rd | 2 man/get_Quote.Rd | 2 man/get_RLum.Rd | 2 man/get_Risoe.BINfileData.Rd | 2 man/get_rightAnswer.Rd | 2 man/import_Data.Rd | 2 man/length_RLum.Rd | 2 man/melt_RLum.Rd | 2 man/merge_RLum.Analysis.Rd | 2 man/merge_RLum.Data.Curve.Rd | 2 man/merge_RLum.Data.Spectrum.Rd | 2 man/merge_RLum.Rd | 2 man/merge_RLum.Results.Rd | 2 man/merge_Risoe.BINfileData.Rd | 2 man/metadata.Rd | 2 man/names_RLum.Rd | 2 man/plot_AbanicoPlot.Rd | 2 man/plot_DRCSummary.Rd | 2 man/plot_DRTResults.Rd | 2 man/plot_DetPlot.Rd | 2 man/plot_DoseResponseCurve.Rd | 2 man/plot_FilterCombinations.Rd | 2 man/plot_GrowthCurve.Rd | 2 man/plot_Histogram.Rd | 2 man/plot_KDE.Rd | 2 man/plot_MoranScatterplot.Rd | 2 man/plot_NRt.Rd | 2 man/plot_OSLAgeSummary.Rd | 2 man/plot_RLum.Analysis.Rd | 2 man/plot_RLum.Data.Curve.Rd | 2 man/plot_RLum.Data.Image.Rd | 2 man/plot_RLum.Data.Spectrum.Rd | 14 man/plot_RLum.Rd | 2 man/plot_RLum.Results.Rd | 2 man/plot_ROI.Rd | 2 man/plot_RadialPlot.Rd | 2 man/plot_Risoe.BINfileData.Rd | 2 man/plot_SingleGrainDisc.Rd | 2 man/plot_ViolinPlot.Rd | 2 man/read_BIN2R.Rd | 2 man/read_Daybreak2R.Rd | 2 man/read_HeliosOSL2R.Rd | 2 man/read_PSL2R.Rd | 2 man/read_RF2R.Rd | 2 man/read_SPE2R.Rd | 2 man/read_TIFF2R.Rd | 2 man/read_XSYG2R.Rd | 2 man/replicate_RLum.Rd | 2 man/report_RLum.Rd | 2 man/sTeve.Rd | 2 man/scale_GammaDose.Rd | 2 man/set_RLum.Rd | 2 man/set_Risoe.BINfileData.Rd | 2 man/smooth_RLum.Rd | 2 man/sort_RLum.Rd | 2 man/structure_RLum.Rd | 2 man/subset_SingleGrainData.Rd | 2 man/template_DRAC.Rd | 2 man/trim_RLum.Data.Rd | 2 man/tune_Data.Rd | 2 man/use_DRAC.Rd | 2 man/verify_SingleGrainData.Rd | 2 man/view.Rd | 2 man/write_R2BIN.Rd | 2 man/write_R2TIFF.Rd | 2 man/write_RLum2CSV.Rd | 2 tests/testthat/_snaps/calc_CosmicDoseRate.md | 414 +++++++++++++++++++++++- tests/testthat/_snaps/calc_FadingCorr.md | 142 ++++++++ tests/testthat/test_RLum.Analysis-class.R | 14 tests/testthat/test_Risoe.BINfileData-class.R | 6 tests/testthat/test_analyse_FadingMeasurement.R | 12 tests/testthat/test_analyse_baSAR.R | 9 tests/testthat/test_analyse_pIRIRSequence.R | 6 tests/testthat/test_calc_CosmicDoseRate.R | 36 +- tests/testthat/test_calc_FadingCorr.R | 23 + tests/testthat/test_calc_FastRatio.R | 5 tests/testthat/test_calc_MinDose.R | 29 + tests/testthat/test_convert_Daybreak2CSV.R | 3 tests/testthat/test_convert_XSYG2CSV.R | 3 tests/testthat/test_extract_IrradiationTimes.R | 2 tests/testthat/test_github.R | 4 tests/testthat/test_plot_AbanicoPlot.R | 15 tests/testthat/test_plot_DRCSummary.R | 6 tests/testthat/test_plot_DRTResults.R | 5 tests/testthat/test_plot_RLum.Data.Spectrum.R | 10 tests/testthat/test_read_BIN2R.R | 2 tests/testthat/test_read_Daybreak2R.R | 2 tests/testthat/test_read_HeliosOSL2R.R | 2 tests/testthat/test_read_SPE2R.R | 2 tests/testthat/test_read_TIFF2R.R | 2 tests/testthat/test_read_XSYG2R.R | 2 tests/testthat/test_use_DRAC.R | 2 vignettes/crosstalk.Rmd | 2 206 files changed, 1421 insertions(+), 616 deletions(-)
Title: Functions and Datasets for the Data Science Course at IBAW
Description: A collection of useful functions and datasets for the Data Science
Course at IBAW.
Author: Stefan Lanz [aut, cre]
Maintainer: Stefan Lanz <slanz1137@gmail.com>
Diff between ibawds versions 1.0.0 dated 2024-09-30 and 1.1.0 dated 2025-03-07
DESCRIPTION | 19 +++-- MD5 | 44 +++++++++---- NAMESPACE | 7 ++ R/checks.R |only R/cran_packages.R | 8 +- R/data.R | 27 ++++++++ R/install.R | 116 +++++++++++++++++++++++++++++++++++- R/throw_dice.R |only README.md | 15 ++++ build/partial.rdb |binary data/cran_history.rda |binary data/dice_data.rda |only inst/WORDLIST | 5 + inst/extdata/evaluation_wordlist |only inst/extdata/slides_wordlist |only man/check_lecture_packages.Rd |only man/check_links_in_file.Rd |only man/check_links_in_slides.Rd |only man/check_url.Rd |only man/cran_history.Rd | 2 man/dice_data.Rd |only man/ibawds-package.Rd | 1 man/spell_check_evaluation.Rd |only man/throw_dice.Rd |only tests/testthat/data |only tests/testthat/test-checks.R |only tests/testthat/test-cran_packages.R | 25 ++++++- tests/testthat/test-install.R | 60 +++++++++++++++++- tests/testthat/test-throw_dice.R |only 29 files changed, 292 insertions(+), 37 deletions(-)
Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating
grouped date classes.
Author: Tim Taylor [aut, cre]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between grates versions 1.4.1 dated 2025-02-05 and 1.4.2 dated 2025-03-07
grates-1.4.1/grates/R/epiweek.R |only grates-1.4.1/grates/R/int_period.R |only grates-1.4.1/grates/R/isoweek.R |only grates-1.4.1/grates/R/month.R |only grates-1.4.1/grates/R/period.R |only grates-1.4.1/grates/R/scale-epiweek.R |only grates-1.4.1/grates/R/scale-int_period.R |only grates-1.4.1/grates/R/scale-isoweek.R |only grates-1.4.1/grates/R/scale-month.R |only grates-1.4.1/grates/R/scale-period.R |only grates-1.4.1/grates/R/scale-year.R |only grates-1.4.1/grates/R/scale-yearmonth.R |only grates-1.4.1/grates/R/scale-yearquarter.R |only grates-1.4.1/grates/R/scale-yearweek.R |only grates-1.4.1/grates/R/utils-general.R |only grates-1.4.1/grates/R/utils-month.R |only grates-1.4.1/grates/R/year.R |only grates-1.4.1/grates/R/yearmonth.R |only grates-1.4.1/grates/R/yearquarter.R |only grates-1.4.1/grates/R/yearweek.R |only grates-1.4.1/grates/man/as_epiweek.Rd |only grates-1.4.1/grates/man/as_int_period.Rd |only grates-1.4.1/grates/man/as_isoweek.Rd |only grates-1.4.1/grates/man/as_month.Rd |only grates-1.4.1/grates/man/as_period.Rd |only grates-1.4.1/grates/man/as_year.Rd |only grates-1.4.1/grates/man/as_yearmonth.Rd |only grates-1.4.1/grates/man/as_yearquarter.Rd |only grates-1.4.1/grates/man/as_yearweek.Rd |only grates-1.4.1/grates/man/epiweek.Rd |only grates-1.4.1/grates/man/isoweek.Rd |only grates-1.4.1/grates/man/new_epiweek.Rd |only grates-1.4.1/grates/man/new_int_period.Rd |only grates-1.4.1/grates/man/new_isoweek.Rd |only grates-1.4.1/grates/man/new_month.Rd |only grates-1.4.1/grates/man/new_period.Rd |only grates-1.4.1/grates/man/new_yearmonth.Rd |only grates-1.4.1/grates/man/new_yearquarter.Rd |only grates-1.4.1/grates/man/new_yearweek.Rd |only grates-1.4.1/grates/man/print.grates_int_period.Rd |only grates-1.4.1/grates/man/print.grates_year.Rd |only grates-1.4.1/grates/man/print.grates_yearquarter.Rd |only grates-1.4.1/grates/man/year.Rd |only grates-1.4.1/grates/man/yearmonth.Rd |only grates-1.4.1/grates/man/yearquarter.Rd |only grates-1.4.1/grates/man/yearweek.Rd |only grates-1.4.2/grates/DESCRIPTION | 13 grates-1.4.2/grates/MD5 | 121 - grates-1.4.2/grates/NEWS.md | 5 grates-1.4.2/grates/R/boundaries.R | 32 grates-1.4.2/grates/R/during.R |only grates-1.4.2/grates/R/epiweek-class.R |only grates-1.4.2/grates/R/epiweek-scale.R |only grates-1.4.2/grates/R/int_period-class.R |only grates-1.4.2/grates/R/int_period-scale.R |only grates-1.4.2/grates/R/isoweek-class.R |only grates-1.4.2/grates/R/isoweek-scale.R |only grates-1.4.2/grates/R/month-class.R |only grates-1.4.2/grates/R/month-scale.R |only grates-1.4.2/grates/R/month-utils.R |only grates-1.4.2/grates/R/period-class.R |only grates-1.4.2/grates/R/period-scale.R |only grates-1.4.2/grates/R/utils.R |only grates-1.4.2/grates/R/year-class.R |only grates-1.4.2/grates/R/year-scale.R |only grates-1.4.2/grates/R/yearmonth-class.R |only grates-1.4.2/grates/R/yearmonth-scale.R |only grates-1.4.2/grates/R/yearquarter-class.R |only grates-1.4.2/grates/R/yearquarter-scale.R |only grates-1.4.2/grates/R/yearweek-class.R |only grates-1.4.2/grates/R/yearweek-scale.R |only grates-1.4.2/grates/README.md | 2 grates-1.4.2/grates/build/vignette.rds |binary grates-1.4.2/grates/inst/doc/grates.R | 150 - grates-1.4.2/grates/inst/doc/grates.Rmd | 398 ++- grates-1.4.2/grates/inst/doc/grates.html | 1828 ++++++++++++++---- grates-1.4.2/grates/man/boundaries.Rd | 21 grates-1.4.2/grates/man/epiweek_class.Rd |only grates-1.4.2/grates/man/grapes-during-grapes.Rd |only grates-1.4.2/grates/man/int_period_class.Rd |only grates-1.4.2/grates/man/isoweek_class.Rd |only grates-1.4.2/grates/man/month_class.Rd |only grates-1.4.2/grates/man/period_class.Rd |only grates-1.4.2/grates/man/print.grates_month.Rd | 11 grates-1.4.2/grates/man/print.grates_period.Rd | 2 grates-1.4.2/grates/man/print.grates_yearmonth.Rd | 15 grates-1.4.2/grates/man/scale_x_grates_epiweek.Rd | 24 grates-1.4.2/grates/man/scale_x_grates_int_period.Rd | 7 grates-1.4.2/grates/man/scale_x_grates_isoweek.Rd | 24 grates-1.4.2/grates/man/scale_x_grates_month.Rd | 32 grates-1.4.2/grates/man/scale_x_grates_period.Rd | 37 grates-1.4.2/grates/man/scale_x_grates_year.Rd | 27 grates-1.4.2/grates/man/scale_x_grates_yearmonth.Rd | 4 grates-1.4.2/grates/man/scale_x_grates_yearquarter.Rd | 32 grates-1.4.2/grates/man/scale_x_grates_yearweek.Rd | 24 grates-1.4.2/grates/man/year_class.Rd |only grates-1.4.2/grates/man/yearmonth_class.Rd |only grates-1.4.2/grates/man/yearquarter_class.Rd |only grates-1.4.2/grates/man/yearweek_class.Rd |only grates-1.4.2/grates/vignettes/grates.Rmd | 398 ++- 100 files changed, 2275 insertions(+), 932 deletions(-)
Title: Wearable Accelerometer Data File Readers
Description: Reads data collected from wearable acceleratometers as used in sleep and physical activity research. Currently supports file formats: binary data from 'GENEActiv' <https://activinsights.com/>, .bin-format from GENEA devices (not for sale), and .cwa-format from 'Axivity' <https://axivity.com>. Further, it has functions for reading text files with epoch level aggregates from 'Actical', 'Fitbit', 'Actiwatch', 'ActiGraph', and 'PhilipsHealthBand'. Primarily designed to complement R package GGIR <https://CRAN.R-project.org/package=GGIR>.
Author: Vincent T van Hees [aut, cre],
Patrick Bos [aut] ,
Lena Kushleyeva [ctb],
Jing Hua Zhao [ctb],
Evgeny Mirkes [ctb],
Dan Jackson [ctb],
Jairo H Migueles [ctb],
Medical Research Council UK [cph, fnd],
Accelting [cph, fnd]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIRread versions 1.0.2 dated 2024-10-25 and 1.0.3 dated 2025-03-07
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ R/findStartData.R | 22 +++++++++++++--------- R/readActiwatchCount.R | 19 +++++++++++++++---- R/readPHBCount.R | 9 ++++++--- man/GGIRread-package.Rd | 4 ++-- tests/testthat/test_readActiwatchCount.R | 5 +++-- 8 files changed, 58 insertions(+), 31 deletions(-)
Title: Exploratory Graph Analysis – a Framework for Estimating the
Number of Dimensions in Multivariate Data using Network
Psychometrics
Description: Implements the Exploratory Graph Analysis (EGA) framework for dimensionality
and psychometric assessment. EGA estimates the number of dimensions in
psychological data using network estimation methods and community detection
algorithms. A bootstrap method is provided to assess the stability of dimensions
and items. Fit is evaluated using the Entropy Fit family of indices. Unique
Variable Analysis evaluates the extent to which items are locally dependent (or
redundant). Network loadings provide similar information to factor loadings and
can be used to compute network scores. A bootstrap and permutation approach are
available to assess configural and metric invariance. Hierarchical structures
can be detected using Hierarchical EGA. Time series and intensive longitudinal
data can be analyzed using Dynamic EGA, supporting individual, group, and
population level assessments.
Author: Hudson Golino [aut, cre] ,
Alexander Christensen [aut] ,
Robert Moulder [ctb] ,
Luis E. Garrido [ctb] ,
Laura Jamison [ctb] ,
Dingjing Shi [ctb]
Maintainer: Hudson Golino <hfg9s@virginia.edu>
Diff between EGAnet versions 2.1.0 dated 2024-11-09 and 2.2.0 dated 2025-03-07
DESCRIPTION | 22 +- MD5 | 42 ++-- NAMESPACE | 7 NEWS | 13 + R/EBICglasso.qgraph.R | 467 ++++++++++++++++++++++++++++++++++++----------- R/EGAnet.R | 2 R/EGM.R | 130 ++++++++++++- R/S3plots.R | 15 + R/bootEGA.R | 66 ++++-- R/color_palette_EGA.R | 4 R/community.detection.R | 37 +++ R/itemStability.R | 381 ++++++++++++++++++++++++-------------- R/net.loads.R | 37 ++- R/network.nonconvex.R |only R/simEGM.R | 6 R/tefi.compare.R |only data/boot.wmt.RData |binary inst/CITATION | 8 man/EBICglasso.qgraph.Rd | 20 +- man/EGAnet-plot.Rd | 15 + man/EGM.Rd | 4 man/bootEGA.Rd | 2 man/network.nonconvex.Rd |only man/tefi.compare.Rd |only 24 files changed, 954 insertions(+), 324 deletions(-)
More information about Certara.DarwinReporter at CRAN
Permanent link
Title: Spatial Analysis in Archaeology from Refitting Fragments
Description: Methods to analyse spatial units in archaeology from the relationships between refitting fragmented objects scattered in these units (e.g. stratigraphic layers). Graphs are used to model archaeological observations. The package is mainly based on the 'igraph' package for graph analysis. Functions can: 1) create, manipulate, and simulate fragmentation graphs, 2) measure the cohesion and admixture of archaeological spatial units, and 3) characterise the topology of a specific set of refitting relationships. Empirical datasets are provided as examples. Documentation about 'archeofrag' is provided by the vignette included in this package, by the accompanying scientific papers: Plutniak (2021, Journal of Archaeological Science, <doi:10.1016/j.jas.2021.105501>) and Plutniak (2022, Journal of Open Source Software, <doi:10.21105/joss.04335>). This package is complemented by a companion GUI application available at <https://analytics.huma-num.fr/Sebastien.Plutniak/archeofrag/> [...truncated...]
Author: Sebastien Plutniak [aut, cre]
Maintainer: Sebastien Plutniak <sebastien.plutniak@posteo.net>
Diff between archeofrag versions 1.0.0 dated 2024-12-17 and 1.1.0 dated 2025-03-07
archeofrag-1.0.0/archeofrag/data/Tai.RData |only archeofrag-1.0.0/archeofrag/man/Tai.Rd |only archeofrag-1.1.0/archeofrag/DESCRIPTION | 8 archeofrag-1.1.0/archeofrag/MD5 | 67 archeofrag-1.1.0/archeofrag/NAMESPACE | 10 archeofrag-1.1.0/archeofrag/NEWS.md | 17 archeofrag-1.1.0/archeofrag/R/frag.get.parameters.R | 78 archeofrag-1.1.0/archeofrag/R/frag.graph.plot.R | 4 archeofrag-1.1.0/archeofrag/R/frag.graph.reduce.R | 36 archeofrag-1.1.0/archeofrag/R/frag.layers.admixture.R | 15 archeofrag-1.1.0/archeofrag/R/frag.layers.cohesion.R | 16 archeofrag-1.1.0/archeofrag/R/frag.observer.failure.R | 2 archeofrag-1.1.0/archeofrag/R/frag.simul.compare.R | 9 archeofrag-1.1.0/archeofrag/R/frag.simul.process.R | 10 archeofrag-1.1.0/archeofrag/TODO | 19 archeofrag-1.1.0/archeofrag/build/vignette.rds |binary archeofrag-1.1.0/archeofrag/data/CuzoulCave.RData |only archeofrag-1.1.0/archeofrag/data/CuzoulSouth.RData |only archeofrag-1.1.0/archeofrag/data/TaiCave.RData |only archeofrag-1.1.0/archeofrag/data/TaiSouth.RData |only archeofrag-1.1.0/archeofrag/inst/doc/archeofrag-vignette.R | 1 archeofrag-1.1.0/archeofrag/inst/doc/archeofrag-vignette.Rmd | 3 archeofrag-1.1.0/archeofrag/inst/doc/archeofrag-vignette.html | 904 +++------- archeofrag-1.1.0/archeofrag/man/CuzoulCave.Rd |only archeofrag-1.1.0/archeofrag/man/CuzoulSouth.Rd |only archeofrag-1.1.0/archeofrag/man/FontJuvenal.Rd | 10 archeofrag-1.1.0/archeofrag/man/GrandeRivoire.Rd | 6 archeofrag-1.1.0/archeofrag/man/TaiCave.Rd |only archeofrag-1.1.0/archeofrag/man/TaiSouth.Rd |only archeofrag-1.1.0/archeofrag/man/frag.get.parameters.Rd | 26 archeofrag-1.1.0/archeofrag/man/frag.layers.cohesion.Rd | 4 archeofrag-1.1.0/archeofrag/man/frag.observer.failure.Rd | 2 archeofrag-1.1.0/archeofrag/man/frag.simul.compare.Rd | 1 archeofrag-1.1.0/archeofrag/man/frag.simul.process.Rd | 4 archeofrag-1.1.0/archeofrag/tests/testthat/test-frag.edges.weighting.R | 3 archeofrag-1.1.0/archeofrag/tests/testthat/test-frag.graph.reduce.R |only archeofrag-1.1.0/archeofrag/tests/testthat/test-frag.simul.compare.R | 11 archeofrag-1.1.0/archeofrag/tests/testthat/test-frag.simul.summarise.R | 2 archeofrag-1.1.0/archeofrag/tests/testthat/test.frag.get.parameters.R | 25 archeofrag-1.1.0/archeofrag/vignettes/archeofrag-vignette.Rmd | 3 40 files changed, 591 insertions(+), 705 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcsqlite versions 0.16.0 dated 2025-01-22 and 0.17.0 dated 2025-03-07
adbcsqlite-0.16.0/adbcsqlite/src/arrow-adbc |only adbcsqlite-0.16.0/adbcsqlite/src/common |only adbcsqlite-0.17.0/adbcsqlite/DESCRIPTION | 6 - adbcsqlite-0.17.0/adbcsqlite/MD5 | 26 ++--- adbcsqlite-0.17.0/adbcsqlite/src/c/driver/framework/objects.cc | 1 adbcsqlite-0.17.0/adbcsqlite/src/c/driver/postgresql/database.cc | 1 adbcsqlite-0.17.0/adbcsqlite/src/c/driver/postgresql/error.cc | 2 adbcsqlite-0.17.0/adbcsqlite/src/c/driver/postgresql/result_helper.cc | 2 adbcsqlite-0.17.0/adbcsqlite/src/c/driver/postgresql/statement.cc | 1 adbcsqlite-0.17.0/adbcsqlite/src/c/driver/sqlite/sqlite.cc | 9 + adbcsqlite-0.17.0/adbcsqlite/src/c/include/arrow-adbc/adbc.h | 52 ++++++++++ adbcsqlite-0.17.0/adbcsqlite/src/c/validation/adbc_validation_connection.cc | 4 adbcsqlite-0.17.0/adbcsqlite/src/c/validation/adbc_validation_statement.cc | 3 adbcsqlite-0.17.0/adbcsqlite/src/c/validation/adbc_validation_util.cc | 5 14 files changed, 91 insertions(+), 21 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.16.0 dated 2025-01-22 and 0.17.0 dated 2025-03-07
adbcpostgresql-0.16.0/adbcpostgresql/src/arrow-adbc |only adbcpostgresql-0.17.0/adbcpostgresql/DESCRIPTION | 6 - adbcpostgresql-0.17.0/adbcpostgresql/MD5 | 23 ++-- adbcpostgresql-0.17.0/adbcpostgresql/src/c/driver/framework/objects.cc | 1 adbcpostgresql-0.17.0/adbcpostgresql/src/c/driver/postgresql/database.cc | 1 adbcpostgresql-0.17.0/adbcpostgresql/src/c/driver/postgresql/error.cc | 2 adbcpostgresql-0.17.0/adbcpostgresql/src/c/driver/postgresql/result_helper.cc | 2 adbcpostgresql-0.17.0/adbcpostgresql/src/c/driver/postgresql/statement.cc | 1 adbcpostgresql-0.17.0/adbcpostgresql/src/c/driver/sqlite/sqlite.cc | 9 + adbcpostgresql-0.17.0/adbcpostgresql/src/c/include/arrow-adbc/adbc.h | 52 ++++++++++ adbcpostgresql-0.17.0/adbcpostgresql/src/c/validation/adbc_validation_connection.cc | 4 adbcpostgresql-0.17.0/adbcpostgresql/src/c/validation/adbc_validation_statement.cc | 3 adbcpostgresql-0.17.0/adbcpostgresql/src/c/validation/adbc_validation_util.cc | 5 13 files changed, 91 insertions(+), 18 deletions(-)
More information about adbcpostgresql at CRAN
Permanent link
Title: Detect Aberrant Behavior in Test Data
Description: Detect several types of aberrant behavior, including answer
copying, answer similarity, nonparametric misfit, parametric misfit,
preknowledge, rapid guessing, and test tampering.
Author: Kylie Gorney [aut, cph, cre] ,
Jiayi Deng [aut, cph]
Maintainer: Kylie Gorney <kgorney@msu.edu>
Diff between aberrance versions 0.2.0 dated 2025-02-07 and 0.2.1 dated 2025-03-07
DESCRIPTION | 11 +- MD5 | 21 +++-- NAMESPACE | 66 ++++++++--------- NEWS.md | 6 + R/RcppExports.R |only R/aberrance-package.R | 58 +++++++-------- R/checks.R | 192 +++++++++++++++++++++++++------------------------- R/compute.R | 45 ----------- R/detect-ac.R | 52 +++++++------ R/detect-as.R | 122 +++++++++++++++++-------------- R/detect-pm.R | 4 - src |only 12 files changed, 278 insertions(+), 299 deletions(-)
Title: Interface to the 'PubChem' Database for Chemical Data Retrieval
Description: Provides an interface to the 'PubChem' database via the PUG REST <https://pubchem.ncbi.nlm.nih.gov/docs/pug-rest> and
PUG View <https://pubchem.ncbi.nlm.nih.gov/docs/pug-view> services. This package allows users to automatically
access chemical and biological data from 'PubChem', including compounds, substances, assays, and various other data types.
Functions are available to retrieve data in different formats, perform searches, and access detailed annotations.
Author: Selcuk Korkmaz [aut, cre] ,
Bilge Eren Yamasan [aut] ,
Dincer Goksuluk [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between PubChemR versions 2.1.3 dated 2024-12-16 and 2.1.4 dated 2025-03-07
DESCRIPTION | 7 MD5 | 16 inst/doc/Enhancing_Chemical_Data_Access_with_PubChemR.html | 60 inst/doc/Exploring_Chemical_Data_with_PubChemR.R | 32 inst/doc/Exploring_Chemical_Data_with_PubChemR.html |11167 ++++++------ inst/doc/Working_with_PubChemR_to_Access_Chemical_Data.R | 6 inst/doc/Working_with_PubChemR_to_Access_Chemical_Data.html | 1423 - tests/testthat/test-get_aids.R | 129 tests/testthat/test-get_compounds.R | 202 9 files changed, 7251 insertions(+), 5791 deletions(-)
Title: Model Checking for High-Dimensional GLMs via Random Projections
Description: Provides methods for testing the goodness-of-fit
of generalized linear models (GLMs) using random projections. It is
specifically designed for high-dimensional scenarios where the number
of predictors substantially exceeds the sample size. The statistical
methodologies implemented in this package are detailed in the paper by
Wen Chen and Falong Tan (2024, <doi:10.48550/arXiv.2412.10721>).
Author: Wen Chen [aut, cre],
Jie Liu [aut],
Heng Peng [aut],
FaLong Tan [aut],
Lixing Zhu [aut]
Maintainer: Wen Chen <tlqdcw@gmail.com>
Diff between PLStests versions 0.1.0 dated 2025-01-14 and 0.1.1 dated 2025-03-07
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NAMESPACE | 30 +++++++++++++++--------------- NEWS.md |only R/PLStests.R | 4 ++-- man/PLStests.Rd | 2 +- 6 files changed, 26 insertions(+), 25 deletions(-)
Title: Mixture and Non Mixture Parametric Cure Models to Estimate Cure
Indicators
Description: Fits a variety of cure models using excess hazard modeling methodology such as the mixture model proposed by Phillips et al. (2002) <doi:10.1002/sim.1101> The Weibull distribution is used to represent the survival function of the uncured patients; Fits also non-mixture cure model such as the time-to-null excess hazard model proposed by Boussari et al. (2020) <doi:10.1111/biom.13361>.
Author: Juste Goungounga [aut, cre] ,
Judith Breaud [aut] ,
Olayide Boussari [aut] ,
Laura Botta [ctb] ,
Valerie Jooste [aut]
Maintainer: Juste Goungounga <juste.goungounga@ehesp.fr>
Diff between curesurv versions 0.1.1 dated 2024-09-17 and 0.1.2 dated 2025-03-07
DESCRIPTION | 10 + MD5 | 186 ++++++++++++++++++------------------- NEWS.md | 2 R/TTC_adtneh2.R | 2 R/TTC_ic_adtneh2.R | 2 R/TTC_ic_adtneh2_log.R | 2 R/TTC_ic_multneh.R | 2 R/TTC_ic_multneh_log.R | 2 R/TTC_multneh.R | 2 R/TTC_wei.R | 2 R/cumLexc_alphaweibull.R | 2 R/cumLexc_alphaweibull_topred.R | 2 R/curesurv-package.R | 4 R/curesurv.R | 2 R/dpttcdtheta_adtneh2.R | 2 R/dpttcdtheta_multneh.R | 2 R/dsndtheta_adtneh2.R | 2 R/dsndtheta_multneh.R | 2 R/exhaz_ic_wei.R | 3 R/exhaz_ic_wei_log.R | 4 R/exhaz_ic_wei_loglog.R | 4 R/pi_ic_wei.R | 2 R/plot.predCuresurv.R | 2 R/predcall_tneh.R | 2 R/predcall_wei.R | 2 R/predict.curesurv.R | 2 R/print.curesurv.R | 2 R/pt_cure_ic_adtneh2.R | 2 R/pt_cure_ic_adtneh2_loglog.R | 2 R/pt_cure_ic_multneh.R | 2 R/pt_cure_ic_multneh_loglog.R | 2 R/pt_cure_ic_wei.R | 2 R/sn_ic_adtneh2.R | 2 R/sn_ic_adtneh2_log.R | 2 R/sn_ic_adtneh2_loglog.R | 2 R/sn_ic_multneh.R | 2 R/sn_ic_multneh_log.R | 2 R/sn_ic_multneh_loglog.R | 2 R/summary.curesurv.R | 2 R/var_TTC_multneh.R | 2 R/var_TTC_tneh2.R | 2 R/varexhaz_adtneh2.R | 2 R/z_alpha.R | 2 R/z_riskpop.alpha.R | 2 R/z_tau.R | 2 build/vignette.rds |binary inst/CITATION | 33 +----- inst/doc/Vignette_tneh.html | 72 +++++++------- inst/doc/vignette_mixture.R | 2 inst/doc/vignette_mixture.Rmd | 2 inst/doc/vignette_mixture.html | 65 ++++++------ man/TTC_adtneh2.Rd | 2 man/TTC_ic_adtneh2.Rd | 2 man/TTC_ic_adtneh2_log.Rd | 2 man/TTC_ic_multneh.Rd | 2 man/TTC_ic_multneh_log.Rd | 2 man/TTC_multneh.Rd | 2 man/TTC_wei.Rd | 2 man/cumLexc_alphaweibull.Rd | 2 man/cumLexc_alphaweibull_topred.Rd | 2 man/curesurv-package.Rd | 4 man/curesurv.Rd | 2 man/dpttcdtheta_adtneh2.Rd | 2 man/dpttcdtheta_multneh.Rd | 2 man/dsndtheta_adtneh2.Rd | 2 man/dsndtheta_multneh.Rd | 2 man/exhaz_ic_wei.Rd | 2 man/exhaz_ic_wei_log.Rd | 2 man/exhaz_ic_wei_loglog.Rd | 2 man/pi_ic_wei.Rd | 2 man/plot.predCuresurv.Rd | 2 man/predcall_tneh.Rd | 2 man/predcall_wei.Rd | 2 man/predict.curesurv.Rd | 2 man/print.curesurv.Rd | 2 man/pt_cure_ic_adtneh2.Rd | 2 man/pt_cure_ic_adtneh2_loglog.Rd | 2 man/pt_cure_ic_multneh.Rd | 2 man/pt_cure_ic_multneh_loglog.Rd | 2 man/pt_cure_ic_wei.Rd | 2 man/sn_ic_adtneh2.Rd | 2 man/sn_ic_adtneh2_log.Rd | 2 man/sn_ic_adtneh2_loglog.Rd | 2 man/sn_ic_multneh.Rd | 2 man/sn_ic_multneh_log.Rd | 2 man/sn_ic_multneh_loglog.Rd | 2 man/summary.curesurv.Rd | 2 man/var_TTC_multneh.Rd | 2 man/var_TTC_tneh2.Rd | 2 man/varexhaz_adtneh2.Rd | 2 man/z_alpha.Rd | 2 man/z_riskpop.alpha.Rd | 2 man/z_tau.Rd | 2 vignettes/vignette_mixture.Rmd | 2 94 files changed, 270 insertions(+), 281 deletions(-)
More information about transformerForecasting at CRAN
Permanent link
Title: Output Results from 'rms' Models for Medical Journals
Description: This takes the output of models performed using the 'rms' package and
returns a dataframe with the results. This output is in the format required by medical
journals. For example for cox regression models, the hazard ratios, their 95%
confidence intervals, and p values will be provided. There are additional functions for outputs when the model included restricted
cubic spline (RCS) terms. Models using imputed data (eg from aregimpute()) and
fitted used fit.mult.impute() can also be processed. The dataframe which is returned can easily be turned into a publication ready table
with packages 'flextable' and 'officer'.
Author: Samuel Tingle [aut, cre],
Georgios Kourounis [aut]
Maintainer: Samuel Tingle <samjamestingle@gmail.com>
Diff between rmsMD versions 0.1.1 dated 2025-03-03 and 0.1.2 dated 2025-03-07
DESCRIPTION | 7 MD5 | 12 - build/vignette.rds |binary inst/doc/modelsummary_rms-vignette.R | 5 inst/doc/modelsummary_rms-vignette.Rmd | 19 -- inst/doc/modelsummary_rms-vignette.html | 273 +++++++++++++++----------------- vignettes/modelsummary_rms-vignette.Rmd | 19 -- 7 files changed, 152 insertions(+), 183 deletions(-)
Title: Fast Machine Learning Model Training and Evaluation
Description: Streamlines the training, evaluation, and comparison of multiple machine learning models with minimal code by providing
comprehensive data preprocessing and support for a wide range of algorithms with hyperparameter tuning.
It offers performance metrics and visualization tools to facilitate efficient and effective machine learning workflows.
Author: Selcuk Korkmaz [aut, cre] ,
Dincer Goksuluk [aut] ,
Eda Karaismailoglu [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between fastml versions 0.4.0 dated 2025-01-08 and 0.5.0 dated 2025-03-07
DESCRIPTION | 10 MD5 | 61 NAMESPACE | 461 ++--- R/evaluate_models.R | 189 -- R/fastexplain.R | 598 +++---- R/fastexplore.R | 3228 +++++++++++++++++++-------------------- R/fastml.R | 435 ++++- R/helper_functions.R | 1063 ++++++++++++ R/models.R | 898 +++++++--- R/sanitize.R | 138 - R/save_model.R | 48 R/summary.fastml_model.R | 513 +++--- R/train_models.R | 803 ++++----- README.md | 112 - man/availableMethods.Rd |only man/evaluate_models.Rd | 82 man/fastexplore.Rd | 270 +-- man/fastml.Rd | 277 +-- man/flatten_and_rename_models.Rd |only man/get_best_model_idx.Rd |only man/get_best_model_names.Rd |only man/get_best_workflows.Rd |only man/get_default_engine.Rd |only man/get_default_params.Rd |only man/get_default_tune_params.Rd |only man/get_engine_names.Rd |only man/get_model_engine_names.Rd |only man/load_model.Rd | 34 man/plot.fastml_model.Rd | 38 man/predict.fastml_model.Rd | 48 man/process_model.Rd |only man/sanitize.Rd | 56 man/save_model.Rd | 38 man/summary.fastml_model.Rd | 97 - man/train_models.Rd | 137 - tests/testthat.R | 24 tests/testthat/test-fastml.R | 149 - 37 files changed, 5705 insertions(+), 4102 deletions(-)
More information about facilityepimath at CRAN
Permanent link
Title: Cross-Validation for Model Selection
Description: Cross-validate one or multiple regression and classification models
and get relevant evaluation metrics in a tidy format. Validate the
best model on a test set and compare it to a baseline evaluation.
Alternatively, evaluate predictions from an external model. Currently
supports regression and classification (binary and multiclass).
Described in chp. 5 of Jeyaraman, B. P., Olsen, L. R.,
& Wambugu M. (2019, ISBN: 9781838550134).
Author: Ludvig Renbo Olsen [aut, cre] ,
Hugh Benjamin Zachariae [aut],
Indrajeet Patil [ctb] ,
Daniel Luedecke [ctb]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>
Diff between cvms versions 1.6.3 dated 2025-01-14 and 1.7.0 dated 2025-03-07
DESCRIPTION | 8 MD5 | 32 +- NEWS.md | 8 R/plot_confusion_matrix.R | 137 ++++---- R/plotting_utilities.R | 10 README.md | 160 +++++----- build/stage23.rdb |binary inst/doc/Creating_a_confusion_matrix.html | 4 inst/doc/available_metrics.html | 4 inst/doc/cross_validating_custom_functions.html | 8 inst/doc/evaluate_by_id.html | 4 inst/doc/picking_the_number_of_folds_for_cross-validation.html | 4 man/figures/README-unnamed-chunk-27-1.png |binary man/figures/README-unnamed-chunk-32-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/plot_confusion_matrix.Rd | 15 man/sum_tile_settings.Rd | 15 17 files changed, 228 insertions(+), 181 deletions(-)
Title: Analysis of Conflicting Claims
Description: The analysis of conflicting claims arises when an amount has
to be divided among a set of agents with claims that exceed what is
available. A rule is a way of selecting a division among the
claimants. This package computes the main rules introduced in the
literature from ancient times to the present. The inventory of rules
covers the proportional and the adjusted proportional rules, the
constrained equal awards and the constrained equal losses rules, the
constrained egalitarian, the Piniles’ and the minimal overlap rules,
the random arrival and the Talmud rules. Besides, the Dominguez and
Thomson and the average-of-awards rules are also included. All of
them can be found in the book by W. Thomson (2019), How to divide when
there isn't enough. From Aristotle, the Talmud, and Maimonides to the
axiomatics of resource allocation', except for the average-of-awards
rule, introduced by Mirás Calvo et al. (2022),
<doi:10.1007/s00355-022-01414-6>. In addition, graphical diagrams
allow t [...truncated...]
Author: Estela Sanchez Rodriguez [cre, aut]
,
Iago Nunez Lugilde [aut] ,
Miguel Angel Miras Calvo [aut]
,
Carmen Quinteiro Sandomingo [aut]
,
MCIN/AEI/10.13039/501100011033 [fnd]
Maintainer: Estela Sanchez Rodriguez <esanchez@uvigo.es>
Diff between ClaimsProblems versions 0.2.1 dated 2023-01-12 and 1.0.0 dated 2025-03-07
ClaimsProblems-0.2.1/ClaimsProblems/build |only ClaimsProblems-1.0.0/ClaimsProblems/DESCRIPTION | 78 ++++-- ClaimsProblems-1.0.0/ClaimsProblems/MD5 | 142 ++++++----- ClaimsProblems-1.0.0/ClaimsProblems/NAMESPACE | 5 ClaimsProblems-1.0.0/ClaimsProblems/NEWS.md |only ClaimsProblems-1.0.0/ClaimsProblems/R/AA.R | 150 +++++------- ClaimsProblems-1.0.0/ClaimsProblems/R/APRO.R | 40 +-- ClaimsProblems-1.0.0/ClaimsProblems/R/AV.R |only ClaimsProblems-1.0.0/ClaimsProblems/R/Bankruptcy.R |only ClaimsProblems-1.0.0/ClaimsProblems/R/CD.R | 21 - ClaimsProblems-1.0.0/ClaimsProblems/R/CE.R | 46 +-- ClaimsProblems-1.0.0/ClaimsProblems/R/CEA.R | 16 - ClaimsProblems-1.0.0/ClaimsProblems/R/CEL.R | 18 - ClaimsProblems-1.0.0/ClaimsProblems/R/CO2emissions.R |only ClaimsProblems-1.0.0/ClaimsProblems/R/DT.R | 30 +- ClaimsProblems-1.0.0/ClaimsProblems/R/MO.R | 52 ++-- ClaimsProblems-1.0.0/ClaimsProblems/R/PIN.R | 23 - ClaimsProblems-1.0.0/ClaimsProblems/R/PRO.R | 12 ClaimsProblems-1.0.0/ClaimsProblems/R/Peso.R |only ClaimsProblems-1.0.0/ClaimsProblems/R/RA.R | 34 +- ClaimsProblems-1.0.0/ClaimsProblems/R/RTalmud.R |only ClaimsProblems-1.0.0/ClaimsProblems/R/Talmud.R | 25 +- ClaimsProblems-1.0.0/ClaimsProblems/R/Universityfunds.R |only ClaimsProblems-1.0.0/ClaimsProblems/R/allrules.R | 39 +-- ClaimsProblems-1.0.0/ClaimsProblems/R/axioms.R |only ClaimsProblems-1.0.0/ClaimsProblems/R/coalitionalgame.R | 57 +--- ClaimsProblems-1.0.0/ClaimsProblems/R/cumawardscurve.R | 38 +-- ClaimsProblems-1.0.0/ClaimsProblems/R/deviationindex.R | 41 +-- ClaimsProblems-1.0.0/ClaimsProblems/R/dynamicplot.R | 35 +- ClaimsProblems-1.0.0/ClaimsProblems/R/giniindex.R | 27 +- ClaimsProblems-1.0.0/ClaimsProblems/R/indexgpath.R | 39 +-- ClaimsProblems-1.0.0/ClaimsProblems/R/indexpath.R | 2 ClaimsProblems-1.0.0/ClaimsProblems/R/lorenzcurve.R | 31 +- ClaimsProblems-1.0.0/ClaimsProblems/R/lorenzdominance.R | 37 +- ClaimsProblems-1.0.0/ClaimsProblems/R/pathawards.R | 14 - ClaimsProblems-1.0.0/ClaimsProblems/R/pathawards3.R | 13 - ClaimsProblems-1.0.0/ClaimsProblems/R/plotrule.R | 20 - ClaimsProblems-1.0.0/ClaimsProblems/R/problemdata.R | 28 +- ClaimsProblems-1.0.0/ClaimsProblems/R/schedrule.R | 17 - ClaimsProblems-1.0.0/ClaimsProblems/R/schedrules.R | 21 - ClaimsProblems-1.0.0/ClaimsProblems/R/setofawards.R | 35 +- ClaimsProblems-1.0.0/ClaimsProblems/R/verticalruleplot.R | 25 -- ClaimsProblems-1.0.0/ClaimsProblems/R/volume.R |only ClaimsProblems-1.0.0/ClaimsProblems/data |only ClaimsProblems-1.0.0/ClaimsProblems/man/AA.Rd | 40 +-- ClaimsProblems-1.0.0/ClaimsProblems/man/APRO.Rd | 42 +-- ClaimsProblems-1.0.0/ClaimsProblems/man/AV.Rd |only ClaimsProblems-1.0.0/ClaimsProblems/man/Bankruptcy.Rd |only ClaimsProblems-1.0.0/ClaimsProblems/man/CD.Rd | 21 - ClaimsProblems-1.0.0/ClaimsProblems/man/CE.Rd | 47 +-- ClaimsProblems-1.0.0/ClaimsProblems/man/CEA.Rd | 16 - ClaimsProblems-1.0.0/ClaimsProblems/man/CEL.Rd | 16 - ClaimsProblems-1.0.0/ClaimsProblems/man/CO2emissions.Rd |only ClaimsProblems-1.0.0/ClaimsProblems/man/DT.Rd | 30 +- ClaimsProblems-1.0.0/ClaimsProblems/man/MO.Rd | 47 +-- ClaimsProblems-1.0.0/ClaimsProblems/man/PIN.Rd | 23 - ClaimsProblems-1.0.0/ClaimsProblems/man/PRO.Rd | 12 ClaimsProblems-1.0.0/ClaimsProblems/man/RA.Rd | 35 +- ClaimsProblems-1.0.0/ClaimsProblems/man/RTalmud.Rd |only ClaimsProblems-1.0.0/ClaimsProblems/man/Talmud.Rd | 21 - ClaimsProblems-1.0.0/ClaimsProblems/man/Universityfunds.Rd |only ClaimsProblems-1.0.0/ClaimsProblems/man/allrules.Rd | 28 -- ClaimsProblems-1.0.0/ClaimsProblems/man/axioms.Rd |only ClaimsProblems-1.0.0/ClaimsProblems/man/coalitionalgame.Rd | 57 +--- ClaimsProblems-1.0.0/ClaimsProblems/man/cumawardscurve.Rd | 41 +-- ClaimsProblems-1.0.0/ClaimsProblems/man/deviationindex.Rd | 40 +-- ClaimsProblems-1.0.0/ClaimsProblems/man/dynamicplot.Rd | 33 +- ClaimsProblems-1.0.0/ClaimsProblems/man/giniindex.Rd | 27 +- ClaimsProblems-1.0.0/ClaimsProblems/man/indexgpath.Rd | 39 +-- ClaimsProblems-1.0.0/ClaimsProblems/man/lorenzcurve.Rd | 30 +- ClaimsProblems-1.0.0/ClaimsProblems/man/lorenzdominance.Rd | 37 +- ClaimsProblems-1.0.0/ClaimsProblems/man/pathawards.Rd | 12 ClaimsProblems-1.0.0/ClaimsProblems/man/pathawards3.Rd | 12 ClaimsProblems-1.0.0/ClaimsProblems/man/plotrule.Rd | 18 - ClaimsProblems-1.0.0/ClaimsProblems/man/problemdata.Rd | 28 +- ClaimsProblems-1.0.0/ClaimsProblems/man/schedrule.Rd | 16 - ClaimsProblems-1.0.0/ClaimsProblems/man/schedrules.Rd | 18 - ClaimsProblems-1.0.0/ClaimsProblems/man/setofawards.Rd | 35 +- ClaimsProblems-1.0.0/ClaimsProblems/man/verticalruleplot.Rd | 25 -- ClaimsProblems-1.0.0/ClaimsProblems/man/volume.Rd |only 80 files changed, 1011 insertions(+), 1046 deletions(-)
More information about ClaimsProblems at CRAN
Permanent link
Title: Modular Crop Growth Simulations
Description: A cross-platform representation of models as sets of equations
that facilitates modularity in model building and allows users to harness
modern techniques for numerical integration and data visualization.
Documentation is provided by several vignettes included in this package;
also see Lochocki et al. (2022) <doi:10.1093/insilicoplants/diac003>.
Author: Justin M. McGrath [cre, aut] ,
Edward B. Lochocki [aut] ,
Yufeng He [aut] ,
Scott W. Oswald [aut] ,
Scott Rohde [aut] ,
Deepak Jaiswal [aut] ,
Megan L. Matthews [aut] ,
Fernando E. Miguez [aut] ,
Stephen P. Long [aut] ,
Dan Wang [ctb],
David LeBauer [...truncated...]
Maintainer: Justin M. McGrath <jmcgrath@illinois.edu>
Diff between BioCro versions 3.1.3 dated 2024-04-30 and 3.2.0 dated 2025-03-07
BioCro-3.1.3/BioCro/src/module_library/c3EvapoTrans.cpp |only BioCro-3.1.3/BioCro/src/module_library/leaf_gbw_thornley.h |only BioCro-3.1.3/BioCro/tests/module_test_cases/BioCro_fake_solar.csv |only BioCro-3.1.3/BioCro/tests/module_test_cases/BioCro_leaf_gbw_thornley.csv |only BioCro-3.1.3/BioCro/tests/module_test_cases/BioCro_soil_type_selector.csv |only BioCro-3.1.3/BioCro/tests/testthat/crop_model_testing_helper_functions.R |only BioCro-3.2.0/BioCro/DESCRIPTION | 14 BioCro-3.2.0/BioCro/MD5 | 316 +++--- BioCro-3.2.0/BioCro/NAMESPACE | 5 BioCro-3.2.0/BioCro/NEWS.md | 228 +++- BioCro-3.2.0/BioCro/R/add_time_to_weather_data.R | 5 BioCro-3.2.0/BioCro/R/get_all.R | 4 BioCro-3.2.0/BioCro/R/input_checking_functions.R | 86 + BioCro-3.2.0/BioCro/R/model_testing.R |only BioCro-3.2.0/BioCro/R/module_creators.R | 2 BioCro-3.2.0/BioCro/R/module_paste.R | 2 BioCro-3.2.0/BioCro/R/module_testing.R | 35 BioCro-3.2.0/BioCro/R/module_write.R |only BioCro-3.2.0/BioCro/R/modules.R | 12 BioCro-3.2.0/BioCro/R/run_biocro.R | 75 + BioCro-3.2.0/BioCro/R/system_derivatives.R | 8 BioCro-3.2.0/BioCro/R/validate_dynamical_system_inputs.R | 10 BioCro-3.2.0/BioCro/README.md | 24 BioCro-3.2.0/BioCro/build/partial.rdb |binary BioCro-3.2.0/BioCro/build/vignette.rds |binary BioCro-3.2.0/BioCro/data/cmi_weather_data.rdata |binary BioCro-3.2.0/BioCro/data/default_ode_solvers.rda |binary BioCro-3.2.0/BioCro/data/miscanthus_x_giganteus.rda |binary BioCro-3.2.0/BioCro/data/soil_parameters.rda |binary BioCro-3.2.0/BioCro/data/soybean.rda |binary BioCro-3.2.0/BioCro/data/soybean_clock.rda |binary BioCro-3.2.0/BioCro/data/soybean_weather.rdata |binary BioCro-3.2.0/BioCro/data/willow.rda |binary BioCro-3.2.0/BioCro/inst/doc/BioCro.R | 1 BioCro-3.2.0/BioCro/inst/doc/BioCro.Rmd | 1 BioCro-3.2.0/BioCro/inst/doc/BioCro.html | 7 BioCro-3.2.0/BioCro/inst/extdata/get_soybean_weather_data.R |only BioCro-3.2.0/BioCro/inst/extdata/rounding_weather_values.R | 1 BioCro-3.2.0/BioCro/man/add_time_to_weather_data.Rd | 56 - BioCro-3.2.0/BioCro/man/cmi_soybean_weather_data.Rd | 8 BioCro-3.2.0/BioCro/man/compare_model_output.Rd |only BioCro-3.2.0/BioCro/man/model_test_case.Rd |only BioCro-3.2.0/BioCro/man/model_testing.Rd |only BioCro-3.2.0/BioCro/man/module_case_files.Rd | 5 BioCro-3.2.0/BioCro/man/module_testing.Rd | 3 BioCro-3.2.0/BioCro/man/module_write.Rd |only BioCro-3.2.0/BioCro/man/partial_application.Rd | 2 BioCro-3.2.0/BioCro/man/run_biocro.Rd | 17 BioCro-3.2.0/BioCro/man/run_model_test_cases.Rd |only BioCro-3.2.0/BioCro/man/soybean.Rd | 24 BioCro-3.2.0/BioCro/man/system_derivatives.Rd | 7 BioCro-3.2.0/BioCro/man/test_module.Rd | 7 BioCro-3.2.0/BioCro/man/test_module_library.Rd | 12 BioCro-3.2.0/BioCro/man/time_variable.rd |only BioCro-3.2.0/BioCro/man/update_stored_model_results.Rd |only BioCro-3.2.0/BioCro/src/R_system_derivatives.cpp | 2 BioCro-3.2.0/BioCro/src/inc/boost/concept/detail/general.hpp | 22 BioCro-3.2.0/BioCro/src/inc/boost/concept/usage.hpp | 10 BioCro-3.2.0/BioCro/src/inc/boost/graph/detail/adj_list_edge_iterator.hpp | 30 BioCro-3.2.0/BioCro/src/inc/boost/graph/detail/adjacency_list.hpp | 6 BioCro-3.2.0/BioCro/src/module_library/AuxBioCro.cpp | 355 ------- BioCro-3.2.0/BioCro/src/module_library/AuxBioCro.h | 61 - BioCro-3.2.0/BioCro/src/module_library/BioCro.h | 25 BioCro-3.2.0/BioCro/src/module_library/CanAC.cpp | 155 +-- BioCro-3.2.0/BioCro/src/module_library/CanAC.h | 71 - BioCro-3.2.0/BioCro/src/module_library/ball_berry.h | 2 BioCro-3.2.0/BioCro/src/module_library/ball_berry_gs.cpp | 8 BioCro-3.2.0/BioCro/src/module_library/boundary_layer_conductance.cpp |only BioCro-3.2.0/BioCro/src/module_library/boundary_layer_conductance.h |only BioCro-3.2.0/BioCro/src/module_library/c3CanAC.cpp | 208 ++-- BioCro-3.2.0/BioCro/src/module_library/c3CanAC.h | 82 - BioCro-3.2.0/BioCro/src/module_library/c3_assimilation.h | 179 ++- BioCro-3.2.0/BioCro/src/module_library/c3_canopy.cpp | 192 ++- BioCro-3.2.0/BioCro/src/module_library/c3_canopy.h | 178 ++- BioCro-3.2.0/BioCro/src/module_library/c3_leaf_photosynthesis.cpp | 146 +- BioCro-3.2.0/BioCro/src/module_library/c3_leaf_photosynthesis.h | 132 +- BioCro-3.2.0/BioCro/src/module_library/c3_parameters.h |only BioCro-3.2.0/BioCro/src/module_library/c3_temperature_response.cpp |only BioCro-3.2.0/BioCro/src/module_library/c3_temperature_response.h |only BioCro-3.2.0/BioCro/src/module_library/c3photo.cpp | 74 - BioCro-3.2.0/BioCro/src/module_library/c3photo.h | 5 BioCro-3.2.0/BioCro/src/module_library/c4_assimilation.h | 2 BioCro-3.2.0/BioCro/src/module_library/c4_canopy.h | 317 +++--- BioCro-3.2.0/BioCro/src/module_library/c4_leaf_photosynthesis.cpp | 95 - BioCro-3.2.0/BioCro/src/module_library/c4_leaf_photosynthesis.h | 90 - BioCro-3.2.0/BioCro/src/module_library/c4photo.cpp | 12 BioCro-3.2.0/BioCro/src/module_library/canopy_gbw_thornley.h |only BioCro-3.2.0/BioCro/src/module_library/canopy_photosynthesis_outputs.h | 2 BioCro-3.2.0/BioCro/src/module_library/carbon_assimilation_to_biomass.h |only BioCro-3.2.0/BioCro/src/module_library/development_index_from_thermal_time.h |only BioCro-3.2.0/BioCro/src/module_library/fake_solar.h | 6 BioCro-3.2.0/BioCro/src/module_library/format_time.h |only BioCro-3.2.0/BioCro/src/module_library/grimm_soybean_flowering_calculator.h | 14 BioCro-3.2.0/BioCro/src/module_library/height_from_lai.h |only BioCro-3.2.0/BioCro/src/module_library/leaf_energy_balance.cpp |only BioCro-3.2.0/BioCro/src/module_library/leaf_energy_balance.h |only BioCro-3.2.0/BioCro/src/module_library/leaf_evapotranspiration.h |only BioCro-3.2.0/BioCro/src/module_library/leaf_gbw_nikolov.h | 47 BioCro-3.2.0/BioCro/src/module_library/maintenance_respiration.h |only BioCro-3.2.0/BioCro/src/module_library/module_library.cpp | 274 ++--- BioCro-3.2.0/BioCro/src/module_library/multilayer_canopy_integrator.h | 45 BioCro-3.2.0/BioCro/src/module_library/multilayer_canopy_properties.cpp | 66 - BioCro-3.2.0/BioCro/src/module_library/multilayer_canopy_properties.h | 28 BioCro-3.2.0/BioCro/src/module_library/no_leaf_resp_neg_assim_partitioning_growth_calculator.h | 18 BioCro-3.2.0/BioCro/src/module_library/oscillator_clock_calculator.h | 120 +- BioCro-3.2.0/BioCro/src/module_library/parameter_calculator.h | 78 - BioCro-3.2.0/BioCro/src/module_library/photosynthesis_outputs.h | 2 BioCro-3.2.0/BioCro/src/module_library/rue_leaf_photosynthesis.cpp | 93 - BioCro-3.2.0/BioCro/src/module_library/rue_leaf_photosynthesis.h | 38 BioCro-3.2.0/BioCro/src/module_library/senescence_coefficient_logistic.h | 2 BioCro-3.2.0/BioCro/src/module_library/sla_linear.h |only BioCro-3.2.0/BioCro/src/module_library/sla_logistic.h |only BioCro-3.2.0/BioCro/src/module_library/solar_position_michalsky.h | 16 BioCro-3.2.0/BioCro/src/module_library/soybean_development_rate_calculator.h | 46 BioCro-3.2.0/BioCro/src/module_library/stefan_boltzmann_longwave.h |only BioCro-3.2.0/BioCro/src/module_library/sunML.cpp | 506 +++++++--- BioCro-3.2.0/BioCro/src/module_library/sunML.h | 100 + BioCro-3.2.0/BioCro/src/module_library/temperature_response_functions.h |only BioCro-3.2.0/BioCro/src/module_library/thermal_time_and_frost_senescence.h | 9 BioCro-3.2.0/BioCro/src/module_library/thermal_time_beta.h | 33 BioCro-3.2.0/BioCro/src/module_library/thermal_time_bilinear.h | 31 BioCro-3.2.0/BioCro/src/module_library/thermal_time_development_rate_calculator.h | 38 BioCro-3.2.0/BioCro/src/module_library/thermal_time_linear.h | 23 BioCro-3.2.0/BioCro/src/module_library/thermal_time_linear_extended.h | 29 BioCro-3.2.0/BioCro/src/module_library/thermal_time_trilinear.h | 35 BioCro-3.2.0/BioCro/src/module_library/water_and_air_properties.h | 126 ++ BioCro-3.2.0/BioCro/tests/README.md | 24 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_ball_berry.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_c3_assimilation.csv | 6 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_c3_canopy.csv | 6 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_c3_leaf_photosynthesis.csv | 6 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_c3_parameters.csv |only BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_c4_assimilation.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_c4_canopy.csv | 4 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_c4_leaf_photosynthesis.csv | 6 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_canopy_gbw_thornley.csv |only BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_carbon_assimilation_to_biomass.csv |only BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_development_index_from_thermal_time.csv |only BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_format_time.csv |only BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_grimm_soybean_flowering_calculator.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_height_from_lai.csv |only BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_leaf_evapotranspiration.csv |only BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_leaf_gbw_nikolov.csv | 4 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_maintenance_respiration.csv |only BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_no_leaf_resp_neg_assim_partitioning_growth_calculator.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_oscillator_clock_calculator.csv | 4 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_parameter_calculator.csv | 6 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_rue_leaf_photosynthesis.csv | 6 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_sla_linear.csv |only BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_sla_logistic.csv |only BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_soil_evaporation.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_solar_position_michalsky.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_soybean_development_rate_calculator.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_stefan_boltzmann_longwave.csv |only BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_ten_layer_c3_canopy.csv | 6 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_ten_layer_c4_canopy.csv | 6 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_ten_layer_canopy_integrator.csv | 4 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_ten_layer_canopy_properties.csv | 6 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_ten_layer_rue_canopy.csv | 6 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_thermal_time_and_frost_senescence.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_thermal_time_beta.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_thermal_time_bilinear.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_thermal_time_development_rate_calculator.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_thermal_time_linear.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_thermal_time_linear_extended.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_thermal_time_trilinear.csv | 2 BioCro-3.2.0/BioCro/tests/module_test_cases/BioCro_total_biomass.csv | 2 BioCro-3.2.0/BioCro/tests/test_data/miscanthus_x_giganteus_simulation.csv | 360 +++---- BioCro-3.2.0/BioCro/tests/test_data/soybean_simulation.csv | 276 ++--- BioCro-3.2.0/BioCro/tests/test_data/testmod.h |only BioCro-3.2.0/BioCro/tests/test_data/willow_simulation.csv | 360 +++---- BioCro-3.2.0/BioCro/tests/testthat/test.CropModels.R | 95 + BioCro-3.2.0/BioCro/tests/testthat/test.HarmonicOscillationModeling.R | 3 BioCro-3.2.0/BioCro/tests/testthat/test.Modules.R | 6 BioCro-3.2.0/BioCro/tests/testthat/test.PartialApplication.R | 4 BioCro-3.2.0/BioCro/tests/testthat/test.SystemConstruction.R | 22 BioCro-3.2.0/BioCro/tests/testthat/test.c3photo.R | 50 BioCro-3.2.0/BioCro/tests/testthat/test.canopy_modules.R |only BioCro-3.2.0/BioCro/tests/testthat/test.check_is_sequential.R |only BioCro-3.2.0/BioCro/tests/testthat/test.model_testing.R |only BioCro-3.2.0/BioCro/tests/testthat/test.module_write.R |only BioCro-3.2.0/BioCro/tests/testthat/test.time_format.R |only BioCro-3.2.0/BioCro/tests/testthat/test.weather.R |only BioCro-3.2.0/BioCro/vignettes/BioCro.Rmd | 1 BioCro-3.2.0/BioCro/vignettes/building_the_vignettes.md | 89 + 185 files changed, 3796 insertions(+), 2861 deletions(-)
Title: Compare Ordinal Endpoints Using Simulations
Description: Simultaneously evaluate multiple ordinal outcome measures. Applied data analysts in particular are faced with uncertainty in choosing appropriate statistical tests for ordinal data. The included 'shiny' application allows users to simulate outcomes given different ordinal data distributions.
Author: Pat Callahan [aut, cre, cph]
Maintainer: Pat Callahan <patricktcallahan18@gmail.com>
Diff between ordinalsimr versions 0.1.3 dated 2025-01-29 and 0.2.0 dated 2025-03-07
DESCRIPTION | 16 +- MD5 | 44 +++-- NAMESPACE | 1 NEWS.md | 11 + R/app_server.R | 34 ++++ R/app_ui.R | 15 - R/mod_kill_simulations.R |only R/mod_plot_distributions.R | 11 + R/mod_progress_modal.R |only R/mod_shinyapps_modal_notice.R |only R/mod_simulation_inputs_page.R | 4 R/mod_start_simulation.R | 2 R/mod_stats_calculations.R | 286 ++++++++++++++++++++++-------------- R/ordinal_tests.R | 4 R/run_simulations.R | 59 ++++++- R/utils.R | 36 +++- README.md | 2 inst/CITATION | 2 inst/doc/coding-simulations.html | 40 ++--- inst/doc/ordinalsimr-options.R | 40 ++--- inst/homepage.Rmd | 2 inst/homepage.html | 42 +++-- inst/scratch/trial_data.R |only man/ordinal_tests.Rd | 2 tests/testthat/test-ordinal_tests.R | 3 25 files changed, 422 insertions(+), 234 deletions(-)
Title: Easy Data Wrangling and Statistical Transformations
Description: A lightweight package to assist in key steps involved in any data
analysis workflow: (1) wrangling the raw data to get it in the needed form,
(2) applying preprocessing steps and statistical transformations, and
(3) compute statistical summaries of data properties and distributions.
It is also the data wrangling backend for packages in 'easystats' ecosystem.
References: Patil et al. (2022) <doi:10.21105/joss.04684>.
Author: Indrajeet Patil [aut] ,
Etienne Bacher [aut, cre] ,
Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Brenton M. Wiernik [aut] ,
Remi Theriault [ctb] ,
Thomas J. Faulkenberry [rev],
Robert Garrett [rev]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>
Diff between datawizard versions 1.0.0 dated 2025-01-10 and 1.0.1 dated 2025-03-07
DESCRIPTION | 8 MD5 | 18 NEWS.md | 1849 ++++++++++++++++++------------------- R/data_arrange.R | 236 ++-- R/data_modify.R | 812 ++++++++-------- R/select_nse.R | 1258 ++++++++++++------------- README.md | 1247 ++++++++++++------------ inst/WORDLIST | 253 ++--- tests/testthat/helper-state.R | 96 - tests/testthat/test-data_arrange.R | 270 ++--- 10 files changed, 3032 insertions(+), 3015 deletions(-)
Title: Package Admix for Admixture (aka Contamination) Models
Description: Implements techniques to estimate the unknown quantities
related to two-component admixture models, where the two components
can belong to any distribution (note that in the case of multinomial
mixtures, the two components must belong to the same family).
Estimation methods depend on the assumptions made on the unknown
component density; see Bordes and Vandekerkhove (2010)
<doi:10.3103/S1066530710010023>, Patra and Sen (2016)
<doi:10.1111/rssb.12148>, and Milhaud, Pommeret, Salhi, Vandekerkhove
(2024) <doi:10.3150/23-BEJ1593>. In practice, one can estimate both
the mixture weight and the unknown component density in a wide variety
of frameworks. On top of that, hypothesis tests can be performed in
one and two-sample contexts to test the unknown component density (see
Milhaud, Pommeret, Salhi and Vandekerkhove (2022)
<doi:10.1016/j.jspi.2021.05.010>, and Milhaud, Pommeret, Salhi,
Vandekerkhove (2024) <doi:10.3150/23-BEJ1593>). Finally, clustering of
unknown [...truncated...]
Author: Xavier Milhaud [aut, cre],
Pierre Vandekerkhove [ctb],
Denys Pommeret [ctb],
Yahia Salhi [ctb]
Maintainer: Xavier Milhaud <xavier.milhaud.research@gmail.com>
Diff between admix versions 2.3.3 dated 2024-11-08 and 2.3.4 dated 2025-03-07
admix-2.3.3/admix/inst/doc/admixture-clustering.R |only admix-2.3.3/admix/inst/doc/test-hypothesis.R |only admix-2.3.4/admix/DESCRIPTION | 6 admix-2.3.4/admix/MD5 | 58 +-- admix-2.3.4/admix/R/IBM_k_samples_test.R | 40 +- admix-2.3.4/admix/R/admix_cluster.R | 24 - admix-2.3.4/admix/R/admix_estim.R | 58 +-- admix-2.3.4/admix/R/admix_test.R | 28 - admix-2.3.4/admix/R/estim_BVdk.R | 141 ++++--- admix-2.3.4/admix/R/estim_IBM.R | 221 +++++++----- admix-2.3.4/admix/R/estim_PS.R | 17 admix-2.3.4/admix/R/gaussianity_test.R | 58 +-- admix-2.3.4/admix/R/orthobasis_test.R | 15 admix-2.3.4/admix/build/partial.rdb |binary admix-2.3.4/admix/build/vignette.rds |binary admix-2.3.4/admix/inst/doc/admixture-clustering.Rmd | 28 - admix-2.3.4/admix/inst/doc/admixture-clustering.html | 107 ++--- admix-2.3.4/admix/inst/doc/admixture-weight-estimation.R | 10 admix-2.3.4/admix/inst/doc/admixture-weight-estimation.Rmd | 10 admix-2.3.4/admix/inst/doc/admixture-weight-estimation.html | 38 +- admix-2.3.4/admix/inst/doc/test-hypothesis.Rmd | 43 +- admix-2.3.4/admix/inst/doc/test-hypothesis.html | 18 admix-2.3.4/admix/man/IBM_k_samples_test.Rd | 8 admix-2.3.4/admix/man/admix_estim.Rd | 2 admix-2.3.4/admix/man/estim_BVdk.Rd | 18 admix-2.3.4/admix/man/estim_IBM.Rd | 8 admix-2.3.4/admix/man/orthobasis_test.Rd | 8 admix-2.3.4/admix/vignettes/admixture-clustering.Rmd | 28 - admix-2.3.4/admix/vignettes/admixture-clustering.Rmd.orig |only admix-2.3.4/admix/vignettes/admixture-weight-estimation.Rmd | 10 admix-2.3.4/admix/vignettes/test-hypothesis.Rmd | 43 +- admix-2.3.4/admix/vignettes/test-hypothesis.Rmd.orig |only 32 files changed, 601 insertions(+), 444 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-21 0.6.8
2018-07-02 0.5.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-22 0.6.2
2024-11-28 0.6.1
2024-11-10 0.6.0
2024-06-29 0.5.2
2024-05-18 0.5.1
2024-05-06 0.5.0
2024-04-02 0.4.0
2024-02-08 0.3.0
2023-12-07 0.2.5